BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus str. psy62] (700 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus str. psy62] gi|254040622|gb|ACT57418.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus str. psy62] Length = 700 Score = 1429 bits (3699), Expect = 0.0, Method: Compositional matrix adjust. Identities = 700/700 (100%), Positives = 700/700 (100%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK Sbjct: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG Sbjct: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS Sbjct: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL Sbjct: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG Sbjct: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP Sbjct: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA Sbjct: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS Sbjct: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG Sbjct: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL Sbjct: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR Sbjct: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG Sbjct: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 >gi|315122358|ref|YP_004062847.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495760|gb|ADR52359.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 700 Score = 1183 bits (3061), Expect = 0.0, Method: Compositional matrix adjust. Identities = 567/700 (81%), Positives = 642/700 (91%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRPS LNPLFAPLS+ RGVG+K L SKII+ GNANE+RFIDLLFY+PSSFIDR Y PK Sbjct: 1 MRPSLLNPLFAPLSSLRGVGEKNVLLFSKIIDFGNANESRFIDLLFYYPSSFIDRRYHPK 60 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 ISEISEER+VTITG+I+ S + K+ PY+ILLNDGTGEI+LLFF++KTE LKN+FF+G Sbjct: 61 ISEISEERVVTITGHIASLPSVRSPKKIPYQILLNDGTGEISLLFFHKKTEWLKNIFFKG 120 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 RKITVTG+IKK KNR+ M+HPHY F++SQDV PLIE +YSLPTGLS D FKKI+ EALS Sbjct: 121 RKITVTGQIKKFKNRLTMIHPHYFFYDSQDVILPLIEPIYSLPTGLSADFFKKIVDEALS 180 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 RLP LPEW+E DLLQ+KSFPS+ EAF IIHNPR KDFEWTSPARERLAYDE LAGQIAL Sbjct: 181 RLPTLPEWLENDLLQEKSFPSMKEAFKIIHNPRDVKDFEWTSPARERLAYDEFLAGQIAL 240 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 LL+RK+FK+E+GIPI VEGKIAQKI++++PFSPTKSQ AI+DILQDMSQKNRMLRILQG Sbjct: 241 LLVRKKFKEELGIPIQVEGKIAQKIVQSLPFSPTKSQNLAIRDILQDMSQKNRMLRILQG 300 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKTLVALIAMA AVEAGGQAVIMAPIGILAQQHYEFIKKYTQ++QI +EIITGNMP Sbjct: 301 DVGSGKTLVALIAMATAVEAGGQAVIMAPIGILAQQHYEFIKKYTQDSQIGIEIITGNMP 360 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 ++ R+ AL+RIA+GQA IIIGTHALFQDSIQY+KLIL++VDEQHRFGVQQRLKLTQK + Sbjct: 361 KSQRKIALKRIANGQAQIIIGTHALFQDSIQYHKLILIVVDEQHRFGVQQRLKLTQKGNS 420 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 PHVLLMTATPIPRTL+LT+ GDI++SKITEKPAGRKPIKTVIIPI+RI+EV+ERLKVV+S Sbjct: 421 PHVLLMTATPIPRTLILTAFGDINVSKITEKPAGRKPIKTVIIPISRINEVVERLKVVVS 480 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540 E KKAYWICPQIEEK+ES+F SV+ERF SL E F S IAIIHGRMSD DKES+M+SFKNG Sbjct: 481 ENKKAYWICPQIEEKEESHFCSVIERFKSLQEQFGSDIAIIHGRMSDTDKESIMNSFKNG 540 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 T KLLIATTVIEVG+DV+DASIIIIE+AEHFGLAQLHQLRGRVGRGEE+SSCILLYHPPL Sbjct: 541 TYKLLIATTVIEVGVDVIDASIIIIEHAEHFGLAQLHQLRGRVGRGEEVSSCILLYHPPL 600 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S+ SYTRLS+L+NTEDGFLIAEEDLKQR EGEILGIKQSGMPKFLIAQPELH +LLEIAR Sbjct: 601 SRVSYTRLSILRNTEDGFLIAEEDLKQRGEGEILGIKQSGMPKFLIAQPELHSTLLEIAR 660 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 KDA +I+ QDP+LTSVRG+S+RILLYLY+YNEAFQFI+AG Sbjct: 661 KDAINIIKQDPNLTSVRGRSLRILLYLYRYNEAFQFIKAG 700 >gi|222085971|ref|YP_002544503.1| ATP-dependent DNA helicase RecG [Agrobacterium radiobacter K84] gi|221723419|gb|ACM26575.1| ATP-dependent DNA helicase RecG [Agrobacterium radiobacter K84] Length = 701 Score = 789 bits (2037), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/701 (53%), Positives = 508/701 (72%), Gaps = 1/701 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP+ L+PLFA +S+ GVG K + L K+++ ++ R +DLLF+ P S IDR +P Sbjct: 1 MRPAILDPLFASISSLPGVGPKVAELLVKLLDRETIDDCRVVDLLFHAPHSIIDRREQPG 60 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I+ + IVTITG + +H + PY++ L+D TGE+ L+FF K + L+ Sbjct: 61 IARAPQGAIVTITGRVDRHQPPPNPRSNVPYRVFLHDETGELGLVFFRGKAQWLEKQLPI 120 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 +TV+GK+ R MVHP YI S+ N PL+E VY L GL++ +K + AL Sbjct: 121 DETVTVSGKVDWFNGRPSMVHPDYIMRESEAQNLPLVEPVYPLTAGLALKFLRKTVEAAL 180 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 +RLP LPEW ++ L QK+ FPSI+++F+++H P A D + +PAR RLAYDE LAGQ++ Sbjct: 181 ARLPQLPEWDDEALAQKQGFPSISDSFHMLHAPLDAADIDPQAPARRRLAYDEFLAGQLS 240 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L+R++ +K G P++ G I++KIL ++PFS T SQ +AI DIL+DM+ +RMLR+LQ Sbjct: 241 LALVRQRLRKVAGQPVHPTGDISRKILESLPFSLTNSQTAAIADILKDMAGTDRMLRLLQ 300 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG+GKTLVAL+A+AA +E+GGQAV+MAP ILA+QHY I K+ + + VE++TG Sbjct: 301 GDVGAGKTLVALMAIAAVIESGGQAVLMAPTEILARQHYATIAKFAASANLSVEVLTGRT 360 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R LERIA G+A I+IGTHALFQDS+ Y L+L +VDEQHRFGV QRL+LT K Sbjct: 361 KGRERDAILERIASGEAQIVIGTHALFQDSVSYANLMLAVVDEQHRFGVHQRLRLTAKGI 420 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+T+ +P R +++ RLK L Sbjct: 421 SPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTITVPTERTGDIVSRLKSAL 480 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 SEGKKAYWICP +EE +ES+ SV ER +L + I +IHGRMS +K++VM +FKN Sbjct: 481 SEGKKAYWICPLVEESEESDLMSVEERHATLVKALGPGIGLIHGRMSGPEKDAVMMAFKN 540 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY P Sbjct: 541 GEIRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP 600 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 L + + RLS++++TEDGF IAEEDLK R EGE+LG +QSG P F IA E H LLEIA Sbjct: 601 LGETGHARLSIMRDTEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA 660 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 RKDA +++ +DPDLT RG ++R LLYL++ +EA +F+RAG Sbjct: 661 RKDAAYLIDRDPDLTGERGMAVRTLLYLFRRDEAIRFLRAG 701 >gi|325293166|ref|YP_004279030.1| ATP-dependent DNA helicase [Agrobacterium sp. H13-3] gi|325061019|gb|ADY64710.1| ATP-dependent DNA helicase [Agrobacterium sp. H13-3] Length = 704 Score = 787 bits (2033), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/701 (54%), Positives = 506/701 (72%), Gaps = 1/701 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP+ L+PLFA +ST GVG K + L+K+++ NA++TR IDLLF+ PS+ IDR RP Sbjct: 4 MRPAILDPLFASVSTLAGVGPKLADLLAKLLSRENADDTRVIDLLFHAPSNVIDRRNRPG 63 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I+ + IVTI G + +H R PY++ L+D TGE+ L FF K + L Sbjct: 64 IALAAPGAIVTIQGRVDRHQPAPPGNRSAPYRVFLHDETGELALTFFRAKGDWLSKALPV 123 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 ++ V+GK+ R MVHP ++ S+ N PL+EAVY + GLS + ++ I L Sbjct: 124 DEEVLVSGKVDWFNGRASMVHPDFMVKLSEAENLPLVEAVYPMTAGLSPKVLRRAIEGGL 183 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 S+LPV PEWI++ L ++ F +A +F +H+PR + D + +PAR RLAYDE LAGQ++ Sbjct: 184 SKLPVFPEWIDETLKTRQGFGDVASSFRELHDPRDSADIDPQAPARRRLAYDEFLAGQLS 243 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L+R++ +K G PI +G IA KIL +PFS T SQ +++KDIL DM+ ++RMLR+LQ Sbjct: 244 LALVRQRLRKVAGQPIRAKGDIAAKILSQLPFSLTPSQNASVKDILTDMASEDRMLRLLQ 303 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG+GKTLVAL+AMA AVEAGGQAV+MAP ILA+QH+ I K I VE++TG Sbjct: 304 GDVGAGKTLVALMAMATAVEAGGQAVLMAPTEILARQHFATISKLANAAGITVEVLTGRT 363 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 RR+ ER+A G+A I+IGTHALFQDS+ Y L+L +VDEQHRFGV QRL+LT K Sbjct: 364 KGKERREIEERVASGEAQIVIGTHALFQDSVSYKNLVLAVVDEQHRFGVHQRLRLTAKGI 423 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+TV IP RI +++ERL+ L Sbjct: 424 TPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPTERIGDIVERLRAAL 483 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 EGKKAYWICP +EE +ES+ S ER L + ++I +IHGRMS +K++ M +FKN Sbjct: 484 KEGKKAYWICPLVEETEESDLMSAEERHAVLSQMLGANIGLIHGRMSGPEKDAAMLAFKN 543 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY P Sbjct: 544 GGTRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP 603 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 LS+N RLS+L+++EDGFLIAEEDLK R EGE+LG +QSG P F IA E H LLEIA Sbjct: 604 LSENGRARLSILRDSEDGFLIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA 663 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 RKDA +++ +DP+LT RG+S+R LLYL++ +EA +F+ AG Sbjct: 664 RKDAAYVIERDPELTGPRGESLRTLLYLHRRDEAIRFLHAG 704 >gi|159184915|ref|NP_354765.2| ATP-dependent DNA helicase [Agrobacterium tumefaciens str. C58] gi|159140194|gb|AAK87550.2| ATP-dependent DNA helicase [Agrobacterium tumefaciens str. C58] Length = 701 Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/701 (53%), Positives = 506/701 (72%), Gaps = 1/701 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP+ L+PLFA +ST GVG K + L+K+++ +A++TR IDLLF+ PS+ IDR RP Sbjct: 1 MRPAILDPLFASVSTLAGVGPKLADLLAKLLSRESADDTRVIDLLFHAPSNVIDRRNRPG 60 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I+ + IVTI G + +H R PY++ L+D TGE+ L FF K + L Sbjct: 61 IALAAPGAIVTIQGRVDRHQPPPAGNRSAPYRVFLHDETGELALTFFRAKGDWLSKALPV 120 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 ++ V+GK+ R MVHP ++ S+ N PL+EAVY + GLS + ++ I L Sbjct: 121 DEEVLVSGKVDWFNGRASMVHPDFMVKLSEAENLPLVEAVYPMTAGLSPKVLRRAIEGGL 180 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 S+LPV PEWI++ L ++ F +A +F +H+PR + D + +PAR RLAYDE LAGQ++ Sbjct: 181 SKLPVFPEWIDETLKTRQGFGDVASSFRELHDPRDSADIDPQAPARRRLAYDEFLAGQLS 240 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L+R++ +K G PI G IA KIL +PFS T SQ +A+KDIL DM+ ++RMLR+LQ Sbjct: 241 LALVRQRLRKVAGQPIRARGDIAAKILSQLPFSLTASQSAAVKDILTDMAGEDRMLRLLQ 300 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG+GKTLVAL+AMA AVEAGGQAV+MAP ILA+QH+ I K + + VE++TG Sbjct: 301 GDVGAGKTLVALMAMATAVEAGGQAVLMAPTEILARQHFATISKLAKAVGLTVEVLTGRT 360 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 RR+ ER+A G+A I+IGTHALFQDS+ Y L+L +VDEQHRFGV QRL+LT K Sbjct: 361 KGKERREIEERVASGEAQIVIGTHALFQDSVSYKNLVLAVVDEQHRFGVHQRLRLTAKGI 420 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+TV IP RI +++ERL+ L Sbjct: 421 TPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPTERIGDIVERLRAAL 480 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 +GKKAYWICP +EE +ES+ S ER L + ++I +IHGRM+ +K++ M +FK+ Sbjct: 481 KDGKKAYWICPLVEETEESDLMSAEERHAVLSQMLGANIGLIHGRMNGPEKDAAMLAFKS 540 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY P Sbjct: 541 GETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP 600 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 LS+N RLS+L+++EDGFLIAEEDLK R EGE+LG +QSG P F IA E H LLEIA Sbjct: 601 LSENGRARLSILRDSEDGFLIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA 660 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 RKDA +++ +DP+LT RG+S+R LLYL++ +EA +F+ AG Sbjct: 661 RKDAAYVIERDPELTGPRGESLRTLLYLHRRDEAIRFLHAG 701 >gi|327188304|gb|EGE55523.1| ATP-dependent DNA helicase protein [Rhizobium etli CNPAF512] Length = 701 Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/701 (53%), Positives = 496/701 (70%), Gaps = 1/701 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP+ L+PLF+P+S GVG K + L K++ + R IDLLF+ P S IDR +P Sbjct: 1 MRPAILDPLFSPISGLPGVGPKIAELLVKLLGREAPEDCRVIDLLFHAPFSLIDRRNQPG 60 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I+ + IVTIT + +H K PY++ L+D TGE+TL+FF + L+ Sbjct: 61 IARAPQGAIVTITARVDRHQVPPRGKSNVPYRVFLHDDTGELTLVFFRGQAAWLEKQLPI 120 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 ++TV+GK+ R MVHP YI + N PL+E +Y L GLS +KII AL Sbjct: 121 DAEVTVSGKVDWFNGRASMVHPDYIVRADEAENLPLVEPIYPLTAGLSPKTLRKIIDAAL 180 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 R P LPEWI+ L QK+ PSI ++F+++H PR D + +PAR RLAYDE LAGQ++ Sbjct: 181 PRFPELPEWIDPALAQKQGLPSIRDSFHMLHEPRDPSDIDPQAPARRRLAYDEFLAGQLS 240 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L+R++ +K G P+ G ++ KIL+ +PFSPT SQ AI DIL+DM+ RMLR+LQ Sbjct: 241 LSLVRQRLRKVAGQPVLATGAVSGKILKTLPFSPTSSQNEAIADILKDMAGTERMLRLLQ 300 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKTLVALI+MAA +E+GGQAV+MAP ILA+QH+ I K+ + + +E++TG Sbjct: 301 GDVGSGKTLVALISMAAVIESGGQAVLMAPTEILARQHHATISKFAASAGLGIEVLTGRT 360 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R + LERIA G A I+IGTHALFQDS+ Y KL+L +VDEQHRFGV QRL+LT K Sbjct: 361 KGREREEILERIASGAAQIVIGTHALFQDSVTYDKLMLAVVDEQHRFGVHQRLRLTAKGI 420 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+T+ +P+ R E++ RL+ L Sbjct: 421 SPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTITVPMERTGEIVGRLQSAL 480 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 +EGKKAYWICP +EE +E + S ER +L I +IHGRMS +K++ M +FKN Sbjct: 481 AEGKKAYWICPLVEESEELDLMSAEERHATLVAALGPDIGLIHGRMSGPEKDAAMMAFKN 540 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY P Sbjct: 541 GETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP 600 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 L + + RLS+++ TEDGF IAEEDLK R EGE+LG +QSG P F IA E H LLEIA Sbjct: 601 LGETGHARLSIMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA 660 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 R DA +++ +DP+LTS RGQ+IR LLYL++ +EA +F+RAG Sbjct: 661 RNDAAYLIERDPELTSERGQAIRTLLYLFRRDEAIRFLRAG 701 >gi|190891737|ref|YP_001978279.1| ATP-dependent DNA helicase [Rhizobium etli CIAT 652] gi|190697016|gb|ACE91101.1| ATP-dependent DNA helicase protein [Rhizobium etli CIAT 652] Length = 701 Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/701 (53%), Positives = 497/701 (70%), Gaps = 1/701 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP+ L+PLF+P+S GVG K + L K++ + R IDLLF+ P + IDR +P Sbjct: 1 MRPAILDPLFSPISGLPGVGPKIAELLVKLLGRETPEDCRVIDLLFHAPFALIDRRNQPG 60 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I+ + IVTIT + +H K PY++ L+D TGE+TL+FF + L+ Sbjct: 61 IARAPQGAIVTITARVDRHQVPPRGKSNVPYRVFLHDETGELTLVFFRGQAAWLEKQLPI 120 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 ++TV+GK+ R MVHP YI + N PL+E +Y L GLS +KII AL Sbjct: 121 DAEVTVSGKVDWFNGRASMVHPDYIVRAEEAENLPLVEPIYPLTAGLSPKTLRKIIDAAL 180 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 R P LPEWI+ L QK+ PSI ++F+++H PR D + +PAR RLAYDE LAGQ++ Sbjct: 181 PRFPELPEWIDPALAQKQGLPSIRDSFHMLHEPRDPSDIDPQAPARRRLAYDEFLAGQLS 240 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L+R++ +K G P+ G ++ KIL+ +PFSPT SQ AI DIL+DM+ RMLR+LQ Sbjct: 241 LSLVRQRLRKVAGQPVLATGAVSGKILKTLPFSPTSSQNEAIADILKDMAGTERMLRLLQ 300 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKTLVAL++MAA +E+GGQAV+MAP ILA+QH+ I K+ + + +E++TG Sbjct: 301 GDVGSGKTLVALMSMAAVIESGGQAVLMAPTEILARQHHATISKFAASAGLGIEVLTGRT 360 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R + LERIA G A I+IGTHALFQDS+ Y KL+L +VDEQHRFGV QRL+LT K Sbjct: 361 KGREREEILERIASGAAQIVIGTHALFQDSVTYDKLMLAVVDEQHRFGVHQRLRLTAKGI 420 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+T+ +P+ R E++ RL+ L Sbjct: 421 SPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTITVPMERTGEIVGRLQSAL 480 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 +EGKKAYWICP +E+ +E + S ER +L I +IHGRMS +K++ M +FKN Sbjct: 481 AEGKKAYWICPLVEDSEELDLMSAEERHATLSTALGPDIGLIHGRMSGPEKDAAMMAFKN 540 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY P Sbjct: 541 GETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP 600 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 L + + RLS+++ TEDGF IAEEDLK R EGE+LG +QSG P F IA E H LLEIA Sbjct: 601 LGETGHARLSIMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA 660 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 RKDA +++ +DP+LTS RGQ+IR LLYL++ +EA +F+RAG Sbjct: 661 RKDAAYLIERDPELTSERGQAIRTLLYLFRRDEAIRFLRAG 701 >gi|222148733|ref|YP_002549690.1| ATP-dependent DNA helicase RecG [Agrobacterium vitis S4] gi|221735719|gb|ACM36682.1| ATP-dependent DNA helicase RecG [Agrobacterium vitis S4] Length = 790 Score = 775 bits (2000), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/701 (52%), Positives = 494/701 (70%), Gaps = 1/701 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRPS L+PLFA +ST GVG K + L+ ++ +A + R +DLLF P IDR +P Sbjct: 90 MRPSLLDPLFASVSTLPGVGPKLAQLLASLLGREDAEDARVVDLLFLSPHRLIDRRNQPG 149 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I+ + IVT+TG + +H+ + R PY++ L+D TGE+ L FF K L+ Sbjct: 150 IARAPQGAIVTVTGRVDRHTPAPKENRNAPYRVFLHDETGELALTFFRAKGNWLEKALPV 209 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 ITV+GKI R MVHP ++ S+ PL+E VY L GLS + KK + A+ Sbjct: 210 DEIITVSGKIDWFNGRPSMVHPDFMVKASEAATMPLVEPVYPLTAGLSPKVLKKAVDHAV 269 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 RLP EWI+ L+ K+ F ++ +F +H+P KD + +PAR RLAYDE LAGQ++ Sbjct: 270 ERLPDFAEWIDPALVTKQGFDAVKPSFERLHSPLDEKDVDPQAPARRRLAYDEFLAGQVS 329 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L+R++ +K G P+ G+++ KIL +PF+PT SQ+ A+ DIL+DM +RMLR++Q Sbjct: 330 LALVRQRLRKVAGTPVRATGEMSGKILAALPFTPTNSQKDAVADILKDMESDSRMLRLVQ 389 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG+GKTLVAL+AMAA VE GGQAV+MAP ILA+QH+ + K I V+++TG Sbjct: 390 GDVGAGKTLVALLAMAAVVENGGQAVLMAPTEILARQHHATLSKMAAAAGIAVDVLTGRT 449 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R LERIA GQA I+IGTHALFQDS+ Y+ L+L +VDEQHRFGV QRL+LT K Sbjct: 450 KGREREAVLERIASGQAQIVIGTHALFQDSVNYHNLMLAVVDEQHRFGVHQRLRLTAKGV 509 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+TV +P+ RI ++++RL+ + Sbjct: 510 SPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTVPVERIGDIVDRLQAAI 569 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 + GKKAYWICP +EE +ES SV ERF L + I ++HGRM +K++ M +FK+ Sbjct: 570 ASGKKAYWICPLVEETEESELMSVEERFEVLKMCLKAPIGLVHGRMKGEEKDAAMLAFKS 629 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG E SSCILLY P Sbjct: 630 GETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGAEASSCILLYKGP 689 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 L + RLS+L+++EDGFLIAEEDLK R EGE+LG +QSG P F IA E H LLE+A Sbjct: 690 LGETGKARLSILRDSEDGFLIAEEDLKLRGEGELLGTRQSGTPGFRIASLEHHADLLEVA 749 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 RKDA ++L +DPDLTS RG+++R LLYL++ +EA +F+RAG Sbjct: 750 RKDAAYLLERDPDLTSARGEAVRTLLYLHRRDEAVRFLRAG 790 >gi|209549324|ref|YP_002281241.1| ATP-dependent DNA helicase RecG [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535080|gb|ACI55015.1| ATP-dependent DNA helicase RecG [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 701 Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/701 (52%), Positives = 498/701 (71%), Gaps = 1/701 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP+ L+PLF+P+S GVG K + L K++ + R IDL+F+ P S IDR +P Sbjct: 1 MRPAILDPLFSPISGLPGVGPKIAELLVKLLGRETPEDCRVIDLIFHAPFSLIDRRNQPG 60 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I+ + IVTIT + +H K PY++ L+D TGE+TL+FF + L+ Sbjct: 61 IARAPQGAIVTITARVDRHQVPPRGKSNVPYRVFLHDETGELTLVFFRGQAAWLEKQLPV 120 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 ++TV+GK+ R MVHP YI + N PL+E +Y L GLS +KII AL Sbjct: 121 DAEVTVSGKVDWFNGRASMVHPDYIVRADEAENLPLVEPIYPLTAGLSPKTLRKIIDAAL 180 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 R P LPEWI++ L QK+ P+I ++F+++H PR D + +PAR RLAYDE LAGQ++ Sbjct: 181 PRFPELPEWIDQALAQKQGLPTIRDSFHMLHEPRDPADIDAQAPARRRLAYDEFLAGQLS 240 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L+R++ +K G P+ G+++ KIL+++PFS T SQ AI ++L+DM+ RMLR+LQ Sbjct: 241 LSLVRQRLRKVAGQPVQATGEVSAKILKSLPFSLTSSQNEAIAEVLKDMAGTERMLRLLQ 300 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKTLVAL+AMAA +E+GGQAV+MAP ILA+QH+ I K+ + + +EI+TG Sbjct: 301 GDVGSGKTLVALMAMAAVIESGGQAVLMAPTEILARQHHATISKFAASAGLGIEILTGRT 360 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R + L+RIA G A IIIGTHALFQDS+ Y KL+L +VDEQHRFGV QRL+LT K Sbjct: 361 KGREREEILDRIASGAAQIIIGTHALFQDSVAYAKLMLAVVDEQHRFGVHQRLRLTAKGI 420 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+T+ +P+ R E++ RL+ L Sbjct: 421 SPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTITVPMERTGEIVGRLQSAL 480 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 +EGKKAYWICP +EE +E + S ER +L I +IHGRMS +K++ M +FKN Sbjct: 481 AEGKKAYWICPLVEESEELDLMSAEERHATLVAALGPDIGLIHGRMSGPEKDAAMMAFKN 540 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY P Sbjct: 541 GETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP 600 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 L + + RLS+++ TEDGF IAEEDLK R EGE+LG +QSG P F IA E H LLEIA Sbjct: 601 LGETGHARLSIMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA 660 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 RKDA +++ +DP+LTS RG +IR LLYL++ +EA +F+RAG Sbjct: 661 RKDAAYLIERDPELTSERGTAIRTLLYLFRRDEAIRFLRAG 701 >gi|86357712|ref|YP_469604.1| ATP-dependent DNA helicase protein [Rhizobium etli CFN 42] gi|86281814|gb|ABC90877.1| ATP-dependent DNA helicase protein [Rhizobium etli CFN 42] Length = 701 Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/701 (52%), Positives = 494/701 (70%), Gaps = 1/701 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP+ L+PLF+P+S GVG K + L K+ + R IDLLF+ P S IDR +P Sbjct: 1 MRPAILDPLFSPISGLPGVGPKIAELLVKLFGRETVEDCRVIDLLFHAPFSLIDRRNQPG 60 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I + IVTIT + +H K PY++ L+D TGE+TL+FF + L+ Sbjct: 61 IGLAPQGAIVTITARVDRHLVPPRGKSNVPYRVFLHDETGELTLVFFRGQAAWLEKQLPV 120 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 ++TV+GK+ R MVHP YI + + PL+E +Y L GLS +KII AL Sbjct: 121 DAEVTVSGKVDWFNGRASMVHPDYIVKAEEVESLPLVEPIYPLTAGLSPKTLRKIIDAAL 180 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 R P +PEWI+ L QK+ PSI ++F+++H PR D + +PAR RLAYDE LAGQ++ Sbjct: 181 PRFPEMPEWIDLTLTQKQGLPSIRDSFHMLHEPRDPSDVDPQAPARRRLAYDEFLAGQLS 240 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L+R++ K G P++ G ++ KI++ +PFS T SQ AI +IL+DM+ RMLR+LQ Sbjct: 241 LSLVRQRLHKVAGQPVHATGAVSSKIVKALPFSLTSSQNDAIAEILKDMAGAERMLRLLQ 300 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKTLVAL+AMAA +E+GGQAV+MAP ILA+QH+ I K+ + + +E++TG Sbjct: 301 GDVGSGKTLVALMAMAAVIESGGQAVLMAPTEILARQHHATISKFAASAGLGIEVLTGRT 360 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R + LERIA G A IIIGTHALFQDS+ Y KL+L +VDEQHRFGV QRL+LT K Sbjct: 361 KGREREEILERIASGAAQIIIGTHALFQDSVTYDKLMLAVVDEQHRFGVHQRLRLTAKGI 420 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +PH+L+MTATPIPRTLVL + GD+D+SK+TEKP GRKPI+T+ +P+ R E++ RL+ L Sbjct: 421 SPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPVGRKPIQTITVPMERTGEIVGRLQSAL 480 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 +EGKKAYWICP +EE +E + S ER +L S I +IHGRMS +K++ M +FKN Sbjct: 481 AEGKKAYWICPLVEESEELDLMSAEERHATLVAALGSDIGLIHGRMSGPEKDAAMVAFKN 540 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY P Sbjct: 541 GETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP 600 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 L + + RLS+++ TEDGF IAEEDLK R EGE+LG +QSG P F IA E H LLEIA Sbjct: 601 LGETGHARLSIMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA 660 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 RKDA +++ +DP+LTS RGQ+IR LLYL++ +EA +F+RAG Sbjct: 661 RKDAAYLIERDPELTSERGQAIRTLLYLFRRDEAIRFLRAG 701 >gi|37728039|gb|AAO43500.1| recombination and repair protein [Rhizobium etli] Length = 701 Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/701 (52%), Positives = 493/701 (70%), Gaps = 1/701 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP+ L+PLF+P+S GVG K + L K+ + R IDLLF+ P S IDR +P Sbjct: 1 MRPAILDPLFSPISGLPGVGPKIAELLVKLFGRETVEDCRVIDLLFHAPFSLIDRRNQPG 60 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I + IVTIT + +H K PY++ L+D TGE+TL+FF + L+ Sbjct: 61 IGLAPQGAIVTITARVDRHLVPPRGKSNVPYRVFLHDETGELTLVFFRGQAAWLEKQLPV 120 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 ++TV+GK+ R MVHP YI + + PL+E +Y L GLS +KII AL Sbjct: 121 DAEVTVSGKVDWFNGRASMVHPDYIVKAEEVESLPLVEPIYPLTAGLSPKTLRKIIDAAL 180 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 R P +PEWI+ L QK+ PSI ++F+++H PR D + +PAR RLAYDE LAGQ++ Sbjct: 181 PRFPEMPEWIDLTLTQKQGLPSIRDSFHMLHEPRDPSDVDPQAPARRRLAYDEFLAGQLS 240 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L+R++ K G P++ G ++ KI++ +PFS T SQ AI +IL+DM+ RMLR+LQ Sbjct: 241 LSLVRQRLHKVAGQPVHATGAVSSKIVKALPFSLTSSQNDAIAEILKDMAGAERMLRLLQ 300 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKTLVAL+AMAA +E+GGQAV+MAP ILA+QH+ I K+ + + +E++TG Sbjct: 301 GDVGSGKTLVALMAMAAVIESGGQAVLMAPTEILARQHHATISKFAASAGLGIEVLTGRT 360 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R + LERIA G A IIIGTHALFQDS+ Y KL+L +VDEQHRFGV QRL+LT K Sbjct: 361 KGREREEILERIASGAAQIIIGTHALFQDSVTYDKLMLAVVDEQHRFGVHQRLRLTAKGI 420 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +PH+L+MTATPIPRTLVL + G +D+SK+TEKP GRKPI+T+ +P+ R E++ RL+ L Sbjct: 421 SPHMLVMTATPIPRTLVLAAFGHMDVSKLTEKPVGRKPIQTITVPMERTGEIVGRLQSAL 480 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 +EGKKAYWICP +EE +E + S ER +L S I +IHGRMS +K++ M +FKN Sbjct: 481 AEGKKAYWICPLVEESEELDLMSAEERHATLVAALGSDIGLIHGRMSGPEKDAAMVAFKN 540 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY P Sbjct: 541 GETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP 600 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 L + + RLS+++ TEDGF IAEEDLK R EGE+LG +QSG P F IA E H LLEIA Sbjct: 601 LGETGHARLSIMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA 660 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 RKDA +++ +DP+LTS RGQ+IR LLYL++ +EA +F+RAG Sbjct: 661 RKDAAYLIERDPELTSERGQAIRTLLYLFRRDEAIRFLRAG 701 >gi|116252136|ref|YP_767974.1| ATP-dependent DNA helicase RecG [Rhizobium leguminosarum bv. viciae 3841] gi|115256784|emb|CAK07874.1| putative ATP-dependent DNA helicase [Rhizobium leguminosarum bv. viciae 3841] Length = 701 Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/701 (52%), Positives = 492/701 (70%), Gaps = 1/701 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP+ L+PLF+P+S GVG K + L K++ + R IDLLF+ P S IDR +P Sbjct: 1 MRPAILDPLFSPISGLPGVGPKIADLLVKLLGRETLEDCRVIDLLFHAPFSLIDRRNQPG 60 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I+ + IVTIT + +H K PY++ L+D TGE+TL+FF + L+ Sbjct: 61 IARAPQGAIVTITARVDRHQVPPGGKSNIPYRVFLHDETGELTLVFFRGQAAWLEKQLPV 120 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 ++TV+GKI R MVHP YI + + PL+E +Y L GLS +KII L Sbjct: 121 DAEVTVSGKIDWFNGRASMVHPDYIVRADEAESLPLVEPIYPLTAGLSPKTLRKIIDAGL 180 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 R P LPEWI+ L +K+ PSI ++F+++H PR D + +PAR RLAYDE LAGQ++ Sbjct: 181 PRFPELPEWIDLALTEKQGLPSIRDSFHMLHEPRDPSDIDPRAPARRRLAYDEFLAGQLS 240 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L+R++ +K G P+ G I+ KIL+ +PFS T SQ AI ++L+DM+ RMLR+LQ Sbjct: 241 LSLVRQRLRKVAGQPVTATGAISSKILKTLPFSLTGSQNEAIAEVLKDMAGNERMLRLLQ 300 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKTLVAL+AMAA +E+GGQAV+MAP ILA+QH+ I K+ + + +E++TG Sbjct: 301 GDVGSGKTLVALMAMAAVIESGGQAVLMAPTEILARQHHATISKFAASAGLGIEVLTGRT 360 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R + LERIA G A I+IGTHALFQDS+ Y L+L +VDEQHRFGV QRL+LT K Sbjct: 361 KGREREEILERIASGAAQIVIGTHALFQDSVAYANLMLAVVDEQHRFGVHQRLRLTAKGL 420 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+T+ +P+ R E++ RL+ + Sbjct: 421 SPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTITVPMERTGEIVGRLQSAI 480 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 +EGKKAYWICP +EE +E + S ER +L I +IHGRMS +K++ M +FKN Sbjct: 481 AEGKKAYWICPLVEESEELDLMSAEERHATLVSALGPGIGLIHGRMSGPEKDAAMMAFKN 540 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY P Sbjct: 541 GETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP 600 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 L + + RLS+++ TEDGF IAEEDLK R EGE+LG +QSG P F IA E H LLEIA Sbjct: 601 LGETGHARLSIMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA 660 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 R DA +++ +DP+LT+ RG +IR LLYL++ +EA +F+RAG Sbjct: 661 RTDAAYLIERDPELTTERGTAIRTLLYLFRRDEAIRFLRAG 701 >gi|150396615|ref|YP_001327082.1| ATP-dependent DNA helicase RecG [Sinorhizobium medicae WSM419] gi|150028130|gb|ABR60247.1| ATP-dependent DNA helicase RecG [Sinorhizobium medicae WSM419] Length = 701 Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/701 (51%), Positives = 492/701 (70%), Gaps = 1/701 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP+ L+PLF+PL T G+G K ++++ + R +DLLF+ P S IDR +P Sbjct: 1 MRPALLDPLFSPLDTLPGIGPKTGELYARLLGRETIEDCRVVDLLFHAPHSLIDRRRQPG 60 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I+ IVTITG + +H + PY++ L+D TGE+ L FF K L+ Sbjct: 61 IAYAPAGSIVTITGRVDRHQPAPSGRSNVPYRVFLHDDTGELALTFFRVKGNWLEKALPV 120 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 + V+GK+ R MVHP Y+ ++ N L+E VY L GL+ +K I A+ Sbjct: 121 DETVIVSGKVDWFNGRASMVHPDYMVRAAESQNMTLVEPVYGLTAGLTSRPLRKSIEAAV 180 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 +R+P LPEW++ LL+++ F S+ E+ +H PR D + +PAR RLAYDE LAGQ++ Sbjct: 181 ARVPDLPEWLDGALLRQQGFQSVKESLQRLHEPRDDADIDAQAPARRRLAYDEFLAGQLS 240 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L+R++ +K G P++ G+++ ++ +PFS T SQ +A+ +ILQDMS +RMLR+LQ Sbjct: 241 LSLVRQRLRKVSGTPVHPTGRLSSPVIAALPFSLTSSQSTAVDEILQDMSGTDRMLRLLQ 300 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT VAL+A+ AA+EAGGQAV+MAP ILA+QH+ + K I ++++TG Sbjct: 301 GDVGSGKTAVALMAILAALEAGGQAVLMAPTEILARQHHATLSKLAAPAGITIDVLTGRT 360 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R LERIA G+ ++IGTHALFQD++ Y L+L +VDEQHRFGV QRL+LT K Sbjct: 361 KGKERDAVLERIASGETQLVIGTHALFQDAVSYRHLVLAVVDEQHRFGVHQRLRLTAKGV 420 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+TV IP R DE++ERL L Sbjct: 421 SPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPNERTDEIVERLDAAL 480 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 S+GKKAYWICP +EE +E++ S ER+ SL F + ++HGRM+ +K++VM +FK Sbjct: 481 SQGKKAYWICPLVEESEETDAMSADERYQSLARRFGKDVGLVHGRMTGPEKDAVMLAFKT 540 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY P Sbjct: 541 GDIRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKSP 600 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 LS+ RLSVL+ TEDGFLIAEEDL+ R EGE+LG +QSG P FLIA E H LLE+A Sbjct: 601 LSEAGRARLSVLRETEDGFLIAEEDLRLRGEGELLGTRQSGTPGFLIASLEAHGDLLEMA 660 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 RKDA +++ +DP+LTS RG ++R+LLYL++ +EA +F+RAG Sbjct: 661 RKDAAYVIDRDPELTSERGAALRMLLYLFRRDEAIRFLRAG 701 >gi|241204637|ref|YP_002975733.1| ATP-dependent DNA helicase RecG [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858527|gb|ACS56194.1| ATP-dependent DNA helicase RecG [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 701 Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/701 (52%), Positives = 492/701 (70%), Gaps = 1/701 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP+ L+PLF+P+S GVG K + L K++ + + R IDLLF+ P S IDR +P Sbjct: 1 MRPAILDPLFSPISGLPGVGPKIADLLVKLLGRESLEDCRVIDLLFHAPFSLIDRRNQPG 60 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I+ + IVTIT + +H K PY++ L+D TGE+TL+FF + L+ Sbjct: 61 IARAPQGAIVTITARVDRHQVPPGGKSNIPYRVFLHDETGELTLVFFRGQAAWLEKQLPV 120 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 ++TV+GKI R MVHP YI + + PL+E +Y L GLS +KII L Sbjct: 121 DAEVTVSGKIDWFNGRASMVHPDYIVRADETESLPLVEPIYPLTAGLSPKTLRKIIDAGL 180 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 R P LPEW + L Q++ PSI ++F+++H P D + +PAR RLAYDE LAGQ++ Sbjct: 181 PRFPELPEWDDLALTQREGLPSIRDSFHMLHEPHDPGDIDPQAPARRRLAYDEFLAGQLS 240 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L+R++ +K G P+ G I+ KIL+ +PFS T SQ AI ++L+DM+ RMLR+LQ Sbjct: 241 LSLVRQRLRKVAGQPVTATGAISSKILKALPFSLTSSQNEAIAEVLKDMAGNERMLRLLQ 300 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKTLVAL+AMAA +E+GGQAV+MAP ILA+QH+ I K+ + + +E++TG Sbjct: 301 GDVGSGKTLVALMAMAAVIESGGQAVLMAPTEILARQHHATISKFAASAGLGIEVLTGRT 360 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R + LERIA G A I+IGTHALFQDS+ Y L+L +VDEQHRFGV QRL+LT K Sbjct: 361 KGREREEILERIASGAAQIVIGTHALFQDSVAYANLMLAVVDEQHRFGVHQRLRLTAKGL 420 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+T+ +P+ R E++ RL+ + Sbjct: 421 SPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTITVPMERTGEIVGRLQSAI 480 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 +EGKKAYWICP +EE +E + S ER +L I +IHGRMS +K++ M +FKN Sbjct: 481 TEGKKAYWICPLVEESEELDLMSAEERHATLVSALGPGIGLIHGRMSGPEKDAAMMAFKN 540 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY P Sbjct: 541 GETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP 600 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 L + + RLS+++ TEDGF IAEEDLK R EGE+LG +QSG P F IA E H LLEIA Sbjct: 601 LGETGHARLSIMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA 660 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 RKDA +++ +DP+LT+ RG +IR LLYL++ +EA +F+RAG Sbjct: 661 RKDAAYLIERDPELTTERGAAIRTLLYLFRRDEAIRFLRAG 701 >gi|227822022|ref|YP_002825993.1| ATP-dependent DNA helicase RecG [Sinorhizobium fredii NGR234] gi|227341022|gb|ACP25240.1| ATP-dependent DNA helicase [Sinorhizobium fredii NGR234] Length = 764 Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/701 (50%), Positives = 497/701 (70%), Gaps = 1/701 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP+ L+PLFAPL + G+G + ++++ + ++ R IDL+F+ P S IDR +P Sbjct: 64 MRPALLDPLFAPLDSLPGIGPRTGELYARLLGRESIDDCRVIDLVFHAPHSLIDRRQQPG 123 Query: 61 ISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I+ + IVTITG + +H S + + PY++ L+D TGE+ L FF K L+ Sbjct: 124 IANAPQGSIVTITGRVDRHQPSPRGRPNVPYRVFLHDDTGELALTFFRVKGNWLEKALPI 183 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 + V+GK+ R MVHP Y+ ++ + PL+E VY L GL++ +K I A+ Sbjct: 184 DETVIVSGKVDWFNGRASMVHPDYMVRAAEAESLPLVEPVYGLTAGLTLRPLRKSIEAAV 243 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 +R+P LPEW+++ L +++ F S E F+ +H PR D +PAR RLAYDE LAGQ++ Sbjct: 244 ARVPDLPEWLDQTLQRQQGFASARECFHRLHEPRDETDIAPQAPARRRLAYDEFLAGQLS 303 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L+R++ +K G P++ GK++ ++ +PFS T SQ +A+ DIL DMS RMLR+LQ Sbjct: 304 LSLVRQRLRKVAGTPVHATGKLSGPVIAALPFSLTASQSAAVGDILADMSGTERMLRLLQ 363 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT +AL++M AA+E+GGQAV+MAP ILA+QH+ ++K + ++++TG Sbjct: 364 GDVGSGKTAIALMSMLAAIESGGQAVLMAPTEILARQHHATLQKMAAPAGVTIDVLTGRT 423 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R LERIA G+ ++IGTHALFQD++ Y +L+L +VDEQHRFGV QRL+LT K Sbjct: 424 KGKERDAILERIASGETQMVIGTHALFQDAVNYRQLVLAVVDEQHRFGVHQRLRLTAKGI 483 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+TV +P R DE+++RL L Sbjct: 484 SPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTVPTERTDEIVDRLDAAL 543 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 S+GKKAYWICP +EE +E++ S ER+ L + F + ++HGRM +K++VM +FKN Sbjct: 544 SQGKKAYWICPLVEESEETDTMSADERYQRLVQRFGQDVGLVHGRMPGPEKDAVMLAFKN 603 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G ++L+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY P Sbjct: 604 GEIRVLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP 663 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 LS+ RLS+L+ TEDGF+IAEEDLK R EGE+LG +QSG P F IA E H LLEIA Sbjct: 664 LSEAGRARLSILRETEDGFVIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA 723 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 RKDA +++ +DPDLT+ RGQ++R LLYL++ +EA +F+RAG Sbjct: 724 RKDAAYLIERDPDLTTERGQALRTLLYLHRRDEAIRFLRAG 764 >gi|163760202|ref|ZP_02167285.1| ATP-dependent DNA helicase [Hoeflea phototrophica DFL-43] gi|162282601|gb|EDQ32889.1| ATP-dependent DNA helicase [Hoeflea phototrophica DFL-43] Length = 705 Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/705 (52%), Positives = 483/705 (68%), Gaps = 5/705 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP L+PLF P+ + G+G K + L+++ +TR +DLL P S IDR R Sbjct: 1 MRPLELDPLFVPVESLPGIGPKSAEALARVTGRDGPEDTRALDLLLLPPHSMIDRTMRAG 60 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I+E E I T+ + +H +R PY++ ++D TGE+ L FF+ K L+ + Sbjct: 61 ITEAPEGTIATLKVRVDRHQPSPPGRRSVPYRVYVHDDTGEMALTFFHSKQAWLEKILPV 120 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G + V+GK++ R MVHP +I + PLIE VY L GLS L ++ I A+ Sbjct: 121 GETVLVSGKVEWFNGRPSMVHPDHIVAEADAHTLPLIEPVYPLTAGLSPKLLRRSIEAAI 180 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 +PVLPEW + L+ + FP +A+A +H+P A D E +PAR RLAYDELLAGQ++ Sbjct: 181 ELMPVLPEWADPHLVAQNGFPDVADAIRQLHHPESAMDLEPQTPARRRLAYDELLAGQLS 240 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L+R+ +K G P+N EG++ + +L +PFS T SQ +A+ +IL DM+ +RMLR+LQ Sbjct: 241 LALVRQTLRKLPGYPVNAEGRVRKAVLDALPFSLTGSQTTAVDEILADMAGSDRMLRLLQ 300 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT VA++AMA AVEAGGQAV+MAP ILA+QH+ I+K I V ++T Sbjct: 301 GDVGSGKTAVAMLAMADAVEAGGQAVLMAPTEILARQHFATIEKMAAAAGIEVVVLTARA 360 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R + LERIA G+A II+GTHALFQDS+ Y L L +VDEQHRFGV QRL+LT K T Sbjct: 361 KGRERTELLERIASGEAQIIVGTHALFQDSVVYNNLTLAVVDEQHRFGVHQRLRLTAKGT 420 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 APH+L+MTATPIPRTLVL + GD+D+SK+TEKP GR+PI TV IP R+ ++IERL+ L Sbjct: 421 APHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPVGRQPITTVTIPDERLGDIIERLRAAL 480 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHE----HFTSSIAIIHGRMSDIDKESVMD 535 +GKKAYWICP +E+ ES+ SV R SL E F IA++HGRMS DK+ M Sbjct: 481 RDGKKAYWICPLVEDSDESDLMSVESRHASLVEAFGREFADQIALVHGRMSSDDKDHAMS 540 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +FK+G +LL+ATTVIEVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRGE SSCILL Sbjct: 541 AFKSGQTRLLVATTVIEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGEGASSCILL 600 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 YH PL + + RLSVL+ TEDGF IAEEDLK R EGE+LG +QSGMP F +A H L Sbjct: 601 YHGPLGETAGARLSVLRETEDGFRIAEEDLKLRGEGEVLGTRQSGMPGFRLANLSAHADL 660 Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 LEIAR DA+++L DP L + RG ++R+LLYL + +EA +F+RAG Sbjct: 661 LEIARSDARNVLESDPGLATPRGAALRMLLYLMRRDEAIRFLRAG 705 >gi|15965406|ref|NP_385759.1| ATP-dependent DNA helicase protein [Sinorhizobium meliloti 1021] gi|307308797|ref|ZP_07588493.1| ATP-dependent DNA helicase RecG [Sinorhizobium meliloti BL225C] gi|307317270|ref|ZP_07596711.1| ATP-dependent DNA helicase RecG [Sinorhizobium meliloti AK83] gi|15074587|emb|CAC46232.1| Probable ATP-dependent DNA helicase [Sinorhizobium meliloti 1021] gi|306897358|gb|EFN28103.1| ATP-dependent DNA helicase RecG [Sinorhizobium meliloti AK83] gi|306900803|gb|EFN31414.1| ATP-dependent DNA helicase RecG [Sinorhizobium meliloti BL225C] Length = 701 Score = 747 bits (1929), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/701 (51%), Positives = 494/701 (70%), Gaps = 1/701 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP+ L+PLF+PL T G+G K ++++ + R +DLLF+ P S IDR +P Sbjct: 1 MRPALLDPLFSPLDTLPGIGPKTGELYARLLGRETVEDCRVVDLLFHIPHSLIDRRRQPG 60 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I+ IVTITG + +H + PY++ L+D TGE+ L FF + L+ Sbjct: 61 IAHAPNGAIVTITGRVDRHQPAPSGRSNVPYRVFLHDETGELALTFFRVRGNWLEKALPI 120 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 + V+GK+ R MVHP Y+ ++ N PL+E VY L GL+ +K I A+ Sbjct: 121 DETVIVSGKVDWFNRRASMVHPDYMVRAAESENMPLVEPVYGLTAGLTSRPLRKSIEAAV 180 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 +R+P LPEW+++ LL+++ F S E+F +H PR D + +PAR R+AYDE LAGQ++ Sbjct: 181 ARVPDLPEWLDEALLRQQGFKSAKESFQRLHEPRDETDIDAQAPARRRIAYDEFLAGQLS 240 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L+R++ +K G PI+ G+++ ++ +PFS T SQ +A+ +IL DMS +RMLR+LQ Sbjct: 241 LSLVRQRLRKVAGTPIHPTGRLSGPVIAALPFSLTNSQSAAVDEILADMSGADRMLRLLQ 300 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT VAL+AM AAVE+GGQAV+MAP ILA+QH+ + + I ++I+TG Sbjct: 301 GDVGSGKTAVALMAMLAAVESGGQAVLMAPTEILARQHHATLSRMAAPAGITIDILTGRT 360 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R LERIA G+ ++IGTHALFQD++ Y +L+L +VDEQHRFGV QRL+LT K Sbjct: 361 KGKERDAILERIASGETQLVIGTHALFQDAVIYRQLVLAVVDEQHRFGVHQRLRLTAKGI 420 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+TV IP R DE++ERL L Sbjct: 421 SPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPNERTDEIVERLDAAL 480 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 +GKKAYWICP +EE +E++ S ER+ SL F + ++HGRM+ +K++VM +FKN Sbjct: 481 RQGKKAYWICPLVEESEETDAMSADERYQSLARRFGKDVGLVHGRMAGPEKDAVMLAFKN 540 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY P Sbjct: 541 GEIRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKSP 600 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 LS+ RLSVL+ +EDGFLIAEEDLK R EGE+LG +QSG P FLIA E H LLE+A Sbjct: 601 LSEAGRARLSVLRESEDGFLIAEEDLKLRGEGELLGTRQSGTPGFLIASLEAHADLLEMA 660 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 RKDA +++ +DP+LTS RGQ++R LLYL++ +EA +F+RAG Sbjct: 661 RKDAAYVIDRDPELTSERGQALRTLLYLFRRDEAIRFLRAG 701 >gi|254720432|ref|ZP_05182243.1| ATP-dependent DNA helicase RecG [Brucella sp. 83/13] gi|265985452|ref|ZP_06098187.1| ATP-dependent DNA helicase RecG [Brucella sp. 83/13] gi|306838991|ref|ZP_07471812.1| ATP-dependent DNA helicase RecG [Brucella sp. NF 2653] gi|264664044|gb|EEZ34305.1| ATP-dependent DNA helicase RecG [Brucella sp. 83/13] gi|306405897|gb|EFM62155.1| ATP-dependent DNA helicase RecG [Brucella sp. NF 2653] Length = 706 Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/702 (49%), Positives = 470/702 (66%), Gaps = 2/702 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59 MRPS L+P FA + + G+G K ++ L K++ E + LLF P S IDR RP Sbjct: 5 MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64 Query: 60 KISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118 I+ E IVT+ + QH + + + P+++ +D TGEI L FF+ + L+ + Sbjct: 65 GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 EG + V+GK++ R MVHP YI + PL+E VY L GLS + I EA Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTHGRAIKEA 184 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L+R+PVLPEWI+ LL ++ FP+ +A N +H P D S R RLAYDE LAGQ+ Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 AL L+R + ++ G P+ G I +I+R +P+ TK+QE A+++I+ D+ RMLR+L Sbjct: 245 ALALVRAKTRRLSGRPLEGTGNIVAEIMRQLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKT+V L+AMA A E+GGQ+ +MAP +LA+QH+ I + + ++TG Sbjct: 305 QGDVGSGKTVVGLLAMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R LE + G+ I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K Sbjct: 365 EKGCERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++ Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 484 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 +SEG+K YWICP +EE + S ERF SL F I +IHGRMS +K+ M +FK Sbjct: 485 VSEGQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PL + + RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A E H LLEI Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 ARKDA++IL DPDL S RGQ++R+LLYL+ +EA + +RAG Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLFGRDEAIRLLRAG 706 >gi|306841771|ref|ZP_07474457.1| ATP-dependent DNA helicase RecG [Brucella sp. BO2] gi|306288176|gb|EFM59563.1| ATP-dependent DNA helicase RecG [Brucella sp. BO2] Length = 714 Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/702 (48%), Positives = 471/702 (67%), Gaps = 2/702 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59 MRPS L+P FA + + G+G K ++ L K++ E + LLF P S IDR RP Sbjct: 13 MRPSLLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSVIDRRNRP 72 Query: 60 KISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118 I+ E IVT+ + QH + + + P+++ +D TGEI L FF+ + L+ + Sbjct: 73 GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 132 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 EG + V+GK++ R MVHP YI + PL+E VY L GLS + I EA Sbjct: 133 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 192 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L+R+PVLPEWI+ LL ++ FP+ +A N +H P D S R RLAYDE LAGQ+ Sbjct: 193 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 252 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 AL L+R + ++ G P+ G I +I+R++P+ TK+QE A+++I+ D+ RMLR+L Sbjct: 253 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 312 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKT+V L++MA A E+GGQ+ +MAP +LA+QH+ I + + ++TG Sbjct: 313 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 372 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R LE + G+ I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K Sbjct: 373 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 432 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++ Sbjct: 433 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 492 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 +SEG+K YWICP +EE + S ERF SL F I +IHGRMS +K+ M +FK Sbjct: 493 VSEGQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 552 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY Sbjct: 553 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 612 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PL + + RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A E H LLEI Sbjct: 613 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 672 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 ARKDA++IL DPDL S RGQ++R+LLYL+ +EA + +RAG Sbjct: 673 ARKDARYILASDPDLESERGQALRVLLYLFGRDEAIRLLRAG 714 >gi|256015357|ref|YP_003105366.1| ATP-dependent DNA helicase RecG [Brucella microti CCM 4915] gi|255998017|gb|ACU49704.1| ATP-dependent DNA helicase RecG [Brucella microti CCM 4915] Length = 706 Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/702 (48%), Positives = 471/702 (67%), Gaps = 2/702 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59 MRPS L+P FA + + G+G K ++ L K++ E + LLF P S IDR RP Sbjct: 5 MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64 Query: 60 KISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118 I+ E IVT+ + QH + + + P+++ +D TGEI L FF+ + L+ + Sbjct: 65 GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 EG + V+GK++ R MVHP YI + PL+E VY L GLS + I EA Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 184 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L+R+PVLPEWI+ LL ++ FP+ +A N +H P D S R RLAYDE LAGQ+ Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 AL L+R + ++ G P+ G I +I+R++P+ TK+QE A+++I+ D+ RMLR+L Sbjct: 245 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKT+V L++MA A E+GGQ+ +MAP +LA+QH+ I + + ++TG Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R LE + G+ I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K Sbjct: 365 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++ Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 484 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 +SEG+K YWICP +EE + S ERF SL F I +IHGRMS +K+ M +FK Sbjct: 485 VSEGQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PL + + RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A E H LLEI Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 ARKDA++IL DPDL S RGQ++R+LLYL+ +EA + +RAG Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLFGRDEAIRLLRAG 706 >gi|306845912|ref|ZP_07478480.1| ATP-dependent DNA helicase RecG [Brucella sp. BO1] gi|306273804|gb|EFM55642.1| ATP-dependent DNA helicase RecG [Brucella sp. BO1] Length = 706 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/702 (48%), Positives = 471/702 (67%), Gaps = 2/702 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59 MRPS L+P FA + + G+G K ++ L K++ E + LLF P S IDR RP Sbjct: 5 MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64 Query: 60 KISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118 I+ E IVT+ + QH + + + P+++ +D TGEI L FF+ + L+ + Sbjct: 65 GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 EG + V+GK++ R MVHP YI + PL+E VY L GLS + I EA Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 184 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L+R+PVLPEWI+ LL ++ FP+ +A N +H P D S R RLAYDE LAGQ+ Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 AL L+R + ++ G P+ G I +I+R++P+ TK+QE A+++I+ D+ RMLR+L Sbjct: 245 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKT+V L++MA A E+GGQ+ +MAP +LA+QH+ I + + ++TG Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R LE + G+ I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K Sbjct: 365 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++ Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 484 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 +S+G+K YWICP +EE + S ERF SL F I +IHGRMS +K+ M +FK Sbjct: 485 VSDGQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY Sbjct: 545 EGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PL + + RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A E H LLEI Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 ARKDA++IL DPDL S RGQ++R+LLYL+ +EA + +RAG Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLFGRDEAIRLLRAG 706 >gi|254698844|ref|ZP_05160672.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 2 str. 86/8/59] gi|260763325|ref|ZP_05875657.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 2 str. 86/8/59] gi|260673746|gb|EEX60567.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 2 str. 86/8/59] Length = 706 Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/702 (48%), Positives = 470/702 (66%), Gaps = 2/702 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59 MRPS L+P FA + + G+G K ++ L K++ E + LLF P S IDR RP Sbjct: 5 MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64 Query: 60 KISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118 I+ E IVT+ + QH + + + P+++ +D TGEI L FF+ + L+ + Sbjct: 65 GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 EG + V+GK++ R MVHP YI + PL+E VY L GLS + I EA Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 184 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L+R+PVLPEWI+ LL ++ FP+ +A N +H P D S R RLAYDE LAGQ+ Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 AL L+R + ++ G P+ G I +I+R++P+ TK+QE A+++I+ D+ RMLR+L Sbjct: 245 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKT+V L++MA A E+GGQ+ +MAP +LA+QH+ I + + ++TG Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R LE + G+ I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K Sbjct: 365 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++ Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 484 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 +SE +K YWICP +EE + S ERF SL F I +IHGRMS +K+ M +FK Sbjct: 485 VSEDQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PL + + RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A E H LLEI Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 ARKDA++IL DPDL S RGQ++R+LLYL+ NEA + +RAG Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLFGRNEAIRLLRAG 706 >gi|17989031|ref|NP_541664.1| ATP-dependent DNA helicase RecG [Brucella melitensis bv. 1 str. 16M] gi|237817109|ref|ZP_04596101.1| ATP-dependent DNA helicase RecG [Brucella abortus str. 2308 A] gi|17984872|gb|AAL53928.1| ATP-dependent DNA helicase recg [Brucella melitensis bv. 1 str. 16M] gi|237787922|gb|EEP62138.1| ATP-dependent DNA helicase RecG [Brucella abortus str. 2308 A] Length = 714 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/702 (48%), Positives = 470/702 (66%), Gaps = 2/702 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59 MRPS L+P FA + + G+G K ++ L K++ E + LLF P S IDR RP Sbjct: 13 MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 72 Query: 60 KISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118 I+ E IVT+ + QH + + + P+++ +D TGEI L FF+ + L+ + Sbjct: 73 GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 132 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 EG + V+GK++ R MVHP YI + PL+E VY L GLS + I EA Sbjct: 133 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 192 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L+R+PVLPEWI+ LL ++ FP+ +A N +H P D S R RLAYDE LAGQ+ Sbjct: 193 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 252 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 AL L+R + ++ G P+ G I +I+R++P+ TK+QE A+++I+ D+ RMLR+L Sbjct: 253 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 312 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKT+V L++MA A E+GGQ+ +MAP +LA+QH+ I + + ++TG Sbjct: 313 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 372 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R LE + G+ I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K Sbjct: 373 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 432 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++ Sbjct: 433 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 492 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 +SE +K YWICP +EE + S ERF SL F I +IHGRMS +K+ M +FK Sbjct: 493 VSEDQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 552 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY Sbjct: 553 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 612 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PL + + RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A E H LLEI Sbjct: 613 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 672 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 ARKDA++IL DPDL S RGQ++R+LLYL+ +EA + +RAG Sbjct: 673 ARKDARYILASDPDLESERGQALRVLLYLFGRDEAIRLLRAG 714 >gi|23500325|ref|NP_699765.1| ATP-dependent DNA helicase RecG [Brucella suis 1330] gi|62317562|ref|YP_223415.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 1 str. 9-941] gi|83269543|ref|YP_418834.1| ATP-dependent DNA helicase RecG [Brucella melitensis biovar Abortus 2308] gi|161620643|ref|YP_001594529.1| ATP-dependent DNA helicase RecG [Brucella canis ATCC 23365] gi|189022816|ref|YP_001932557.1| ATP-dependent DNA helicase RecG [Brucella abortus S19] gi|225686367|ref|YP_002734339.1| ATP-dependent DNA helicase RecG [Brucella melitensis ATCC 23457] gi|254691059|ref|ZP_05154313.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 6 str. 870] gi|254695635|ref|ZP_05157463.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 3 str. Tulya] gi|254702956|ref|ZP_05164784.1| ATP-dependent DNA helicase RecG [Brucella suis bv. 3 str. 686] gi|254732291|ref|ZP_05190869.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 4 str. 292] gi|256043476|ref|ZP_05446405.1| ATP-dependent DNA helicase RecG [Brucella melitensis bv. 1 str. Rev.1] gi|256059226|ref|ZP_05449432.1| ATP-dependent DNA helicase RecG [Brucella neotomae 5K33] gi|256111502|ref|ZP_05452516.1| ATP-dependent DNA helicase RecG [Brucella melitensis bv. 3 str. Ether] gi|256256244|ref|ZP_05461780.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 9 str. C68] gi|256262492|ref|ZP_05465024.1| ATP-dependent DNA helicase RecG [Brucella melitensis bv. 2 str. 63/9] gi|260544799|ref|ZP_05820620.1| ATP-dependent DNA helicase RecG [Brucella abortus NCTC 8038] gi|260564672|ref|ZP_05835157.1| ATP-dependent DNA helicase RecG [Brucella melitensis bv. 1 str. 16M] gi|260568132|ref|ZP_05838601.1| ATP-dependent DNA helicase RecG [Brucella suis bv. 4 str. 40] gi|260756656|ref|ZP_05869004.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 6 str. 870] gi|260760087|ref|ZP_05872435.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 4 str. 292] gi|260882473|ref|ZP_05894087.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 9 str. C68] gi|261216033|ref|ZP_05930314.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 3 str. Tulya] gi|261323176|ref|ZP_05962373.1| ATP-dependent DNA helicase RecG [Brucella neotomae 5K33] gi|261753563|ref|ZP_05997272.1| ATP-dependent DNA helicase RecG [Brucella suis bv. 3 str. 686] gi|265989894|ref|ZP_06102451.1| ATP-dependent DNA helicase RecG [Brucella melitensis bv. 1 str. Rev.1] gi|265993000|ref|ZP_06105557.1| ATP-dependent DNA helicase RecG [Brucella melitensis bv. 3 str. Ether] gi|297249602|ref|ZP_06933303.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 5 str. B3196] gi|23463938|gb|AAN33770.1| ATP-dependent DNA helicase RecG [Brucella suis 1330] gi|62197755|gb|AAX76054.1| RecG, ATP-dependent DNA helicase [Brucella abortus bv. 1 str. 9-941] gi|82939817|emb|CAJ12825.1| DEAD/DEAH box helicase:RecA bacterial DNA recombination protein:Helicase, C-terminal:ATP/GTP-binding site motif A (P-loop):Ha [Brucella melitensis biovar Abortus 2308] gi|161337454|gb|ABX63758.1| ATP-dependent DNA helicase RecG [Brucella canis ATCC 23365] gi|189021390|gb|ACD74111.1| ATP-dependent DNA helicase RecG [Brucella abortus S19] gi|225642472|gb|ACO02385.1| ATP-dependent DNA helicase RecG [Brucella melitensis ATCC 23457] gi|260098070|gb|EEW81944.1| ATP-dependent DNA helicase RecG [Brucella abortus NCTC 8038] gi|260152315|gb|EEW87408.1| ATP-dependent DNA helicase RecG [Brucella melitensis bv. 1 str. 16M] gi|260154797|gb|EEW89878.1| ATP-dependent DNA helicase RecG [Brucella suis bv. 4 str. 40] gi|260670405|gb|EEX57345.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 4 str. 292] gi|260676764|gb|EEX63585.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 6 str. 870] gi|260872001|gb|EEX79070.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 9 str. C68] gi|260917640|gb|EEX84501.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 3 str. Tulya] gi|261299156|gb|EEY02653.1| ATP-dependent DNA helicase RecG [Brucella neotomae 5K33] gi|261743316|gb|EEY31242.1| ATP-dependent DNA helicase RecG [Brucella suis bv. 3 str. 686] gi|262763870|gb|EEZ09902.1| ATP-dependent DNA helicase RecG [Brucella melitensis bv. 3 str. Ether] gi|263000563|gb|EEZ13253.1| ATP-dependent DNA helicase RecG [Brucella melitensis bv. 1 str. Rev.1] gi|263092229|gb|EEZ16526.1| ATP-dependent DNA helicase RecG [Brucella melitensis bv. 2 str. 63/9] gi|297173471|gb|EFH32835.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 5 str. B3196] gi|326410738|gb|ADZ67802.1| ATP-dependent DNA helicase RecG [Brucella melitensis M28] gi|326554031|gb|ADZ88670.1| ATP-dependent DNA helicase RecG [Brucella melitensis M5-90] Length = 706 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/702 (48%), Positives = 470/702 (66%), Gaps = 2/702 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59 MRPS L+P FA + + G+G K ++ L K++ E + LLF P S IDR RP Sbjct: 5 MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64 Query: 60 KISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118 I+ E IVT+ + QH + + + P+++ +D TGEI L FF+ + L+ + Sbjct: 65 GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 EG + V+GK++ R MVHP YI + PL+E VY L GLS + I EA Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 184 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L+R+PVLPEWI+ LL ++ FP+ +A N +H P D S R RLAYDE LAGQ+ Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 AL L+R + ++ G P+ G I +I+R++P+ TK+QE A+++I+ D+ RMLR+L Sbjct: 245 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKT+V L++MA A E+GGQ+ +MAP +LA+QH+ I + + ++TG Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R LE + G+ I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K Sbjct: 365 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++ Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 484 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 +SE +K YWICP +EE + S ERF SL F I +IHGRMS +K+ M +FK Sbjct: 485 VSEDQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PL + + RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A E H LLEI Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 ARKDA++IL DPDL S RGQ++R+LLYL+ +EA + +RAG Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLFGRDEAIRLLRAG 706 >gi|225629077|ref|ZP_03787110.1| ATP-dependent DNA helicase RecG [Brucella ceti str. Cudo] gi|225615573|gb|EEH12622.1| ATP-dependent DNA helicase RecG [Brucella ceti str. Cudo] Length = 714 Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/702 (48%), Positives = 469/702 (66%), Gaps = 2/702 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59 MRPS L+P FA + + G+G K ++ L K++ E + LLF P S IDR RP Sbjct: 13 MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 72 Query: 60 KISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118 I+ E IVT+ + QH + + + P+++ +D TGEI L FF+ + L+ + Sbjct: 73 GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 132 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 EG + V+GK++ R MVHP YI + PL+E VY L GLS + I EA Sbjct: 133 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 192 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L+R+PVLPEWI+ LL ++ FP+ +A N +H P D S R RLAYDE LAGQ+ Sbjct: 193 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 252 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 AL L+R + ++ G P+ G I +I+R++P+ TK+QE A+++I+ D+ RMLR+L Sbjct: 253 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 312 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKT+V L++MA A E+GGQ+ +MAP +LA+QH+ I + + ++TG Sbjct: 313 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 372 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R LE + G+ I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K Sbjct: 373 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 432 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++ Sbjct: 433 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 492 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 +SE +K YWICP +EE + S ERF SL F I +IHGRMS +K+ M +FK Sbjct: 493 VSEDQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 552 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY Sbjct: 553 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 612 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PL + + RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A E H LLEI Sbjct: 613 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 672 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 ARKDA++IL DPDL S RGQ++R+LLYL +EA + +RAG Sbjct: 673 ARKDARYILASDPDLESERGQALRVLLYLLGRDEAIRLLRAG 714 >gi|254711150|ref|ZP_05172961.1| ATP-dependent DNA helicase RecG [Brucella pinnipedialis B2/94] gi|256029531|ref|ZP_05443145.1| ATP-dependent DNA helicase RecG [Brucella pinnipedialis M292/94/1] gi|256157726|ref|ZP_05455644.1| ATP-dependent DNA helicase RecG [Brucella ceti M490/95/1] gi|256253303|ref|ZP_05458839.1| ATP-dependent DNA helicase RecG [Brucella ceti B1/94] gi|260167379|ref|ZP_05754190.1| ATP-dependent DNA helicase RecG [Brucella sp. F5/99] gi|261220417|ref|ZP_05934698.1| ATP-dependent DNA helicase RecG [Brucella ceti B1/94] gi|261318742|ref|ZP_05957939.1| ATP-dependent DNA helicase RecG [Brucella pinnipedialis B2/94] gi|261756787|ref|ZP_06000496.1| ATP-dependent DNA helicase RecG [Brucella sp. F5/99] gi|265986540|ref|ZP_06099097.1| ATP-dependent DNA helicase RecG [Brucella pinnipedialis M292/94/1] gi|265996232|ref|ZP_06108789.1| ATP-dependent DNA helicase RecG [Brucella ceti M490/95/1] gi|260919001|gb|EEX85654.1| ATP-dependent DNA helicase RecG [Brucella ceti B1/94] gi|261297965|gb|EEY01462.1| ATP-dependent DNA helicase RecG [Brucella pinnipedialis B2/94] gi|261736771|gb|EEY24767.1| ATP-dependent DNA helicase RecG [Brucella sp. F5/99] gi|262550529|gb|EEZ06690.1| ATP-dependent DNA helicase RecG [Brucella ceti M490/95/1] gi|264658737|gb|EEZ28998.1| ATP-dependent DNA helicase RecG [Brucella pinnipedialis M292/94/1] Length = 706 Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/702 (48%), Positives = 469/702 (66%), Gaps = 2/702 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59 MRPS L+P FA + + G+G K ++ L K++ E + LLF P S IDR RP Sbjct: 5 MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64 Query: 60 KISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118 I+ E IVT+ + QH + + + P+++ +D TGEI L FF+ + L+ + Sbjct: 65 GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 EG + V+GK++ R MVHP YI + PL+E VY L GLS + I EA Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 184 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L+R+PVLPEWI+ LL ++ FP+ +A N +H P D S R RLAYDE LAGQ+ Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 AL L+R + ++ G P+ G I +I+R++P+ TK+QE A+++I+ D+ RMLR+L Sbjct: 245 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKT+V L++MA A E+GGQ+ +MAP +LA+QH+ I + + ++TG Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R LE + G+ I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K Sbjct: 365 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++ Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 484 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 +SE +K YWICP +EE + S ERF SL F I +IHGRMS +K+ M +FK Sbjct: 485 VSEDQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PL + + RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A E H LLEI Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 ARKDA++IL DPDL S RGQ++R+LLYL +EA + +RAG Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLLGRDEAIRLLRAG 706 >gi|254712392|ref|ZP_05174203.1| ATP-dependent DNA helicase RecG [Brucella ceti M644/93/1] gi|254715464|ref|ZP_05177275.1| ATP-dependent DNA helicase RecG [Brucella ceti M13/05/1] gi|261217197|ref|ZP_05931478.1| ATP-dependent DNA helicase RecG [Brucella ceti M13/05/1] gi|261320068|ref|ZP_05959265.1| ATP-dependent DNA helicase RecG [Brucella ceti M644/93/1] gi|260922286|gb|EEX88854.1| ATP-dependent DNA helicase RecG [Brucella ceti M13/05/1] gi|261292758|gb|EEX96254.1| ATP-dependent DNA helicase RecG [Brucella ceti M644/93/1] Length = 706 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/702 (48%), Positives = 469/702 (66%), Gaps = 2/702 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59 MRPS L+P FA + + G+G K ++ L K++ E + LLF P S IDR RP Sbjct: 5 MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64 Query: 60 KISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118 I+ E IVT+ + QH + + + P+++ +D TGE+ L FF+ + L+ + Sbjct: 65 GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGELALTFFHAQLPWLQKMLP 124 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 EG + V+GK++ R MVHP YI + PL+E VY L GLS + I EA Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 184 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L+R+PVLPEWI+ LL ++ FP+ +A N +H P D S R RLAYDE LAGQ+ Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 AL L+R + ++ G P+ G I +I+R++P+ TK+QE A+++I+ D+ RMLR+L Sbjct: 245 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKT+V L++MA A E+GGQ+ +MAP +LA+QH+ I + + ++TG Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R LE + G+ I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K Sbjct: 365 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++ Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 484 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 +SE +K YWICP +EE + S ERF SL F I +IHGRMS +K+ M +FK Sbjct: 485 VSEDQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PL + + RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A E H LLEI Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 ARKDA++IL DPDL S RGQ++R+LLYL +EA + +RAG Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLLGRDEAIRLLRAG 706 >gi|163844733|ref|YP_001622388.1| ATP-dependent DNA helicase RecG [Brucella suis ATCC 23445] gi|163675456|gb|ABY39566.1| ATP-dependent DNA helicase RecG [Brucella suis ATCC 23445] Length = 706 Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/702 (48%), Positives = 469/702 (66%), Gaps = 2/702 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59 MRPS L+P FA + + G+G K ++ L K++ E + LLF P S IDR RP Sbjct: 5 MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64 Query: 60 KISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118 I+ E IVT+ + QH + + + P+++ +D TGEI L FF+ + L+ + Sbjct: 65 GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 EG + V+GK++ R MVHP YI + PL+E VY L GLS + I EA Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 184 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L+R+PVLPEWI+ LL ++ FP+ +A N +H P D S R RLAYDE LAGQ+ Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 AL L+R + ++ G P+ G I +I+R++P+ TK+QE A+++I+ D+ RMLR+L Sbjct: 245 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKT+V L++MA A E+GGQ+ +MAP +LA+QH+ I + + ++TG Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R LE + G+ I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K Sbjct: 365 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ ++ER++ Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGGLVERIRKA 484 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 +SE +K YWICP +EE + S ERF SL F I +IHGRMS +K+ M +FK Sbjct: 485 VSEDQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PL + + RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A E H LLEI Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 ARKDA++IL DPDL S RGQ++R+LLYL+ +EA + +RAG Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLFGRDEAIRLLRAG 706 >gi|148558658|ref|YP_001257569.1| ATP-dependent DNA helicase RecG [Brucella ovis ATCC 25840] gi|148369943|gb|ABQ62815.1| ATP-dependent DNA helicase RecG [Brucella ovis ATCC 25840] Length = 706 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/702 (48%), Positives = 469/702 (66%), Gaps = 2/702 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59 MRPS L+P FA + + G+G K ++ L K++ E + LLF P S IDR RP Sbjct: 5 MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64 Query: 60 KISEISEERIVTITGYISQ-HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118 I+ E IVT+ + Q + + + P+++ +D TGEI L FF+ + L+ + Sbjct: 65 GIAFAQEGAIVTLEVIVDQRQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 EG + V+GK++ R MVHP YI + PL+E VY L GLS + I EA Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 184 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L+R+PVLPEWI+ LL ++ FP+ +A N +H P D S R RLAYDE LAGQ+ Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 AL L+R + ++ G P+ G I +I+R++P+ TK+QE A+++I+ D+ RMLR+L Sbjct: 245 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKT+V L++MA A E+GGQ+ +MAP +LA+QH+ I + + ++TG Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R LE + G+ I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K Sbjct: 365 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++ Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 484 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 +SE +K YWICP +EE + S ERF SL F I +IHGRMS +K+ M +FK Sbjct: 485 VSEDQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PL + + RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A E H LLEI Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 ARKDA++IL DPDL S RGQ++R+LLYL+ +EA + +RAG Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLFGRDEAIRLLRAG 706 >gi|254699818|ref|ZP_05161646.1| ATP-dependent DNA helicase RecG [Brucella suis bv. 5 str. 513] gi|261750290|ref|ZP_05993999.1| ATP-dependent DNA helicase RecG [Brucella suis bv. 5 str. 513] gi|261740043|gb|EEY27969.1| ATP-dependent DNA helicase RecG [Brucella suis bv. 5 str. 513] Length = 706 Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/702 (48%), Positives = 469/702 (66%), Gaps = 2/702 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59 MRPS L+P FA + + G+G K ++ L K++ E + LLF P S IDR RP Sbjct: 5 MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64 Query: 60 KISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118 I+ E IVT+ + QH + + + P+++ +D TGEI L FF+ + L+ + Sbjct: 65 GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 EG + V+GK++ R MVHP YI + PL+E VY L LS + I EA Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTADLSPKTLGRAIKEA 184 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L+R+PVLPEWI+ LL ++ FP+ +A N +H P D S R RLAYDE LAGQ+ Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 AL L+R + ++ G P+ G I +I+R++P+ TK+QE A+++I+ D+ RMLR+L Sbjct: 245 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKT+V L++MA A E+GGQ+ +MAP +LA+QH+ I + + ++TG Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R LE + G+ I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K Sbjct: 365 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++ Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 484 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 +SE +K YWICP +EE + S ERF SL F I +IHGRMS +K+ M +FK Sbjct: 485 VSEDQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PL + + RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A E H LLEI Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 ARKDA++IL DPDL S RGQ++R+LLYL+ +EA + +RAG Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLFGRDEAIRLLRAG 706 >gi|294853622|ref|ZP_06794294.1| ATP-dependent DNA helicase RecG [Brucella sp. NVSL 07-0026] gi|294819277|gb|EFG36277.1| ATP-dependent DNA helicase RecG [Brucella sp. NVSL 07-0026] Length = 706 Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/702 (48%), Positives = 469/702 (66%), Gaps = 2/702 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59 MRPS L+P FA + + G+G K ++ L K++ E + LLF P S IDR RP Sbjct: 5 MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64 Query: 60 KISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118 I+ E IVT+ + QH + + + P+++ +D TGEI L FF+ + L+ + Sbjct: 65 GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 EG + V+GK++ R MVHP YI + PL+E VY L LS + I EA Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTASLSPKTLGRAIKEA 184 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L+R+PVLPEWI+ LL ++ FP+ +A N +H P D S R RLAYDE LAGQ+ Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 AL L+R + ++ G P+ G I +I+R++P+ TK+QE A+++I+ D+ RMLR+L Sbjct: 245 ALSLVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKT+V L++MA A E+GGQ+ +MAP +LA+QH+ I + + ++TG Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R LE + G+ I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K Sbjct: 365 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++ Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 484 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 +SE +K YWICP +EE + S ERF SL F I +IHGRMS +K+ M +FK Sbjct: 485 VSEDQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PL + + RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A E H LLEI Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 ARKDA++IL DPDL S RGQ++R+LLYL+ +EA + +RAG Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLFGRDEAIRLLRAG 706 >gi|254705926|ref|ZP_05167754.1| ATP-dependent DNA helicase RecG [Brucella pinnipedialis M163/99/10] gi|261313354|ref|ZP_05952551.1| ATP-dependent DNA helicase RecG [Brucella pinnipedialis M163/99/10] gi|261302380|gb|EEY05877.1| ATP-dependent DNA helicase RecG [Brucella pinnipedialis M163/99/10] Length = 706 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/702 (48%), Positives = 468/702 (66%), Gaps = 2/702 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59 MRPS L+P FA + + G+G K ++ L K++ E + LLF P S IDR RP Sbjct: 5 MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64 Query: 60 KISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118 I+ E IVT+ + QH + + + P+++ +D TGEI L FF+ + L+ + Sbjct: 65 GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 EG + V+GK++ R MVHP YI + PL+E VY L GLS + I EA Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 184 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L+R+PVLPEWI+ LL ++ FP+ +A N +H P D S R RLAYDE LAGQ+ Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 AL L+R + ++ G P+ G I +I+R++P+ TK+QE A+++I+ D+ RMLR+L Sbjct: 245 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKT+V L++MA A E+GGQ+ +MAP +LA+QH+ I + + ++TG Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R LE + G+ I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K Sbjct: 365 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++ Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 484 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 +SE +K YWICP +EE + S E F SL F I +IHGRMS +K+ M +FK Sbjct: 485 VSEDQKIYWICPLVEESEVVELTSAEEHFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PL + + RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A E H LLEI Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 ARKDA++IL DPDL S RGQ++R+LLYL +EA + +RAG Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLLGRDEAIRLLRAG 706 >gi|13470981|ref|NP_102550.1| ATP-dependent DNA helicase RecG [Mesorhizobium loti MAFF303099] gi|14021724|dbj|BAB48336.1| ATP-dependent DNA helicase [Mesorhizobium loti MAFF303099] Length = 702 Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/702 (48%), Positives = 476/702 (67%), Gaps = 2/702 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANET-RFIDLLFYHPSSFIDRHYRP 59 MRPS L+PLF P+++ GVG K + K++ + R DLLF P + IDR RP Sbjct: 1 MRPSILDPLFVPITSLAGVGPKVGALIEKVVTADLGDRAARAGDLLFVLPHTVIDRRSRP 60 Query: 60 KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118 I+ +E +IVT+ I +H R PY++ +D TGEI L FF+ L+ Sbjct: 61 GIAGSAEGQIVTLDVRIDRHQPPPRGNRSVPYRVYAHDDTGEIGLTFFHAHAAYLEKAMP 120 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 G + V+G+++ R MVHP +I S+ N PL+E VY L GLS + ++ I +A Sbjct: 121 VGEHVVVSGRMEWFNGRPTMVHPDHIALASEAENLPLVEPVYPLTAGLSGKVLRRAIGQA 180 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L+RLP LPEW + +++ +FP+ A+A IHNP D A RLAYDELLAGQ+ Sbjct: 181 LARLPELPEWQDVAFMRRHTFPTFADALTRIHNPADPIDVSIEGAAWRRLAYDELLAGQV 240 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 +L L+R + ++ G P+ +G+I +K+ +P+S T SQE A+ +I D++ RMLR+L Sbjct: 241 SLALVRAKIRRLSGRPLVGDGRIVEKLRAALPYSLTASQEFALAEINADLADPERMLRLL 300 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKT+VAL+AMA AVEAGGQA +MAP ILA+QH I + + + I+TG Sbjct: 301 QGDVGSGKTVVALLAMARAVEAGGQAALMAPTEILARQHLATIAPFAAKVGLRIAILTGR 360 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R + L +A G+ I++GTHALFQ+++ ++ L+L ++DEQHRFGV QRL +T K Sbjct: 361 EKGRERTETLAGLASGEIDIVVGTHALFQETVTFHDLVLAVIDEQHRFGVHQRLAITAKG 420 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKPAGR+PI+TV +P+ R+DE++ R++ Sbjct: 421 DAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPAGRQPIRTVTLPLERLDELVARMQDA 480 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 ++ G+K YWICP +EE +E S +RF SL F I ++HGRM +K+ M +FK Sbjct: 481 VAGGQKIYWICPLVEESEEIKLMSAEDRFASLKPLFGDRIGLVHGRMKGAEKDEAMRAFK 540 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G ++LIATTVIEVG+DV DA++++IE+AE FGLAQLHQLRGRVGRG++ SSC+LLY Sbjct: 541 EGETRILIATTVIEVGVDVPDATVMVIEHAERFGLAQLHQLRGRVGRGDKPSSCVLLYKD 600 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PL + + RLSV++ TEDGFLIAEEDLK R EGE+LG +QSG P F +A+ E H LLE Sbjct: 601 PLGETAKRRLSVMRETEDGFLIAEEDLKLRGEGELLGTRQSGTPGFQVARIEAHADLLEA 660 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 AR DA+ IL++DP+L S RG+++R+LLYL+ +EA + +RAG Sbjct: 661 ARDDARLILSRDPELQSDRGEALRLLLYLFGRDEAVRLLRAG 702 >gi|153010963|ref|YP_001372177.1| ATP-dependent DNA helicase RecG [Ochrobactrum anthropi ATCC 49188] gi|151562851|gb|ABS16348.1| ATP-dependent DNA helicase RecG [Ochrobactrum anthropi ATCC 49188] Length = 706 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/702 (48%), Positives = 469/702 (66%), Gaps = 2/702 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59 MRPS L+P FA + + G+G K + L K++ E + LLF P S IDR RP Sbjct: 5 MRPSMLDPFFASVRSLSGIGPKVAALLGKLLGTDIPGAEPKVGQLLFLAPHSVIDRRNRP 64 Query: 60 KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118 I+ E IVT+ + QH + P+++ +D TGEI L FF+ + L+ + Sbjct: 65 GIALAQEGAIVTLEVIVDQHQPAPPGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 EG + V+GK++ R MVHP YI N P++E VY L GLS + + EA Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASLEDAANLPMVEPVYPLTAGLSPKTLARAVKEA 184 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L+R+P L EWI+ LL ++ F S ++ N +H P D S +R RLAYDE LAGQ+ Sbjct: 185 LTRVPPLQEWIDGPLLARERFTSFQQSLNTLHLPEDPSDIALESISRRRLAYDEFLAGQL 244 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 AL L+R + ++ G P+ G+I +I+R++P+ T+ Q+ A+++I+ D+ RMLR+L Sbjct: 245 ALALVRAKTRRLSGRPLEGTGRIVAEIMRHLPYRLTEGQDQAVREIITDLKSPERMLRLL 304 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKT+V L++MA A E+GGQ+ +MAP +LA+QH+ I + + ++TG Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKTALLTGR 364 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R LE + G+ I+IGTHALFQ+ ++Y+ L+LVI+DEQHRFGV QRL LT K Sbjct: 365 EKGRDRNAVLEGLKTGEIDIVIGTHALFQEKVEYHDLVLVIIDEQHRFGVHQRLMLTAKG 424 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKPAGR+PI T I+P+ R+ E++ER++ Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPAGRQPITTAIVPMERMGELVERIRKA 484 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 ++EG+K YWICP +EE + S ERF +L F I +IHGRMS +K+ M +FK Sbjct: 485 VAEGQKIYWICPLVEESEVVELTSAEERFENLKPVFGDRIGLIHGRMSGAEKDEAMRAFK 544 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PL + + RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A E H LLEI Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 ARKDA++ILT DPDL S RGQ++R+LLYL+ +EA + +RAG Sbjct: 665 ARKDARYILTSDPDLESERGQALRVLLYLFGRDEAIRLLRAG 706 >gi|260463947|ref|ZP_05812143.1| ATP-dependent DNA helicase RecG [Mesorhizobium opportunistum WSM2075] gi|259030322|gb|EEW31602.1| ATP-dependent DNA helicase RecG [Mesorhizobium opportunistum WSM2075] Length = 702 Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/702 (48%), Positives = 472/702 (67%), Gaps = 2/702 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANET-RFIDLLFYHPSSFIDRHYRP 59 MRPS L+PLF P+++ GVG K + K++ + R DLLF P + IDR RP Sbjct: 1 MRPSILDPLFVPITSLAGVGPKVGALIEKVVAADLGDRAARAGDLLFVLPHTVIDRRNRP 60 Query: 60 KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118 I+ +E IVT+ I +H R PY++ +D TGEI L FF+ L+ Sbjct: 61 GIALAAEGAIVTLEVRIDRHQPPPRGNRSVPYRVFAHDDTGEIGLTFFHAHASYLEKAMP 120 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 G + V+G+++ R MVHP +I S+ N PL+E VY L GLS + ++ I +A Sbjct: 121 VGEHVVVSGRMEWFNGRPTMVHPDHIALASEAENLPLVEPVYPLTAGLSGKVLRRAIGQA 180 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L+RLP LPEW + L+++ +FP+ +A IHNP D A RLAYDELLAGQ+ Sbjct: 181 LARLPELPEWQDGALMRRHTFPTFGDALARIHNPADPIDVSIDGAAWRRLAYDELLAGQV 240 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 +L L+R + ++ G P+ +G I +K+ +P+S T SQE A+ +I D++ RMLR+L Sbjct: 241 SLALVRAKIRRLSGRPLVGDGSIVEKLRAALPYSLTASQEFALAEINADLADPERMLRLL 300 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKT+VAL+AMA AVEAGGQA +MAP ILA+QH I + + + I+TG Sbjct: 301 QGDVGSGKTVVALLAMARAVEAGGQAALMAPTEILARQHLATIAPLADSIGLRIAILTGR 360 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R L +A G+ I++GTHALFQ+++ + L+L ++DEQHRFGV QRL +T K Sbjct: 361 EKGRERADTLAGLASGEIDIVVGTHALFQETVTFDDLVLAVIDEQHRFGVHQRLAITAKG 420 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKPAGR+PI+TV +P+ R+DE++ R++ Sbjct: 421 DAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPAGRQPIRTVTLPLERLDELVGRMEDA 480 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 ++ G+K YWICP +EE +E S +RF SL F I ++HGRM +K+ M +FK Sbjct: 481 VAGGQKIYWICPLVEESEEIKLMSAEDRFASLKPLFGDRIGLVHGRMKGAEKDEAMRAFK 540 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G ++LIATTVIEVG+DV DA++++IE+AE FGLAQLHQLRGRVGRG++ SSC+LLY Sbjct: 541 QGETRILIATTVIEVGVDVPDATVMVIEHAERFGLAQLHQLRGRVGRGDKPSSCVLLYKD 600 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PL + + RLSV++ TEDGFLIAEEDLK R EGE+LG +QSG P F +A+ E H LLE Sbjct: 601 PLGETAKRRLSVMRETEDGFLIAEEDLKLRGEGELLGTRQSGTPGFQVARIEAHADLLEA 660 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 AR DA+ IL++DP+L S RG+++R+LLYL+ +EA + +RAG Sbjct: 661 ARDDARLILSRDPELQSDRGEALRLLLYLFGRDEAVRLLRAG 702 >gi|319783818|ref|YP_004143294.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169706|gb|ADV13244.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 702 Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/702 (47%), Positives = 470/702 (66%), Gaps = 2/702 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANET-RFIDLLFYHPSSFIDRHYRP 59 MRP+ L+PLF P+++ GVG K + K++ + R DLLF P + IDR RP Sbjct: 1 MRPTILDPLFVPITSLAGVGPKVGALIEKVVPADLGDRAARAGDLLFVLPHTVIDRRSRP 60 Query: 60 KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118 I+ +E +IVT+ I +H R PY++ +D TGEI L FF+ L+ Sbjct: 61 GIAGSAEGQIVTLDVRIDRHQPPPRGNRSVPYRVFAHDDTGEIALTFFHAHASYLEKAMP 120 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 EG + V+G+++ R MVHP +I S+ N PL+E VY L GLS + ++ I +A Sbjct: 121 EGEHVVVSGRMEWFNGRPSMVHPDHIALASEAENLPLVEPVYPLTAGLSGKVLRRAIGQA 180 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L+R+P PEW + +++ +F ++ +A IHNP D A RLAYDELLA Q+ Sbjct: 181 LTRVPEFPEWQDGAFMRRHTFAAVGDALARIHNPADPIDVSIDGAAWRRLAYDELLASQV 240 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 +L L+R + ++ G P+ +G+I +K+ +P+S T SQE A+ +I D++ RMLR+L Sbjct: 241 SLALVRAKVRRLSGRPLVGDGRIVEKLRAALPYSLTSSQEFALAEINADLADPERMLRLL 300 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKT+VAL+AMA AVEAGGQA +MAP ILA+QH I + + I+TG Sbjct: 301 QGDVGSGKTVVALLAMARAVEAGGQAALMAPTEILARQHLATITPLAAKVGLRIAILTGR 360 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R L +A G+ I++GTHALFQ+++ ++ L+ ++DEQHRFGV QRL +T K Sbjct: 361 EKGRERADTLAGLASGEIDIVVGTHALFQETVTFHDLVFAVIDEQHRFGVHQRLAITAKG 420 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKPAGR+PI+TV +P+ R+DE++ R+ Sbjct: 421 DAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPAGRQPIRTVTLPLERLDELVARMVDA 480 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 ++ G+K YWICP +EE +E S +RF SL F I ++HGR+ +K+ M +FK Sbjct: 481 VAGGQKIYWICPLVEESEEIKLMSAEDRFASLKPLFGDRIGLVHGRLKGAEKDEAMRAFK 540 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G ++LIATTVIEVG+DV DA++++IE+AE FGLAQLHQLRGRVGRG++ SSC+LLY Sbjct: 541 QGETRILIATTVIEVGVDVPDATVMVIEHAERFGLAQLHQLRGRVGRGDKPSSCVLLYKD 600 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PL + + RLSV++ TEDGFLIAEEDLK R EGE+LG +QSG P F +A+ E H LLE Sbjct: 601 PLGETAKRRLSVMRETEDGFLIAEEDLKLRGEGELLGTRQSGTPGFQVARIEAHADLLEA 660 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 AR DA+ IL++DP+L S RG+++R+LLYL+ +EA + +RAG Sbjct: 661 ARDDARLILSRDPELQSQRGEALRLLLYLFGRDEAVRLLRAG 702 >gi|328543943|ref|YP_004304052.1| ATP-dependent DNA helicase RecG [polymorphum gilvum SL003B-26A1] gi|326413687|gb|ADZ70750.1| ATP-dependent DNA helicase RecG [Polymorphum gilvum SL003B-26A1] Length = 700 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/700 (45%), Positives = 457/700 (65%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRPS L+PLFAP+S GVG K + + ++ E DLLF+ P S IDR RP Sbjct: 1 MRPSVLDPLFAPVSVLPGVGPKIARLFATLLADTPGREPTVADLLFHLPHSVIDRRKRPG 60 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 ++ +VT+ + +H + PY++L +D TG I L+FF+ + + L+ V EG Sbjct: 61 VARCENGDVVTLDLVVERHLPSPRHGKAPYRVLASDATGTIALVFFHPRRDWLETVLPEG 120 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 + V+GK++ R MVHP YI + +E VY + GL+ +K ++ AL Sbjct: 121 ARRIVSGKVEWFSERPQMVHPDYILTAEEAEAMRAVEPVYPMTAGLAPKTLQKAVLGALE 180 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 RLP+LPEW++ ++ +P +A H PR+A D T RLAYDE LA Q+AL Sbjct: 181 RLPLLPEWLDPAFKARQGWPDFDQALRFAHRPREANDLVPTGATLRRLAYDEYLANQLAL 240 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L+R ++ G +G++ +IL +P++ T Q+ A+++I D+ +RMLR+LQG Sbjct: 241 ALVRANMRQLGGEARRPDGRLTARILAALPYALTAGQQQAVREIEADLRSPHRMLRLLQG 300 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVG+GKT+VAL+AMAA +E G QAV+MAP ILA+QH+ ++ + I + ++TG Sbjct: 301 DVGAGKTVVALLAMAAVIETGAQAVLMAPTEILARQHFASMEPLCRAAGIRIAVLTGRDS 360 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 RR + + G +++GTHALFQ S+ + L + +VDEQHRFGV QRL L+ K Sbjct: 361 AKTRRDTQDALQSGTIDLVVGTHALFQGSVAFRNLGIAVVDEQHRFGVHQRLALSAKGRG 420 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 VL+MTATPIPRTLVLT GD+D+S++TEKPAGRKP+ TV + ++R+ E++ R+K ++ Sbjct: 421 VDVLVMTATPIPRTLVLTCFGDMDVSRLTEKPAGRKPVTTVSVSLDRMGEMVARIKAAVA 480 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540 EG+K YW+CP +EE ++++ +V +R L + +A++HGRMS +K++ M +FK+G Sbjct: 481 EGQKVYWVCPLVEESEKTDLAAVEDRHRHLSQELKVPVALVHGRMSGEEKDAAMTAFKDG 540 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L+ATTVIEVG+DV DA+II+IE+AE FGLAQLHQLRGRVGRG+ SSC+LLY PL Sbjct: 541 AARVLVATTVIEVGVDVPDATIIVIEHAERFGLAQLHQLRGRVGRGDRPSSCVLLYKGPL 600 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + + RLSV++ T DGFLIAEEDL+ R EGEILG +QSG P F +A+ E H L+EIAR Sbjct: 601 GETAAARLSVMRETNDGFLIAEEDLRLRGEGEILGTRQSGTPGFRLARLEAHGDLMEIAR 660 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L DPDL RG ++R LLYL+ +EA + +RAG Sbjct: 661 DDARLVLETDPDLKGPRGAALRCLLYLFSRDEAIRLLRAG 700 >gi|114705015|ref|ZP_01437923.1| ATP-dependent DNA helicase [Fulvimarina pelagi HTCC2506] gi|114539800|gb|EAU42920.1| ATP-dependent DNA helicase [Fulvimarina pelagi HTCC2506] Length = 700 Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/701 (46%), Positives = 464/701 (66%), Gaps = 2/701 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP+ L+PLFA ++T GVG K + L ++ R DLLF+ PS IDR R + Sbjct: 1 MRPAILDPLFAAVTTLDGVGPKVAGLLQTLL-VRPGQTLRVRDLLFHLPSGLIDRRRREE 59 Query: 61 ISEISEERIVTITGYISQHSS-FQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I + IVT+T I +H + Q PY++ D TGEI L +F K L+N+ Sbjct: 60 ILSAGQGAIVTLTVRIDRHQPPGRAQSNAPYRVFAQDETGEIALTYFRAKAAWLENLLPV 119 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G K+ V+GK++ R MVHP ++ ++ N L+E +Y L GLS + ++ I +AL Sbjct: 120 GEKMLVSGKVEWFNGRAQMVHPDFVAPLAEAENHSLVEPIYPLTAGLSGKVLRRAIAQAL 179 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 + P +PEWIE +L++++FP + + +H+P A D + SPA RLAYDE LA Q+A Sbjct: 180 EKTPDMPEWIEPGVLKRQTFPGLKDGLARLHDPSDAIDLDPASPAFRRLAYDEFLANQLA 239 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L R++ + + G + +G + ++ +PF T++Q SA+ DIL DM RMLR+LQ Sbjct: 240 LTLSRQKMRGKSGRSLEGDGSLLARLKHALPFELTEAQVSAVGDILADMKSPERMLRLLQ 299 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG+GKT+VAL+AMA A EAG Q+V++AP ILA+QH + K I +EI+TG Sbjct: 300 GDVGAGKTVVALMAMARAAEAGVQSVLLAPTEILARQHASGLSKLCDAAGITLEILTGRD 359 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R L RI G I++GTHALFQ+ + Y+ L LV+VDEQHRFGV QRL+L+ K Sbjct: 360 TGKARDAKLGRIESGDTQIVVGTHALFQEGVDYHDLGLVVVDEQHRFGVHQRLQLSAKGK 419 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 P +L+MTATPIPRTLVL + GD+D+S++ KPAGRKPI TV +P R+ ++++R+ + Sbjct: 420 RPDLLVMTATPIPRTLVLAAFGDMDVSRLVGKPAGRKPIATVALPEERLLDIVKRIGSAV 479 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 G + YW+CP +EE ++S+ + ER L + F + ++HGRM +K++ M +F+ Sbjct: 480 EGGDRVYWVCPLVEESEKSDLTAAEERAEVLRKFFGDQVGLVHGRMKGEEKDAAMAAFQA 539 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 GT ++++ATTVIEVG+DV DASII+IE+AE FGL+QLHQLRGRVGRG + SSC+LLY PP Sbjct: 540 GTTRIIVATTVIEVGVDVPDASIIVIEHAERFGLSQLHQLRGRVGRGNKASSCVLLYRPP 599 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 L + + RL++++ TEDGF IAEEDLK R EG++LG +QSGMP F +A+ E H L+E+A Sbjct: 600 LGETASARLNIMRETEDGFRIAEEDLKLRGEGDLLGTQQSGMPFFRLARLEHHADLMEVA 659 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 R DA+ IL DP+L S RG+++R LLYL+ +EA + +R+G Sbjct: 660 RDDARLILATDPELKSARGEALRTLLYLFGKDEAVRLLRSG 700 >gi|254469973|ref|ZP_05083378.1| ATP-dependent DNA helicase RecG [Pseudovibrio sp. JE062] gi|211961808|gb|EEA97003.1| ATP-dependent DNA helicase RecG [Pseudovibrio sp. JE062] Length = 700 Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/700 (46%), Positives = 459/700 (65%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP+ L+PLFA ++ G+G K + ++ ++ E R DLLF+ P + IDR RP Sbjct: 1 MRPTRLDPLFASVTKLPGIGPKIAKTITNLLVGSPDREARISDLLFHVPVNVIDRRLRPG 60 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 ++ E IVT+ I QH + R PYK+L +D TG I L+FF+ + + L+ V G Sbjct: 61 VAASPEGEIVTLVLQIDQHRAPPRGSRAPYKVLAHDETGAIELVFFHARGDYLQRVLPVG 120 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 K ++GK++ R MVHP ++ + N PL+E VY + GL+ ++ + AL Sbjct: 121 EKRIISGKVEWFNERAQMVHPDHMVSEEEAENLPLVEPVYPMTAGLASKTLQRAMGTALQ 180 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 LP +PEW K+ +++++FP A IH P A+D AR RLAYDE LA Q+AL Sbjct: 181 FLPQMPEWQNKEFVEQRNFPPFDVALRSIHKPEDARDLAPEGLARARLAYDEFLANQLAL 240 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L+R + G +G + +KIL +PF T QE A+K+I D+ + RMLR+LQG Sbjct: 241 ALVRNSLRHMGGKARKGDGSLRRKILAALPFELTDGQEDALKEIFADLEEPTRMLRLLQG 300 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+V L+AMAA +E GGQA +MAP ILA+QH+ +K I +++G Sbjct: 301 DVGSGKTVVGLMAMAAVIETGGQAAMMAPTDILARQHFASMKPLCDAAGIRAAVLSGKDT 360 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 +R+ E + G+ +I+GTHALFQ ++ + L + IVDEQHRFGV QRL L+ K Sbjct: 361 AKTKREIGEALEAGEIDLIVGTHALFQSTVNFKDLGITIVDEQHRFGVHQRLALSSKGAH 420 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 VL+MTATPIPRTLVL+ GD+D+S++T+KP GR+ IKTV I ++RI EV+ERL+ +++ Sbjct: 421 VDVLVMTATPIPRTLVLSYFGDMDVSRLTDKPKGRQEIKTVSISLDRIGEVVERLRAMIA 480 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540 +G+K YW+CP +EE ++ + + ERFN L +A++HGR +K++ MD+FKNG Sbjct: 481 QGQKIYWVCPLVEESEKIDLAAAEERFNDLQNALGPVVALVHGRQKADEKQAAMDAFKNG 540 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L+ATTVIEVG+DV DA+II+IE+AE FGLAQLHQLRGRVGRG SSC+LL+ PL Sbjct: 541 DARVLVATTVIEVGVDVPDATIIVIEHAERFGLAQLHQLRGRVGRGSLASSCLLLFKAPL 600 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 ++ + +RL++L+ T DGFLIAEEDL+ R EGE+LG +QSG P F +A E H L+EIAR Sbjct: 601 NETAASRLNILRQTNDGFLIAEEDLRLRGEGELLGTRQSGSPGFRLASIEDHADLMEIAR 660 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DAK I+ DP+L + RG ++R LLYL+ +EA + +RAG Sbjct: 661 DDAKLIMATDPELETERGDALRHLLYLFARDEAIKLLRAG 700 >gi|118589912|ref|ZP_01547316.1| ATP-dependent DNA helicase [Stappia aggregata IAM 12614] gi|118437409|gb|EAV44046.1| ATP-dependent DNA helicase [Stappia aggregata IAM 12614] Length = 700 Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/700 (45%), Positives = 457/700 (65%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP L+PLFAP+ST G+G K +S ++ + DLLF+ P S IDR +RP Sbjct: 1 MRPPVLDPLFAPVSTLPGIGPKIEKLVSGLVGSQPDRDATVADLLFHIPHSLIDRRHRPG 60 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 I+ IVT+ I +H + + PY+I D TG+IT +FF+ + + L+ F EG Sbjct: 61 IAYSENGDIVTLDVTIGRHMAPPRHSKAPYRINAFDETGQITFVFFHPRRDWLEKTFPEG 120 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 + V+GK++ R MVHP Y + P IE VY L GL+ +K + A+ Sbjct: 121 ERRIVSGKVEWFNERPQMVHPDYSLKPEEAEEMPAIEPVYPLTAGLASKTLQKAVRAAVD 180 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 R+PVLPEW+ + L + +P EA +H P + D E SP +RLAYDELLA Q+AL Sbjct: 181 RIPVLPEWLNEAHLHQTGWPDFGEALKTLHAPHERSDLEPASPYMQRLAYDELLASQLAL 240 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 ++R + GI +G + + ++ +PF T SQ AI++I +D+++ RMLR+LQG Sbjct: 241 AMVRAHMRTLGGIARKPKGDLQKAVIAALPFQLTGSQAKAIEEINEDLAKPVRMLRLLQG 300 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVG+GKT+VAL A+A +E G Q +MAP ILA+QHY + Q I + ++TG Sbjct: 301 DVGAGKTVVALAALAQVIETGAQGALMAPTEILARQHYASMLPLCQKAGIRLALMTGKDS 360 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 Q RR E++ G+ +++GTHALFQ S+ + L +V+VDEQHRFGV QRL L+ K Sbjct: 361 QKERRIRQEQLDAGEIDLVVGTHALFQGSVTFRNLAMVVVDEQHRFGVHQRLALSAKGNG 420 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 VL+MTATPIPRTLVLT GD+D+S++T+KPAGRKPI TV + ++R+DE+I R+ ++ Sbjct: 421 VDVLVMTATPIPRTLVLTGFGDMDVSRLTDKPAGRKPITTVSVSLDRLDEIIGRVGAAVA 480 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540 +G+K YW+CP +EE ++ + +V +R L ++++HGRM+ +K++ M FK+G Sbjct: 481 DGQKVYWVCPLVEESEKIDLAAVEKRHRVLEHALRQRVSLVHGRMNADEKDAAMADFKSG 540 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 K+L+ATTVIEVG+DV DA+II+IE+AE FGLAQLHQLRGRVGRG++ SSC+LLY PL Sbjct: 541 VTKVLVATTVIEVGVDVPDATIIVIEHAERFGLAQLHQLRGRVGRGDKPSSCVLLYKGPL 600 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + + RL++++ T DGFLIAEEDLK R GEILG +QSG P F IA+ + H L+E+AR Sbjct: 601 GETAGARLNIMRQTNDGFLIAEEDLKLRGGGEILGTRQSGTPGFRIARADEHADLMEVAR 660 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ IL DPDL + RG+++R LLYL+ + A + +RAG Sbjct: 661 DDARLILELDPDLKTKRGEALRCLLYLFGRDAAIRLLRAG 700 >gi|319898844|ref|YP_004158937.1| ATP-dependent DNA helicase [Bartonella clarridgeiae 73] gi|319402808|emb|CBI76359.1| ATP-dependent DNA helicase [Bartonella clarridgeiae 73] Length = 701 Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/701 (48%), Positives = 455/701 (64%), Gaps = 1/701 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59 MRPS LNPLF +ST GV K L+K++N E IDLL P S IDR RP Sbjct: 1 MRPSLLNPLFTSISTLAGVNIKICSLLAKVLNINFTQREPTLIDLLRLMPHSVIDRRKRP 60 Query: 60 KISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I+ E IVT+ I QH+ R PY+++ +D TG I L+FF+ + L+ E Sbjct: 61 GIAFAQEGGIVTLEITIDQHTPPTNYSRSPYRVIGHDQTGTINLIFFHAQRPWLEKQLPE 120 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G+K+ V+GK+++ K ++ M+HP +I + Q P IE +Y GLS ++ + +AL Sbjct: 121 GKKVIVSGKVERFKGQLSMIHPDHIAFHEQLDQIPFIEPIYPSTAGLSTKTIRRAMQKAL 180 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 +P LPEWIE+ + ++ +F S A IH P D S AR+RLAYDE A QIA Sbjct: 181 ECIPPLPEWIEESVKKEHNFSSFPVALRRIHAPINPDDLSLESTARKRLAYDEFFASQIA 240 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L+R + K GI G +K+L +PF T Q AIKDI D++ MLR+LQ Sbjct: 241 LGLVRLETKSLSGISRPSTGAYTKKLLEVLPFQLTNGQIKAIKDIESDLASPEPMLRLLQ 300 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG+GKT+VAL+A+A E GQ+ +M P +LA+QH+ I + + ++TG Sbjct: 301 GDVGTGKTVVALMAIAQIAENAGQSALMVPTEVLARQHFATITPLVEKIGLKTALLTGRE 360 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R L+ I G+ IIIGTHAL Q+++ Y L L I+DEQHRFGV QRL LT K Sbjct: 361 KGKVRANILDAILSGETSIIIGTHALIQENVTYNNLALAIIDEQHRFGVHQRLTLTAKGN 420 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 P +L+MTATPIPRTLVLTS GD+D+SKIT+KP GR+PI T IP RI+E+IER+ L Sbjct: 421 KPDMLVMTATPIPRTLVLTSYGDMDVSKITDKPIGRQPITTATIPSERINELIERIATAL 480 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 + +K YWICP +EE S+ RF SL + F + + +IHG+MS +KE+V+ SFKN Sbjct: 481 QKEEKIYWICPLVEESTTLELTSIENRFASLQKRFGAHVGMIHGKMSTDEKEAVITSFKN 540 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 +L+ATTVIEVGID+ DASII+IE+AEHFGLAQLHQLRGRVGRG + SSCILLY P Sbjct: 541 ANICILVATTVIEVGIDIPDASIIVIEHAEHFGLAQLHQLRGRVGRGNKKSSCILLYKSP 600 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 L+K + RL++++NTEDGF IAEEDL+ R EGE+LG +QSGMP+F IA +H LL IA Sbjct: 601 LTKTAEARLNIMRNTEDGFKIAEEDLRLRGEGELLGTRQSGMPEFYIANLAVHSDLLLIA 660 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 +++A L +DP+L+S +GQ++R+LLYL+ ++A Q IRAG Sbjct: 661 KRNAHLFLKRDPNLSSEQGQAVRLLLYLFGRDDALQLIRAG 701 >gi|163868513|ref|YP_001609722.1| ATP-dependent DNA helicase RecG [Bartonella tribocorum CIP 105476] gi|161018169|emb|CAK01727.1| ATP-dependent DNA helicase [Bartonella tribocorum CIP 105476] Length = 702 Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/702 (47%), Positives = 461/702 (65%), Gaps = 2/702 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59 M PS L PLF + T G+ K L+K++N E IDLL P S IDR RP Sbjct: 1 MPPSLLTPLFNSIRTLSGITPKVYGLLTKLLNVNPTQREATLIDLLQLMPHSVIDRRMRP 60 Query: 60 KISEISEERIVTITGYISQHSSF-QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118 I E VT+ I QH + + PY+++ ++ TG+I L+FF+ + LK Sbjct: 61 SIDCAKEGETVTLEIVIDQHQPPPRGHNKIPYRVIAHNQTGKINLVFFHAQPLWLKKQLP 120 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 EG+K+ V+GK++ + M HP +I + Q PLIE VY GL+ ++ I A Sbjct: 121 EGKKVIVSGKVEWFNGLLSMAHPDHIAPSEQSNQIPLIEPVYPSTAGLAAKTLRRAIQHA 180 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L +P+LPEWI++++ ++++F S + A IH P D S AR+RLAYDELLA Q+ Sbjct: 181 LDFIPLLPEWIDENVKKQQNFSSFSVALRRIHAPINPGDLSLESTARKRLAYDELLACQL 240 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 AL L+R + K +G G +K+L +PF T Q A++DI D++ MLR+L Sbjct: 241 ALGLVRLKTKSLVGASRPSTGIYTKKLLNVLPFQLTTGQIKAVEDIANDLASPEPMLRLL 300 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVG+GKT+VAL+AMA E GQ+ +MAP +LA+QH+ I + + ++TG Sbjct: 301 QGDVGAGKTVVALMAMAQIAENSGQSALMAPTEVLARQHFATIAPLAEKIGLQTTLLTGR 360 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R L I GQ I+IGTHAL QDS+ Y L L I+DEQHRFGV QR+ LT+K Sbjct: 361 EKGKLRTNILNDILSGQVSIVIGTHALIQDSVTYNNLALTIIDEQHRFGVHQRIALTEKG 420 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 P +L+MTATPIPRTLVLT+ GD+D+SKITEKP GR+PI T ++ + RI E+IER+ + Sbjct: 421 DKPDMLVMTATPIPRTLVLTAFGDMDVSKITEKPIGRQPITTAMLSLKRIHELIERIAIA 480 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 L +G+K YWICP +EE K + S+ RF LHE F + + +IHG+MS +KE+ M SFK Sbjct: 481 LDKGEKLYWICPLVEESKALDLTSIENRFAFLHERFGTHVGMIHGKMSTAEKETAMASFK 540 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G ++L+ATTVIEVG+D+ DASIIIIE+AEHFGL+QLHQLRGRVGRG++ SSCILLY Sbjct: 541 CGNTRILVATTVIEVGVDIPDASIIIIEHAEHFGLSQLHQLRGRVGRGDKKSSCILLYKE 600 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PL+K + TRL++++NTEDGF IAEED + R EGE+LG KQSG+P+F IA +H LL I Sbjct: 601 PLTKTAATRLNIIRNTEDGFEIAEEDWRLRGEGELLGTKQSGVPEFHIANLAVHSDLLSI 660 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 ARKDA+ L +DP L+S +GQ++R+LLYL+++++A + +RAG Sbjct: 661 ARKDARLFLQRDPYLSSEQGQALRLLLYLFRHDDAARLLRAG 702 >gi|319407173|emb|CBI80812.1| ATP-dependent DNA helicase [Bartonella sp. 1-1C] Length = 701 Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/701 (47%), Positives = 453/701 (64%), Gaps = 1/701 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59 MRPS LNPLF P++T GV K +K++N E IDLL P S IDR +P Sbjct: 1 MRPSLLNPLFTPINTLAGVNTKICSLFAKVLNINLGQREPTLIDLLRLMPHSVIDRRKQP 60 Query: 60 KISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I E IVT+ I QH R PY+++ D TG I L+FF+ + L+ + Sbjct: 61 NIFSAQEGDIVTLEIIIDQHIPPTNHSRAPYRVIGYDQTGIINLIFFHAQRSWLEKQLPK 120 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G+K+ V+GK+++ K ++ M+HP +I Q P IE +Y GLS ++ +AL Sbjct: 121 GKKVVVSGKVERFKGQLSMIHPDHILFYEQLDQMPFIEPIYPSTAGLSTKTLRRATKKAL 180 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 +P LPEWIE+ + ++ +F S A + IH+P D S AR+RLAYDE A QIA Sbjct: 181 DSIPSLPEWIEESIKKEHNFSSFAVSLRRIHDPINPDDLTLESTARKRLAYDEFFANQIA 240 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L+R + K G G +K+L +PF T Q AIKDI D++ MLR+LQ Sbjct: 241 LGLVRLETKSLSGTSRPPTGTYTKKLLEILPFQLTNGQIKAIKDIENDLASPEPMLRLLQ 300 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG+GKT+VAL+A+A E GQ+ +M P +LA+QH+ I + + ++TG Sbjct: 301 GDVGTGKTVVALMAIAQIAENSGQSALMVPTEVLARQHFATITPLAEKIGLQTALLTGRE 360 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R + L+ I G+A IIIGTHAL Q+ + Y L L I+DEQHRFGVQQRL LT K Sbjct: 361 KGKVRARILDTILSGEASIIIGTHALIQEHVTYNNLALAIIDEQHRFGVQQRLTLTAKGN 420 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 P +L+MTATPIPRTL+LTS GD+D SKIT+KP GR PI T IP RI+E+IER+ + Sbjct: 421 KPDMLVMTATPIPRTLILTSYGDMDASKITDKPIGRHPITTATIPSERINELIERIATAV 480 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 + +K YWICP +EE K S+ RF SL + F + + +IHG+MS +KE+VM SFK Sbjct: 481 QKEEKIYWICPLVEESKTLQLTSIESRFTSLQKRFGTRVGMIHGKMSTDEKETVMTSFKK 540 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 +L+ATTVIEVG+D+ DASII+IE+AEHFGLAQLHQLRGRVGRG + SSCILLY P Sbjct: 541 ANICILVATTVIEVGVDIPDASIIVIEHAEHFGLAQLHQLRGRVGRGNKKSSCILLYKGP 600 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 L+K + RL++++NTEDGF IAEEDL+ R EGE+LG +QSGMP+F IA +H +LL IA Sbjct: 601 LTKTAEARLNIMRNTEDGFTIAEEDLRLRGEGELLGTRQSGMPEFYIANLAVHRNLLLIA 660 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 +K+A +L +DP+L+S +GQ++R+LLYL+ ++A Q +RAG Sbjct: 661 KKNAHLLLQRDPNLSSEQGQAVRLLLYLFGRDDALQLLRAG 701 >gi|121602903|ref|YP_989053.1| ATP-dependent DNA helicase RecG [Bartonella bacilliformis KC583] gi|120615080|gb|ABM45681.1| ATP-dependent DNA helicase RecG [Bartonella bacilliformis KC583] Length = 702 Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/699 (46%), Positives = 465/699 (66%), Gaps = 2/699 (0%) Query: 4 SFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNAN-ETRFIDLLFYHPSSFIDRHYRPKIS 62 + +NPL + + T G+ K L+K++N A E + IDLL P S IDR +P I+ Sbjct: 4 NLINPLLSSIRTLPGITPKICALLAKVLNIDLAQREPQLIDLLQLMPHSVIDRRMQPSIA 63 Query: 63 EISEERIVTITGYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 E +IVT+ I QH K PY+++ +D TG+I L+FF+ ++ LK EG+ Sbjct: 64 CAQEGQIVTLKITIDQHQPPPTNLKSLPYRVIGHDETGQINLVFFHARSSWLKTQLPEGK 123 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+GKI++ ++ MVHP +I + + PLIE +Y GLS ++++ AL Sbjct: 124 TVIVSGKIERFNKQLSMVHPDHIAFSEEFNQIPLIEPIYPSTAGLSAKTLRRVVQNALEH 183 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 +P LPEWI++ + ++++F S + A IH+P S AR+RLAYDELLA Q+AL Sbjct: 184 VPFLPEWIDESVKKQQNFSSFSVALRCIHDPIDPCHLSLESTARKRLAYDELLACQLALG 243 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L+R Q K G+ G +K+L+++PF T Q+ IK+I D++ MLR+LQGD Sbjct: 244 LVRLQTKSLTGVSRLSTGTYTEKLLKSLPFQLTNGQKKTIKEIANDLASPEPMLRLLQGD 303 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKT+VAL+A+A E GQ+ +MAP +LA+QH+ I + + ++TG Sbjct: 304 VGTGKTVVALMAIAQIAENLGQSALMAPTEVLARQHFSTIAPLAEKIGLQTTLLTGREKG 363 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 R L I+ G A IIIGTHAL Q+++ Y+ L L I+DEQHRFGV QRL LT K P Sbjct: 364 KTRTNILNDISSGHASIIIGTHALIQENVTYHNLSLAIIDEQHRFGVHQRLALTAKGHKP 423 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 +L+MTATPIPRTLVLT+ GD+D+SKITEKP GR+PI T +P+ RI+E+IER+ L + Sbjct: 424 DMLVMTATPIPRTLVLTTFGDMDVSKITEKPIGRQPITTATLPLERINELIERIASALEK 483 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541 G+K YWICP +EE S+ RF +L+E F + +IHG+MS +K++ M SFK G Sbjct: 484 GEKLYWICPLVEESTTLQLTSIENRFATLYEQFGDCVGMIHGKMSTNEKDAAMASFKCGK 543 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L+ATTVIEVG+D+ DASII+IE+AEHFGL+QLHQLRGRVGRGE+ SSCILLY PL+ Sbjct: 544 TRILVATTVIEVGVDIPDASIIVIEHAEHFGLSQLHQLRGRVGRGEKKSSCILLYKGPLT 603 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 K + RL+++++TEDGF+IAEEDL+ R EGE+LG +QSGMP+F IA +H LL +ARK Sbjct: 604 KTAAARLNIMRSTEDGFIIAEEDLRLRGEGELLGTRQSGMPEFHIANLAVHSDLLSMARK 663 Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ L +D L+S RG+++R+LLYL++ + A Q +RAG Sbjct: 664 DARLFLQRDATLSSERGKALRLLLYLFKRDYAIQLLRAG 702 >gi|110634056|ref|YP_674264.1| ATP-dependent DNA helicase RecG [Mesorhizobium sp. BNC1] gi|110285040|gb|ABG63099.1| ATP-dependent DNA helicase RecG [Chelativorans sp. BNC1] Length = 702 Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/702 (46%), Positives = 478/702 (68%), Gaps = 2/702 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANET-RFIDLLFYHPSSFIDRHYRP 59 MRPS L+PLFAP + G+G + + ++ ++ AN R DLLF P S IDR RP Sbjct: 1 MRPSLLDPLFAPATALEGIGSRTAGLIANVVPADLANRPLRVGDLLFVLPHSLIDRTNRP 60 Query: 60 KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118 +++ + IVT+ + +H K+ PY++ D TG+ITL FF+ L+ F Sbjct: 61 EVAYAPQGAIVTLRLTVDRHQPPPRGKKNVPYRVFAFDETGQITLTFFHAHPAYLEKQFP 120 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 G ++ V+G+++ R MVHP YI S+ + P +E VY L GLS + ++ I +A Sbjct: 121 VGSEVLVSGRMEWFNGRPSMVHPDYIVPASEAASLPPLEPVYPLTAGLSPKVLRRAIAQA 180 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 ++R+P +PEW ++ L + F S A + +H+P+ +D + +RLAYDELLA Q+ Sbjct: 181 VARVPDMPEWQDEALKTQLGFSSFRAALDRLHDPKNVEDISPENAPWQRLAYDELLASQL 240 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 +L L+R + +K G P+N +G +A +I +P+S T SQE A+ DI D+++ RMLR+L Sbjct: 241 SLALVRARTRKLAGRPLNGDGMLAARIKHALPYSLTPSQERAVADIFADLAKDERMLRLL 300 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVG+GKT+VAL+AMA A EAGGQ+ +MAP +LA+QH+ + + + ++TG Sbjct: 301 QGDVGAGKTVVALLAMARAAEAGGQSALMAPTELLARQHFATVAPLAEKAGLKAALLTGR 360 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R++ L RIA G+ +IGTHALFQ+++Q++ L+L I+DEQHRFGV QRL + K Sbjct: 361 EKGRERQEILARIASGEVSFVIGTHALFQETVQFHDLVLTIIDEQHRFGVHQRLAINAKG 420 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 AP +L+MTATPIPRTLVL++ GD+D+S++TEKPAGRKPI+TV +P +R+DE+IERL+ Sbjct: 421 DAPDMLVMTATPIPRTLVLSAFGDMDVSRLTEKPAGRKPIRTVTMPTDRLDELIERLQNA 480 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 + EG+K YWICP +EE S +RF SL F ++ ++HGRM+ +K+ M +FK Sbjct: 481 IVEGQKIYWICPLVEESDAIELTSAEDRFASLKHVFGHAVGLVHGRMAAREKDEAMRAFK 540 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 +G ++L+ TTV+EVG+DV DA+II+IE+AE FGLAQLHQLRGRVGR ++ SSC+LLY P Sbjct: 541 DGQTRILVGTTVVEVGVDVPDATIIVIEHAERFGLAQLHQLRGRVGRSDKPSSCVLLYKP 600 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PL + + RL++L+ TEDGFLI+EEDLK R EG++LG +QSG P F +A+ E H LL Sbjct: 601 PLGEVAKRRLAILRETEDGFLISEEDLKLRGEGDLLGTRQSGTPGFQVARLEFHAELLAT 660 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 AR DA+ +L++DP+L S RG+++R+LLYL+ +EA + +RAG Sbjct: 661 ARDDARLLLSRDPELASERGRALRVLLYLFGKDEAVRLLRAG 702 >gi|319404154|emb|CBI77747.1| ATP-dependent DNA helicase [Bartonella rochalimae ATCC BAA-1498] Length = 701 Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/701 (47%), Positives = 451/701 (64%), Gaps = 1/701 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNAN-ETRFIDLLFYHPSSFIDRHYRP 59 M PS LNPLF ++T GV K +K++N E IDLL P S IDR +P Sbjct: 1 MHPSLLNPLFTSINTLAGVNTKICSLFAKVLNINLVQREPTLIDLLRLMPHSVIDRRKQP 60 Query: 60 KISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 IS E IVT+ I QH R PY+++ D TG I L+FF+ + L+ + Sbjct: 61 NISFAQEGDIVTLEIIIDQHIPPTNHSRAPYRVIGYDRTGTINLIFFHAQRSWLEKQLPK 120 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G+K+ V+GK+++ K ++ M+HP +I Q P IE +Y GLS ++ +AL Sbjct: 121 GKKVIVSGKVERFKGQLSMIHPDHILFYEQLDQMPFIEPIYPSTAGLSTKTLRRATKKAL 180 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 +P LPEWIE+ + ++ +F S A + IH+P D S AR+RLAYDE A QIA Sbjct: 181 DFIPSLPEWIEESIKKEHNFSSFAVSLRRIHDPINPDDLTLESTARKRLAYDEFFANQIA 240 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L+R + K G G +K+L +PF T Q AIKDI D++ MLR+LQ Sbjct: 241 LGLVRLETKSLSGTSRPPTGAYTKKLLEILPFQLTNGQIKAIKDIENDLASPEPMLRLLQ 300 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG+GKT+VAL+A+A E GQ+ +M P +LA+QH+ I + + ++TG Sbjct: 301 GDVGTGKTVVALMAIAQIAENSGQSALMVPTEVLARQHFATIAPLAEKIGLQTALLTGRE 360 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R K L+ I G+A IIIGTHAL Q+ + Y L L I+DEQHRFGV QRL LT K Sbjct: 361 KGKVRAKILDTILSGEASIIIGTHALIQEHVTYNNLALAIIDEQHRFGVHQRLTLTAKGN 420 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 P +L+MTATPIPRTL+LTS GD+D SKIT+KP GR PI T IP RI+E+IER+ + Sbjct: 421 KPDMLVMTATPIPRTLILTSYGDMDASKITDKPIGRNPITTATIPSERINELIERIATAV 480 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 + +K YWICP +EE K S+ RF SL + F + + +IHG+MS +KE+VM SFKN Sbjct: 481 QKEEKIYWICPLVEESKTLQLTSIENRFASLQKRFGTRVGMIHGKMSTDEKETVMASFKN 540 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 +L+ATTVIEVG+D+ DASII+IE+AEHFGLAQLHQLRGRVGRG + SSCILLY P Sbjct: 541 ANICILVATTVIEVGVDIPDASIIVIEHAEHFGLAQLHQLRGRVGRGNKKSSCILLYKGP 600 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 L+K + RL++++NTEDGF IAEEDL+ R EGE+LG +QSGMP+F IA +H +LL IA Sbjct: 601 LTKTAEARLNIMRNTEDGFTIAEEDLRLRGEGELLGTRQSGMPEFYIANLAVHRNLLLIA 660 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 +K+A +L +DP+L+S +G ++R+LLYL+ ++A Q +RAG Sbjct: 661 KKNANLLLQRDPNLSSEQGYAVRLLLYLFGRDDALQLLRAG 701 >gi|319408652|emb|CBI82307.1| ATP-dependent DNA helicase [Bartonella schoenbuchensis R1] Length = 702 Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/702 (48%), Positives = 462/702 (65%), Gaps = 2/702 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59 M + N + T GV +K L+K++N + +E IDLL P S IDR RP Sbjct: 1 MYSNLFNLFSTSIRTLPGVNQKVYPLLAKVLNTNLSQHEPTIIDLLQLMPHSVIDRRMRP 60 Query: 60 KISEISEERIVTITGYISQH-SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118 I+ E +IVT+ I QH R PY+++ D TG I L+FF+ + L+ Sbjct: 61 DIAFAPEGKIVTLEIIIDQHRPPLNSNNRSPYRVIGYDKTGSINLVFFHAQRSWLERQLP 120 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 EG+K+ V+GK+++ ++ +VHP +I + Q PLIE +Y GLS K+ + A Sbjct: 121 EGKKVIVSGKVERFNGQLSIVHPDHIAPSEQLNQMPLIEPIYPSTAGLSARALKRAMQGA 180 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L R+P+LPEWIEK+L +++ FPS ++A + IH P D S AR+RLAYDELLAGQ+ Sbjct: 181 LERIPLLPEWIEKNLKKQQQFPSFSDALHCIHAPIDPNDLALKSAARQRLAYDELLAGQL 240 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 AL L+R + K G G +K+L ++PF T +Q+ AI+DI D++ MLR+L Sbjct: 241 ALGLVRLKTKSLSGASRPPTGVYTEKLLESLPFQLTNAQKQAIQDIASDLASPEPMLRLL 300 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVG+GKT+VAL+AMA E GQ+ +MAP +LA+QH+ I + + ++TG Sbjct: 301 QGDVGTGKTVVALMAMAQIAENSGQSALMAPTEVLARQHFTMIAPLAEKIGLKTVLLTGR 360 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R L I G+ IIIGTHAL Q ++ Y L L I+DEQHRFGV QRL LT K Sbjct: 361 EKGKSRVNILNDILSGKISIIIGTHALIQKNVTYNNLALTIIDEQHRFGVNQRLALTAKG 420 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 P +L+MTATPIPRTLVLT+ GD+D+SKITEKP GRKPI T +P+ RIDE+IER+ V Sbjct: 421 HKPDILVMTATPIPRTLVLTAFGDMDVSKITEKPIGRKPITTATLPLERIDELIERIAVA 480 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 L +G+K YWICP +EE + S+ RF LH+ F + + +IHG+MS K + + SFK Sbjct: 481 LEKGEKLYWICPLVEESENFQLTSIENRFAILHKRFGACVGMIHGKMSTTKKNAAIASFK 540 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 +G +L+ATTVIEVG+D+ DASIIIIE+AEHFGL+QLHQLRGRVGRGE+ SSCILLY Sbjct: 541 SGETCILVATTVIEVGVDIPDASIIIIEHAEHFGLSQLHQLRGRVGRGEKKSSCILLYKA 600 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PL+K + RL++++NTEDGF IAEEDL+ R EGE+LG +QSGMP+F IA H LL + Sbjct: 601 PLTKTAAMRLNIIRNTEDGFKIAEEDLRLRGEGELLGTRQSGMPEFHIANLTAHHKLLLM 660 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 ARKDA L D DL+S RGQ++R+LLYL+++++A Q +R+G Sbjct: 661 ARKDACLFLQHDSDLSSERGQALRLLLYLFRHDDAIQLLRSG 702 >gi|90419665|ref|ZP_01227575.1| ATP-dependent DNA helicase RecG [Aurantimonas manganoxydans SI85-9A1] gi|90336602|gb|EAS50343.1| ATP-dependent DNA helicase RecG [Aurantimonas manganoxydans SI85-9A1] Length = 700 Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/701 (47%), Positives = 465/701 (66%), Gaps = 2/701 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRPS L+PLFA ++T GVG K + L ++ N E R DLLF+ PS IDR R + Sbjct: 1 MRPSILDPLFAAVTTLEGVGPKVAAQLQTLL-VANGAEVRVRDLLFHLPSGLIDRRKRAE 59 Query: 61 ISEISEERIVTITGYISQHSS-FQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I+ E IVT+T I +H + + QK PY++ D TGEI L +F ++ L+ + Sbjct: 60 IATAPEGGIVTLTVRIDRHQAPGRGQKSVPYRVFAQDETGEIALTYFRGQSAWLEKLLPV 119 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G + V+G+++ R MVHP ++ + L+E VY + GLS L +K I E L Sbjct: 120 GETMIVSGRVEWFNGRPSMVHPDFVATLEEAETLSLVEPVYPMTAGLSPKLLRKAIAETL 179 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 +LP L EWI+ ++ ++++P I A +H+P D PA RLAYDE LA Q+A Sbjct: 180 EKLPALDEWIDPAVVAREAYPGIGSALRRLHDPEDETDIAHAGPAWSRLAYDEYLASQLA 239 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L R++ KK G P+ G++A + +PF+ T+ QE+AI +I DM+ +RMLR+LQ Sbjct: 240 LALSRQRMKKARGRPLVGTGRMAGLLRAALPFTLTEGQEAAIAEIHTDMAAPDRMLRLLQ 299 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT+VAL+AMAAA EAG Q+ ++AP ILA+QH++ + K + + + ++TG Sbjct: 300 GDVGSGKTVVALMAMAAAAEAGAQSALLAPTEILARQHHDGLSKLCEAAGLSIVLLTGRD 359 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R L IA G+ I++GTHALFQ+ + Y L LV+VDEQHRFGV QRL LT K Sbjct: 360 TGRARAAKLAAIAAGEVQIVVGTHALFQEGVDYADLGLVVVDEQHRFGVHQRLSLTAKGR 419 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L+MTATPIPRTLVL + GD+D+S+++ KPAGRKPI TV +P+ R+ +++ R + Sbjct: 420 GADLLVMTATPIPRTLVLAAFGDMDVSRLSGKPAGRKPITTVAVPMERLSDIVGRAGSAM 479 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 G++ YW+CP +EE ++S+ + ERF L HF I ++HGRMS +K++ M FK Sbjct: 480 DAGERLYWVCPLVEESEKSDLMAAEERFRQLQAHFGDRIGLVHGRMSGEEKDAAMADFKA 539 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G +L++ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG + SSC+LLY P Sbjct: 540 GRTQLVVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGSKASSCVLLYRAP 599 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 L + + R+ V++ TEDGF IAEEDLK R EG++LG +QSGMP F IA E H L+E+A Sbjct: 600 LGETASARIKVMRETEDGFRIAEEDLKLRGEGDLLGTQQSGMPYFRIASMEHHARLMEVA 659 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 R DA+ ILT+DP+LTS RG+++R LLYL+ +EA + +R+G Sbjct: 660 RDDARMILTRDPELTSPRGEALRALLYLFGKDEAIRLLRSG 700 >gi|254504403|ref|ZP_05116554.1| ATP-dependent DNA helicase RecG [Labrenzia alexandrii DFL-11] gi|222440474|gb|EEE47153.1| ATP-dependent DNA helicase RecG [Labrenzia alexandrii DFL-11] Length = 730 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/700 (45%), Positives = 456/700 (65%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP L+PLFAP+ST G+G K + ++ ++ E DLLF+ P S IDR ++P Sbjct: 31 MRPPVLDPLFAPVSTLPGIGPKIAKLVAGLVGGQPDREATVADLLFHIPHSLIDRRHKPG 90 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 I+ IVT+ I +HS+ + PY+I D TG+IT +FF+ + + L+ F EG Sbjct: 91 IAYSENGDIVTLDVTIGRHSAPPRHSKAPYRISAYDETGQITFVFFHSRQDWLQKTFPEG 150 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 + V+GK++ +R MVHP Y + P IE +Y L GL+ +K + A Sbjct: 151 ERRIVSGKVEWFNDRPQMVHPDYSVSPEEADQMPPIEPIYPLTAGLASKTLQKAMKAACE 210 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 ++P LPEW+ + L + +P AEA +H P+ +D E SP +R+AYDELLA Q+AL Sbjct: 211 KIPHLPEWLNEPYLHQTGWPDFAEALKTLHAPKGRQDVEPQSPFMQRVAYDELLASQLAL 270 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L+R + GI +GK+ ++ +PF T SQ+ AIKDI D+++ RMLR+LQG Sbjct: 271 ALVRANMRTLGGIERKPDGKLQAAVINALPFELTDSQKDAIKDINADLAKPTRMLRLLQG 330 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVG+GKT+VAL +A ++ G Q +MAP ILA+QHY + + I + ++TG Sbjct: 331 DVGAGKTVVALATLAQVIQTGAQGGLMAPTEILARQHYASMAPICEQAGIRMALMTGKDT 390 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 Q RR E++ G+ +++GTHALFQ S+ + L +V+VDEQHRFGV QRL L+ K Sbjct: 391 QKERRLLQEKLDAGEIDLVVGTHALFQGSVTFKDLGMVVVDEQHRFGVHQRLALSSKGRG 450 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 VL+MTATPIPRTLVLT GD+D+SK+ KPAGRKPIKTV + ++R++E+I R+ Sbjct: 451 VDVLVMTATPIPRTLVLTCFGDMDVSKLLGKPAGRKPIKTVSVSLDRLEEIIGRVGAATR 510 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540 EG+K YW+CP +EE ++ + +V +R L ++++HGRMS +K++ MD FK+G Sbjct: 511 EGQKVYWVCPLVEESEKIDLAAVEDRHRVLEHALGERVSLVHGRMSAAEKDAAMDDFKSG 570 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L+ATTVIEVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG++ SSC+LLY PL Sbjct: 571 RTRVLVATTVIEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDKPSSCVLLYKGPL 630 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + + RL++++ T DGFLIAEEDL+ R GEILG +QSG P F IA+ + H L+E+AR Sbjct: 631 GETAGARLNIMRETNDGFLIAEEDLRLRGGGEILGTRQSGTPGFRIARADEHADLMEVAR 690 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ IL DPDL S RG ++R LLYL+ + A Q +RAG Sbjct: 691 DDARLILETDPDLKSKRGAALRCLLYLFGRDAAIQLLRAG 730 >gi|163793170|ref|ZP_02187146.1| RecG-like helicase [alpha proteobacterium BAL199] gi|159181816|gb|EDP66328.1| RecG-like helicase [alpha proteobacterium BAL199] Length = 693 Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust. Identities = 300/699 (42%), Positives = 459/699 (65%), Gaps = 7/699 (1%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP L PLFA + +GVG +Y+ + K A + +DLL++ PS +DR P Sbjct: 1 MRPELLFPLFAEVGRIKGVGPRYAKLIEK------AAGPQIVDLLWHLPSGVVDRRPSPP 54 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 I E + R+ T+T + +H +R PY+++ +DG +I L++F+ K + L+ + G Sbjct: 55 IPEAPDGRVATLTLTVLRHQPPP-GRRGPYRVVCSDGHADIDLVYFHAKGDWLEKLLPVG 113 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 V+G++++ + R M HP ++ + ++E Y GL + ++ + AL Sbjct: 114 EVRVVSGRLERFQGRAQMAHPEHVVPEEEAEEIRIVEPTYPSTEGLPMRTLRRAVEGALE 173 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 R+P L EW+ LL ++++P EA H P A+D E +P R RLAYDE+L+ Q+AL Sbjct: 174 RIPTLDEWMSPSLLAQRAWPRWDEAVRRAHAPEDARDLEPDAPTRIRLAYDEILSNQLAL 233 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L+R + K++ G ++ +G + + + + +PFS T +Q A+ +I DM+ RMLR+LQG Sbjct: 234 ALVRARMKRQKGRSVHGDGSLREAVAKALPFSLTGAQRMALAEIEADMAADTRMLRLLQG 293 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKTLVAL+AM AVE G QA +MAP ILA+QH+ I+ + + +EI+TG Sbjct: 294 DVGSGKTLVALMAMLNAVECGAQAALMAPTEILARQHFATIEPLARQAGVRIEILTGRDR 353 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 R + RIA G A I++GTHALFQ+ +++ L + I+DEQHRFGV QR+ L K A Sbjct: 354 GKTRAAIVGRIAEGSAKIVVGTHALFQEGVEFRDLAVAIIDEQHRFGVHQRMSLGGKGQA 413 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 L+MTATPIPRTL++T+ GD+D+S++TEKP GR+PI T + ++R+ EV++ + L Sbjct: 414 VDTLVMTATPIPRTLLMTAYGDLDVSRLTEKPPGRQPIDTRTVALDRLGEVVDGVARKLD 473 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540 +G K YW+CP +EE ++ + + ER ++L F + ++HGR+ +K++VMD+FKNG Sbjct: 474 QGAKVYWVCPLVEESEKLDVAAAEERASTLRRRFGDRVGVLHGRLKGPEKDAVMDAFKNG 533 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 T LL+ATTVIEVG+DV +A++++IE+AE FGLAQLHQLRGR+GRG++ S+C+LLY PL Sbjct: 534 TVDLLVATTVIEVGVDVPEATVMVIEHAERFGLAQLHQLRGRIGRGDKASTCLLLYSSPL 593 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 ++ + RL+V+++TEDGFLIAEEDL+ R GE+LG +QSG+P F +A P H SL +AR Sbjct: 594 TETGHARLAVMRDTEDGFLIAEEDLRLRGAGEVLGTRQSGLPTFRMADPAAHASLFPVAR 653 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699 DA+ +L QDP+L RG++ R LLYL++ + A +++R Sbjct: 654 DDARLLLNQDPELEGPRGKAARTLLYLFERDAAVRYLRG 692 >gi|240850745|ref|YP_002972145.1| ATP-dependent DNA helicase RecG [Bartonella grahamii as4aup] gi|240267868|gb|ACS51456.1| ATP-dependent DNA helicase RecG [Bartonella grahamii as4aup] Length = 702 Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/702 (47%), Positives = 462/702 (65%), Gaps = 2/702 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59 M PS L PLF + T G+ K L+K++N E IDLL P S IDR RP Sbjct: 1 MPPSLLTPLFNSIRTLSGITPKVYGLLTKLLNVNPTQREATLIDLLQLMPHSVIDRRMRP 60 Query: 60 KISEISEERIVTITGYISQHSSF-QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118 I+ ++E VT+ I QH + + PY+++ +D TG+I L+FF+ + LK Sbjct: 61 NIACVTEGDTVTLEIIIDQHQPPPRGHNKIPYRVIAHDQTGKINLVFFHAQPLWLKKQLP 120 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 EG+K+TV+GK++ + M HP YI + Q PLIE VY GL+ ++ I A Sbjct: 121 EGKKVTVSGKVEWFNGQFSMAHPDYIAPSEQSNQIPLIEPVYPSTAGLTAKTLRRAIQNA 180 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L +P+LPEWI++++ ++++F S + A IH P D S AR+RLAYDELLA Q+ Sbjct: 181 LDFIPLLPEWIDENVKKQQNFSSFSVALRRIHAPIDPNDLSLESTARKRLAYDELLACQL 240 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 AL L+R + K +G G +K+L +PF T Q+ A++DI D++ MLR+L Sbjct: 241 ALGLVRLKTKSLVGTSRPSTGIYTKKLLNVLPFQLTTGQKKAVEDIANDLASPEPMLRLL 300 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVG+GKT+VAL+AMA E GQ+ +MAP +LA+QH+ I + + ++TG Sbjct: 301 QGDVGAGKTVVALMAMAQIAENSGQSALMAPTEVLARQHFSTIAPLAEKVGLQTTLLTGR 360 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R L I GQ IIIGTHAL Q+SI Y L L I+DEQHRFGV QR+ LT+K Sbjct: 361 EKGKLRINILNDIQSGQVSIIIGTHALIQNSITYNNLALTIIDEQHRFGVHQRIALTEKG 420 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 P +L+MTATPIPRTLVLT+ GD+D+SKITEKP GR+PI T ++ + R+ E+IER+ + Sbjct: 421 NKPDMLVMTATPIPRTLVLTAFGDMDVSKITEKPMGRQPITTAMLSLKRLHELIERIAIA 480 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 L +G+K YWICP +EE + S+ RF LHE F + + +IHG+MS KE+ M SFK Sbjct: 481 LEKGEKLYWICPLVEESTALDLTSIENRFAFLHERFGAHVGMIHGKMSTEKKEAAMASFK 540 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G ++L+ATTVIEVG+D+ DASIIIIE+AEHFGL+QLHQLRGRVGRG + SSCILLY Sbjct: 541 CGNTRILVATTVIEVGVDIPDASIIIIEHAEHFGLSQLHQLRGRVGRGNKKSSCILLYKD 600 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PL+K + TRL++++NTEDGF IAEED + R EGE+LG KQSG+P+F IA +H LL + Sbjct: 601 PLTKTAATRLNIIRNTEDGFEIAEEDWRLRGEGELLGTKQSGVPEFHIANLAVHSDLLSM 660 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 ARKDA+ L +DP L+S +GQ++++LLYL+ +++A + +RAG Sbjct: 661 ARKDARLFLQRDPHLSSQQGQALQLLLYLFGHDDATRLLRAG 702 >gi|49475736|ref|YP_033777.1| ATP-dependent DNA helicase recG [Bartonella henselae str. Houston-1] gi|49238543|emb|CAF27779.1| ATP-dependent DNA helicase recG [Bartonella henselae str. Houston-1] Length = 702 Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/702 (48%), Positives = 458/702 (65%), Gaps = 2/702 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINC-GNANETRFIDLLFYHPSSFIDRHYRP 59 M P + PLF + G+ K L+K++N E IDLL P S IDR RP Sbjct: 1 MLPDLIRPLFTSVRILPGMSPKIYGLLAKVLNINATQREPTIIDLLQLMPYSVIDRRMRP 60 Query: 60 KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118 I+ E VT+ I QH S + + R PY++ +D TG+I L+FF+ + LK Sbjct: 61 NIAFAQEGNTVTLEIIIDQHHSPPIGRNRLPYRVSAHDQTGKINLVFFHAQPPWLKKQLP 120 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 EG+K+ V+GK+++ ++ MVHP +I + Q PLIE +Y GLS ++ I A Sbjct: 121 EGKKVIVSGKVERFNGQLSMVHPDHIAPSKQSNQMPLIEPIYPSTAGLSAKTLRRTIQNA 180 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L +P+LPEWIE+ + ++++F S + A IH P D S AR+RLAYDELLA Q+ Sbjct: 181 LEYIPLLPEWIEESVKKQQNFSSFSVALRRIHAPIDPDDLALESTARKRLAYDELLACQL 240 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 AL LMR + K +G G +K+L+ +PF T Q+ AI+DI D++ MLR+L Sbjct: 241 ALGLMRLKTKSLVGTSRPPTGTYTEKLLKILPFQLTNGQKKAIQDIANDLASPEPMLRLL 300 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVG+GKT+VAL+AMA E GQ+ +M P +LA+QH+ I + + ++TG Sbjct: 301 QGDVGAGKTVVALMAMAQIAENRGQSALMTPTEVLARQHFATIAPLAEKIGLQTVLLTGR 360 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R L I+ QA IIIGTH L Q+++ Y L L I+DEQHRFGV QRL LT K Sbjct: 361 EKGKLRTNILNNISSSQASIIIGTHTLIQNNVTYNNLSLAIIDEQHRFGVNQRLALTAKG 420 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 P +L+MTATPIPRTLVLT+ GD+D+SKITEKP GR+PI T I+ + RIDE+IER+ V Sbjct: 421 HKPDMLVMTATPIPRTLVLTAFGDMDVSKITEKPMGRQPITTAILSLKRIDELIERIAVA 480 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 L +G+K YWICP +EE S+ RF L E F +S+ +IHG+MS KE+ M SFK Sbjct: 481 LEKGEKLYWICPLVEESITLELTSIESRFAMLQERFGTSVGMIHGKMSTDKKEAAMASFK 540 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G +L+ATTVIEVG+D+ DASIIIIE+AEHFGL+QLHQLRGRVGRGE+ SSCILLY Sbjct: 541 CGNIGILVATTVIEVGVDIPDASIIIIEHAEHFGLSQLHQLRGRVGRGEKKSSCILLYKD 600 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PL+K + TRL+++++TEDGF IAEED + R EGE+LG +QSGMP+F IA +H LL + Sbjct: 601 PLTKMAATRLNIIRSTEDGFKIAEEDWRLRGEGELLGTRQSGMPEFHIANLAVHGDLLLL 660 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 AR+DA+ L +DP L+S +GQ++R+LLYL+ ++A + +RAG Sbjct: 661 ARRDARLFLQRDPHLSSEQGQALRLLLYLFGRDDATRLLRAG 702 >gi|169797572|ref|YP_001715365.1| putative ATP-dependent DNA helicase [Acinetobacter baumannii AYE] gi|90265357|emb|CAJ77039.1| ATP-dependent DNA helicase [Acinetobacter baumannii] gi|169150499|emb|CAM88402.1| putative ATP-dependent DNA helicase [Acinetobacter baumannii AYE] Length = 616 Score = 638 bits (1646), Expect = 0.0, Method: Compositional matrix adjust. Identities = 304/578 (52%), Positives = 414/578 (71%) Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182 I V+GK++ R MVHP +I + PLIE VY L GLS + + +AL+R+ Sbjct: 39 IRVSGKLEWFNGRASMVHPDHIAPIDGSDDLPLIEPVYPLTAGLSPKTLARAMRDALTRI 98 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 P LPEW +K L+Q+++FPS +A + +H P + +D SP+R RLAYDE LAGQ+AL L Sbjct: 99 PDLPEWQDKTLMQRENFPSFTQALHHLHLPEEPEDIAQDSPSRRRLAYDEFLAGQMALAL 158 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R + K+ G P+N GKI +IL N+P+S TK QE A+KDI+ D+ Q RMLR+LQGDV Sbjct: 159 VRAKTKRLSGRPLNGTGKITAQILANLPYSLTKGQEQAVKDIIGDLKQPERMLRLLQGDV 218 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 G+GKT+V L++MA A E+GGQ+ +MAP +LA+QH+ I + + ++TG Sbjct: 219 GAGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGREKGK 278 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 R++ L+ +A G HIIIGTHALFQD ++Y+ L+ VI+DEQHRFGV QRL+LT K TAP Sbjct: 279 ERQRILDELADGTIHIIIGTHALFQDKVEYHDLVFVIIDEQHRFGVHQRLQLTAKGTAPD 338 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 +L+MTATPIPRTLVLT+ GD+D+SK+TEKPAGR+PI T I+P R+ E+++R++ +SEG Sbjct: 339 MLVMTATPIPRTLVLTAFGDMDVSKLTEKPAGRQPITTAIVPSERLSEIVDRMRKAISEG 398 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542 +K YWICP +EE + S ERF S F + +IHGRM+ +K+ M +FK G Sbjct: 399 QKIYWICPLVEESEHVELTSAEERFQSFLPVFGDKLGLIHGRMTGQEKDDAMLAFKRGDT 458 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 +LLIATTVIEVG+DV DA++I+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY PL + Sbjct: 459 RLLIATTVIEVGVDVPDATVIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKGPLGE 518 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662 + RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A E H LLEIARKD Sbjct: 519 IAKARLQVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFKLASMEAHTDLLEIARKD 578 Query: 663 AKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 A+ +L +D DL S RGQ++R+LLY++ +EA + +RAG Sbjct: 579 ARLMLERDIDLQSERGQALRLLLYIFGRDEAIRLLRAG 616 >gi|49474349|ref|YP_032391.1| ATP-dependent DNA helicase recG [Bartonella quintana str. Toulouse] gi|49239853|emb|CAF26247.1| ATP-dependent DNA helicase recG [Bartonella quintana str. Toulouse] Length = 702 Score = 635 bits (1638), Expect = e-180, Method: Compositional matrix adjust. Identities = 328/702 (46%), Positives = 456/702 (64%), Gaps = 2/702 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNAN-ETRFIDLLFYHPSSFIDRHYRP 59 M P + PLF + G K L+K++N A E IDLL P S IDR +P Sbjct: 1 MLPDLIRPLFTSVRALPGTSPKICALLAKVLNINPAQREPTVIDLLQLMPQSVIDRRMQP 60 Query: 60 KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118 I+ E VT+ + QH +++ R PY++ +D TG+I L+FF+ + LK Sbjct: 61 SIAFAQEGITVTLEIIVDQHHPPPIERNRLPYRVSAHDQTGKINLVFFHAQRPWLKKQLP 120 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 EG+K+ V+GK+++ ++ M+HP +I + Q PLIE VY GLS ++ I A Sbjct: 121 EGKKVIVSGKVERFNGQLSMIHPDHIAPSEQSNQMPLIEPVYPSTAGLSAKTLRRTIQNA 180 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L +P+LPEWIE+ + ++++F S + A + IH P D S AR+RLAYDELLA Q+ Sbjct: 181 LEYIPLLPEWIEESVKKQQNFSSFSVALHRIHTPINPDDLSLKSAARKRLAYDELLACQL 240 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 AL L+R + K G +G +K+L+ +PF T Q+ AI+DI D++ MLR+L Sbjct: 241 ALGLVRLKTKSLSGASRPPKGTYTKKLLKALPFQLTNGQKKAIQDIANDLASPEPMLRLL 300 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVG+GKT+VAL+A A E GQ+ +MAP +LA+QH+ I + + ++TG Sbjct: 301 QGDVGAGKTVVALMASAQIAENSGQSALMAPTEVLARQHFATIAPLAEKIGLQTVLLTGR 360 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R L+ GQA IIIGTHAL Q+++ Y L L I+DEQHRFGV QRL LT K Sbjct: 361 EKGKLRANILKDTLSGQASIIIGTHALIQNNVAYKNLALTIIDEQHRFGVHQRLALTAKG 420 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 P +L+MTATPIPRTLVLT+ GD+DIS+ITEKP GR+PI T I+P+ RI E++ER+ + Sbjct: 421 NKPDMLVMTATPIPRTLVLTAFGDMDISQITEKPTGRQPITTAILPLQRIHELLERIAIA 480 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 L +G+K YWICP +EE S+ RF L E F + +IHG+MS +KE+ M SFK Sbjct: 481 LEKGEKLYWICPLVEESTTLELTSIENRFAILREQFGERVGVIHGKMSTDEKEAAMTSFK 540 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G +L+ATTVIEVG+D+ DASII+IE+AEHFGL+QLHQLRGRVGRGE+ SSCILLY Sbjct: 541 CGNICILVATTVIEVGVDIPDASIIVIEHAEHFGLSQLHQLRGRVGRGEKKSSCILLYKN 600 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PL+K + RL++++NTEDGF IAEED + R EGE+LG +QSGMP+F IA +H LL I Sbjct: 601 PLTKTAAKRLNIIRNTEDGFKIAEEDWRLRGEGELLGTRQSGMPEFHIANLAVHSDLLSI 660 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 AR+DA+ L D + +S RG+++R+LL L++ ++A + ++AG Sbjct: 661 ARRDARLFLQHDANFSSKRGKALRLLLDLFRRDDAIRLLQAG 702 >gi|319405607|emb|CBI79230.1| ATP-dependent DNA helicase [Bartonella sp. AR 15-3] Length = 701 Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust. Identities = 333/702 (47%), Positives = 453/702 (64%), Gaps = 3/702 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59 M S LNPLF P+ST G+ + L+K++N E IDLL P S IDR +P Sbjct: 1 MHSSLLNPLFTPISTLPGINTRICSLLAKVLNINLTQREPTLIDLLRLMPHSVIDRRKQP 60 Query: 60 KISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I+ E IVT+ I QH + PY+++ +D T I L+FF+ + L+ E Sbjct: 61 GIAFAQEGSIVTLEVTIDQHKPPTNHNKSPYRVIGHDQTSTINLIFFHAQRSWLEKQLPE 120 Query: 120 GRKITVTGKIKKLKNRIIMVHP-HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 G+K+ ++GK+++ K ++ M+HP H +FH D P IE +Y GLS ++ + +A Sbjct: 121 GKKVIISGKVERFKGQLSMIHPDHIVFHEQLD-QMPFIEPIYPSTAGLSTKTLRRAMQKA 179 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L +P LPEWIE+ + ++ +F S + IH P D S AR+RLAYDE A QI Sbjct: 180 LEYIPSLPEWIEESIKKEHNFSSFPVSLRRIHAPINPDDLALESTARKRLAYDEFFANQI 239 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 AL L+R + K G G +K+L +PF T Q +IKDI D++ MLR+L Sbjct: 240 ALGLVRLKTKLFSGTSRPPTGFYTKKLLEALPFQLTSGQIQSIKDIANDLASPTPMLRLL 299 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVG+GKT+VAL+A+A E GQ+ +M P +LA+QH+ I + + ++TG Sbjct: 300 QGDVGAGKTIVALMAIAQIAENSGQSALMVPTEVLARQHFATITPLAEKIGLQTVLLTGR 359 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R L+ I G+A IIIGTHAL Q+++ Y L L I+DEQHRFGVQQRL LT+K Sbjct: 360 EKGKVRANILDTILSGEASIIIGTHALIQENVTYNNLALAIIDEQHRFGVQQRLTLTEKG 419 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 P +L+MTATPIPRTLVLTS GD+D+S+IT+KP GR+PIKT I RI+E+IER+ Sbjct: 420 NKPDILVMTATPIPRTLVLTSYGDMDVSQITDKPTGRQPIKTATISSERINELIERIATA 479 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 L + +K YWICP +EE S+ RF SL + F S + +IHG+MS +KE+ M SFK Sbjct: 480 LQKKEKIYWICPLVEESTNLELTSIESRFASLQKRFGSCVGMIHGKMSTDEKEAAMTSFK 539 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 N +L+ATTVIEVG+D+ DASII+IE+AEHFGLAQLHQLRGRVGRG++ SSCILLY Sbjct: 540 NANIYILVATTVIEVGVDIPDASIIVIEHAEHFGLAQLHQLRGRVGRGDKKSSCILLYKA 599 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PL+K + RL++++NTEDGF IAEEDL R EGE+LG +QSGMP+F IA +H LL I Sbjct: 600 PLTKAAEARLNIMRNTEDGFKIAEEDLLLRGEGELLGTRQSGMPEFYIANLAVHRELLFI 659 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 A+K+A L DP+L+S +GQ+IR+LLYL+ ++A Q +RAG Sbjct: 660 AKKNAHLFLQHDPNLSSEQGQAIRLLLYLFGRDDALQLLRAG 701 >gi|323136317|ref|ZP_08071399.