HHsearch alignment for GI: 254780945 and conserved domain: TIGR03158
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.78 E-value=8.2e-17 Score=151.44 Aligned_cols=283 Identities=20% Similarity=0.302 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHCCCCC----CEE
Q ss_conf 9999999998410013430788621442236999999733444305458861279999999986211014578----658
Q gi|254780945|r 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ----IIV 352 (700)
Q Consensus 277 Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~QH~~~~~~~~~~~~----i~v 352 (700)
T Consensus 2 q~~~~~~~~~~---~~~-~ivitAPTgsGKT~Aa~lp~l---~~~~~~lyi~P~kAL~~Dq~~~l~~~~~~~~~~~~~~~ 74 (357)
T TIGR03158 2 QVATFEALQSK---DAD-IIFNTAPTGAGKTLAWLTPLL---HGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNL 74 (357)
T ss_pred HHHHHHHHHCC---CCC-EEEEECCCCCCHHHHHHHHHH---HCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 68999999768---998-699989998569999999997---38987999777899999999999999987442346440
Q ss_pred EEEECCCCH-----------HHHHHH-----HHHHCCCCCEEEEEC----HHHCCC---------CCCCCCCCEEEECCC
Q ss_conf 996246422-----------566768-----776213475486411----120133---------455444417885210
Q gi|254780945|r 353 EIITGNMPQ-----------AHRRKA-----LERIAHGQAHIIIGT----HALFQD---------SIQYYKLILVIVDEQ 403 (700)
Q Consensus 353 ~lLtg~~~~-----------~er~~i-----~~~i~~G~~~iiIGT----HAL~q~---------~v~F~~LgLvViDEQ 403 (700)
T Consensus 75 ~~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~r~~~~~~~p~ILlTtPd~l~~~l~~~~~~~~~~~~~~~~~l~~VViDEi 154 (357)
T TIGR03158 75 LHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEF 154 (357)
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEEE
T ss_conf 21146432334446555534344541025665430258990999288999999762013651039999851674775620
Q ss_pred CCCCHHHHHH----------HHHCCCCCCCEEECHHHHHHHHH-HHHHHC--CCHHHHC---------------CCCCCC
Q ss_conf 1335688998----------74025677610101013227899-997520--1011110---------------235576
Q gi|254780945|r 404 HRFGVQQRLK----------LTQKATAPHVLLMTATPIPRTLV-LTSLGD--IDISKIT---------------EKPAGR 455 (700)
Q Consensus 404 HRFGV~QR~~----------L~~Kg~~ph~L~MtATPIPRTLa-l~~ygd--ldvS~i~---------------e~P~gR 455 (700)
T Consensus 155 H~y~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (357)
T TIGR03158 155 HLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSF 234 (357)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 00067620899999999999863368980899827998035789863234576434565444456787433345543455
Q ss_pred C----CCEEEEEECC-----CHHHHHHHHHHHHC--CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHC-CCCEECCCC
Q ss_conf 6----6207999702-----00268999976310--3873899971201221112101466666668663-710312014
Q gi|254780945|r 456 K----PIKTVIIPIN-----RIDEVIERLKVVLS--EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHG 523 (700)
Q Consensus 456 ~----~I~T~~~~~~-----~~~~~~~~i~~~l~--~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~-~~~v~~lHG 523 (700)
T Consensus 235 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~~s~--------~~~~~l~~~l~~~~~~~~~~~~~~ 306 (357)
T TIGR03158 235 RPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSL--------DEVNRLSDLLQQQGLGDDIGRITG 306 (357)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCH--------HHHHHHHHHHHHCCCCCHHHHHCC
T ss_conf 444675011234663044679999999999999985267179995589--------999999999986336411455425
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCEEEEECHHHCCHHHHHHHHHCCC
Q ss_conf 6998999999999755986999980034104688876589985852547468877301166
Q gi|254780945|r 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584 (700)
Q Consensus 524 km~~~ek~~~m~~F~~g~~~iLvaTtviEVGvdvpna~~mvI~~aerfGLsqLHQLRGRVG 584 (700)
T Consensus 307 ~~~~~~re------k~~~~~~vVaTsaLElGIDi-~~d~~i~~~---~~v~sl~QR~GRaG 357 (357)
T TIGR03158 307 FAPKKDRE------RAMQFDILLGTSTVDVGVDF-KRDWLIFSA---RDAAAFWQRLGRLG 357 (357)
T ss_pred CCHHHHHH------CCCCCCEEEECCCCEEEEEC-CCCEEEECC---CCHHHHHHCCCCCC
T ss_conf 56188985------04899999987701035611-789899589---87888997266799