HHsearch alignment for GI: 254780945 and conserved domain: TIGR01970
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB; InterPro: IPR010225 This entry represents HrpB, one of two related predicted DEAH-box ATP-dependent helicases of unknown function found in many proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti, designated HelO, has been studied but is not essential for growth and mutants have no obvious phenotype . HrpB is typically about 800 residues in length, while its paralog HrpA (IPR010222 from INTERPRO), also uncharacterised, is about 1300 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing ..
Probab=98.08 E-value=0.00031 Score=52.80 Aligned_cols=322 Identities=21% Similarity=0.347 Sum_probs=219.5
Q ss_pred HHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHH-HHHCCEEEEEHHHHHHHHHHHHHHHHCCCC-----CCEEEE
Q ss_conf 99999841001343078862144223699999973344-430545886127999999998621101457-----865899
Q gi|254780945|r 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-EAGGQAVIMAPIGILAQQHYEFIKKYTQNT-----QIIVEI 354 (700)
Q Consensus 281 i~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~-~~G~Q~alMaPTEILA~QH~~~~~~~~~~~-----~i~v~l 354 (700)
T Consensus 7 LP~Lr~al~~~~~v--vL~APpGAGKsT~~PLaLL~~pW~~~~kIimLEPRRlAAR~~A~rlA~~LgE~VG~tVGyRvR~ 84 (858)
T TIGR01970 7 LPALRDALAAHPQV--VLEAPPGAGKSTAVPLALLDAPWLIGGKIIMLEPRRLAARSAAQRLASQLGEEVGDTVGYRVRL 84 (858)
T ss_pred HHHHHHHHHCCCCE--EEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC
T ss_conf 69999986117650--6416722471105889976626434880787474478999999999997088988620405771
Q ss_pred EECCCCHHHHHHHHHHHCCCCCEEEEEC----HHHCCCCCCCCCCCEEEECCCCCCCHHHH--HHHHHCC-----CC--C
Q ss_conf 6246422566768776213475486411----12013345544441788521013356889--9874025-----67--7
Q gi|254780945|r 355 ITGNMPQAHRRKALERIAHGQAHIIIGT----HALFQDSIQYYKLILVIVDEQHRFGVQQR--LKLTQKA-----TA--P 421 (700)
Q Consensus 355 Ltg~~~~~er~~i~~~i~~G~~~iiIGT----HAL~q~~v~F~~LgLvViDEQHRFGV~QR--~~L~~Kg-----~~--p 421 (700)
T Consensus 85 e-nkVs~~TR-------------lEvVTEGiLTRMlQ~DP~L~GVg~liFDEFHERsL~aDLaLALaLdVQs~LRdDPPL 150 (858)
T TIGR01970 85 E-NKVSARTR-------------LEVVTEGILTRMLQDDPELEGVGLLIFDEFHERSLDADLALALALDVQSALRDDPPL 150 (858)
T ss_pred C-CCCCCCCC-------------EEEEECCHHHHHCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 1-32587754-------------578723268774016888453523231102243467889999988533431068640
Q ss_pred CCEEECHHHHHHHHHHHHHHCCCHHHHCCCC----CCCC-CCEEEEEE-CCCHHHHHHHH----HHHHCC--CC--E-EE
Q ss_conf 6101010132278999975201011110235----5766-62079997-02002689999----763103--87--3-89
Q gi|254780945|r 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKP----AGRK-PIKTVIIP-INRIDEVIERL----KVVLSE--GK--K-AY 486 (700)
Q Consensus 422 h~L~MtATPIPRTLal~~ygdldvS~i~e~P----~gR~-~I~T~~~~-~~~~~~~~~~i----~~~l~~--g~--q-~y 486 (700)
T Consensus 151 kil~MSAT---------Ldg~rLs~LL~~Ap~v~S~GR~fPVe~rY~~P~~~~e~l~~~~~r~v~~~La~~~GSGPqd~L 221 (858)
T TIGR01970 151 KILIMSAT---------LDGERLSSLLPDAPVVESEGRSFPVEIRYLPPLREDERLEDRVSRAVEHALAEESGSGPQDVL 221 (858)
T ss_pred EEHHCCCC---------CHHHHHHHHCCCCCEEEECCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 00000026---------327999974330264200787876110227678755533478999999999616788633010
Q ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHCC--CCEEC--CCCCCCHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCE
Q ss_conf 99712012211121014666666686637--10312--014699899999999975598699998003410468887658
Q gi|254780945|r 487 WICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 (700)
Q Consensus 487 ~VcPlIeese~~~~~~~~~~~~~l~~~~~--~~v~~--lHGkm~~~ek~~~m~~F~~g~~~iLvaTtviEVGvdvpna~~ 562 (700)
T Consensus 222 vFLP--------G~aEI~Rv~~~L~e~L~~rs~v~lcPLYG~L~~~aQ~~AI~P~a~GrRKVVLATNiAEtSLTIeGvRv 293 (858)
T TIGR01970 222 VFLP--------GQAEIRRVQEQLAERLDARSEVLLCPLYGELELAAQDRAIKPAAAGRRKVVLATNIAETSLTIEGVRV 293 (858)
T ss_pred EECC--------CHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHCCCCCCCCCEEEEEHHHHHHHEEECCEEE
T ss_conf 0168--------77789999999999751787100057678889789998708774667343420001222100176358
Q ss_pred EEEECHHH---C----CHHHH----------HHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 99858525---4----74688----------7730116678983599997088899879999999984142589999998
Q gi|254780945|r 563 IIIENAEH---F----GLAQL----------HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625 (700)
Q Consensus 563 mvI~~aer---f----GLsqL----------HQLRGRVGRg~~~s~c~l~~~~~~~~~~~~Rl~~l~~~~dGf~iAe~Dl 625 (700)
T Consensus 294 ViDsGl~R~arFDP~sG~TRL~~~RisqASA~QRAGRAGR-lepGvc~RLw~~----~q~~~l~~~~~----pEIlqaDL 364 (858)
T TIGR01970 294 VIDSGLARVARFDPKSGITRLETQRISQASATQRAGRAGR-LEPGVCYRLWSE----EQHKRLAAQSE----PEILQADL 364 (858)
T ss_pred EEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CCCCHHEECCCH----HHHHHHHCCCC----CCCCHHHH
T ss_conf 8715655676347888740244578897337651263322-111411122786----89886320478----76327668
Q ss_pred HHCCCCCCCCCHHCCCC---CCCCCC
Q ss_conf 52063000260006987---440003
Q gi|254780945|r 626 KQRKEGEILGIKQSGMP---KFLIAQ 648 (700)
Q Consensus 626 ~lRG~G~~~G~~QsG~~---~~~~~d 648 (700)
T Consensus 365 ~----~LAleLA~WG~~dPsdL~wLd 386 (858)
T TIGR01970 365 A----GLALELARWGAKDPSDLRWLD 386 (858)
T ss_pred H----HHHHHHHHCCCCCHHHHHHCC
T ss_conf 8----999999742478868874237