HHsearch alignment for GI: 254780945 and conserved domain: TIGR02928
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=92.90 E-value=0.2 Score=30.68 Aligned_cols=143 Identities=18% Similarity=0.238 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHH-C-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC-----EE--EEEHHHHHHHHHHHHHHHHC
Q ss_conf 88999999999841-0-0134307886214422369999997334443054-----58--86127999999998621101
Q gi|254780945|r 275 KSQESAIKDILQDM-S-QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-----AV--IMAPIGILAQQHYEFIKKYT 345 (700)
Q Consensus 275 ~~Q~~ai~eI~~Dl-~-~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q-----~a--lMaPTEILA~QH~~~~~~~~ 345 (700)
T Consensus 23 deqI~~l~~~L~~~l~PG~~P~Ni~iYGkTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~~NC-~~~~T-~y~~~~~L~ 100 (383)
T TIGR02928 23 DEQIEELAKALRPILRPGSRPSNIFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVYINC-QILDT-SYQVLVELA 100 (383)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC-CCCCC-HHHHHHHHH
T ss_conf 7899999999887506748987258878889878899999999999986226997158999778-54684-699999999
Q ss_pred CCC---CCEEEEEECCCCHHHH-HHHHHHHCCCCCEEEEECHHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCC
Q ss_conf 457---8658996246422566-768776213475486411120133455444417885210133568899874025677
Q gi|254780945|r 346 QNT---QIIVEIITGNMPQAHR-RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 (700)
Q Consensus 346 ~~~---~i~v~lLtg~~~~~er-~~i~~~i~~G~~~iiIGTHAL~q~~v~F~~LgLvViDEQHRFGV~QR~~L~~Kg~~p 421 (700)
T Consensus 101 ~~ln~~~~~~~vP~tG~s~~~~~~~l~~~l~~-----------------~~~~~~~ivLDEi--------D~Lv-~~~~d 154 (383)
T TIGR02928 101 NQLNRRGSGEEVPTTGLSTSEVFRELYKELNR-----------------ERGDSLIIVLDEI--------DKLV-RKDDD 154 (383)
T ss_pred HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-----------------HCCCEEEEEECCC--------CHHH-CCCCC
T ss_conf 98515778888988778789999999999832-----------------0188799986231--------0221-58888
Q ss_pred C----CEEECHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 6----10101013227899997520101111
Q gi|254780945|r 422 H----VLLMTATPIPRTLVLTSLGDIDISKI 448 (700)
Q Consensus 422 h----~L~MtATPIPRTLal~~ygdldvS~i 448 (700)
T Consensus 155 ~PAyS~~LY~---L~Ra~~~~~~~~~~vgvI 182 (383)
T TIGR02928 155 DPAYSKLLYQ---LSRARENGDLENAKVGVI 182 (383)
T ss_pred CHHHHHHHHH---HHHHHHCCCCCCCCEEEE
T ss_conf 8078788534---331000357788534899