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC 49242] gi|322398391|gb|EFY00911.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC 49242] Length = 700 Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust. Identities = 311/701 (44%), Positives = 447/701 (63%), Gaps = 2/701 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP L PLF ++ GVG K + +++ A E R +DLLF+ P++ +DR RPK Sbjct: 1 MRPDILAPLFGRVAALPGVGPKTAKLFDRLLARPGA-EARVVDLLFHLPTNVVDRSQRPK 59 Query: 61 ISEISEERIVTITGYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I+E + +V I + +H Q + R P+++L+ D TG+I L+FF + ++ Sbjct: 60 IAEAPMDTMVVIKATVVEHRRPQGRFARAPFRVLVEDETGDIELVFFLANPDWIERSLPI 119 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G ++G+I+ R MVHP + + P EAVY L GL + EA+ Sbjct: 120 GGTRWISGRIELYDGRRQMVHPDRVLDEAGLARLPPFEAVYGLTEGLQTRYVLRATEEAM 179 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 +RLP LPEW E +L P+ AEA H P PAR+RLA DELLA Q+A Sbjct: 180 TRLPALPEWQEPSVLAANKLPAFAEALRGAHRPESVSALSPQHPARQRLALDELLASQLA 239 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L+R + ++ G +G+++Q I +P+S T +Q+ A+ DI D+ RMLR++Q Sbjct: 240 LRLVRAKMRRLPGRENRGDGRLSQAIESALPYSLTGAQQRALADIRADLGSDRRMLRLVQ 299 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT+VA +AMA+ E G Q+ +MAP ILA+QHYE + + + V ++TG + Sbjct: 300 GDVGSGKTIVAALAMASVAECGRQSALMAPTEILARQHYERLAPLLEPVGLRVALLTGRL 359 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + R I G+ +++GTHAL Q + ++ L L +VDEQHRFGVQQRL L K Sbjct: 360 KASERAALHAAIGAGEIDVVVGTHALVQTDLAFHDLGLAVVDEQHRFGVQQRLALGSKGE 419 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 A VL+MTATPIPRTL LT+ GD+D S + EKP GR PI T +P +RI EV+ L+ L Sbjct: 420 AVDVLVMTATPIPRTLALTAFGDMDSSALDEKPPGRTPISTRALPASRIGEVVAGLQRAL 479 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 ++G +AYW+CP +EE ++ + + ER L +F ++ ++HGRM +K++VM++F+ Sbjct: 480 AQGARAYWVCPLVEENEDLDLAAAEERAADLRRYFGDAVGLLHGRMKGPEKDAVMEAFQR 539 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G +LL+ATTVIEVG+DV +A+I++IE+AE FGLAQLHQLRGRVGRG SSC+LLY P Sbjct: 540 GDARLLVATTVIEVGVDVPEATIMVIEHAERFGLAQLHQLRGRVGRGTGESSCLLLYKGP 599 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 LS+ + RL++++ TEDGF IAEEDL+ R EGEILG +Q+GMP F +A H LL IA Sbjct: 600 LSETAKARLTIIRQTEDGFRIAEEDLRLRGEGEILGTRQAGMPGFRLADLTAHARLLAIA 659 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 R DA+ IL +DP+L+S RG+++R+LLYL++ +EA + +RAG Sbjct: 660 RDDAELILRRDPELSSERGKALRVLLYLFERDEAIRLLRAG 700 >gi|307942226|ref|ZP_07657577.1| ATP-dependent DNA helicase RecG [Roseibium sp. TrichSKD4] gi|307774512|gb|EFO33722.1| ATP-dependent DNA helicase RecG [Roseibium sp. TrichSKD4] Length = 700 Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust. Identities = 317/700 (45%), Positives = 460/700 (65%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP L+PLFAP+S+ G+G K + L+ + E DLLF+ P S IDR ++P Sbjct: 1 MRPPVLDPLFAPVSSLPGIGPKIAKLLTGFLTQNPDREATVADLLFHLPHSVIDRRHKPG 60 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 I+ IVT+ I +H + + PYKI D TG+IT +FF+ + + L+ +F G Sbjct: 61 IAYSENGDIVTLDVMIDRHQAPPRGSKAPYKITAFDDTGQITFVFFHPRRDWLEKMFPAG 120 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 + V+GK++ ++ MVHP Y+ + + P +E VY L GL+ +K + A+ Sbjct: 121 ERRIVSGKVEWFNSQPQMVHPDYVVSPEEADSLPTLEPVYPLTAGLASKTLQKGLGAAID 180 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 R+P LPEW++ ++ + S +EA +H P + +D + SP +RLAYDELLA Q+AL Sbjct: 181 RIPHLPEWLDAAHQRRNHWQSFSEALVQVHKPDERQDLDPESPCVQRLAYDELLASQLAL 240 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L+R Q ++ GI G + ++++ +PF T SQ+++I +I D+++ RMLR+LQG Sbjct: 241 ALVRAQMRQLGGIARATTGTLQKEVIAALPFELTASQQTSISEINDDLAKPVRMLRLLQG 300 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VAL A+A +E G Q +MAP ILA+QHY + + I + ++TG Sbjct: 301 DVGSGKTVVALSALAQVIETGAQGALMAPTEILARQHYASMLTLCEKAGIRLALLTGKDS 360 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 RR E++ G+ + +GTHALFQ S+ + L LV+VDEQHRFGV QRL L+ K Sbjct: 361 AKTRRDVQEKLLSGEIDLAVGTHALFQGSVAFRDLGLVVVDEQHRFGVHQRLALSAKGRG 420 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 VL+MTATPIPRTLVLTS GD+D+S++T+KPAGRKPI TV ++R++E+I R+ + Sbjct: 421 VDVLVMTATPIPRTLVLTSFGDMDVSRLTDKPAGRKPITTVSASLDRLEEIISRVGNAIQ 480 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540 G+K YWICP +EE ++ + +V +R L + ++++HGRM+ +KE+ M +FK G Sbjct: 481 SGQKVYWICPLVEESEKIDLAAVGDRHRVLEQALGQPVSLVHGRMTADEKEAGMQAFKGG 540 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L+ATTVIEVG+DV DA+II+IE+AE FGLAQLHQLRGRVGRG++ S+C+LL+ PL Sbjct: 541 DTRVLVATTVIEVGVDVPDATIIVIEHAERFGLAQLHQLRGRVGRGDKPSTCVLLFKGPL 600 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + + +RL++++ T DGFLIAEEDLK R GEILG +QSGMP F IA E H L+E AR Sbjct: 601 GETASSRLNIMRQTNDGFLIAEEDLKLRGGGEILGTRQSGMPGFRIADAESHADLMETAR 660 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ IL +DP L S RG+++R LLYL+ +EA +RAG Sbjct: 661 DDARLILDKDPQLKSERGEALRALLYLFGRDEAIALLRAG 700 >gi|304391608|ref|ZP_07373550.1| ATP-dependent DNA helicase RecG [Ahrensia sp. R2A130] gi|303295837|gb|EFL90195.1| ATP-dependent DNA helicase RecG [Ahrensia sp. R2A130] Length = 702 Score = 632 bits (1631), Expect = e-179, Method: Compositional matrix adjust. Identities = 326/706 (46%), Positives = 461/706 (65%), Gaps = 10/706 (1%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRP 59 MRP LNPLF+PL + G+G K ++ LSK++ G+ + DLLF+ PS IDR RP Sbjct: 1 MRPDILNPLFSPLQSLPGIGPKLAVALSKLLKGGDGKLPAHVSDLLFHLPSGLIDRRNRP 60 Query: 60 KISEISEERIVTITGYISQH-----SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLK 114 I + + + T+ + +H +F++ PYK+ +D +GEI L++F + L+ Sbjct: 61 LIMDAPDGSLATLELRVDRHEEPPRGNFKV----PYKVFGHDESGEIGLVWFRGQARWLR 116 Query: 115 NVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKI 174 + EG V+G+++ R MVHP ++ PL+E VY L G+S+ + K Sbjct: 117 DKLPEGETRIVSGRVEWFNGRPNMVHPDHVVSPENIDELPLVEPVYPLTAGVSLKVMGKA 176 Query: 175 IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234 + LS+LP LPEW E +L K +P++AEA + IH+P+ D A RLAYDELL Sbjct: 177 VDATLSKLPDLPEWAEPSVLAKHEWPAMAEALDRIHHPQDELDLSVHGKAWHRLAYDELL 236 Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 AGQ+AL L+R + K+ GI +G++ + + + P+ T +QE ++ +IL DM+Q RM Sbjct: 237 AGQLALALVRSRMKRSAGIAWVGDGRLQKVVRKTFPYPLTGAQERSVGEILADMAQPERM 296 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 LR+LQGDVGSGKT+VAL+A AA+EAGGQA IMAP ILA+QH I + I + I Sbjct: 297 LRMLQGDVGSGKTIVALLACCAAIEAGGQAAIMAPTEILARQHLATITPLAEAAGIRIAI 356 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 +TG R LER+A G +++GTHALFQ +++ L L IVDEQHRFGV QRL L Sbjct: 357 LTGREKGKTREAILERLADGSIDLLVGTHALFQGPVEFKNLALGIVDEQHRFGVHQRLAL 416 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 K +L+MTATPIPRTLVLT GD+D+SK+ EKPA R PI+T +P+ R+D++I+R Sbjct: 417 AAKGAGADILVMTATPIPRTLVLTFFGDMDVSKLDEKPAHRLPIQTNALPMERLDQLIQR 476 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534 +++G K YW+CP +E+ E S R++SL ++ ++HGRM +K++ M Sbjct: 477 TVDAVAKGDKIYWLCPLVEDNDELPVTSAQARYDSLRALMGDNVGLVHGRMKPTEKDAAM 536 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 FK G ++L+ATTVIEVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG++ SSC+L Sbjct: 537 ADFKEGRTRVLVATTVIEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDKSSSCLL 596 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 LY PL + S RL +++ +EDGF IAEEDLK R EGEILG +QSG P F IAQ E H Sbjct: 597 LYKAPLGEVSTARLKIMRESEDGFRIAEEDLKLRGEGEILGTRQSGTPGFQIAQMEHHGD 656 Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 +LE+AR DA+ ++ DP+L S RG+++R+LLYL+ +EA + +RAG Sbjct: 657 ILELARDDARLVIATDPELESERGKALRVLLYLFSKDEAVRLLRAG 702 >gi|288958503|ref|YP_003448844.1| ATP-dependent DNA helicase [Azospirillum sp. B510] gi|288910811|dbj|BAI72300.1| ATP-dependent DNA helicase [Azospirillum sp. B510] Length = 693 Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust. Identities = 299/700 (42%), Positives = 450/700 (64%), Gaps = 7/700 (1%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP+ L PLF P++ G+G + + K+ +DLL++ P +DR + PK Sbjct: 1 MRPAILFPLFKPVTALPGLGPRLGKLVEKLAG------PHVVDLLWHLPCGVVDRRFSPK 54 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 I++ RI T+T I H+ L R PYKI D TG + L++F+ + + L G Sbjct: 55 IADAPHGRIATLTVRIDSHAP-PLNPRHPYKIRCTDETGVLELVYFHVRGDWLSKQIPAG 113 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 + V+GK++ + + HP + + L+E VY + GL +K + AL+ Sbjct: 114 TTMVVSGKVEWFNDTAQITHPDAVVAVDAKEDLELVEPVYPMTAGLPAKTLRKAVRAALA 173 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 +P L EW + L ++ +P A+A H P D T+P R RLAYDELLA Q+AL Sbjct: 174 DVPALAEWQDPAWLARRQWPGWADALKRAHAPEDEGDLAATAPIRCRLAYDELLANQLAL 233 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 +L+R ++ G +G + + L +PFS T SQ +A++DI DM+ + RMLR+LQG Sbjct: 234 MLVRASQRRLAGRVTQGDGTLRRAALAALPFSLTGSQAAALEDIYVDMAAERRMLRLLQG 293 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VAL+AM AVEAG QA +MAP ILA+QH E + + + + ++TG Sbjct: 294 DVGSGKTVVALMAMLNAVEAGAQAALMAPTEILARQHAESLAPLCRAAGVEIGLLTGRDK 353 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 R+ L+R+A G +++GTHALFQ+ + + L L ++DEQHRFGV QRL+L+ K A Sbjct: 354 GKARQAVLDRLASGDLPLLVGTHALFQEDVAFKDLALAVIDEQHRFGVHQRLQLSAKGRA 413 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 VL+MTATPIPRTL LT+ GD+D+S++TEKPAGRKP++TV I ++R++EV+ ++ ++ Sbjct: 414 VDVLVMTATPIPRTLTLTAYGDMDVSRLTEKPAGRKPVQTVTIALDRLEEVVNGIQRKVA 473 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540 EG + YW+CP ++E ++S+ + ER L F + ++HG+M DK++VM +F G Sbjct: 474 EGARVYWVCPLVDESEQSDLAAATERHAFLRATFGDRVGLVHGKMRGSDKDAVMAAFAEG 533 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L+ATTVIEVG++V +A++++IE+AE FGLAQLHQLRGRVGRGE+ SSC+L++ L Sbjct: 534 GLDVLVATTVIEVGVNVPEATVMVIEHAERFGLAQLHQLRGRVGRGEKPSSCLLMFDANL 593 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 ++ + RL L++TEDGF+IAEEDL+ R GE+LG +QSG+P F +A +H LL +AR Sbjct: 594 TETARARLKTLRDTEDGFIIAEEDLRLRGAGEVLGTRQSGLPGFRMADLAVHGDLLAVAR 653 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ ++ +DPDL S RGQ++R LLYL++ + A + +R+G Sbjct: 654 DDARLVVERDPDLASPRGQALRTLLYLFERDAAAKTLRSG 693 >gi|296445812|ref|ZP_06887764.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium OB3b] gi|296256640|gb|EFH03715.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium OB3b] Length = 700 Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust. Identities = 307/701 (43%), Positives = 442/701 (63%), Gaps = 2/701 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRPS L+PLF + G+G K + +++ ETR +D+LF+ P + +DR RP Sbjct: 1 MRPSILDPLFGRAAALPGIGPKTAKLFDRLL-AAPGKETRLVDILFHLPINLLDRSLRPT 59 Query: 61 ISEISEERIVTITGYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I+E ++IV + +++H Q + + PYKIL+ D TG+ L+FF + ++ Sbjct: 60 IAEAPFDQIVVLKVRVAEHRKPQGRYAKAPYKILVEDDTGDCELVFFLANADWIERSLPL 119 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G V+GK++ R +VHP + + P EAV+ L GL ++ + AL Sbjct: 120 GATRWVSGKLELYDGRRQIVHPDRVLDEAGIAKLPPAEAVHGLTEGLQERFVQRAVEGAL 179 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 RLP LPEW + +L P A A H+P D E AR+RLA DELL+ Q+A Sbjct: 180 ERLPSLPEWQDPSVLAANKLPDFATALREAHHPTSRADVEPMGKARQRLALDELLSQQLA 239 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L+R + K+ G +G+I Q + +PF+ T +Q A+ +I D+S RMLR+LQ Sbjct: 240 LRLLRAKMKRLPGRENAGDGRITQALEAALPFALTGAQTRALAEIRADLSSSRRMLRLLQ 299 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT+VAL+AMA+ VE G QA +MAP ILA+QHYE + + + + ++TG Sbjct: 300 GDVGSGKTIVALLAMASVVECGRQAALMAPTEILARQHYEKLLPLAEGVGLRLALLTGRA 359 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + R + E IA G+A I+IGTH+L Q + + L L ++DEQHRFGVQQRL L K Sbjct: 360 KASERARLHETIAKGEADIVIGTHSLVQSDLAFADLGLAVIDEQHRFGVQQRLALGAKGE 419 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 A VL+MTATPIPR+L LT GD+D S + EKP GR PI T +P++RI +V+E ++ L Sbjct: 420 AADVLVMTATPIPRSLALTYFGDMDSSVLDEKPPGRTPIDTRALPVSRIGDVVEGVRRAL 479 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 G + YW+CP +EE +E + + +R + L F + ++HGRM ++++ M++FK Sbjct: 480 GSGARVYWVCPLVEENEELDLAAAQDRHDDLTRIFGEIVGLVHGRMKGAERDAAMEAFKA 539 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 GT ++L+ATTVIEVG+DV +A++++IE+AE FGLAQLHQLRGRVGRG SSC+LLY P Sbjct: 540 GTTRILVATTVIEVGVDVPEATVMVIEHAERFGLAQLHQLRGRVGRGSGKSSCLLLYKGP 599 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 L + + RL L+ TEDGF IAEEDL+ R EGE+LG +QSG+P F +A H LL A Sbjct: 600 LGETAKARLVTLRQTEDGFRIAEEDLRLRGEGEVLGSRQSGLPGFRLADIAAHARLLATA 659 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 R DA+ IL +DP+L S RG+++R+LLYL++ +EA + +RAG Sbjct: 660 RDDAELILRRDPELASPRGEALRVLLYLFERDEAVRLLRAG 700 >gi|300023169|ref|YP_003755780.1| DEAD/DEAH box helicase [Hyphomicrobium denitrificans ATCC 51888] gi|299524990|gb|ADJ23459.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 704 Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust. Identities = 315/703 (44%), Positives = 448/703 (63%), Gaps = 4/703 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59 MRPSFLNPLFA T G+G ++ L L K + E R IDLL++ P+ IDR P Sbjct: 1 MRPSFLNPLFASAQTISGIGPRFILLLKKCLALPPGVAEPRVIDLLWHMPTGIIDRRAEP 60 Query: 60 KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118 +++ IVT+ + +H R+ P+K+ D TG I L+FF+ + + ++ Sbjct: 61 QLASAVPGSIVTLQLRVLKHKPAPRGNRKAPHKVTCEDDTGRIDLVFFHAERKFIEKQLP 120 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 EG V+G+I++ + M HP YI + P++E VY L GLS + K +A Sbjct: 121 EGEIRFVSGRIERYGEALQMAHPDYIVAPEARDDLPMLEPVYPLTAGLSGKIMVKAARQA 180 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 + R+P LPEW E L+ + +P+ A N IH P A D + +RLAYDELLAGQ+ Sbjct: 181 VDRVPELPEWQESRWLEARGWPAFKTAINRIHRPLDAPDVSNGAGPWQRLAYDELLAGQL 240 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 A L+R+ K E G + +G I QKI +PF T SQ++A+ +I D++ +RMLR+L Sbjct: 241 AFALVRQNMKAERGRRLAGKGDIRQKIADALPFKLTGSQQTALAEISDDLAASHRMLRLL 300 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKT+VAL+ MA A+EAG QA +MAP +LA+QH E I + + + ++TG Sbjct: 301 QGDVGSGKTVVALMTMAVAIEAGAQAALMAPTEVLARQHQETIAPLAEAAGLRIALLTGR 360 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R LER+A G+ I+IGTHALFQ + + L L ++DEQHRFGV QRL L K Sbjct: 361 EKGKVRDAILERLASGETDILIGTHALFQSDVVFKDLALAVIDEQHRFGVHQRLALQAKG 420 Query: 419 TA--PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 +VL+MTATPIPRTL++T GD+D+SK+TEKPAGRKPI T +P+ ++ ++ER++ Sbjct: 421 ANNDTNVLVMTATPIPRTLLMTHYGDLDVSKLTEKPAGRKPITTKALPLESLERLVERIR 480 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 L+EG + YW+CP IE + ++ + ERF L + F + ++HG +S +K+ M + Sbjct: 481 AQLAEGAQVYWVCPLIESSELTDLAAAEERFAHLRQIFGEGVGLLHGALSAKEKDETMAA 540 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F GT K+L+ATTVIEVG++V +A+I++IE+AE FGLAQLHQLRGRVGRG S C+L+Y Sbjct: 541 FAEGTIKILVATTVIEVGVNVPNANIMVIEHAERFGLAQLHQLRGRVGRGSRESFCMLVY 600 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PL + + RL +++ TEDGF IAE+DL+ R GEILG +QSG P F +A+ +D+LL Sbjct: 601 KAPLGETAGQRLKMMEETEDGFKIAEKDLELRGGGEILGARQSGAPGFRVAEVPGYDTLL 660 Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699 A DA IL DP+LTS RGQ++R LLY+++ +EA + RA Sbjct: 661 AAASDDAALILGSDPNLTSPRGQALRTLLYVFECDEAVRLFRA 703 >gi|209964571|ref|YP_002297486.1| ATP-dependent DNA helicase RecG [Rhodospirillum centenum SW] gi|209958037|gb|ACI98673.1| ATP-dependent DNA helicase RecG [Rhodospirillum centenum SW] Length = 693 Score = 612 bits (1579), Expect = e-173, Method: Compositional matrix adjust. Identities = 303/701 (43%), Positives = 452/701 (64%), Gaps = 9/701 (1%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP+ L PLFAP+++ G+G + ++ +DLL++ P+ +DR Sbjct: 1 MRPAVLYPLFAPITSLPGLGPRLGKLAERLAG------PHVVDLLWHKPAGILDRMAVES 54 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 I E R VT+T + H+ L RPY++ D TG + L+FF+ K + L G Sbjct: 55 IEAAPEGRHVTLTVRVDGHAP-PLAANRPYRVRCTDHTGLMDLVFFHIKGDWLTKRLPVG 113 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEAL 179 +K+ V+GK ++ ++ +VHP Y F ++D P +E VY L GL+ + I AL Sbjct: 114 QKVVVSGKAERFNGQLQIVHPDY-FGPAEDAPPPTAVEPVYPLTGGLNPKPLRTAIQAAL 172 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 R P LPEW + L+++ +P A +H+P D PAR RLAYDELLA Q+A Sbjct: 173 QRAPALPEWQDPAWLKRQGWPDWLTALRTLHHPEGEHDIAPDGPARARLAYDELLANQLA 232 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L+R ++ G P+ +G + K+L +P++ T +Q A+++I DM+ +RMLR+LQ Sbjct: 233 LALVRWHQRRLAGRPVAGDGHLRDKVLATLPYALTGAQRLALEEIQADMAADSRMLRLLQ 292 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT+VAL+AM AVEAG QA +MAP ILA+QH E + + + ++TG Sbjct: 293 GDVGSGKTIVALLAMLNAVEAGCQAALMAPTEILARQHAESLAPLCATAGVELAVLTGRD 352 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R+ L+R+A G+ HI++GTHA+FQ+ + ++ L L ++DEQH+FGV QRL+L K Sbjct: 353 KGKARQAVLDRLADGRIHILVGTHAVFQEDVAFHDLALAVIDEQHKFGVHQRLQLAAKGR 412 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 L+MTATPIPRTL LT+ GD+++S++TEKP GR+P+KTV++P R++EVI L + Sbjct: 413 GVDTLVMTATPIPRTLTLTAYGDMEVSRLTEKPPGRRPVKTVVLPAERLEEVIASLPRAI 472 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 + G++ YW+CP +EE ++ + + R L E F + ++HGRM +K++ M +F Sbjct: 473 AGGQRIYWVCPLVEESEQVDVAAATLRHADLRERFGERVGLVHGRMKGAEKDAAMAAFAE 532 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G +L+ATTVIEVG++V +A+I++IE+AE FGLAQLHQLRGRVGRG SSC+LLY+PP Sbjct: 533 GRLDVLVATTVIEVGVNVPEATIMVIEHAERFGLAQLHQLRGRVGRGAAASSCLLLYYPP 592 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 L + + RLSV+K +EDGFLIAE+DL+ R GE+LG +QSG+P+F +A H LL A Sbjct: 593 LGETARERLSVMKESEDGFLIAEKDLQLRGAGEVLGTRQSGLPEFRLADLAAHGDLLTAA 652 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 R DA+ IL +DP+L S RG+++R LLYL++ + A +++R+G Sbjct: 653 RDDARLILERDPELQSPRGEALRTLLYLFERDAAVKYLRSG 693 >gi|154253519|ref|YP_001414343.1| ATP-dependent DNA helicase RecG [Parvibaculum lavamentivorans DS-1] gi|154157469|gb|ABS64686.1| DEAD/DEAH box helicase domain protein [Parvibaculum lavamentivorans DS-1] Length = 694 Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust. Identities = 301/701 (42%), Positives = 447/701 (63%), Gaps = 8/701 (1%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP L PLFAP + G+G + + K+ + ID+L++ PS IDR +RP Sbjct: 1 MRPEILFPLFAPARSLPGIGPRLEALVEKLAG------PKVIDILWHLPSGLIDRRHRPS 54 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 I+++ + I T+ + H + KR PY++ + D TGE+ ++FF + E L + EG Sbjct: 55 IADVRDGEIATMEVTVGLHIPPR-TKRLPYRVHVFDDTGEMQIVFFNARAEHLAKILPEG 113 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 ++ ++G+++ + M HP ++ + + PL+E +Y L GL + +K + AL Sbjct: 114 QRRIISGRVEFYQGTPQMTHPDHMIGLDELADLPLMEPIYPLTAGLPLKSIQKAVRGALP 173 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 RLP LPEW + L+ + + + ++ H + A D +PAR RLAYDELLA Q+AL Sbjct: 174 RLPELPEWQDGPWLKARGWTNWRQSLIAAHELQSAADLGADAPARARLAYDELLANQLAL 233 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L+R + ++ G I+ G++ +K+ +PF+ T +Q A+ +I DM +RMLR+LQG Sbjct: 234 GLVRLRMRRLPGRSISAPGQLRKKVEAALPFALTNAQIRALSEISADMKSNHRMLRLLQG 293 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VAL+AM AVEAG QA +MAP ILA+QHY + + +E++TG Sbjct: 294 DVGSGKTVVALLAMLDAVEAGFQAAMMAPTEILARQHYATLAPLCDAAGVRLELLTGREK 353 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-T 419 R + L R A G+ I++GTHALFQ+ + + L +VDEQHRFGV QRL LT K T Sbjct: 354 GKRREEILARAAAGEIDILVGTHALFQEDVAFRALAFAVVDEQHRFGVHQRLMLTSKGGT 413 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 VL+MTATPIPRTL LT+ GD+D+SK+ EKP GRKP+ T +P++R+ EV L L Sbjct: 414 GTDVLVMTATPIPRTLTLTAYGDMDVSKLDEKPPGRKPVDTRALPLDRLGEVAAGLDRAL 473 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 + G + YW+CP +EE E + + ER L + + ++HGRM DK++VM F+ Sbjct: 474 ARGDQIYWVCPLVEESDEVDAAAAEERHRHLQSIYGEKVGLVHGRMKAADKDAVMARFQA 533 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G ++L+ATTVIEVG++V A++++IE+AE FGLAQLHQLRGRVGRG + SSC+LLY P Sbjct: 534 GDIRILVATTVIEVGVNVPTATVMVIEHAERFGLAQLHQLRGRVGRGGDKSSCLLLYQAP 593 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 L + + R+ +++ TEDGF IAEEDL+ R GE+LG +QSG+P+F +A E LL +A Sbjct: 594 LGETAAARIKIMRETEDGFRIAEEDLRLRGAGELLGTRQSGLPEFRLANIETQQELLAVA 653 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ IL +DP+L S RG+++R LLYL++ +EA +++R+G Sbjct: 654 YDDARLILDRDPELESPRGEALRTLLYLFERDEAIRYLRSG 694 >gi|144898256|emb|CAM75120.1| ATP-dependent DNA helicase recG [Magnetospirillum gryphiswaldense MSR-1] Length = 693 Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust. Identities = 305/700 (43%), Positives = 449/700 (64%), Gaps = 7/700 (1%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRPS LNPLFAP++T G+G K + F ++ R +DLL++ PS IDR + PK Sbjct: 1 MRPSLLNPLFAPITTLAGIGPKLAPFYERLAGG------RVVDLLWHLPSGVIDRRFAPK 54 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 ++E ++ TIT + H KR PY++ +D TG L+FF+ + + L+ +G Sbjct: 55 LAEAPAGKVATITVQVEAHFPSSSPKR-PYRVRCSDETGFAHLVFFHGREDWLRRQLPDG 113 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 ++G ++ + I + HP +I ++ IE VY L GL+ + K I A+ Sbjct: 114 EWRVISGVVEHFNDGIQITHPDHIVPLAEREQVMNIEPVYPLTGGLTARMVAKTIRTAVD 173 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 + P +PEW + + ++PS +A + +H P+ + +PAR RLA+DELLA Q+AL Sbjct: 174 QAPQMPEWQDAAWFARNAWPSWRQALDSLHRPQSEQAVIEDNPARRRLAFDELLANQLAL 233 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 +++R +K G PI V + ++L +PF+ T +Q ++ +I DM++ RMLR+LQG Sbjct: 234 MMVRAHMRKLKGRPIPVSTHLRPQVLAALPFTLTAAQTRSLAEIDADMAEPLRMLRLLQG 293 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VAL+AM AVE+G QA +MAP ILA+QH + I + + V ++TG Sbjct: 294 DVGSGKTVVALLAMLNAVESGAQAALMAPTEILARQHMDTIAPLVEGAGLRVALLTGRDK 353 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 R L +A G+ IIIGTHALFQ+ + Y L ++DEQHRFGV QRL+L K A Sbjct: 354 GKARDAILADLAAGRVQIIIGTHALFQEDVAYADLAFAVIDEQHRFGVHQRLELASKGQA 413 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 +L+MTATPIPRTL+LTS GD+D S++ EKP GR+P+ T +P++R+DEV++ + + Sbjct: 414 VDMLVMTATPIPRTLLLTSYGDMDASRLDEKPPGRQPVSTRALPLSRMDEVVDGIGRAVK 473 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540 G + YW+CP +E+ + S+ + ER L + F + ++HG+M + K+ VM F G Sbjct: 474 AGARVYWVCPLVEDSETSDLAAAEERHRHLSQVFGDGVGLVHGKMKGLAKDKVMADFAAG 533 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L+ATTVIEVG++V +A+I++IE+AE FGLAQLHQLRGRVGRG SSC+LLY PL Sbjct: 534 QLSVLVATTVIEVGVNVPEATIMVIEHAERFGLAQLHQLRGRVGRGSGASSCLLLYGAPL 593 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S+N+ RL +++ TEDGF+IAEEDL+ R GEILG +QSG+P+F +A LH LL AR Sbjct: 594 SENAKARLEIMRATEDGFVIAEEDLRLRGGGEILGTRQSGLPEFKLADLALHGDLLAAAR 653 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA IL +DP+LTS RGQ++R+LLYL++ + A +R+G Sbjct: 654 DDAALILARDPELTSERGQALRVLLYLFERDAAVHTLRSG 693 >gi|83311566|ref|YP_421830.1| ATP-dependent DNA helicase RecG [Magnetospirillum magneticum AMB-1] gi|82946407|dbj|BAE51271.1| RecG-like helicase [Magnetospirillum magneticum AMB-1] Length = 693 Score = 605 bits (1560), Expect = e-171, Method: Compositional matrix adjust. Identities = 298/700 (42%), Positives = 447/700 (63%), Gaps = 7/700 (1%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP L PLFAP++T G+G + + +++ + +DLL++ P+ +DR + PK Sbjct: 1 MRPQVLFPLFAPVTTLPGIGPRLAPLYQRLVG------DKVLDLLWHLPTGVVDRRFAPK 54 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 ++E ++ T+T + H KR PY++ ++D TG + L+FF+ + + L+ EG Sbjct: 55 VAEAPHGKVATLTLRVDAHFPSSSPKR-PYRVRMSDETGFLHLVFFHGREDWLRKQLPEG 113 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 V+G+++ N I + HP +I Q +E VY L GL+ K + A++ Sbjct: 114 EIRVVSGQVEHFNNEIQISHPDHIVPLDQIAQVMAVEPVYGLTAGLTGRAVAKTVAAAVA 173 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 + P LPEW + L ++++P+ A +H+P +PAR RLA+DELLA Q+AL Sbjct: 174 KAPELPEWQDVHWLDRQNWPTWHAALTALHHPADEHGAIGDTPARRRLAFDELLANQLAL 233 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 ++R Q +K G P+ +G + K++ +P++ T +Q ++ +I DM+Q RMLR+LQG Sbjct: 234 AMVRAQMRKLKGRPLVGDGSLRSKVMAALPYTLTGAQSRSLAEIDADMAQPLRMLRLLQG 293 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VAL+AM AVEAG QA +MAP ILA+QHY I + + V ++TG Sbjct: 294 DVGSGKTVVALLAMLTAVEAGCQAAMMAPTEILARQHYAGIAPLAEAAGLKVALLTGRDK 353 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 R L +A G+ HI++GTHALFQ+ + + L L ++DEQHRFGV QRL+L K A Sbjct: 354 GKARDAVLAGLASGETHIMLGTHALFQEDVAFKDLALAVIDEQHRFGVHQRLELAAKGLA 413 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 +L+MTATPIPRTL+LT+ GD+D S++ EKP GRKPI T ++P+ R+DE++ + +S Sbjct: 414 VDMLVMTATPIPRTLLLTAYGDMDASRLDEKPPGRKPIDTRVVPLARLDEMVAGVGRAIS 473 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540 G +AYW+CP +EE + S+ + ER L + F + ++HGRM K+ VM F G Sbjct: 474 GGARAYWVCPLVEESETSDLAAAEERHRHLSQVFGDRVGLVHGRMKGAAKDKVMAEFAAG 533 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L+ATTVIEVG+DV A+I++IE+AE FGLAQLHQLRGRVGRG S C+LLY PL Sbjct: 534 ELDILVATTVIEVGVDVPAANIMVIEHAERFGLAQLHQLRGRVGRGTRESRCLLLYGHPL 593 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + + RL +++ TEDGF IAEEDL+ R GE+LG +QSG+P+F +A +H LL AR Sbjct: 594 GEIAKARLEIMRATEDGFRIAEEDLRLRGGGEMLGTRQSGLPEFRLADLAIHGELLAAAR 653 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ IL +DP+L+ RG+++R+LLYL++ + A + +R+G Sbjct: 654 DDARLILDRDPELSGPRGEALRVLLYLFERDAAVRTLRSG 693 >gi|217978366|ref|YP_002362513.1| ATP-dependent DNA helicase RecG [Methylocella silvestris BL2] gi|217503742|gb|ACK51151.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2] Length = 690 Score = 602 bits (1552), Expect = e-170, Method: Compositional matrix adjust. Identities = 315/703 (44%), Positives = 444/703 (63%), Gaps = 16/703 (2%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRPS LNPLFA ++ GVG K L ++ G E R +DLLF+ P+ +DR R K Sbjct: 1 MRPSILNPLFASAASLPGVGPKTGKLLDRLFGVG---EARVLDLLFHLPAGVVDRRTRAK 57 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 I+E + IV I + +H + + P ++L+ D TG+I L+FF ++ G Sbjct: 58 IAEAPLDAIVVIEVMVVEHRPAR--GKGPTRVLVEDETGDILLVFFLTNHNWIERSLPVG 115 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 K V+GK++ MVHP + +E VY L GLS L K + AL+ Sbjct: 116 AKRWVSGKLEIWDGHRQMVHPDRVLDAEGLAKMAPVEPVYPLTDGLSQRLLAKAVDGALA 175 Query: 181 RLPVLPEWIEKDLLQKKSFPS---IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237 RLP LP+W P+ +A H P+ +D + AR++LA DE+LAGQ Sbjct: 176 RLPALPDW--------GGMPAQLNFVQALAAAHRPQTPEDILPEAAARKKLASDEMLAGQ 227 Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 +AL LMR + ++ G +G+IAQKI +PFS T+ QE A+ +I D+S ++RMLR+ Sbjct: 228 LALGLMRARERRMPGRASAGDGRIAQKIRAALPFSLTRGQEQALAEIRADLSSESRMLRL 287 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 LQGDVGSGKTLVAL+AMA+ VEAG QA +MAP ILA+QH+ ++++ + + + ++TG Sbjct: 288 LQGDVGSGKTLVALLAMASCVEAGRQAALMAPTEILARQHFASLQRFAEPGGLRLALLTG 347 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 R K L +A G+ I+IGTHALFQ + + L L +VDEQHRFGV+QRL L K Sbjct: 348 RDKGVSRDKTLRALASGEIDILIGTHALFQQGVDFRDLALAVVDEQHRFGVRQRLALGDK 407 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 +L MTATPIPR+LVLT GD++IS I EKP GR+PI+T +P R+ E+IERL Sbjct: 408 GERTDILAMTATPIPRSLVLTYFGDMEISTIREKPVGRQPIETRALPTERLGELIERLSA 467 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537 L+ G +AYW+CP +EE + + + ERF L + F ++ +IHG+M DK++ M++F Sbjct: 468 ALAAGAQAYWVCPLVEESEALDVAAAQERFEDLQKFFGPAVGLIHGKMKGKDKDAAMEAF 527 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 GT K+L+ATTVIEVG+D ASII+IE+AE FGLAQLHQLRGRVGRG S+CILLY Sbjct: 528 LAGTTKILVATTVIEVGVDAPQASIIVIEHAERFGLAQLHQLRGRVGRGSAKSACILLYK 587 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PL + + R+ +L+ +EDGF IAEEDL+ R EGE+LG KQSG+P F +A P H LL Sbjct: 588 GPLGETAKARIEILRESEDGFRIAEEDLRLRGEGEVLGQKQSGLPGFRLADPAAHADLLV 647 Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 AR++A+ I+ ++P L +G+++R+LL +++ EA + + AG Sbjct: 648 EARREAQRIVAENPKLEGEKGEALRLLLNIFERAEAIRLLGAG 690 >gi|163747148|ref|ZP_02154504.1| ATP-dependent DNA helicase RecG [Oceanibulbus indolifex HEL-45] gi|161379709|gb|EDQ04122.1| ATP-dependent DNA helicase RecG [Oceanibulbus indolifex HEL-45] Length = 696 Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust. Identities = 299/701 (42%), Positives = 442/701 (63%), Gaps = 10/701 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPK 60 RP L PLFA L T GVG K + L+++ I DL+F P S IDR R Sbjct: 4 RPEQLFPLFAGLETLEGVGPKTAQLLNQLAIQAPR-------DLIFTLPHSGIDRRLRDS 56 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 + + +T+ I H + K Y+I + D L++F+ + + + EG Sbjct: 57 VQDAHLPATITVAVTIGAHRPART-KGGAYRITVEDAQTSFQLVYFHARGDYWQRQLPEG 115 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 + V+G+++ MVHP + Q + P E VY L GL+ + K AL+ Sbjct: 116 SRRIVSGRVEFFDGIAQMVHPDFAVPEEQAGDIPDFEPVYPLTAGLTQKVMYKATRGALA 175 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 RLPV+ EW + + + ++P A A H+P+ A+D T+PARERLAYDELLA Q+ L Sbjct: 176 RLPVVAEWADPGQVAQANWPDFAAAAEAAHDPQTAQDLTATAPARERLAYDELLAHQVTL 235 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L R+ +++ G + +G++ Q++L+++P+SPT +Q AI +I DM Q+ RM R+LQG Sbjct: 236 ALARQSERRKKGRASHGDGRLEQRVLKSLPYSPTGAQRRAIDEITADMGQETRMNRLLQG 295 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVG+GKTLVA +A+ AVEAGGQAV+MAP ILA+QH ++ + +++EI+TG Sbjct: 296 DVGAGKTLVAFMALLRAVEAGGQAVLMAPTEILARQHLMGLQPLAEQAGVVLEILTGRDK 355 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 A RR L + G I++GTHA+FQ + + L L +VDEQHRFGV+QRL+L +K Sbjct: 356 GAERRAKLAALERGDIQILVGTHAVFQADVSFADLRLAVVDEQHRFGVRQRLELGRKGRL 415 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 VL+MTATPIPR+L L GD+D+S + EKP GR+ I+T ++ +R+DEVIER++ +S Sbjct: 416 ADVLVMTATPIPRSLALAQYGDMDVSILDEKPPGRQAIRTALVSTSRMDEVIERMRHAIS 475 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKN 539 EG++ YW+CP +EE + S+ + +RF L F + ++HG+M +K++ M +F+ Sbjct: 476 EGRQCYWVCPLVEESEVSDLTAAEDRFKRLRAAFGEGVVGLVHGQMPPAEKDAAMRAFQT 535 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G K+L+ATTVIEVG+DV +A+I+++E AE FGLAQLHQLRGRVGRGE S+C+L+Y P Sbjct: 536 GETKVLVATTVIEVGVDVPNATIMVVERAEIFGLAQLHQLRGRVGRGEGASTCLLMYQAP 595 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 LS+ RL VL+ +EDGF+IAE DLK R G+++G QSG+P+F +A E LL +A Sbjct: 596 LSETGRQRLEVLRESEDGFVIAETDLKMRGTGDLIGTAQSGVPRFRVADLERQAGLLAVA 655 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 + DA+ +LT DP L RG+++R+LL+L + +EA + I G Sbjct: 656 QSDARKLLTDDPTLEGPRGKAVRLLLWLMRQDEAIRLISVG 696 >gi|188583859|ref|YP_001927304.1| ATP-dependent DNA helicase RecG [Methylobacterium populi BJ001] gi|179347357|gb|ACB82769.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi BJ001] Length = 729 Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust. Identities = 315/706 (44%), Positives = 447/706 (63%), Gaps = 10/706 (1%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 +RPS L+PLFAP GVG K + + K++ R DLLF+ P S + R Sbjct: 28 LRPSILDPLFAPARGLPGVGPKIAPLIEKLLGS-EERPARVADLLFHLPQSGVARPLCGS 86 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 I + VT+ + H L KR +++L+ DGTG+I+L+FF ++ + G Sbjct: 87 IRDAPTGEPVTLGVTVVAHRPPMLGKR-AFRVLVEDGTGDISLVFFGMPRGRIEKMLPIG 145 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 V+G+I MVHP I + + P +E +Y GL+ + KI+ AL Sbjct: 146 AHRYVSGRIDLWDGTRQMVHPSRILDEAGLASLPAVEPIYGATEGLTSRVISKIVHGALD 205 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW------TSPARERLAYDELL 234 RLPVLPEW + L + FP AEA I H P +A SPAR+RLAYDELL Sbjct: 206 RLPVLPEWQDPAYLARNRFPPFAEALRIEHRPEEAPPPPVEGQAPPASPARKRLAYDELL 265 Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 A Q+AL L+R + +++ G +G + +++ +PF+ T +Q A+++I DM+ + RM Sbjct: 266 ASQLALALVRARQRRKAGRVNAGDGHLKEQVAAALPFALTGAQARAVEEIRADMAAERRM 325 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 LR+LQGDVGSGKT VAL+AMA+AVEAG QA +MAP ILA+QHYE + ++ + Sbjct: 326 LRLLQGDVGSGKTAVALLAMASAVEAGRQAALMAPTEILARQHYERLVPLAGAMRL--RL 383 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 +TG A RR L +A G+ I++GTHALFQ+++ + L L +VDEQHRFGV QRL L Sbjct: 384 LTGRDRAAERRATLADLAAGEIDIVVGTHALFQEAVAFRDLGLAVVDEQHRFGVHQRLAL 443 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 K A +L+MTATPIPRTL LT GD+D+S + EKPAGR+PIKT+ +P+ RIDEV+ Sbjct: 444 GAKGEAVDILVMTATPIPRTLALTFFGDMDVSVLDEKPAGRQPIKTITVPVERIDEVVAG 503 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534 L L G + YWICP + E + + + ERF L +HF ++ +IHG+M +K++ M Sbjct: 504 LHRALQAGDRVYWICPLVAESEYVDLAAAAERFEDLQKHFGDAVGLIHGKMPGPEKDAAM 563 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 ++F G ++L++TTV+EVG+DV +A+I++IE+AE FGLAQLHQLRGRVGRG + SSC+L Sbjct: 564 EAFAAGRTRVLVSTTVVEVGVDVPEATIMVIEHAERFGLAQLHQLRGRVGRGSKASSCLL 623 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 LY PL + + RL +++ +EDGF IAEEDL+ R EGE+LG +QSGM F +A+ E Sbjct: 624 LYRGPLGQVAKARLEMMRGSEDGFRIAEEDLRLRGEGEVLGTRQSGMAAFRLARLESDGD 683 Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 LLE AR DA+ I+ +DP L+S RG+++R+LLYL++ A + I AG Sbjct: 684 LLEAARDDARLIIERDPRLSSERGRALRVLLYLFEREAAIRLIGAG 729 >gi|254563488|ref|YP_003070583.1| DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration [Methylobacterium extorquens DM4] gi|254270766|emb|CAX26771.1| DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration [Methylobacterium extorquens DM4] Length = 729 Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust. Identities = 314/706 (44%), Positives = 446/706 (63%), Gaps = 10/706 (1%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 +RPS L+PLFAP GVG K + + K++ R DLLF+ P S + R Sbjct: 28 LRPSLLDPLFAPARGLPGVGPKIAPLIEKLLGS-EERPARVADLLFHLPQSGVARPLCGS 86 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 I + VT+ + H L KR +++L+ DGTG+I+L+FF ++ + G Sbjct: 87 IRDAPTGEPVTLGVTVVAHRPPMLGKR-AFRVLVEDGTGDISLVFFGMPRGRIEKMLPLG 145 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 V+G+I MVHP I + P +E +Y GL+ + +I+ AL Sbjct: 146 SHRYVSGRIDLWDGTRQMVHPSRILDQEGLASLPAVEPIYGATEGLTSRVISRIVHGALD 205 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW------TSPARERLAYDELL 234 RLPVLPEW + L + FP AEA I H P +A SPAR+RLAYDELL Sbjct: 206 RLPVLPEWQDASYLARNRFPPFAEALRIEHRPEEAPPPPVEGQAPPASPARKRLAYDELL 265 Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 A Q+AL L+R + +++ G +G + +++ +PF+ T +Q A+++I DM+ + RM Sbjct: 266 ASQLALALVRARQRRKPGRVNAGDGHLKERVEAALPFALTGAQARAVEEIRADMAAERRM 325 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 LR+LQGDVGSGKT VAL+AMA+AVEAG QA +MAP ILA+QHYE + ++ + Sbjct: 326 LRLLQGDVGSGKTAVALLAMASAVEAGRQAALMAPTEILARQHYERLVPLAGAMRL--RL 383 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 +TG A RR L +A G+ I++GTHALFQ+S+ + L L +VDEQHRFGV QRL L Sbjct: 384 LTGRDRAAERRATLADLAAGEIDIVVGTHALFQESVAFRDLGLAVVDEQHRFGVHQRLAL 443 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 K A +L+MTATPIPRTL LT GD+D+S + EKPAGR+PIKT+ +P+ RIDEV+ Sbjct: 444 GAKGEAVDILVMTATPIPRTLALTFFGDMDVSVLDEKPAGRQPIKTITVPVERIDEVVGG 503 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534 L L+ G + YWICP + E + + + ERF L +HF ++ +IHG+M +K++ M Sbjct: 504 LHRALAAGDRVYWICPLVAESEYVDLAAAAERFEDLQKHFGDAVGLIHGKMPGPEKDAAM 563 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 ++F G ++L++TTV+EVG+DV +A+I++IE+AE FGLAQLHQLRGRVGRG + SSC+L Sbjct: 564 EAFAAGRTRVLVSTTVVEVGVDVPEATIMVIEHAERFGLAQLHQLRGRVGRGSKASSCLL 623 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 LY PL + + RL +++++EDGF IAEEDL+ R EGE+LG +QSG F +A+ E Sbjct: 624 LYRGPLGQVAKARLEMMRSSEDGFRIAEEDLRLRGEGEVLGTRQSGAAAFRLARLETDGD 683 Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 LLE AR DA+ I+ +DP L S RG+++R+LLYL++ A + I AG Sbjct: 684 LLEAARDDARLIVERDPRLASERGRALRVLLYLFEREAAIRLIGAG 729 >gi|56696563|ref|YP_166920.1| ATP-dependent DNA helicase RecG [Ruegeria pomeroyi DSS-3] gi|56678300|gb|AAV94966.1| ATP-dependent DNA helicase RecG [Ruegeria pomeroyi DSS-3] Length = 696 Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust. Identities = 299/700 (42%), Positives = 435/700 (62%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLFA L T GVG K + + + + R DLLF P S +DR R I Sbjct: 4 RPEQLFPLFAGLETLEGVGPKTAQLFAHL----DVETPR--DLLFSLPYSVVDRRRRDTI 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 +T+ + H + + Y+I + D + L+FF+ + + LK V EG Sbjct: 58 RGADLPATLTVEVTVGAHRPAR-GRGGAYRIFVEDAQADFQLVFFHARGDYLKKVLPEGS 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+GK++ MVHP +I ++ P E VY L G+S K AL+R Sbjct: 117 RRVVSGKVELFDGMANMVHPDHILPVAEAGEIPEFEPVYPLTQGVSQRTAFKAARSALAR 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 LP L +WI+ L ++ +P A+A H P+ D T+PAR RLAYDEL A Q+ L Sbjct: 177 LPDLADWIDPALRAREGWPDWADAMRAAHAPQGLDDVAATAPARMRLAYDELFAHQLTLA 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R++ +K GI G + ++L ++P+ PT +Q AI++I DM+ RM R+LQGD Sbjct: 237 LARRRERKARGISSVATGALQSRVLASLPYRPTNAQARAIEEIAADMAAPARMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVA +A+ AVEAGGQ V+MAP ILA+QH E ++ + +++E++TG Sbjct: 297 VGAGKTLVAFMALLVAVEAGGQGVMMAPTEILARQHLEGLRPLAEEAGVVLELLTGRDKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 A RR L + G I++GTHA+FQ +++ L L IVDEQHRFGV+QR++L +K Sbjct: 357 AERRAKLAALKKGDISILVGTHAVFQADVEFADLRLAIVDEQHRFGVRQRMELAEKGMNA 416 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L GD+D+S + EKP GRKPI+T +I R+DEVI+ L+ ++E Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPIRTAVISTERMDEVIDHLRRAIAE 476 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540 G++ YW+CP ++E + S+ + +RF L + ++HG+M +K++ M +F+ G Sbjct: 477 GRQCYWVCPLVDESEVSDLTAAEDRFKRLRAVLGEGVVGLVHGQMPPAEKDAAMAAFQTG 536 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L+ATTVIEVG++V +A+I++IE AE FGLAQLHQLRGRVGRGE S+C+L+Y PPL Sbjct: 537 ETQVLVATTVIEVGVNVPNATIMVIERAEIFGLAQLHQLRGRVGRGEAASTCLLMYQPPL 596 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 ++ RL VL+ TEDGF IAE DL R G+++G QSG+PKF IA E H +L+ A+ Sbjct: 597 TEGGRRRLEVLRETEDGFRIAETDLDMRGAGDLIGTAQSGLPKFRIADLERHTALMATAQ 656 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L QDP+L+S RG++ RILL+L + ++A + I G Sbjct: 657 TDARALLAQDPELSSERGRAARILLWLMKQDQAIRLISVG 696 >gi|115524794|ref|YP_781705.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115518741|gb|ABJ06725.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris BisA53] Length = 699 Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust. Identities = 314/701 (44%), Positives = 442/701 (63%), Gaps = 3/701 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP LNPLFA +++ GVG K +++ A+ R +DLL + P++ IDR RPK Sbjct: 1 MRPELLNPLFALVTSLSGVGPKQDKLFRYLLD--RADTPRLVDLLLHLPTTVIDRRARPK 58 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I + +VT+ + +H + R P+ + +D +G++ L +F + ++ + Sbjct: 59 IRDAVPGTVVTLEVTVDRHRPAPPGRSRAPHLVYASDDSGDVVLTYFRAQPGYVEKLLPV 118 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G K V+G + + +VHP + + I+ VY L GL++ ++ I +AL Sbjct: 119 GAKRYVSGTAQMFDGTLQIVHPDRVVDEAGLAQLTGIDPVYPLTEGLALGSLRRAIAQAL 178 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 ++LP LPEWI D+L++ FP +AEA +H P + D P RLAYDELLAGQ+A Sbjct: 179 TKLPALPEWISPDVLRRCGFPPLAEALQRVHRPIELTDVLPAGPFWSRLAYDELLAGQLA 238 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L+R Q ++ G +G++ +I+ +P++ T SQ+ A I +D+ Q RMLR+LQ Sbjct: 239 LALVRAQLRRPAGTRNAGDGQLRSRIIDALPYALTPSQQDAAAAIAEDLRQPVRMLRLLQ 298 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT+VAL+A AA E G QA +MAP ILA+QH + I + EI+TG Sbjct: 299 GDVGSGKTVVALLAAAAVAEVGKQAALMAPTEILARQHAKTITPLAARAGLNAEILTGRE 358 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 RR L R+A G+ HIIIGTHAL QD + + L L +VDEQHRFGV++RL LT K Sbjct: 359 KGKERRDILARLASGEIHIIIGTHALIQDDVAFNDLALAVVDEQHRFGVRERLALTSKGD 418 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 A VL+++ATPIPRTLVLT GD+D+S++ EKPAGR+PI T +P+ R+ EV++ + L Sbjct: 419 AVDVLVLSATPIPRTLVLTYFGDMDVSELREKPAGRQPIDTRAVPMVRLAEVMDAVGRAL 478 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 + GK YWICP +EE + + RF SL E + + ++HGRM +DK+SVM F Sbjct: 479 AGGKLVYWICPLVEESEAVDLTDAERRFESLKERYGDRVGLVHGRMRGVDKDSVMAQFAA 538 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 +L+ATTV+EVG+DV DA+I++IENAE FGLAQLHQLRGR+GRG E S+C+LLY P Sbjct: 539 HEIGVLVATTVVEVGVDVPDATIMVIENAERFGLAQLHQLRGRIGRGSEASTCLLLYKDP 598 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 L + S RL V++ T DGF IAEEDLK R EG+ILG +QSG+P + IA+ E H L+ A Sbjct: 599 LGEMSAARLRVIRETTDGFRIAEEDLKLRGEGDILGTRQSGLPGYRIARSEFHAQLIAQA 658 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 R +A IL +DP L RG+++R LLYLY+ +EA I AG Sbjct: 659 RDEALRILKEDPKLKGPRGEALRCLLYLYERDEALPLIGAG 699 >gi|218532418|ref|YP_002423234.1| ATP-dependent DNA helicase RecG [Methylobacterium chloromethanicum CM4] gi|218524721|gb|ACK85306.1| DEAD/DEAH box helicase domain protein [Methylobacterium chloromethanicum CM4] Length = 729 Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust. Identities = 314/706 (44%), Positives = 445/706 (63%), Gaps = 10/706 (1%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 +RPS L+PLFAP GVG K + + K++ R DLLF+ P S + R Sbjct: 28 LRPSLLDPLFAPARGLPGVGPKIAPLIEKLLGS-EERPARVADLLFHLPQSGVARPLCGS 86 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 I + +T+ + H L KR +++L+ DGTG+I+L+FF ++ + G Sbjct: 87 IRDAPTGEPITLGVTVVAHRPPMLGKR-AFRVLVEDGTGDISLVFFGMPRGRIEKMLPLG 145 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 V+G+I MVHP I + P +E +Y GL+ + +I+ AL Sbjct: 146 SHRYVSGRIDLWDGTRQMVHPSRILDQEGLASLPAVEPIYGATEGLTSRVISRIVHGALD 205 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW------TSPARERLAYDELL 234 RLPVLPEW + L + FP AEA I H P +A TSPAR+RLAYDELL Sbjct: 206 RLPVLPEWQDASYLARNRFPPFAEALRIEHRPEEAPPPPVEGQAPPTSPARKRLAYDELL 265 Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 A Q+AL L+R + +++ G +G + +++ +PF+ T +Q A+ +I DM+ + RM Sbjct: 266 ASQLALALVRARQRRKPGRVNAGDGHLKERVEAALPFALTGAQARAVDEIRADMAAERRM 325 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 LR+LQGDVGSGKT VAL+AMA+AVEAG QA +MAP ILA+QHYE + ++ + Sbjct: 326 LRLLQGDVGSGKTAVALLAMASAVEAGRQAALMAPTEILARQHYERLVPLAGAMRL--RL 383 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 +TG A RR L +A G+ I++GTHALFQ+S+ + L L +VDEQHRFGV QRL L Sbjct: 384 LTGRDRAAERRATLADLAAGEIDIVVGTHALFQESVAFRDLGLAVVDEQHRFGVHQRLAL 443 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 K A +L+MTATPIPRTL LT GD+D+S + EKPAGR+PIKT+ +P+ RIDEV+ Sbjct: 444 GAKGEAVDILVMTATPIPRTLALTFFGDMDVSVLDEKPAGRQPIKTITVPVERIDEVVGG 503 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534 L L+ G + YWICP + E + + + ERF L +HF ++ +IHG+M +K++ M Sbjct: 504 LHRALAAGDRVYWICPLVAESEYVDLAAAAERFEDLQKHFGDAVGLIHGKMPGPEKDAAM 563 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 ++F G ++L++TTV+EVG+DV +A+I++IE+AE FGLAQLHQLRGRVGRG + SSC+L Sbjct: 564 EAFAAGRTRVLVSTTVVEVGVDVPEATIMVIEHAERFGLAQLHQLRGRVGRGSKASSCLL 623 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 LY PL + + RL +++ +EDGF IAEEDL+ R EGE+LG +QSG F +A+ E Sbjct: 624 LYRGPLGQVAKARLEMMRGSEDGFRIAEEDLRLRGEGEVLGTRQSGAAAFRLARLETDGD 683 Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 LLE AR DA+ I+ +DP L S RG+++R+LLYL++ A + I AG Sbjct: 684 LLEAARDDARLIVERDPRLASERGRALRVLLYLFEREAAIRLIGAG 729 >gi|240140977|ref|YP_002965457.1| DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration [Methylobacterium extorquens AM1] gi|240010954|gb|ACS42180.1| DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration [Methylobacterium extorquens AM1] Length = 729 Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust. Identities = 314/706 (44%), Positives = 446/706 (63%), Gaps = 10/706 (1%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 +RPS L+PLFAP GVG K + + K++ R DLLF+ P S + R Sbjct: 28 LRPSLLDPLFAPARGLPGVGPKIAPLIEKLLGS-EERPARVADLLFHLPQSGVARPLCGS 86 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 I + VT+ + H L KR +++L+ DGTG+I+L+FF ++ + G Sbjct: 87 IRDAPTGEPVTLGVTVVAHRPPMLGKR-AFRVLVEDGTGDISLVFFGMPRGRIEKMLPLG 145 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 V+G+I MVHP I + P +E +Y GL+ + +I+ AL Sbjct: 146 SHRYVSGRIDLWDGTRQMVHPSRILDQEGLASLPAVEPIYGATEGLTSRVISRIVHGALD 205 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW------TSPARERLAYDELL 234 RLPVLPEW + L + FP AEA I H P +A SPAR+RLAYDELL Sbjct: 206 RLPVLPEWQDASYLARNRFPPFAEALRIEHRPEEAPPPPVEGQALPASPARKRLAYDELL 265 Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 A Q+AL L+R + +++ G +G + +++ +PF+ T +Q A+++I DM+ + RM Sbjct: 266 ASQLALALVRARQRRKPGRVNAGDGHLKERVEAAMPFALTGAQARAVEEIRADMAAERRM 325 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 LR+LQGDVGSGKT VAL+AMA+AVEAG QA +MAP ILA+QHYE + ++ + Sbjct: 326 LRLLQGDVGSGKTAVALLAMASAVEAGRQAALMAPTEILARQHYERLVPLAGAMRL--RL 383 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 +TG A RR L +A G+ I++GTHALFQ+S+ + L L +VDEQHRFGV QRL L Sbjct: 384 LTGRDRAAERRATLADLAAGEIDIVVGTHALFQESVAFRDLGLAVVDEQHRFGVHQRLAL 443 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 K A +L+MTATPIPRTL LT GD+D+S + EKPAGR+PIKT+ +P+ RIDEV+ Sbjct: 444 GAKGEAVDILVMTATPIPRTLALTFFGDMDVSVLDEKPAGRQPIKTITVPVERIDEVVGG 503 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534 L L+ G + YWICP + E + + + ERF L +HF ++ +IHG+M +K++ M Sbjct: 504 LHRALAAGDRVYWICPLVAESEYVDLAAAAERFEDLQKHFGDAVGLIHGKMPGPEKDAAM 563 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 ++F G ++L++TTV+EVG+DV +A+I++IE+AE FGLAQLHQLRGRVGRG + SSC+L Sbjct: 564 EAFAAGRTRVLVSTTVVEVGVDVPEATIMVIEHAERFGLAQLHQLRGRVGRGSKASSCLL 623 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 LY PL + + RL +++++EDGF IAEEDL+ R EGE+LG +QSG F +A+ E Sbjct: 624 LYRGPLGQVAKARLEMMRSSEDGFRIAEEDLRLRGEGEVLGTRQSGAAAFRLARLETDGD 683 Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 LLE AR DA+ I+ +DP L S RG+++R+LLYL++ A + I AG Sbjct: 684 LLEAARDDARLIVERDPRLQSERGRALRVLLYLFEREAAIRLIGAG 729 >gi|163853558|ref|YP_001641601.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium extorquens PA1] gi|163665163|gb|ABY32530.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens PA1] Length = 729 Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust. Identities = 314/706 (44%), Positives = 445/706 (63%), Gaps = 10/706 (1%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 +RPS L+PLFAP GVG K + + K++ R DLLF+ P S + R Sbjct: 28 LRPSLLDPLFAPARGLPGVGPKIAPLIEKLLGS-EERPARVADLLFHLPQSGVARPLCGS 86 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 I + VT+ + H L KR +++L+ DGTG+I+L+FF ++ + G Sbjct: 87 IRDAPTGEPVTLGVTVVAHRPPMLGKR-AFRVLVEDGTGDISLVFFGMPRGRIEKMLPLG 145 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 V+G+I MVHP I + P +E +Y GL+ + +I+ AL Sbjct: 146 SHRYVSGRIDLWDGTRQMVHPSRILDQEGLASLPAVEPIYGATEGLTSRVISRIVHGALD 205 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW------TSPARERLAYDELL 234 RLPVLPEW + L + FP AEA I H P +A SPAR+RLAYDELL Sbjct: 206 RLPVLPEWQDASYLARNRFPPFAEALRIEHRPEEAPPPPVEGQAPPASPARKRLAYDELL 265 Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 A Q+AL L+R + +++ G +G + +++ +PF+ T +Q A+++I DM+ + RM Sbjct: 266 ASQLALALVRARQRRKPGRVNAGDGHLKERVEAALPFALTGAQARAVEEIRADMAAERRM 325 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 LR+LQGDVGSGKT VAL+AMA+AVEAG QA +MAP ILA+QHYE + ++ + Sbjct: 326 LRLLQGDVGSGKTAVALLAMASAVEAGRQAALMAPTEILARQHYERLVPLAGAMRL--RL 383 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 +TG A RR L +A G+ I++GTHALFQ+S+ + L L +VDEQHRFGV QRL L Sbjct: 384 LTGRDRAAERRATLADLAAGEIDIVVGTHALFQESVAFRDLGLAVVDEQHRFGVHQRLAL 443 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 K A +L+MTATPIPRTL LT GD+D+S + EKPAGR+PIKT+ +P+ RIDEV+ Sbjct: 444 GAKGEAVDILVMTATPIPRTLALTFFGDMDVSVLDEKPAGRQPIKTITVPVERIDEVVGG 503 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534 L L+ G + YWICP + E + + + ERF L +HF ++ +IHG+M +K++ M Sbjct: 504 LHRALAAGDRVYWICPLVAESEYVDLAAAAERFEDLQKHFGDAVGLIHGKMPGPEKDAAM 563 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 ++F G ++L++TTV+EVG+DV +A+I++IE+AE FGLAQLHQLRGRVGRG + SSC+L Sbjct: 564 EAFAAGRTRVLVSTTVVEVGVDVPEATIMVIEHAERFGLAQLHQLRGRVGRGSKASSCLL 623 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 LY PL + + RL +++ +EDGF IAEEDL+ R EGE+LG +QSG F +A+ E Sbjct: 624 LYRGPLGQVAKARLEMMRGSEDGFRIAEEDLRLRGEGEVLGTRQSGAAAFRLARLETDGD 683 Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 LLE AR DA+ I+ +DP L S RG+++R+LLYL++ A + I AG Sbjct: 684 LLEAARDDARLIVERDPRLQSERGRALRVLLYLFEREAAIRLIGAG 729 >gi|84686904|ref|ZP_01014788.1| ATP-dependent DNA helicase RecG [Maritimibacter alkaliphilus HTCC2654] gi|84665101|gb|EAQ11581.1| ATP-dependent DNA helicase RecG [Rhodobacterales bacterium HTCC2654] Length = 696 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 295/700 (42%), Positives = 431/700 (61%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLFA L T G+G K + + + + T+ DLLF P S +DR +R + Sbjct: 4 RPEILFPLFAELETLGGIGPKSAKSFAAL------DITQPRDLLFSLPYSGVDRSFRASV 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 SEI VT+ + +H + RPY++ + D L+FF+ + + G+ Sbjct: 58 SEIRPPATVTVEAEVGRHLPPS-ARNRPYRVEMTDALTTFYLVFFHGNPDWISRNLPTGQ 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+GK+++ M HP +I + P E VY L G++ L + + E LSR Sbjct: 117 RRIVSGKVEEYDGIRQMPHPDHILKPGEADLIPEFEPVYHLAQGVTQKLMFRAVGEVLSR 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 + L EWI+ L ++ +P EA I H P+ D +PAR RLAYDE A Q+ L Sbjct: 177 VQPLIEWIDPGLKAQEHWPDWHEAVRIAHMPQGPDDLSPQAPARRRLAYDEFFAHQLTLA 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R + ++ G G + K+ +PF PT +QE A+ DI DM+ RM R+LQGD Sbjct: 237 LARARMRRGKGRASVGTGILQDKVRAALPFQPTGAQERAVADIAADMAAGQRMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVA +A+ AVEAGGQ V+MAP ILA+QH E ++ + ++VE++TG Sbjct: 297 VGAGKTLVAFLALLVAVEAGGQGVMMAPTEILARQHLESLRPMAETAGVVVELLTGRDKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 RR LE + G H+++GTHA+FQD + Y+ L L +VDEQHRFGV +R++L +K A Sbjct: 357 GERRAKLEALKRGDIHVLVGTHAVFQDDVAYHDLRLAVVDEQHRFGVTERMRLGKKGQAA 416 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L GD+D+S + EKP GR+PI T ++P +R+D+V+ RL+ V + Sbjct: 417 DVLVMTATPIPRSLSLAQYGDMDVSILDEKPPGRQPITTSVLPTSRLDDVVARLRGVAQD 476 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540 G +AYW+CP + E + S + ERF L + ++HG+M +K++ M +F+ G Sbjct: 477 GGQAYWVCPLVGESEVSELIAAEERFKHLRAALGEGVVGLVHGQMPPAEKDAAMAAFQRG 536 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 K+L+ATTVIEVG+DV +A+I++IE AEHFGLAQLHQLRGRVGR + S+C+LLY PL Sbjct: 537 ETKVLVATTVIEVGVDVPNATIMVIERAEHFGLAQLHQLRGRVGRCSKASTCLLLYQSPL 596 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 ++ RL +++ TEDGF IAE DL+ R G+++G QSG+PKF++ E L+ +A+ Sbjct: 597 TETGEKRLGIMRETEDGFRIAEADLEMRGAGDLIGTAQSGLPKFMVGDLEHQAGLMAVAQ 656 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 KDA+ +L DPDLTS RG++ R+LL+L + +EA + I G Sbjct: 657 KDARKLLADDPDLTSTRGEAARVLLWLMRQDEAIRLISVG 696 >gi|126737639|ref|ZP_01753369.1| ATP-dependent DNA helicase RecG [Roseobacter sp. SK209-2-6] gi|126721032|gb|EBA17736.1| ATP-dependent DNA helicase RecG [Roseobacter sp. SK209-2-6] Length = 696 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 302/700 (43%), Positives = 437/700 (62%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLFA T +GVG K + L +I ET DLLF P S +DR R I Sbjct: 4 RPEVLFPLFAAADTLKGVGPKIAQNLQQI-----GLETPR-DLLFLLPYSVLDRRRRSTI 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + I T+ I H + K Y+I + D E L+FF+ ++ L+ EG Sbjct: 58 RGLELPGIATVEVTIGSHRPAR-NKGGAYRINVTDQEEEFQLVFFHGRSRYLEAQCPEGS 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+GK++ MVHP ++ ++ + P E VY L G++ K + AL+R Sbjct: 117 RRLVSGKLELFDGMAQMVHPDHMLPLAEAEDIPEFEPVYPLTHGVTQKTMTKAVQSALTR 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 LP L EWI+ L ++ +PS EA H P+ +D + + R RLAYDEL A Q+ L Sbjct: 177 LPDLSEWIDPALCSREGWPSWREALQQAHVPQGQEDLDPEASPRARLAYDELFAHQVTLA 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R+Q ++ G G + ++L +P+ PT +Q AI++I DM++ RM R+LQGD Sbjct: 237 LARQQERQRKGRASLATGHLQSRVLSALPYRPTGAQARAIEEISADMARDIRMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVA +A+ AVEAGGQ V+MAP GILAQQH E +K ++ +++E++TG Sbjct: 297 VGAGKTLVAFMALLVAVEAGGQGVMMAPTGILAQQHLEGLKPLAEDAGVVLEVLTGRDKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 RRK L+ +A G I++GTHA+FQ + + L L +VDEQHRFGV+QR++L +K Sbjct: 357 TERRKKLDALARGDIQILVGTHAVFQQDVAFKDLRLAVVDEQHRFGVRQRMELAEKGQGA 416 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L GD+++S + EKP GRKP+KT ++ R+ EV+E L+ + E Sbjct: 417 DVLVMTATPIPRSLALAQYGDMEVSVLDEKPPGRKPVKTAVVATERMQEVVEHLRGAIEE 476 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540 G++ YW+CP + E + + + ERFN L + ++HG+M +K++ M++F +G Sbjct: 477 GRQCYWVCPLVGESEVMDLTAAEERFNHLRAALGEGQVGLVHGQMPPAEKDAAMEAFVSG 536 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 K+L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG S+C+LLY PPL Sbjct: 537 KTKVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGSAQSTCLLLYQPPL 596 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S+ RL VL+ TEDGF I+E DL+ R G+++G QSG+PKF IA E L+ +A+ Sbjct: 597 SEGGRRRLEVLRETEDGFRISETDLQMRGAGDVIGTAQSGLPKFRIADLEKQAPLMALAQ 656 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L +DPDLTS RGQ++R+LL+L + ++A + I G Sbjct: 657 SDARALLAKDPDLTSERGQAVRVLLWLMKQDQAIRLISVG 696 >gi|170748080|ref|YP_001754340.1| ATP-dependent DNA helicase RecG [Methylobacterium radiotolerans JCM 2831] gi|170654602|gb|ACB23657.1| DEAD/DEAH box helicase domain protein [Methylobacterium radiotolerans JCM 2831] Length = 750 Score = 595 bits (1534), Expect = e-168, Method: Compositional matrix adjust. Identities = 312/708 (44%), Positives = 449/708 (63%), Gaps = 11/708 (1%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 +RPS L+PLFAP G+G K + + +++ E R +DLLF+ P + R Sbjct: 46 LRPSILDPLFAPARALPGIGPKMAPLIERLLGTPE-REARVVDLLFHLPQGGVARKLMGS 104 Query: 61 ISEISEERIVTITGYISQHSSFQL-QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 ISE VTI + H Q+ RRP+++L+ D +G+I+L+FF ++ + Sbjct: 105 ISEAPTGEPVTIGVTVVAHRPAQVGAGRRPHRVLVEDASGDISLVFFGMPRARVEKMLPL 164 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G +TG+I MVHP I + P +E VY GL+ K+ V AL Sbjct: 165 GAHRYITGRIDLWDGTRQMVHPSRIVDEAGLAELPAVEPVYGATEGLTSRAINKLAVVAL 224 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR----KAKDF---EWTSPARERLAYDE 232 RLP+LPEW + L++ P+ A+A + H P KA+D +P+R+RLAYDE Sbjct: 225 DRLPILPEWQDPAWLERNRLPAFADALRLEHRPEEAPPKAEDPLQPPPATPSRKRLAYDE 284 Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292 LLA Q+AL L+R + +++ G +G ++ ++ +PF+ T +Q A+ +I D++ Sbjct: 285 LLASQLALALLRARQRRKAGRVNAGDGALSARLQAALPFALTGAQARAVAEIRADLAAPR 344 Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352 RMLR+LQGDVGSGKT VAL+AMA+AVEAG QA +MAP ILA+QH+E +K ++ Sbjct: 345 RMLRLLQGDVGSGKTAVALLAMASAVEAGRQAALMAPTEILARQHFERLKPLAGPLRL-- 402 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 ++TG A R+ L +A G+ I++GTHALFQ+++ + L L +VDEQHRFGV QRL Sbjct: 403 RLMTGRDRAAERKSTLADLAAGEIDILVGTHALFQEAVAFRDLGLAVVDEQHRFGVHQRL 462 Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 L K A L+MTATPIPRTL LT GD+D+S + EKPAGR+PI+T+ +P RIDEV+ Sbjct: 463 ALGAKGEAVDFLVMTATPIPRTLALTFFGDMDVSILDEKPAGRQPIRTITLPTERIDEVV 522 Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532 L ++ G++ YWICP +EE + + + ERF+ L +HF ++ +IHG+M +K++ Sbjct: 523 AGLARAIAGGERVYWICPLVEESEFVDLAAAAERFDDLRKHFGDAVGLIHGKMPGPEKDA 582 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 M F G KLL++TTV+EVG+DV +A+I++IE+AE FGLAQLHQLRGRVGRG + SSC Sbjct: 583 AMARFAAGETKLLVSTTVVEVGVDVPEATIMVIEHAERFGLAQLHQLRGRVGRGSKASSC 642 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +LLY PL + S RL +++ +EDGF IAE DLK R EGE+LG +QSG+ F +A+ E Sbjct: 643 LLLYRGPLGQVSRARLEMMRASEDGFRIAEADLKLRGEGEVLGTRQSGLAAFRLARLESD 702 Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 +LLE AR DA+ I+ +DP L S RGQ++R+LLYL++ A + I AG Sbjct: 703 AALLEAARDDARLIVERDPGLRSPRGQALRVLLYLFEREAAIRLIGAG 750 >gi|254467243|ref|ZP_05080654.1| DEAD/DEAH box helicase domain protein [Rhodobacterales bacterium Y4I] gi|206688151|gb|EDZ48633.1| DEAD/DEAH box helicase domain protein [Rhodobacterales bacterium Y4I] Length = 696 Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust. Identities = 297/700 (42%), Positives = 438/700 (62%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLFA T +GVG K + L++I + R DLLF P S +DR R I Sbjct: 4 RPEILFPLFAGAETLQGVGPKTAQNLTQI----DIETPR--DLLFSLPYSVVDRRRRDTI 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + ++T+ I +H + + Y++ + D E L+FF+ ++ L+ EG Sbjct: 58 RGVDLPAVLTVEVTIGRHRPAR-SRGGAYRVHVEDAETEFQLVFFHGRSRYLEAQLPEGA 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+GK++ MVHP ++ + P E VYSL G+S K ALSR Sbjct: 117 RRVVSGKLELFDGIAQMVHPDHMLPVEEAHEIPEFEPVYSLTHGVSQKTMYKAAQSALSR 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 +P L EWI+ + ++++P+ +A H P+ D SPAR RLAYDEL + Q+ L Sbjct: 177 MPHLEEWIDPAQMLRENWPAWHDALQSAHAPQGPDDLSPQSPARARLAYDELFSHQLTLA 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R+ +K GI + G++ ++L+ +P+ PT +Q AI++I DM+ RM R+LQGD Sbjct: 237 LARQTERKSRGIESHATGRLQSRVLKALPYRPTNAQARAIEEISADMASPKRMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVA +A+ AVEAGGQ V+MAP GILAQQH E + ++ +++EI+TG Sbjct: 297 VGAGKTLVAFMALLVAVEAGGQGVMMAPTGILAQQHMEGLAPLAEDAGVVIEILTGRDKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 A R+ L + G I++GTHA+FQ +++ L L IVDEQHRFGV+QR++L +K Sbjct: 357 AERKAKLAALKRGDIQILVGTHAVFQQDVEFRDLRLAIVDEQHRFGVRQRMELAEKGKGA 416 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L GD+D+S + EKP GRKP+KT +I R+ EV++ L+ ++E Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPVKTAVISTERMQEVVDHLRKAIAE 476 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA-IIHGRMSDIDKESVMDSFKNG 540 G++ YW+CP ++E + S+ + ERF L IA ++HG+M +K++ M +F+ G Sbjct: 477 GRQCYWVCPLVDESELSDLTAAEERFKHLRAVLGEGIAGLVHGQMPPAEKDAAMAAFQEG 536 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 K+L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG S+C+L+Y PPL Sbjct: 537 KTKVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGSAESTCLLMYQPPL 596 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 ++ RL VL+ TEDGF I+E DL+ R G+++G QSG+P+F IA E L+E+A+ Sbjct: 597 TEGGRKRLEVLRETEDGFRISETDLQMRGAGDMIGTAQSGLPRFRIADLERQAGLMEVAQ 656 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L DP L S RG++ R+LL+L + ++A + I G Sbjct: 657 SDARALLAADPKLESARGKAARVLLWLMKQDQAIRLISVG 696 >gi|158423349|ref|YP_001524641.1| helicase [Azorhizobium caulinodans ORS 571] gi|158330238|dbj|BAF87723.1| helicase [Azorhizobium caulinodans ORS 571] Length = 698 Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust. Identities = 307/701 (43%), Positives = 440/701 (62%), Gaps = 4/701 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP+ L+PLFAPL+T G+G K +++ N R IDLLF+ PS IDR RP Sbjct: 1 MRPALLDPLFAPLTTLPGIGPKMVRPFGRLLGREN---PRVIDLLFHMPSGLIDRRARPT 57 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 I E E VT+ + HS+ +R P++ ++D +G++T++ F + ++ + G Sbjct: 58 IFEAEPETDVTLEVRVDGHSAPPPGRRAPHRTFVSDASGDLTVVHFNIERARIERLLPVG 117 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 + G++ M HP I + P +E Y L GL+ ++ + AL+ Sbjct: 118 ETRWLCGRVTLYDGMRQMTHPDRILDAAGLAKLPPVEPKYPLTEGLAGGHVRRAMEAALA 177 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 R+P LPE I +LL++ +PS EA IH P D T A ERLA+DEL A Q+ L Sbjct: 178 RVPELPEAIPPELLERGDWPSFREALKRIHQPETPVDGLPTGRAWERLAFDELYAHQVTL 237 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L+R+ K G P +G++A IL+ +PF T +QE A+ I D++ RMLR+LQG Sbjct: 238 ALVRQTQVKAGGRPTRGDGRLAAAILKALPFRLTSAQEEALAAIRADLAADTRMLRLLQG 297 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VAL+A AAA+EAG QA +MAP ILA+QH E I I V ++TG Sbjct: 298 DVGSGKTVVALLAAAAAIEAGRQAALMAPTEILARQHLETIAPLAAAAGIEVAVLTGREK 357 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 R LE +A G+ +++GTHAL QD + + L L IVDEQHRFGV+QRL ++K A Sbjct: 358 GRTRAGILEGLASGRIGLVVGTHALIQDDVAFADLALAIVDEQHRFGVEQRLTFSRKGAA 417 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 +LLMTATPIPRTLVLT GD+D S++ EKP GRKP+ T + + R+DEV+ L L Sbjct: 418 VDMLLMTATPIPRTLVLTLFGDMDSSELREKPPGRKPVDTRSVSLERLDEVVGALGRQLR 477 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539 +G +AYWICP +EE S+ + ER L + F ++ ++HGRMS DK++ M F + Sbjct: 478 DGAQAYWICPLVEESDTSDLAAATERAAHLKKVFGEKAVELVHGRMSGADKDAAMARFAS 537 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G ++L+ATTV+EVG++V +A++++IE+AE FGLAQLHQLRGRVGRGE+ S+C+LL+ P Sbjct: 538 GEARILVATTVVEVGVNVPNATLMVIEHAERFGLAQLHQLRGRVGRGEKASTCLLLFRGP 597 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 LS+ S RL++L+ +EDGF IAEEDL+ R EG++LG KQSG+P F +A+ E+H +L+ A Sbjct: 598 LSETSKARLAILRESEDGFRIAEEDLRLRGEGDVLGTKQSGLPGFKVARMEVHGALVSQA 657 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 R A ++ +PDL G+ +R LLY+ + + A + + AG Sbjct: 658 RDAAARLVPGNPDLEGPEGERVRTLLYVQERDAAVRLLSAG 698 >gi|86138406|ref|ZP_01056980.1| ATP-dependent DNA helicase RecG [Roseobacter sp. MED193] gi|85824931|gb|EAQ45132.1| ATP-dependent DNA helicase RecG [Roseobacter sp. MED193] Length = 696 Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust. Identities = 297/700 (42%), Positives = 437/700 (62%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLFA T +GVG K + L++I ET DL F P S +DR R I Sbjct: 4 RPEILFPLFAGAETLKGVGPKTAQSLAQI-----GLETPR-DLAFSLPHSILDRRRRDTI 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + I T+ + +H + + Y+I + D E L+FF+ ++ L+ EG Sbjct: 58 KGLDLPAIATVEVEVGRHLPAR-NRGGAYRINVADQEVEFQLVFFHGRSRYLEAQCPEGS 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+GK++ MVHP ++ ++ + P E VY L G++ K + AL R Sbjct: 117 RRLVSGKVELFDGVAQMVHPDHMLPLAEAEDIPEYEPVYPLTHGVTQKTMTKAALSALER 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 LP L EWI+ + +++ +P+ EA N H+P+ +D +P R RLAYDEL A Q+ L Sbjct: 177 LPELAEWIDPEQARREGWPAWKEALNAAHHPQSLEDLSPEAPIRTRLAYDELFAHQLTLA 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R+ +K GI G++ +L +P+ PT +QE AI++I +DM++ RM R+LQGD Sbjct: 237 LARQAERKSPGIVSEATGRLQAPVLAALPYRPTGAQERAIREISEDMARDRRMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A+ AVEAGGQ V+MAP GILAQQH+E ++ + +++E++TG Sbjct: 297 VGSGKTLVAFMALLVAVEAGGQGVMMAPTGILAQQHFEGLRPLAEQAGVVLELLTGRDKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 A RR L + G I++GTHA+FQ + + +L L IVDEQHRFGV+QR++L +K Sbjct: 357 AERRAKLAALEAGDIQILVGTHAVFQQDVVFRRLHLAIVDEQHRFGVRQRMELAEKGKGA 416 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L GD+D+S + EKP GRKP+KT ++ R++EV+ L+ + E Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPVKTAVLSTERMEEVVNHLRRAIGE 476 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540 G++ YW+CP + E + + + ERF L + ++HG+M +K++ M +F+ G Sbjct: 477 GRQCYWVCPLVGESEVMDLIAAEERFKHLRATLGEGVVGLVHGQMPPAEKDAAMAAFQKG 536 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 K+L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG S+C+L+Y PPL Sbjct: 537 ETKVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGSAESTCLLMYQPPL 596 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S+ RL VL+ +EDGF I+E DL+ R G+++G QSG+P+F IA E SL+ +A+ Sbjct: 597 SEGGRRRLEVLRESEDGFKISETDLQMRGAGDVIGTAQSGLPRFHIADLERQASLMAVAQ 656 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +LT DP L S RGQ+ R+LL+L + ++A + I G Sbjct: 657 SDARSLLTMDPGLQSDRGQAARVLLWLMKQDQAIRLISVG 696 >gi|254477381|ref|ZP_05090767.1| DEAD/DEAH box helicase domain protein [Ruegeria sp. R11] gi|214031624|gb|EEB72459.1| DEAD/DEAH box helicase domain protein [Ruegeria sp. R11] Length = 696 Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust. Identities = 301/700 (43%), Positives = 433/700 (61%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLFA + T +GVG K + LS+I A E+ DLL+ P S +DR R I Sbjct: 4 RPEILFPLFAGVETLQGVGPKTAQHLSQI-----AIESPR-DLLYSLPYSVVDRRRRTTI 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + + T+ I H + K Y+I + D E L+FF+ ++ L+ EG Sbjct: 58 QGLDFPSVATVEVTIGTHRPAR-NKGGAYRINVTDAETEFQLVFFHGRSRYLEAQLPEGS 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+GK++ MVHP ++ + + P E VY L G+S K AL R Sbjct: 117 RRVVSGKLELFDGLAQMVHPDHMVALADADDIPDFEPVYHLTHGVSQKTMFKAAQSALQR 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 LP LPEWI+ ++K+ +P+ +A H+P D +PAR RLAYDEL + Q+ L Sbjct: 177 LPDLPEWIDPSQMRKEEWPAWQDALTKSHSPEGPDDLMAEAPARARLAYDELFSHQLTLA 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R+Q + G G++ ++L +P+ PT +Q AI++I DM++ RM R+LQGD Sbjct: 237 LARQQDRALPGRVSLATGQLQSRVLSALPYRPTGAQARAIEEISADMARPERMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVA +A+ AVEAGGQ V+MAP ILA+QH E ++ ++ +++EI+TG Sbjct: 297 VGAGKTLVAFMALLVAVEAGGQGVMMAPTEILARQHLEALRPLAEDAGVVLEILTGRDKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 R+ +A G HI++GTHALFQ + + L L IVDEQHRFGV+QR++L +K Sbjct: 357 RERKAKCAALARGDIHILVGTHALFQPDVAFRDLRLAIVDEQHRFGVRQRMELAEKGKGA 416 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L LT GD+++S + EKP GRKPIKT II R+DEV+ L+ + E Sbjct: 417 DVLVMTATPIPRSLALTQYGDMEVSVLDEKPPGRKPIKTAIISTERMDEVVSHLRRAIDE 476 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540 G++ YW+CP +EE + + + ERF L + ++HG+M +K++ M +F+ G Sbjct: 477 GRQCYWVCPLVEESEVMDLTAAEERFKRLRAVLGDGVVGLVHGQMPPAEKDAAMAAFQAG 536 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 K+L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG S+C+LLY PL Sbjct: 537 ETKVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGSADSTCLLLYQAPL 596 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 SK RL +L+ TEDGF I+E DL+ R G+++G QSG+P+F IA E L+ +A+ Sbjct: 597 SKGGQKRLEILRETEDGFRISETDLEMRGAGDVIGTAQSGLPRFRIADLERQAGLMSVAQ 656 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L DPDL+S RGQ+ R+LL+L + ++A + I G Sbjct: 657 SDARALLASDPDLSSPRGQAARVLLWLMKQDQAIRLISVG 696 >gi|148255541|ref|YP_001240126.1| ATP-dependent DNA helicase RecG [Bradyrhizobium sp. BTAi1] gi|146407714|gb|ABQ36220.1| ATP-dependent DNA helicase RecG [Bradyrhizobium sp. BTAi1] Length = 700 Score = 588 bits (1517), Expect = e-166, Method: Compositional matrix adjust. Identities = 317/703 (45%), Positives = 446/703 (63%), Gaps = 6/703 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP+ LNPLFAP++T GVG K L +++C + R +DLL + P+S IDR RPK Sbjct: 1 MRPAILNPLFAPVTTLSGVGPKQDKLLRYLLSC--SETPRLVDLLLHLPASVIDRRNRPK 58 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 + + +VT+ + +H + R PY + +D TG++ L FF K + ++ + G Sbjct: 59 VRDAEVGTVVTLEVTVDRHRPSR-NARAPYLVYASDETGDVVLTFFRPKGDYIEKMLPVG 117 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 K V+G ++ +VHPH I + I+ VY L GL++ ++ I AL+ Sbjct: 118 AKRYVSGTVQMYDGVPQIVHPHPILDEAAFAKLSGIDPVYPLTEGLALGSLRRAISAALT 177 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 +LP LPEWI ++L + +FP + EA +H P++ D +P RLA+DELLAGQ+AL Sbjct: 178 KLPDLPEWISPEVLNRCNFPPLKEALTRVHGPQELTDILPENPFWSRLAFDELLAGQLAL 237 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L+R Q ++ G +G + +KI+ +P++ T SQ A+ I D+ + RMLR+LQG Sbjct: 238 ALVRAQLRRPAGNRHAGDGHLRRKIIDALPYALTNSQAGALDAIATDLEKPVRMLRLLQG 297 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VAL+A AA EAG QA +MAP ILA+QH + I + + V I+TG Sbjct: 298 DVGSGKTVVALLAAAAVAEAGKQAALMAPTEILARQHAKTIAPLAERAGMNVAILTGREK 357 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 RR L R+ G+ ++IGTHAL QD + + L L IVDEQHRFGV++RL LT K A Sbjct: 358 GKERRDILGRLEAGEIDLLIGTHALIQDDVIFKSLALAIVDEQHRFGVRERLALTSKGEA 417 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 VL+++ATPIPRTLVLT GD+DIS++ EKPAGR+PI T ++ R+ EVI+ + L Sbjct: 418 VDVLVLSATPIPRTLVLTYFGDMDISELREKPAGRQPIDTRVVADTRLGEVIDAVGRALQ 477 Query: 481 EGKKAYWICPQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537 GK YWICP +EE + + + +R SL E F + ++HG+M +K+ VM F Sbjct: 478 AGKLVYWICPLVEESEAEGIDHLTNATDRCESLRERFGDKVGLVHGKMKGSEKDEVMGRF 537 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 +LL+ATTV+EVG+DV A+I++IENAE FGLAQLHQLRGR+GRG E S+CILLYH Sbjct: 538 AAHELRLLVATTVVEVGVDVPAATIMVIENAERFGLAQLHQLRGRIGRGSEASTCILLYH 597 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PL + S RL+V++ T DGF IAEEDLK R EG++LGI+QSG+P + IA+PE+H L+ Sbjct: 598 EPLGQMSKARLAVIRETTDGFRIAEEDLKLRGEGDVLGIRQSGLPGYRIARPEVHAQLIT 657 Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 AR +A IL +DP L R ++R LLYLY+ +EA + AG Sbjct: 658 QARDEALRILKEDPKLKGPRSDALRCLLYLYERDEAIPLLTAG 700 >gi|154248335|ref|YP_001419293.1| DEAD/DEAH box helicase domain-containing protein [Xanthobacter autotrophicus Py2] gi|154162420|gb|ABS69636.1| DEAD/DEAH box helicase domain protein [Xanthobacter autotrophicus Py2] Length = 697 Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust. Identities = 296/700 (42%), Positives = 422/700 (60%), Gaps = 3/700 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP L PLFAPL++ G+G K +++ R +DLLF+ PS F+DR RP Sbjct: 1 MRPDALLPLFAPLTSLPGIGPKLVRPYGRLLG---REMPRVLDLLFHMPSGFVDRRARPT 57 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 I+E E VT+ + H S R P++ ++D +G++ ++ F L+++ G Sbjct: 58 IAEALPETDVTLEVRVDGHQSPPPGSRAPHRTFVSDASGDMVVVHFKMDPARLEHMLPVG 117 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 + + G+I M HP + + P +E VY L GL+ ++ I AL Sbjct: 118 QTRWLCGRISLYDGMRQMTHPDRVLDAAGLARLPAVEQVYPLVEGLAAGHVRRAIEAALQ 177 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 R+P LPEWI +DLL ++ +P+ EA +H P + RLA+DEL A QI L Sbjct: 178 RVPELPEWIPQDLLAERGWPAFREALVRVHRPANPHEATPAGGPWRRLAFDELFAHQITL 237 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L+R Q +K G +G I+ ++L +PF T QE A++ I D++ RMLR+LQG Sbjct: 238 ALLRAQEEKAGGRSTVGDGHISAQLLSALPFRLTAGQEQAVEAIRADLAADTRMLRLLQG 297 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VAL+A A EAG Q +MAP ILA+QH+E I + V ++TG Sbjct: 298 DVGSGKTVVALMAAATVAEAGRQTALMAPTEILARQHHETIAPLADAAGLSVSVLTGREK 357 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 R L + HG+ ++IGTHAL QD + + L LV+VDEQHRFGV+QRL L +K A Sbjct: 358 GRARTAVLTELQHGRTDMVIGTHALIQDDVIFRDLALVVVDEQHRFGVEQRLTLARKGEA 417 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 +L+MTATPIPRTLVLT GD+D S++ EKP GR+ I T IP++R+DEV+ LS Sbjct: 418 VDMLVMTATPIPRTLVLTLFGDMDSSELREKPPGRQAIDTRAIPLDRLDEVVAAAGRALS 477 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540 G +AYWICP +EE S+ + ERF L F + ++HGRMS K+ M F +G Sbjct: 478 SGARAYWICPLVEETDTSDLAAATERFEVLKSIFGDKVGLVHGRMSGAAKDEAMARFASG 537 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +LL+ATTVIEVG++V +A++++IE+AE FGLAQLHQLRGRVGRG++ S C+LLY PL Sbjct: 538 ETRLLVATTVIEVGVNVPEATVMVIEHAERFGLAQLHQLRGRVGRGDKPSVCLLLYRAPL 597 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + + RL++L+ ++DGF +AEEDL+ R EG++LG +QSGMP F A+ E H +E AR Sbjct: 598 GETAKARLAILRESQDGFRLAEEDLRLRGEGDVLGTRQSGMPGFRTARLEFHSGEVEAAR 657 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 A + DPDL + + + LL+L + + A + + AG Sbjct: 658 DAAAQRVKADPDLAAPQSGPLHTLLHLAERDAAMRLLSAG 697 >gi|75675707|ref|YP_318128.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255] gi|74420577|gb|ABA04776.1| ATP-dependent DNA helicase RecG [Nitrobacter winogradskyi Nb-255] Length = 699 Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust. Identities = 296/702 (42%), Positives = 438/702 (62%), Gaps = 5/702 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANET-RFIDLLFYHPSSFIDRHYRP 59 MRP+ LNPLF P+++ GVG K ++ +ET R +DLLF+ P+S +DR RP Sbjct: 1 MRPALLNPLFVPVTSLSGVGPKQDRLFRHLLA---RDETPRLVDLLFHLPASVVDRRARP 57 Query: 60 KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118 KI + IVT+ + +H + R P+ + +D TG + L +F + ++ + Sbjct: 58 KIRDAVPGTIVTLEVSVDRHRPAPPGRSRAPHLVYASDETGSVVLTYFRAQPSYVEKLLP 117 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 G K V+G ++ + +VHP + + I+ VY L GL+ ++ I +A Sbjct: 118 AGSKRYVSGTVQMFDGTLQIVHPDRVVDEAGLAELSGIDPVYPLTQGLAPGALRRAIAQA 177 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L LPVLPEW + +L++ FP +A+A +H P + D P RLA+DELLAGQ+ Sbjct: 178 LQNLPVLPEWTDPKILRRCGFPPLAQALRRVHVPLELTDTLPEGPFWSRLAFDELLAGQL 237 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 AL L+R + ++ G +G + +I+ +P++ T SQ+ A+ I++D+ Q RMLR+L Sbjct: 238 ALTLVRARLRRPAGNRHAGDGHLRNRIIDALPYALTASQQQAVAAIIEDLRQPVRMLRLL 297 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKT+VAL+A A E+G Q +MAP +LA+QH + I + + V I+TG Sbjct: 298 QGDVGSGKTVVALLAACAVAESGKQTALMAPTEVLARQHIKTIAPLAERAGLRVAILTGR 357 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 RR+ R+A G +++GTHAL QD + + L L +VDEQHRFGV++RL LT K Sbjct: 358 EKGRERREITARLAEGDIDLLVGTHALIQDEVTFKSLALAVVDEQHRFGVRERLALTTKG 417 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 A VL+++ATPIPRTLVLT GD+D+S++ +KPAGR+PI T + R+ EVI+ + Sbjct: 418 EAVDVLVLSATPIPRTLVLTYFGDMDVSELRDKPAGRQPIDTRAVSDGRLTEVIDAVGRA 477 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 + GK AYWICP +EE + +R+ SL F + ++HG+M +K+ VM F Sbjct: 478 VKAGKLAYWICPLVEESDAVDLSDAEQRYQSLKARFGDRVGLVHGKMRGPEKDRVMAQFA 537 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G LL+ATTV+EVG+DV A+I++IENAE FGLAQLHQLRGR+GRG E S+C+LLY Sbjct: 538 AGEINLLVATTVVEVGVDVPAATIMVIENAERFGLAQLHQLRGRIGRGSEPSTCLLLYRE 597 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PL + S RL V++ T DGF IAEEDL+ R EG++LG +QSG+P + +A+ ++H L+ + Sbjct: 598 PLGEMSAARLRVIRETTDGFRIAEEDLRLRGEGDVLGTRQSGLPGYRVARSDVHAQLITL 657 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 AR +A IL Q+P+LT G+++R LLYL++ +EA + AG Sbjct: 658 ARDEALRILKQNPNLTGSHGEALRCLLYLFERDEALPLLGAG 699 >gi|149203842|ref|ZP_01880811.1| ATP-dependent DNA helicase RecG [Roseovarius sp. TM1035] gi|149142959|gb|EDM31001.1| ATP-dependent DNA helicase RecG [Roseovarius sp. TM1035] Length = 696 Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust. Identities = 294/700 (42%), Positives = 433/700 (61%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLFA L T G+G K + L+ + TR DL+ P S +DR R + Sbjct: 4 RPEILFPLFAGLETLEGIGPKTAQALAAL------EITRPRDLILTLPHSGVDRRRRATV 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 IVT+ + QH +K PY++++ D L+FF+ + E L+ + G Sbjct: 58 QGAEMPGIVTVEVTVGQHRPPS-RKGGPYRVVVEDAATSFHLVFFHARDEYLRKMLPTGA 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+GK + +VHP ++ + + P E VY L G++ + K + AL R Sbjct: 117 RRIVSGKAELFDGIAQIVHPDHMLPLEEASDIPDFEPVYPLTAGVTQRVMTKGVHSALMR 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 LP L EWI+ + +P A A H P++A+D PARERLAYDEL+A Q+ L Sbjct: 177 LPDLTEWIDPVQKAQAGWPDWAAAVRAAHRPQEARDLSPAHPARERLAYDELMAHQMTLA 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R + ++ G G + ++L +P++ T +Q AI +I DM+ RM R+LQGD Sbjct: 237 LARSKLRRAKGRATVGTGVLQARVLMALPYALTGAQTRAIAEIAADMAAPQRMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVA A+ AVEAGGQ V+MAP ILA+QH + ++ ++ +++EI+TG Sbjct: 297 VGAGKTLVAFKALLIAVEAGGQGVMMAPTEILARQHLQGLRPLAESAGVVLEILTGRDKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 RR L +A G I++GTHA+FQ +++ L L IVDEQHRFGV+QRL+L +K Sbjct: 357 TERRAKLAALARGDIQILVGTHAVFQKDVEFSDLRLAIVDEQHRFGVRQRLELGKKGAQA 416 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L GD+D+S + EKP GR+PIKT +I + RIDEV++ L+ L+E Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRQPIKTALISMGRIDEVVDHLRRALAE 476 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540 G++AYW+CP +EE + + S ERF L + ++HG+M DK++ M +F+ G Sbjct: 477 GRQAYWVCPLVEESEVVDLSSAEERFKRLRAALGEGVVGLVHGQMPPEDKDAAMAAFQRG 536 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L++TTVIEVG+DV +ASI++IE AE FGLAQLHQLRGRVGRG+ S+C+L+Y PL Sbjct: 537 DTSVLVSTTVIEVGVDVPNASIMVIERAESFGLAQLHQLRGRVGRGQAASTCLLMYQAPL 596 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S++ RL+ +++TEDGF I+E DL+ R G+++G QSG+P+F IA E +L+ +A+ Sbjct: 597 SESGERRLTTMRDTEDGFRISEVDLEMRGAGDLIGTAQSGLPRFRIADLESQSALMAVAQ 656 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L DPDL S RG++ R+LL+L + ++A + I G Sbjct: 657 SDARKLLHDDPDLVSERGRAARVLLWLMEQDQAIRLISVG 696 >gi|254487099|ref|ZP_05100304.1| ATP-dependent DNA helicase RecG [Roseobacter sp. GAI101] gi|214043968|gb|EEB84606.1| ATP-dependent DNA helicase RecG [Roseobacter sp. GAI101] Length = 696 Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust. Identities = 296/700 (42%), Positives = 425/700 (60%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLFA L T GVG K + +++ R DLLF P S IDR + + Sbjct: 4 RPEPLFPLFAGLETLEGVGPKTAQHFAQL----GIQAPR--DLLFTLPYSGIDRRLQASL 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + VT+ + H + K Y+I + D L+FF+ + + K EG Sbjct: 58 KDSVLPATVTVAVTVGPHRA-PANKGGAYRIHVEDSGTAFQLVFFHARGDYWKRQLPEGS 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+G+++ MVHP + P E VY L +G++ L K L+R Sbjct: 117 RRIVSGRVELFDRMAQMVHPDFAVAEEDADQIPTFEPVYPLTSGITQKLMYKATRATLAR 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 +P EWI+ + +P A A H+P D +P+RERLAYDEL+A Q+ L Sbjct: 177 VPPFDEWIDPSQKSQSGWPDFATAVAAAHDPENQSDLSAAAPSRERLAYDELMAHQLTLA 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R + +++ G +G++ ++L +P+ PT +Q AI +I DM+ RM R+LQGD Sbjct: 237 LARARDRRKKGRASVGDGRLQGRVLAALPYKPTGAQTRAISEIAHDMASAQRMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVA +A+ AAVEAGGQ V+MAP ILA+QH E +K + +++EI+TG Sbjct: 297 VGAGKTLVAFMALLAAVEAGGQGVLMAPTEILARQHLEGLKPLAEQAGVVLEILTGRDKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 A RR L + G I++GTHA+FQ + + L L +VDEQHRFGV+QRL+L QK Sbjct: 357 AERRSKLAALEKGDIQILVGTHAVFQADVSFGDLRLAVVDEQHRFGVRQRLELGQKGKLA 416 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L GD+D+S + EKP GRKPI+T ++ +RIDEVI RL+ + E Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPIRTALVSTDRIDEVIGRLRAAIDE 476 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI-AIIHGRMSDIDKESVMDSFKNG 540 G++ YW+CP +EE + S+ + RF L I ++HG+M +K++ M +F+ G Sbjct: 477 GRQCYWVCPLVEESEVSDLIAADARFKRLRAVLGEGIVGLVHGQMPPAEKDAAMRAFQRG 536 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 K+L+ATTVIEVG+DV +ASI++IE AE FGLAQLHQLRGRVGRG+ S+C+L+Y PL Sbjct: 537 ETKVLVATTVIEVGVDVPNASIMVIERAESFGLAQLHQLRGRVGRGQAASTCLLMYQAPL 596 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 ++ RL VL+ TEDGF+IAE DLK R G+++G QSG+P+F +A E L++IA+ Sbjct: 597 TETGRQRLEVLRETEDGFVIAETDLKMRGTGDLIGTAQSGVPRFRVADLERQAGLMQIAQ 656 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L DP+L S RG++ R+LL+L + +EA + I G Sbjct: 657 SDARKLLADDPELVSPRGKAARMLLWLMRQDEAIRLISVG 696 >gi|182678303|ref|YP_001832449.1| ATP-dependent DNA helicase RecG [Beijerinckia indica subsp. indica ATCC 9039] gi|182634186|gb|ACB94960.1| ATP-dependent DNA helicase RecG [Beijerinckia indica subsp. indica ATCC 9039] Length = 731 Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust. Identities = 313/705 (44%), Positives = 452/705 (64%), Gaps = 5/705 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIIN-CGNANETRFIDLLFYHPSSFIDRHYRP 59 MRPS L+PLFA + +GVG K +L L K + N+ R IDLLF+ PS IDR RP Sbjct: 27 MRPSLLDPLFASAESLQGVGPKTALLLGKAVGIAANSGGARVIDLLFHLPSGTIDRRERP 86 Query: 60 KISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 KI+E +R+VT+ + +H + + PY++L+ D TG++ L+FF + ++ Sbjct: 87 KIAEAPLDRVVTLEVTVVEHRPPPARSKAPYRVLVEDETGDVLLVFFLANPQWIERSLPR 146 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G K V+GK++ MVHP + N P +E +Y GLS K I A Sbjct: 147 GEKRWVSGKLELWDGYRQMVHPDRVLDAQGLANLPPVEPIYPTTEGLSQKQIAKAIEAAF 206 Query: 180 S----RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235 + R P LPEW + L++ FPS ++A +H+P + SP R RLA DELLA Sbjct: 207 AYFTARGPKLPEWHDLSLVKLPVFPSFSDALKALHHPAEPNAIGLESPGRLRLALDELLA 266 Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LMR + ++ G +G++ KIL +P+ PT QE A+ +I D++ RML Sbjct: 267 SQLALALMRGKRRRMAGRIAQGDGRLTAKILAGLPYRPTPCQEKALAEIKADLAAPRRML 326 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R+LQGDVGSGKTLVAL+AMA VEAG QA +MAP ILA+QHY + +NT + + ++ Sbjct: 327 RLLQGDVGSGKTLVALLAMAGMVEAGRQAALMAPTEILARQHYANLSALCENTGLRLALL 386 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 TG R K L +A G+ I+IGTHALFQ+ + ++ L L +VDEQHRFGV QRL L+ Sbjct: 387 TGRDKGTSRAKRLAALAAGEIDILIGTHALFQEDVTFHDLGLAVVDEQHRFGVHQRLALS 446 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 K A +L+MTATPIPRTLVLT GD+++S + EKP GR+ I T +PI RIDEV++ L Sbjct: 447 DKGEAVDILVMTATPIPRTLVLTFFGDMEVSVLREKPPGRQKIDTRALPIERIDEVVDGL 506 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 +L++G +AYW+CP +EE + + +V RF L F + + ++HG+M +K++ M Sbjct: 507 HRLLAKGGRAYWVCPLVEESELLDVAAVEARFEDLTSIFGTKVGLLHGKMKAAEKDAAMA 566 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +F +G ++L+ATTVIEVG+DV +A++++IE+AE FGLAQLHQLRGRVGRG SSC+LL Sbjct: 567 AFASGETRILVATTVIEVGVDVPEATVMVIEHAERFGLAQLHQLRGRVGRGPGQSSCLLL 626 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PL + + R+++++ +EDGF IAEEDL+ R EG++LG KQSG+P F IA +H L Sbjct: 627 YKGPLGEIAKARIAIMRESEDGFRIAEEDLRLRGEGDVLGTKQSGLPGFRIADLSVHAQL 686 Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 L +AR +A+ ++ +P L +G+++R+LL L++ EA + + AG Sbjct: 687 LTLARAEARQMVEDNPKLEGPQGEALRLLLNLFERREAIRLLDAG 731 >gi|146277207|ref|YP_001167366.1| ATP-dependent DNA helicase RecG [Rhodobacter sphaeroides ATCC 17025] gi|145555448|gb|ABP70061.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 695 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 298/700 (42%), Positives = 424/700 (60%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLFA L T GVG K + + + TR DLLF P S +DR R I Sbjct: 3 RPEILFPLFADLETLDGVGPKTAKAFAGL------GVTRPKDLLFLLPHSAVDRSRRRSI 56 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 E+ T+ I H + +K PY+I + D E TL+FF+ + + L + +G Sbjct: 57 REVMPPVTATVEVEIGAHYPPR-RKGGPYRIAVRDAEAEFTLVFFHARGDYLTRLLPQGE 115 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+G+I+ MVHP ++ + + P E VY L GL+ L K AL R Sbjct: 116 RRLVSGRIEFFDGMAQMVHPDHVLRPEEAADLPACEPVYPLAAGLTQKLVAKAAAAALER 175 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 LP L EWI+ L ++ +P A A H P D T+ AR RLAYDEL A Q+ L Sbjct: 176 LPELAEWIDPALKAREGWPDWATAVRASHAPAAPADVTPTAAARRRLAYDELFAHQLTLT 235 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R ++ G G + ++ L ++PF+PT +Q A+ +I DM+ RM R+LQGD Sbjct: 236 LARATRRRGKGQASVGTGALQRRALDSVPFAPTGAQTRALSEIAADMAAPLRMNRLLQGD 295 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVA +A+A AVEAGGQ V+MAP ILA+QH + + I +E++TG Sbjct: 296 VGAGKTLVAFLALAIAVEAGGQGVMMAPTEILARQHLSSLTPLAEAAGIRLELLTGRDKG 355 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 A R L +A G+ +++GTHA+FQ + ++ L L IVDEQHRFGV QR++L K A Sbjct: 356 AERASKLAALASGEIGVLVGTHAVFQKDVLFHDLRLAIVDEQHRFGVAQRMELGAKGAAA 415 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L GD+D+S + EKP GR P+KT ++ R+DEV+ L ++E Sbjct: 416 DVLVMTATPIPRSLALAGYGDMDVSVLDEKPPGRSPVKTALVSCERMDEVVASLAHAVAE 475 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540 G++AYW+CP +E+ + ++ S RF L + ++HG+M+ DK++ M F G Sbjct: 476 GRQAYWVCPLVEDSEAVDYASAEARFQHLRAALGEGVVGLVHGQMAPADKDAAMARFVAG 535 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG S+C+L+Y PPL Sbjct: 536 ETRVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGAAQSTCLLMYQPPL 595 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 +++ RL++L+ TEDGF IAEEDL R G+++G QSG+P+F IA E +L+E+A+ Sbjct: 596 AESGQRRLTILRETEDGFRIAEEDLAIRGAGDLIGTAQSGLPRFRIADLERQAALMELAQ 655 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L DP L S RGQ+ R+LL+L + A + + G Sbjct: 656 SDARKLLNDDPALASPRGQAARLLLWLLDQDRAIRLLSVG 695 >gi|220926924|ref|YP_002502226.1| ATP-dependent DNA helicase RecG [Methylobacterium nodulans ORS 2060] gi|219951531|gb|ACL61923.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans ORS 2060] Length = 704 Score = 585 bits (1509), Expect = e-165, Method: Compositional matrix adjust. Identities = 302/703 (42%), Positives = 439/703 (62%), Gaps = 4/703 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 +RPS L+PLFAP + G G K ++ + K++ + R +DLLF+ P + + Sbjct: 3 LRPSLLDPLFAPATVLPGAGPKMAVLVDKLLGTPE-HPARVVDLLFHLPHGGVAHQLKGS 61 Query: 61 ISEISEERIVTITGYISQH-SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I+ VT+ + H Q+ RRPY++L+ D TG+I+L+FF ++ + Sbjct: 62 IAAAPTGEPVTLCVTVVAHRPPQQVGGRRPYRVLVEDATGDISLVFFNMPRARIEKMLPA 121 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G + V+G+I+ MVHP I P +E +Y GL+ + K+ AL Sbjct: 122 GARRYVSGRIELWDGFRQMVHPARILDEKGFSELPSVEPLYGATEGLTSRVIGKLAQGAL 181 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSP--ARERLAYDELLAGQ 237 RLP LPEW + L ++S+PS AEA H P K E R RLAYDELLA Q Sbjct: 182 ERLPDLPEWQDPAWLARQSWPSFAEALRAEHRPDKPPPAEGEPAPATRRRLAYDELLASQ 241 Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 +AL L+R + ++ G +G+++++I +PF T +Q A+ +I DM RMLR+ Sbjct: 242 LALALVRSRMRRPPGRINAGDGELSRRIEAALPFRLTGAQVRALAEIRGDMRSDRRMLRL 301 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 LQGDVGSGKT VA++AMA+A+EAG QA +MAP ILA+QH E ++ + + + ++TG Sbjct: 302 LQGDVGSGKTAVAMLAMASAIEAGRQAALMAPTEILARQHAERLRPLAEAAGLPLVLMTG 361 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 A RR L +A G I IGTHALFQ+ + + L L +VDEQHRFGV QRL L K Sbjct: 362 RDRNAERRATLAGLAEGSIPIAIGTHALFQEEVAFRDLGLAVVDEQHRFGVHQRLALGAK 421 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 A +L+MTATPIPRTL LT GD+++S + EKPAGR+PI T ++ R+DEV+ L+ Sbjct: 422 GAAVDILVMTATPIPRTLALTCFGDMEVSILDEKPAGRQPIATRLVSTERLDEVVAGLER 481 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537 L+ G++ YWICP + E + ++ + ERF L +HF ++ ++HG+M +K+ M+ F Sbjct: 482 ALARGERVYWICPLVAESEFTDLAAAEERFADLRQHFGEAVGLVHGKMPGREKDEAMERF 541 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 GT ++L++TTV+EVG+DV +A+I++IE+AE FGLAQLHQLRGRVGRG S+C+LLY Sbjct: 542 AAGTTRILVSTTVVEVGVDVPEATIMVIEHAERFGLAQLHQLRGRVGRGSGASTCLLLYR 601 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PL + + RL +++ TEDGF IAEEDL+ R EGE+LG +QSG+ F +A+PE LL Sbjct: 602 GPLGQVARARLEMMRETEDGFRIAEEDLRLRGEGEVLGTRQSGLAAFRLARPEADGDLLL 661 Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 AR DA+ I+ +DP L S RG+++R LLYL++ + A + + AG Sbjct: 662 AARDDARLIVERDPALKSERGRALRTLLYLFERDAAVKLLGAG 704 >gi|149915268|ref|ZP_01903796.1| ATP-dependent DNA helicase RecG [Roseobacter sp. AzwK-3b] gi|149810989|gb|EDM70828.1| ATP-dependent DNA helicase RecG [Roseobacter sp. AzwK-3b] Length = 696 Score = 585 bits (1509), Expect = e-165, Method: Compositional matrix adjust. Identities = 295/700 (42%), Positives = 427/700 (61%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLFA L T GVG K + N G + DL+F P S +DR R + Sbjct: 4 RPEALFPLFAGLETLEGVGPK------TVQNLGGLEIEKPRDLVFTLPWSGVDRRKRATV 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 +VT+ + QH + ++ Y+I + D L+FF+ + E L+ + G Sbjct: 58 QGAELPGVVTVEVVVGQHRAPS-RRGGAYRITVEDAATAFQLVFFHARDEYLRRILPTGA 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+GK++ MVHP +I + P E VY L G++ + +K AL+R Sbjct: 117 RKIVSGKVELFDGVAQMVHPDHILDVDEAEEIPDFEPVYPLTAGVTQKMMRKAAHSALTR 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 LP L EWI+ + +P AEA H P++A D PARERLAYDE +A Q+ L Sbjct: 177 LPDLAEWIDPAQKAQAGWPDWAEAVRRAHGPQEAADLSAADPARERLAYDEFMAHQLTLA 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R + ++ G G + K+L +P++ T +Q AI +I DM+ + RM R+LQGD Sbjct: 237 LARSRLRRAKGRATMGTGALQAKVLEALPYALTGAQTRAIAEIAGDMASETRMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVA A+ AVEAGGQ V+MAP ILA+QH + ++ + +++EI+TG Sbjct: 297 VGAGKTLVAFKALLIAVEAGGQGVMMAPTEILARQHLQGLQPLAEAAGVVLEILTGRDKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 A RR LE + G I++GTHA+FQ + + L L IVDEQHRFGV+QRL+L +K Sbjct: 357 AERRAKLEALQRGDIQILVGTHAVFQKDVDFADLRLAIVDEQHRFGVRQRLELGRKGAQA 416 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L GD+D+S + EKP GRKPI T ++ I RIDEV++ L+ ++E Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPITTALVNIGRIDEVVDHLRRAVAE 476 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540 G++AYW+CP ++E + + S ERF L + ++HG+M K+S M +F+ G Sbjct: 477 GRQAYWVCPLVDESEAVDLSSAEERFKRLRAALGEGVVGLVHGQMPPEQKDSAMAAFQRG 536 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L++TTVIEVG+DV +ASI++IE AEHFGLAQLHQLRGRVGRG+ S+C+L+Y PL Sbjct: 537 ETSVLVSTTVIEVGVDVPNASIMVIERAEHFGLAQLHQLRGRVGRGQAASTCLLMYQAPL 596 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S+ RL+ +++TEDGF IAE DL+ R G+++G QSG+P+F IA E +L+ +A+ Sbjct: 597 SEGGERRLTTMRDTEDGFRIAEVDLEMRGAGDLIGTAQSGLPRFRIADLEAQAALMAVAQ 656 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L DP L RG++ R+LL+L + ++A + I G Sbjct: 657 SDARKLLVDDPALEGDRGRAARVLLWLMEQDQAIRLISVG 696 >gi|89054994|ref|YP_510445.1| ATP-dependent DNA helicase RecG [Jannaschia sp. CCS1] gi|88864543|gb|ABD55420.1| DEAD/DEAH box helicase-like protein [Jannaschia sp. CCS1] Length = 700 Score = 585 bits (1509), Expect = e-165, Method: Compositional matrix adjust. Identities = 290/700 (41%), Positives = 434/700 (62%), Gaps = 9/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLFA L T G+G K + N + DL+F P+ +DR R I Sbjct: 9 RPEILFPLFAGLETLDGIGPKTAK------NYAGLDVETPRDLIFTLPAGGLDRTRRASI 62 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 +++ T+ I H + Q R PY+I + D L+FF+ + + L+ G Sbjct: 63 RDVALPGPATVEVTIGTH--IKPQGRGPYRIEVEDAKTSFHLVFFHARGDYLERAHPTGA 120 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + ++GK++ M HP ++ + + P E VY L GL+ K + AL++ Sbjct: 121 RRVISGKVELYDGIAQMAHPDHMLPPEEAASIPEYEPVYPLSQGLTQRGVHKAVQSALTK 180 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 + L EWI+ + +++++P+ A+A +H P+ + D + RERLAYDE A Q+ L Sbjct: 181 IEYLGEWIDLETAKERNWPAWADAIQAVHAPQSSSDISRAALPRERLAYDEFFAHQLTLA 240 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R +++ G+ +G++ K+L +P++PT +Q IK+I DM+ +RM R+LQGD Sbjct: 241 LARATRRRKPGLSSTGDGRLRAKVLTALPYTPTGAQTRTIKEIADDMAAPHRMSRLLQGD 300 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVAL+A+ AVEAGGQAV+MAP ILA QHY +K + ++ EI+TG Sbjct: 301 VGAGKTLVALMALLVAVEAGGQAVMMAPTSILAGQHYLNLKPLADHAGVVCEILTGADKG 360 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 R L + G HI++GTHA+FQD + + L L +VDEQHRFGV++R++L+QK A Sbjct: 361 RERDAKLNALKRGDIHILVGTHAVFQDDVAFDDLRLAVVDEQHRFGVRERVRLSQKGEAA 420 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 +L+MTATPIPRTL L GD+D+S + EKP GR P+KT +I R+DEV++ ++ L E Sbjct: 421 DILVMTATPIPRTLSLAQYGDMDLSVLDEKPPGRTPVKTALISTARLDEVVDHMRRALDE 480 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540 G++AYW+CP +EE + + + ERF L F +A+IHGRM +K+++M +FK G Sbjct: 481 GRQAYWVCPLVEESEVYDATAAEERFKMLRAAFGEGKVALIHGRMKPKEKDAIMAAFKAG 540 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L+ATTVIEVG+DV +ASI++IE AE++GLAQLHQLRGRVGRG S+C+L+Y PL Sbjct: 541 ETRVLVATTVIEVGVDVPNASIMVIEQAENYGLAQLHQLRGRVGRGAADSTCLLMYRAPL 600 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + RL V++ TEDGF I+EEDL R G+++G QSG+P+F +A E +L+ +A+ Sbjct: 601 GDTATRRLQVMRETEDGFRISEEDLAIRGAGDLIGTAQSGLPRFRVADMESQAALMALAQ 660 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +LT DP L RGQS R+LL+L + ++A + + G Sbjct: 661 TDARALLTLDPALEGARGQSARVLLWLMEQDKAIRLLNVG 700 >gi|163731898|ref|ZP_02139345.1| ATP-dependent DNA helicase RecG, putative [Roseobacter litoralis Och 149] gi|161395352|gb|EDQ19674.1| ATP-dependent DNA helicase RecG, putative [Roseobacter litoralis Och 149] Length = 696 Score = 585 bits (1508), Expect = e-165, Method: Compositional matrix adjust. Identities = 295/700 (42%), Positives = 434/700 (62%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L LF+ L T GVG K + + + + R DLLF P + +DR R I Sbjct: 4 RPEALFGLFSSLETLDGVGPKTAANFAGL----GVHAPR--DLLFTLPINVLDRQRRESI 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + I T+T I H + K Y+I ++D L+FF+ + + EG Sbjct: 58 EGLEYPAITTVTVTIGAHRPPR-TKGAAYRITVSDAETSFQLVFFHARGDYWARALPEGS 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+GK+++ MVHP YI S+ P E VY L +G++ + K L Sbjct: 117 RRVVSGKLERFDGLPQMVHPDYIVPESEIDAIPSFEPVYPLTSGITQKVMFKASQSVLKL 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 +P + EWI+ ++K +P++ +A + H P+ + D T+ ARERLAYDE+LA Q+ L Sbjct: 177 VPEMAEWIDPGQMRKAEWPNVVQALALAHRPQSSADIAITAAARERLAYDEMLAHQLTLA 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R +++ G +G + Q+++ ++P+ T +Q A+ D+ +M + RM R+LQGD Sbjct: 237 LARLTERQKKGHATRGDGVLQQRLITSLPYPLTGAQLRAVSDVNTNMGEAVRMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A+ AVE GGQ V+MAP ILA+QH + +K + + +EI+TG Sbjct: 297 VGSGKTLVAFLALLRAVEGGGQGVLMAPTEILARQHLQSLKPLAEKVGVRLEILTGRDTG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 R K L+ +A+G +++GTHA+FQ + + L L ++DEQHRFGVQQRL L QK A Sbjct: 357 KERNKKLDDLANGDIGVLVGTHAVFQKGVTFDDLRLAVIDEQHRFGVQQRLALGQKGAAV 416 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L GD+D+S + EKP GR PIKT ++ + R+DEV+ RL+ V+ E Sbjct: 417 DVLVMTATPIPRSLALAQFGDMDVSILDEKPPGRMPIKTALVSVERMDEVVSRLRAVVEE 476 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540 G++ YW+CP +EE + + + ER+ L F + ++HG+M +K++ M F+ G Sbjct: 477 GRQCYWVCPLVEESEVVDLTAAEERYKHLRAAFGEGVVGLVHGQMPASEKDAAMARFEAG 536 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 KLL+ATTVIEVG++V +A+I++IE AE FGLAQLHQLRGRVGRGE S+C+L+Y PPL Sbjct: 537 ETKLLVATTVIEVGVNVPNATIMVIERAEFFGLAQLHQLRGRVGRGEAASTCLLMYQPPL 596 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 SK+ RL VL+ TEDGF+IAE DLK R G+++G QSG+P+F IA E L+ IA+ Sbjct: 597 SKSGQHRLEVLRQTEDGFVIAETDLKMRGAGDVIGTAQSGLPRFWIADLERQAGLMAIAQ 656 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L +DP L+S RGQ+ R+LL+L + +E+ + I G Sbjct: 657 SDARKLLAEDPGLSSPRGQAARMLLWLLRKDESIRLISVG 696 >gi|114768814|ref|ZP_01446440.1| ATP-dependent DNA helicase RecG [alpha proteobacterium HTCC2255] gi|114549731|gb|EAU52612.1| ATP-dependent DNA helicase RecG [alpha proteobacterium HTCC2255] Length = 696 Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust. Identities = 298/700 (42%), Positives = 444/700 (63%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLF L+ F G+G K ++ LSK+ N N R DLLF P S + R+ + Sbjct: 4 RPEILFPLFGQLTQFTGIGPKIAINLSKL----NINSPR--DLLFTLPHSLLMRNKIETV 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + I+ I + +H Q QK RPYKI ++D L+FF+ + L ++F G Sbjct: 58 LDAINNDIIIIEIIVDEHLENQ-QKNRPYKINVSDAKASFQLVFFHARKNWLWDLFPIGE 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 K+ ++GK++ + + HP Y+F + P +E +YSL G++ K +AL+ Sbjct: 117 KVLISGKLEYFDGKAQITHPDYVFKPGNEAQIPTLEPIYSLSAGVTQKTLSKATRQALNL 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 LP++ EWI ++ K ++P+ A H P+ + SP R RLAYDE+LA Q+ L Sbjct: 177 LPMINEWISPSIINKFAWPTWVNALKNAHEPKNINHITFDSPNRLRLAYDEMLAHQLTLA 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 + R+ ++K GI +++K++ IPF T +Q+ I++I DMS+ RM R+LQGD Sbjct: 237 IARENYRKSKGIKNIGNKSLSKKVMEFIPFELTNAQKRVIEEIRNDMSEPFRMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTL+A + M A+EAGGQAVIMAP IL +QH + +K + I++E ++G Sbjct: 297 VGSGKTLIAFLCMVTAIEAGGQAVIMAPTEILTKQHEDTLKPLAEKAGIVLESLSGRDKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 R+ +E IA G+ II+GTHA+FQ+SI+Y L L I+DEQHRFGV+QR+ L K A Sbjct: 357 KERKSKIEAIATGKIQIIVGTHAVFQESIKYNDLRLAIIDEQHRFGVRQRMDLGNKGDAV 416 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 +L+MTATPIPR+L LT+ GD+++S++ EKP GRKPI TV++ +RI EVI+RLKV + Sbjct: 417 DILIMTATPIPRSLALTNYGDMELSEVDEKPIGRKPINTVMVSSSRILEVIDRLKVAIET 476 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNG 540 G + YW+CP +EE + S +R N+L + ++I ++HG+MS +K+ VM F + Sbjct: 477 GNQIYWVCPLVEESEFLELTSAEDRANNLSKVLGKNNIGLVHGKMSGEEKDRVMSDFVDN 536 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 K+L+ATTVIEVG+DV +A+II+IE++E FGL+QLHQLRGRVGRG + S+C+++Y PPL Sbjct: 537 KIKILVATTVIEVGVDVPNATIIVIEHSERFGLSQLHQLRGRVGRGADASTCLMIYEPPL 596 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 K + RL ++ T DGF IA DLK R G++LG+ QSG+PKF +A E L+E+A+ Sbjct: 597 GKTAKKRLEAIRETNDGFKIANVDLKLRGAGDVLGVSQSGLPKFRMADIETQSHLMEMAK 656 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 +A+ I+T DP L S +G+++R LLY+ +E + + G Sbjct: 657 DEARLIMTNDPSLNSQQGKALRNLLYIMGADEYIKLLSVG 696 >gi|260433790|ref|ZP_05787761.1| ATP-dependent DNA helicase RecG [Silicibacter lacuscaerulensis ITI-1157] gi|260417618|gb|EEX10877.1| ATP-dependent DNA helicase RecG [Silicibacter lacuscaerulensis ITI-1157] Length = 696 Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust. Identities = 296/700 (42%), Positives = 438/700 (62%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLFA L T GVG K + L ++ ET DLLF P + IDR R I Sbjct: 4 RPEQLYPLFAGLETLDGVGPKTARLLGQM-----GLETPR-DLLFALPYAVIDRRRRDTI 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + +T+ + H + + Y++ + D + L+FF+ + + LK + EG Sbjct: 58 RGVDLPATLTVEVTVGAHRPPR-NRGGAYRVFVQDSQSDFQLVFFHARGDYLKKILPEGA 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + ++G+++ MVHP ++ Q + P E VY L G++ K AL+R Sbjct: 117 RRVISGRLELFDGVAQMVHPDHMVPVDQAGSIPEFEPVYHLTQGVTQKTAYKAAQSALAR 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 +P L EW + L+ ++ +P EA H+PR A D +PARERLAYDEL A Q+ L Sbjct: 177 VPDLAEWADPALVDRRGWPGWPEAIRAAHSPRGADDVAPFAPARERLAYDELFAHQLTLA 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R++ +K GI G + K+L+N+P+ PT++Q+ AI++I DM+ RM R+LQGD Sbjct: 237 LARQRERKSRGIVSVGTGALQSKVLKNLPYQPTQAQQRAIREIAADMASDARMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVA +A+ AVEAGGQ V+MAP ILA+QH E ++ ++ +++EI+TG Sbjct: 297 VGAGKTLVAFMALLIAVEAGGQGVMMAPTEILARQHLEGLRPLAEDAGVVLEILTGRDKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 A RR L + G I++GTHA+FQ + + L L IVDEQHRFGV+QR++L++K Sbjct: 357 AERRAKLAALKAGDIQILVGTHAVFQSDVAFKDLRLAIVDEQHRFGVRQRMELSRKGQGA 416 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L GD+D+S + EKP GRKP+KT I+ R+DEV++ L+ + + Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPVKTAIVSTQRMDEVVDHLRRAIDD 476 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540 G++ YW+CP ++E + S+ + ERF L + ++HG+M +K++ M +F+ G Sbjct: 477 GRQCYWVCPLVDESEVSDLTAAEERFKHLRAQLGEGVVGLVHGQMPPSEKDAAMAAFQAG 536 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 K+L+ATTVIEVG++V +A+I++IE AE FGLAQLHQLRGRVGRGE S+C+L+Y PPL Sbjct: 537 RTKVLVATTVIEVGVNVPNATIMVIERAEIFGLAQLHQLRGRVGRGEGASTCLLMYQPPL 596 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S+ RL L+ TEDGF IA+ DL+ R G+++G QSG+P+F IA E L+E+A+ Sbjct: 597 SEGGRRRLEALRETEDGFRIAQTDLEMRGAGDLIGTAQSGLPRFQIADLERQAGLMEVAQ 656 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L DP+L S RG++ R LL+L + ++A + I G Sbjct: 657 TDARALLATDPELKSERGRAARGLLWLMKQDQAIRLISVG 696 >gi|146340717|ref|YP_001205765.1| DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration [Bradyrhizobium sp. ORS278] gi|146193523|emb|CAL77539.1| DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration [Bradyrhizobium sp. ORS278] Length = 700 Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust. Identities = 318/703 (45%), Positives = 448/703 (63%), Gaps = 6/703 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP+ LNPLFAP++T GVG K L +++C + R +DLL + P+S IDR RPK Sbjct: 1 MRPAILNPLFAPVTTLSGVGPKQDKLLRYLLSC--SETPRLVDLLLHLPASVIDRRNRPK 58 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 + ++ +VT+ + +H + R PY + +D TG++ L FF K + ++ + G Sbjct: 59 VRDVEVGTVVTLEVTVDRHRPSR-NARAPYLVYASDDTGDVVLTFFRPKGDYIEKMLPVG 117 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 K V+G ++ +VHP I + I+ VY L GL++ ++ I AL+ Sbjct: 118 AKRYVSGTVQMYDGIPQIVHPDRILDEAGFAKLSGIDPVYPLTEGLALGSLRRAIAAALT 177 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 +LP LPEWI ++L + +FPS+ EA +H P++ D +P RLA+DELLAGQ+AL Sbjct: 178 KLPELPEWISPEVLSRCNFPSLREALTRVHVPQELTDILPENPFWSRLAFDELLAGQLAL 237 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L+R Q ++ G +G++ ++I+ +P++ T SQ AI+ I D+ + RMLR+LQG Sbjct: 238 ALVRAQLRRPAGNRHAGDGRLRRRIIDALPYALTNSQAQAIEAIAADLEKPVRMLRLLQG 297 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VAL+A AA EAG QA +MAP ILA+QH + I + + V I+TG Sbjct: 298 DVGSGKTVVALLAAAAVAEAGKQAALMAPTEILARQHAKTIAPLAERAGMSVAILTGREK 357 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 RR L R+ G+ ++IGTHAL QD + + L L IVDEQHRFGV++RL LT K A Sbjct: 358 VKERRDILARLEAGEIDVLIGTHALIQDDVMFKSLALAIVDEQHRFGVRERLALTSKGEA 417 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 VL+++ATPIPRTLVLT GD+DIS++ EKPAGR+PI T + R EVI+ + L Sbjct: 418 VDVLVLSATPIPRTLVLTYFGDMDISELREKPAGRQPIDTRAVADTRRTEVIDAVGRALD 477 Query: 481 EGKKAYWICPQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537 GK YWICP +EE + + + +R+ SL E F + ++HG+M +K+ VM+ F Sbjct: 478 AGKLVYWICPLVEESEAEGIDHLTNATDRYESLRERFGERVGLVHGKMKGSEKDDVMNRF 537 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 +LL+ATTV+EVG+DV ASI++IENAE FGLAQLHQLRGR+GRG E S+CILLYH Sbjct: 538 AAHELRLLVATTVVEVGVDVPAASIMVIENAERFGLAQLHQLRGRIGRGSEASTCILLYH 597 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PL + S RL+V++ T DGF IAEEDLK R EG++LGI+QSG+P + IA+PE+H L+ Sbjct: 598 EPLGQMSKARLAVIRETTDGFRIAEEDLKLRGEGDVLGIRQSGLPGYRIARPEVHAQLIT 657 Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 AR +A IL DP L R ++R LLYLY+ +EA + AG Sbjct: 658 QARDEALRILKDDPKLKGPRSDALRCLLYLYERDEAIPLLTAG 700 >gi|91977091|ref|YP_569750.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5] gi|91683547|gb|ABE39849.1| ATP-dependent DNA helicase RecG [Rhodopseudomonas palustris BisB5] Length = 727 Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust. Identities = 310/701 (44%), Positives = 441/701 (62%), Gaps = 3/701 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP+ LNPLFA ++T GVG K ++ G + R +DLL + P S IDR RPK Sbjct: 29 MRPALLNPLFASITTLPGVGPKQDKLFRYLL--GRSETPRLVDLLLHLPVSVIDRRSRPK 86 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I + +VT+ ++ +H + R PY + +D TG++ L FF K + ++ + Sbjct: 87 IRDAEPGTVVTLEVHVDRHRPPPPGRSRAPYLVYASDDTGDVILTFFRAKADYIEKLLPI 146 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G K ++G + + +VHP + + P I+ VY L GL++ ++ +AL Sbjct: 147 GEKRYISGTGQLYDGTLQIVHPDRVVDEAGFAKLPKIDPVYPLTEGLAIGSLRRAEAQAL 206 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 ++LP +PEWI ++L++ FPS+A+A N +H P + D P RLAYDELLAGQ+A Sbjct: 207 TKLPAMPEWISPEVLRRCRFPSLADALNRVHVPVEPTDILPDGPYWSRLAYDELLAGQLA 266 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L+R Q ++ G +G++ KI+ +P+S T SQ+ A I +D+ Q RMLR+LQ Sbjct: 267 LALVRAQLRRPAGTRNAGDGRLRHKIIDALPYSLTASQQEAAAAIAEDLRQPVRMLRLLQ 326 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT+VAL+A AA EAG QA +MAP ILA+QH + I + + V I+TG Sbjct: 327 GDVGSGKTVVALLAAAAVTEAGKQAALMAPTEILARQHIKTIAPLAERAGLSVAILTGRE 386 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 RR L R+A G+ ++GTHAL QD + + L L +VDEQHRFGV++RL LT K Sbjct: 387 KGKERRDLLARLAAGEIDFLVGTHALIQDDVVFKSLALAVVDEQHRFGVRERLALTSKGD 446 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 VL+++ATPIPRTLVLT GD+D+S++ EKPAGR+PI T + R+ EVI+ + + Sbjct: 447 TVDVLVLSATPIPRTLVLTYFGDMDVSELREKPAGRQPIDTRALSDGRLPEVIDAVGRAV 506 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 + GK+ YWICP +EE + +RF SL + F + ++HGRM DK+ VM F + Sbjct: 507 TAGKRVYWICPLVEESENVRLTDAEQRFESLQQRFGDKVGLVHGRMRGADKDRVMAQFAS 566 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G +L+ATTV+EVG+DV A+I++IENAE FGLAQLHQLRGRVGRG E S+C+LLY P Sbjct: 567 GEISVLVATTVVEVGVDVPAATIMVIENAERFGLAQLHQLRGRVGRGSEASTCLLLYREP 626 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 L + S RL V++ T DGF IAEEDLK R EG++LG +QSG+P + IA+ ++H L+ A Sbjct: 627 LGEMSAARLRVIRETTDGFRIAEEDLKLRGEGDVLGTRQSGLPGYRIARSDVHGQLITQA 686 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 R +A I+ +P L G+++R LLYLY+ +EA I AG Sbjct: 687 RDEALRIMKDNPKLEGASGEALRCLLYLYERDEALPLIGAG 727 >gi|254510885|ref|ZP_05122952.1| DEAD/DEAH box helicase domain protein [Rhodobacteraceae bacterium KLH11] gi|221534596|gb|EEE37584.1| DEAD/DEAH box helicase domain protein [Rhodobacteraceae bacterium KLH11] Length = 696 Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust. Identities = 294/700 (42%), Positives = 433/700 (61%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLFA L T GVG K + L ++ R D+LF P + IDR R I Sbjct: 4 RPEQLFPLFAGLETLDGVGPKTAQLLGQL----GIESPR--DVLFALPYAVIDRRRRDSI 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 +T+ I H + K Y+I + D + L+FF+ + + LK + +G Sbjct: 58 QGADFPTTLTVEVTIGTHRPAR-NKGGAYRIHVEDSQTDFQLVFFHARGDYLKKLLPQGA 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+GK++ MVHP ++ P E VY L G++ K AL+R Sbjct: 117 RRVVSGKLELFDGMAQMVHPDHMVAPENAGELPEFEPVYHLTQGVTQKTAYKAAQSALAR 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 +P L EW + + ++ +P A A H+P+ A D + ARERLAYDEL A Q+ L Sbjct: 177 VPELAEWADPAQVARQGWPGWASAMRAAHHPQGADDVAPFALARERLAYDELFAHQLTLA 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R++ +K GI G + ++L ++P+ PT +Q A+++I DM+ + RM R+LQGD Sbjct: 237 LARQRERKARGIVSVGTGTLQSRVLASLPYRPTGAQARAVEEISADMASETRMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVA +A+ AVEAGGQ V+MAP ILA+QH + ++ + +++EI+TG Sbjct: 297 VGAGKTLVAFMALLIAVEAGGQGVMMAPTEILARQHLDGLRPLAEEAGVVLEILTGRDKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 A RR L + G I++GTHA+FQ+ +++ L L IVDEQHRFGV+QR++L++K Sbjct: 357 AERRAKLAALKQGDIQILVGTHAVFQEDVEFKALRLAIVDEQHRFGVRQRMELSEKGQRA 416 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L GD+D+S + EKP GRKPI+T I+ R++EV+ L+ + Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPIRTAIVSTQRMEEVVTHLRNAIDA 476 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540 GK+ YW+CP ++E + S+ + ERF L + ++HG+M +DK++ M +F+ G Sbjct: 477 GKQCYWVCPLVDESEVSDLTAAEERFKRLRALLGDDVVGLVHGQMPPVDKDAAMAAFQAG 536 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 K+L+ATTVIEVG+++ +A+I++IE AE FGLAQLHQLRGRVGRGE+ S+C+L+Y PPL Sbjct: 537 RTKVLVATTVIEVGVNIPNATIMVIERAEIFGLAQLHQLRGRVGRGEDASTCLLMYQPPL 596 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S+ RL VL+ TEDGF IAE DL+ R G+++G QSG+PKF IA E L+ +A+ Sbjct: 597 SEGGRKRLEVLRETEDGFRIAETDLQMRGAGDLIGTAQSGLPKFRIADLERQAGLMAVAQ 656 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L+ DP LTS RGQ+ R+LL+L + ++A + I G Sbjct: 657 SDARTLLSADPKLTSDRGQAARVLLWLMKQDQAIRLISVG 696 >gi|85702770|ref|ZP_01033874.1| ATP-dependent DNA helicase RecG [Roseovarius sp. 217] gi|85671698|gb|EAQ26555.1| ATP-dependent DNA helicase RecG [Roseovarius sp. 217] Length = 696 Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust. Identities = 293/700 (41%), Positives = 429/700 (61%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLFA L T G+G K + L+ + TR DL+ P S +DR R + Sbjct: 4 RPEILFPLFAGLETLEGIGPKTAQSLAAL------EITRPRDLILTLPHSAVDRRRRATV 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 IVT+ + QH + +K PY++++ D L+FF+ + + L+ + G Sbjct: 58 QGADLPGIVTVEVTVGQHRAPS-RKGGPYRVVVEDAATSFHLIFFHARDDYLRKMLPTGA 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+GK + MVHP ++ + P E VY L G++ + K AL R Sbjct: 117 RRIVSGKAELFDGIAQMVHPDHMLPVEEAGEIPDFEPVYPLTAGVTQRVMAKGAHSALMR 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 LP L EWI+ + +P +A H P +A+D P RERLAYDEL+A Q+ L Sbjct: 177 LPELAEWIDPVQKAQAGWPDWVDAIRSAHAPDEARDLSPAHPTRERLAYDELMAHQMTLA 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R + ++ G G + K+L +P++ T +Q AI +I DM+ RM R+LQGD Sbjct: 237 LARSKLRRAKGRETIGTGTLQAKVLAALPYALTGAQTRAIAEIAADMAAPQRMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVA A+ AVEAGGQ V+MAP ILA+QH + ++ ++ +++EI+TG Sbjct: 297 VGAGKTLVAFKALLIAVEAGGQGVMMAPTEILARQHLQGLRPLAESAGVVLEILTGRDKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 A RR L + G I++GTHA+FQ +++ L L IVDEQHRFGV+QRL+L +K Sbjct: 357 AERRAKLAALKRGDIQILVGTHAVFQKDVEFADLRLAIVDEQHRFGVRQRLELGKKGAQA 416 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L GD+D+S + EKP GRKPIKT ++ + RIDEV++ L+ ++E Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPIKTALVSMGRIDEVVDHLRRAIAE 476 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI-AIIHGRMSDIDKESVMDSFKNG 540 G++AYW+CP +EE + + S ERF L I ++HG+M DK++ M +F+ G Sbjct: 477 GRQAYWVCPLVEESEVVDLSSAEERFKRLRAALGEGIVGLVHGQMPPEDKDAAMAAFQRG 536 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L++TTVIEVG+DV +ASI++IE AE FGLAQLHQLRGRVGRG+ S+C+L+Y PL Sbjct: 537 ETSVLVSTTVIEVGVDVPNASIMVIERAESFGLAQLHQLRGRVGRGQAASTCLLMYQAPL 596 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S+ RL+ +++TEDGF I+E DL+ R G+++G QSG+P+F IA E +L+ +A+ Sbjct: 597 SEGGERRLTTMRDTEDGFRISEVDLEMRGAGDLIGTAQSGLPRFRIADLESQSALMAVAQ 656 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L DPDL S RG++ R+LL+L + ++A + I G Sbjct: 657 SDARKLLHDDPDLVSDRGRAARVLLWLMEQDQAIRLISVG 696 >gi|255263174|ref|ZP_05342516.1| ATP-dependent DNA helicase RecG [Thalassiobium sp. R2A62] gi|255105509|gb|EET48183.1| ATP-dependent DNA helicase RecG [Thalassiobium sp. R2A62] Length = 696 Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust. Identities = 292/700 (41%), Positives = 438/700 (62%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLFA L + GVG K +L ++ + R DLLF P S IDR R + Sbjct: 4 RPEILFPLFAELKSLEGVGPKTALNYQQM----HVETPR--DLLFTLPHSGIDRRVRDTV 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + +++VT+ I H + QK RPY++ ++D L+FF+ + + ++ + EG Sbjct: 58 DGVIGQQVVTVEVQIDGHQPPR-QKGRPYRVFVSDAQISFQLVFFHAREDYVRRMLPEGG 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+GK++ N I MVHP+Y+ S+ + P E VY L G++ K ALSR Sbjct: 117 RRIVSGKVESFDNLIQMVHPNYMLPVSEAGDIPQFEPVYPLTAGVTQKGIYKAAQSALSR 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 +P + EW++ LL ++ +P+ A +H P+ D PAR RLAYDEL+A Q+ L Sbjct: 177 VPQVDEWVDGALLAREGWPAWEAALVHVHAPQNNGDLSPEHPARLRLAYDELMAHQLTLA 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R + ++ +G G++ ++++ +PF+PT +Q +I +I DM+Q +M R+LQGD Sbjct: 237 LARAKDRRAVGRASVGTGRLQKRVMDQLPFAPTGAQVRSIAEISDDMAQPTKMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVA I + AVEAGGQ V+MAP ILA+QH E ++ + +++EI+TG Sbjct: 297 VGAGKTLVAFIGLLVAVEAGGQGVMMAPTEILARQHLEGLQPLAEQAGVVLEILTGRDKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 R L +A G I++GTHA+FQ +++ L L I+DEQHRFGV+QRL+L K Sbjct: 357 RERAAKLAALAAGDIQILVGTHAVFQKDVEFGDLRLAIIDEQHRFGVRQRLELGAKGPVT 416 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L GD+D+S + EKP GR P++T ++ +R+D+VI RL+ ++E Sbjct: 417 DVLVMTATPIPRSLELAQYGDMDVSVLDEKPPGRTPVQTALVATSRMDQVIARLQAAVAE 476 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540 G++AYW+CP +EE + + + ERF L + ++HG+M DK++ M F G Sbjct: 477 GRQAYWVCPLVEESEVVDMTAAEERFKRLRAVMGEGVVGLVHGQMPPADKDAAMAKFVAG 536 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG S+C+LLY P+ Sbjct: 537 ETSVLVATTVIEVGVNVPNASIMVIERAESFGLAQLHQLRGRVGRGSAASTCLLLYQAPM 596 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S+ RL +++ TEDGF I+EEDL R G+++G QSG+P+F +A E L+ +A+ Sbjct: 597 SETGKRRLEIMRETEDGFRISEEDLAIRGAGDVIGTAQSGLPQFRVADLERQLGLMAMAQ 656 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L DP LTS RGQ+ R+LL+L + +++ + I G Sbjct: 657 SDARKLLHDDPTLTSPRGQAARVLLWLMEQDKSIRLISVG 696 >gi|307295468|ref|ZP_07575304.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum L-1] gi|306878507|gb|EFN09727.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum L-1] Length = 687 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 301/707 (42%), Positives = 441/707 (62%), Gaps = 27/707 (3%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP LNPLF + +GVG + L ++ R +D+ F+ P SFIDR + Sbjct: 1 MRPDILNPLFTEIEALKGVGPALAKPLERL------GLARAVDVAFHLPVSFIDRRMVDE 54 Query: 61 ISEISEERIVTI----TGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKN 115 + R++ I T Y + S+ R P++++ D G + L++F R + + Sbjct: 55 LILSDSGRVIGIQLTPTDYRASGSA-----RAPFRVIAQDRHGNSVALVYFGRNSAWPRK 109 Query: 116 VFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKII 175 + G V+GK++ + + +VHP Y+ + P E VY L GL+ + + ++ Sbjct: 110 LLPLGEPKFVSGKLEAYGDNLQIVHPDYVLPPEEAATIPAREPVYGLSEGLTNNRLRDLV 169 Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIH-NPRKAKDFEWTSPARERLAYDELL 234 ++LSR VLPEWIE LL +K +P+ EA IH +P A+ ARERLAYDE+ Sbjct: 170 AQSLSRASVLPEWIEPSLLARKGWPAWREALTRIHADPSDAQ-------ARERLAYDEIF 222 Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 AGQ+AL+L+R+ +K GIPI +G++ + + +PF+PT +Q A +I DM+Q M Sbjct: 223 AGQLALMLVRQSSRKRRGIPIAGDGRL--RAMLQLPFAPTGAQRRAFGEIEGDMAQPVPM 280 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 LR+LQGDVGSGKTLVAL+A+ VEAG Q ++AP ILA+QHYE ++K + + I Sbjct: 281 LRLLQGDVGSGKTLVALMALLNTVEAGAQGALLAPTEILARQHYETLRKMASGLPVTIAI 340 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 +TG R L +A G I++GTHA+FQ++++Y L L ++DEQHRFGV QR+ L Sbjct: 341 LTGREKGKTRESTLMGLADGSIDILVGTHAIFQEAVRYKNLALAVIDEQHRFGVAQRMML 400 Query: 415 TQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 T KA APH+L+MTATPIPRTL LT G++D+S++ E P GR+PI+TV++ NR+DEV+E Sbjct: 401 TSKAERAPHLLVMTATPIPRTLTLTYYGEMDVSRLDEMPPGRQPIQTVVMSANRLDEVVE 460 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 L + G +AYW+CP +EE + S+ + R L F + ++HGRM +K++ Sbjct: 461 ALARHVEGGGQAYWVCPLVEESETSDQAAAEARAEMLKMRFGPLVGLVHGRMKGPEKDAA 520 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M++F + K+L+ATTVIEVG+DV ++++IIIE AE FGLAQLHQLRGRVGRG+ S CI Sbjct: 521 MEAFASARTKILVATTVIEVGVDVPNSNLIIIEGAERFGLAQLHQLRGRVGRGQNHSVCI 580 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 LL LS+ S RL++++ T DGF IAEEDL+ R GEILG +QSG + +A PE Sbjct: 581 LLRGGALSETSRARLALMRETNDGFRIAEEDLRLRGAGEILGTRQSGEQQLKLATPEHLS 640 Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 +LL+ AR DA ++ +D LT RG++ R LYL++ + A +R+G Sbjct: 641 ALLDSARDDAHLLIDRDGGLTEARGEAARTCLYLFERDAAVGLLRSG 687 >gi|260576788|ref|ZP_05844773.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2] gi|259021040|gb|EEW24351.