HHsearch alignment for GI: 254780945 and conserved domain: cd01124
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.59 E-value=0.052 Score=35.37 Aligned_cols=48 Identities=23% Similarity=0.289 Sum_probs=35.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHH
Q ss_conf 7886214422369999997334443054588612799999999862110
Q gi|254780945|r 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344 (700)
Q Consensus 296 RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~QH~~~~~~~ 344 (700)
T Consensus 2 tLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis~-eE~~~~l~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEE-CCCHHHHHHHHHHC
T ss_conf 1587689999999999999999876997899995-07999999999983