HHsearch alignment for GI: 254780945 and conserved domain: cd00268
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.46 E-value=7.7e-12 Score=112.42 Aligned_cols=167 Identities=28% Similarity=0.356 Sum_probs=123.6
Q ss_pred CCCCHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHH-----HHHCCEEEEEH
Q ss_conf 87757899998630246-7988999999999841001343078862144223699999973344-----43054588612
Q gi|254780945|r 256 NVEGKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----EAGGQAVIMAP 329 (700)
Q Consensus 256 ~~~~~~~~~f~~~LPF~-LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~-----~~G~Q~alMaP 329 (700)
T Consensus 5 ~L~~~ll~~l-~~~g~~~pt~IQ~~~ip~il~g------~dvi~~a~TGSGKTlay~lpil~~l~~~~~~~~~~alil~P 77 (203)
T cd00268 5 GLSPELLRGI-YALGFEKPTPIQARAIPPLLSG------RDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAP 77 (203)
T ss_pred CCCHHHHHHH-HHCCCCCCCHHHHHHHHHHHCC------CCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf 6599999999-9879999999999999999779------98899757997222888869999986166768966999968
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEC-----HHHCCCCCCCCCCCEEEECCCC
Q ss_conf 79999999986211014578658996246422566768776213475486411-----1201334554444178852101
Q gi|254780945|r 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH 404 (700)
Q Consensus 330 TEILA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGT-----HAL~q~~v~F~~LgLvViDEQH 404 (700)
T Consensus 78 TrELa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~---~l~~-~~~IlI~TPgrl~~~l~~~~~~l~~l~~lVlDEAD 153 (203)
T cd00268 78 TRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIR---KLKR-GPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEAD 153 (203)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHH---HHHC-CCEEEEECCHHHHHHHHCCCCCCCCCCEEEEECHH
T ss_conf 7999999999999850579838999838988799999---9853-87599968189999998488651322489998588
Q ss_pred CC-----CHHHHHHHHHCCCCCCCEEECHHHHHH
Q ss_conf 33-----568899874025677610101013227
Q gi|254780945|r 405 RF-----GVQQRLKLTQKATAPHVLLMTATPIPR 433 (700)
Q Consensus 405 RF-----GV~QR~~L~~Kg~~ph~L~MtATPIPR 433 (700)
T Consensus 154 ~ll~~gf~~~i~~I~~~l~~~~Q~~lfSAT~~~~ 187 (203)
T cd00268 154 RMLDMGFEDQIREILKLLPKDRQTLLFSATMPKE 187 (203)
T ss_pred HHHHCCCHHHHHHHHHHCCCCCEEEEEEECCCHH
T ss_conf 8874776999999998589677799998049988