HHsearch alignment for GI: 254780945 and conserved domain: pfam00270
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=93.14 E-value=0.45 Score=27.98 Aligned_cols=80 Identities=16% Similarity=0.250 Sum_probs=56.6
Q ss_pred CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCC---CCEECCCCCCCHHHHHHHHHHHHCCCEEEEEECHHH-----H
Q ss_conf 38738999712012211121014666666686637---103120146998999999999755986999980034-----1
Q gi|254780945|r 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI-----E 552 (700)
Q Consensus 481 ~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~---~~v~~lHGkm~~~ek~~~m~~F~~g~~~iLvaTtvi-----E 552 (700)
T Consensus 44 ~~~~~v~l~Pt~a--------L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~l~~~l~ 111 (167)
T pfam00270 44 DGPQALVLAPTRE--------LAEQIYEELKKLGKYLGLKVALLYGGDSPKEQLRKLK----KGPDILVGTPGRLLDLLE 111 (167)
T ss_pred CCCEEEEECCHHH--------HHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHC----CCCCEEEECHHHHHHHHH
T ss_conf 8987999906088--------8889998864321026764046417861788987640----577079947899999998
Q ss_pred -CCCCCCCCCEEEEECHHHCC
Q ss_conf -04688876589985852547
Q gi|254780945|r 553 -VGIDVVDASIIIIENAEHFG 572 (700)
Q Consensus 553 -VGvdvpna~~mvI~~aerfG 572 (700)
T Consensus 112 ~~~~~~~~~~~lIvDE~H~~~ 132 (167)
T pfam00270 112 RGGLLLKNLKLLVLDEAHRLL 132 (167)
T ss_pred HCCCCCCCEEEEEEECHHHHH
T ss_conf 033121100389988088673