HHsearch alignment for GI: 254780945 and conserved domain: smart00382
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.16 E-value=0.03 Score=37.24 Aligned_cols=117 Identities=20% Similarity=0.153 Sum_probs=62.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 07886214422369999997334443054588612799999999862110145786589962464225667687762134
Q gi|254780945|r 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 (700)
Q Consensus 295 ~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G 374 (700)
T Consensus 4 ~ill~G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVG------GKKASGSGELRLRLALALARKL 77 (148)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHC------CCCCCCCHHHHHHHHHHHHHHC
T ss_conf 8999999970299999999987266899689987599898889876530001------1221051999999999999844
Q ss_pred CCEEEEECHHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHHH-----------CCCCCCCEEECHH----HHHHHHH
Q ss_conf 754864111201334554444178852101335688998740-----------2567761010101----3227899
Q gi|254780945|r 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ-----------KATAPHVLLMTAT----PIPRTLV 436 (700)
Q Consensus 375 ~~~iiIGTHAL~q~~v~F~~LgLvViDEQHRFGV~QR~~L~~-----------Kg~~ph~L~MtAT----PIPRTLa 436 (700)
T Consensus 78 -------------------~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~n~~~~~~~~~~~ 135 (148)
T smart00382 78 -------------------KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLR 135 (148)
T ss_pred -------------------CCCEEEEECCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHC
T ss_conf -------------------9989998275021476207999999999985176578998999956995224987707