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2] Length = 695 Score = 582 bits (1500), Expect = e-164, Method: Compositional matrix adjust. Identities = 293/700 (41%), Positives = 424/700 (60%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PL+A L T GVG K + + + R DLLF P S IDR + + Sbjct: 3 RPEQLFPLYADLETLDGVGPKTARAFAAL------GVERPKDLLFLLPHSGIDRSRKASV 56 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 ++ VT+ + H + K RPY++++ D E L+FF+ + + L + G+ Sbjct: 57 RDVVPPCTVTVEVTVGGHFPPR-SKGRPYRVMVRDEAFEFQLVFFHARADYLTKLLPTGQ 115 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 K V+G+++ MVHP ++ + P E VY L GL+ K AL+R Sbjct: 116 KRLVSGRVEIFDGVAQMVHPDHVLRPEEAGELPPFEPVYPLTAGLTQKQVAKAAQSALAR 175 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 P LPEWI+ L ++ +P A +H PR A D T+P R RLAYDEL A Q+ L Sbjct: 176 APQLPEWIDGPLKLREGWPDWHAAITAVHAPRTAADIALTAPYRLRLAYDELFAHQLTLS 235 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R ++ G+ G + ++L ++P++ T +Q A+ +I DM+ RM R+LQGD Sbjct: 236 LARASLRRGKGVASLGTGILQARVLASLPYAATAAQTRAVAEIAADMATPLRMNRLLQGD 295 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A+ AVE+GGQ V+MAP ILA+QH E + + I + ++TG Sbjct: 296 VGSGKTLVAFLALLVAVESGGQGVMMAPTEILARQHLEILSPLAKAAGIHLALLTGRDKG 355 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 + R L +A G+ +++GTHA+FQ + ++ L L +VDEQHRFGV QR++L K TA Sbjct: 356 SDREAKLADLAAGRIDVLVGTHAVFQKDVHFHDLRLAVVDEQHRFGVAQRMELGAKGTAA 415 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L S GD+D+S + EKPAGRKP+KT +I RIDEV+ L ++E Sbjct: 416 DVLVMTATPIPRSLALASYGDMDVSVLDEKPAGRKPVKTALITTARIDEVVAHLTRAVAE 475 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540 G++ YW+CP +E+ + ++ S RF L + ++HG+M DK++ M SF G Sbjct: 476 GRQVYWVCPLVEDSELVDYASAEARFQQLRAALGEGVVGLVHGQMPPADKDAAMASFVAG 535 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG S+C+L+Y PL Sbjct: 536 KTAVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGAAQSTCLLMYQAPL 595 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S+ RL+ L++TEDGF IAEEDL R G+++G QSG+PKF +A E +L+ +A+ Sbjct: 596 SEGGMRRLTTLRDTEDGFRIAEEDLAMRGAGDLIGTAQSGLPKFRVADLERQSALMAVAQ 655 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L +DP L S RG++ R+LL+L + A + I G Sbjct: 656 SDARRLLAEDPGLQSPRGKAARLLLWLLDQDRAIKLISVG 695 >gi|209885335|ref|YP_002289192.1| ATP-dependent DNA helicase RecG [Oligotropha carboxidovorans OM5] gi|209873531|gb|ACI93327.1| ATP-dependent DNA helicase RecG [Oligotropha carboxidovorans OM5] Length = 704 Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust. Identities = 306/706 (43%), Positives = 444/706 (62%), Gaps = 8/706 (1%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP LNPLFAP+++ GVG K +++ + R +DLL + PS+ IDR +PK Sbjct: 1 MRPPILNPLFAPITSLPGVGPKQDKLFRYLLD--RSETPRIVDLLLHLPSNVIDRRAQPK 58 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I + + +VT+ + +H + R PY I +D TG + L +F + L + Sbjct: 59 IRDATPGTVVTLKVTVDRHRPAPPGRSRAPYTIYASDETGTVMLTYFRPQGGYLDKLLPV 118 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G V+G + + MVHP + I+ VY L GL++ ++ + +AL Sbjct: 119 GEVRYVSGTAQMFDGMLQMVHPERVVDEEGFAKLSGIDPVYPLTEGLAIGSMRRAMAQAL 178 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 ++LP LPEWI +++++ SFP A A + +H P + D + P RLAYDELLA Q+A Sbjct: 179 TKLPQLPEWIGPEVVRRCSFPGFATALHHLHQPDEITDILPSGPFWSRLAYDELLANQLA 238 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L+R Q ++ G +G + +KI+ +P++ T SQ+ A++ I +D+ + RMLR+LQ Sbjct: 239 LALVRAQLRRPAGTRHAGDGHLRRKIIDALPYALTSSQQEAVRAIAEDLGKPLRMLRLLQ 298 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT+VAL+A AA E G Q+ +MAP ILA+QH I + + V I+TG Sbjct: 299 GDVGSGKTVVALLAAAAVAEEGRQSALMAPTEILARQHIATIAPLAERAGLRVAILTGRD 358 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 RR LE++A+G+ +++GTHAL QD + + L L IVDEQHRFGV++RL LT K Sbjct: 359 KGKDRRDILEQLANGEIDLLVGTHALIQDEVIFKSLALAIVDEQHRFGVRERLLLTDKGE 418 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 A +L+++ATPIPRTLV+T GD+DIS++ EKPAGR+PI T ++P++R+ E+IE L L Sbjct: 419 AVDMLVLSATPIPRTLVMTYFGDMDISELREKPAGRQPIDTRVVPVSRLGEIIEALGRAL 478 Query: 480 SEGKKAYWICPQIEEKK-----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534 GK+ YWICP +EE + +RF SL + F + ++HG+M +K++ M Sbjct: 479 KAGKRVYWICPLVEESDNGLGTDMGLIDATQRFESLQKTFGDVVGLVHGKMKPKEKDAAM 538 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F G +LL+ATTV+EVG+DV +A+I++IENAE FGL+QLHQLRGRVGRG E S+CIL Sbjct: 539 ARFAAGETQLLVATTVVEVGVDVPEATIMVIENAERFGLSQLHQLRGRVGRGREASTCIL 598 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 LY P + + RL V++ T DGF IAEEDL+ R EG++LG +QSG+P F IA+PE+H S Sbjct: 599 LYREPAGETATARLRVIRETTDGFRIAEEDLRLRGEGDVLGTRQSGLPGFRIARPEIHGS 658 Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 L+ AR +A IL DP L R +++R LLYL++ +EA I AG Sbjct: 659 LVAQARDEALRILQDDPKLAGERSEALRCLLYLFERDEAIPLIGAG 704 >gi|83942326|ref|ZP_00954787.1| ATP-dependent DNA helicase RecG [Sulfitobacter sp. EE-36] gi|83846419|gb|EAP84295.1| ATP-dependent DNA helicase RecG [Sulfitobacter sp. EE-36] Length = 696 Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust. Identities = 297/700 (42%), Positives = 438/700 (62%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLFA L T GVG K + +++ R DLLF P S IDR +P + Sbjct: 4 RPEALFPLFAKLETLEGVGPKTAQNFAQL----GVMAPR--DLLFTLPYSGIDRRLQPSV 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + VT+ + H + K Y+I + D L+FF+ + + K EG Sbjct: 58 KDAILPATVTVAVTVGAHRA-PANKGGAYRIHVEDSATAFQLVFFHARGDYWKRQMPEGS 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+G+++ MVHP ++ ++ + P E VY L +G++ L K ALSR Sbjct: 117 RRVVSGRVELFDGIPQMVHPDFVVPEAEAGDIPTFEPVYPLTSGITQKLMYKATRAALSR 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 +P + EWI+ + ++++P +A H P D +PAR RLAYDELLA Q+ L Sbjct: 177 VPEVGEWIDPNQKNQENWPDFPDALQQAHAPNDMADLSAAAPARARLAYDELLAHQLTLA 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R + +++ G +G + Q++L +P++PT +Q AI +I +DM+ RM R+LQGD Sbjct: 237 LARAKDRRKAGRKTVGDGHLQQRVLGALPYAPTGAQTRAIAEIAKDMASGARMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVA +A+ AVEAGGQ V+MAP ILA+QH E ++ + +++E++TG Sbjct: 297 VGAGKTLVAFMALLRAVEAGGQGVLMAPTEILARQHLEGLRPLAEQAGVVLELLTGRDKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 RR L + G I++GTHA+FQ + + L L +VDEQHRFGV+QRL+L +K A Sbjct: 357 PERRAKLSALESGAIQILVGTHAVFQADVAFGDLRLAVVDEQHRFGVRQRLELGKKGQAV 416 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L GD+D+S + EKP GRKPI+T +I +R++EV+ RL+ +SE Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPIRTALIATDRMEEVVTRLRAAISE 476 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540 G++ YW+CP +EE + S+ + RF L + ++HG+M DK++ M +F+ G Sbjct: 477 GRQCYWVCPLVEESEVSDLIAAEARFKHLRAALGEGVVGLVHGQMPPADKDAAMRAFQQG 536 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 KLL+ATTVIEVG+DV +ASII+IE AE FGLAQLHQLRGRVGRG+ S+C+L+Y PL Sbjct: 537 QTKLLVATTVIEVGVDVPNASIIVIERAESFGLAQLHQLRGRVGRGQAASTCLLMYQAPL 596 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S++ RL VL+ +EDGF+IAE DLK R G+++G QSG+P+F +A E +L+++A+ Sbjct: 597 SESGRQRLEVLRESEDGFVIAETDLKMRGTGDLIGTAQSGVPRFRVADLEKQAALMQVAQ 656 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L DPDLT+ RG++ R+LL+L + +EA + I G Sbjct: 657 SDARALLAVDPDLTTPRGKAARLLLWLMRQDEAIRLISVG 696 >gi|110679833|ref|YP_682840.1| ATP-dependent DNA helicase RecG [Roseobacter denitrificans OCh 114] gi|109455949|gb|ABG32154.1| ATP-dependent DNA helicase RecG, putative [Roseobacter denitrificans OCh 114] Length = 696 Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust. Identities = 289/700 (41%), Positives = 434/700 (62%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L LF+ L T GVG K + + + + R DLLF P + +DR +R I Sbjct: 4 RPEALFGLFSSLETLDGVGPKTAANFAGL----GVHAPR--DLLFTLPINVLDRRHRNTI 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + I T+ I H + K Y+I + D L+FF+ + + L + +G Sbjct: 58 EGLDCPTITTVAVTIGAHRPPR-TKGAAYRISVVDAEAAFQLVFFHARGDYLARILPQGS 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+GK+++ MVHP YI ++ P E VY L +G++ + K AL Sbjct: 117 RRVVSGKLERFDGVYQMVHPDYILSETEVDTIPPFEPVYPLTSGITQKVMFKATRAALKL 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 LP L EWI+ ++K +P + EAF + H P+ +D T+ ARERLAYDE+ A Q+ L Sbjct: 177 LPDLTEWIDPGQIRKAGWPDVREAFTLAHRPQAPQDISITAAARERLAYDEMFAHQMTLA 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R +++ G + G + +++ ++P+ T +Q+ AI D+ +DM++ RM R+LQGD Sbjct: 237 LARLTERQKKGRATHGTGDLQMRLIESLPYPLTGAQQRAIADVNRDMAEAVRMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVA +A+ AVE GGQ V+MAP ILA+QH + +K ++ + ++I+TG Sbjct: 297 VGAGKTLVAFLALLRAVEGGGQGVLMAPTEILARQHLQSLKPMAEHVGVRLDILTGRDTG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 R LE +A+G +++GTHA+FQ + + L L ++DEQHRFGVQQR+ L QK A Sbjct: 357 KERTAKLEDLANGNIGVLVGTHAVFQKGVTFSDLRLAVIDEQHRFGVQQRMALGQKGAAV 416 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L GD+D+S + EKP GR PIKT ++ ++R++EV+ RL V+ Sbjct: 417 DVLVMTATPIPRSLALAQFGDMDVSVLDEKPPGRMPIKTALVSVDRMEEVVSRLCAVVEG 476 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540 G++ YW+CP +EE + + + +RF L + ++HG+M +K++ M F++G Sbjct: 477 GRQCYWVCPLVEESEVVDLTAAEDRFKKLRAALGEGVVGLVHGQMPAAEKDAAMAGFESG 536 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 K+L+ATTVIEVG++V +A+I++IE AE FGLAQLHQLRGRVGRG S+C+LLY PPL Sbjct: 537 QTKVLVATTVIEVGVNVPNATIMVIERAEFFGLAQLHQLRGRVGRGTAASTCLLLYQPPL 596 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S++ RL VL+ TEDGF+IAE DLK R G+++G QSG+P+F IA E L++IA+ Sbjct: 597 SESGQRRLEVLRETEDGFMIAETDLKMRGAGDVIGTAQSGLPRFWIADLERQAGLMQIAQ 656 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L DP L + RGQ+ R+LL+L + +E+ + I G Sbjct: 657 SDARKLLADDPGLATPRGQAARMLLWLLRKDESIRLITVG 696 >gi|294011407|ref|YP_003544867.1| ATP-dependent DNA helicase RecG [Sphingobium japonicum UT26S] gi|292674737|dbj|BAI96255.1| ATP-dependent DNA helicase RecG [Sphingobium japonicum UT26S] Length = 691 Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust. Identities = 293/703 (41%), Positives = 438/703 (62%), Gaps = 19/703 (2%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP LNPLF + +GVG + L ++ R +D+ F+ P SF+DR + Sbjct: 5 MRPDILNPLFTEIEALKGVGPTLAKPLERL------GLARAVDVAFHLPVSFVDRRMVDE 58 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFE 119 + R++ IT + + + R P++++ D G + L++F R + + + Sbjct: 59 LMLGDSGRVIGITLTPTDYRASG-SARAPFRVIAQDRHGNSVALVYFGRNSAWPRKLLPL 117 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G V+GK++ + + +VHP ++ + P E VY L GL+ + + ++ +AL Sbjct: 118 GEPKFVSGKLEAYGDNLQIVHPDHVLPPEEAATIPAREPVYGLSEGLTNNRLRDLVAQAL 177 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIH-NPRKAKDFEWTSPARERLAYDELLAGQI 238 +R P LPEWIE LL +K +P EA IH +P A ARERLAYDE+ AGQ+ Sbjct: 178 ARAPELPEWIEPSLLARKGWPGWREALQRIHADPADAL-------ARERLAYDEIFAGQL 230 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 AL+L+R+ ++ G+P+ +G++ + + +PF+PT +Q A +I DM+Q MLR+L Sbjct: 231 ALMLVRQSSRRRRGVPVAGDGRL--RAMLKLPFAPTGAQSRAFMEIEGDMAQPVPMLRLL 288 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKTLVAL+A+ VEAG Q ++AP ILA+QHYE ++ ++ + I+TG Sbjct: 289 QGDVGSGKTLVALMALLNTVEAGAQGALLAPTEILARQHYETLRGMASGLRVNIAILTGR 348 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R L +A G I++GTHA+FQD+++Y L L ++DEQHRFGV QR+ L KA Sbjct: 349 EKGKARESTLMGLADGSIDILVGTHAIFQDAVRYKNLALAVIDEQHRFGVAQRMMLAAKA 408 Query: 419 T-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 APH+L+MTATPIPRTL LT G++D+S++ E P GR+PI+TV++ R+DEV+E L Sbjct: 409 ERAPHLLVMTATPIPRTLTLTYYGEMDVSRLDEMPPGRQPIQTVVMSSGRLDEVVEALAR 468 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537 + G +AYW+CP +EE + S+ + R +L F +AI+HGRM +K++ M+SF Sbjct: 469 HVEGGGQAYWVCPLVEESENSDLAAAEARAETLRTRFGERVAIVHGRMKGPEKDAAMESF 528 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 + K+L+ATTVIEVG+DV ++++IIIE A+ FGLAQLHQLRGRVGRG+ S CILL Sbjct: 529 ASARAKILVATTVIEVGVDVPNSNLIIIEGADRFGLAQLHQLRGRVGRGQNQSVCILLRG 588 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 LS+ + RL++++ T DGF IAEEDL+ R GEILG +QSG + +A PE +LL+ Sbjct: 589 NALSETARARLALMRETNDGFRIAEEDLRLRGAGEILGTRQSGEQQLKLATPEHLSALLD 648 Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 R DA ++ +D L+ RGQ+ RI LYL++ + A +R+G Sbjct: 649 PVRDDAHLLIDRDGGLSEARGQAARICLYLFERDAAVGLLRSG 691 >gi|299133934|ref|ZP_07027128.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2] gi|298591770|gb|EFI51971.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2] Length = 702 Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust. Identities = 306/704 (43%), Positives = 444/704 (63%), Gaps = 6/704 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP+ LNPLFAP+++ GVG K +++ + R +DLL + PS+ IDR +P Sbjct: 1 MRPNVLNPLFAPVTSLAGVGPKQDKLFRYLLD--RSETPRIVDLLLHLPSNVIDRRAQPD 58 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I + +VT+ I +H + + R PY + +D TG + L +F + L + Sbjct: 59 IRDAVPGTVVTLKVTIDRHRAPPPGRSRAPYTVFASDDTGTVMLTYFRPQGGYLDKLLPI 118 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G V+G ++ + MVHP + I+ VY L GL++ ++ + +AL Sbjct: 119 GEVRYVSGTVQMFDGTLQMVHPDRVVDEEGFAKLSGIDPVYPLTEGLAIGSVRRAVAQAL 178 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 ++LP LPEWI +++++ SFP + A + IH P + D P RLA+DELLA Q+A Sbjct: 179 TKLPQLPEWISPEVVRRCSFPDFSAALHRIHQPEEITDILPDGPFWSRLAFDELLANQLA 238 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L+R Q ++ G +G + KI+ +PF+ T SQ+ A + I +D+ + RMLR+LQ Sbjct: 239 LALVRAQLRRAAGTRHAGDGHLRAKIIDALPFALTPSQQDAARAIAEDLGKPLRMLRLLQ 298 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT+VAL+A AA VE G Q+ +MAP ILA+QH I + + V I+TG Sbjct: 299 GDVGSGKTVVALLAAAAVVEEGRQSALMAPTEILARQHIATIAPLAERAGLRVAILTGRD 358 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 RR LER+A+G+ +++GTHAL QD + + L L IVDEQHRFGV++RL LT K Sbjct: 359 KGKERRDILERLANGEIDLLVGTHALIQDEVIFKSLALAIVDEQHRFGVRERLLLTGKGE 418 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 A +L+++ATPIPRTLV+T GD+DIS++ EKPAGR+PI T ++P +R+ E+I+ L L Sbjct: 419 AVDMLVLSATPIPRTLVMTYFGDMDISELREKPAGRQPIDTRVVPNSRLGEIIDALGRAL 478 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVE---RFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 GK+ YWICP +EE +V+ RF SL + F + ++HG+M DK++ M Sbjct: 479 DAGKRIYWICPLVEESDAETALPLVDATQRFESLQKKFGGVVGLVHGQMKPKDKDAAMAR 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F +G +LL+ATTV+EVG+DV +A+I++IENAE FGL+QLHQLRGR+GRG E S+CILLY Sbjct: 539 FASGETQLLVATTVVEVGVDVPEATIMVIENAERFGLSQLHQLRGRIGRGHEASTCILLY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 H P + + RL V++ T DGF IAEEDL+ R EG++LG +QSG+P F IA+PE+H L+ Sbjct: 599 HEPAGEIATARLRVIRETTDGFRIAEEDLRLRGEGDVLGTRQSGLPGFRIARPEIHGGLV 658 Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 AR +A I+ D L RG+++R LLYL++ +EA I AG Sbjct: 659 AQARDEALRIMQDDAKLDGERGEALRCLLYLFERDEAIPLIGAG 702 >gi|83953545|ref|ZP_00962266.1| ATP-dependent DNA helicase RecG [Sulfitobacter sp. NAS-14.1] gi|83841490|gb|EAP80659.1| ATP-dependent DNA helicase RecG [Sulfitobacter sp. NAS-14.1] Length = 696 Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust. Identities = 295/700 (42%), Positives = 437/700 (62%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLFA L T GVG K + +++ R DLLF P S IDR +P + Sbjct: 4 RPEALFPLFAKLETLEGVGPKTAQNFAQL----GVMAPR--DLLFTLPYSGIDRRLQPSV 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + VT+ + H + K Y+I + D L+FF+ + + K EG Sbjct: 58 KDAILPATVTVAVTVGAHRA-PANKGGAYRIHVEDSATAFQLVFFHARGDYWKRQMPEGS 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+G+++ MVHP ++ ++ + P E VY L +G++ L K ALSR Sbjct: 117 RRVVSGRVELFDGIPQMVHPDFVVPEAEAGDIPTFEPVYPLTSGITQKLMYKATRAALSR 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 +P + EWI+ + ++++P +A + H P D +PAR RLAYDELLA Q+ L Sbjct: 177 VPEVGEWIDPNQKNQENWPDFPDALHQAHAPNDMADLSAAAPARARLAYDELLAHQLTLA 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R + +++ G +G + Q++L +P++PT +Q AI +I +DM+ RM R+LQGD Sbjct: 237 LARAKDRRKAGRKTLGDGHLQQRVLGALPYAPTGAQTRAIAEIAKDMASGARMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVA +A+ AVEAGGQ V+MAP ILA+QH E ++ + ++++++TG Sbjct: 297 VGAGKTLVAFMALLRAVEAGGQGVLMAPTEILARQHLEGLRPLAEQAGVVLDLLTGRDKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 RR L + G I++GTHA+FQ + + L L +VDEQHRFGV+QRL+L +K A Sbjct: 357 PERRAKLSALESGAIQILVGTHAVFQADVAFGDLRLAVVDEQHRFGVRQRLELGKKGQAV 416 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L GD+D+S + EKP GRKPI+T +I +R++EV+ RL+ +SE Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPIRTALIATDRMEEVVTRLRAAISE 476 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540 G++ YW+CP +EE + S+ + RF L + ++HG+M DK++ M +F+ G Sbjct: 477 GRQCYWVCPLVEESEVSDLIAAEARFKHLRAALGEGVVGLVHGQMPPADKDAAMRAFQQG 536 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 KLL+ATTVIEVG+DV +ASII+IE AE FGLAQLHQLRGRVGRG+ S+C+L+Y PL Sbjct: 537 QTKLLVATTVIEVGVDVPNASIIVIERAESFGLAQLHQLRGRVGRGQAASTCLLMYQAPL 596 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S++ RL VL+ +EDGF+IAE DLK R G+++G QSG+P+F +A E L+++A+ Sbjct: 597 SESGRQRLEVLRESEDGFVIAETDLKMRGTGDLIGTAQSGVPRFRVADLEKQAGLMQVAQ 656 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L DPDL + RG++ R+LL+L + +EA + I G Sbjct: 657 SDARALLAVDPDLATPRGKAARLLLWLMRQDEAIRLISVG 696 >gi|259416724|ref|ZP_05740644.1| ATP-dependent DNA helicase RecG [Silicibacter sp. TrichCH4B] gi|259348163|gb|EEW59940.1| ATP-dependent DNA helicase RecG [Silicibacter sp. TrichCH4B] Length = 696 Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust. Identities = 296/700 (42%), Positives = 427/700 (61%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLFA L T +GVG K + +++ T DLLF P S +DR R I Sbjct: 4 RPEQLFPLFAELETLQGVGPKIAEHFAQL------QITAPRDLLFSLPYSLVDRRRRETI 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + T+ + +H + K Y+I + D E L+FF+ ++ L EG Sbjct: 58 RGLELPTTATVEITVGRHRPAR-NKGGAYRIDVTDQETEFQLVFFHGRSRYLTAQLPEGS 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+GK++ MVHP ++ + + P E VY L G++ K + AL R Sbjct: 117 RRVVSGKLELFDGMAQMVHPDHMLPLEEAGDIPDFEPVYHLTHGITQKTMFKAVQSALQR 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 +P L EW++ K+ + EA H P D E +PAR RLAYDEL A Q+ L Sbjct: 177 VPELTEWMDASYKTKRGWADWHEAIATAHAPGHLSDLEPEAPARARLAYDELFAHQLTLA 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 + R +++ G GK+ K+L +P+ PT +Q AI++I DM+ RM R+LQGD Sbjct: 237 IARSVEREQPGRSSVATGKLQNKVLSALPYKPTGAQGRAIEEITADMASGRRMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVA +A+ AVEAGGQ V+MAP ILA+QH E +K + +++EI+TG Sbjct: 297 VGAGKTLVAFMALLVAVEAGGQGVMMAPTEILARQHLEGLKPLADDAGVVLEILTGRDKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 RR E + G HI++GTHA+FQ + + L LVIVDEQHRFGV+QR++L +K Sbjct: 357 KDRRAKTEALQRGDIHILVGTHAVFQQDVVFDDLRLVIVDEQHRFGVRQRMELAEKGKRS 416 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L LT GD+++S + EKP GRKPIKT I+ R+ EV++ L+ ++E Sbjct: 417 DVLVMTATPIPRSLALTQYGDMEVSILDEKPPGRKPIKTAILSTERMSEVVDHLRRAIAE 476 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540 G++ YW+CP +EE + + + ERF L + ++HG+M +K++ M +F+ G Sbjct: 477 GRQCYWVCPLVEESEVMDLTAADERFKHLRAVLGDDVVGLVHGQMPPAEKDAAMAAFQEG 536 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG S+C+L+Y PPL Sbjct: 537 RTRVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGTAQSTCLLMYQPPL 596 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 ++ RL VL+ +EDGF+IAE DL+ R G+++G QSG+P+F IA E L+ IA+ Sbjct: 597 TEGGRRRLEVLRESEDGFVIAETDLQMRGAGDVIGTAQSGLPRFRIADLERQADLMAIAQ 656 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ ++T DPDLTS RG++ R LL+L + +EA + I G Sbjct: 657 SDARALMTSDPDLTSDRGRAARTLLWLLRQDEAIRLISVG 696 >gi|170744355|ref|YP_001773010.1| ATP-dependent DNA helicase RecG [Methylobacterium sp. 4-46] gi|168198629|gb|ACA20576.1| DEAD/DEAH box helicase domain protein [Methylobacterium sp. 4-46] Length = 704 Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust. Identities = 295/703 (41%), Positives = 439/703 (62%), Gaps = 4/703 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 +RPS L+PLFAP + G G K + L +++ + R +DLLF+ P + R + Sbjct: 3 LRPSLLDPLFAPATVLLGAGPKMAALLDRLLGTPE-HPARVVDLLFHLPHGGVARQLKGS 61 Query: 61 ISEISEERIVTITGYISQHSSFQ-LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I+E VT+ + H Q + RRPY++L+ DG+G+I+L+FF ++ + Sbjct: 62 IAEAPTGEPVTLCVTVVAHRPPQTVGARRPYRVLVEDGSGDISLVFFNMPRARIEKMLPV 121 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G + V+G+I+ MVHP I + + P +E +Y GL+ K+ A+ Sbjct: 122 GARRYVSGRIELWDGFRQMVHPARILDDKGFSDLPAVEPLYGATEGLTSRAIGKLAQGAV 181 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP--RKAKDFEWTSPARERLAYDELLAGQ 237 RLP LPEW + L ++ +P A+A H P + E R RLAYDELLA Q Sbjct: 182 ERLPDLPEWQDPAWLARQRWPGFAQALRAEHRPDAPPPAEGEPPPATRRRLAYDELLASQ 241 Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 +AL L+R + ++ G +G ++++I +PF T +Q A+ +I DM RMLR+ Sbjct: 242 LALALVRSRMRRPPGRINAGDGDLSRRIEAALPFRLTGAQIRALAEIRGDMRSDRRMLRL 301 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 LQGDVGSGKT VA++AMA+A+EAG QA +MAP ILA+QH E ++ ++ + + ++TG Sbjct: 302 LQGDVGSGKTAVAMLAMASAIEAGRQAAMMAPTEILARQHAERLRPLAESAGLSLVLMTG 361 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 A RR L+ +A G I +GTHALFQ+ + + L L +VDEQHRFGV QRL L K Sbjct: 362 RDRTAERRATLKGLAEGSIAIAVGTHALFQEEVAFRDLGLAVVDEQHRFGVHQRLALGAK 421 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 A +L+MTATPIPR+L LT GD+++S + EKPAGR+PI T ++ RIDEV+ L+ Sbjct: 422 GEAVDILVMTATPIPRSLALTYFGDMEVSVLDEKPAGRQPIATRLVSTERIDEVVAGLER 481 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537 L+ G++ YWICP + E + + + ER L +HF +++ ++HG+M DK+ M F Sbjct: 482 ALARGERVYWICPLVAESEVIDLAAAEERCADLRQHFGAAVGLVHGKMPGRDKDEAMARF 541 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 +G ++L++TTV+EVG+DV +A+I++IE+AE FGLAQLHQLRGRVGRG S+C+LLY Sbjct: 542 ASGETRILVSTTVVEVGVDVPEATIMVIEHAERFGLAQLHQLRGRVGRGAAASTCLLLYR 601 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PL + + RL +++ TEDGF IAEEDL+ R EGE+LG +QSG+ F +A+PE+ LL Sbjct: 602 GPLGQVARARLEMMRETEDGFRIAEEDLRLRGEGEVLGTRQSGLAAFRLARPEVDGDLLL 661 Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 AR DA+ I+ +DP L RG+++R+LL L++ + A + + AG Sbjct: 662 AARDDARLIVERDPGLAGERGRALRVLLSLFERDAAVRLLGAG 704 >gi|39935728|ref|NP_948004.1| ATP-dependent DNA helicase [Rhodopseudomonas palustris CGA009] gi|39649581|emb|CAE28103.1| ATP-dependent DNA helicase [Rhodopseudomonas palustris CGA009] Length = 700 Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust. Identities = 311/702 (44%), Positives = 444/702 (63%), Gaps = 4/702 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP+ LNPLFAP+++ GVG K +++ + R DLL + P+S IDR RPK Sbjct: 1 MRPALLNPLFAPVTSLTGVGPKQDKLFRYLLD--RDDTPRLADLLLHLPTSVIDRRARPK 58 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I + +VT+ + +H + + R PY + +D TG++ L FF K + ++ + Sbjct: 59 IRDAVPGTVVTLEVTVDRHRAPPPGRSRAPYLVHASDDTGDVVLTFFRAKPDFVQKLLPV 118 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G K ++G + + +VHP + P I++VY L GL++ ++ + +AL Sbjct: 119 GAKRYISGTGQLYDGTLQIVHPDRVVDEEGFAKLPQIDSVYPLTEGLAIGSLRRAVAQAL 178 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 ++LP LPEWI ++L++ FPS A+A +H P + D P RLAYDELLAGQ+A Sbjct: 179 TKLPALPEWISPEVLRRCRFPSFADALKHVHIPDQPTDILPDGPYWSRLAYDELLAGQLA 238 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L+R Q ++ G +G++ KI+ +P++ T SQ+ A I +D+ Q RMLR+LQ Sbjct: 239 LALVRAQLRRPAGSRNAGDGRLRHKIIDALPYALTNSQQQAAAAIAEDLRQPVRMLRLLQ 298 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT+VAL+A AA EAG QA +MAP ILA+QH + I + + V I+TG Sbjct: 299 GDVGSGKTVVALLAAAAVAEAGKQAALMAPTEILARQHIKTIAPLAERAGMQVAILTGRE 358 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 RR+ LER+A G+ ++GTHAL QD + Y L L +VDEQHRFGV++RL LT K Sbjct: 359 KGKERREILERLAAGEIDFLVGTHALIQDDVIYKSLALAVVDEQHRFGVRERLALTSKGA 418 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 VL+++ATPIPRTLVLT GD+D+S++ EKPAGR+PI T + R+ EVI+ + + Sbjct: 419 DVDVLVLSATPIPRTLVLTYFGDMDVSELREKPAGRQPIDTRTLSDTRLPEVIDGIGRAI 478 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538 + GK+ YWICP +EE + +RF SL + F + ++HGRM DK+ VM F Sbjct: 479 AAGKRVYWICPLVEESENVKLTDAEQRFESLRQRFGDHQVGLVHGRMRGSDKDLVMGQFA 538 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G +L+ATTV+EVG+DV +ASI++IENAE FGLAQLHQLRGR+GRG E S+C+LLY Sbjct: 539 RGEISVLVATTVVEVGVDVPEASIMVIENAERFGLAQLHQLRGRIGRGSEASTCLLLYRE 598 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PL + S RL V+++T DGF IAEEDLK R EG++LG +QSG+P + IA+ E+H L+ Sbjct: 599 PLGELSGARLRVIRDTTDGFRIAEEDLKLRGEGDVLGTRQSGLPGYRIARSEVHAQLITQ 658 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 AR +A IL +P L G+++R LLYLY+ +EA + AG Sbjct: 659 ARDEALRILKDNPKLEGPSGEALRCLLYLYERDEAIPLLGAG 700 >gi|260426067|ref|ZP_05780046.1| ATP-dependent DNA helicase RecG [Citreicella sp. SE45] gi|260420559|gb|EEX13810.1| ATP-dependent DNA helicase RecG [Citreicella sp. SE45] Length = 696 Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust. Identities = 293/700 (41%), Positives = 427/700 (61%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLFA L T GVG K + L + + DLLF P IDR R + Sbjct: 4 RPEPLWPLFAELKTLDGVGPKTAQALEGL------DVVAPRDLLFTLPHGVIDRRPRETV 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 +VT+ + +H QK RPY+I + D L+FF+ + + L + EG Sbjct: 58 LGADLPGVVTVEVTVGRHMK-PAQKGRPYRIHVEDARSGFQLVFFHGREDYLSRILPEGA 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+G+++ MVHP ++ + P E VY L G++ L + +AL+ Sbjct: 117 RRLVSGRVELFDGMAQMVHPDHVLPVDEAATLPAFEPVYPLTAGVTQKLMTRATADALTM 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 P L EWI+ L ++ +P +A H P + D T+PAR RLAYDEL+A Q+ L Sbjct: 177 APELGEWIDGPLKAREGWPDWRDALVRAHAPEGSGDLAPTAPARARLAYDELMAHQLTLA 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R +K G G + +K+L +PF PT +Q A+ +I DM+ RM R+LQGD Sbjct: 237 LARVHRRKGKGRETIGSGALRRKVLAALPFRPTGAQMRAMDEIAGDMAAPERMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVA +A+ AVEAGGQ V+MAP ILA+QH + +K + ++VE++TG Sbjct: 297 VGAGKTLVAFMALLIAVEAGGQGVMMAPTEILARQHLDGLKPLAEAAGVVVELLTGRDKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 + R+ L +A G H+++GTHA+FQ +++ L L IVDEQHRFGV+QRL+L +K A Sbjct: 357 SERKAKLAALARGDIHVLVGTHAVFQADVEFADLRLAIVDEQHRFGVRQRLELGRKGAAA 416 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L GD+D+S + EKP GRKPI+T ++ R+ EV+E L+ + E Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPIRTALVSAERMAEVVEHLRGAVGE 476 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540 G++AYW+CP +EE + + + ERF L + + ++HG+M +K++ M F G Sbjct: 477 GRQAYWVCPLVEESEAVDLTAAEERFKRLRAALGEAVVGLVHGQMPPAEKDTAMARFVAG 536 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 K+L+ATTVIEVG++V +ASI++IE AE+FGLAQLHQLRGRVGRGE S+C+L+Y PL Sbjct: 537 ETKVLVATTVIEVGVNVPNASIMVIERAEYFGLAQLHQLRGRVGRGEAESTCLLMYQGPL 596 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + RL+ L+ TEDGF I+E DL+ R G+++G QSG+P+F +A E L+ +A+ Sbjct: 597 GEAGMRRLTTLRETEDGFRISEVDLEMRGAGDLIGTAQSGLPRFRVADLEHQAGLMAMAQ 656 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L +DP L S RG++ R+LL+L + +EA + I G Sbjct: 657 TDARKLLAEDPGLESERGRAARMLLWLMRQDEAIRLISVG 696 >gi|192291314|ref|YP_001991919.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris TIE-1] gi|192285063|gb|ACF01444.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris TIE-1] Length = 700 Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust. Identities = 311/702 (44%), Positives = 442/702 (62%), Gaps = 4/702 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP+ LNPLFAP+++ GVG K +++ + R DLL + P+S IDR RPK Sbjct: 1 MRPALLNPLFAPVTSLTGVGPKQDKLFRYLLD--RDDTPRLADLLLHLPTSVIDRRARPK 58 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I + +VT+ + +H + + R PY + +D TG++ L FF K + ++ + Sbjct: 59 IRDAVPGTVVTLEVTVDRHRAPPPGRSRAPYLVYASDDTGDVVLTFFRAKPDFVQKLLPV 118 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G K ++G + + +VHP + P I+ VY L GL++ ++ + +AL Sbjct: 119 GAKRYISGTGQLYDGTLQIVHPDRVVDEEGFAKLPQIDPVYPLTEGLAIGSLRRAVAQAL 178 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 ++LP LPEWI ++L++ FPS A+A +H P + D P RLAYDELLAGQ+A Sbjct: 179 TKLPALPEWISPEVLRRCRFPSFADALKHVHIPDQPTDILPDGPYWSRLAYDELLAGQLA 238 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L+R Q ++ G +G++ KI+ +P++ T SQ+ A I +D+ Q RMLR+LQ Sbjct: 239 LALVRAQLRRPAGSRNAGDGRLRHKIIDALPYALTNSQQQAAAAIAEDLRQPVRMLRLLQ 298 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT+VAL+A AA EAG QA +MAP ILA+QH + I + V I+TG Sbjct: 299 GDVGSGKTVVALLAAAAVAEAGKQAALMAPTEILARQHIKTIAPLADRAGMQVAILTGRE 358 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 RR+ LER+A G+ ++GTHAL QD + Y L L +VDEQHRFGV++RL LT K Sbjct: 359 KGKERREILERLAAGEIDFLVGTHALIQDDVIYKSLALAVVDEQHRFGVRERLALTSKGA 418 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 VL+++ATPIPRTLVLT GD+D+S++ EKPAGR+PI T + R+ EVI+ + + Sbjct: 419 DVDVLVLSATPIPRTLVLTYFGDMDVSELREKPAGRQPIDTRTLSDTRLPEVIDGIGRAI 478 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538 + GK+ YWICP +EE + +RF SL + F + ++HGRM DK+ VM F Sbjct: 479 ATGKRVYWICPLVEESENVKLTDAEQRFESLRQRFGDHQVGLVHGRMRGSDKDLVMGQFA 538 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G +L+ATTV+EVG+DV +ASI++IENAE FGLAQLHQLRGR+GRG E S+C+LLY Sbjct: 539 RGEISVLVATTVVEVGVDVPEASIMVIENAERFGLAQLHQLRGRIGRGSEASTCLLLYRE 598 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PL + S RL V+++T DGF IAEEDLK R EG++LG +QSG+P + IA+ E+H L+ Sbjct: 599 PLGELSGARLRVIRDTTDGFRIAEEDLKLRGEGDVLGTRQSGLPGYRIARSEVHAQLITQ 658 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 AR +A IL +P L G+++R LLYLY+ +EA + AG Sbjct: 659 ARDEALRILKDNPKLEGPSGEALRCLLYLYERDEAIPLLGAG 700 >gi|126736447|ref|ZP_01752188.1| ATP-dependent DNA helicase RecG [Roseobacter sp. CCS2] gi|126713985|gb|EBA10855.1| ATP-dependent DNA helicase RecG [Roseobacter sp. CCS2] Length = 696 Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust. Identities = 283/700 (40%), Positives = 429/700 (61%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLF ++ G+G K + L + + +D+L P S +DRH R I Sbjct: 4 RPETLFPLFGAVTKLDGIGPKSAQTLDGV------GVVKPLDILMTLPLSGVDRHRRASI 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 E+ + T+ + H + PY++ + D L+FF+ + + L+ + G+ Sbjct: 58 REVVAPSVATVEVTVGDHYPPS-TRGHPYRVHVEDAETSFQLVFFHARGDYLQKLLPTGQ 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+GK++ +VHP ++ ++ + P E VY L G++ K AL Sbjct: 117 RRVVSGKVEIFDGIAQIVHPDHVLPVAEAEDIPAFEPVYPLHAGITQKAMWKATRSALGL 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 +P LPEWI+ L ++ +P A+A + H P+ D SPAR RLAYDELLA Q+ L Sbjct: 177 MPKLPEWIDPALKAREDWPDWADAMHKAHGPQATSDLSPHSPARARLAYDELLAHQLTLA 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R +K GI G ++ ++L ++P+ PT +Q+ A +I D++ RM R+LQGD Sbjct: 237 LARAATRKAKGIASQATGDLSGRVLASLPYKPTGAQQRAFAEIAADLATPLRMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVAL+A+ VEAGGQ V+MAP ILA+QH + ++ ++ +++EI+TG Sbjct: 297 VGSGKTLVALMALLDVVEAGGQGVMMAPTEILARQHLDGLRPLAESAGVVLEILTGRDKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 + R L+ +A G+ +I++GTHA+FQ I + L L I+DEQHRFGV QR++L K A Sbjct: 357 SGRAAKLKALADGEINILVGTHAVFQKDIVFKDLRLAIIDEQHRFGVSQRMELGAKGQAV 416 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L GD+D+S + EKP GR P++T ++ R+DEVIE+L+ ++E Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRTPVQTALVSAARMDEVIEKLRHAVAE 476 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540 G++AYW+CP +EE + + + ERF L + ++HG+M +K++ M F G Sbjct: 477 GRQAYWVCPLVEESEIVDMTAAEERFKRLRATLGEGVVGLVHGQMPPAEKDAAMARFVAG 536 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 K+L+ATTVIEVG++V +ASI++IE+A+ FGLAQLHQLRGRVGRG SSC+L+Y PPL Sbjct: 537 ETKVLVATTVIEVGVNVPNASIMMIEHADRFGLAQLHQLRGRVGRGSAASSCLLIYQPPL 596 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 ++ RL +L+ TEDGF I+EEDL R G+++G QSG+P+F IA E + +A+ Sbjct: 597 GESGRRRLEILRETEDGFRISEEDLAMRGAGDVIGTAQSGIPRFRIADLERQAGQMAVAQ 656 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L DP L + RG++ R LL+L + ++A + I G Sbjct: 657 SDARALLNADPKLETARGKAARTLLWLMEQDKAIRLISVG 696 >gi|94495557|ref|ZP_01302137.1| DNA helicase [Sphingomonas sp. SKA58] gi|94424945|gb|EAT09966.1| DNA helicase [Sphingomonas sp. SKA58] Length = 687 Score = 575 bits (1482), Expect = e-162, Method: Compositional matrix adjust. Identities = 293/707 (41%), Positives = 442/707 (62%), Gaps = 27/707 (3%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP LNPLFA +S F+GVG + L ++ + R +D+ F+ P ++DRH + Sbjct: 1 MRPDILNPLFAEISLFKGVGPALARPLERL------DLKRAVDVAFHLPVGWVDRHLTDR 54 Query: 61 ISEISEERIV----TITGYISQHSSFQLQKRRPYKILLNDGTGE-ITLLFFYRKTEMLKN 115 + RI+ T Y + S+ R P+++L DG G + L++F + + + Sbjct: 55 LDMADAGRIIGTLLTPVDYRAGGSA-----RAPFRVLAADGQGNGVALVYFGKNSGWPRK 109 Query: 116 VFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKII 175 + V+GK++ + +VHP ++ + P E+VY L GL+ + + + Sbjct: 110 LLPLNEPKFVSGKLEAYGENLQIVHPDHVLPPEEADTVPARESVYGLSEGLTNNRMRDLA 169 Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIH-NPRKAKDFEWTSPARERLAYDELL 234 +AL+R P LPEWIE LL +K +P+ EA H +P PARERLAYDE+ Sbjct: 170 AQALARAPDLPEWIEPSLLARKGWPAWREALARAHADP-------GDGPARERLAYDEIF 222 Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 AGQ+AL+L+R+ ++ G+ I +G++ + + +PF+PT +Q AI +I DM+Q M Sbjct: 223 AGQLALMLVRQSSRRRRGVSIQGDGRL--RAMLKLPFAPTGAQRRAIGEIEGDMAQATPM 280 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 LR+LQGDVGSGKTLVAL+A+ AVEAG Q ++AP ILA+QH++ ++K T I + I Sbjct: 281 LRLLQGDVGSGKTLVALMALLNAVEAGMQGAMLAPTEILARQHHDTLRKMTSGLPIEIAI 340 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 +TG R L +A G I++GTHA+FQ++++Y L L ++DEQHRFGV QR+ L Sbjct: 341 LTGREKGKVREATLMGLADGSIDILVGTHAIFQEAVRYKALGLAVIDEQHRFGVAQRMML 400 Query: 415 TQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 KA APH+L+MTATPIPRTL LT G++D+S++ E P GR+PI+T+++ +R+DEV++ Sbjct: 401 ANKAERAPHLLVMTATPIPRTLTLTYYGEMDVSRLDEMPPGRQPIQTLVMAASRLDEVVD 460 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 L + G +AYW+CP +EE + S+ + R SL F + ++HGRM +K++ Sbjct: 461 ALARHVDGGGQAYWVCPLVEESETSDQAAAEARAESLRLRFGDRVGLVHGRMKGPEKDAA 520 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M++F ++L+ATTVIEVG+DV ++S+IIIE A+ FGLAQLHQLRGRVGRG++ S+C+ Sbjct: 521 MEAFAGNRTQILVATTVIEVGVDVPNSSLIIIEGADRFGLAQLHQLRGRVGRGDKSSTCL 580 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 LL L + S RL++++ T DGF IAEEDLK R GE+LG +QSG + +A PE Sbjct: 581 LLRGNALGETSRARLALMRETNDGFRIAEEDLKLRGAGEVLGTRQSGEAQLKLATPEHVA 640 Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 +L++ AR DA ++ +D L S RGQ+ R LYL++ + A +R G Sbjct: 641 ALVDAARDDANLLIERDGGLDSARGQAARTCLYLFEKDAAVGLLRGG 687 >gi|126726436|ref|ZP_01742277.1| ATP-dependent DNA helicase RecG [Rhodobacterales bacterium HTCC2150] gi|126704299|gb|EBA03391.1| ATP-dependent DNA helicase RecG [Rhodobacterales bacterium HTCC2150] Length = 696 Score = 575 bits (1482), Expect = e-161, Method: Compositional matrix adjust. Identities = 294/700 (42%), Positives = 434/700 (62%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLFA L T G+G K + N + T+ DLLF P + IDR R I Sbjct: 4 RPPVLFPLFAALETLDGIGPKTAK------NFEGLDVTKPRDLLFTLPYAGIDRRKRATI 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 +VT+ + H+ K RPY++ + D T E L+FF+ + + ++ + G+ Sbjct: 58 KGADLPGVVTVEVEVGHHNPPS-HKSRPYRVTVMDETTEFQLVFFHARGDYVQKLLPTGQ 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+G+++ MVHP ++ + + P+ E +Y L G++ + K I + R Sbjct: 117 RRVVSGRVELFDGIAQMVHPDHVLSPNAANSIPVFEPIYPLTHGVTQKMITKAIKGVMQR 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 LP++ EWI+ + +P A H+P DF +P R RLAYDE+ A QI L Sbjct: 177 LPMVEEWIDPSQKAQAEWPDWNLAITKAHHPENMGDFGANTPERLRLAYDEMFAHQITLA 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R + + G GK+ K+L +P++PT +Q IK+I D++ RM R+LQGD Sbjct: 237 LARARNSAKPGRISKSTGKLQNKVLAALPYNPTSAQARTIKEIQADLNSNKRMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVAL+A+ A VEAGGQ V+MAP ILA+QH + ++ ++ +++E++TG Sbjct: 297 VGAGKTLVALMALLAVVEAGGQGVMMAPTEILARQHLDGLRPLAESAGVVLELLTGRDKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 R L +A+G HI++GTHA+FQ +++ L L IVDEQHRFGV+QR+ L K + Sbjct: 357 RERAAKLAALANGDIHILVGTHAVFQKDVEFQDLRLAIVDEQHRFGVRQRMDLGAKGPSA 416 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L GD+D+S + EKP GR PIKT ++ +R+D+V+ L+ +SE Sbjct: 417 DVLVMTATPIPRSLALAQFGDMDVSILDEKPPGRTPIKTAMVANSRLDQVVGNLQRAVSE 476 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNG 540 GK+AYW+CP ++E + S+ + ERF L ++ ++HG+M +K++ M F +G Sbjct: 477 GKQAYWVCPLVDESEVSDLTAAEERFKRLRAVMPDGTVGLVHGQMPPAEKDAAMARFISG 536 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 K+L+ATTVIEVG+DV +A+I++IE AE FGLAQLHQLRGRVGRG S+C+LLY PPL Sbjct: 537 ETKILVATTVIEVGVDVPNATIMVIERAESFGLAQLHQLRGRVGRGAAASTCVLLYAPPL 596 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S+ RL VL++TEDGF IAEEDL R G+++G QSG+PKF IA E SL++IA+ Sbjct: 597 SEGGERRLRVLRDTEDGFKIAEEDLAMRGAGDLIGTAQSGLPKFRIADLENQASLMQIAQ 656 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L DP L + RG++ R+LL+L + ++A + I G Sbjct: 657 SDARKLLHDDPILETPRGKAARVLLWLMEQDQAIRLISVG 696 >gi|86749969|ref|YP_486465.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2] gi|86572997|gb|ABD07554.1| ATP-dependent DNA helicase RecG [Rhodopseudomonas palustris HaA2] Length = 728 Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust. Identities = 313/702 (44%), Positives = 439/702 (62%), Gaps = 4/702 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP+ LNPLFAP++ GVG K +++ + R DLL + P S IDR RPK Sbjct: 29 MRPALLNPLFAPVTGLTGVGPKQDKLFRYLLD--RDDTPRLADLLLHLPVSVIDRRSRPK 86 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I + +VT+ + +H + R PY + +D TG++ L FF K E ++ + Sbjct: 87 IRDAQPGTVVTLEVTVDRHRPPPPGRSRAPYLVYASDETGDVILTFFRAKPEFVEKLLPV 146 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G K V+G + + +VHP + P I+ VY L GL++ ++ + +AL Sbjct: 147 GAKRYVSGTGQLYDGTLQIVHPDRVVDEEGFAKLPKIDPVYPLTEGLAIGSLRRAVAQAL 206 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 +RLP LPEWI ++L++ SFP+ AEA +H P + D P RLAYDELLAGQ+A Sbjct: 207 TRLPALPEWISPEVLRRCSFPAFAEALQRVHIPHEPTDILPDGPFWSRLAYDELLAGQLA 266 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L+R Q ++ G +G++ KI+ +P++ T SQ++A I +D+ Q RMLR+LQ Sbjct: 267 LALVRAQLRRPAGTRNAGDGRLRHKIIDALPYALTASQQAAAAAIAEDLQQPVRMLRLLQ 326 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT+VAL+A AA EAG QA +MAP ILA+QH + I + + V I+TG Sbjct: 327 GDVGSGKTVVALLAAAAVAEAGKQAALMAPTEILARQHIKTIAPLAERAGMQVAILTGRE 386 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 RR L R+ G+ ++GTHAL QD + Y L L +VDEQHRFGV++RL LT K Sbjct: 387 KGKERRDLLARLEAGEIDFLVGTHALIQDDVTYNSLALAVVDEQHRFGVRERLALTSKGD 446 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 A VL+++ATPIPRTLVLT GD+D+S++ EKPAGR+PI T + R+ EVI+ + + Sbjct: 447 AVDVLVLSATPIPRTLVLTYFGDMDVSELREKPAGRQPIDTRALSDTRLPEVIDGIGRAI 506 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538 + GK+ YWICP +EE + +R+ SL + F + ++HGRM DK+ VM F Sbjct: 507 AAGKRVYWICPLVEESENVKLTDAEQRYESLRQRFGDQQVGLVHGRMKGADKDRVMAQFA 566 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G +L+ATTV+EVG+DV +ASI++IENAE FGLAQLHQLRGR+GRG E S+C+LLY Sbjct: 567 GGEISVLVATTVVEVGVDVPEASIMVIENAERFGLAQLHQLRGRIGRGSEASTCLLLYKE 626 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PL + S RL V++ T DGF IAEEDLK R EG++LG +QSG+P + IA+ E+H L+ Sbjct: 627 PLGEMSAARLRVIRETADGFRIAEEDLKLRGEGDVLGTRQSGLPGYRIARSEVHGQLITQ 686 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 AR +A IL +P L G+++R LLYLY+ +EA + AG Sbjct: 687 ARDEALRILEDNPKLEGPSGEALRCLLYLYERDEAIPLLGAG 728 >gi|89069524|ref|ZP_01156868.1| Haem peroxidase [Oceanicola granulosus HTCC2516] gi|89044859|gb|EAR50949.1| Haem peroxidase [Oceanicola granulosus HTCC2516] Length = 696 Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust. Identities = 296/700 (42%), Positives = 421/700 (60%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLFA LS G+G K + L+ A + D+LF P S IDR R + Sbjct: 4 RPEPLWPLFADLSELDGIGPKTAKALA------GAGIGKPRDMLFTLPHSGIDRTLRATV 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 E+ T+ I H RPY++ + D + L+FF + E ++ G+ Sbjct: 58 REVVPPATATVEVEIGAHHPPS-GPSRPYRVTVRDAETDFQLVFFRARGEWMRKQLPTGQ 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+GK++ MVHP +I ++ P E VY L G++ L + AL R Sbjct: 117 RRIVSGKVELFDGIAQMVHPDHIVTRAEAEALPSYEPVYPLSGGVTQKLMWRATRSALER 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 P L EWI+ L+ ++ +PS A + H P T PAR RLAYDE LA QI L Sbjct: 177 APRLAEWIDPGLMLREGWPSWHAALHAAHAPASGAALAPTDPARRRLAYDEFLAHQITLA 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R ++ G +G + +++L +P++PT +Q AI +I DM+ + RM R+LQGD Sbjct: 237 LARASMRRGRGRATAGDGALRERVLAALPYAPTGAQTRAISEIAADMAAETRMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVAL+A+ AVEAGGQ V+MAP ILA+QH+E ++ + I +E++TG Sbjct: 297 VGAGKTLVALMALLVAVEAGGQGVMMAPTEILARQHHEGLRPLAASAGIRLELLTGRDKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 R L +A G+ +++GTHA+FQ + + L L +VDEQHRFGV QR++L K Sbjct: 357 RVRDDKLTALAAGEIDVLVGTHAVFQKDVTFADLRLAVVDEQHRFGVAQRMELGAKGARA 416 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L GD+D+S + EKPAGR PIKT +I RIDEV+ L+ L+E Sbjct: 417 DVLVMTATPIPRSLSLAQYGDMDVSILDEKPAGRLPIKTSMISAGRIDEVVVSLRRALAE 476 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540 G++AYW+CP ++E + S + R L + ++HG+M K++ M F G Sbjct: 477 GRRAYWVCPLVDESEVSELTAAEARHKMLRAALGEGVVTLVHGQMPPAQKDAAMADFAAG 536 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L+ATTVIEVG+DV +ASI++IE AE FGLAQLHQLRGRVGRG S+C+LLY PPL Sbjct: 537 RAQVLVATTVIEVGVDVPEASIMVIEGAESFGLAQLHQLRGRVGRGAAASTCLLLYRPPL 596 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S+ RL +L+ TEDGF IAEEDL R G+++G QSG+P+F I E +L+ +A+ Sbjct: 597 SETGRRRLEILRETEDGFRIAEEDLAMRGAGDLIGTAQSGLPRFRIGDVERQAALMAVAQ 656 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L DPDL+S RGQ++R+LL+L + ++A + I G Sbjct: 657 SDARKLLHDDPDLSSERGQAVRMLLWLMEQDKAIRLITVG 696 >gi|316934179|ref|YP_004109161.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315601893|gb|ADU44428.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris DX-1] Length = 700 Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust. Identities = 311/702 (44%), Positives = 443/702 (63%), Gaps = 4/702 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP+ LNPLFAP+++ GVG K +++ + R DLL + P+S IDR RPK Sbjct: 1 MRPALLNPLFAPVTSLSGVGPKQDKLFRYLLD--RDDTPRLADLLLHLPTSVIDRRARPK 58 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I + +VT+ + +H + + R PY + +D TG++ L FF K + ++ + Sbjct: 59 IRDAVPGTVVTLEVTVDRHRAPPPGRSRAPYLVYASDDTGDVVLTFFRAKPDYVQKLLPV 118 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G K V+G + + +VHP + P I+ VY L GL++ ++ + +AL Sbjct: 119 GAKRYVSGTGQLYDGTLQIVHPDRVVDEEAFAKLPQIDPVYPLTEGLAIGSLRRAVAQAL 178 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 ++LP LPEWI ++L++ FPS AEA +H P + D P RLAYDELLAGQ+A Sbjct: 179 TKLPALPEWISPEVLRRCRFPSFAEALKHVHIPDQPTDILPDGPYWSRLAYDELLAGQLA 238 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L+R Q ++ G +G++ KI+ +P++ T SQ+ A I +D+ Q RMLR+LQ Sbjct: 239 LALVRAQLRRPAGSRNAGDGRLRHKIIDALPYALTASQQQAAAAIAEDLRQPVRMLRLLQ 298 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT+VAL+A AA EAG QA +MAP ILA+QH + I + + V I+TG Sbjct: 299 GDVGSGKTVVALLAAAAVAEAGKQAALMAPTEILARQHIKTIAPLAERAGMQVAILTGRE 358 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 RR+ LER+A G+ ++GTHAL QD + Y L L +VDEQHRFGV++RL LT K Sbjct: 359 KGKERREILERLAAGEIDFLVGTHALIQDDVIYKSLALAVVDEQHRFGVRERLALTSKGA 418 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 VL+++ATPIPRTLVLT GD+D+S++ EKPAGR+PI T + R+ EVI+ + + Sbjct: 419 DVDVLVLSATPIPRTLVLTYFGDMDVSELREKPAGRQPIDTRTLSDTRLPEVIDGIGRAI 478 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538 + GK+ YWICP +EE + +R+ SL + F + ++HGRM DK+ VM F Sbjct: 479 AAGKRVYWICPLVEESENVKLTDAEQRYESLRQRFGDHQVGLVHGRMRGSDKDHVMGQFA 538 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G +L+ATTV+EVG+DV +A+I++IENAE FGLAQLHQLRGRVGRG + S+C+LLY Sbjct: 539 RGEISVLVATTVVEVGVDVPEATIMVIENAERFGLAQLHQLRGRVGRGADASTCLLLYRE 598 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PL + S RL V+++T DGF IAEEDLK R EG++LG +QSG+P + IA+ E+H L+ Sbjct: 599 PLGELSGARLRVIRDTTDGFRIAEEDLKLRGEGDVLGTRQSGLPGYRIARSEVHAQLITQ 658 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 AR +A IL +P L G+++R LLYLY+ +EA + AG Sbjct: 659 ARDEALRILKDNPKLEGPSGEALRCLLYLYERDEAIPLLGAG 700 >gi|114570037|ref|YP_756717.1| ATP-dependent DNA helicase RecG [Maricaulis maris MCS10] gi|114340499|gb|ABI65779.1| ATP-dependent DNA helicase RecG [Maricaulis maris MCS10] Length = 694 Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust. Identities = 289/701 (41%), Positives = 427/701 (60%), Gaps = 8/701 (1%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP L PLF ++ G+G + + + K+ CG R D+LF P +DR R Sbjct: 1 MRPEILFPLFQDVTKLPGIGPRLATLVEKV--CGG----RIRDVLFTPPVGLVDRTRRVT 54 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 I++ IVT+T + H Q Q + PYK+ L D TG + L+FF+ + + L + EG Sbjct: 55 ITDAPTGEIVTLTATVETHIPAQRQGQ-PYKVRLRDETGFLHLIFFHARRDYLTKLLPEG 113 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 ++GK ++ + I +VHP + + L+E VY L GL+ + +K + +L+ Sbjct: 114 ETRVISGKAERFGSEIQIVHPDLVITEDEASEMALVEPVYPLTAGLTAKVMRKAVAGSLT 173 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 +P LPEWI DL +PS A IH P+ A + +P R+RLA+DE+ A Q+AL Sbjct: 174 FVPELPEWIPGDLRGSHGWPSFKPALKAIHAPQNASGLDAGAPERQRLAFDEIFARQLAL 233 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 ++R + + G P+ + + +L PF PT +Q A ++I DM RM R+L G Sbjct: 234 QIVRAHRRAQSGRPLAGSDEAVRVVLDAAPFKPTGAQIRAFEEIRTDMQSDARMTRLLHG 293 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVG+GKT VA +A A A AG Q IMAP ILA+QH + + + + + V +TG Sbjct: 294 DVGAGKTFVAALAAAHAAGAGVQTAIMAPTEILARQHEKTLSQMLEPAGLSVIALTGRDK 353 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 R LER+A+G+ I+ GTHALFQD I++ L LV++DEQHRFGV R++LT K Sbjct: 354 GKARAALLERMANGKVDIVCGTHALFQDGIEFADLGLVVIDEQHRFGVSDRMRLTSKGQR 413 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 P L+MTATPIPRTL L GD+D+S++ EKPAGR P T ++ + R+DEV+E ++ + Sbjct: 414 PDTLVMTATPIPRTLSLAVYGDLDVSRLDEKPAGRIPPDTRLVSMERLDEVVEGVRRAIG 473 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKN 539 G + YW+CP +EE + S + +R+ L + ++HGRM +KE + F+ Sbjct: 474 RGDRVYWVCPLVEESEMSELSAAEDRWRHLRAVLGDDRVGLLHGRMKPAEKEDIATRFRA 533 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G +L+ATTVIEVG+D DA+++IIE+AE FGLAQLHQLRGRVGRG++ SSC+LLY P Sbjct: 534 GEMDVLVATTVIEVGVDAPDATVMIIEHAERFGLAQLHQLRGRVGRGDKPSSCLLLYKAP 593 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 L + + RL +++ T+DGFLIAEED + R G+ LG++QSG+P+F +A E H L+E+A Sbjct: 594 LGETARARLEMMRETDDGFLIAEEDWRLRGAGDPLGLRQSGLPQFRLADLEQHSELIELA 653 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 A+ I+ QDPDL G ++R LLYL+ +++ +F+R+G Sbjct: 654 NDHARLIVHQDPDLKGDSGDALRTLLYLFDHDQGVRFLRSG 694 >gi|85717291|ref|ZP_01048245.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A] gi|85695880|gb|EAQ33784.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A] Length = 699 Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust. Identities = 300/701 (42%), Positives = 437/701 (62%), Gaps = 3/701 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP LNPLFAP+++ GVG + ++ G + R IDLLF+ P+S IDR RP+ Sbjct: 1 MRPPLLNPLFAPVTSLSGVGPRQDKLFRYLL--GRQDTPRLIDLLFHLPASVIDRRARPR 58 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I + +VT+ + +H + R P+ + +D TG++ L +F + ++ + Sbjct: 59 IRDAVPGTVVTLEVTVDRHRPAPPGRSRAPHLVYASDETGDVVLTYFRAQPGYVEKLLPV 118 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G K V+G ++ + +VHP + S I+ VY L GL++ ++ I +AL Sbjct: 119 GSKRYVSGTVQMFDGALQIVHPDRVVDESGLAALSAIDPVYPLTEGLALGSLRRAIAQAL 178 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 ++PVLPEWI+ +L++ FPS+ +A +H P + D P RLA+DELLAGQ+A Sbjct: 179 QKMPVLPEWIDPKILRRCGFPSLEQAIRRVHAPLELADILPEGPFWSRLAFDELLAGQLA 238 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L+R Q ++ G +G + I+ +P++ T SQ A+ I +D+ Q RMLR+LQ Sbjct: 239 LALVRAQLRRPAGNRHAGDGHLRNTIIDALPYALTASQRQAVAAISEDLRQPVRMLRLLQ 298 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT+VAL+A A EAG Q +MAP +L +QH + I + V I+TG Sbjct: 299 GDVGSGKTVVALLAAGAVAEAGKQTALMAPTEVLVRQHIKTIAPLADRAGLRVAILTGRE 358 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 RR+ R+A G +I+GTHAL QD + + L L +VDEQHRFGV+QRL LT K Sbjct: 359 KGKERREITARLARGDIDLIVGTHALIQDDVTFRSLALAVVDEQHRFGVRQRLALTAKGE 418 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 A VL+++ATPIPRTLVLT GD+D+S++ EKPAGR PI T + R++EV++ + + Sbjct: 419 AVDVLVLSATPIPRTLVLTYFGDMDVSELREKPAGRLPIDTRAVSDRRLNEVVDAVGRAV 478 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 G+ AYWICP +EE + +RF SL F + ++HG+M +K+ VM F + Sbjct: 479 KAGRLAYWICPLVEESDAVDLSDAEQRFQSLKARFGDRVGLVHGKMRGPEKDRVMAQFAS 538 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G LL+ATTV+EVG+DV A++++IENAE FGLAQLHQLRGR+GRG E S+C+LLY P Sbjct: 539 GEINLLVATTVVEVGVDVPAATVMVIENAERFGLAQLHQLRGRIGRGSEPSTCLLLYREP 598 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 L + S RL V++ T DGF IAEEDLK R EG++LG +QSG+P + IA+ ++H L+ +A Sbjct: 599 LGEMSAARLRVIRETTDGFRIAEEDLKLRGEGDVLGTRQSGLPGYRIARSDVHAQLITLA 658 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 R +A IL Q+P+LT G+++R LLYL++ +EA + AG Sbjct: 659 RDEALRILKQNPNLTGAHGEALRCLLYLFERDEALPLLGAG 699 >gi|83858280|ref|ZP_00951802.1| RecG, ATP-dependent DNA helicase [Oceanicaulis alexandrii HTCC2633] gi|83853103|gb|EAP90955.1| RecG, ATP-dependent DNA helicase [Oceanicaulis alexandrii HTCC2633] Length = 697 Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust. Identities = 293/704 (41%), Positives = 439/704 (62%), Gaps = 11/704 (1%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP L PLFA L+T +GVG + + + K+ R DL+F P+ +DR +R Sbjct: 1 MRPQSLFPLFADLTTLKGVGPRLAALMEKVAG------PRVKDLVFTAPTGLVDRTHRVS 54 Query: 61 ISEISE---ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVF 117 IS+ + + +VTI + H K+ PYK+ + D TG + L+FF K++ L+ + Sbjct: 55 ISDAGDAGAQTLVTIEAEVEAHIPRPTMKQ-PYKVRMRDETGWLHLIFFNAKSDYLRRML 113 Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177 EG + V+GK ++ + I +VHP I + + L++ VY L GLS+++ +K + E Sbjct: 114 PEGSRRIVSGKAERFASEIQIVHPDLIADPKEVEDADLLQPVYPLTAGLSINVMRKAMRE 173 Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237 ALS LP LPEWI+ L ++ + EA +H P+ D E ++ R+RLA+DEL A Q Sbjct: 174 ALSTLPDLPEWIDAPLKAREGWLGWREALLELHAPQSGLDLEPSALVRKRLAFDELFAHQ 233 Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 +AL L R+ K G P++ +G+I K+L + PF+PT +Q A + DM RM+R+ Sbjct: 234 LALKLARRDRKARKGRPLSGDGRIVVKVLEHAPFTPTGAQMRAFEACKTDMDSSQRMMRL 293 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 + GDVGSGKT VA + A A EAG Q +MAP I+A+QH + + + + V +TG Sbjct: 294 VHGDVGSGKTFVAALCAAHAAEAGVQTALMAPTEIVARQHAKVLTALLEPAGVSVVALTG 353 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 R++ +IA G A +I GTHALFQDS+++ L V++DEQHRFGV R KLT K Sbjct: 354 RDKGKPRKEIEAQIASGDAQVICGTHALFQDSVEFSDLGFVVIDEQHRFGVSDRRKLTMK 413 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 AP VL M+ATPIPRTL L + GD+D+S++ EKPAGR P T ++ R+ E++E LK Sbjct: 414 GRAPDVLAMSATPIPRTLTLAAFGDLDVSRLDEKPAGRIPPDTRVVSGERLHEIVEGLKR 473 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDS 536 LS+G++AYW+CP +E+ S+ + R + L E + I ++HGRM DK+ + Sbjct: 474 ALSKGERAYWVCPLVEDSDVSDLAAAEARHHMLSEMLPEARIGLVHGRMPARDKQKAAED 533 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F+ G +L+ATTVIEVG+D DA+I++IE+AE FGLAQLHQLRGRVGRG++ S+C+LLY Sbjct: 534 FRAGEIDVLVATTVIEVGVDAPDATIMVIEHAERFGLAQLHQLRGRVGRGDKPSTCLLLY 593 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 H L + + RL ++++++DGF+IAEED + R G+ LG+KQSG+P + IA H LL Sbjct: 594 HGQLGETARARLEIMRSSDDGFVIAEEDWRLRGSGDPLGLKQSGLPDYRIADLAAHADLL 653 Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 E+A A++ ++ RG+++R LLYL++ +E + +R+G Sbjct: 654 ELASDAAQYETAREEVFAGERGEALRTLLYLFERDEGVRLMRSG 697 >gi|298291679|ref|YP_003693618.1| DEAD/DEAH box helicase [Starkeya novella DSM 506] gi|296928190|gb|ADH88999.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506] Length = 694 Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust. Identities = 299/702 (42%), Positives = 436/702 (62%), Gaps = 11/702 (1%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 +RP LNP FA ++ G+G K + ++++ G E R +DLL + P+S IDR RP Sbjct: 2 LRPDLLNPYFASITGLPGIGPKLAKPFNRLL--GREGEARVLDLLMHLPASTIDRRARPT 59 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 +S++ + +VT+ + +H R PY++ +D TG+I L +F ++ + G Sbjct: 60 LSQVVPDTVVTLEIVVDRHVPTPRGSRAPYRVYAHDETGDIMLAYFKADRSWMERLLPVG 119 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 ++G + M HP + + P IE VY L GL ++ + AL+ Sbjct: 120 ETRWISGTVTLYDGMAQMTHPDRVVDAAGLAKLPPIEPVYPLVEGLGHGHVRRAVEAALA 179 Query: 181 RLPVLPEWIEKDLLQKKSFPSIA--EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 + LPEW + P I A +H P+ D PA RLAYDELLAGQ+ Sbjct: 180 QTAELPEW-------QGEAPGIGFHAALRKVHQPQDTLDASPAGPAWRRLAYDELLAGQL 232 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 AL L+R + K++G P +G ++++I +PFS T SQ A+K I D++ ++RMLR+L Sbjct: 233 ALALVRARTTKQVGRPSVGDGSLSRRIEAALPFSLTGSQVEALKAIRADIASQDRMLRLL 292 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKT+VAL+A A+ +E G QA +MAP ILA+QH + I+ Q + + ++TG Sbjct: 293 QGDVGSGKTVVALLAAASVIETGRQAALMAPTEILARQHMKTIEPLAQAAGLRLALLTGR 352 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R L +A+G+ ++IGTHALFQ+ + + L L IVDEQHRFGV QRL L K Sbjct: 353 EKGRAREALLTALANGEIDLVIGTHALFQEGVAFRDLALAIVDEQHRFGVHQRLALAAKG 412 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 A VL+MTATPIPRTLVLT GD+D S++ EKPAGRKPI T IP++RIDEV+ L Sbjct: 413 EAVDVLVMTATPIPRTLVLTYFGDMDSSELREKPAGRKPIDTRAIPLDRIDEVVASLGRA 472 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 L+EG++AYWICP +EE + S+ + R L F + + ++HG+M +K++ M +F Sbjct: 473 LAEGRRAYWICPLVEESENSDLAAAEARAGELRAWFGNRVGLVHGKMKGAEKDAAMAAFA 532 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G ++L+ATTV+EVG+DV +ASII+IE+AE FGLAQLHQLRGRVGRG+ S+C+LLY Sbjct: 533 AGETQILVATTVVEVGVDVPEASIIVIEHAERFGLAQLHQLRGRVGRGDAASTCLLLYRR 592 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PL + + R+ L+ +EDGF +AE+DLK R EG++LG +QSG P F +A+ E+H LLE Sbjct: 593 PLGEIARQRIEALRESEDGFFLAEQDLKLRGEGDVLGTRQSGFPGFRLARLEVHGDLLER 652 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 AR++A + D DL G S+R+LL++++ + A + + AG Sbjct: 653 ARREATATVKNDSDLIGPNGPSLRLLLHIFERDVAVKLLNAG 694 >gi|294083795|ref|YP_003550552.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292663367|gb|ADE38468.1| DEAD/DEAH box helicase domain protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 696 Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust. Identities = 289/702 (41%), Positives = 435/702 (61%), Gaps = 14/702 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L LFA ++ GVG K + L K + + ID+L + P + IDR +P + Sbjct: 6 RPQELFQLFAATTSLPGVGAKLAAILEKRVG------SYVIDVLRHLPIAIIDRSQKPPL 59 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + + I T + +H RRP+++ + TG I L+FF+ + + ++ + G Sbjct: 60 DAVIDGAIATFDIIVVKHDKPPRGVRRPWRVFCQNDTGSIELVFFHARDDYIQRLLPVGE 119 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + ++G+ + NR+ M HP Y+ + + P IE VY L GL+ + ++ I AL+ Sbjct: 120 RRIISGRTEIFNNRVQMAHPDYVVKPDEMASMPEIEPVYPLTAGLTPKVLRRAITAALAT 179 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 +P LPEWI ++ ++P A A +H P+ D +PAR RLA+DELLA QIAL Sbjct: 180 IPTLPEWIPPSIMATNNWPDFASAMRTVHAPQNEADLLPNNPARARLAFDELLANQIALN 239 Query: 242 LMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 ++R+Q + G G + + ++ N+PF+ TK+Q +AI +I D RMLR+LQG Sbjct: 240 MVRQQAADTVPGRIFAGTGTLTRALMDNLPFALTKAQTNAIAEIKSDQESGKRMLRMLQG 299 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG-NM 359 DVGSGKTLVAL AM VE+G QA ++ P +LA+QHY+ + K ++ G Sbjct: 300 DVGSGKTLVALAAMLHVVESGAQAALLVPTEVLARQHYQSLNKMLAPIGKSASLLLGQGR 359 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + R+ L +A G I++GTHAL +++ + L L +VDEQHRFGV+QRL L QK Sbjct: 360 TGSGRKDTLSGLADGTIDIVVGTHALLSENVAFADLGLAVVDEQHRFGVRQRLILGQKGN 419 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 VL+MTATPIPR+L +T+ GD++ S++ EKPAGR I T ++P +R+D+VI+ ++ L Sbjct: 420 GVDVLVMTATPIPRSLAMTAYGDLEQSRLNEKPAGRLAIDTRVMPNDRLDQVIDGIRRAL 479 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538 GK+AYWICP +EE + + + +RF SL + +A+ HG+M +++ M +F+ Sbjct: 480 DAGKRAYWICPLVEESDKLDIAAAEDRFASLVRALPAHKVALAHGKMKAPERDEAMQAFR 539 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 +G+ +LL+ATTV+EVG+DV +ASI+IIE+AE FGLAQLHQLRGRVGRG + SSCIL+Y P Sbjct: 540 DGSAQLLVATTVVEVGVDVPEASIMIIEHAERFGLAQLHQLRGRVGRGADKSSCILVYAP 599 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 P+S S TRL+V+++TEDGF+IAEEDLK R GE LG +QSG+P+F++A H LL + Sbjct: 600 PISDTSKTRLTVMRDTEDGFVIAEEDLKLRGPGEFLGQRQSGVPEFILADLGAHADLLSL 659 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 AR +A+ + T LT +LL L++ + A +++ AG Sbjct: 660 ARTEARRMATDGTALTYS-----DMLLSLFERDSAVRYLAAG 696 >gi|126729670|ref|ZP_01745483.1| ATP-dependent DNA helicase RecG [Sagittula stellata E-37] gi|126709789|gb|EBA08842.1| ATP-dependent DNA helicase RecG [Sagittula stellata E-37] Length = 696 Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust. Identities = 290/700 (41%), Positives = 430/700 (61%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLFA L G+G K + L+ A DLL+ P S DR R + Sbjct: 4 RPEPLWPLFADLKGLDGIGPKTAQTLA------GAGVEAPRDLLYTLPYSVTDRRARDTV 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 +T+ I +H + + Y+I ++D L+FF +E + +F G+ Sbjct: 58 QGADLPATLTVEVLIGRHWPPR-TRGGAYRIEVDDAKVRFQLVFFRGNSEYQQKLFPTGQ 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+G+++ MVHP ++ + + P E VY L ++ L + I + L+R Sbjct: 117 RRLVSGRVELFDGVPQMVHPDHVLPVDEADSLPSFEPVYHLTGNVTQKLMVRAIADGLTR 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 +P L EWI+ ++K+ +P AEA +H P +D T+PAR RLAYDEL+A Q+ L Sbjct: 177 VPDLEEWIDAAQMKKEGWPGWAEALARVHAPDGPEDMSPTAPARARLAYDELMAHQLTLA 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R +K GI +G++ ++L +P+ PT +Q AI +IL DM+ RM R+LQGD Sbjct: 237 LARAARRKRRGIETKGDGRLQARVLAALPYQPTGAQTRAIGEILADMAHPERMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVAL+A+ AVEAGGQ V+MAP ILA+QH + ++ ++ +++EI+TG Sbjct: 297 VGAGKTLVALMALLNAVEAGGQGVMMAPTEILARQHLDSLRPLAESAGVVLEILTGRDKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 A R L +A G I++GTHA+FQ + + L L IVDEQHRFGV+QRL+L +K Sbjct: 357 AERAAKLAALAQGDIQILVGTHAVFQADVVFADLRLAIVDEQHRFGVRQRLELGKKGAGA 416 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L+ GD+D+S + EKP GR P+KT ++ ++ EV++ L+ ++E Sbjct: 417 DVLVMTATPIPRSLALSQYGDMDVSILDEKPPGRTPVKTALLSTEKMAEVVDHLRKAVAE 476 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540 G++AYW+CP +EE + S+ + RF L + ++HG+M +K++ M F +G Sbjct: 477 GRQAYWVCPLVEESESSDLIAAEARFQRLRAALGEGVVGLVHGQMPPAEKDAAMARFVSG 536 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L+ATTVIEVG++V +ASI++IE AE FG+AQLHQLRGRVGRG S+C+L+Y PPL Sbjct: 537 ETSVLVATTVIEVGVNVPNASIMVIERAEIFGIAQLHQLRGRVGRGTAASTCLLMYQPPL 596 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S+ RL+ L+ TEDGF IAE DL+ R G+++G QSG+PKF +A E +L+E+A+ Sbjct: 597 SETGMKRLTTLRETEDGFRIAEVDLEMRGAGDLIGTAQSGLPKFRVADLERQAALMEVAQ 656 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L DP L S RGQ+ R LL+L + +EA + I G Sbjct: 657 SDARRLLADDPTLESPRGQAARSLLWLMRQDEAIRLIEVG 696 >gi|254451504|ref|ZP_05064941.1| ATP-dependent DNA helicase RecG [Octadecabacter antarcticus 238] gi|198265910|gb|EDY90180.1| ATP-dependent DNA helicase RecG [Octadecabacter antarcticus 238] Length = 690 Score = 568 bits (1465), Expect = e-160, Method: Compositional matrix adjust. Identities = 285/697 (40%), Positives = 424/697 (60%), Gaps = 8/697 (1%) Query: 5 FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64 L PLF L + G+G K + + + N + R DLLF P S +DR R I ++ Sbjct: 1 MLWPLFGSLESLDGIGPKSA----QALIAANIEKPR--DLLFTLPHSGVDRRRRDSILDV 54 Query: 65 SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124 + T+ I QH++ RPY++ + D L+FF +E L+ G++ Sbjct: 55 HAPAVCTVEVTIGQHTAPS-SPGRPYRVTVEDQRTTFQLVFFRSHSEYLRKQLPTGQRRV 113 Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184 V+GKI+ MVHP +I + PL E VY L ++ K + L ++P Sbjct: 114 VSGKIELFDGVGQMVHPDHILTPDEAEQIPLFEPVYPLTGTMTQKAMFKATADLLGQVPG 173 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 L EWI+ L ++ +P A + H P + + TS AR+RLAYDE+LA Q+ L L R Sbjct: 174 LAEWIDPALRAREGWPDWGAALALAHRPMSSAELSSTSAARQRLAYDEVLAHQLTLALAR 233 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 Q ++ G +G K+L + FSPT +Q A +I +DM++ RM R+LQGDVGS Sbjct: 234 AQQRRGKGRVTAGDGARQAKVLAALGFSPTGAQIRATAEIAEDMAKPYRMNRLLQGDVGS 293 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKTLVAL+++ AVEAGGQ V+MAP ILA+QH E ++ + +++E++TG R Sbjct: 294 GKTLVALMSLLNAVEAGGQGVMMAPTEILARQHLEGLRPLAEGAGVVLELLTGRDKGGER 353 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424 R LE +A G I++GTHA+FQ + + L L I+DEQHRFGV QR++L K + VL Sbjct: 354 RAKLEALAAGDIQILVGTHAVFQKDVVFADLRLAIIDEQHRFGVAQRMELGAKGASVDVL 413 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 +MTATPIPR+L L GD+D+S + EKP GR P+ T ++ +++D+VIERL+ +++G++ Sbjct: 414 VMTATPIPRSLALAQYGDMDVSVLDEKPPGRSPVTTALVATSKMDQVIERLRAAVADGRQ 473 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCK 543 YW+CP +EE + S+ + +RF L + ++HG+M +K++ M F +G K Sbjct: 474 CYWVCPLVEESEVSDMTAAEDRFKRLRAALGEDVVGLVHGQMPPANKDAAMRKFVSGETK 533 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG S+C+L+Y PLS++ Sbjct: 534 VLVATTVIEVGVNVPNASIMVIERAESFGLAQLHQLRGRVGRGATKSTCLLMYQAPLSES 593 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 RL +++ TEDGF I+EEDL R G+++G QSG+P F IA E +L+ +A+ DA Sbjct: 594 GRQRLEIMRETEDGFRISEEDLAMRGAGDVIGTAQSGLPIFRIADLERQTALMALAQTDA 653 Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 + +L DP L S RG + R+LL+L + ++A + I G Sbjct: 654 RKLLLDDPKLESARGTAARVLLWLMEQDKAIRLISVG 690 >gi|27379714|ref|NP_771243.1| ATP-dependent DNA helicase [Bradyrhizobium japonicum USDA 110] gi|27352866|dbj|BAC49868.1| ATP-dependent DNA helicase [Bradyrhizobium japonicum USDA 110] Length = 702 Score = 568 bits (1465), Expect = e-160, Method: Compositional matrix adjust. Identities = 313/705 (44%), Positives = 442/705 (62%), Gaps = 8/705 (1%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANET-RFIDLLFYHPSSFIDRHYRP 59 MRPS LNPLFAP+++ GVG K L +++ NET R +DLL + PS IDR RP Sbjct: 1 MRPSLLNPLFAPVTSLPGVGPKQDKLLQYLLS---RNETPRLVDLLLHLPSQVIDRRARP 57 Query: 60 KISEISEERIVTITGYISQHSSFQLQKRRP-YKILLNDGTGEITLLFFYRKTEMLKNVFF 118 KI + + +VT+ + +H + R Y + +D TG++ L FF K ++ + Sbjct: 58 KIRDAVQGTMVTLEVTVDRHRPPPPRNARAPYLVYASDETGDVVLTFFRAKPGYVEKLLP 117 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 G K V+G ++ +VHP + I+ VY L GL++ ++ I +A Sbjct: 118 VGEKRYVSGTLQMYDGIPQIVHPDRVLDEEAISKLSGIDPVYPLTEGLALGSLRRAIAQA 177 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L +LP LPEWI +++++ FP IAEA +H P + D P RLA+DELLAGQ+ Sbjct: 178 LQKLPALPEWISPEVMRRCHFPPIAEALTRVHQPVELTDILPDRPFWSRLAFDELLAGQL 237 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 AL L+R Q ++ GI +G + KI+ +P++ T SQ A I D+ Q RMLR+L Sbjct: 238 ALALIRAQLRRPAGIRNAGDGHLRNKIIDALPYALTLSQRDAAAAIASDLQQPVRMLRLL 297 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKT+VAL+A AA E G QA +MAP ILA+QH + I + + V I+TG Sbjct: 298 QGDVGSGKTVVALLAAAAVAEVGKQAALMAPTEILARQHIKTIAPLAERAGLRVAILTGR 357 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 RR+ + ++A G+ +++GTHAL QD + + L L +VDEQHRFGV++RL LT K Sbjct: 358 EKGKERREIIAQLAEGEIDLLVGTHALIQDDVIFRDLALAVVDEQHRFGVRERLALTSKG 417 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 A VL+++ATPIPRTLVLT GD+DIS++ EKPAGR+PI+T I ++R++EV + + Sbjct: 418 EAVDVLVLSATPIPRTLVLTYFGDMDISELREKPAGRQPIETRTISMSRLNEVTDSIGRA 477 Query: 479 LSEGKKAYWICPQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 L GK YWICP +EE + + + +RF +L + F + ++HG+M +K+ VM Sbjct: 478 LQAGKLVYWICPLVEESEAEGTEHLTNATKRFENLQKRFGDRVGLVHGQMKGTEKDRVMG 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F LL+ATTV+EVG+DV A+I++IENAE FGLAQLHQLRGR+GRG E S+C+LL Sbjct: 538 QFAAHEIGLLVATTVVEVGVDVPAATIMVIENAERFGLAQLHQLRGRIGRGSEASTCLLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PL + S RL V++ T DGF IAEEDLK R EG++LG++QSG+P + IA+ E+H L Sbjct: 598 YSEPLGEMSKARLKVIRETTDGFRIAEEDLKLRGEGDVLGVRQSGLPGYRIARSEVHGQL 657 Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 + AR +A IL DP L RG+++R LLYLY+ +EA I AG Sbjct: 658 ITQARDEALRILKDDPKLKGERGEALRCLLYLYERDEAIPLIGAG 702 >gi|159044059|ref|YP_001532853.1| ATP-dependent DNA helicase RecG [Dinoroseobacter shibae DFL 12] gi|157911819|gb|ABV93252.1| ATP-dependent DNA helicase [Dinoroseobacter shibae DFL 12] Length = 696 Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust. Identities = 287/700 (41%), Positives = 433/700 (61%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP+ L PLFA L T G+GKK + L+ + + R DL+F PSS I+R + Sbjct: 4 RPAALFPLFAELETLPGIGKKTAQTLAHM------DIARPRDLIFTLPSSGIERRLVDTV 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 ++T+ +++H K RPY+I + D ITL++F+ + + L + G Sbjct: 58 QTGPFPSVMTVPVTVTRHLPPS-GKGRPYRIEVADAATTITLVYFHARGDYLMKLLPPGA 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + ++G+++ + M HP ++ ++ E VY L G++ +K + AL R Sbjct: 117 RRIISGRVELYDGQAQMPHPDHVLTEAEAETLGGFEPVYPLTAGITQKTMQKAVAGALDR 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 +P L EW + L+ ++ +P A A H P+ K+ +PAR RLAYDELLA Q L Sbjct: 177 VPDLAEWADPALVAQEGWPDFASALASAHAPQSMKELGPDTPARRRLAYDELLAHQTTLA 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R ++ G + +G+ +L +P++PT +Q+ I +I +D++ +RM R+LQGD Sbjct: 237 LARAHRRRAPGRRLTGDGRRVGPVLAALPYTPTGAQQRVISEITEDLAAPHRMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVAL+AM AVEAG QAV+MAP ILA+QH + + ++VE++TG Sbjct: 297 VGAGKTLVALVAMLLAVEAGTQAVMMAPTEILARQHLAALLPLAEAAGVVVEVLTGRDKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 R L +A G HI++GTHA+FQD + ++ L L ++DEQHRFGV++R++L K A Sbjct: 357 RERAAKLAALAAGDIHILVGTHAVFQDDVAFHDLGLAVIDEQHRFGVRERMRLGAKGAAV 416 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L + GD+D+S + EKP GR P+KT ++ +R+DE++ L LSE Sbjct: 417 DVLVMTATPIPRSLALVTYGDMDVSILDEKPPGRTPVKTALVSADRLDELLAHLDAALSE 476 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540 G++ YW+CP +EE + + ERF L F + ++HG+M +K++ M F G Sbjct: 477 GRQVYWVCPLVEESETLALTAAEERFKHLRARFGEGRVGLVHGQMPVAEKDAAMADFVAG 536 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +LL+ATTVIEVG+DV +ASI++IE AEHFGLAQLHQLRGRVGRG SSC+LLY PPL Sbjct: 537 ETRLLVATTVIEVGVDVPNASIMVIEGAEHFGLAQLHQLRGRVGRGSTASSCLLLYAPPL 596 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + + RL +++ TEDGF I+E D++ R G+++G QSG+P+F IA E L+ +A+ Sbjct: 597 GETATKRLKLMRETEDGFRISEADMEMRGAGDLIGTAQSGLPRFRIADLERQAGLMAMAQ 656 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L +DP L S RG+++R+LL+L +EA + I G Sbjct: 657 SDARALLAKDPKLDSPRGEAVRMLLWLTGQDEAIRLISVG 696 >gi|163736312|ref|ZP_02143731.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis BS107] gi|161390182|gb|EDQ14532.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis BS107] Length = 696 Score = 567 bits (1460), Expect = e-159, Method: Compositional matrix adjust. Identities = 293/700 (41%), Positives = 423/700 (60%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLFA L T +G+G K + ++I + R DLL+ P S +DR R I Sbjct: 4 RPEILFPLFAGLETLQGIGPKTAQHFAQI----DIETPR--DLLYSLPYSIVDRRRRDSI 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + + T+ I H + K Y+I ++D E L+FF+ ++ L+ EG Sbjct: 58 RGLDYPTVATVEVTIGAHRPAR-NKGGAYRIHVSDAEEEFQLVFFHGRSRYLEAQLPEGA 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+GK++ MVHP ++ ++ + P E VY L G+S K ALSR Sbjct: 117 RRVVSGKLELFDGMAQMVHPDHMVPVAEAGDIPEFEPVYHLTHGVSQKTMFKAAQSALSR 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 LP L EW + ++K+ +P+ EA H P +P R RLAYDEL A Q+ L Sbjct: 177 LPELQEWADPSQVRKEDWPTWQEALVAAHTPDGMDALAAEAPGRTRLAYDELFAHQLTLA 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R + + G G + ++L +P+ PT +Q AI +I DM++ RM R+LQGD Sbjct: 237 LARLRDRALPGRSSLANGTLQSRVLGALPYRPTGAQARAIDEITADMARDARMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVA +A+ AVEAGGQ V+MAP ILA+QH E ++ + +++EI+TG Sbjct: 297 VGAGKTLVAFMALLVAVEAGGQGVMMAPTEILARQHLEALRPLAETAGVVLEILTGRDKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 R +A G I++GTHA+FQ + + L L IVDEQHRFGV+QR++L +K Sbjct: 357 RERAAKCAALARGDIQILVGTHAVFQADVAFQDLRLAIVDEQHRFGVRQRMELAEKGKGA 416 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L LT GD+D+S + EKP GRKP+KT +I R+ EV+ L+ + E Sbjct: 417 DVLVMTATPIPRSLALTQYGDMDVSMLDEKPPGRKPVKTAVISTERMQEVVSHLRGAIDE 476 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540 G++ YW+CP +EE + + + ERF L + ++HG+M +K++ M +F+ G Sbjct: 477 GRQCYWVCPLVEESEVMDLTAAEERFKQLRAVLGEGVVGLVHGQMPAAEKDAAMAAFQAG 536 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 K+L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRGE S+C+LLY PL Sbjct: 537 ETKVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGEAASTCLLLYQAPL 596 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 SK RL +L+ TEDGF IAE DL+ R G+++G QSG+P+F IA + L+ +A+ Sbjct: 597 SKGGQKRLEILRETEDGFRIAETDLEMRGAGDVIGTAQSGLPRFRIADLDRQAGLMAVAQ 656 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L DPDL+S RGQ+ R+LL+L + ++A + I G Sbjct: 657 SDARALLASDPDLSSPRGQAARVLLWLMKQDQAIRLISVG 696 >gi|163741159|ref|ZP_02148551.1| ATP-dependent DNA helicase RecG [Phaeobacter gallaeciensis 2.10] gi|161385512|gb|EDQ09889.1| ATP-dependent DNA helicase RecG [Phaeobacter gallaeciensis 2.10] Length = 696 Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust. Identities = 293/700 (41%), Positives = 423/700 (60%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLFA L T +G+G K + ++I + R DLL+ P S +DR R I Sbjct: 4 RPEILFPLFAGLETLQGIGPKTAQHFAQI----DIETPR--DLLYSLPYSIVDRRRRDSI 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + + T+ I H + K Y+I ++D E L+FF+ ++ L+ EG Sbjct: 58 RGLDYPTVATVEVTIGAHRPAR-NKGGAYRIHVSDAEEEFQLVFFHGRSRYLEAQLPEGA 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+GK++ MVHP ++ ++ + P E VY L G+S K ALSR Sbjct: 117 RRVVSGKLELFDGMAQMVHPDHMVPVAEAGDIPEFEPVYHLTHGVSQKTMFKAAQSALSR 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 LP L EW + ++K+ +P+ EA H P +P R RLAYDEL A Q+ L Sbjct: 177 LPELQEWADPSQIRKEDWPTWQEALVAAHTPDGMDALAAEAPGRTRLAYDELFAHQLTLA 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R + + G G + ++L +P+ PT +Q AI +I DM++ RM R+LQGD Sbjct: 237 LARLRDRALPGRSSLANGTLQSRVLGALPYRPTGAQARAIDEITADMARDARMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVA +A+ AVEAGGQ V+MAP ILA+QH E ++ + +++EI+TG Sbjct: 297 VGAGKTLVAFMALLVAVEAGGQGVMMAPTEILARQHLEALRPLAETAGVVLEILTGRDKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 R +A G I++GTHA+FQ + + L L IVDEQHRFGV+QR++L +K Sbjct: 357 RERAAKCAALARGDIQILVGTHAVFQADVAFQDLRLAIVDEQHRFGVRQRMELAEKGKGA 416 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L LT GD+D+S + EKP GRKP+KT +I R+ EV+ L+ + E Sbjct: 417 DVLVMTATPIPRSLALTQYGDMDVSVLDEKPPGRKPVKTAVISTERMQEVVSHLRGAIDE 476 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540 G++ YW+CP +EE + + + ERF L + ++HG+M +K++ M +F+ G Sbjct: 477 GRQCYWVCPLVEESEVMDLTAAEERFKQLRAVLGEGVVGLVHGQMPAAEKDAAMAAFQAG 536 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 K+L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRGE S+C+LLY PL Sbjct: 537 ETKVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGEAASTCLLLYQAPL 596 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 SK RL +L+ TEDGF IAE DL+ R G+++G QSG+P+F IA + L+ +A+ Sbjct: 597 SKGGQKRLEILRETEDGFRIAETDLEMRGAGDVIGTAQSGLPRFRIADLDRQAGLMAVAQ 656 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L DPDL+S RGQ+ R+LL+L + ++A + I G Sbjct: 657 SDARALLASDPDLSSPRGQAARVLLWLMKQDQAIRLISVG 696 >gi|99081238|ref|YP_613392.1| ATP-dependent DNA helicase RecG [Ruegeria sp. TM1040] gi|99037518|gb|ABF64130.1| DEAD/DEAH box helicase-like protein [Ruegeria sp. TM1040] Length = 696 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 294/700 (42%), Positives = 430/700 (61%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLFA L T +GVG K + +++ + T DLLF P S +DR R I Sbjct: 4 RPEQLFPLFAELETLQGVGPKIAEHFAQL------HITAPRDLLFSLPYSVVDRRRRETI 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + T+ + +H + + Y+I + D E L+FF+ ++ L EG Sbjct: 58 RGLDLPTTATVEVTVGRHRPAR-NRGGAYRIDVTDQETEFQLVFFHGRSRYLTAQLPEGA 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+GK++ MVHP ++ + + P E VY L G++ K + AL+R Sbjct: 117 RRVVSGKLELFDGMAQMVHPEHMLPLEEAGDIPDFEPVYHLTHGITQKTMYKAVQSALAR 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 +P L EW++ K+ +P A + H P +D +PAR RLAYDEL A Q+ L Sbjct: 177 VPDLTEWMDPAQKTKQGWPDWHAAISAAHAPATLEDLGAQAPARARLAYDELFAHQLTLA 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 + R + G G + +K+L +P+ PT +Q AI++I DM + RM R+LQGD Sbjct: 237 IARSVERDLPGRRSVATGTLQRKVLATLPYRPTGAQGRAIEEITADMGSERRMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLV +A+ AVEAGGQ V+MAP ILA+QH E +K ++ +++EI+TG Sbjct: 297 VGAGKTLVGFMALLVAVEAGGQGVMMAPTEILARQHLEGLKPLAEDAGVVLEILTGRDKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 RR LE +A G HI++GTHA+FQ + + L LVIVDEQHRFGV+QR++L +K Sbjct: 357 KDRRAKLESLARGDIHILVGTHAVFQQDVVFDDLRLVIVDEQHRFGVRQRMELAEKGKRA 416 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L LT GD+++S + EKP GRKPIKT I+ R+ EV++ L+ + E Sbjct: 417 DVLVMTATPIPRSLALTQYGDMEVSILDEKPPGRKPIKTAILSTERMSEVVDHLRRAIDE 476 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540 G++ YW+CP +EE + + + ERF L + ++HG+M +K++ M +F+ G Sbjct: 477 GRQCYWVCPLVEESEVMDLTAADERFKHLRAVLGEEVVGLVHGQMPPAEKDAAMLAFQEG 536 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRGE S+C+L+Y PPL Sbjct: 537 RTRVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGEAQSTCLLMYQPPL 596 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 ++ RL VL+ +EDGF+IAE DL+ R G+++G QSG+P+F IA E L+ IA+ Sbjct: 597 TEGGRKRLEVLRESEDGFVIAETDLQMRGAGDVIGTAQSGLPRFHIADLERQSDLMAIAQ 656 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ ++T DPDL+S RG++ R LL+L + +EA + I G Sbjct: 657 SDARALMTSDPDLSSARGRAARTLLWLLRQDEAIRLISVG 696 >gi|254461597|ref|ZP_05075013.1| ATP-dependent DNA helicase RecG [Rhodobacterales bacterium HTCC2083] gi|206678186|gb|EDZ42673.1| ATP-dependent DNA helicase RecG [Rhodobacteraceae bacterium HTCC2083] Length = 696 Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust. Identities = 287/700 (41%), Positives = 423/700 (60%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLFA L++ GVG K + N G + DLLF P S IDR + + Sbjct: 4 RPEVLFPLFAALTSLEGVGPKTAQ------NMGGLGVEKPRDLLFLLPFSGIDRTLKETV 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 +T+ + QH + K Y+I + D L+FF+ + + L + G+ Sbjct: 58 QGADLPATLTVEVEVGQHRPPR-NKGGAYRIDVIDSQIAFQLVFFHARGDYLSKLLPTGQ 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+GK++ MVHP + P E VY L G++ K I AL R Sbjct: 117 RRVVSGKVELFDGLAQMVHPDHTVRVEDAEQIPSFEPVYPLTAGVTQKPLSKSIASALER 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 +P L EWI+ K +P A +H P+ D T PARERLAYDE +A Q+ L Sbjct: 177 VPQLDEWIDSTQKDLKKWPDWQAAIKTVHAPKSIGDLAQTVPARERLAYDEFMAHQLTLG 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R ++ G+ + G + ++L +P+ PT +Q AI +I D++ RM R+LQGD Sbjct: 237 LARANRRRAPGVESHGSGTLRNQVLSGLPYKPTGAQLRAIDEITADLASPQRMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A+ A VEAGGQ V+MAP ILA+QH E ++ ++ +++E++TG Sbjct: 297 VGSGKTLVAFMALLAVVEAGGQGVMMAPTEILARQHLEGLQPLAESAGVVLELLTGRDKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 R L + + I++GTHA+FQ +++ L L IVDEQHRFGV+QRL+L +K Sbjct: 357 REREAKLSALKEKKIQILVGTHAVFQKDVEFSDLRLAIVDEQHRFGVRQRLELGRKGENA 416 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L GD+D+S + EKPAGR+PIKT +I R++EV+ L+ ++E Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPAGRQPIKTALISDERVNEVVSHLRGAINE 476 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA-IIHGRMSDIDKESVMDSFKNG 540 G++AYW+CP + E + S+ + ERF +L + ++HG+M +K++ M F G Sbjct: 477 GRQAYWVCPLVGESEVSDLIAAEERFKTLRALLGDDVVRLVHGQMPPSEKDAAMADFVAG 536 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L+ATTVIEVG++V +A+I++IE AE FGLAQLHQLRGRVGRG S+C+L+Y PL Sbjct: 537 RVQVLVATTVIEVGVNVPNATIMVIERAESFGLAQLHQLRGRVGRGSAASTCLLMYKAPL 596 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S+N RL+VL+ TEDGF I+E DL+ R G+++G QSG+P+F +A E +L+++A+ Sbjct: 597 SENGQKRLTVLRETEDGFQISETDLQMRGAGDLIGTAQSGLPRFRVADLESQTALMDVAQ 656 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L DP LTS RG++ R+LL+L + ++A + I G Sbjct: 657 SDARKLLHDDPKLTSARGKAARVLLWLMEQDQAIRLISVG 696 >gi|92117584|ref|YP_577313.1| DEAD/DEAH box helicase-like [Nitrobacter hamburgensis X14] gi|91800478|gb|ABE62853.1| ATP-dependent DNA helicase RecG [Nitrobacter hamburgensis X14] Length = 699 Score = 565 bits (1456), Expect = e-159, Method: Compositional matrix adjust. Identities = 303/701 (43%), Positives = 439/701 (62%), Gaps = 3/701 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP+ LNPLFA +++ GVG + ++ G R IDLLF+ P S IDR RPK Sbjct: 1 MRPALLNPLFASVTSLSGVGPRQDKLFRYLL--GRDETPRLIDLLFHLPGSVIDRRARPK 58 Query: 61 ISEISEERIVTITGYISQH-SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 + + +VT+ + +H + + R P+ + +D TG++ L +F + ++ + Sbjct: 59 VRDAVPGTVVTLEVTVDRHRPTPSGRSRAPHLVYASDETGDVVLTYFRAQPGYVEKLLPV 118 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G K V+G + + +VHP + + I+ VY L GL++ ++ I AL Sbjct: 119 GTKRYVSGTAQIFDGSLQIVHPDRVVDEAGFAKLSGIDPVYPLTEGLALGSLRRAIAMAL 178 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 RLP+LPEWI D+L++ SFP + EA + +H P + D S RLA+DELLAGQ+A Sbjct: 179 QRLPLLPEWIGPDILRRCSFPPLEEALHRVHVPLELTDILPESRFWSRLAFDELLAGQLA 238 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L+R Q ++ G +G + +I+ +P++ T SQ+ A I D+ Q RMLR+LQ Sbjct: 239 LALVRAQLRRPAGSRHAGDGHLRNRIIDALPYALTASQQQAAAAISDDLRQPVRMLRLLQ 298 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT+VAL+A AA EAG Q +MAP ILA+QH + + + V I+TG Sbjct: 299 GDVGSGKTVVALLAAAAVTEAGKQTALMAPTEILARQHIKTVAPLADRAGLRVAILTGRE 358 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 RR+ + R+A+G +++GTHAL QD + + L L +VDEQHRFGV++RL LT K Sbjct: 359 KGKERREIVARLANGDIDLLVGTHALIQDDVAFKALALAVVDEQHRFGVRERLALTAKGE 418 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 A VL+++ATPIPRTLVLT GD+D+S++ EKPAGR+PI T +P +R++EVIE + + Sbjct: 419 AVDVLVLSATPIPRTLVLTYFGDMDVSELREKPAGRQPIDTRALPDSRLNEVIEAVGRAV 478 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 GK YWICP +EE + +RF+SL F + ++HG+M ++K+ VM F Sbjct: 479 KAGKLVYWICPLVEESDTVDLTDAEQRFDSLKARFGDKVGLVHGKMRGLEKDRVMAQFAA 538 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 LL+ATTV+EVG+DV A++++IENAE FGLAQLHQLRGR+GRG E S+C+LLY P Sbjct: 539 AEINLLVATTVVEVGVDVPAATVMVIENAERFGLAQLHQLRGRIGRGSEPSTCLLLYREP 598 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 L + S RL V++ T DGF IAEEDLK R EG++LG +QSG+P + IA+ ++H L+ A Sbjct: 599 LGEVSAARLRVIRETADGFRIAEEDLKLRGEGDVLGTRQSGLPGYRIARSDVHAQLITQA 658 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 R +A I+ Q+P LT G+++R LLYL++ +EA I AG Sbjct: 659 RDEALRIMKQNPKLTGAHGEALRCLLYLFERDEALPLIGAG 699 >gi|294677202|ref|YP_003577817.1| ATP-dependent DNA helicase RecG [Rhodobacter capsulatus SB 1003] gi|294476022|gb|ADE85410.1| ATP-dependent DNA helicase RecG [Rhodobacter capsulatus SB 1003] Length = 697 Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust. Identities = 290/701 (41%), Positives = 429/701 (61%), Gaps = 9/701 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP+ L PLFA + T G+G K + + N TR D+LF P + IDR I Sbjct: 4 RPAALFPLFAAIETLPGIGAKTAKAME------NLGITRPRDVLFTLPQAVIDRRPVSSI 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEG 120 E++ VT+ + H + + + P ++L+ DG G E L+FF+ + + L+ + + Sbjct: 58 REVTPPLTVTVEVEVLTHMAAR-NRAGPSRVLVRDGAGAEFALVFFHARGDYLEKLLPKA 116 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 + V+G+++ MVHP ++ + P E VY L G++ + K AL+ Sbjct: 117 GRRLVSGRLELFDGFAQMVHPDHVLPLDEVEKLPRFEPVYPLTAGVTQRVMAKAAEGALT 176 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 RLP LPEWI+ L ++ +P A A H P+ + T+PAR+RLAYDEL A Q+ L Sbjct: 177 RLPELPEWIDAALKAREGWPDWAAALRAAHAPQTQAETAVTAPARQRLAYDELFAHQMTL 236 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L R+Q + G G + K+L+++PF PT +Q A ++I DM+ +RM R+LQG Sbjct: 237 ALARRQARHPKGRITEGTGALTAKVLKSLPFQPTGAQLRASREIAADMATPSRMNRLLQG 296 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVG+GKTLVA +A+ AVEAGGQ V+MAP ILA+QH+E + + +E++TG Sbjct: 297 DVGAGKTLVAFLALLTAVEAGGQGVLMAPTEILARQHFEGLGTLAAAAGVRMEVLTGRDK 356 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 A R + L + G+ I++GTHA+FQ + + L LVI+DEQHRFGV QR++L K Sbjct: 357 GAERARKLTDLLEGRIQILLGTHAVFQKDVVFQDLRLVIIDEQHRFGVAQRMELGAKGEM 416 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 VL+MTATPIPR+L L GD+D+S + EKP GR+P+ T +I RI EV+ L ++ Sbjct: 417 ADVLVMTATPIPRSLALAQYGDMDVSLLDEKPPGRQPVTTALISTARIGEVVAHLARAVA 476 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKN 539 EG++AYW+CP +EE + + S ERF L ++ ++HG++ +K++ M F Sbjct: 477 EGRQAYWVCPLVEESERVDLASAEERFAHLRMVLGEGTVGLVHGQLPPAEKDAAMADFVA 536 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G ++L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG S+C++LY P Sbjct: 537 GKTRVLVATTVIEVGVNVPNASIMVIERAETFGLAQLHQLRGRVGRGAAKSTCLMLYQAP 596 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 LS+ RLS+L+++EDGF IAEEDL R G+++G QSG+P+F IA E L+ +A Sbjct: 597 LSEGGERRLSILRDSEDGFRIAEEDLAMRGAGDVIGTAQSGLPRFRIADLERQAGLMALA 656 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 + DA+ +L DP L S RGQ+ R+L++L + + A + I G Sbjct: 657 QSDARVLLAMDPALESPRGQAARMLMWLTEQDRAIRLIEVG 697 >gi|126462049|ref|YP_001043163.1| ATP-dependent DNA helicase RecG [Rhodobacter sphaeroides ATCC 17029] gi|126103713|gb|ABN76391.1| ATP-dependent DNA helicase RecG [Rhodobacter sphaeroides ATCC 17029] Length = 695 Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust. Identities = 294/700 (42%), Positives = 423/700 (60%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLFA L T GVG K + + + TR DLLF P S +DR R I Sbjct: 3 RPEILFPLFADLETLEGVGPKSAKAFAGL------GVTRPKDLLFLLPHSAVDRSRRASI 56 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 ++ T+ + H + +K PY+I + D E TL+FF+ + + L + G Sbjct: 57 RDVLPPVTATVEVTVGAHYPSR-RKGGPYRIAVRDAEAEFTLVFFHARGDYLMKLLPPGE 115 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+G+I+ MVHP ++ + P E VY L GL+ L K AL R Sbjct: 116 QRIVSGRIEVFDGMAQMVHPDHVLPPEEAAALPACEPVYPLTAGLTQKLVAKAASAALLR 175 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 LP L EWI+ L ++ +P A A H P + T+ AR RLAYDEL A Q+ L Sbjct: 176 LPELAEWIDPGLKAREGWPDWAAAVRAAHAPEAPAEVTPTAAARRRLAYDELFAHQLTLT 235 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R ++ G+ G + +++L ++PF+PT +Q A+ +I DM+ RM R+LQGD Sbjct: 236 LARASRRRGRGVASVGTGALQRRVLESLPFAPTAAQTRAVAEIAADMAAPQRMNRLLQGD 295 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVA +A+A AVEAGGQ V+MAP ILA+QH + + I + ++TG Sbjct: 296 VGAGKTLVAFLALAIAVEAGGQGVMMAPTEILARQHLASLAPMAEAAGIRLALLTGRDKG 355 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 A R L +A G+ +++GTHA+FQ + ++ L L IVDEQHRFGV QR++L K A Sbjct: 356 AERAAKLAALASGEIGVLVGTHAVFQKDVIFHDLRLAIVDEQHRFGVAQRMELGAKGAAA 415 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L S GD+D+S + EKP GR P+KT ++ RIDEV+ L ++E Sbjct: 416 DVLVMTATPIPRSLALASYGDMDVSVLDEKPPGRTPVKTALVSCERIDEVVASLAHAVAE 475 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNG 540 G++AYW+CP +E+ + ++ S RF L ++ ++HG+M +K++ M F G Sbjct: 476 GRQAYWVCPLVEDSEAVDYASAEARFQHLRAALGEGTVGLVHGQMPPAEKDAAMARFVAG 535 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG S+C+LLY PL Sbjct: 536 ETRVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGAAQSTCLLLYQAPL 595 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 +++ RL++L+ TEDGF IAEEDL R G+++G QSG+P+F IA E +L+E+A+ Sbjct: 596 AESGQRRLTILRETEDGFRIAEEDLAIRGAGDLIGTAQSGLPRFRIADLERQSALMEVAQ 655 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L DP L S RG++ R+LL+L + A + + G Sbjct: 656 SDARKLLHDDPTLASPRGEAARLLLWLLDQDRAIRLLSVG 695 >gi|312113594|ref|YP_004011190.1| DEAD/DEAH box helicase [Rhodomicrobium vannielii ATCC 17100] gi|311218723|gb|ADP70091.1| DEAD/DEAH box helicase domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 739 Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust. Identities = 286/695 (41%), Positives = 435/695 (62%), Gaps = 4/695 (0%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L APL++ +G+G + + L+K++ R IDLL++ P+ +DR P +SE Sbjct: 46 LQAPLTSLKGLGPRGAELLTKLL-AKPLTPPRVIDLLWHLPTGTLDRRLTPSVSEALPGG 104 Query: 69 IVTITGYISQHSSF-QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 IVT+ +HS+ + R P +I+ D +G + +++F+ +K + G V+G Sbjct: 105 IVTLVVTPVKHSAPPRSAPRAPVRIVCEDESGALDIVYFHGDRAGIKRLLPLGEPRLVSG 164 Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187 ++++ R+ M HP Y+ ++ P IE VY L GL+ ++I +AL+R+P PE Sbjct: 165 RVERHGTRLQMTHPDYVLAPNERHRLPAIEPVYPLTLGLTQKFLYRVIGDALARVPEFPE 224 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247 W++ L++ + +P +A +H P+ D ARERLAYDE+ + Q+A+ L+R+ Sbjct: 225 WLDASLVEAQGWPGFRDALVTLHRPQSHADLALWHKARERLAYDEVSSAQLAIALVRRSH 284 Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 ++ G + EG +A K+ ++PF+ T+SQE+A+ +I DM+ RMLR+LQGDVG+GKT Sbjct: 285 RQLAGRSLVGEGSLAAKMRASLPFALTRSQETALAEIKADMASSRRMLRLLQGDVGAGKT 344 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +VA +AMA AVEAG Q +MAP +LA+QH E + + I + ++G R + Sbjct: 345 VVAALAMANAVEAGAQVALMAPTDVLARQHLETLTPLCEAAGIPLGYLSGREQGRTRGRL 404 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLL 425 L ++A G+ I GTHALFQ + + L IVDEQHRFGV QRL L +KA A +L+ Sbjct: 405 LGKLASGEIRAICGTHALFQPDVVFRDFGLAIVDEQHRFGVAQRLALQEKARAGDADILV 464 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL L+ GD+D+S++TEKPAGRKP+ T +P R+++VIE L L EG + Sbjct: 465 MTATPIPRTLQLSLHGDLDVSQLTEKPAGRKPVITRTVPQERLEDVIEGLHRALGEGAQV 524 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545 YW+CP +E + + +V ER L + F + ++HG++ +K++ + +F +L Sbjct: 525 YWVCPAVESETARDMTAVTERAAHLRQVFGERVGLVHGKLPGAEKDAAIAAFIARETTIL 584 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 +ATTVIEVG++V +A+++IIENAE FGLAQLHQLRGRVGRG SSCILLY PLS+ + Sbjct: 585 VATTVIEVGVNVPNATVMIIENAEMFGLAQLHQLRGRVGRGAAQSSCILLYKGPLSETAK 644 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665 +RL +L+ +DGF+IAEEDL+ R GE+LG KQSG P F IA L+E A ++ Sbjct: 645 SRLDILRQVDDGFVIAEEDLRLRGGGEVLGAKQSGDPGFRIAGWPEAAPLIERAATAVRY 704 Query: 666 ILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 +L +DP L S +G + R L L++ +EA + ++AG Sbjct: 705 LLGRDPYLKSDQGLAARTCLALFERDEAMRLLQAG 739 >gi|90424107|ref|YP_532477.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18] gi|90106121|gb|ABD88158.1| ATP-dependent DNA helicase RecG [Rhodopseudomonas palustris BisB18] Length = 699 Score = 561 bits (1447), Expect = e-158, Method: Compositional matrix adjust. Identities = 303/701 (43%), Positives = 438/701 (62%), Gaps = 3/701 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP LNPLFAP+++ GVG K +++ + R +DLL + P S IDR RPK Sbjct: 1 MRPPLLNPLFAPVTSLPGVGPKQDKLFRYLLD--RSETPRLVDLLLHLPVSVIDRRARPK 58 Query: 61 ISEISEERIVTITGYISQH-SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I + +VT+ + +H + + R P+ + +D TG++ L +F + ++ + Sbjct: 59 IRDAVPGSMVTLEVTVDRHRPAPGGRSRAPHLVYASDDTGDVVLTYFRAQPGYVEKLLPV 118 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G K V+G + + +VHP + + I+ VY L GL+V ++ + +AL Sbjct: 119 GEKRYVSGTAQMFDGTLQIVHPDRVVDEAGLALLSGIDPVYPLTEGLAVGSLRRAVAQAL 178 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 +LP LPEW +++++ F AEA +H P + D P RLAYDELLAGQ+A Sbjct: 179 LKLPTLPEWTAPEVMRRCGFAPFAEALQRVHRPVELTDILPDGPFWSRLAYDELLAGQLA 238 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L+R Q ++ G +G + KI+ +P++ T SQ++A I +D+ Q RMLR+LQ Sbjct: 239 LALVRAQLRRPAGTRNAGDGGLRAKIIDALPYALTASQQAAAAAIAEDLRQPVRMLRLLQ 298 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT+VAL+A AA E G QA +MAP ILA+QH++ + + V I+TG Sbjct: 299 GDVGSGKTVVALLAAAAVAEVGKQAALMAPTEILARQHFKTVAPLAAQAGLRVAILTGRE 358 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 RR+ L +A G+ H ++GTHAL QD + + L L +VDEQHRFGV++RL LT K Sbjct: 359 KGKERREILAALASGEIHCLVGTHALIQDDVVFNDLALAVVDEQHRFGVRERLALTNKGA 418 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 A VL+++ATPIPRTLVL+ GD+D+S++ EKPAGR+PI T +P +R++EV++ + L Sbjct: 419 AVDVLVLSATPIPRTLVLSYFGDMDLSELREKPAGRQPIDTRAVPNSRLNEVMDAVGRAL 478 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 + GK YWICP +EE + + +RF SL + + ++HG+M DK+ VM F Sbjct: 479 AAGKLVYWICPLVEESETVHLTDAEQRFESLKFRYGDRVGLVHGKMRGPDKDRVMAQFAA 538 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 LL+ATTV+EVG+DV DA+I++IENAE FGLAQLHQLRGR+GRG E S+C+LLY P Sbjct: 539 HEIGLLVATTVVEVGVDVPDATIMVIENAERFGLAQLHQLRGRIGRGSESSTCLLLYKEP 598 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 L + S RL V++ T DGF IAEEDLK R EG++LG +QSG+P + IA+PE+H L+ A Sbjct: 599 LGEMSAARLRVIRETTDGFRIAEEDLKLRGEGDVLGTRQSGLPGYRIARPEVHAQLISQA 658 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 R +A IL +P L RG+++R LLYL++ +EA I AG Sbjct: 659 RDEALQILKDNPKLKGERGEALRCLLYLFERDEALPLIGAG 699 >gi|148554435|ref|YP_001262017.1| DEAD/DEAH box helicase domain-containing protein [Sphingomonas wittichii RW1] gi|148499625|gb|ABQ67879.1| DEAD/DEAH box helicase domain protein [Sphingomonas wittichii RW1] Length = 686 Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust. Identities = 294/706 (41%), Positives = 431/706 (61%), Gaps = 26/706 (3%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP LNPLFA + +GVG + L K+ R +DLLF+ P+ IDR Sbjct: 1 MRPDILNPLFAEVEALKGVGPTLAKPLRKL------ELERVVDLLFHLPTGSIDRKPVDT 54 Query: 61 ISEISEERIVTI----TGYISQHSSFQLQKRRPYKILLNDGTGEI-TLLFFYRKTEMLKN 115 + RIVT+ T Y + R P+++ D G + +L++F K Sbjct: 55 VEAEDAGRIVTVRLVPTSYRASGG------RGPFRVGATDQAGNVVSLVYFGGNPGWAKK 108 Query: 116 VFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKII 175 + G V+G++ + +VHP ++ ++ + P E+VY L G++ ++I Sbjct: 109 LLPIGEPRIVSGRLDLYGQELQIVHPDHVLSPAEAADLPTRESVYPLSEGITSRRLGQLI 168 Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235 + + R P LPEWIE LLQ + +PS +A H A+D PAR RLAYDEL A Sbjct: 169 EQGIERAPELPEWIEPSLLQARGWPSWHDAVVRAHA--DAQD----EPARARLAYDELFA 222 Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL+L+R +K G+P+ +G++ ++ +P++PT +Q A+ +I D+ Q M Sbjct: 223 NQLALMLVRASSRKRRGLPLKGDGRLRDQL--KLPYAPTGAQSRAVAEIEGDLVQPAPMT 280 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R+LQGDVGSGKTLVA +A+ AVEAG Q ++AP ILA+QH+E + + + V I+ Sbjct: 281 RLLQGDVGSGKTLVATMALLCAVEAGAQGALLAPTEILARQHFETLGRTLAGLPVNVAIL 340 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 TG R L +A G I++GTHA+FQ+ + Y KL L +VDEQHRFGV QR+ L Sbjct: 341 TGREKGKAREATLMALADGSIDILVGTHAIFQEKVGYRKLGLAVVDEQHRFGVAQRMMLQ 400 Query: 416 QKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 KA PH+L+MTATPIPRTL L+ G++D+S++ E P GR+PI+T +I R+DEV + Sbjct: 401 AKAERPPHLLVMTATPIPRTLTLSHYGEMDVSRLDEMPPGRQPIETRVISGERLDEVAQA 460 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534 L L+ G++AYW+CP +EE ++S+ + R SL + F + ++HGRM +K++VM Sbjct: 461 LGRHLAAGRQAYWVCPLVEESEQSDLAAAEGRAESLRQWFGDKVGVVHGRMKGPEKDAVM 520 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F+ G +L+ATTVIEVG+DV +A+++IIE A+ FGLAQLHQLRGRVGRG++ S C+L Sbjct: 521 AEFQAGRIGVLVATTVIEVGVDVPNATLMIIEGADRFGLAQLHQLRGRVGRGDQRSVCLL 580 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 L LS+ S RL++++ T DGF IAEEDL+ R GEILG +QSG F +A PE + Sbjct: 581 LRGNALSETSRARLALMRETNDGFRIAEEDLRLRGAGEILGTRQSGEAAFRLAGPERTAA 640 Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 L+E A +DA+ ++ +D L S RGQ+ RI LYL++ + A +RAG Sbjct: 641 LIEAATQDARLLVDRDGGLDSERGQAARIALYLFERDAAVGLLRAG 686 >gi|84516175|ref|ZP_01003535.1| heme peroxidase [Loktanella vestfoldensis SKA53] gi|84509871|gb|EAQ06328.1| heme peroxidase [Loktanella vestfoldensis SKA53] Length = 696 Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust. Identities = 283/700 (40%), Positives = 427/700 (61%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLF L+ GVG K + +S +A + DLL P S +DR R I Sbjct: 4 RPEALFPLFGTLTRLDGVGAKTAQVMS------DAGIAKPADLLLTLPVSGVDRRRRASI 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 E+ IVT+ + H + K +PY+I + D L+FF+ + + L+ + G+ Sbjct: 58 REVIAPCIVTVEVTVGLHLPPK-TKGKPYRITVQDAETSFQLVFFHLRGDYLQKLLPTGQ 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+GK++ +VHP ++ P E VY L GL+ + K AL+ Sbjct: 117 RRVVSGKLELFDGIAQIVHPDHVLPPLDADTIPAFEPVYPLHAGLTQKVMWKATRSALAL 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 LP L +WI+ ++ +P A+A ++ HNP+ D PAR RLAYDEL+A QI L Sbjct: 177 LPDLADWIDPAQKAREGWPDWAQALHLAHNPQSPVDLSPHHPARARLAYDELMAHQITLA 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R ++ G+ +G++ +++L +P+SPT +Q AI +I D++ RM R+LQGD Sbjct: 237 LARANARRAKGVASAGDGQLQKRVLGALPYSPTGAQTRAIAEIGADLAAPLRMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA++A+ VE+ GQ V+MAP ILA+QHY ++ + ++++TG Sbjct: 297 VGSGKTLVAMMALLQVVESDGQGVMMAPTEILARQHYAGLEPLAAAAGVRLDVLTGRDKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 R L +A G I++GTHA+FQ + ++ L L ++DEQHRFGV QR++L K A Sbjct: 357 RDRAAKLAALAQGDIQILVGTHAVFQKDVHFHDLRLAVIDEQHRFGVAQRMELGAKGRAV 416 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L GD+D+S + EKP GRKP++T ++ R+DE++ +L+ +++ Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPVQTALVSAARMDEIVAKLRAAVAD 476 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540 G++AYW+CP +EE + + +RF L + + ++HG+M +K++ M F +G Sbjct: 477 GRQAYWVCPLVEESEIIEMTAAEDRFKRLRAALGDTVVGLVHGQMPVTEKDAAMARFVSG 536 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG S+C+L+Y PPL Sbjct: 537 DTRVLVATTVIEVGVNVPNASIMMIEGAESFGLAQLHQLRGRVGRGAAASTCLLIYQPPL 596 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S+N RL +L+ TEDGF I+EEDL R G+++G QSG+P+F IA E L+ +A+ Sbjct: 597 SENGRKRLEILRETEDGFRISEEDLAMRGAGDVIGTAQSGLPRFRIADLERQAGLMAVAQ 656 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L DPDL + RGQ+ R LL+L + + A + I G Sbjct: 657 SDARKLLHDDPDLQTPRGQAARALLWLLEQDRAIRLISIG 696 >gi|77463177|ref|YP_352681.1| ATP-dependent DNA helicase RecG [Rhodobacter sphaeroides 2.4.1] gi|77387595|gb|ABA78780.1| Haem peroxidase [Rhodobacter sphaeroides 2.4.1] Length = 695 Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust. Identities = 294/700 (42%), Positives = 423/700 (60%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLFA L T GVG K + + + TR DLLF P S +DR R I Sbjct: 3 RPEILFPLFADLETLEGVGPKSAKAFAGL------GVTRPKDLLFLLPHSAVDRSRRSSI 56 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 ++ T+ + H + +K PY+I + D E TL+FF+ + + L + G Sbjct: 57 RDVLPPVTATVEVTVGAHYPSR-RKGGPYRIAVRDAEAEFTLVFFHARGDYLMKLLPPGE 115 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+G+I+ MVHP ++ + P E VY L GL+ L K AL R Sbjct: 116 QRIVSGRIEVFDGMAQMVHPDHVLPPEEAAALPACEPVYPLTAGLTQKLVAKAASAALLR 175 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 LP L EWI+ L ++ +P A A H P + T+ AR RLAYDEL A Q+ L Sbjct: 176 LPELAEWIDPGLKAREGWPDWAAAVRAAHAPEAPAEVTPTAAARRRLAYDELFAHQLTLT 235 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R ++ G+ G + +++L ++PF+PT +Q A+ +I DM+ RM R+LQGD Sbjct: 236 LARASRRRGRGVASVGTGALQRRVLESLPFAPTAAQTRAVAEIAADMAAPQRMNRLLQGD 295 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVA +A+A AVEAGGQ V+MAP ILA+QH + + I + ++TG Sbjct: 296 VGAGKTLVAFLALAIAVEAGGQGVMMAPTEILARQHLASLAPMAEAAGIRLALLTGRDKG 355 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 A R L +A G+ +++GTHA+FQ + ++ L L IVDEQHRFGV QR++L K A Sbjct: 356 AERAAKLAALAAGEIGVLVGTHAVFQKDVIFHDLRLAIVDEQHRFGVAQRMELGAKGAAA 415 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L S GD+D+S + EKP GR P+KT ++ RIDEV+ L ++E Sbjct: 416 DVLVMTATPIPRSLALASYGDMDVSVLDEKPPGRTPVKTALVSCERIDEVVASLAHAVAE 475 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNG 540 G++AYW+CP +E+ + ++ S RF L ++ ++HG+M +K++ M F G Sbjct: 476 GRQAYWVCPLVEDSEAVDYASAEARFQHLRAALGEGTVGLVHGQMPPAEKDAAMARFVAG 535 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG S+C+LLY PL Sbjct: 536 ETRVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGAAQSTCLLLYQAPL 595 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 +++ RL++L+ TEDGF IAEEDL R G+++G QSG+P+F IA E +L+E+A+ Sbjct: 596 AESGQRRLTILRETEDGFRIAEEDLAIRGAGDLIGTAQSGLPRFRIADLERQSALMEVAQ 655 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L DP L S RG++ R+LL+L + A + + G Sbjct: 656 SDARKLLHDDPTLASPRGEAARLLLWLLDQDRAIRLLSVG 695 >gi|254437315|ref|ZP_05050809.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus 307] gi|198252761|gb|EDY77075.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus 307] Length = 703 Score = 558 bits (1439), Expect = e-157, Method: Compositional matrix adjust. Identities = 287/700 (41%), Positives = 426/700 (60%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLF L + G+G K + L A+ + DLLF P S +DR R I Sbjct: 11 RPEVLWPLFGGLESLDGIGPKSAQALIA------AHIEKPRDLLFTLPHSGVDRRRRESI 64 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 ++ + T+ I QH+ + RPY++++ D L+FF E L+ G+ Sbjct: 65 LDVQAPAVCTVEVTIGQHT-VPSSRGRPYRVMVEDQLTTFQLVFFRSHGEYLRKQLPTGQ 123 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+GKI+ MVHP +I + PL E VY L ++ K + L + Sbjct: 124 RRVVSGKIELFDGIGQMVHPDHILTPDEAEQIPLFEPVYPLTGTITQKAMFKATTDLLGQ 183 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 P L EWI+ L ++ +P A H P + + TS AR+RLAYDE+LA Q+ L Sbjct: 184 APDLVEWIDPALRAREGWPGWGAALAQAHRPLSSAELSPTSAARQRLAYDEVLAHQLTLA 243 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R Q ++ G +G K+L + F PT +Q A +I +DM++ +RM R+LQGD Sbjct: 244 LARAQARRSKGRMTVGDGAKQAKVLAALGFFPTGAQVRATAEIAEDMAKPHRMNRLLQGD 303 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVAL+A+ AVEAGGQ V+MAP ILA+QH E ++ + +++E++TG Sbjct: 304 VGSGKTLVALMALLTAVEAGGQGVMMAPTEILARQHLEGLRPLAEGAGVVLELLTGRDKG 363 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 RR L +A G HI++GTHA+FQ+ + + L L I+DEQHRFGV QR++L K T+ Sbjct: 364 GERRAKLAALAAGDIHILVGTHAVFQNDVVFADLRLAIIDEQHRFGVAQRMELGAKGTSV 423 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L GD+D+S + EKP GR P+ T ++ +++D+VI+RL+ +++ Sbjct: 424 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRSPVTTALVATSKMDQVIDRLRAAVAQ 483 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540 G++ YW+CP +EE + S+ + +RF L + ++HG+M +K++ M F +G Sbjct: 484 GRQCYWVCPLVEESEVSDMTAAEDRFKRLRAVLGEDVVGLVHGQMPPANKDAAMRGFVSG 543 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 K+L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG S+C+L+Y PL Sbjct: 544 KTKVLVATTVIEVGVNVPNASIMVIERAESFGLAQLHQLRGRVGRGSTKSTCLLMYQAPL 603 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S+ RL +++ TEDGF I+EEDL R G+++G +QSG+P+F IA E +L+ +A+ Sbjct: 604 SEGGRQRLEIMRETEDGFRISEEDLAMRGAGDVIGTEQSGLPRFRIADLEHQTALMALAQ 663 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L DP L S RG++ R LL+L + ++A + I G Sbjct: 664 TDARKLLLDDPKLESGRGKAARTLLWLMEQDKAIRLISVG 703 >gi|332558051|ref|ZP_08412373.1| ATP-dependent DNA helicase RecG [Rhodobacter sphaeroides WS8N] gi|332275763|gb|EGJ21078.1| ATP-dependent DNA helicase RecG [Rhodobacter sphaeroides WS8N] Length = 695 Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust. Identities = 294/700 (42%), Positives = 422/700 (60%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLFA L T GVG K + + + TR DLLF P S +DR R I Sbjct: 3 RPEILFPLFADLETLEGVGPKSAKAFAGL------GVTRPKDLLFLLPHSAVDRSRRASI 56 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 ++ T+ + H + +K PY+I + D E TL+FF+ + + L + G Sbjct: 57 RDVLPPVTATVEVTVGAHYPSR-RKGGPYRIAVRDAGAEFTLVFFHARGDYLMKLLPPGE 115 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+G+I+ MVHP ++ + P E VY L GL+ L K AL R Sbjct: 116 QRIVSGRIEVFDGMAQMVHPDHVLPPEEAAALPACEPVYPLTAGLTQKLVAKAASAALLR 175 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 LP L EWI+ L ++ +P A A H P + T+ AR RLAYDEL A Q+ L Sbjct: 176 LPELAEWIDPGLKAREGWPDWAAAVRAAHAPEAPAEVTPTAAARRRLAYDELFAHQLTLT 235 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R ++ G+ G + +++L +PF+PT +Q A+ +I DM+ RM R+LQGD Sbjct: 236 LARASRRRGRGVASVGTGALQRRVLERLPFAPTAAQTRAVAEIAADMAAPQRMNRLLQGD 295 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVA +A+A AVEAGGQ V+MAP ILA+QH + + I + ++TG Sbjct: 296 VGAGKTLVAFLALAIAVEAGGQGVMMAPTEILARQHLASLAPMAEAAGIRLALLTGRDKG 355 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 A R L +A G+ +++GTHA+FQ + ++ L L IVDEQHRFGV QR++L K A Sbjct: 356 AERAAKLAALAAGEIGVLVGTHAVFQKDVVFHDLRLAIVDEQHRFGVAQRMELGAKGAAA 415 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L S GD+D+S + EKP GR P+KT ++ RIDEV+ L ++E Sbjct: 416 DVLVMTATPIPRSLALASYGDMDVSVLDEKPPGRTPVKTALVSCERIDEVVASLAHAVAE 475 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNG 540 G++AYW+CP +E+ + ++ S RF L ++ ++HG+M +K++ M F G Sbjct: 476 GRQAYWVCPLVEDSEAVDYASAEARFQHLRAALGEGTVGLVHGQMPPAEKDAAMARFVAG 535 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG S+C+LLY PL Sbjct: 536 ETRVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGAAQSTCLLLYQAPL 595 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 +++ RL++L+ TEDGF IAEEDL R G+++G QSG+P+F IA E +L+E+A+ Sbjct: 596 AESGQRRLTILRETEDGFRIAEEDLAIRGAGDLIGTAQSGLPRFRIADLERQSALMEVAQ 655 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L DP L S RG++ R+LL+L + A + + G Sbjct: 656 SDARKLLHDDPTLASPRGEAARLLLWLLDQDRAIRLLSVG 695 >gi|221639034|ref|YP_002525296.1| ATP-dependent DNA helicase RecG [Rhodobacter sphaeroides KD131] gi|221159815|gb|ACM00795.1| ATP-dependent DNA helicase RecG [Rhodobacter sphaeroides KD131] Length = 695 Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust. Identities = 293/700 (41%), Positives = 421/700 (60%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLFA L T GVG K + + + TR DLLF P S +DR R I Sbjct: 3 RPEILFPLFADLETLEGVGPKSAKSFAGL------GVTRPKDLLFLLPHSAVDRSRRASI 56 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 ++ T+ + H + +K PY+I + D E TL+FF+ + + L + G Sbjct: 57 RDVLPPVTATVEVTVGAHYPSR-RKGGPYRIAVRDAEAEFTLVFFHARGDYLMKLLPPGE 115 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+G+I+ MVHP ++ + P E VY L GL+ L K AL R Sbjct: 116 QRIVSGRIEVFDGMAQMVHPDHVLPPEEAAALPACEPVYPLTAGLTQKLVAKAASAALLR 175 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 LP EWI+ L ++ +P A A H P + T+ AR RLAYDEL A Q+ L Sbjct: 176 LPEPAEWIDPGLKAREGWPDWAAAVRAAHAPEAPAEVTPTAAARRRLAYDELFAHQLTLT 235 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R ++ G+ G + +++L ++ F+PT +Q A+ +I DM+ RM R+LQGD Sbjct: 236 LARASRRRGRGVASVGTGALQRRVLESLSFAPTTAQTRAVAEIAADMAAPQRMNRLLQGD 295 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVA +A+A AVEAGGQ V+MAP ILA+QH + + I + ++TG Sbjct: 296 VGAGKTLVAFLALAIAVEAGGQGVMMAPTEILARQHLASLAPMAEAAGIRLALLTGRDKG 355 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 A R L +A G+ +++GTHA+FQ + ++ L L IVDEQHRFGV QR++L K A Sbjct: 356 AERAVKLAALASGEIGVLVGTHAVFQKDVIFHDLRLAIVDEQHRFGVAQRMELGAKGAAA 415 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L S GD+D+S + EKP GR P+KT ++ RIDEV+ L ++E Sbjct: 416 DVLVMTATPIPRSLALASYGDMDVSVLDEKPPGRTPVKTALVSCERIDEVVASLAHAVAE 475 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNG 540 G++AYW+CP +E+ + ++ S RF L ++ ++HG+M +K++ M F G Sbjct: 476 GRQAYWVCPLVEDSEAVDYASAEARFQHLRAALGEGTVGLVHGQMPPAEKDAAMARFVAG 535 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG S+C+LLY PL Sbjct: 536 ETRVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGAAQSTCLLLYQAPL 595 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 ++N RL++L+ TEDGF IAEEDL R G+++G QSG+P+F IA E +L+E+A+ Sbjct: 596 AENGQRRLTILRETEDGFRIAEEDLAIRGAGDLIGTAQSGLPRFRIADLERQSALMEVAQ 655 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L DP L S RG++ R+LL+L + A + + G Sbjct: 656 SDARKLLHDDPTLASPRGEAARLLLWLLDQDRAIRLLSVG 695 >gi|119386789|ref|YP_917844.1| DEAD/DEAH box helicase domain-containing protein [Paracoccus denitrificans PD1222] gi|119377384|gb|ABL72148.1| DEAD/DEAH box helicase domain protein [Paracoccus denitrificans PD1222] Length = 697 Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust. Identities = 290/701 (41%), Positives = 426/701 (60%), Gaps = 10/701 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLFA + T GVG + + +++ R DL+ P S I R ++ Sbjct: 5 RPPALFPLFAGVETLPGVGPRAAEAFAQM------GVMRLRDLVLTLPHSGIRRRRIARL 58 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 +E IVT+ + +HS K RP+++ +DG+ ++ L+FF+ + + +++ G Sbjct: 59 AEADPPEIVTVAITVQRHSP-PTAKGRPWRVHCSDGSADLLLVFFHPRKDWIESQLPAGA 117 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+GKI+ MVHP +I D P E VY L L+ + +K + A++R Sbjct: 118 RRLVSGKIELFDGMAQMVHPDHIGAEGSDPP-PDFEPVYPLSGRLTQGVVQKAVQAAMTR 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 LP EWI+ L+ ++ +P A H P T PAR RLAYDEL A Q+ L Sbjct: 177 LPQAAEWIDPALVAREGWPDWQTALVRAHAPEGPAGLSPTDPARARLAYDELFAHQMTLA 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L+R+ +++ G+ +G + K+L +P+ PT +Q A+ +I DM+ RM R+LQGD Sbjct: 237 LLRRDRRRQAGLATQGDGHLRDKVLAGLPWPPTGAQRRAVDEIAADMAAPRRMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVA A+ AVEAGGQ V+MAP ILA+QH+ ++ + I +E +TG Sbjct: 297 VGAGKTLVAFFALLVAVEAGGQGVLMAPTEILARQHFRALEPLARLAGIRLEALTGRDKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-- 419 R L +A G+ I++GTHA+ Q S++++ L L IVDEQHRFGV QR++L K Sbjct: 357 DARANILTDLAEGRIVILVGTHAVIQKSVEFHDLRLAIVDEQHRFGVNQRMELGAKGGHQ 416 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 P +L+MTATPIPR+L L GD+D+S + EKPAGR+PI+T +I R+ EV++ L L Sbjct: 417 PPDMLVMTATPIPRSLALAQFGDMDLSVLDEKPAGRQPIRTTVISDARMGEVVDHLARAL 476 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 G +AYW+CP +EE + + + RF L F + ++HG+M ++++ M F Sbjct: 477 DGGARAYWVCPLVEESEAVDLTAAEARFQELRARFGDQVRLVHGQMPADERDAAMADFAA 536 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G +L+ATTVIEVG+DV +A+I++IE AE FGLAQLHQLRGRVGRG SSC+L+YH P Sbjct: 537 GRAGILVATTVIEVGVDVPEATIMVIERAESFGLAQLHQLRGRVGRGSGASSCLLMYHEP 596 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 LS+ RL++L+ TEDGF IAEEDL R G+++G QSG+P+F IA E L+ +A Sbjct: 597 LSETGRRRLTILRETEDGFRIAEEDLVMRGAGDVIGTAQSGLPRFRIADLERQAGLMALA 656 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 RKDA+ L +DP + S RGQ++R+LL+L + + A + I AG Sbjct: 657 RKDAQSFLERDPAMESERGQAVRLLLWLMEQDRAIRLITAG 697 >gi|84500837|ref|ZP_00999072.1| ATP-dependent DNA helicase RecG [Oceanicola batsensis HTCC2597] gi|84390904|gb|EAQ03322.1| ATP-dependent DNA helicase RecG [Oceanicola batsensis HTCC2597] Length = 694 Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust. Identities = 291/700 (41%), Positives = 429/700 (61%), Gaps = 10/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLFA + T GVG K + L++I R DLLF P+ IDR R I Sbjct: 4 RPEILFPLFADVQTLPGVGPKTARHLAQI----GVETPR--DLLFLLPNGTIDRRRRDTI 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 VT+ + H +K Y++++ D + L+FF+ + + L + G Sbjct: 58 RGAPLPGTVTVEVEVGAHRPAA-RKGGAYRVMVRDAQEDFPLVFFHARGDYLGKLLPTGA 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+GK++ MVHP ++ + + P E VY L G++ + K ALSR Sbjct: 117 RRIVSGKLELFDGIAQMVHPDHVLPPDEAGDLPEFEPVYPLTQGVTQRVMGKAAAGALSR 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 P L EWI+ DL+ ++ +P ++A H PR + AR RLAYDELLA Q+ L Sbjct: 177 APDLAEWIDPDLMAQRGWPGWSDALRAAHEPRD--EISVLDTARTRLAYDELLAHQLTLA 234 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R + ++ G +G + +++L +P+ PT +Q A+ +I DM+ + RM R+LQGD Sbjct: 235 LARARTRRGKGRVTRGDGGLRERVLAALPYRPTGAQTRALGEISADMAGETRMSRLLQGD 294 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVA++A+ AVEAGGQ V+MAP ILA+QH E + + + V I+TG Sbjct: 295 VGAGKTLVAVLALLIAVEAGGQGVMMAPTEILARQHLESVTPLAEAAGVRVAILTGRDRG 354 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 A R L+ +A G+ I++GTHA+FQ + + L L IVDEQHRFGV+QRL+L +K Sbjct: 355 ADRAAKLDDLAEGRIDILLGTHAVFQSDVVFRDLRLAIVDEQHRFGVRQRLELGRKGALA 414 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L GD+D+S + EKP GRKPI+T ++ R+DEV++ L+ +SE Sbjct: 415 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPIRTALVSTARMDEVVDHLRQAVSE 474 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540 G++AYW+CP +EE + + + +RF L +A++HG+M DK++ M F G Sbjct: 475 GRRAYWVCPLVEESETVDLTAAEDRFKHLRAALGDEVVALVHGQMPPADKDAAMADFVAG 534 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRGE ++C+L+Y PL Sbjct: 535 RRQVLVATTVIEVGVNVPEASIMVIERAETFGLAQLHQLRGRVGRGEAQATCLLMYRAPL 594 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S+ + RL++++ TEDGF IAE DL+ R G+++G QSG+P+F IA E L+ +A+ Sbjct: 595 SEPAEKRLTLMRETEDGFRIAEVDLEMRGAGDMIGTAQSGLPRFRIADLERDTGLMALAQ 654 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L++D L S RG++ R LL+L +EA + I G Sbjct: 655 SDARALLSRDATLESDRGRAARTLLWLMGQDEAIRLISVG 694 >gi|114767409|ref|ZP_01446211.1| ATP-dependent DNA helicase RecG [Pelagibaca bermudensis HTCC2601] gi|114540494|gb|EAU43573.1| ATP-dependent DNA helicase RecG [Roseovarius sp. HTCC2601] Length = 696 Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust. Identities = 291/700 (41%), Positives = 423/700 (60%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L LFA L T GVG K + L + DLLF P IDR R + Sbjct: 4 RPEALWALFAELKTLDGVGPKTAQALEGLDIVAPR------DLLFTLPHGVIDRRPRDSV 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + + +VT+ + +H QK RPY+I + D L+FF+ +++ L V EG Sbjct: 58 QDANLPGVVTVEVTVGRHMK-PAQKGRPYRIHVEDAQTGFQLVFFHGRSDYLGRVLPEGS 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+G+++ MVHP +I + + P E VY L G++ L + +AL++ Sbjct: 117 RRIVSGRVELFDGMAQMVHPDHILPPEEAASLPAFEPVYPLTGGVTQKLMARASADALAK 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 P L EWI+ L ++ +P A H P A +PAR RLAYDELLA Q+ L Sbjct: 177 APELDEWIDGPLKAREGWPDWRAALEAAHAPYGADALSPAAPARARLAYDELLAHQLTLA 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R +K G +G + +K+L +PF PT +Q A+ +I +DM+ RM R+LQGD Sbjct: 237 LARVHRRKGRGRSTRGDGALRRKVLAALPFRPTGAQMRAMDEIAEDMAGGERMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVA +A+ AVEAGGQ V+MAP ILA+QH E ++ ++ ++VEI+TG Sbjct: 297 VGAGKTLVAFMALLVAVEAGGQGVMMAPTEILARQHLEGLRPLAESAGVVVEILTGRDKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 + R+ L + G I++GTHA+FQ + + L L IVDEQHRFGV+QRL+L +K Sbjct: 357 SERKAKLAALERGDIQILVGTHAVFQADVAFRDLRLAIVDEQHRFGVRQRLELGRKGAGA 416 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L GD+D+S + EKP GRKPI+T ++ R+ EV+E L ++E Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPIRTALVSAERMQEVVEHLVQAVAE 476 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540 G++AYW+CP +EE + + + ERF L + ++HG+M +K++ M F G Sbjct: 477 GRQAYWVCPLVEESEAVDLTAAEERFKRLRAVLGEGVVGLVHGQMPPAEKDAAMARFVAG 536 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L+ATTVIEVG++V +A+I++IE AE FGLAQLHQLRGRVGRGE S+C+L+Y PPL Sbjct: 537 ETQVLVATTVIEVGVNVPNATIMVIERAEWFGLAQLHQLRGRVGRGEGDSTCLLMYQPPL 596 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + RL L+ TEDGF I+E DL+ R G+++G QSG+P+F +A E L+ +A+ Sbjct: 597 GEAGMKRLKTLRETEDGFRISEVDLEMRGAGDLIGTAQSGLPRFKVADLEHQSGLMAMAQ 656 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L DP L S RG++ ++LL+L + +EA + I G Sbjct: 657 SDARKLLADDPTLESSRGRAAKMLLWLMRQDEAIRLISVG 696 >gi|167646874|ref|YP_001684537.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter sp. K31] gi|167349304|gb|ABZ72039.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31] Length = 691 Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust. Identities = 293/703 (41%), Positives = 416/703 (59%), Gaps = 15/703 (2%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP L PLF P+ST +GVG + + + ++ D+LF P+S I R Sbjct: 1 MRPEILFPLFTPVSTLKGVGPRVAPLVERLAG------PIVRDVLFTPPTSLIRRTATTS 54 Query: 61 ISEIS---EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVF 117 + + +VTI ++ + Q P++I D G +TL +F L+ Sbjct: 55 DRAVDGQVQTFLVTIDAHLPPQRAGQ-----PWRIRAWDEHGFVTLTWFKGYGSHLERAH 109 Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + V+GK+++ + I + HP Y+ + P +E VY GL F+K E Sbjct: 110 PVGARRAVSGKVERFGSEIQVAHPDYLLEAERAAEIPPVEPVYPATAGLPSRTFRKFAQE 169 Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237 AL R LPEW + L ++ FP+ EA ++HNPR D S AR RLAYDELLA Q Sbjct: 170 ALERAAPLPEWQDPAWLTREGFPAWREALALLHNPRAEIDLSPMSIARRRLAYDELLAHQ 229 Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 +AL RK K+ P V G ++ + +PF T +Q A+ ++ DM+ RM R+ Sbjct: 230 LALA-QRKAGKRSHPAPRIVAGPLSDAAEKALPFKLTGAQIRALSEVRGDMASGERMGRL 288 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 LQGDVGSGKT+VA++AMA A +G Q+ +MAP ILA+QHYE + + + V ++TG Sbjct: 289 LQGDVGSGKTVVAMLAMADAASSGLQSALMAPTEILARQHYETLAPPLEAQGLAVILLTG 348 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 + R L ++A G A + +GTHALFQD + + L L I+DEQHRFGV +R +L K Sbjct: 349 RDKGSARASKLAKLADGSAAVAVGTHALFQDDVVFKGLGLTIIDEQHRFGVNERKRLQDK 408 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 H++ M+ATPIPRTL LT GD+D+S+I EKP GR P+ T P RI E+I RLK Sbjct: 409 GEGAHLVAMSATPIPRTLELTVFGDLDVSRIDEKPPGRTPVATRAAPTPRIPEIIARLKA 468 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537 G +A+WICP + E + + R R SL E S+ ++HG+M +K++VM F Sbjct: 469 AAQAGAQAFWICPLVSESDKIDLRDAERRAASLREAIGPSVGLVHGQMPAAEKDAVMADF 528 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 +G +L+ATTV+EVG++V +ASI++IE+A+ FGLAQLHQLRGRVGRG SSC+LLY Sbjct: 529 VDGKVSVLVATTVVEVGVNVPNASIMVIEHADRFGLAQLHQLRGRVGRGSRESSCVLLYD 588 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PPLS+ + RL +L+ ++DGF IAE+DL+ R G+ LG+KQSG P + +A P H L+ Sbjct: 589 PPLSEVAQQRLDILRRSDDGFEIAEKDLELRGGGDPLGLKQSGFPAYKLADPVAHRDLIA 648 Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 +A DA+ IL +DPDLTS RGQ++R L L+ + A AG Sbjct: 649 VAADDARLILARDPDLTSPRGQAVRTLQELFDWKAASPLNDAG 691 >gi|114327498|ref|YP_744655.1| ATP-dependent DNA helicase recG [Granulibacter bethesdensis CGDNIH1] gi|114315672|gb|ABI61732.1| ATP-dependent DNA helicase recG [Granulibacter bethesdensis CGDNIH1] Length = 685 Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust. Identities = 291/693 (41%), Positives = 426/693 (61%), Gaps = 17/693 (2%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 LFAPL++ G+G + L K CG R +DLLF+ P F R + E Sbjct: 9 LFAPLTSLPGIGPTLAPLLEK--ACGG---PRVLDLLFHLPDGFTRRTAISALREAQPGT 63 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTG 127 +VTI + H + +R+P+++ + D G E ++FF R + G ++ V+G Sbjct: 64 VVTIALDVVAHHA-PATRRQPWRVKVMDREGCEADIVFFSRAR---LDRLPIGTRVAVSG 119 Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187 K + +I HP +I +Q P IE V+ L GL ++ + EAL LP PE Sbjct: 120 KADRFGEKITFPHPDHIVPITQMDTIPAIEPVWPLTAGLFPGQIRRALKEALGCLPDFPE 179 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247 WI+ LL KKS+P A + +H P + D SP +RLAYDEL A Q+A+ M+++ Sbjct: 180 WIDPHLLAKKSWPCFGAALHALHQPEQIPD---QSP-HDRLAYDELFAHQLAMAWMKRRE 235 Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 ++ G ++ + + ++ L T SQ A+ +I DM+ RMLR+LQGDVG+GKT Sbjct: 236 RQRPGRSLSGDNTLREEALIRFGKPMTGSQLQALSEIDGDMAAPRRMLRLLQGDVGAGKT 295 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 LVAL+AM AVEAG QA +MAP +LAQQHY + K + + V ++TG++ RR Sbjct: 296 LVALMAMLRAVEAGTQAAMMAPTELLAQQHYRTLSKLSP---VQVGLLTGSVKGVARRNL 352 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 L I G+ II+GTHALFQDS+QY L L ++DEQHRFGV+QR L K + VL+MT Sbjct: 353 LLGIQAGRIKIIVGTHALFQDSVQYRDLGLAVIDEQHRFGVEQRGMLGSKGSRTDVLVMT 412 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL+LT G++D+S++TEKPAGR+PI+T + P++++D VI+ + L +G + YW Sbjct: 413 ATPIPRTLLLTQWGEMDVSRLTEKPAGRQPIRTTLHPLSKLDAVIDGIGRALDKGDRVYW 472 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 +CP + E S+ + ERF L F + + HG+ ++E+ + F G LL+A Sbjct: 473 VCPLVSESAVSDMAAAEERFAVLRARFGEKVGLAHGQQDSAEREAALSEFAAGRTSLLVA 532 Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607 TTV+EVG+DV +ASI+++E+AE FGLAQLHQLRGRVGRG S C+LL+ +S+ + R Sbjct: 533 TTVVEVGVDVPEASIMVVEHAERFGLAQLHQLRGRVGRGAAASFCLLLHEDGMSETARRR 592 Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 L++L++TEDGFLIA+ED + R G++LG +QSG+P + +A + H +LL IA +DA ++L Sbjct: 593 LTLLRDTEDGFLIADEDFRLRGGGDLLGKRQSGLPSWRLADTDRHAALLRIASRDAAYLL 652 Query: 668 TQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 QDP LT RG + R LL L+ +A + + AG Sbjct: 653 DQDPGLTGPRGLAARSLLRLFGRGDALRNLDAG 685 >gi|83951900|ref|ZP_00960632.1| ATP-dependent DNA helicase RecG [Roseovarius nubinhibens ISM] gi|83836906|gb|EAP76203.1| ATP-dependent DNA helicase RecG [Roseovarius nubinhibens ISM] Length = 696 Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust. Identities = 292/700 (41%), Positives = 428/700 (61%), Gaps = 8/700 (1%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP L PLFA + T GVG K + + +R DL+F P S IDR R I Sbjct: 4 RPEILFPLFAGVETLPGVGPKLAQAFEGL------GVSRPRDLIFTLPHSGIDRRRRDTI 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 +VT+ + H + Q ++ PY++ + D L+FF+ + E L+ + EG Sbjct: 58 RGAELPGVVTVEVEVGPHRAPQ-RRGGPYRVTVEDSETSFQLVFFHARDEYLRRLLPEGA 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+G+++ MVHP ++ + P E VY L G+S + K + AL+R Sbjct: 117 RRVVSGRVELFDGIAQMVHPDHMLPVEETGEIPDFEPVYPLTHGISQRVMAKAVAGALTR 176 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 + L EWI+ K +P +A H P+ + PARERLAYDE LA Q+ L Sbjct: 177 VTALEEWIDPGQKAKAGWPDWNDAVIDAHGPQDRGGLAPSHPARERLAYDEFLAHQLTLA 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L R + + G +G + K+L +P+ PT +Q A+ DI DM++ RM R+LQGD Sbjct: 237 LARAKRRAAKGRESLGDGHLRDKVLGALPYRPTNAQTRAVTDIAGDMARPERMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVA++A+ AVEAGGQ V+MAP ILA+QH + + + +EI+TG Sbjct: 297 VGAGKTLVAMLALLIAVEAGGQGVMMAPTEILARQHLAGLAPLAEAAGVRIEILTGRDKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 A R + L +A G+ I++GTHA+FQ +Q+ L L +VDEQHRFGV+QRL+L +K Sbjct: 357 AARGEKLRALAAGEIGILVGTHAVFQADVQFADLRLAVVDEQHRFGVRQRLELGRKGVLA 416 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPR+L L GD+D+S + EKP GRKPIKT ++ + R++EV+ L+ ++E Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSILDEKPPGRKPIKTALVNMARMEEVVAHLRRAIAE 476 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540 G++AYW+CP +EE + + S ERF +L + ++HG+M +K++ M +F+ G Sbjct: 477 GRQAYWVCPLVEESEAVDLSSADERFKALRAVLGEGHVGLVHGQMPPEEKDAAMAAFQAG 536 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L+ATTVIEVG+DV +ASI++IE AE+FGLAQLHQLRGRVGRGE S+C+LLY PL Sbjct: 537 ETAVLVATTVIEVGVDVPNASIMVIERAEYFGLAQLHQLRGRVGRGEAESTCLLLYQAPL 596 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S+ RL+ ++ TEDGF IAE DL+ R G+++G QSG+P+F +A E L+ +A+ Sbjct: 597 SETGEKRLTTMRETEDGFRIAEVDLEMRGAGDVIGTAQSGLPRFRVADLEHQAGLMAVAQ 656 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA+ +L DPDLT RG++ R+LL+L + ++A I+ G Sbjct: 657 SDARKLLHDDPDLTGERGRAARVLLWLMEQDQAIGLIKVG 696 >gi|16125686|ref|NP_420250.1| ATP-dependent DNA helicase RecG [Caulobacter crescentus CB15] gi|221234441|ref|YP_002516877.1| ATP-dependent DNA helicase recG [Caulobacter crescentus NA1000] gi|13422802|gb|AAK23418.1| ATP-dependent DNA helicase RecG [Caulobacter crescentus CB15] gi|220963613|gb|ACL94969.1| ATP-dependent DNA helicase recG [Caulobacter crescentus NA1000] Length = 698 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 294/712 (41%), Positives = 424/712 (59%), Gaps = 26/712 (3%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP L PLF +ST +GVG + + + K+ D+LF PS I R Sbjct: 1 MRPEILFPLFTSVSTLKGVGPRVAPLVEKLAG------PIVRDVLFTAPSGLI-RRTTTT 53 Query: 61 ISEISEER----IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNV 116 + + E + IVTI G+ H Q P+KI DGTG +TL++F L+ Sbjct: 54 VDQAVENQVQTFIVTIDGHQPPHRLGQ-----PWKIRAWDGTGFLTLVWFKGHGPHLERQ 108 Query: 117 FFEGRKITVTGKIKK---LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKK 173 +G + V+GK+++ + + + HP YI + + PL+E VY GL F+K Sbjct: 109 HPKGARRAVSGKVERPEVFASELQIAHPDYIVAEDKAGDIPLVETVYPATHGLPSRTFRK 168 Query: 174 IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233 + +EAL+R P L EW + ++++ PS +A +H P D S R RLAYDEL Sbjct: 169 LALEALARAPDLAEWQDAAWIEREKLPSWRDALAALHAPASEADLSPLSRPRRRLAYDEL 228 Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 LA Q+AL RK ++ P G +++ + +PF T++Q A+ +I D++ R Sbjct: 229 LAHQLALA-QRKAARRSHPGPRIPAGPLSEAAEKALPFKLTRAQIRALSEIRGDLASGER 287 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R+LQGDVGSGKT+VA++AMA A AG Q+ +MAP ILA+QH+E I + + V Sbjct: 288 MSRLLQGDVGSGKTVVAMLAMADAASAGFQSALMAPTEILARQHFETIAAPLEALDLSVI 347 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++TG A R L +A G HI +GTHALFQD + + L L I+DEQHRFGV +R + Sbjct: 348 LLTGRDKGAGRAAKLAGLAEGAHHIAVGTHALFQDDVGFRALALTIIDEQHRFGVNERRR 407 Query: 414 LTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468 L +K A H+L M+ATPIPRTL LT GD+D+S+I EKP GR P+ T +P R+ Sbjct: 408 LQEKGPANVDWGVHLLAMSATPIPRTLELTVFGDLDVSRIDEKPPGRTPVATRAVPTPRV 467 Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528 E+IERL+V +S G +A+WICP + E + R+ +R L H + ++HG+M Sbjct: 468 PEIIERLRVAISGGAQAFWICPLVSESDKVYLRAAEDRAADLARHL-PGVGLVHGQMPPA 526 Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588 +K++VM F +G +L+ATTV+EVG++V +ASI++IE+A+ FGLAQLHQLRGRVGRG Sbjct: 527 EKDAVMQRFVDGEVNVLVATTVVEVGVNVPNASIMVIEHADRFGLAQLHQLRGRVGRGTR 586 Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648 S+C+LLY PPLS+ + RL +L+ ++DGF IAE+DL+ R G+ LG+KQSG P + +A Sbjct: 587 ESACVLLYDPPLSEVAQQRLDILRRSDDGFEIAEKDLELRGGGDPLGLKQSGFPAYRLAD 646 Query: 649 PELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 P H L+ +A DA+ IL +D LTS RGQ++R L L+ + AG Sbjct: 647 PVAHRDLIAVAADDARLILARDLALTSPRGQALRTLQELFDWTPTSVLNEAG 698 >gi|149186682|ref|ZP_01864993.1| DNA helicase [Erythrobacter sp. SD-21] gi|148829590|gb|EDL48030.1| DNA helicase [Erythrobacter sp. SD-21] Length = 687 Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust. Identities = 289/703 (41%), Positives = 421/703 (59%), Gaps = 19/703 (2%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP LNPLFA T GVG K L ++ TR DL ++ P F+ R Sbjct: 1 MRPDLLNPLFAETETLDGVGPKLKKPLGRLAL------TRIKDLAYHLPERFVTRRAVEN 54 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFE 119 + E E + + +++H + R PY++L D G I+L +F R + K Sbjct: 55 VDEAGEGEQIFLKLTVTEHRGGR-SPRAPYRVLAQDAVGNVISLTYFGRASYTAKKQLPV 113 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G V GK+++ + + +VHP ++ D L E VY L GL+ ++ +AL Sbjct: 114 GETRWVAGKLERYGDMLQIVHPDHVVEEGGDTLQRLCEPVYRLSEGLTQPRIGGLVDQAL 173 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 ++LP LPEWIE K +P+ EA H KA+D AR+RLAYDELLA +A Sbjct: 174 AKLPELPEWIEPTQFDKADWPAWREALKRAH---KAED----KAARDRLAYDELLANGLA 226 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+L+R +K G P+ +G K+ ++PF T +Q+ +I +I DM+Q+ MLR+LQ Sbjct: 227 LMLVRADNRKRKGQPLQGDGSYRGKL--DLPFPLTGAQKRSIGEIEGDMAQEAPMLRLLQ 284 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG+GKT+VAL AM AVEAG QA ++AP ILA+QHYE +++ + T V ++TG Sbjct: 285 GDVGAGKTVVALEAMLIAVEAGAQAALLAPTEILARQHYESLRRMAEPTGAEVALLTGRD 344 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R L + G I++GTHA+FQD + Y L +V++DEQHRFGV QRL L K Sbjct: 345 KGKAREGTLMGLLDGSIDIVVGTHAIFQDKVAYRNLAMVVIDEQHRFGVGQRLMLASKGR 404 Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 APHVL MTATPIPRTL L G++D+SK+ E P GR+ I TV++ ++I ++ERL Sbjct: 405 RAPHVLAMTATPIPRTLTLAQYGELDVSKLDELPPGRQAIDTVVMGQDKIPTLVERLAAQ 464 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVE-RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537 +G++A+W+CP + E + E R+ SL E F + ++HG+++ K++ M+ F Sbjct: 465 FEQGRQAFWVCPMVREMDGPEEIAAAEARYASLKERFGDDVVMVHGQLAPEQKDAAMERF 524 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 G +LL+ATTVIEVG+DV +A++++IE AE FGLAQLHQLRGRVGRG E S C+LL+ Sbjct: 525 ARGDARLLVATTVIEVGVDVPNATLMVIEQAERFGLAQLHQLRGRVGRGSEKSFCVLLHG 584 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 LS+ + RL++++ ++DGFL+AEEDLK R GE+LG +QSG F +A E LL Sbjct: 585 ETLSETAQKRLALMRESQDGFLLAEEDLKLRGGGELLGTRQSGDTPFTVASFEQITELLP 644 Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 A DA+ ++ +D L R ++ R+LLYL++ + + +R G Sbjct: 645 KAHDDARLLMERDGGLEGARAEAARVLLYLFERDFGVKTLRGG 687 >gi|295689317|ref|YP_003593010.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter segnis ATCC 21756] gi|295431220|gb|ADG10392.