HHsearch alignment for GI: 254780945 and conserved domain: pfam11731

>pfam11731 Cdd1 Pathogenicity locus. Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria. Many members of the family are annotated as being putative mitomycin resistance proteins but this could not be confirmed.
Probab=91.81  E-value=0.12  Score=32.38  Aligned_cols=39  Identities=18%  Similarity=0.178  Sum_probs=32.9

Q ss_pred             CCHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCC
Q ss_conf             772136785889999988740124688554898787089740134
Q gi|254780945|r   11 APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDR   55 (700)
Q Consensus        11 ~pI~~LkGVGpk~a~~L~kl~~l~~~GI~ti~DLL~~~PrrYeDr   55 (700)
T Consensus        12 ~~L~~lPnIG~a~a~DL~~L------Gi~~~~~L~g~dp~elY~~   50 (92)
T pfam11731        12 KELTDLPNIGKATAKDLRLL------GINSPAQLAGRDPLELYER   50 (92)
T ss_pred             HHHHCCCCCCHHHHHHHHHH------CCCCHHHHHCCCHHHHHHH
T ss_conf             98741897469999999991------8998999917999999999