HHsearch alignment for GI: 254780945 and conserved domain: smart00382

>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.16  E-value=0.03  Score=37.24  Aligned_cols=117  Identities=20%  Similarity=0.153  Sum_probs=62.4

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf             07886214422369999997334443054588612799999999862110145786589962464225667687762134
Q gi|254780945|r  295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG  374 (700)
Q Consensus       295 ~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G  374 (700)
T Consensus         4 ~ill~G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~   77 (148)
T smart00382        4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVG------GKKASGSGELRLRLALALARKL   77 (148)
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHC------CCCCCCCHHHHHHHHHHHHHHC
T ss_conf             8999999970299999999987266899689987599898889876530001------1221051999999999999844


Q ss_pred             CCEEEEECHHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHHH-----------CCCCCCCEEECHH----HHHHHHH
Q ss_conf             754864111201334554444178852101335688998740-----------2567761010101----3227899
Q gi|254780945|r  375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ-----------KATAPHVLLMTAT----PIPRTLV  436 (700)
Q Consensus       375 ~~~iiIGTHAL~q~~v~F~~LgLvViDEQHRFGV~QR~~L~~-----------Kg~~ph~L~MtAT----PIPRTLa  436 (700)
T Consensus        78 -------------------~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~n~~~~~~~~~~~  135 (148)
T smart00382       78 -------------------KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLR  135 (148)
T ss_pred             -------------------CCCEEEEECCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHC
T ss_conf             -------------------9989998275021476207999999999985176578998999956995224987707