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC 21756] Length = 698 Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust. Identities = 284/708 (40%), Positives = 416/708 (58%), Gaps = 18/708 (2%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP L PLF +ST +GVG + + L K+ D+LF P+ I R Sbjct: 1 MRPEILFPLFTSVSTLKGVGPRVAPLLEKLAG------PIVRDVLFTAPTGLIRRSVT-T 53 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 + + E ++ T I H + +P+KI DGTG +TL++F L+ +G Sbjct: 54 VDQAVEGQVQTFVVTIDTHQPPH-RLGQPWKIRAWDGTGFLTLIWFKGHGPHLERQHPKG 112 Query: 121 RKITVTGKIKK---LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177 + V+GK+++ + + + HP YI + + P +E VY GL F+K +E Sbjct: 113 ARRAVSGKVERPEGFASELQIAHPDYIVAEERAGDIPDVETVYPATAGLPSRTFRKFALE 172 Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237 AL R P LPEW + +++ P EA +H P D + R RLAYDELLA Q Sbjct: 173 ALERAPDLPEWQDAAWRERERLPGWREALAALHAPASEADLSPLARPRRRLAYDELLAHQ 232 Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 +A+ RK ++ P+ G +++ + +PF T +Q ++ +I D++ RM R+ Sbjct: 233 LAMA-QRKASRRAHPGPVIRGGPLSEAAEKALPFKLTSAQIRSLSEIRGDLASGERMSRL 291 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 LQGDVGSGKT+VA++AMA A AG Q+ +MAP ILA+QH+E I + V ++TG Sbjct: 292 LQGDVGSGKTVVAMLAMADAASAGLQSALMAPTEILARQHFETIAAPLAALGLSVILLTG 351 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 A R L +A G I +GTHALFQD + + L L I+DEQHRFGV +R +L K Sbjct: 352 RDKGAGRAAKLAGLADGAHQIAVGTHALFQDDVAFKALALTIIDEQHRFGVNERRRLQDK 411 Query: 418 ATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 H+L M+ATPIPRTL LT GD+D+S+I EKP GR P+ T P R+ E++ Sbjct: 412 GPPDVDWGVHLLAMSATPIPRTLELTVFGDLDVSRIDEKPPGRTPVATRAAPTPRVPEIV 471 Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532 ERL+ ++ G +A+WICP + E ++ + R+ +R L H + ++HG+M +K++ Sbjct: 472 ERLRAAIAGGAQAFWICPLVSESEKVDLRAAEDRAADLARHL-PGVGLVHGQMPPAEKDA 530 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 VM F +G +L+ATTV+EVG++V +ASI++IE+A+ FGLAQLHQLRGRVGRG SSC Sbjct: 531 VMQRFVDGEVSVLVATTVVEVGVNVPNASIMVIEHADRFGLAQLHQLRGRVGRGTRESSC 590 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +LLY PPLS+ + RL +L+ ++DGF IAE DL+ R G+ LG+KQSG P + +A P H Sbjct: 591 VLLYDPPLSEVAQKRLDILRRSDDGFEIAERDLELRGGGDPLGLKQSGFPAYRLADPVAH 650 Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 L+ +A DA+ IL +DP+LTS RGQ++R+L L+ + AG Sbjct: 651 RDLIAVAADDARLILARDPELTSPRGQALRMLQELFDWKPVSALNEAG 698 >gi|83593063|ref|YP_426815.1| ATP-dependent DNA helicase RecG [Rhodospirillum rubrum ATCC 11170] gi|83575977|gb|ABC22528.1| ATP-dependent DNA helicase RecG [Rhodospirillum rubrum ATCC 11170] Length = 703 Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust. Identities = 296/708 (41%), Positives = 445/708 (62%), Gaps = 13/708 (1%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRPS L+PLF PL++ +G GK + ++++I + +DLL++ PS +DR + P Sbjct: 1 MRPSLLDPLFRPLTSLKGAGKTMAPLIARLIGG-----DKVVDLLWHLPSGLVDRRFSPL 55 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 I+E + +VT+T + H + PY+++ D +G +TL+FF+ + L ++ G Sbjct: 56 IAEAPDGVVVTLTVVVEAHQEPPPRSPSPYRVVCRDASGFVTLVFFHGRARYLNDLLPVG 115 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 ++GK+++ +VHP ++ ++ +E VY L G++ + ++I +AL Sbjct: 116 ETRVISGKVERFGGAPQIVHPTHVVPLAEAEAVCRVEPVYPLSGGVAGKVLARLIAQALD 175 Query: 181 RLP---VLP-EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 +P P EWI+ L ++ +P +A +H P +A+D PAR RLAYDELLA Sbjct: 176 DIPDPAAWPDEWIDAPLKAREGWPGWIDALRAVHAPEEAEDLRPDHPARRRLAYDELLAT 235 Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 Q+ALLL+R+ + G PI G + K+L +PF+ T +Q ++ +I DM+ RMLR Sbjct: 236 QLALLLVRRAARTVRGRPIVGTGALRAKVLAALPFALTGAQSRSLAEIDGDMASPARMLR 295 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 +LQGDVGSGKT+VAL+ M AVEAG QA +MAP ILA+QH E + + + + ++T Sbjct: 296 LLQGDVGSGKTVVALLTMLTAVEAGAQAALMAPTEILARQHIETLAPLCASAGVRLGLLT 355 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G R LE +A G+ I++GTHALFQD + + L +V+VDEQHRFGV QRL L+ Sbjct: 356 GRDKGRARAALLEALAAGEIDILVGTHALFQDDVVFAALAVVVVDEQHRFGVHQRLALSD 415 Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 K A VL+MTATPIPRTL LT GD+DIS++ EKP GR P T ++PI+R+D+VI + Sbjct: 416 KGRAVDVLVMTATPIPRTLTLTHYGDMDISRLDEKPPGRLPADTRVLPIDRLDDVIAAVA 475 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVER----FNSLHEHFTSSIAIIHGRMSDIDKES 532 + G K YW+CP IE+ + + + V+R + L + ++HGRM +K++ Sbjct: 476 RAIDGGAKVYWVCPLIEDSETGDMAAAVDRQALLADRLGPRLGPRVGLVHGRMKPGEKDA 535 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 VM++F LL+ATTVIEVG++V A++++IE+AE FGLAQLHQLRGR+GRG S+C Sbjct: 536 VMEAFSGNGLDLLVATTVIEVGVNVPSATVMVIEHAERFGLAQLHQLRGRIGRGGGRSTC 595 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +LLY PPL + + RL ++ T+DGF IAEEDL+ R GE+LG +QSG+P F + P L Sbjct: 596 LLLYAPPLGETARARLETMRRTDDGFEIAEEDLRLRGAGEVLGTRQSGLPVFRLIDPLLA 655 Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 + LL IARK A+ I+ DPDL G ++R+LLYL++ + A + +R+G Sbjct: 656 EDLLAIARKQAEVIVETDPDLAGPHGAALRVLLYLFERDAAVRTLRSG 703 >gi|326387811|ref|ZP_08209417.1| DEAD/DEAH box helicase-like protein [Novosphingobium nitrogenifigens DSM 19370] gi|326207857|gb|EGD58668.1| DEAD/DEAH box helicase-like protein [Novosphingobium nitrogenifigens DSM 19370] Length = 690 Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust. Identities = 285/704 (40%), Positives = 434/704 (61%), Gaps = 23/704 (3%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP LNPLFA + +GVG + L K+ TR DL+++ P F+ R + Sbjct: 6 MRPDLLNPLFAETESLKGVGPGLARPLEKL------GLTRVRDLVYHLPDRFVSRRAVTR 59 Query: 61 ISE--ISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI-TLLFFYRKTEMLKNVF 117 + E I E ++ +T + +H + R P+++L D G+I TL +F R + + + Sbjct: 60 LDEAGIGENIVIGLT--VREHRASA--GRGPFRVLAEDDAGDIVTLTYFGRASYTARKLL 115 Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + G++ + +VHP ++ +S ++ L E VY L GL+ ++ + Sbjct: 116 PVGERRWIAGRLDQFGQMRQIVHPDHVAQDSGELTAHLTEPVYPLSEGLTQGRIAGLVHQ 175 Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237 AL LP LPEW+E LL ++++P+ AEA H AK AR+RLAYDELLA Sbjct: 176 ALGHLPHLPEWVEPGLLAREAWPNWAEAVAEAHKGENAK-------ARDRLAYDELLANS 228 Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 +AL+L+R + G+P++ +G + +++ ++PFS T +Q+ AI ++ D++Q MLR+ Sbjct: 229 LALMLVRASNRTRRGLPLHGDGHLRKRL--DLPFSLTGAQQRAIAEVEADLAQGAPMLRL 286 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 LQGDVGSGKT VAL AM AVEAG QA ++AP ILA+QH E +++ T + + ++TG Sbjct: 287 LQGDVGSGKTAVALHAMLIAVEAGAQAAMLAPTEILARQHAETLRRMAAGTGVTIALLTG 346 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 R L + G I +GTHA+FQ+++ Y L LV++DEQHRFGV QRL LTQK Sbjct: 347 RDKGKAREATLMGLLDGSIQICVGTHAIFQEAVAYRNLALVVIDEQHRFGVGQRLMLTQK 406 Query: 418 A-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 A T H L MTATPIPRTL L G++D+S++ E P GR+PI T ++ +R++EVI + Sbjct: 407 ARTTAHCLAMTATPIPRTLTLAQYGEMDVSRLDEMPPGRQPIDTRVVSTDRVEEVIAGIG 466 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 L++G +AYW+CP + E++ + + R L E F + ++HG++ K++ M+ Sbjct: 467 RHLAKGGQAYWVCPMVREQETEDLAAAEARHALLKERFGDGVELVHGQLRPEAKDAAMER 526 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F G LL+ATTVIEVG+DV +A++++IE+AE FGLAQLHQLRGRVGRG S+C+LL Sbjct: 527 FARGEAGLLVATTVIEVGVDVPNATLMVIEHAERFGLAQLHQLRGRVGRGTGRSTCLLLR 586 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 LS+ RL++++ T+DGFL+AEEDL+ R GE+LG +QSG F +A + LL Sbjct: 587 GEALSETGRERLALMRETQDGFLLAEEDLRLRGGGELLGTRQSGDTPFRVASFDQIARLL 646 Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 +A DA+ ++ +D L+S RG++ R+LLYL++ + Q +R G Sbjct: 647 PLAHDDARLLMERDGGLSSPRGEAARVLLYLFERDWGVQLLRGG 690 >gi|304319852|ref|YP_003853495.1| ATP-dependent DNA helicase [Parvularcula bermudensis HTCC2503] gi|303298755|gb|ADM08354.1| ATP-dependent DNA helicase [Parvularcula bermudensis HTCC2503] Length = 701 Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust. Identities = 290/709 (40%), Positives = 415/709 (58%), Gaps = 17/709 (2%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP+ LN FA L++ GVG K + L K+ R IDLL P+ IDR YRPK Sbjct: 1 MRPAELNRYFADLTSLPGVGPKTAALLQKVAG------PRIIDLLLTGPTGLIDRSYRPK 54 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 + E R+ T+T ++ H+ +R PY+IL D TG +TL+FF K E L+ + Sbjct: 55 VGEAILGRVATVTVTVTAHTPPPTGRRLIPYRILTADDTGYLTLVFFRAKREWLETRYPV 114 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G +TV+G I M HP Y+ D P +E VY L GL++ +++ + AL Sbjct: 115 GTSLTVSGTIDDYGGARQMTHPDYMLRPDHDETLPEVEPVYPLTAGLTLPTYRRAVAAAL 174 Query: 180 SRLPVLPEW----IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235 R+ L EW +E D P A+A +H P+ +D +SPAR RLA DELL+ Sbjct: 175 RRVAPLAEWRAPPLEGD--GAPPLPDWADAVRTLHAPQSERDLSPSSPARRRLAADELLS 232 Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+R + ++ G + + + + +PF T +Q+ A+ +I+ DM RM+ Sbjct: 233 NQLALSLIRHRRQQIAGRALPGDPTLMEGGRAALPFRLTAAQDQALAEIVADMQSPARMV 292 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R+LQGDVGSGKT+VA A+ A+ +G Q +MAP ILA QH E ++ + + + Sbjct: 293 RLLQGDVGSGKTMVAFFALLQAIGSGVQGALMAPTEILALQHEETLRPLCDRLGLSLVTL 352 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 G R +A G ++IGTHAL + + + L L++VDEQHRFGV QRL L Sbjct: 353 LGRDKGPERAAKRRGVAEGYVPLVIGTHALLSEDVVFRDLGLIVVDEQHRFGVTQRLSLQ 412 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K +L+MTATPIPR+L LT+ GD+ +S+I EKP GRKP+ T +P R+DEV+ + Sbjct: 413 EKGRRADILVMTATPIPRSLALTTYGDMSVSQIREKPPGRKPVATRALPTTRLDEVMSAI 472 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 + G + YW+CP +EE + SV ER SL + IA +HGRMS +K++V+ Sbjct: 473 GRAAARGDQIYWVCPLVEENDQLALTSVTERAASLADATGLDIAAVHGRMSPQEKDAVVA 532 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F G +L+ATTVIEVG++ +A+I++IE+AE FGLAQLHQLRGRVGRG++ SSC+LL Sbjct: 533 RFARGDADVLVATTVIEVGVNTPNATIMVIEHAERFGLAQLHQLRGRVGRGDKPSSCLLL 592 Query: 596 YHPP----LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 Y L K + RL+ L+ TEDGF+IAE DL R G+ LG QSG +F Sbjct: 593 YSTGDGEQLGKTAKARLNTLRETEDGFVIAEADLALRGPGDALGTAQSGQARFRFGDLSA 652 Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 H +LE A ++A I+ DP L + RG ++R LLYL+ +EA + +R+G Sbjct: 653 HKDVLEWAHQEAADIVRHDPYLDTKRGAALRTLLYLFGQDEAARRLRSG 701 >gi|85373852|ref|YP_457914.1| DNA helicase [Erythrobacter litoralis HTCC2594] gi|84786935|gb|ABC63117.1| DNA helicase [Erythrobacter litoralis HTCC2594] Length = 687 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 278/702 (39%), Positives = 419/702 (59%), Gaps = 17/702 (2%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP LN LFA + T GVG K L K+ TR D+ ++ P F+ R Sbjct: 1 MRPDILNALFAEVDTLDGVGPKLKKPLDKL------GLTRVRDVAYHLPDRFVTRRAVQN 54 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI-TLLFFYRKTEMLKNVFFE 119 + E E + I ++H + R P+++ D G + L +F R + K + Sbjct: 55 LDEAGEGEQIVIQLTPTEHRGPRNPGRGPHRVFAQDAIGNVCALTYFGRASYSAKKLLPV 114 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G V GK+++ + + +VHP ++ + L E VY+L GL+ ++ +AL Sbjct: 115 GETRWVAGKLERYGDMLQIVHPDHVLEEGGESLQRLCEPVYALSEGLTQPKVAGLVSQAL 174 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 ++LP LPEWIE +K+ +P ++A + H AR+RLAYDELLA +A Sbjct: 175 TKLPELPEWIEPGQFEKEQWPIWSDALKLAHKSENGS-------ARDRLAYDELLANSLA 227 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+L+R ++ G + +G K+ +PF T +QE +I++I +DM Q+ MLR+LQ Sbjct: 228 LMLVRADNRQRKGRALVGDGSRIGKL--QLPFPLTGAQERSIREITEDMGQEAPMLRLLQ 285 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG+GKT+VAL M AVEAG QA ++AP ILA+QH+E ++ + T V ++TG Sbjct: 286 GDVGAGKTVVALETMLVAVEAGAQAALLAPTEILARQHFETLRDMARPTGTEVALLTGRD 345 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R L + G I++GTHA+FQD++QY L LV++DEQHRFGV QRL+L +K Sbjct: 346 KGRARESILMGLLDGSIDIVVGTHAIFQDAVQYRDLGLVVIDEQHRFGVAQRLQLARKGR 405 Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH L MTATPIPRTL L G++D+S++ E P GR+ I T ++ +R+ EV+E + Sbjct: 406 RTPHTLAMTATPIPRTLTLAQYGEMDVSRLDELPPGRQAIDTRVVGQDRLAEVVEGVGRH 465 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 + +G++AYW+CP + + + + + R+ +L E F ++ ++HG++ K++ M+ F Sbjct: 466 IDKGQQAYWVCPMVRDSETVDIAAAEARYAALKERFGDTVVLVHGQLEPAAKDAAMERFA 525 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 +G KLL+ATTVIEVG+DV A++++IE AE FGLAQLHQLRGRVGRG E S C+LL Sbjct: 526 SGEAKLLVATTVIEVGVDVPAATLMVIEQAERFGLAQLHQLRGRVGRGSEKSVCLLLRGE 585 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 LS RL++++ T+DGF IAEEDL+ R GE+LG +QSG F +A E LL + Sbjct: 586 ALSDTGRKRLALMRETQDGFRIAEEDLELRGGGELLGTRQSGDTPFRVADLEQIQRLLPV 645 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 A DA+ ++ +D L+S RG++ R+LLYL++ + Q +R G Sbjct: 646 AHADARLLIERDGGLSSERGEAARVLLYLFERDYGVQLLRGG 687 >gi|85708437|ref|ZP_01039503.1| DNA helicase [Erythrobacter sp. NAP1] gi|85689971|gb|EAQ29974.1| DNA helicase [Erythrobacter sp. NAP1] Length = 687 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 284/702 (40%), Positives = 427/702 (60%), Gaps = 17/702 (2%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP LNPLFA T GVG K + L K+ TR DL ++ P F+ R Sbjct: 1 MRPDILNPLFAESQTLDGVGPKLAKPLEKL------GLTRVKDLAYHLPERFVTRRAIAN 54 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI-TLLFFYRKTEMLKNVFFE 119 + E +E V + ++H + + R PY+++ D G + L +F R + K Sbjct: 55 LDEGAEGEQVIVALTATEHRAARNPGRGPYRVMAQDEVGNMCALTYFGRASYTAKKQLPV 114 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G K + G++ + + + +VHP ++ +S + E VYSL GL+ ++ ++L Sbjct: 115 GEKRWIAGRLDRYGDMLQIVHPDHVEKDSAAHLARMNEPVYSLSEGLTQPRVAGLVAQSL 174 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 RLP LPEWIE +++ +P+ +A ++ H + K AR+RLAYDELLA +A Sbjct: 175 ERLPELPEWIEPGQFEREGWPNWHDALHLAHKDQHEK-------ARDRLAYDELLANSLA 227 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LLL+R +++ G P+ + + ++ ++PF T +Q+ ++ +I D+ Q+ MLR+LQ Sbjct: 228 LLLVRADGRRKRGQPLKGDRSLRDRL--DLPFEMTGAQKRSVSEIEGDLQQEAPMLRLLQ 285 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG+GKT+VAL AM AVEAG QA ++AP ILA+QH+E ++K T V I+TG Sbjct: 286 GDVGAGKTVVALEAMLIAVEAGKQAALLAPTEILARQHFETLRKMAAPTGAEVAILTGRA 345 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R L + +G I++GTHA+FQDS+ Y L LV++DEQHRFGVQQRL L K Sbjct: 346 KGREREGLLMSLLNGDIDILVGTHAIFQDSVTYKDLALVVIDEQHRFGVQQRLALAAKGK 405 Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 APH L MTATPIPR+L L G++D+S++ E P GR+ I T ++ R+++++ ++ Sbjct: 406 RAPHTLAMTATPIPRSLTLAQYGEMDVSRLDELPPGRQAIDTRVVAQERMEDIVSGVERH 465 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 L+ G++AYW+CP + + + ++ + R+ SL E F + ++HG++ K++ M+ F Sbjct: 466 LATGQQAYWVCPMVRDSETADIAAAEARYASLKERFGDDVVLVHGQLRPEIKDANMERFA 525 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 +G KLLIATTVIEVG+DV A++++IE AE FGLAQLHQLRGRVGRG E S C+LL Sbjct: 526 SGGSKLLIATTVIEVGVDVPSATLMVIEQAERFGLAQLHQLRGRVGRGSEKSVCLLLRGG 585 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 LS+ RL++++ T+DGF IAEEDL+ R GE+LG +QSG F IA E LL Sbjct: 586 ELSEAGRKRLALMRETQDGFRIAEEDLELRGGGELLGTRQSGEAAFRIANLEQVQKLLPA 645 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 A DA+ ++ +D LTS RG++ R+LLYL++ + Q +R G Sbjct: 646 AHADARLLIDRDGGLTSQRGEAARVLLYLFERDWGVQLLRGG 687 >gi|87199996|ref|YP_497253.1| DEAD/DEAH box helicase-like [Novosphingobium aromaticivorans DSM 12444] gi|87135677|gb|ABD26419.1| DEAD/DEAH box helicase-like protein [Novosphingobium aromaticivorans DSM 12444] Length = 685 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 284/704 (40%), Positives = 424/704 (60%), Gaps = 23/704 (3%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP LNPLFA S+ +GVG + L K+ TR D ++ P F+ R Sbjct: 1 MRPDLLNPLFAEASSLKGVGPGLARPLEKL------GLTRVKDFAYHLPDRFVLRRAIAN 54 Query: 61 ISEIS--EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVF 117 + E S E+ +V +T + S+ R P++++ D +G + L +F R + K Sbjct: 55 LDEASVGEQIVVALTPRDYRQSA----GRGPFRVMAEDESGSFVALTYFGRASYTAKKQL 110 Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G K V G++ + +VHP ++ +S + L E VY L GL+ + ++ + Sbjct: 111 PLGEKRWVAGRLDQFGQTWQIVHPDHVSDDSAGMLGQLNEPVYPLSEGLTQGRLQGLVHQ 170 Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237 +L+ LP LPEWIE L Q+ +P+ EA + H AR+RLAYDELLA Sbjct: 171 SLAHLPQLPEWIEPGLAQRMDWPAWHEALPLAHKGEH-------KAARDRLAYDELLANS 223 Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 +AL+L+R+ + G P++ +G + K+ N+PF T +Q+ +I +I D++Q MLR+ Sbjct: 224 LALILVRESNRSRQGTPLHGDGHLRAKL--NLPFDLTGAQKRSIAEIEGDVAQGAPMLRL 281 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 LQGDVGSGKT VAL AM AVE+G QA ++AP ILA+QH + + K T + + ++TG Sbjct: 282 LQGDVGSGKTAVALNAMLIAVESGAQAALLAPTEILARQHADTLSKMAVGTGVNIALLTG 341 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 R L + G I +GTHA+FQ+++ Y L LV++DEQHRFGV QRL LTQK Sbjct: 342 RDKGRARESILMGLLDGSIDICVGTHAIFQEAVAYRNLALVVIDEQHRFGVGQRLMLTQK 401 Query: 418 AT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 A PH L MTATPIPRTL L G++D+S++ E P GR+ I T ++ R+ +VIE + Sbjct: 402 ARRTPHCLAMTATPIPRTLTLAQYGEMDVSRLDEMPPGRQAIDTRVVAQERLADVIEGVG 461 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 +++G +AYW+CP + E++ + + RF +L E F + ++HG++ K++ M+ Sbjct: 462 RHIAKGAQAYWVCPMVREQENDDMAAAEARFAALKERFGDMVVMVHGQLRPEVKDAAMER 521 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F G KLL+ATTVIEVG+DV +A++++IE AE FGLAQLHQLRGRVGRG + S+C+LL Sbjct: 522 FARGDAKLLVATTVIEVGVDVPNATLMVIEQAERFGLAQLHQLRGRVGRGSQQSTCLLLR 581 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 LS+ RL++++ T+DGF +AEEDL+ R GE+LG +QSG F +A E LL Sbjct: 582 GDALSETGRERLALMRETQDGFRLAEEDLRLRGGGELLGTRQSGETPFKVADFEQIAKLL 641 Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 +A DA+ ++ +D L+S RGQ+ R+LLYL++ + Q +R G Sbjct: 642 PLAHDDARLLMERDGGLSSPRGQAARVLLYLFERDWGVQLLRGG 685 >gi|329850697|ref|ZP_08265542.1| DEAD/DEAH box helicase family protein [Asticcacaulis biprosthecum C19] gi|328841012|gb|EGF90583.1| DEAD/DEAH box helicase family protein [Asticcacaulis biprosthecum C19] Length = 688 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 287/695 (41%), Positives = 409/695 (58%), Gaps = 19/695 (2%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP- 59 MRP L P +A ++T +GVG K + L++ + + DL F+ PS I R P Sbjct: 1 MRPEILFPYYADVTTLKGVGPKLAPVLAQHVG------SHIRDLAFFLPSGVIKRPLVPL 54 Query: 60 ---KISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNV 116 +I E+ + VTI GY + + P +I D T +TL++F+R + Sbjct: 55 NRARIGEV-QTVAVTIAGYPPAPA------KGPQRIETVDDTTRLTLVYFHR-IRGFETQ 106 Query: 117 FFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIV 176 G K ++GK++ N++ M HP Y+ ++ P E VY L +K++ Sbjct: 107 HPVGSKRLISGKLESFNNQLQMPHPDYLVDEARAAEIPACEPVYPATLDLGSRTLRKLVQ 166 Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 ALS P LPEW++ ++ K +PS A H P D + + R+RLAYDE LA Sbjct: 167 GALSITPELPEWLDLAMVDKYLWPSFHAALAAAHTPLSELDLDPDAKPRQRLAYDEALAH 226 Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 Q+AL RKQF++ + A + L +PF+ T +Q A+ DI D+ +RM R Sbjct: 227 QLALK-ARKQFRQNTPSRVIDRHAWADRALTTLPFAMTGAQVRALADIRGDLRSGHRMNR 285 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 ++QGDVG+GKTLVAL+AM E G Q+V+MAP ILA+QH+E + I I+T Sbjct: 286 LVQGDVGAGKTLVALMAMIDVAEDGLQSVLMAPTEILARQHFEKSHSILEALGISSTIMT 345 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G R + +A G+A ++ GTHA+FQ+ + ++ L L ++DEQHRFGV QR KL Sbjct: 346 GRDKGKERDRKRAAVASGEAQVVFGTHAVFQEGVDFHSLQLAVIDEQHRFGVGQRQKLFS 405 Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 K A H L M+ATPIPRTL LT G+ D+S + EKPAGR+PI T ++P R+ +V+ RLK Sbjct: 406 KGEAVHYLSMSATPIPRTLALTQYGEADLSILDEKPAGRQPIHTAVVPRARLADVMHRLK 465 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 L++G++AYW+CP +E+ ES+ + +R L E + ++HGRM K++V+ Sbjct: 466 GALADGQQAYWVCPLVEDTAESDLIAAEKRHEELQEALGIEVGLVHGRMPSETKDNVVTR 525 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F G ++L ATTV+EVGIDV ASIIIIE AE FGLAQLHQLRGRVGRG S+CILLY Sbjct: 526 FAAGELRVLCATTVVEVGIDVPTASIIIIEQAERFGLAQLHQLRGRVGRGAAKSACILLY 585 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PLSKN+ RL +L++TEDGF IAE D K R EG+ILG KQSG P + P H +L+ Sbjct: 586 DSPLSKNAKARLELLRDTEDGFKIAEMDWKLRGEGDILGAKQSGFPDYRFVDPVRHTALI 645 Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691 +A ++A +IL Q L + R ++I +L L+ + Sbjct: 646 ALAAREAVYILHQGDALPAPRRKAIEVLKQLFDWR 680 >gi|332186177|ref|ZP_08387923.1| OB-fold nucleic acid binding domain protein [Sphingomonas sp. S17] gi|332013992|gb|EGI56051.1| OB-fold nucleic acid binding domain protein [Sphingomonas sp. S17] Length = 684 Score = 522 bits (1344), Expect = e-146, Method: Compositional matrix adjust. Identities = 279/703 (39%), Positives = 433/703 (61%), Gaps = 22/703 (3%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP LNPLFA +++ +GVG + L ++ R +D+ F+ P+ IDR R + Sbjct: 1 MRPDILNPLFAEVTSLKGVGPGLAKPLERL------RIARVVDVAFHLPTGHIDRFPRDE 54 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFE 119 + R++ I+ + +H R P ++ D G + L++F + +K + Sbjct: 55 LMVSDAGRVIAISLTVKEHR-VSSSPRGPTRVRAEDARGNSVALVYFGGNSGWVKKLLPV 113 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G V+G++ + +VHP + +++D F EA+Y L G++ + +A+ Sbjct: 114 GETKIVSGRLDLYGQDLQIVHPD-LGDSTED--FREREAIYPLSEGITSRRLGALAAQAV 170 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIH-NPRKAKDFEWTSPARERLAYDELLAGQI 238 R P LPEWIE L ++ +P +A IH +P AK ARERL YDE+ A Q+ Sbjct: 171 ERAPELPEWIEPGLKAQRGWPDWKDALARIHADPADAK-------ARERLGYDEVFANQL 223 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 A+ L+R +K G +N +G++ + + +P++ T +Q +++I D++Q MLR+L Sbjct: 224 AMTLVRADTRKRRGRALNGDGRL--RDMLKLPYTLTGAQSRTVREIEGDLAQDAPMLRLL 281 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVG+GKTLVA +AM AVEAG QA ++AP ILA+QHYE ++K + + ++TG Sbjct: 282 QGDVGAGKTLVAAMAMLIAVEAGAQAAMLAPTEILARQHYETLRKTLAGLPVEIAVLTGR 341 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R L +A G+ I++GTHA+FQ+++ Y L LV+VDEQHRFGV QR+ L+ K Sbjct: 342 DKGKAREATLMALAAGEIDILVGTHAIFQETVTYRDLALVVVDEQHRFGVAQRMMLSAKG 401 Query: 419 TAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 AP H+L MTATPIPRTL L + G++D+S++ E P GR+PI+T ++ +R+DEV+ L Sbjct: 402 KAPPHLLAMTATPIPRTLTLANYGEMDVSRLDEMPPGRQPIETRVVSEDRLDEVVNALGR 461 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537 LS+G +AYW+CP +EE ++S+ + R SL F + ++HG+M +K++VM++F Sbjct: 462 HLSDGGQAYWVCPLVEESEKSDLAAAEMRAESLRARFGERVGLVHGKMKPAEKDAVMEAF 521 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 G +L+ATTVIEVG+DV +A++I+IE+A+ FGLAQLHQLRGRVGRG +S C+LL Sbjct: 522 AGGRLGVLVATTVIEVGVDVPNATLIVIEHADRFGLAQLHQLRGRVGRGGGLSRCLLLRG 581 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 LS+ S RL++++ T DGF IAEEDL+ R GE+LG +QSG F +A PE L++ Sbjct: 582 SHLSETSRARLALMRETNDGFRIAEEDLRLRGAGELLGTRQSGELAFRLATPENMADLMQ 641 Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 A+ DA+ ++ +D L + RGQ+ R LYL++ + +R+G Sbjct: 642 CAQDDARLLIDRDGGLEAPRGQAARTALYLFERDAGVALLRSG 684 >gi|197105084|ref|YP_002130461.1| ATP-dependent DNA helicase RecG [Phenylobacterium zucineum HLK1] gi|196478504|gb|ACG78032.1| ATP-dependent DNA helicase RecG [Phenylobacterium zucineum HLK1] Length = 691 Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust. Identities = 286/705 (40%), Positives = 419/705 (59%), Gaps = 19/705 (2%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP L PLFAP+++ +GVG + + L K+ D+L+ P S I R P Sbjct: 1 MRPEILFPLFAPITSLKGVGPRVAPLLEKVAG------PIVRDVLWLKPHSLIRRT--PA 52 Query: 61 ISEISEERI-----VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKN 115 + + + V I GY + + K +P+++ + D TG +TL+FF R + L Sbjct: 53 VLSAARDGETMTFEVAIHGYQAPRT-----KAQPWRVQVTDPTGFMTLVFFGRYGDQLAQ 107 Query: 116 VFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKII 175 G + V+GK+++ MVHP YI + P +EAVY GL + + Sbjct: 108 RHPVGARRIVSGKVEESSFGRQMVHPDYILPPEKAGEIPELEAVYPATEGLPARRVRGFV 167 Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235 +EAL R P LPEW + L+++ FP+ A +HNP+ D SP R RLA+DELLA Sbjct: 168 LEALERAPELPEWQDPAFLRQEQFPAWRAAMERLHNPQSEADLSLLSPHRRRLAFDELLA 227 Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+A+ + ++E + A+KI ++PF T +QE A+ +I D+S RM Sbjct: 228 HQLAMAQRKAARRREPAA-RVAASETAEKIRADLPFRFTGAQERALAEIRADLSAGERMS 286 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA+ AMA +GGQ+ +MAP ILA+QHYE I + ++ Sbjct: 287 RLVQGDVGSGKTVVAMCAMADVAASGGQSALMAPTEILARQHYETISGPLAAHGVGTVLL 346 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 TG A RR+ L +A G+A + +GTHALFQD + + KL LV++DEQHRFGV +R +L Sbjct: 347 TGRDKGAARREKLAALASGEARVAVGTHALFQDEVAFQKLQLVVIDEQHRFGVAERQRLQ 406 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 K A H++ M+ATPIPRTL LT GD+D+S+I EKP GR P+ T P+ R EV RL Sbjct: 407 AKGEATHLIAMSATPIPRTLELTVYGDLDVSRIDEKPPGRTPVATRAAPMTRAHEVEARL 466 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 + + G +A+WICP + E + ++ + R L E S+ ++HGR+ K++VM Sbjct: 467 REAVQGGAQAFWICPLVSESEATDLAAAERRAAELTERIGPSVGLVHGRLPPAAKDAVMA 526 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F G +L+ATTV+EVG++V +A+I++IE AE FGLAQLHQLRGRVGRG S+C+LL Sbjct: 527 EFAEGRLSVLVATTVVEVGVNVPNATIMVIEQAERFGLAQLHQLRGRVGRGRRESACVLL 586 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PPLS+ + RL +L+ T+DGF+IAE+DL+ R G+ LG++QSG P + A P H L Sbjct: 587 YDPPLSETAQQRLDILRRTDDGFVIAEKDLELRGGGDALGLRQSGFPDYAFADPIAHRDL 646 Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 + A DA+ I+ +DP+L RG+++++L L+ + AG Sbjct: 647 IAAAGDDARLIVMRDPELAGERGKALQVLQELFDWKANLGLRDAG 691 >gi|296283913|ref|ZP_06861911.1| DNA helicase [Citromicrobium bathyomarinum JL354] Length = 687 Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust. Identities = 285/703 (40%), Positives = 427/703 (60%), Gaps = 19/703 (2%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP LNPLFA + T GVG K L K+ C TR D+ ++ P F+ R Sbjct: 1 MRPEILNPLFAEVDTLDGVGPKLKKPLEKL-RC-----TRVRDIAYHWPDRFVTRRPVET 54 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI-TLLFFYRKTEMLKNVFFE 119 + E E + I +++H S +R PY++L D G + L FF R + K Sbjct: 55 LDEAGEGEQIIIALTVTEHRSGA-SRRAPYRVLATDSAGNVLALTFFGRASYTAKKQLPV 113 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G K V GK+++ + + MVHP ++ + E VYSL GL+ + +AL Sbjct: 114 GEKRRVAGKLERYGDMLQMVHPDHVMKLDDAGLGQMREPVYSLAEGLTQPRMASLAAQAL 173 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 +LP LPEWIE +L ++ +P+ EA +H A+D E A++RLAYDELLA +A Sbjct: 174 EKLPDLPEWIEPGMLAQQKWPAWGEALRSVH----ARDDE---TAKDRLAYDELLANALA 226 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L++ +++ G P+ +G + K+ +PF T +QE +I++I D++Q MLR+LQ Sbjct: 227 LQLVKADNRRKRGRPLAGDGHLRDKL--QLPFPLTGAQERSIREIEGDLAQDAPMLRLLQ 284 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG+GKT+VAL AM AVEAG QA ++AP ILA+QH+E +++ + T + V ++TG Sbjct: 285 GDVGAGKTVVALHAMLVAVEAGAQAALLAPTEILARQHFETLREMARPTGVEVALLTGRD 344 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R L + G I++GTHA+FQ+++QY L LV+VDEQHRFGV QRL++ K Sbjct: 345 KGRARESILMGLMDGSIQIVVGTHAIFQEAVQYRDLGLVVVDEQHRFGVSQRLQMAGKGK 404 Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH L MTATPIPRTL L + G++++S++ E P GR+ I T ++ ++R+ EV+E + Sbjct: 405 RPPHTLSMTATPIPRTLTLANYGEMEVSRLDELPPGRQAIDTRVVGMDRLPEVVEAVGRH 464 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 L+ G++AYW+CP + +++ + +R+ +L F ++ ++HG++ K++ M F Sbjct: 465 LASGQQAYWVCPMVRDEEGMEKAAAEQRYAALKARFDDDAVVMVHGQLDPEVKDAAMARF 524 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 +G KLL+ATTVIEVG+DV +++I+IE AE FGLAQLHQLRGRVGRG E S C+LL Sbjct: 525 ASGQAKLLVATTVIEVGVDVPASTLIVIEQAESFGLAQLHQLRGRVGRGSEKSVCLLLRG 584 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 LS+ RL++++ T+DGF IAEEDL+ R GE+LG +QSG F IA + L+ Sbjct: 585 NQLSETGQRRLALMRETQDGFRIAEEDLELRGGGELLGTRQSGDTPFRIATLDQMQRFLD 644 Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 A DAK ++ +D L RG++ R+LLYL + + + +R G Sbjct: 645 PATADAKLLMDRDAGLEGERGEAARVLLYLMERDMGVRTLRGG 687 >gi|326403948|ref|YP_004284030.1| ATP-dependent DNA helicase RecG [Acidiphilium multivorum AIU301] gi|325050810|dbj|BAJ81148.1| ATP-dependent DNA helicase RecG [Acidiphilium multivorum AIU301] Length = 687 Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust. Identities = 271/697 (38%), Positives = 427/697 (61%), Gaps = 20/697 (2%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 L P A L++ G+G K + +++ + + DLLF+ P FIDR + ++E Sbjct: 9 LAPFRAELASLPGIGPKLAALIARAVGGPSVG-----DLLFHLPLHFIDRSRQSTLAEAE 63 Query: 66 EERIVTITGYISQHSSFQLQKRRPYKILLND--GTGEITLLFFYRKTEMLKNVFFEGRKI 123 + T+ + +H + ++ +P+++++ D G GE+ L R + F G K+ Sbjct: 64 PGSVATVMVEVVRHEA-PARRGQPHRVVIRDASGFGEVVLFHPGRLGQ-----FPVGAKL 117 Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183 ++GKI++ +R + HP Y+ +Q + P IE V L GL+ + + + AL+RLP Sbjct: 118 LLSGKIERFADRPTLPHPDYVLPAAQAASLPAIEPVRGLTAGLTARVMARAVDGALARLP 177 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 LPEW +LQK+ +P A +H P D PAR RLAYDELLA Q+A L+ Sbjct: 178 ELPEWQLPSVLQKRRWPGFTAALRTLHAPESMPD---DRPAR-RLAYDELLARQLAFALI 233 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 R + ++ G +G++ L F+PT +Q +A+ +I D++ +RMLR+LQGDVG Sbjct: 234 RARRRRRPGRAFTGDGRLRAAALARFGFAPTDAQAAALAEIDADLAAPHRMLRLLQGDVG 293 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 +GKTLVA +AM VEAG QA ++AP +LA+QH ++K + V ++TG++ A Sbjct: 294 AGKTLVATLAMLRVVEAGAQAALLAPTELLARQHLATLEKLCP---VPVALLTGSLRAAE 350 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR L +A G I++GTHA+FQ S+ ++ L L ++DEQHRFGV+QR L K +A + Sbjct: 351 RRLVLAGLADGSIPIVVGTHAIFQKSVAFHDLGLAVIDEQHRFGVEQRFALGAKGSATDM 410 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL+L+ G++ +S+I KPAGRKPI+T + P R++E++ + ++ G Sbjct: 411 LVMTATPIPRTLLLSHWGEMSVSRILAKPAGRKPIRTTLHPAGRMEEIVAAVARMIRRGG 470 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543 + YW+CP + E + + + RF +L E F + + HGR + + ++ F G Sbjct: 471 RVYWVCPLVAESEAVDIAAAEARFAALAERFGDRVVLAHGRQPIEIRAAALERFARGEAD 530 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG+DV +A++++IE A+ FGLAQLHQLRGRVGRG S C+LL+ LS+ Sbjct: 531 ILVSTTVIEVGVDVPEANVMVIERADRFGLAQLHQLRGRVGRGAAASFCLLLHGDELSQA 590 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 + RL++L+ TEDGF IA+ED + R G+ILG KQSG+P + +A E + L+ +A+KDA Sbjct: 591 ARRRLAILRETEDGFRIADEDFRLRGGGDILGAKQSGLPGYRLADAERDEDLIPMAQKDA 650 Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 +L DP L + RG++ R+LL+L++ + A + + AG Sbjct: 651 TLLLDTDPHLETPRGRAARVLLHLFEQDRAIRALVAG 687 >gi|148260751|ref|YP_001234878.1| DEAD/DEAH box helicase domain-containing protein [Acidiphilium cryptum JF-5] gi|146402432|gb|ABQ30959.1| DEAD/DEAH box helicase domain protein [Acidiphilium cryptum JF-5] Length = 723 Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust. Identities = 272/697 (39%), Positives = 427/697 (61%), Gaps = 20/697 (2%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 L P A L++ G+G K + +++ + + DLLF+ P FIDR + ++E Sbjct: 45 LAPFRAELASLPGIGPKLAALIARAVGGPSVG-----DLLFHLPLHFIDRSRQSTLAEAE 99 Query: 66 EERIVTITGYISQHSSFQLQKRRPYKILLND--GTGEITLLFFYRKTEMLKNVFFEGRKI 123 + T+ + +H + ++ +P+++++ D G GE+ L R + F G K+ Sbjct: 100 PGSVATVMVEVVRHEA-PARRGQPHRVVIRDASGFGEVVLFHPGRLGQ-----FPVGAKL 153 Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183 ++GKI++ +R + HP Y+ +Q + P IE V L GL+ + + + AL+RLP Sbjct: 154 LLSGKIERFADRPTLPHPDYVLPAAQAASLPAIEPVRGLTAGLTARVMARAVDGALARLP 213 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 LPEW +LQK+ +P A +H P D PAR RLAYDELLA Q+A L+ Sbjct: 214 ELPEWQLPSVLQKRRWPGFTAALRTLHAPESMPD---DRPAR-RLAYDELLARQLAFALI 269 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 R + ++ G +G++ L F+PT +Q +A+ +I D++ +RMLR+LQGDVG Sbjct: 270 RARRRRRPGRAFAGDGRLRAAALARFGFAPTDAQAAALAEIDADLAAPHRMLRLLQGDVG 329 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 +GKTLVA +AM VEAG QA ++AP +LA+QH ++K + V ++TG++ A Sbjct: 330 AGKTLVATLAMLRVVEAGAQAALLAPTELLARQHLATLEKLCP---VPVALLTGSLRAAE 386 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR L +A G I++GTHA+FQ S+ ++ L L ++DEQHRFGV+QR L K +A + Sbjct: 387 RRLVLAGLADGAIPIVVGTHAIFQKSVAFHDLGLAVIDEQHRFGVEQRFALGAKGSATDM 446 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL+L+ G++ +S+I KPAGRKPI+T + P R++E++ + ++ G Sbjct: 447 LVMTATPIPRTLLLSHWGEMSVSRILAKPAGRKPIRTTLHPAGRMEEIVAAVARMIRRGG 506 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543 + YW+CP + E + + + RF +L E F + + HGR + + ++ F G Sbjct: 507 RVYWVCPLVAESEAVDIAAAEARFAALAERFGERVVLAHGRQPIEIRAAALERFARGEAD 566 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG+DV +A++++IE A+ FGLAQLHQLRGRVGRG S C+LL+ LS+ Sbjct: 567 ILVSTTVIEVGVDVPEANVMVIERADRFGLAQLHQLRGRVGRGAAASFCLLLHGDELSQA 626 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 + RL++L+ TEDGF IA+ED + R G+ILG KQSG+P + +A E + L+ +A+KDA Sbjct: 627 ARRRLAILRETEDGFRIADEDFRLRGGGDILGAKQSGLPGYRLADAERDEDLIPMAQKDA 686 Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 +L DP L S RG++ R+LL+L++ + A + + AG Sbjct: 687 TLLLDTDPHLESPRGRAARVLLHLFEQDRAIRALVAG 723 >gi|254293940|ref|YP_003059963.1| DEAD/DEAH box helicase [Hirschia baltica ATCC 49814] gi|254042471|gb|ACT59266.1| DEAD/DEAH box helicase domain protein [Hirschia baltica ATCC 49814] Length = 687 Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust. Identities = 275/696 (39%), Positives = 418/696 (60%), Gaps = 9/696 (1%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP L P F L + G+G K + L +++ ++LL + P ++IDR R Sbjct: 1 MRPEILFPFFKDLKSLPGIGPKTAPLLQRLVGGDTV-----LNLLLHLPINWIDRSVRDS 55 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 E I T+ G + S F Q P ++ L D TG +TL+FF + L+ F Sbjct: 56 FFETIVGEIATVRGVVD--SVFAGQGNAPTRVRLLDDTGFLTLVFFRAQPAWLQKQFPMN 113 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 +++ V+G I+ + MVHP ++ + ++ P +E VY L G++ L +K I +L Sbjct: 114 QEMIVSGLIEDFNGQRQMVHPDHVCNPAKGEEPPEVEPVYRLTAGVTSRLLQKAISASLE 173 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 LP LPEWI++ L++K +PS +A +H P + D + A ERLAYDE LA + AL Sbjct: 174 NLPQLPEWIDQAFLEQKKWPSFVDALKQLHQP-ETLDQPALNLAHERLAYDEALAREFAL 232 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 +R +K PI +L + FSPT +Q A KDI D++++ M R+LQG Sbjct: 233 NEIRLNRQKTPATPIPRHTHATNNLLEALKFSPTHAQLRAFKDIQTDLARELPMRRMLQG 292 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVG+GKTLVA +A+A A +G + M+P +LA+Q ++ + + E +TG Sbjct: 293 DVGTGKTLVAALAIAQAAASGQFSAFMSPTEVLARQQATALQNFLKPIGYRCEALTGRDS 352 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 + R++ L+ +A G+ H + GT ALFQ +Q L LVI+DEQHRFGV RLKLT K A Sbjct: 353 KKRRKELLDAVAAGEIHCLSGTQALFQTDVQLPNLGLVIIDEQHRFGVADRLKLTSKGNA 412 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 PH+L+M+ATPIPR+L GD+D + EKP RKPI T + RI++V+ + Sbjct: 413 PHMLMMSATPIPRSLAAAINGDLDTCILDEKPQQRKPITTRVASEERIEDVMIAVAKAAD 472 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540 G++A+W+CP I+ + + SV+ R L ++ +A++HG+M+ +K++ +D+F+ G Sbjct: 473 RGERAFWVCPAIDSETAED-ASVIARKEILQKYVKHPVALVHGKMAPAEKDAALDAFRTG 531 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L+ATTV+EVGIDV +A+I++IE+AE FGLAQLHQLRGRVGRG++ SSC+LLY PPL Sbjct: 532 EASVLVATTVVEVGIDVPEATIMVIEHAEGFGLAQLHQLRGRVGRGDKSSSCLLLYKPPL 591 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S++ RL+ L+ TEDGFLIAE D KQR G++LG+KQSG+P F I H + ++ R Sbjct: 592 SESGQKRLNTLRETEDGFLIAEADFKQRGPGDLLGLKQSGLPNFKIIDLTRHIEMFQLVR 651 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696 D K +L++ P+ R ++I +L L++ + A ++ Sbjct: 652 NDVKQLLSEGPNSNPPRTEAISLLNELFKTDIAIKY 687 >gi|114797135|ref|YP_760687.1| putative ATP-dependent DNA helicase recG [Hyphomonas neptunium ATCC 15444] gi|114737309|gb|ABI75434.1| putative ATP-dependent DNA helicase recG [Hyphomonas neptunium ATCC 15444] Length = 692 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 274/685 (40%), Positives = 406/685 (59%), Gaps = 12/685 (1%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MR L PLFA L T GVG K + L K++ T DL+ + P ++DR R Sbjct: 1 MRDERLFPLFAGLETLTGVGPKMTPLLQKLVGG-----TTVWDLVLHLPDRWLDRRVRAN 55 Query: 61 ISEISEERIVTITGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 E +VT+ G + + H F R P+++ L D TG +TL +F +K+ F Sbjct: 56 FDETVPGEVVTVKGEVHAYHQPFN--DRSPHRVQLVDSTGFLTLSYFRADPRWMKSQFPI 113 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G V+G++++ + + HP ++ ++ P +E +YSL GL+ + ++AL Sbjct: 114 GATRIVSGRVEEYRGERQITHPDFVVDPAKGEAPPAVEPIYSLSAGLTNRRVHTLALQAL 173 Query: 180 SRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 S +P LPEW + L+ +K +P+ EA + H+P K D + + ARERLAYDE LA + Sbjct: 174 SLVPDDLPEWADPHLVAQKGWPAFKEALSWQHDP-KVYDEDRFALARERLAYDEALARES 232 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 A L + ++ I +++ +P+ PT +Q A DI D+++ M R+L Sbjct: 233 AFALAQAARRQRPAPIIKAPPSAVNRLIDALPYRPTGAQMRAAADISSDVARGYPMRRLL 292 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVG+GKTLVA A A AG Q+ MAP +LA+Q Y+ + V ++G Sbjct: 293 QGDVGAGKTLVAAFAAVEAAAAGFQSAFMAPTEVLARQQYDTLDALLSPLGYTVAALSGR 352 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + R L +A G I+ GTHALFQ+++ + L L+IVDEQHRFGV R+KL K+ Sbjct: 353 DRGSAREATLMGLADGSIQIVAGTHALFQEAVNFRNLGLIIVDEQHRFGVSDRMKLAGKS 412 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH+L+M+ATPIPRTL GD+D+S + EKP GRKP++T +P R+++VIE + Sbjct: 413 ENPHMLVMSATPIPRTLAQAVHGDLDVSILDEKPPGRKPVETRAVPDTRLEDVIEAIGRA 472 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 L G++A+W+CP+++ E + S V R +L E ++HGR+ +K++ ++ F+ Sbjct: 473 LKRGERAFWVCPRVD--IEDDDSSAVVRHAALEEELHVKAGLVHGRLKASEKDAALEDFR 530 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G ++L+ATTVIEVG+DV +A+I++IE AE FGLAQLHQLRGRVGRG++ S C+LLY P Sbjct: 531 TGRTRILVATTVIEVGVDVPEATIMVIERAEGFGLAQLHQLRGRVGRGDKPSFCLLLYRP 590 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PL + RL L+ TEDGF IAE D + R G++LG++Q+GM + I H +LLEI Sbjct: 591 PLGDTARERLDTLRRTEDGFEIAEADFRLRGAGDVLGVRQAGMTDYRIIDLAKHAALLEI 650 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRI 683 ARKDA+ +LT DPD R QS+RI Sbjct: 651 ARKDAEAVLTGDPDRKGERWQSLRI 675 >gi|329889843|ref|ZP_08268186.1| DEAD/DEAH box helicase family protein [Brevundimonas diminuta ATCC 11568] gi|328845144|gb|EGF94708.1| DEAD/DEAH box helicase family protein [Brevundimonas diminuta ATCC 11568] Length = 696 Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust. Identities = 281/701 (40%), Positives = 412/701 (58%), Gaps = 22/701 (3%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP L PLFA +ST +GVG + + + K+ D+LF PS I R Sbjct: 1 MRPEILFPLFADVSTLKGVGPRSAPLVQKVAG------PLVRDVLFLSPSGVIQRRRTTA 54 Query: 61 ISEISEE---RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVF 117 + + E VTI I H + P K+ D TG I L++F ++++ Sbjct: 55 MEAVDGEIGVFEVTIDRLIPPH-----KHGAPIKVRAIDDTGFIHLIWFAGSPRHIESLA 109 Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + VTGK+++ + + + HP YI + PL E VY GL+ +K+ Sbjct: 110 PRGARRLVTGKVERFNSEVQIAHPDYIMPVEKADEIPLSEPVYPATQGLTSRQIRKLAQG 169 Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237 AL+ P LPEW E + L + + A +H P D +P R+RLAYDEL A Q Sbjct: 170 ALALAPELPEWQELNWLAARRWVGWRAALEALHAPTNEADLTPDTPVRQRLAYDELFAHQ 229 Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 +AL R+ + I G+ + ++ +PF+ T++QE A+ +I D+S +M R+ Sbjct: 230 LALARRRRARQITPAARI-APGEASARLPAALPFALTRAQEQAVAEIRADLSSGEQMGRL 288 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 LQGDVGSGKT VA +A+A A G QA +MAP ILA+QHY+ + + ++TG Sbjct: 289 LQGDVGSGKTAVAALALADAASNGFQAALMAPTEILARQHYDKLSPLLNQAGVRSLLLTG 348 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 A RR L +A G+A + IGTHALFQD++Q+++L L ++DEQHRFGV++R +L K Sbjct: 349 RDTPAERRGKLAALASGEAQVAIGTHALFQDAVQFHRLALAVIDEQHRFGVRERQRLQAK 408 Query: 418 ATAP----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 H+L M+ATPIPRTL LT G++++S++ EKP GR P+ T ++P+ RI EV + Sbjct: 409 GDPALGGVHLLTMSATPIPRTLELTQYGELEVSRLMEKPPGRTPVTTAVLPLARIGEVAK 468 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 RLK + G +AYWICP + E + + + +R L ++ + + + HG+M ++E+V Sbjct: 469 RLKAAVQAGAQAYWICPLVAESEAIDLAAAEDRAEDLRKYLGTEVGLAHGQMPGAEREAV 528 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M F +G +L+ATTV+EVG+DV +ASI++IE+A+ FGLAQLHQLRGRVGRG + S+CI Sbjct: 529 MAEFADGRLPVLVATTVVEVGVDVPNASIMVIEHADRFGLAQLHQLRGRVGRGAKASACI 588 Query: 594 LLY---HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 LLY L + + RL L+ TEDGF+IAEED + R G+ LG+KQSG P + A P Sbjct: 589 LLYGGEDGALGETAKERLETLRRTEDGFVIAEEDFRLRGGGDPLGLKQSGFPAYRFADPI 648 Query: 651 LHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691 H SLL A DA+ +L +DP+LTS RGQ++R+L L+ + Sbjct: 649 RHRSLLLAAADDARLLLGRDPNLTSERGQAVRLLEALFDWK 689 >gi|315499871|ref|YP_004088674.1| dead/deah box helicase domain protein [Asticcacaulis excentricus CB 48] gi|315417883|gb|ADU14523.1| DEAD/DEAH box helicase domain protein [Asticcacaulis excentricus CB 48] Length = 688 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 282/694 (40%), Positives = 396/694 (57%), Gaps = 17/694 (2%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP L P + L+ +GVG K + L + + DLLF PS I +RP Sbjct: 1 MRPEILFPYYTSLTGLKGVGPKIAPHLIRHVG------PYVRDLLFTLPSQLI---FRP- 50 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFY--RKTEMLKNVF 117 +S I+E R+ + S+Q + P +I + D +G++ L +F+ R E V Sbjct: 51 VSRIAEARVGQVQTLCVTIGSYQKSAGKGPQRITVFDDSGQMQLTYFHAIRGFEQQHPV- 109 Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G ++GK++ + M HP Y+ + PL E VY + +S L ++ + Sbjct: 110 --GETRWISGKVESFGASLQMNHPDYVVPLDKQDTIPLFETVYPATSAVSPRLMRRFVEA 167 Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237 AL R+P LPEW++ + L + ++A H P D + AR+RLAYDE LA Q Sbjct: 168 ALHRVPDLPEWLDNETLGRLKISGFSDALRAAHAPVSEADLLPDATARKRLAYDEALAHQ 227 Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 +A+ RKQ ++ I A K L +PF+ T +Q A+ DI D+ RM R+ Sbjct: 228 LAMK-ARKQHRQATPALIIDRHVWADKALSTLPFALTGAQTRALSDIRGDLRSGERMNRL 286 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 +QGDVGSGKTLV L+AM EAG Q+V+MAP ILA+QHYE + I ++TG Sbjct: 287 IQGDVGSGKTLVVLMAMIDVAEAGHQSVMMAPTEILARQHYEKSLPILSDMGISAVLMTG 346 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 R +A G+ +I GTHA+FQ+ + + L ++DEQHRFGV QR +L K Sbjct: 347 RDKGKEREAKRAAVASGETTMIFGTHAVFQEGVAFKSLQFCVIDEQHRFGVGQRQRLFLK 406 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 + H L M+ATPIPRTL LT G+ D+S + EKPAGR+PI T +IP R+ EV +RLK Sbjct: 407 GESVHYLSMSATPIPRTLALTQYGESDLSVLDEKPAGRQPIHTAVIPRARLSEVFDRLKS 466 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537 ++ G +AYWICP +EE ES+ +V R SL E + ++HGR+ +KE V+ F Sbjct: 467 AIAAGSQAYWICPLVEESAESDLIAVEARHESLQEALGREVGLVHGRLPSAEKEDVVARF 526 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 +G LL ATTV+EVGIDV +ASIIIIE AE FGLAQLHQLRGRVGRG S+CILLY Sbjct: 527 ASGELPLLCATTVVEVGIDVPNASIIIIEQAERFGLAQLHQLRGRVGRGSAKSACILLYD 586 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PL + + RL +L+ TEDGF IAE D K R EG++LG +QSG P + P H L+ Sbjct: 587 MPLGQAAKARLELLRTTEDGFEIAEMDWKLRGEGDVLGARQSGFPAYRFVDPVAHADLIA 646 Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691 A ++A++IL + R Q++ +L +L+ + Sbjct: 647 TASREAQYILQHEAQFPPQRRQALEVLRHLFDWR 680 >gi|260753801|ref|YP_003226694.1| helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258553164|gb|ACV76110.1| helicase domain protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 692 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 288/710 (40%), Positives = 425/710 (59%), Gaps = 28/710 (3%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP LNPLFA + +GVG L K TR DLLFY PS + R Sbjct: 1 MRPDILNPLFAETESLKGVGSALLKPLKK------RQLTRLKDLLFYLPSGQMRRVKSDH 54 Query: 61 IS--EISEERIVTITGYISQHSSFQLQKRRPYKILLNDG-TGEITLLFFYRKTEMLKNVF 117 I+ ++ I+T+T +H S R P++IL D G+I LL+F + + + Sbjct: 55 INAKDVGATVILTLTAKEYRHPS----GRGPFRILAEDPFGGQIQLLWFGNHSSWARKLM 110 Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G V+GK+ + ++ +VHP I S++ + PL E +Y L GL+ ++I + Sbjct: 111 PIGETRLVSGKLDIYQEQLQIVHPSEIVPLSEENSIPLEETLYPLSDGLTHRRIGQLIRQ 170 Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237 A + P LPEWIE LL+K +PS EA IH + A+ R+ YDE+ A Q Sbjct: 171 AWEKSPDLPEWIEPSLLKKHQWPSWREAVERIHQHPDDR------AAKLRIGYDEIFANQ 224 Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 +AL L+R +++ G P+ +G + + N+PF PT +Q ++ +I DM Q + MLR+ Sbjct: 225 LALKLIRAANRRKRGFPLKGDGHLRDAL--NLPFQPTGAQRRSLAEIEGDMQQASPMLRL 282 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 LQGDVGSGKT VAL ++ A EAG Q ++AP ILA+QH+E + + + + ++TG Sbjct: 283 LQGDVGSGKTWVALHSLLIAAEAGYQGALLAPTEILARQHFETLSQQLAGLPVNIALLTG 342 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 R L +A G H+++GTHA+FQ+ + Y L L I+DEQHRFGV QR+ L +K Sbjct: 343 RDKGKLRESTLMGLADGSIHLLVGTHAIFQEKVSYKNLGLAIIDEQHRFGVAQRMMLAEK 402 Query: 418 AT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 A PH+L+MTATPIPR+L+LT+ G++D+S++ E P GR+P++T +I +I E+I L Sbjct: 403 AIHTPHLLVMTATPIPRSLMLTAHGEMDVSRLDEMPPGRQPVETRVISSRKIPEIIASLG 462 Query: 477 VVLSEGKKAYWICPQIEEKK-ESNFR-----SVVERFNSLHEHFTSSIAIIHGRMSDIDK 530 ++EG ++YW+CP + E E +F + +RF+ L +HF + ++HG+M +K Sbjct: 463 RHIAEGGQSYWVCPAVGEADIEEDFSPNAIAAAEQRFSLLQQHFGKKVGLVHGKMKPAEK 522 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 + VMD F G +L+ATTVIEVG++V +A+++II+ AE FGLAQLHQLRGRVGRG S Sbjct: 523 DKVMDDFAAGKIAVLVATTVIEVGVNVPNATLMIIDQAERFGLAQLHQLRGRVGRGGGRS 582 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 C+LL L+ + RL++++ DGF +AEEDL+ R GEILG KQSG F IA PE Sbjct: 583 ICLLLRSEELTSVARERLALIRECNDGFRLAEEDLRLRGSGEILGTKQSGESHFQIASPE 642 Query: 651 LHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 LL IA DA+ ++ +D L+ RGQ+ RI LYL++ + F+R+G Sbjct: 643 DLSELLPIANDDARLLVDRDGGLSGERGQAARIALYLFERDAGVSFLRSG 692 >gi|241762220|ref|ZP_04760302.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373267|gb|EER62886.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 692 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 289/710 (40%), Positives = 425/710 (59%), Gaps = 28/710 (3%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP LNPLFA + +GVG L K TR DLLFY PS + R + Sbjct: 1 MRPDILNPLFAETESLKGVGSALLKPLKK------RQLTRLKDLLFYLPSGQMRRVKSDQ 54 Query: 61 IS--EISEERIVTITGYISQHSSFQLQKRRPYKILLNDG-TGEITLLFFYRKTEMLKNVF 117 ++ ++ I+T+T +H S R P++IL D G+I LL+F + + + Sbjct: 55 VNAKDVGATVILTLTAKEYRHPS----GRGPFRILAEDPFGGQIQLLWFGNHSSWARKLM 110 Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G V+GK+ + ++ +VHP I S++ + PL E +Y L GL+ ++I + Sbjct: 111 PIGETRLVSGKLDIYQEQLQIVHPSEIVPLSEENSIPLEETLYPLSDGLTHRRIGQLIRQ 170 Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237 A + P LPEWIE LL+K +PS EA IH + A+ R+ YDE+ A Q Sbjct: 171 AWEKSPDLPEWIEPSLLKKHQWPSWREAVERIHQHPDDR------AAKLRIGYDEIFANQ 224 Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 +AL L+R +++ G P+ +G + + N+PF PT +Q ++ +I DM Q + MLR+ Sbjct: 225 LALKLIRAANRRKRGFPLKGDGHLRDAL--NLPFQPTGAQRRSLAEIEGDMQQASPMLRL 282 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 LQGDVGSGKT VAL ++ A EAG Q ++AP ILA+QH+E + + + + ++TG Sbjct: 283 LQGDVGSGKTWVALHSLLIAAEAGYQGALLAPTEILARQHFETLSQQLAGLPVNIALLTG 342 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 R L +A G H+++GTHA+FQ+ + Y L L I+DEQHRFGV QR+ L +K Sbjct: 343 RDKGKLRESTLMGLADGSIHLLVGTHAIFQEKVSYKNLGLAIIDEQHRFGVAQRMMLAEK 402 Query: 418 AT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 A PH+L+MTATPIPR+L+LT+ G++D+S++ E P GR+P++T +I +I E+I L Sbjct: 403 AIHTPHLLVMTATPIPRSLMLTAHGEMDVSRLDEMPPGRQPVETRVISSRKIPEIIASLG 462 Query: 477 VVLSEGKKAYWICP-----QIEEKKESNFRSVVE-RFNSLHEHFTSSIAIIHGRMSDIDK 530 ++EG ++YW+CP IEE N + E RF+ L +HF + ++HG+M +K Sbjct: 463 RHIAEGGQSYWVCPAVGEADIEEAFSPNAIAAAEQRFSLLQQHFGKKVGLVHGKMKPAEK 522 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 + VMD F G +L+ATTVIEVG++V +A+++II+ AE FGLAQLHQLRGRVGRG S Sbjct: 523 DKVMDDFAAGKIAILVATTVIEVGVNVPNATLMIIDQAERFGLAQLHQLRGRVGRGGGRS 582 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 C+LL L+ + RL++++ DGF +AEEDL+ R GEILG KQSG F IA PE Sbjct: 583 ICLLLRSEELTSVARERLALIRECNDGFRLAEEDLRLRGSGEILGTKQSGESHFQIASPE 642 Query: 651 LHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 LL IA DA+ ++ +D L+ RGQ+ RI LYL++ + F+R+G Sbjct: 643 DLSELLPIANDDARLLVDRDGGLSGERGQAARIALYLFERDAGVSFLRSG 692 >gi|56552540|ref|YP_163379.1| DEAD/DEAH box helicase domain-containing protein [Zymomonas mobilis subsp. mobilis ZM4] gi|56544114|gb|AAV90268.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 692 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 287/710 (40%), Positives = 425/710 (59%), Gaps = 28/710 (3%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP LNPLFA + +GVG L K TR DLLFY PS + R Sbjct: 1 MRPDILNPLFAETESLKGVGSALLKPLKK------RQLTRLKDLLFYLPSGQMRRVKSDH 54 Query: 61 IS--EISEERIVTITGYISQHSSFQLQKRRPYKILLNDG-TGEITLLFFYRKTEMLKNVF 117 I+ ++ I+T+T +H S R P++IL D G+I LL+F + + + Sbjct: 55 INAKDVGATVILTLTAKEYRHPS----GRGPFRILAEDPFGGQIQLLWFGNHSSWARKLM 110 Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G V+GK+ + ++ +VHP I S++ + PL E +Y L GL+ +++ + Sbjct: 111 PIGETRLVSGKLDIYQEQLQIVHPSEIVPLSEENSIPLEETLYPLSDGLTHRRIGQLVRQ 170 Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237 A + P LPEWIE LL+K +PS EA IH + A+ R+ YDE+ A Q Sbjct: 171 AWEKSPDLPEWIEPSLLKKHQWPSWREAVERIHQHPDDR------AAKLRIGYDEIFANQ 224 Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 +AL L+R +++ G P+ +G + + N+PF PT +Q ++ +I DM Q + MLR+ Sbjct: 225 LALKLIRAANRRKRGFPLKGDGHLRDAL--NLPFQPTGAQRRSLAEIEGDMQQASPMLRL 282 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 LQGDVGSGKT VAL ++ A EAG Q ++AP ILA+QH+E + + + + ++TG Sbjct: 283 LQGDVGSGKTWVALHSLLIAAEAGYQGALLAPTEILARQHFETLSQQLAGLPVNIALLTG 342 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 R L +A G H+++GTHA+FQ+ + Y L L I+DEQHRFGV QR+ L +K Sbjct: 343 RDKGKLRESTLMGLADGSIHLLVGTHAIFQEKVNYKNLGLAIIDEQHRFGVAQRMMLAEK 402 Query: 418 AT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 A PH+L+MTATPIPR+L+LT+ G++D+S++ E P GR+P++T +I +I E+I L Sbjct: 403 AIHTPHLLVMTATPIPRSLMLTAHGEMDVSRLDEMPPGRQPVETRVISSRKIPEIIASLG 462 Query: 477 VVLSEGKKAYWICPQIEEKK-ESNFR-----SVVERFNSLHEHFTSSIAIIHGRMSDIDK 530 ++EG ++YW+CP + E E +F + +RF+ L +HF + ++HG+M +K Sbjct: 463 RHIAEGGQSYWVCPAVGEADIEEDFSPNAIAAAEQRFSLLQQHFGKKVGLVHGKMKPAEK 522 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 + VMD F G +L+ATTVIEVG++V +A+++II+ AE FGLAQLHQLRGRVGRG S Sbjct: 523 DKVMDDFAAGKIAVLVATTVIEVGVNVPNATLMIIDQAERFGLAQLHQLRGRVGRGGGRS 582 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 C+LL L+ + RL++++ DGF +AEEDL+ R GEILG KQSG F IA PE Sbjct: 583 ICLLLRSEELTSVARERLALIRECNDGFRLAEEDLRLRGSGEILGTKQSGESHFQIASPE 642 Query: 651 LHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 LL IA DA+ ++ +D L+ RGQ+ RI LYL++ + F+R+G Sbjct: 643 DLSELLPIANDDARLLVDRDGGLSGERGQAARIALYLFERDAGVSFLRSG 692 >gi|57238772|ref|YP_179908.1| ATP-dependent DNA helicase RecG [Ehrlichia ruminantium str. Welgevonden] gi|58578695|ref|YP_196907.1| ATP-dependent DNA helicase RecG [Ehrlichia ruminantium str. Welgevonden] gi|58616758|ref|YP_195957.1| ATP-dependent DNA helicase RecG [Ehrlichia ruminantium str. Gardel] gi|57160851|emb|CAH57751.1| ATP-dependent DNA helicase RecG [Ehrlichia ruminantium str. Welgevonden] gi|58416370|emb|CAI27483.1| ATP-dependent DNA helicase RecG [Ehrlichia ruminantium str. Gardel] gi|58417321|emb|CAI26525.1| ATP-dependent DNA helicase RecG [Ehrlichia ruminantium str. Welgevonden] Length = 677 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 286/688 (41%), Positives = 405/688 (58%), Gaps = 23/688 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 LF+ + G+ L K+ CG R IDLL + P S+IDR R ++SE S + Sbjct: 6 LFSSIYMLPGISSVIGGLLKKL--CGG---DRIIDLLLHIPQSYIDR--RTQLSEDSVGK 58 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 IVT G + H + + YK++L GEI+L+FF + LK++ G ++G Sbjct: 59 IVTFVGIVKCHGFVGGRNKSQYKVILETNIGEISLIFFNYSLKYLKSILNVGSAYVISGT 118 Query: 129 IKKLKNRIIMVHPHYIFHN---SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 + + + ++HP YI + QD++ +IE VY L GL+ K + ++ LP Sbjct: 119 LIRFCGCLQIMHPDYIVRDIKKFQDIS--IIEPVYPLVKGLTSRKISKFVKLGINLLPDF 176 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 PEWI+ +LL + S E+ IH P E S R RL YDEL + QIA+ ++R+ Sbjct: 177 PEWIDDELLVSNQWYSFKESLIKIHYP---DTLETLSLYRTRLVYDELFSHQIAMKVIRQ 233 Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 KE GI I + +L +PF T QE I +I K RM+++L GDVGSG Sbjct: 234 SSCKE-GISIVSKQIYYNHVLNKLPFKLTAGQEMVISEITHSQKSKQRMVKLLIGDVGSG 292 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VAL A+ VE GGQA +M P ILA+QHY +I+ + +I VE++T + Sbjct: 293 KTVVALFAILNVVENGGQAALMVPTEILAEQHYRWIQSILSDLKISVELLTSKVKGKKSI 352 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 K ++ G+ ++IGTHALFQDS+ +Y L L+++DEQHRFGV QR+KL +K VL Sbjct: 353 KKKLQL--GECQVVIGTHALFQDSVNFYNLNLIVIDEQHRFGVLQRMKLIKKGNIADVLF 410 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL GD+D ++ +KP R I+T ++ I R+ EV+ +L + L EG KA Sbjct: 411 MTATPIPRTLEQVVYGDMDCLRLKDKPHNRLSIQTSLVNIERLSEVVSKLHIALEEGNKA 470 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545 YWICP IEE + N + +RF +L + F + +IH R+S I+K+ +M+SF NG KLL Sbjct: 471 YWICPYIEESELLNIAAAEKRFFALKDIFNEKVGLIHSRLSKIEKDEIMNSFYNGDIKLL 530 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 IATTVIEVG+DV DA+IIIIENAE FGL+QLHQLRGRVGR + S CILL+ LSK +Y Sbjct: 531 IATTVIEVGVDVPDATIIIIENAEQFGLSQLHQLRGRVGRSNKPSFCILLHSKVLSKIAY 590 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665 +L +L+ +DGF IAE+DL R G+ILGI+QSG+ F A L+ +A K A Sbjct: 591 KKLCILRQFQDGFYIAEQDLLLRGSGDILGIRQSGLSNFKFADIYRDYELISVANKYADK 650 Query: 666 ILTQDPDLTSVRGQSIRILLYLYQYNEA 693 I + + +R LL ++ +N + Sbjct: 651 IYCEGE-----LSEHLRQLLTIFGHNSS 673 >gi|296116128|ref|ZP_06834746.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii ATCC 23769] gi|295977234|gb|EFG83994.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii ATCC 23769] Length = 694 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 267/709 (37%), Positives = 423/709 (59%), Gaps = 29/709 (4%) Query: 5 FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64 L PLFA + T G+G +++ A R IDLLF+ P +DR YRP+++ Sbjct: 2 LLAPLFASVGTLPGIGPSVERLIAR-----AARGDRVIDLLFHLPDGLVDRRYRPQLAVA 56 Query: 65 SEERIVT----ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF--YRKTEMLKNVFF 118 R+ T + I+ +S + R+P++I++ DGTG+ L+FF Y+ + ++ Sbjct: 57 EAGRVCTFHARVVRIIAPENS---RGRKPWRIVVGDGTGQAELVFFSPYQAQRLRVDM-- 111 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 +I V+G +++ +R+ M HP Y+ Q+ PL++ V+ L GL + + A Sbjct: 112 ---QICVSGMLERFGDRLSMPHPDYLVMGEQENTIPLLDPVWPLTGGLFPRQLRTALQGA 168 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF-------EWTSPARERLAYD 231 +R P LPEW++ ++++K+ +P+ +A I+H P D + AR RL+YD Sbjct: 169 FARFPDLPEWLDPEMVRKRKWPTFEQALRIMHRPSDFPDLMEGERYAAASERARARLSYD 228 Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 ELLA QIA+ R + G I G + L PT +Q +++I +D+ Sbjct: 229 ELLAMQIAMARARIDNRDRPGRSIIGTGALRTVALSRFGHEPTTAQIRVLEEIGRDLRAP 288 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351 +RM R+LQGDVG+GKTLVAL++M AVEAG QA +MAP ILA+QH +K + + Sbjct: 289 HRMTRLLQGDVGAGKTLVALLSMLCAVEAGHQAAMMAPTEILARQHLATFQKLSP---VP 345 Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411 V ++G++ R++ALE I G A ++IGTHALFQD +++ L LV++DEQHRFGV QR Sbjct: 346 VAFLSGSVKGRARKQALEAIRTGAAPLVIGTHALFQDKVEFADLALVVIDEQHRFGVAQR 405 Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471 + L +K VL+MTATPIPRTL+LT GD+ +S++ KPAGRKPI+T + ++ + E+ Sbjct: 406 MMLGEKGDRTDVLVMTATPIPRTLLLTQWGDMQVSRLDVKPAGRKPIRTSLHALSAMPEL 465 Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531 + ++ L+ G + +W+CP + E + + + R L E+F + + HG+ +E Sbjct: 466 VAAVRRALARGAQVFWVCPLVSESEALDIAAAEARHAMLKEYFGDLVGLAHGQQDIAVRE 525 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 + +F G ++L+ATTVIEVG+D+ A++++IE+AE FGLAQLHQLRGRVGRG+ S Sbjct: 526 EAISAFAEGRTRILVATTVIEVGVDIPSATVMMIEHAERFGLAQLHQLRGRVGRGQADSF 585 Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 C+LL+ L + + RL++L++TEDGF+IA+ED + R G++ G +QSG+P F +A Sbjct: 586 CLLLHDGQLGQTARRRLALLRDTEDGFVIADEDFRIRGGGDLAGHRQSGLPDFRMAAGVH 645 Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 + LL A +DA+ ++ R +I ILL L+ +A + ++AG Sbjct: 646 VEQLLRAAAQDAQRVVDGTAPAVHRRDAAIAILLELFSRTDAQRIMKAG 694 >gi|88658514|ref|YP_506893.1| ATP-dependent DNA helicase RecG [Ehrlichia chaffeensis str. Arkansas] gi|88599971|gb|ABD45440.1| ATP-dependent DNA helicase RecG [Ehrlichia chaffeensis str. Arkansas] Length = 679 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 283/686 (41%), Positives = 414/686 (60%), Gaps = 21/686 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 +F+ + GV L K+ CG + IDLLF+ P S++DR R +SE S + Sbjct: 6 IFSSMYMLPGVNNVVGSLLKKL--CGG---DKIIDLLFHIPQSYVDR--RTALSEDSVGK 58 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 IVT G + H +++ YKI+L+ GE++L+FF + L++V G V+G Sbjct: 59 IVTFIGTVKCHGFIGRKRKSQYKIVLDTCIGEVSLIFFNYSLKYLRSVLKVGSTCVVSGT 118 Query: 129 IKKLKNRIIMVHPHYIFHN---SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 + + + + HP YI + QD++ +IE +Y L GL+ K++ ++ LP Sbjct: 119 LIRFLGCLQITHPDYIVTDIKKFQDIS--IIEPIYPLIRGLTSKRISKLVKLSVRLLPDF 176 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 PEWI++ LL+ + S E+ IH+P E R RLAYDELL+ QI++ ++RK Sbjct: 177 PEWIDEKLLRDNRWNSWKESLIKIHHP---DTLEAVHLHRARLAYDELLSHQISVKMVRK 233 Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 F + G+ I + IL +PF T+ Q+ I I + + +NRM+++L GDVGSG Sbjct: 234 -FDYQQGVSIVSKQLYYNDILNKLPFKLTEGQKEVISQITKSQASENRMVKLLIGDVGSG 292 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VAL A+ +E GGQ MAP ILA+QHY +I+ + + VE++T + + Sbjct: 293 KTVVALFAILNVIENGGQVAFMAPTEILAEQHYRWIRAILSDISVDVELLTSKVRKKQNI 352 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 K +++ G+ +++IGTHALFQD + + L L+I+DEQ RFGV QR++L K+ VL Sbjct: 353 K--KKLQLGECNVVIGTHALFQDGVDFNNLNLIIIDEQQRFGVLQRMRLINKSNMADVLF 410 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL GDID ++ +KP R PI+T I+ I R+ EVI +L++ L EG KA Sbjct: 411 MTATPIPRTLEQVVYGDIDCLRLKDKPHNRLPIQTSIVNIERLFEVIAKLQLALQEGNKA 470 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545 YWICP IE+ + + + +RF +L E F + +IH R+ I+K+ VM SF NG KLL Sbjct: 471 YWICPYIEDSELLDIAAAEKRFFTLQEVFGKDVGLIHSRLPKIEKDEVMMSFYNGNIKLL 530 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 +ATTVIEVG+D+ DA+IIIIENAE FGL+QLHQLRGRVGR ++ S CILL+ LSK +Y Sbjct: 531 VATTVIEVGVDIPDATIIIIENAEQFGLSQLHQLRGRVGRSDKSSFCILLHGNMLSKIAY 590 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665 +L +L+ +DGF IAE+DL R G++LGIKQSG+ F A L+ IA + A Sbjct: 591 KKLCILRKFQDGFYIAEQDLLLRGSGDVLGIKQSGLSNFKFADIYKDQGLISIAVEQAGA 650 Query: 666 ILTQDPDLTSVRGQSIRILLYLYQYN 691 IL D + T + G LL+++ Y+ Sbjct: 651 IL--DANKTEL-GDHFNQLLHMFGYD 673 >gi|258542200|ref|YP_003187633.1| DNA helicase RecG [Acetobacter pasteurianus IFO 3283-01] gi|256633278|dbj|BAH99253.1| DNA helicase RecG [Acetobacter pasteurianus IFO 3283-01] gi|256636337|dbj|BAI02306.1| DNA helicase RecG [Acetobacter pasteurianus IFO 3283-03] gi|256639390|dbj|BAI05352.1| DNA helicase RecG [Acetobacter pasteurianus IFO 3283-07] gi|256642446|dbj|BAI08401.1| DNA helicase RecG [Acetobacter pasteurianus IFO 3283-22] gi|256645501|dbj|BAI11449.1| DNA helicase RecG [Acetobacter pasteurianus IFO 3283-26] gi|256648554|dbj|BAI14495.1| DNA helicase RecG [Acetobacter pasteurianus IFO 3283-32] gi|256651607|dbj|BAI17541.1| DNA helicase RecG [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654598|dbj|BAI20525.1| DNA helicase RecG [Acetobacter pasteurianus IFO 3283-12] Length = 715 Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust. Identities = 268/708 (37%), Positives = 416/708 (58%), Gaps = 22/708 (3%) Query: 4 SFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE 63 S L PL APL + GV + L +I A R +DLLF P S DR RP +++ Sbjct: 19 SALAPLLAPLESLPGVSTARAKLLGRI-----AGGRRVMDLLFCLPESITDRRLRPTLAQ 73 Query: 64 ISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123 + + I T+TG + S + R+P++++++D TG + + FF + L +G I Sbjct: 74 LRPDTIATVTGVVQDIRSPAPRTRQPWRVMVDDATGVLEVAFF---SPWLAKQVVKGESI 130 Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183 ++GK+++ +++ + P Y+ +Q PL++ V+ L GL + + AL LP Sbjct: 131 ALSGKVERFGDKLTITSPDYLVPANQIERIPLLDPVWPLTAGLFTGQVRMAMAAALRLLP 190 Query: 184 V-LPEWIEKDLLQKKSFPSIAEAFNIIHNPR----KAKDFEW---TSPARERLAYDELLA 235 LPEW +K L+++K++P A A N +H P A+ W + A+ RLA DELLA Sbjct: 191 PNLPEWHDKALIKQKNWPDFATALNWMHFPDTIPDSAQGDAWHGNRTRAQARLACDELLA 250 Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+A+ + ++ + G +N +G + ++ L + T Q+ +++I DM+ + M Sbjct: 251 DQLAMRIAQQASRARPGRSLNGDGHLQKQALASFGHELTYGQKHVLREIEADMATPHCMS 310 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R+LQGDVG+GKTLVAL+AM AVEAG QA +MAP ILA+QH ++ + + V + Sbjct: 311 RLLQGDVGAGKTLVALMAMLRAVEAGTQAALMAPTEILARQHAATFRRLSP---VPVAFL 367 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 + ++ R++ L+ IA G A +++GTHAL QD +++ L L ++DEQHRFGV QRL L Sbjct: 368 SSSVKGKARKQTLQDIADGTAKLVVGTHALVQDGVKFADLGLAVIDEQHRFGVDQRLALV 427 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K +L+MTATPIPRTL+LT G++ IS++ KPAGRKP++T + + ++V+ + Sbjct: 428 EKGHDADMLVMTATPIPRTLLLTRFGEMQISRLEGKPAGRKPVRTSLHSLGNFEDVLAGI 487 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 L +G + +W+CP + E + + + R +L E F I + HG+ +E V+ Sbjct: 488 GRALDKGAQIFWVCPLVSESEAMDLAAAEARHAALVERFGDKIGLTHGQQDANVREEVLQ 547 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +F G ++L+ATTVIEVG+DV A+I++IE+AE FGLAQLHQLRGRVGRG + S C++L Sbjct: 548 AFAKGETRMLVATTVIEVGVDVPSATIMVIEHAERFGLAQLHQLRGRVGRGADASFCLML 607 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 + L + RLS LK TEDGFLIA+ED + R GE G +QSG+P + +A L D L Sbjct: 608 HDEGLGLTARRRLSCLKETEDGFLIADEDFRLRGGGEATGRRQSGLPDYRMAPEMLVDML 667 Query: 656 LEIARKDAKHILTQDPDLTSVRGQ---SIRILLYLYQYNEAFQFIRAG 700 L+ A +A IL P ++ + RILL L+ +A + G Sbjct: 668 LDTAHDEATEILPDGPPTSTPEKNLPVAARILLTLFNKTDAARIFSGG 715 >gi|103487136|ref|YP_616697.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis RB2256] gi|98977213|gb|ABF53364.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis RB2256] Length = 701 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 282/704 (40%), Positives = 423/704 (60%), Gaps = 20/704 (2%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP LNPLFA L+ +GVG + + L+++ R +D+LF+ P+ I R + Sbjct: 14 MRPEILNPLFAALTDLKGVGPQLAKPLTRL------GLERLVDVLFHLPTGLISRIAVER 67 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFE 119 + + + + + + + + R P+ + D G+ + L++F R + + + +F Sbjct: 68 LDQAQPGQTIIVDLTVQDYRPGR-SPRAPFGVEAFDRAGDHVRLVYFGRTSGLARKLFPL 126 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G V+G++ + +VHP ++ + E VY L GL+ ++ AL Sbjct: 127 GETRRVSGRLDLYGDMRQIVHPDHVAEPGDEGAIAEHEPVYPLTEGLTNARLSQLAAIAL 186 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIH-NPRKAKDFEWTSPARERLAYDELLAGQI 238 R P L EWI+ LL +++P EA H NPR AR+RLAYDE+ A Q+ Sbjct: 187 DRRPDLAEWIDAPLLASRNWPDWREAVARAHANPRD-------EAARDRLAYDEIFANQV 239 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 AL+L+R+ + G I +G++ + +PF T +QE ++I DM+Q MLR+L Sbjct: 240 ALMLIRQGLRNRRGRAIVGDGRLTGAL--RLPFGLTGAQERVGREIAGDMAQDTPMLRML 297 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKTLVAL AM AVEAG QA ++AP ILA+QH+ ++ + + I+TG Sbjct: 298 QGDVGSGKTLVALRAMLTAVEAGTQAALLAPTEILARQHHATLRAMLAGLPVNLAILTGR 357 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R L +A G I+IGTHA+FQ ++ Y L LV+VDEQHRFGV QRL LTQKA Sbjct: 358 DKGRVRESTLMGLADGSIDILIGTHAIFQQAVTYRDLALVVVDEQHRFGVAQRLMLTQKA 417 Query: 419 T-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 PH+L+MTATPIPRTL+L + G++D+S+I E P GR P+ T ++ + R+DEVI L+ Sbjct: 418 ARPPHLLVMTATPIPRTLLLANHGEMDVSRIDEMPPGRTPVDTRVVSVERLDEVIASLER 477 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDS 536 L+ G +AYW+CP + E + S + R L E ++ + ++HGRM +K+ VM Sbjct: 478 HLATGAQAYWVCPLVAESEASELAAAEARAALLAERLGAARVGLVHGRMKGPEKDDVMAR 537 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F++G +L+ATTVIEVG+DV AS++++E+AEHFGLAQLHQLRGRVGRG S C+LL Sbjct: 538 FQSGAIGVLVATTVIEVGVDVPAASLMVVEHAEHFGLAQLHQLRGRVGRGAAKSVCLLLR 597 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 P LS+ + RL++++ T DGF+IAE DL+ R GE+LG+KQSG + +A PE LL Sbjct: 598 SPTLSETARERLALMRETNDGFVIAERDLELRGGGELLGLKQSGEADYRLASPEQLVRLL 657 Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 +A DA+ + +D + RG+++R+ LYL++ + A +R+G Sbjct: 658 PVAHDDARLFVERDGGMEGARGEAVRLCLYLFERDAAVPLLRSG 701 >gi|73666667|ref|YP_302683.1| DEAD/DEAH box helicase:helicase, C- terminal:TypeIII restriction enzyme, res subunit [Ehrlichia canis str. Jake] gi|72393808|gb|AAZ68085.1| DEAD/DEAH box helicase:Helicase, C- terminal:TypeIII restriction enzyme, res subunit [Ehrlichia canis str. Jake] Length = 678 Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust. Identities = 275/684 (40%), Positives = 410/684 (59%), Gaps = 18/684 (2%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 +F+ + GV K L K+ CG + IDLLF+ P ++IDR R +SE + + Sbjct: 6 IFSSIYMLPGVNKVVGNLLKKL--CGG---DKIIDLLFHIPQNYIDR--RTGLSEEAVGK 58 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 IVT G + H +++ YKI+L+ GE++L+FF+ + LK+V G + ++G Sbjct: 59 IVTFIGTVKSHGFIGGRRKAQYKIVLDTCIGEVSLVFFHYSVKYLKSVLKVGSECVISGT 118 Query: 129 IKKLKNRIIMVHPHYIFHNSQDV-NFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187 + + + + HP YI + + +IE VY L G++ K++ ++ LP PE Sbjct: 119 LIRFFECLQITHPDYIITDVGKFHDISIIEPVYPLIKGVTSKRISKLVKLSIGLLPDFPE 178 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247 WI++ LL+ + S E+ IH+P K E S + RLAYDELL+ QI++ ++RK F Sbjct: 179 WIDERLLRDNQWDSWKESLIKIHHP---KTLETVSLHKMRLAYDELLSHQISMKMVRK-F 234 Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 + G+ I + IL +PF T QE I I + + +RM+++L GDVGSGKT Sbjct: 235 DCKQGVSIISKRIYHDDILNKLPFKLTAGQEEVISQITESQALNSRMVKLLIGDVGSGKT 294 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +VAL A+ +E GQ MAP ILA+QHY +I+ + VE++T + + K Sbjct: 295 VVALFAILNVIENEGQVAFMAPTEILAEQHYRWIQGILSGIPVSVELLTSKVRKKQDIK- 353 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 ++ G+ +++GTHALFQD + + L L+I+DEQ RFGV QR+KL K+ VL MT Sbjct: 354 -RKLQLGECKVVVGTHALFQDGVDFNNLNLIIIDEQQRFGVLQRMKLINKSNLADVLFMT 412 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL GDID ++ +KP R PI T II I ++ EV+ +L+ L +G KAYW Sbjct: 413 ATPIPRTLEQVVYGDIDCLRLEDKPHNRLPIHTSIINIEKLYEVVTKLQFALRDGNKAYW 472 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 ICP IE+ + + + +RF SL E F + ++H R+S ++++ VM SF +GT KLL+A Sbjct: 473 ICPYIEDSELVDIAAAEKRFFSLKEVFGQEVGLVHSRLSKVERDDVMMSFYHGTIKLLVA 532 Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607 TTVIEVG+DV DA+IIIIENAE FGL+QLHQLRGRVGR ++ S C+LL+ +SK +Y + Sbjct: 533 TTVIEVGVDVPDATIIIIENAEQFGLSQLHQLRGRVGRSDKASFCVLLHGSMVSKVAYKK 592 Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 L +L+ ++DGF IAE+DL R G++LG+KQSG+ F A +L+ IA + A+ IL Sbjct: 593 LCILRKSQDGFYIAEQDLLLRGSGDVLGVKQSGLSNFKFADIYSDQNLISIATEQAQEIL 652 Query: 668 TQDPDLTSVRGQSIRILLYLYQYN 691 + L Q LL ++ Y+ Sbjct: 653 NANTKLNDNLAQ----LLCMFGYD 672 >gi|254419102|ref|ZP_05032826.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3] gi|196185279|gb|EDX80255.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3] Length = 699 Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust. Identities = 278/698 (39%), Positives = 411/698 (58%), Gaps = 17/698 (2%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP L PLFA +S+ +GVG + + K+ DL F PS I R RP Sbjct: 5 MRPQILFPLFAEVSSLKGVGPRVLPLVQKVAG------PLVRDLAFLSPSGVIVR--RPM 56 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 + + + V I + + P K+ +D TG + L++F + + + G Sbjct: 57 EAATAVDGEVGIFEIVIDRLFVPSRPGAPLKVRASDPTGFVHLVWFGGSPQHIDRLLPRG 116 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 V+GK+++ + +VHP I + + P E VY GL+ +K++ AL Sbjct: 117 ETRLVSGKVERFNGEVQIVHPD-IVTPDKAADIPASEPVYPATQGLTSRQLRKLVQAALP 175 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 P LPEW + L+K+++ A + +H P D +PAR+RLAYDE LA Q+AL Sbjct: 176 AAPDLPEWQDPAWLKKQNWLGWRAALDALHAPAGEPDLTPEAPARQRLAYDEFLAHQLAL 235 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 R+ + + I G + +L+ +PF+ T +Q A+ +I +D+ +M R+LQG Sbjct: 236 ARRRRAREIKPSA-IIAPGAASDHLLQALPFTLTNAQAQAVAEIRRDLVSGKQMGRLLQG 294 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT VA +A+A A +G Q+ +MAP ILA+QHYE + + ++ ++TG Sbjct: 295 DVGSGKTAVAALALADAASSGFQSALMAPTEILARQHYEKLGPLLEAAGVVSVLLTGRDT 354 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT- 419 RR+ L +A G A + IGTHALFQD++++ +L L ++DEQHRFGV +R +L K Sbjct: 355 NGQRREKLAALASGHAQVAIGTHALFQDAVRFDRLALAVIDEQHRFGVSERQRLQAKGDP 414 Query: 420 ---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 A H+L M+ATPIPRTL LT G++++S++ EKP GR P+ T ++P+ RI EV RLK Sbjct: 415 RIGAVHLLTMSATPIPRTLELTQYGELEVSRLMEKPPGRTPVTTAVVPLARIGEVAARLK 474 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 VL G +AYWICP + E + + + V+R + L + + HG+M ++E+VM Sbjct: 475 TVLDAGAQAYWICPLVAESEAIDLAAAVDRADDLRRLLGVEVGLAHGQMPGAEREAVMAD 534 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F +G LL+ATTV+EVG+DV +ASI++IE+A+ FGLAQLHQLRGRVGRG + SSCILLY Sbjct: 535 FADGRLPLLVATTVVEVGVDVPNASIMVIEHADRFGLAQLHQLRGRVGRGAKASSCILLY 594 Query: 597 ---HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 L + + RL L+ TEDGF+IAEED + R G+ LG+KQSG P + A P H Sbjct: 595 GGQDGALGETAKERLETLRRTEDGFVIAEEDFRLRGGGDPLGLKQSGFPAYRFADPIRHR 654 Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691 +L+ A DA+ IL +DPDLTS RGQ++++L L+ + Sbjct: 655 ALMLAAADDARLILGRDPDLTSERGQAVQVLEELFDWK 692 >gi|330994822|ref|ZP_08318744.1| ATP-dependent DNA helicase recG [Gluconacetobacter sp. SXCC-1] gi|329758083|gb|EGG74605.1| ATP-dependent DNA helicase recG [Gluconacetobacter sp. SXCC-1] Length = 715 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 266/703 (37%), Positives = 417/703 (59%), Gaps = 30/703 (4%) Query: 5 FLNPLFAPL----STFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 F NPL APL + +GV + L+++ A R IDLLF+ P S +DR YRP Sbjct: 12 FPNPLLAPLLAGVDSLKGVRPATARLLARV-----AGGARVIDLLFHLPESVVDRRYRPN 66 Query: 61 ISEISEERIVTITGYISQ---HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVF 117 + R+ T+ +S+ + + RRP+++L++DGTG+ L+FF + L Sbjct: 67 LRTAETGRVCTLHVTVSRVVPPAPGGGRGRRPWRVLVSDGTGDAELVFF---SPHLVRRL 123 Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G+ I V+G +++ R+ M HP Y+ ++ PL++ V+ L GL + + Sbjct: 124 EAGQDICVSGTLERFGERLNMAHPDYLVPAARMGEIPLLDPVWPLTAGLFSSQVRSAVRA 183 Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF-------EWTSPARERLAY 230 A P LPEW + +L+++ +P +A +H P + + AR RLA Sbjct: 184 AFDIFPPLPEWQDATVLRQRRWPGFEDALRTLHRPCDLPELMEGDALVAASERARARLAC 243 Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290 D+LLA Q+A+ R+ + G + +G + + L PT +Q A+ +I D++ Sbjct: 244 DDLLAQQVAMAQARRLNRLRPGRAVAGDGSLRRVALSRFGHEPTTAQVRALAEIDADLAA 303 Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350 +M R+LQGDVG+GKTLVAL AM AVEAG QA +MAP ILA+QH + +T+ + + Sbjct: 304 PRQMTRLLQGDVGAGKTLVALQAMLGAVEAGHQAALMAPTEILARQH---LATFTKLSPV 360 Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410 V ++G++ RR+AL RIA G A ++IGTHALFQ+S+ + L L ++DEQHRFGV+Q Sbjct: 361 PVAFLSGSVKGKARREALARIADGTARLVIGTHALFQESVVFQDLALAVIDEQHRFGVEQ 420 Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470 R L +K VL+MTATPIPR+L+LT GD+ +S++ KPAGRKP++T + ++ +D+ Sbjct: 421 RAMLGEKGPQTDVLVMTATPIPRSLLLTQWGDMQVSRLDVKPAGRKPVRTSLHALSAMDD 480 Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDID 529 ++ ++ L+ G + +W+CP + E + ++ + R +L HF + S+ + HG+ Sbjct: 481 LLAGMERALARGARIFWVCPLVSESETTDIAAAEARHAALAAHFGAESVGLAHGQQDIAL 540 Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589 +E + F G ++L+ATTVIEVG+D+ DA+++IIE+AE FGLAQLHQLRGRVGRG Sbjct: 541 REQAIADFAAGRTRILVATTVIEVGVDIPDATVMIIEHAERFGLAQLHQLRGRVGRGRAE 600 Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649 S C+LL+ L + + RL++L+ TEDGFLIA+ED + R G++ G +QSG+P +A P Sbjct: 601 SYCLLLHDSALGQTARRRLALLRETEDGFLIADEDFRLRGGGDVAGRRQSGLPDMRLASP 660 Query: 650 ELHDSLLEIARKDAKHILTQDPD----LTSVRGQSIRILLYLY 688 D LL +A +DA+ ++ PD R ++ +LL L+ Sbjct: 661 LHVDMLLTLAAQDARRLVDTPPDQRPPALRAREPAVSLLLELF 703 >gi|190570903|ref|YP_001975261.1| ATP-dependent DNA helicase RecG [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019420|ref|ZP_03335226.1| ATP-dependent DNA helicase RecG [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357175|emb|CAQ54590.1| ATP-dependent DNA helicase RecG [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212994842|gb|EEB55484.1| ATP-dependent DNA helicase RecG [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 673 Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust. Identities = 276/684 (40%), Positives = 399/684 (58%), Gaps = 24/684 (3%) Query: 14 STFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTIT 73 S + K +S L K+ CG R +DLLFY P S++DR +++ E T Sbjct: 9 SRLENIPKFHSAILPKL--CGG---DRVMDLLFYRPLSYVDRSKSLPDAQVGE--FTTFV 61 Query: 74 GYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133 + +H + + RPYKI++ + + ++FF + L +F G I ++GK++K Sbjct: 62 AKVYEHQRPTV-RGRPYKIIVESESQYLFIVFFNYSVKYLYKLFPVGTDIVISGKLEKFA 120 Query: 134 NRIIMVHPHYIFHN-SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKD 192 R + HP Y+ + +Q IE +Y L G++ + II L LP LPEWI++ Sbjct: 121 ERWQITHPDYMLSDINQFKEIACIEPIYQLCRGITNKSIRNIISSNLKDLPDLPEWIDET 180 Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252 L+++K + + E+ +H P + E RERLAYDEL A Q+AL L R+ K+ G Sbjct: 181 LIKQKKWLNWKESIIRLHRPSSLAEAE---VCRERLAYDELFAYQLALKLARENHVKKEG 237 Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312 + K +++L +PF T Q AI +I + + RM+ +LQGDVGSGKT+VAL Sbjct: 238 KEFIILSKYKEQVLNELPFQLTNDQIRAIDEISERQKSRYRMVSLLQGDVGSGKTVVALF 297 Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372 AM VE QA +MAP ILA+QHY +I++ T I V ++TG + R+ + +A Sbjct: 298 AMLNVVENNMQAALMAPTTILAEQHYNWIEEALSCTDIKVALLTGKTARKERKIIMNELA 357 Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432 G +I+IGTHALFQ ++ + L L ++DEQ RFGV QR +L K +L +TATPIP Sbjct: 358 SGILNIVIGTHALFQANVTFKNLGLAVIDEQQRFGVIQRNRLVGKGENTDILFVTATPIP 417 Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492 RTL GD++ S + EKP R PIKTVI+ + ++ ++I+RLK ++ G+KAYWICP I Sbjct: 418 RTLQQAMYGDVECSILREKPKSRLPIKTVIMNVKKVSDIIQRLKDAINRGEKAYWICPYI 477 Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552 EE +E N + RF L + F + IIHG+++ K+ VM SFK LL+ATTVIE Sbjct: 478 EENEELNIAAAEMRFQELQKTFFDRVGIIHGKLTQEQKDQVMFSFKRNEFSLLVATTVIE 537 Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612 VGIDV DA+I+IIENAE FGL+QLHQLRGRVGRG + S C+LLY LSK+SY++L ++ Sbjct: 538 VGIDVPDATIMIIENAEQFGLSQLHQLRGRVGRGNKPSFCVLLYD-NLSKSSYSKLKIMC 596 Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 ++DGF IAE+D+ R G+ILG KQSG +F A LL +A AK + Sbjct: 597 ESQDGFYIAEKDMMLRGSGDILGTKQSGCMEFKFADLYEDRELLNLAYNSAKGTIA---- 652 Query: 673 LTSVRGQSIRILLYLYQYNEAFQF 696 + +LL +++Y F Sbjct: 653 -------NFELLLDIFEYRSRLHF 669 >gi|120553574|ref|YP_957925.1| ATP-dependent DNA helicase RecG [Marinobacter aquaeolei VT8] gi|120323423|gb|ABM17738.1| ATP-dependent DNA helicase RecG [Marinobacter aquaeolei VT8] Length = 691 Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust. Identities = 274/687 (39%), Positives = 399/687 (58%), Gaps = 40/687 (5%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +GVG S K+ G + DLLF+ P + DR + + I Sbjct: 8 PVTQLKGVG---SALAEKLARLGIHS---IQDLLFHLPYRYEDRTRVVPMGSLRIGDIAV 61 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + + +RR ++ L D TG + + FF+ KN EG ++ G+++ Sbjct: 62 VEGEVMK-ADLVMGRRRSLQVTLRDDTGFLVMRFFHFNAAQ-KNQLAEGTRVRCFGEVRP 119 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE-----AVYSLPTGLSVDLFKKIIVEALSRLPVLP 186 + HP Y + P E VY L G+ + + +ALS L P Sbjct: 120 GRAGYEFYHPEY---QTNPPAMPPAEQATLTPVYPLTEGIQQPRVRGLCQQALSYLDRYP 176 Query: 187 --EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIAL 240 +W+ LL P I EA ++H P E PA++RL +ELLA Q++L Sbjct: 177 IKDWLPPALLADYQLPGITEAVRLVHLPPAGAPVHLLVEGKHPAQQRLVMEELLAHQLSL 236 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L +R+Q + +P+ G A++ L +PFS T +Q + DI QD+SQ MLR++QG Sbjct: 237 LQVREQIQAREALPLLPAGDRAERFLEQLPFSLTGAQRHVMADIRQDLSQPVPMLRLVQG 296 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA ++ A+EAG Q +MAP ILA+QHY+ + + + + + ++G + Sbjct: 297 DVGSGKTVVAALSALQAIEAGAQVALMAPTEILAEQHYQNFRNWLEPLGVELVWLSGKVK 356 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT- 419 R+ AL +A G+A I IGTHALFQD + + +L LVIVDEQHRFGV QRL L +K Sbjct: 357 GKARQSALNAVAEGRAQIAIGTHALFQDDVVFQRLALVIVDEQHRFGVHQRLALREKGVG 416 Query: 420 ---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 APH L+MTATPIPRTL +++ D+D S I E P GRKPI+T+++P +R D++IER++ Sbjct: 417 GTLAPHQLIMTATPIPRTLAMSAYADLDTSVIDELPPGRKPIETIVLPESRRDDIIERVR 476 Query: 477 VVLSEGKKAYWICPQIEEKK-------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529 EG++AYW+C IEE + E + +VER L SI ++HGR+ + Sbjct: 477 KACREGRQAYWVCTLIEESEALQCQAAEVTAQELVERLPDL------SIGLVHGRLKAQE 530 Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589 K +VM+ FK+G LL+ATTVIEVG+DV +AS+IIIEN E GLAQLHQLRGRVGRGE+ Sbjct: 531 KAAVMERFKDGELDLLVATTVIEVGVDVPNASLIIIENPERLGLAQLHQLRGRVGRGEQA 590 Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649 S C+L+YHPPLS N RL L++++DGF IAE+DL+ R GE+LG +Q+G+ +F +A Sbjct: 591 SFCVLMYHPPLSNNGKARLQALRDSQDGFFIAEKDLEIRGPGEVLGTRQTGLMQFRLADF 650 Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSV 676 E +E R D L ++P + S Sbjct: 651 ERDKGWIEPIR-DMAPSLMREPRVVSA 676 >gi|149376197|ref|ZP_01893962.1| ATP-dependent DNA helicase RecG [Marinobacter algicola DG893] gi|149359602|gb|EDM48061.1| ATP-dependent DNA helicase RecG [Marinobacter algicola DG893] Length = 691 Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust. Identities = 266/676 (39%), Positives = 395/676 (58%), Gaps = 33/676 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 ++T +GVG + LSK+ DLLF+ P + DR + + + + Sbjct: 9 VTTLKGVGNALADKLSKL------GIRSLQDLLFHLPHRYEDRTRIIPMGNLRIGDVGVV 62 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G + + + + +RR ++ L D +G + + FF+ KN EG ++ G+++ Sbjct: 63 EGEVMK-ADLVMGRRRSLQVTLKDRSGFLVMRFFHFNAAQ-KNQLTEGARVRCFGEVRPG 120 Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEA--------VYSLPTGLSVDLFKKIIVEALSRLPV 184 + HP Y VN P + A VY L G+ + + +AL L Sbjct: 121 RAGYEFYHPEY------QVNPPPMPAQGEATLTPVYPLTEGIQQPRVRALCQQALGYLKR 174 Query: 185 LP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQI 238 P +W+ ++LL P I EA ++H+P E PA++RL +ELLA Q+ Sbjct: 175 YPIRDWLPEELLANYQLPGITEAVELVHSPPANAPVHLLMEGRHPAQQRLVMEELLAHQL 234 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 +LL +R+Q + +P+ G + ++ L +PFS T +Q + +I QD+SQ MLR++ Sbjct: 235 SLLQVRQQVQAREALPLLPTGDLPERFLDLLPFSLTGAQRQVMTEIRQDLSQPVPMLRLV 294 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKT+VA +A + AG Q +MAP ILA+QHY+ + + + I + ++G Sbjct: 295 QGDVGSGKTVVAALAALQTIGAGAQVALMAPTEILAEQHYQNFRGWLEPLGIQLAWLSGK 354 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + R++ALE + G+A ++IGTHALFQ+ + + +L LVIVDEQHRFGV QRL L +K Sbjct: 355 IKGKARKEALEAVGSGEATVVIGTHALFQEDVAFSRLALVIVDEQHRFGVHQRLALREKG 414 Query: 419 T----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 APH L+MTATPIPRTL +++ D+D S I E P GRKPI+T+ IP +R D+V +R Sbjct: 415 VGGTMAPHQLIMTATPIPRTLAMSAYADLDTSVIDELPPGRKPIETIAIPDSRRDDVTDR 474 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533 ++ EG++AYW+C IEE + ++ L E + ++HGR+ +K +V Sbjct: 475 VRKACKEGRQAYWVCTLIEESEALQCQAAEGTAQELAERLPDLKVGLVHGRLKAAEKAAV 534 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M+ FKNG LL+ATTVIEVG+DV +AS+IIIEN E GLAQLHQLRGRVGRGEE S C+ Sbjct: 535 MEQFKNGELDLLVATTVIEVGVDVPNASLIIIENPERLGLAQLHQLRGRVGRGEEASFCV 594 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 L+YHPPLS N RL L++++DGF IAE+DL+ R GE+LG +Q+GM +F +A E Sbjct: 595 LMYHPPLSMNGKARLQALRDSQDGFKIAEKDLEIRGPGEVLGTRQTGMMQFRLADFERDK 654 Query: 654 SLLEIARKDAKHILTQ 669 +E RK A ++ Q Sbjct: 655 GWIEPIRKMAPPLMKQ 670 >gi|302383040|ref|YP_003818863.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264] gi|302193668|gb|ADL01240.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 696 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 278/698 (39%), Positives = 405/698 (58%), Gaps = 16/698 (2%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP L PLFA +S+ +GVG + + K+ D+LF P I R Sbjct: 1 MRPQILFPLFAEVSSLKGVGPRTLPLVQKLAG------PLVRDVLFLAPVGVITRRRTNA 54 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 I E V + + + P K+ +D TG + L++F + + G Sbjct: 55 ADAIEGE--VGVFDVVVDRMIAPGRPGVPLKVRASDETGFVHLIWFGGSPQHIDRQLPRG 112 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 + V+GK+++ + +VHP +I + P +E VY GL+ +K+ + AL+ Sbjct: 113 ERRLVSGKVERFNGEVQIVHPDWIVPLDKGEEIPSVEPVYPATQGLASRNVRKLALGALA 172 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 P EW + L ++ +P A + +H P D SPARERLA+DELLA Q+AL Sbjct: 173 VTPDPDEWQDAAWLARRRWPGWKAALDALHAPTGEADLSPDSPARERLAFDELLAHQLAL 232 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 R+ + P+ E + +L +PFS T +Q A+ +I +D++ +M R+LQG Sbjct: 233 ARRRRARQITPA-PVIRENAASAALLAALPFSLTGAQAQAMAEIRRDLASGEQMGRLLQG 291 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT VA +AMA A AG QA +MAP ILA+QH++ + + + ++TG Sbjct: 292 DVGSGKTAVAALAMADAAGAGFQAALMAPTEILARQHFQRLAPMLEAAGLPTILLTGRDT 351 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT- 419 A RR L +A G+A I IGTHALFQD++++ +L L I+DEQHRFGV +R +L KA Sbjct: 352 AAERRARLAALASGEARIAIGTHALFQDAVRFDRLALAIIDEQHRFGVNERARLQAKADP 411 Query: 420 ---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 H+L M+ATPIPRTL LT G++++S++TEKP GR P+ T ++P+ RI EV RLK Sbjct: 412 RIGGVHLLTMSATPIPRTLELTQYGELEVSRLTEKPPGRTPVATAVLPLARIGEVAARLK 471 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 + G +AYWICP + E + S+ + ER L I + HG+M ++E+VM Sbjct: 472 AAVETGAQAYWICPLVAESEASDLAAAEERARDLRRILNIEIGLAHGQMPGAEREAVMAD 531 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F +G +L+ATTV+EVG+DV +A+I++IE+A+ FGLAQLHQLRGRVGRG + S+CILLY Sbjct: 532 FADGRLPVLVATTVVEVGVDVPNATIMVIEHADRFGLAQLHQLRGRVGRGAKSSACILLY 591 Query: 597 ---HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 L + + RL L+ TEDGF IAEED + R G+ LG++QSG P + A P H Sbjct: 592 GGQDGALGETARERLETLRRTEDGFEIAEEDFRLRGGGDPLGLRQSGFPAYRFADPIRHR 651 Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691 SL+ A DA+ +L +DPDL S RGQ+I++L L+ + Sbjct: 652 SLMLAASDDARMVLGRDPDLASPRGQAIQVLEALFDWR 689 >gi|329113369|ref|ZP_08242150.1| ATP-dependent DNA helicase RecG [Acetobacter pomorum DM001] gi|326697194|gb|EGE48854.1| ATP-dependent DNA helicase RecG [Acetobacter pomorum DM001] Length = 665 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 255/673 (37%), Positives = 402/673 (59%), Gaps = 21/673 (3%) Query: 41 FIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE 100 IDLLF P S DR RP ++++ + I T+TG + S + R+P++++++D T Sbjct: 1 MIDLLFCLPESITDRRLRPTLAQLRPDTIATVTGVVQDIRSPAPRTRQPWRVMIDDATSV 60 Query: 101 ITLLFF--YRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 + + FF ++ +++K G I ++GK+++ +++ + P Y+ +Q PL++ Sbjct: 61 LEVAFFSPWQAKQVVK-----GESIALSGKVERFGDKLTITSPDYLVPANQIERIPLLDP 115 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPR---- 213 V+ L GL + + AL LP LPEW +K L+++K++P A A + +H P Sbjct: 116 VWPLTAGLFTGQVRMAMAAALRLLPPTLPEWHDKALIKQKNWPDFATALSWVHFPDTIPD 175 Query: 214 KAKDFEW---TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270 A+ W + A+ RLA DELLA Q+A+ + ++ + G +N +G + ++ L + Sbjct: 176 SAQGDAWHGSRTRAQARLACDELLADQLAMRIAQQASRARPGRSLNGDGTLQKQALASFG 235 Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 T Q+ +++I DM+ + M R+LQGDVG+GKTLVAL+AM AVEAG QA +MAP Sbjct: 236 HELTYGQKHVLREIETDMATPHCMSRLLQGDVGAGKTLVALMAMLRAVEAGTQAALMAPT 295 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 ILA+QH ++ + + V ++ ++ R++ L+ IA G A +++GTHAL QD + Sbjct: 296 EILARQHAATFRRLSP---VPVAFLSSSVKGKARKQTLQDIADGTAKLVVGTHALVQDGV 352 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L L ++DEQHRFGV QRL L +K +L+MTATPIPRTL+LT G++ IS++ Sbjct: 353 KFADLGLAVIDEQHRFGVDQRLALVEKGHETDMLVMTATPIPRTLLLTRFGEMQISRLEG 412 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 KPAGRKP+ T + + ++V+ + L +G + +W+CP + E + + + R +L Sbjct: 413 KPAGRKPVHTSLHSLGNFEDVLAGIGRALDKGAQIFWVCPLVSESEAMDLAAAEARHAAL 472 Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 E F I + HG+ +E V+ +F NG ++L+ATTVIEVG+DV A+I++IE+AE Sbjct: 473 VERFGDKIGLAHGQQDANVREEVLQAFSNGETRMLVATTVIEVGVDVPSATIMVIEHAER 532 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630 FGLAQLHQLRGRVGRG + S C++L+ L + RLS LK TEDGFLIA+ED + R Sbjct: 533 FGLAQLHQLRGRVGRGADASFCLMLHDEGLGLTARRRLSCLKETEDGFLIADEDFRLRGG 592 Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ---SIRILLYL 687 GE G +QSG+P + +A L D LL+ A +A IL P ++ + RILL L Sbjct: 593 GEATGRRQSGLPDYRMAPEMLVDMLLDTAHDEATEILPDGPPTSTPEKNLRVAARILLAL 652 Query: 688 YQYNEAFQFIRAG 700 + +A + G Sbjct: 653 FNKTDAARIFSGG 665 >gi|58038545|ref|YP_190509.1| ATP-dependent DNA helicase RecG [Gluconobacter oxydans 621H] gi|58000959|gb|AAW59853.1| ATP-dependent DNA helicase RecG [Gluconobacter oxydans 621H] Length = 716 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 261/707 (36%), Positives = 411/707 (58%), Gaps = 29/707 (4%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE-- 63 L PLFA L++ G+G +++ L KI A R +DLLF P +DR +++ Sbjct: 27 LAPLFASLTSLPGIGPRHATLLEKI-----AGGRRVLDLLFTLPERVVDRRILRTVADGY 81 Query: 64 -ISEERIVTITGYISQHSSFQLQKR----RPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118 ++ I+T + L+K +P I D TG++ L+FF + + Sbjct: 82 NLAPGEILT-----AHVRVLALRKAGRPGQPSIIRTEDDTGKLDLVFFQTRNMPSPTI-- 134 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 G ++ V+GK + + M P ++ ++ +FP +E V+ L GL +K + A Sbjct: 135 -GAELLVSGKTGTFQGELTMPQPDHVVSWAKRDSFPSLEPVWPLTAGLFPYTVRKAMRAA 193 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK-AKDFEWTSPAR----ERLAYDEL 233 L+ LP LPEW++ L+ ++ +PS +A ++ +P + W P R RLA DEL Sbjct: 194 LALLPDLPEWLDPALVTQRKWPSFTQALRLMQSPEIIPPEIAW-EPVRNRALSRLAADEL 252 Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 LA Q+ L R + ++ G G++ ++LR PT +Q AI +I D+S Sbjct: 253 LADQLCFGLARLKARERHGRSFPGTGELQAEMLRRFGHKPTHAQTLAIAEIAADLSASTP 312 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M+R+LQGDVG+GKT VA+ AM VE+G QA +MAP ILA+QH+E + + + Sbjct: 313 MMRLLQGDVGAGKTFVAMNAMLQTVESGAQAALMAPTEILARQHFETLSRLCPTECVY-- 370 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++G + A RRK L IA G A I++GTHALFQD + ++ L L ++DEQHRFGV+QR+ Sbjct: 371 -LSGTIKGAARRKTLAAIADGTAKIVVGTHALFQDGVTFHDLGLAVIDEQHRFGVRQRMN 429 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 L+ K A +L+MTATPIPRTL L G++ +S++ KP GR+PI+T + ++ +D V+ Sbjct: 430 LSAKGEATDILVMTATPIPRTLQLMEWGEMSVSRLDSKPPGRQPIRTTLHSMDSLDSVLA 489 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 + L +G + +W+CP IE + + ER+ SL + F + + HG+ ++ Sbjct: 490 GISRALRDGVQVFWVCPLIENSETQAAAAAEERWASLEQRFEGLVGLAHGKQDITVRQEA 549 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 +D F+ G +LL+ATTVIEVG+D+ AS+++IE AE FGLAQLHQLRGRVGRG + S C+ Sbjct: 550 LDRFRLGKTRLLVATTVIEVGVDIPAASVMVIEQAERFGLAQLHQLRGRVGRGSKQSFCL 609 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 LL+ + + RLS+L++T DGFLIA+ED + R G+I G +QSG+P F +AQ Sbjct: 610 LLHDRAATPTAVRRLSLLRDTNDGFLIADEDYRIRGGGDIAGDRQSGLPGFRLAQGARLS 669 Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 LL ++D++ + ++P L RG ++R+LL ++ N+ + + +G Sbjct: 670 LLLTAMQQDSEREIARNPHLEGPRGHALRLLLEIFDRNDPDRLLISG 716 >gi|27464917|gb|AAO16242.1| ATP-dependent DNA helicase RecG [Acetobacter aceti] Length = 716 Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust. Identities = 260/707 (36%), Positives = 411/707 (58%), Gaps = 29/707 (4%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE-- 63 L PLFA L++ G+G +++ L KI A R +DLLF P +DR +++ Sbjct: 27 LAPLFASLTSLPGIGPRHATLLEKI-----AGGRRVLDLLFTLPERVVDRRILRTVADGY 81 Query: 64 -ISEERIVTITGYISQHSSFQLQKR----RPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118 ++ I+T + L+K +P I D TG++ L+FF + + Sbjct: 82 NLAPGEILTAHVRV-----LALRKAGRPGQPSIIRTEDDTGKLDLVFFQTRNMPSPTI-- 134 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 G ++ V+GK + + M P ++ ++ +FP +E V+ L GL +K + A Sbjct: 135 -GAELLVSGKTGTFQGELTMPQPDHVVSWAKRDSFPSLEPVWPLTAGLFPYTVRKAMRAA 193 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK-AKDFEWTSPAR----ERLAYDEL 233 L+ LP LPEW++ L+ ++ +PS +A ++ +P + W P R RLA DEL Sbjct: 194 LALLPDLPEWLDPALVTQRKWPSFTQALRLMQSPEIIPPEIAW-EPVRNRALSRLAADEL 252 Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 LA Q+ L R + ++ G G++ ++LR PT +Q AI +I D+S Sbjct: 253 LADQLCFGLARLKARERHGRSFPGTGELQAEMLRRFGHKPTHAQTLAIAEIAADLSASTP 312 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M+R+LQGDVG+GKT VA+ AM VE+G QA +MAP ILA+QH+E + + + Sbjct: 313 MMRLLQGDVGAGKTFVAMNAMLQTVESGAQAALMAPTEILARQHFETLSRLCPTECVY-- 370 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++G + A RRK L IA G A I++GTHALFQD + ++ L L ++D+QHRFGV+QR+ Sbjct: 371 -LSGTIKGAARRKTLAAIADGTAKIVVGTHALFQDGVTFHDLGLAVIDQQHRFGVRQRMN 429 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 L+ K A +L+MTATPIPRTL L G++ +S++ KP GR+PI+T + ++ +D V+ Sbjct: 430 LSAKGEATDILVMTATPIPRTLQLMEWGEMSVSRLDSKPPGRQPIRTTLHSMDSLDSVLA 489 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 + L +G + +W+CP IE + + ER+ SL + F + + HG+ ++ Sbjct: 490 GISRALRDGVQVFWVCPLIENSETQAAAAAEERWASLEQRFEGLVGLAHGKQDITVRQEA 549 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 +D F+ G +LL+ATTVIEVG+D+ AS+++IE AE FGLAQLHQLRGRVGRG + S C+ Sbjct: 550 LDRFRLGKTRLLVATTVIEVGVDIPAASVMVIEQAERFGLAQLHQLRGRVGRGSKQSFCL 609 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 LL+ + + RLS+L++T DGFLIA+ED + R G+I G +QSG+P F +AQ Sbjct: 610 LLHDRAATPTAVRRLSLLRDTNDGFLIADEDYRIRGGGDIAGDRQSGLPGFRLAQGARLS 669 Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 LL ++D++ + ++P L RG ++R+LL ++ N+ + + +G Sbjct: 670 LLLTAMQQDSEREIARNPHLEGPRGHALRLLLEIFDRNDPDRLLISG 716 >gi|209542293|ref|YP_002274522.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter diazotrophicus PAl 5] gi|209529970|gb|ACI49907.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 709 Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust. Identities = 265/706 (37%), Positives = 413/706 (58%), Gaps = 20/706 (2%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 R L PL APL + GVG + L++ + R IDLLF+ P S +DR YRP + Sbjct: 17 RGDNLGPLLAPLGSLPGVGPALAKLLARAVRG-----QRVIDLLFHLPESVVDRRYRPSL 71 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + R+ T+ + + + R+P+++L++DG G L+FF V G Sbjct: 72 RDAVPGRVATMQVTVRRIDAPARGTRQPWRVLVSDGAGTAELVFFSSYQARRMRV---GS 128 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + V+G + +R+ M HP +I P +E V+ L GL + + +A Sbjct: 129 AVAVSGTLDAFGDRLQMAHPDHIVPGGDIDRIPALEPVWPLTAGLFPRHVRAALHQAFLP 188 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSP---ARERLAYDELL 234 P LPEW++ L+ ++ +P+ A +H P D W + AR+RLA DELL Sbjct: 189 FPPLPEWLDSVLVARRHWPNFETALRQLHCPEAFPDLLRGDAWQAAGERARQRLACDELL 248 Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 A Q+A+ R++ + G I G + + L ++PT++Q A+++I D++ M Sbjct: 249 AEQVAMSEARRRNRNRPGRSIVGTGTLRAEALARFGYTPTRAQHRAVREIDSDLAASYPM 308 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 +R+LQGDVG+GKTLVA++AM AA EAG QAV+MAP ILA+QH +K + V Sbjct: 309 MRLLQGDVGAGKTLVAMLAMLAAAEAGHQAVLMAPTEILARQHLATFQKLAP---VPVAF 365 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 ++G++ RR LE IA G+A +++GTHALFQD + + L L ++DEQHRFGV+QRL L Sbjct: 366 LSGSVKGRARRTVLEDIASGRAPLVVGTHALFQDKVVFDDLALAVIDEQHRFGVEQRLLL 425 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 +K +L+MTATPIPRTL+LT G++ +S++ EKPAGR P++T + + + +V++ Sbjct: 426 GEKGDRADILVMTATPIPRTLLLTQWGEMQVSRLNEKPAGRLPVRTSLHAMASLGDVLDG 485 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534 + ++ G +W+CP + E + + + RF +L E F + + HG+ +E+ + Sbjct: 486 IGRAIARGALVFWVCPLVTESEAMDLAAAEARFAALTERFGPIVGLAHGQQDIAVREAAI 545 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F G K+L+ATTVIEVG+D+ A+I++IE+AE FGLAQLHQLRGRVGRG + S C+L Sbjct: 546 ADFAAGRTKILVATTVIEVGVDIPAATIMVIEHAERFGLAQLHQLRGRVGRGRDESFCLL 605 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 L+ L + RL++L++TEDGFLIA+ED + R G++ G +QSG+P +A D Sbjct: 606 LHDDALGSTARRRLALLRDTEDGFLIADEDFRLRGGGDVTGRRQSGLPDLRLATGARLDL 665 Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 LL IA +DA+ + + + R +I LL L+ ++A + +R+G Sbjct: 666 LLTIAAQDAQRV--AEGGASESRRNAIAQLLELFDRHDAARILRSG 709 >gi|225630537|ref|YP_002727328.1| ATP-dependent DNA helicase RecG [Wolbachia sp. wRi] gi|225592518|gb|ACN95537.1| ATP-dependent DNA helicase RecG [Wolbachia sp. wRi] Length = 673 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 279/687 (40%), Positives = 393/687 (57%), Gaps = 30/687 (4%) Query: 14 STFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTIT 73 S + K +S L K+ CG R +DLLFY P S++DR +++ E +T Sbjct: 9 SRLENIPKFHSTILPKL--CGG---DRVMDLLFYRPLSYVDRSKSLPDAQVGE--FITFI 61 Query: 74 GYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133 + +H S + RPYKI++ + I ++FF + L +F G + ++GK++K Sbjct: 62 AKVYEHQSPTF-RGRPYKIVVESESQYIFIVFFNYSVKYLYKLFPIGASVIISGKLEKFA 120 Query: 134 NRIIMVHPHYIFHNSQDVN----FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + HP Y+ S D+N IE VY L G++ II L LP LPEWI Sbjct: 121 EHWQITHPDYV---SLDINQFKKIACIEPVYQLCRGITNKRIGNIISSNLKELPDLPEWI 177 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249 + L+++K + S E+ +H P + E R+RLAYDEL A Q+AL L RK K Sbjct: 178 DDTLIKQKKWLSWRESIIKLHRPSSLAEAE---VCRKRLAYDELFAYQLALKLARKNHVK 234 Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309 E G + K +++L + F T Q AI +I + K RM+ +LQGDVGSGKT+V Sbjct: 235 ERGREFIILSKYKEQVLNELSFQLTNDQTRAIDEISERQKSKYRMISLLQGDVGSGKTVV 294 Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369 AL AM VE QA +MAP ILA+QHY +I++ T I V ++TG + R+ + Sbjct: 295 ALFAMINVVENNMQAALMAPTTILAEQHYNWIEEVLSCTDIKVALLTGKTSRKERKIIMN 354 Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429 +A G +I+IGTHALFQ ++ + L L ++DEQ RFGV QR +L K +L +TAT Sbjct: 355 ELASGVLNIVIGTHALFQANVTFKNLGLAVIDEQQRFGVMQRNRLVGKGENADILFVTAT 414 Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489 PIPRTL GD++ S + EKP R PIKTV + I+R+ +VIE+LK ++ G+KAYWIC Sbjct: 415 PIPRTLQQAMYGDVECSILKEKPKSRLPIKTVTMNISRVPDVIEKLKGAINRGEKAYWIC 474 Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549 P IEE +E+N + RF L + F + IIHG+++ K+ VM SFK LL+ATT Sbjct: 475 PYIEENEETNIAAAEMRFQELQKTFLDKVGIIHGKLTQEQKDQVMFSFKRNEFSLLVATT 534 Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609 VIEVGIDV DA+I+IIENAE FGL+QLHQLRGRVGRG + S C+LLY +S ++L Sbjct: 535 VIEVGIDVPDATIMIIENAEQFGLSQLHQLRGRVGRGNKPSFCVLLYDNLSKSSS-SKLK 593 Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669 ++ ++DGF IAE D+ R G+ILG KQSG +F A LL +A +AK + Sbjct: 594 IMCESQDGFYIAERDMMLRGSGDILGTKQSGCMEFKFADLYQDKELLNLAYNNAKGAMA- 652 Query: 670 DPDLTSVRGQSIRILLYLYQYNEAFQF 696 +LL +++Y F Sbjct: 653 ----------DFELLLDIFEYRSRLHF 669 >gi|296535470|ref|ZP_06897659.1| DNA helicase RecG [Roseomonas cervicalis ATCC 49957] gi|296264191|gb|EFH10627.1| DNA helicase RecG [Roseomonas cervicalis ATCC 49957] Length = 693 Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust. Identities = 263/698 (37%), Positives = 411/698 (58%), Gaps = 25/698 (3%) Query: 8 PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDR-HYRPKISEISE 66 PLFAPL + V ++ L+ ++ G R +DLLF+ P + DR + +P+ EI+ Sbjct: 16 PLFAPLDSLP-VPEEKRKRLAALVEGG-----RVMDLLFHLPERYQDRRNAQPREGEIAT 69 Query: 67 ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEM---LKNVFFEGRKI 123 V + G + S Q P+ + + G I L++F R++ + L + EG Sbjct: 70 -LPVRVLGIAAPGSPVQ-----PWAVRCDSEDGPIDLIYFGRRSWLGAWLSRTYPEGAPR 123 Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183 V+G++K+ ++R M P ++ DV P ++ ++ L GL + + +AL+ LP Sbjct: 124 RVSGRVKRYRDRWQMDAPDFV--EPPDV-IPELQPIWPLAKGLGQRDLGRAMADALALLP 180 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 LPEW + LL ++ +P A + I P D +P R+RLAYDELLAGQ+A+ L+ Sbjct: 181 ELPEWQDATLLARRRWPGFGAALHAIQAPEAVPD---DTP-RDRLAYDELLAGQLAVGLV 236 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 R+ + G + + ++ L PT Q AI +I D++ RMLR+LQGDVG Sbjct: 237 RRTVLQRPGRALTGDSRLRAAALHAFGHQPTPGQARAIAEIDADLAAPRRMLRLLQGDVG 296 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 +GKTLVA++AM AVE G QA +MAP +LA+QH ++K + ++ G++ Sbjct: 297 AGKTLVAVMAMLRAVEGGAQAALMAPTELLARQHLRTLEKLAGAAGVPCALLAGSVKGKE 356 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 R++ L +A G +++GTHAL ++ + + L L +VDEQHRFGV QRL LT+K T V Sbjct: 357 RKRVLAGLADGAIPLVVGTHALIEEGVAFRDLGLAVVDEQHRFGVAQRLALTEKGTT-DV 415 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL+LT G++ +S++ PAGR+PI T I+ R +E++ RL+ +EG Sbjct: 416 LVMTATPIPRTLLLTQWGEMAVSRLEGLPAGRQPIVTRIVSRERREELVARLRAAFAEGH 475 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543 +AYW+ +EE ++ + + F L F + + HG +E+ + F G + Sbjct: 476 RAYWVVRAVEEGEKHDNAAAETTFADLAAIFGDKVRLAHGAQKLEVREAALHDFAAGRAQ 535 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 LL+ATTV+EVG+DV +A+I+IIE AE FGLA LHQLRGRVGRG S C+LL L+ + Sbjct: 536 LLVATTVVEVGVDVPEATIMIIEQAERFGLAALHQLRGRVGRGRAQSFCLLLPSAELNDS 595 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 RL+VL+ T+DGF+IA+ DL+ R G+ LG++Q+G +A P+ H L+ +A +DA Sbjct: 596 EQRRLAVLRETQDGFVIADADLEYRGGGDALGVRQAGRIGRRLADPQRHGGLVRMAHQDA 655 Query: 664 KHILTQDPDLTSV-RGQSIRILLYLYQYNEAFQFIRAG 700 +L +DP L++ RG++ R+LL L+ ++ + + AG Sbjct: 656 ALLLEKDPALSATPRGRAARLLLALFGHDLSLAPLAAG 693 >gi|311693200|gb|ADP96073.1| DNA helicase, ATP-dependent, RecG [marine bacterium HP15] Length = 691 Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust. Identities = 263/675 (38%), Positives = 398/675 (58%), Gaps = 33/675 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +GVG + L+K+ T DLLF+ P + DR + + + Sbjct: 8 PVTQLKGVGNALAEKLAKL------GITSLQDLLFHLPHRYEDRTRVIPMGSLRIGDVAV 61 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + + +RR ++ L D +G + + FF+ KN EG ++ G+++ Sbjct: 62 VEGEVMK-ADLIMGRRRSLQVTLRDNSGFLVMRFFHFNAAQ-KNQLSEGARVRCFGEVRP 119 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA--------VYSLPTGLSVDLFKKIIVEALSRLP 183 + HP Y +N P + A VY L G+ + + +AL L Sbjct: 120 GRAGYEFYHPEY------QINPPPMPAEGDATLTPVYPLTEGIQQPRVRSLCQQALGYLD 173 Query: 184 VLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQ 237 P +W+ +LL + P I EA ++H+P + E PA++RL +ELLA Q Sbjct: 174 RFPIRDWLPGNLLAEYQLPGITEAVQLVHSPPASAPVNLLMEGRHPAQQRLVMEELLAHQ 233 Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 ++LL +R+Q + +P+ G + ++ L ++PF+ T +Q + DI QD+SQ MLR+ Sbjct: 234 LSLLQVREQIQAREALPLLPTGDLPERFLDSLPFALTGAQRHVLADIRQDLSQPLPMLRL 293 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 +QGDVGSGKT+VA +A A+ AG Q +MAP ILA+QH++ + + + I + ++G Sbjct: 294 VQGDVGSGKTVVAALAALQAIGAGAQVALMAPTEILAEQHFQNFRAWLEPLGIRLAWLSG 353 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 + R + LE + G A ++IGTHALFQD +++++L LVIVDEQHRFGV QRL L +K Sbjct: 354 KVKGKTRTETLEAVQSGDAAVVIGTHALFQDDVRFHRLALVIVDEQHRFGVHQRLALREK 413 Query: 418 AT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 APH L+MTATPIPRTL +++ D+D S I E P GRKPI+T++IP +R ++VIE Sbjct: 414 GVGGSLAPHQLIMTATPIPRTLAMSAYADLDTSVIDELPPGRKPIETIVIPDSRREDVIE 473 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532 R++ EG++AYW+C IEE + ++ L E + ++HGR+ +K + Sbjct: 474 RVRGACREGRQAYWVCTLIEESEALQCQAAEVTAQELAERLPDLKVGLVHGRLKAQEKAA 533 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 VM+ FK G LL+ATTVIEVG+DV +AS+IIIEN E GLAQLHQLRGRVGRGE+ S C Sbjct: 534 VMEQFKVGELDLLVATTVIEVGVDVPNASLIIIENPERLGLAQLHQLRGRVGRGEQASFC 593 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +L+YHPPLS N RL L++++DGF IAE+DL+ R GE+LG +Q+GM +F +A E Sbjct: 594 VLMYHPPLSANGKARLQALRDSQDGFFIAEKDLEIRGPGEVLGTRQTGMMQFRLADFERD 653 Query: 653 DSLLEIARKDAKHIL 667 +E RK A ++ Sbjct: 654 KGWIEPVRKMAPGLM 668 >gi|99034953|ref|ZP_01314758.1| hypothetical protein Wendoof_01000414 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 673 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 280/690 (40%), Positives = 395/690 (57%), Gaps = 36/690 (5%) Query: 14 STFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTIT 73 S + K +S L K+ CG + +DLLFY P S++DR +S+ R+ T Sbjct: 9 SRLENIPKFHSAILPKL--CGG---DKVVDLLFYKPLSYVDRS-----KLLSDARVGEFT 58 Query: 74 GYIS---QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 +I+ +H S + RPYKI++ + I ++FF + L +F G + ++GK++ Sbjct: 59 TFIAKVYEHQSPTF-RGRPYKIIVESESQYIFIVFFNYSVKYLYKLFPIGANVIISGKLE 117 Query: 131 KLKNRIIMVHPHYIFHNSQDVN----FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186 K + HP Y+ S D+N IE VY L G++ II L LP LP Sbjct: 118 KFAEHWQITHPDYV---SLDINQFKEIACIEPVYQLCRGITNKRIGNIISSNLKELPDLP 174 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 EWI+ L+++K + S E+ +H P + E R+RLAYDEL A Q+AL L RK Sbjct: 175 EWIDDTLIKQKKWLSWRESIIKLHRPSSLVEAE---VCRKRLAYDELFAYQLALKLARKN 231 Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 KE G + K +++L + F T Q AI +I + K RM+ +LQGDVGSGK Sbjct: 232 HVKERGREFIILSKYKEQVLNELSFQLTNDQTRAIDEISERQKSKYRMISLLQGDVGSGK 291 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366 T+VAL AM VE QA +MAP ILA+QHY +I++ T I V ++TG + R+ Sbjct: 292 TVVALFAMINVVENNMQAALMAPTTILAEQHYNWIEEVLSCTDIKVALLTGKTSRKERKI 351 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426 + +A G +I+IGTHALFQ ++ + L L ++DEQ RFGV QR +L K +L + Sbjct: 352 IMNELASGVLNIVIGTHALFQANVTFKNLGLAVIDEQQRFGVMQRNRLVGKGENADILFV 411 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486 TATPIPRTL GD++ S + EKP R PIKTV + I+R+ +VIE+LK ++ G+KAY Sbjct: 412 TATPIPRTLQQAMYGDVECSILKEKPKSRLPIKTVTMNISRVPDVIEKLKGAINRGEKAY 471 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 WICP IEE +E+N + RF L + F + IIHG+++ K+ VM SFK LL+ Sbjct: 472 WICPYIEENEETNIAAAEMRFQELQKTFLDKVGIIHGKLTQEQKDQVMFSFKRNEFSLLV 531 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 ATTVIEVGIDV DA+I+IIENAE FGL+QLHQLRGRVGRG + S C+LLY +S + Sbjct: 532 ATTVIEVGIDVPDATIMIIENAEQFGLSQLHQLRGRVGRGNKPSFCVLLYDNLSKSSS-S 590 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666 +L ++ ++DGF IAE D+ R G+ILG KQSG +F A LL +A +AK Sbjct: 591 KLKIMCESQDGFYIAERDMMLRGSGDILGTKQSGCMEFKFADLYQDKELLNLAYNNAKGA 650 Query: 667 LTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696 + +LL +++Y F Sbjct: 651 MA-----------DFELLLDIFEYRSRLHF 669 >gi|42520662|ref|NP_966577.1| ATP-dependent DNA helicase RecG [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410402|gb|AAS14511.1| ATP-dependent DNA helicase RecG [Wolbachia endosymbiont of Drosophila melanogaster] Length = 673 Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust. Identities = 280/690 (40%), Positives = 395/690 (57%), Gaps = 36/690 (5%) Query: 14 STFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTIT 73 S + K +S L K+ CG + +DLLFY P S++DR +S+ R+ T Sbjct: 9 SRLENIPKFHSAILPKL--CG---RDKVVDLLFYKPLSYVDRS-----KLLSDARVGEFT 58 Query: 74 GYIS---QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 +I+ +H S + RPYKI++ + I ++FF + L +F G + ++GK++ Sbjct: 59 TFIAKVYEHQSPTF-RGRPYKIVVESESQYIFIVFFNYSVKYLYKLFPIGANVIISGKLE 117 Query: 131 KLKNRIIMVHPHYIFHNSQDVN----FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186 K + HP Y+ S D+N IE VY L G++ II L LP LP Sbjct: 118 KFAEHWQITHPDYV---SLDINQFKEIACIEPVYQLCRGITNKRIGNIISSNLKELPDLP 174 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 EWI+ L+++K + S E+ +H P + E R+RLAYDEL A Q+AL L RK Sbjct: 175 EWIDDTLIKQKKWLSWRESIIKLHRPSSLVEAE---VCRKRLAYDELFAYQLALKLARKN 231 Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 KE G + K +++L + F T Q AI +I + K RM+ +LQGDVGSGK Sbjct: 232 HVKERGREFIILSKYKEQVLNELSFQLTNDQTRAIDEISERQKSKYRMISLLQGDVGSGK 291 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366 T+VAL AM VE QA +MAP ILA+QHY +I++ T I V ++TG + R+ Sbjct: 292 TVVALFAMINVVENNMQAALMAPTTILAEQHYNWIEEVLSCTDIKVALLTGKTSRKERKI 351 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426 + +A G +I+IGTHALFQ ++ + L L ++DEQ RFGV QR +L K +L + Sbjct: 352 IMNELASGVLNIVIGTHALFQANVTFKNLGLAVIDEQQRFGVMQRNRLVGKGENADILFV 411 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486 TATPIPRTL GD++ S + EKP R PIKTV + I+R+ +VIE+LK ++ G+KAY Sbjct: 412 TATPIPRTLQQAMYGDVECSILKEKPKSRLPIKTVTMNISRVPDVIEKLKGAINRGEKAY 471 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 WICP IEE +E+N + RF L + F + IIHG+++ K+ VM SFK LL+ Sbjct: 472 WICPYIEENEETNIAAAEMRFQELQKTFLDKVGIIHGKLTQEQKDQVMFSFKRNEFSLLV 531 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 ATTVIEVGIDV DA+I+IIENAE FGL+QLHQLRGRVGRG + S C+LLY +S + Sbjct: 532 ATTVIEVGIDVPDATIMIIENAEQFGLSQLHQLRGRVGRGNKPSFCVLLYDNLSKSSS-S 590 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666 +L ++ ++DGF IAE D+ R G+ILG KQSG +F A LL +A +AK Sbjct: 591 KLKIMCESQDGFYIAERDMMLRGSGDILGTKQSGCMEFKFADLYQDKELLNLAYNNAKGA 650 Query: 667 LTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696 + +LL +++Y F Sbjct: 651 MA-----------DFELLLDIFEYRSRLHF 669 >gi|226373858|gb|ACO52152.1| RecG [Wolbachia endosymbiont of Armadillidium vulgare] Length = 676 Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust. Identities = 277/684 (40%), Positives = 396/684 (57%), Gaps = 24/684 (3%) Query: 14 STFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTIT 73 S + K +S L K+ CG R +DLLFY P S++DR ++I E Sbjct: 12 SKLGNIPKFHSAILPKL--CGG---DRVMDLLFYRPLSYVDRSKSLLDAQIGEFTTFMAK 66 Query: 74 GYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133 Y Q +F + RPYK+++ + + ++FF + L +F G + ++GK++K Sbjct: 67 VYEHQPPTF---RGRPYKVVVESESQYVFIVFFNYSIKYLHKLFPIGANVIISGKLEKFA 123 Query: 134 NRIIMVHPHYIFHN-SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKD 192 + HP Y+ N SQ IE +Y L G++ + II L LP LPEWI+ Sbjct: 124 EHWQITHPDYVSLNISQFEEIACIEPIYQLCRGITNKSIRNIINSNLEGLPDLPEWIDGT 183 Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252 L+++K + + E+ +H P + E RERLAYDEL A Q+AL R+ K+ G Sbjct: 184 LIKQKKWLNWKESIIRLHRPSSLAEAE---VCRERLAYDELFAYQLALKFARENHVKKEG 240 Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312 + K +++L +PF T Q AI +I + K RM+ +LQGDVGSGKT+VAL Sbjct: 241 REFVILSKYKEQVLNGLPFQLTNDQIRAIDEIAERQKSKYRMVSLLQGDVGSGKTVVALF 300 Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372 AM VE QA +MAP ILA+QHY +I++ T I V ++TG + RR + +A Sbjct: 301 AMLNVVENNMQAALMAPTTILAEQHYNWIEEALSCTDIKVALLTGKTSRKERRTIMNELA 360 Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432 G +I+IGTH LFQ ++ + L L ++DEQ RFGV QR +L K P +L +TATPIP Sbjct: 361 SGVLNIVIGTHTLFQANVTFKNLGLAVIDEQQRFGVMQRNRLVGKGENPDILFVTATPIP 420 Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492 RTL GD++ S + EKP R PIKTV + I ++ ++I++LK ++ G+KAYWICP I Sbjct: 421 RTLQQAMYGDVECSILKEKPKSRLPIKTVTMNIKKVPDIIKKLKDAINRGEKAYWICPYI 480 Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552 EE +E N + RF L + F I+IIHG+++ K+ VM SFK LL++TTVIE Sbjct: 481 EENEELNIAAAEMRFQELQKTFFDKISIIHGKLTQEQKDQVMFSFKRNEFSLLVSTTVIE 540 Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612 VGIDV DA+I+IIENAE FGL+QLHQLRGRVGRG + S C+LLY LSK+S ++L ++ Sbjct: 541 VGIDVPDATIMIIENAEQFGLSQLHQLRGRVGRGNKPSFCVLLYD-NLSKSSSSKLKIMC 599 Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 ++DGF IAE+D+ R G+ILGIKQSG +F A LL +A +AK ++ Sbjct: 600 ESQDGFYIAEKDMMLRGSGDILGIKQSGYMEFKFADLYKDRELLNLAYNNAKGVMA---- 655 Query: 673 LTSVRGQSIRILLYLYQYNEAFQF 696 +LL +++Y F Sbjct: 656 -------DFELLLDIFEYRSRLHF 672 >gi|312882900|ref|ZP_07742632.1| ATP-dependent DNA helicase RecG [Vibrio caribbenthicus ATCC BAA-2122] gi|309369419|gb|EFP96939.1| ATP-dependent DNA helicase RecG [Vibrio caribbenthicus ATCC BAA-2122] Length = 692 Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust. Identities = 272/678 (40%), Positives = 403/678 (59%), Gaps = 30/678 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG K + L+KI N + DLLF+ PS + DR I+++ Sbjct: 9 PLSSLTGVGAKVAEKLTKI----GLNSVQ--DLLFHLPSRYEDRTRVYPIAQLHTGLWAA 62 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G + + +R+ + ++DG G +TL FF T +KN F G+ + G+IK+ Sbjct: 63 IQGQVMA-TDVSFGRRKMLTVKVSDGNGTLTLRFF-NFTAAMKNNFTAGKTVHAYGEIKR 120 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA----VYSLPTGLSVDLFKKIIVEALSRLPVLPE 187 + +VHP Y FH S+ N P EA VY GL + + +AL +L + Sbjct: 121 GNYGLEIVHPDYKFHVSE--NKPAAEATLTPVYPTTEGLRQITLRNLTEQALE---LLAK 175 Query: 188 WIEKDLLQKKSF---PSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIAL 240 K+LL + ++ EA + IH P + D E PA+ RL +ELLA +++ Sbjct: 176 SAVKELLPAGLYDYQTTLGEALHTIHRPPPSIDLEQFDQGQHPAQLRLIIEELLAQNLSM 235 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L +R Q ++++ + V + K+L +PFSPTK+Q+ ++++ QD+ + + M+R++QG Sbjct: 236 LAVRSQGQQDLAQALPVSQNLKPKLLAQLPFSPTKAQDRVVREVEQDLQKNHPMMRLVQG 295 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKTLVA +A A+E G Q +MAP +LA+QH ++ + I V + G + Sbjct: 296 DVGSGKTLVAALAGLGALEKGHQVALMAPTELLAEQHALNFTQWLEPLGIQVGWLAGKLK 355 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 ++ ALE+IA+G+ +++GTHALFQD + + L LVI+DEQHRFGV QRL+L +K Sbjct: 356 GKAKQTALEKIANGEMQMVVGTHALFQDQVHFSHLALVIIDEQHRFGVHQRLELREKGQH 415 Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + D++I R++ Sbjct: 416 DNLYPHQLIMTATPIPRTLAMTAYADLETSIIDELPPGRTPIQTVAIPDTKRDDIIARVQ 475 Query: 477 -VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 + EGK+AYW+C I+E + ++ + L I ++HGRM +K++VM Sbjct: 476 NACMHEGKQAYWVCTLIDESEVLEAQAAADTSEDLQRKLPELKIGLVHGRMKPAEKQAVM 535 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 FK+ LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG+ S C+L Sbjct: 536 QDFKDNKLHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGKVASHCVL 595 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 LYH PLSK + RL+VL+++ DGF+IA+ DL+ R GE+LG KQ+G+ F IA Sbjct: 596 LYHSPLSKTAQKRLAVLRDSNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQG 655 Query: 655 LLEIARKDAKHILTQDPD 672 L+ +K A+HI PD Sbjct: 656 LIPEVQKIARHIHENYPD 673 >gi|126666523|ref|ZP_01737501.1| ATP-dependent DNA helicase RecG [Marinobacter sp. ELB17] gi|126628911|gb|EAZ99530.1| ATP-dependent DNA helicase RecG [Marinobacter sp. ELB17] Length = 691 Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust. Identities = 266/694 (38%), Positives = 413/694 (59%), Gaps = 24/694 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +GVG + L K+ G A+ DLLF+ P + DR + + + Sbjct: 8 PVTQLKGVGNALAEKLGKL---GIAS---LQDLLFHLPHRYEDRTRITAMGSLRIGDVAV 61 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + + +RR ++ L D +G ++L FF+ KN F EG ++ G+++ Sbjct: 62 VEGEVMK-TDIVMGRRRSLQVTLKDHSGFVSLRFFHFNAAQ-KNQFAEGTQVRCFGEVRA 119 Query: 132 LKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187 ++ + HP Y + + D + VY L G+ + + +A++ L P + Sbjct: 120 GRSGYELYHPEYQTNPTPMADEGSATLTPVYPLTEGIQQPRVRALCQQAVAYLKRYPIYD 179 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRK----AKDFEWTSPARERLAYDELLAGQIALLLM 243 W+ +L P+I A ++H+P A+ E PA++RL +ELLA Q++LL + Sbjct: 180 WLPPWVLVDYQLPAITAAVELVHSPPASASVAQLLEGRHPAQQRLVMEELLAHQLSLLQV 239 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 R+Q + +P+ +G ++++ L ++PF T +Q +++I QD++Q MLR++QGDVG Sbjct: 240 REQIQTRQALPLLPQGDLSERFLESLPFRLTGAQRQVLQEIRQDLTQPLPMLRLVQGDVG 299 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA +A A+ AG Q +MAP ILA+QHY+ + I + ++G + Sbjct: 300 SGKTVVAALAALQAIAAGTQVALMAPTEILAEQHYQNFCAWLAPLGIQLTWLSGKVKGKA 359 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419 R++ALE ++ G A I IGTHALFQ+ + + +L LVI+DEQHRFGV QRL L +K Sbjct: 360 RQQALEALSSGAAGIAIGTHALFQNDVAFDRLALVIIDEQHRFGVHQRLALREKGAAGEL 419 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 APH L+MTATPIPRTL +++ D+D S I E P GRKPI+T+++P R D+V+ER++ Sbjct: 420 APHQLIMTATPIPRTLAMSAYADLDTSVIDELPPGRKPIETIVVPDGRRDDVVERVRNAC 479 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538 G++AYW+C IEE + ++ L E + I ++HGR+ +K VM FK Sbjct: 480 QAGRQAYWVCTLIEESEVLQCQAAEVSATELAERLPNLRIGLVHGRLKSQEKAEVMAQFK 539 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 +G LL+ATTVIEVG+DV +AS+IIIEN E GLAQLHQLRGRVGRGE+ S C+L+YHP Sbjct: 540 SGALDLLVATTVIEVGVDVPNASLIIIENPERLGLAQLHQLRGRVGRGEQASYCVLMYHP 599 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PLS N RL L++++DGF+IAE+DL+ R GE+LG +Q+GM +F +A E +E+ Sbjct: 600 PLSLNGKARLQALRDSQDGFVIAEKDLEIRGPGEVLGTRQTGMMQFRLADFERDQHWIEV 659 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692 R+ A ++ + T+V+G R L +Y E Sbjct: 660 VREIAPRLMG---NKTAVQGLVRRWLGEKTRYGE 690 >gi|58584892|ref|YP_198465.1| RecG-like helicase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419208|gb|AAW71223.1| RecG-like helicase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 682 Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust. Identities = 273/696 (39%), Positives = 401/696 (57%), Gaps = 31/696 (4%) Query: 4 SFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE 63 +FLN S +G+ K + LSK+ CG + +DLLFY P S++DR Sbjct: 11 TFLN------SNLKGISKFHFGILSKL--CGG---NKVMDLLFYRPLSYVDRS-----KS 54 Query: 64 ISEERIVTITGYISQHSSFQ--LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + + R+ +T +I++ Q + RPYKI++ + I ++FF + L +F G Sbjct: 55 LLDARVGELTTFIAKIYEHQPPTFRGRPYKIVVESKSQYIFIVFFNYSIKYLYKLFPIGA 114 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNS-QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 + ++GK++K + HP Y+ ++ Q +E VY L G++ + II L Sbjct: 115 NVIISGKLEKFAEHWQVTHPDYVLLDTNQFEEIARVEPVYQLCRGITNKSIRNIINSNLK 174 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 LP LPEWI L+++ + S E+ +H P + E R RLAYDEL A Q+AL Sbjct: 175 ELPDLPEWIGDTLIKQNKWLSWKESIIKLHRPNSLAEAE---ICRRRLAYDELFAYQMAL 231 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L R+ ++ G + K +++L + F T Q AI +I + K RM+ +LQG Sbjct: 232 KLARENHVRKRGREFTISNKYKEQVLNELSFQLTNDQIRAIDEISERQKSKCRMVSLLQG 291 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VAL AM +E QA +MAP ILA+QHY +I++ T I + ++TG Sbjct: 292 DVGSGKTVVALFAMLNVIENNMQAALMAPTTILAEQHYNWIEEALSYTDIKIALLTGKTT 351 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 + R+ +A G IIIGTHALFQ ++ + L L ++DEQ RFGV QR L K Sbjct: 352 RKERKIITNELASGILKIIIGTHALFQANVTFKNLGLAVIDEQQRFGVIQRNCLVGKGEN 411 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 +L +TATPIPRTL GD++ S + EKP R PIKTV + I ++ EVIE+LK ++ Sbjct: 412 ADILFVTATPIPRTLQQAIYGDVECSILREKPKSRLPIKTVAMNIKKLVEVIEKLKSAIN 471 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540 G+KAYWICP I + N + RF L + F + + IIHG+++ + K+ VM SFK Sbjct: 472 RGEKAYWICPCIGGNEGLNIAAAEMRFQELQKTFFNKVGIIHGKLTQVQKDQVMFSFKRN 531 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 LL+ATTVIEVGIDV DA+I+IIENAE FGL+QLHQLRGRVGRG + S C+LLY+ + Sbjct: 532 EFPLLVATTVIEVGIDVPDATIMIIENAEQFGLSQLHQLRGRVGRGNKPSFCVLLYN-NI 590 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 SK+S+++L ++ ++DGF IAE+D+ R G+ILG+KQSG +F A LL +A Sbjct: 591 SKSSFSKLKIMCESQDGFYIAEKDMMLRGSGDILGLKQSGCMEFKFADLYKDRELLNLAY 650 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696 + K + ++ +S +LL +++Y F Sbjct: 651 NNTKSAIAEN--------KSFELLLDIFEYRSRLHF 678 >gi|212213186|ref|YP_002304122.1| ATP-dependent DNA helicase RecG [Coxiella burnetii CbuG_Q212] gi|212011596|gb|ACJ18977.1| ATP-dependent DNA helicase [Coxiella burnetii CbuG_Q212] Length = 704 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 281/694 (40%), Positives = 412/694 (59%), Gaps = 51/694 (7%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L +P++ + VG L+ N N DLLF+ PS + DR I I Sbjct: 17 LTSPITALKRVGSATRELLA------NLNIHTIQDLLFHLPSRYQDRTRVTAIGAIRHGD 70 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF---YRKTEMLKNVFFEGRKITV 125 V + G I Q ++ RR ++DGTG + L F+ Y++ LK G ++ Sbjct: 71 QVVVEGKI-QLATITYGGRRNLMCSISDGTGSLILRFYHFNYQQQRQLKM----GLRVRC 125 Query: 126 TGKIKK-LKNRIIMVHPHYIFHNSQDVNFPLI-----EAVYSLPTGLSVDLFKKIIVEAL 179 G +++ + R+ M+HP Y D + PLI +Y GLS ++ +I ++L Sbjct: 126 FGNVRRNYQGRMEMIHPEY---RIVDESTPLIPEDRLTPIYPTTKGLSQTKWRHLINQSL 182 Query: 180 SRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS----PARERL 228 + L +LPE I L P++ EA +H+P + P+++RL Sbjct: 183 NYLKDPNFVEELLPEEIRTPL----RLPTLTEALFYVHSPPHNAPVDLLQASKHPSQQRL 238 Query: 229 AYDELLAGQIAL----LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284 A++EL+A Q+ L LL+R Q PI ++ +K+ R + F T +Q+ I +I Sbjct: 239 AFEELVAQQLGLQQWRLLIRTQ-----PAPILIKNNWQEKLKRALTFELTSAQKRVIGEI 293 Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344 QD+S+ MLR+LQGDVGSGKT+VA +A+ AVE G Q+ IMAP +LA+QHY+ +++ Sbjct: 294 NQDLSKPKPMLRLLQGDVGSGKTIVAAMAILKAVENGYQSAIMAPTELLAEQHYQVFQRW 353 Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404 I V + G++ + R K L+ IA GQ +IIGTHALFQ ++ + +L +++DEQH Sbjct: 354 FSPLGIRVGWLAGSLTPSAREKTLQEIASGQLSVIIGTHALFQAAVTFQQLAFIVIDEQH 413 Query: 405 RFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461 RFGV QRL L +KAT PH L+MTATPIPRTL +T+ D+D S I E+P GRKPI TV Sbjct: 414 RFGVHQRLALKEKATPNYHPHQLIMTATPIPRTLAMTAYADLDFSIIDEQPPGRKPITTV 473 Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAI 520 +I +R D+VIER+K +GK+ YW+C I + + + F L + FT+ S+ + Sbjct: 474 LISNSRRDKVIERIKKNCEQGKQVYWVCTLITDSEVLQCETAEATFKKLQQSFTNLSVGL 533 Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580 IHGR++ +K+ VM +FKNG LL+ATTVIEVG+DV +AS+++IEN+E GLAQ+HQLR Sbjct: 534 IHGRLTKEEKDVVMGAFKNGDIDLLVATTVIEVGVDVPNASLMVIENSERLGLAQIHQLR 593 Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 GRVGRGE+ S C+LLY PLSKN+ RL++L++T+DGFL+A++DL+ R GE+LG +QSG Sbjct: 594 GRVGRGEQKSYCVLLYQEPLSKNARARLTLLRDTQDGFLVAQKDLELRGPGELLGARQSG 653 Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 + +F IA H LL RK A IL + + T Sbjct: 654 LFRFRIADVIRHQHLLPAVRKAAFLILRRYSEFT 687 >gi|153208666|ref|ZP_01946918.1| ATP-dependent DNA helicase RecG [Coxiella burnetii 'MSU Goat Q177'] gi|154707134|ref|YP_001425108.1| ATP-dependent DNA helicase RecG [Coxiella burnetii Dugway 5J108-111] gi|212218140|ref|YP_002304927.1| ATP-dependent DNA helicase RecG [Coxiella burnetii CbuK_Q154] gi|120575852|gb|EAX32476.1| ATP-dependent DNA helicase RecG [Coxiella burnetii 'MSU Goat Q177'] gi|154356420|gb|ABS77882.1| ATP-dependent DNA helicase [Coxiella burnetii Dugway 5J108-111] gi|212012402|gb|ACJ19782.1| ATP-dependent DNA helicase [Coxiella burnetii CbuK_Q154] Length = 704 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 281/694 (40%), Positives = 412/694 (59%), Gaps = 51/694 (7%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L +P++ + VG L+ N N DLLF+ PS + DR I I Sbjct: 17 LTSPITALKRVGSATRELLA------NLNIHTIQDLLFHLPSRYQDRTRVTAIGAIRHGD 70 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF---YRKTEMLKNVFFEGRKITV 125 V + G I Q ++ RR ++DGTG + L F+ Y++ LK G ++ Sbjct: 71 QVVVEGKI-QLATITYGGRRNLMCSISDGTGSLILRFYHFNYQQQRQLKM----GLRVRC 125 Query: 126 TGKIKK-LKNRIIMVHPHYIFHNSQDVNFPLI-----EAVYSLPTGLSVDLFKKIIVEAL 179 G +++ + R+ M+HP Y D + PLI +Y GLS ++ +I ++L Sbjct: 126 FGNVRRNYQGRMEMIHPEY---RIVDESTPLIPEDRLTPIYPTTKGLSQTKWRHLINQSL 182 Query: 180 SRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS----PARERL 228 + L +LPE I L P++ EA +H+P + P+++RL Sbjct: 183 NYLKDPNFVEELLPEEIRTPL----RLPTLTEALFYVHSPPHNAPVDLLQASKHPSQQRL 238 Query: 229 AYDELLAGQIAL----LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284 A++EL+A Q+ L LL+R Q PI ++ +K+ R + F T +Q+ I +I Sbjct: 239 AFEELVAQQLGLQQWRLLIRTQ-----PAPILIKNNWQEKLKRALTFELTSAQKRVIGEI 293 Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344 QD+S+ MLR+LQGDVGSGKT+VA +A+ AVE G Q+ IMAP +LA+QHY+ +++ Sbjct: 294 NQDLSKPKPMLRLLQGDVGSGKTIVAAMAILKAVENGYQSAIMAPTELLAEQHYQVFQRW 353 Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404 I V + G++ + R K L+ IA GQ +IIGTHALFQ ++ + +L +++DEQH Sbjct: 354 FSPLGIRVGWLAGSLTPSAREKTLQEIASGQLSVIIGTHALFQAAVTFQQLAFIVIDEQH 413 Query: 405 RFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461 RFGV QRL L +KAT PH L+MTATPIPRTL +T+ D+D S I E+P GRKPI TV Sbjct: 414 RFGVHQRLALKEKATPNYHPHQLIMTATPIPRTLAMTAYADLDFSIIDEQPPGRKPITTV 473 Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAI 520 +I +R D+VIER+K +GK+ YW+C I + + + F L + FT+ S+ + Sbjct: 474 LISNSRRDKVIERIKKNCEQGKQVYWVCTLITDSEVLQCETAEATFKKLQQSFTNLSVGL 533 Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580 IHGR++ +K+ VM +FKNG LL+ATTVIEVG+DV +AS+++IEN+E GLAQ+HQLR Sbjct: 534 IHGRLTKEEKDVVMGAFKNGDIDLLVATTVIEVGVDVPNASLMVIENSERLGLAQIHQLR 593 Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 GRVGRGE+ S C+LLY PLSKN+ RL++L++T+DGFL+A++DL+ R GE+LG +QSG Sbjct: 594 GRVGRGEQKSYCVLLYQEPLSKNARARLTLLRDTQDGFLVAQKDLELRGPGELLGARQSG 653 Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 + +F IA H LL RK A IL + + T Sbjct: 654 LFRFRIADVIRHQHLLPAVRKAAFLILRRYSEFT 687 >gi|29653656|ref|NP_819348.1| ATP-dependent DNA helicase RecG [Coxiella burnetii RSA 493] gi|161830062|ref|YP_001596254.1| ATP-dependent DNA helicase RecG [Coxiella burnetii RSA 331] gi|29540918|gb|AAO89862.1| ATP-dependent DNA helicase [Coxiella burnetii RSA 493] gi|161761929|gb|ABX77571.1| ATP-dependent DNA helicase RecG [Coxiella burnetii RSA 331] Length = 704 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 281/694 (40%), Positives = 412/694 (59%), Gaps = 51/694 (7%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L +P++ + VG L+ N N DLLF+ PS + DR I I Sbjct: 17 LTSPITALKRVGSATRELLA------NLNIHTIQDLLFHLPSRYQDRTRVTAIGAIRHGD 70 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF---YRKTEMLKNVFFEGRKITV 125 V + G I Q ++ RR ++DGTG + L F+ Y++ LK G ++ Sbjct: 71 QVVVEGKI-QLATITYGGRRNLMCSISDGTGSLILRFYHFNYQQQRQLKM----GLRVRC 125 Query: 126 TGKIKK-LKNRIIMVHPHYIFHNSQDVNFPLI-----EAVYSLPTGLSVDLFKKIIVEAL 179 G +++ + R+ M+HP Y D + PLI +Y GLS ++ +I ++L Sbjct: 126 FGNVRRNYQGRMEMIHPEY---RIVDESTPLIPEDRLTPIYPTTKGLSQTKWRHLINQSL 182 Query: 180 SRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS----PARERL 228 + L +LPE I L P++ EA +H+P + P+++RL Sbjct: 183 NYLKDPNFVEELLPEKIRTPL----RLPTLTEALFYVHSPPHNAPVDLLQASKHPSQQRL 238 Query: 229 AYDELLAGQIAL----LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284 A++EL+A Q+ L LL+R Q PI ++ +K+ R + F T +Q+ I +I Sbjct: 239 AFEELVAQQLGLQQWRLLIRTQ-----PAPILIKNNWQEKLKRALTFELTSAQKRVIGEI 293 Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344 QD+S+ MLR+LQGDVGSGKT+VA +A+ AVE G Q+ IMAP +LA+QHY+ +++ Sbjct: 294 NQDLSKPKPMLRLLQGDVGSGKTIVAAMAILKAVENGYQSAIMAPTELLAEQHYQVFQRW 353 Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404 I V + G++ + R K L+ IA GQ +IIGTHALFQ ++ + +L +++DEQH Sbjct: 354 FSPLGIRVGWLAGSLTPSAREKTLQEIASGQLSVIIGTHALFQAAVTFQQLAFIVIDEQH 413 Query: 405 RFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461 RFGV QRL L +KAT PH L+MTATPIPRTL +T+ D+D S I E+P GRKPI TV Sbjct: 414 RFGVHQRLALKEKATPNYHPHQLIMTATPIPRTLAMTAYADLDFSIIDEQPPGRKPITTV 473 Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAI 520 +I +R D+VIER+K +GK+ YW+C I + + + F L + FT+ S+ + Sbjct: 474 LISNSRRDKVIERIKKNCEQGKQVYWVCTLITDSEVLQCETAEATFKKLQQSFTNLSVGL 533 Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580 IHGR++ +K+ VM +FKNG LL+ATTVIEVG+DV +AS+++IEN+E GLAQ+HQLR Sbjct: 534 IHGRLTKEEKDVVMGAFKNGDIDLLVATTVIEVGVDVPNASLMVIENSERLGLAQIHQLR 593 Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 GRVGRGE+ S C+LLY PLSKN+ RL++L++T+DGFL+A++DL+ R GE+LG +QSG Sbjct: 594 GRVGRGEQKSYCVLLYQEPLSKNARARLTLLRDTQDGFLVAQKDLELRGPGELLGARQSG 653 Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 + +F IA H LL RK A IL + + T Sbjct: 654 LFRFRIADVIRHQHLLPAVRKAAFLILRRYSEFT 687 >gi|220936340|ref|YP_002515239.1| ATP-dependent DNA helicase RecG [Thioalkalivibrio sp. HL-EbGR7] gi|219997650|gb|ACL74252.1| ATP-dependent DNA helicase RecG [Thioalkalivibrio sp. HL-EbGR7] Length = 686 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 260/647 (40%), Positives = 378/647 (58%), Gaps = 20/647 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +GVG K + L+KI DLLF+ P + DR + + Sbjct: 4 PVTVLKGVGPKLAEKLAKI------GIRTVTDLLFHLPLRYQDRTRVMPMGSLRPGDEGV 57 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + H+ + RR + L+DGTG ITL FF+ + G ++ G+ ++ Sbjct: 58 VEGVVD-HAEVVFRGRRMLLVRLSDGTGSITLRFFHFSAAQQQG-LVRGLRLRCFGEARR 115 Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + + +VHP Y + S V+ L +Y GL +++ EAL+RL LP+W+ Sbjct: 116 GQAGLEIVHPEYRAVLDESASVDDTLT-PIYPTTEGLHQLSLRRLTDEALARLDRLPDWL 174 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRK----AKDFEWTSPARERLAYDELLAGQIALLLMRK 245 +L P + A +H P A + PA+ RLA++EL+A ++L +R Sbjct: 175 PPGVLNGAGLPDLETALRTVHRPPPDVPVAALLDGRHPAQRRLAFEELVAHHLSLARLRA 234 Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + E PI V+G++ ++ +PF+ T +Q+ I ++ DM++ + MLR++QGDVG+G Sbjct: 235 RTTDEPASPIKVKGELFAQLQARLPFALTGAQQRVIAELSTDMARPHPMLRLVQGDVGAG 294 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KTLVA+ A AVEAG QA +MAP ILA+QH+ + V ++G + RR Sbjct: 295 KTLVAVAACLHAVEAGYQAAVMAPTEILAEQHFHNFGDLLAPLGVNVAWLSGKLTVRARR 354 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----P 421 +AL +A G+A + +GTHALFQ+ + + L LV++DEQHRFGV QR+ L +K P Sbjct: 355 EALAEVAEGRARVAVGTHALFQEDVAFDDLALVVIDEQHRFGVHQRMALREKGNRDGRLP 414 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 H L+MTATPIPRTL +T+ D+D S I E P GR PI+TV + R EV+ER+ ++E Sbjct: 415 HQLIMTATPIPRTLAMTAYADLDYSVIDELPPGRTPIRTVAVSDKRRHEVVERISGAVAE 474 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540 G++AYW+C IEE + ++ + F L E ++ ++HGRM DKESVM FK G Sbjct: 475 GRQAYWVCTLIEESEALQAQAAEDTFAQLTEALPHVNVGLVHGRMKPRDKESVMARFKAG 534 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +LL+ATTVIEVG+DV +AS++IIENAE GLAQLHQLRGRVGRG SSC+LLY PPL Sbjct: 535 EIQLLVATTVIEVGVDVPNASLMIIENAERLGLAQLHQLRGRVGRGTAESSCVLLYRPPL 594 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 S + RL L+ T DGF IA DL+ R GE+LG +Q+G +F IA Sbjct: 595 SDTARKRLDALRATTDGFEIARIDLELRGPGEVLGTRQTGDMQFRIA 641 >gi|88607241|ref|YP_505812.1| ATP-dependent DNA helicase RecG [Anaplasma phagocytophilum HZ] gi|88598304|gb|ABD43774.1| ATP-dependent DNA helicase RecG [Anaplasma phagocytophilum HZ] Length = 702 Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust. Identities = 260/648 (40%), Positives = 399/648 (61%), Gaps = 19/648 (2%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE- 67 +F+ + +GV + L L K+ CG +R +DLL Y P S++DR +++ +S Sbjct: 27 MFSSIYDIQGVDNEKGLLLEKL--CGG---SRIVDLLLYAPYSYVDRR-NSQLTPLSRRG 80 Query: 68 RIVTITGYISQH-SSFQLQK--RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124 +VT G +H ++ +K + PYK+ L G+I L+FF L++V G++ Sbjct: 81 SVVTFLGVAKKHVPPYKRRKSSKSPYKVQLGTEIGDIWLIFFNYSQPYLESVLEVGKQCL 140 Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQD-VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183 V+GK++ + + HP Y +N + +E VYS+ GL + K+I AL + Sbjct: 141 VSGKLEIHCGEMQITHPDYCTNNLKKFTEICALEPVYSVTKGLHSRVIHKLIKVALKSIQ 200 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 EW+ DL+++ S+ S E+ +H P ++ E + RLAYDEL+A A+ Sbjct: 201 AQHEWLPADLIEENSWLSWQESVYKMHTP---ENVEEVRRIKGRLAYDELMAYHAAVYFA 257 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 R+ +++ G+ + V+G Q++L+ + F T Q+SAI++I + + +M ++LQGDVG Sbjct: 258 RQHGRRK-GVALEVKGTNYQEVLKRLGFELTAGQKSAIREITRAQTSDQQMAKLLQGDVG 316 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VAL AM VE+ GQ +M P +LA+QH +IKK + I +E++TG + Sbjct: 317 SGKTVVALFAMLNTVESSGQVAVMVPTEMLAEQHCSWIKKLLEGMDICIELLTGKTKNKN 376 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 A R+ G+ HI+IGTHALFQ+S++++ L LV++DEQ RFGV QR+KL +K + + Sbjct: 377 TIHA--RLLSGEIHILIGTHALFQESVKFHNLRLVVIDEQQRFGVLQRMKLIEKGDSADI 434 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L +TATPIPRTL G++D + +KPA R P+KT I+ + ID++ +RLK ++S Sbjct: 435 LFITATPIPRTLEQILYGNMDRITLKDKPACRLPVKTSIVKVCMIDDLCKRLKNMISREH 494 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI-AIIHGRMSDIDKESVMDSFKNGTC 542 K YWICP IE ++++ SV ERF L F ++I + HG M+ I ES + +F G Sbjct: 495 KIYWICPYIEGSEDNDVASVEERFEFLKNMFGNNIVGVSHGAMTQIGNESALQAFYAGNI 554 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 K+L+AT++IEVGI+V DA+II+IEN E FGL+QLHQLRGRVGRG + S CILL H P+SK Sbjct: 555 KVLVATSIIEVGINVPDATIIVIENPERFGLSQLHQLRGRVGRGHQQSYCILL-HGPVSK 613 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 +Y +LSVL+++ DGF IAE+DL R G++LG +QSG+ F A + Sbjct: 614 IAYRKLSVLRDSHDGFHIAEQDLILRGGGDMLGCRQSGIAAFKFADAQ 661 >gi|222475666|ref|YP_002564083.1| ATP-dependent DNA helicase (recG) [Anaplasma marginale str. Florida] gi|255003658|ref|ZP_05278622.1| ATP-dependent DNA helicase (recG) [Anaplasma marginale str. Puerto Rico] gi|255004782|ref|ZP_05279583.1| ATP-dependent DNA helicase (recG) [Anaplasma marginale str. Virginia] gi|222419804|gb|ACM49827.1| ATP-dependent DNA helicase (recG) [Anaplasma marginale str. Florida] Length = 699 Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust. Identities = 268/650 (41%), Positives = 380/650 (58%), Gaps = 17/650 (2%) Query: 33 CGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRRP 89 CG R ID+L Y P ++DR + ++E S R+VT T + QH + R P Sbjct: 48 CGG---HRLIDILLYAPYGYVDRTNK-SLAEDSVGRVVTFTALVKQHMPPPPGRRAHRAP 103 Query: 90 YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN-S 148 YKILL G ++L+FF L N G + V+GK++ + + +VHP Y+ Sbjct: 104 YKILLESEVGPVSLIFFNHSRGRLSNTLKVGHQCVVSGKLETHRGALQIVHPDYVTSKLD 163 Query: 149 QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI 208 Q +E +YS+ G K+I + LP EWI D+L + S+ S ++ Sbjct: 164 QLQEICTLEPLYSVVKGFQSKAMHKLIKAFVPLLPDWQEWIRPDVLSQNSWCSWKKSVEG 223 Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268 +H+P ++ + RLAYDELL+ A+ KQ + G+ + G + + RN Sbjct: 224 MHDPDSVREVHLY---KGRLAYDELLSYHAAMYFA-KQSRAAKGVSVKSCGVYRKLVERN 279 Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 + F T Q+SAI+ I D + + +M +LQGDVGSGKT+VAL A+ AVE+GGQ +M Sbjct: 280 LGFELTDGQKSAIEAITSDQASEKQMTMLLQGDVGSGKTVVALFAILNAVESGGQVALMV 339 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P ILA+QHY I I E++TG+ K +R+ G I+IGTHALFQ+ Sbjct: 340 PTEILAEQHYARISDALSGLNICTELLTGSTKNKQLLK--DRLLAGDICILIGTHALFQE 397 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 S+++ L LV++DEQ RFGV QR++L +K + VL ++ATPIPRTL G+ID + Sbjct: 398 SVRFRNLRLVVIDEQQRFGVVQRMRLAEKGESTDVLFISATPIPRTLEQILYGNIDRVTL 457 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 +P GR+P+ T +I I RIDEV RL+ +SEG KAYWICP+I + S S RF Sbjct: 458 FGRPQGRRPVHTSMIQIGRIDEVCHRLQNAISEGHKAYWICPRIVHSETSEMTSAEGRFI 517 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 +L E F + + I HG + +DK+ + +F G K+L+ATTVIEVGIDV DA+II+IEN Sbjct: 518 ALREIFGNLVGIAHGALPQVDKDKAIRAFHAGDIKILVATTVIEVGIDVPDATIIVIENP 577 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628 E FGL+QLHQLRGRVGR + S CILL H + + +Y +LSVL++++DGF IAE+DL R Sbjct: 578 EKFGLSQLHQLRGRVGRSSKQSFCILL-HGAIGRIAYRKLSVLRSSQDGFFIAEQDLLLR 636 Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL-TQDPDLTSVR 677 G+ILG KQSG +F A P ++L AR DA +L T + T+ R Sbjct: 637 GGGDILGYKQSGAVEFRFADPFDVQTVLN-ARSDAWSMLKTAEGRATACR 685 >gi|56417302|ref|YP_154376.1| ATP-dependent DNA helicase [Anaplasma marginale str. St. Maries] gi|56388534|gb|AAV87121.1| ATP-dependent DNA helicase [Anaplasma marginale str. St. Maries] Length = 699 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 268/650 (41%), Positives = 380/650 (58%), Gaps = 17/650 (2%) Query: 33 CGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRRP 89 CG R ID+L Y P ++DR + ++E S R+VT T + QH + R P Sbjct: 48 CGG---HRLIDILLYAPYGYVDRTNK-SLAEDSVGRVVTFTALVKQHMPPPPGRRAHRAP 103 Query: 90 YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN-S 148 YKILL G ++L+FF L N G + V+GK++ + + +VHP Y+ Sbjct: 104 YKILLESEVGPVSLIFFNHSRGRLSNTLKVGHQCVVSGKLETHRGALQIVHPDYVTSKLD 163 Query: 149 QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI 208 Q +E +YS+ G K+I + LP EWI D+L + S+ S ++ Sbjct: 164 QLQEICTLEPLYSVVKGFQSKAMHKLIKAFVPLLPDWQEWIRPDVLSQNSWCSWKKSVEG 223 Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268 +H+P ++ + RLAYDELL+ A+ KQ + G+ + G + + RN Sbjct: 224 MHDPDSVREVYLY---KGRLAYDELLSYHAAMYFA-KQSRAAKGVSVKSCGVYRKLVERN 279 Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 + F T Q+SAI+ I D + + +M +LQGDVGSGKT+VAL A+ AVE+GGQ +M Sbjct: 280 LGFELTDGQKSAIEAITSDQASEKQMTMLLQGDVGSGKTVVALFAILNAVESGGQVALMV 339 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P ILA+QHY I I E++TG+ K +R+ G I+IGTHALFQ+ Sbjct: 340 PTEILAEQHYARISDALSGLNICTELLTGSTKNKQLLK--DRLLAGDICILIGTHALFQE 397 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 S+++ L LV++DEQ RFGV QR++L +K + VL ++ATPIPRTL G+ID + Sbjct: 398 SVRFRNLRLVVIDEQQRFGVVQRMRLAEKGESTDVLFISATPIPRTLEQILYGNIDRVTL 457 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 +P GR+P+ T +I I RIDEV RL+ +SEG KAYWICP+I + S S RF Sbjct: 458 FGRPQGRRPVHTSMIQIGRIDEVCHRLQNAISEGHKAYWICPRIVHSETSEMTSAEGRFI 517 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 +L E F + + I HG + +DK+ + +F G K+L+ATTVIEVGIDV DA+II+IEN Sbjct: 518 ALREIFGNLVGIAHGALPQVDKDKAIRAFHAGDIKILVATTVIEVGIDVPDATIIVIENP 577 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628 E FGL+QLHQLRGRVGR + S CILL H + + +Y +LSVL++++DGF IAE+DL R Sbjct: 578 EKFGLSQLHQLRGRVGRSSKQSFCILL-HGDIGRIAYRKLSVLRSSQDGFFIAEQDLLLR 636 Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL-TQDPDLTSVR 677 G+ILG KQSG +F A P ++L AR DA +L T + T+ R Sbjct: 637 GGGDILGYKQSGAVEFRFADPFDVQTVLN-ARSDAWSMLKTAEGRATACR 685 >gi|269958308|ref|YP_003328095.1| ATP-dependent DNA helicase [Anaplasma centrale str. Israel] gi|269848137|gb|ACZ48781.1| ATP-dependent DNA helicase [Anaplasma centrale str. Israel] Length = 699 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 267/650 (41%), Positives = 380/650 (58%), Gaps = 17/650 (2%) Query: 33 CGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRRP 89 CG R ID+L Y P ++DR + ++E S R+VT T + QH + R P Sbjct: 48 CGG---HRLIDILLYAPYGYVDRTNK-SLAEDSVGRVVTFTALVKQHMPPPPGRRAHRAP 103 Query: 90 YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN-S 148 YKILL G ++L+FF L N G + V+GK++ + + +VHP Y+ Sbjct: 104 YKILLESEVGPVSLIFFNHSRGRLSNTLKVGHQCVVSGKLETHRGALQIVHPDYVTSKLD 163 Query: 149 QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI 208 Q +E +YS+ G K+I + LP EWI D+L + S+ S ++ Sbjct: 164 QLQEICTLEPLYSVVKGFQSKAVHKLIKAFVPLLPDWQEWIRPDVLSQNSWCSWKKSVEG 223 Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268 +H+P ++ + RLAYDELL+ A+ KQ + G+ + G + + RN Sbjct: 224 MHDPDSVREVHLY---KGRLAYDELLSYHAAMYFA-KQSRAAKGVSVKSCGVYRKLVERN 279 Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 + F T Q+SAI+ I D + + +M +LQGDVGSGKT+VAL A+ AVE+GGQ +M Sbjct: 280 LGFELTDGQKSAIEAITSDQASEKQMTMLLQGDVGSGKTVVALFAILNAVESGGQVALMV 339 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P ILA+QHY I I E++TG+ K +R+ G I+IGTHALFQ+ Sbjct: 340 PTEILAEQHYARISNALSGLNICTELLTGSTKNKQLLK--DRLLAGDICILIGTHALFQE 397 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 S+++ L LV++DEQ RFGV QR++L +K + VL ++ATPIPRTL G+ID + Sbjct: 398 SVRFRNLRLVVIDEQQRFGVLQRMRLAEKGESTDVLFISATPIPRTLEQILYGNIDRVTL 457 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 +P GR+P+ T +I I RIDEV RL+ +SEG KAYWICP+I + S S RF Sbjct: 458 FGRPQGRRPVHTSMIQIGRIDEVCHRLQNAISEGHKAYWICPRIVHSETSEMTSAEGRFL 517 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 +L + F + + I HG + +DK+ + +F G K+L+ATTVIEVGIDV DA+II+IEN Sbjct: 518 ALRKIFGNLVGIAHGALPQVDKDEAIRAFHAGDIKILVATTVIEVGIDVPDATIIVIENP 577 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628 E FGL+QLHQLRGRVGR + S CILL H + + +Y +LSVL++++DGF IAE+DL R Sbjct: 578 EKFGLSQLHQLRGRVGRSSKQSFCILL-HGDIGRIAYRKLSVLRSSQDGFFIAEQDLLLR 636 Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL-TQDPDLTSVR 677 G+ILG KQSG +F A P ++L AR DA +L T + T+ R Sbjct: 637 GGGDILGYKQSGAVEFRFADPFDVQTVLN-ARSDAWSMLKTAEGRATACR 685 >gi|262277199|ref|ZP_06054992.1| ATP-dependent DNA helicase RecG [alpha proteobacterium HIMB114] gi|262224302|gb|EEY74761.1| ATP-dependent DNA helicase RecG [alpha proteobacterium HIMB114] Length = 683 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 254/695 (36%), Positives = 404/695 (58%), Gaps = 15/695 (2%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 N LF P+ +G+G K L + N +DLL P+ IDR + PK+ ++ Sbjct: 3 NSLFDPVLKIKGIGPKIQKKLEE------KNIFNKVDLLLNLPTGTIDRRFCPKLDQLEI 56 Query: 67 ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 +I TI +++ F K P ++ D +I L+FF + +K + ++ ++ Sbjct: 57 GKISTIFATPIKYN-FPRIKNLPSRVSCVDEFSKIDLVFFNSRENYIKQILPLNEEVVIS 115 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186 GK+ KN+ + +P YI + + I + Y +G+S +KI E L + Sbjct: 116 GKVTFYKNKYQITNPDYIRSTDKGADIKKIMSKYPSISGVSDKTLQKIYSEEADNLSRID 175 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 EW + + L K + S E+ IHNP +D SP ERLA+DE+ + + ++K+ Sbjct: 176 EWHDLNFLNKMKWLSWPESLKRIHNPVYNEDVNKNSPYYERLAFDEIYSNLLIFNEIKKR 235 Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 +K IP + KI + +PF T Q + +I++DM +M+R+LQGDVGSGK Sbjct: 236 LEKIKKIPKKISLDQINKIKKLLPFQLTDDQNKCLDEIIEDMKSNKKMMRVLQGDVGSGK 295 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366 T++ALI+ + Q+ IM P ILA QHY+F +K +N I +E+++G ++K Sbjct: 296 TVLALISSYLNYLSNYQSAIMVPTEILAIQHYKFFQKIFKNQDIKIELLSGKTKIKDQKK 355 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLL 425 E++ + + +IIIGTH+LFQ+ I+++ L LV++DEQH+FGV+QR+ L+QK + V+L Sbjct: 356 VREKLKNNEINIIIGTHSLFQEKIEFFNLGLVVIDEQHKFGVKQRINLSQKGSDNTDVIL 415 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTLVLT+ GD++IS I KP I+T+ P+N++DE+I+ + ++EG + Sbjct: 416 MTATPIPRTLVLTNYGDMNISTIKNKPFSNNNIETLTKPLNKLDEIIDFVNKKINEGDQI 475 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545 YW+CP IEE ++ + ++R++ L + + I +IHG +S +K+ +M+ F +G K + Sbjct: 476 YWVCPLIEESEKLKLTAAIKRYDFLKDKISCDIGLIHGSLSKNEKDLIMEKFIDGNIKCI 535 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 I+TTVIEVGID +A+ I+IENAE FGLAQLHQLRGRVGR + C+L+Y +S+ Sbjct: 536 ISTTVIEVGIDNPNANTIVIENAERFGLAQLHQLRGRVGRSGSKAYCLLVYSSSISETGK 595 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665 RL ++K++ DGF I+EEDLK R G+I+G KQSG F IA P H L ++A+ + + Sbjct: 596 KRLKIMKDSCDGFFISEEDLKLRGFGDIIGYKQSGEKDFTIADPLYHSHLFDLAKDEIEK 655 Query: 666 ILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 L +ILL +++ ++ I G Sbjct: 656 -------LDEESYAKFKILLKIFKKDKVLNIIDTG 683 >gi|209696308|ref|YP_002264239.1| ATP-dependent DNA helicase RecG [Aliivibrio salmonicida LFI1238] gi|208010262|emb|CAQ80594.1| ATP-dependent DNA helicase RecG [Aliivibrio salmonicida LFI1238] Length = 693 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 262/653 (40%), Positives = 388/653 (59%), Gaps = 30/653 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG K + L+KI DLLF+ P + DR I+ + Sbjct: 10 PLTSLAGVGAKVAEKLAKI------GLVTIQDLLFHLPLRYEDRTKVYPIARVHAGLFAA 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + Q KR+ + ++DG G ITL FF M KN F EG+ + G+IK+ Sbjct: 64 VQGNVMS-CDLQFGKRKMLLVKISDGNGTITLRFFNFNAGM-KNHFSEGKLVHAYGEIKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL-IEA----VYSLPTGLSVDLFKKIIVEALSRL--PV 184 + +VHP Y FH PL IEA VY GL + + + +AL L Sbjct: 122 GGVGLEIVHPDYQFHTPSK---PLDIEATLTPVYPATDGLRQNTLRSLTDQALVLLDKAA 178 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIAL 240 + E + + L + ++ +A +IIH P + + E PA++RL +ELLA +++ Sbjct: 179 VTELLPQGLYNNQI--TLNQALHIIHRPDPSINLEAFDQGKHPAQQRLIIEELLAQNLSM 236 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L +R + ++E +P+ + QK+L +PF+PT +Q+ + +I D+++ + M+R++QG Sbjct: 237 LSVRSKGQQENALPLTTRSNLKQKLLAQLPFTPTNTQQRVVAEIEHDLAKPHPMMRLVQG 296 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKTLV+ +A A+E G Q +MAP +LA+QH K+ ++ I V + G + Sbjct: 297 DVGSGKTLVSALAAVQAIEHGYQVALMAPTELLAEQHAINFTKWFESMGIPVGWLAGKLT 356 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK--- 417 + K L RIA G+A +I+GTHALFQ +Q++ L LVI+DEQHRFGV QRL+L +K Sbjct: 357 GKAKEKELTRIASGEAKMIVGTHALFQQHVQFHHLALVIIDEQHRFGVDQRLELREKGLK 416 Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV +P R E+++++K Sbjct: 417 NGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAVPDTRRSEIVDKVK 476 Query: 477 -VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 L +G++AYW+C I++ + ++ + SL +I ++HGRM +K+ +M Sbjct: 477 TACLEDGRQAYWVCTLIDDSEVLEAQAASDTAESLRLQLPELNIGLVHGRMKSQEKQRIM 536 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 FK G LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C+L Sbjct: 537 QEFKEGKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGTVASHCVL 596 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 LYH PLSK + RLSVL+ + DGF+IA+ DL+ R GE+LG KQ+G+ F IA Sbjct: 597 LYHAPLSKTAQKRLSVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIA 649 >gi|121997758|ref|YP_001002545.1| ATP-dependent DNA helicase RecG [Halorhodospira halophila SL1] gi|121589163|gb|ABM61743.1| ATP-dependent DNA helicase RecG [Halorhodospira halophila SL1] Length = 691 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 268/675 (39%), Positives = 392/675 (58%), Gaps = 27/675 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L++ GVG + + L+++ DLL + P + DR I + V I Sbjct: 8 LTSLPGVGPRLAERLARL------GLHTVGDLLLHRPIRYEDRTRLRPIGGLQPGERVLI 61 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFY---RKTEMLKNVFFEGRKITVTGKI 129 G + + S +R+ L+DGTG++ L+FF+ R+ E L G + G++ Sbjct: 62 EGRV-EWSEVARGRRKRLLCRLSDGTGQLDLVFFHFHPRQAERLSR----GVVLRCFGEV 116 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLP-VL 185 + + M HP + D + P EA VY+ GL +K++ ALS LP Sbjct: 117 RAGYGGLQMAHPEHQRVAPGDADGPGEEALTPVYASTDGLHQGQLRKLVDAALSLLPGAA 176 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALL 241 PE + +PS+AEA +H P D E T PA R+A +ELLA + L Sbjct: 177 PECLPDAARVDPQWPSLAEALRTVHRPPPEADTETLLAGTHPAVRRVACEELLAHHLTLR 236 Query: 242 LMRKQFKKEIGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 R+ + E G P +G+ +AQ++L+++PF+ T +Q+ ++ +DM++ MLR+LQG Sbjct: 237 RRRQALRSEAGAPPLDQGEALAQRLLQSLPFALTGAQQRVDGELAEDMARSMPMLRLLQG 296 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA +A A AV +G QA +MAP +LA+QH ++ + Q + V ++G P Sbjct: 297 DVGSGKTVVAALACARAVGSGYQAALMAPTELLAEQHCRSLQGWFQPLGVEVAWLSGGAP 356 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 A RR A +R+A G+A I +GTHALFQ+ +Q+ +L LV+VDEQHRFGV QRL L K Sbjct: 357 AAERRAARQRLAEGRAGIAVGTHALFQEEVQFRRLGLVVVDEQHRFGVHQRLALKDKGGG 416 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH L MTATPIPRTL +T+ D+D+S + E+P GR P+KTV++ R EVI R++ Sbjct: 417 AEPHQLTMTATPIPRTLAMTAYADLDVSSLDERPPGRTPVKTVVVAERRRAEVIARIRAA 476 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDS 536 L EG++AYW+C IE E ++ + L + +A++HGRMS +KE M + Sbjct: 477 LDEGRQAYWVCTLIEASDELEAQAAEDTAAELDRAVGDAHRVALVHGRMSPAEKERTMAA 536 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F G LL+ATTVIEVG+DV +AS+++I+NAE GLAQLHQLRGRVGRG S+C+L+Y Sbjct: 537 FAQGEVALLVATTVIEVGVDVPNASLMVIDNAERLGLAQLHQLRGRVGRGRAASTCVLMY 596 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 H PLS+++ RL+VL+ T+DGF IA DL R GE+LG +Q+G +A LL Sbjct: 597 HGPLSESARQRLAVLRETDDGFAIARRDLDIRGPGELLGTRQTGALSLRVADLRRDADLL 656 Query: 657 EIARKDAKHILTQDP 671 E ++ +L Q P Sbjct: 657 EAVQQVGAELLEQAP 671 >gi|260557013|ref|ZP_05829230.