HHsearch alignment for GI: 254780945 and conserved domain: cd04483
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=95.82 E-value=0.11 Score=32.79 Aligned_cols=67 Identities=18% Similarity=0.254 Sum_probs=51.2
Q ss_pred EEEEEEEEEEECCCCCCEEEEEEECCCCEEEEEEECCCH-H-------------------HHHHHCCCCCEEEEEEEEEE
Q ss_conf 999998975421589833899998189369999951887-8-------------------99873289888999989973
Q gi|254780945|r 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKT-E-------------------MLKNVFFEGRKITVTGKIKK 131 (700)
Q Consensus 72 i~g~V~~~~~~~~~~r~~~~v~v~D~tg~i~lvfFn~~~-~-------------------yl~k~lk~G~~v~vsGKv~~ 131 (700)
T Consensus 2 IlG~VVs~~er----e~f~~y~vDDgTGcI~Cv~W~~~~~~~~~s~~~~~~~~~~~~~a~~~~~~l~iG~llRVRG~I~~ 77 (92)
T cd04483 2 ILGTVVSRRER----ETFYSFGVDDGTGVVNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKVLEIGDLLRVRGSIRT 77 (92)
T ss_pred EEEEEEEEEEE----CCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEE
T ss_conf 37999999760----57169986089866998996045767766667844544445788876115775238999426888
Q ss_pred CCCEEEEECCE
Q ss_conf 18779997786
Q gi|254780945|r 132 LKNRIIMVHPH 142 (700)
Q Consensus 132 ~~~~~qi~hPe 142 (700)
T Consensus 78 yRg~rei~as~ 88 (92)
T cd04483 78 YRGEREINASV 88 (92)
T ss_pred EECEEEEEEEE
T ss_conf 70448996899