HHsearch alignment for GI: 254780945 and conserved domain: cd01122

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

Probab=92.88  E-value=0.55  Score=27.30  Aligned_cols=62  Identities=13%  Similarity=0.087  Sum_probs=41.0

Q ss_pred             HHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH-HHCCEEEEEHHHHHHHHHHHHHHHHC
Q ss_conf             999998410013430788621442236999999733444-30545886127999999998621101
Q gi|254780945|r  281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-AGGQAVIMAPIGILAQQHYEFIKKYT  345 (700)
Q Consensus       281 i~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~-~G~Q~alMaPTEILA~QH~~~~~~~~  345 (700)
T Consensus        20 LD~~~~Gl~~Ge--L~viaarpg~GKT~f~~~~a~~~~~~~g~~vl~~Sl-Em~~~~~~~Rlls~~   82 (271)
T cd01122          20 LNKLTKGLRKGE--LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL-EEPVVRTARRLLGQY   82 (271)
T ss_pred             HHHHHCCCCCCC--EEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEC-CCCHHHHHHHHHHHH
T ss_conf             888737999980--899996899869999999999999976990899970-499999999999998