HHsearch alignment for GI: 254780945 and conserved domain: cd01124

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.59  E-value=0.052  Score=35.37  Aligned_cols=48  Identities=23%  Similarity=0.289  Sum_probs=35.8

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHH
Q ss_conf             7886214422369999997334443054588612799999999862110
Q gi|254780945|r  296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY  344 (700)
Q Consensus       296 RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~QH~~~~~~~  344 (700)
T Consensus         2 tLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis~-eE~~~~l~~~~~~~   49 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL-EESPEELIENAESL   49 (187)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEE-CCCHHHHHHHHHHC
T ss_conf             1587689999999999999999876997899995-07999999999983