HHsearch alignment for GI: 254780945 and conserved domain: pfam03354
>pfam03354 Terminase_1 Phage Terminase. The majority of the members of this family are bacteriophage proteins, several of which are thought to be terminase large subunit proteins. There are also a number of bacterial proteins of unknown function.
Probab=92.91 E-value=0.27 Score=29.75 Aligned_cols=140 Identities=13% Similarity=0.144 Sum_probs=70.5
Q ss_pred EEEECCCCCHHHH-HHHHHHHHH---HHHCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 8862144223699-999973344---430545886127999999998621101457865899624642256676877621
Q gi|254780945|r 297 ILQGDVGSGKTLV-ALIAMAAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372 (700)
Q Consensus 297 LLQGDVGSGKTiV-A~~A~l~~~---~~G~Q~alMaPTEILA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~ 372 (700)
T Consensus 26 ~i~v~RkNGKS~l~a~i~ly~~~~~ge~~~ei~~~A~~~~QA~~~f~~~~~mi~~~p~l~~~~~~~~~~~~~~~i~~~~t 105 (473)
T pfam03354 26 YVSVGRKNGKSYLMAIRVLYELLLGGKSNQEILVAATTFKQAEKLFKYVKNQVKLSPFLSIANENKLLKSQKDGIEMKIN 105 (473)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEEEECCC
T ss_conf 99982686026999999999997099838749999798999999999999999739877755301101310015898078
Q ss_pred CCCCEEEEECHHHCCCCCCCCCCCEEEECCCCCCCHHHH-HHHHH-CCC--CCCC-EEECHHHHHHHHHHHHH
Q ss_conf 347548641112013345544441788521013356889-98740-256--7761-01010132278999975
Q gi|254780945|r 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR-LKLTQ-KAT--APHV-LLMTATPIPRTLVLTSL 440 (700)
Q Consensus 373 ~G~~~iiIGTHAL~q~~v~F~~LgLvViDEQHRFGV~QR-~~L~~-Kg~--~ph~-L~MtATPIPRTLal~~y 440 (700)
T Consensus 106 ~s~~~~ls~~----~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~sg~~~r~~~l~~~ITTag~~~~~~~~~~~ 174 (473)
T pfam03354 106 NNVFKALSNN----GDQYDGGNPSLAIFDEMHEFKDRELVSTIVTGMRKQDNPQTIQITTAGPNRGGPYDEER 174 (473)
T ss_pred CCEEEEEECC----CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHH
T ss_conf 9689998578----98766998728998722304882789999876316888719997677889887189999