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii ATCC 19606] gi|260409619|gb|EEX02920.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii ATCC 19606] Length = 681 Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust. Identities = 268/671 (39%), Positives = 401/671 (59%), Gaps = 29/671 (4%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75 +GVG + L K+ N DLLF+ P + DR ++++ R + G Sbjct: 7 LQGVGSASAALLEKL------NIFTTDDLLFHLPRDYEDRSTIIPMNQLVVGRSYLLEGE 60 Query: 76 ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 + + F L KR+ L+ D G++TL F Y + L + G ++ + G+++ Sbjct: 61 V-KSVDFPLGKRKSMAALIQDEFGKVTLRF-YHIYKNLTDKIKPGNRLRIFGEVRVGARG 118 Query: 136 IIMVHPHYIFHNSQDVNFPL----IEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIE 190 + + HP N + PL + A+Y GL+ ++ + +AL LPE + Sbjct: 119 LELYHPEIQLINE---HTPLPKTQLTAIYPSTDGLTQAKLREYVKQALKHHSDALPELLP 175 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQ 246 K Q + ++ EA + IH P + + + PA++RL ++EL+A QI+LL R+ Sbjct: 176 K---QYTNGYALKEALHYIHEPPVDANMIQLAQGSHPAQQRLIFEELVAHQISLL-TRRA 231 Query: 247 FKKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + ++I P K+ A+K+L +PF T +Q+ K+IL D+ Q MLR++QGDVG+G Sbjct: 232 YIRQIASPAFPSSKVLAKKLLEALPFQMTNAQKRVSKEILNDLKQHQPMLRLVQGDVGAG 291 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KTLVA +A A+EA Q +MAP ILA+QHY K++ + I V ++G R Sbjct: 292 KTLVAAVAACHALEADWQVALMAPTEILAEQHYLNFKRWFEPLGITVAWLSGKQKGKARA 351 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APH 422 A ++I G A +I+GTHALFQD++++ KL LVI+DEQHRFGV QRL L K PH Sbjct: 352 HAEQQIKEGHAELIVGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLALRNKGAEQLTPH 411 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV++R+ EG Sbjct: 412 QLVMTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLQRIASNCREG 471 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541 K+AYW+C +E+ + + ++ + + E F +I ++HG+M +K++VM +FKN Sbjct: 472 KQAYWVCTLVEQSETLDAQAAEATYQEMKERFPELNIGLVHGKMKADEKQAVMQAFKNNE 531 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +LLIATTVIEVG+DV +ASI++IENAE GL+QLHQLRGRVGRG + S C+LLY PPLS Sbjct: 532 LQLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCVLLYKPPLS 591 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 +N RLS+L+ + DGF+IAE+DL+ R GE+LG KQ+G F +A+ E D LL A Sbjct: 592 QNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLERDDHLLSQAHY 651 Query: 662 DAKHILTQDPD 672 A+ +L P+ Sbjct: 652 VAQQVLKDYPE 662 >gi|260549854|ref|ZP_05824070.1| ATP-dependent DNA helicase RecG [Acinetobacter sp. RUH2624] gi|260407104|gb|EEX00581.1| ATP-dependent DNA helicase RecG [Acinetobacter sp. RUH2624] Length = 681 Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust. Identities = 268/671 (39%), Positives = 400/671 (59%), Gaps = 29/671 (4%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75 +GVG + L K+ N DLLF+ P + DR ++++ R + G Sbjct: 7 LQGVGSASAALLEKL------NIFTTDDLLFHLPRDYEDRSTIIPMNQLVVGRSYLLEGE 60 Query: 76 ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 + + F KR+ L+ D G++TL F Y + L + G ++ + G+++ Sbjct: 61 V-KSVDFPPGKRKSMAALIQDEFGKVTLRF-YHIYKNLTDKIKPGHRLRIFGEVRVGARG 118 Query: 136 IIMVHPHYIFHNSQDVNFPL----IEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIE 190 + + HP N + PL + A+Y GL+ ++ + +AL LPE + Sbjct: 119 LELYHPEIQLINE---HTPLPKTQLTAIYPSTDGLTQPKLREYVKQALKHHSDALPELLP 175 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQ 246 K Q + ++ EA + IH P + + + PA++RL ++EL+A QI+LL R+ Sbjct: 176 K---QYTNGYALKEALHYIHEPPVDANMIQLAQGSHPAQQRLIFEELVAHQISLL-TRRA 231 Query: 247 FKKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + ++I P K+ A+K+L +PF T +Q+ K+IL D+ Q MLR++QGDVG+G Sbjct: 232 YIRQIASPAFPSSKVLAKKLLEALPFQMTNAQKRVSKEILSDLKQHQPMLRLVQGDVGAG 291 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KTLVA +A A+EA Q +MAP ILA+QHY K++ + I V ++G R Sbjct: 292 KTLVAAVAACHALEADWQVALMAPTEILAEQHYLNFKRWFEPLGITVAWLSGKQKGKART 351 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APH 422 +A ++I G A +I+GTHALFQD++++ KL LVI+DEQHRFGV QRL L K PH Sbjct: 352 QAEQQIKEGHAELIVGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLALRNKGAEQLTPH 411 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV+ R+ EG Sbjct: 412 QLVMTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLNRIATNCREG 471 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541 K+AYW+C +E+ + + ++ + + E F +I ++HG+M +K+SVM +FKN Sbjct: 472 KQAYWVCTLVEQSETLDAQAAEATYQEMKERFPELNIGLVHGKMKADEKQSVMQAFKNNE 531 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +LLIATTVIEVG+DV +ASI++IENAE GL+QLHQLRGRVGRG + S C+LLY PPLS Sbjct: 532 LQLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCVLLYKPPLS 591 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 +N RLS+L+ + DGF+IAE+DL+ R GE+LG KQ+G F +A+ E D LL A Sbjct: 592 QNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLERDDHLLSQAHY 651 Query: 662 DAKHILTQDPD 672 A+ +L P+ Sbjct: 652 VAQQVLKDYPE 662 >gi|254456582|ref|ZP_05070011.1| ATP-dependent DNA helicase RecG [Candidatus Pelagibacter sp. HTCC7211] gi|207083584|gb|EDZ61010.1| ATP-dependent DNA helicase RecG [Candidatus Pelagibacter sp. HTCC7211] Length = 683 Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust. Identities = 260/671 (38%), Positives = 407/671 (60%), Gaps = 21/671 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE--ISE 66 L + L+ +GVG K + L K N DLL+ P S DR + KI E I Sbjct: 10 LLSDLTALKGVGIKTTNLLKK------KNINNIFDLLWKLPKSSTDRSFSTKIVELRIGV 63 Query: 67 ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 E+ VTI + Q F + P K+L D TGEI +FF +K + G++ITV+ Sbjct: 64 EQTVTI---VPQKYLFPRIRNLPNKVLCKDETGEIDCIFFNSYEGYVKKILPIGKEITVS 120 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 GKI +NR + +P YI S+D + YSL G+S ++ KII + + LP+L Sbjct: 121 GKIGYFRNRYQLTNPKYI---SEDASLIKQSHNTYSLTEGISEKIYNKIINQIIENLPIL 177 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 EW K +L++ S ++ +H P ++ + +RLA+DE+ + + +RK Sbjct: 178 NEWHTKSILKRFDNISWNDSIKALHKPDNIGAYK--NNFYQRLAFDEIFSTFLVNSEIRK 235 Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + KK + + + +++ + FS T Q ++K+I D+S N+M R+LQGDVGSG Sbjct: 236 KIKKNKKLNKVLNIQKQNNLIKTLDFSLTTDQIKSLKEINNDLSSSNKMFRLLQGDVGSG 295 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK-YTQNTQIIVEIITGNMPQAHR 364 KT+V+L+A +V AG Q +MAP ILA+QH+ KK +++N ++ E+I+G + Sbjct: 296 KTIVSLLAAYNSVNAGFQVAVMAPTEILARQHFTLAKKIFSKNLRL--ELISGKSIYKEK 353 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP-HV 423 + L+ + + + II GTHA+FQ + + KL L+I+DEQH+FGV QR +L+ K V Sbjct: 354 KVILDNLCNHKIDIIFGTHAIFQKKVNFKKLGLIIIDEQHKFGVNQRKRLSDKGGVDCDV 413 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 LLMTATPIPRTL +T GD+D+S I EKP RKPIKT +++D+VI+ +K + G Sbjct: 414 LLMTATPIPRTLTMTVYGDMDLSIIREKPQSRKPIKTYSKLESKVDDVIQFIKKEIKLGN 473 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543 + +W+CP I+E K+ ++ S +++F L E F + ++++HG+ +KE ++++F N Sbjct: 474 QIFWVCPLIDESKKIDYSSAIKKFEFLKEKFPNKVSLLHGKTDTEEKEKILNNFLNKKFD 533 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TT+IEVGID +A++IIIENA FGL+QLHQLRGRVGRG++ S+CIL++ LS+N Sbjct: 534 ILVSTTIIEVGIDFPNANVIIIENANKFGLSQLHQLRGRVGRGDKDSTCILMFKSNLSEN 593 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 + R+++LK DGF+I+EED+K R G+ILG KQSG+ F +A P ++ L +A K+ Sbjct: 594 AKKRINILKQNNDGFIISEEDMKIRGFGDILGFKQSGIKNFKLADPIHNNDLFLLAEKEM 653 Query: 664 KHILTQDPDLT 674 + I + D++ Sbjct: 654 RRIEKSNEDIS 664 >gi|169794580|ref|YP_001712373.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii AYE] gi|213158849|ref|YP_002320847.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii AB0057] gi|215482169|ref|YP_002324351.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii AB307-0294] gi|239503248|ref|ZP_04662558.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii AB900] gi|301347851|ref|ZP_07228592.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii AB056] gi|301511999|ref|ZP_07237236.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii AB058] gi|301597379|ref|ZP_07242387.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii AB059] gi|332853125|ref|ZP_08434562.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii 6013150] gi|332868629|ref|ZP_08438285.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii 6013113] gi|169147507|emb|CAM85368.1| ATP-dependent DNA helicase [Acinetobacter baumannii AYE] gi|213058009|gb|ACJ42911.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii AB0057] gi|213988100|gb|ACJ58399.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii AB307-0294] gi|332728794|gb|EGJ60153.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii 6013150] gi|332733306|gb|EGJ64500.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii 6013113] Length = 681 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 267/671 (39%), Positives = 400/671 (59%), Gaps = 29/671 (4%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75 +GVG + L K+ N DLLF+ P + DR ++++ R + G Sbjct: 7 LQGVGSASAALLEKL------NIFTTDDLLFHLPRDYEDRSTIIPMNQLVVGRSYLLEGE 60 Query: 76 ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 + + F KR+ L+ D G++TL F Y + L + G ++ + G+++ Sbjct: 61 V-KSVDFPPGKRKSMAALIQDEFGKVTLRF-YHIYKNLTDKIKPGNRLRIFGEVRVGARG 118 Query: 136 IIMVHPHYIFHNSQDVNFPL----IEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIE 190 + + HP N + PL + A+Y GL+ ++ + +AL LPE + Sbjct: 119 LELYHPEIQLINE---HTPLPKTQLTAIYPSTDGLTQAKLREYVKQALKHHSDALPELLP 175 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQ 246 K Q + ++ EA + IH P + + + PA++RL ++EL+A QI+LL R+ Sbjct: 176 K---QYTNGYALKEALHYIHEPPVDANMIQLAQGSHPAQQRLIFEELVAHQISLL-TRRA 231 Query: 247 FKKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + ++I P K+ A+K+L +PF T +Q+ K+IL D+ Q MLR++QGDVG+G Sbjct: 232 YIRQIASPAFPSSKVLAKKLLEALPFQMTNAQKRVSKEILNDLKQHQPMLRLVQGDVGAG 291 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KTLVA +A A+EA Q +MAP ILA+QHY K++ + I V ++G R Sbjct: 292 KTLVAAVAACHALEADWQVALMAPTEILAEQHYLNFKRWFEPLGITVAWLSGKQKGKARA 351 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APH 422 A ++I G A +I+GTHALFQD++++ KL LVI+DEQHRFGV QRL L K PH Sbjct: 352 HAEQQIKEGHAELIVGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLALRNKGAEQLTPH 411 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV++R+ EG Sbjct: 412 QLVMTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLQRIASNCREG 471 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541 K+AYW+C +E+ + + ++ + + E F +I ++HG+M +K++VM +FKN Sbjct: 472 KQAYWVCTLVEQSETLDAQAAEATYQEMKERFPELNIGLVHGKMKADEKQAVMQAFKNNE 531 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +LLIATTVIEVG+DV +ASI++IENAE GL+QLHQLRGRVGRG + S C+LLY PPLS Sbjct: 532 LQLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCVLLYKPPLS 591 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 +N RLS+L+ + DGF+IAE+DL+ R GE+LG KQ+G F +A+ E D LL A Sbjct: 592 QNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLERDDHLLSQAHY 651 Query: 662 DAKHILTQDPD 672 A+ +L P+ Sbjct: 652 VAQQVLKDYPE 662 >gi|169632337|ref|YP_001706073.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii SDF] gi|169151129|emb|CAO99795.1| ATP-dependent DNA helicase [Acinetobacter baumannii] Length = 681 Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust. Identities = 268/672 (39%), Positives = 400/672 (59%), Gaps = 31/672 (4%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75 +GVG + L K+ N DLLF+ P + DR ++++ R + G Sbjct: 7 LQGVGSASAALLEKL------NIFTTDDLLFHLPRDYEDRSTIIPMNQLMVGRTYLLEGE 60 Query: 76 ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 + + F KR+ L+ D G++TL F Y + L + G ++ + G+++ Sbjct: 61 V-KSVDFPPGKRKSMAALIQDEFGKVTLRF-YHIYKNLTDKIKPGNRLRIFGEVRVGARG 118 Query: 136 IIMVHPHYIFHNSQDVNFPLIE--AVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKD 192 + + HP N + P + A+Y GL+ ++ + +AL LPE + K Sbjct: 119 LELYHPEIQLIN-EHTTLPKTQLTAIYPSTDGLTQAKLREYVKQALKHHSDALPELLPK- 176 Query: 193 LLQKKSFPSIAEAFNIIHNP-------RKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 Q + ++ EA + IH P + A+D + PA++RL ++EL+A QI+LL R+ Sbjct: 177 --QYTNGYALKEALHYIHEPPIDANMIQLAQD---SHPAQQRLIFEELVAHQISLL-TRR 230 Query: 246 QFKKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 + ++I P K+ A+K+L +PF T +Q+ K+IL D+ Q MLR++QGDVG+ Sbjct: 231 AYIRQIASPAFPSSKVLAKKLLEALPFQMTNAQKRVSKEILNDLKQHQPMLRLVQGDVGA 290 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKTLVA +A A+EA Q +MAP ILA+QHY K++ + I V ++G R Sbjct: 291 GKTLVAAVAACHALEADWQVALMAPTEILAEQHYLNFKRWFEPLGITVAWLSGKQKGKAR 350 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---AP 421 A +I G A +I+GTHALFQD++++ KL LVI+DEQHRFGV QRL L K P Sbjct: 351 AHAERQIKEGHAELIVGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLALRNKGAEQLTP 410 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 H L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV++R+ E Sbjct: 411 HQLVMTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLQRIASNCRE 470 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540 GK+AYW+C +E+ + + ++ + + E F +I ++HG+M +K++VM +FKN Sbjct: 471 GKQAYWVCTLVEQSETLDAQAAEATYQEMKERFPELNIGLVHGKMKADEKQAVMQAFKNN 530 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +LLIATTVIEVG+DV +ASI++IENAE GL+QLHQLRGRVGRG + S C+LLY PPL Sbjct: 531 ELQLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCVLLYKPPL 590 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S+N RLS+L+ + DGF+IAE+DL+ R GE+LG KQ+G F +A+ E D LL A Sbjct: 591 SQNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLERDDHLLSQAH 650 Query: 661 KDAKHILTQDPD 672 A+ +L P+ Sbjct: 651 YVAQQVLKDYPE 662 >gi|332532738|ref|ZP_08408612.1| ATP-dependent DNA helicase RecG [Pseudoalteromonas haloplanktis ANT/505] gi|332037765|gb|EGI74215.1| ATP-dependent DNA helicase RecG [Pseudoalteromonas haloplanktis ANT/505] Length = 693 Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust. Identities = 266/680 (39%), Positives = 393/680 (57%), Gaps = 32/680 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +GVG K + L K+ D+LF+ P + DR I+E+S V+ Sbjct: 10 PITELKGVGPKMAERLLKL------GILTVQDMLFHLPLRYEDRTRLYAINELSLHSHVS 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + I + S KRR +NDGTG +TL FF T KN F G+ I G++++ Sbjct: 64 VEATI-ETSQITFGKRRMLVCQINDGTGRLTLRFF-NFTAAQKNAFSAGKIIRCFGEVRR 121 Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186 + M HP Y N Q V L VYS GL K++ + ALS + +L Sbjct: 122 GRVGFEMSHPEYSISDTSNEQPVATTLT-PVYSTTEGL-----KQLSIRALSEQAIDLLN 175 Query: 187 EWIEKDLLQKKSFPS---IAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIA 239 ++ ++LL + PS +++A ++H P D + T PA++RL ++ELLA ++ Sbjct: 176 KYSVEELLPSQWQPSNMPLSDALLLLHRPPNDVDVTALEQGTHPAQQRLVFEELLAQNLS 235 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL +R+Q ++ + +N + + L +PF+PT +Q + +I DM M+R++Q Sbjct: 236 LLKVREQGQQVKAVALNPVNTLESQFLEQLPFAPTNAQSRVVAEIKGDMQHAYPMMRLVQ 295 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKTLVA ++ A+ G Q +MAP IL++QH + I V + G Sbjct: 296 GDVGSGKTLVAALSALTAIAQGFQVALMAPTEILSEQHGVNFTTWFNQIGITVAWLGGKT 355 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA- 418 R LE+IA G+A +I+GTHALFQD +++ L+L+++DEQHRFGV QRL L +K Sbjct: 356 KGKERVATLEKIASGEAQMIVGTHALFQDEVKFNNLVLIVIDEQHRFGVHQRLSLREKGK 415 Query: 419 ---TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 PH L+MTATPIPRTL +T+ D++ S I E P GR PI TV +P R D++I R+ Sbjct: 416 FGDCYPHQLVMTATPIPRTLAMTAYADLETSVIDELPPGRTPITTVALPDTRRDDIIARV 475 Query: 476 KVVLSE-GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533 K+ +E G++ YW+C I+E + ++ + L E ++ ++HGRM +K+++ Sbjct: 476 KLACNEQGRQVYWVCTLIDESEVLQCQAAEDSALQLKEALPDLNVGLVHGRMKSAEKQAI 535 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M FK G +L+ATTVIEVG+DV +AS+IIIEN E GLAQLHQLRGRVGRG S C+ Sbjct: 536 MSEFKAGNIHVLVATTVIEVGVDVPNASLIIIENPERLGLAQLHQLRGRVGRGATASHCV 595 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 LLYH PLS + RL VL+++ DGF+IAE DL+ R GE+LG KQ+G+ +F IA Sbjct: 596 LLYHAPLSHTAQKRLGVLRDSNDGFVIAERDLEIRGPGEVLGTKQTGLAEFKIADLTRDK 655 Query: 654 SLLEIARKDAKHILTQDPDL 673 +L R A+ +L Q P++ Sbjct: 656 HILNQVRPIAQQMLKQHPEV 675 >gi|184159612|ref|YP_001847951.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii ACICU] gi|229577088|ref|YP_001086094.2| ATP-dependent DNA helicase RecG [Acinetobacter baumannii ATCC 17978] gi|332876097|ref|ZP_08443881.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii 6014059] gi|183211206|gb|ACC58604.1| RecG-like helicase [Acinetobacter baumannii ACICU] gi|193078488|gb|ABO13492.2| ATP-dependent DNA helicase [Acinetobacter baumannii ATCC 17978] gi|322509522|gb|ADX04976.1| RecG [Acinetobacter baumannii 1656-2] gi|323519542|gb|ADX93923.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii TCDC-AB0715] gi|332735715|gb|EGJ66758.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii 6014059] Length = 681 Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust. Identities = 267/671 (39%), Positives = 399/671 (59%), Gaps = 29/671 (4%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75 +GVG + L K+ N DLLF+ P + DR ++++ R + G Sbjct: 7 LQGVGSASAALLEKL------NIFTTDDLLFHLPRDYEDRSTIIPMNQLVVGRSYLLEGE 60 Query: 76 ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 + + F KR+ L+ D G++TL F Y + L + G ++ + G+++ Sbjct: 61 V-KSVDFPPGKRKSMAALIQDEFGKVTLRF-YHIYKNLTDKIKPGNRLRIFGEVRVGARG 118 Query: 136 IIMVHPHYIFHNSQDVNFPL----IEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIE 190 + + HP N + PL + A+Y GL+ ++ + +AL LPE + Sbjct: 119 LELYHPEIQLINE---HTPLPKTQLTAIYPSTDGLTQAKLREYVKQALKHHSDALPELLP 175 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQ 246 K Q + ++ EA + IH P + + + PA++RL ++EL+A QI+LL R+ Sbjct: 176 K---QYTNGYALKEALHYIHEPPVDANMIQLAQGSHPAQQRLIFEELVAHQISLL-TRRA 231 Query: 247 FKKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + ++I P K+ A+K+L +PF T +Q+ K+IL D+ Q MLR++QGDVG+G Sbjct: 232 YIRQIASPAFPSSKVLAKKLLEALPFQMTNAQKRVSKEILNDLKQHQPMLRLVQGDVGAG 291 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KTLVA +A A+EA Q +MAP ILA+QHY K++ + I V ++G R Sbjct: 292 KTLVAAVAACHALEADWQVALMAPTEILAEQHYLNFKRWFEPLGITVAWLSGKQKGKARA 351 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APH 422 A ++I G A +I+GTHALFQD++++ KL LVI+DEQHRFGV QRL L K PH Sbjct: 352 HAEQQIKEGHAELIVGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLALRNKGAEQLTPH 411 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV+ R+ EG Sbjct: 412 QLVMTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLHRIASNCREG 471 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541 K+AYW+C +E+ + + ++ + + E F +I ++HG+M +K++VM +FKN Sbjct: 472 KQAYWVCTLVEQSETLDAQAAEATYQEMKERFPELNIGLVHGKMKADEKQAVMQAFKNNE 531 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +LLIATTVIEVG+DV +ASI++IENAE GL+QLHQLRGRVGRG + S C+LLY PPLS Sbjct: 532 LQLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCVLLYKPPLS 591 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 +N RLS+L+ + DGF+IAE+DL+ R GE+LG KQ+G F +A+ E D LL A Sbjct: 592 QNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLERDDHLLSQAHY 651 Query: 662 DAKHILTQDPD 672 A+ +L P+ Sbjct: 652 VAQQVLKDYPE 662 >gi|262280238|ref|ZP_06058022.1| ATP-dependent DNA helicase RecG [Acinetobacter calcoaceticus RUH2202] gi|262258016|gb|EEY76750.1| ATP-dependent DNA helicase RecG [Acinetobacter calcoaceticus RUH2202] Length = 681 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 268/671 (39%), Positives = 398/671 (59%), Gaps = 29/671 (4%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75 +GVG + L K+ N DLLF+ P + DR ++++ R + G Sbjct: 7 LQGVGSASAALLEKL------NIFTTDDLLFHLPRDYEDRSTIIAMNQLVVGRSYLLEGE 60 Query: 76 ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 + + F KR+ L+ D G++TL F Y + L + G ++ + G+++ Sbjct: 61 V-RSIDFPPGKRKSMAALVQDEFGKVTLRF-YHIYKNLTDKIKPGHRLRIFGEVRVGARG 118 Query: 136 IIMVHPHYIFHNSQDVNFPL----IEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIE 190 + M HP N + PL + A+Y GL+ ++ + +AL LPE + Sbjct: 119 LEMYHPEIQLINE---HTPLPKTQLTAIYPSTDGLTQPKLREYVKQALKHHSDALPELLP 175 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQ 246 K Q + ++ EA IH P + + + PA++RL ++EL+A QI+LL R+ Sbjct: 176 K---QYTNGYALKEALYYIHEPPVDANMVQLAQGSHPAQQRLIFEELVAHQISLL-NRRA 231 Query: 247 FKKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + ++I P KI A+K+L +PF T +Q+ K+IL D+ Q MLR++QGDVG+G Sbjct: 232 YIRQIASPAFSSSKILAKKLLEALPFQMTNAQKRVSKEILNDLKQNQPMLRLVQGDVGAG 291 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KTLVA +A A+EA Q +MAP ILA+QHY K++ + I V ++G R Sbjct: 292 KTLVAAVAACHALEADWQVALMAPTEILAEQHYLNFKRWFEPLGITVAWLSGKQKGKARA 351 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APH 422 +A ++I G A +IIGTHALFQDS+ + KL LVI+DEQHRFGV QRL L K PH Sbjct: 352 QAEQQIKEGHAELIIGTHALFQDSVGFAKLGLVIIDEQHRFGVDQRLALRNKGAEQFTPH 411 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV++R+ +G Sbjct: 412 QLVMTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLQRIASNCRDG 471 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541 K+AYW+C +E+ + + ++ + + E F +I ++HG+M +K++VM +FKN Sbjct: 472 KQAYWVCTLVEQSETLDAQAAEATYQEMKERFPELNIGLVHGKMKADEKQAVMQAFKNNE 531 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +LLIATTVIEVG+DV ++SI++IENAE GL+QLHQLRGRVGRG + S C+LLY PLS Sbjct: 532 LQLLIATTVIEVGVDVPNSSIMVIENAERLGLSQLHQLRGRVGRGAQASFCVLLYKTPLS 591 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 +N RLS+L+ + DGF+IAE+DL+ R GE+LG KQ+G F +A+ E D LL A Sbjct: 592 QNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLERDDHLLSQAHY 651 Query: 662 DAKHILTQDPD 672 A+ +L P+ Sbjct: 652 VAQQVLKDYPE 662 >gi|119503539|ref|ZP_01625622.1| ATP-dependent DNA helicase RecG [marine gamma proteobacterium HTCC2080] gi|119460601|gb|EAW41693.1| ATP-dependent DNA helicase RecG [marine gamma proteobacterium HTCC2080] Length = 690 Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust. Identities = 259/679 (38%), Positives = 388/679 (57%), Gaps = 23/679 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L A + T RGVG K L ++ C D+L++ P + DR I + + Sbjct: 9 LSASVGTLRGVGPKLQQRLEELGLCC------VEDILYHFPLRYQDRTQLTAIGSLKDGV 62 Query: 69 IVTITGYISQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 I G I S + RRP I+ + DGTG +T+ FF+ + + + G I + G Sbjct: 63 DAVIQGSIRLSSI--VPGRRPTLIVKVEDGTGILTVRFFHFRRAQAQQMK-PGLPIALFG 119 Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187 + ++ + MVHP Y ++ + +Y GL ++ + +AL +L + Sbjct: 120 QARRSGAGLDMVHPEYRLEDADIFLEAALTPIYPTVEGLGQGFWRNLTDQALI---ILKQ 176 Query: 188 WIEKDLLQ--KKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALL 241 +DLL S ++ EA +H P EW PA+ RLA +EL+A ++L Sbjct: 177 NSPEDLLHGIADSPFALVEAIQFLHRPPPNAPIDRIREWEHPAQLRLALEELVAHNLSLQ 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 ++R Q K + + + + IA L ++PF PT +Q+ I++I DM+ + MLR++QGD Sbjct: 237 MLRAQEKACLAVAMKSDQSIAGPFLSHLPFKPTAAQQRVIQEIAHDMTLPSPMLRLIQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT VA +A A+EAG Q +MAP +L +QH + K++ + + + ++G + Sbjct: 297 VGSGKTFVAAMACITAIEAGQQVALMAPTELLGEQHLQTFKQWLEPFGVRIAWLSGRVKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA--- 418 R L+ I+ G +++GTHALFQ+ + + L LVIVDEQHRFGV QRL LT+KA Sbjct: 357 RARSAVLQEISEGSVALVVGTHALFQEGVTFASLALVIVDEQHRFGVHQRLALTEKASGP 416 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 T PH L++TATPIPRTL + + D+D S I E P GR P++T ++ R D+VI+R+ Sbjct: 417 TLPHQLVLTATPIPRTLSMVAYADLDCSVIDELPPGRTPVQTTLLDSQRRDQVIQRVGAG 476 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 EG++AYW+C IEE + + R+ L + I +IHGR+ DKE++M +F Sbjct: 477 CGEGRQAYWVCTLIEESENLDARAAEATAELLQAQLPNLHIGLIHGRLPPADKEAMMAAF 536 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 K G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLY Sbjct: 537 KAGKIELLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGATASHCVLLYQ 596 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PLS+ RL V++ + DGF IAE+DL R GE+LG +Q+G+ F +AQ H+ LLE Sbjct: 597 APLSQRGRERLDVMRRSNDGFYIAEQDLLFRGPGELLGTRQTGLTSFRVAQLPAHEMLLE 656 Query: 658 IARKDAKHILTQDPDLTSV 676 + A+ ++ PD ++ Sbjct: 657 QVAEIAESLVQNYPDRCTL 675 >gi|293610810|ref|ZP_06693110.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827154|gb|EFF85519.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 681 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 264/668 (39%), Positives = 397/668 (59%), Gaps = 23/668 (3%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75 +GVG + L K+ N DLLF+ P + DR ++++ R + G Sbjct: 7 LQGVGSASAALLEKL------NIFTTDDLLFHLPRDYEDRSTIIPMNQLVVGRSYLLEGE 60 Query: 76 ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 + + F KR+ L+ D G++TL F Y + L + G ++ + G+++ Sbjct: 61 V-KSIDFPPGKRKSMAALVQDEFGKVTLRF-YHIYKNLTDKIKPGHRLRIFGEVRVGARG 118 Query: 136 IIMVHPH-YIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDL 193 + M HP + H + + A+Y GL+ ++ + +AL LPE + K Sbjct: 119 LEMYHPEIQLIHEHTPLPKTQLTAIYPSTDGLTQPKLREYVKQALKHHSDALPELLPK-- 176 Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKK 249 Q + ++ EA IH P + + + PA++RL ++EL+A QI+LL R+ + + Sbjct: 177 -QYTNGYALKEALYYIHEPPVDANMLQLAQGSHPAQQRLIFEELVAHQISLL-NRRAYIR 234 Query: 250 EIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 +I P K+ A+K+L +PF T +Q+ K+IL D+ Q MLR++QGDVG+GKTL Sbjct: 235 QIASPAFSSSKVLAKKLLEALPFQMTNAQKRVSKEILNDLKQHQPMLRLVQGDVGAGKTL 294 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VA +A A+EA Q +MAP ILA+QHY K++ + I V ++G R +A Sbjct: 295 VAAVAACHALEADWQVALMAPTEILAEQHYLNFKRWFEPLGITVAWLSGKQKGKARAQAE 354 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLL 425 ++I G A +I+GTHALFQD++ + KL LVI+DEQHRFGV QRL L K PH L+ Sbjct: 355 QQIKEGHAELIVGTHALFQDNVGFAKLGLVIIDEQHRFGVDQRLALRNKGAEQFTPHQLV 414 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV++R+ EGK+A Sbjct: 415 MTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLQRIASNCREGKQA 474 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKL 544 YW+C +E+ + + ++ + + E F +I ++HG+M +K++VM +FKN +L Sbjct: 475 YWVCTLVEQSETLDAQAAEATYQEMKERFPELNIGLVHGKMKADEKQAVMQAFKNNELQL 534 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 LIATTVIEVG+DV ++SI++IENAE GL+QLHQLRGRVGRG + S C+LLY PLS+N Sbjct: 535 LIATTVIEVGVDVPNSSIMVIENAERLGLSQLHQLRGRVGRGAQASFCVLLYKTPLSQNG 594 Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 RLS+L+ + DGF+IAE+DL+ R GE+LG KQ+G F +A+ E D LL A A+ Sbjct: 595 QERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLERDDHLLSQAHYVAQ 654 Query: 665 HILTQDPD 672 +L P+ Sbjct: 655 QVLKDYPE 662 >gi|254433615|ref|ZP_05047123.1| ATP-dependent DNA helicase RecG [Nitrosococcus oceani AFC27] gi|207089948|gb|EDZ67219.1| ATP-dependent DNA helicase RecG [Nitrosococcus oceani AFC27] Length = 707 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 260/656 (39%), Positives = 383/656 (58%), Gaps = 23/656 (3%) Query: 7 NPLF--APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64 NPL P++ +GVG + L+++ C + DLLF+ P + DR I + Sbjct: 16 NPLALDTPVTALKGVGPSLANRLARLGLC------KVQDLLFHLPQRYQDRTRVAPIGTL 69 Query: 65 SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124 + R I G I Q + +RR L+DGTG+I L FF+ + +N G ++ Sbjct: 70 QKGREALIEGEI-QLCELRPGRRRSLLCSLSDGTGQIFLRFFH-FSAWQQNSLTPGARVC 127 Query: 125 VTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182 G++++ + MVHP Y + + V + VY GL + +I L Sbjct: 128 CFGELRQGAAGLEMVHPDYRCLPEDRPTVTETYLTPVYPATEGLRQSSLRDLIQGVFKDL 187 Query: 183 --PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAG 236 + +++ LL+ P++ EA +H P E PA++RLA++ELLA Sbjct: 188 GEEGIIDYLPSGLLEGVGLPTLNEALIYLHQPPPDAPLNLLAEGKHPAQQRLAFEELLAH 247 Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 ++L + + + ++ EG++ Q+ L +PF T +Q +++IL DM+Q++ M R Sbjct: 248 HLSLRQLHLRASRLQAPLLSSEGQLQQRFLATLPFPLTAAQSQVVQEILADMAQESPMQR 307 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 +LQGDVGSGKT+VA +A+ AVEAG QAV+MAP +LA+QH ++ + +I VE +T Sbjct: 308 LLQGDVGSGKTVVAALAILQAVEAGYQAVLMAPTELLAEQHLRVLQGWFCPFEIRVEWLT 367 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 RR++LER+ G+ + +GTHALFQ+ + ++KL LV+VDEQHRFGV+QRL L + Sbjct: 368 AKRTTKARRESLERLEGGETPVAVGTHALFQEGVNFHKLGLVVVDEQHRFGVEQRLALRE 427 Query: 417 KA----TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 K PH L+MTATPIPRTL +T+ D+D S I + P GR P+ T + R DEV+ Sbjct: 428 KGRYGNCCPHQLIMTATPIPRTLAMTAYADLDTSVIDQLPPGRIPVATAVASDRRRDEVV 487 Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKE 531 R++ EG++AYW+C IEE ++ E L E I +IHGRM +KE Sbjct: 488 ARVRRACREGRQAYWVCTLIEESDSLQAQAAEESAAELAEALPELCIGLIHGRMKTQEKE 547 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 M +FK+G LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S Sbjct: 548 RAMAAFKSGDFHLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGAADSY 607 Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 C+LLYH PLS+ S RL+ L+ T DGF IA DL+ R GE+LG +Q+G+P++ +A Sbjct: 608 CVLLYHGPLSELSRARLACLRATNDGFEIARRDLELRGPGEVLGTRQTGLPQYRVA 663 >gi|77164722|ref|YP_343247.1| ATP-dependent DNA helicase RecG [Nitrosococcus oceani ATCC 19707] gi|76883036|gb|ABA57717.1| ATP-dependent DNA helicase RecG [Nitrosococcus oceani ATCC 19707] Length = 712 Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust. Identities = 260/656 (39%), Positives = 383/656 (58%), Gaps = 23/656 (3%) Query: 7 NPLF--APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64 NPL P++ +GVG + L+++ C + DLLF+ P + DR I + Sbjct: 21 NPLALDTPVTALKGVGPSLANRLARLGLC------KVQDLLFHLPQRYQDRTRVAPIGTL 74 Query: 65 SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124 + R I G I Q + +RR L+DGTG+I L FF+ + +N G ++ Sbjct: 75 QKGREALIEGEI-QLCELRPGRRRSLLCSLSDGTGQIFLRFFH-FSAWQQNSLTPGARVC 132 Query: 125 VTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182 G++++ + MVHP Y + + V + VY GL + +I L Sbjct: 133 CFGELRQGAAGLEMVHPDYRCLPEDRPTVTETYLTPVYPATEGLRQSSLRDLIQGVFKDL 192 Query: 183 --PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAG 236 + +++ LL+ P++ EA +H P E PA++RLA++ELLA Sbjct: 193 GEEGIIDYLPSGLLEGVGLPTLNEALIYLHQPPPDAPLNLLAEGKHPAQQRLAFEELLAH 252 Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 ++L + + + ++ EG++ Q+ L +PF T +Q +++IL DM+Q++ M R Sbjct: 253 HLSLRQLHLRASRLQAPLLSSEGQLQQRFLATLPFPLTAAQSQVVQEILADMAQESPMQR 312 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 +LQGDVGSGKT+VA +A+ AVEAG QAV+MAP +LA+QH ++ + +I VE +T Sbjct: 313 LLQGDVGSGKTVVAALAILQAVEAGYQAVLMAPTELLAEQHLRVLQGWFCPFEIRVEWLT 372 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 RR++LER+ G+ + +GTHALFQ+ + ++KL LV+VDEQHRFGV+QRL L + Sbjct: 373 AKRTTKARRESLERLEGGETPVAVGTHALFQEGVNFHKLGLVVVDEQHRFGVEQRLALRE 432 Query: 417 KA----TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 K PH L+MTATPIPRTL +T+ D+D S I + P GR P+ T + R DEV+ Sbjct: 433 KGRYGNCCPHQLIMTATPIPRTLAMTAYADLDTSVIDQLPPGRIPVATAVASDRRRDEVV 492 Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKE 531 R++ EG++AYW+C IEE ++ E L E I +IHGRM +KE Sbjct: 493 ARVRRACREGRQAYWVCTLIEESDSLQAQAAEESAAELAEALPELCIGLIHGRMKTQEKE 552 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 M +FK+G LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S Sbjct: 553 RAMAAFKSGDFHLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGAADSY 612 Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 C+LLYH PLS+ S RL+ L+ T DGF IA DL+ R GE+LG +Q+G+P++ +A Sbjct: 613 CVLLYHGPLSELSRARLACLRATNDGFEIARRDLELRGPGEVLGTRQTGLPQYRVA 668 >gi|59713067|ref|YP_205843.1| ATP-dependent DNA helicase [Vibrio fischeri ES114] gi|59481168|gb|AAW86955.1| ATP-dependent DNA helicase [Vibrio fischeri ES114] Length = 693 Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust. Identities = 262/672 (38%), Positives = 399/672 (59%), Gaps = 30/672 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG K + L KI DLLF+ P + DR ++ + Sbjct: 10 PLTSLAGVGAKVAEKLEKI------GLVSIQDLLFHLPLRYEDRTRVYPMARVHSGLFAA 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + Q KR+ + ++DG G ITL FF M KN F EG+ + G+IK+ Sbjct: 64 VQGKVMS-CDMQFGKRKMLLVKISDGNGTITLRFFNFNAGM-KNSFSEGKLVHAYGEIKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL-IEA----VYSLPTGLSVDLFKKIIVEALSRL--PV 184 + + +VHP Y FH PL IEA VY GL + + + +AL L Sbjct: 122 GGSGLEIVHPEYQFHVPSQ---PLEIEASLTPVYPTTDGLRQNTLRSLTDQALELLDKAA 178 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIAL 240 + E + + L + ++ +A +IIH P + + E PA++RL +ELLA +++ Sbjct: 179 VTELLPQGLYNNQI--TLNQALHIIHRPDPSINLDAFDEGKHPAQQRLIMEELLAQNLSM 236 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L +R + ++E +P+ + QK+L +PF+PT +Q+ + +I QD+++ + M+R++QG Sbjct: 237 LSVRSKGQQEDALPLATLTNLKQKLLAQLPFTPTNAQQRVVAEIEQDLAKPHPMMRLVQG 296 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKTLVA +A A+E G Q +MAP +LA+QH + ++ I V + G + Sbjct: 297 DVGSGKTLVAALAAVQAIEHGYQVALMAPTELLAEQHAANFAHWFESMGITVGWLAGKLT 356 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK--- 417 + K LERIA G+A +I+GTHALFQ +++++ L LVI+DEQHRFGV QRL+L +K Sbjct: 357 GKAKEKELERIASGEAKMIVGTHALFQQNVEFHHLALVIIDEQHRFGVDQRLELREKGQK 416 Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+T+ +P R DE++ +++ Sbjct: 417 NGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTIAVPDTRRDEIVNKVR 476 Query: 477 -VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 +++G++AYW+C I++ + ++ + +L +I ++HGRM +K+ +M Sbjct: 477 SACMNDGRQAYWVCTLIDDSEVLEAQAASDTAEALRLQLPELNIGLVHGRMKPKEKQQIM 536 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 FK G LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C+L Sbjct: 537 QEFKEGNLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVL 596 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 LYH PLSK + RLSVL+ + DGF+IA+ DL+ R GE+LG KQ+G+ F IA Sbjct: 597 LYHSPLSKTAQKRLSVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQH 656 Query: 655 LLEIARKDAKHI 666 L+ ++ A+H+ Sbjct: 657 LIPEVQRIARHL 668 >gi|325123619|gb|ADY83142.1| ATP-dependent DNA helicase [Acinetobacter calcoaceticus PHEA-2] Length = 681 Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust. Identities = 263/668 (39%), Positives = 397/668 (59%), Gaps = 23/668 (3%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75 +GVG + L K+ N DLLF+ P + DR ++++ R + G Sbjct: 7 LQGVGSASAALLEKL------NIFTTDDLLFHLPRDYEDRSTIIPMNQLVVGRSYLLEGE 60 Query: 76 ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 + + F KR+ L+ D G++TL F Y + L + G ++ + G+++ Sbjct: 61 V-KSIDFPPGKRKSMAALVQDEFGKVTLRF-YHIYKNLTDKIKPGHRLRIFGEVRVGARG 118 Query: 136 IIMVHPH-YIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDL 193 + M HP + H + + A+Y GL+ ++ + +AL LPE + K Sbjct: 119 LEMYHPEIQLIHEHTPLPKTQLTAIYPSTDGLTQPKLREYVKQALKHHSDALPELLPK-- 176 Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKK 249 Q + ++ EA IH P + + + PA++RL ++EL+A QI+LL R+ + + Sbjct: 177 -QYTNGYALKEALYYIHEPPVDANMLQLAQGSHPAQQRLIFEELVAHQISLL-NRRAYIR 234 Query: 250 EIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 +I P K+ A+K+L +PF T +Q+ K+IL D+ Q MLR++QGDVG+GKTL Sbjct: 235 QIASPAFSSSKVLAKKLLEALPFQMTNAQKRVSKEILNDLKQHQPMLRLVQGDVGAGKTL 294 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VA +A A+EA Q +MAP ILA+QHY K++ + I V ++G R +A Sbjct: 295 VAAVAACHALEADWQVALMAPTEILAEQHYLNFKRWFEPLGITVAWLSGKQKGKARAQAE 354 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLL 425 ++I G A +I+GTHALFQD++ + KL LVI+DEQHRFGV QRL L K PH L+ Sbjct: 355 QQIKEGHAELIVGTHALFQDNVGFAKLGLVIIDEQHRFGVDQRLALRNKGAEQFTPHQLV 414 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV++R+ +GK+A Sbjct: 415 MTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLQRIASNCRDGKQA 474 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKL 544 YW+C +E+ + + ++ + + E F +I ++HG+M +K++VM +FKN +L Sbjct: 475 YWVCTLVEQSETLDAQAAEATYQEMKERFPELNIGLVHGKMKADEKQAVMQAFKNNELQL 534 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 LIATTVIEVG+DV ++SI++IENAE GL+QLHQLRGRVGRG + S C+LLY PLS+N Sbjct: 535 LIATTVIEVGVDVPNSSIMVIENAERLGLSQLHQLRGRVGRGAQASFCVLLYKTPLSQNG 594 Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 RLS+L+ + DGF+IAE+DL+ R GE+LG KQ+G F +A+ E D LL A A+ Sbjct: 595 QERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLERDDHLLSQAHYVAQ 654 Query: 665 HILTQDPD 672 +L P+ Sbjct: 655 QVLKDYPE 662 >gi|119947094|ref|YP_944774.1| ATP-dependent DNA helicase RecG [Psychromonas ingrahamii 37] gi|119865698|gb|ABM05175.1| ATP-dependent DNA helicase RecG [Psychromonas ingrahamii 37] Length = 690 Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust. Identities = 272/677 (40%), Positives = 395/677 (58%), Gaps = 26/677 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+ +GVG K S L+KI DLLF+ P + DR I+++ + V+ Sbjct: 7 PLTALKGVGIKASQRLAKI------GLHSVADLLFHLPLHYQDRTRIYAIADLKDSMQVS 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + Q KRR K ++DG+G +TL FF+ T +N F +G I G+ ++ Sbjct: 61 VQGKVLS-CDLQSGKRRILKCKISDGSGSVTLNFFHFNTAQ-QNSFVKGALIKCFGEFRR 118 Query: 132 LKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187 + + HP Y N+ + + +Y GL + + + +AL L + E Sbjct: 119 GYHGFEVTHPDYRLLNAMQQSHVEETLTPIYPSTEGLKQNSLRSLTEQALLHLEQHQIDE 178 Query: 188 WIEKDLLQKKSFP-SIAEAFNIIHNPRKAKDFEW----TSPARERLAYDELLAGQIALLL 242 + LL + P S+++A IH P E T PA++RL +EL A QI++L Sbjct: 179 LLPTHLL---AHPISLSDALFYIHRPPPDASIEQLENKTHPAQQRLIIEELSAQQISMLS 235 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R ++ I + G + ++L+++PFS T +Q +I QD+ Q M+R++QGDV Sbjct: 236 LRVNAQQHQAIAVKESGLLQDRLLQSLPFSLTNAQHRVNWEIQQDLKQTIPMMRLVQGDV 295 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA IA + +EAG Q +MAP +LA+QH +K+ + V +++G M Sbjct: 296 GSGKTLVAAIAALSVIEAGYQVALMAPTELLAEQHLLNFQKWFAALDVSVGMLSGKMRVK 355 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--- 419 +R LE I+ G + +++GTHALFQ+S+Q+ L L+IVDEQHRFGV QRL L +K Sbjct: 356 EKRSQLENISLGLSKMVVGTHALFQESVQFNNLALIIVDEQHRFGVHQRLALREKGRSGD 415 Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL-KV 477 APH L MTATPIPRTL +T+ D+++S I E P GR IKTV + R DEVI+R+ + Sbjct: 416 FAPHQLTMTATPIPRTLAMTAYADLNVSVIDELPPGRTAIKTVALVDKRRDEVIQRVYQA 475 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 +EG++AYW+C IEE + ++ N + I ++HGRM +K+SVMD+ Sbjct: 476 CKNEGRQAYWVCTLIEESEVLECQTAENTANEMQLALPDLRIGLVHGRMKANEKQSVMDA 535 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRGE S C+LLY Sbjct: 536 FKEGQLDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGEVASHCVLLY 595 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PLSK + RL VL+ + DGF IAE+DL R GE+LG +Q+G+ +F IA SLL Sbjct: 596 KNPLSKTAQRRLQVLRESNDGFYIAEQDLAIRGPGEVLGTRQTGVAEFKIADLLRDQSLL 655 Query: 657 EIARKDAKHILTQDPDL 673 A++ A ++ P+L Sbjct: 656 PQAQQLAFQLMHSFPEL 672 >gi|308047829|ref|YP_003911395.1| ATP-dependent DNA helicase RecG [Ferrimonas balearica DSM 9799] gi|307630019|gb|ADN74321.1| ATP-dependent DNA helicase RecG [Ferrimonas balearica DSM 9799] Length = 698 Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust. Identities = 266/679 (39%), Positives = 398/679 (58%), Gaps = 35/679 (5%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRPKISEISEERIV 70 P++T +GVG K + K++ G R + DLL + P + DR ++ ++ + Sbjct: 16 PVTTLKGVGDKLA---EKLLRLG----VRSVGDLLLHLPLRYEDRTRIWPVAALTPGQNA 68 Query: 71 TITGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 T+ G + S + S+ +RR + L DG+G I+L FF K+ F G ++ G+ Sbjct: 69 TVEGEVLSANVSYG--RRRRMTVQLADGSGTISLHFFNFALAQ-KDSFVVGARVRAFGEA 125 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALS--RLP 183 + I MVHP Y H + PL+E VY GL + +K+ EAL+ R Sbjct: 126 RAGMRHIEMVHPEY--HVLGEHTHPLLEESLTPVYPTTEGLKQAILRKLTDEALTLLRHH 183 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS------PARERLAYDELLAGQ 237 LPE + + L + P +++A + IH P D T PA++RL +ELLA Sbjct: 184 PLPELLPEGLYPHQ-LP-LSDALHFIHRP--PPDASLTQLESGEHPAQQRLVMEELLAQN 239 Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 +++L +R +P+ + + Q+ L +PF PT +Q+ + +I D++Q M+R+ Sbjct: 240 LSMLKLRADSGSHKALPLQPDTNLLQRFLAALPFQPTGAQQRVVNEIAADLNQSEPMMRL 299 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 +QGDVGSGKTLVA +A A+ G Q +MAP +LA+QH + + + + V + G Sbjct: 300 VQGDVGSGKTLVAALAALHAISQGYQVALMAPTELLAEQHAQAFANWFEPLGLPVAWLAG 359 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 + R ALERIA G+A +++GTHA+FQ + ++ L LVIVDEQHRFGV QRL L +K Sbjct: 360 KLKGKAREAALERIASGEARMVVGTHAIFQSQVAFHHLALVIVDEQHRFGVHQRLTLREK 419 Query: 418 ----ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 PH L+MTATPIPRTL +T+ D+D+S I E P GR PI TV IP +R D+V+E Sbjct: 420 GLKDGCYPHQLIMTATPIPRTLAMTAYADLDVSVIDELPPGRTPITTVAIPDSRRDDVVE 479 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532 R++ S G++AYW+C IEE + ++ + L E +I ++HGRM +K+ Sbjct: 480 RVRQACSNGRQAYWVCTLIEESEVLQCQAAEDTATELAERLPELNIGLVHGRMKADEKQQ 539 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 VM++FK LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C Sbjct: 540 VMNAFKANELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHC 599 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +LL+HPPLSK + +RL VL+ + DGF+IA+ DL+ R GE+LG +Q+G+ IA Sbjct: 600 VLLFHPPLSKTAQSRLGVLRESNDGFVIAQRDLEIRGPGEVLGTRQTGLADLKIADLVRD 659 Query: 653 DSLLEIARKDAKHILTQDP 671 +L+ ++ A+H++ + P Sbjct: 660 AALIPQVQRLAQHLMDRYP 678 >gi|148654135|ref|YP_001281228.1| ATP-dependent DNA helicase RecG [Psychrobacter sp. PRwf-1] gi|148573219|gb|ABQ95278.1| ATP-dependent DNA helicase RecG [Psychrobacter sp. PRwf-1] Length = 747 Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust. Identities = 266/716 (37%), Positives = 399/716 (55%), Gaps = 62/716 (8%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P+ GVG K L ++ +R DLL + P + DR IS++ + + Sbjct: 26 PVQVLAGVGSKIEGQLEQL------GVSRLFDLLLHLPRDYEDRSRLVNISDLQDGQSAL 79 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G ++ + KR +++ D TG I L FF +++ + G ++ + G++K Sbjct: 80 IEGQVT----YVDNKRGGMTVVIEDATGAIQLRFFKVYASLVQTMTL-GTRLRLFGEVKI 134 Query: 132 LKNRIIMVHPHY--IFHNSQDVN------FPLIEAVY----------SLPT----GLSVD 169 + + M HP Y + + VN +P ++ ++ +L T GL + Sbjct: 135 SRYGMQMAHPEYNMVTAGAPVVNTGLQPIYPAVKGLHQNKLRTLVKLALQTVHQQGLPLT 194 Query: 170 LFKKIIVEALSRLPV-LPE---WIEKDLLQKKSFPS-----------IAEAFNIIHNPRK 214 +F + +A++ LP LP + +++ PS + EA +IH P Sbjct: 195 VFDEADWQAVNHLPAPLPTNSYGLPSSAASQQTSPSPNSAPSWQHLTLFEALTLIHTPPM 254 Query: 215 AKDFEW-----------TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQ 263 D T PA +RL +EL A Q+++L RKQ + + + +A+ Sbjct: 255 HTDITLQAAQLEQLKARTHPACQRLIVEELTAHQLSMLYRRKQLHQHKAPKCDGDSPLAE 314 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K+L N+PFS T +Q+ IK+I DM+ MLR++QGDVG+GKTLVA +A A+++G Q Sbjct: 315 KLLANLPFSLTGAQDRVIKEITSDMATSIPMLRLVQGDVGAGKTLVAALAACYALDSGWQ 374 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 +MAP ILA+QH K + + I V + G RR+AL +A + I++GTH Sbjct: 375 VAVMAPTEILAEQHLINFKAWFEPLGIGVGWLAGKQTAKQRREALADVAENEVQIVVGTH 434 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSL 440 ALFQD++ + KL L I+DEQHRFGV+QR+ LT K A PH L+MTATPIPRTL +++ Sbjct: 435 ALFQDAVVFAKLGLAIIDEQHRFGVEQRMALTNKGVANSTPHQLIMTATPIPRTLAMSAY 494 Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500 GD+D S I E P GR PI TV I R DEVIER+ EGK+AYW+CP +++ N Sbjct: 495 GDMDTSIIDELPPGRTPITTVTIDRARRDEVIERIAANCKEGKQAYWVCPLVDDSSTLNA 554 Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560 ++ F L E I ++HG+M +K+ +M +FKN LL+ATTVIEVG+DV +A Sbjct: 555 QAAEATFADLSERLDIRIGMVHGKMKSKEKQEIMAAFKNAELDLLVATTVIEVGVDVPNA 614 Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620 S+++IENAE GL+QLHQLRGRVGRG S C+LLY PLS+ RL+VL+++ DGF+I Sbjct: 615 SLMVIENAERLGLSQLHQLRGRVGRGSTKSFCVLLYQTPLSETGIERLNVLRDSNDGFVI 674 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676 A++DL+ R GE+LG +Q+G + ++ ++LL IA AK ++ D T V Sbjct: 675 AQKDLQLRGPGELLGKRQTGNIGYYVSDLTRDENLLMIASHLAKRLINDDARKTEV 730 >gi|152998385|ref|YP_001343220.1| ATP-dependent DNA helicase RecG [Marinomonas sp. MWYL1] gi|150839309|gb|ABR73285.1| ATP-dependent DNA helicase RecG [Marinomonas sp. MWYL1] Length = 693 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 258/673 (38%), Positives = 400/673 (59%), Gaps = 21/673 (3%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75 +GVG + L+K+ + N + DLLF+ P + DR I + I G Sbjct: 13 LKGVGDAMAEKLAKL----HLNTVQ--DLLFHLPIRYQDRTRVVPIGMLRFGDEAVIEGQ 66 Query: 76 ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 ++ + ++ KRR + D TG + L FF+ K G+++ G+I++ Sbjct: 67 VT-GAEIKMGKRRSLLCRIKDHTGTLCLRFFHFSAAQ-KKQLESGKRVRCFGEIRRGSTG 124 Query: 136 IIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPEWIEK 191 + HP Y I + + +Y L GL+ +++ +AL RL L EW+ Sbjct: 125 FEIYHPEYKVIGEDETQEETAQLTPIYPLTDGLTQTKIRQLCEQALERLTPYNLQEWLPD 184 Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEW----TSPARERLAYDELLAGQIALLLMRKQF 247 ++ + S P +++A + +H+P + + E T PA+ RL+++EL+A Q++L+ R + Sbjct: 185 EIRSQFSLPPLSDAIHFLHHPSREANLELLRSGTHPAQYRLSFEELMAHQLSLIGKRMKA 244 Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 K++ I + G+++Q++L+ +PFSPT +Q+ ++IL D++ + MLR++QGDVGSGKT Sbjct: 245 KQDAAIKVQAAGELSQRLLQQLPFSPTNAQQRVFQEILNDLATGHPMLRLVQGDVGSGKT 304 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 LVA +A A+ V+AG Q IMAP ILA+QHY ++ + + V + G + R K Sbjct: 305 LVAALAAASVVQAGYQVAIMAPTEILAEQHYINFTQWFEPLGLKVAWMIGKLKGKTREKE 364 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----APHV 423 L IA G A II+GTHALFQD++++ +L L I+DEQHRFGV QR+ L +K PH Sbjct: 365 LADIASGAAQIIVGTHALFQDTVEFDRLALAIIDEQHRFGVHQRMALREKGMKHGFQPHQ 424 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL +++ D+D S I E P GR P+ T+++ R EVI+R+K EGK Sbjct: 425 LIMTATPIPRTLAMSAYADLDCSIIDELPPGRTPVNTIVVSDQRRQEVIDRVKSACEEGK 484 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542 +AYW+C IEE + ++ + L E + SI ++HGR+ +K +M FK G Sbjct: 485 QAYWVCTLIEESEALQCQAAEDTAILLQEQLGNLSIGLVHGRLKAQEKADIMARFKAGEI 544 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 +LL+ATTVIEVG+DV ++S+++IEN E GLAQLHQLRGRVGRG+ S C+LLY PL + Sbjct: 545 QLLVATTVIEVGVDVPNSSLMVIENPERLGLAQLHQLRGRVGRGQTASHCVLLYKAPLGQ 604 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662 RLS ++ T DGF IAE+DL+ R GE+LG +Q+G+ +F +A + +LL+ +K Sbjct: 605 QGKERLSTMRETSDGFKIAEKDLELRGPGELLGTRQTGLWEFKVADLQRDKNLLDDVQKA 664 Query: 663 AKHILTQDPDLTS 675 A + ++ PD S Sbjct: 665 AALLHSRYPDRVS 677 >gi|299768653|ref|YP_003730679.1| ATP-dependent DNA helicase RecG [Acinetobacter sp. DR1] gi|298698741|gb|ADI89306.1| ATP-dependent DNA helicase RecG [Acinetobacter sp. DR1] Length = 681 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 264/668 (39%), Positives = 395/668 (59%), Gaps = 23/668 (3%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75 +GVG + L K+ N DLLF+ P + DR ++++ R + G Sbjct: 7 LQGVGSASAALLEKL------NIFTTDDLLFHLPRDYEDRSTIIAMNQLVVGRSYLLEGE 60 Query: 76 ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 + + F KR+ L+ D G++TL F Y + L + G ++ + G+++ Sbjct: 61 V-RSIDFPPGKRKSMAALVQDEFGKVTLRF-YHIYKNLTDKIKPGHRLRIFGEVRVGARG 118 Query: 136 IIMVHPH-YIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDL 193 + M HP + H + + A+Y GL+ ++ + +AL LPE + K Sbjct: 119 LEMYHPEIQLIHEHTPLPKTQLTAIYPSTDGLTQPKLREYVKQALKHHSDALPELLPKKY 178 Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKK 249 + + EA IH P + + + PA++RL ++EL+A QI+LL R+ + + Sbjct: 179 TNGYA---LKEALYYIHEPPIDANMLQLAQGSHPAQQRLIFEELVAHQISLL-NRRAYIR 234 Query: 250 EIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 +I P KI A+K+L +PF T +Q+ K+IL D+ Q MLR++QGDVG+GKTL Sbjct: 235 QIASPAFSSSKILAKKLLEALPFQMTNAQKRVSKEILNDLKQHQPMLRLVQGDVGAGKTL 294 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VA +A A+EA Q +MAP ILA+QHY K++ + I V ++G R +A Sbjct: 295 VAAVAACHALEADWQVALMAPTEILAEQHYLNFKRWFEPLGITVAWLSGKQKGKARAQAE 354 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLL 425 ++I G A +I+GTHALFQD++ + KL LVI+DEQHRFGV QRL L K PH L+ Sbjct: 355 QQIKEGHAELIVGTHALFQDNVGFAKLGLVIIDEQHRFGVDQRLALRNKGAEQFTPHQLV 414 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV++R+ +GK+A Sbjct: 415 MTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLQRIASNCRDGKQA 474 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKL 544 YW+C +E+ + + ++ + + E F +I ++HG+M +K+SVM +FKN +L Sbjct: 475 YWVCTLVEQSETLDAQAAEATYQEMKERFPELNIGLVHGKMKADEKQSVMQAFKNNELQL 534 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 LIATTVIEVG+DV ++SI++IENAE GL+QLHQLRGRVGRG + S C+LLY PLS+N Sbjct: 535 LIATTVIEVGVDVPNSSIMVIENAERLGLSQLHQLRGRVGRGAQASFCVLLYKTPLSQNG 594 Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 RLS+L+ + DGF+IAE+DL+ R GE+LG KQ+G F +A+ E D LL A A+ Sbjct: 595 QERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLERDDHLLSQAHYVAQ 654 Query: 665 HILTQDPD 672 +L P+ Sbjct: 655 QVLKDYPE 662 >gi|146280531|ref|YP_001170684.1| ATP-dependent DNA helicase RecG [Pseudomonas stutzeri A1501] gi|145568736|gb|ABP77842.1| ATP-dependent DNA helicase RecG [Pseudomonas stutzeri A1501] Length = 690 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 259/676 (38%), Positives = 393/676 (58%), Gaps = 21/676 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +GVG + L+++ ET D+LF+ P + DR I + + Sbjct: 8 PVTALKGVGAALAEKLARV-----GLET-LQDVLFHLPLRYQDRTRVVPIGSLRPGQDAV 61 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G ++ + + +RR + L DG+G ++L FY ++ K G ++ G+ + Sbjct: 62 IEGIVA-GADIVMGRRRSLLVRLQDGSGTLSL-RFYHFSQAQKEAMKRGTQLRCYGEARP 119 Query: 132 LKNRIIMVHPHYIFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPEW 188 + + + HP Y + + +Y GL+ + + +ALSRL LP+W Sbjct: 120 GASGLEIYHPEYRALTGEPAPVEQTLTPIYPTTEGLTQQRLRNLSEQALSRLGPHSLPDW 179 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE----RLAYDELLAGQIALLLMR 244 + +L ++ + +A +H P D E + R RLA++ELL Q++L +R Sbjct: 180 LPAELAREYRLGPLDQALRYLHRPPPDADLEELAEGRHWAQHRLAFEELLTHQLSLQRLR 239 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 ++ + + + ++ Q+ L N+ FSPT +Q+ +I D++Q MLR++QGDVG+ Sbjct: 240 ERVRAQQAPQLPPAKRLPQRFLANLGFSPTGAQQRVGAEIAYDLAQDEPMLRLVQGDVGA 299 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKT+VA +A A+EAG Q +MAP ILA+QH+ K+ + I V + G + R Sbjct: 300 GKTVVAALAALQALEAGYQVALMAPTEILAEQHFLNFSKWLEPLGIEVAWLAGKLKGKAR 359 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----A 420 ALE+IA G +++GTHALFQD + + +L LVI+DEQHRFGVQQRL L QK Sbjct: 360 AAALEQIAGG-CPMVVGTHALFQDEVAFKRLALVIIDEQHRFGVQQRLALRQKGIDGRLC 418 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 PH L+MTATPIPRTL +++ D+D S + E P GR P+ T++I +R EVIER+++ + Sbjct: 419 PHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTLVIADSRRLEVIERVRIACN 478 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539 EG++AYW+C IEE +E ++ F L + +IHGRM +K +VM+ FK Sbjct: 479 EGRQAYWVCTLIEESEELTCQAAETTFEDLSAALVGLRVGLIHGRMKPAEKAAVMEQFKR 538 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLYHPP Sbjct: 539 GELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHPP 598 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 LS+ RL++++ T DGFLIAE+DL+ R GE+LG +Q+G+ +F +A LL Sbjct: 599 LSQLGRERLAIMRETCDGFLIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDAELLPAV 658 Query: 660 RKDAKHILTQDPDLTS 675 R A+ +LT+ P S Sbjct: 659 RDAAQELLTRWPQHVS 674 >gi|255319827|ref|ZP_05361032.1| ATP-dependent DNA helicase RecG [Acinetobacter radioresistens SK82] gi|262380359|ref|ZP_06073513.1| ATP-dependent DNA helicase RecG [Acinetobacter radioresistens SH164] gi|255303146|gb|EET82358.1| ATP-dependent DNA helicase RecG [Acinetobacter radioresistens SK82] gi|262297805|gb|EEY85720.1| ATP-dependent DNA helicase RecG [Acinetobacter radioresistens SH164] Length = 681 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 271/678 (39%), Positives = 398/678 (58%), Gaps = 33/678 (4%) Query: 10 FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69 A + +GVG + L K+ N DLLF+ P + DR ++++ R Sbjct: 1 MATVHQLQGVGTASAALLEKL------NIFTTDDLLFHLPRDYEDRSTIIPMNQLVVGRS 54 Query: 70 VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G +S F KR+ +LL D G++TL F Y + L + G ++ V G++ Sbjct: 55 YLLEGTVSS-IDFPPGKRKSMAVLLEDDFGKVTLRF-YHIYKALTDKMRSGNRLRVFGEV 112 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSR----LP 183 + + + HP I S P + A+Y GL+ ++ + +AL + LP Sbjct: 113 RVGARGLELYHPE-IQQISAQTALPKTRLTAIYPSTEGLTQAKLREYVRQALEQHSENLP 171 Query: 184 -VLPEWIEKDLLQKKSFPSIAEAFNIIHNP----RKAKDFEWTSPARERLAYDELLAGQI 238 +LPE ++ EA IH P + + + PA++RL ++EL+A QI Sbjct: 172 ELLPEKFTNGY-------ALKEALEYIHEPPIDANMQQLMQGSHPAQQRLIFEELVAHQI 224 Query: 239 ALLLMRKQFKKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 +LL R+ + +EI P I A+K+L N+PF+ T +Q K+I+ D+ Q MLR+ Sbjct: 225 SLL-TRRAYIREIEAPAFEPSTILAKKLLANLPFNMTGAQRRVSKEIMIDLKQHQPMLRL 283 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 +QGDVG+GKTLVA +A A+EAG Q +MAP ILA+QHY K++ + I V ++G Sbjct: 284 VQGDVGAGKTLVAAVAACHALEAGWQVALMAPTEILAEQHYLNFKRWFEPLGIQVAWLSG 343 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 R +A I G A +++GTHALFQ+++++ +L LVI+DEQHRFGV QRL L K Sbjct: 344 KQKGKARTQAEAIIRGGLAQLVVGTHALFQENVEFARLGLVIIDEQHRFGVDQRLALRNK 403 Query: 418 AT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 PH L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV++R Sbjct: 404 GAEQMTPHQLVMTATPIPRTLAMSAYGDLDTSVIDELPPGRTPIQTVTIPLDRREEVLQR 463 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533 + EGK+AYW+C +E+ + + ++ + + E F S +I ++HG+M +K+SV Sbjct: 464 IATNCQEGKQAYWVCTLVEQSETLDAQAAEATYAEIKERFPSLNIGLVHGKMKADEKQSV 523 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M FKN +LLIATTVIEVG+DV +ASI++IENAE GL+QLHQLRGRVGRG + S C Sbjct: 524 MQKFKNNELQLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCA 583 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 LLY PLS+N RLS+L+ + DGF+IAE+DL+ R GE+LG KQ+G F +A+ E D Sbjct: 584 LLYKTPLSQNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVAKLERDD 643 Query: 654 SLLEIARKDAKHILTQDP 671 LL A A+ +L P Sbjct: 644 HLLTEAHYVAEQVLKDYP 661 >gi|167036344|ref|YP_001671575.1| ATP-dependent DNA helicase RecG [Pseudomonas putida GB-1] gi|166862832|gb|ABZ01240.1| ATP-dependent DNA helicase RecG [Pseudomonas putida GB-1] Length = 692 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 255/678 (37%), Positives = 388/678 (57%), Gaps = 23/678 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +GVG+ + L+K+ G N D+LF+ P + DR I ++ + Sbjct: 8 PVTVLKGVGEAMAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRVVPIGQLRPGQDAV 61 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G +S S + KRR + L DG+G +TL FY + K G + G+ + Sbjct: 62 IEGVVS-GSDVTMGKRRSLVVRLGDGSGVLTL-RFYHFSNAQKEGLKRGTHLRCYGEARP 119 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLP--VLP 186 + + + HP Y N + P+ + +Y GL+ + + ++L L LP Sbjct: 120 GASGLEIYHPEYRALNGDEPPPPVEQTLTPIYPSTEGLTQQRLRLLCQQSLGLLGPRSLP 179 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242 +W+ +L + + EA +HNP D E A+ RLA++ELL Q++ Sbjct: 180 DWLPDELARDYQLAPLDEAIRYLHNPPADADLDELAEGQHWAQHRLAFEELLTHQLSQQR 239 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R+ + + ++ + L N+ F PT +Q+ +I D+SQ M+R++QGDV Sbjct: 240 LRESLRSLRAPVLPKATRLQAQYLANLGFQPTGAQQRVANEIAYDLSQHAPMMRLVQGDV 299 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 G+GKT+VA +A +EAG Q +MAP ILA+QHY K++ + I V + G + Sbjct: 300 GAGKTVVAALAALQGLEAGYQVALMAPTEILAEQHYITFKRWLEPLGIEVAWLAGKLKGK 359 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R +LE+IA+G A +++GTHALFQ+ +++ L L I+DEQHRFGVQQRL L +K A Sbjct: 360 ARAASLEQIANG-APMVVGTHALFQEEVKFKHLALAIIDEQHRFGVQQRLALRKKGVAGE 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH L+MTATPIPRTL +++ D+D S + E P GR P+ TV++ +R EV+ER++ Sbjct: 419 LCPHQLIMTATPIPRTLAMSAYADLDTSVLDELPPGRTPVNTVLVADSRRFEVVERVRAA 478 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 +EG++AYW+C IEE +E ++ + L + +IHGRM +K +M F Sbjct: 479 CAEGRQAYWVCTLIEESEELTCQAAESTYEELGSALGELRVGLIHGRMKPAEKAEIMAQF 538 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 K G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG +S C+LLYH Sbjct: 539 KAGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYH 598 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PPLS+ RL +++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A LL Sbjct: 599 PPLSQIGRERLGIMRETNDGFIIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLP 658 Query: 658 IARKDAKHILTQDPDLTS 675 R A+ ++ + PD S Sbjct: 659 AVRDAAQALVARWPDHVS 676 >gi|197336391|ref|YP_002157245.1| ATP-dependent DNA helicase RecG [Vibrio fischeri MJ11] gi|197317881|gb|ACH67328.1| ATP-dependent DNA helicase RecG [Vibrio fischeri MJ11] Length = 693 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 261/672 (38%), Positives = 398/672 (59%), Gaps = 30/672 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG K + L KI DLLF+ P + DR ++ + Sbjct: 10 PLTSLAGVGAKVAEKLEKI------GLVSIQDLLFHLPLRYEDRTRVYPMARVHSGLFAA 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + Q KR+ + ++DG G ITL FF M KN F EG+ + G+IK+ Sbjct: 64 VQGKVMS-CDMQFGKRKMLLVKISDGNGTITLRFFNFNAGM-KNSFSEGKLVHAYGEIKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL-IEA----VYSLPTGLSVDLFKKIIVEALSRL--PV 184 + + +VHP Y FH PL IEA VY GL + + + +AL L Sbjct: 122 GGSGLEIVHPEYQFHVPSQ---PLEIEASLTPVYPTTDGLRQNTLRSLTDQALELLDKAA 178 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIAL 240 + E + + L + ++ +A +IIH P + + E PA++RL +ELLA +++ Sbjct: 179 VTELLPQGLYNNQI--TLNQALHIIHRPDPSINLDAFDEGKHPAQQRLIMEELLAQNLSM 236 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L +R + ++E +P+ + QK+L +PF+PT +Q+ + +I QD+++ + M+R++QG Sbjct: 237 LSVRSKGQQEDALPLATLTNLKQKLLAQLPFTPTNAQQRVVAEIEQDLAKPHPMMRLVQG 296 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKTLVA +A A+E G Q +MAP +LA+QH + ++ I V + G + Sbjct: 297 DVGSGKTLVAALAAVQAIEHGYQVALMAPTELLAEQHAANFAHWFESMGITVGWLAGKLT 356 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK--- 417 + K LERI G+A +I+GTHALFQ +++++ L LVI+DEQHRFGV QRL+L +K Sbjct: 357 GKAKEKELERITSGEAKMIVGTHALFQQNVEFHHLALVIIDEQHRFGVDQRLELREKGQK 416 Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+T+ +P R DE++ +++ Sbjct: 417 NGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTIAVPDTRRDEIVNKVR 476 Query: 477 -VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 +++G++AYW+C I++ + ++ + +L +I ++HGRM +K+ +M Sbjct: 477 SACMNDGRQAYWVCTLIDDSEVLEAQAASDTAEALRLQLPELNIGLVHGRMKPKEKQQIM 536 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 FK G LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C+L Sbjct: 537 QEFKEGNLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVL 596 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 LYH PLSK + RLSVL+ + DGF+IA+ DL+ R GE+LG KQ+G+ F IA Sbjct: 597 LYHSPLSKTAQKRLSVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQH 656 Query: 655 LLEIARKDAKHI 666 L+ ++ A+H+ Sbjct: 657 LIPEVQRIARHL 668 >gi|327478768|gb|AEA82078.1| ATP-dependent DNA helicase RecG [Pseudomonas stutzeri DSM 4166] Length = 690 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 259/676 (38%), Positives = 393/676 (58%), Gaps = 21/676 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +GVG + L+++ ET D+LF+ P + DR I + + Sbjct: 8 PVTALKGVGAALAEKLARV-----GLET-LQDVLFHLPLRYQDRTRVVPIGSLRPGQDAV 61 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G ++ + + +RR + L DG+G ++L FY ++ K G ++ G+ + Sbjct: 62 IEGIVA-GADIVMGRRRSLLVRLQDGSGTLSL-RFYHFSQAQKEAMKRGTQLRCYGEARP 119 Query: 132 LKNRIIMVHPHYIFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPEW 188 + + + HP Y + + +Y GL+ + + +ALSRL LP+W Sbjct: 120 GASGLEIYHPEYRALTGEPAPVEQTLTPIYPTTEGLTQQRLRNLSEQALSRLGPHSLPDW 179 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE----RLAYDELLAGQIALLLMR 244 + +L ++ + +A +H P D E + R RLA++ELL Q++L +R Sbjct: 180 LPAELAREYRLGPLDQALRYLHRPPPDADLEELAEGRHWAQHRLAFEELLTHQLSLQRLR 239 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 ++ + + + ++ Q+ L N+ FSPT +Q+ +I D++Q MLR++QGDVG+ Sbjct: 240 ERVRAQQAPQLPPAKRLPQRFLANLGFSPTGAQQRVGAEIAYDLAQDEPMLRLVQGDVGA 299 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKT+VA +A A+EAG Q +MAP ILA+QH+ K+ + I V + G + R Sbjct: 300 GKTVVAALAALQALEAGYQVALMAPTEILAEQHFLNFSKWLEPLGIEVAWLAGKLKGKAR 359 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----A 420 ALE+IA G +++GTHALFQD + + +L LVI+DEQHRFGVQQRL L QK Sbjct: 360 AAALEQIAGG-CPMVVGTHALFQDEVVFKRLALVIIDEQHRFGVQQRLALRQKGIDGRLC 418 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 PH L+MTATPIPRTL +++ D+D S + E P GR P+ T++I +R EVIER+++ + Sbjct: 419 PHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTLVIADSRRLEVIERVRIACN 478 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539 EG++AYW+C IEE +E ++ F L + +IHGRM +K +VM+ FK Sbjct: 479 EGRQAYWVCTLIEESEELTCQAAETTFEDLSAALVGLRVGLIHGRMKPAEKAAVMEQFKR 538 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLYHPP Sbjct: 539 GELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHPP 598 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 LS+ RL++++ T DGFLIAE+DL+ R GE+LG +Q+G+ +F +A LL Sbjct: 599 LSQLGRERLAIMRETCDGFLIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDAELLPAV 658 Query: 660 RKDAKHILTQDPDLTS 675 R A+ +LT+ P S Sbjct: 659 RDAAQELLTRWPQHVS 674 >gi|254281548|ref|ZP_04956516.1| ATP-dependent DNA helicase RecG [gamma proteobacterium NOR51-B] gi|219677751|gb|EED34100.1| ATP-dependent DNA helicase RecG [gamma proteobacterium NOR51-B] Length = 715 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 262/677 (38%), Positives = 395/677 (58%), Gaps = 26/677 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRPKISEISEE 67 L + ++ RGVG K + K+ + G R I DLLFY P + DR I+ + + Sbjct: 33 LNSSITRLRGVGPKLA---EKLADLG----IRAIEDLLFYFPIRYEDRTRVTPIAALRDG 85 Query: 68 RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 + ++ +S +RR + DG+G ++L F+ + LK F G I + G Sbjct: 86 VNAVVVAEVTL-ASIVPGRRRALVAKVADGSGVMSLRLFHFRNAQLKQ-FSPGAPIMLYG 143 Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187 + ++ + MVHP Y + + VY GL L++++ +AL+ VL + Sbjct: 144 QPRRGSGAVEMVHPEYRIGSETPELESHLTPVYPTIEGLGQALWRRLCGQALT---VLDK 200 Query: 188 WIEKDLLQ---KKSFPSIAEAFNIIHNP----RKAKDFEWTSPARERLAYDELLAGQIAL 240 DLL SF + EA +H+P R E PA+ RLA +EL+A Q+++ Sbjct: 201 EPPPDLLSPYYSGSFGWV-EALRFLHHPPPDARLESIIECDHPAQLRLALEELVAHQLSM 259 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 +R++ +++ P+ G + +++L ++PF PT +QE +IL D+S+ MLR++QG Sbjct: 260 RQLREKEREQPAPPLRGSGALRRQLLASLPFQPTAAQERVSSEILDDLSRPTPMLRLVQG 319 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKTLVA IA A++AG Q +MAP +LA+QH + K + I V +TG + Sbjct: 320 DVGSGKTLVAAIAALEAIDAGFQVALMAPTELLAEQHLQNFKTWFSPLGIEVGWLTGRVK 379 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 R+ L + G + I++GTHALFQD + + +L LVIVDEQHRFGV QRL LT+K Sbjct: 380 GKQRQAILAAVTAGDSKILVGTHALFQDDVSFARLGLVIVDEQHRFGVHQRLSLTEKGGN 439 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 PH L++TATPIPRTL + + D+D S I E P GR P++T ++ +R VIER+ V Sbjct: 440 SGHPHQLVLTATPIPRTLSMVAYADLDCSIIDELPPGRTPVQTTLLDNSRRAAVIERVGV 499 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMD 535 EG++AYW+C I+E ++ L T + +IHGR+ +KESVM Sbjct: 500 ACGEGRQAYWVCTVIDESDTLTVQAAEATAGHLTGALPDTVRVGLIHGRLPGSEKESVMA 559 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG + S C+LL Sbjct: 560 AFKRGDIDLLVATTVIEVGVDVANASLMIIENPERLGLAQLHQLRGRVGRGADKSHCLLL 619 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLS+ + RL+V++++ DGF IAE+DL+ R GE+LG +Q+G+ +F +A+ H++L Sbjct: 620 YQTPLSQTARARLNVMRDSNDGFFIAEQDLRLRGPGELLGTRQTGLAQFRVAKLPEHEAL 679 Query: 656 LEIARKDAKHILTQDPD 672 L+ + + I + P+ Sbjct: 680 LDQVQVISDRIAAESPE 696 >gi|162147668|ref|YP_001602129.1| ATP-dependent DNA helicase recG [Gluconacetobacter diazotrophicus PAl 5] gi|161786245|emb|CAP55827.1| putative ATP-dependent DNA helicase recG [Gluconacetobacter diazotrophicus PAl 5] Length = 725 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 266/725 (36%), Positives = 409/725 (56%), Gaps = 42/725 (5%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 R L PL APL + GVG + L++ + R IDLLF+ P S +DR P++ Sbjct: 17 RDDNLGPLLAPLGSLPGVGPALAKLLARAVRG-----QRVIDLLFHLPESVVDRGLSPQL 71 Query: 62 SEISEE------RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF----YRKTE 111 S E R + ++ Q++ RR D T +FF R+T Sbjct: 72 SRRPESVVDHRYRPSLRNAVPGRGTTMQVRVRR------FDAPARGTRVFFSPLEARRTG 125 Query: 112 MLKNVFFE---------GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162 + + VF G + V+G + +R+ M HP +I P +E V+ L Sbjct: 126 VGELVFLSPTQARQMRVGATVPVSGTLDAFGDRLQMAHPDHIVPGGDIDRIPALEPVWPL 185 Query: 163 PTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF---- 218 GL + + +A R P LPEW++ L+ ++ +P A +H P D Sbjct: 186 TAGLFPRHVRAALHQAFLRFPPLPEWLDSVLVARRHWPDFETALRQLHCPEAFPDLLRGD 245 Query: 219 EWTSP---ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275 W + AR+RLA DELLA Q+A+ R++ + G I G + + L ++PT Sbjct: 246 AWQAAGERARQRLACDELLAEQVAMSEARRRNRNRPGRSIVGTGTLRAEALARFGYTPTG 305 Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 +Q A+++I D++ M+R+LQGDVG+GKTLVA++AM AA EAG QAV+MAP ILA+ Sbjct: 306 AQHRAVREIDSDLAASYPMMRLLQGDVGAGKTLVAMLAMLAAAEAGHQAVLMAPTEILAR 365 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 QH +K + V ++G++ RR LE IA G+A +++GTHALFQD + + L Sbjct: 366 QHLATFQKLAP---VPVAFLSGSVKGRARRTVLEDIASGRAPLVVGTHALFQDKVVFDDL 422 Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 L ++DEQHRFGV+QRL L +K +L+MTATPIPRTL+LT G++ +S++ EKPAGR Sbjct: 423 ALAVIDEQHRFGVEQRLLLGEKGDRADILVMTATPIPRTLLLTQWGEMQVSRLNEKPAGR 482 Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 P++T + + + +V++ + ++ G +W+CP + E + + + RF +L E F Sbjct: 483 LPVRTSLHAMASLGDVLDGIGRAIARGALVFWVCPLVTESEAMDLAAAEARFAALTERFG 542 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + + HG+ +E+ + F G K+L+ATTVIEVG+D+ A+I++IE+AE FGLAQ Sbjct: 543 PIVGLAHGQQDIAVREAAIADFAAGRTKILVATTVIEVGVDIPAATIMVIEHAERFGLAQ 602 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG + S C+LL+ L + RL++L++TEDGFLIA+ED + R G++ G Sbjct: 603 LHQLRGRVGRGRDESFCLLLHDDALGSTARRRLALLRDTEDGFLIADEDFRLRGGGDVTG 662 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695 +QSG+P +A D LL IA +DA+ + + + R +I LL L+ ++A + Sbjct: 663 RRQSGLPDLRLATGARLDLLLTIAAQDAQRV--AEGGASESRRNAIAQLLELFDRHDAAR 720 Query: 696 FIRAG 700 +R+G Sbjct: 721 ILRSG 725 >gi|262377324|ref|ZP_06070548.1| ATP-dependent DNA helicase RecG [Acinetobacter lwoffii SH145] gi|262307777|gb|EEY88916.1| ATP-dependent DNA helicase RecG [Acinetobacter lwoffii SH145] Length = 681 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 263/675 (38%), Positives = 403/675 (59%), Gaps = 25/675 (3%) Query: 10 FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69 A + +GVG + L K+ N N + DLLF+ P + DR ++++S R Sbjct: 1 MAAVHQLQGVGNAAASLLEKL-NIFNTD-----DLLFHLPRDYEDRSTIIPMNQLSVGRS 54 Query: 70 VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G I + F KR+ +LL+D G++TL F++ + G ++ + G++ Sbjct: 55 YLLEG-IVKGVDFPPGKRKSMAVLLDDDFGKVTLRFYHIYKGITDRCKL-GNRLRIFGEV 112 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIE--AVYSLPTGLSVDLFKKIIVEALSRLPV-LP 186 + + M HP ++D P + A+Y GL+ + I +AL++ LP Sbjct: 113 RVGARGLEMYHPELQV-ITEDTPLPQTQLTAIYPATEGLTQPKIRDYIQQALAQYSDHLP 171 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242 E + + ++ +A IH+P + + + PA++RL ++EL+A QI+LL Sbjct: 172 ELLPAKF---SNGYALKQALEYIHHPPVNANMLQLAQGSHPAQQRLIFEELVAHQISLL- 227 Query: 243 MRKQFKKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 R+ F +++ P K A+++L ++ F T +Q+ ++I+QD+ MLR++QGD Sbjct: 228 TRRAFIQQVEAPSFAPSKTYAKQLLASLAFEMTGAQKRVSREIVQDLKSNKPMLRLVQGD 287 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVA +A A+E G Q +MAP ILA+QHY K++ + + V ++G Sbjct: 288 VGAGKTLVAGVAACHALEEGWQVALMAPTEILAEQHYLNFKRWFEPLGLNVAWLSGKQKG 347 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA--- 418 R A + I G AH++IGTHALFQ+++++ KL LVI+DEQHRFGV QRL L K Sbjct: 348 KARAAAEQVIRDGSAHLVIGTHALFQENVEFAKLGLVIIDEQHRFGVDQRLALRNKGLDG 407 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 +PH L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV++R+ Sbjct: 408 MSPHQLVMTATPIPRTLAMSAYGDLDTSVIDELPPGRTPIQTVTIPLDRREEVLQRIASN 467 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 +EGK+AYW+C +E+ + + ++ F + E F + +I ++HG+M +K++VM F Sbjct: 468 CAEGKQAYWVCTLVEQSETLDAQAAEATFAEIRERFPALNIGLVHGKMKADEKQAVMQQF 527 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 KN +LLIATTVIEVG+DV +ASI++IENAE GL+QLHQLRGRVGRG + S C LLY Sbjct: 528 KNNELQLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCALLYK 587 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PLS+N RL +++ T DGF+IAE+DL+ R GE+LG KQ+G F +A+ E D LL Sbjct: 588 HPLSQNCQERLRIMRETNDGFMIAEKDLELRGPGELLGTKQTGDMNFRVAKLERDDHLLN 647 Query: 658 IARKDAKHILTQDPD 672 A A+ +L PD Sbjct: 648 QAHYVAQQMLKDYPD 662 >gi|315127929|ref|YP_004069932.1| ATP-dependent DNA helicase [Pseudoalteromonas sp. SM9913] gi|315016442|gb|ADT69780.1| ATP-dependent DNA helicase [Pseudoalteromonas sp. SM9913] Length = 673 Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust. Identities = 262/650 (40%), Positives = 379/650 (58%), Gaps = 24/650 (3%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 T D+LF+ P + DR ISE++ VT+ I + S KRR +NDGT Sbjct: 11 TTVQDMLFHLPLRYEDRTRIYAISELTAHSHVTVQATI-ETSQITFGKRRMLVCQINDGT 69 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLI 156 G +TL FF T KN F G+ I G+I++ + M HP Y ++ Q + Sbjct: 70 GRLTLRFF-NFTAAQKNAFSAGKIIRCFGEIRRGRVGFEMSHPEYSISDTFEQQPTSSTL 128 Query: 157 EAVYSLPTGLSVDLFKKIIVEALSR--LPVLPEWIEKDLLQKKSFPS---IAEAFNIIHN 211 VYS GL K++ + ALS + +L ++ ++LL ++ PS +++A ++H Sbjct: 129 TPVYSTTEGL-----KQLSIRALSEQAIELLQKYAVEELLPQQWQPSQLPLSDALLLLHR 183 Query: 212 PRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267 P D + T PA++RL ++ELLA ++LL +R+Q ++ I + + + L Sbjct: 184 PPNDVDIIALEQGTHPAQQRLVFEELLAQNLSLLKVREQGQQVKAIALEPTNPLEAQFLA 243 Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 +PF+PT +Q + +I DM M+R++QGDVGSGKTLVA ++ A+ G Q +M Sbjct: 244 QLPFAPTNAQSRVVSEIKTDMQHAYPMMRLVQGDVGSGKTLVAALSALTAIAQGYQVALM 303 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 AP IL++QH + +N I V + G R L IA G+A +I+GTHALFQ Sbjct: 304 APTEILSEQHGINFSSWFENLGISVAWLGGKTKGKERVNTLAMIASGEAQMIVGTHALFQ 363 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----TAPHVLLMTATPIPRTLVLTSLGDI 443 D +++ L+L+I+DEQHRFGV QRL L +K PH L+MTATPIPRTL +T+ D+ Sbjct: 364 DEVKFNNLVLIIIDEQHRFGVHQRLSLREKGRFGDCYPHQLVMTATPIPRTLAMTAYADL 423 Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE-GKKAYWICPQIEEKKESNFRS 502 + S I E P GR PI TV IP R D++I R+K+ +E G++ YW+C I+E + ++ Sbjct: 424 ETSVIDELPPGRTPITTVAIPDTRRDDIISRVKLACNEQGRQVYWVCTLIDESEVLQCQA 483 Query: 503 VVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 + L E +I ++HGRM +K+++M FK G +L+ATTVIEVG+DV +AS Sbjct: 484 AEDSALQLKEALPELNIGLVHGRMKATEKQAIMSEFKTGNIHVLVATTVIEVGVDVPNAS 543 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621 +IIIEN E GLAQLHQLRGRVGRG S C+LLYH PLS + RL VL+++ DGF+IA Sbjct: 544 LIIIENPERLGLAQLHQLRGRVGRGATASHCVLLYHAPLSHTAQKRLGVLRDSNDGFVIA 603 Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671 E DL+ R GE+LG KQ+G+ +F IA L R A+ +L Q P Sbjct: 604 ERDLEIRGPGEVLGTKQTGLAEFKIADLTRDKQTLNQVRPIAQQMLKQYP 653 >gi|77461780|ref|YP_351287.1| ATP-dependent DNA helicase RecG [Pseudomonas fluorescens Pf0-1] gi|77385783|gb|ABA77296.1| ATP-dependent DNA helicase [Pseudomonas fluorescens Pf0-1] Length = 691 Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust. Identities = 270/697 (38%), Positives = 399/697 (57%), Gaps = 32/697 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 ++ +GVG+ + L+K+ G N D+LF+ P + DR I + + + Sbjct: 9 VTALKGVGEAMAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRVVPIGALRPGQDAVV 62 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G +S + + +RR + L DGTG ++L FY + K G +I G+ + Sbjct: 63 EGTVS-GADVVMGRRRSLVVRLQDGTGGLSL-RFYHFSNAQKEGLKRGTRIRCYGEARPG 120 Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187 + + + HP Y N D P+ E VY L GL+ +++ ++ L+ L LP+ Sbjct: 121 ASGLEIYHPEYRAING-DEPPPVDETLTPVYPLTEGLTQARLRQLCMQTLTLLKPATLPD 179 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIAL 240 W+ +L + +A+A +HNP D + W A+ RLA++ELL Q++ Sbjct: 180 WLPTELARDYQLAPLADAIRYLHNPPADADVDELALGHHW---AQHRLAFEELLTHQLSQ 236 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 +R+ + + K+ K L N+ F+PT +Q+ +I D+SQ MLR++QG Sbjct: 237 QRLRESMRSLRAPAMPKATKLPAKYLANLGFNPTGAQQRVGNEIAYDLSQHEPMLRLIQG 296 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVG+GKT+VA +A A+EAG Q +MAP ILA+QH+ K++ + I V + G + Sbjct: 297 DVGAGKTVVAALAALQALEAGYQVALMAPTEILAEQHFITFKRWLEPLGIDVAWLAGKLK 356 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 +R ALE+IA G +++GTHALFQD +Q+ L LVI+DEQHRFGVQQRL L QK Sbjct: 357 GKNRVAALEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRQKGVG 415 Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PH L+MTATPIPRTL +++ D+D S + E P GR P+ TV++ R EVIER++ Sbjct: 416 GRMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVTDTRRVEVIERVR 475 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +EG++AYW+C IEE +E ++ F L + +IHGRM +K +VM Sbjct: 476 SACAEGRQAYWVCTLIEESEELTCQAAETTFEDLTAALGELKVGLIHGRMKPAEKAAVMA 535 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG +S C+LL Sbjct: 536 EFKAGNLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLL 595 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 YHPPLS+ RL +++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A L Sbjct: 596 YHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADL 655 Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692 L R A+ +L + P T V R L + QY + Sbjct: 656 LPAVRDAAQALLERWP--THVSPLLDRWLRHGQQYGQ 690 >gi|50086230|ref|YP_047740.1| ATP-dependent DNA helicase RecG [Acinetobacter sp. ADP1] gi|49532206|emb|CAG69918.1| ATP-dependent DNA helicase [Acinetobacter sp. ADP1] Length = 686 Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust. Identities = 265/663 (39%), Positives = 393/663 (59%), Gaps = 23/663 (3%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75 +GVG + L K+ N DLLF+ P + DR ++++ R + G Sbjct: 12 LQGVGTAAASLLEKL------NIFTTDDLLFHLPRDYEDRSTVIAMNQLMVGRSYLLEGE 65 Query: 76 ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 I + F KR+ LL D G++TL F Y + L + G+++ V G+++ Sbjct: 66 I-KSLDFPAGKRKSVAALLQDDCGKVTLRF-YHIYKGLTDKLKSGQRLRVFGEVRVGARG 123 Query: 136 IIMVHPH-YIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDL 193 + M HP + H+ + + A+Y GL+ ++ I +AL + LPE + K Sbjct: 124 LEMYHPEIQVIHDYTPLPKTQLTAIYPSTEGLTQPKLREYIKQALKQYSDNLPELLPK-- 181 Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKK 249 Q + + EA + IH P + + + PA++RL ++EL+A QI+LL R+ + + Sbjct: 182 -QFTNGYVLKEALHYIHEPPLNANMQQLALGSHPAQQRLIFEELVAHQISLL-TRRAYIR 239 Query: 250 EIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 +I P +A+ +L +PF T +Q+ K+I D+ Q MLR++QGDVG+GKTL Sbjct: 240 QIASPKFEPSQTLAKALLAQLPFQMTSAQKRVSKEIAHDLHQSQPMLRLVQGDVGAGKTL 299 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VA IA A+EAG Q +MAP ILA+QHY K++ + I V ++G R +A Sbjct: 300 VAAIAACHALEAGWQVALMAPTEILAEQHYLNFKRWFEPLSIQVGWLSGKQKGKARTQAE 359 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLL 425 E I GQ +++GTHALFQD++++ KL LVI+DEQHRFGV QRL L K PH L+ Sbjct: 360 ELIRTGQVQLVMGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLALRNKGVDHFTPHQLV 419 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EVI R+ EGK+A Sbjct: 420 MTATPIPRTLAMSAYGDLDTSVIDELPPGRTPIQTVTIPLDRREEVINRIASNCLEGKQA 479 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKL 544 YW+C +E+ + + ++ + + F + ++HG+M +K++VM +FK+ +L Sbjct: 480 YWVCTLVEQSETLDAQAAEATYQEIRSRFPELKVGLVHGKMKAEEKQNVMQAFKDNQLQL 539 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 LIATTVIEVG+DV +ASI++IENAE GL+QLHQLRGRVGRG + S C+LLY PLS+N Sbjct: 540 LIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCVLLYKHPLSQNG 599 Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 RLS+L+ + DGF+IAE+DL+ R GE+LG KQ+G F +A+ E D LL A A+ Sbjct: 600 QERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMNFRVAKLERDDHLLVQAHYVAE 659 Query: 665 HIL 667 +L Sbjct: 660 QVL 662 >gi|87121086|ref|ZP_01076977.1| ATP-dependent DNA helicase RecG [Marinomonas sp. MED121] gi|86163578|gb|EAQ64852.1| ATP-dependent DNA helicase RecG [Marinomonas sp. MED121] Length = 691 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 240/645 (37%), Positives = 374/645 (57%), Gaps = 14/645 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DL+F+ P + DR I ++ + + G + Q+ KRR + D +G + Sbjct: 33 DLIFHLPIRYQDRTRVLPIGQLKFGDEIVVEGKVIS-CEVQMGKRRSLVCRIRDDSGSLC 91 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYS 161 L FF+ K F G+ I G++++ + M HP Y + + + +Y Sbjct: 92 LRFFHFNASQ-KKQFESGKAIRCFGEVRRGSTGLEMFHPEYQLVSDDWQAGDDRLTPIYP 150 Query: 162 LPTGLSVDLFKKIIVEALSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 L G++ + + + +AL L L EW+ + + Q+ P++ +A +H P + E Sbjct: 151 LTEGITQNKIRLLCEQALEHLSPYNLQEWLPETVRQEFQLPALYDAVKYLHQPPTDANIE 210 Query: 220 ----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275 + P + RL+++ELLA Q++L+ + + K+++ I +N G++ K+L+N+PFSPT Sbjct: 211 ELKSGSHPTQYRLSFEELLAHQLSLIGKKFKAKEDLSISLNEPGEVLTKLLKNLPFSPTN 270 Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 +Q + +IL+D+ + + MLR++QGDVGSGKTLVA + + V Q +MAP ILA+ Sbjct: 271 AQNRVVGEILEDLKKGHPMLRLIQGDVGSGKTLVAAMTASVFVAQNLQVAVMAPTEILAE 330 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 QH ++ + I V + G + R + L +IA G A I++GTHALFQDS++++ L Sbjct: 331 QHLINFSQWFEPLGIEVAWMVGKLKGKQREQELAKIASGDAKIVVGTHALFQDSVEFHNL 390 Query: 396 ILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEK 451 L I+DEQHRFGV QR+ L +K PH L+MTATPIPRTL +++ D+D S I E Sbjct: 391 SLAIIDEQHRFGVHQRMALREKGMNGQLQPHQLIMTATPIPRTLAMSAYADLDCSIIDEL 450 Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511 P GR P+ T+++ R DEVI R++ EG++AYW+C IEE ++ + L Sbjct: 451 PPGRTPVTTIVVSDQRRDEVISRVQAACQEGQQAYWVCTLIEESDALQCQAAEDTATMLS 510 Query: 512 EHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 E +I ++HGR+ +K +M FK G +LL+ATTVIEVG+DV +AS+++IEN E Sbjct: 511 EQLQGLAIGLVHGRLKAQEKADIMARFKAGELQLLVATTVIEVGVDVPNASLMVIENPER 570 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630 GLAQLHQLRGRVGRG S C+LLY PL + RLS ++ T DGF IAE+DL+ R Sbjct: 571 LGLAQLHQLRGRVGRGSAASHCVLLYKTPLGQQGKARLSTMRETSDGFKIAEKDLELRGP 630 Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 GE+LG +Q+G+ +F +A + LL+ + A+ + P+ S Sbjct: 631 GELLGARQTGLMEFKVADLQRDKGLLDQVQATAQRLYHHHPEAIS 675 >gi|332975893|gb|EGK12770.1| DNA helicase RecG [Psychrobacter sp. 1501(2011)] Length = 748 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 261/712 (36%), Positives = 394/712 (55%), Gaps = 64/712 (8%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P+ GVG K L ++ R DLL + P + DR I+E+ + + Sbjct: 25 PVHVLAGVGSKIEGQLEQL------GIKRLFDLLLHLPRDYEDRSRLVNINELQDGQSAL 78 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G ++ + KR +++ D TG + L FF +++ + G ++ + G++K Sbjct: 79 IEGEVT----YVDNKRSGMTVVIEDATGALQLRFFKVYAGLVQTMTL-GTRLRLFGEVKI 133 Query: 132 LKNRIIMVHPHY--------IFHNSQDVNFPLIEAVY----------SLPT----GLSVD 169 + I M HP Y + + +P ++ ++ +L T GL + Sbjct: 134 SRYGIQMAHPEYSIVSPGAPVINTGLQPIYPTVKGLHQNKLRTLLKLALQTVHQQGLPLS 193 Query: 170 LFKKIIVEALSRLPV-LPE--------------WIEKDLLQKKSFPSIA--EAFNIIHNP 212 +F EA++ LP LP+ Q S+ ++ EA +IH P Sbjct: 194 VFNSADWEAVNHLPAPLPKNSYGLPLPSAPVTPANPSSSSQAPSWQTLTLFEALTLIHTP 253 Query: 213 RKAKDFEWTS-----------PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI 261 D + PA +RL +EL A Q+++L RKQ + + + Sbjct: 254 PMHTDIGLQAAQLTQLKDRIHPACQRLIVEELTAHQLSMLYRRKQLHQHKAPKCDKHSSL 313 Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321 A ++L N+PFS TK+Q+ I +I DM+ MLR++QGDVG+GKTLVA +A A+++G Sbjct: 314 ADRLLANLPFSLTKAQDRVINEITSDMATSVPMLRLVQGDVGAGKTLVAALAACYALDSG 373 Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q +MAP ILA+QH K + + I V + G RR+AL+ +A + +++G Sbjct: 374 WQVAVMAPTEILAEQHLINFKSWFEPLGIGVGWLAGKQTAKQRREALKAVAENEVQVVVG 433 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLT 438 THALFQD++ + KL L I+DEQHRFGV+QR+ LT K A PH L+MTATPIPRTL ++ Sbjct: 434 THALFQDAVVFAKLGLAIIDEQHRFGVEQRMALTDKGVADSTPHQLIMTATPIPRTLAMS 493 Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498 + GD+D S I E P GR PI TV I R DEVIER+ + EGK+AYW+CP +++ Sbjct: 494 AYGDMDTSIIDELPPGRTPITTVTIDRARRDEVIERIAINCKEGKQAYWVCPLVDDSNTL 553 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 N ++ + L E I ++HG+M +K++VM +FKNG LL+ATTVIEVG+DV Sbjct: 554 NAQAAEATYADLSERLDIRIGMVHGKMKGAEKQAVMAAFKNGELDLLVATTVIEVGVDVP 613 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618 +AS+++IENAE GL+QLHQLRGRVGRG S C+LLY PLS+ RL+VL+++ DGF Sbjct: 614 NASLMVIENAERLGLSQLHQLRGRVGRGSTKSFCVLLYQTPLSETGIERLNVLRDSNDGF 673 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670 +IA++DL+ R GE+LG +Q+G + ++ ++LL IA AK ++ D Sbjct: 674 VIAQKDLQLRGPGELLGKRQTGNVGYYVSDLSRDENLLMIASHLAKRLINDD 725 >gi|70733354|ref|YP_263129.1| ATP-dependent DNA helicase RecG [Pseudomonas fluorescens Pf-5] gi|68347653|gb|AAY95259.1| ATP-dependent DNA helicase RecG [Pseudomonas fluorescens Pf-5] Length = 691 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 264/681 (38%), Positives = 396/681 (58%), Gaps = 30/681 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +GVG+ + L+K+ G N D+LF+ P + DR I + + Sbjct: 8 PVTALKGVGESMAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRVVPIGALRPGQDAV 61 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G +S + + KRR + L DGTG ++L FY + K+ G ++ G+ + Sbjct: 62 IEGTVS-GADVVMGKRRSLLVRLQDGTGGLSL-RFYHFSNAQKDGLKRGTRVRCYGEARP 119 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLP--VLP 186 + + + HP Y S D P+ + +Y L GL+ + + ++L+ L LP Sbjct: 120 GASGLEIYHPEY-RAISGDEPPPVDQTLTPIYPLTEGLTQQRLRLLCQQSLALLGPRSLP 178 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIA 239 +W+ ++L + + +A +H+P D + W A+ RLA++ELL Q++ Sbjct: 179 DWLPEELARDYQLAPLDDAIRYLHHPPADADVDELALGHHW---AQHRLAFEELLTHQLS 235 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 +R + + + + K+ K L+N+ F+PT +Q+ +I D+SQ MLR++Q Sbjct: 236 QQRLRDSLRSQRAPVLPLARKLPVKYLKNLGFAPTGAQQRVGNEIAYDLSQPEPMLRLIQ 295 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG+GKT+VA +A A+EAG Q +MAP ILA+QH+ K++ + + V + G + Sbjct: 296 GDVGAGKTVVAALAALQALEAGYQVALMAPTEILAEQHFITFKRWLEPLGLEVAWLAGKL 355 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R ALE+IA G A +++GTHALFQD +Q+ L LVI+DEQHRFGVQQRL L QK Sbjct: 356 KGKARSAALEQIAGG-APMVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRQKGV 414 Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 PH L+MTATPIPRTL +++ D+D S + E P GR P+ TV++ +R EVIER+ Sbjct: 415 GGRLCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVTDSRRIEVIERV 474 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 + +EG++AYW+C IEE +E ++ F L + +IHGRM +K +VM Sbjct: 475 RAACAEGRQAYWVCTLIEESEELTCQAAETTFEDLSSALGELRVGLIHGRMKAPEKAAVM 534 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 FK G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+L Sbjct: 535 AEFKAGNLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVL 594 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 LYHPPLS+ RL +++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A Sbjct: 595 LYHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDAD 654 Query: 655 LLEIARKDAKHILTQDPDLTS 675 LL R A+ +L + PD S Sbjct: 655 LLPAVRDAAQALLERWPDHVS 675 >gi|56461474|ref|YP_156755.1| DNA helicase RecJ [Idiomarina loihiensis L2TR] gi|56180484|gb|AAV83206.1| DNA helicase RecJ [Idiomarina loihiensis L2TR] Length = 693 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 263/676 (38%), Positives = 404/676 (59%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+ +GVG+K ++ L K+ G A+ + D L + P + DR ++++++ R Sbjct: 10 PLTVLKGVGEKVAVKLRKL---GLASVS---DALLHLPLRYEDR---TQVTDVANLRAGV 60 Query: 72 ITGYIS--QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 T + +H+ + ++R +D TG I+L FF LK F +G ++ G++ Sbjct: 61 ATNVLVTVRHADIKYGRKRMLICQASDETGSISLRFFQFSAAQLKQ-FAQGTQLLAFGEV 119 Query: 130 KKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 ++ MVHP Y + + +N + VY + G++ + +KII +AL+ L L Sbjct: 120 RRGMTGWEMVHPEYRMVKAGEPLNMQETLTPVYPMTEGVTQGILRKIIEQALTYLQPGSL 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALL 241 PE + ++L + S+ +A +H P + PA++RLA +EL+A Q++LL Sbjct: 180 PELLPENL--RPHQLSLEQAILTLHRPPVDVPLALLEQGEHPAQQRLASEELIAHQLSLL 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R+ + + G I G + + L+ +PFSPT +Q +K+I DM+Q M+R++QGD Sbjct: 238 QLRQARQAQAGFTIKGNGALQEAFLKQLPFSPTGAQTRVVKEITSDMAQGQPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA ++ AA+EAG Q +MAP +L++QH ++ I V ++G Sbjct: 298 VGSGKTLVAALSALAAIEAGYQVALMAPTELLSEQHAITFSQWLMPLGINVAWLSGKSKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 RR+ L ++ G H+++GTHALFQ ++Y +L LVI+DEQHRFGV QRL+L +K Sbjct: 358 KSRRELLAQLKQGDIHLLVGTHALFQADVEYRRLALVIIDEQHRFGVHQRLQLREKGVQA 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+ S I E P GR P+ TV IP R ++++ER++ Sbjct: 418 GVHPHQLIMTATPIPRTLAMTAYADLATSVIDELPPGRTPVTTVAIPDTRREQIVERVRE 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 V +EG++AYW+C IEE ++ + N L E SI ++HGR+ KE VM Sbjct: 478 VCATEGRQAYWVCTLIEESDVLECQAAEDTANDLQEQLPGLSIGLVHGRLKHEQKEQVMQ 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 AFKAGDIDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 YH PLS+ + RL VL+ + DGF+IA+ DL+ R GE+LG +Q+G+ + +A E ++L Sbjct: 598 YHSPLSQTAQQRLGVLRESNDGFVIAQRDLEIRGPGELLGHRQTGLAELKVADLERDEAL 657 Query: 656 LEIARKDAKHILTQDP 671 + A+ A+H+L P Sbjct: 658 IPEAQNIAQHVLEHYP 673 >gi|85711928|ref|ZP_01042983.1| DNA helicase RecJ [Idiomarina baltica OS145] gi|85694325|gb|EAQ32268.1| DNA helicase RecJ [Idiomarina baltica OS145] Length = 691 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 263/678 (38%), Positives = 408/678 (60%), Gaps = 30/678 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+T +GVG K + L K+ N D +F+ P+ + DR ++ I+ R Sbjct: 8 PLTTLKGVGDKVAKKLEKL-GLVTVN-----DAIFHLPARYEDR---TQVYRIAYAR-PG 57 Query: 72 ITGYIS---QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 + G+ ++ + ++R + D TG +TL FF LK F G + V G+ Sbjct: 58 VAGHFQVTVDNADIKYGRKRMLVCRVRDETGTMTLRFFQFSAAQLKQ-FSAGTSLLVFGE 116 Query: 129 IKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLP--V 184 ++ + + ++HP Y + +S + P + +Y G+ +KII +ALS + Sbjct: 117 VRAGLSGLEVIHPEYRVLSSSDAIELPDTLTPIYPTTEGVYQASLRKIIDQALSYVTERA 176 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRK----AKDFEWTSPARERLAYDELLAGQIAL 240 LPE + + L Q S+ EA +HNP K A+ + + PA++RLA +EL+A Q++L Sbjct: 177 LPELLPEPL-QPHDL-SLVEALKTLHNPPKDVGLAQLEQGSHPAQQRLAMEELIAHQVSL 234 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L +R++ ++E +N + + + L+ +PF PT +Q+ + +I D++++ M+R++QG Sbjct: 235 LQLREKRQQERAHALNADPHLQSEFLKQLPFKPTAAQQRVLSEIHADLAREQPMMRLVQG 294 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKTLVA +A AA+E G Q IMAP IL++QH +++ I V ++G Sbjct: 295 DVGSGKTLVAALAALAAIEQGHQVAIMAPTEILSEQHALTFEQWFAPLGIEVAWLSGRSK 354 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT- 419 R++ LE++A G+ +I+GTHALFQ + Y+ L LVI+DEQHRFGV QRL+L +K Sbjct: 355 GKARQRTLEQLASGRVQLIVGTHALFQADVHYHSLALVIIDEQHRFGVHQRLQLREKGVQ 414 Query: 420 ---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PH L+MTATPIPRTL +T+ D+ S I E P GR PI TV+IP R D+VIER++ Sbjct: 415 AGFQPHQLIMTATPIPRTLAMTAYADLATSVIDELPPGRTPITTVVIPDTRRDQVIERVR 474 Query: 477 VVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 V + EG++AYW+C IEE + ++ + L E ++ ++HGRM KE+VM Sbjct: 475 EVCTHEGRQAYWVCTLIEESEVLECQAAEDTATELQEQLDGLTVGLVHGRMKADQKEAVM 534 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 FK+G LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C+L Sbjct: 535 SRFKSGEIDLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVL 594 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 LY PLS+ + RLSVL+++ DGF+IA+ D++ R GE+LG +Q+G+ + +A E + Sbjct: 595 LYKTPLSRTATERLSVLRDSNDGFVIAQRDMEIRGYGELLGQRQTGLTQMKVADIERDEV 654 Query: 655 LLEIARKDAKHILTQDPD 672 L+ A+ A+ ++ + P+ Sbjct: 655 LIPEAQTVAEELIRKYPN 672 >gi|91774408|ref|YP_544164.1| ATP-dependent DNA helicase RecG [Methylobacillus flagellatus KT] gi|91708395|gb|ABE48323.1| ATP-dependent DNA helicase RecG [Methylobacillus flagellatus KT] Length = 686 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 263/680 (38%), Positives = 390/680 (57%), Gaps = 35/680 (5%) Query: 8 PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67 P + L +G+ L+K+ C + LL + P ++D I ++ Sbjct: 6 PANSKLDGIKGMTPALQGRLAKLGICN------WQGLLLHMPLRYLDETRITAIRDLHTG 59 Query: 68 RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 + G I H+ Q + R+ L D TG++ L F + + EGR I G Sbjct: 60 EQAQVQGEIV-HTEVQYRPRKALVCRLRDDTGQLVLRFLHFYPSQVAT-LKEGRYIRAFG 117 Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV---YSLPTGLSVDLFKKIIVEALSRLPV 184 +++ MVHP + + P+ EA+ Y GLS + +K I AL + + Sbjct: 118 EVRGGFFGWEMVHPQC---RQVEAHAPVAEALTPFYPTTAGLSQAVLRKWISWALEHVDI 174 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPR--------KAKDFEWTSPARERLAYDELLAG 236 E + +++ S PS +E+ +++H+P +++D PA RLA+DELLA Sbjct: 175 -AEILPQEIYSGLSLPSFSESLHLLHHPTPDTALRSLESRDH----PAWRRLAFDELLAQ 229 Query: 237 QIALLLMRKQF--KKEIGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 Q++ MRK ++ G P + + +LR++PF+ T++Q+ +I +D+ Q Sbjct: 230 QLS---MRKHHARRRHQGAPALAPSRTLVTALLRSLPFTLTQAQQRVAVEICRDLEQPYP 286 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R+LQGDVGSGKT+VA +A AVE G QA IMAP ILA+QHY+ ++ + I V Sbjct: 287 MQRLLQGDVGSGKTIVAAMAALQAVENGWQAAIMAPTEILAEQHYQKMQTWLAPLGIRVA 346 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++G+ + RR+ + + +G A ++IGTHALFQ+ + + +L L IVDEQHRFGVQQRL Sbjct: 347 WLSGSQGKKERREMMAAVENGVAQLVIGTHALFQEQVVFQRLGLAIVDEQHRFGVQQRLS 406 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 L QK PH L+M+ATPIPRTL ++ D+D+S I E P GR PI T ++ R DEV+E Sbjct: 407 LRQKGVQPHQLMMSATPIPRTLSMSYFADLDVSVIDELPPGRTPIVTRLVSDARRDEVLE 466 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532 R++ EG++AYW+CP IEE + ++V E + L E F + ++HGRM +K++ Sbjct: 467 RVQHACMEGRQAYWVCPLIEESEVLQLQTVTETYERLREAFPHLRVGLVHGRMKPAEKQA 526 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 VM +F G +LL+ATTVIEVG+DV +AS+++IE+AE GLAQLHQLRGRVGRG SSC Sbjct: 527 VMAAFSAGVTQLLVATTVIEVGVDVPNASLMVIEHAERMGLAQLHQLRGRVGRGAAKSSC 586 Query: 593 ILLYHP-PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 ILLY LS+ + RL ++ + DGF IA+ DL R GE +G++QSG+P IA E Sbjct: 587 ILLYQEGKLSETARARLRIIYESNDGFAIAQADLALRGPGEFMGVRQSGVPMLKIADLER 646 Query: 652 HDSLLEIARKDAKHILTQDP 671 LLE AR A +L + P Sbjct: 647 DQELLEAARDIAAELLEKSP 666 >gi|104784351|ref|YP_610849.1| ATP-dependent DNA helicase RecG [Pseudomonas entomophila L48] gi|95113338|emb|CAK18066.1| ATP-dependent DNA helicase [Pseudomonas entomophila L48] Length = 692 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 259/681 (38%), Positives = 389/681 (57%), Gaps = 29/681 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +GVG + L+K+ G N DLLF+ P + DR I ++ + Sbjct: 8 PVTALKGVGDAMAEKLAKV---GLEN---LQDLLFHLPLRYQDRTRVVPIGQLRPGQDAV 61 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G +S + + KRR + L DGTG ++L FY + K G + G+ + Sbjct: 62 IEGVVS-GADVTMGKRRSLVVRLGDGTGVLSL-RFYHFSNAQKEGLKRGTHLRCYGEARP 119 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLP--VLP 186 + + + HP Y N + P+ + +Y GL+ + + ++L +L LP Sbjct: 120 GASGLEIYHPEYRALNGSEPAPPVEQTLTPIYPTTEGLTQQRLRLLCQQSLGQLGPRSLP 179 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIA 239 +W+ +L + +++A +HNP D + W A+ RLA++ELL Q++ Sbjct: 180 DWLPDELARDYQLAPLSDAIRYLHNPPSDADLDELAEGHHW---AQHRLAFEELLTHQLS 236 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 +R+ + + ++ + L N+ FSPT +Q+ +I D+SQ M+R++Q Sbjct: 237 QQRLRESLRSLRAPVLPKASRLPAQYLANLGFSPTGAQQRVGNEIAYDLSQPEPMMRLVQ 296 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG+GKT+VA +A A+EAG Q +MAP ILA+QHY K++ + I V + G + Sbjct: 297 GDVGAGKTVVAALAALQALEAGYQVALMAPTEILAEQHYITFKRWLEPLGIEVAWLAGKL 356 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R ALE+IA G +++GTHALFQD +Q+ L L I+DEQHRFGVQQRL L +K Sbjct: 357 KGKARASALEQIASGTP-MVVGTHALFQDEVQFKHLALAIIDEQHRFGVQQRLALRKKGV 415 Query: 420 ----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 PH L+MTATPIPRTL +++ D+D S + E P GR P+ TV++ +R EV+ER+ Sbjct: 416 MGQLCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRFEVVERV 475 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 + +EG++AYW+C IEE +E ++ F L + +IHGRM +K +VM Sbjct: 476 RAACAEGRQAYWVCTLIEESEELTCQAAESTFEELGSALGELRVGLIHGRMKPAEKAAVM 535 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 FK G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG +S C+L Sbjct: 536 AEFKAGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVL 595 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 LYHPPLS+ RL +++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A Sbjct: 596 LYHPPLSQIGRERLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDAD 655 Query: 655 LLEIARKDAKHILTQDPDLTS 675 LL R A+ +L + P S Sbjct: 656 LLPAVRDAAQALLARWPGHVS 676 >gi|67458770|ref|YP_246394.1| ATP-dependent DNA helicase RecG [Rickettsia felis URRWXCal2] gi|67004303|gb|AAY61229.1| ATP-dependent DNA helicase RecG [Rickettsia felis URRWXCal2] Length = 707 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 270/681 (39%), Positives = 388/681 (56%), Gaps = 35/681 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 LFAP+ TF + + L ++ + R DLLFY P S+ ++ P ++ + + Sbjct: 11 LFAPVKTFINIREDTVSALKRL----GIDNIR--DLLFYLPVSYQNKILSPNLTGVRDGE 64 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 I+ T + + + + +P KI ++ TG + L+FF+R + N G ++GK Sbjct: 65 IIQ-TEVVIESVNLPKKGNQPLKITASNDTGSLLLVFFHRPPPFIFNKLKVGTSHIISGK 123 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188 ++ + + + HP ++ + IE +YSL LS I++A+ + Sbjct: 124 VQFFDHYLQISHPEFVTNPKLAKE---IEPIYSLTYLLSNKQLYSYIIKAMDIFEEKCKG 180 Query: 189 IE----KDLLQK-----KSFPSIAEAFNIIH-----NPRKAKDFEW----TSPARERLAY 230 +E KD L + K S+ + + H NP K W T A+++LA Sbjct: 181 LEDKEVKDYLDEVLQSLKMLHSLCHSRPLCHSRVGGNPEKMDPAVWPRDDTVAAKKQLAA 240 Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290 EL+A QI+LL +R Q + G I IL + F T Q+ I++I + S Sbjct: 241 KELIANQISLLNVRTQIAGKQGNIYPKAAGIQANILNELGFELTSYQKQVIEEIELEQSD 300 Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350 K M+R+LQGDVGSGKTLVAL+ M VEAG QA +MAP +LA QHYEF K +NT I Sbjct: 301 KVEMMRLLQGDVGSGKTLVALLTMVNTVEAGFQATLMAPTDLLANQHYEFFVKALKNTNI 360 Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410 V ++TG + A R+ + ++ +G+ I++GTHALFQ+ + + KL +++DEQHRFGVQQ Sbjct: 361 RVGLLTGKILGAARKNIMIQLENGEIDILVGTHALFQEKVSFKKLGYIVIDEQHRFGVQQ 420 Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470 RL L K P VL+MTATPIPR+L LT GD+ ISK+ KP R PI T + +N+I+ Sbjct: 421 RLNLINKGVNPDVLVMTATPIPRSLALTMFGDMTISKLMGKPKNRLPIATNTMSVNKIEH 480 Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGR 524 +IE + L G++ YWICP IE+ ++ V+ RF+S+ + + IIHG+ Sbjct: 481 IIEAINKKLVAGERVYWICPLIEQGEKEGPEEDGLLMDVMNRFDSIENIYRGYVGIIHGK 540 Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584 M + K+ +M FK G K+L+ATTVIEVGIDV +A++I+IENAE FGLAQLHQLRGRVG Sbjct: 541 MKNEQKDQIMKQFKEGEIKILVATTVIEVGIDVPEATLIVIENAEQFGLAQLHQLRGRVG 600 Query: 585 RGEEISSCILLYHPP-LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643 RG S CILLY+P L K + R ++K T DGF IAE+DLK R GEILG+KQSG + Sbjct: 601 RGSLQSYCILLYNPKRLGKVARGRFEIMKQTNDGFYIAEQDLKLRGSGEILGVKQSGEME 660 Query: 644 FLIAQPELHDSLLEIARKDAK 664 F A LL A K A+ Sbjct: 661 FFFADLAKDYDLLLKAHKFAE 681 >gi|95929154|ref|ZP_01311898.1| ATP-dependent DNA helicase RecG [Desulfuromonas acetoxidans DSM 684] gi|95134652|gb|EAT16307.1| ATP-dependent DNA helicase RecG [Desulfuromonas acetoxidans DSM 684] Length = 704 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 258/687 (37%), Positives = 395/687 (57%), Gaps = 23/687 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PLS+ RGVG K L+++ DLL+ P + DR + I+++ Sbjct: 11 LNTPLSSLRGVGPKLCEKLTRL------GLHTVEDLLYTLPHRYEDRRHFSTINQLKPGE 64 Query: 69 IVTITGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 G I + + R +++++ D TG++ L +F+ + + +K + GR + V Sbjct: 65 PGQFRGKILNADEVPIGRGRQKLFEVVVGDDTGQMLLKWFHYRRDWMKKNYTPGRIVQVY 124 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS----RL 182 G+++ R ++HP F+++ D I VY L GLS + +A++ + Sbjct: 125 GEVRFYSGRREILHPEIDFNDATDSASLRILPVYPLTEGLSQKQLRNFCQQAVADYADSV 184 Query: 183 PV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQ 237 P LPEW+ ++K+ + +A H P DF + PAR L YDE Q Sbjct: 185 PTHLPEWV----MKKRDLLPLNQALLHCHCPPVDSDFLCLQQGQDPARRTLVYDEFFYLQ 240 Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 + L L R+ + E G +E + Q + + +PFS T +Q+ + +I QDM + M R+ Sbjct: 241 LGLTLRRQGVQVEQGRAFTLEHRYTQPLAKALPFSLTAAQKRVLGEIKQDMLAPHPMNRL 300 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 +QGDVGSGKT+VAL+A AVE G QA ++AP ILA+QHY + + ++TG Sbjct: 301 IQGDVGSGKTIVALMAALIAVENGAQAAVLAPTEILAEQHYNQFHHWMTQLGLHCALLTG 360 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 + P++ R+ L+ +AHG+ +++GTHA+ Q + + L LVI+DEQHRFGVQQR +L +K Sbjct: 361 STPKSERQTLLDGLAHGEIKLLVGTHAILQPDVTFADLGLVIIDEQHRFGVQQRHQLRKK 420 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 P L+MTATPIPRTL LT GD+ +S I E P GR PI T I ++ ++++ ++ Sbjct: 421 GHNPDTLVMTATPIPRTLSLTLYGDLAMSVIDELPPGRTPITTRIARSSQRPQLLDFVRR 480 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMD 535 L +G + Y++ P +EE + S ++ E F +L + S S ++HGR+ DKE+VMD Sbjct: 481 ELDKGHQVYFVYPLVEESERSELKAATEAFEALEKELGSEYSGGLLHGRLHPRDKEAVMD 540 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK G L+ATTVIEVGIDV +AS ++IE+AE FGLAQLHQLRGRVGRG S C+L+ Sbjct: 541 KFKQGQIHYLVATTVIEVGIDVPNASAMVIEHAERFGLAQLHQLRGRVGRGAAKSYCVLV 600 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 S + RL++++++ DGF+IAE DL+ R GE LG +Q+G+ F +A SL Sbjct: 601 PSEQCSHDGQQRLNIMQSSNDGFVIAEADLELRGPGEFLGTRQAGIENFRVANLLRDASL 660 Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIR 682 LE AR+DA ++ QD LTS + ++R Sbjct: 661 LEQAREDALQLIEQDDFLTSPQYYAVR 687 >gi|71083684|ref|YP_266404.1| ATP-dependent DNA helicase recG [Candidatus Pelagibacter ubique HTCC1062] gi|71062797|gb|AAZ21800.1| ATP-dependent DNA helicase recG [Candidatus Pelagibacter ubique HTCC1062] Length = 683 Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust. Identities = 262/684 (38%), Positives = 409/684 (59%), Gaps = 24/684 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L A L+ GVGKK L K DLL+ P S+ DR KI ++ Sbjct: 10 LLADLTKLNGVGKKTMEILKK------KKVNNIFDLLWRLPKSYTDRTLVSKICDLQIGV 63 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 I TI + F + P ++ D TG+I +FF ++ + ++T++GK Sbjct: 64 IQTIR-IVPLKYQFPRVRNLPNRVNCIDETGKIDCIFFNSHEGYVRKILPLNEEVTISGK 122 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV---YSLPTGLSVDLFKKIIVEALSRLPVL 185 I K R + +P YI SQD LIE + YSL G++ + KII + L LP+L Sbjct: 123 IGNYKGRYQITNPTYI---SQDS--SLIENIDNKYSLTEGITEKTYNKIINQILKNLPIL 177 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 PEW +KD+L+ + S E+ +H+P+ ++++ S +RLAYDE+LA + +RK Sbjct: 178 PEWHDKDILKIFNNESWNESIIKLHDPKNIENYK--SDFYKRLAYDEILASFLVNSEIRK 235 Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + KK I N K + I+ + F+ T Q+ ++ DI +D++ K++M R+LQGDVGSG Sbjct: 236 KIKKIKKISKNFSEKAHKNIVNKLNFTLTNDQKISLGDINKDLNSKSKMFRLLQGDVGSG 295 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VALI+ + +G Q +MAP ILA+QHY KK I +E+++ + ++ Sbjct: 296 KTIVALISSLNVINSGFQVALMAPTEILARQHYTLAKKLFP-KDIKIELLSSKSENSEKK 354 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVL 424 + ++ + + + ++ GTHA+FQ I + L +I+DEQH+FGV+QR L+ K VL Sbjct: 355 RIIKNLENNEIQMVFGTHAIFQKKIIFANLGYIIIDEQHKFGVRQRKLLSDKGGDNCDVL 414 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 LM+ATPIPRTL ++ GD+D+S I EKP+ RK +KT ++ID+VI +K + EG + Sbjct: 415 LMSATPIPRTLTMSVYGDMDVSIIKEKPSNRKEVKTYSKLESKIDDVINFVKKEIKEGNQ 474 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544 +W+CP IEE K+ + +S V ++ L+E F + +A++HG++++ +KE +++ F N + Sbjct: 475 IFWVCPLIEESKKLDHQSSVTKYKFLNEIFPNKVALLHGKIANEEKEEILNKFLNKKYSI 534 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 L++TT+IEVGID +A++IIIENA FGL+QLHQLRGRVGRG + +SCIL++ LS N+ Sbjct: 535 LVSTTIIEVGIDFPNANVIIIENANKFGLSQLHQLRGRVGRGTKQASCILMFKSNLSVNA 594 Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 R+++LKN+ DGF I+EED+K R G++LG KQSG+ F +A P ++ L +A K K Sbjct: 595 KKRINILKNSNDGFEISEEDMKLRGFGDLLGFKQSGIKNFRLADPIQNEDLFLMAEKQIK 654 Query: 665 HILTQDPDLTSVRGQSIRILLYLY 688 I ++ D+ + LL LY Sbjct: 655 KIELENTDIKKYKA-----LLKLY 673 >gi|262370592|ref|ZP_06063917.1| ATP-dependent DNA helicase RecG [Acinetobacter johnsonii SH046] gi|262314392|gb|EEY95434.1| ATP-dependent DNA helicase RecG [Acinetobacter johnsonii SH046] Length = 681 Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust. Identities = 271/680 (39%), Positives = 399/680 (58%), Gaps = 37/680 (5%) Query: 10 FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69 A + +GVG + L K+ N DLLF+ P + DR +++++ R Sbjct: 1 MAAVHQLQGVGAASAALLEKL------NLFTTDDLLFHLPRDYEDRSTIIPMNQLTVGRS 54 Query: 70 VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G I Q F KR+ I L D G++TL F Y + L + G ++ + G++ Sbjct: 55 YLLEGTI-QGVDFPPGKRKSMAIGLQDDFGKVTLRF-YHIYKGLTDRAKVGNRLRIFGEV 112 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIE--AVYSLPTGLSVDLFKKIIVEALSR-LPVLP 186 + + M HP I ++ P + A+Y GL+ F++ I +AL++ LP Sbjct: 113 RVGARGLEMYHPE-IQLITEHTPLPQTQLTAIYPSTEGLTQPKFREYIKQALAKHSDDLP 171 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242 E + + +A + IH+P + + + PA++RL ++EL+A Q++LL Sbjct: 172 ELLPAKFTNGYV---LKQALDYIHHPPVDANMLQLSQGSHPAQQRLIFEELVAHQVSLL- 227 Query: 243 MRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 R+ + ++I P I+ + A+++L ++PF T +Q+ K+I+QD+ MLR++QGD Sbjct: 228 SRRAYIQQIEAPRISASRQFAKQLLSSLPFEMTNAQKRVSKEIVQDLKLNKPMLRLVQGD 287 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKTLVA +A A+E G Q +MAP ILA+QHY KK+ + + V ++G Sbjct: 288 VGAGKTLVAGVAACHALEEGWQVALMAPTEILAEQHYLNFKKWFEPLGLSVSWLSGKQKG 347 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-- 419 R A + I G AH+++GTHALFQD++++ KL LVI+DEQHRFGV QRL L K Sbjct: 348 KARATAEQAIVDGTAHLVVGTHALFQDNVRFAKLGLVIIDEQHRFGVDQRLALRNKGAQN 407 Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV++R+ Sbjct: 408 MTPHQLVMTATPIPRTLAMSAYGDLDTSVIDELPPGRTPIQTVTIPLDRREEVLQRIASN 467 Query: 479 LSEGKKAYWICPQIEEKK-------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531 EGK+AYW+C +EE + E+ + + ERF L +I ++HG+M +K+ Sbjct: 468 CLEGKQAYWVCTLVEESETLDAQAAEATYLEIKERFPEL------NIGLVHGKMKADEKQ 521 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 +VM FK +LLIATTVIEVG+DV +ASI++IENAE GL+QLHQLRGRVGRG + S Sbjct: 522 AVMQQFKANELQLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASF 581 Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 C LLY PLS+N RL V++ T DGFLIAE+DL+ R GE+LG KQ+G F +A+ E Sbjct: 582 CALLYKSPLSQNGQERLRVMRETNDGFLIAEKDLEIRGPGELLGTKQTGDMGFRVAKLER 641 Query: 652 HDSLLEIARKDAKHILTQDP 671 D LL A A IL P Sbjct: 642 DDHLLNQAHYVAAQILKDYP 661 >gi|282599850|ref|ZP_05972118.2| ATP-dependent DNA helicase RecG [Providencia rustigianii DSM 4541] gi|282567381|gb|EFB72916.1| ATP-dependent DNA helicase RecG [Providencia rustigianii DSM 4541] Length = 694 Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust. Identities = 260/681 (38%), Positives = 392/681 (57%), Gaps = 38/681 (5%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L++ G+G S +SKI N + DLL + P + D +I ++ TI Sbjct: 12 LTSLHGIGASQSEKMSKI----GLNTVQ--DLLLHFPLRYEDHTRLYQIKDLLPGTTATI 65 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 TG + Q + ++R L++DGTG +TL FF M KN EGR++T G+I++ Sbjct: 66 TGEVLQ-TKVVFGRKRMMTCLISDGTGNLTLRFFNFSAAM-KNSLAEGRQVTAYGEIRRG 123 Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIE---AVYSLPTGLSVDLFKKIIVEALSRLP------ 183 ++HP Y D N L E VY G+ +K++ +AL+ L Sbjct: 124 NTGPEIIHPEYKVSQDTD-NITLQENLTPVYPTTEGVRQATLRKVMEQALAMLDNGNIQE 182 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS------PARERLAYDELLAGQ 237 +LPE + + L+ S+ +A ++HNP D E PA++RL +ELLA Sbjct: 183 LLPEELNRGLI------SLPDAIRLLHNP--PPDVELGELEKGHHPAQKRLVLEELLAHH 234 Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 +++L +R ++ P+ GK+ L N+PFSPT +Q + +I +D+ + M+R+ Sbjct: 235 LSMLAIRAGNERLYAEPLVPTGKLKSPFLDNLPFSPTNAQNRVVSEIEKDLHRDTPMMRL 294 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 +QGDVGSGKTLVA +A A+E G Q +MAP ILA+QH K++ + I V + G Sbjct: 295 IQGDVGSGKTLVAALAAICAIENGKQVALMAPTEILAEQHANTFKQWLEPLGIKVGWLAG 354 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL--- 414 R++ E IA G+ +++GTHA+FQ+ + ++ L LVI+DEQHRFGV QRL L Sbjct: 355 KQKGKARQQQQESIADGEVMMVVGTHAIFQEQVSFHSLGLVIIDEQHRFGVHQRLALREK 414 Query: 415 -TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 Q+ PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++++E Sbjct: 415 GEQQGNHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDTRRNDIVE 474 Query: 474 RLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKE 531 R++ L EG++AYW+C IE+ + ++ L + ++HGRM +K+ Sbjct: 475 RVRQACLDEGRQAYWVCTLIEDSEVLEAQAAQVTSEELALALPELKVGLVHGRMKPAEKQ 534 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 S+M +FKN +LL+ATTVIEVG+DV +AS++II+N E GLAQLHQLRGRVGRG S Sbjct: 535 SIMAAFKNNEIQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAIASH 594 Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 C+LLY PL+ + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A Sbjct: 595 CVLLYKTPLTHTAKQRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLR 654 Query: 652 HDSLLEIARKDAKHILTQDPD 672 +L ++ A+HI P+ Sbjct: 655 DQYMLPEVQRLARHIQQNYPE 675 >gi|254491939|ref|ZP_05105118.1| ATP-dependent DNA helicase RecG [Methylophaga thiooxidans DMS010] gi|224463417|gb|EEF79687.1| ATP-dependent DNA helicase RecG [Methylophaga thiooxydans DMS010] Length = 695 Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust. Identities = 264/678 (38%), Positives = 390/678 (57%), Gaps = 24/678 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L P++ +GVG K + L KI + DLLF+ P + DR + + ++ Sbjct: 7 LSQPVTALKGVGDKVAERLIKI------GVQQVQDLLFHLPLRYQDRTRLMPLGALRLQQ 60 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 V I G I Q S + +RR ++DGTG I L FF+ ++ + +GR+I G+ Sbjct: 61 EVLIEGVI-QLSQVKFGRRRSLLCHVSDGTGAIILRFFHF-SKAQQQQLTKGRRIRCFGE 118 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLP-- 183 ++ + MVHP Y +++ P+ + VY GL +K+I +ALS L Sbjct: 119 VRNGPASLEMVHPEYQLL-AEEGAVPVENELTPVYPTTEGLHQLSLRKLIKQALSCLDQE 177 Query: 184 VLPEW-IEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQI 238 +PE I+ L + + S+ +A +H P + PA++RLAY+ELLA Q+ Sbjct: 178 TMPELLIDGARLHQSAEYSLVDALQYVHQPPPDAPVQQLLDRHHPAQKRLAYEELLAQQL 237 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 + +R Q + + + Q +L +PF T++Q+ +ILQDM++ M R++ Sbjct: 238 TMKKLRAQTQHHTAPVLQAKQDKRQALLDVLPFPLTQAQKRVTHEILQDMAEPRPMQRLV 297 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKT+VA +A AV +G QAV+MAP +LA+QH+ + I V G Sbjct: 298 QGDVGSGKTVVAALAAIEAVASGCQAVMMAPTELLAEQHFRTFVNWLSPMNIEVGWCAGK 357 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + R++ L R+ G+ + +GTHALFQD + + L LVI+DEQHRFGV QRL L K Sbjct: 358 QTTSERKQMLARLQAGEISVAVGTHALFQDEVVFNNLGLVIIDEQHRFGVHQRLALRDKG 417 Query: 419 ----TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 + PH L+MTATPIPRTL +T+ D++IS I E P GR P+ TV++P NR +VIER Sbjct: 418 CDIDSMPHQLVMTATPIPRTLAMTAYADLNISVIDEMPPGRTPVTTVVLPDNRRHDVIER 477 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533 + + ++ YW+C IEE + ++ + SL + I ++HGRM DK++V Sbjct: 478 VYAACQQQRQVYWVCTLIEESEHLQCQAAEDTATSLQDSLPDLRIGLVHGRMKTKDKDTV 537 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M +FK G +L+ATTVIEVG+DV +AS+++IENAE GLAQLHQLRGRVGRG+ S C+ Sbjct: 538 MTAFKEGQLDMLVATTVIEVGVDVPNASLMVIENAERLGLAQLHQLRGRVGRGQIESHCV 597 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 L+YHPPLS+N RL L+ T DGF IA+ DL+ R GE+LG +Q+G+P+F +A Sbjct: 598 LMYHPPLSENGQARLKCLRETNDGFKIAQRDLEIRGPGEVLGTRQTGLPQFRVADLIDDQ 657 Query: 654 SLLEIARKDAKHILTQDP 671 LL + A +L + P Sbjct: 658 DLLSVMDNAANVMLKEAP 675 >gi|51473772|ref|YP_067529.1| ATP-dependent DNA helicase RecG [Rickettsia typhi str. Wilmington] gi|51460084|gb|AAU04047.1| ATP-dependent DNA helicase RecG [Rickettsia typhi str. Wilmington] Length = 703 Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust. Identities = 273/688 (39%), Positives = 389/688 (56%), Gaps = 41/688 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 LFAP+ F + + ++ N R DLLFY P S+ ++ P ++E+ Sbjct: 10 LFAPVKAFINIREDTVSAFKRL----GINNIR--DLLFYLPVSYQNKILSPNLTEVRGGE 63 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 I+ T I + Q + +P KI ++ TG I L+FF++ + + N G K ++GK Sbjct: 64 IIQ-TEIIVNSINLQKKGNQPLKITASNNTGSILLVFFHKPPQFILNKLKVGTKHIISGK 122 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188 ++ ++ ++HP +I + IE +YS+ LS I++A+ + Sbjct: 123 VQFFNYQLQILHPEFITNPKLS---KAIEPLYSITYSLSNKQLYSYIIKAIEIFEEKCKG 179 Query: 189 IEKD--------LLQK----------KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAY 230 IE +LQ + S + +I+ NPR A T A+++LA Sbjct: 180 IEDKEVHEYLDVILQNLKILHVFFSPHNLISWSSTMDIVVNPRYA-----TVAAKKQLAI 234 Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290 EL+A QI+LL +R Q ++ G I ILR + F T Q+ I++I + S Sbjct: 235 KELIANQISLLNVRMQINRKQGNIYPKATSIQDNILRELGFELTYYQKQVIEEIESEQSD 294 Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350 K M+R+LQGDVGSGKTLVAL+ M V G QA +MAP +LA QHY+F K +NT I Sbjct: 295 KVEMMRLLQGDVGSGKTLVALLTMVNVVTTGLQATLMAPTDLLANQHYDFFVKALKNTNI 354 Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410 V ++TG + R+ + ++ +G+ I+IGTHALFQ+ + + KL +++DEQHRFGVQQ Sbjct: 355 KVGLLTGKILGKARKNIIIQLVNGKIDILIGTHALFQEKVSFKKLGYIVIDEQHRFGVQQ 414 Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470 RL L K P VL+MTATPIPR+L LT GD+ ISK+ KP R I T + IN+I Sbjct: 415 RLNLINKGVNPDVLIMTATPIPRSLALTMFGDMTISKLMGKPKDRLSIVTKTMSINKIGY 474 Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFR------SVVERFNSLHEHFTSSIAIIHGR 524 +IE + L G++ YWICP I ++++ + V+ RFNS+ + IIHG+ Sbjct: 475 IIEAINKRLIAGERVYWICPLITQREKEALQEDHLLMDVINRFNSIENVYQGYTGIIHGK 534 Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584 M++ KE +M FK G K+L+AT VIEVGIDV +A++I+IENAE FGLAQLHQLRGRVG Sbjct: 535 MANDQKERIMKQFKEGKIKILVATNVIEVGIDVSEATLIVIENAEQFGLAQLHQLRGRVG 594 Query: 585 RGEEISSCILLYHPP-LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643 R S CILLY+P L K + R ++K+T DGF IAE+DLK R GEILGIKQSG Sbjct: 595 RCSLQSYCILLYNPKRLGKVAQNRFKIMKHTNDGFYIAEQDLKLRGSGEILGIKQSGEID 654 Query: 644 FLIAQPELHDSLLEIARKDA-KHILTQD 670 F A + LL A K A + I T+D Sbjct: 655 FFFADLKDDYELLIKAHKVAERAICTKD 682 >gi|312963870|ref|ZP_07778341.1| ATP-dependent DNA helicase RecG [Pseudomonas fluorescens WH6] gi|311281905|gb|EFQ60515.1| ATP-dependent DNA helicase RecG [Pseudomonas fluorescens WH6] Length = 691 Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust. Identities = 259/680 (38%), Positives = 392/680 (57%), Gaps = 28/680 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +GVG+ + L+K+ G N D+LF+ P + DR I ++ + Sbjct: 