HHsearch alignment for GI: 254780945 and conserved domain: TIGR02236
>TIGR02236 recomb_radA DNA repair and recombination protein RadA; InterPro: IPR011938 This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO), and archaeal RadB (IPR011939 from INTERPRO). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=91.62 E-value=0.11 Score=32.74 Aligned_cols=101 Identities=17% Similarity=0.114 Sum_probs=52.6
Q ss_pred CHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHCCCC------CEEEEEEEEEEEEEECCC
Q ss_conf 72136785889999988740124688554898787089740134444647888998------789999999897542158
Q gi|254780945|r 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE------RIVTITGYISQHSSFQLQ 85 (700)
Q Consensus 12 pI~~LkGVGpk~a~~L~kl~~l~~~GI~ti~DLL~~~PrrYeDr~~~~~I~~l~~g------~~vti~g~V~~~~~~~~~ 85 (700)
T Consensus 1 ~ledLPGVGp~TA~KL~Ea------Gy~t~~~iA~A~~~EL~~~~gI---~E~~A~kiI~AAR~a~~~~~F~~a~~vl~r 71 (333)
T TIGR02236 1 DLEDLPGVGPATAEKLREA------GYDTLEAIAVASPKELSEIAGI---GEGTAAKIIQAARKAADLGGFETADDVLER 71 (333)
T ss_pred CCCCCCCCCHHHHHHHHHH------HHHHHHHHHCCCHHHHHHHCCC---CHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 9665789757688998861------0788999844585795320378---777899999999998467672148999998
Q ss_pred CCCEEEEEEE----C-------CCCEEEEEE--ECCCHHHHHHHCCCCC
Q ss_conf 9833899998----1-------893699999--5188789987328988
Q gi|254780945|r 86 KRRPYKILLN----D-------GTGEITLLF--FYRKTEMLKNVFFEGR 121 (700)
Q Consensus 86 ~r~~~~v~v~----D-------~tg~i~lvf--Fn~~~~yl~k~lk~G~ 121 (700)
T Consensus 72 R~~v~kitTgs~~LDeLLGGGiETqaiTE~~GEFGSGKTQ~~HqLAVnV 120 (333)
T TIGR02236 72 RKSVGKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNV 120 (333)
T ss_pred HHCCCEEECCCHHHHHHCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHH
T ss_conf 7207504448636765607960000588877100786578766765532