HHsearch alignment for GI: 254780945 and conserved domain: pfam11731
>pfam11731 Cdd1 Pathogenicity locus. Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria. Many members of the family are annotated as being putative mitomycin resistance proteins but this could not be confirmed.
Probab=91.81 E-value=0.12 Score=32.38 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=32.9
Q ss_pred CCHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCC
Q ss_conf 772136785889999988740124688554898787089740134
Q gi|254780945|r 11 APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDR 55 (700)
Q Consensus 11 ~pI~~LkGVGpk~a~~L~kl~~l~~~GI~ti~DLL~~~PrrYeDr 55 (700)
T Consensus 12 ~~L~~lPnIG~a~a~DL~~L------Gi~~~~~L~g~dp~elY~~ 50 (92)
T pfam11731 12 KELTDLPNIGKATAKDLRLL------GINSPAQLAGRDPLELYER 50 (92)
T ss_pred HHHHCCCCCCHHHHHHHHHH------CCCCHHHHHCCCHHHHHHH
T ss_conf 98741897469999999991------8998999917999999999