HHsearch alignment for GI: 254780945 and conserved domain: cd04474
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct
Probab=96.07 E-value=0.045 Score=35.84 Aligned_cols=84 Identities=18% Similarity=0.288 Sum_probs=57.0
Q ss_pred CHHHCCCC-CEEEEEEEEEEEEEEC-CCC----CCEEEEEEECC-CCEEEEEEECCCHHHHHHHCCCCCEEEEEE-EEEE
Q ss_conf 47888998-7899999998975421-589----83389999818-936999995188789987328988899998-9973
Q gi|254780945|r 60 KISEISEE-RIVTITGYISQHSSFQ-LQK----RRPYKILLNDG-TGEITLLFFYRKTEMLKNVFFEGRKITVTG-KIKK 131 (700)
Q Consensus 60 ~I~~l~~g-~~vti~g~V~~~~~~~-~~~----r~~~~v~v~D~-tg~i~lvfFn~~~~yl~k~lk~G~~v~vsG-Kv~~ 131 (700)
T Consensus 1 pI~~L~p~~~~w~Ik~RV~~Ks~ir~~~n~~g~gk~f~~~L~De~g~eI~at~f~~~~dkf~~~l~~G~vY~is~g~Vk~ 80 (104)
T cd04474 1 PISSLNPYQNKWTIKARVTNKSDIRTWSNARGEGKLFSFDLLDEDGGEIRATFFNDAVDKFYDLLEVGKVYYISKGSVKV 80 (104)
T ss_pred CCCCCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEEEEEEECCCCEEEEEEEHHHHHHHHHHCCCCCEEEEECCEEEE
T ss_conf 93014688674599999971577503506899735999999989989899999069999877334328799995659984
Q ss_pred CCCEE-EEECCEEE
Q ss_conf 18779-99778689
Q gi|254780945|r 132 LKNRI-IMVHPHYI 144 (700)
Q Consensus 132 ~~~~~-qi~hPe~~ 144 (700)
T Consensus 81 ank~y~~~~~~-ye 93 (104)
T cd04474 81 ANKKFNTLKND-YE 93 (104)
T ss_pred CCCCCCCCCCC-EE
T ss_conf 34876689987-89