HHsearch alignment for GI: 254780945 and conserved domain: pfam00270

>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=93.14  E-value=0.45  Score=27.98  Aligned_cols=80  Identities=16%  Similarity=0.250  Sum_probs=56.6

Q ss_pred             CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCC---CCEECCCCCCCHHHHHHHHHHHHCCCEEEEEECHHH-----H
Q ss_conf             38738999712012211121014666666686637---103120146998999999999755986999980034-----1
Q gi|254780945|r  481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI-----E  552 (700)
Q Consensus       481 ~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~---~~v~~lHGkm~~~ek~~~m~~F~~g~~~iLvaTtvi-----E  552 (700)
T Consensus        44 ~~~~~v~l~Pt~a--------L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~l~~~l~  111 (167)
T pfam00270        44 DGPQALVLAPTRE--------LAEQIYEELKKLGKYLGLKVALLYGGDSPKEQLRKLK----KGPDILVGTPGRLLDLLE  111 (167)
T ss_pred             CCCEEEEECCHHH--------HHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHC----CCCCEEEECHHHHHHHHH
T ss_conf             8987999906088--------8889998864321026764046417861788987640----577079947899999998


Q ss_pred             -CCCCCCCCCEEEEECHHHCC
Q ss_conf             -04688876589985852547
Q gi|254780945|r  553 -VGIDVVDASIIIIENAEHFG  572 (700)
Q Consensus       553 -VGvdvpna~~mvI~~aerfG  572 (700)
T Consensus       112 ~~~~~~~~~~~lIvDE~H~~~  132 (167)
T pfam00270       112 RGGLLLKNLKLLVLDEAHRLL  132 (167)
T ss_pred             HCCCCCCCEEEEEEECHHHHH
T ss_conf             033121100389988088673