HHsearch alignment for GI: 254780945 and conserved domain: TIGR02538

>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=90.30  E-value=0.28  Score=29.67  Aligned_cols=133  Identities=19%  Similarity=0.310  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHH-HCCC-CCCCCHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf             5430013457874-0468-433897786205699988999862045896565667999999987666666677776555-
Q gi|254780945|r  169 DLFKKIIVEALSR-LPVL-PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-  245 (700)
Q Consensus       169 k~irk~I~~aL~~-~~~i-~E~LP~~ll~k~~L~s~~eAL~~IH~P~~~~dle~~~~ArkRLafeELl~~QL~l~~~r~-  245 (700)
T Consensus       193 KFvN~iL~DAir~GASDIHFEPYE~~yRvRyR~DG~---L~Eva~PP~~--l~~ri~a--RiKvM----S~LDIaEkR~P  261 (577)
T TIGR02538       193 KFVNKILLDAIRKGASDIHFEPYEKKYRVRYRIDGV---LHEVAQPPLK--LANRIAA--RIKVM----SRLDIAEKRIP  261 (577)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCE---EHHHHCCCHH--HHHHHHH--HHHHH----HCCCCCCCCCC
T ss_conf             338787999984688612113676872067511673---1643258588--9999998--99997----32671224568


Q ss_pred             -------HHHHCCCCCCCCC----------------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf             -------5432035767877----------------57899998630246798899999999984100134307886214
Q gi|254780945|r  246 -------QFKKEIGIPINVE----------------GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV  302 (700)
Q Consensus       246 -------~~~~~~~~~~~~~----------------~~~~~~f~~~LPF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDV  302 (700)
T Consensus       262 QDGRiKl~~sk~k~iDFRVStLPTLfGEKvVLRiLDsS~a~Ldi~~LGFeP--~Qk~~fL---~Ai~kPqGMv-LVTGPT  335 (577)
T TIGR02538       262 QDGRIKLKLSKSKAIDFRVSTLPTLFGEKVVLRILDSSAAKLDIDKLGFEP--DQKALFL---EAIHKPQGMV-LVTGPT  335 (577)
T ss_pred             CCCCEEEEECCCEEEEEEECCCCCCCCCEEEEEEECHHHCCCCCHHHCCCH--HHHHHHH---HHHHCCCCCE-EEECCC
T ss_conf             787367753784455125378742024446677655221226742206888--8999999---9970799728-862665


Q ss_pred             CCCHHHHHHHHHHHHHH
Q ss_conf             42236999999733444
Q gi|254780945|r  303 GSGKTLVALIAMAAAVE  319 (700)
Q Consensus       303 GSGKTiVA~~A~l~~~~  319 (700)
T Consensus       336 GSGKTV-SLYTaLniLN  351 (577)
T TIGR02538       336 GSGKTV-SLYTALNILN  351 (577)
T ss_pred             CCCHHH-HHHHHHCCCC
T ss_conf             984168-7876311257