HHsearch alignment for GI: 254780945 and conserved domain: TIGR03117
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.28 E-value=0.0046 Score=43.58 Aligned_cols=165 Identities=18% Similarity=0.205 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHC-CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCC-HHHHHHHHHHHHCCCEEEEE
Q ss_conf 268999976310-3873899971201221112101466666668663710312014699-89999999997559869999
Q gi|254780945|r 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMS-DIDKESVMDSFKNGTCKLLI 546 (700)
Q Consensus 469 ~~~~~~i~~~l~-~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~~v~~lHGkm~-~~ek~~~m~~F~~g~~~iLv 546 (700)
T Consensus 456 ~~l~~~l~~li~~~~Gr~LvLFTS--------~r~~~~~ae~l~~~l~~~~l~Qge~~~~~~l~~~~~~~f~~~~~svLf 527 (636)
T TIGR03117 456 ENVSLSTAAILRKAQGGTLVLTTA--------FSHISAIGQLVELGIPAEIVIQSEKNRLASAEQQFLALYANGIQPVLI 527 (636)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECC--------HHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 999999999998707988997040--------999999999997227886587457640356899999987278996898
Q ss_pred ECHHHHCCCCCCCCCE---------EEEECHHHCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCHH
Q ss_conf 8003410468887658---------9985852547468877301166789835999970888998799999999841425
Q gi|254780945|r 547 ATTVIEVGIDVVDASI---------IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617 (700)
Q Consensus 547 aTtviEVGvdvpna~~---------mvI~~aerfGLsqLHQLRGRVGRg~~~s~c~l~~~~~~~~~~~~Rl~~l~~~~dG 617 (700)
T Consensus 528 GT~SfWEGVDvpG~~~~~~~Gd~Ls~VII~rLPF~~p-------------------------~~p~~~~r~~--~~~g~~ 580 (636)
T TIGR03117 528 AAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGLN-------------------------RSLSMLKRIR--KTSVRP 580 (636)
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC-------------------------CCHHHHHHHH--HCCCCH
T ss_conf 6776406625788666788777420665756998999-------------------------8789999997--149987
Q ss_pred HH-HHHHHHHHC-CCCCCCCCH-HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89-999998520-630002600-0698744000388759999999999999998
Q gi|254780945|r 618 FL-IAEEDLKQR-KEGEILGIK-QSGMPKFLIAQPELHDSLLEIARKDAKHILT 668 (700)
Q Consensus 618 f~-iAe~Dl~lR-G~G~~~G~~-QsG~~~~~~~d~~~d~~ll~~a~~~a~~~~~ 668 (700)
T Consensus 581 ~~~vp~A~i~lkQG~GRLIRs~d~~D~G~vaiLD~RI~~~~~~~~~~~~~~~~~ 634 (636)
T TIGR03117 581 WEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGRIHWPYMESWQESVKTILD 634 (636)
T ss_pred HHHHHHHHHHHHHHCCCEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 777999999997745730314778896589996475532443146677998604