8 PVTALKGVGEAMAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRVVPIGQLRPGQDAV 61 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G +S + + +RR + L DGTG ++L FY + K G ++ G+ + Sbjct: 62 VEGTVS-GADVVMGRRRSLVVRLQDGTGGLSL-RFYHFSNAQKESLKRGTRVRCYGEARP 119 Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187 + + + HP Y I + + +Y L GL+ +++ ++ L+ L LP+ Sbjct: 120 GASGLEIYHPEYRAITGDEPPPVDTTLTPIYPLTEGLTQQRLRQLCLQTLTMLGPQSLPD 179 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIAL 240 W+ +L + + +A +HNP D + W A+ RLA++ELL Q++ Sbjct: 180 WLPLELARDYQLAPLDDAIRYLHNPPADADVDELALGHHW---AQHRLAFEELLTHQLSQ 236 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 +R+ + + ++ + L N+ F+PT +Q+ +I D+SQ+ MLR++QG Sbjct: 237 QRLRESMRSLRAPAMPKATRLPAQYLANLGFAPTGAQQRVGNEIAYDLSQQEPMLRLIQG 296 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVG+GKT+VA +A A+EAG Q +MAP ILA+QH+ K++ + + V + G + Sbjct: 297 DVGAGKTVVAALAALQALEAGYQVALMAPTEILAEQHFITFKRWLEPLGLEVAWLAGKLK 356 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 R ALE+IA G A +++GTHALFQD +Q+ L LVI+DEQHRFGVQQRL L QK Sbjct: 357 GKTRAAALEQIAGG-APMVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRQKGVG 415 Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PH L+MTATPIPRTL +++ D+D S + E P GR P+ TV++ R EVIER++ Sbjct: 416 GRMNPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVTDTRRVEVIERVR 475 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +EG++AYW+C IEE +E ++ F L + +IHGRM +K +VM Sbjct: 476 GACAEGRQAYWVCTLIEESEELTCQAAETTFEDLTSALGELKVGLIHGRMKPAEKAAVMA 535 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 536 EFKAGNLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLL 595 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 YHPPLS+ RL +++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A L Sbjct: 596 YHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADL 655 Query: 656 LEIARKDAKHILTQDPDLTS 675 L R A+ +L + PD S Sbjct: 656 LPAVRDAAQALLERWPDHVS 675 >gi|119472958|ref|ZP_01614814.1| ATP-dependent DNA helicase recG [Alteromonadales bacterium TW-7] gi|119444627|gb|EAW25937.1| ATP-dependent DNA helicase recG [Alteromonadales bacterium TW-7] Length = 693 Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust. Identities = 266/677 (39%), Positives = 391/677 (57%), Gaps = 30/677 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +GVG K + +++ G N D+LF+ P + DR I+E+S V+ Sbjct: 10 PITELKGVGPKMA---ERLLKLGIKN---VQDMLFHLPLRYEDRTRIYSINELSFHSHVS 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I I + S KRR + +ND TG +TL FF KN G+ I G++++ Sbjct: 64 IEATI-ETSQITFGKRRMLVVQVNDNTGRLTLRFFNFSAAQ-KNALSPGKIIRCFGEVRR 121 Query: 132 LKNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187 + M HP Y + S+ + VY GL K++ + ALS V L + Sbjct: 122 GRAGFEMSHPEYSLSDTPSEQPTASTLTPVYPTTDGL-----KQLSIRALSEQAVELLNK 176 Query: 188 WIEKDLLQKKSFPS---IAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIAL 240 + ++LL + PS +A+A ++H P D + T PA++RL ++ELLA ++L Sbjct: 177 YSVEELLPVQWQPSQLALADALLLLHRPPSNIDVNELEQGTHPAQQRLVFEELLAQNLSL 236 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L +RKQ ++ + ++ K+ + L +PF+PT +Q + +I D++ M+R++QG Sbjct: 237 LKVRKQGQQVKAVSLSSTNKLEPQFLSQLPFAPTSAQNRVVSEIKADLASPYPMMRLVQG 296 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKTLVA ++ A+ G Q +MAP ILA+QH + + I V + G Sbjct: 297 DVGSGKTLVAALSALTAIAQGFQVALMAPTEILAEQHGISFTSWFKQLGIDVAWLGGKTK 356 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-- 418 R LE+IA G++ +I+GTHALFQD +++ L+L+I+DEQHRFGV QRL L +K Sbjct: 357 GKERTATLEKIASGESQMIVGTHALFQDEVKFNNLVLIIIDEQHRFGVHQRLTLREKGQF 416 Query: 419 --TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PH L+MTATPIPRTL +T+ D+++S I E P GR PI TV +P R D++I R+K Sbjct: 417 NGCYPHQLVMTATPIPRTLAMTAYADLEVSIIDELPPGRTPITTVALPDTRRDDIITRVK 476 Query: 477 VVLSEG-KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 +E ++ YW+C I+E + ++ + L E SI ++HGRM +K+S+M Sbjct: 477 SACNEQERQVYWVCTLIDESEALQCQAAEDSAVQLKEALPDLSIGLVHGRMKPAEKQSIM 536 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 D FK G +L+ATTVIEVG+DV +AS+IIIEN E GLAQLHQLRGRVGRG S C+L Sbjct: 537 DDFKKGLIHVLVATTVIEVGVDVPNASLIIIENPERLGLAQLHQLRGRVGRGNIASHCVL 596 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 LYH PLS + RL VL+++ DGF+IAE DL+ R GE+LG KQ+G+ +F IA Sbjct: 597 LYHAPLSHTAQKRLGVLRDSNDGFVIAERDLEIRGPGEVLGTKQTGLAEFKIADLTRDKQ 656 Query: 655 LLEIARKDAKHILTQDP 671 L R A+ +L Q P Sbjct: 657 TLNQVRPIAQQMLNQYP 673 >gi|261250549|ref|ZP_05943124.1| ATP-dependent DNA helicase RecG [Vibrio orientalis CIP 102891] gi|260939118|gb|EEX95105.1| ATP-dependent DNA helicase RecG [Vibrio orientalis CIP 102891] Length = 692 Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust. Identities = 262/676 (38%), Positives = 396/676 (58%), Gaps = 26/676 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG K + L+K+ DLLF+ P + DR I+++ Sbjct: 9 PLTSLTGVGAKVAEKLAKV------GLVTAQDLLFHLPLRYEDRTRVYPIAKLHAGLWAA 62 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + KR+ + ++DG G ITL FF T +KN F EG+ + G+IK+ Sbjct: 63 VQGKVMSVDTL-FGKRKMLAVKISDGNGTITLRFF-NFTAGMKNNFTEGKTVHAYGEIKR 120 Query: 132 LKNRIIMVHPHYIFHNSQ---DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186 + +VHP Y F+ S D+ L VY GL + + +AL L + Sbjct: 121 GGYGLEIVHPDYKFYASNQPADIEQTLT-PVYPTTDGLRQITLRNLTDQALELLDKTAVQ 179 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLL 242 E + L +++ ++A+A + IH P D E PA+ RL +ELLA +++L Sbjct: 180 ELLPNGLYDQQT--TLAQALHTIHRPPPNIDLEQFDEGKHPAQIRLIMEELLAQNLSMLS 237 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R + +++ +P+ + + Q++L +PFSPT +Q +++I QD+ + + M+R++QGDV Sbjct: 238 VRSKGQQDTALPLTPKDTLKQQLLEQLPFSPTNAQARVVQEIEQDLEKPHPMMRLVQGDV 297 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+E G Q +MAP +LA+QH + + I V + G + Sbjct: 298 GSGKTLVAALAALRALEHGYQVALMAPTELLAEQHAINFAHWLEPMGIKVGWLAGKLKGK 357 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK----A 418 + L +IA G+A +++GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +K Sbjct: 358 AKETELAKIASGEAQMVVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGEKQG 417 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + ++++ER++ Sbjct: 418 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKREDIVERVRNA 477 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L+EGK+AYW+C I+E + ++ + L I ++HGRM +K++VM Sbjct: 478 CLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQD 537 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK+ LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C+LLY Sbjct: 538 FKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLY 597 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 H PLSK + RL VL+ + DGF+IA+ DL+ R GE+LG KQ+GM F IA L+ Sbjct: 598 HSPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGMADFKIADLVRDQRLI 657 Query: 657 EIARKDAKHILTQDPD 672 ++ A+HI PD Sbjct: 658 PEVQRIARHIHDNYPD 673 >gi|326797348|ref|YP_004315168.1| ATP-dependent DNA helicase RecG [Marinomonas mediterranea MMB-1] gi|326548112|gb|ADZ93332.1| ATP-dependent DNA helicase RecG [Marinomonas mediterranea MMB-1] Length = 693 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 245/627 (39%), Positives = 362/627 (57%), Gaps = 15/627 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLLF+ P + DR I ++ I G + ++ KRR + D TG ++ Sbjct: 34 DLLFHLPIRYQDRTTVVPIGQLRFGDEAVIEGKVI-GCEIKMGKRRSLICRVKDMTGTLS 92 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV--NFPLIEAVY 160 L FF+ K K+ G+I++ M HP Y D + +Y Sbjct: 93 LRFFHFSAAQ-KKQLENSEKVRCFGEIRRGSTGFEMYHPEYSSIEEDDTLSGQQQLTPIY 151 Query: 161 SLPTGLSVDLFKKIIVEALSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 L GL+ + + + +AL RL L EW+ +L + S P++AEA +H+P K + Sbjct: 152 PLTDGLTQNKIRGLCEQALERLTPFNLQEWLPDAILNQFSLPALAEAIQFLHHPDKGVNL 211 Query: 219 E----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274 PA+ RL+++ELLA Q++L+ R + K++ I + G + Q++L +PFSPT Sbjct: 212 AQLKAGAHPAQYRLSFEELLAHQLSLIGKRIKAKEDKAIAVTEAGNLTQQLLDQLPFSPT 271 Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334 +Q ++L DMS + MLR++QGDVGSGKTLVA + AA V+ G Q IMAP ILA Sbjct: 272 GAQSRVFSEVLADMSSGHPMLRLVQGDVGSGKTLVAGMTAAAVVQKGYQVAIMAPTEILA 331 Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394 +QHY K + + + + + G + R L +I G+A I++GTHALFQD++ ++ Sbjct: 332 EQHYLNFKNWFEPLDVPIAWMIGKLKGKQRDAELLKIKSGEAKIVVGTHALFQDTVTFHN 391 Query: 395 LILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITE 450 L L I+DEQHRFGV QR+ L +K PH L+MTATPIPRTL +++ D+D S I E Sbjct: 392 LALAIIDEQHRFGVHQRMALREKGLQAGFQPHQLIMTATPIPRTLAMSAYADLDCSIIDE 451 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P GR PI T+++ R EVI+R++ +EG++AYW+C IEE + ++ + L Sbjct: 452 LPPGRTPINTIVVSDQRRPEVIDRVRNACTEGRQAYWVCTLIEESEALQCQAAEDTALLL 511 Query: 511 HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 E T+ + ++HGR+ +K +M FK G LL+ATTVIEVG+DV ++S+++IEN E Sbjct: 512 QEQLTNLKVGLVHGRLKAQEKADIMALFKAGEIDLLVATTVIEVGVDVPNSSLMVIENPE 571 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629 GLAQLHQLRGRVGRG S C+LLY PL + RLS ++ DGF IAE+DL+ R Sbjct: 572 RLGLAQLHQLRGRVGRGTTASHCVLLYKAPLGQQGKERLSTMREHTDGFKIAEKDLELRG 631 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLL 656 GE+LG +Q+G+ +F +A + LL Sbjct: 632 PGELLGTRQTGLLEFKVADLQRDKGLL 658 >gi|226946848|ref|YP_002801921.1| ATP-dependent DNA helicase RecG [Azotobacter vinelandii DJ] gi|226721775|gb|ACO80946.1| ATP-dependent DNA helicase RecG [Azotobacter vinelandii DJ] Length = 691 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 255/678 (37%), Positives = 389/678 (57%), Gaps = 24/678 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +GVG + L+++ ET DLLF+ P + DR I + + Sbjct: 8 PVTALKGVGAALAEKLARV-----GLET-LQDLLFHLPLRYQDRTRITPIGALRPGQDAV 61 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G ++ + + +RR + L DG+G ++L F++ T K+ G + G+++ Sbjct: 62 VEGTVAA-ADVVMGRRRSLLVRLQDGSGSLSLRFYHFSTAQ-KDALKRGTPLRCYGEVRP 119 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLP--VLP 186 + + + HP Y N + P+ + +Y GL+ + + +AL+RL LP Sbjct: 120 GASGLEIYHPEYRAQNGLE-PAPVEQTLTPIYPTTEGLTQQRLRGLTEQALTRLGPHSLP 178 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE----RLAYDELLAGQIALLL 242 +W+ +L + + EA +H P D E + R RLA++ELL Q++L Sbjct: 179 DWLPAELARAHRLGPLDEAIRYLHRPPPDADLEELAEGRHWAQHRLAFEELLTHQLSLQR 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R+ + + + ++ Q L N+ F+PT +Q +I D+S+ MLR++QGDV Sbjct: 239 LRESLRSQQAPALPPASRLPQLFLANLGFAPTGAQRRVGAEIAHDLSRSEPMLRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 G+GKT+VA +A A+EAG Q +MAP ILA+QHY ++ + I + + G + Sbjct: 299 GAGKTVVAALAALQAIEAGYQVALMAPTEILAEQHYLNFARWLEPLGIDLAWLAGKLKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--- 419 R ALE+IA G +++GTHALFQD +++ L L I+DEQHRFGVQQRL L QK Sbjct: 359 ARGAALEKIAGG-CPMVVGTHALFQDEVRFRNLALAIIDEQHRFGVQQRLALRQKGIDGR 417 Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH L+MTATPIPRTL +++ D+D S + E P GR P+ T++I +R EVIER++ Sbjct: 418 LCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTLVIADSRRLEVIERVRAA 477 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 EG++AYW+C IEE +E ++ F L ++ +IHGRM +K +VM+ F Sbjct: 478 CLEGRQAYWVCTLIEESEELTCQAAETTFEELSAALGELAVGLIHGRMKPAEKAAVMEEF 537 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 K G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLYH Sbjct: 538 KAGRLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSTASHCVLLYH 597 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PLS+ RL++++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A LL Sbjct: 598 APLSQLGRERLAIMRETSDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLP 657 Query: 658 IARKDAKHILTQDPDLTS 675 R+ A+ +L P S Sbjct: 658 AVREAAQDLLACWPQHVS 675 >gi|292490888|ref|YP_003526327.1| ATP-dependent DNA helicase RecG [Nitrosococcus halophilus Nc4] gi|291579483|gb|ADE13940.1| ATP-dependent DNA helicase RecG [Nitrosococcus halophilus Nc4] Length = 712 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 254/657 (38%), Positives = 382/657 (58%), Gaps = 25/657 (3%) Query: 7 NPLF--APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64 NPL P++ +GVG + L+++ ++ DLLF+ P + DR I + Sbjct: 21 NPLTLSTPVTALKGVGPNLARRLARL------GLSKVQDLLFHLPQRYQDRTQLVPIGAL 74 Query: 65 SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124 R I G I Q S + +RR ++DGTGEI L FF+ T +N ++ Sbjct: 75 QIGREALIEGEI-QLSEIRQGRRRSLVCAVSDGTGEIFLRFFHFSTWQ-QNSLTPAIRLR 132 Query: 125 VTGKIKKLKNRIIMVHPHY---IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 G++++ R+ MVHP Y + ++ + L +Y GL L + +I L Sbjct: 133 CFGEVRQGAGRLEMVHPEYRRLLGEEAEAIEVHLT-PIYPTTEGLRQPLLRDLIQGVLKD 191 Query: 182 L--PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLA 235 L + + + L+ P++++A +H P E P ++RLA++ELLA Sbjct: 192 LGEEGIIDHLPPTFLEGIGLPTLSQAIVYLHQPPPDAPLDVLAEGKHPVQQRLAFEELLA 251 Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 ++L +R + + + EG++ ++ L + F T +QE +++IL+DM++ + M Sbjct: 252 HHLSLRQLRLRATQLQAPSLASEGQLQKRFLAALSFPLTAAQERVVQEILEDMARDSPMQ 311 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R+LQGDVGSGKT+VA +A+ AVEAG QA +MAP +LA+QH ++++ +I VE + Sbjct: 312 RLLQGDVGSGKTVVAALAILQAVEAGHQAALMAPTELLAEQHLRVLQRWFSPFEINVEWL 371 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 RR++L R+ G+A + +GTHALFQ+ + ++ L LV+VDEQHRFGV+QRL L Sbjct: 372 AAKGAAKGRRESLNRLKSGEAQVAVGTHALFQEGVNFHHLGLVVVDEQHRFGVEQRLALR 431 Query: 416 QK----ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471 +K A PH L+MTATPIPRTL +T+ D+D S I + P GR P+ T + R EV Sbjct: 432 EKGRHGAYCPHQLIMTATPIPRTLAMTAYADLDTSVIDQLPPGRIPVATAAVSHRRRTEV 491 Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530 + +++ G++AYW+C IEE ++ + L E I +IHGRM DK Sbjct: 492 VVKVRRACQAGRQAYWVCTLIEESDSLQAQAAEKTAAELAEVLPELRIGLIHGRMKPPDK 551 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 ES M +FK+G LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S Sbjct: 552 ESTMAAFKSGAIHLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGAADS 611 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 C+LLYH PLS+ S RL+ L+ T DGF IA DL+ R GE+LG +Q+G+P++ +A Sbjct: 612 YCVLLYHGPLSELSRARLACLRATNDGFEIARRDLELRGPGEVLGTRQTGLPQYRVA 668 >gi|323494589|ref|ZP_08099693.1| ATP-dependent DNA helicase RecG [Vibrio brasiliensis LMG 20546] gi|323311192|gb|EGA64352.1| ATP-dependent DNA helicase RecG [Vibrio brasiliensis LMG 20546] Length = 692 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 264/676 (39%), Positives = 396/676 (58%), Gaps = 26/676 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG K + L+K+ N + DLLF+ P + DR I ++ Sbjct: 9 PLTSLTGVGAKVAEKLAKV----GLNSVQ--DLLFHLPLRYEDRTRIYPIVKLHAGLWAA 62 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + KR+ + ++DG G ITL FF T +KN F EG+ + G+IK+ Sbjct: 63 VQGKVMSVDTL-FGKRKMLTVKISDGNGTITLRFF-NFTAAMKNNFAEGKTVHAYGEIKR 120 Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186 + +VHP Y F+ S +V L VY GL + + +AL L + Sbjct: 121 GGYGLEIVHPDYKFYAPNQSAEVEQSLT-PVYPTTDGLRQITLRNLTDQALELLDKAAVQ 179 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLL 242 E + L ++ ++ +A + IH P + D + PA+ RL +ELLA +++L Sbjct: 180 ELLPSGLYDHQT--TLTQALHTIHRPPPSIDLDQFDQGKHPAQIRLIIEELLAQNLSMLS 237 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R + +++ +P+ V K+ Q++L +PFSPT +Q +++I QD+ + + M+R++QGDV Sbjct: 238 VRSKGQQDAALPLPVANKLKQQLLDQLPFSPTNAQSRVVEEIEQDLVKPHPMMRLVQGDV 297 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+E G Q +MAP +LA+QH + + I V + G + Sbjct: 298 GSGKTLVAALAALRALEHGYQVALMAPTELLAEQHAINFANWFEPMGIKVGWLAGKLKGK 357 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 + L +IA G+A +++GTHALFQ+ +++ L LVI+DEQHRFGV QRL+L +K Sbjct: 358 AKEAELTKIASGEAQMVVGTHALFQEHVEFDHLALVIIDEQHRFGVHQRLELREKGAKQG 417 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + D+++ER++ Sbjct: 418 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNA 477 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L+EGK+AYW+C I+E + ++ + L I ++HGRM +K++VM Sbjct: 478 CLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQD 537 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK+ LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C+LLY Sbjct: 538 FKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLY 597 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 H PLSK + RL VL+ + DGF+IA+ DL+ R GE+LG KQ+GM F IA L+ Sbjct: 598 HSPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGMADFKIADLVRDQRLI 657 Query: 657 EIARKDAKHILTQDPD 672 ++ A+HI PD Sbjct: 658 PEVQRIARHIHDNYPD 673 >gi|330447151|ref|ZP_08310801.1| ATP-dependent DNA helicase RecG [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491342|dbj|GAA05298.1| ATP-dependent DNA helicase RecG [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 693 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 264/674 (39%), Positives = 393/674 (58%), Gaps = 24/674 (3%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L GVG K + L KI N DLLF+ P + DR I+ + +T+ Sbjct: 11 LGELSGVGAKMAEKLEKI-GLNNVQ-----DLLFHLPLRYEDRTRIWPINRAMPGQHLTV 64 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G + H+S KR+ + + DGTG +TL FF M KN F EG+++ G+IK Sbjct: 65 QGEV-HHTSITFGKRKMLAVKIGDGTGSVTLRFFNFNAAM-KNSFAEGKQVKAYGEIKGS 122 Query: 133 KNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPEW 188 K + ++HP Y IF +++ + VY GL + + +AL+ L + E Sbjct: 123 KFGLEIIHPDYRIFSEPTELSVEETLTPVYPTTDGLRQLTLRNLTDQALNLLDKAAVTEL 182 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMR 244 + + L ++ ++A+A ++H P + PA+ RL +ELLA +++L +R Sbjct: 183 LPEGLYDRQM--TLAQALRLMHRPTPDISLDQLDAGKHPAQHRLILEELLAQNLSMLALR 240 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 + ++ P+ + + Q++L ++PFSPT +Q+ + DI D+++ M+R++QGDVGS Sbjct: 241 SKGQQHNAWPLAAKDTLKQQLLDSLPFSPTGAQQRVVADIETDLAKAQPMMRLVQGDVGS 300 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKTLVA +A A+E G Q +MAP +LA+QH + I V + G + R Sbjct: 301 GKTLVAALAALRAIEHGYQVALMAPTELLAEQHAINFANWLNPMGIQVGWLAGKLKGKAR 360 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---- 420 L RI G+ +++GTHALFQD +++ L LVI+DEQHRFGV QRL+L +K Sbjct: 361 ETELTRITSGEVKMVVGTHALFQDHVKFDNLALVIIDEQHRFGVHQRLELREKGANDGRY 420 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VVL 479 PH L+MTATPIPRTL +T+ D+D S I E P GR PI+TV +P R E+IER++ L Sbjct: 421 PHQLVMTATPIPRTLAMTAYADMDTSIIDELPPGRTPIQTVALPDARRAEIIERIRSACL 480 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538 +EG++AYW+C I+E + ++ + + L I ++HGRM +K++VM SFK Sbjct: 481 NEGRQAYWVCTLIDESEVLEAQAASDTADELTGLLPDLKIGLVHGRMKAQEKQAVMASFK 540 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G LL+ATTVIEVG+DV +AS+++IEN E GLAQLHQLRGRVGRG+ S C+LLYH Sbjct: 541 AGELDLLVATTVIEVGVDVPNASLMVIENPERLGLAQLHQLRGRVGRGKVASHCVLLYHA 600 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PLSK + RL VL+ + DGF+IA+ DL+ R GE+LG KQ+G+ +F +A L+ Sbjct: 601 PLSKTAQKRLGVLRESSDGFVIAQRDLEIRGPGELLGTKQTGIAEFKVADLIRDQYLIPQ 660 Query: 659 ARKDAKHILTQDPD 672 +K A++I PD Sbjct: 661 VQKLARYIHDNYPD 674 >gi|253997768|ref|YP_003049831.1| ATP-dependent DNA helicase RecG [Methylovorus sp. SIP3-4] gi|253984447|gb|ACT49304.1| ATP-dependent DNA helicase RecG [Methylovorus sp. SIP3-4] Length = 683 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 264/669 (39%), Positives = 379/669 (56%), Gaps = 36/669 (5%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLL + P ++D I ++ + G I H+ Q + R+ L D +G +T Sbjct: 28 DLLLHLPLRYVDETRVTPIRDLRLGEQAQVEGEII-HAEVQYKPRKALIARLQDASGILT 86 Query: 103 LLF--FY-RKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159 L F FY + LK EG ++ G+++ MVHP + V Sbjct: 87 LRFLNFYPSQIAALK----EGNRLRALGEVRNGFFGYEMVHPQCKPVREGAAVKQTLTPV 142 Query: 160 YSLPTGLSVDLFKKIIVEAL---SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216 Y GLS +K I AL S +LP + Q K++P ++ +H P Sbjct: 143 YPTTAGLSQPSLRKWIGRALETASHDELLP----AKVYQGKAWPDFQQSLLQLHYPPPDA 198 Query: 217 DF----EWTSPARERLAYDELLAGQIALLLMRKQF--KKEIGIP-INVEGKIAQKILRNI 269 D E T+PA +RLA+DELLA QI+ MRK + ++ +G P + K+ +L+++ Sbjct: 199 DQHALQEKTTPAWQRLAFDELLAQQIS---MRKHYARRRGLGAPAMPPSKKLVSALLKSL 255 Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T +Q+ DI D+ + M R+LQGDVGSGKT+VA +A A+E G QA IMAP Sbjct: 256 PFGLTAAQQRVFTDIQHDLGRSYPMQRLLQGDVGSGKTIVAAMAALQAIEHGWQAAIMAP 315 Query: 330 IGILAQQHYEFIKKYTQN-----TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384 ILA+QH+ + + QN + V + G+ + R +AL I+ G+A ++IGTHA Sbjct: 316 TEILAEQHFNKLNTWLQNLAAGAAPVRVVWVAGSQGKKARAEALAAISSGEAQLVIGTHA 375 Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444 +FQD +Q+ +L LV+VDEQHRFGVQQRL L QK PH L+M+ATPIPRTL ++ D+D Sbjct: 376 VFQDQVQFARLGLVVVDEQHRFGVQQRLALRQKGAQPHQLMMSATPIPRTLSMSYFADLD 435 Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504 +S I E P GR P+ T ++ R +EV ER++ S+G++AYW+CP IEE + ++ V Sbjct: 436 VSVIDELPPGRTPVVTKLVSDARREEVFERVRAACSQGRQAYWVCPLIEESEALQLQTAV 495 Query: 505 ERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + +L E F + ++HGRM DK++VM +F LL+ATTVIEVG+DV +AS++ Sbjct: 496 DTHIALQEAFPELQVGLVHGRMKPADKQAVMQAFAANQIHLLVATTVIEVGVDVPNASLM 555 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623 +IE+AE GL+QLHQLRGRVGRG S+CILLY PLS+ + RL ++ + DGF IA+ Sbjct: 556 VIEHAERMGLSQLHQLRGRVGRGAASSACILLYQTPLSETARARLKIIYESSDGFEIAQA 615 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683 DL R GE +GI+QSG P IA E LLE A+ A +L + P Q Sbjct: 616 DLHLRGPGEFMGIRQSGTPMLKIADLERDAGLLEEAQAMADWLLQKHPQAAEAHLQR--- 672 Query: 684 LLYLYQYNE 692 +L+Q E Sbjct: 673 --WLHQAQE 679 >gi|152989714|ref|YP_001351438.1| ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa PA7] gi|150964872|gb|ABR86897.1| ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa PA7] Length = 691 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 258/678 (38%), Positives = 387/678 (57%), Gaps = 24/678 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +GVG + L+++ ET D+LF+ P + DR I + Sbjct: 8 PVTALKGVGAALAEKLARV-----GLET-LQDILFHLPLRYQDRTRVTAIGALRPGADAV 61 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G ++ + + +RR + L DG+G ++L FY ++ K+ G + G+++ Sbjct: 62 VEGVVAS-ADVVMGRRRSLLVRLQDGSGTLSL-RFYHFSQAQKDGLKRGTHLRCYGEVRP 119 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186 + + + HP Y N D P+ + +Y GL+ +++ +AL+ L LP Sbjct: 120 GASGLEIYHPEYRALNG-DEPIPVEQTLTPIYPTTEGLTQQRLRQLSQQALALLGPSSLP 178 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE----RLAYDELLAGQIALLL 242 +W+ +L + + +A +H P D E + R RLA++ELL Q++L Sbjct: 179 DWLPAELARDYQLGPLDQAIRYLHRPPPDADIEELAEGRHWAQLRLAFEELLTHQLSLQR 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R+ + + + ++ Q+ L N+ F PT +Q +I D++Q MLR++QGDV Sbjct: 239 LREAVRSQAAPRLPPARRLPQQFLANLGFQPTGAQRRVGAEIAYDLAQDEPMLRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 G+GKT+VA +A A+EAG Q +MAP ILA+QH+ K+ Q I V + G + Sbjct: 299 GAGKTVVAALAALQAIEAGYQVALMAPTEILAEQHFVNFGKWLQPLGIEVAWLAGKLKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--- 419 R ALERI G A +++GTHALFQD +++ +L L I+DEQHRFGVQQRL L QK Sbjct: 359 ARAAALERIGDG-APMVVGTHALFQDEVKFKRLALAIIDEQHRFGVQQRLALRQKGVDGR 417 Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH L+MTATPIPRTL +++ D+D S + E P GR P+ TV++ +R EVIER++ Sbjct: 418 LCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRIEVIERVRAA 477 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 EG++AYW+C IEE +E ++ + L + +IHGRM DK VM++F Sbjct: 478 CREGRQAYWVCTLIEESEELTCQAAETTYEELSSALGELRVGLIHGRMKPADKAVVMEAF 537 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 K G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLYH Sbjct: 538 KEGMLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYH 597 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PPLS+ RL +++ T DGFLIAE+DL+ R GE+LG +Q+G+ +F +A LL Sbjct: 598 PPLSQIGRERLGIMRETSDGFLIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLP 657 Query: 658 IARKDAKHILTQDPDLTS 675 R A+ +L P S Sbjct: 658 AVRDAAQSLLAHWPQHVS 675 >gi|77361708|ref|YP_341283.1| ATP-dependent DNA helicase [Pseudoalteromonas haloplanktis TAC125] gi|76876619|emb|CAI87841.1| ATP-dependent DNA helicase recG [Pseudoalteromonas haloplanktis TAC125] Length = 673 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 256/646 (39%), Positives = 379/646 (58%), Gaps = 24/646 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 D+LF+ P + DR I+E+S V++ I + S KRR +NDGTG +T Sbjct: 15 DMLFHLPLRYEDRTRLYTINELSLHSHVSVEATI-ETSQITFGKRRMLVCQINDGTGRLT 73 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVY 160 L FF T KN G+ I G++++ + M HP Y ++ + + VY Sbjct: 74 LRFF-NFTAAQKNALSAGKIIRCFGEVRRGRVGFEMNHPEYSISDTPNEQPTATTLTPVY 132 Query: 161 SLPTGLSVDLFKKIIVEALS--RLPVLPEWIEKDLLQKKSFPS---IAEAFNIIHNPRKA 215 S GL K++ + ALS + +L ++ ++LL + PS +++A ++H P K Sbjct: 133 STTEGL-----KQLSIRALSDQAINLLQKYSVEELLPAQWQPSNLGLSDALLLLHRPPKD 187 Query: 216 KDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271 D + T PA++RL ++ELLA ++LL +R+Q ++ + +N + + L +PF Sbjct: 188 IDVIALEQGTHPAQQRLVFEELLAQNLSLLKIRQQGQQVKAVSLNSNNALESQFLAQLPF 247 Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331 PT +Q + +I D+ Q M+R++QGDVGSGKTLVA ++ A+ G Q +MAP Sbjct: 248 DPTNAQSRVVAEIKGDLQQPYPMMRLVQGDVGSGKTLVAALSALTAIAQGFQVALMAPTE 307 Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391 IL++QH + I V + G R LE+IA G+A +I+GTHALFQD ++ Sbjct: 308 ILSEQHGINFNNWFNQLGITVAWLGGKTKGRERVATLEKIASGEAQMIVGTHALFQDEVK 367 Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKA----TAPHVLLMTATPIPRTLVLTSLGDIDISK 447 ++ L+L+I+DEQHRFGV QRL L +K PH L+MTATPIPRTL +T+ D++ S Sbjct: 368 FHNLVLIIIDEQHRFGVHQRLSLREKGRFGDCYPHQLVMTATPIPRTLAMTAYADLETSV 427 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE-GKKAYWICPQIEEKKESNFRSVVER 506 I E P GR PI TV +P R ++I+R+K+ E G++ YW+C I+E + ++ + Sbjct: 428 IDELPPGRTPITTVALPDTRRGDIIKRVKLACHEQGRQVYWVCTLIDESEVLQCQAAEDS 487 Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 L E ++++IHGRM +K+++M FK G +L+ATTVIEVG+DV +AS+III Sbjct: 488 AQQLKEALPELNVSLIHGRMKATEKQAIMSEFKAGNIHVLVATTVIEVGVDVPNASLIII 547 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625 EN E GLAQLHQLRGRVGRG S C+LLYH PLS + RL VL+++ DGF+IAE DL Sbjct: 548 ENPERLGLAQLHQLRGRVGRGATASHCVLLYHAPLSHTAQKRLGVLRDSNDGFVIAERDL 607 Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671 + R GE+LG KQ+G+ +F IA L R A+ +L Q P Sbjct: 608 EIRGPGEVLGTKQTGLAEFKIADLTRDKHTLNQVRPIAQQMLIQHP 653 >gi|15600538|ref|NP_254032.1| ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa PAO1] gi|107104447|ref|ZP_01368365.1| hypothetical protein PaerPA_01005524 [Pseudomonas aeruginosa PACS2] gi|116053492|ref|YP_793819.1| ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa UCBPP-PA14] gi|218894448|ref|YP_002443318.1| ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa LESB58] gi|296392205|ref|ZP_06881680.1| ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa PAb1] gi|313106773|ref|ZP_07792989.1| ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa 39016] gi|9951664|gb|AAG08730.1|AE004946_14 ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa PAO1] gi|115588713|gb|ABJ14728.1| ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa UCBPP-PA14] gi|218774677|emb|CAW30494.1| ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa LESB58] gi|310879491|gb|EFQ38085.1| ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa 39016] Length = 691 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 256/678 (37%), Positives = 387/678 (57%), Gaps = 24/678 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +GVG + L+++ ET D+LF+ P + DR I + Sbjct: 8 PVTALKGVGAALAEKLARV-----GLET-LQDILFHLPLRYQDRTRVTAIGALRPGADAV 61 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G ++ + + +RR + L DG+G ++L FY ++ K+ G + G+++ Sbjct: 62 VEGVVA-GADVVMGRRRSLLVRLQDGSGTLSL-RFYHFSQAQKDGLKRGTHLRCYGEVRP 119 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186 + + + HP Y N D P+ + +Y GL+ +++ +AL+ L LP Sbjct: 120 GASGLEIYHPEYRALNG-DEPIPVEQTLTPIYPTTEGLTQQRLRQLSQQALAMLGPSSLP 178 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE----RLAYDELLAGQIALLL 242 +W+ +L + + +A +H P D E + R RLA++ELL Q++L Sbjct: 179 DWLPAELARDYQLGPLDQAIRYLHRPPPDADIEELAEGRHWAQLRLAFEELLTHQLSLQR 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R+ + + + ++ ++ L N+ F PT +Q +I D++Q MLR++QGDV Sbjct: 239 LREAVRSQAAPRLPAASRLPKRFLANLGFQPTGAQRRVGAEIAYDLAQDEPMLRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 G+GKT+VA +A A+EAG Q +MAP ILA+QH+ K+ Q I V + G + Sbjct: 299 GAGKTVVAALAALQAIEAGYQVALMAPTEILAEQHFLNFSKWLQPLDIEVAWLAGKLKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--- 419 R ALERI G A +++GTHALFQD +++ +L L I+DEQHRFGVQQRL L QK Sbjct: 359 ARAAALERIGDG-APMVVGTHALFQDEVKFKRLALAIIDEQHRFGVQQRLALRQKGVDGR 417 Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH L+MTATPIPRTL +++ D+D S + E P GR P+ TV++ +R EVIER++ Sbjct: 418 LCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRIEVIERVRAA 477 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 EG++AYW+C IEE +E ++ + L + +IHGRM DK VM++F Sbjct: 478 CREGRQAYWVCTLIEESEELTCQAAETTYEELSSALGELRVGLIHGRMKPADKAVVMEAF 537 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 K G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLYH Sbjct: 538 KEGMLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYH 597 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PPLS+ RL +++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A LL Sbjct: 598 PPLSQIGRERLGIMRETSDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLP 657 Query: 658 IARKDAKHILTQDPDLTS 675 R A+ +L P S Sbjct: 658 AVRDAAQSLLAHWPQHVS 675 >gi|163802262|ref|ZP_02196157.1| osmolarity sensor protein [Vibrio sp. AND4] gi|159174067|gb|EDP58877.1| osmolarity sensor protein [Vibrio sp. AND4] Length = 693 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 262/670 (39%), Positives = 395/670 (58%), Gaps = 26/670 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG K + L+K+ DLLF+ P + DR I+++ Sbjct: 10 PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G + + KR+ + ++DG G ITL FF T +KN F +G+ + G+IK+ Sbjct: 64 IQGKVMAVDTI-FGKRKMLTVKISDGNGTITLRFF-NFTAAIKNNFSQGKLVHAYGEIKR 121 Query: 132 LKNRIIMVHPHYIFH-NSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + MVHP Y F+ N Q + + VY GL + + +ALS +L + Sbjct: 122 GSMGLEMVHPDYKFYANEQKSDAEQSLTPVYPTTDGLRQITLRNLTEQALS---LLDKAA 178 Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242 ++LL + ++++A + IH P + E PA+ RL +ELLA +++L Sbjct: 179 VQELLPAGLYDHQITMSQALHTIHRPPPKINLDEFDEGKHPAQIRLIMEELLAQNLSMLA 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R + +++I +P+ + +++L +PFSPT +Q +K+I D+ + + M+R++QGDV Sbjct: 239 VRSKGQQDIALPLASCDSLKKQLLDQLPFSPTNAQARVVKEIEADLEKAHPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A A+E G Q +MAP +LA+QH + + I V + G + Sbjct: 299 GSGKTLVAALAAARAIEHGYQVALMAPTELLAEQHAINFANWFEKMGIQVGWLAGKLKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R L IA G+A +++GTHALFQ+ + ++ L LVI+DEQHRFGV QRL+L +K Sbjct: 359 AREAELACIASGEAQMVVGTHALFQEHVAFHHLALVIIDEQHRFGVHQRLELREKGAKQG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + D+++ER++ Sbjct: 419 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRSA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L+EGK+AYW+C I+E + ++ + L I ++HGRM +K++VM + Sbjct: 479 CLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQN 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK+ LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLY Sbjct: 539 FKDNQLHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 H PLSK + RL VL+ + DGF+IA++DL+ R GE+LG KQ+G+ F IA L+ Sbjct: 599 HSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIADLVRDQRLI 658 Query: 657 EIARKDAKHI 666 ++ A+HI Sbjct: 659 PEVQRIARHI 668 >gi|114321587|ref|YP_743270.1| ATP-dependent DNA helicase RecG [Alkalilimnicola ehrlichii MLHE-1] gi|114227981|gb|ABI57780.1| ATP-dependent DNA helicase RecG [Alkalilimnicola ehrlichii MLHE-1] Length = 705 Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust. Identities = 247/654 (37%), Positives = 382/654 (58%), Gaps = 21/654 (3%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 +P P++ RGVG + + L+++ + DLLF+ P + DR ++ + Sbjct: 16 DPAGQPITALRGVGPQLAERLARL------HLATVQDLLFHLPLRYEDRDTVRRLGALRP 69 Query: 67 ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 + G + +H+ +R+ + ++DGTG L+FF+ + G I Sbjct: 70 GESGVVIGRV-EHAGIAEGRRKRLIVQISDGTGSADLVFFHFHPGQ-RQQMRPGTPIRCF 127 Query: 127 GKIKKLKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183 G+++ MVHP Y ++ D + VY GL +K+I +AL+ Sbjct: 128 GELRPGPTGPQMVHPEYRLGPRASAGDEGPHGLTPVYPTTQGLHQQTLRKLIDQALALAR 187 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIA 239 +P+W+ +L ++ P++AEA +H P D E P +RLA +ELLA ++ Sbjct: 188 HMPDWLPAELTRELGLPALAEALYYVHKPPVDADTAPLVEGRHPCVQRLAVEELLAHHLS 247 Query: 240 LLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 + +R + P I+ +G++ +++L ++PF+ T++Q +++ +DM++ MLR++ Sbjct: 248 MRRLRAHLQAAADAPTIHGDGRLTRRLLDSLPFALTEAQRRVDRELAEDMTRSVPMLRLV 307 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKT+VA +A AVEAG QA IMAP +LA+QH+ ++ I V ++G Sbjct: 308 QGDVGSGKTVVAALAALRAVEAGYQAAIMAPTELLAEQHWRSFNEWLAPLDIPVGWVSGR 367 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R L +A G +++GTHALFQD +++ L LVIVDEQHRFGV QRL L +K Sbjct: 368 AAGRRREAMLAALAAGDYPVVVGTHALFQDDVRFQALGLVIVDEQHRFGVHQRLALKEKG 427 Query: 419 ----TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 + PH ++MTATPIPRTL +T+ D+D+S I + P GRKP+KTV + R DEV+ R Sbjct: 428 HRGRSQPHQIIMTATPIPRTLAMTAYADLDVSVIDQLPPGRKPVKTVAVSETRRDEVVAR 487 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533 + L++G++AYW+C IE+ + ++ E + +L + ++HGRM DK++V Sbjct: 488 IGAALAQGRQAYWVCTLIEDSEVLEAQAAEETYAALQAALPGHRVGLVHGRMKPADKDTV 547 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M F G LL+ATTVIEVG++V +AS++IIENAE GLAQLHQLRGRVGRGE SSC+ Sbjct: 548 MADFAAGRIGLLVATTVIEVGVNVPNASLMIIENAERLGLAQLHQLRGRVGRGEAESSCV 607 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 L+YH PLS+ + RL VL+ + DGF IA DL+ R GE+LG +Q+G + +A Sbjct: 608 LMYHGPLSQAARARLEVLRRSNDGFEIARRDLEIRGPGELLGTRQTGELSYRVA 661 >gi|229593368|ref|YP_002875487.1| ATP-dependent DNA helicase RecG [Pseudomonas fluorescens SBW25] gi|229365234|emb|CAY53538.1| ATP-dependent DNA helicase [Pseudomonas fluorescens SBW25] Length = 691 Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust. Identities = 259/683 (37%), Positives = 397/683 (58%), Gaps = 36/683 (5%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 ++ +GVG+ + L+K+ G N D+LF+ P + DR I ++ + + Sbjct: 9 VTALKGVGEAMAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRVVPIGQLRPGQDAVV 62 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G +S + + KRR + L DGTG ++L FY + K G ++ G+ + Sbjct: 63 EGTVS-GADVVMGKRRSLVVRLQDGTGGLSL-RFYHFSNAQKEGLKRGTRVRCYGEARPG 120 Query: 133 KNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPEW 188 + + + HP Y I + + +Y L GL+ +++ ++ L+ L LP+W Sbjct: 121 ASGLEIYHPEYRAITGDEPPPVDTTLTPIYPLTEGLTQQRLRQLCMQTLTMLGPKSLPDW 180 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIALL 241 + ++L + + +A +H+P D + W A+ RLA++ELL Q++ Sbjct: 181 LPEELARDYQLAPLDDAIRYLHHPPADADVDELALGHHW---AQHRLAFEELLTHQLSQQ 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R+ + + ++ + L N+ F+PT +Q+ +I D+SQK MLR++QGD Sbjct: 238 RLRESMRSLRAPAMPKATRLPAQYLANLGFAPTGAQQRVGNEIAYDLSQKEPMLRLIQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKT+VA +A A+EAG Q +MAP ILA+QH+ K++ + + V + G + Sbjct: 298 VGAGKTVVAALAALQALEAGYQVALMAPTEILAEQHFITFKRWLEPLGLEVAWLAGKLKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 +R ALE+IA G A +++GTHALFQD +Q+ L LVI+DEQHRFGVQQRL L QK Sbjct: 358 KNRASALEQIAGG-APMVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRQKGVGG 416 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 PH L+MTATPIPRTL +++ D+D S + E P GR P+ TV++ R EVIER++ Sbjct: 417 RMNPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVTDTRRVEVIERVRG 476 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-----IAIIHGRMSDIDKES 532 +EG++AYW+C IEE +E ++ + +E TS+ + +IHGRM +K + Sbjct: 477 ACAEGRQAYWVCTLIEESEELTCQAA----ETTYEDLTSALGELKVGLIHGRMKPAEKAA 532 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 VM FK G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C Sbjct: 533 VMAEFKAGNLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASHC 592 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +LLYHPPLS+ RL +++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A Sbjct: 593 VLLYHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRD 652 Query: 653 DSLLEIARKDAKHILTQDPDLTS 675 LL R A+ +L + P+ S Sbjct: 653 ADLLPAVRDAAQALLERWPEHVS 675 >gi|303251147|ref|ZP_07337331.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253511|ref|ZP_07535381.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302649998|gb|EFL80170.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859012|gb|EFM91055.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 693 Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust. Identities = 270/678 (39%), Positives = 387/678 (57%), Gaps = 26/678 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+ GVG + LS+I N DLLF+ P + DR I ++ E T Sbjct: 10 PLTALSGVGAAIAEKLSRI-GINNVQ-----DLLFHLPYRYEDRTRITPIIDVRPESFST 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G I Q + Q +R +L+DGT +ITL FF M KN G ++ G+IK+ Sbjct: 64 IEG-IVQVTEVQFGRRPILSTVLSDGTSKITLKFFNFNAGM-KNSLAAGTRVKAFGEIKR 121 Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + + HP Y I N+Q + + +YS GL + +K+ +AL+ +L + Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQNSLRKLTEQALA---LLDKIK 178 Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALLL 242 +LL + P S+ EA ++H P AK E PA++RL ++ELLA +A+ Sbjct: 179 VGELLPDEYNPHKYSLKEALQLLHRPPPDISAKQLEKGDHPAQKRLIFEELLAHNLAMQQ 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R + P+ + + + L ++PF PT +Q DI QD+++ + M+R++QGDV Sbjct: 239 VRVGVNQLAAAPLRYQTDLKSRFLASLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A++ G Q +MAP ILA+QH + + I V + G + Sbjct: 299 GSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R LE I +G+ +IIGTHALFQ+S++++ L LVI+DEQHRFGV QRL L +K Sbjct: 359 ARTAQLEAIKNGEVQMIIGTHALFQESVEFHNLALVIIDEQHRFGVHQRLTLREKGAKDG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH L+MTATPIPRTL +T D+D S I E P GR PI TV I +R DE++ R+ Sbjct: 419 IYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAA 478 Query: 479 L-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 +E ++AYW+C I+E + ++ L I ++HGRM +K+ +M Sbjct: 479 CKNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQEIMAE 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK LL+ATTVIEVG+DV +AS++IIEN+E GLAQLHQLRGRVGRG S C+LLY Sbjct: 539 FKAANIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PPL K S RL VL++++DGF IAE+DL+ R GEILG KQ+GM +F +A ++ Sbjct: 599 KPPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVANLMRDRKMI 658 Query: 657 EIARKDAKHILTQDPDLT 674 + + AK I+ Q+P L Sbjct: 659 PLVQNYAKQIIQQNPPLA 676 >gi|89076059|ref|ZP_01162419.1| putative ATP-dependent DNA helicase RecG [Photobacterium sp. SKA34] gi|89048211|gb|EAR53793.1| putative ATP-dependent DNA helicase RecG [Photobacterium sp. SKA34] Length = 693 Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust. Identities = 265/674 (39%), Positives = 393/674 (58%), Gaps = 24/674 (3%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L+ GVG K + L KI G N DLLF+ P + DR I+ + +T+ Sbjct: 11 LAELSGVGAKMAEKLEKI---GLHN---VQDLLFHLPLRYEDRTRIWPINRAMPGQHLTV 64 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G + H+S KR+ + + DGTG +TL FF M KN F EG+++ G+IK Sbjct: 65 QGEV-HHTSITFGKRKMLAVKIGDGTGSVTLRFFNFNAAM-KNSFAEGKQVKAYGEIKGS 122 Query: 133 KNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPEW 188 K + ++HP Y IF +++ + VY GL + + +AL+ L + E Sbjct: 123 KFGLEIIHPDYRIFSEPTELSVEETLTPVYPTTDGLRQLTLRNLTDQALNLLDKAAVTEL 182 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMR 244 + + L ++ ++A+A +H P + PA+ RL +ELLA +++L +R Sbjct: 183 LPEGLYDRQM--TLAQALRAMHRPTPDISLDQLEAGKHPAQHRLILEELLAQNLSMLALR 240 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 + ++ P+ + + Q++L ++PFSPT +Q+ + DI D+ + M+R++QGDVGS Sbjct: 241 SKGQQHSAWPLAAKDSLKQQLLNSLPFSPTGAQQRVVADIEADLIKPQPMMRLVQGDVGS 300 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKTLVA +A A+E G Q +MAP +LA+QH + I V + G + R Sbjct: 301 GKTLVAALAALRAIEHGFQVALMAPTELLAEQHAINFANWFNPMGIQVGWMAGKLKGKAR 360 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---- 420 L RIA G+ +++GTHALFQD +++ L LVI+DEQHRFGV QRL+L +K Sbjct: 361 ETELARIASGEVKMVVGTHALFQDHVKFENLALVIIDEQHRFGVHQRLELREKGANEGRY 420 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LKVVL 479 PH L+MTATPIPRTL +T+ D+D S I E P GR PI+TV +P R E+IER L + Sbjct: 421 PHQLVMTATPIPRTLAMTAYADMDTSVIDELPPGRTPIQTVALPDARRPEIIERILSACV 480 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538 +EG++AYW+C I+E + ++ + + L I ++HGRM +K++VM SFK Sbjct: 481 NEGRQAYWVCTLIDESEVLEAQAASDTADELTGLLPDLKIGLVHGRMKAAEKQAVMASFK 540 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G LL+ATTVIEVG+DV +AS+++IEN E GLAQLHQLRGRVGRG+ S C+LLYH Sbjct: 541 AGELNLLVATTVIEVGVDVPNASLMVIENPERLGLAQLHQLRGRVGRGKVASHCVLLYHA 600 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PLSK + RL VL+ + DGF+IA+ DL+ R GE+LG KQ+G+ +F +A ++ Sbjct: 601 PLSKTAQKRLGVLRESSDGFVIAQRDLEIRGPGELLGTKQTGIAEFKVADLIRDQYMIPQ 660 Query: 659 ARKDAKHILTQDPD 672 +K A++I PD Sbjct: 661 VQKLARYIHDSYPD 674 >gi|58697197|ref|ZP_00372606.1| ATP-dependent DNA helicase RecG [Wolbachia endosymbiont of Drosophila simulans] gi|58536484|gb|EAL59876.1| ATP-dependent DNA helicase RecG [Wolbachia endosymbiont of Drosophila simulans] Length = 559 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 246/567 (43%), Positives = 341/567 (60%), Gaps = 14/567 (2%) Query: 42 IDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101 +DLLFY P S++DR +++ E +T + +H S + RPYKI++ + I Sbjct: 1 MDLLFYRPLSYVDRSKSLPDAQVGE--FITFIAKVYEHQSPTF-RGRPYKIVVESESQYI 57 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN----FPLIE 157 ++FF + L +F G + ++GK++K + HP Y+ S D+N IE Sbjct: 58 FIVFFNYSVKYLYKLFPIGASVIISGKLEKFAEHWQITHPDYV---SLDINQFKKIACIE 114 Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 VY L G++ II L LP LPEWI+ L+++K + S E+ +H P + Sbjct: 115 PVYQLCRGITNKRIGNIISSNLKELPDLPEWIDDTLIKQKKWLSWRESIIKLHRPSSLAE 174 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 E R+RLAYDEL A Q+AL L RK KE G + K +++L + F T Q Sbjct: 175 AE---VCRKRLAYDELFAYQLALKLARKNHVKERGREFIILSKYKEQVLNELSFQLTNDQ 231 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 AI +I + K RM+ +LQGDVGSGKT+VAL AM VE QA +MAP ILA+QH Sbjct: 232 TRAIDEISERQKSKYRMISLLQGDVGSGKTVVALFAMINVVENNMQAALMAPTTILAEQH 291 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y +I++ T I V ++TG + R+ + +A G +I+IGTHALFQ ++ + L L Sbjct: 292 YNWIEEVLSCTDIKVALLTGKTSRKERKIIMNELASGVLNIVIGTHALFQANVTFKNLGL 351 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 ++DEQ RFGV QR +L K +L +TATPIPRTL GD++ S + EKP R P Sbjct: 352 AVIDEQQRFGVMQRNRLVGKGENADILFVTATPIPRTLQQAMYGDVECSILKEKPKSRLP 411 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517 IKTV + I+R+ +VIE+LK ++ G+KAYWICP IEE +E+N + RF L + F Sbjct: 412 IKTVTMNISRVPDVIEKLKGAINRGEKAYWICPYIEENEETNIAAAEMRFQELQKTFLDK 471 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 + IIHG+++ K+ VM SFK LL+ATTVIEVGIDV DA+I+IIENAE FGL+QLH Sbjct: 472 VGIIHGKLTQEQKDQVMFSFKRNEFSLLVATTVIEVGIDVPDATIMIIENAEQFGLSQLH 531 Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNS 604 QLRGRVGRG + S C+LLY LSK+S Sbjct: 532 QLRGRVGRGNKPSFCVLLYD-NLSKSS 557 >gi|90581395|ref|ZP_01237190.1| putative ATP-dependent DNA helicase RecG [Vibrio angustum S14] gi|90437372|gb|EAS62568.1| putative ATP-dependent DNA helicase RecG [Vibrio angustum S14] Length = 693 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 264/674 (39%), Positives = 394/674 (58%), Gaps = 24/674 (3%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L+ GVG K + L KI G N DLLF+ P + DR I+ + +T+ Sbjct: 11 LAELSGVGAKMAEKLEKI---GLHN---VQDLLFHLPLRYEDRTRIWPINRAMPGQHLTV 64 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G + H+S KR+ + + DGTG +TL FF M KN F EG+++ G+IK Sbjct: 65 QGEV-HHTSITFGKRKMLAVKIGDGTGSVTLRFFNFNAAM-KNSFAEGKQVKAYGEIKGS 122 Query: 133 KNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPEW 188 K + ++HP Y IF +++ + VY GL + + +AL+ L + E Sbjct: 123 KFGLEIIHPDYRIFSEPTELSVEETLTPVYPTTDGLRQLTLRNLTDQALNLLDKAAVTEL 182 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMR 244 + + L ++ ++A+A +H P + PA+ RL +ELLA +++L +R Sbjct: 183 LPEGLYDRQM--TLAQALRAMHRPTPDISLDQLEAGKHPAQHRLILEELLAQNLSMLALR 240 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 + ++ P+ + + Q++L ++PFSPT +Q+ + DI D+ + M+R++QGDVGS Sbjct: 241 SKGQQHSAWPLAAKDSLKQQLLDSLPFSPTGAQQRVVADIEADLIKPQPMMRLVQGDVGS 300 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKTLVA +A A+E G Q +MAP +LA+QH + I V + G + R Sbjct: 301 GKTLVAALAALRAIEHGFQVALMAPTELLAEQHAINFANWLNPMGIQVGWMAGKLKGKAR 360 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---- 420 L RIA G+ +++GTHALFQD +++ L LVI+DEQHRFGV QRL+L +K Sbjct: 361 ETELARIASGEVKMVVGTHALFQDHVKFENLALVIIDEQHRFGVHQRLELREKGANDGRY 420 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VVL 479 PH L+MTATPIPRTL +T+ D+D S I E P GR PI+TV +P R E+IER++ + Sbjct: 421 PHQLVMTATPIPRTLAMTAYADMDTSVIDELPPGRTPIQTVALPDARRPEIIERIRSACV 480 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538 +EG++AYW+C I+E + ++ + + L I ++HGRM +K++VM SFK Sbjct: 481 NEGRQAYWVCTLIDESEVLEAQAASDTADELTGLLPDLKIGLVHGRMKAAEKQAVMASFK 540 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G LL+ATTVIEVG+DV +AS+++IEN E GLAQLHQLRGRVGRG+ S C+LLYH Sbjct: 541 AGELDLLVATTVIEVGVDVPNASLMVIENPERLGLAQLHQLRGRVGRGKVASHCVLLYHA 600 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PLSK + RL VL+ + DGF+IA+ DL+ R GE+LG KQ+G+ +F +A ++ Sbjct: 601 PLSKTAQKRLGVLRESSDGFVIAQRDLEIRGPGELLGTKQTGIAEFKVADLIRDQYMIPQ 660 Query: 659 ARKDAKHILTQDPD 672 +K A++I PD Sbjct: 661 VQKLARYIHDSYPD 674 >gi|300113780|ref|YP_003760355.1| ATP-dependent DNA helicase RecG [Nitrosococcus watsonii C-113] gi|299539717|gb|ADJ28034.1| ATP-dependent DNA helicase RecG [Nitrosococcus watsonii C-113] Length = 713 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 255/652 (39%), Positives = 378/652 (57%), Gaps = 21/652 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L P++T +GVG + L+++ C + DLLF+ P + DR IS + + R Sbjct: 26 LATPVTTLKGVGPSLANRLARLGLC------KVQDLLFHLPQRYQDRTRVAPISLLQKGR 79 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 I G I Q + +R+ L+D TG+I L FF+ + +N+ G ++ G+ Sbjct: 80 EALIEGEI-QLCELRPGRRQSLLCSLSDRTGKIFLRFFH-FSAWQQNLLTPGARVRCFGE 137 Query: 129 IKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PV 184 ++ + MVHP Y + + V + VY + GL + +I L L Sbjct: 138 PRQGAAGLEMVHPDYHRLSEDRPAVTEAYLTPVYPVTEGLRQSSLRDLIQGVLKDLGEEG 197 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIAL 240 + + + L P+++EA +H P E P ++RLA++ELLA ++L Sbjct: 198 IIDHVPSGFLAGIGLPTLSEALMYLHQPPPDAPLDLLAEGKHPVQQRLAFEELLAHHLSL 257 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 +R + ++ EG++ Q+ L +PF T +Q ++IL DM+Q++ M R+LQG Sbjct: 258 RQLRLRTSCLQAPLLSSEGRLQQRFLATLPFPLTAAQSQVAQEILADMAQESPMQRLLQG 317 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA +A+ AVEAG QAV+MAP +LA+QH ++ + + I VE + Sbjct: 318 DVGSGKTVVAALAILQAVEAGYQAVLMAPTELLAEQHLRVLQDWFCPSDIKVEWLAAKRT 377 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-- 418 RR++LER+ G+ + +GTHALFQ+ + ++ L LV+VDEQHRFGV+QRL L +K Sbjct: 378 AKARRESLERLEGGETAVAVGTHALFQEGVNFHNLGLVVVDEQHRFGVEQRLALREKGRY 437 Query: 419 --TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 + PH L+MTATPIPRTL +T+ D+D S I + P GR P+ T + R DEV+ R++ Sbjct: 438 GNSCPHQLIMTATPIPRTLAMTAYADLDTSVIDQLPPGRIPVATAVASDRRRDEVVARVR 497 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 G++AYW+C IEE ++ E L E I +IHGRM +KE M Sbjct: 498 WACRAGRQAYWVCTLIEESDSLQAQAAEESAAELAEALPELRIGLIHGRMKTQEKERTMA 557 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +FK+G LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S C+LL Sbjct: 558 AFKSGILHLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGAADSYCVLL 617 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 YH PLS+ S RL+ L+ T DGF IA DL+ R GE+LG +Q+G+P++ +A Sbjct: 618 YHGPLSELSRARLACLRATNDGFEIARRDLELRGPGEVLGTRQTGLPQYRVA 669 >gi|28896931|ref|NP_796536.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus RIMD 2210633] gi|153837892|ref|ZP_01990559.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus AQ3810] gi|260895519|ref|ZP_05904015.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus Peru-466] gi|28805139|dbj|BAC58420.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus RIMD 2210633] gi|149748755|gb|EDM59600.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus AQ3810] gi|308088485|gb|EFO38180.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus Peru-466] Length = 693 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 261/671 (38%), Positives = 397/671 (59%), Gaps = 28/671 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG K + L+K+ DLLF+ P + DR I+++ Sbjct: 10 PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + KR+ + ++DG G ITL FF T +KN F +G+ + G+IK+ Sbjct: 64 VQGKVMTVDTI-FGKRKMLTVKISDGNGTITLRFF-NFTAAMKNNFSQGKLVHAYGEIKR 121 Query: 132 LKNRIIMVHPHYIFHNSQ---DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188 + +VHP Y F+ S+ DV L VY GL + + +AL+ +L + Sbjct: 122 GGMGLEIVHPDYKFYASEQKPDVEQSLT-PVYPTTDGLRQITLRNLTEQALA---LLDKA 177 Query: 189 IEKDLLQKKSFP---SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALL 241 ++LL + ++++A + IH P + E PA+ RL +ELLA +++L Sbjct: 178 AVQELLPSGLYNHQITMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R + +++I +P+ K+ +++L +PFSPT +Q +K+I D+ + + M+R++QGD Sbjct: 238 AVRSKGQQDIALPLAPCDKLKKQLLAQLPFSPTNAQARVVKEIESDLEKPHPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+E G Q +MAP +LA+QH + + I V + G + Sbjct: 298 VGSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFEAMGIQVGWLAGKLKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 + L RIA G+A +I+GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +K Sbjct: 358 KAKETELARIASGEAQMIVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + D+++ER++ Sbjct: 418 GAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRN 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 L+EGK+AYW+C I+E + ++ + L I ++HGRM +K++VM Sbjct: 478 ACLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQ 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK+ LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 EFKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 YH PLSK + RL VL+ + DGF+IA++DL+ R GE+LG KQ+G+ F IA L Sbjct: 598 YHSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIADLVRDQRL 657 Query: 656 LEIARKDAKHI 666 + ++ A+HI Sbjct: 658 IPEVQRIARHI 668 >gi|254515854|ref|ZP_05127914.1| ATP-dependent DNA helicase RecG [gamma proteobacterium NOR5-3] gi|219675576|gb|EED31942.1| ATP-dependent DNA helicase RecG [gamma proteobacterium NOR5-3] Length = 686 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 252/669 (37%), Positives = 380/669 (56%), Gaps = 17/669 (2%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L + RGVG K + L + DLLF+ P + DR I + + V I Sbjct: 9 LESLRGVGPKLAQRLRSY------GISSVEDLLFHLPLRYQDRTQVTPIGALQDGTEVVI 62 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G I+ S +RR + L DGTG TL FF+ KN +G ++ G +++ Sbjct: 63 EGEIALVSVSGGGRRRSLLVKLQDGTGTATLRFFHFSMAQ-KNALQKGDRLRCFGAVRRG 121 Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKD 192 + M+HP Y D N + +Y G+S ++K+ +AL L P + Sbjct: 122 PAQAEMIHPEYRRSFGNDGNEDSLTPIYPSTEGVSQGQWRKLTDQALLILAKNPP--AEL 179 Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFK 248 L + + ++ A +H P D + + PA+ RLA +EL A Q+++ +R + + Sbjct: 180 LPARNNTYDLSSALRFLHRPPPGADLQALRDGSHPAQLRLALEELTAHQLSMRELRARSR 239 Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 + + + + ++ + +PF PT +Q I++I D++ MLR++QGDVGSGKT+ Sbjct: 240 ERAAPILEDKQGLKKRFIAALPFEPTGAQHRVIEEITADLATAKPMLRLVQGDVGSGKTI 299 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VA A A+ +G Q +MAP +LA+QH + + I + G++ R +AL Sbjct: 300 VAAAAALLAIASGYQVAVMAPTELLAEQHRRNFATWFADLNITQMWLAGSVKGQKRGQAL 359 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLL 425 IA+G+A ++IGTHALFQD +Q+ +L LVIVDEQHRFGV QRL L++K H L+ Sbjct: 360 AAIANGEASLVIGTHALFQDGVQFARLGLVIVDEQHRFGVHQRLALSEKTAGESRAHQLI 419 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL + + D+D S I E P GR+P+ TV+I R DE+IER+ EG++ Sbjct: 420 MTATPIPRTLSMVAYADLDCSIIDELPPGRQPVGTVLIDNQRRDEIIERVAHACREGRQV 479 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKL 544 YW+C IE+ ++ + L + ++A++HGRM +K++VM +FK G +L Sbjct: 480 YWVCTLIEDSDSLQAQAAESSYAELADALDGIAVALVHGRMKAKEKDAVMSAFKAGEYQL 539 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 L+ATTVIEVG+DV +A+++IIEN E GLAQLHQLRGRVGRG S C+LLY PL + S Sbjct: 540 LVATTVIEVGVDVPNATLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYQSPLGQQS 599 Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 RL V++ + DGF IAEEDL+QR GE+LG +Q+G+ +F +A+ H+ LL+ + A+ Sbjct: 600 RARLQVMRESNDGFYIAEEDLRQRGPGEVLGTRQTGLMEFRVARLPEHEHLLDEVQSMAE 659 Query: 665 HILTQDPDL 673 + P L Sbjct: 660 TLQASQPQL 668 >gi|328471707|gb|EGF42584.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus 10329] Length = 693 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 261/670 (38%), Positives = 395/670 (58%), Gaps = 26/670 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG K + L+K+ DLLF+ P + DR I+++ Sbjct: 10 PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + KR+ + ++DG G ITL FF T +KN F +G+ + G+IK+ Sbjct: 64 VQGKVMTVDTI-FGKRKMLTVKISDGNGTITLRFF-NFTAAMKNNFSQGKLVHAYGEIKR 121 Query: 132 LKNRIIMVHPHYIFHNSQ---DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186 + +VHP Y F+ S+ DV L VY GL + + +AL+ L + Sbjct: 122 GGMGLEIVHPDYKFYASEQKPDVEQSLT-PVYPTTDGLRQITLRNLTEQALALLDKAAVQ 180 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242 E + L + ++++A + IH P + E PA+ RL +ELLA +++L Sbjct: 181 ELLPSGLYNHQI--TMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSMLA 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R + +++I +P+ K+ +++L +PFSPT +Q +K+I D+ + + M+R++QGDV Sbjct: 239 VRSKGQQDIALPLAPCDKLKKQLLAQLPFSPTNAQARVVKEIESDLEKPHPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+E G Q +MAP +LA+QH + + I V + G + Sbjct: 299 GSGKTLVAALAAVRAIEHGYQVTLMAPTELLAEQHAINFANWFEAMGIQVGWLAGKLKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 + L RIA G+A +I+GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +K Sbjct: 359 AKETELARIASGEAQMIVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + D+++ER++ Sbjct: 419 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L+EGK+AYW+C I+E + ++ + L I ++HGRM +K++VM Sbjct: 479 CLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQE 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK+ LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C+LLY Sbjct: 539 FKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 H PLSK + RL VL+ + DGF+IA++DL+ R GE+LG KQ+G+ F IA L+ Sbjct: 599 HSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIADLVRDQRLI 658 Query: 657 EIARKDAKHI 666 ++ A+HI Sbjct: 659 PEVQRIARHI 668 >gi|308094586|ref|ZP_05890187.2| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus AN-5034] gi|308125968|ref|ZP_05778375.2| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus K5030] gi|308089992|gb|EFO39687.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus AN-5034] gi|308113429|gb|EFO50969.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus K5030] Length = 689 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 261/670 (38%), Positives = 395/670 (58%), Gaps = 26/670 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG K + L+K+ DLLF+ P + DR I+++ Sbjct: 6 PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 59 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + KR+ + ++DG G ITL FF T +KN F +G+ + G+IK+ Sbjct: 60 VQGKVMTVDTI-FGKRKMLTVKISDGNGTITLRFF-NFTAAMKNNFSQGKLVHAYGEIKR 117 Query: 132 LKNRIIMVHPHYIFHNSQ---DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186 + +VHP Y F+ S+ DV L VY GL + + +AL+ L + Sbjct: 118 GGMGLEIVHPDYKFYASEQKPDVEQSLT-PVYPTTDGLRQITLRNLTEQALALLDKAAVQ 176 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242 E + L + ++++A + IH P + E PA+ RL +ELLA +++L Sbjct: 177 ELLPSGLYNHQI--TMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSMLA 234 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R + +++I +P+ K+ +++L +PFSPT +Q +K+I D+ + + M+R++QGDV Sbjct: 235 VRSKGQQDIALPLAPCDKLKKQLLAQLPFSPTNAQARVVKEIESDLEKPHPMMRLVQGDV 294 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+E G Q +MAP +LA+QH + + I V + G + Sbjct: 295 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFEAMGIQVGWLAGKLKGK 354 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 + L RIA G+A +I+GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +K Sbjct: 355 AKETELARIASGEAQMIVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQG 414 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + D+++ER++ Sbjct: 415 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNA 474 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L+EGK+AYW+C I+E + ++ + L I ++HGRM +K++VM Sbjct: 475 CLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQE 534 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK+ LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C+LLY Sbjct: 535 FKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLY 594 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 H PLSK + RL VL+ + DGF+IA++DL+ R GE+LG KQ+G+ F IA L+ Sbjct: 595 HSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIADLVRDQRLI 654 Query: 657 EIARKDAKHI 666 ++ A+HI Sbjct: 655 PEVQRIARHI 664 >gi|223042049|ref|ZP_03612226.1| ATP-dependent DNA helicase [Actinobacillus minor 202] gi|223017166|gb|EEF15601.1| ATP-dependent DNA helicase [Actinobacillus minor 202] Length = 693 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 265/678 (39%), Positives = 389/678 (57%), Gaps = 26/678 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+ GVG + L +I G N DLLF+ P + DR I++I E T Sbjct: 10 PLTALSGVGAAIAEKLGRI---GIHN---VQDLLFHLPMRYEDRTRITPIADIRPESFAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I GY+ Q + Q +R + L+D T +I L FF M KN F G ++ G+IK+ Sbjct: 64 IEGYV-QLTEVQFGRRPILSVTLSDSTSKIMLKFFNFNAGM-KNSFATGVRVKAFGEIKR 121 Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + + HP Y I N+Q + + +YS GL +K+ +AL+ VL Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQASLRKLTEQALA---VLNNVQ 178 Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLL 242 +LL + P S+ EA ++H P + E PA++RL ++ELLA +A+ Sbjct: 179 VAELLPNEYNPHQYSLKEALQLLHRPPPSITPEILEKGEHPAQKRLIFEELLAHNLAMQQ 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R K++ P+ + + + L +PF PT++Q DI +D++Q + M+R++QGDV Sbjct: 239 LRLGVKQQFAEPLRYQTDLKSRFLAGLPFQPTQAQSRVTADIERDLAQNSPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A++ G Q +MAP ILA+QH + + I V + G + Sbjct: 299 GSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R LE I +G +IIGTHALFQ++++++ L LVI+DEQHRFGV QRL L +K Sbjct: 359 ARNAQLEAIKNGDVQMIIGTHALFQENVEFHDLALVIIDEQHRFGVHQRLTLREKGAKGD 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL-KV 477 PH L+MTATPIPRTL +T D+D S I E P GR PI TV+I R E+++R+ + Sbjct: 419 VYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVISEERRAEIVQRVYQA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 +E ++AYW+C I+E + ++ L I ++HGRM +K+++M Sbjct: 479 CKNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQAIMAE 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK LL+ATTVIEVG+DV +AS++IIEN+E GLAQLHQLRGRVGRG S C+L+Y Sbjct: 539 FKAANLDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGSTASHCVLMY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PPL K S RL V+++++DGF IAE+DL+ R GEILG KQ+GM +F +A ++ Sbjct: 599 KPPLGKISSKRLQVMRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVADLMRDRKMI 658 Query: 657 EIARKDAKHILTQDPDLT 674 + ++ AK I+ ++P L Sbjct: 659 PLVQRYAKQIIVENPPLA 676 >gi|313501284|gb|ADR62650.1| RecG [Pseudomonas putida BIRD-1] Length = 692 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 254/678 (37%), Positives = 391/678 (57%), Gaps = 23/678 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +GVG+ + L+K+ G N D+LF+ P + DR I ++ + Sbjct: 8 PVTVLKGVGEAMAEKLAKV---GLEN---LQDMLFHLPLRYQDRTRVVPIGQLRPGQDAV 61 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G +S + + KRR + L DG+G +TL FY + K G + G+ + Sbjct: 62 IEGVVS-GADVTMGKRRSLVVRLGDGSGVLTL-RFYHFSNAQKEGLKRGTHLRCYGEARP 119 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLP--VLP 186 + + + HP Y N + P+ + +Y GL+ + + ++L+ L LP Sbjct: 120 GASGLEIYHPEYRALNGNEPPPPVEQTLTPIYPSTEGLTQQRLRLLCQQSLALLGPRSLP 179 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242 +W+ +L + + EA +HNP D E A+ RLA++ELL Q++ Sbjct: 180 DWLPDELARDYQLAPLDEAIRYLHNPPADADLDELAEGQHWAQHRLAFEELLTHQLSQQR 239 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R+ + + ++ + L N+ F PT +Q+ +I D+SQ M+R++QGDV Sbjct: 240 LRESLRSLRAPVLPRATRLQAQYLANLGFQPTGAQQRVANEIAYDLSQHEPMMRLVQGDV 299 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 G+GKT+VA +A A+EAG Q +MAP ILA+QHY K++ + I V + G + Sbjct: 300 GAGKTVVAALAALQALEAGYQVALMAPTEILAEQHYITFKRWLEPLGIEVAWLAGKLKGK 359 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R +LE+IA+G A +++GTHALFQ+ +++ L L I+DEQHRFGVQQRL L +K A Sbjct: 360 ARAASLEQIANG-APMVVGTHALFQEEVRFKHLALAIIDEQHRFGVQQRLALRKKGVAGE 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH L+MTATPIPRTL +++ D+D S + E P GR P+ TV++ +R EV+ER++ Sbjct: 419 LCPHQLIMTATPIPRTLAMSAYADLDTSVLDELPPGRTPVNTVLVADSRRFEVVERVRAA 478 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 +EG++AYW+C IEE +E ++ + L + +IHGRM +K +M F Sbjct: 479 CAEGRQAYWVCTLIEESEELTCQAAESTYEELGSALGELKVGLIHGRMKPAEKAEIMAEF 538 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 K G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG +S C+LLYH Sbjct: 539 KAGNLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYH 598 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PPLS+ RL +++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A LL Sbjct: 599 PPLSQIGRERLGIMRETNDGFIIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLP 658 Query: 658 IARKDAKHILTQDPDLTS 675 R A+ ++++ P+ S Sbjct: 659 AVRDAAQALVSRWPEHVS 676 >gi|307547000|ref|YP_003899479.1| ATP-dependent DNA helicase RecG [Halomonas elongata DSM 2581] gi|307219024|emb|CBV44294.1| ATP-dependent DNA helicase RecG [Halomonas elongata DSM 2581] Length = 693 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 263/686 (38%), Positives = 391/686 (56%), Gaps = 28/686 (4%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 ++ L AP++ +GVG+ +L L+++ DLLF+ P + DR I+ + Sbjct: 1 MSELDAPVTNLKGVGEALALKLARL------RIESVADLLFHLPLRYQDRTRVTPIATLR 54 Query: 66 EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 + G ++ + +RR + L DG+G ++L FF+ + F G ++ Sbjct: 55 AGGEAVVEGEVAA-AEVVRGRRRSLLVRLRDGSGILSLRFFHFSPAQ-QQQFRAGIRVRA 112 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL 182 G+ + + + HP Y N D P+ + +Y GL + +I +AL+RL Sbjct: 113 FGEARAGATGLEIYHPEYRLLN--DATAPVEDHLTPIYPTTEGLHQTRLRALIGQALARL 170 Query: 183 PV----LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELL 234 LPEW+ L Q+ + P++ E +H P D E PA RLA +ELL Sbjct: 171 DAAPDELPEWLPDTLRQRFALPALHECLQTLHRPPPDADPQALAEGQHPATRRLALEELL 230 Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQ-KILRNIPFSPTKSQESAIKDILQDMSQKNR 293 A Q++L +R + +++ G P +G+ Q + L +PFS T +Q + +I D++ + Sbjct: 231 AHQLSLREVRLRIQRD-GAPSLPDGRGLQARFLTQLPFSLTGAQRRVLDEIRADLAGEMP 289 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 MLR++QGDVGSGKT+VA +A +A+ G QA IMAP ILA+QHY + + + I V Sbjct: 290 MLRLVQGDVGSGKTVVAAMAALSAIAGGCQAAIMAPTEILAEQHYRAFRAWFEPLGIDVA 349 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 + G + R I G+A +++GTHALFQ + + +L L IVDEQHRFGV QRL Sbjct: 350 WLAGKLKGKARLDTKAAIHDGRAQMVVGTHALFQGDVHFQRLGLAIVDEQHRFGVHQRLA 409 Query: 414 LTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469 L +K A PH L+MTATPIPRTL +++ D+D+S I E P GR P+KT ++P R Sbjct: 410 LREKGEAGGFTPHQLVMTATPIPRTLAMSAYADLDVSVIDELPPGRTPVKTAVVPDERRP 469 Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDI 528 EV+ER++ +EG++AYW+C IEE + ++ + L E +I ++HGRM Sbjct: 470 EVVERIRHACAEGRQAYWVCTLIEESEALQCQAAEATRDELVEALPGLNIGLVHGRMKAS 529 Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588 +K VM++FK G LL+ATTVIEVG+DV +AS++IIEN E GL+QLHQLRGRVGRG Sbjct: 530 EKAEVMEAFKEGELDLLVATTVIEVGVDVPNASLMIIENPERLGLSQLHQLRGRVGRGST 589 Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648 S C+LLYHPPLS S RL+V++ T DGF IAE DL+ R GE+LG +Q+G+ + IA Sbjct: 590 ESYCLLLYHPPLSDTSRQRLTVMRETTDGFRIAERDLEIRGPGEVLGTRQTGLAQMKIAD 649 Query: 649 PELHDSLLEIARKDAKHILTQDPDLT 674 E LL A+ +L P+ + Sbjct: 650 LERDADLLPHVSPLAEALLATHPEAS 675 >gi|148550419|ref|YP_001270521.1| ATP-dependent DNA helicase RecG [Pseudomonas putida F1] gi|148514477|gb|ABQ81337.1| ATP-dependent DNA helicase RecG [Pseudomonas putida F1] Length = 692 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 254/678 (37%), Positives = 391/678 (57%), Gaps = 23/678 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +GVG+ + L+K+ G N D+LF+ P + DR I ++ + Sbjct: 8 PVTVLKGVGEAMAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRVVPIGQLRPGQDAV 61 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G +S + + KRR + L DG+G +TL FY + K G + G+ + Sbjct: 62 IEGVVS-GADVTMGKRRSLVVRLGDGSGVLTL-RFYHFSNAQKESLKRGTHLRCYGEARP 119 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLP--VLP 186 + + + HP Y N + P+ + +Y GL+ + + ++L+ L LP Sbjct: 120 GASGLEIYHPEYRALNGNEPPPPVEQTLTPIYPSTEGLTQQRLRLLCQQSLALLGPRSLP 179 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242 +W+ +L + + EA +HNP D E A+ RLA++ELL Q++ Sbjct: 180 DWLPDELARDYQLAPLDEAIRYLHNPPADADLDELAEGQHWAQHRLAFEELLTHQLSQQR 239 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R+ + + ++ + L N+ F PT +Q+ +I D+SQ M+R++QGDV Sbjct: 240 LRESLRSLRAPVLPKATRLQAQYLANLGFQPTGAQQRVANEIAYDLSQHEPMMRLVQGDV 299 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 G+GKT+VA +A A+EAG Q +MAP ILA+QHY K++ + I V + G + Sbjct: 300 GAGKTVVAALAALQALEAGYQVALMAPTEILAEQHYITFKRWLEPLGIEVAWLAGKLKGK 359 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R +LE+IA+G A +++GTHALFQ+ +++ L L I+DEQHRFGVQQRL L +K A Sbjct: 360 ARAASLEQIANG-APMVVGTHALFQEEVRFKHLALAIIDEQHRFGVQQRLALRKKGVAGE 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH L+MTATPIPRTL +++ D+D S + E P GR P+ TV++ +R EV+ER++ Sbjct: 419 LCPHQLIMTATPIPRTLAMSAYADLDTSVLDELPPGRTPVNTVLVADSRRFEVVERVRAA 478 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 +EG++AYW+C IEE +E ++ + L + +IHGRM +K +M F Sbjct: 479 CAEGRQAYWVCTLIEESEELTCQAAESTYEELGSALGELRVGLIHGRMKPAEKAEIMAEF 538 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 K G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG +S C+LLYH Sbjct: 539 KAGNLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYH 598 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PPLS+ RL +++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A LL Sbjct: 599 PPLSQIGRERLGIMRETNDGFIIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLP 658 Query: 658 IARKDAKHILTQDPDLTS 675 R A+ ++++ P+ S Sbjct: 659 AVRDAAQALVSRWPEHVS 676 >gi|307257926|ref|ZP_07539680.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306863573|gb|EFM95502.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 693 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 269/678 (39%), Positives = 387/678 (57%), Gaps = 26/678 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+ GVG + LS+I N DLLF+ P + DR I ++ E T Sbjct: 10 PLTALSGVGAAIAEKLSRI-GINNVQ-----DLLFHLPYRYEDRTRITPIIDVRPESFST 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G I Q + Q +R +L+DGT +ITL FF M KN G ++ G+IK+ Sbjct: 64 IEG-IVQVTEVQFGRRPILSTVLSDGTSKITLKFFNFNAGM-KNSLTAGTRVKAFGEIKR 121 Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + + HP Y I N+Q + + +YS GL + +K+ +AL+ +L + Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQNSLRKLTEQALA---LLDKIK 178 Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALLL 242 +LL + P S+ EA ++H P A+ E PA++RL ++ELLA +A+ Sbjct: 179 VGELLPDEYNPHKYSLKEALQLLHRPPPDISAEQLEKGEHPAQKRLIFEELLAHNLAMQQ 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R + P+ + + + L ++PF PT +Q DI QD+++ + M+R++QGDV Sbjct: 239 VRVGVNQLTATPLCYQTDLKSRFLASLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A++ G Q +MAP ILA+QH + + I V + G + Sbjct: 299 GSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R LE I +G+ +IIGTHALFQ+S++++ L LVI+DEQHRFGV QRL L +K Sbjct: 359 ARTAQLEAIKNGEVQMIIGTHALFQESVEFHNLALVIIDEQHRFGVHQRLTLREKGAKDG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH L+MTATPIPRTL +T D+D S I E P GR PI TV I +R DE++ R+ Sbjct: 419 IYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAA 478 Query: 479 L-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 +E ++AYW+C I+E + ++ L I ++HGRM +K+ +M Sbjct: 479 CKNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQEIMAE 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK LL+ATTVIEVG+DV +AS++IIEN+E GLAQLHQLRGRVGRG S C+LLY Sbjct: 539 FKAANIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PPL K S RL VL++++DGF IAE+DL+ R GEILG KQ+GM +F +A ++ Sbjct: 599 KPPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVANLMRDRKMI 658 Query: 657 EIARKDAKHILTQDPDLT 674 + + AK I+ Q+P L Sbjct: 659 PLVQNYAKQIIQQNPPLA 676 >gi|307246757|ref|ZP_07528825.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255741|ref|ZP_07537544.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307260193|ref|ZP_07541902.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852332|gb|EFM84569.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861301|gb|EFM93292.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865738|gb|EFM97617.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 693 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 269/678 (39%), Positives = 387/678 (57%), Gaps = 26/678 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+ GVG + LS+I N DLLF+ P + DR I ++ E T Sbjct: 10 PLTALSGVGAAIAEKLSRI-GINNVQ-----DLLFHLPYRYEDRTRITPIIDVRPESFST 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G I Q + Q +R +L+DGT +ITL FF M KN G ++ G+IK+ Sbjct: 64 IEG-IVQVTEVQFGRRPILSTVLSDGTSKITLKFFNFNAGM-KNSLTAGTRVKAFGEIKR 121 Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + + HP Y I N+Q + + +YS GL + +K+ +AL+ +L + Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQNSLRKLTEQALA---LLDKIK 178 Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALLL 242 +LL + P S+ EA ++H P A+ E PA++RL ++ELLA +A+ Sbjct: 179 VGELLPDEYNPHKYSLKEALQLLHRPPPDISAEQLEKGEHPAQKRLIFEELLAHNLAMQQ 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R + P+ + + + L ++PF PT +Q DI QD+++ + M+R++QGDV Sbjct: 239 VRVGVNQLTATPLCYQTDLKSRFLASLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A++ G Q +MAP ILA+QH + + I V + G + Sbjct: 299 GSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R LE I +G+ +IIGTHALFQ+S++++ L LVI+DEQHRFGV QRL L +K Sbjct: 359 ARTAQLEAIKNGEVQMIIGTHALFQESVEFHNLALVIIDEQHRFGVHQRLTLREKGAKDG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH L+MTATPIPRTL +T D+D S I E P GR PI TV I +R DE++ R+ Sbjct: 419 IYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAA 478 Query: 479 L-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 +E ++AYW+C I+E + ++ L I ++HGRM +K+ +M Sbjct: 479 CKNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQEIMAE 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK LL+ATTVIEVG+DV +AS++IIEN+E GLAQLHQLRGRVGRG S C+LLY Sbjct: 539 FKAANIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PPL K S RL VL++++DGF IAE+DL+ R GEILG KQ+GM +F +A ++ Sbjct: 599 KPPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVANLMRDRKMI 658 Query: 657 EIARKDAKHILTQDPDLT 674 + + AK I+ Q+P L Sbjct: 659 PLVQNYAKQIIQQNPPLA 676 >gi|240948170|ref|ZP_04752573.1| ATP-dependent DNA helicase RecG [Actinobacillus minor NM305] gi|240297523|gb|EER48030.1| ATP-dependent DNA helicase RecG [Actinobacillus minor NM305] Length = 693 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 265/678 (39%), Positives = 389/678 (57%), Gaps = 26/678 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+ GVG + L +I G N DLLF+ P + DR I++I E T Sbjct: 10 PLTALSGVGAAIAEKLGRI---GIHN---VQDLLFHLPMRYEDRTRITPIADIRPESFAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I GY+ Q + Q +R + L+D T +I L FF M KN F G ++ G+IK+ Sbjct: 64 IEGYV-QLTEVQFGRRPILSVTLSDSTSKIMLKFFNFNAGM-KNSFATGVRVKAFGEIKR 121 Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + + HP Y I N+Q + + +YS GL +K+ +AL+ VL Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQASLRKLTEQALA---VLNNVQ 178 Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242 +LL + P S+ EA ++H P + E PA++RL ++ELLA +A+ Sbjct: 179 VAELLPNEYNPHQYSLKEALQLLHRPPPSITPEMLEKGEHPAQKRLIFEELLAHNLAMQQ 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R K++ P+ + + + L +PF PT++Q DI +D++Q + M+R++QGDV Sbjct: 239 LRLGVKQQFAEPLRYQTDLKSRFLAGLPFQPTQAQSRVTADIERDLAQNSPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A++ G Q +MAP ILA+QH + + I V + G + Sbjct: 299 GSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R LE I +G +IIGTHALFQ++++++ L LVI+DEQHRFGV QRL L +K Sbjct: 359 ARAAQLEAIKNGDVQMIIGTHALFQENVEFHHLALVIIDEQHRFGVHQRLTLREKGAKGD 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL-KV 477 PH L+MTATPIPRTL +T D+D S I E P GR PI TV+I R E+++R+ + Sbjct: 419 VYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVISEERRAEIVQRVYQA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 +E ++AYW+C I+E + ++ L I ++HGRM +K+++M Sbjct: 479 CKNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQAIMAE 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK LL+ATTVIEVG+DV +AS++IIEN+E GLAQLHQLRGRVGRG S C+L+Y Sbjct: 539 FKAANLDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGSTASHCVLMY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PPL K S RL V+++++DGF IAE+DL+ R GEILG KQ+GM +F +A ++ Sbjct: 599 KPPLGKISSKRLQVMRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVADLMRDRKMI 658 Query: 657 EIARKDAKHILTQDPDLT 674 + ++ AK I+ ++P L Sbjct: 659 PLVQRYAKQIIVENPPLA 676 >gi|26991986|ref|NP_747411.1| ATP-dependent DNA helicase RecG [Pseudomonas putida KT2440] gi|24987117|gb|AAN70875.1|AE016731_10 ATP-dependent DNA helicase RecG [Pseudomonas putida KT2440] Length = 692 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 254/678 (37%), Positives = 391/678 (57%), Gaps = 23/678 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +GVG+ + L+K+ G N D+LF+ P + DR I ++ + Sbjct: 8 PVTVLKGVGEAMAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRVVPIGQLRPGQDAV 61 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G +S + + KRR + L DG+G +TL FY + K G + G+ + Sbjct: 62 IEGVVS-GADVTMGKRRSLVVRLGDGSGVLTL-RFYHFSNAQKEGLKRGTHLRCYGEARP 119 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLP--VLP 186 + + + HP Y N + P+ + +Y GL+ + + ++L+ L LP Sbjct: 120 GASGLEIYHPEYRALNGNEPPPPVEQTLTPIYPSTEGLTQQRLRLLCQQSLALLGPRSLP 179 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242 +W+ +L + + EA +HNP D E A+ RLA++ELL Q++ Sbjct: 180 DWLPDELARDYQLAPLDEAIRYLHNPPADADLDELAEGQHWAQHRLAFEELLTHQLSQQR 239 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R+ + + ++ + L N+ F PT +Q+ +I D+SQ M+R++QGDV Sbjct: 240 LRESLRSLRAPVLPRATRLQAQYLANLGFQPTGAQQRVANEIAYDLSQHEPMMRLVQGDV 299 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 G+GKT+VA +A A+EAG Q +MAP ILA+QHY K++ + I V + G + Sbjct: 300 GAGKTVVAALAALQALEAGYQVALMAPTEILAEQHYITFKRWLEPLGIEVAWLAGKLKGK 359 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R +LE+IA+G A +++GTHALFQ+ +++ L L I+DEQHRFGVQQRL L +K A Sbjct: 360 ARAASLEQIANG-APMVVGTHALFQEEVRFKHLALAIIDEQHRFGVQQRLALRRKGVAGE 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH L+MTATPIPRTL +++ D+D S + E P GR P+ TV++ +R EV+ER++ Sbjct: 419 LCPHQLIMTATPIPRTLAMSAYADLDTSVLDELPPGRTPVNTVLVADSRRFEVVERVRAA 478 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 +EG++AYW+C IEE +E ++ + L + +IHGRM +K +M F Sbjct: 479 CAEGRQAYWVCTLIEESEELTCQAAESTYEELGSALGELKVGLIHGRMKPAEKAEIMAEF 538 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 K G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG +S C+LLYH Sbjct: 539 KAGNLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYH 598 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PPLS+ RL +++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A LL Sbjct: 599 PPLSQIGRERLGIMRETNDGFIIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLP 658 Query: 658 IARKDAKHILTQDPDLTS 675 R A+ ++++ P+ S Sbjct: 659 AVRDAAQALVSRWPEHVS 676 >gi|260902543|ref|ZP_05910938.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus AQ4037] gi|308109661|gb|EFO47201.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus AQ4037] Length = 693 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 261/670 (38%), Positives = 394/670 (58%), Gaps = 26/670 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG K + L+K+ DLLF+ P + DR I+++ Sbjct: 10 PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + KR+ + ++DG G ITL FF T +KN F +G+ + G+IK+ Sbjct: 64 VQGKVMTVDTI-FGKRKMLTVKISDGNGTITLRFF-NFTAAMKNNFSQGKLVHAYGEIKR 121 Query: 132 LKNRIIMVHPHYIFHNSQ---DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186 + +VHP Y F+ S+ DV L VY GL + + +AL L + Sbjct: 122 GGMGLEIVHPDYKFYASEQKPDVEQSLT-PVYPTTDGLRQITLRNLTEQALVLLDKAAVQ 180 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242 E + L + ++++A + IH P + E PA+ RL +ELLA +++L Sbjct: 181 ELLPSGLYNHQI--TMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSMLA 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R + +++I +P+ K+ +++L +PFSPT +Q +K+I D+ + + M+R++QGDV Sbjct: 239 VRSKGQQDIALPLAPCDKLKKQLLAQLPFSPTNAQARVVKEIESDLEKPHPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+E G Q +MAP +LA+QH + + I V + G + Sbjct: 299 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFEAMGIQVGWLAGKLKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 + L RIA G+A +I+GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +K Sbjct: 359 AKETELARIASGEAQMIVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + D+++ER++ Sbjct: 419 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L+EGK+AYW+C I+E + ++ + L I ++HGRM +K++VM Sbjct: 479 CLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQE 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK+ LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C+LLY Sbjct: 539 FKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 H PLSK + RL VL+ + DGF+IA++DL+ R GE+LG KQ+G+ F IA L+ Sbjct: 599 HAPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIADLVRDQRLI 658 Query: 657 EIARKDAKHI 666 ++ A+HI Sbjct: 659 PEVQRIARHI 668 >gi|303252704|ref|ZP_07338866.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248898|ref|ZP_07530909.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648443|gb|EFL78637.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306854593|gb|EFM86785.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 693 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 269/678 (39%), Positives = 387/678 (57%), Gaps = 26/678 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+ GVG + LS+I N DLLF+ P + DR I ++ E T Sbjct: 10 PLTALSGVGVAIAEKLSRI-GINNVQ-----DLLFHLPYRYEDRTRITPIIDVRPESFST 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G I Q + Q +R +L+DGT +ITL FF M KN G ++ G+IK+ Sbjct: 64 IEG-IVQVTEVQFGRRPILSTVLSDGTSKITLKFFNFNAGM-KNSLTAGTRVKAFGEIKR 121 Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + + HP Y I N+Q + + +YS GL + +K+ +AL+ +L + Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQNSLRKLTEQALA---LLDKIK 178 Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALLL 242 +LL + P S+ EA ++H P A+ E PA++RL ++ELLA +A+ Sbjct: 179 VGELLPDEYNPHKYSLKEALQLLHRPPPDISAEQLEKGEHPAQKRLIFEELLAHNLAMQQ 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R + P+ + + + L ++PF PT +Q DI QD+++ + M+R++QGDV Sbjct: 239 VRVGVNQLTATPLCYQTDLKSRFLASLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A++ G Q +MAP ILA+QH + + I V + G + Sbjct: 299 GSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R LE I +G+ +IIGTHALFQ+S++++ L LVI+DEQHRFGV QRL L +K Sbjct: 359 ARTAQLEAIKNGEVQMIIGTHALFQESVEFHNLALVIIDEQHRFGVHQRLTLREKGAKDG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH L+MTATPIPRTL +T D+D S I E P GR PI TV I +R DE++ R+ Sbjct: 419 IYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAA 478 Query: 479 L-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 +E ++AYW+C I+E + ++ L I ++HGRM +K+ +M Sbjct: 479 CKNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQEIMAE 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK LL+ATTVIEVG+DV +AS++IIEN+E GLAQLHQLRGRVGRG S C+LLY Sbjct: 539 FKAANIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PPL K S RL VL++++DGF IAE+DL+ R GEILG KQ+GM +F +A ++ Sbjct: 599 KPPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVANLMRDRKMI 658 Query: 657 EIARKDAKHILTQDPDLT 674 + + AK I+ Q+P L Sbjct: 659 PLVQNYAKQIIQQNPPLA 676 >gi|292572214|gb|ADE30129.1| ATP-dependent DNA helicase RecG [Rickettsia prowazekii Rp22] Length = 724 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 270/694 (38%), Positives = 392/694 (56%), Gaps = 36/694 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 LFAP+ F + + +S + G N DLLFY P S+ ++ P ++++ Sbjct: 31 LFAPVKAFINIREDT---VSALKRLGIKN---IRDLLFYLPVSYQNKILSPNLTKVRGGE 84 Query: 69 IVTITGYISQHSSFQLQKR--RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 I+ ++ S LQKR +P KI ++ TG + L+FF++ + + N G K ++ Sbjct: 85 IIQTEIIVN---SINLQKRGNQPLKITASNNTGSLLLVFFHKPPQFILNKLKVGTKHIIS 141 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186 GK++ ++ ++HP +I + IE +YS+ LS I++A+ Sbjct: 142 GKVQFFDYQLQILHPEFITNPQLS---KAIEPLYSMTYSLSNTQLYSYIIKAIEIFEEKC 198 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIH---NPRKAKDFEWTS-----------PARERLAYDE 232 IE L K+ I + I+H +P T+ A+++LA E Sbjct: 199 NGIEDKEL-KEYLDVILQNLKILHVFLSPHNLISCSRTTDIVVNPSYAIVAAKKQLAIKE 257 Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292 L+A QI+LL +R Q ++ G I + ILR + F T Q+ I++I + S K Sbjct: 258 LIANQISLLNVRMQINRKHGNIYPKAASIQENILRELGFELTYYQKQVIEEIEFEQSDKV 317 Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352 M+R+LQGDVGSGKTLVAL+ M V G QA +MAP +LA QHY+F K +NT I V Sbjct: 318 EMMRLLQGDVGSGKTLVALLTMVNVVTTGFQATLMAPTDLLANQHYDFFVKALKNTNIRV 377 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 ++TG + RR + ++ +G+ I+IGTHALFQ+ + + KL +++DEQHRFGVQQRL Sbjct: 378 GLLTGKILGKARRNIIIQLVNGKIDILIGTHALFQEKVSFKKLGYIVIDEQHRFGVQQRL 437 Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 L K P VL+MTATPIPR+L LT GD+ +SK+ KP R I T + +N+I +I Sbjct: 438 NLINKGVNPDVLIMTATPIPRSLALTMFGDMTVSKLIGKPKNRLSIVTKTMSVNKIGYII 497 Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFR------SVVERFNSLHEHFTSSIAIIHGRMS 526 + + L G++ YWICP I ++++ + V+ RFNS+ + IIHG+M Sbjct: 498 KAINKRLIAGERVYWICPLITQREKETLQEDLLLMDVINRFNSIKNIYQGYTGIIHGKMK 557 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 + KE +M FK G K+L+AT VIEVGIDV +A++I+IENAE FGLAQLHQLRGRVGRG Sbjct: 558 NDQKERIMKQFKEGEIKILVATNVIEVGIDVSEATLIVIENAEQFGLAQLHQLRGRVGRG 617 Query: 587 EEISSCILLYHPP-LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645 S CILLY+P L K + R ++K+T DGF IAE+DLK R GEILGIKQSG F Sbjct: 618 RLQSYCILLYNPKRLGKVAQNRFKIMKHTNDGFYIAEQDLKLRGSGEILGIKQSGEIDFF 677 Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679 A +LL A K A+ ++ ++ V Q Sbjct: 678 FADLAEDYALLIKAHKIAEREISLKDNVNFVNFQ 711 >gi|330814102|ref|YP_004358341.1| ATP-dependent DNA helicase RecG [Candidatus Pelagibacter sp. IMCC9063] gi|327487197|gb|AEA81602.1| ATP-dependent DNA helicase RecG [Candidatus Pelagibacter sp. IMCC9063] Length = 687 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 250/693 (36%), Positives = 403/693 (58%), Gaps = 12/693 (1%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 LF+ ++ +GVG S K+ + G N+ IDL P+ IDR + PK+ ++ Sbjct: 6 LFSSVNKIKGVGPVIS---KKLSDKGIENK---IDLFLNLPTGAIDRRFCPKLDQLEVGV 59 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 I TI ++S + + P ++ D G I ++FF + ++ + ++ ++GK Sbjct: 60 ISTIFVRPIKYSIPRF-RNLPNRVTCKDEYGSIDIIFFNSRESYIRQILPLNEEVVISGK 118 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188 + KN+ M +P YI ++ + I A YS G+S +KI E + +L + EW Sbjct: 119 VGFYKNKYQMTNPDYIQSIDKEKDITKIMAKYSSVAGISPKTIQKIYKEEIGKLKDIGEW 178 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248 +D L+K ++P+ +A +HNP D S +RLA+DE+ + + ++K+ K Sbjct: 179 HSQDFLKKMAWPTWYDAIYNLHNPINVSDVNKESKFYKRLAFDEIFSNFLIFSEIKKRIK 238 Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 K I + ++ KI +PF+ TKSQ+ A+K+IL D+S + +MLR+LQGDVGSGKT Sbjct: 239 KLIKVSKVIDEDNLLKIKEMLPFTLTKSQQEALKEILTDISSERKMLRVLQGDVGSGKTA 298 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VA+IA V++G Q + P +LA+QH+ KK +N + V+++T + + + Sbjct: 299 VAMIAAYLTVKSGYQVAFLCPTELLAKQHFLLFKKVLENENLNVQLLTSKIKGSEQVDTR 358 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLLMT 427 +++ + I++GTH+LFQ+ + L L+++DEQH+FGVQQR+ L+ K + VLLMT Sbjct: 359 FQLSQNKVDIVVGTHSLFQEKTTFNNLGLIVIDEQHKFGVQQRINLSLKGSVNTDVLLMT 418 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL+LT+ GD+DIS I EKP I T+ P ++D+V+ LK L E + YW Sbjct: 419 ATPIPRTLILTNYGDMDISTINEKPFNNTTINTLAKPAEQMDDVMFFLKKRLDEKDQVYW 478 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 + P IEE ++ V+R+ L + + ++HG M +K +M+ F +G K++++ Sbjct: 479 VTPLIEESEKLKLTPAVKRYEYLKKKLKVEVGLVHGAMKSEEKNKIMEDFISGKIKVIVS 538 Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607 TTVIEVGID +A+ +IIEN E FGL+QLHQLRGRVGRG+ + C+LLY + N R Sbjct: 539 TTVIEVGIDNQNANTMIIENCERFGLSQLHQLRGRVGRGKVDAHCLLLYSKNIGINGKKR 598 Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 + +LK++ DGF I+EEDLK R G+I+G KQSG F+IA P H L ++A+++ +++ Sbjct: 599 IQILKSSLDGFYISEEDLKLRGFGDIIGYKQSGEKDFIIADPAYHSDLFQLAKEEIENLE 658 Query: 668 TQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 ++ L Q LL +++ + I G Sbjct: 659 NKNVKLE----QHFSQLLKIFKKDRVLNIIDTG 687 >gi|109896683|ref|YP_659938.1| ATP-dependent DNA helicase RecG [Pseudoalteromonas atlantica T6c] gi|109698964|gb|ABG38884.1| ATP-dependent DNA helicase RecG [Pseudoalteromonas atlantica T6c] Length = 691 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 255/651 (39%), Positives = 385/651 (59%), Gaps = 26/651 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +GVG K + K++ G + DLLF+ P + DR I+E+ + Sbjct: 8 PVTQLKGVGSKVA---EKLVKLGLQS---VQDLLFHLPHRYEDRTRIYPIAELMPHLHTS 61 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + S Q ++R + ++DGTG ITL FF+ KN G +I G+++ Sbjct: 62 VEGEVMS-SDVQFGRKRMLIVRISDGTGTITLRFFHFSAAQ-KNSLENGTRIRCFGEVRA 119 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLPV--LP 186 K + ++HP Y S D N L E+ VY G+ + + +AL+ L L Sbjct: 120 GKYGLEIMHPEYKT-ISADSNAQLAESLTPVYPSTEGVKQITLRNLTEQALTLLDKGGLA 178 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242 E + +D+ Q++ + EA +++H P E PA++RLA +ELLA +++L Sbjct: 179 ELLPEDVYQQQV--GLIEALHLVHRPPPDVTLALLEEGKHPAQQRLALEELLAHHLSVLK 236 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R+Q + + G I + +++L ++PF T +Q+ I DI DM + M+R++QGDV Sbjct: 237 VRQQSQLQKGFAITPSEPLLKQLLDSLPFDLTGAQQRVINDIQHDMQRPTPMMRLVQGDV 296 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A +A+ AG Q V+MAP +LA+QH + + I V + G + Sbjct: 297 GSGKTLVAAMAALSAISAGYQVVMMAPTELLAEQHMNNFQGWFAPLGIEVGWLAGKLKGK 356 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL----TQKA 418 R + LE +A G+ +++GTHA+FQ+++QY L LVIVDEQHRFGV QRL L Q+ Sbjct: 357 ARNETLENLASGKLQLLVGTHAVFQETVQYQSLALVIVDEQHRFGVHQRLALREKGVQQG 416 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV- 477 PH L+MTATPIPRTL +T+ D+D S I E P GR+PI TV++P R EV+ER+++ Sbjct: 417 AFPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRRPITTVVLPETRRIEVVERVRLA 476 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 + +G++ YW+C IEE + ++ E +L + ++HGR+ +K+ +M Sbjct: 477 TVEQGRQTYWVCTLIEESEVLQSQAAEETAIALATALPELKVGLVHGRLKADEKQRLMQQ 536 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK+G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+L+Y Sbjct: 537 FKDGEMDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVESHCVLMY 596 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 PLSK + RL+VL+ + DGF IA++DL+ R GE+LG KQ+G+ IA Sbjct: 597 QSPLSKTAAKRLAVLRESHDGFYIAQQDLEIRGPGELLGTKQTGLADLRIA 647 >gi|92115360|ref|YP_575288.1| ATP-dependent DNA helicase RecG [Chromohalobacter salexigens DSM 3043] gi|91798450|gb|ABE60589.1| ATP-dependent DNA helicase RecG [Chromohalobacter salexigens DSM 3043] Length = 697 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 257/683 (37%), Positives = 382/683 (55%), Gaps = 26/683 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L AP+ GVG+ + L+++ D+LF+ P + DR I + Sbjct: 8 LDAPVGELSGVGEALTAKLARL------GIVSIADMLFHLPLRYQDRTRITPIGTLRAGT 61 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 + G I+ + +RR + L DG+G ++L FF+ + F G ++ G+ Sbjct: 62 EAVVEGEIAAADIVK-GRRRSLLVRLKDGSGILSLRFFHFSPAQ-QQQFVRGMRVRAFGE 119 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIE---AVYSLPTGLSVDLFKKIIVEALSRL--- 182 + + + HP Y +D P+ E +Y GL+ + ++ +AL RL Sbjct: 120 ARAGATGLEIYHPEYRLLRQEDA--PVEEHLTPIYPTTEGLAQPRLRGLVQQALKRLDDD 177 Query: 183 -PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK----AKDFEWTSPARERLAYDELLAGQ 237 LP+WI L Q+ P + E+ +H P A+ E PA+ RLA +ELLA Q Sbjct: 178 DAGLPDWIPDSLRQRFRLPGLVESLRYLHEPPPDAPVAQLAEGKHPAQRRLALEELLAHQ 237 Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 ++L +R + + + + + + L +PFS T +Q + +I D+ + MLR+ Sbjct: 238 LSLRQVRLRIQTDSAPSLGGGRGLQARFLTQLPFSLTGAQRRVLDEIGHDLERAVPMLRL 297 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 +QGDVGSGKT+VA +A AA+ G QA IMAP ILA+QHY + I V ++G Sbjct: 298 VQGDVGSGKTVVAAMAALAAIAGGCQAAIMAPTEILAEQHYRNFSDWFAPLGIEVGWLSG 357 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 + R IA G+ + +GTHALFQD +++++L L I+DEQHRFGV QRL L QK Sbjct: 358 KLKGKARLDTKAAIADGRVQVAVGTHALFQDDVRFHRLGLAIIDEQHRFGVHQRLALRQK 417 Query: 418 ATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 A PH L+MTATPIPRTL +++ D+D+S I E P GR P++TV +P R EV+E Sbjct: 418 GEAGGLTPHQLIMTATPIPRTLAMSAYADLDLSMIDELPPGRTPVQTVAVPDERRPEVVE 477 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532 R++ +EG +AYW+C IEE + ++ L E ++ ++HGRM +K Sbjct: 478 RIQRACAEGHQAYWVCTLIEESEALTCQAAEATHAHLGEALPDLAVGLVHGRMKAGEKAE 537 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 VM +F +G LL+ATTVIEVG+DV +AS++IIEN E GL+QLHQLRGRVGRG S C Sbjct: 538 VMAAFTSGELDLLVATTVIEVGVDVPNASLMIIENPERLGLSQLHQLRGRVGRGATESFC 597 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +LLYHPPLS +S RL V+++T DGF IAE+DL+ R GE+LG +Q+G+ + IA E Sbjct: 598 VLLYHPPLSHHSRERLGVMRDTTDGFRIAEKDLELRGPGEVLGTRQTGLAQMKIADLERD 657 Query: 653 DSLLEIARKDAKHILTQDPDLTS 675 LL+ A+ +L + P+ + Sbjct: 658 RDLLDTISPLARALLDEAPEAAT 680 >gi|157803559|ref|YP_001492108.1| ATP-dependent DNA helicase RecG [Rickettsia canadensis str. McKiel] gi|157784822|gb|ABV73323.1| ATP-dependent DNA helicase RecG [Rickettsia canadensis str. McKiel] Length = 705 Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust. Identities = 269/652 (41%), Positives = 375/652 (57%), Gaps = 41/652 (6%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLLFY P S+ ++ P ++++ + I+ T + + S +P KI + TG + Sbjct: 37 DLLFYIPVSYQNKTLSPNLTKVRDGEIIQ-TEIVIESISLPKNSNQPLKITARNDTGSLL 95 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAV 159 L+FF+R + N G ++GK++ + + + HP +I VN L IE + Sbjct: 96 LVFFHRPPPFIFNKLKVGTSHIISGKVQFFDHHLQISHPEFI------VNPTLAKEIEPI 149 Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP---RKAK 216 YSL LS I++A+ + +E D K SI + ++H+ RK++ Sbjct: 150 YSLTYLLSNKQLYSYIIKAMDIFERKCKGLE-DKEVKDYLDSILQNLKVLHSLCHLRKSR 208 Query: 217 DFE--------WT------SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA 262 + E W + A++ LA EL+A QI+L +R Q + G N+ K A Sbjct: 209 NSEKMDIMVKSWDDTRVCLNNAKKHLAAKELIANQISLFNVRTQISRRQG---NIFPKAA 265 Query: 263 Q---KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319 IL + F T Q+ I++I D S K M+R+LQGDVGSGKTLVAL+ M Sbjct: 266 GPQVNILNELGFELTPYQKQVIEEIELDQSDKVEMMRLLQGDVGSGKTLVALLTMVNVAV 325 Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379 AG QA +MAP +LA QHYEF K +NT I V ++TG + R+ + ++ +G+ I+ Sbjct: 326 AGFQATLMAPTDLLANQHYEFFVKALKNTNIRVGLLTGKILGLARKNIMIQLENGEIEIL 385 Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439 +GTHALFQ+ + + KL +++DEQHRFGVQQRL L K P VL+MTATPIPR+L LT Sbjct: 386 LGTHALFQEKVSFKKLGYIVIDEQHRFGVQQRLNLINKGVNPDVLVMTATPIPRSLALTM 445 Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--- 496 GD+ ISK+ KP R PI T I+ N+I+ VIE + L G++ YWICP IE K Sbjct: 446 FGDMTISKLQGKPKNRLPIATNIMSTNKIEHVIEAINKKLILGERIYWICPLIERGKQEE 505 Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 +S V+ RFNS+ + IIHG+M + K+ +M FK G K+L+ATTVIEV Sbjct: 506 QEDDSVLMDVMNRFNSIENIYQGYTGIIHGKMKNEQKDIIMKQFKEGEIKILVATTVIEV 565 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LSKNSYTRLSVLK 612 GIDV +A++IIIENAE FGLAQLHQLRGRVGRG S CILLY+P L + + R +++ Sbjct: 566 GIDVPEATLIIIENAEQFGLAQLHQLRGRVGRGNLQSYCILLYNPKRLGQVARGRFEIMQ 625 Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 T DGF IAE+DLK R GEILG+KQSG +F A H LL A K A+ Sbjct: 626 QTNDGFYIAEQDLKLRGSGEILGVKQSGEIEFFFADLAEHYDLLLKANKFAE 677 >gi|307251432|ref|ZP_07533346.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306856516|gb|EFM88658.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 693 Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust. Identities = 267/678 (39%), Positives = 385/678 (56%), Gaps = 26/678 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+ GVG + LS+I N DLLF+ P + DR I ++ E T Sbjct: 10 PLTALSGVGAAIAEKLSRI-GINNVQ-----DLLFHLPYRYEDRTRITPIIDVRPESFST 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G I Q + Q +R +L+DGT +ITL FF M KN G ++ G+IK+ Sbjct: 64 IEG-IVQVTEVQFGRRPILSTVLSDGTSKITLKFFNFNAGM-KNSLTAGTRVKAFGEIKR 121 Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + + HP Y I N+Q + + +YS GL + +K+ +AL+ +L + Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQNSLRKLTEQALA---LLDKIK 178 Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242 +LL + P S+ A ++H P + E PA++RL ++ELLA +A+ Sbjct: 179 VGELLPDEYNPHKYSLKGALQLLHRPPPSVSAEQLEKGEHPAQKRLIFEELLAHNLAMQQ 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R + P+ + + + L ++PF PT +Q DI QD+++ + M+R++QGDV Sbjct: 239 VRVGVNQLTATPLRYQTDLKSRFLASLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A++ G Q +MAP ILA+QH + + I V + G + Sbjct: 299 GSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R LE I +G+ +IIGTHALFQ+S++++ L LVI+DEQHRFGV QRL L +K Sbjct: 359 ARTAQLEAIKNGEVQMIIGTHALFQESVEFHNLALVIIDEQHRFGVHQRLTLREKGAKDG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH L+MTATPIPRTL +T D+D S I E P GR PI TV I +R DE++ R+ Sbjct: 419 IYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAA 478 Query: 479 L-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 +E ++AYW+C I+E + ++ L I ++HGRM +K+ +M Sbjct: 479 CKNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQEIMAE 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK LL+ATTVIEVG+DV +AS++IIEN+E GLAQLHQLRGRVGRG S C+LLY Sbjct: 539 FKAANIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PPL K S RL VL++++DGF IAE+DL+ R GEILG KQ+GM +F +A ++ Sbjct: 599 KPPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVANLMRDRKMI 658 Query: 657 EIARKDAKHILTQDPDLT 674 + + AK I+ Q+P L Sbjct: 659 PLVQNYAKQIIQQNPPLA 676 >gi|46143481|ref|ZP_00135158.2| COG1200: RecG-like helicase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126209289|ref|YP_001054514.1| ATP-dependent DNA helicase RecG [Actinobacillus pleuropneumoniae L20] gi|126098081|gb|ABN74909.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 693 Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust. Identities = 267/678 (39%), Positives = 385/678 (56%), Gaps = 26/678 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+ GVG + LS+I N DLLF+ P + DR I ++ E T Sbjct: 10 PLTALSGVGAAIAEKLSRI-GINNVQ-----DLLFHLPYRYEDRTRITPIIDVRPESFST 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G I Q + Q +R +L+DGT +ITL FF M KN G ++ G+IK+ Sbjct: 64 IEG-IVQVTEVQFGRRPILSTVLSDGTSKITLKFFNFNAGM-KNSLTAGTRVKAFGEIKR 121 Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + + HP Y I N+Q + + +YS GL + +K+ +AL+ +L + Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSATEGLKQNSLRKLTEQALA---LLDKIK 178 Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242 +LL + P S+ A ++H P + E PA++RL ++ELLA +A+ Sbjct: 179 VGELLPDEYNPHKYSLKGALQLLHRPPPSVSAEQLEKGEHPAQKRLIFEELLAHNLAMQQ 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R + P+ + + + L ++PF PT +Q DI QD+++ + M+R++QGDV Sbjct: 239 VRVGVNQLTATPLRYQTDLKSRFLASLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A++ G Q +MAP ILA+QH + + I V + G + Sbjct: 299 GSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R LE I +G+ +IIGTHALFQ+S++++ L LVI+DEQHRFGV QRL L +K Sbjct: 359 ARTAQLEAIKNGEVQMIIGTHALFQESVEFHNLALVIIDEQHRFGVHQRLTLREKGAKDG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH L+MTATPIPRTL +T D+D S I E P GR PI TV I +R DE++ R+ Sbjct: 419 IYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAA 478 Query: 479 L-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 +E ++AYW+C I+E + ++ L I ++HGRM +K+ +M Sbjct: 479 CKNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQEIMAE 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK LL+ATTVIEVG+DV +AS++IIEN+E GLAQLHQLRGRVGRG S C+LLY Sbjct: 539 FKAANIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PPL K S RL VL++++DGF IAE+DL+ R GEILG KQ+GM +F +A ++ Sbjct: 599 KPPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVANLMRDRKMI 658 Query: 657 EIARKDAKHILTQDPDLT 674 + + AK I+ Q+P L Sbjct: 659 PLVQNYAKQIIQQNPPLA 676 >gi|37678423|ref|NP_933032.1| RecG-like helicase [Vibrio vulnificus YJ016] gi|37197163|dbj|BAC93003.1| RecG-like helicase [Vibrio vulnificus YJ016] Length = 693 Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust. Identities = 262/651 (40%), Positives = 387/651 (59%), Gaps = 26/651 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG K + L KI + DLLF+ P + DR I+++ Sbjct: 10 PLTSLSGVGAKVAEKLEKI------GLSSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G++ Q + KR+ + L+DG G ITL FF T +KN F EG+ + G+IK+ Sbjct: 64 VQGHVMQVDTL-FGKRKMLTVKLSDGNGTITLRFF-NFTAAMKNNFAEGKLVHAYGEIKR 121 Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186 + +VHP Y F DV L VY GL + + +AL+ L + Sbjct: 122 GNMGLEIVHPDYKFFAPTQKPDVEQSLT-PVYPTTDGLRQITLRNLTDQALALLDKAAVQ 180 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW----TSPARERLAYDELLAGQIALLL 242 E + L ++ ++ +A +IIH P D E PA+ RL +ELLA +++L Sbjct: 181 ELLPAGLYDQQL--TMGQALHIIHRPSPEIDLELFDEGKHPAQVRLIMEELLAQNLSMLA 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R + ++++ +P+ ++ Q++L +PFSPT +Q +++I +DM + + M+R++QGDV Sbjct: 239 VRSKGQQDVALPLPPVHQLKQQLLAQLPFSPTNAQARVVQEIEEDMQKAHPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+E G Q +MAP +LA+QH + + I V + G + Sbjct: 299 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFEKMGIPVGWLAGKLKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 + L RIA G+A +++GTHALFQ+ + + L LVI+DEQHRFGV QRL+L +K Sbjct: 359 AKEAELARIASGEAKMVVGTHALFQEHVVFDHLALVIIDEQHRFGVHQRLELREKGAKQG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + ++++ER++ Sbjct: 419 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKREDIVERIRHA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L+EGK+AYW+C I+E + ++ + L I ++HGRM +K++VM + Sbjct: 479 CLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVRIGLVHGRMKPAEKQAVMQA 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FKN LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLY Sbjct: 539 FKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 H PLSK + RLSVL+ + DGF+IA+ DL+ R GE+LG KQ+G+ F IA Sbjct: 599 HAPLSKTAQKRLSVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIA 649 >gi|188532204|ref|YP_001906001.1| ATP-dependent DNA helicase RecG [Erwinia tasmaniensis Et1/99] gi|188027246|emb|CAO95085.1| ATP-dependent DNA helicase [Erwinia tasmaniensis Et1/99] Length = 693 Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust. Identities = 255/675 (37%), Positives = 382/675 (56%), Gaps = 24/675 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+T GVG + L+++ DLL + P + DR I+++ T Sbjct: 10 PLNTLTGVGASQAAKLARL------GLVTVQDLLLHLPMRYEDRTQLYAINDLLPGIYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + HS +RR + DGTG +TL FF M KN GRK+T G+IK+ Sbjct: 64 VEGEVL-HSDISFGRRRMLTCQIGDGTGTLTLRFFNFNAGM-KNSLAVGRKVTAYGEIKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187 + ++HP Y V + VYS G+ + + +ALS L + E Sbjct: 122 GQRGAEIIHPEYKVQGEHSVTELQETLTPVYSTTEGVRQATLRNLTEQALSLLDTSAIAE 181 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNP---RKAKDFE-WTSPARERLAYDELLAGQIALLLM 243 + +L + S+++A +H P D + T PA+ RL +ELLA +++L + Sbjct: 182 LLPPEL--SRGLISLSDALRTLHRPPPDMALADLDSGTHPAQRRLIMEELLAHNLSMLAV 239 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 R ++ +P++ +++ ++L +PF PT +Q+ +++I +D++ M+R++QGDVG Sbjct: 240 RAGAQRYHALPMSPRHQLSDRLLAALPFRPTSAQQRVVREIEEDLAHDYPMMRLVQGDVG 299 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKTLVA + + G Q +MAP +LA+QH +++ + V + G Sbjct: 300 SGKTLVAALTALNVIAWGKQVALMAPTELLAEQHANNFRQWFAPLGLEVGWLAGKQKGKA 359 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420 R+ E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 360 RQAQQEAIASGQVSMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGEEQGF 419 Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I R+K Sbjct: 420 HPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRRADIITRVKDAC 479 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 SEG++AYW+C IEE + ++ + L +I ++HGRM +K++VM +F Sbjct: 480 GSEGRQAYWVCTLIEESELLEAQAAQATWEELKLALPELTIGLVHGRMKPAEKQAVMQAF 539 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 K G LLIATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLY Sbjct: 540 KQGEIHLLIATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 599 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PLSK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G +F +A +L+ Sbjct: 600 SPLSKTAQKRLQVLRDSNDGFVIAQCDLEIRGPGELLGTRQTGNAEFRVADLLRDQALIP 659 Query: 658 IARKDAKHILTQDPD 672 ++ A+HI P+ Sbjct: 660 EVQRVARHIHQHYPE 674 >gi|146309411|ref|YP_001189876.1| ATP-dependent DNA helicase RecG [Pseudomonas mendocina ymp] gi|145577612|gb|ABP87144.1| ATP-dependent DNA helicase RecG [Pseudomonas mendocina ymp] Length = 691 Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust. Identities = 257/673 (38%), Positives = 389/673 (57%), Gaps = 24/673 (3%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 ++ +GVG + L+K+ G N D+LF+ P + DR I + + + Sbjct: 9 VTALKGVGAALAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRITPIGALRPGQDAVV 62 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G ++ + + +RR + L DG+G ++L FF+ ++ K G + G+++ Sbjct: 63 EGIVA-GADVVMGRRRSLLVRLQDGSGTLSLRFFH-FSQAQKEGLKRGTALRCYGEVRPG 120 Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187 + + HP Y S D P+ + +Y GL+ +++ +AL+RL LP+ Sbjct: 121 ATGLEIYHPEY-RAQSGDEPAPVEQSLTPIYPTTEGLTQQRLRQLSQQALARLGPRSLPD 179 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE----RLAYDELLAGQIALLLM 243 W+ +L + + EA +H P D E + R RLA++ELL Q++L + Sbjct: 180 WLPDELARDYRLAPLDEAIRYLHRPPPDADLEELAEGRHWAQHRLAFEELLTHQLSLQRL 239 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 R+Q + + + K+ Q+ L N+ F+PT +Q+ +I D++Q MLR++QGDVG Sbjct: 240 REQVRAQQAPALPPAQKLPQQYLANLGFAPTGAQQRVGAEIAYDLAQSEPMLRLVQGDVG 299 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 +GKT+VA +A A+EAG Q +MAP ILA+QH+ K+ + V + G + Sbjct: 300 AGKTVVAALAALQALEAGYQVALMAPTEILAEQHFLNFSKWLAPLGLDVAWLAGKLKGKA 359 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419 R ALE+IA G +++GTHALFQD +++ +L LVI+DEQHRFGVQQRL L QK Sbjct: 360 RASALEQIAAG-CPMVVGTHALFQDEVKFRRLALVIIDEQHRFGVQQRLALRQKGIDGRL 418 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 PH L+MTATPIPRTL +++ D+D S + E P GR P+ T++I +R EVIER++ Sbjct: 419 CPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTLVIADSRRIEVIERVRNAC 478 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538 +G++AYW+C IEE +E ++ F L + +IHGRM +K +VMD FK Sbjct: 479 QQGRQAYWVCTLIEESEELTCQAAETSFEELSAALGELRVGLIHGRMKPAEKAAVMDEFK 538 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLYH Sbjct: 539 QGHLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHA 598 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PLS+ RL++++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A LL Sbjct: 599 PLSQLGRERLAIMRETTDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPA 658 Query: 659 ARKDAKHILTQDP 671 R A+ +L P Sbjct: 659 VRDAAQALLEHWP 671 >gi|166368534|ref|YP_001660807.1| ATP-dependent DNA helicase RecG [Microcystis aeruginosa NIES-843] gi|166090907|dbj|BAG05615.1| DNA recombinase [Microcystis aeruginosa NIES-843] Length = 822 Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust. Identities = 254/684 (37%), Positives = 404/684 (59%), Gaps = 29/684 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL VG++ + L K+ N + DLL+Y+P ID + I+ ++E VT Sbjct: 128 PLKYLAEVGERKAGLLEKL------NLHKVEDLLYYYPRDHIDYSRQVNIANLTEGETVT 181 Query: 72 ITGYISQHSSFQLQKRRP---YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK------ 122 + G + + + F K +++LL D TG+I L FY T + EG+K Sbjct: 182 LVGNVKRCNCFTSPKNTKLAIFELLLQDRTGQIKLNRFYAGTRYTNRAWQEGQKKLYLVG 241 Query: 123 --ITVTGKIKKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTGLSVDLFKKII 175 + V+G +K K + + +P + +S + + I VY L G+ DL +K + Sbjct: 242 SVVAVSGLVKAGKYGLTLENPEFELLDSSGASIESLKIGRILPVYPLTDGVPADLIRKAV 301 Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235 V A + + + + L ++ + A IH P A E S AR RL +DE Sbjct: 302 VAAFGAVEAIKDPLPFGLRKQYGLIDLKTAITNIHFPNNA---EILSQARRRLVFDEFFF 358 Query: 236 GQIALLLMRKQFKKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 Q+ L R+Q+++ I + +G++ + + IPF T +Q+ I++IL+D+ M Sbjct: 359 LQLGFLRRRQQYRQTQKSAIFSAKGQLIDQFNQIIPFQLTNAQKRVIEEILEDLDSSTPM 418 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R++QGDVGSGKT+V + A+ AA+++G QA +MAP +LA+QHY + + + VE+ Sbjct: 419 NRLVQGDVGSGKTIVGVYAILAALQSGYQAALMAPTEVLAEQHYRKLVSWFNLLHLPVEL 478 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 +TG+ A RR+ ++ G+ +++GTHAL QD++ + KL LV++DEQHRFGVQQR +L Sbjct: 479 LTGSTKTAKRREIHAQLETGELPLLVGTHALIQDAVNFRKLGLVVIDEQHRFGVQQRARL 538 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 K +PHVL MTATPIPRTL LT GD+D+S+I E P GR+PI+T + N+ + Sbjct: 539 LSKGESPHVLTMTATPIPRTLALTLHGDLDVSQIDELPPGRQPIQTTALNGNQRRAAYDL 598 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKES 532 ++ +++G++AY I P IEE ++ + R+ VE + +L E +I ++HGRMS +KE Sbjct: 599 IRREIAQGRQAYVIFPLIEESEKLDVRAAVEEYQNLSEKIFPNFNIGLLHGRMSSAEKEE 658 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 ++ +F++ +++++TTVIEVG+DV +A++++IENAE FGL+QLHQLRGRVGRG S C Sbjct: 659 ILTAFRDNILQIIVSTTVIEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGSHQSYC 718 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +LL S NS RL+VL+ ++DGF I+E D++ R GE+LG +QSG+P F +A Sbjct: 719 LLLSGSN-SANSRQRLTVLEQSQDGFFISEMDMRFRGPGEVLGQRQSGLPDFALASLVED 777 Query: 653 DSLLEIARKDAKHILTQDPDLTSV 676 +L +AR A+ I+ DP L ++ Sbjct: 778 QEVLVLARDAAEKIMLDDPHLITL 801 >gi|88705445|ref|ZP_01103156.1| ATP-dependent DNA helicase RecG [Congregibacter litoralis KT71] gi|88700535|gb|EAQ97643.1| ATP-dependent DNA helicase RecG [Congregibacter litoralis KT71] Length = 686 Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust. Identities = 256/667 (38%), Positives = 385/667 (57%), Gaps = 17/667 (2%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L + RGVG K + L + G +N DLLF+ P + DR I + + V I Sbjct: 9 LESLRGVGPKMAERLQRY---GISN---VEDLLFHLPLRYQDRTQVTPIGALQDGAEVVI 62 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G ++ S +RR + L DGTG TL FF+ ++ KN +G ++ G +++ Sbjct: 63 EGDVALVSVSGGGRRRSLIVKLQDGTGTATLRFFH-FSQAQKNALQQGDRLRCFGTVRRG 121 Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKD 192 + M+HP Y N + +Y G+S ++K+ +ALS L P E+ Sbjct: 122 AQQAEMIHPEYRRSIHISDNEESLTPIYPSTEGVSQGQWRKLSDQALSVLAKHPP--EEL 179 Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFK 248 L +++ ++ A +H P D + PA+ RLA +EL A Q+++ MR + + Sbjct: 180 LPVRENDYGLSSALRFLHRPPPEADQQALRDGRHPAQLRLALEELTAHQLSMREMRARSR 239 Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 + + ++Q L+ +PF PT +Q +++I D++ + MLR++QGDVGSGKT+ Sbjct: 240 ERAAPVLRDSKALSQHFLKALPFEPTAAQLRVMEEITADLATEKPMLRLVQGDVGSGKTV 299 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VA A A+ +G Q +MAP +LA+QH + I + G++ R +AL Sbjct: 300 VAAAAALIAIASGYQVAVMAPTELLAEQHRRNFAGWFSPLNISQMWLAGSVKGQKREQAL 359 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK---ATAPHVLL 425 I G+A ++IGTHALFQD +++ L LVIVDEQHRFGV QRL L++K A H L+ Sbjct: 360 AAIESGEASLVIGTHALFQDGVEFAHLGLVIVDEQHRFGVHQRLALSEKTGGAWRAHQLI 419 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL + + D+D S I E P GR+P+ TV+I R E+IER+ + EG++ Sbjct: 420 MTATPIPRTLSMVAYADLDCSIIDELPPGRQPVGTVLIDNQRRQEIIERVAIACREGRQV 479 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKL 544 YW+C IE+ ++ F L E ++A++HGRM +K++VM +FK G +L Sbjct: 480 YWVCTLIEDSDTLQAQAAESSFAELAEALDGIAVAMVHGRMKAKEKDAVMSAFKAGHYQL 539 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 L+ATTVIEVG+DV +A+++IIEN E GLAQLHQLRGRVGRG S C+LLY PL + S Sbjct: 540 LVATTVIEVGVDVPNATLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYQSPLGQQS 599 Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 RL V++ + DGF IAEEDL+QR GE+LG +Q+G+ +F +A+ H+ LLE ++ A+ Sbjct: 600 RARLQVMRESNDGFYIAEEDLRQRGPGEVLGTRQTGLMEFRVARLPEHEHLLEEVQEIAE 659 Query: 665 HILTQDP 671 + + P Sbjct: 660 ALQQEHP 666 >gi|307262320|ref|ZP_07543968.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306867983|gb|EFM99811.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 693 Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust. Identities = 268/678 (39%), Positives = 387/678 (57%), Gaps = 26/678 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+ GVG + LS+I N DLLF+ P + DR I ++ E T Sbjct: 10 PLTALSGVGAAIAEKLSRI-GINNVQ-----DLLFHLPYRYEDRTRITPIIDVRPESFST 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G I Q + Q +R +L+DGT +ITL FF M KN G ++ G+IK+ Sbjct: 64 IEG-IVQLTEVQFGRRPILSTVLSDGTSKITLKFFNFNAGM-KNSLTAGTRVKAFGEIKR 121 Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + + HP Y I N+Q + + +YS GL + +K+ +AL+ +L + Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQNSLRKLTEQALA---LLDKIK 178 Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALLL 242 +LL + P S+ EA ++H P A+ E PA++RL ++ELLA +A+ Sbjct: 179 VGELLPDEYNPHKYSLKEALQLLHRPPPDISAEQLEKGDHPAQKRLIFEELLAHNLAMQQ 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R + P+ + + + L ++PF PT +Q DI QD+++ + M+R++QGDV Sbjct: 239 VRVGVNQLTATPLCYQTDLKSRFLASLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A++ G Q +MAP ILA+QH + + I V + G + Sbjct: 299 GSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R LE I +G+ +IIGTHALFQ+ ++++ L LVI+DEQHRFGV QRL L +K Sbjct: 359 ARTAQLEAIKNGEVQMIIGTHALFQERVEFHNLALVIIDEQHRFGVHQRLTLREKGAKDG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH L+MTATPIPRTL +T D+D S I E P GR PI TV I +R DE++ R+ Sbjct: 419 IYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAA 478 Query: 479 L-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 +E ++AYW+C I+E + ++ L I ++HGRM +K+++M Sbjct: 479 CKNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQAIMAE 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK LL+ATTVIEVG+DV +AS++IIEN+E GLAQLHQLRGRVGRG S C+LLY Sbjct: 539 FKAANIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PPL K S RL VL++++DGF IAE+DL+ R GEILG KQ+GM +F +A ++ Sbjct: 599 KPPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVANLMRDRKMI 658 Query: 657 EIARKDAKHILTQDPDLT 674 + + AK I+ Q+P L Sbjct: 659 PLVQNYAKQIIQQNPPLA 676 >gi|165977264|ref|YP_001652857.1| ATP-dependent DNA helicase RecG [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165877365|gb|ABY70413.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 693 Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust. Identities = 267/678 (39%), Positives = 385/678 (56%), Gaps = 26/678 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+ GVG + LS+I N DLLF+ P + DR I ++ E T Sbjct: 10 PLTALSGVGAAIAEKLSRI-GINNVQ-----DLLFHLPYRYEDRTRITPIIDVRPESFST 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G I Q + Q +R +L+DGT +ITL FF M KN G ++ G+IK+ Sbjct: 64 IEG-IVQVTEVQFGRRPILSTVLSDGTSKITLKFFNFNAGM-KNSLTAGTRVKAFGEIKR 121 Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + + HP Y I N+Q + + +YS GL + +K+ +AL+ +L + Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQNSLRKLTEQALA---LLDKIK 178 Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242 +LL + P S+ A ++H P + E PA++RL ++ELLA +A+ Sbjct: 179 VGELLPDEYNPHKYSLKGALQLLHRPPPSVSAEQLEKGEHPAQKRLIFEELLAHNLAMQQ 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R + P+ + + + L ++PF PT +Q DI QD+++ + M+R++QGDV Sbjct: 239 VRVGVNQLTATPLRYQTDLKSRFLASLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A++ G Q +MAP ILA+QH + + I V + G + Sbjct: 299 GSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R LE I +G+ +IIGTHALFQ+S++++ L LVI+DEQHRFGV QRL L +K Sbjct: 359 ARTAQLEAIKNGEVQMIIGTHALFQESVEFHNLALVIIDEQHRFGVHQRLTLREKGAKDG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH L+MTATPIPRTL +T D+D S I E P GR PI TV I +R DE++ R+ Sbjct: 419 IYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAA 478 Query: 479 L-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 +E ++AYW+C I+E + ++ L I ++HGRM +K+ +M Sbjct: 479 CKNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQEIMAE 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK LL+ATTVIEVG+DV +AS++IIEN+E GLAQLHQLRGRVGRG S C+LLY Sbjct: 539 FKAANIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PPL K S RL VL++++DGF IAE+DL+ R GEILG KQ+GM +F +A ++ Sbjct: 599 KPPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVANLMRDRKMI 658 Query: 657 EIARKDAKHILTQDPDLT 674 + + AK I+ Q+P L Sbjct: 659 PLVQNYAKQIIQQNPPLA 676 >gi|83648946|ref|YP_437381.1| ATP-dependent DNA helicase RecG [Hahella chejuensis KCTC 2396] gi|83636989|gb|ABC32956.1| ATP-dependent DNA helicase RecG [Hahella chejuensis KCTC 2396] Length = 688 Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust. Identities = 256/685 (37%), Positives = 397/685 (57%), Gaps = 41/685 (5%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+ +GVG + L+K+ DLLF+ P + DR +++ +++ R+ Sbjct: 6 PLTELKGVGPALAEKLAKL------GLHTVQDLLFHLPLRYEDR---TRVTPVAQVRV-- 54 Query: 72 ITGYISQ------HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 G +Q S +L ++R + + D +GEI L F+Y T KN F GRK Sbjct: 55 --GMPAQVEATVVDSRVELGRKRSLLVRVRDDSGEIGLRFYY-FTAQQKNRFSPGRKFLC 111 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-----IEAVYSLPTGLSVDLFKKIIVEALS 180 G+ + ++ + M HP D P + +Y GL + + +AL+ Sbjct: 112 YGEARLGRSGLEMYHPET---TQVDELKPAEMEQRLTPIYPTTEGLMQKRLRDLCQQALT 168 Query: 181 RLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELL 234 + P +W+ ++L P + A + +H+P + E P ++RL +ELL Sbjct: 169 LMRRYPIKDWLPQELRSHYQMPELNAALDYLHHPPVGANVTALAESRHPNQQRLVAEELL 228 Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 A ++LL +R++ + + P G + Q+ + +PF+ T +Q+ I +I QD+ M Sbjct: 229 AHHLSLLQLRQEVQSQPA-PALRAGVLQQRFIEQLPFALTGAQKRVIGEIEQDVRAMVPM 287 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 LR++QGDVGSGKT+VA + A+EAG QA +MAP IL++QHY+ + ++ + + V Sbjct: 288 LRLVQGDVGSGKTVVAAASALCAIEAGHQAALMAPTEILSEQHYKTLSQWLEPLGVSVVW 347 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 + G + + R+K L+ I+ G A + IGTHALFQD +++ +L L I+DEQHRFGV QRL L Sbjct: 348 LNGKLKASERQKVLDAISSGAAQLAIGTHALFQDQVEFARLGLAIIDEQHRFGVHQRLSL 407 Query: 415 TQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470 +K APH L+MTATPIPRTL +++ D+D S I E P GR P+ T +IP + D+ Sbjct: 408 REKGARSGQAPHQLIMTATPIPRTLAMSAYADLDTSVIDELPPGRTPVVTAVIPDIKRDD 467 Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDID 529 V+ER++ V EG++AYW+C IEE + ++ +L E + ++HGRM + Sbjct: 468 VVERVRKVCLEGRQAYWVCTLIEESEVLQCQAAEATAANLAEALPDLRVGLVHGRMKAAE 527 Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589 K +VMD FK+ LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG Sbjct: 528 KTAVMDDFKHNRLHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSHE 587 Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649 S C+L+YHPPLS R+ V++++ DGF+IAE+DL+ R GE+LG +Q+G+ +F IA Sbjct: 588 SYCVLMYHPPLSLAGKARMQVMRDSNDGFVIAEKDLEIRGPGEVLGTRQTGLIQFRIADL 647 Query: 650 ELHDSLLEIARKDAKHILTQDPDLT 674 + L + ++ A ++ Q PD+T Sbjct: 648 QRDRQWLPVVKEMALSVIDQ-PDVT 671 >gi|330505643|ref|YP_004382512.1| ATP-dependent DNA helicase RecG [Pseudomonas mendocina NK-01] gi|328919929|gb|AEB60760.1| ATP-dependent DNA helicase RecG [Pseudomonas mendocina NK-01] Length = 691 Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust. Identities = 254/674 (37%), Positives = 392/674 (58%), Gaps = 24/674 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +GVG + L+K+ G N D+LF+ P + DR I + + Sbjct: 8 PVTALKGVGAALAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRITPIGALRPGQDAV 61 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G ++ + + +RR + L DG+G ++L FF+ ++ K G + G+++ Sbjct: 62 VEGIVA-GADVVMGRRRSLLVRLQDGSGTLSLRFFH-FSQAQKEGLKRGTALRCYGEVRP 119 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLP--VLP 186 + + HP Y S D P+ + +Y GL+ +++ +AL+RL LP Sbjct: 120 GATGLEIYHPEY-RAQSGDEPAPVEQSLTPIYPTTEGLTQQRLRQLSQQALARLGPRSLP 178 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE----RLAYDELLAGQIALLL 242 +W+ +L + + EA +H P D E + R RLA++ELL Q++L Sbjct: 179 DWLPDELARDYRLAPLDEAIRYLHRPPPDADVEELAEGRHWAQHRLAFEELLTHQLSLQR 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R+Q + + + K+ Q+ L N+ F+PT +Q+ +I D++Q MLR++QGDV Sbjct: 239 LREQVRAQQAPALPPAKKLPQQYLANLGFAPTGAQQRVGAEIAYDLAQSEPMLRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 G+GKT+VA +A A+EAG Q +MAP ILA+QH+ K+ + V + G + Sbjct: 299 GAGKTVVAALAALQALEAGYQVALMAPTEILAEQHFLNFSKWLAPLGLEVAWLAGKLKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--- 419 R AL++IA G +++GTHALFQD +++ +L LVI+DEQHRFGVQQRL L QK Sbjct: 359 ARAAALDQIAAG-CPMVVGTHALFQDEVKFKRLALVIIDEQHRFGVQQRLALRQKGIDGR 417 Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 +PH L+MTATPIPRTL +++ D+D S + E P GR P+ T++I +R EV+ER++ Sbjct: 418 LSPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTLVIADSRRIEVVERVRNA 477 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 +G++AYW+C IEE +E ++ + L + +IHGRM +K +VM+ F Sbjct: 478 CQQGRQAYWVCTLIEESEELTCQAAETSYEELSAALGELRVGLIHGRMKPAEKAAVMEEF 537 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 K G+ +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLYH Sbjct: 538 KQGSLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYH 597 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PLS+ RL++++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A LL Sbjct: 598 APLSQLGRERLAIMRETTDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLP 657 Query: 658 IARKDAKHILTQDP 671 R A+ +L P Sbjct: 658 AVRDAAQALLEHWP 671 >gi|330812612|ref|YP_004357074.1| ATP-dependent DNA helicase, recG [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380720|gb|AEA72070.1| ATP-dependent DNA helicase, recG [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 691 Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust. Identities = 262/681 (38%), Positives = 392/681 (57%), Gaps = 30/681 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++T +GVG+ + L+K+ G N D+LF+ P + DR I + + Sbjct: 8 PVTTLKGVGEAMAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRVVPIGHLRPGQDAV 61 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G +S + + +RR + L DGTG ++L FY + K G ++ G+ + Sbjct: 62 IEGTVSG-ADVVMGRRRSLVVRLQDGTGGLSL-RFYHFSNAQKEGLKRGTRVRCYGEARP 119 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRL--PVLP 186 + + + HP Y + D P+ E VY L GL+ +++ + L+ L LP Sbjct: 120 GASGLEIYHPEY-RAITGDEPPPVDETLTPVYPLTEGLTQQRLRQLCQQTLTLLGPSSLP 178 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIA 239 +W+ +L + +A+A +H+P D + W A+ RLA++ELL Q++ Sbjct: 179 DWLPTELARDYHLAPLADAIRYLHHPPADADVDELALGHHW---AQHRLAFEELLTHQLS 235 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 +R+ + + + + L N+ F+PT +Q+ +I D+SQ MLR++Q Sbjct: 236 QQRLRESLRSLRAPAMPKARDLPARYLANLGFTPTGAQQRVGNEIAYDLSQPEPMLRLIQ 295 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG+GKT+VA +A A+EAG Q +MAP ILA+QH+ +++ + I V + G + Sbjct: 296 GDVGAGKTVVAALAALQALEAGYQVALMAPTEILAEQHFITFQRWLEPLGIEVAWLAGKL 355 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +R AL +IA G A +++GTHALFQD +Q+ L LVI+DEQHRFGVQQRL L QK Sbjct: 356 KGKNRTTALAQIAEG-APMVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRQKGV 414 Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 PH L+MTATPIPRTL +++ D+D S + E P GR P+ TV++ R EVIER+ Sbjct: 415 GGRMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVTDTRRVEVIERV 474 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 + +EG++AYW+C IEE +E ++ + L + +IHGRM +K +VM Sbjct: 475 RSACAEGRQAYWVCTLIEESEELTCQAAETTYEDLTAALGELKVGLIHGRMKPAEKAAVM 534 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 FK G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+L Sbjct: 535 AEFKAGALQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVL 594 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 LYHPPLS+ RL +++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A Sbjct: 595 LYHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDAD 654 Query: 655 LLEIARKDAKHILTQDPDLTS 675 LL R A+ +L + PD S Sbjct: 655 LLPAVRDAAQALLERWPDHVS 675 >gi|257454372|ref|ZP_05619635.1| ATP-dependent DNA helicase RecG [Enhydrobacter aerosaccus SK60] gi|257448275|gb|EEV23255.1| ATP-dependent DNA helicase RecG [Enhydrobacter aerosaccus SK60] Length = 717 Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust. Identities = 258/710 (36%), Positives = 395/710 (55%), Gaps = 58/710 (8%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 ++P N P++ GVG K + L ++ R DLL + P + DR Sbjct: 3 LKPDIFN---LPVTALAGVGSKIAEQLDQL------GIERVFDLLLHLPRDYEDRSRLVN 53 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF--YRKTEMLKNVFF 118 + ++ + + + G + + + K+ + L D T + TL FF YR L + Sbjct: 54 MCDVVDGQSALLQGTVVRVDN----KKMGLSVTLQDRTAQTTLRFFKVYRG---LTDTMA 106 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + V G+I K + HP Y I Q + + VY L + + +I Sbjct: 107 VGNTLRVFGEISISKYGTQISHPEYEIITGHQPLTNTGLIPVYPTVKNLHQNKLRSLIRL 166 Query: 178 ALSRL----PVLP-----EW--IEKDLLQKKSFP------------SIAEAFNIIHNPRK 214 AL + PV+ +W ++ L Q+ FP S+ EA + IH P Sbjct: 167 ALQTVKQANPVMATISDADWQIVQSALSQQ--FPLLAGSHNPFGEFSLLEAISFIHQPPI 224 Query: 215 AKDFE-----------WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQ 263 D + P +RL +E+LA Q++LL ++Q + + +A Sbjct: 225 YTDLNKQILVLEALKNRSHPTCQRLIIEEMLAHQLSLLYRKQQLYQHKAPRCDATSALAN 284 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 ++L N+PF+PT +Q + +I++D+S MLR++QGDVG+GKTLVA +A A+++G Q Sbjct: 285 RLLANLPFTPTHAQNRVVAEIVKDLSTSVPMLRLVQGDVGAGKTLVAALAACYALDSGWQ 344 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 +MAP ILA+QH K + + I V + G R KAL+++ + I++GTH Sbjct: 345 VAVMAPTEILAEQHLNNFKNWFEPLGIGVGWLAGKQTAKAREKALQQVQDNEVQIVVGTH 404 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA---TAPHVLLMTATPIPRTLVLTSL 440 ALFQ+ + + KL LVI+DEQHRFGV+QR+ L K T PH L+MTATPIPRTL +++ Sbjct: 405 ALFQEHVNFAKLGLVIIDEQHRFGVEQRMALVDKGLAHTTPHQLIMTATPIPRTLAMSAF 464 Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500 GD+D S I E P R PI TV I +R DEVIER+ V +GK+AYW+CP +EE + Sbjct: 465 GDMDTSIIDELPPNRTPITTVTISRDRRDEVIERIAVNCEQGKQAYWVCPLVEESTMLDA 524 Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560 ++ + L++ +I ++HG+M DK++VM FK G LL+ATTVIEVG+DV +A Sbjct: 525 QAAEATYADLNDRLNLNIGLVHGKMKPNDKQAVMADFKAGKTALLVATTVIEVGVDVPNA 584 Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620 S+++IENAE GL+QLHQLRGRVGRG + S C+LLY PLS+ RL+VL+++ DGF+I Sbjct: 585 SLMVIENAERLGLSQLHQLRGRVGRGTQKSFCVLLYQTPLSETGIERLNVLRDSNDGFVI 644 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670 A++DL+ R GE+LG +Q+G + ++ +SLL +A+ AK+++ + Sbjct: 645 AQKDLELRGAGELLGKRQTGFDSYYVSDLARDESLLIVAQAIAKYLIADE 694 >gi|229524689|ref|ZP_04414094.1| ATP-dependent DNA helicase RecG [Vibrio cholerae bv. albensis VL426] gi|229338270|gb|EEO03287.1| ATP-dependent DNA helicase RecG [Vibrio cholerae bv. albensis VL426] Length = 692 Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust. Identities = 264/675 (39%), Positives = 392/675 (58%), Gaps = 26/675 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL GVG K + L K+ DLLF+ P + DR I ++ Sbjct: 9 PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + KR+ + ++DG G +TL FF T +KN F EG+ + G+IK+ Sbjct: 63 VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFF-NFTAAMKNNFVEGKFVHAYGEIKR 120 Query: 132 LKNRIIMVHPHYIF---HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186 + ++HP Y F + DV P + VY GL + + +AL+ L + Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVE-PNLTPVYPTTEGLRQLTLRNLTDQALALLEKSAVQ 179 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242 E + L ++ ++A+A IIH P D + PA+ RL +ELLA +++L Sbjct: 180 ELLPSGLYDQQM--TLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLA 237 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R Q ++++ +P+ ++ Q++L +PFSPTK+Q+ + +I D+ + + M+R++QGDV Sbjct: 238 IRSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDV 297 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+E G Q +MAP +LA+QH ++ + I V + G + Sbjct: 298 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHSLNFAQWLEPMGIQVGWLAGKLKGK 357 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R L RIA G+ +++GTHALFQ+ + + L LVI+DEQHRFGV QRL+L +K Sbjct: 358 ARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQG 417 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + DE++ER++ Sbjct: 418 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHA 477 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L+EGK+AYW+C I+E + ++ E L I ++HGRM +K++VM + Sbjct: 478 CLNEGKQAYWVCTLIDESEVLETQAAAETAEELQRKLPEVKIGLVHGRMKQAEKQAVMQA 537 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FKN LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL+ Sbjct: 538 FKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF 597 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 H PLSK + RL VL+ + DGF+IA+ DL+ R GE+LG KQ+G+ F IA L+ Sbjct: 598 HAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLV 657 Query: 657 EIARKDAKHILTQDP 671 ++ A+HI + P Sbjct: 658 PQVQRIARHIHERYP 672 >gi|323497035|ref|ZP_08102058.1| ATP-dependent DNA helicase RecG [Vibrio sinaloensis DSM 21326] gi|323317879|gb|EGA70867.1| ATP-dependent DNA helicase RecG [Vibrio sinaloensis DSM 21326] Length = 692 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 265/677 (39%), Positives = 402/677 (59%), Gaps = 28/677 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ G+G K + L+K+ N + DLLF+ P + DR I+++ Sbjct: 9 PLTSLTGIGAKVAEKLAKV----GLNSVQ--DLLFHLPLRYEDRTRIYPIAKLHAGLWAA 62 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + KR+ + L+DG G ITL FF T +KN F EG+ + G++K+ Sbjct: 63 VQGKVMAVDTL-FGKRKMLTVKLSDGNGTITLRFF-NFTAAMKNNFAEGKTVHAYGEVKR 120 Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188 + +VHP Y F+ DV L VY GL + + +AL+ +L + Sbjct: 121 GGYGLEIVHPDYKFYAPNQKADVEQTLT-PVYPTTDGLRQITLRNLTDQALA---LLDKA 176 Query: 189 IEKDLLQKKSFP---SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALL 241 ++LL + ++A+A + IH P + D E +PA+ RL +ELLA +++L Sbjct: 177 AVQELLPSGLYDHQLTLAQALHTIHRPPPSLDVDEFDEGKNPAQIRLIMEELLAQNLSML 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R + +++ +P+ ++ Q++L +PFSPTK+Q +K+I D+ + + M+R++QGD Sbjct: 237 AVRSKGQQDTALPLKECHQLKQQLLGQLPFSPTKAQARVVKEIEDDLLKPHPMMRLVQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+E G Q +MAP +LA+QH + + I V + G + Sbjct: 297 VGSGKTLVAALAAVRALEQGYQVALMAPTELLAEQHAINFANWFEPMDIKVGWLAGKLKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 + L RIA G+A +++GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +K Sbjct: 357 KAKDAELARIASGEAQMVVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQ 416 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + D++IER++ Sbjct: 417 GAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIIERVRH 476 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 L+EGK+AYW+C I+E + ++ + L I ++HGRM +K++VM Sbjct: 477 ACLNEGKQAYWVCTLIDESEVLEAQAAADTAEDLQRKLPEVKIGLVHGRMKPAEKQAVMQ 536 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK+ +LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 537 DFKDNKLQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLL 596 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 YH PLSK + RL+VL+ + DGF+IA+ DL+ R GE+LG KQ+GM F IA L Sbjct: 597 YHSPLSKTAQKRLAVLRESNDGFVIAQRDLEIRGPGELLGTKQTGMADFKIADLVRDQRL 656 Query: 656 LEIARKDAKHILTQDPD 672 + ++ A++I PD Sbjct: 657 IPEVQRIARYIHDNYPD 673 >gi|254228569|ref|ZP_04921994.1| ATP-dependent DNA helicase RecG [Vibrio sp. Ex25] gi|151938951|gb|EDN57784.1| ATP-dependent DNA helicase RecG [Vibrio sp. Ex25] Length = 693 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 259/671 (38%), Positives = 395/671 (58%), Gaps = 28/671 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG K + L+K+ DLLF+ P + DR I+++ Sbjct: 10 PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + KR+ + ++DG G ITL FF T +KN F +G+ + G+IK+ Sbjct: 64 VQGKVMAVDTI-FGKRKMLTVKISDGNGTITLRFF-NFTAAMKNNFTQGKLVHAYGEIKR 121 Query: 132 LKNRIIMVHPHYIFHNSQ---DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188 + +VHP Y F+ S+ DV L VY GL + + +AL+ +L + Sbjct: 122 GGVGLEIVHPDYKFYVSEQKPDVEQSLT-PVYPTTDGLRQITLRNLTEQALA---LLDKT 177 Query: 189 IEKDLLQKKSFP---SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALL 241 ++LL + ++++A + IH P + E PA+ RL +ELLA +++L Sbjct: 178 AVQELLPAGLYNHQITMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R + +K+ +P+ K+ ++L +PFSPT +Q +++I D+ + + M+R++QGD Sbjct: 238 AVRSKGQKDSALPLGPCNKLKMQLLAQLPFSPTNAQTRVVQEIETDLEKPHPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+E G Q +MAP +LA+QH + + I V + G + Sbjct: 298 VGSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFETMDIQVGWLAGKLKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 + L RIA G+A +++GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +K Sbjct: 358 KAKEAELARIASGEAQMVVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + D+++ER++ Sbjct: 418 GAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRN 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 L+EGK+AYW+C I+E + ++ + L I ++HGRM +K++VM Sbjct: 478 ACLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQ 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK+ LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 DFKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 YH PLSK + RL VL+ + DGF+IA++DL+ R GE+LG KQ+G+ F IA L Sbjct: 598 YHSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIADLVRDQRL 657 Query: 656 LEIARKDAKHI 666 + ++ A+HI Sbjct: 658 IPEVQRIARHI 668 >gi|269959395|ref|ZP_06173778.1| ATP-dependent DNA helicase RecG [Vibrio harveyi 1DA3] gi|269835832|gb|EEZ89908.1| ATP-dependent DNA helicase RecG [Vibrio harveyi 1DA3] Length = 693 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 257/652 (39%), Positives = 388/652 (59%), Gaps = 28/652 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG K + L+K+ DLLF+ P + DR I+++ Sbjct: 10 PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63 Query: 72 ITGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 I G + + ++F KR+ + ++DG G ITL FF T +KN F G+ + G+IK Sbjct: 64 IQGKVMAVDTTFG--KRKMLTVKISDGNGTITLRFF-NFTAAMKNNFSNGKLVHAYGEIK 120 Query: 131 KLKNRIIMVHPHYIFHNSQ---DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVL 185 + + +VHP Y F+ S+ DV L VY GL + + +ALS L + Sbjct: 121 RGGMGLEIVHPDYKFYVSEQKPDVEQSLT-PVYPTTDGLRQITLRNLTEQALSLLDKAAV 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALL 241 E + L + ++++A + IH P + E PA+ RL +ELLA +++L Sbjct: 180 QELLPSGLYNHQI--TMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R + ++++ +P+ + +++L +PFSPT +Q +K+I D+ + + M+R++QGD Sbjct: 238 AVRSKGQQDVALPLASRDSLKKQLLAQLPFSPTNAQARVVKEIEADLEKNHPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+E G Q +MAP +LA+QH + + I V + G + Sbjct: 298 VGSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFEKMGIQVGWLAGKLKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 + L RIA G+A +++GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +K Sbjct: 358 KAKEAELARIASGEAKMVVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + D+++ER++ Sbjct: 418 GAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRN 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 L+EGK+AYW+C I+E + ++ + L I ++HGRM +K++VM Sbjct: 478 ACLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQ 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK+ LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 DFKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 YH PLSK + RL VL+ + DGF+IA++DL+ R GE+LG KQ+G+ F IA Sbjct: 598 YHSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIA 649 >gi|190151182|ref|YP_001969707.