HHsearch alignment for GI: 254780945 and conserved domain: cd00046

>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.65  E-value=3.1e-15  Score=139.11  Aligned_cols=131  Identities=33%  Similarity=0.493  Sum_probs=107.7

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHH--HHCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHC
Q ss_conf             0788621442236999999733444--30545886127999999998621101457865899624642256676877621
Q gi|254780945|r  295 LRILQGDVGSGKTLVALIAMAAAVE--AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA  372 (700)
Q Consensus       295 ~RLLQGDVGSGKTiVA~~A~l~~~~--~G~Q~alMaPTEILA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~  372 (700)
T Consensus         2 ~~lv~~ptGsGKT~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~   76 (144)
T cd00046           2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQE----KLL   76 (144)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCHHHHH----HHH
T ss_conf             9999889971799999999999997568976999746799999999999997488-71799996136367789----874


Q ss_pred             CCCCEEEEECHHHC-----CCCCCCCCCCEEEECCCCC-----CCHHHHHHHHHCCCCCCCEEECHHH
Q ss_conf             34754864111201-----3345544441788521013-----3568899874025677610101013
Q gi|254780945|r  373 HGQAHIIIGTHALF-----QDSIQYYKLILVIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTATP  430 (700)
Q Consensus       373 ~G~~~iiIGTHAL~-----q~~v~F~~LgLvViDEQHR-----FGV~QR~~L~~Kg~~ph~L~MtATP  430 (700)
T Consensus        77 ~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lSATp  144 (144)
T cd00046          77 SGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP  144 (144)
T ss_pred             CCCCCEEECCHHHHHHHHHCCCCCCCCCCEEEEECHHHHHCCCCHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf             58984998288999999973876555100999988887643796999999999679999489982899