HHsearch alignment for GI: 254780945 and conserved domain: cd04484
>cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC). Replication in B. subtilis and Staphylococcus aureus requires two different polymerases, polC and DnaE. The holoenzyme is thought to include the two different polymerases. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=96.22 E-value=0.083 Score=33.76 Aligned_cols=66 Identities=24% Similarity=0.248 Sum_probs=49.7
Q ss_pred EEEEEEEEEEEEEECCCC-CCEEEEEEECCCCEEEEEEECCCHH-HHHHHCCCCCEEEEEEEEEECCC
Q ss_conf 899999998975421589-8338999981893699999518878-99873289888999989973187
Q gi|254780945|r 69 IVTITGYISQHSSFQLQK-RRPYKILLNDGTGEITLLFFYRKTE-MLKNVFFEGRKITVTGKIKKLKN 134 (700)
Q Consensus 69 ~vti~g~V~~~~~~~~~~-r~~~~v~v~D~tg~i~lvfFn~~~~-yl~k~lk~G~~v~vsGKv~~~~~ 134 (700)
T Consensus 1 nV~i~G~IF~~E~relk~gk~i~~~~iTD~t~Si~~K~F~~~~~~~~~~~~~~G~~v~v~G~v~~D~f 68 (82)
T cd04484 1 NVVVEGEVFDLEIRELKSGRKILTFKVTDYTSSITVKKFLRKDEKDKEELKSKGDWVRVRGKVQYDTF 68 (82)
T ss_pred CEEEEEEEEEEEEEECCCCCEEEEEEEEECCCCEEEEEEECCCHHHHHHHHCCCCEEEEEEEEEECCC
T ss_conf 98999999978989724898999999980889799999835854445665258979999999963178