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307264531|ref|ZP_07546115.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189916313|gb|ACE62565.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870130|gb|EFN01890.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 693 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 270/681 (39%), Positives = 388/681 (56%), Gaps = 32/681 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+ GVG + LS+I N DLLF+ P + DR I ++ E T Sbjct: 10 PLTALSGVGVAIAEKLSRI-GINNVQ-----DLLFHLPYRYEDRTRITPIIDVRPESFST 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G I Q + Q +R +L+DGT +ITL FF M KN G ++ G+IK+ Sbjct: 64 IEG-IVQVTEVQFGRRPILSTVLSDGTSKITLKFFNFNAGM-KNSLTAGTRVKAFGEIKR 121 Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLP------ 183 + + HP Y I N+Q + + +YS GL + +K+ +AL+ L Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQNSLRKLTEQALALLDKIKVGE 181 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIA 239 +LP+ E +L + S+ EA ++H P A+ E PA++RL ++ELLA +A Sbjct: 182 LLPD--EYNLHKY----SLKEALQLLHRPPPDISAEQLEKGEHPAQKRLIFEELLAHNLA 235 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 + +R + P+ + + + L ++PF PT +Q DI QD+++ + M+R++Q Sbjct: 236 MQQVRVGVNQLTATPLCYQTDLKSRFLASLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQ 295 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKTLVA +A A++ G Q +MAP ILA+QH + + I V + G + Sbjct: 296 GDVGSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKV 355 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R LE I +G+ +IIGTHALFQ+S++++ L LVI+DEQHRFGV QRL L +K Sbjct: 356 KGKARTAQLEAIKNGEVQMIIGTHALFQESVEFHNLALVIIDEQHRFGVHQRLTLREKGA 415 Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 PH L+MTATPIPRTL +T D+D S I E P GR PI TV I +R DE++ R+ Sbjct: 416 KDGIYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRV 475 Query: 476 KVVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533 +E ++AYW+C I+E + ++ L I ++HGRM +K+ + Sbjct: 476 YAACKNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQEI 535 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M FK LL+ATTVIEVG+DV +AS++IIEN+E GLAQLHQLRGRVGRG S C+ Sbjct: 536 MAEFKAANIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCV 595 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 LLY PPL K S RL VL++++DGF IAE+DL+ R GEILG KQ+GM +F +A Sbjct: 596 LLYKPPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVANLMRDR 655 Query: 654 SLLEIARKDAKHILTQDPDLT 674 ++ + + AK I+ Q+P L Sbjct: 656 KMIPLVQNYAKQIIQQNPPLA 676 >gi|262392640|ref|YP_003284494.1| ATP-dependent DNA helicase RecG [Vibrio sp. Ex25] gi|262336234|gb|ACY50029.1| ATP-dependent DNA helicase RecG [Vibrio sp. Ex25] Length = 689 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 259/671 (38%), Positives = 395/671 (58%), Gaps = 28/671 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG K + L+K+ DLLF+ P + DR I+++ Sbjct: 6 PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 59 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + KR+ + ++DG G ITL FF T +KN F +G+ + G+IK+ Sbjct: 60 VQGKVMAVDTI-FGKRKMLTVKISDGNGTITLRFF-NFTAAMKNNFTQGKLVHAYGEIKR 117 Query: 132 LKNRIIMVHPHYIFHNSQ---DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188 + +VHP Y F+ S+ DV L VY GL + + +AL+ +L + Sbjct: 118 GGVGLEIVHPDYKFYVSEQKPDVEQSLT-PVYPTTDGLRQITLRNLTEQALA---LLDKT 173 Query: 189 IEKDLLQKKSFP---SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALL 241 ++LL + ++++A + IH P + E PA+ RL +ELLA +++L Sbjct: 174 AVQELLPAGLYNHQITMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSML 233 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R + +K+ +P+ K+ ++L +PFSPT +Q +++I D+ + + M+R++QGD Sbjct: 234 AVRSKGQKDSALPLGPCNKLKMQLLAQLPFSPTNAQTRVVQEIETDLEKPHPMMRLVQGD 293 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+E G Q +MAP +LA+QH + + I V + G + Sbjct: 294 VGSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFETMDIQVGWLAGKLKG 353 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 + L RIA G+A +++GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +K Sbjct: 354 KAKEAELARIASGEAQMVVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQ 413 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + D+++ER++ Sbjct: 414 GAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRN 473 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 L+EGK+AYW+C I+E + ++ + L I ++HGRM +K++VM Sbjct: 474 ACLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQ 533 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK+ LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 534 DFKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLL 593 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 YH PLSK + RL VL+ + DGF+IA++DL+ R GE+LG KQ+G+ F IA L Sbjct: 594 YHSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIADLVRDQRL 653 Query: 656 LEIARKDAKHI 666 + ++ A+HI Sbjct: 654 IPEVQRIARHI 664 >gi|237807017|ref|YP_002891457.1| ATP-dependent DNA helicase RecG [Tolumonas auensis DSM 9187] gi|237499278|gb|ACQ91871.1| ATP-dependent DNA helicase RecG [Tolumonas auensis DSM 9187] Length = 689 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 266/677 (39%), Positives = 384/677 (56%), Gaps = 31/677 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P+S +GVG K + L+ + DLLF+ P + DR I+E+S + T Sbjct: 7 PVSMLKGVGSKLAEKLAHL------RLHTVQDLLFHLPLRYEDRTRLYPIAELSADHACT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 G I Q Q KRR ++DG G +TL FF+ T KN GR+I G+IK+ Sbjct: 61 TEGVI-QSCDIQQGKRRMLLCRISDGNGSLTLRFFH-FTAGQKNALAIGRRIRCFGEIKR 118 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL-----IEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186 + +VHP Y D + PL + VY GL + + +AL +L Sbjct: 119 GLHGFEIVHPEYKL---LDDDAPLDTDATLTPVYPTTEGLRQASLRNLTDQALQ---LLK 172 Query: 187 EWIEKDLLQKKSFP---SIAEAFNIIHNPRK----AKDFEWTSPARERLAYDELLAGQIA 239 E K+LL + +P S+++A ++H P A+ PA++RLA +EL+A + Sbjct: 173 ENGVKELLPEGLYPRQLSLSDALLLLHRPPPDISLAQLENGQHPAQQRLALEELIAHHLT 232 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 +L +R ++ P+ + + +++L ++PF PT +Q+ + +I D++ + M+R++Q Sbjct: 233 VLQLRYSVQQHQARPLATDWSLCEQLLAHLPFKPTGAQQRVVSEISHDLTLPHPMMRLVQ 292 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKTLVA +A + GGQ V+MAP +LA+QH + I + G + Sbjct: 293 GDVGSGKTLVAALAALQVIAHGGQVVLMAPTELLAEQHANNFSNWLTPLGIETGWLAGKI 352 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R K LE I GQ +++GTHA+FQD +++ +L+LVIVDEQHRFGV QRL L +K Sbjct: 353 KGKAREKQLEAIRSGQVKMVVGTHAVFQDQVEFQQLLLVIVDEQHRFGVHQRLALREKGA 412 Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 PH L+MTATPIPRTL +T D+D S I E P GR PI TV +P R + VIER+ Sbjct: 413 QDGVYPHQLIMTATPIPRTLAMTIYADLDTSIIDELPPGRTPITTVALPDTRRETVIERV 472 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVER-FNSLHEHFTSSIAIIHGRMSDIDKESVM 534 + EG++AYW+C IEE + ++ I ++HGRM +K+ VM Sbjct: 473 RQACLEGRQAYWVCTLIEESEVLECQAAENTAEELQLLLPELHIGLVHGRMKPAEKQRVM 532 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+L Sbjct: 533 QEFKEGILHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVL 592 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 LYH PLSK + RL VL+++ DGF+IA++DL+ R GE+LG KQ+G+ IA + Sbjct: 593 LYHAPLSKTAQQRLGVLRDSNDGFVIAQKDLELRGPGEMLGAKQTGLADLKIADLIRDQA 652 Query: 655 LLEIARKDAKHILTQDP 671 L+ ++ A+ I Q P Sbjct: 653 LIPQVQQLAQRIFQQYP 669 >gi|15604444|ref|NP_220962.1| ATP-dependent DNA helicase RECG (recG) [Rickettsia prowazekii str. Madrid E] gi|3861138|emb|CAA15038.1| ATP-DEPENDENT DNA HELICASE RECG (recG) [Rickettsia prowazekii] Length = 724 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 269/694 (38%), Positives = 392/694 (56%), Gaps = 36/694 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 LFAP+ F + + +S + G N DLLFY P S+ ++ P ++++ Sbjct: 31 LFAPVKAFINIREDT---VSALKRLGIKN---IRDLLFYLPVSYQNKILSPNLTKVRGGE 84 Query: 69 IVTITGYISQHSSFQLQKR--RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 I+ ++ S LQKR +P KI ++ TG + L+FF++ + + N G K ++ Sbjct: 85 IIQTEIIVN---SINLQKRGNQPLKITASNNTGSLLLVFFHKPPQFILNKLKVGTKHIIS 141 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186 GK++ ++ ++HP +I + IE +YS+ LS I++A+ Sbjct: 142 GKVQFFDYQLQILHPEFITNPQLS---KAIEPLYSMTYSLSNTQLYSYIIKAIEIFEEKC 198 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIH---NPRKAKDFEWTS-----------PARERLAYDE 232 IE L K+ I + I+H +P T+ A+++LA E Sbjct: 199 NGIEDKEL-KEYLDVILQNLKILHVFLSPHNLISCSRTTDIVVNPSYAIVAAKKQLAIKE 257 Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292 L+A QI+LL +R Q ++ G I + ILR + F T Q+ I++I + S K Sbjct: 258 LIANQISLLNVRMQINRKHGNIYPKAASIQENILRELGFELTYYQKQVIEEIEFEQSDKV 317 Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352 M+R+LQGDVGSGKTLVAL+ M V G QA +MAP +LA QHY+F K +NT I V Sbjct: 318 EMMRLLQGDVGSGKTLVALLTMVNVVTTGFQATLMAPTDLLANQHYDFFVKALKNTNIRV 377 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 ++TG + R+ + ++ +G+ I+IGTHALFQ+ + + KL +++DEQHRFGVQQRL Sbjct: 378 GLLTGKILGKARKNIIIQLVNGKIDILIGTHALFQEKVSFKKLGYIVIDEQHRFGVQQRL 437 Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 L K P VL+MTATPIPR+L LT GD+ +SK+ KP R I T + +N+I +I Sbjct: 438 NLINKGVNPDVLIMTATPIPRSLALTMFGDMTVSKLIGKPKNRLSIVTKTMSVNKIGYII 497 Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFR------SVVERFNSLHEHFTSSIAIIHGRMS 526 + + L G++ YWICP I ++++ + V+ RFNS+ + IIHG+M Sbjct: 498 KAINKRLIAGERVYWICPLITQREKETLQEDLLLMDVINRFNSIKNIYQGYTGIIHGKMK 557 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 + KE +M FK G K+L+AT VIEVGIDV +A++I+IENAE FGLAQLHQLRGRVGRG Sbjct: 558 NDQKERIMKQFKEGEIKILVATNVIEVGIDVSEATLIVIENAEQFGLAQLHQLRGRVGRG 617 Query: 587 EEISSCILLYHPP-LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645 S CILLY+P L K + R ++K+T DGF IAE+DLK R GEILGIKQSG F Sbjct: 618 RLQSYCILLYNPKRLGKVAQNRFKIMKHTNDGFYIAEQDLKLRGSGEILGIKQSGEIDFF 677 Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679 A +LL A K A+ ++ ++ V Q Sbjct: 678 FADLAEDYALLIKAHKIAEREISLKDNVNFVNFQ 711 >gi|48727546|gb|AAT46072.1| RecG [Vibrio alginolyticus] Length = 693 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 256/652 (39%), Positives = 387/652 (59%), Gaps = 28/652 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG K + L+K+ DLLF+ P + DR I+++ Sbjct: 10 PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + KR+ + ++DG G ITL FF T +KN F G+ + G+IK+ Sbjct: 64 VQGKVMAIDT-TFGKRKMLTVKISDGNGTITLRFF-NFTAAMKNNFSNGKLVHAYGEIKR 121 Query: 132 LKNRIIMVHPHYIFHNSQ---DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188 + +VHP Y F+ S+ DV L VY GL + + +ALS +L + Sbjct: 122 GGMGLEIVHPDYKFYVSEQNPDVEQSLT-PVYPTTDGLRQITLRNLTEQALS---LLDKA 177 Query: 189 IEKDLLQKKSFP---SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALL 241 ++LL + ++++A + IH P + E PA+ RL +ELLA +++L Sbjct: 178 AVQELLPSGLYDHQITMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R + ++++ +P+ + +++L +PFSPT SQ +K+I D+ + + M+R++QGD Sbjct: 238 AVRSKGQQDVALPLASCDSLKKQLLAQLPFSPTNSQARVVKEIEADLEKTHPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+E G Q +MAP +LA+QH + + I V + G + Sbjct: 298 VGSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFEKMGIQVGWLAGKLKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 + L RIA G+A +++GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +K Sbjct: 358 KAKEAELARIASGEAQMVVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + D+++ER++ Sbjct: 418 GAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRN 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 L+EGK+AYW+C I+E + ++ + L I ++HGRM +K++VM Sbjct: 478 ACLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQ 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK+ LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 DFKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 YH PLSK + RL VL+ + DGF+IA++DL+ R GE+LG KQ+G+ F IA Sbjct: 598 YHSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIA 649 >gi|302189228|ref|ZP_07265901.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. syringae 642] Length = 691 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 256/680 (37%), Positives = 395/680 (58%), Gaps = 30/680 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 ++ +GVG+ + L+K+ ET D+LF+ P + DR I + + I Sbjct: 9 VTALKGVGEAMAEKLAKV-----GLET-LQDVLFHLPLRYQDRTRIVPIGALRPGQDAVI 62 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G +S + + KRR + L DGTG ++L FY + K G + G+ + Sbjct: 63 EGVVS-GADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120 Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187 + + + HP Y + D P+ + +Y GL+ +++ ++L+ L LP+ Sbjct: 121 ASGLEIYHPEY-RAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIAL 240 W+ ++L + S+ +A +H+P D E W A+ RLA++ELL Q++ Sbjct: 180 WLPEELARDYQLASLDDAIRYLHHPPADADVEELALGHHW---AQHRLAFEELLTHQLSQ 236 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 +R+ + + + V K+ ++ L N+ F+PT +Q+ K++ D+SQ MLR++QG Sbjct: 237 QRLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQG 296 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA +A A+EAG Q +MAP ILA+QHY +++ + + V + G + Sbjct: 297 DVGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVDVAWLAGKLK 356 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 R +LE+IA G +++GTHALFQD +Q+ L LVI+DEQHRFGVQQRL L +K Sbjct: 357 GKARVASLEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVG 415 Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PH L+MTATPIPRTL +++ D+D S + E P GR P+ TV++ +R EV+ER++ Sbjct: 416 GLMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVR 475 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +EG++AYW+C IEE +E ++ + L + +IHGRM +K ++M Sbjct: 476 AACAEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGDVRVGLIHGRMKPAEKAAIMA 535 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK G +LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG +S C+LL Sbjct: 536 EFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLL 595 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 YHPPLS+ RL +++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A L Sbjct: 596 YHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADL 655 Query: 656 LEIARKDAKHILTQDPDLTS 675 L R A+ +L + P S Sbjct: 656 LPAVRDAAQALLERWPQHVS 675 >gi|254448948|ref|ZP_05062403.1| ATP-dependent DNA helicase RecG [gamma proteobacterium HTCC5015] gi|198261485|gb|EDY85775.1| ATP-dependent DNA helicase RecG [gamma proteobacterium HTCC5015] Length = 700 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 264/688 (38%), Positives = 404/688 (58%), Gaps = 42/688 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67 L A ++ F+GVG + L+++ I+ D+LF+ P + DR I + + Sbjct: 3 LTASVTQFKGVGPALAEKLARLPIHT-------VQDVLFHLPLRYQDRTRVTPICAL-QH 54 Query: 68 RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 + +H+ +++RR + L+DGTG + L FFY ++ KN G +I G Sbjct: 55 GAEVVVEGEVEHAEIVIRRRRQMLVQLSDGTGSLVLRFFY-FSQAQKNALERGTRIRCFG 113 Query: 128 KIKKLK-NRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLP 183 + ++ R MVHP Y + + P+ A +Y G+S + +K+ +AL + Sbjct: 114 EARETALGRFEMVHPEYRY--GEQAATPMETALTPIYPATDGVSQSVLRKLTDQALEHVD 171 Query: 184 --VLPEWIEKDLLQKK--SFPSIAEAFNIIHNPRK----AKDFEWTSPARERLAYDELLA 235 +LP+ I D L + P++ EA +++H P A + +PA++RLA++ELLA Sbjct: 172 TGLLPDLIPADCLPPSLLNVPTLGEALHLLHRPPPTVSLAALAQGGNPAQQRLAFEELLA 231 Query: 236 GQIALLLMRKQFKKEIGIPI--NVE-GKIAQKILRN-----IPFSPTKSQESAIKDILQD 287 Q+++LL+R++ + E +PI N E G +Q LR +PF T++Q+ +K+I D Sbjct: 232 HQLSMLLLRQRVQSETAVPIGTNTETGAPSQNTLRRQFMQALPFQLTQAQQRVVKEIDTD 291 Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347 +++ LR++QGDVGSGKT+VA +A+ AAVE G QA +MAP +LA+QH++ + + + Sbjct: 292 IARDWPSLRLVQGDVGSGKTVVAALALLAAVECGQQAAMMAPTELLAEQHWQTLSAWFEP 351 Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407 I V ++ + A RR+ L +A G +++GTHALFQ+ + + +L L++VDEQHRFG Sbjct: 352 LGIRVGWLSSRVKGAKRRQTLAELASGDVALVVGTHALFQEEVIFQRLALLVVDEQHRFG 411 Query: 408 VQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463 V QRL L +K +PH ++MTATPIPRTL +T+ D+D S I E P GR PIKTV + Sbjct: 412 VHQRLALREKGQNSGISPHQVIMTATPIPRTLAMTAYADLDYSVIDELPPGRTPIKTVAL 471 Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIH 522 +R +VIER++ +G++ YW+C IEE + ++ + +SL E + I ++H Sbjct: 472 AESRRADVIERIRSACEQGRQVYWVCTLIEESEMVQCQAAEDTASSLAEAMPAVRIGLVH 531 Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582 GRM DKE M FK G LL+ATTVIEVG+DV +AS+++IENAE GL+QLHQLRGR Sbjct: 532 GRMKPADKERTMAQFKAGDIDLLVATTVIEVGVDVPNASLMVIENAERLGLSQLHQLRGR 591 Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642 VGRG SSC+LLY PL + + RL ++ + DGF IA EDL R GE+LG +Q+G Sbjct: 592 VGRGAVESSCVLLYKNPLGEKARRRLDTMRRSNDGFEIAREDLDMRGPGEVLGTRQTGDM 651 Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQD 670 F +A + L+ DA H L D Sbjct: 652 SFRVADLTRDEHLV-----DAIHQLAGD 674 >gi|156972947|ref|YP_001443854.1| ATP-dependent DNA helicase [Vibrio harveyi ATCC BAA-1116] gi|156524541|gb|ABU69627.1| hypothetical protein VIBHAR_00625 [Vibrio harveyi ATCC BAA-1116] Length = 693 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 257/653 (39%), Positives = 390/653 (59%), Gaps = 30/653 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG K + L+K+ DLLF+ P + DR I+++ Sbjct: 10 PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63 Query: 72 ITGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 + G + + ++F KR+ + ++DG G ITL FF T +KN F G+ + G+IK Sbjct: 64 VQGKVMAVDTTFG--KRKMLTVKISDGNGTITLRFF-NFTAAMKNNFSNGKLVHAYGEIK 120 Query: 131 KLKNRIIMVHPHYIFHNSQ---DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187 + + +VHP Y F+ S+ DV L VY GL + + +ALS +L + Sbjct: 121 RGGMGLEIVHPDYKFYVSEQKPDVEQSLT-PVYPTTDGLRQITLRNLTEQALS---LLDK 176 Query: 188 WIEKDLLQKKSFP---SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIAL 240 ++LL + ++++A + IH P + E PA+ RL +ELLA +++ Sbjct: 177 AAVQELLPSGLYDHQITMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSM 236 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L +R + +K++ +P+ + +++L +PFSPT +Q +K+I D+ + + M+R++QG Sbjct: 237 LAVRSKGQKDVALPLASCDSLKKQLLAQLPFSPTNAQARVVKEIEADLEKTHPMMRLVQG 296 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKTLVA +A A+E G Q +MAP +LA+QH + + I V + G + Sbjct: 297 DVGSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFEKMGIQVGWLAGKLK 356 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 + L RIA G+A +++GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +K Sbjct: 357 GKAKEAELARIASGEAKMVVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAK 416 Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + D+++ER++ Sbjct: 417 QGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVR 476 Query: 477 -VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 L+EGK+AYW+C I+E + ++ + L I ++HGRM +K++VM Sbjct: 477 NACLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVM 536 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 FK+ LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C+L Sbjct: 537 QDFKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVL 596 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 LYH PLSK + RL VL+ + DGF+IA++DL+ R GE+LG KQ+G+ F IA Sbjct: 597 LYHSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIA 649 >gi|218708221|ref|YP_002415842.1| ATP-dependent DNA helicase RecG [Vibrio splendidus LGP32] gi|218321240|emb|CAV17190.1| ATP-dependent DNA helicase recG [Vibrio splendidus LGP32] Length = 696 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 269/682 (39%), Positives = 389/682 (57%), Gaps = 38/682 (5%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG K + L K+ N DLLF+ P + DR I ++ Sbjct: 13 PLNSLSGVGAKVAEKLEKV-GLNNVQ-----DLLFHLPLRYEDRTRIYPIVKLHAGLWAA 66 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + H KR+ + ++DG G ITL FF T +KN F EG+++ G+IK+ Sbjct: 67 VQGKV-MHVDTIFGKRKMLAVKISDGNGTITLRFF-NFTAGMKNNFAEGKQVHAYGEIKR 124 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA----VYSLPTGLSVDLFKKIIVEALSRLPVLPE 187 + +VHP Y F + P +EA VY GL + + +AL E Sbjct: 125 GNMGLEIVHPDYKFFAPRQQ--PDVEANLTPVYPTTEGLRQVTLRNLTDQAL-------E 175 Query: 188 WIEK----DLLQKKSFP---SIAEAFNIIHNPRKAKDFEW----TSPARERLAYDELLAG 236 I+K +LL + ++A+A + IH P D E PA+ RL +ELLA Sbjct: 176 LIDKAAVNELLPSGLYDHQITLAQALHTIHRPPPGIDLELFDEGKHPAQLRLIMEELLAQ 235 Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 +++L +R + +++ +P + K+L +PFSPT +Q K+I D+ + + M+R Sbjct: 236 NLSMLSVRSKGQQDKAMPFPPVNTLKDKLLAQLPFSPTNAQARVTKEIEADLEKPHPMMR 295 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 ++QGDVGSGKTLVA +A A+E G Q +MAP +LA+QH + + I V + Sbjct: 296 LVQGDVGSGKTLVAALAAVRALEHGQQVALMAPTELLAEQHAINFANWFEAMGIQVGWLA 355 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G + R L RIA G+A +++GTHALFQ+ +++ L LVI+DEQHRFGV QRL+L + Sbjct: 356 GKLKGKARETELTRIASGEAQMVVGTHALFQEHVEFKNLGLVIIDEQHRFGVHQRLELRE 415 Query: 417 KATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 K PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + D+++ Sbjct: 416 KGAKQGYYPHQLVMTATPIPRTLAMTAYADLETSIIDELPPGRTPIQTVAIPDTKRDDIV 475 Query: 473 ERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530 ER+K L+EGK+AYW+C I+E + ++ + L I ++HGRM +K Sbjct: 476 ERVKNACLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEK 535 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 ++VM FK LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S Sbjct: 536 QAVMQEFKENKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVAS 595 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 C+LLYH PLSK + RL VL+ + DGF+IA+ DL+ R GE+LG KQ+G+ F IA Sbjct: 596 HCVLLYHSPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLV 655 Query: 651 LHDSLLEIARKDAKHILTQDPD 672 L+ ++ A+HI PD Sbjct: 656 RDQRLIPEVQRIARHIHDSYPD 677 >gi|88800532|ref|ZP_01116095.1| ATP-dependent DNA helicase RecG [Reinekea sp. MED297] gi|88776763|gb|EAR07975.1| ATP-dependent DNA helicase RecG [Reinekea sp. MED297] Length = 693 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 251/661 (37%), Positives = 372/661 (56%), Gaps = 20/661 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L AP+S +G G K + L+++ T DLLF+ P + DR I + Sbjct: 7 LSAPISRLKGAGPKLADKLAQL------ELTSIGDLLFHLPYKYQDRTRITPIGSLRLGM 60 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 V I G I + + +RR + DG+G +T+ F+ T+ ++V G I G+ Sbjct: 61 AVVIEGDI-RGTQVAFGRRRSLICRIQDGSGLLTIRLFH-FTKAQQHVLKNGAAIRCYGE 118 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-- 184 ++ + M+HP Y + + +Y G+ + +I +AL L Sbjct: 119 VRMGPTGLEMIHPEYQVREQGEFEALDQRLTPLYPTTEGIHQIRLRNLIEQALDVLNAQG 178 Query: 185 -LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIA 239 LPEW+ D L PS+ +A +H P D + PA++RLA++ELLA ++ Sbjct: 179 GLPEWLPPDWLTPWQLPSLTDALRTLHRPDPNTDTQTLLDGEHPAQQRLAFEELLAHHLS 238 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L +R+ + PI ++ + +PFS T +Q+ +I QD++ MLR++Q Sbjct: 239 LQALRQATQATGAQPIAKSKRLVPALRDQLPFSLTGAQQRVCGEIAQDLAHPFPMLRLVQ 298 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG+GKTLVALIA A+E+G Q +MAP +LA+QH+ ++ + + + + ++ G Sbjct: 299 GDVGAGKTLVALIAALQAIESGLQVALMAPTELLAEQHFLNMQAWCEPLGVSIGLLLGKT 358 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + R + L+ + G+ +++GTHALFQ + Y+ L LVI+DEQHRFGVQQRL L +KA Sbjct: 359 SRKDRNQLLDGLERGEVQLLVGTHALFQKGVDYHNLGLVIIDEQHRFGVQQRLALKEKAN 418 Query: 420 --APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 PH L MTATPIPRTL +T+ D+DIS I E P GR P+ T +I +R + VI R+ Sbjct: 419 NGTPHQLTMTATPIPRTLAMTAFADMDISIIDELPPGRTPVTTTVISQDRREAVIRRVNA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 +G++ YW+C IEE +E + N L E I ++HG++ DK +M + Sbjct: 479 ACDDGRQIYWVCTLIEESEELQAEAAEATANRLAEALPGRQIGLLHGKLKAADKSRLMAA 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK G +L+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+L++ Sbjct: 539 FKAGELDILVATTVIEVGVDVPNASVMIIENPERLGLAQLHQLRGRVGRGTTESYCLLMF 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PLS+ RL V++ T DGF+IAEEDLK R GE+LG +Q+G F +A E LL Sbjct: 599 GQPLSEQGKQRLEVMRQTSDGFVIAEEDLKLRGPGEVLGTRQTGAVGFRVADMERDAHLL 658 Query: 657 E 657 E Sbjct: 659 E 659 >gi|149908557|ref|ZP_01897219.1| RecG-like helicase [Moritella sp. PE36] gi|149808391|gb|EDM68328.1| RecG-like helicase [Moritella sp. PE36] Length = 690 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 267/675 (39%), Positives = 383/675 (56%), Gaps = 24/675 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P+ +GVG K + L+K+ N DLLF+ PS + DR I ++ T Sbjct: 7 PVIELKGVGAKMADKLAKL------NLMTVQDLLFHLPSRYQDRTTIYPIQDLLPGLHGT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G I KR+ +NDGTG ITLLFF+ KN F G+ IT G+ ++ Sbjct: 61 IEGEIVS-CDVTFGKRKIMSCKVNDGTGIITLLFFHFNAGQ-KNSFSVGKTITAFGEFRR 118 Query: 132 LKNRIIMVHPHY-IFH-NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187 + +VHP Y + H S +++ + +Y GL + + +AL L L E Sbjct: 119 GRFGYEIVHPEYKLAHATSSEMSAETLTPIYPSTEGLKQLTLRNLTDQALQHLSQTTLQE 178 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLM 243 + K L + + A ++H P E PA++RL +ELLA I++L + Sbjct: 179 LLPKGLYTGQI--ELNHAIQLLHRPTPDVSLELLEQGQHPAQQRLIIEELLAQNISMLQL 236 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 RK+ ++ I + + K L +PF+PT +Q+ + +I QD+ + M+R++QGDVG Sbjct: 237 RKKMQQHPAIKLPAHKTLTDKFLAQLPFTPTNAQQRVVGEIQQDLQKGYPMMRLIQGDVG 296 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKTLVA +A A+ G Q +MAP ILA+QH K + I V ++G Sbjct: 297 SGKTLVAALAALQAIGNGYQVALMAPTEILAEQHALNFKGWFNKLGIKVGWLSGKQKGKA 356 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420 R L IA G+ +I+GTHA+FQ ++++ L LVI+DEQHRFGV+QRL L +K Sbjct: 357 REAELASIASGETQMIVGTHAIFQAAVKFLNLTLVIIDEQHRFGVEQRLALREKGAVNGL 416 Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-V 478 PH L MTATPIPRTL +T+ D++ S I E P GR PI TV++P + ++IER+++ V Sbjct: 417 YPHQLFMTATPIPRTLAMTAYADLNTSVIDELPPGRTPITTVVMPDTKRSKIIERVELAV 476 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 +EG++ YW+C IEE ++ + N L + I ++HGRM I+K+ VMD+F Sbjct: 477 KNEGRQVYWVCTLIEESDVLEAQAAEDTANDLQKQLPDLRIGLVHGRMKSIEKQYVMDAF 536 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 K LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG+ S C+LLYH Sbjct: 537 KTKQLDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGKVASHCVLLYH 596 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PLS RLSVL+ T DGF IA+ DL+ R GE+LG KQ+G+ +A L+ Sbjct: 597 APLSDTGSKRLSVLRETTDGFKIAQRDLEIRGPGEMLGSKQTGIADLKVADLVRDQHLIP 656 Query: 658 IARKDAKHILTQDPD 672 + + A+H+L Q PD Sbjct: 657 LVQNIARHLLQQHPD 671 >gi|86146551|ref|ZP_01064873.1| ATP-dependent DNA helicase RecG [Vibrio sp. MED222] gi|85835608|gb|EAQ53744.1| ATP-dependent DNA helicase RecG [Vibrio sp. MED222] Length = 692 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 269/682 (39%), Positives = 389/682 (57%), Gaps = 38/682 (5%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG K + L K+ N DLLF+ P + DR I ++ Sbjct: 9 PLNSLSGVGAKVAEKLEKV-GLNNVQ-----DLLFHLPLRYEDRTRIYPIVKLHAGLWAA 62 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + H KR+ + ++DG G ITL FF T +KN F EG+++ G+IK+ Sbjct: 63 VQGKV-MHVDTIFGKRKMLAVKISDGNGTITLRFF-NFTAGMKNNFAEGKQVHAYGEIKR 120 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA----VYSLPTGLSVDLFKKIIVEALSRLPVLPE 187 + +VHP Y F + P +EA VY GL + + +AL E Sbjct: 121 GNMGLEIVHPDYKFFAPRQQ--PDVEANLTPVYPTTEGLRQVTLRNLTDQAL-------E 171 Query: 188 WIEK----DLLQKKSFP---SIAEAFNIIHNPRKAKDFEW----TSPARERLAYDELLAG 236 I+K +LL + ++A+A + IH P D E PA+ RL +ELLA Sbjct: 172 LIDKAAVNELLPSGLYDHQITLAQALHTIHRPPPGIDLELFDEGKHPAQLRLIMEELLAQ 231 Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 +++L +R + +++ +P + K+L +PFSPT +Q K+I D+ + + M+R Sbjct: 232 NLSMLSVRSKGQQDKAMPFPPVNTLKDKLLAQLPFSPTNAQARVTKEIEADLEKPHPMMR 291 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 ++QGDVGSGKTLVA +A A+E G Q +MAP +LA+QH + + I V + Sbjct: 292 LVQGDVGSGKTLVAALAAVRALEHGQQVALMAPTELLAEQHAINFANWFEAMGIQVGWLA 351 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G + R L RIA G+A +++GTHALFQ+ +++ L LVI+DEQHRFGV QRL+L + Sbjct: 352 GKLKGKARETELTRIASGEAQMVVGTHALFQEHVEFNNLGLVIIDEQHRFGVHQRLELRE 411 Query: 417 KATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 K PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + D+++ Sbjct: 412 KGAKQGYYPHQLVMTATPIPRTLAMTAYADLETSIIDELPPGRTPIQTVAIPDTKRDDIV 471 Query: 473 ERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530 ER+K L+EGK+AYW+C I+E + ++ + L I ++HGRM +K Sbjct: 472 ERVKNACLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEK 531 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 ++VM FK LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S Sbjct: 532 QAVMQEFKENKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVAS 591 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 C+LLYH PLSK + RL VL+ + DGF+IA+ DL+ R GE+LG KQ+G+ F IA Sbjct: 592 HCVLLYHSPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLV 651 Query: 651 LHDSLLEIARKDAKHILTQDPD 672 L+ ++ A+HI PD Sbjct: 652 RDQRLIPEVQRIARHIHDSYPD 673 >gi|304399041|ref|ZP_07380910.1| ATP-dependent DNA helicase RecG [Pantoea sp. aB] gi|304353501|gb|EFM17879.1| ATP-dependent DNA helicase RecG [Pantoea sp. aB] Length = 692 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 254/679 (37%), Positives = 385/679 (56%), Gaps = 25/679 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLST GVG + L+KI + DLL + P + DR I+++ T Sbjct: 10 PLSTLTGVGASQAAKLAKI------DLHTVQDLLLHLPLRYEDRTQLYAINDLLPGIWAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + H+ +RR ++DG+G +T+ FF M KN GR++T G+IK+ Sbjct: 64 VEGEVL-HTDITFGRRRMMVCQISDGSGVLTMRFFNFNAGM-KNNLSPGRRVTAYGEIKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLPVLP-- 186 + ++HP Y Q N L E VY G+ + + +AL+ L P Sbjct: 122 GQRGAEIIHPEYRIQGEQS-NVTLEETLTPVYPTTEGIRQATLRNLTDQALTLLESCPIA 180 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNP----RKAKDFEWTSPARERLAYDELLAGQIALLL 242 E + K+L S+ +A +H P R ++ PA+ RL +ELLA +++L Sbjct: 181 ELLPKEL--SGGLISLPDALRTLHRPPPDLRLSELESGRHPAQRRLILEELLAHNLSMLA 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R ++ +P+ ++ ++L +PFSPT +Q+ + +I +D++ M+R++QGDV Sbjct: 239 VRAGAQRYYALPMPPRHNLSDQLLAALPFSPTNAQKRVVAEIEKDLANDFPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA ++ + G Q +MAP +LA+QH +++ I V + G Sbjct: 299 GSGKTLVAALSALNVIAHGKQVALMAPTELLAEQHASNFRQWFAPLGIEVGWLAGKQKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R+ E IA GQ +++GTHALFQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 359 ARQAQQEAIASGQVAMVVGTHALFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGEEQG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R +E++ R++ Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRREEIVARVEHA 478 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 EG++AYW+C +EE + ++ + SL +I ++HGRM +K++VM +F Sbjct: 479 CREGRQAYWVCTLVEESELLEAQAAEASWESLKTALPDLNIGLVHGRMKPAEKQAVMQAF 538 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 K +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLY Sbjct: 539 KANELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 598 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PLSK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G +F +A +++ Sbjct: 599 APLSKTAQKRLQVLRDSNDGFVIAQFDLEIRGPGELLGTRQTGNAEFKVADLLRDAAMVP 658 Query: 658 IARKDAKHILTQDPDLTSV 676 ++ A+HI P+ S Sbjct: 659 EVQRVARHIHQHYPEQASA 677 >gi|153833907|ref|ZP_01986574.1| ATP-dependent DNA helicase RecG [Vibrio harveyi HY01] gi|148869745|gb|EDL68722.1| ATP-dependent DNA helicase RecG [Vibrio harveyi HY01] Length = 693 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 257/652 (39%), Positives = 388/652 (59%), Gaps = 28/652 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG K + L+K+ DLLF+ P + DR I+++ Sbjct: 10 PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63 Query: 72 ITGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 + G + + ++F KR+ + ++DG G ITL FF T +KN F G+ + G+IK Sbjct: 64 VQGKVMAVDTTFG--KRKMLTVKISDGNGTITLRFF-NFTAAMKNNFSNGKLVHAYGEIK 120 Query: 131 KLKNRIIMVHPHYIFHNSQ---DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVL 185 + + +VHP Y F+ S+ DV L VY GL + + +ALS L + Sbjct: 121 RGGMGLEIVHPDYKFYVSEQKPDVEQSLT-PVYPTTDGLRQITLRNLTEQALSLLDKAAV 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALL 241 E + L + ++++A + IH P + E PA+ RL +ELLA +++L Sbjct: 180 QELLPSGLYNHQI--TMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R + ++++ +P+ + +++L +PFSPT +Q +K+I D+ + + M+R++QGD Sbjct: 238 AVRSKGQQDVALPLASCDSLKKQLLAQLPFSPTNAQARVVKEIEADLEKTHPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+E G Q +MAP +LA+QH + + I V + G + Sbjct: 298 VGSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFKKMGIQVGWLAGKLKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 + L RIA G+A +++GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +K Sbjct: 358 KAKEAELARIASGEAQMVVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + D++IER++ Sbjct: 418 GAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIIERVRN 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 L+EGK+AYW+C I+E + ++ + L I ++HGRM +K++VM Sbjct: 478 ACLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQ 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK+ LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 DFKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 YH PLSK + RL VL+ + DGF+IA++DL+ R GE+LG KQ+G+ F IA Sbjct: 598 YHSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIA 649 >gi|325275147|ref|ZP_08141120.1| ATP-dependent DNA helicase RecG [Pseudomonas sp. TJI-51] gi|324099719|gb|EGB97592.1| ATP-dependent DNA helicase RecG [Pseudomonas sp. TJI-51] Length = 692 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 254/681 (37%), Positives = 391/681 (57%), Gaps = 29/681 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +GVG+ + L+K+ G N D+LF+ P + DR I ++ + Sbjct: 8 PVTVLKGVGEAMAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRVVPIGQLRPGQDAV 61 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G +S + + KRR + L DG+G ++L FY + K G + G+ + Sbjct: 62 IEGVVSG-ADVTMGKRRSLVVRLGDGSGVLSL-RFYHFSNAQKEGLKRGTHLRCYGEARP 119 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLP--VLP 186 + + + HP Y N + P+ + +Y GL+ +++ ++LS L LP Sbjct: 120 GASGLEIYHPEYRALNGDEPPPPVDQTLTPIYPSTEGLTQQRLRQLCQQSLSLLGPRSLP 179 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIA 239 +W+ +L + + +A +HNP D E W A+ RLA++ELL Q++ Sbjct: 180 DWLPDELARDYQLAPLDDAIRYLHNPPADADVEELALGHHW---AQHRLAFEELLTHQLS 236 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 +R+ + + ++ + L N+ F PT +Q+ +I D+SQ M+R++Q Sbjct: 237 QQRLRESLRSLRAPVLPKATRLPAQYLANLGFQPTGAQQRVANEIAYDLSQHEPMMRLVQ 296 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG+GKT+VA +A A+EAG Q +MAP ILA+QHY K++ + + V + G + Sbjct: 297 GDVGAGKTVVAALAALQALEAGYQVALMAPTEILAEQHYITFKRWLEPLGLEVAWLAGKL 356 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R +LE+IA+G A +++GTHALFQD +++ L L I+DEQHRFGVQQRL L +K Sbjct: 357 KGKARAASLEQIANG-APMVVGTHALFQDEVKFKHLALAIIDEQHRFGVQQRLALRKKGV 415 Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 A PH L+MTATPIPRTL +++ D+D S + E P GR P+ TV++ +R EV+ER+ Sbjct: 416 AGELCPHQLIMTATPIPRTLAMSAYADLDTSVLDELPPGRTPVNTVLVADSRRFEVVERV 475 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 + +EG++AYW+C IEE +E ++ + L + +IHGRM +K +M Sbjct: 476 RAACAEGRQAYWVCTLIEESEELTCQAAESTYEELGSALGELRVGLIHGRMKPAEKAEIM 535 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 FK G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG +S C+L Sbjct: 536 AEFKAGNLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVL 595 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 LYHPPLS+ RL +++ T DGF+IAE+DL R GE+LG +Q+G+ +F +A Sbjct: 596 LYHPPLSQIGRERLGIMRETNDGFIIAEKDLALRGPGEMLGTRQTGLLQFKVADLMRDAD 655 Query: 655 LLEIARKDAKHILTQDPDLTS 675 LL R A+ ++ + P+ S Sbjct: 656 LLPAVRDAAQALIARWPEHVS 676 >gi|269965887|ref|ZP_06179980.1| ATP-dependent DNA helicase RecG [Vibrio alginolyticus 40B] gi|269829440|gb|EEZ83681.1| ATP-dependent DNA helicase RecG [Vibrio alginolyticus 40B] Length = 693 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 259/671 (38%), Positives = 395/671 (58%), Gaps = 28/671 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG K + L+K+ DLLF+ P + DR I+++ Sbjct: 10 PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + KR+ + ++DG G ITL FF T +KN F +G+ + G+IK+ Sbjct: 64 VQGKVMAVDTI-FGKRKMLTVKISDGNGTITLRFF-NFTAAMKNNFTQGKLVHAYGEIKR 121 Query: 132 LKNRIIMVHPHYIFHNSQ---DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188 + +VHP Y F+ S+ DV L VY GL + + +AL+ +L + Sbjct: 122 GGMGLEIVHPDYKFYVSEQKPDVEQSLT-PVYPTTDGLRQITLRNLTEQALA---LLDKT 177 Query: 189 IEKDLLQKKSFP---SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALL 241 ++LL + ++++A + IH P + E PA+ RL +ELLA +++L Sbjct: 178 AVQELLPAGLYDHQITMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R + +K+ +P+ K+ ++L +PFSPT +Q +++I D+ + + M+R++QGD Sbjct: 238 AVRSKGQKDSALPLGPCNKLKTQLLAQLPFSPTNAQTRVVQEIEADLEKPHPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+E G Q +MAP +LA+QH + + I V + G + Sbjct: 298 VGSGKTLVAALAAVRAIEHGHQVALMAPTELLAEQHAINFANWFETMGIQVGWLAGKLKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 + L RIA G+A +++GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +K Sbjct: 358 KAKEAELARIASGEAKMVVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + D+++ER++ Sbjct: 418 GAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRN 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 L+EGK+AYW+C I+E + ++ + L I ++HGRM +K++VM Sbjct: 478 ACLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQ 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK+ LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 DFKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 YH PLSK + RL VL+ + DGF+IA++DL+ R GE+LG KQ+G+ F IA L Sbjct: 598 YHSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGIADFKIADLVRDQRL 657 Query: 656 LEIARKDAKHI 666 + ++ A+HI Sbjct: 658 IPEVQRIARHI 668 >gi|212711591|ref|ZP_03319719.1| hypothetical protein PROVALCAL_02666 [Providencia alcalifaciens DSM 30120] gi|212685693|gb|EEB45221.1| hypothetical protein PROVALCAL_02666 [Providencia alcalifaciens DSM 30120] Length = 693 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 253/679 (37%), Positives = 389/679 (57%), Gaps = 34/679 (5%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L++ G+G S + KI N + DLL + P + D I ++ TI Sbjct: 11 LTSLHGIGASQSEKMRKI----GLNTVQ--DLLLHFPLRYEDHTRLYHIKDLMPGTTATI 64 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 TG + Q + ++R L++DGTG +TL FF M KN EGR++T G++++ Sbjct: 65 TGEVLQ-TKVVFGRKRMMTCLISDGTGNLTLRFFNFSAAM-KNSLAEGRQVTAYGEVRRG 122 Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIE---AVYSLPTGLSVDLFKKIIVEALSRL------P 183 ++HP Y + N PL E VY G+ +K++ +A++ L Sbjct: 123 NTGPEIIHPEYKVSQEAE-NVPLQENLTPVYPTTEGVRQATLRKVMDQAIAMLDSSNIQE 181 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIA 239 +LPE + L+ S+ +A ++HNP + PA++RL +ELLA ++ Sbjct: 182 LLPEEFSRSLI------SLPDAIRLLHNPPPDVSLDELEKGHHPAQKRLILEELLAHHLS 235 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 +L +R ++ P+ GK+ +L N+PFSPT +Q+ + +I D+ + M+R++Q Sbjct: 236 MLAIRAGNERLYAEPLISTGKLKAPLLANLPFSPTNAQKRVVAEIEADLHKNAPMMRLIQ 295 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKTLVA +A A+E G Q +MAP ILA+QH K++ + I V + G Sbjct: 296 GDVGSGKTLVAALAAICAIENGKQVALMAPTEILAEQHASTFKQWFEPLGIKVGWLAGKQ 355 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R++ + IA+G+ ++IGTHA+FQ+ + ++ L LVI+DEQHRFGV QRL L +K Sbjct: 356 KGKARQQQQDAIANGEVSMVIGTHAIFQEHVSFHSLGLVIIDEQHRFGVHQRLALREKGE 415 Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV I +R +++ER+ Sbjct: 416 QQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIADSRRSDIVERV 475 Query: 476 K-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533 + L EG++AYW+C I++ + ++ L + ++HGRM +K+S+ Sbjct: 476 RQACLEEGRQAYWVCTLIDDSEVLEAQAAQATSEELALALPELKVGLVHGRMKPTEKQSI 535 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M +FKN +LL+ATTVIEVG+DV +AS++II+N E GLAQLHQLRGRVGRG S C+ Sbjct: 536 MAAFKNNEIQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGSVASHCV 595 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 LLY PL+ + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G F +A Sbjct: 596 LLYKTPLTHTAKQRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNADFKVADLLRDQ 655 Query: 654 SLLEIARKDAKHILTQDPD 672 +L ++ A+HI P+ Sbjct: 656 YMLPEVQRLARHIQQNYPE 674 >gi|322515551|ref|ZP_08068533.1| DNA helicase RecG [Actinobacillus ureae ATCC 25976] gi|322118394|gb|EFX90657.1| DNA helicase RecG [Actinobacillus ureae ATCC 25976] Length = 693 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 269/678 (39%), Positives = 386/678 (56%), Gaps = 26/678 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+ GVG + LS+I N DLLF+ P + DR I ++ E T Sbjct: 10 PLTGLSGVGAAIAEKLSRI-GINNVQ-----DLLFHLPYRYEDRTRITPIIDVRPESFST 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G I Q + Q +R +L+DGT +ITL FF M KN G ++ G+IK+ Sbjct: 64 IEG-IVQLTEVQFGRRPILSTVLSDGTSKITLKFFNFNAGM-KNSLTAGTRVKAFGEIKR 121 Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + + HP Y I N+Q + + +YS GL + +K+ +AL+ +L + Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQNSLRKLTEQALA---LLDKIK 178 Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALLL 242 +LL + P S+ EA ++H P A+ E PA++RL ++ELLA +A+ Sbjct: 179 VGELLPDEYNPHKYSLKEALQLLHRPPPDISAEQLEKGDHPAQKRLIFEELLAHNLAMQQ 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R + I P+ + + + L ++PF PT +Q DI QD+++ + M+R++QGDV Sbjct: 239 VRVGVNQLIATPLRYQTDLKSRFLVSLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A++ G Q +MAP ILA+QH + + I + G + Sbjct: 299 GSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEAGWLAGKVKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R LE I +G+ +IIGTHALFQ+S++++ L LVI+DEQHRFGV QRL L +K Sbjct: 359 ARTVQLEAIKNGEIQMIIGTHALFQESVEFHNLTLVIIDEQHRFGVHQRLTLREKGAKDG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH L+MTATPIPRTL +T D+D S I E P GR PI TV I +R DE++ R+ Sbjct: 419 IYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAA 478 Query: 479 L-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 +E ++AYW+C I+E + ++ L I ++HGRM +K+ +M Sbjct: 479 CKNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQEIMAE 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK LL+ATTVIEVG+DV +AS++IIEN+E GLAQLHQLRGRVGRG S C+LLY Sbjct: 539 FKAANIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PPL K S RL VL++++DGF IAE+DL+ R GEILG KQ+GM +F A ++ Sbjct: 599 KPPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKAANLMRDRKMI 658 Query: 657 EIARKDAKHILTQDPDLT 674 + + AK I+ Q+P L Sbjct: 659 PLVQNYAKQIIRQNPPLA 676 >gi|170719350|ref|YP_001747038.1| ATP-dependent DNA helicase RecG [Pseudomonas putida W619] gi|169757353|gb|ACA70669.1| ATP-dependent DNA helicase RecG [Pseudomonas putida W619] Length = 692 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 256/678 (37%), Positives = 391/678 (57%), Gaps = 25/678 (3%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 ++ +GVG+ + L+K+ G N D+LF+ P + DR I + + I Sbjct: 9 VTALKGVGEAMAQKLAKV---GLEN---LQDVLFHLPLRYQDRTRVVPIGALRPGQDAVI 62 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G +S + + KRR + L DG+G ++L FY + K G + G+ + Sbjct: 63 EGVVS-GADVTMGKRRSLVVRLGDGSGVLSL-RFYHFSNAQKEGLKRGTHLRCYGEARPG 120 Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187 + + + HP Y N + P+ + +Y GL+ + + ++L L LP+ Sbjct: 121 ASGLEIYHPEYRALNGDEPPPPVEQTLTPIYPSTEGLTQQRLRLLCQQSLDMLGPRSLPD 180 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243 W+ +L + + +A +HNP D E A+ RLA++ELL Q++ + Sbjct: 181 WLPDELARDYHLAPLDDAIRYLHNPPADADLDELAEGQHWAQHRLAFEELLTHQLSQQRL 240 Query: 244 RKQFKKEIGIPINVEGKIAQ-KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 R+ + + P+ + K Q + L N+ F PT +Q+ +I D+SQ M+R++QGDV Sbjct: 241 RESLRS-LRAPVLPKAKRLQLQYLANLGFKPTGAQQRVADEIAYDLSQAEPMMRLVQGDV 299 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 G+GKT+VA +A A+EAG Q +MAP ILA+QHY K++ + + V + G + Sbjct: 300 GAGKTVVAALAALQALEAGYQVALMAPTEILAEQHYITFKRWLEPLGLEVAWLAGKLKGK 359 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R ALE+IA+G A +++GTHALFQ+ +Q+ L L I+DEQHRFGVQQRL L +K A Sbjct: 360 ARASALEQIANG-APMVVGTHALFQEEVQFKHLALAIIDEQHRFGVQQRLALRKKGVAGE 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH L+MTATPIPRTL +++ D+D S + E P GR P+ TV++ +R EV+ER++ Sbjct: 419 LCPHQLIMTATPIPRTLAMSAYADLDTSVLDELPPGRTPVNTVLVADSRRFEVVERVRAA 478 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 +EG++AYW+C IEE +E ++ + L + +IHGRM +K +VM F Sbjct: 479 CAEGRQAYWVCTLIEESEELTCQAAESTYEELGSALGELRVGLIHGRMKPAEKAAVMAEF 538 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 K G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG +S C+LLYH Sbjct: 539 KQGDLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYH 598 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PPLS+ RL +++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A LL Sbjct: 599 PPLSQIGRERLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLP 658 Query: 658 IARKDAKHILTQDPDLTS 675 R A+ ++ + P+ S Sbjct: 659 AVRDAAQALIARWPEHVS 676 >gi|331018574|gb|EGH98630.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 691 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 256/683 (37%), Positives = 397/683 (58%), Gaps = 36/683 (5%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 ++ +GVG+ + L+K+ G N D+LF+ P + DR I +S + I Sbjct: 9 VTALKGVGEAMAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRIVPIGALSPGQDAVI 62 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G +S + + KRR + L DGTG ++L FY + K G + G+ + Sbjct: 63 EGVVS-GADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120 Query: 133 KNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPEW 188 + + + HP Y I + + +Y GL+ +++ ++L+ L LP+W Sbjct: 121 ASGLEIYHPEYRAITGDEPPPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPDW 180 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIALL 241 + ++L + + +A +H+P D + W A+ RLA++ELL Q++ Sbjct: 181 LPEELARDYQLAPLDDAIRYLHHPPADADVDELALGHHW---AQHRLAFEELLTHQLSQQ 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R+ + + + V K+ ++ L N+ F+PT +Q+ K++ D+SQ MLR++QGD Sbjct: 238 RLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VA +A A+EAG Q +MAP ILA+QHY +++ + + V + G + Sbjct: 298 VGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVDVAWLAGKLKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R +LE+IA G +++GTHALFQD +Q+ L LVI+DEQHRFGVQQRL L +K Sbjct: 358 KARVTSLEQIATGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVGG 416 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 PH L+MTATPIPRTL +++ D+D S + E P GR P+ TV++ +R EV+ER++ Sbjct: 417 LMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVRA 476 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-----IAIIHGRMSDIDKES 532 +EG++AYW+C IEE +E ++ + +E TS+ + +IHGRM +K + Sbjct: 477 ACAEGRQAYWVCTLIEESEELTCKAA----ETTYEELTSALGEVRVGLIHGRMKPAEKAA 532 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +M FK G +LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG +S C Sbjct: 533 IMAEFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHC 592 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +LLYHPPLS+ RL +++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A Sbjct: 593 VLLYHPPLSQIGRQRLGIMRETNDGFIIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRD 652 Query: 653 DSLLEIARKDAKHILTQDPDLTS 675 LL R A+ +L + P S Sbjct: 653 ADLLPAVRDAAQALLERWPQHVS 675 >gi|260774741|ref|ZP_05883644.1| ATP-dependent DNA helicase RecG [Vibrio coralliilyticus ATCC BAA-450] gi|260609303|gb|EEX35455.1| ATP-dependent DNA helicase RecG [Vibrio coralliilyticus ATCC BAA-450] Length = 692 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 265/678 (39%), Positives = 397/678 (58%), Gaps = 30/678 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG K + L+K+ N + DLLF+ P + DR I ++ Sbjct: 9 PLTSLTGVGAKVAEKLAKV----GLNSVQ--DLLFHLPLRYEDRTRIYPIVKLHAGLWAA 62 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + KR+ + ++DG G ITL FF T +KN F EG+ + G+IK+ Sbjct: 63 VQGKVMSADTL-FGKRKMLTVKISDGNGTITLRFF-NFTAAMKNNFAEGKTVHAYGEIKR 120 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL-----IEAVYSLPTGLSVDLFKKIIVEALSRL--PV 184 + +VHP Y F+ N P + VY GL + + +AL+ + Sbjct: 121 GSFGLEIVHPDYKFYAP---NQPAEVEQNLTPVYPTTDGLRQITLRNLTDQALALIDKAA 177 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIAL 240 + E + L ++ S+A+A + IH P D E PA+ RL +ELLA +++ Sbjct: 178 VQELLPSGLYNQQV--SLAQALHTIHRPTPDIDLQAFDEGKHPAQIRLIMEELLAQNLSM 235 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L +R + ++++ +P+ ++ Q++L +PFSPTK+Q + +I QD+ + + M+R++QG Sbjct: 236 LSVRSKGQQDVALPLAERNQLKQQLLDQLPFSPTKAQSRVVAEIEQDLEKPHPMMRLVQG 295 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKTLVA +A A+E G Q +MAP +LA+QH ++ + I V + G + Sbjct: 296 DVGSGKTLVAALAALRALEHGYQVALMAPTELLAEQHALNFAQWLEPMGINVGWLAGKLK 355 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 + L +IA G+A +++GTHALFQ+ + ++ L LVI+DEQHRFGV QRL+L +K Sbjct: 356 GKAKEIELAKIASGEAQMVVGTHALFQEHVIFHHLALVIIDEQHRFGVHQRLELREKGEK 415 Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + D+++ER++ Sbjct: 416 QGAFPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVR 475 Query: 477 -VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 L+EGK+AYW+C I+E + ++ + L I ++HGRM +K+SVM Sbjct: 476 NACLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQSVM 535 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 FK+ LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C+L Sbjct: 536 QDFKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVL 595 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 LYH PLSK + RL VL+ + DGF+IA+ DL+ R GE+LG KQ+GM F IA Sbjct: 596 LYHSPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGMADFKIADLIRDQH 655 Query: 655 LLEIARKDAKHILTQDPD 672 L+ ++ A+HI PD Sbjct: 656 LIPEVQRVARHIHDNFPD 673 >gi|269103906|ref|ZP_06156603.1| ATP-dependent DNA helicase RecG [Photobacterium damselae subsp. damselae CIP 102761] gi|268163804|gb|EEZ42300.1| ATP-dependent DNA helicase RecG [Photobacterium damselae subsp. damselae CIP 102761] Length = 693 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 254/674 (37%), Positives = 389/674 (57%), Gaps = 24/674 (3%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 +S GVG K + LSKI N + DLLF+ P + DR + +I + +T+ Sbjct: 11 VSELSGVGAKMAEKLSKI----GLNSVQ--DLLFHLPLRYEDRTRIWPMGQIKPGQHLTV 64 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G + + KR+ + + D TG +TL FF M KN F EGR++ G+IK+ Sbjct: 65 QGEVLT-CNMTFGKRKMLTVKIGDDTGAVTLRFFNFNAAM-KNSFIEGRQVKAYGEIKRG 122 Query: 133 KNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPEW 188 + + + HP Y +F ++ + VY GL + + +AL L + E Sbjct: 123 QYGLEINHPDYRVFSEPTELRVEETLTPVYPTTDGLRQLTLRNLTDQALKLLDKAAVREL 182 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMR 244 + + L ++ ++A+A + +H P + PA++RL +ELLA +++L +R Sbjct: 183 LPEGLYDRQM--TLAQALHTMHRPTPDISLDQLETGKHPAQQRLILEELLAQNLSMLALR 240 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 + ++ P++ + Q++L +PF+PT++Q+ + +I D+S M+R++QGDVGS Sbjct: 241 SKGQQHNSWPLSATDTLKQQLLSALPFTPTRAQQRVVAEIENDLSLTQPMMRLVQGDVGS 300 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKTLVA ++ A+E G Q +MAP +LA+QH + I V + G + R Sbjct: 301 GKTLVAALSALRAIEHGYQVALMAPTELLAEQHAINFANWFNPLDIQVGWLAGKLKGKAR 360 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---- 420 K LE+I G +++GTHALFQ+ +++ L LVI+DEQHRFGV QRL+L +K Sbjct: 361 EKELEKIESGSVKMVVGTHALFQEQVKFANLALVIIDEQHRFGVHQRLELREKGANDGRY 420 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VVL 479 PH L+MTATPIPRTL +T+ D+D S I E P GR PI TV +P +R D++IER++ Sbjct: 421 PHQLVMTATPIPRTLAMTAYADMDTSIIDELPPGRTPITTVAVPDSRRDDIIERIRHACQ 480 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538 +EG++AYW+C I+E + ++ + L E I ++HGRM +K+ +M FK Sbjct: 481 TEGRQAYWVCTLIDESEVLEAQAASDTAADLTEKLPELKIGLVHGRMKAQEKQHIMAQFK 540 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G LL+ATTVIEVG+DV ++S+++IEN E GLAQLHQLRGRVGRG S C+LLY Sbjct: 541 AGELDLLVATTVIEVGVDVPNSSLMVIENPERLGLAQLHQLRGRVGRGNIASHCVLLYKS 600 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PLSK + RL VL+ + DGF+IA+ DL+ R GE+LG KQ+G+ +F +A ++ Sbjct: 601 PLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGIAEFKVADLVRDQYMIPQ 660 Query: 659 ARKDAKHILTQDPD 672 +K A++I PD Sbjct: 661 IQKLARYIHQNYPD 674 >gi|302133612|ref|ZP_07259602.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 691 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 256/683 (37%), Positives = 397/683 (58%), Gaps = 36/683 (5%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 ++ +GVG+ + L+K+ G N D+LF+ P + DR I +S I Sbjct: 9 VTALKGVGEAMAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRIVPIGALSPGHDAVI 62 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G +S + + KRR + L DGTG ++L FY + K G + G+ + Sbjct: 63 EGVVS-GADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120 Query: 133 KNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPEW 188 + + + HP Y I + + +Y GL+ +++ ++L+ L LP+W Sbjct: 121 ASGLEIYHPEYRAITGDEPPPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPDW 180 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIALL 241 + ++L + + +A +H+P D + W A+ RLA++ELL Q++ Sbjct: 181 LPEELARDYQLAPLDDAIRYLHHPPADADVDELALGHHW---AQHRLAFEELLTHQLSQQ 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R+ + + + V K+ ++ L N+ F+PT +Q+ K++ D+SQ MLR++QGD Sbjct: 238 RLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VA +A A+EAG Q +MAP ILA+QHY +++ + + V ++G + Sbjct: 298 VGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVDVAWLSGKLKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R +LE+IA G +++GTHALFQD +Q+ L LVI+DEQHRFGVQQRL L +K Sbjct: 358 KARVTSLEQIATGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVGG 416 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 PH L+MTATPIPRTL +++ D+D S + E P GR P+ TV++ +R EV+ER++ Sbjct: 417 LMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVRA 476 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-----IAIIHGRMSDIDKES 532 +EG++AYW+C IEE +E ++ + +E TS+ + +IHGRM +K + Sbjct: 477 ACAEGRQAYWVCTLIEESEELTCKAA----ETTYEELTSALGEVRVGLIHGRMKPAEKAA 532 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +M FK G +LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG +S C Sbjct: 533 IMAEFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHC 592 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +LLYHPPLS+ RL +++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A Sbjct: 593 VLLYHPPLSQIGRQRLGIMRETNDGFIIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRD 652 Query: 653 DSLLEIARKDAKHILTQDPDLTS 675 LL R A+ +L + P S Sbjct: 653 ADLLPAVRDAAQALLERWPQHVS 675 >gi|308188675|ref|YP_003932806.1| ATP-dependent DNA helicase [Pantoea vagans C9-1] gi|308059185|gb|ADO11357.1| ATP-dependent DNA helicase [Pantoea vagans C9-1] Length = 692 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 254/679 (37%), Positives = 383/679 (56%), Gaps = 25/679 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLST GVG + L+KI + DLL + P + DR I ++ T Sbjct: 10 PLSTLTGVGASQAAKLAKI------DLHTIQDLLLHLPLRYEDRTQLYAIDDLLPGIWAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + H+ +RR ++DG+G +T+ FF M KN GR++T G+IK+ Sbjct: 64 VEGEVL-HTDITFGRRRMMVCQISDGSGVLTMRFFNFNAGM-KNNLSPGRRVTAYGEIKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLPVLP-- 186 + ++HP Y Q N L E VY G+ + + +AL+ L P Sbjct: 122 GQRGAEIIHPEYRIQGEQS-NVALEETLTPVYPTTEGIRQATLRNLTDQALTLLESCPIA 180 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNP----RKAKDFEWTSPARERLAYDELLAGQIALLL 242 E + ++L S+ +A +H P R ++ PA+ RL +ELLA +++L Sbjct: 181 ELLPQEL--SGGLISLPDALRTLHRPPPDLRLSELESGRHPAQRRLILEELLAHNLSMLA 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R ++ +P+ ++ ++L +PFSPT +Q+ + +I +D++ M+R++QGDV Sbjct: 239 VRAGAQRYYALPMTPRHNLSDQLLAALPFSPTNAQKRVVTEIEKDLANDFPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA ++ + Q +MAP +LA+QH +++ I V + G Sbjct: 299 GSGKTLVAALSALNVIAHDKQVALMAPTELLAEQHASNFRQWFAPLGIEVGWLAGKQKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R+ E IA GQ +++GTHALFQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 359 ARQAQQEAIASGQVAMVVGTHALFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGEEQG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R DE++ R++ Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRRDEIVARVEHA 478 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 EG++AYW+C IEE + ++ + SL +I ++HGRM +K++VM +F Sbjct: 479 CREGRQAYWVCTLIEESELLEAQAAEASWESLKTALPDLNIGLVHGRMKPAEKQAVMQAF 538 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 K +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLY Sbjct: 539 KANELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 598 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PLSK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G +F +A +++ Sbjct: 599 APLSKTTQKRLQVLRDSNDGFVIAQFDLEIRGPGELLGTRQTGNAEFKVADLLRDAAMVP 658 Query: 658 IARKDAKHILTQDPDLTSV 676 ++ A+HI P+ S Sbjct: 659 EVQRVARHIHQHYPEQASA 677 >gi|213970706|ref|ZP_03398831.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tomato T1] gi|301382593|ref|ZP_07231011.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tomato Max13] gi|302059230|ref|ZP_07250771.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tomato K40] gi|213924540|gb|EEB58110.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tomato T1] Length = 691 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 256/683 (37%), Positives = 396/683 (57%), Gaps = 36/683 (5%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 ++ +GVG+ + L+K+ G N D+LF+ P + DR I +S I Sbjct: 9 VTALKGVGEAMAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRIVPIGALSPGHDAVI 62 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G +S + + KRR + L DGTG ++L FY + K G + G+ + Sbjct: 63 EGVVSG-ADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120 Query: 133 KNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPEW 188 + + + HP Y I + + +Y GL+ +++ ++L+ L LP+W Sbjct: 121 ASGLEIYHPEYRAITGDEPPPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPDW 180 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIALL 241 + ++L + + +A +H+P D + W A+ RLA++ELL Q++ Sbjct: 181 LPEELARDYQLAPLDDAIRYLHHPPADADVDELALGHHW---AQHRLAFEELLTHQLSQQ 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R+ + + + V K+ ++ L N+ F+PT +Q+ K++ D+SQ MLR++QGD Sbjct: 238 RLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VA +A A+EAG Q +MAP ILA+QHY +++ + + V + G + Sbjct: 298 VGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVDVAWLAGKLKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R +LE+IA G +++GTHALFQD +Q+ L LVI+DEQHRFGVQQRL L +K Sbjct: 358 KARVTSLEQIATGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVGG 416 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 PH L+MTATPIPRTL +++ D+D S + E P GR P+ TV++ +R EV+ER++ Sbjct: 417 LMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVRA 476 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-----IAIIHGRMSDIDKES 532 +EG++AYW+C IEE +E ++ + +E TS+ + +IHGRM +K + Sbjct: 477 ACAEGRQAYWVCTLIEESEELTCKAA----ETTYEELTSALGEVRVGLIHGRMKPAEKAA 532 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +M FK G +LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG +S C Sbjct: 533 IMAEFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHC 592 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +LLYHPPLS+ RL +++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A Sbjct: 593 VLLYHPPLSQIGRQRLGIMRETNDGFIIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRD 652 Query: 653 DSLLEIARKDAKHILTQDPDLTS 675 LL R A+ +L + P S Sbjct: 653 ADLLPAVRDAAQALLERWPQHVS 675 >gi|254360948|ref|ZP_04977094.1| helicase RecG [Mannheimia haemolytica PHL213] gi|153092427|gb|EDN73490.1| helicase RecG [Mannheimia haemolytica PHL213] Length = 693 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 267/682 (39%), Positives = 390/682 (57%), Gaps = 34/682 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+ GVG S LS+I N DLLF+ P + DR I+++ E T Sbjct: 10 PLTALSGVGAAISEKLSRI-GINNVQ-----DLLFHLPMRYEDRTRITPIADVRPESFAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I GY+ Q + Q KR + L+D T +I L FF M KN G ++ G+IK+ Sbjct: 64 IEGYV-QLTEVQFGKRPILSVTLSDSTSKIMLKFFNFNAGM-KNSLATGVRVKAFGEIKR 121 Query: 132 LKNRIIMVHPHY-IFHNSQDVNFPLIEA-----VYSLPTGLSVDLFKKIIVEALSRLPVL 185 + + HP Y I ++Q PL+ A +YS GL +K+ +AL+ +L Sbjct: 122 GRFMAEIHHPEYQIIRDNQ----PLVLAETLTPIYSTTEGLKQASLRKLTEQALA---LL 174 Query: 186 PEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQI 238 + +LL + P S+ EA ++H P E PA++RL ++ELLA + Sbjct: 175 EKVKVAELLPDEYNPHKYSLKEALQLLHRPPPTISAEVLEKGDHPAQKRLIFEELLAHNL 234 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 A+ +R K++ + + I Q+ L ++PF PT +Q DI QD+++ + M+R++ Sbjct: 235 AMQQLRLGVKQQYAEALTYQTDIKQRFLDSLPFKPTHAQSRVTADIEQDLAKPHPMMRLV 294 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKTLVA +A A++ G Q +MAP ILA+QH + I V + G Sbjct: 295 QGDVGSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLNPFGIEVGWLAGK 354 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + R LE I +G +IIGTHALFQD+++++ L LVI+DEQHRFGV QRL L +K Sbjct: 355 VKGKARTAQLEAIKNGDVQMIIGTHALFQDNVEFHHLALVIIDEQHRFGVHQRLTLREKG 414 Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 PH L+MTATPIPRTL +T D+D S I E P GR PI TV+I +R E+++R Sbjct: 415 AKENNYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVISEDRRAEIVQR 474 Query: 475 L-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532 + +V E ++AYW+C I+E + ++ L I ++HGR+ +K++ Sbjct: 475 VYQVCKQEHRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRLKPQEKQA 534 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +M FK LL+ATTVIEVG+DV +AS++IIEN+E GLAQLHQLRGRVGRG S C Sbjct: 535 IMAEFKAANLDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHC 594 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +L+Y PPL K S RL V+++++DGF IAE+DL+ R GEILG KQ+GM +F +A Sbjct: 595 VLMYKPPLGKISSKRLQVMRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVADLMRD 654 Query: 653 DSLLEIARKDAKHILTQDPDLT 674 ++ + ++ AK I++++ L Sbjct: 655 RKMIPLVQRYAKQIISENQPLA 676 >gi|91224993|ref|ZP_01260252.1| ATP-dependent DNA helicase RecG [Vibrio alginolyticus 12G01] gi|91190239|gb|EAS76509.1| ATP-dependent DNA helicase RecG [Vibrio alginolyticus 12G01] Length = 693 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 258/671 (38%), Positives = 395/671 (58%), Gaps = 28/671 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG K + L+K+ DLLF+ P + DR I+++ Sbjct: 10 PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + KR+ + ++DG G ITL FF T +KN F +G+ + G+IK+ Sbjct: 64 VQGKVMAVDTI-FGKRKMLTVKISDGNGTITLRFF-NFTAAMKNNFTQGKLVHAYGEIKR 121 Query: 132 LKNRIIMVHPHYIFHNSQ---DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188 + +VHP Y F+ S+ DV L VY GL + + +AL+ +L + Sbjct: 122 GGMGLEIVHPDYKFYVSEQKPDVEQSLT-PVYPTTDGLRQITLRNLTEQALA---LLDKT 177 Query: 189 IEKDLLQKKSFP---SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALL 241 ++LL + ++++A + IH P + E PA+ RL +ELLA +++L Sbjct: 178 AVQELLPAGLYDHQITMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R + +K+ +P+ K+ ++L +PFSPT +Q +++I D+ + + M+R++QGD Sbjct: 238 AVRSKGQKDSALPLGPCNKLKTQLLVQLPFSPTNAQTRVVQEIEADLEKPHPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+E G Q +MAP +LA+QH + + I V + G + Sbjct: 298 VGSGKTLVAALAAVRAIEHGHQVALMAPTELLAEQHAINFANWFETMGIQVGWLAGKLKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 + L RIA G+A +++GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +K Sbjct: 358 KAKEAELARIASGEAQMVVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + ++++ER++ Sbjct: 418 GAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRNDIVERVRN 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 L+EGK+AYW+C I+E + ++ + L I ++HGRM +K++VM Sbjct: 478 ACLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQ 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK+ LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 DFKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 YH PLSK + RL VL+ + DGF+IA++DL+ R GE+LG KQ+G+ F IA L Sbjct: 598 YHSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIADLVRDQRL 657 Query: 656 LEIARKDAKHI 666 + ++ A+HI Sbjct: 658 IPEVQRIARHI 668 >gi|325577828|ref|ZP_08148103.1| DNA helicase RecG [Haemophilus parainfluenzae ATCC 33392] gi|325160573|gb|EGC72699.1| DNA helicase RecG [Haemophilus parainfluenzae ATCC 33392] Length = 693 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 260/678 (38%), Positives = 396/678 (58%), Gaps = 26/678 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+T GVG S LS+I G N DLLF+ P + DR I+++ E+ T Sbjct: 10 PLTTLSGVGAAISDKLSRI---GIHN---LQDLLFHLPIRYEDRTRITPIADLRPEQYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G + Q +R + L+DGT +I L FF M KN F G ++ G+IK+ Sbjct: 64 IEGVV-QTCEVAFGRRPILTVSLSDGTSKIMLRFFNFNAGM-KNSFQIGTRVKAFGEIKR 121 Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + + HP Y I N+ V + +YS GL + +K+ +AL+ +L + Sbjct: 122 GRFMAEIHHPEYQIIRDNAPLVLEETLTPIYSTTEGLKQNSLRKLTDQALA---LLDKIQ 178 Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLL 242 ++L + P S+ +A +H P + PA++RL ++ELLA +A+ Sbjct: 179 LTEILPNEFNPHPFSLKDAIRFLHRPPPDISLDILEKGQHPAQQRLIFEELLAHNLAMQK 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R ++ + +P++ + + Q+ L ++PF PT +Q + DI QD+++ M+R++QGDV Sbjct: 239 VRLGTQQFLALPLHYQTDLKQRFLASLPFQPTNAQNRVVADIEQDLAKDYPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A++ G Q +MAP ILA+QH +++ + I V + G + Sbjct: 299 GSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFRRWLEPFGIDVGWLAGKVKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R+ LE+I G +++GTHALFQ+ +++ L LVI+DEQHRFGV QRL L +K Sbjct: 359 ARQAELEKIKSGAVQMVVGTHALFQEEVEFADLALVIIDEQHRFGVHQRLMLREKGEKAG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T D+D S I E P GR PI TV+I R DE++ R+K Sbjct: 419 FYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVISEERRDEIVARVKNA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 ++E ++AYW+C I+E + ++ + L + I ++HGRM +K+ +M + Sbjct: 479 CINEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLKIGLVHGRMKPQEKQDIMAA 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FKN LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S C+L+Y Sbjct: 539 FKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PPL K S RL VL++++DGF+I+E+DL+ R GE+LG KQ+G+ +F +A ++ Sbjct: 599 KPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAEFKVANLMRDRKMI 658 Query: 657 EIARKDAKHILTQDPDLT 674 + AK ++ + PD+ Sbjct: 659 PTVQHYAKALIVKYPDVA 676 >gi|330986881|gb|EGH84984.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. lachrymans str. M301315] Length = 691 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 255/680 (37%), Positives = 393/680 (57%), Gaps = 30/680 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 ++ +GVG+ + L+K+ ET D+LF+ P + DR I + + I Sbjct: 9 VTALKGVGEAMAEKLAKV-----GLET-LQDVLFHLPLRYQDRTRVVPIGALRPGQDAVI 62 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G +S + + KRR + L DGTG ++L FY + K G + G+ + Sbjct: 63 EGVVS-GADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120 Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187 + + + HP Y + D P+ + +Y GL+ +++ ++L+ L LP+ Sbjct: 121 ASGLEIYHPEY-RAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIAL 240 W+ +L + + +A +H+P D E W A+ RLA++ELL Q++ Sbjct: 180 WLPDELARDYQLAPLDDAIRYLHHPPADADVEELALGHHW---AQHRLAFEELLTHQLSQ 236 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 +R+ + + + V K+ ++ L N+ F+PT +Q+ K++ D+SQ MLR++QG Sbjct: 237 QRLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQG 296 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA +A A+EAG Q +MAP ILA+QHY +++ + + V + G + Sbjct: 297 DVGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLK 356 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 R +LE+IA G +++GTHALFQD +Q+ L LVI+DEQHRFGVQQRL L +K Sbjct: 357 GKARATSLEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVG 415 Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PH L+MTATPIPRTL +++ D+D S + E P GR P+ TV++ +R EV+ER++ Sbjct: 416 GLMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVR 475 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +EG++AYW+C IEE +E ++ + L + +IHGRM +K ++M Sbjct: 476 AACAEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGEVRVGLIHGRMKPAEKAAIMA 535 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK G +LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG +S C+LL Sbjct: 536 EFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLL 595 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 YHPPLS+ RL +++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A L Sbjct: 596 YHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADL 655 Query: 656 LEIARKDAKHILTQDPDLTS 675 L R A+ +L + P S Sbjct: 656 LPAVRDAAQALLERWPQHVS 675 >gi|28867305|ref|NP_789924.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tomato str. DC3000] gi|28850539|gb|AAO53619.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tomato str. DC3000] Length = 691 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 256/683 (37%), Positives = 397/683 (58%), Gaps = 36/683 (5%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 ++ +GVG+ + L+K+ G N D+LF+ P + DR I +S + I Sbjct: 9 VTALKGVGEAMAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRIVPIGALSPGQDAVI 62 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G +S + + KRR + L DGTG ++L FY + K G + G+ + Sbjct: 63 EGVVS-GADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120 Query: 133 KNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPEW 188 + + + HP Y I + + +Y GL+ +++ ++L+ L LP+W Sbjct: 121 ASGLEIYHPEYRAITGDEPPPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPDW 180 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIALL 241 + ++L + + +A +H+P D + W A+ RLA++ELL Q++ Sbjct: 181 LPEELARDYQLAPLDDAIRYLHHPPADADVDELALGHHW---AQHRLAFEELLTHQLSQQ 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R+ + + + V K+ ++ L N+ F+PT +Q+ K++ D+SQ MLR++QGD Sbjct: 238 RLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VA +A A+EAG Q +MAP ILA+QHY +++ + + V + G + Sbjct: 298 VGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVDVAWLAGKLKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA--- 418 R +LE+IA G +++GTHALFQD +Q+ L LVI+DEQHRFGVQQRL L +K Sbjct: 358 KARVTSLEQIATGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGIGG 416 Query: 419 -TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 PH L+MTATPIPRTL +++ D+D S + E P GR P+ TV++ +R EV+ER++ Sbjct: 417 LMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVRA 476 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-----IAIIHGRMSDIDKES 532 +EG++AYW+C IEE +E ++ + +E TS+ + +IHGRM +K + Sbjct: 477 ACAEGRQAYWVCTLIEESEELTCKAA----ETTYEELTSALGEVRVGLIHGRMKHAEKAA 532 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +M FK G +LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG +S C Sbjct: 533 IMAEFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHC 592 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +LLYHPPLS+ RL +++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A Sbjct: 593 VLLYHPPLSQIGRQRLGIMRETNDGFIIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRD 652 Query: 653 DSLLEIARKDAKHILTQDPDLTS 675 LL R A+ +L + P S Sbjct: 653 ADLLPAVRDAAQALLERWPQHVS 675 >gi|84386372|ref|ZP_00989400.1| ATP-dependent DNA helicase RecG [Vibrio splendidus 12B01] gi|84378796|gb|EAP95651.1| ATP-dependent DNA helicase RecG [Vibrio splendidus 12B01] Length = 692 Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust. Identities = 269/682 (39%), Positives = 389/682 (57%), Gaps = 38/682 (5%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG K + L K+ N DLLF+ P + DR I ++ Sbjct: 9 PLNSLSGVGAKVAEKLEKV-GLNNVQ-----DLLFHLPLRYEDRTRIYPIVKLHAGLWAA 62 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + H KR+ + ++DG G ITL FF T +KN F EG+++ G+IK+ Sbjct: 63 VQGKV-MHVDTIFGKRKMLAVKISDGNGTITLRFF-NFTAGMKNNFAEGKQVHAYGEIKR 120 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA----VYSLPTGLSVDLFKKIIVEALSRLPVLPE 187 + +VHP Y F + P +EA VY GL + + +AL E Sbjct: 121 GNMGLEIVHPDYKFFAPR--QQPDVEANLTPVYPTTEGLRQVTLRNLTDQAL-------E 171 Query: 188 WIEK----DLLQKKSFP---SIAEAFNIIHNPRKAKDFEW----TSPARERLAYDELLAG 236 I+K +LL + ++A+A + IH P D E PA+ RL +ELLA Sbjct: 172 LIDKAAVNELLPSGLYDHQITLAQALHTIHRPPPGIDLELFDEGKHPAQLRLIMEELLAQ 231 Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 +++L +R + +++ +P + K+L +PFSPT +Q K+I D+ + + M+R Sbjct: 232 NLSMLSVRSKGQQDKAMPFPPVNTLKDKLLAQLPFSPTNAQVRVTKEIEADLEKPHPMMR 291 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 ++QGDVGSGKTLVA +A A+E G Q +MAP +LA+QH + + I V + Sbjct: 292 LVQGDVGSGKTLVAALAAVRALEHGQQVALMAPTELLAEQHAINFANWFEAMGIQVGWLA 351 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G + R L RIA G+A +++GTHALFQ+ +++ L LVI+DEQHRFGV QRL+L + Sbjct: 352 GKLKGKARETELTRIASGEAQMVVGTHALFQEHVEFKNLGLVIIDEQHRFGVHQRLELRE 411 Query: 417 KATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 K PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + D+++ Sbjct: 412 KGAKQGYYPHQLVMTATPIPRTLAMTAYADLETSIIDELPPGRTPIQTVAIPDTKRDDIV 471 Query: 473 ERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530 ER+K L+EGK+AYW+C I+E + ++ + L I ++HGRM +K Sbjct: 472 ERVKNACLNEGKQAYWVCTLIDESEVLEAQAAADTAEDLQRKLPDVKIGLVHGRMKPAEK 531 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 ++VM FK LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S Sbjct: 532 QAVMREFKENKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVAS 591 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 C+LLYH PLSK + RL VL+ + DGF+IA+ DL+ R GE+LG KQ+G+ F IA Sbjct: 592 HCVLLYHSPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLI 651 Query: 651 LHDSLLEIARKDAKHILTQDPD 672 L+ ++ A+HI PD Sbjct: 652 RDQRLIPEVQRIARHIHDSYPD 673 >gi|66043471|ref|YP_233312.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. syringae B728a] gi|289672854|ref|ZP_06493744.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. syringae FF5] gi|63254178|gb|AAY35274.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. syringae B728a] Length = 691 Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust. Identities = 255/680 (37%), Positives = 394/680 (57%), Gaps = 30/680 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 ++ +GVG+ + L+K+ ET D+LF+ P + DR I + + I Sbjct: 9 VTALKGVGEAMAEKLAKV-----GLET-LQDVLFHLPLRYQDRTRIVPIGALRPGQDAVI 62 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G +S + + KRR + L DGTG ++L FY + K G + G+ + Sbjct: 63 EGVVS-GADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120 Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187 + + + HP Y + D P+ + +Y GL+ +++ ++L+ L LP+ Sbjct: 121 ASGLEIYHPEY-RAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIAL 240 W+ ++L + + +A +H+P D E W A+ RLA++ELL Q++ Sbjct: 180 WLPEELARDYQLAPLDDAIRYLHHPPADADVEELALGHHW---AQHRLAFEELLTHQLSQ 236 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 +R+ + + + V K+ ++ L N+ F+PT +Q+ K++ D+SQ MLR++QG Sbjct: 237 QRLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQG 296 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA +A A+EAG Q +MAP ILA+QHY +++ + + V + G + Sbjct: 297 DVGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLK 356 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 R +LE+IA G +++GTHALFQD +Q+ L LVI+DEQHRFGVQQRL L +K Sbjct: 357 GKARVASLEQIAGGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVG 415 Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PH L+MTATPIPRTL +++ D+D S + E P GR P+ TV++ +R EV+ER++ Sbjct: 416 GLMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVR 475 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +EG++AYW+C IEE +E ++ + L + +IHGRM +K ++M Sbjct: 476 AACAEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGDVRVGLIHGRMKPAEKAAIMA 535 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK G +LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG +S C+LL Sbjct: 536 EFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLL 595 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 YHPPLS+ RL +++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A L Sbjct: 596 YHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADL 655 Query: 656 LEIARKDAKHILTQDPDLTS 675 L R A+ +L + P S Sbjct: 656 LPAVRDAAQALLERWPQHVS 675 >gi|71733507|ref|YP_272494.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554060|gb|AAZ33271.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322268|gb|EFW78364.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. glycinea str. B076] gi|320331916|gb|EFW87854.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. glycinea str. race 4] Length = 691 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 255/680 (37%), Positives = 393/680 (57%), Gaps = 30/680 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 ++ +GVG+ + L+++ ET D+LF+ P + DR I + + I Sbjct: 9 VTALKGVGEAMAEKLARV-----GLET-LQDVLFHLPLRYQDRTRVVPIGALRPGQDAVI 62 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G +S + + KRR I L DGTG ++L FY + K G + G+ + Sbjct: 63 EGVVS-GADVVMGKRRSLLIRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120 Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187 + + + HP Y + D P+ + +Y GL+ +++ ++L+ L LP+ Sbjct: 121 ASGLEIYHPEY-RAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIAL 240 W+ +L + + +A +H+P D E W A+ RLA++ELL Q++ Sbjct: 180 WLPDELARDYQLAPLDDAIRYLHHPPADADVEELALGHHW---AQHRLAFEELLTHQLSQ 236 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 +R+ + + + V K+ ++ L N+ F+PT +Q+ K++ D+SQ MLR++QG Sbjct: 237 QRLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQG 296 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA +A A+EAG Q +MAP ILA+QHY +++ + + V + G + Sbjct: 297 DVGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLK 356 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 R +LE+IA G +++GTHALFQD +Q+ L LVI+DEQHRFGVQQRL L +K Sbjct: 357 GKARATSLEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVG 415 Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PH L+MTATPIPRTL +++ D+D S + E P GR P+ TV++ +R EV+ER++ Sbjct: 416 GLMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVR 475 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +EG++AYW+C IEE +E ++ + L + +IHGRM +K ++M Sbjct: 476 AACAEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGEVRVGLIHGRMKPAEKAAIMA 535 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK G +LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG +S C+LL Sbjct: 536 EFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLL 595 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 YHPPLS+ RL +++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A L Sbjct: 596 YHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADL 655 Query: 656 LEIARKDAKHILTQDPDLTS 675 L R A+ +L + P S Sbjct: 656 LPAVRDAAQALLERWPQHVS 675 >gi|165924238|ref|ZP_02220070.1| ATP-dependent DNA helicase RecG [Coxiella burnetii RSA 334] gi|165916317|gb|EDR34921.1| ATP-dependent DNA helicase RecG [Coxiella burnetii RSA 334] Length = 581 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 238/535 (44%), Positives = 344/535 (64%), Gaps = 28/535 (5%) Query: 159 VYSLPTGLSVDLFKKIIVEALSRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHN 211 +Y GLS ++ +I ++L+ L +LPE I L P++ EA +H+ Sbjct: 39 IYPTTKGLSQTKWRHLINQSLNYLKDPNFVEELLPEEIRTPL----RLPTLTEALFYVHS 94 Query: 212 PRKAKDFEWTS----PARERLAYDELLAGQIAL----LLMRKQFKKEIGIPINVEGKIAQ 263 P + P+++RLA++EL+A Q+ L LL+R Q PI ++ + Sbjct: 95 PPHNAPVDLLQASKHPSQQRLAFEELVAQQLGLQQWRLLIRTQ-----PAPILIKNNWQE 149 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K+ R + F T +Q+ I +I QD+S+ MLR+LQGDVGSGKT+VA +A+ AVE G Q Sbjct: 150 KLKRALTFELTSAQKRVIGEINQDLSKPKPMLRLLQGDVGSGKTIVAAMAILKAVENGYQ 209 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 + IMAP +LA+QHY+ +++ I V + G++ + R K L+ IA GQ +IIGTH Sbjct: 210 SAIMAPTELLAEQHYQVFQRWFSPLGIRVGWLAGSLTPSAREKTLQEIASGQLSVIIGTH 269 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSL 440 ALFQ ++ + +L +++DEQHRFGV QRL L +KAT PH L+MTATPIPRTL +T+ Sbjct: 270 ALFQAAVTFQQLAFIVIDEQHRFGVHQRLALKEKATPNYHPHQLIMTATPIPRTLAMTAY 329 Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500 D+D S I E+P GRKPI TV+I +R D+VIER+K +GK+ YW+C I + + Sbjct: 330 ADLDFSIIDEQPPGRKPITTVLISNSRRDKVIERIKKNCEQGKQVYWVCTLITDSEVLQC 389 Query: 501 RSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + F L + FT+ S+ +IHGR++ +K+ VM +FKNG LL+ATTVIEVG+DV + Sbjct: 390 ETAEATFKKLQQSFTNLSVGLIHGRLTKEEKDVVMGAFKNGDIDLLVATTVIEVGVDVPN 449 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619 AS+++IEN+E GLAQ+HQLRGRVGRGE+ S C+LLY PLSKN+ RL++L++T+DGFL Sbjct: 450 ASLMVIENSERLGLAQIHQLRGRVGRGEQKSYCVLLYQEPLSKNARARLTLLRDTQDGFL 509 Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 +A++DL+ R GE+LG +QSG+ +F IA H LL RK A IL + + T Sbjct: 510 VAQKDLELRGPGELLGARQSGLFRFRIADVIRHQHLLPAVRKAAFLILRRYSEFT 564 >gi|159028665|emb|CAO88136.1| recG [Microcystis aeruginosa PCC 7806] Length = 822 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 250/684 (36%), Positives = 404/684 (59%), Gaps = 29/684 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL VG++ + L ++ N + DLL+Y+P +D + I+ ++E VT Sbjct: 128 PLKYLAEVGERKASLLERL------NLHKVEDLLYYYPRDHVDYSRQVNIANLTEGETVT 181 Query: 72 ITGYISQHSSFQLQKRRP---YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK------ 122 + G + + + F K +++LL D TG+I L FY T + EG+K Sbjct: 182 LVGNVKRCNCFNSPKNTKLAIFELLLQDRTGQIKLNRFYAGTRYNNRAWQEGQKKLYPVG 241 Query: 123 --ITVTGKIKKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTGLSVDLFKKII 175 + V+G +K K + + +P + +S + + I VY L G+ DL +K + Sbjct: 242 SVVAVSGLVKAGKYGLTLENPEFELLDSSGGSIESLKIGRILPVYPLTDGVPADLIRKAV 301 Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235 V A + + + + L ++ + A IH P + + S AR RL +DE Sbjct: 302 VTAFGAVEAIKDPLPFGLKKQYGLIDLKTAITNIHFPNNS---DILSQARRRLVFDEFFF 358 Query: 236 GQIALLLMRKQFKKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 Q+ L R+Q+++ I + +G++ + + IPF T +Q+ I++IL+D+ M Sbjct: 359 LQLGFLRRRQQYRQTQKSAIFSAKGQLIDQFNQIIPFQLTNAQKRVIEEILEDLDSSTPM 418 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R++QGDVGSGKT+V + A+ AA+++G QA +MAP +LA+QHY + + + VE+ Sbjct: 419 NRLVQGDVGSGKTIVGVYAILAALQSGYQAALMAPTEVLAEQHYRKLVSWFNLLHLPVEL 478 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 +TG+ A RR+ ++ G+ +++GTHAL QD++ + KL LV++DEQHRFGVQQR +L Sbjct: 479 LTGSTKTAKRREIHAQLETGELPLLVGTHALIQDAVNFRKLGLVVIDEQHRFGVQQRARL 538 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 K +PHVL MTATPIPRTL LT GD+D+S+I E P GR+PI+T + N+ + Sbjct: 539 LSKGESPHVLTMTATPIPRTLALTLHGDLDVSQIDELPPGRQPIQTTALNGNQRRAAYDL 598 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKES 532 ++ +++G++AY I P IEE ++ + R+ VE + +L E +I ++HGRMS +KE Sbjct: 599 IRREIAQGRQAYVIFPLIEESEKLDVRAAVEEYQNLSEKIFPNFNIGLLHGRMSSAEKEE 658 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 ++ +F++ +++++TTVIEVG+DV +A++++IENAE FGL+QLHQLRGRVGRG S C Sbjct: 659 ILTAFRDNILQIIVSTTVIEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGSHQSYC 718 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +LL S NS RL+VL+ ++DGF I+E D++ R GE+LG +QSG+P F +A Sbjct: 719 LLLSGSN-SANSRQRLTVLEQSQDGFFISEMDMRFRGPGEVLGQRQSGLPDFALASLVED 777 Query: 653 DSLLEIARKDAKHILTQDPDLTSV 676 +L +AR A+ I+ DP L ++ Sbjct: 778 QEVLVLARDAAEKIMLDDPHLITL 801 >gi|330952140|gb|EGH52400.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae Cit 7] Length = 691 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 255/680 (37%), Positives = 393/680 (57%), Gaps = 30/680 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 ++ +GVG+ + L+K+ ET D+LF+ P + DR I + + I Sbjct: 9 VTALKGVGEAMAEKLAKV-----GLET-LQDVLFHLPLRYQDRTRIVPIGALRPGQDAVI 62 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G +S + + KRR + L DGTG ++L FY + K G + G+ + Sbjct: 63 EGVVS-GADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120 Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187 + + + HP Y + D P+ + +Y GL+ +++ ++L+ L LP+ Sbjct: 121 ASGLEIYHPEY-RAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIAL 240 W+ +L + + +A +H+P D E W A+ RLA++ELL Q++ Sbjct: 180 WLPDELARDYQLAPLDDAIRYLHHPPADADVEELALGHHW---AQHRLAFEELLTHQLSQ 236 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 +R+ + + + V K+ ++ L N+ F+PT +Q+ K++ D+SQ MLR++QG Sbjct: 237 QRLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQG 296 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA +A A+EAG Q +MAP ILA+QHY +++ + + V + G + Sbjct: 297 DVGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLK 356 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 R +LE+IA G +++GTHALFQD +Q+ L LVI+DEQHRFGVQQRL L +K Sbjct: 357 GKARVASLEQIAGGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVG 415 Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PH L+MTATPIPRTL +++ D+D S + E P GR P+ TV++ +R EV+ER++ Sbjct: 416 GLMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVR 475 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +EG++AYW+C IEE +E ++ + L + +IHGRM +K ++M Sbjct: 476 AACAEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGDVRVGLIHGRMKPAEKAAIMA 535 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK G +LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG +S C+LL Sbjct: 536 EFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLL 595 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 YHPPLS+ RL +++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A L Sbjct: 596 YHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADL 655 Query: 656 LEIARKDAKHILTQDPDLTS 675 L R A+ +L + P S Sbjct: 656 LPAVRDAAQALLERWPQHVS 675 >gi|257481743|ref|ZP_05635784.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330890912|gb|EGH23573.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. mori str. 301020] Length = 691 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 254/680 (37%), Positives = 393/680 (57%), Gaps = 30/680 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 ++ +GVG+ + L+++ ET D+LF+ P + DR I + + I Sbjct: 9 VTALKGVGEAMAEKLARV-----GLET-LQDVLFHLPLRYQDRTRVVPIGALRPGQDAVI 62 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G +S + + KRR + L DGTG ++L FY + K G + G+ + Sbjct: 63 EGVVS-GADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120 Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187 + + + HP Y + D P+ + +Y GL+ +++ ++L+ L LP+ Sbjct: 121 ASGLEIYHPEY-RAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIAL 240 W+ +L + + +A +H+P D E W A+ RLA++ELL Q++ Sbjct: 180 WLPDELARDYQLAPLDDAIRYLHHPPADADVEELALGHHW---AQHRLAFEELLTHQLSQ 236 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 +R+ + + + V K+ ++ L N+ F+PT +Q+ K++ D+SQ MLR++QG Sbjct: 237 QRLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQG 296 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA +A A+EAG Q +MAP ILA+QHY +++ + + V + G + Sbjct: 297 DVGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLK 356 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 R +LE+IA G +++GTHALFQD +Q+ L LVI+DEQHRFGVQQRL L +K Sbjct: 357 GKARATSLEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVG 415 Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PH L+MTATPIPRTL +++ D+D S + E P GR P+ TV++ +R EV+ER++ Sbjct: 416 GLMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVR 475 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +EG++AYW+C IEE +E ++ + L + +IHGRM +K ++M Sbjct: 476 AACAEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGEVRVGLIHGRMKPAEKAAIMA 535 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK G +LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG +S C+LL Sbjct: 536 EFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLL 595 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 YHPPLS+ RL +++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A L Sbjct: 596 YHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADL 655 Query: 656 LEIARKDAKHILTQDPDLTS 675 L R A+ +L + P S Sbjct: 656 LPAVRDAAQALLERWPQHVS 675 >gi|118580930|ref|YP_902180.1| ATP-dependent DNA helicase RecG [Pelobacter propionicus DSM 2379] gi|118503640|gb|ABL00123.1| ATP-dependent DNA helicase RecG [Pelobacter propionicus DSM 2379] Length = 778 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 258/701 (36%), Positives = 394/701 (56%), Gaps = 40/701 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSK-IINCGNANETRFIDLLFYHPSSFIDRH-------YRPK 60 L P+ + +GVG K S L++ I C D L+ P+ + DR RP Sbjct: 74 LETPMHSVKGVGPKLSALLARRGIAC-------VEDALYLLPNRYEDRRELRPIAALRPG 126 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 +E+ R+++ S+ RR ++ LL D + +TL +F +K V+ +G Sbjct: 127 FNELFSGRVLSAESVTSRGG------RRFFEALLADDSATVTLKWFNCNPTFMKRVWKQG 180 Query: 121 RKITVTGKIKKLKNRIIMVHP--HYIFHNSQD--------VNFPLIEAVYSLPTGLSVDL 170 R+ VTG++ + +++ + HP ++ S+ +NF I VY L GLS + Sbjct: 181 RRALVTGEVSRFASQLEVHHPDVEWLAEGSEPRDLLSADPLNFGGIIPVYPLTEGLSQKV 240 Query: 171 FKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP---RKAKDFEWTSPARE 226 ++++ E + R +P + E + +LL++ P + + +H P + D A Sbjct: 241 MRRVMREVVERFIPFVRELVPPELLERLGLPGLRHSLGHLHTPPVDERLDDLNGGCSAAH 300 Query: 227 R-LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285 R +A+DE ++ L L R E GI V + ++R +PF T++Q + +I Sbjct: 301 RAIAFDEFFFWELGLALKRCGVTLEEGIAFQVNHLYTKPLVRMLPFQLTRAQRRVLSEIK 360 Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345 QDM + M R++QGDVGSGKTLVAL+A AVE G Q IMAP ILA+QH+ I ++ Sbjct: 361 QDMMAPHPMHRLVQGDVGSGKTLVALMAALVAVENGYQVAIMAPTEILAEQHWHTIHRWC 420 Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405 + I +IT M + AL R+A G A I+IGTHA+ Q+ +++ +L L I+DEQHR Sbjct: 421 ADLGIATVLITAGMRGREKSDALGRVADGSARIVIGTHAVIQEKVEFARLGLGIIDEQHR 480 Query: 406 FGVQQR--LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463 FGV QR L+ K P +L+MTATPIPRTL +T GD+ +S I E P GR P++T + Sbjct: 481 FGVLQRAILRKKGKGCNPDILVMTATPIPRTLAMTLFGDLSLSVIDELPPGRTPVETRVT 540 Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAII 521 P ++ V + ++ + +G++AY + P +EE + S ++ + L + + ++ Sbjct: 541 PESQRVRVYDTIRREVGQGRQAYVVYPLVEENERSELKAAAQMAEQLGKEIFPDLRVGLL 600 Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581 HGRM+ +KESVM SFK +L++TTVIEVGIDV +A++++IE+AE FGL+QLHQLRG Sbjct: 601 HGRMNPQEKESVMASFKARELDILVSTTVIEVGIDVPNATVMVIEHAERFGLSQLHQLRG 660 Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641 RVGRG S CIL+ + S++ RL V++ T DGF IAE DL+ R G+ LG +QSGM Sbjct: 661 RVGRGAARSRCILMTNGRPSEDGERRLKVMEATNDGFRIAEADLEIRGPGDFLGTRQSGM 720 Query: 642 PKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682 P F +A +LLE AR+ A +L QDP L S +R Sbjct: 721 PDFRVANILRDGALLEQARQAAFGLLEQDPGLASSGNAPLR 761 >gi|330876520|gb|EGH10669.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330964238|gb|EGH64498.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. actinidiae str. M302091] Length = 691 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 255/683 (37%), Positives = 397/683 (58%), Gaps = 36/683 (5%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 ++ +GVG+ + L+K+ G N D+LF+ P + DR I +S + I Sbjct: 9 VTALKGVGEAMAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRIVPIGALSPGQDAVI 62 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G +S + + KRR + L DGTG ++L FY + K G + G+ + Sbjct: 63 EGVVS-GADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120 Query: 133 KNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPEW 188 + + + HP Y I + + +Y GL+ +++ ++L+ L LP+W Sbjct: 121 ASGLEIYHPEYRAITGDEPPPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPDW 180 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIALL 241 + ++L + + +A +H+P D + W A+ RLA++ELL Q++ Sbjct: 181 LPEELARDYQLAPLDDAIRYLHHPPADADVDELALGHHW---AQHRLAFEELLTHQLSQQ 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R+ + + + + K+ ++ L N+ F+PT +Q+ K++ D+SQ MLR++QGD Sbjct: 238 RLRESLRSQRAPALPLAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VA +A A+EAG Q +MAP ILA+QHY +++ + + V + G + Sbjct: 298 VGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R +LE+IA G +++GTHALFQD +Q+ L LVI+DEQHRFGVQQRL L +K Sbjct: 358 KARIASLEQIATGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVGG 416 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 PH L+MTATPIPRTL +++ D+D S + E P GR P+ TV++ +R EV+ER++ Sbjct: 417 LMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVRA 476 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-----IAIIHGRMSDIDKES 532 +EG++AYW+C IEE +E ++ + +E TS+ + +IHGRM +K + Sbjct: 477 ACAEGRQAYWVCTLIEESEELTCKAA----ETTYEELTSALGEVRVGLIHGRMKPAEKAA 532 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +M FK G +LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG +S C Sbjct: 533 IMAEFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHC 592 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +LLYHPPLS+ RL +++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A Sbjct: 593 VLLYHPPLSQIGRQRLGIMRETNDGFIIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRD 652 Query: 653 DSLLEIARKDAKHILTQDPDLTS 675 LL R A+ +L + P S Sbjct: 653 ADLLPAVRDAAQTLLERWPQHVS 675 >gi|54294931|ref|YP_127346.1| ATP-dependent DNA helicase RecG [Legionella pneumophila str. Lens] gi|53754763|emb|CAH16250.1| ATP-dependent DNA helicase RecG [Legionella pneumophila str. Lens] Length = 690 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 254/668 (38%), Positives = 385/668 (57%), Gaps = 30/668 (4%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS 77 GVG + +K+ CG DLLF+ P + DR I ++ I G++ Sbjct: 11 GVGPTIA---AKLAKCGIFT---IQDLLFHLPYKYQDRTRITPIQDLRSNEWCVIAGHVC 64 Query: 78 QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137 + + + KR + D TG + L FF+ + ++ I G+++ N++ Sbjct: 65 K-TEIKYGKRMMLNCYVEDKTGVVKLRFFHFNKQQIQ-ALNNSAMIRAFGEVRGFNNQLE 122 Query: 138 MVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSR----LPVLPEWIE 190 M+HP Y N Q+ +F + E +Y GL+ ++++ AL + L L EW+ Sbjct: 123 MIHPEYQLIN-QESDFHVEETLTPIYPSTQGLTQTRLRQLVKIALEQSEHELHQL-EWMS 180 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS------PARERLAYDELLAGQIALLLMR 244 + LQ+ +F + EA ++HNP D ++ PA +RL +DELLA Q+++ R Sbjct: 181 EKQLQENNFYDLGEAIKLLHNP--PPDISLSNLEAGEHPALKRLIFDELLAQQLSMQFAR 238 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 + K I + I ++ + ++PFS T +Q+ K+I D++Q MLR+LQGDVG+ Sbjct: 239 QSRSKLQAPAIFFDNAIHKRFIESLPFSLTNAQQRVFKEISVDLTQSKPMLRLLQGDVGA 298 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKT++A +A A+ G Q MAP +L++QH + K+ + I V ++G M R Sbjct: 299 GKTIIAALAALQAISQGFQVAFMAPTDLLSEQHTNSLGKWLEPIGINVLRLSGKMKTTER 358 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---- 420 + AL + +I+GTHALFQ+ +++ +L LVI+DEQHRFGV+QRL L QK Sbjct: 359 KNALAALQDNSCKLIVGTHALFQEQVEFARLGLVIIDEQHRFGVEQRLLLQQKGQLNQLI 418 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 PH LLMTATPIPRTL ++ +DIS I E P GR PI T ++ ++ + +IERL+ +S Sbjct: 419 PHQLLMTATPIPRTLSMSHFAHLDISVIDELPPGRMPITTAVLNQDKRELIIERLQAAIS 478 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKN 539 GK+AYW+C IEE ++ + + L E + + + ++HGRM +KE+ M +FK Sbjct: 479 NGKQAYWVCTLIEESEKLQCMAATDTSKKLQEQLSFARVGLVHGRMKAFEKEATMAAFKQ 538 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S C+LLY P Sbjct: 539 GEIDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGNNQSHCLLLYQSP 598 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 LS+ RL ++++T DGFLI+E+DL+ R GEILG KQ+G +F IA + +L I Sbjct: 599 LSQQGAERLKIMRSTTDGFLISEKDLELRGSGEILGTKQTGFRQFKIANLQRDKTLFTIL 658 Query: 660 RKDAKHIL 667 R AK ++ Sbjct: 659 RPIAKQLV 666 >gi|326423778|ref|NP_759830.2| ATP-dependent DNA helicase RecG [Vibrio vulnificus CMCP6] gi|319999140|gb|AAO09357.2| ATP-dependent DNA helicase RecG [Vibrio vulnificus CMCP6] Length = 693 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 259/651 (39%), Positives = 387/651 (59%), Gaps = 26/651 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG K + L KI + DLLF+ P + DR I+++ Sbjct: 10 PLTSLSGVGAKVAEKLEKI------GLSSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G++ Q + KR+ + L+DG G ITL FF T +KN F EG+ + G+IK+ Sbjct: 64 VQGHVMQVDTL-FGKRKMLTVKLSDGNGTITLRFF-NFTAAMKNNFAEGKLVHAYGEIKR 121 Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186 + +VHP Y F DV L VY GL + + +A++ L + Sbjct: 122 GNMGLEIVHPDYKFFAPTQKPDVEQSLT-PVYPTTDGLRQITLRNLTDQAIALLDKAAVQ 180 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW----TSPARERLAYDELLAGQIALLL 242 E + L ++ ++ +A +IIH P + E PA+ RL +ELLA +++L Sbjct: 181 ELLPAGLYDQQL--TMGQALHIIHRPSPEINLELFDEGKHPAQVRLIMEELLAQNLSMLA 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R + ++++ +P+ ++ Q++L +PFSPT +Q +++I +D+ + + M+R++QGDV Sbjct: 239 VRSKGQQDVALPLPPVHQLKQQLLAQLPFSPTNAQARVVQEIEEDLQKAHPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+E G Q +MAP +LA+QH + + I V + G + Sbjct: 299 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFEKMGIPVGWLAGKLKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 + L RIA G+A +++GTHALFQ+ + + L LVI+DEQHRFGV QRL+L +K Sbjct: 359 AKEAELARIASGEAKMVVGTHALFQEHVVFDHLALVIIDEQHRFGVHQRLELREKGAKQG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + ++++ER++ Sbjct: 419 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKREDIVERIRHA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L+EGK+AYW+C I+E + ++ + L I ++HGRM +K++VM + Sbjct: 479 CLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVRIGLVHGRMKPAEKQAVMQA 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FKN LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLY Sbjct: 539 FKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 H PLSK + RLSVL+ + DGF+IA+ DL+ R GE+LG KQ+G+ F IA Sbjct: 599 HAPLSKTAQKRLSVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIA 649 >gi|330972219|gb|EGH72285.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. aceris str. M302273PT] Length = 691 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 256/680 (37%), Positives = 393/680 (57%), Gaps = 30/680 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 ++ +GVG+ + L+K+ ET D+LF+ P + DR I + + I Sbjct: 9 VTALKGVGEAMAEKLAKV-----GLET-LQDVLFHLPLRYQDRTRIVPIGALRPGQDAVI 62 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G +S + + KRR + L DGTG ++L FY + K G + G+ + Sbjct: 63 EGVVS-GADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120 Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187 + + + HP Y + D P+ + +Y GL+ +++ ++L+ L LP+ Sbjct: 121 ASGLEIYHPEY-RAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIAL 240 W+ ++L + + +A +H+P D E W A+ RLA++ELL Q++ Sbjct: 180 WLPEELARDYQLAPLDDAIRYLHHPPADADVEELALGHHW---AQHRLAFEELLTHQLSQ 236 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 +R+ + + + V K+ ++ L N+ F+PT +Q+ K+I D+SQ MLR +QG Sbjct: 237 QRLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEIAYDLSQPEPMLRPIQG 296 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA +A A+EAG Q +MAP ILA+QHY +++ + + V + G + Sbjct: 297 DVGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLK 356 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 R +LE+IA G +++GTHALFQD +Q+ L LVI+DEQHRFGVQQRL L +K Sbjct: 357 GKARVASLEQIAGGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVG 415 Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PH L+MTATPIPRTL +++ D+D S + E P GR P+ TV++ +R EV+ER++ Sbjct: 416 GLMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVR 475 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +EG++AYW+C IEE +E ++ + L + +IHGRM +K ++M Sbjct: 476 AACAEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGDVRVGLIHGRMKPAEKAAIMA 535 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK G +LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG +S C+LL Sbjct: 536 EFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLL 595 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 YHPPLS+ RL +++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A L Sbjct: 596 YHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADL 655 Query: 656 LEIARKDAKHILTQDPDLTS 675 L R A+ +L + P S Sbjct: 656 LPAVRDAAQALLERWPQHVS 675 >gi|261494245|ref|ZP_05990744.1| helicase RecG [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310097|gb|EEY11301.1| helicase RecG [Mannheimia haemolytica serotype A2 str. OVINE] Length = 693 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 266/682 (39%), Positives = 389/682 (57%), Gaps = 34/682 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+ GVG S LS+I N DLLF+ P + DR I+++ E T Sbjct: 10 PLTALSGVGAAISEKLSRI-GINNVQ-----DLLFHLPMRYEDRTRITPIADVRPESFAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I GY+ Q + Q KR + L+D T +I L FF M KN G ++ G+IK+ Sbjct: 64 IEGYV-QLTEVQFGKRPILSVTLSDSTSKIMLKFFNFNAGM-KNSLATGVRVKAFGEIKR 121 Query: 132 LKNRIIMVHPHY-IFHNSQDVNFPLIEA-----VYSLPTGLSVDLFKKIIVEALSRLPVL 185 + + HP Y I ++Q PL+ A +YS GL +K+ +AL+ +L Sbjct: 122 GRFMAEIHHPEYQIIRDNQ----PLVLAETLTPIYSTTEGLKQASLRKLTEQALA---LL 174 Query: 186 PEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQI 238 + +LL + P S+ EA ++H P E PA++RL ++ELLA + Sbjct: 175 EKVKVAELLPDEYNPHKYSLKEALQLLHRPPPTISAEVLEKGDHPAQKRLIFEELLAHNL 234 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 A+ +R K++ + + I Q+ L ++PF PT +Q DI QD+++ + M+R++ Sbjct: 235 AMQQLRLGVKQQYAEALTYQTDIKQRFLDSLPFKPTHAQSRVTADIEQDLAKPHPMMRLV 294 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKTLVA +A A++ G Q +MAP ILA+QH + I V + G Sbjct: 295 QGDVGSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLNPFGIEVGWLAGK 354 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + R LE I +G +IIGTHALFQD+++++ L LVI+DEQHRFGV QRL L +K Sbjct: 355 VKGKARTAQLEAIKNGDVQMIIGTHALFQDNVEFHHLALVIIDEQHRFGVHQRLTLREKG 414 Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 PH L+MTATPIPRTL +T D+D S I E P GR PI TV+I +R E+++R Sbjct: 415 AKENNYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVISEDRRAEIVQR 474 Query: 475 L-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532 + + E ++AYW+C I+E + ++ L I ++HGR+ +K++ Sbjct: 475 VYQACKQEHRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRLKPQEKQA 534 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +M FK LL+ATTVIEVG+DV +AS++IIEN+E GLAQLHQLRGRVGRG S C Sbjct: 535 IMAEFKAANLDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHC 594 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +L+Y PPL K S RL V+++++DGF IAE+DL+ R GEILG KQ+GM +F +A Sbjct: 595 VLMYKPPLGKISSKRLQVMRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVADLMRD 654 Query: 653 DSLLEIARKDAKHILTQDPDLT 674 ++ + ++ AK I++++ L Sbjct: 655 RKMIPLVQRYAKQIISENQPLA 676 >gi|289625459|ref|ZP_06458413.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330866514|gb|EGH01223.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 691 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 254/680 (37%), Positives = 393/680 (57%), Gaps = 30/680 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 ++ +GVG+ + L+++ ET D+LF+ P + DR I + + I Sbjct: 9 VTALKGVGEAMAEKLARV-----GLET-LQDVLFHLPLRYQDRTRVVPIGALRPGQDAVI 62 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G +S + + KRR + L DGTG ++L FY + K G + G+ + Sbjct: 63 EGVVS-GADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120 Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187 + + + HP Y + D P+ + +Y GL+ +++ ++L+ L LP+ Sbjct: 121 ASGLEIYHPEY-RAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIAL 240 W+ +L + + +A +H+P D E W A+ RLA++ELL Q++ Sbjct: 180 WLPDELARDYQLAPLDDAIRYLHHPPADADVEELALGHHW---AQHRLAFEELLTHQLSQ 236 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 +R+ + + + V K+ ++ L N+ F+PT +Q+ K++ D+SQ MLR++QG Sbjct: 237 QRLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQG 296 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA +A A+EAG Q +MAP ILA+QHY +++ + + V + G + Sbjct: 297 DVGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLK 356 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 R +LE+IA G +++GTHALFQD +Q+ L LVI+DEQHRFGVQQRL L +K Sbjct: 357 GKARATSLEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVG 415 Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PH L+MTATPIPRTL +++ D+D S + E P GR P+ TV++ +R EV+ER++ Sbjct: 416 GLMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPLGRTPVNTVLVADSRRLEVVERVR 475 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +EG++AYW+C IEE +E ++ + L + +IHGRM +K ++M Sbjct: 476 AACAEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGEIRVGLIHGRMKPAEKAAIMA 535 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK G +LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG +S C+LL Sbjct: 536 EFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLL 595 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 YHPPLS+ RL +++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A L Sbjct: 596 YHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADL 655 Query: 656 LEIARKDAKHILTQDPDLTS 675 L R A+ +L + P S Sbjct: 656 LPAVRDAAQALLERWPQHVS 675 >gi|237797799|ref|ZP_04586260.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020649|gb|EGI00706.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. oryzae str. 1_6] Length = 691 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 253/680 (37%), Positives = 394/680 (57%), Gaps = 30/680 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 ++ +GVG + L+K+ G N D+LF+ P + DR I + + I Sbjct: 9 VTALKGVGDAMAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRIVPIGALRPGQDAVI 62 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G +S + + KRR + L DGTG ++L FY + K G + G+ + Sbjct: 63 EGVVS-GADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120 Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187 + + + HP Y + D P+ + +Y GL+ +++ ++L+ L LP+ Sbjct: 121 ASGLEIYHPEY-RAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIAL 240 W+ ++L + + +A +H+P D + W A+ RLA++ELL Q++ Sbjct: 180 WLPEELARDYQLAPLDDAIRYLHHPPADADVDELALGHHW---AQHRLAFEELLTHQLSQ 236 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 +R+ + + + + K+ ++ L N+ F+PT +Q+ K++ D+SQ MLR++QG Sbjct: 237 QRLRESLRSQRAPALPLAKKLPKQFLANLGFTPTGAQQRVGKEVAYDLSQPEPMLRLIQG 296 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA +A A+EAG Q +MAP ILA+QHY +++ + + V + G + Sbjct: 297 DVGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLK 356 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 R +LE+IA G +++GTHALFQD +Q+ L LVI+DEQHRFGVQQRL L +K Sbjct: 357 GKARVTSLEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVG 415 Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PH L+MTATPIPRTL +++ D+D S + E P GR P+ TV++ +R EV+ER++ Sbjct: 416 GLMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVR 475 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +EG++AYW+C IEE +E ++ + L + +IHGRM ++K ++M Sbjct: 476 AACAEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGEVRVGLIHGRMKPVEKAAIMA 535 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK G +LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG +S C+LL Sbjct: 536 EFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLL 595 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 YHPPLS+ RL +++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A L Sbjct: 596 YHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADL 655 Query: 656 LEIARKDAKHILTQDPDLTS 675 L R A+ +L + P S Sbjct: 656 LPAVRDAAQALLERWPQHVS 675 >gi|289646385|ref|ZP_06477728.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. aesculi str. 2250] Length = 691 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 254/680 (37%), Positives = 393/680 (57%), Gaps = 30/680 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 ++ +GVG+ + L+++ ET D+LF+ P + DR I + + I Sbjct: 9 VTALKGVGEAMAEKLARV-----GLET-LQDVLFHLPLRYQDRTRVVPIGALRPGQDAVI 62 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G +S + + KRR + L DGTG ++L FY + K G + G+ + Sbjct: 63 EGVVS-GADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120 Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187 + + + HP Y + D P+ + +Y GL+ +++ ++L+ L LP+ Sbjct: 121 ASGLEIYHPEY-RAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIAL 240 W+ +L + + +A +H+P D E W A+ RLA++ELL Q++ Sbjct: 180 WLPDELARDYQLAPLDDAIRYLHHPPADADVEELALGHHW---AQHRLAFEELLTHQLSQ 236 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 +R+ + + + V K+ ++ L N+ F+PT +Q+ K++ D+SQ MLR++QG Sbjct: 237 QRLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQG 296 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA +A A+EAG Q +MAP ILA+QHY +++ + + V + G + Sbjct: 297 DVGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLK 356 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 R +LE+IA G +++GTHALFQD +Q+ L LVI+DEQHRFGVQQRL L +K Sbjct: 357 GKARATSLEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVG 415 Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PH L+MTATPIPRTL +++ D+D S + E P GR P+ TV++ +R EV+ER++ Sbjct: 416 GLMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPLGRTPVNTVLVADSRRLEVVERVR 475 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +EG++AYW+C IEE +E ++ + L + +IHGRM +K ++M Sbjct: 476 AACAEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGEVRVGLIHGRMKPAEKAAIMA 535 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK G +LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG +S C+LL Sbjct: 536 EFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLL 595 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 YHPPLS+ RL +++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A L Sbjct: 596 YHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADL 655 Query: 656 LEIARKDAKHILTQDPDLTS 675 L R A+ +L + P S Sbjct: 656 LPAVRDAAQALLERWPQHVS 675 >gi|294651650|ref|ZP_06728954.1| ATP-dependent DNA helicase RecG [Acinetobacter haemolyticus ATCC 19194] gi|292822499|gb|EFF81398.1| ATP-dependent DNA helicase RecG [Acinetobacter haemolyticus ATCC 19194] Length = 681 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 258/655 (39%), Positives = 390/655 (59%), Gaps = 47/655 (7%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLLF+ P + DR ++++ R + G + + F K++ LL D G++T Sbjct: 28 DLLFHLPRDYEDRSTIIPMNQLMVGRSYLLEGEV-RSIDFPPGKKKSLAALLQDDFGKVT 86 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHP--HYIFHNSQDVNFPL----I 156 L F Y + L + G ++ + G+++ + + HP I ++ PL + Sbjct: 87 LRF-YHIYKGLTDRIQVGNRLRIFGEVRVGARGLELYHPEIQVILQHT-----PLPKTQL 140 Query: 157 EAVYSLPTGLSVDLFKKIIVEALSR-----LPVLPEWIEKDLLQKKSFPSIAEAFNIIHN 211 A+Y GL+ ++ + +AL+ +LP + + + +A + IH Sbjct: 141 TAIYPSTEGLTQPKLREYVRQALAHHSDDLAELLPS-------KYSNGYELKQALHYIHE 193 Query: 212 PRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI-AQKIL 266 P + + + PA++RL ++EL+A QI+LL R+ + ++I P K+ A+++L Sbjct: 194 PPIDANMLQLNQGSHPAQQRLIFEELVAHQISLL-TRRAYIRQIAAPQFTSSKVLAKQLL 252 Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 ++PF T +Q+ K+ILQD+ Q+ MLR++QGDVG+GKTLVA IA A+EA Q + Sbjct: 253 ESLPFQMTNAQKRVSKEILQDLKQQQPMLRLVQGDVGAGKTLVAAIAACHALEAEWQVAL 312 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 MAP ILA+QHY K++ + I V ++G R +A + I G + +I+GTHALF Sbjct: 313 MAPTEILAEQHYLNFKRWFEPLGIDVAWLSGKQKGKARTQAEQHIREGHSQLIVGTHALF 372 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDI 443 QD++ + KL LVI+DEQHRFGV QRL L K PH L+MTATPIPRTL +++ GD+ Sbjct: 373 QDNVAFSKLGLVIIDEQHRFGVDQRLALRNKGADQFTPHQLVMTATPIPRTLAMSAYGDL 432 Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK------- 496 D S I E P GR PI+TV IP++R +EV++R+ EGK+AYW+C +E+ + Sbjct: 433 DTSVIDELPPGRTPIQTVTIPLDRREEVLQRIAQNCREGKQAYWVCTLVEQSETLDAQAA 492 Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556 E+ ++ + ERF L ++ ++HG+M +K++VM +FK+ +LLIATTVIEVG+D Sbjct: 493 EATYQEIKERFPDL------NVGLVHGKMKADEKQAVMQAFKDNQLQLLIATTVIEVGVD 546 Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616 V +ASI++IENAE GL+QLHQLRGRVGRG S C LLY PLS+N RLS+L+ + D Sbjct: 547 VPNASIMVIENAERLGLSQLHQLRGRVGRGATASFCALLYKTPLSQNGQERLSILRESND 606 Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671 GF+IAE+DL+ R GE+LG KQ+G F +A+ E D LL A A+ IL P Sbjct: 607 GFVIAEKDLEIRGPGELLGTKQTGDMGFRVARLERDDHLLTQAHYVAEQILKDYP 661 >gi|91763276|ref|ZP_01265240.1| ATP-dependent DNA helicase recG [Candidatus Pelagibacter ubique HTCC1002] gi|91717689|gb|EAS84340.1| ATP-dependent DNA helicase recG [Candidatus Pelagibacter ubique HTCC1002] Length = 683 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 260/684 (38%), Positives = 410/684 (59%), Gaps = 24/684 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L A L+ GVGKK L K DLL+ P S+ DR K+ ++ Sbjct: 10 LLADLTKLNGVGKKTMEILKK------KKVNNIFDLLWRLPKSYTDRTLVSKVCDLQIGV 63 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 I TI + F + P ++ D TG+I +FF ++ + ++T++GK Sbjct: 64 IQTIR-IVPLKYQFPRVRNLPNRVNCIDETGKIDCIFFNSHEGYVRKILPLNEEVTISGK 122 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV---YSLPTGLSVDLFKKIIVEALSRLPVL 185 I K R + +P YI SQD LIE + Y+L G++ + KII + L LP+L Sbjct: 123 IGNYKGRYQITNPTYI---SQDS--SLIENIDNKYTLTEGITEKTYNKIINQILKNLPIL 177 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 PEW +KD+L+ + S E+ +H+P+ ++++ S +RLAYDE+LA + +RK Sbjct: 178 PEWHDKDILKIFNNESWNESIIKLHDPKNIENYK--SDFYKRLAYDEILASFLVNSEIRK 235 Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + KK I N K + I+ + F+ T Q+ ++ DI +D++ K++M R+LQGDVGSG Sbjct: 236 KIKKIKKISKNFSEKAHKNIVNKLNFTLTNDQKISLGDINKDLNSKSKMFRLLQGDVGSG 295 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VALI+ + +G Q +MAP ILA+QHY KK I +E+++ + ++ Sbjct: 296 KTIVALISSLNVINSGFQVALMAPTEILARQHYTLAKKLFP-KDIKIELLSSKSENSEKK 354 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVL 424 + ++++ + + ++ GTHA+FQ I + L +I+DEQH+FGV+QR L+ K VL Sbjct: 355 RIIKKLENNEIQMVFGTHAIFQKKIIFANLGYIIIDEQHKFGVRQRKLLSDKGGDNCDVL 414 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 LM+ATPIPRTL ++ GD+D+S I EKP+ RK +KT ++ID+VI +K ++EG + Sbjct: 415 LMSATPIPRTLTMSVYGDMDVSIIKEKPSNRKEVKTYSKLESKIDDVINFVKKEINEGNQ 474 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544 +W+CP IEE K+ + +S V ++ L+E F + +A++HG++ + +KE +++ F N + Sbjct: 475 IFWVCPLIEESKKLDHQSSVTKYKFLNEIFPNKVALLHGKIENEEKEEILNKFLNKKYSI 534 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 L++TT+IEVGID +A++IIIENA FGL+QLHQLRGRVGRG + +SCIL++ LS N+ Sbjct: 535 LVSTTIIEVGIDFPNANVIIIENANKFGLSQLHQLRGRVGRGTKQASCILMFKSNLSVNA 594 Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 R+++LKN+ DGF I+EED+K R G++LG KQSG+ F +A P ++ L +A K K Sbjct: 595 KKRINILKNSNDGFEISEEDMKLRGFGDLLGFKQSGIKNFRLADPIQNEDLFLMAEKQIK 654 Query: 665 HILTQDPDLTSVRGQSIRILLYLY 688 I ++ D+ + LL LY Sbjct: 655 RIELENTDIKKYKA-----LLKLY 673 >gi|262373537|ref|ZP_06066815.1| ATP-dependent DNA helicase RecG [Acinetobacter junii SH205] gi|262311290|gb|EEY92376.1| ATP-dependent DNA helicase RecG [Acinetobacter junii SH205] Length = 681 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 253/646 (39%), Positives = 385/646 (59%), Gaps = 29/646 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLLF+ P + DR ++++ R + G + + F K++ + LL D G++T Sbjct: 28 DLLFHLPRDYEDRSTIIPMNQLVVGRSYLLEGEV-KSIDFPPGKKKSFAALLQDDFGKVT 86 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH-YIFHNSQDVNFPLIEAVYS 161 L F Y + L + G ++ + G+++ + + HP + + + A+Y Sbjct: 87 LRF-YHIYKGLTDRIKPGARLRIFGEVRVGARGLELYHPEIQVIQRHTALPKTQLTAIYP 145 Query: 162 LPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF-- 218 GL+ ++ + +AL LPE + + + + EA + IH P + Sbjct: 146 STEGLTQPKLREYVRQALEHHSDALPELLPA---KYSNGYELKEALHYIHEPPIDANMVQ 202 Query: 219 --EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI-AQKILRNIPFSPTK 275 + + PA++RL ++EL+A QI+LL R+ + ++I P K+ A+++L +PF T Sbjct: 203 LNQGSHPAQQRLIFEELVAHQISLL-TRRAYIRQIAAPRFSSSKVLAKRLLDALPFQMTN 261 Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 +Q+ K+IL D+ Q MLR++QGDVG+GKTLVA +A A+EA Q +MAP ILA+ Sbjct: 262 AQKRVSKEILHDLKQDQPMLRLVQGDVGAGKTLVAAVAACHALEAEWQVALMAPTEILAE 321 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 QHY K++ + I V ++G R A + I G + +++GTHALFQ+++++ KL Sbjct: 322 QHYLNFKRWFEPLGIKVAWLSGKQKGKARTLAEQEIKEGHSQLVVGTHALFQNNVEFSKL 381 Query: 396 ILVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452 LVI+DEQHRFGV QRL L K PH L+MTATPIPRTL +++ GD+D S I E P Sbjct: 382 GLVIIDEQHRFGVDQRLALRNKGVDQFTPHQLVMTATPIPRTLAMSAYGDLDTSIIDELP 441 Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-------ESNFRSVVE 505 GR PI+TV IP++R +EV++R+ EGK+AYW+C +E+ + E+ F+ + E Sbjct: 442 PGRTPIQTVTIPLDRREEVLQRIASNCREGKQAYWVCTLVEQSETLDAQAAEATFQEIKE 501 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 RF L ++ ++HG+M +K++VM +FK+ +LLIATTVIEVG+DV +ASI++I Sbjct: 502 RFPDL------NVGLVHGKMKADEKQAVMQAFKDNQSQLLIATTVIEVGVDVPNASIMVI 555 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625 ENAE GL+QLHQLRGRVGRG S C LLY PLS+N RLS+L+ + DGF+IAE+DL Sbjct: 556 ENAERLGLSQLHQLRGRVGRGATASFCALLYKTPLSQNGQERLSILRESNDGFVIAEKDL 615 Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671 + R GE+LG KQ+G F +A+ E D LL A A+ +L P Sbjct: 616 EIRGPGELLGTKQTGDMGFRVARLERDDHLLTQAHYVAEQLLKDYP 661 >gi|153947523|ref|YP_001399038.1| ATP-dependent DNA helicase RecG [Yersinia pseudotuberculosis IP 31758] gi|152959018|gb|ABS46479.1| ATP-dependent DNA helicase RecG [Yersinia pseudotuberculosis IP 31758] Length = 693 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 262/676 (38%), Positives = 393/676 (58%), Gaps = 26/676 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLST GVG + L+KI ET DLL + P + DR +I ++ VT Sbjct: 10 PLSTLSGVGASQAGKLAKI-----GLET-IQDLLLHLPLRYEDRTRLYRIGDLLPGLSVT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + S +RR ++DG+G +TL FF M KN G+ + G+ K+ Sbjct: 64 VEGEVLR-SDISFGRRRMMTCQISDGSGVLTLRFFNFNAAM-KNSLSVGKHVIAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLP--VLP 186 N ++HP Y H +++ L E+ VY G+ +K+I +AL+ L V+ Sbjct: 122 GNNGPEIIHPEYRVHG-ENIGVELQESLTPVYPTTEGIRQATLRKLIDQALAMLDTCVIA 180 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALLL 242 E + +L +S S+ EA + +H P + D E PA+ RL +ELLA +++L Sbjct: 181 ELLPIEL--SRSLISLPEAIHTLHRPPADIQLADLEQGKHPAQRRLIMEELLAHNLSMLA 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R + +P+ E ++ Q+ L +PF+PT++Q+ + +I +DM+Q M+R++QGDV Sbjct: 239 VRAGAQSYRALPLMAEEQLKQRFLAALPFTPTQAQQRVVAEIERDMTQSFPMMRLIQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+ G Q +MAP +LA+QH +++ + V + G Sbjct: 299 GSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHATTFRQWLEPLGFSVGWLAGKQKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R E +A GQ ++IGTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 359 ARLAQQEAVASGQVSMVIGTHAMFQEQVQFSGLALVIIDEQHRFGVHQRLALWEKGEEQG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R +VI+R+K Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDVIQRVKNA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L EG++AYW+C IEE + ++ L + ++HGRM +K+++M + Sbjct: 479 CLEEGRQAYWVCTLIEESELLEAQAAEVTCEELKIALPEIKVGLVHGRMKGPEKQAIMLA 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK G +LL+ATTVIEVG+DV +AS++II+N E GLAQLHQLRGRVGRG S C+LLY Sbjct: 539 FKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAVASHCVLLY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PLSK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G +F +A +++ Sbjct: 599 KTPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKVADLLRDQAMI 658 Query: 657 EIARKDAKHILTQDPD 672 ++ A+H+ Q P+ Sbjct: 659 PEVQRVARHLHQQYPE 674 >gi|317494701|ref|ZP_07953113.1| ATP-dependent DNA helicase RecG [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917303|gb|EFV38650.1| ATP-dependent DNA helicase RecG [Enterobacteriaceae bacterium 9_2_54FAA] Length = 693 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 258/675 (38%), Positives = 386/675 (57%), Gaps = 26/675 (3%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L++ GVG + L+KI G N DLL + P + DR I ++ T+ Sbjct: 11 LTSLAGVGASQAGKLAKI---GLEN---IQDLLLHLPLRYEDRTRLYAIKDLLPGLFATV 64 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G + + + +RR ++DGTG +T+ FF M KN G+ + G+IK+ Sbjct: 65 EGEVLR-TDISFGRRRMMTSQISDGTGMLTMRFFNFNAAM-KNSLSPGKHVLAYGEIKRG 122 Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187 ++HP Y + N L EA VY G+ +K+ +ALS L +P E Sbjct: 123 NLGAEIIHPEYKIQGETE-NVELQEALTPVYPTTEGIRQATLRKLTDQALSLLDTVPIAE 181 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNP---RKAKDFE-WTSPARERLAYDELLAGQIALLLM 243 + +L ++ S+ +A ++H P + D E PA+ RL +ELLA +++L + Sbjct: 182 LLPDEL--RRGLMSLPDALRMLHRPPPHMQLADLEHGKHPAQRRLILEELLAHNLSMLAV 239 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 R + + ++ + ++ +L ++PF PT +QE + DI DM++ M+R++QGDVG Sbjct: 240 RAGAQSHKALSLSADDRLKNLMLASLPFKPTAAQERVVADIEADMAKPVPMMRLVQGDVG 299 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKTLVA +A + G Q +MAP +LA+QH +++ + + V + G Sbjct: 300 SGKTLVAALAALRTIAHGKQVALMAPTELLAEQHANNFRQWFEPLGLKVGWLAGKQKGKA 359 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420 R+ +E IA G+ +I+GTHA+FQD +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 360 RQTQMEAIASGEVDMIVGTHAIFQDQVQFSGLALVIIDEQHRFGVHQRLALWEKGEEQGF 419 Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP +R ++IER+K Sbjct: 420 HPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDSRRTDIIERVKNAC 479 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 L EG++AYW+C IEE + ++ L +A++HGRM +K+ VM +F Sbjct: 480 LKEGRQAYWVCTLIEESEMLEAQAAEATAEELKLLLPEIKVALVHGRMKAAEKQEVMRAF 539 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 K G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLY Sbjct: 540 KAGETQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 599 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PLS+ + RL VL+++ DGF+IA+ DL+ R GE+LG KQ+G +F +A +L+ Sbjct: 600 TPLSQTAQKRLQVLRDSNDGFVIAQRDLEIRGPGELLGTKQTGSAEFKVADLLRDQALIP 659 Query: 658 IARKDAKHILTQDPD 672 ++ A+HI P+ Sbjct: 660 EVQRIARHIHQNYPE 674 >gi|22124025|ref|NP_667448.1| ATP-dependent DNA helicase RecG [Yersinia pestis KIM 10] gi|45439902|ref|NP_991441.