HHsearch alignment for GI: 254780945 and conserved domain: pfam00270
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=99.76 E-value=1.8e-17 Score=156.53 Aligned_cols=151 Identities=31% Similarity=0.412 Sum_probs=121.1
Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH---HHCCEEEEEHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9889999999998410013430788621442236999999733444---3054588612799999999862110145786
Q gi|254780945|r 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350 (700)
Q Consensus 274 T~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~---~G~Q~alMaPTEILA~QH~~~~~~~~~~~~i 350 (700)
T Consensus 1 ~~~Q~~~i~~~~~------g~~~iv~~pTGsGKT~~~~~~~l~~~~~~~~~~~~v~l~Pt~aL~~q~~~~~~~~~~~~~~ 74 (167)
T pfam00270 1 TPIQAEAIPAILE------GKDVLVQAPTGSGKTLAFLLPALQALLKNPDGPQALVLAPTRELAEQIYEELKKLGKYLGL 74 (167)
T ss_pred CHHHHHHHHHHHC------CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9459999999976------9978998899975899999999999874778987999906088888999886432102676
Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCCCEEEEECHH-----HCCCCCCCCCCCEEEECCCCCCCH-----HHHHHHHHCCCC
Q ss_conf 5899624642256676877621347548641112-----013345544441788521013356-----889987402567
Q gi|254780945|r 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRFGV-----QQRLKLTQKATA 420 (700)
Q Consensus 351 ~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTHA-----L~q~~v~F~~LgLvViDEQHRFGV-----~QR~~L~~Kg~~ 420 (700)
T Consensus 75 ~~~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lIvDE~H~~~~~~~g~~~~~il~~l~~~ 150 (167)
T pfam00270 75 KVALLYGGDSPKEQLRKLK----KGPDILVGTPGRLLDLLERGGLLLKNLKLLVLDEAHRLLDQGFGDDLEEILRRLPPK 150 (167)
T ss_pred CEEEECCCCCHHHHHHHHC----CCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECHHHHHCCCHHHHHHHHHHHCCCC
T ss_conf 4046417861788987640----577079947899999998033121100389988088673358299999999857999
Q ss_pred CCCEEECHHHHHHHH
Q ss_conf 761010101322789
Q gi|254780945|r 421 PHVLLMTATPIPRTL 435 (700)
Q Consensus 421 ph~L~MtATPIPRTL 435 (700)
T Consensus 151 ~q~v~~SAT~-~~~~ 164 (167)
T pfam00270 151 RQILLLSATL-PRNV 164 (167)
T ss_pred CCEEEEECCC-CHHH
T ss_conf 9789997269-9778