HHsearch alignment for GI: 254780945 and conserved domain: pfam10391
>pfam10391 DNA_pol_lambd_f Fingers domain of DNA polymerase lambda. DNA polymerases catalyse the addition of dNMPs onto the 3-prime ends of DNA chains. There is a general polymerase fold consisting of three subdomains that have been likened to the fingers, palm, and thumb of a right hand. DNA_pol_lambd_f is the central three-helical region of DNA polymerase lambda referred to as the F and G helices of the fingers domain. Contacts with DNA involve this conserved helix-hairpin-helix motif in the fingers region which interacts with the primer strand. This motif is common to several DNA binding proteins and confers a sequence-independent interaction with the DNA backbone.
Probab=90.36 E-value=0.25 Score=29.94 Aligned_cols=28 Identities=21% Similarity=0.165 Sum_probs=23.9
Q ss_pred HHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 2136785889999988740124688554898787
Q gi|254780945|r 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLF 46 (700)
Q Consensus 13 I~~LkGVGpk~a~~L~kl~~l~~~GI~ti~DLL~ 46 (700)
T Consensus 4 f~~I~GvGp~~A~~~~~~------G~~ti~dL~~ 31 (52)
T pfam10391 4 FTNIWGVGPKTARKWYRQ------GIRTLEDLRE 31 (52)
T ss_pred HHHCCCCCHHHHHHHHHH------CCCCHHHHHH
T ss_conf 663544069999999994------7888999974