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Microtus str. 91001] gi|51594391|ref|YP_068582.1| ATP-dependent DNA helicase RecG [Yersinia pseudotuberculosis IP 32953] gi|108809497|ref|YP_653413.1| ATP-dependent DNA helicase RecG [Yersinia pestis Antiqua] gi|108813974|ref|YP_649741.1| ATP-dependent DNA helicase RecG [Yersinia pestis Nepal516] gi|145601109|ref|YP_001165185.1| ATP-dependent DNA helicase RecG [Yersinia pestis Pestoides F] gi|150260900|ref|ZP_01917628.1| ATP-dependent DNA helicase [Yersinia pestis CA88-4125] gi|162419548|ref|YP_001604682.1| ATP-dependent DNA helicase RecG [Yersinia pestis Angola] gi|165926091|ref|ZP_02221923.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Orientalis str. F1991016] gi|165936250|ref|ZP_02224819.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Orientalis str. IP275] gi|166011481|ref|ZP_02232379.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Antiqua str. E1979001] gi|166213734|ref|ZP_02239769.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Antiqua str. B42003004] gi|167402096|ref|ZP_02307573.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419330|ref|ZP_02311083.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426678|ref|ZP_02318431.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468212|ref|ZP_02332916.1| ATP-dependent DNA helicase RecG [Yersinia pestis FV-1] gi|170026387|ref|YP_001722892.1| ATP-dependent DNA helicase RecG [Yersinia pseudotuberculosis YPIII] gi|186893378|ref|YP_001870490.1| ATP-dependent DNA helicase RecG [Yersinia pseudotuberculosis PB1/+] gi|218927257|ref|YP_002345132.1| ATP-dependent DNA helicase RecG [Yersinia pestis CO92] gi|229836147|ref|ZP_04456315.1| ATP-dependent DNA helicase [Yersinia pestis Pestoides A] gi|229839885|ref|ZP_04460044.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229841967|ref|ZP_04462122.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str. India 195] gi|229904504|ref|ZP_04519615.1| ATP-dependent DNA helicase [Yersinia pestis Nepal516] gi|270488504|ref|ZP_06205578.1| ATP-dependent DNA helicase RecG [Yersinia pestis KIM D27] gi|294502144|ref|YP_003566206.1| ATP-dependent DNA helicase [Yersinia pestis Z176003] gi|21956768|gb|AAM83699.1|AE013610_11 DNA helicase [Yersinia pestis KIM 10] gi|45434757|gb|AAS60318.1| ATP-dependent DNA helicase [Yersinia pestis biovar Microtus str. 91001] gi|51587673|emb|CAH19273.1| ATP-dependent DNA helicase [Yersinia pseudotuberculosis IP 32953] gi|108777622|gb|ABG20141.1| ATP-dependent DNA helicase RecG [Yersinia pestis Nepal516] gi|108781410|gb|ABG15468.1| ATP-dependent DNA helicase RecG [Yersinia pestis Antiqua] gi|115345868|emb|CAL18726.1| ATP-dependent DNA helicase [Yersinia pestis CO92] gi|145212805|gb|ABP42212.1| ATP-dependent DNA helicase RecG [Yersinia pestis Pestoides F] gi|149290308|gb|EDM40385.1| ATP-dependent DNA helicase [Yersinia pestis CA88-4125] gi|162352363|gb|ABX86311.1| ATP-dependent DNA helicase RecG [Yersinia pestis Angola] gi|165915864|gb|EDR34472.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Orientalis str. IP275] gi|165921951|gb|EDR39128.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Orientalis str. F1991016] gi|165989627|gb|EDR41928.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Antiqua str. E1979001] gi|166205136|gb|EDR49616.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Antiqua str. B42003004] gi|166963324|gb|EDR59345.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048471|gb|EDR59879.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054367|gb|EDR64184.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752921|gb|ACA70439.1| ATP-dependent DNA helicase RecG [Yersinia pseudotuberculosis YPIII] gi|186696404|gb|ACC87033.1| ATP-dependent DNA helicase RecG [Yersinia pseudotuberculosis PB1/+] gi|229678622|gb|EEO74727.1| ATP-dependent DNA helicase [Yersinia pestis Nepal516] gi|229690277|gb|EEO82331.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str. India 195] gi|229696251|gb|EEO86298.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706595|gb|EEO92601.1| ATP-dependent DNA helicase [Yersinia pestis Pestoides A] gi|262360223|gb|ACY56944.1| ATP-dependent DNA helicase [Yersinia pestis D106004] gi|262364169|gb|ACY60726.1| ATP-dependent DNA helicase [Yersinia pestis D182038] gi|270337008|gb|EFA47785.1| ATP-dependent DNA helicase RecG [Yersinia pestis KIM D27] gi|294352603|gb|ADE62944.1| ATP-dependent DNA helicase [Yersinia pestis Z176003] gi|320013390|gb|ADV96961.1| ATP-dependent DNA helicase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 693 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 262/676 (38%), Positives = 393/676 (58%), Gaps = 26/676 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLST GVG + L+KI ET DLL + P + DR +I ++ VT Sbjct: 10 PLSTLSGVGASQAGKLAKI-----GLET-IQDLLLHLPLRYEDRTRLYRIGDLLPGLSVT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + S +RR ++DG+G +TL FF M KN G+ + G+ K+ Sbjct: 64 VEGEVLR-SDISFGRRRMMTCQISDGSGVLTLRFFNFNAAM-KNSLSVGKHVIAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLP--VLP 186 N ++HP Y H +++ L E+ VY G+ +K+I +AL+ L V+ Sbjct: 122 GNNGPEIIHPEYRVHG-ENIGVELQESLTPVYPTTEGIRQATLRKLIDQALAMLDTCVIA 180 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALLL 242 E + +L +S S+ EA + +H P + D E PA+ RL +ELLA +++L Sbjct: 181 ELLPIEL--SRSLISLPEAIHTLHRPPADIQLADLEQGKHPAQRRLIMEELLAHNLSMLA 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R + +P+ E ++ Q+ L +PF+PT++Q+ + +I +DM+Q M+R++QGDV Sbjct: 239 VRAGAQSYRALPLMAEEQLKQRFLAALPFTPTQAQQRVVAEIERDMTQSFPMMRLIQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+ G Q +MAP +LA+QH +++ + V + G Sbjct: 299 GSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHATTFRQWLEPLGFSVGWLAGKQKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R E +A GQ ++IGTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 359 ARLAQQEAVASGQVSMVIGTHAMFQEQVQFSGLALVIIDEQHRFGVHQRLTLWEKGEEQG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R +VI+R+K Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDVIQRVKNA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L EG++AYW+C IEE + ++ L + ++HGRM +K+++M + Sbjct: 479 CLEEGRQAYWVCTLIEESELLEAQAAEVTCEELKIALPEIKVGLVHGRMKGPEKQAIMLA 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK G +LL+ATTVIEVG+DV +AS++II+N E GLAQLHQLRGRVGRG S C+LLY Sbjct: 539 FKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAVASHCVLLY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PLSK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G +F +A +++ Sbjct: 599 KTPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKVADLLRDQAMI 658 Query: 657 EIARKDAKHILTQDPD 672 ++ A+H+ Q P+ Sbjct: 659 PEVQRVARHLHQQYPE 674 >gi|330957275|gb|EGH57535.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. maculicola str. ES4326] Length = 691 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 253/680 (37%), Positives = 392/680 (57%), Gaps = 30/680 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 ++ +GVG+ + K+ G N D+LF+ P + DR I + + I Sbjct: 9 VTALKGVGEAMA---EKLARVGLEN---LQDVLFHLPLRYQDRTRIVPIGALRPGQDAVI 62 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G +S + + KRR + L DGTG ++L FY + K G + G+ + Sbjct: 63 EGVVS-GADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120 Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187 + + + HP Y + D P+ + +Y GL+ +++ ++L+ L LP+ Sbjct: 121 ASGLEIYHPEY-RAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIAL 240 W+ ++L + + +A +H+P D + W A+ RLA++ELL Q++ Sbjct: 180 WLPEELARDYQLAPLDDAIRYLHHPPADADVDELALGHHW---AQHRLAFEELLTHQLSQ 236 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 +R+ + + + V K+ ++ L N+ F+PT +Q+ K++ D+SQ MLR++QG Sbjct: 237 QRLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQG 296 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA +A A+EAG Q +MAP ILA+QHY +++ + + V + G + Sbjct: 297 DVGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLK 356 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 R +LE+IA G +++GTHALFQD +Q+ L LVI+DEQHRFGVQQRL L +K Sbjct: 357 GKARVASLEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVG 415 Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PH L+MTATPIPRTL +++ D+D S + E P GR P+ TV++ +R EV+ER++ Sbjct: 416 GLMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVR 475 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +EG++AYW+C IEE +E ++ + L + +IHGRM +K ++M Sbjct: 476 AACAEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGEVRVGLIHGRMKPAEKAAIMA 535 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK G +LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG +S C+LL Sbjct: 536 EFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLL 595 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 YHPPLS+ RL +++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A L Sbjct: 596 YHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADL 655 Query: 656 LEIARKDAKHILTQDPDLTS 675 L R A+ +L + P S Sbjct: 656 LPAVRDAAQALLERWPQHVS 675 >gi|226953855|ref|ZP_03824319.1| ATP-dependent DNA helicase [Acinetobacter sp. ATCC 27244] gi|226835338|gb|EEH67721.1| ATP-dependent DNA helicase [Acinetobacter sp. ATCC 27244] Length = 681 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 258/655 (39%), Positives = 389/655 (59%), Gaps = 47/655 (7%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLLF+ P + DR ++++ R + G + + F K++ LL D G++T Sbjct: 28 DLLFHLPRDYEDRSTIIPMNQLMVGRSYLLEGEV-RSIDFPPGKKKSLAALLQDDFGKVT 86 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHP--HYIFHNSQDVNFPL----I 156 L F Y + L + G ++ + G+++ + + HP I ++ PL + Sbjct: 87 LRF-YHIYKGLTDRIQVGNRLRIFGEVRVGARGLELYHPEIQVILQHT-----PLPKTQL 140 Query: 157 EAVYSLPTGLSVDLFKKIIVEALSR-----LPVLPEWIEKDLLQKKSFPSIAEAFNIIHN 211 A+Y GL+ ++ + +AL+ +LP + + + +A + IH Sbjct: 141 TAIYPSTEGLTQPKLREYVRQALAHHSDDLAELLPS-------KYSNGYELKQALHYIHE 193 Query: 212 PRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI-AQKIL 266 P + + + PA++RL ++EL+A QI+LL R+ + ++I P K+ A+++L Sbjct: 194 PPIDANMVQLNQGSHPAQQRLIFEELVAHQISLL-TRRAYIRQIAAPKFTSSKVLAKQLL 252 Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 +PF T +Q+ K+ILQD+ Q+ MLR++QGDVG+GKTLVA IA A+EA Q + Sbjct: 253 EALPFQMTNAQKRVSKEILQDLKQQQPMLRLVQGDVGAGKTLVAAIAACHALEAEWQVAL 312 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 MAP ILA+QHY K++ + I V ++G R +A + I G + +I+GTHALF Sbjct: 313 MAPTEILAEQHYLNFKRWFEPLGIDVAWLSGKQKGKARTQAEQHIREGHSQLIVGTHALF 372 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDI 443 QD++ + KL LVI+DEQHRFGV QRL L K PH L+MTATPIPRTL +++ GD+ Sbjct: 373 QDNVAFSKLGLVIIDEQHRFGVDQRLALRNKGADQFTPHQLVMTATPIPRTLAMSAYGDL 432 Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK------- 496 D S I E P GR PI+TV IP++R +EV++R+ EGK+AYW+C +E+ + Sbjct: 433 DTSVIDELPPGRTPIQTVTIPLDRREEVLQRIAQNCREGKQAYWVCTLVEQSETLDAQAA 492 Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556 E+ ++ + ERF L ++ ++HG+M +K++VM +FK+ +LLIATTVIEVG+D Sbjct: 493 EATYQEIKERFPDL------NVGLVHGKMKADEKQAVMQAFKDNQSQLLIATTVIEVGVD 546 Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616 V +ASI++IENAE GL+QLHQLRGRVGRG S C LLY PLS+N RLS+L+ + D Sbjct: 547 VPNASIMVIENAERLGLSQLHQLRGRVGRGATASFCALLYKTPLSQNGQERLSILRESND 606 Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671 GF+IAE+DL+ R GE+LG KQ+G F +A+ E D LL A A+ IL P Sbjct: 607 GFVIAEKDLEIRGPGELLGTKQTGDMGFRVARLERDDHLLTQAHYVAEQILKDYP 661 >gi|261211273|ref|ZP_05925562.1| ATP-dependent DNA helicase RecG [Vibrio sp. RC341] gi|260839774|gb|EEX66385.1| ATP-dependent DNA helicase RecG [Vibrio sp. RC341] Length = 692 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 264/675 (39%), Positives = 394/675 (58%), Gaps = 26/675 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL GVG K + L K+ DLLF+ P + DR I ++ Sbjct: 9 PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + KR+ + ++DG G +TL FF T +KN F EG+ + G+IK+ Sbjct: 63 VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFF-NFTAAMKNNFAEGKFVHAYGEIKR 120 Query: 132 LKNRIIMVHPHYIF---HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186 + ++HP Y F + DV P + VY GL + + +AL+ L + Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVE-PNLTPVYPTTEGLRQLTLRNLTDQALALLEKSAVQ 179 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242 E + L ++ ++A+A IIH P D + PA+ RL +ELLA +++L Sbjct: 180 ELLPSGLYDQQM--TLAQALKIIHRPSADIDLSQFEQGRHPAQVRLIMEELLAQNLSMLA 237 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R Q ++++ +P+ ++ Q++L +PFSPTK+Q+ + +I D+++ + M+R++QGDV Sbjct: 238 IRSQGQQDVALPLPPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLAKPHPMMRLVQGDV 297 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+E G Q +MAP +LA+QH ++ + I V + G + Sbjct: 298 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGK 357 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R L RIA G+ +++GTHALFQ+ + + L LVI+DEQHRFGV QRL+L +K Sbjct: 358 ARETELARIASGEVKMVVGTHALFQEHVSFDHLALVIIDEQHRFGVHQRLELREKGAKQG 417 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + DE++ER++ Sbjct: 418 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHA 477 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L+EGK+AYW+C I+E + ++ E L +I ++HGRM +K++VM + Sbjct: 478 CLNEGKQAYWVCTLIDESEVLEAQAAAETAEDLQRKLPEVNIGLVHGRMKAAEKQAVMQA 537 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FKN LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL+ Sbjct: 538 FKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF 597 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 H PLSK + RL VL+ + DGF+IA+ DL+ R GE+LG KQ+G+ F IA L+ Sbjct: 598 HAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLV 657 Query: 657 EIARKDAKHILTQDP 671 ++ A+HI + P Sbjct: 658 PQVQRIARHIHERYP 672 >gi|297581546|ref|ZP_06943469.1| ATP-dependent DNA helicase RecG [Vibrio cholerae RC385] gi|297534384|gb|EFH73222.1| ATP-dependent DNA helicase RecG [Vibrio cholerae RC385] Length = 692 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 263/675 (38%), Positives = 395/675 (58%), Gaps = 26/675 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL GVG K + L K+ DLLF+ P + DR I ++ Sbjct: 9 PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + KR+ + ++DG G +TL FF T +KN F EG+ + G+IK+ Sbjct: 63 VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFF-NFTAAMKNNFAEGKFVHAYGEIKR 120 Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186 + ++HP Y F + DV P + VY GL + + +AL+ L + Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVE-PNLTPVYPTTEGLRQLTLRNLTDQALALLDKSAVQ 179 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242 E + L ++ ++A+A IIH P D + PA+ RL +ELLA +++L Sbjct: 180 ELLPSGLYDQQM--TLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLA 237 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R Q ++++ +P+ ++ Q++L +PF+PTK+Q+ + +I D+ + + M+R++QGDV Sbjct: 238 IRSQGQQDVALPLASVHQLKQQLLAQLPFTPTKAQQRVVAEIEADLEKPHPMMRLVQGDV 297 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+E G Q +MAP +LA+QH ++ + I V + G + Sbjct: 298 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGK 357 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R L RIA G+ +++GTHALFQ+ + + L LVI+DEQHRFGV QRL+L +K Sbjct: 358 ARDTELARIASGEVKMVVGTHALFQEQVSFGHLALVIIDEQHRFGVHQRLELREKGAKQG 417 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP ++ DE++ER++ Sbjct: 418 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDSKRDEIVERIRHA 477 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L+EGK+AYW+C I+E + ++ E L +I ++HGRM +K++VM + Sbjct: 478 CLNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPDLNIGLVHGRMKPAEKQAVMQA 537 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FKN LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL+ Sbjct: 538 FKNNQLHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF 597 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 H PLSK + RL+VL+ + DGF+IA+ DL+ R GE+LG KQ+G+ F IA L+ Sbjct: 598 HAPLSKTAQKRLAVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLV 657 Query: 657 EIARKDAKHILTQDP 671 ++ A+HI + P Sbjct: 658 PQVQRIARHIHERYP 672 >gi|313199832|ref|YP_004038490.1| ATP-dependent DNA helicase recg [Methylovorus sp. MP688] gi|312439148|gb|ADQ83254.1| ATP-dependent DNA helicase RecG [Methylovorus sp. MP688] Length = 670 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 265/669 (39%), Positives = 379/669 (56%), Gaps = 36/669 (5%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLL + P ++D I ++ + G I H+ Q + R+ L D +G +T Sbjct: 15 DLLLHLPLRYVDETRVTPIRDLRLGEQAQVEGEII-HAEVQYKPRKALIARLQDASGILT 73 Query: 103 LLF--FY-RKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159 L F FY + LK EG ++ G+++ MVHP + V Sbjct: 74 LRFLNFYPSQIAALK----EGNRLRALGEVRNGFFGYEMVHPQCKPVREGAAVKQTLTPV 129 Query: 160 YSLPTGLSVDLFKKIIVEAL---SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216 Y GLS +K I AL S +LP + Q K++P ++ +H P Sbjct: 130 YPTTAGLSQPSLRKWIGRALETASHDELLP----AKVYQGKAWPDFQQSLLQLHYPPPDA 185 Query: 217 DF----EWTSPARERLAYDELLAGQIALLLMRKQF--KKEIGIP-INVEGKIAQKILRNI 269 D E T+PA +RLA+DELLA QI+ MRK + ++ +G P + K+ +L+++ Sbjct: 186 DQHALQEKTTPAWQRLAFDELLAQQIS---MRKHYARRRGLGAPAMPPSKKLVSALLKSL 242 Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T +Q+ DI D+ + M R+LQGDVGSGKT+VA +A A+E G QA IMAP Sbjct: 243 PFGLTAAQQRVFSDIQHDLGRSYPMQRLLQGDVGSGKTIVAAMAALQAIEHGWQAAIMAP 302 Query: 330 IGILAQQHYEFIKKYTQN-----TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384 ILA+QH+ + + QN + V + G+ + R +AL IA G+A ++IGTHA Sbjct: 303 TEILAEQHFNKLNTWLQNLAAGAAPVRVVWVAGSQGKKARAEALAAIASGEAQLVIGTHA 362 Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444 +FQD +Q+ +L LV+VDEQHRFGVQQRL L QK PH L+M+ATPIPRTL ++ D+D Sbjct: 363 VFQDQVQFARLGLVVVDEQHRFGVQQRLALRQKGAQPHQLMMSATPIPRTLSMSYFADLD 422 Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504 +S I E P GR P+ T ++ R +EV ER++ S+G++AYW+CP IEE + ++ V Sbjct: 423 VSVIDELPPGRTPVVTKLVSDARREEVFERVRAACSQGRQAYWVCPLIEESEALQLQTAV 482 Query: 505 ERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + +L E F + ++HGRM DK++VM +F LL+ATTVIEVG+DV +AS++ Sbjct: 483 DTHIALQEVFPELQVGLVHGRMKPADKQAVMQAFAANQIHLLVATTVIEVGVDVPNASLM 542 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623 +IE+AE GL+QLHQLRGRVGRG S+CILLY PLS+ + RL ++ + DGF IA+ Sbjct: 543 VIEHAERMGLSQLHQLRGRVGRGAASSACILLYQTPLSETARARLKIIYESSDGFEIAQA 602 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683 DL R GE +GI+QSG P IA E LLE A+ A +L + P Q Sbjct: 603 DLHLRGPGEFMGIRQSGTPMLKIADLERDAGLLEEAQAMADWLLQKHPQAAEAHLQR--- 659 Query: 684 LLYLYQYNE 692 +L+Q E Sbjct: 660 --WLHQAQE 666 >gi|68171581|ref|ZP_00544954.1| Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal [Ehrlichia chaffeensis str. Sapulpa] gi|67998991|gb|EAM85669.1| Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal [Ehrlichia chaffeensis str. Sapulpa] Length = 528 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 235/530 (44%), Positives = 334/530 (63%), Gaps = 9/530 (1%) Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221 L GL+ K++ ++ LP PEWI++ LL+ + S E+ IH+P E Sbjct: 2 LIRGLTSKRISKLVKLSVRLLPDFPEWIDEKLLRDNRWNSWKESLIKIHHP---DTLEAV 58 Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281 R RLAYDELL+ QI++ ++RK F + G+ I + IL +PF T+ Q+ I Sbjct: 59 HLHRARLAYDELLSHQISVKMVRK-FDYQQGVSIVSKQLYYNDILNKLPFKLTEGQKEVI 117 Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341 I + + +NRM+++L GDVGSGKT+VAL A+ +E GGQ MAP ILA+QHY +I Sbjct: 118 SQITKSQASENRMVKLLIGDVGSGKTVVALFAILNVIENGGQVAFMAPTEILAEQHYRWI 177 Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401 + + + VE++T + + K +++ G+ +++IGTHALFQD + + L L+I+D Sbjct: 178 RAILSDISVDVELLTSKVRKKQNIK--KKLQLGECNVVIGTHALFQDGVDFNNLNLIIID 235 Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461 EQ RFGV QR++L K+ VL MTATPIPRTL GDID ++ +KP R PI+T Sbjct: 236 EQQRFGVLQRMRLINKSNMADVLFMTATPIPRTLEQVVYGDIDCLRLKDKPHNRLPIQTS 295 Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521 I+ I R+ EVI +L++ L EG KAYWICP IE+ + + + +RF +L E F + +I Sbjct: 296 IVNIERLFEVIAKLQLALQEGNKAYWICPYIEDSELLDIAAAEKRFFTLQEVFGKDVGLI 355 Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581 H R+ I+K+ VM SF NG KLL+ATTVIEVG+D+ DA+IIIIENAE FGL+QLHQLRG Sbjct: 356 HSRLPKIEKDEVMMSFYNGNIKLLVATTVIEVGVDIPDATIIIIENAEQFGLSQLHQLRG 415 Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641 RVGR ++ S CILL+ LSK +Y +L +L+ +DGF IAE+DL R G++LGIKQSG+ Sbjct: 416 RVGRSDKSSFCILLHGNMLSKIAYKKLCILRKFQDGFYIAEQDLLLRGSGDVLGIKQSGL 475 Query: 642 PKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691 F A L+ IA + A IL D + T + G LL+++ Y+ Sbjct: 476 SNFKFADIYKDQGLISIAVEQAGAIL--DANKTEL-GDHFNQLLHMFGYD 522 >gi|310765944|gb|ADP10894.1| ATP-dependent DNA helicase RecG [Erwinia sp. Ejp617] Length = 693 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 255/679 (37%), Positives = 376/679 (55%), Gaps = 32/679 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+T GVG + L+K+ DLL + P + DR I+ + T Sbjct: 10 PLNTLSGVGASQATKLAKL------GLVTVQDLLLHLPLRYEDRTQLYAINNLLPGIYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + HS +RR + DGTG +TL FF M KN GR++T G+IK+ Sbjct: 64 VEGEVL-HSDISFGRRRMLTCQIGDGTGTLTLRFFNFNAGM-KNSLAAGRRVTAYGEIKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEALSRLP------ 183 + ++HP Y V + VYS G+ + + +AL+ L Sbjct: 122 GQRGAEIIHPEYKVQGEHSVTGLQETLTPVYSTTEGVRQATLRNLTDQALTLLDTCAIAE 181 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK----AKDFEWTSPARERLAYDELLAGQIA 239 +LP + L+ S+ +A +H P A T PA+ RL +ELLA ++ Sbjct: 182 LLPPQLSGGLI------SLPDALRTLHRPPPDIALADLDSGTHPAQRRLIMEELLAHNLS 235 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 +L +R ++ +P++ +++ ++L +PF PT +Q+ +++I D++ M+R++Q Sbjct: 236 MLAVRAGAQRYHALPMSPRHELSDRLLAALPFRPTAAQQRVVREIENDLAHDYPMMRLVQ 295 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKTLVA + + G Q +MAP +LA+QH +++ + V + G Sbjct: 296 GDVGSGKTLVAALTALNVIAWGKQVALMAPTELLAEQHANNFRQWFAPLGLEVGWLAGKQ 355 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R E IA GQ +I+GTHA+FQ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 356 KGKARLAQQEAIASGQVSMIVGTHAIFQQQVQFNGLALVIIDEQHRFGVHQRLALWEKGE 415 Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I R+ Sbjct: 416 EQGFHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRRADIITRV 475 Query: 476 K-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533 K SEG++AYW+C IEE + ++ + L +I ++HGRM +K++V Sbjct: 476 KDACGSEGRQAYWVCTLIEESELLEAQAAQATWEELQLALPELTIGLVHGRMKPAEKQAV 535 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M +FK G LLIATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+ Sbjct: 536 MQAFKQGEIHLLIATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCV 595 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 LLY PLSK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G +F +A Sbjct: 596 LLYKSPLSKTAQKRLQVLRDSNDGFVIAQCDLEIRGPGELLGTRQTGNAEFRVADLLRDQ 655 Query: 654 SLLEIARKDAKHILTQDPD 672 +L+ ++ A+HI P+ Sbjct: 656 ALIPEVQRVARHIHQHYPE 674 >gi|292486539|ref|YP_003529405.1| ATP-dependent DNA helicase RecG [Erwinia amylovora CFBP1430] gi|292897774|ref|YP_003537143.1| ATP-dependent DNA helicase [Erwinia amylovora ATCC 49946] gi|291197622|emb|CBJ44716.1| ATP-dependent DNA helicase [Erwinia amylovora ATCC 49946] gi|291551952|emb|CBA18989.1| ATP-dependent DNA helicase RecG [Erwinia amylovora CFBP1430] Length = 693 Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust. Identities = 253/679 (37%), Positives = 377/679 (55%), Gaps = 32/679 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+T GVG + L+K+ DLL + P + DR I+ + T Sbjct: 10 PLNTLSGVGASQATKLAKL------GLVTVQDLLLHLPLRYEDRTQLYAINNLQPGIYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + H +RR + DGTG +TL FF M KN GR++T G+IK+ Sbjct: 64 VAGEVL-HCDISFGRRRMLTCQITDGTGTVTLRFFNFNAGM-KNSLAVGRRVTAYGEIKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEALSRLP------ 183 + ++HP Y V + VYS G+ + + +AL+ L Sbjct: 122 GQRGAEIIHPEYKVQGEHSVTGLQETLTPVYSTTEGVRQATLRNLTDQALTLLDTCAIAE 181 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNP---RKAKDFE-WTSPARERLAYDELLAGQIA 239 +LP + L+ S+ +A +H P D + T PA+ RL +ELLA ++ Sbjct: 182 LLPPQLRGGLI------SLPDALRTLHRPPPDMALADLDSGTHPAQRRLIMEELLAHNLS 235 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 +L +R ++ +P++ +++ ++L +PF PT +Q+ +++I D++ M+R++Q Sbjct: 236 MLAVRAGAQRYHALPMSPRHQLSDRLLAALPFRPTAAQQRVVREIENDLAHDYPMMRLVQ 295 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKTLVA + + G Q +MAP +LA+QH +++ + V + G Sbjct: 296 GDVGSGKTLVAALTALNVIAWGKQVALMAPTELLAEQHANNFRQWFAPLGLEVGWLAGKQ 355 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R E IA G+ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 356 KGKARLAQQEAIASGRVSMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGE 415 Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I R+ Sbjct: 416 DQGFHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRRADIITRV 475 Query: 476 K-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533 K SEG++AYW+C IEE + ++ + L +I ++HGRM +K++V Sbjct: 476 KDACSSEGRQAYWVCTLIEESELLEAQAAQATWEELQLALPELTIGLVHGRMKPAEKQAV 535 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M +FK G LLIATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+ Sbjct: 536 MQAFKQGEIHLLIATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCV 595 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 LLY PLSK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G +F +A Sbjct: 596 LLYKSPLSKTAQKRLQVLRDSNDGFMIAQCDLEIRGPGELLGTRQTGNAEFRVADLLRDQ 655 Query: 654 SLLEIARKDAKHILTQDPD 672 +L+ ++ A+HI P+ Sbjct: 656 ALIPEVQRVARHIHQHYPE 674 >gi|153802204|ref|ZP_01956790.1| ATP-dependent DNA helicase RecG [Vibrio cholerae MZO-3] gi|153825548|ref|ZP_01978215.1| ATP-dependent DNA helicase RecG [Vibrio cholerae MZO-2] gi|124122278|gb|EAY41021.1| ATP-dependent DNA helicase RecG [Vibrio cholerae MZO-3] gi|149740833|gb|EDM54924.1| ATP-dependent DNA helicase RecG [Vibrio cholerae MZO-2] Length = 692 Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust. Identities = 264/675 (39%), Positives = 392/675 (58%), Gaps = 26/675 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL GVG K + L K+ DLLF+ P + DR I ++ Sbjct: 9 PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + KR+ + ++DG G +TL FF T +KN F EG+ + G+IK+ Sbjct: 63 VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFF-NFTAAMKNNFAEGKFVHAYGEIKR 120 Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186 + ++HP Y F + DV P + VY GL + + +AL+ L + Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVE-PNLTPVYPTTEGLRQLTLRNLTDQALALLEKSAVQ 179 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242 E + L ++ ++A+A IIH P D + PA+ RL +ELLA +++L Sbjct: 180 ELLPSGLYDQQM--TLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLA 237 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R Q ++++ +P+ ++ Q++L +PFSPTK+Q+ + +I D+ + + M+R++QGDV Sbjct: 238 IRSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDV 297 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+E G Q +MAP +LA+QH ++ + I V + G + Sbjct: 298 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGK 357 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R L RIA G+ +++GTHALFQ+ + + L LVI+DEQHRFGV QRL+L +K Sbjct: 358 ARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQG 417 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + DE++ER++ Sbjct: 418 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHA 477 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L+EGK+AYW+C I+E + ++ E L I ++HGRM +K++VM + Sbjct: 478 CLNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQA 537 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FKN LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL+ Sbjct: 538 FKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF 597 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 H PLSK + RL VL+ + DGF+IA+ DL+ R GE+LG KQ+G+ F IA L+ Sbjct: 598 HAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLV 657 Query: 657 EIARKDAKHILTQDP 671 ++ A+HI + P Sbjct: 658 PQVQRIARHIHERYP 672 >gi|229513632|ref|ZP_04403096.1| ATP-dependent DNA helicase RecG [Vibrio cholerae TMA 21] gi|254285900|ref|ZP_04960862.1| ATP-dependent DNA helicase RecG [Vibrio cholerae AM-19226] gi|150424082|gb|EDN16021.1| ATP-dependent DNA helicase RecG [Vibrio cholerae AM-19226] gi|229349509|gb|EEO14465.1| ATP-dependent DNA helicase RecG [Vibrio cholerae TMA 21] Length = 692 Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust. Identities = 264/675 (39%), Positives = 392/675 (58%), Gaps = 26/675 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL GVG K + L K+ DLLF+ P + DR I ++ Sbjct: 9 PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + KR+ + ++DG G +TL FF T +KN F EG+ + G+IK+ Sbjct: 63 VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFF-NFTAAMKNNFAEGKFVHAYGEIKR 120 Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186 + ++HP Y F + DV P + VY GL + + +AL+ L + Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVE-PNLTPVYPTTEGLRQLTLRNLTDQALALLEKSAVQ 179 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242 E + L ++ ++A+A IIH P D + PA+ RL +ELLA +++L Sbjct: 180 ELLPSGLYDQQM--TLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLA 237 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R Q ++++ +P+ ++ Q++L +PFSPTK+Q+ + +I D+ + + M+R++QGDV Sbjct: 238 IRSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDV 297 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+E G Q +MAP +LA+QH ++ + I V + G + Sbjct: 298 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHSLNFAQWLEPMGIQVGWLAGKLKGK 357 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R L RIA G+ +++GTHALFQ+ + + L LVI+DEQHRFGV QRL+L +K Sbjct: 358 ARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQG 417 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + DE++ER++ Sbjct: 418 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHA 477 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L+EGK+AYW+C I+E + ++ E L I ++HGRM +K++VM + Sbjct: 478 CLNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQA 537 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FKN LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL+ Sbjct: 538 FKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF 597 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 H PLSK + RL VL+ + DGF+IA+ DL+ R GE+LG KQ+G+ F IA L+ Sbjct: 598 HAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLV 657 Query: 657 EIARKDAKHILTQDP 671 ++ A+HI + P Sbjct: 658 PQVQRIARHIHERYP 672 >gi|262190096|ref|ZP_06048387.1| ATP-dependent DNA helicase RecG [Vibrio cholerae CT 5369-93] gi|262034026|gb|EEY52475.1| ATP-dependent DNA helicase RecG [Vibrio cholerae CT 5369-93] Length = 692 Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust. Identities = 263/675 (38%), Positives = 392/675 (58%), Gaps = 26/675 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL GVG K + L K+ DLLF+ P + DR I ++ Sbjct: 9 PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + KR+ + ++DG G +TL FF T +KN F EG+ + G+IK+ Sbjct: 63 VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFF-NFTAAMKNNFAEGKFVHAYGEIKR 120 Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186 + ++HP Y F + DV P + VY GL + + +AL+ L + Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVE-PNLTPVYPTTEGLRQLTLRNLTDQALALLEKSAVQ 179 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242 E + L ++ ++A+A IIH P D + PA+ RL +ELLA +++L Sbjct: 180 ELLPSGLYDQQM--TLAQALKIIHRPSAEIDLRLFEQGRHPAQVRLIMEELLAQNLSMLA 237 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R Q ++++ +P+ ++ Q++L +PF+PTK+Q+ + +I D+ + + M+R++QGDV Sbjct: 238 IRSQGQQDVALPLAPVHQLKQQLLAQLPFTPTKAQQRVVAEIEADLEKPHPMMRLVQGDV 297 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+E G Q +MAP +LA+QH ++ + I V + G + Sbjct: 298 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHSLNFAQWLEPMGIQVGWLAGKLKGK 357 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R L RIA G+ +++GTHALFQ+ + + L LVI+DEQHRFGV QRL+L +K Sbjct: 358 ARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQG 417 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + DE++ER++ Sbjct: 418 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHA 477 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L+EGK+AYW+C I+E + ++ E L I ++HGRM +K++VM + Sbjct: 478 CLNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQTVMQA 537 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FKN LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL+ Sbjct: 538 FKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF 597 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 H PLSK + RL VL+ + DGF+IA+ DL+ R GE+LG KQ+G+ F IA L+ Sbjct: 598 HAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLV 657 Query: 657 EIARKDAKHILTQDP 671 ++ A+HI + P Sbjct: 658 PQVQRIARHIHERYP 672 >gi|301156627|emb|CBW16098.1| ATP-dependent DNA helicase [Haemophilus parainfluenzae T3T1] Length = 693 Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust. Identities = 258/678 (38%), Positives = 396/678 (58%), Gaps = 26/678 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+T GVG S LS++ G N DLLF+ P + DR I+++ E+ T Sbjct: 10 PLTTLSGVGAAISDKLSRL---GIHN---LQDLLFHLPIRYEDRTRITPIADLRPEQYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G + Q +R + L+DGT +I L FF M KN F G ++ G+IK+ Sbjct: 64 IEGVV-QTCEVAFGRRPILTVSLSDGTSKIMLRFFNFNVGM-KNSFQIGTRVKAFGEIKR 121 Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + + HP Y I N+ V + +YS GL + +K+ +AL+ +L + Sbjct: 122 GRFMAEIHHPEYQIIRDNAPLVLEETLTPIYSTTEGLKQNSLRKLTDQALA---LLDKIQ 178 Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLL 242 ++L + P S+ +A +H P + PA++RL ++ELLA +A+ Sbjct: 179 LTEILPNEFNPHPFSLKDAIRFLHRPPPDISLDILEKGQHPAQQRLIFEELLAHNLAMQK 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R ++ + +P++ + + Q+ L ++PF PT +Q + DI QD+++ M+R++QGDV Sbjct: 239 VRLGTQQFLALPLHYQTNLKQRFLASLPFQPTNAQNRVVADIEQDLAKDYPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A++ G Q +MAP ILA+QH +++ + I V + G + Sbjct: 299 GSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFRRWLEPFGIEVGWLAGKVKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R+ LE+I G +++GTHALFQ+ +++ L LVI+DEQHRFGV QRL L +K Sbjct: 359 ARQTELEKIKSGAVQMVVGTHALFQEEVEFADLALVIIDEQHRFGVHQRLMLREKGEKAG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T D+D S I E P GR PI TV+I R DE++ R+K Sbjct: 419 FYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVISEERRDEIVARVKNA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 ++E ++AYW+C I+E + ++ + L + I ++HGRM +K+ +M + Sbjct: 479 CINEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLKIGLVHGRMKPQEKQDIMAA 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK+ LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S C+L+Y Sbjct: 539 FKSAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PPL K S RL VL++++DGF+I+E+DL+ R GE+LG KQ+G+ +F +A ++ Sbjct: 599 KPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAEFKVANLMRDRKMI 658 Query: 657 EIARKDAKHILTQDPDLT 674 + AK ++ + PD+ Sbjct: 659 PTVQHYAKALIVKYPDVA 676 >gi|258620423|ref|ZP_05715461.1| ATP-dependent DNA helicase RecG [Vibrio mimicus VM573] gi|262170362|ref|ZP_06038040.1| ATP-dependent DNA helicase RecG [Vibrio mimicus MB-451] gi|258587302|gb|EEW12013.1| ATP-dependent DNA helicase RecG [Vibrio mimicus VM573] gi|261891438|gb|EEY37424.1| ATP-dependent DNA helicase RecG [Vibrio mimicus MB-451] Length = 692 Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust. Identities = 263/675 (38%), Positives = 393/675 (58%), Gaps = 26/675 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL GVG K + L K+ + DLLF+ P + DR I ++ Sbjct: 9 PLCELSGVGAKVAEKLEKV------SLHTVQDLLFHLPLRYEDRTRVYPIVQVHHGLWAA 62 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + KR+ + ++DG G +TL FF T +KN F EG+ + G+IK+ Sbjct: 63 VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFF-NFTAAMKNNFAEGKFVHAYGEIKR 120 Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186 + ++HP Y F + DV P + VY GL + + +AL+ L + Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVE-PNLTPVYPTTEGLRQLTLRNLTDQALALLEKSAVQ 179 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242 E + L ++ ++A+A IIH P D + PA+ RL +ELLA +++L Sbjct: 180 ELLPSGLYDQQM--TLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLA 237 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R Q ++++ +P+ ++ Q++L +PFSPTK+Q+ + +I D+ + + M+R++QGDV Sbjct: 238 IRSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDV 297 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+E G Q +MAP +LA+QH ++ + I V + G + Sbjct: 298 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGK 357 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R L RIA G+ +++GTHALFQ+ + + L LVI+DEQHRFGV QRL+L +K Sbjct: 358 ARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQG 417 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + D+++ER++ Sbjct: 418 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERIRHA 477 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L+EGK+AYW+C I+E + ++ E L I ++HGRM +K++VM + Sbjct: 478 CLNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQA 537 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FKN LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL+ Sbjct: 538 FKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF 597 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 H PLSK + RL VL+ + DGF+IA+ DL+ R GE+LG KQ+G+ F IA L+ Sbjct: 598 HAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLI 657 Query: 657 EIARKDAKHILTQDP 671 ++ A+HI + P Sbjct: 658 PQVQRIARHIHERYP 672 >gi|153828335|ref|ZP_01981002.1| ATP-dependent DNA helicase RecG [Vibrio cholerae 623-39] gi|148876165|gb|EDL74300.1| ATP-dependent DNA helicase RecG [Vibrio cholerae 623-39] Length = 692 Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust. Identities = 264/675 (39%), Positives = 392/675 (58%), Gaps = 26/675 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL GVG K + L K+ DLLF+ P + DR I ++ Sbjct: 9 PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + KR+ + ++DG G +TL FF T +KN F EG+ + G+IK+ Sbjct: 63 VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFF-NFTAAMKNNFAEGKFVHAYGEIKR 120 Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186 + ++HP Y F + DV P + VY GL + + +AL+ L + Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVE-PNLTPVYPTTEGLRQLTLRNLTDQALALLEKTAVQ 179 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242 E + L ++ ++A+A IIH P D + PA+ RL +ELLA +++L Sbjct: 180 ELLPSGLYDQQM--TLAQALKIIHRPSTDIDLRLFEQGRHPAQVRLIMEELLAQNLSMLA 237 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R Q ++++ +P+ ++ Q++L +PFSPTK+Q+ + +I D+ + + M+R++QGDV Sbjct: 238 IRSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDV 297 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+E G Q +MAP +LA+QH ++ + I V + G + Sbjct: 298 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHSLNFAQWLEPMGIRVGWLAGKLKGK 357 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R L RIA G+ +++GTHALFQ+ + + L LVI+DEQHRFGV QRL+L +K Sbjct: 358 ARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQG 417 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + DE++ER++ Sbjct: 418 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHA 477 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L+EGK+AYW+C I+E + ++ E L I ++HGRM +K++VM + Sbjct: 478 CLNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQA 537 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FKN LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL+ Sbjct: 538 FKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF 597 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 H PLSK + RL VL+ + DGF+IA+ DL+ R GE+LG KQ+G+ F IA L+ Sbjct: 598 HAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLV 657 Query: 657 EIARKDAKHILTQDP 671 ++ A+HI + P Sbjct: 658 PQVQRIARHIHERYP 672 >gi|238789530|ref|ZP_04633314.1| ATP-dependent DNA helicase recG [Yersinia frederiksenii ATCC 33641] gi|238722283|gb|EEQ13939.1| ATP-dependent DNA helicase recG [Yersinia frederiksenii ATCC 33641] Length = 693 Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust. Identities = 261/676 (38%), Positives = 391/676 (57%), Gaps = 26/676 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLST GVG + L+K+ ET DLL + P + DR +I ++ VT Sbjct: 10 PLSTLSGVGASQAGKLAKM-----GLET-IQDLLLHLPLRYEDRTRLYRIGDLLPGLSVT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + S +RR + DGTG +TL FF M KN G+ + G+ K+ Sbjct: 64 VEGEVIR-SDISFGRRRMMTSQITDGTGVLTLRFFNFNAAM-KNSLSPGKHVIAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLP--VLP 186 ++HP Y H +++ L E+ VY G+ +K+I +AL+ L V+ Sbjct: 122 GNTGPEIIHPEYRVHG-ENIGVELQESLTPVYPTTEGIRQATLRKLIDQALAMLDTCVIA 180 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALLL 242 E + +L +S S+ EA + +H P + D E PA+ RL +ELLA +++L Sbjct: 181 ELLPIEL--SRSLISLPEAIHTLHRPPADIQLFDLEQGKHPAQRRLIMEELLAHNLSMLA 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R + +P+ E ++ Q+ L +PF+PT++Q+ + +I QDM+ M+R++QGDV Sbjct: 239 VRAGAQSYRALPLLAEEQLKQRFLAALPFTPTRAQQRVVAEIEQDMTHNFPMMRLIQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+ G Q +MAP +LA+QH +++ + + V + G Sbjct: 299 GSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANTFRQWLEPLGLEVGWLAGKQKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R E +A GQ +++GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 359 ARLAQQEAVASGQVSMVVGTHAMFQEQVQFSGLALVIIDEQHRFGVHQRLALWEKGEEQG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R +VI+R+K Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDVIQRVKNA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L EG++AYW+C IEE + ++ L + ++HGRM +K++VM + Sbjct: 479 CLEEGRQAYWVCTLIEESELLEAQAAEVTCEELRVALPEIKVGLVHGRMKGPEKQAVMQA 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK G +LL+ATTVIEVG+DV +AS++II+N E GLAQLHQLRGRVGRG S C+LLY Sbjct: 539 FKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAVASHCVLLY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PLSK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G +F +A +++ Sbjct: 599 KTPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKVADLLRDQAMI 658 Query: 657 EIARKDAKHILTQDPD 672 ++ A+H+ Q P+ Sbjct: 659 PEVQRVARHLHQQYPE 674 >gi|15642705|ref|NP_232338.1| ATP-dependent DNA helicase RecG [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586640|ref|ZP_01676425.1| ATP-dependent DNA helicase RecG [Vibrio cholerae 2740-80] gi|121726729|ref|ZP_01679954.1| ATP-dependent DNA helicase RecG [Vibrio cholerae V52] gi|147674684|ref|YP_001218199.1| ATP-dependent DNA helicase RecG [Vibrio cholerae O395] gi|153817408|ref|ZP_01970075.1| ATP-dependent DNA helicase RecG [Vibrio cholerae NCTC 8457] gi|153821266|ref|ZP_01973933.1| ATP-dependent DNA helicase RecG [Vibrio cholerae B33] gi|227082825|ref|YP_002811376.1| ATP-dependent DNA helicase RecG [Vibrio cholerae M66-2] gi|229507241|ref|ZP_04396746.1| ATP-dependent DNA helicase RecG [Vibrio cholerae BX 330286] gi|229509838|ref|ZP_04399319.1| ATP-dependent DNA helicase RecG [Vibrio cholerae B33] gi|229516960|ref|ZP_04406406.1| ATP-dependent DNA helicase RecG [Vibrio cholerae RC9] gi|229606747|ref|YP_002877395.1| ATP-dependent DNA helicase RecG [Vibrio cholerae MJ-1236] gi|254851248|ref|ZP_05240598.1| ATP-dependent DNA helicase RecG [Vibrio cholerae MO10] gi|255744331|ref|ZP_05418283.1| ATP-dependent DNA helicase RecG [Vibrio cholera CIRS 101] gi|262158559|ref|ZP_06029674.1| ATP-dependent DNA helicase RecG [Vibrio cholerae INDRE 91/1] gi|262170047|ref|ZP_06037736.1| ATP-dependent DNA helicase RecG [Vibrio cholerae RC27] gi|298500474|ref|ZP_07010278.1| ATP-dependent DNA helicase RecG [Vibrio cholerae MAK 757] gi|9657308|gb|AAF95851.1| ATP-dependent DNA helicase RecG [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549199|gb|EAX59232.1| ATP-dependent DNA helicase RecG [Vibrio cholerae 2740-80] gi|121630890|gb|EAX63272.1| ATP-dependent DNA helicase RecG [Vibrio cholerae V52] gi|126511994|gb|EAZ74588.1| ATP-dependent DNA helicase RecG [Vibrio cholerae NCTC 8457] gi|126521198|gb|EAZ78421.1| ATP-dependent DNA helicase RecG [Vibrio cholerae B33] gi|146316567|gb|ABQ21106.1| ATP-dependent DNA helicase RecG [Vibrio cholerae O395] gi|227010713|gb|ACP06925.1| ATP-dependent DNA helicase RecG [Vibrio cholerae M66-2] gi|227014597|gb|ACP10807.1| ATP-dependent DNA helicase RecG [Vibrio cholerae O395] gi|229346023|gb|EEO10995.1| ATP-dependent DNA helicase RecG [Vibrio cholerae RC9] gi|229353312|gb|EEO18251.1| ATP-dependent DNA helicase RecG [Vibrio cholerae B33] gi|229354746|gb|EEO19667.1| ATP-dependent DNA helicase RecG [Vibrio cholerae BX 330286] gi|229369402|gb|ACQ59825.1| ATP-dependent DNA helicase RecG [Vibrio cholerae MJ-1236] gi|254846953|gb|EET25367.1| ATP-dependent DNA helicase RecG [Vibrio cholerae MO10] gi|255737856|gb|EET93249.1| ATP-dependent DNA helicase RecG [Vibrio cholera CIRS 101] gi|262021455|gb|EEY40167.1| ATP-dependent DNA helicase RecG [Vibrio cholerae RC27] gi|262029720|gb|EEY48369.1| ATP-dependent DNA helicase RecG [Vibrio cholerae INDRE 91/1] gi|297540643|gb|EFH76700.1| ATP-dependent DNA helicase RecG [Vibrio cholerae MAK 757] Length = 692 Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust. Identities = 264/675 (39%), Positives = 392/675 (58%), Gaps = 26/675 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL GVG K + L K+ DLLF+ P + DR I ++ Sbjct: 9 PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + KR+ + ++DG G +TL FF T +KN F EG+ + G+IK+ Sbjct: 63 VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFF-NFTAAMKNNFAEGKFVHAYGEIKR 120 Query: 132 LKNRIIMVHPHYIFHN---SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186 + ++HP Y F + DV P + VY GL + + +AL L + Sbjct: 121 GNQGLEIIHPDYKFFTPAQTPDVE-PNLTPVYPTTEGLRQLTLRNLTDQALVLLEKSAVQ 179 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242 E + L ++ ++A+A IIH P D + PA+ RL +ELLA +++L Sbjct: 180 ELLPSGLYDQQM--TLAQALKIIHRPSADIDLRLFEQGRHPAQIRLIMEELLAQNLSMLA 237 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R Q ++++ +P+ ++ Q++L +PFSPTK+Q+ + +I D+++ + M+R++QGDV Sbjct: 238 IRSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLAKPHPMMRLVQGDV 297 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+E G Q +MAP +LA+QH ++ + I V + G + Sbjct: 298 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGK 357 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R L RIA G+ +++GTHALFQ+ + + L LVI+DEQHRFGV QRL+L +K Sbjct: 358 ARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQG 417 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + DE++ER++ Sbjct: 418 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHA 477 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L+EGK+AYW+C I+E + ++ E L I ++HGRM +K++VM + Sbjct: 478 CLNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQA 537 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FKN LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL+ Sbjct: 538 FKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF 597 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 H PLSK + RL VL+ + DGF+IA+ DL+ R GE+LG KQ+G+ F IA L+ Sbjct: 598 HAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLV 657 Query: 657 EIARKDAKHILTQDP 671 ++ A+HI + P Sbjct: 658 PQVQRIARHIHERYP 672 >gi|157828759|ref|YP_001495001.1| ATP-dependent DNA helicase RecG [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933486|ref|YP_001650275.1| ATP-dependent DNA helicase [Rickettsia rickettsii str. Iowa] gi|157801240|gb|ABV76493.1| ATP-dependent DNA helicase RecG [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908573|gb|ABY72869.1| ATP-dependent DNA helicase [Rickettsia rickettsii str. Iowa] Length = 713 Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust. Identities = 259/641 (40%), Positives = 373/641 (58%), Gaps = 47/641 (7%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLLFY P S+ ++ P ++E+ + I+ T + + + + +P KI ++ TG + Sbjct: 37 DLLFYLPVSYQNKILSPNLTEVRDGDIIQ-TEIVVESINLPKKSSQPLKITASNDTGSLL 95 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAV 159 L+FF++ + N G ++GK++ + + + HP +I VN L IE + Sbjct: 96 LVFFHKPPPFIFNKLQVGTSHIISGKVQFFDHYLQIAHPEFI------VNPKLAKEIEPI 149 Query: 160 YSLPTGLS-----------VDLFKK---------------IIVEALSRLPVLPEWIEKDL 193 YSL LS +++F++ II++ L L V E + Sbjct: 150 YSLTYLLSNKKLYSYIIKAIEIFEEKCKSIEDKEVKDYLDIILQNLQMLHVFHHCEEACM 209 Query: 194 LQKKSFPSIAEAFNI-IHNPRKA-KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251 K+S S ++ N + P K ++ + + A+++LA EL+A QI+LL +R Q + Sbjct: 210 PTKQS--SNVKSINARLPQPLKGLRNDDLYTNAKKQLAAKELIANQISLLNVRTQISRRQ 267 Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G I IL + F T Q+ I++I D S K M+R+LQGDVGSGKTLVAL Sbjct: 268 GNIYPKAVSIQANILNELGFELTSYQKQVIEEIECDQSDKIEMMRLLQGDVGSGKTLVAL 327 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 + M V G QA +MAP +LA QHYEF K +NT I V ++TG + A R+ + ++ Sbjct: 328 LTMVNVVATGFQATLMAPTDLLANQHYEFFVKALKNTNIRVGLLTGKILGAARKNIMIQL 387 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 +G+ I++GTHALFQ+ + + KL +++DEQHRFGVQQRL L K P VL+MTATPI Sbjct: 388 DNGEIDILVGTHALFQEKVSFKKLGYIVIDEQHRFGVQQRLNLINKGVNPDVLVMTATPI 447 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491 PR+L LT GD+ ISK+ KP R PI T + +N+I+ +I + L G++ YWICP Sbjct: 448 PRSLALTMFGDMTISKLMGKPKSRLPIATNTMSVNKIEHIIVAINKKLIAGERVYWICPL 507 Query: 492 IEE------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545 IE+ +++S V+ RFNS+ + IIHG+M + K+ +M FK G K+L Sbjct: 508 IEQGGKETPEEDSLLMDVMNRFNSIDNIYPGYTGIIHGKMKNEQKDQIMKQFKEGEIKIL 567 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LSKNS 604 +ATTVIEVGID+ +A++IIIENAE FGLAQLHQLRGRVGRG S CILLY+P L K + Sbjct: 568 VATTVIEVGIDIPEATLIIIENAEQFGLAQLHQLRGRVGRGSLQSYCILLYNPKRLRKVA 627 Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645 R ++K T DGF IAE+DLK R GEILG+KQSG F Sbjct: 628 RGRFEIMKQTNDGFYIAEQDLKLRGSGEILGVKQSGEIAFF 668 >gi|298484810|ref|ZP_07002910.1| ATP-dependent DNA helicase RecG [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160664|gb|EFI01685.1| ATP-dependent DNA helicase RecG [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 691 Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust. Identities = 253/680 (37%), Positives = 392/680 (57%), Gaps = 30/680 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 ++ +GVG+ + L+++ ET D+LF+ P + DR I + + I Sbjct: 9 VTALKGVGEAMAEKLARV-----GLET-LQDVLFHLPLRYQDRTRVVPIGALRPGQDAVI 62 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G +S + + KRR + L DGTG ++L FY + K G + G+ + Sbjct: 63 EGVVS-GADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120 Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187 + + + HP Y + D P+ + +Y GL+ +++ ++L+ L LP+ Sbjct: 121 ASGLEIYHPEY-RAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIAL 240 W+ +L + + +A +H+P D E W A+ RLA++ELL Q++ Sbjct: 180 WLPDELARDYQLAPLDDAIRYLHHPPADADVEELALGHHW---AQHRLAFEELLTHQLSQ 236 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 +R+ + + + V K+ ++ L N+ F+PT +Q+ K++ D+SQ MLR++QG Sbjct: 237 QRLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQG 296 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA +A A+EAG Q +MAP ILA+QHY +++ + + V + G + Sbjct: 297 DVGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLK 356 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 R +LE+IA G +++GTHALFQD +Q+ L LVI+DEQHRFGVQQRL L +K Sbjct: 357 GKARATSLEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVG 415 Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PH L+MTATPIPRTL +++ D+D S + E P GR P+ TV++ +R EV+ER++ Sbjct: 416 GLMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVR 475 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +EG++AYW+C I E +E ++ + L + +IHGRM +K ++M Sbjct: 476 AACAEGRQAYWVCTLIVESEELTCKAAETTYEELSSALGEVRVGLIHGRMKPAEKAAIMA 535 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK G +LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG +S C+LL Sbjct: 536 EFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLL 595 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 YHPPLS+ RL +++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A L Sbjct: 596 YHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADL 655 Query: 656 LEIARKDAKHILTQDPDLTS 675 L R A+ +L + P S Sbjct: 656 LPAVRDAAQAMLERWPQHVS 675 >gi|54307408|ref|YP_128428.1| ATP-dependent DNA helicase RecG [Photobacterium profundum SS9] gi|46911828|emb|CAG18626.1| putative ATP-dependent DNA helicase RecG [Photobacterium profundum SS9] Length = 697 Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust. Identities = 256/678 (37%), Positives = 395/678 (58%), Gaps = 28/678 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L+ GVG K + L K+ T DLLF+ P + DR I++ + + + Sbjct: 11 LTELSGVGAKMAEKLEKV------GLTSVQDLLFHLPLRYEDRTRIWPIAQAMPGQHIAV 64 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G + +SS KRR + + D +G TL FF M +N EG+++ G+IK+ Sbjct: 65 QGEVL-NSSITFGKRRMLTVRIADDSGSATLRFFNFNAAM-QNSLAEGKQVKAFGEIKRG 122 Query: 133 KNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPEW 188 K + ++HP Y +F S + + VY GL + + +ALS L + E Sbjct: 123 KFGLEIIHPDYSVFAESVSLTGEETLTPVYPTTEGLRQLTLRNLTDQALSLLDKAAVTEL 182 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMR 244 + + L ++ ++A+A +++H P + PA+ RL +ELLA +++L +R Sbjct: 183 LPEGLYDRQM--TMAQALHVMHRPTPDVSLDQLEAGKHPAQHRLILEELLAQNLSMLAVR 240 Query: 245 KQFKKEIGIPI----NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 + ++ P+ N + +K+L ++PFSPT +Q+ + DI D+ + M+R++QG Sbjct: 241 SKSQQHSAWPLAACDNPADSLKEKLLASLPFSPTNAQQRVVADIEADLIKPLPMMRLVQG 300 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKTLVA +A A++ G Q +MAP +LA+QH + ++ I V + G + Sbjct: 301 DVGSGKTLVAALAALQAIQHGFQVALMAPTELLAEQHAQNFAQWLNPMDIQVGWMAGKLK 360 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 R L RI +G+A +++GTHALFQ+ + + L LVI+DEQHRFGV QRL+L +K Sbjct: 361 GKARETELARIENGEAKMVVGTHALFQNHVSFKNLALVIIDEQHRFGVHQRLELREKGAN 420 Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PH L+MTATPIPRTL +T+ D++ S I E P GR P++TV +P +R ++ER++ Sbjct: 421 EGHYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPVQTVALPDSRRAAIVERIR 480 Query: 477 -VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 L+EG++AYW+C I+E + ++ + N L ++ +IHGRM +K+ +M Sbjct: 481 TACLNEGRQAYWVCTLIDESEVLEAQAASDTANDLTAQLPELNVGLIHGRMKAAEKQEIM 540 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 FK G +LL+ATTVIEVG+DV +AS+++IEN E GLAQLHQLRGRVGRG+ S C+L Sbjct: 541 RRFKAGELQLLVATTVIEVGVDVPNASLMVIENPERLGLAQLHQLRGRVGRGKVASHCVL 600 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 LYH PLSK + RL VL+++ DGF+IA+ DL+ R GE+LG KQ+G+ F IA Sbjct: 601 LYHAPLSKTAQKRLGVLRDSSDGFVIAQRDLEIRGPGELLGTKQTGIADFKIADLVRDQH 660 Query: 655 LLEIARKDAKHILTQDPD 672 L+ +K A++I Q P+ Sbjct: 661 LIPQVQKLARYIHEQHPN 678 >gi|88861118|ref|ZP_01135752.1| ATP-dependent DNA helicase recG [Pseudoalteromonas tunicata D2] gi|88816840|gb|EAR26661.1| ATP-dependent DNA helicase recG [Pseudoalteromonas tunicata D2] Length = 694 Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust. Identities = 265/694 (38%), Positives = 386/694 (55%), Gaps = 42/694 (6%) Query: 4 SFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE 63 S N + +GVG K ++ L+K+ N DLLF+ P + DR I E Sbjct: 3 SLPNLALYSVDQLKGVGPKLAVRLAKL------NIRTVQDLLFHLPLRYEDRTRVYPICE 56 Query: 64 ISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123 + VT+ G I +H KR+ +NDGT +TL FF T KN G+ I Sbjct: 57 LQAHSHVTVIGEI-EHCQVTFGKRKMMICQINDGTARLTLRFF-SFTAAQKNNLVAGKVI 114 Query: 124 TVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGL-----------SVDL 170 G++++ + M HP Y + + + VY GL +V+L Sbjct: 115 RCFGEVRRGQVGYEMAHPEYSLVEQYQTIITDETLTPVYPTTEGLKQLSLRNLCDQAVEL 174 Query: 171 FKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS----PARE 226 KK +E L LP ++ L S+ +A +H P E + PA++ Sbjct: 175 LKKYDIEEL-----LPAQLQPAQL------SLKQALLFLHQPTPDVCTEQLALGLHPAQQ 223 Query: 227 RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQ 286 RLA +ELLA ++LL +R++ + + + + + Q+ L +PF PT +Q+ + +I Q Sbjct: 224 RLALEELLAQNLSLLKLRQKAQAHLAVQLQSNHALEQQFLAQLPFKPTHAQQRVVTEIKQ 283 Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346 D++ + M+R++QGDVGSGKTLVA +A A+ G Q +MAP ILA+QHY K + Sbjct: 284 DLTLAHPMMRLVQGDVGSGKTLVAALAALTAIGQGYQVALMAPTEILAEQHYLSFKNWFS 343 Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 I V + G R L +A+GQA +IIGTHALFQ +Q++ L L+I+DEQHRF Sbjct: 344 TLDIEVAWLAGKTKGKEREATLANLANGQAQMIIGTHALFQTQVQFFNLALIIIDEQHRF 403 Query: 407 GVQQRLKLTQKA----TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462 GV QRL+L +K PH L+MTATPIPRTL +T+ D++ S I E P GR PI TV Sbjct: 404 GVHQRLELREKGKFGDCYPHQLVMTATPIPRTLAMTAYADLETSIIDELPPGRTPITTVA 463 Query: 463 IPINRIDEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAI 520 +P R +E+IER++ + ++ YW+C I+E + ++ + L I + Sbjct: 464 LPDTRREEIIERVRNACTQQQRQVYWVCTLIDESEVLQCQAAEDNAKELTVLLPELKIGL 523 Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580 +HGRM +K+++M+ FK G +L+ATTVIEVG+DV +AS+IIIEN E GLAQLHQLR Sbjct: 524 VHGRMKPAEKQAIMEQFKQGEINVLVATTVIEVGVDVPNASLIIIENPERLGLAQLHQLR 583 Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 GRVGRG S C+LLYH PLS + RL+VL+ + DGF+IA++DL+ R GE+LG KQ+G Sbjct: 584 GRVGRGAIASHCLLLYHAPLSHTAKKRLAVLRESNDGFVIAQKDLEIRGPGEVLGSKQTG 643 Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 + +F IA +L+ R A +L PDL+ Sbjct: 644 LAEFKIADLVRDQALVRDVRPMAIFLLNNHPDLS 677 >gi|312170607|emb|CBX78870.1| ATP-dependent DNA helicase RecG [Erwinia amylovora ATCC BAA-2158] Length = 693 Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust. Identities = 253/679 (37%), Positives = 377/679 (55%), Gaps = 32/679 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+T GVG + L+K+ DLL + P + DR I+ + T Sbjct: 10 PLNTLSGVGASQATKLAKL------GLVTVQDLLLHLPLRYEDRTQLYAINNLLPGIYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + H +RR + DGTG +TL FF M KN GR++T G+IK+ Sbjct: 64 VAGEVL-HCDISFGRRRMLTCQITDGTGTVTLRFFNFNAGM-KNSLAVGRRVTAYGEIKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEALSRL------P 183 + ++HP Y V + VYS G+ + + +AL+ L Sbjct: 122 GQRGAEIIHPEYKVQGEHSVTGLQETLTPVYSTTEGVRQATLRNLTDQALTLLDTCAIAE 181 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNP---RKAKDFE-WTSPARERLAYDELLAGQIA 239 +LP + L+ S+ +A +H P D + T PA+ RL +ELLA ++ Sbjct: 182 LLPPQLSGGLI------SLPDALRTLHRPPPDMALADLDSGTHPAQRRLIMEELLAHNLS 235 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 +L +R ++ +P++ +++ ++L +PF PT +Q+ +++I D++ M+R++Q Sbjct: 236 MLAVRAGAQRYHALPMSPRHQLSDRLLAALPFRPTAAQQRVVREIENDLAHDYPMMRLVQ 295 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKTLVA + + G Q +MAP +LA+QH +++ + V + G Sbjct: 296 GDVGSGKTLVAALTALNVIAWGKQVALMAPTELLAEQHANNFRQWFAPLGLEVGWLAGKQ 355 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R E IA G+ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 356 KGKARLAQQEAIASGRVSMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGE 415 Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I R+ Sbjct: 416 EQGFHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRRADIITRV 475 Query: 476 K-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533 K SEG++AYW+C IEE + ++ + L +I ++HGRM +K++V Sbjct: 476 KDACSSEGRQAYWVCTLIEESELLEAQAAQATWEELQLALPELTIGLVHGRMKPAEKQAV 535 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M +FK G LLIATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+ Sbjct: 536 MQAFKQGEIHLLIATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCV 595 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 LLY PLSK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G +F +A Sbjct: 596 LLYKSPLSKTAQKRLQVLRDSNDGFMIAQCDLEIRGPGELLGTRQTGNAEFRVADLLRDQ 655 Query: 654 SLLEIARKDAKHILTQDPD 672 +L+ ++ A+HI P+ Sbjct: 656 ALIPEVQRVARHIHQHYPE 674 >gi|153212584|ref|ZP_01948331.1| ATP-dependent DNA helicase RecG [Vibrio cholerae 1587] gi|124116455|gb|EAY35275.1| ATP-dependent DNA helicase RecG [Vibrio cholerae 1587] Length = 692 Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust. Identities = 264/675 (39%), Positives = 391/675 (57%), Gaps = 26/675 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL GVG K + L K+ DLLF+ P + DR I ++ Sbjct: 9 PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + KR+ + ++DG G +TL FF T +KN F EG+ + G+IK+ Sbjct: 63 VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFF-NFTAAMKNNFAEGKFVHAYGEIKR 120 Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186 + ++HP Y F + DV P + VY GL + + +AL L + Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVE-PNLTPVYPTTEGLRQLTLRNLTDQALVLLEKSAVQ 179 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242 E + L ++ ++A+A IIH P D + PA+ RL +ELLA +++L Sbjct: 180 ELLPSGLYDQQM--TLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLA 237 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R Q ++++ +P+ ++ Q++L +PFSPTK+Q+ + +I D+ + + M+R++QGDV Sbjct: 238 IRSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDV 297 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+E G Q +MAP +LA+QH ++ + I V + G + Sbjct: 298 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHSLNFAQWLEPMGIQVGWLAGKLKGK 357 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R L RIA G+ +++GTHALFQ+ + + L LVI+DEQHRFGV QRL+L +K Sbjct: 358 ARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQG 417 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + DE++ER++ Sbjct: 418 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHA 477 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L+EGK+AYW+C I+E + ++ E L I ++HGRM +K++VM + Sbjct: 478 CLNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQA 537 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FKN LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL+ Sbjct: 538 FKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF 597 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 H PLSK + RL VL+ + DGF+IA+ DL+ R GE+LG KQ+G+ F IA L+ Sbjct: 598 HAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLV 657 Query: 657 EIARKDAKHILTQDP 671 ++ A+HI + P Sbjct: 658 PQVQRIARHIHERYP 672 >gi|261492178|ref|ZP_05988748.1| helicase RecG [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261312158|gb|EEY13291.1| helicase RecG [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 693 Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust. Identities = 265/682 (38%), Positives = 388/682 (56%), Gaps = 34/682 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+ GVG S S+I N DLLF+ P + DR I+++ E T Sbjct: 10 PLTALSGVGAAISEKSSRI-GINNVQ-----DLLFHLPMRYEDRTRITPIADVRPESFAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I GY+ Q + Q KR + L+D T +I L FF M KN G ++ G+IK+ Sbjct: 64 IEGYV-QLTEVQFGKRPILSVTLSDSTSKIMLKFFNFNAGM-KNSLATGVRVKAFGEIKR 121 Query: 132 LKNRIIMVHPHY-IFHNSQDVNFPLIEA-----VYSLPTGLSVDLFKKIIVEALSRLPVL 185 + + HP Y I ++Q PL+ A +YS GL +K+ +AL+ +L Sbjct: 122 GRFMAEIHHPEYQIIRDNQ----PLVLAETLTPIYSTTEGLKQASLRKLTEQALA---LL 174 Query: 186 PEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQI 238 + +LL + P S+ EA ++H P E PA++RL ++ELLA + Sbjct: 175 EKVKVAELLPDEYNPHKYSLKEALQLLHRPPPTISAEVLEKGDHPAQKRLIFEELLAHNL 234 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 A+ +R K++ + + I Q+ L ++PF PT +Q DI QD+++ + M+R++ Sbjct: 235 AMQQLRLGVKQQYAEALTYQTDIKQRFLDSLPFKPTHAQSRVTADIEQDLAKPHPMMRLV 294 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKTLVA +A A++ G Q +MAP ILA+QH + I V + G Sbjct: 295 QGDVGSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLNPFGIEVGWLAGK 354 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + R LE I +G +IIGTHALFQD+++++ L LVI+DEQHRFGV QRL L +K Sbjct: 355 VKGKARTAQLEAIKNGDVQMIIGTHALFQDNVEFHHLALVIIDEQHRFGVHQRLTLREKG 414 Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 PH L+MTATPIPRTL +T D+D S I E P GR PI TV+I +R E+++R Sbjct: 415 AKENNYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVISEDRRAEIVQR 474 Query: 475 L-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532 + + E ++AYW+C I+E + ++ L I ++HGR+ +K++ Sbjct: 475 VYQACKQEHRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRLKPQEKQA 534 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +M FK LL+ATTVIEVG+DV +AS++IIEN+E GLAQLHQLRGRVGRG S C Sbjct: 535 IMAEFKAANLDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHC 594 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +L+Y PPL K S RL V+++++DGF IAE+DL+ R GEILG KQ+GM +F +A Sbjct: 595 VLMYKPPLGKISSKRLQVMRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVADLMRD 654 Query: 653 DSLLEIARKDAKHILTQDPDLT 674 ++ + ++ AK I++++ L Sbjct: 655 RKMIPLVQRYAKQIISENQPLA 676 >gi|270159344|ref|ZP_06188000.1| ATP-dependent DNA helicase RecG [Legionella longbeachae D-4968] gi|289165836|ref|YP_003455974.1| ATP-dependent DNA helicase RecG [Legionella longbeachae NSW150] gi|269987683|gb|EEZ93938.1| ATP-dependent DNA helicase RecG [Legionella longbeachae D-4968] gi|288859009|emb|CBJ12937.1| ATP-dependent DNA helicase RecG [Legionella longbeachae NSW150] Length = 690 Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust. Identities = 254/648 (39%), Positives = 375/648 (57%), Gaps = 24/648 (3%) Query: 15 TFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITG 74 + G+G + +K+ CG + R DLLF+ P + DR + ++ I G Sbjct: 8 SLTGIGPTLA---AKLAKCG-IHSVR--DLLFHLPYRYQDRTRITPLQDLQPNTWCVIAG 61 Query: 75 YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134 + + + + KR + D TG I L FF+ +KN+ I G++++ N Sbjct: 62 EVCK-TEIKPGKRAMLHCYVQDKTGVIKLQFFHFNKNQIKNLN-NSVMIHAFGEVREFNN 119 Query: 135 RIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALS----RLPVLPEW 188 M HP Y +F + + + +Y GLS +++++ AL L L EW Sbjct: 120 TWTMTHPEYQLFEDENQCHVHETLTPIYPSTQGLSQTRLRQLVLVALKSSEHELQQL-EW 178 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLMR 244 + L+ +F + EA ++HNP + PA +RLA+DELLA ++++ R Sbjct: 179 MSDAELKANNFYHLGEAIRLLHNPPPDISLQALESGQHPALKRLAFDELLAQRLSMQFAR 238 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 + P+ + + + L +PF+ T++Q+ ++I D+ QK MLR++QGDVG+ Sbjct: 239 ESRSTLHATPLPRDHHLNNRFLSALPFTLTQAQQRVAEEINLDLMQKKPMLRLVQGDVGA 298 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKT++A +A A+ G Q MAP +L++QH ++ + I + +TG M + R Sbjct: 299 GKTIIAALAALQAIANGKQVAFMAPTDLLSEQHASNFMRWLEPLGIKILRLTGKMKASER 358 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----A 420 R AL +A +IIGTHALFQ+++ + L LVI+DEQHRFGV+QRL L QK Sbjct: 359 RHALSALADNSCQLIIGTHALFQEAVHFSHLGLVIIDEQHRFGVEQRLLLQQKGQHEQRV 418 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 PH LLMTATPIPRTL ++ L +DIS I E P GR PI T ++ N+ + VIERL V LS Sbjct: 419 PHQLLMTATPIPRTLSMSYLAHLDISIIDELPPGRIPITTAVLNQNKRETVIERLLVALS 478 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKN 539 G++ YW+C IEE ++ + E ++L E ++ I +IHGRM ++KE+ M +FKN Sbjct: 479 TGRQIYWVCTLIEESEKLQCMAATETAHTLQEQLPAARIGLIHGRMKPLEKEATMAAFKN 538 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S C+LLY P Sbjct: 539 GEINLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGNTQSHCLLLYQSP 598 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 LS+ S RL +++ T DGF+IAE+DL+ R GEILG KQ+G +F IA Sbjct: 599 LSQQSTERLKIMRATNDGFIIAEKDLELRGAGEILGTKQTGYRQFKIA 646 >gi|258626032|ref|ZP_05720888.1| ATP-dependent DNA helicase RecG [Vibrio mimicus VM603] gi|258581683|gb|EEW06576.1| ATP-dependent DNA helicase RecG [Vibrio mimicus VM603] Length = 692 Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust. Identities = 263/675 (38%), Positives = 391/675 (57%), Gaps = 26/675 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL GVG K + L K+ DLLF+ P + DR I ++ Sbjct: 9 PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQVHHGLWAA 62 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + KR+ + ++DG G +TL FF T +KN F EG+ + G+IK+ Sbjct: 63 VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFF-NFTAAMKNNFAEGKFVHAYGEIKR 120 Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186 + ++HP Y F DV P + VY GL + + +AL+ L + Sbjct: 121 GNQGLEIIHPDYKFFAPAQKPDVE-PNLTPVYPTTEGLRQLTLRNLTDQALALLEKSAVQ 179 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242 E + L ++ ++A+A IIH P D + PA+ RL +ELLA +++L Sbjct: 180 ELLPSGLYDQQM--TLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLA 237 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R Q ++++ +P+ ++ Q++L +PFSPTK+Q+ + +I D+ + + M+R++QGDV Sbjct: 238 IRSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDV 297 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+E G Q +MAP +LA+QH ++ + I V + G + Sbjct: 298 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGK 357 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R L RIA G+ +++GTHALFQ+ + + L LVI+DEQHRFGV QRL+L +K Sbjct: 358 ARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQG 417 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + D+++ER++ Sbjct: 418 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERIRNA 477 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L+EGK+AYW+C I+E + ++ E L I ++HGRM +K++VM + Sbjct: 478 CLNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQA 537 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FKN LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL+ Sbjct: 538 FKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF 597 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 H PLSK + RL VL+ + DGF+IA+ DL+ R GE+LG KQ+G+ F IA L+ Sbjct: 598 HAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLI 657 Query: 657 EIARKDAKHILTQDP 671 ++ A+HI + P Sbjct: 658 PQVQRIARHIHERYP 672 >gi|149189235|ref|ZP_01867522.1| ATP-dependent DNA helicase RecG [Vibrio shilonii AK1] gi|148836989|gb|EDL53939.1| ATP-dependent DNA helicase RecG [Vibrio shilonii AK1] Length = 692 Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust. Identities = 263/671 (39%), Positives = 388/671 (57%), Gaps = 28/671 (4%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS 77 GVG K + L+K+ DLLF+ P + DR I + ++ G + Sbjct: 15 GVGAKVAEKLAKV------GLHSVQDLLFHLPHRYEDRTRIYPIVRLHPGLWGSVQGKVM 68 Query: 78 QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137 S +R+ + ++DG G ITL FF T +KN F EGR I G++K+ + + Sbjct: 69 S-SDVAFGRRKMLTVKVSDGNGTITLRFF-NFTAAMKNNFSEGRLIVAYGEVKRGNHGLE 126 Query: 138 MVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRL--PVLPEWIEK 191 ++HP Y F P +E VY GL + + +AL + + E + Sbjct: 127 IIHPEYKFQTEGKA--PKLEQTLTPVYPTTEGLRQLTLRNLTDQALELMDKAAVDELLPS 184 Query: 192 DLLQKKSFPSIAEAFNIIHNPRKA---KDF-EWTSPARERLAYDELLAGQIALLLMRKQF 247 L ++ ++AEA + IH P DF E PA++RL +EL+A +++L +R + Sbjct: 185 GLYNQQI--TLAEALHTIHRPPPTINLDDFDEGKHPAQQRLIIEELMAQNLSMLAVRSKG 242 Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 +++ I + K+ ++L +PFSPT +Q +++I D+++ M+R++QGDVGSGKT Sbjct: 243 QQDTAIGLAPVEKLKDQLLEQLPFSPTGAQSRVVQEIETDLAKPIPMMRLVQGDVGSGKT 302 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 LVA +A A+E G Q +MAP +LA+QH + + I V ++G + Sbjct: 303 LVAALAAVRAIEHGYQVAMMAPTELLAEQHAINFAGWFEAMGIQVGWLSGKQKGKTKEAE 362 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHV 423 L RIA G+A +++GTHALFQ+S+ ++ L LVI+DEQHRFGV QRL+L +K PH Sbjct: 363 LARIASGEAQMVVGTHALFQESVDFHNLALVIIDEQHRFGVHQRLELREKGAKQGFYPHQ 422 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VVLSEG 482 L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + D++IER+K L EG Sbjct: 423 LIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIIERVKNACLHEG 482 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541 K+AYW+C I+E + ++ E L I ++HGRM +K+ VM FKN Sbjct: 483 KQAYWVCTLIDESEVLEAQAAAETAEDLQRKLPDLKIGLVHGRMKPAEKQQVMKQFKNNE 542 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C+LLYH PLS Sbjct: 543 LHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHSPLS 602 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 K + RL VL+ + DGF+IA++DL+ R GE+LG KQ+G+ F IA L+ ++ Sbjct: 603 KTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIADLVRDQRLVPEVQR 662 Query: 662 DAKHILTQDPD 672 A+H+ Q P+ Sbjct: 663 IARHVHEQYPE 673 >gi|330977359|gb|EGH77309.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 691 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 253/680 (37%), Positives = 392/680 (57%), Gaps = 30/680 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 ++ +GVG+ + L+K+ ET D+LF+ P + DR I + + I Sbjct: 9 VTALKGVGEAMAEKLAKV-----GLET-LQDVLFHLPLRYQDRTRIVPIGALRPGQDAVI 62 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G +S + + KRR + L DGTG ++L FY + K G + G+ + Sbjct: 63 EGVVS-GADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120 Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187 + + + HP Y + D P+ + +Y GL+ +++ ++L+ L LP+ Sbjct: 121 ASGLAIYHPEY-RAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIAL 240 W+ ++L + + +A +H+P D E W A+ RLA++ELL Q++ Sbjct: 180 WLPEELARDYQLAPLDDAIRYLHHPPADADVEELALGHHW---AQHRLAFEELLTHQLSQ 236 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 +R+ + + + V K+ ++ L N+ F+PT +Q+ K++ D+SQ MLR++QG Sbjct: 237 QRLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQG 296 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 VGSGKT+VA +A A+EAG Q +MAP ILA+QHY +++ + + V + G + Sbjct: 297 GVGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLK 356 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 R +LE+IA G +++GTHALFQD +Q+ L LVI+DEQHRFGVQQRL L +K Sbjct: 357 GKARVASLEQIAGGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVG 415 Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PH L+MT TPIPRTL +++ D+D S + E P GR P+ TV++ +R EV+ER++ Sbjct: 416 GLMCPHQLIMTPTPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVR 475 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +EG++AYW+C IEE +E ++ + L + +IHGRM +K ++M Sbjct: 476 AACAEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGDVRVGLIHGRMKPAEKAAIMA 535 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK G +LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG +S C+LL Sbjct: 536 EFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLL 595 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 YHPPLS+ RL +++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A L Sbjct: 596 YHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADL 655 Query: 656 LEIARKDAKHILTQDPDLTS 675 L R A+ +L + P S Sbjct: 656 LPAVRDAAQALLERWPQHVS 675 >gi|229527364|ref|ZP_04416756.1| ATP-dependent DNA helicase RecG [Vibrio cholerae 12129(1)] gi|229334996|gb|EEO00481.1| ATP-dependent DNA helicase RecG [Vibrio cholerae 12129(1)] gi|327485181|gb|AEA79588.1| ATP-dependent DNA helicase RecG [Vibrio cholerae LMA3894-4] Length = 692 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 262/675 (38%), Positives = 392/675 (58%), Gaps = 26/675 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL GVG K + L K+ DLLF+ P + DR I ++ Sbjct: 9 PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + KR+ + ++DG G +TL FF T +KN F EG+ + G+IK+ Sbjct: 63 VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFF-NFTAAMKNNFAEGKFVHAYGEIKR 120 Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186 + ++HP Y F + D+ P + VY GL + + +AL+ L + Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDIE-PNLTPVYPTTEGLRQLTLRNLTNQALALLDKSAVQ 179 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242 E + L ++ ++A+A IIH P D + PA+ RL +ELLA +++L Sbjct: 180 ELLPSGLYDQQM--TLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLA 237 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R Q ++++ +P+ ++ Q++L +PFSPTK+Q+ + +I D+ + + M+R++QGDV Sbjct: 238 IRSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDV 297 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+E G Q +MAP +LA+QH ++ + I V + G + Sbjct: 298 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGK 357 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R L RIA G+ +++GTHALFQ+ + + L LVI+DEQHRFGV QRL+L +K Sbjct: 358 ARETQLARIASGEVKMVVGTHALFQEQVSFDNLALVIIDEQHRFGVHQRLELREKGAKQG 417 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + D+++ER++ Sbjct: 418 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERIRHA 477 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L+EGK+AYW+C I+E + ++ E L I ++HGRM +K++VM + Sbjct: 478 CLNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQTVMQA 537 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FKN LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL+ Sbjct: 538 FKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF 597 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 H PLSK + RL VL+ + DGF+IA+ DL+ R GE+LG KQ+G+ F IA L+ Sbjct: 598 HAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLV 657 Query: 657 EIARKDAKHILTQDP 671 ++ A+HI + P Sbjct: 658 PQVQRIARHIHERYP 672 >gi|89092443|ref|ZP_01165397.1| ATP-dependent DNA helicase RecG [Oceanospirillum sp. MED92] gi|89083531|gb|EAR62749.1| ATP-dependent DNA helicase RecG [Oceanospirillum sp. MED92] Length = 692 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 258/679 (37%), Positives = 383/679 (56%), Gaps = 26/679 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRPKISEISEERIV 70 P+S +GVG L K+ N G R I DLLF+ P + DR I + Sbjct: 9 PVSELKGVGTALEL---KLHNLG----IRTIQDLLFHLPLRYQDRTRIVPIGSLRPSDES 61 Query: 71 TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 I G + + + KRR + DGTG +TL FF+ KN G +I G+ + Sbjct: 62 VIEGEV-KIADISRGKRRSLLCRIQDGTGTLTLRFFHFSAAQ-KNNLKPGTRIRCFGEAR 119 Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLP--VL 185 + + +VHP Y +S ++ P+ E +Y GL + + +AL L L Sbjct: 120 TGASGLEIVHPEYKKVDSDEL-VPVEECLTPIYPTTEGLHQGRLRALTDQALDYLKRGAL 178 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALL 241 E I + L Q FP + +A +H P D E PA+ RLA++EL++ ++LL Sbjct: 179 QELIPEQLRQGWKFPGLNDAVAYLHRPPVDVDQHLLLEGLHPAQRRLAFEELVSHHLSLL 238 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R++ +K+ + G + + L+ +PF T +Q+ +++ +D++ MLR++QGD Sbjct: 239 KLRQKTRKKGAPELPGNGDLVKPFLQQLPFPLTGAQQRVSQEVARDLALPYPMLRLVQGD 298 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VA +A +VE+G QA +MAP ILA+QH+ + + I V + G + Sbjct: 299 VGSGKTVVAALAALQSVESGLQAAVMAPTEILAEQHFINFSNWLEPLGIKVAWLAGKLKG 358 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-- 419 R+ LE I G+A +++GTHALFQ+ + + L LV++DEQHRFGV QRL L +K Sbjct: 359 KQRKTQLEAIREGEARVVVGTHALFQEEVVFSDLGLVVIDEQHRFGVHQRLSLREKGRNG 418 Query: 420 --APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 APH L+MTATPIPRTL +++ D+D S I E P GR P+ TV+I NR DEVI+R++ Sbjct: 419 ELAPHQLIMTATPIPRTLTMSAYADLDCSIIDELPPGRTPVNTVVIADNRRDEVIQRVRK 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 +E ++ YW+C IEE + ++ L E I ++HGRM +K +M Sbjct: 479 ACAEKRQVYWVCTLIEESEALQCQAAEVTAEQLTEALPELRIGLVHGRMKPAEKADIMQK 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK+ LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+L+Y Sbjct: 539 FKSAELDLLVATTVIEVGVDVPNASVMIIENPERLGLAQLHQLRGRVGRGSVESFCVLMY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PLS RL+V++ T DGF IAE+DL+ R GE+LG +Q+G+ +F +A + +L Sbjct: 599 QAPLSNQGRERLAVMRETTDGFRIAEKDLELRGPGEVLGTRQTGVMQFKMADLQRDSDML 658 Query: 657 EIARKDAKHILTQDPDLTS 675 + + A+ L + PD Sbjct: 659 DKVKMLAQQ-LQEWPDFAD 676 >gi|296107648|ref|YP_003619349.1| ATP-dependent DNA helicase RecG [Legionella pneumophila 2300/99 Alcoy] gi|295649550|gb|ADG25397.1| ATP-dependent DNA helicase RecG [Legionella pneumophila 2300/99 Alcoy] Length = 690 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 251/668 (37%), Positives = 386/668 (57%), Gaps = 30/668 (4%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS 77 GVG + +K+ CG DLLF+ P + DR I ++ I G++ Sbjct: 11 GVGPTIA---AKLAKCGIFT---IQDLLFHLPYKYQDRTRITPIQDLRSNEWCVIAGHVC 64 Query: 78 QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137 + + + KR + D TG + L FF+ + ++ I G+++ N++ Sbjct: 65 K-TEIKYGKRMMLNCYVEDKTGIVKLRFFHFNKQQIQ-ALNNSAMIRAFGEVRGFNNQLE 122 Query: 138 MVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSR----LPVLPEWIE 190 M+HP Y + Q+ +F + E +Y GL+ ++++ AL + L L EW+ Sbjct: 123 MIHPEYQLID-QESDFHVEETLTPIYPSTQGLTQTRLRQLVKIALEQSEHELHQL-EWMS 180 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS------PARERLAYDELLAGQIALLLMR 244 + LQ+ +F + EA ++HNP D ++ PA +RL +DELLA Q+++ R Sbjct: 181 EKQLQENNFYDLGEAIKLLHNP--PPDISLSNLEAGEHPALKRLIFDELLAQQLSMQFAR 238 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 + K I + I ++ + ++PFS T +Q+ K+I D++Q MLR+LQGDVG+ Sbjct: 239 QSRSKLQAPAILFDNAIHKRFIESLPFSLTNAQQRVFKEISVDLTQSKPMLRLLQGDVGA 298 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKT++A +A A+ G Q MAP +L++QH + K+ + I V ++G M R Sbjct: 299 GKTIIAALAALQAISQGFQVAFMAPTDLLSEQHTNSLSKWLEPIGINVLRLSGKMKTTER 358 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---- 420 + AL + +I+GTHALFQ+ +++ +L LVI+DEQHRFGV+QRL L QK Sbjct: 359 KNALAALQDNSCQLIVGTHALFQEQVEFARLGLVIIDEQHRFGVEQRLLLQQKGQLNQLI 418 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 PH LLMTATPIPRTL ++ +DIS I E P GR PI T ++ ++ + +IERL+ ++ Sbjct: 419 PHQLLMTATPIPRTLSMSHFAHLDISVIDELPPGRMPITTAVLNQDKRELIIERLQAAIA 478 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKN 539 GK+AYW+C IEE ++ + + L E + + + ++HGRM ++KE+ M +FK Sbjct: 479 NGKQAYWVCTLIEESEKLQCIAATDTSKKLQEQLSFARVGLVHGRMKALEKEATMAAFKQ 538 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S C+LLY P Sbjct: 539 GEIDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGNNQSHCLLLYQSP 598 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 LS+ RL ++++T DGFLI+E+DL+ R GEILG +Q+G +F IA + +L I Sbjct: 599 LSQQGAERLKIMRSTTDGFLISEKDLELRGSGEILGTRQTGFRQFKIANLQRDKTLFAIL 658 Query: 660 RKDAKHIL 667 R AK ++ Sbjct: 659 RPIAKQLM 666 >gi|153871444|ref|ZP_02000613.1| ATP-dependent DNA helicase RecG [Beggiatoa sp. PS] gi|152072089|gb|EDN69386.1| ATP-dependent DNA helicase RecG [Beggiatoa sp. PS] Length = 687 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 265/686 (38%), Positives = 399/686 (58%), Gaps = 40/686 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDR-HYRPKIS-EISE 66 + P++T GV + + L+++ T+ D+LF+ P + +R +P I EI E Sbjct: 1 MITPINTLHGVNEPIAEQLARL----GIQTTQ--DMLFHLPLRYENRTQIKPLIDLEIGE 54 Query: 67 ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFY---RKTEMLKNVFFEGRKI 123 V + G I Q + + KRR + +L+DGTG I L FF+ + E LK G ++ Sbjct: 55 S--VLVEGTI-QTAEVKFGKRRSFICMLSDGTGTIMLRFFHFYPSQREKLKP----GVRL 107 Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEAL 179 G+I++ + +VHP +S + + PL+E +Y + L+ LF +I + Sbjct: 108 RCFGEIRQGYQCLELVHPQVECIDSAN-SAPLLEEHLTPIYPSNSHLNQALFYSLIDQIF 166 Query: 180 SR---LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDE 232 + + +PE I K + + EA I+H P E PA+ RL ++E Sbjct: 167 EQHEPIDYIPELIRKPF----NLLPLGEALQILHRPPPDISLQALQEGQHPAQRRLVFEE 222 Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292 LLA ++L +++ Q ++ EG++ K+L +PF TK+Q+ +I D+ + Sbjct: 223 LLAFHLSLYMLKAQAHSRKAPSLDNEGELIPKLLAQLPFQLTKAQQQVHAEIATDLHATH 282 Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352 M R+LQGDVGSGKT+VA + A+E+G Q +MAP +L++QH + ++ + +I + Sbjct: 283 PMQRLLQGDVGSGKTIVAALCALQAIESGYQVAVMAPTELLSEQHKQTFSQWLEPLEIEL 342 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 +TG++ + R +ALE+IA GQA ++IGTHALFQ +++ L LVIVDEQHRFGV QRL Sbjct: 343 TWLTGSLTKKKREQALEKIASGQAALVIGTHALFQKEVEFANLGLVIVDEQHRFGVHQRL 402 Query: 413 KLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468 L K T PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TVIIP R Sbjct: 403 ALRNKGTQSGLYPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVIIPNTRR 462 Query: 469 DEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526 DE+IER+ V E ++AYW+C IEE + F++ E L + + I ++HGR+ Sbjct: 463 DEIIERINHVCQHEDRQAYWVCTLIEESEVMQFQAAEETVEQLQKALPALQIGLVHGRIK 522 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 +KE VM+ FK LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG Sbjct: 523 PKEKEEVMEKFKQRQLHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 582 Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646 S C+LLY PLS+ + +RL+ +++ DGFLIA+ DL+ R G++LG +Q G+ I Sbjct: 583 AVQSYCVLLYQQPLSEIAKSRLATIRDHHDGFLIAQRDLEIRGPGDVLGTRQKGVLNLRI 642 Query: 647 AQPELHDSLLEIARKDAKHILTQDPD 672 A + + LL + K +L + P+ Sbjct: 643 ADLQRDEDLLPEVVEAGKILLEKFPE 668 >gi|52842250|ref|YP_096049.1| ATP-dependent DNA helicase RecG [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629361|gb|AAU28102.1| ATP dependent DNA helicase RecG [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 690 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 251/668 (37%), Positives = 385/668 (57%), Gaps = 30/668 (4%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS 77 GVG + +K+ CG DLLF+ P + DR I ++ I G++ Sbjct: 11 GVGPTIA---AKLAKCGIFT---IQDLLFHLPYKYQDRTRITPIQDLRSNEWCVIAGHVY 64 Query: 78 QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137 + + + KR + D TG + L FF+ + ++ I G+++ N + Sbjct: 65 K-TEIKYGKRMMLNCYVEDKTGVVKLRFFHFNKQQIQ-ALNNSTMIRAFGEVRGFNNHLE 122 Query: 138 MVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSR----LPVLPEWIE 190 M+HP Y + Q+ +F + E +Y GL+ ++++ AL + L L EW+ Sbjct: 123 MIHPEYQLID-QESDFHVEETLTPIYPSTQGLTQTRLRQLVKIALEQSEHELHQL-EWMS 180 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS------PARERLAYDELLAGQIALLLMR 244 + LQ+ +F + EA ++HNP D ++ PA +RL +DELLA Q+++ R Sbjct: 181 EKQLQENNFYDLGEAIKLLHNP--PPDISLSNLEAGEHPALKRLIFDELLAQQLSMQFAR 238 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 + K I + I ++ + ++PFS T +Q+ K+I D++Q MLR+LQGDVG+ Sbjct: 239 QSRSKLQAPAILFDNAIHKRFIESLPFSLTNAQQRVFKEISFDLTQSKPMLRLLQGDVGA 298 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKT++A +A A+ G Q MAP +L++QH + K+ + I V ++G M R Sbjct: 299 GKTIIAALAALQAISQGFQVAFMAPTDLLSEQHTNSLSKWLEPIGINVLRLSGKMKTTER 358 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---- 420 + AL + +I+GTHALFQ+ +++ +L LVI+DEQHRFGV+QRL L QK Sbjct: 359 KNALAALQDNSCQLIVGTHALFQEQVEFARLGLVIIDEQHRFGVEQRLLLQQKGQLNQLI 418 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 PH LLMTATPIPRTL ++ +DIS I E P GR PI T ++ ++ + +IERL+ ++ Sbjct: 419 PHQLLMTATPIPRTLSMSHFAHLDISVIDELPPGRMPITTAVLNQDKRELIIERLQAAIA 478 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKN 539 GK+AYW+C IEE ++ + + L E + + + ++HGRM ++KE+ M +FK Sbjct: 479 NGKQAYWVCTLIEESEKLQCMAATDTSKKLQEQLSFARVGLVHGRMKALEKEATMAAFKQ 538 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S C+LLY P Sbjct: 539 GEIDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGNNQSHCLLLYQSP 598 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 LS+ RL ++++T DGFLI+E+DL+ R GEILG +Q+G +F IA + +L I Sbjct: 599 LSQQGAERLKIMRSTTDGFLISEKDLELRGSGEILGTRQTGFRQFKIANLQRDKTLFAIL 658 Query: 660 RKDAKHIL 667 R AK ++ Sbjct: 659 RPIAKQLV 666 >gi|157825974|ref|YP_001493694.1| ATP-dependent DNA helicase RecG [Rickettsia akari str. Hartford] gi|157799932|gb|ABV75186.1| ATP-dependent DNA helicase RecG [Rickettsia akari str. Hartford] Length = 743 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 266/717 (37%), Positives = 390/717 (54%), Gaps = 82/717 (11%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 LF+ + TF + + L ++ N R DLLFY P S+ ++ P ++E+ + Sbjct: 9 LFSSIKTFINIREDTVYALKRL----GINNIR--DLLFYLPVSYKNKILWPNLTEVRDGE 62 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 I+ T + + + + +P KI + TG + L+FF++ + N G K ++GK Sbjct: 63 IIQ-TEIVIESVNLPKKSNQPLKITASHDTGSLLLVFFHKPPPFIFNKLKVGTKHIISGK 121 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 ++ + + + HP +I N L IE +YSL LS I++A+ Sbjct: 122 VQFFDHYLQISHPEFI------TNPKLAKEIEPIYSLTYLLSNKQLYSYIIKAIEIFEEK 175 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHN---------------------PRKAKDFEWTSPA 224 + +E D K+ I ++ N++H PR ++ + Sbjct: 176 CKVVE-DKEVKEYLDEILQSLNVLHVREVVIQLLDHGINKSIKKDWIPRSSRGMTQDKSS 234 Query: 225 R-------ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 R ++LA EL+A QI+L +R Q + G I IL + F T+ Q Sbjct: 235 RYDTESFKKQLAAKELIANQISLFNVRTQMSRRQGNIYMKAAAIQANILNELGFELTQYQ 294 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + I++I + S K M+++LQGDVGSGKTLVAL+ + V+AG QA +MAP +LA QH Sbjct: 295 KQVIEEIEFEQSDKVEMMKLLQGDVGSGKTLVALLTIVNVVKAGFQATLMAPTDLLANQH 354 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 YEF K +NT I + ++TG + A R+ ++++ +G+ I++GTHALFQ+ + + KL Sbjct: 355 YEFCVKALKNTNIRIALLTGKILGAARKNIMQQLKNGEIDILVGTHALFQEKVSFKKLGY 414 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +++DEQHRFGVQQRL L K P VL+MTATPIPR+L LT GD+ ISK+ KP R P Sbjct: 415 IVIDEQHRFGVQQRLNLINKGLNPDVLVMTATPIPRSLALTMFGDMSISKLMGKPKNRLP 474 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE------------------------ 493 I T + +N+I+ +IE + L G++ YWICP +E Sbjct: 475 IATNTMSVNKIEHIIESINKKLIAGERVYWICPLVEQSPSHDVIPRLDPGIQKKIKKDWI 534 Query: 494 -----------EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542 E+++S V+ RFNS+ + IIHG+M + KE +M FK G Sbjct: 535 LCRSHGMTMEEEQEDSLLMDVINRFNSIENIYQGYTGIIHGKMKNEQKEQIMKQFKAGEI 594 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LS 601 K+L+ATTVIEVGIDV +A++IIIENAE FGLAQLHQLRGRVGRG S CILLY+P L Sbjct: 595 KILVATTVIEVGIDVPEATLIIIENAERFGLAQLHQLRGRVGRGSLQSYCILLYNPKRLG 654 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ-PELHDSLLE 657 K + R ++K T DGF IAE+DLK R GE+LG+KQSG +F A E +D LL+ Sbjct: 655 KVARGRFEIMKQTNDGFYIAEQDLKLRGSGEVLGVKQSGEMEFFFADLAEDYDLLLK 711 >gi|167854894|ref|ZP_02477670.1| ATP-dependent DNA helicase recG [Haemophilus parasuis 29755] gi|167853961|gb|EDS25199.1| ATP-dependent DNA helicase recG [Haemophilus parasuis 29755] Length = 693 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 263/677 (38%), Positives = 383/677 (56%), Gaps = 28/677 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+ GVG S LS+I N DLLF+ P + DR I+++ E T Sbjct: 10 PLTALSGVGAAISEKLSRI-GINNVQ-----DLLFHLPLRYEDRTRITPIADVRPESFAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G++ Q + Q +R ++DGT +ITL FF M KN G ++ G+IK+ Sbjct: 64 VEGFV-QLTEVQFGRRPILSTTISDGTSKITLKFFNFNAGM-KNSLATGVRVKAFGEIKR 121 Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + M HP Y I +Q + + +Y GL +K+ +AL+ L E + Sbjct: 122 GRFMAEMHHPEYQIIRGNQPLELAETLTPIYPTTEGLKQASLRKLTDQALALL----ERV 177 Query: 190 E-KDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALL 241 + +LL + P S+ EA ++H P + E PA++RL ++ELLA +A+ Sbjct: 178 QVAELLPDEFNPHKYSLKEALQLLHRPPPSVSSELLDKGEHPAQKRLIFEELLAHNLAMQ 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P+ + + Q+ L +PF PT +Q +I QD+++ M+R++QGD Sbjct: 238 QVRMGVQQHFAEPLCYQTDLKQRFLATLPFQPTNAQSRVTAEIEQDLAKPFPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A++ G Q +MAP ILA+QH + + I V + G + Sbjct: 298 VGSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHAHNFANWLRPFGIEVGWLAGKVKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R LE I +G +IIGTHALFQD ++++ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARTAQLEAIKNGDVQMIIGTHALFQDQVEFHHLALVIIDEQHRFGVHQRLTLREKGAKG 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL-K 476 PH L+MTATPIPRTL +T D+D S I E P GR PI TV I +R DEV+ R+ + Sbjct: 418 DVYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEVVRRVYQ 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +E ++AYW+C I+E + ++ L I ++HGRM +K+++M Sbjct: 478 ACKNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQAIMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK LL+ATTVIEVG+DV +AS++IIEN+E GLAQLHQLRGRVGRG S C+L+ Sbjct: 538 EFKAADIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLM 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PL K S RL VL++++DGF+IAE+DL+ R GE+LG KQ+GM +F IA + Sbjct: 598 YKAPLGKISTKRLQVLRDSQDGFVIAEKDLEIRGPGEVLGTKQTGMAEFKIANLMRDRKM 657 Query: 656 LEIARKDAKHILTQDPD 672 + + + AK + + PD Sbjct: 658 IPLVQSYAKQLTLKYPD 674 >gi|110833029|ref|YP_691888.1| ATP-dependent DNA helicase RecG [Alcanivorax borkumensis SK2] gi|110646140|emb|CAL15616.1| ATP-dependent DNA helicase RecG [Alcanivorax borkumensis SK2] Length = 703 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 266/679 (39%), Positives = 380/679 (55%), Gaps = 34/679 (5%) Query: 17 RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76 +GVG + L+K+ G N DLLF+ P + DR I + E V I G + Sbjct: 15 KGVGPAAAEKLAKL---GLHN---LEDLLFHLPFRYEDRTRISPIGSLRPETGVVIEGQV 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 + +RR + DGTG +TL F++ KN GR I V G+ + + Sbjct: 69 MA-ADVIFGRRRSLLCKVADGTGMVTLRFYHFSAAQ-KNTLERGRTIRVYGEPRPGSAGL 126 Query: 137 IMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPVLP--EWIE 190 HP Y + D P +E VY G+S + + +AL L P E I Sbjct: 127 EFYHPEYQL-DYADSGLPPLEKALTPVYPTTDGVSQKTLRNLTGQALKYLQAHPPQELIP 185 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQ 246 LL + PS+A+A + +HNPR E PA +RL +E++A Q+ +L ++ Sbjct: 186 AQLLDQSGLPSLADALSKLHNPRPDDPVNLLLEGKHPAVKRLVMEEMVAHQLGML-QKRA 244 Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 +K P + +K+ ++PF+ T +Q+ I +++ DM Q + MLR++QGDVGSGK Sbjct: 245 GQKAFHAPRLGGQTLFEKLQDSLPFNLTGAQKRVIGELMGDMKQAHPMLRLVQGDVGSGK 304 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366 TLVA A AA+E+G Q +MAP +LA+QH E + I V + G++ RR+ Sbjct: 305 TLVAAAAALAAIESGYQVALMAPTELLAEQHRENFHHWLAPLGIKVHWLAGSLGVKARRE 364 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-------- 418 +A G AHI++GTHALFQ+++Q+++L L I+DEQHRFGVQQRL L +K Sbjct: 365 TNAALADGSAHIVVGTHALFQEAVQFHRLGLTIIDEQHRFGVQQRLALREKGREDNAHGI 424 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH L++TATPIPRTL ++ GD+D S I E P GRKPI T+++P +R +VIER+ Sbjct: 425 QVPHQLVLTATPIPRTLAMSVYGDLDTSVIDEMPPGRKPIDTLVLPESRRPQVIERINDA 484 Query: 479 LSEGKK-----AYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532 K AYW+C IEE +E ++ F L + ++HGRM +K Sbjct: 485 CRPSAKKKNTQAYWVCTLIEESEELQAQAAEATFAELQIALPELKVELVHGRMKAKEKAE 544 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 M F G +LLIATTVIEVG+DV +A+++++ENAE GLAQLHQLRGRVGRG E S C Sbjct: 545 RMARFSRGEAQLLIATTVIEVGVDVPNATLMVMENAERLGLAQLHQLRGRVGRGAEQSYC 604 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +LLY PLS RL+V+++T DGF+IAEEDLK R GE LG +Q+G F IA Sbjct: 605 LLLYKNPLSHTGKRRLAVMRDTTDGFVIAEEDLKLRGPGEWLGTRQTGDLAFRIADLVRD 664 Query: 653 DSLLEIARKDAKHILTQDP 671 ++L+E A++ A ++ P Sbjct: 665 EALMEPAKEIANKLMQDYP 683 >gi|254507298|ref|ZP_05119434.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus 16] gi|219549758|gb|EED26747.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus 16] Length = 692 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 262/677 (38%), Positives = 395/677 (58%), Gaps = 28/677 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG K + L+K+ DLLF+ P + DR I+++ Sbjct: 9 PLTSLTGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 62 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + KR+ + L+DG G ITL FF T +KN F EG+ + G++K+ Sbjct: 63 VQGKVMAVDTL-FGKRKMLTVKLSDGNGTITLRFF-NFTAAMKNNFAEGKTVHAYGEVKR 120 Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188 + +VHP Y F+ DV L VY GL + + +AL+ +L + Sbjct: 121 GGFGLEIVHPDYKFYAPNQKTDVEETLT-PVYPTTEGLRQITLRNLTEQALA---LLDKS 176 Query: 189 IEKDLLQKKSFP---SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALL 241 ++LL + ++ +A + IH P D E +PA+ RL +ELLA +++L Sbjct: 177 TVQELLPAGLYDHQITLGQALHTIHRPPPNMDLDQFDEGKNPAQIRLIMEELLAQNLSML 236 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R + ++ +P+ ++ Q++L +PF+PT +Q + +I QD+++ + M+R++QGD Sbjct: 237 SVRSKGLQDAALPLGESHQLKQQLLNQLPFTPTNAQARVVGEIEQDLAKPHPMMRLVQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+E G Q +MAP +LA+QH + + I V + G + Sbjct: 297 VGSGKTLVAALAAVRALEHGYQVALMAPTELLAEQHAINFANWFEPMGIKVGWLAGKLKG 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA--- 418 + L RIA G+A +++GTHALFQ+ + + L LVI+DEQHRFGV QRL+L +K Sbjct: 357 KAKEAELARIASGEAQMVVGTHALFQEHVAFDHLALVIIDEQHRFGVHQRLELREKGEKQ 416 Query: 419 -TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 T PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + D+++ER++ Sbjct: 417 GTYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRN 476 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 L+EGK+AYW+C I+E + ++ + L I ++HGRM +K++VM Sbjct: 477 ACLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQ 536 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK+ LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 537 DFKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLL 596 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 YH PLSK + RL+VL+ + DGF+IA+ DL+ R GE+LG KQ+G+ F IA L Sbjct: 597 YHSPLSKTAQKRLAVLRESNDGFVIAQRDLEIRGPGELLGTKQTGIADFKIADLVRDQRL 656 Query: 656 LEIARKDAKHILTQDPD 672 + ++ A+HI PD Sbjct: 657 IPEVQRIARHIHDHYPD 673 >gi|170078462|ref|YP_001735100.1| ATP-dependent DNA helicase RecG [Synechococcus sp. PCC 7002] gi|169886131|gb|ACA99844.1| ATP-dependent DNA helicase [Synechococcus sp. PCC 7002] Length = 822 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 254/681 (37%), Positives = 398/681 (58%), Gaps = 33/681 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL G+G K S L+K+ ET D LFY+P ID + KI+++ VT Sbjct: 128 PLMYLPGIGPKRSNQLAKL-----GLET-VRDALFYYPRQHIDYAKQVKITDLEAGETVT 181 Query: 72 ITGYISQHSSF---QLQKRRPYKILLNDGTGEITLLFFYRKT--------EMLKNVFFEG 120 + G++ + + F + QK +++ L D +G I L FY T E +K + +G Sbjct: 182 LVGHVVRCNIFTSPKNQKLSIFELWLRDSSGRIKLSRFYAGTRYSNRGWQEKMKRQYPQG 241 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE-----AVYSLPTGLSVDLFKKII 175 I +G +KK K + + +P +S + ++ VY L G+ DL +K++ Sbjct: 242 VAIAASGLVKKNKYGLTLDNPEIEVLDSSGADIKSLKIGRVLPVYPLTEGVPADLIRKVV 301 Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235 + +L + L + ++ + EA IH P A E AR+RL +DE Sbjct: 302 INSLPAIAQLKDAFPTAFREQHGLMKLQEAIANIHFPENA---EILQQARQRLVFDEFFY 358 Query: 236 GQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 Q+ L R+Q K + + +G++ ++ + +PF T +Q+ I +IL D++Q M Sbjct: 359 LQLGFLQRRQQEKASQKSAVFIPQGELIKRFEKLLPFQLTNAQQRVITEILADLAQSTPM 418 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R++QGDVG+GKT+VA+ A+ AA+++G QA +MAP +LA+QHY + + + VE+ Sbjct: 419 NRLVQGDVGAGKTVVAVFAILAAIQSGYQAALMAPTEVLAEQHYRKLVGWFNLLHLPVEL 478 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 +TG+ RR+ ++ G+ +++GTHAL +D +Q+ L LV++DEQHRFGVQQR +L Sbjct: 479 LTGSTKTKKRREIHSQLQTGELKVLVGTHALIEDPVQFQNLGLVVIDEQHRFGVQQRGRL 538 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 K APHVL MTATPIPR+L LT GD+D+S+I E P GR+PI T +I + E Sbjct: 539 LAKGKAPHVLTMTATPIPRSLALTLHGDLDVSQIDELPPGRQPIDTRVIKGGDRHKAYEL 598 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKES 532 +K +++G++AY I P IEE ++ ++ V L E S + ++HGRM +K++ Sbjct: 599 IKREVAQGRQAYVIFPLIEESEKLEAKAAVAEHQRLSEQVFKSFNVGLLHGRMKSEEKDA 658 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +++F++ ++++TTVIEVG+DV +A++++IENAE FGL+QLHQLRGRVGRG+ S C Sbjct: 659 ALNAFRDNQNHIIVSTTVIEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGQHQSHC 718 Query: 593 ILLYHPPLSKN--SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 +L+ + SKN S TRL VL+ + DGF I+E DL+ R GE+LG KQSG+P F +A Sbjct: 719 LLVTN---SKNPDSQTRLRVLEQSTDGFFISEMDLRLRGPGEVLGTKQSGLPDFALASLT 775 Query: 651 LHDSLLEIARKDAKHILTQDP 671 +L IAR+ A+ +L DP Sbjct: 776 EDQEVLLIARQAAEQLLKIDP 796 >gi|90407853|ref|ZP_01216029.1| ATP-dependent DNA helicase RecG [Psychromonas sp. CNPT3] gi|90311028|gb|EAS39137.1| ATP-dependent DNA helicase RecG [Psychromonas sp. CNPT3] Length = 690 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 271/677 (40%), Positives = 390/677 (57%), Gaps = 30/677 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS GVG K L+KI N +DLLF+ P + DR IS++ + V+ Sbjct: 7 PLSALHGVGIKMLEKLAKI------NMHNVVDLLFHLPLHYQDRACVYPISQLQDGMQVS 60 Query: 72 ITGYISQHSSFQLQK--RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 I G I S Q+QK RR K + D +G L FF+ +N F EGR I G+ Sbjct: 61 IAGRIV---SCQVQKGKRRILKCKIRDESGIACLNFFHFNVAQ-QNAFTEGRLIQCFGEF 116 Query: 130 KKLKNRIIMVHP--HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--L 185 K+ + + HP H+I ++ + VY GL + +K+++++L L + Sbjct: 117 KRGYQGVEVTHPEYHFIDQRQENTQGGHLTPVYPSTDGLKQNNLRKLVLQSLQLLQQNGI 176 Query: 186 PEWIEKDLLQKKSFP-SIAEAFNIIHNPRKAKDFEW----TSPARERLAYDELLAGQIAL 240 E + LL S P S+ +A +H P E + PA++RL +ELLA Q+ + Sbjct: 177 EEVLPTHLL---SHPLSLQDALLYLHQPPTDACIEQLEARSHPAQQRLILEELLAQQVNM 233 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L+MR +K + I +A K+L +PF+ T++Q +I D+ + M+R++QG Sbjct: 234 LMMRSAVQKNKSMDIAKSTILAPKLLHALPFTATQAQLRVGIEIADDLQKNIPMMRLVQG 293 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKTLVA +A + +EAG Q +MAP +LA+QH + + + V +++G M Sbjct: 294 DVGSGKTLVAALAALSVIEAGYQVALMAPTELLAEQHRLTFQNWFAPLGVRVGMLSGKMK 353 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-- 418 +R I G A ++IGTHALF D++ + L L+IVDEQHRFGV QRL L K Sbjct: 354 VKEKRSQTLDIQLGLAQMVIGTHALFSDNVVFKNLQLIIVDEQHRFGVHQRLALLSKGQS 413 Query: 419 --TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL- 475 APH L MTATPIPRTL +T+ D+ IS I E PAGR P++T ++P R ++I+R+ Sbjct: 414 GDVAPHQLTMTATPIPRTLAMTAYADLKISVIDELPAGRMPVQTTVLPEMRRGDIIKRVY 473 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 + ++G++AYW+C I E + ++ + N+L I ++HGRMS ++K+ VM Sbjct: 474 QACKNQGRQAYWVCTLICESEVLQCQAAEDIANNLQLSLVDLRIGLVHGRMSALEKQYVM 533 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 D+FK+G LL+ATTVIEVG+DV +AS++IIENAE GLAQLHQLRGRVGRG S C+L Sbjct: 534 DAFKSGELDLLVATTVIEVGVDVPNASLMIIENAERLGLAQLHQLRGRVGRGTVASHCVL 593 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 LY PLS + RL +L+ + DGF IAE+DL R GE+LG KQ+G+ F IA S Sbjct: 594 LYKDPLSNVAKKRLQILRRSNDGFYIAEQDLLIRGPGEVLGTKQTGVASFKIADLLRDQS 653 Query: 655 LLEIARKDAKHILTQDP 671 LL ++ A +LTQ P Sbjct: 654 LLPDVQRLAGLLLTQHP 670 >gi|156936175|ref|YP_001440091.1| ATP-dependent DNA helicase RecG [Cronobacter sakazakii ATCC BAA-894] gi|156534429|gb|ABU79255.1| hypothetical protein ESA_04074 [Cronobacter sakazakii ATCC BAA-894] Length = 693 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 263/688 (38%), Positives = 389/688 (56%), Gaps = 30/688 (4%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MR L+ + PLS+ GVG S L+KI DLL + P + DR + Sbjct: 1 MRGRLLDAV--PLSSLTGVGASQSAKLAKI------GLHTIQDLLLHFPLRYEDRTHLYP 52 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 IS++ T+ G + + + RR ++DGTG +T+ FF M KN G Sbjct: 53 ISDLLPGVYATVEGEVL-NCNITFGGRRMMTCQISDGTGILTMRFFNFNAAM-KNSLATG 110 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIV 176 R++ G+ K+ K M+HP Y DV+ P ++ VY G+ +K+ Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRIQG--DVSTPEMQETLTPVYPTTEGVRQATLRKLTD 168 Query: 177 EALSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNP---RKAKDFE-WTSPARERLAY 230 +AL L + E + +L Q S+ EA +H P K +D E PA+ RL Sbjct: 169 QALELLETCAITELLPPELSQ--GLMSLPEALRTLHRPPPDMKLEDLESGQHPAQRRLIL 226 Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290 +ELLA +++L +R ++ P+ + Q++L ++PF PT +Q + +I +DM+ Sbjct: 227 EELLAHNLSMLALRAGAQRYHAQPLEARDALKQQLLASLPFKPTGAQARVVAEIERDMAL 286 Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350 M+R++QGDVGSGKTLVA +A A+ G Q +MAP +LA+QH + + I Sbjct: 287 DIPMMRLVQGDVGSGKTLVAALAALRAIANGKQVALMAPTELLAEQHANNFRNWFAPLGI 346 Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410 V + G R+ E IA GQ +++GTHA+FQ+ +Q+ L LVI+DEQHRFGV Q Sbjct: 347 EVGWLAGKQKGKARQAQQEAIASGQVSMVVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQ 406 Query: 411 RLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466 RL L +K PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP Sbjct: 407 RLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDT 466 Query: 467 RIDEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGR 524 R ++IER++ L EG++AYW+C IEE + ++ + L ++ ++HGR Sbjct: 467 RRGDIIERVRSACLEEGRQAYWVCTLIEESELLEAQAAEATWEELKTTLPELNVGLVHGR 526 Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584 M +K++VM +FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVG Sbjct: 527 MKPAEKQAVMQAFKQGEMHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVG 586 Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644 RG S C+LLY PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F Sbjct: 587 RGAVASHCVLLYKSPLSKTAQIRLQVLRDSNDGFMIAQKDLEIRGPGELLGTRQTGNAEF 646 Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPD 672 +A +++ ++ A+HI + P+ Sbjct: 647 KVADLLRDQAVIPEVQRIARHIHERYPE 674 >gi|238750785|ref|ZP_04612283.1| ATP-dependent DNA helicase recG [Yersinia rohdei ATCC 43380] gi|238710929|gb|EEQ03149.1| ATP-dependent DNA helicase recG [Yersinia rohdei ATCC 43380] Length = 693 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 259/676 (38%), Positives = 389/676 (57%), Gaps = 26/676 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLST GVG + L+K+ ET DLL + P + DR +I ++ VT Sbjct: 10 PLSTLSGVGASQAGKLAKL-----GLET-IQDLLLHLPLRYEDRTQLYRIGDLLPGLCVT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + S +RR + DG+G +TL FF M KN G+ + G+ K+ Sbjct: 64 VEGEVLR-SDISFGRRRMMTCQITDGSGVLTLRFFNFNAAM-KNSLSPGKHVIAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRL--PVLP 186 ++HP Y H +++ L E+ VY G+ +K+I +AL+ L V+ Sbjct: 122 GNTGPEIIHPEYRVHG-ENIGVELQESLTPVYPTTEGIRQATLRKLIDQALAMLDTSVIA 180 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALLL 242 E + +L +S S+ EA + +H P + D E PA+ RL +ELLA +++L Sbjct: 181 ELLPIEL--SRSLISLPEAIHTLHRPPANIQLTDLEQGKHPAQRRLIMEELLAHNLSMLA 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R + +P+ E + Q+ L +PF+PT +Q+ + +I QDM+ M+R++QGDV Sbjct: 239 VRAGAQSYRALPLLAEDNLKQRFLAALPFTPTGAQQRVVAEIEQDMTHNYPMMRLIQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+ G Q +MAP +LA+QH +++ + + V + G Sbjct: 299 GSGKTLVAALAALRAIAQGKQVALMAPTELLAEQHANTFRQWLEPLGLEVGWLAGKQKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R E +A GQ +++GTHA+FQ+ +++ L LVI+DEQHRFGV QRL L +K Sbjct: 359 ARLAQQEAVASGQVAMVVGTHAMFQEQVKFSGLALVIIDEQHRFGVHQRLALWEKGEEQG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R +VI+R+K Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDVIQRVKNA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L EG++AYW+C IEE + ++ L + ++HGRM +K++VM + Sbjct: 479 CLEEGRQAYWVCTLIEESELLEAQAAEVTCEELRIALPEIKVGLVHGRMKGPEKQAVMLA 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK G +LL+ATTVIEVG+DV +AS++II+N E GLAQLHQLRGRVGRG S C+LLY Sbjct: 539 FKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAVASHCVLLY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PLSK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G +F +A +++ Sbjct: 599 KTPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSTEFKVADLLRDQAMI 658 Query: 657 EIARKDAKHILTQDPD 672 ++ A+H+ Q P+ Sbjct: 659 PEVQRVARHLHQQYPE 674 >gi|54297960|ref|YP_124329.1| ATP-dependent DNA helicase RecG [Legionella pneumophila str. Paris] gi|53751745|emb|CAH13167.1| ATP-dependent DNA helicase RecG [Legionella pneumophila str. Paris] Length = 690 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 251/668 (37%), Positives = 385/668 (57%), Gaps = 30/668 (4%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS 77 GVG + +K+ CG DLLF+ P + DR I ++ I G++ Sbjct: 11 GVGPTIA---AKLAKCGIFT---IQDLLFHLPYKYQDRTRITPIQDLRSNEWCVIAGHVC 64 Query: 78 QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137 + + + KR + D TG + L FF+ + ++ I G+++ N++ Sbjct: 65 K-TEIKYGKRMMLNCYVEDKTGVVKLRFFHFNKQQIQ-ALNNSTMIRAFGEVRGFNNQLE 122 Query: 138 MVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSR----LPVLPEWIE 190 M+HP Y + Q+ +F + E +Y GL+ ++++ AL + L L EW+ Sbjct: 123 MIHPEYQLID-QESDFHVEETLTPIYPSTQGLTQTRLRQLVKIALEQSEHELHQL-EWMS 180 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS------PARERLAYDELLAGQIALLLMR 244 + LQ+ +F + EA ++HNP D ++ PA +RL +DELLA Q+++ R Sbjct: 181 EKQLQENNFYDLGEAIKLLHNP--PPDISLSNLEAGEHPALKRLIFDELLAQQLSMQFAR 238 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 + K I + I ++ + ++PFS T +Q+ K+I D++Q MLR+LQGDVG+ Sbjct: 239 QSRSKLQAPAILFDNAIHKRFIESLPFSLTNAQQRVFKEISVDLTQSKPMLRLLQGDVGA 298 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKT++A +A A+ G Q MAP +L++QH + K+ + I V ++G M R Sbjct: 299 GKTIIAALAALQAISQGFQVAFMAPTDLLSEQHTNSLSKWLEPIGINVLRLSGKMKATER 358 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---- 420 + AL + +I+GTHALFQ+ +++ L LVI+DEQHRFGV+QRL L QK Sbjct: 359 KNALAALQDNSCQLIVGTHALFQEQVEFACLGLVIIDEQHRFGVEQRLLLQQKGQLNQLI 418 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 PH LLMTATPIPRTL ++ +DIS I E P GR PI T ++ ++ + +IERL+ ++ Sbjct: 419 PHQLLMTATPIPRTLSMSHFAHLDISVIDELPPGRMPITTAVLNQDKRELIIERLQAAIA 478 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKN 539 GK+AYW+C IEE ++ + + L E + + + ++HGRM ++KE+ M +FK Sbjct: 479 NGKQAYWVCTLIEESEKLQCIAATDTSKKLQEQLSFARVGLVHGRMKALEKEATMAAFKQ 538 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S C+LLY P Sbjct: 539 GEIDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGNNQSHCLLLYQSP 598 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 LS+ RL ++++T DGFLI+E+DL+ R GEILG +Q+G +F IA + +L I Sbjct: 599 LSQQGAERLKIMRSTTDGFLISEKDLELRGSGEILGTRQTGFRQFKIANLQRDKTLFTIL 658 Query: 660 RKDAKHIL 667 R AK ++ Sbjct: 659 RPIAKQLV 666 >gi|229521777|ref|ZP_04411195.1| ATP-dependent DNA helicase RecG [Vibrio cholerae TM 11079-80] gi|229341371|gb|EEO06375.1| ATP-dependent DNA helicase RecG [Vibrio cholerae TM 11079-80] Length = 692 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 263/675 (38%), Positives = 391/675 (57%), Gaps = 26/675 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL GVG K + L K+ DLLF+ P + DR I ++ Sbjct: 9 PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + KR+ + ++DG G +TL FF T +KN F EG+ + G+IK+ Sbjct: 63 VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFF-NFTAAMKNNFAEGKFVHAYGEIKR 120 Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186 + ++HP Y F + DV P + VY GL + + +AL+ L + Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVE-PNLTPVYPTTEGLRQLTLRNLTDQALALLEKSAVQ 179 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242 E + L ++ ++A+A IIH P D + PA+ RL +ELLA +++L Sbjct: 180 ELLPSGLYDQQM--TLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLA 237 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R Q ++++ +P+ ++ Q++L +PF+PTK+Q+ + +I D+ + + M+R++QGDV Sbjct: 238 IRSQGQQDVALPLAPIHQLKQQLLAQLPFTPTKAQQRVVAEIEADLEKPHPMMRLVQGDV 297 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+E G Q +MAP +LA+QH ++ + I V + G + Sbjct: 298 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHSLNFAQWLEPMGIQVGWLAGKLKGK 357 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R L RIA G+ +++GTHALFQ+ + + L LVI+DEQHRFGV QRL+L +K Sbjct: 358 ARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQG 417 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + DE++ER++ Sbjct: 418 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHA 477 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L+EGK+AYW+C I+E + ++ E L I ++HGRM +K++VM + Sbjct: 478 CLNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQA 537 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FKN LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL+ Sbjct: 538 FKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF 597 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 H PLSK + RL VL+ + DGF+IA+ DL+ R GE+LG KQ+G+ F IA L+ Sbjct: 598 HAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLV 657 Query: 657 EIARKDAKHILTQDP 671 + A+HI + P Sbjct: 658 PQVQHIARHIHERYP 672 >gi|254225434|ref|ZP_04919045.1| ATP-dependent DNA helicase RecG [Vibrio cholerae V51] gi|125622068|gb|EAZ50391.1| ATP-dependent DNA helicase RecG [Vibrio cholerae V51] Length = 692 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 263/675 (38%), Positives = 391/675 (57%), Gaps = 26/675 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL GVG K + L K+ DLLF+ P + DR I ++ Sbjct: 9 PLCELSGVGAKIAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + KR+ + ++DG G +TL FF T +KN F EG+ + G+IK+ Sbjct: 63 VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFF-NFTAAMKNNFAEGKFVHAYGEIKR 120 Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186 + ++HP Y F + DV P + VY GL + + +AL L + Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVE-PNLTPVYPTTEGLRQLTLRNLTDQALVLLEKSAVQ 179 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242 E + L ++ ++A+A IIH P D + PA+ RL +ELLA +++L Sbjct: 180 ELLPSGLYDQQM--TLAQALKIIHRPSADIDLRLFEQGRHPAQIRLIMEELLAQNLSMLA 237 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R Q ++++ +P+ ++ Q++L +PF+PTK+Q+ + +I D+ + + M+R++QGDV Sbjct: 238 IRSQGQQDVALPLAPVHQLKQQLLAQLPFTPTKAQQRVVAEIEADLEKPHPMMRLVQGDV 297 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+E G Q +MAP +LA+QH ++ + I V + G + Sbjct: 298 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHSLNFAQWLEPMGIRVGWLAGKLKGK 357 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R L RIA G+ +++GTHALFQ+ + + L LVI+DEQHRFGV QRL+L +K Sbjct: 358 ARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQG 417 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + DE++ER++ Sbjct: 418 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHA 477 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L+EGK+AYW+C I+E + ++ E L I ++HGRM +K++VM + Sbjct: 478 CLNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQA 537 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FKN LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL+ Sbjct: 538 FKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF 597 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 H PLSK + RL VL+ + DGF+IA+ DL+ R GE+LG KQ+G+ F IA L+ Sbjct: 598 HAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLV 657 Query: 657 EIARKDAKHILTQDP 671 ++ A+HI + P Sbjct: 658 PQVQRIARHIHERYP 672 >gi|78486490|ref|YP_392415.1| ATP-dependent DNA helicase RecG [Thiomicrospira crunogena XCL-2] gi|78364776|gb|ABB42741.1| ATP-dependent DNA helicase RecG [Thiomicrospira crunogena XCL-2] Length = 690 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 260/655 (39%), Positives = 378/655 (57%), Gaps = 35/655 (5%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L+T +GVG K + K+ G + DLLF+ P + D+ S++ + I Sbjct: 7 LTTLKGVGDK---LVEKLNRLGLFH---VQDLLFHLPLRYQDKTKLTPASQLLIGQEALI 60 Query: 73 TG-YISQHSSFQLQKRRPYKI--LLNDGTGEITLLFF---YRKTEMLKNVFFEGRKITVT 126 G I QH + Q R I L++ I+ FF YR+ + K G K+ Sbjct: 61 EGEIIGQHMT---QSRNSSLIVKLVDPSNQPISCRFFHFHYRQAQQFKR----GLKLRAY 113 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLP 183 G+++ + + +VHP Y N + PL E VY + GL K++ + L L Sbjct: 114 GEVRSGPSGLEIVHPTYQLFNPESPP-PLEETLTPVYPVTEGLGQPTLLKLMQQTLQLLK 172 Query: 184 VLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQ 237 P E + LL++ P I ++ +H P+ D + PA+ RL ++ELL Q Sbjct: 173 QYPLEEALPPSLLEELRLPPINQSLQTLHEPQPEDDLLQIKRFEHPAQRRLIFEELLTHQ 232 Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 ++L L+R+ K+ I P + A ++L+N+PF T +Q + DI QD +Q + M R+ Sbjct: 233 LSLQLLRQHEKQRIA-PKVPASETASRLLKNLPFKLTGAQSRVLNDIQQDFNQPHPMQRL 291 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 +QGDVGSGKT++A +A +AG Q +MAP ILA+QH ++ I V + G Sbjct: 292 IQGDVGSGKTIIAALAALQVADAGYQVAVMAPTEILAEQHKNHFLEWLDPLDIPVAWLNG 351 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL--- 414 M A +R+AL++I G+A +IIGTHALFQDS+ + L LVI+DEQHRFGV QRL L Sbjct: 352 RMKAAEKREALQKIESGKAKVIIGTHALFQDSVTFDHLGLVIIDEQHRFGVHQRLALHDK 411 Query: 415 -TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 TQ + PH L+MTATPIPRTL +T+ GD+D+S I E P GR+PI+T ++ + EV+E Sbjct: 412 GTQNDSHPHQLIMTATPIPRTLAMTAYGDLDLSIIDELPPGRQPIETAVLNNTKRFEVME 471 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532 L+ +G +AYW+CP IEE + + ++ +H+ + +IHGR+ +K Sbjct: 472 HLQAQCKQGVQAYWVCPLIEESELLHAQAAEVTAQQFMDHWPDLRVGLIHGRLKAEEKTE 531 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 M +FKN LL+ATTVIEVG++V +AS++IIENAE GLAQLHQLRGRVGRG + S C Sbjct: 532 RMRAFKNHELDLLVATTVIEVGVNVPNASLMIIENAERLGLAQLHQLRGRVGRGSKKSHC 591 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 +LLY P+ + S RL++++ + DGF IAEEDLK R GEILG +Q+G F IA Sbjct: 592 VLLYQSPMGETSKARLNIMRESNDGFKIAEEDLKIRGPGEILGTRQTGGLHFRIA 646 >gi|157373470|ref|YP_001472070.1| ATP-dependent DNA helicase RecG [Shewanella sediminis HAW-EB3] gi|157315844|gb|ABV34942.1| ATP-dependent DNA helicase RecG [Shewanella sediminis HAW-EB3] Length = 691 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 253/679 (37%), Positives = 392/679 (57%), Gaps = 28/679 (4%) Query: 10 FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69 P++ +GV KK + L+K+ DLLF+ P + DR I+ + Sbjct: 6 LVPVTELKGVAKKMAERLAKL------GIHTVQDLLFHLPLRYEDRTQIYPIASLYPGNY 59 Query: 70 VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 TI I Q S ++R + D TG +TL FF KN G I G+I Sbjct: 60 GTIEAVI-QSSQIIQGRKRMLTCTVRDDTGSLTLRFFNFSVAQ-KNGLENGLTIRAYGEI 117 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186 ++ K++ ++HP Y + + + PL + VY GL + K+ +AL+ +L Sbjct: 118 RRGKHQAEIIHPEYKLVQT-NSDLPLSDTLTPVYPTTEGLKQASWIKLTEQALA---LLE 173 Query: 187 EWIEKDLLQKKSFP---SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIA 239 E ++L+ + P S+ A ++H P + + T PA++RL +ELLA ++ Sbjct: 174 EGGLQELIPPELQPNNLSLKAALMLLHRPHNGVNLFELEQGTHPAQQRLIQEELLAHNLS 233 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 +L +R++ ++ + + G++ L+++PF PT +Q+ DI D+ + M+R++Q Sbjct: 234 MLKLRQRSNRDKAVLMPASGQLLNPFLKSLPFKPTGAQQRVGADISTDLEKPFPMMRLVQ 293 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT+VA +A A+E G Q +MAP +LA+QH E ++ + + V + G + Sbjct: 294 GDVGSGKTIVAALAALQAIENGYQVAMMAPTELLAEQHAENFTQWFEPLGLKVGWLAGKL 353 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R ++L I G+A+++IGTHA+FQ+ + + KL L+I+DEQHRFGV QRL L +K Sbjct: 354 KGKARTQSLMDIESGEANMVIGTHAIFQEKVTFNKLALIIIDEQHRFGVHQRLGLREKGI 413 Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 A PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV + +R +EVIER+ Sbjct: 414 AQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVATVAVSDSRRNEVIERV 473 Query: 476 K-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533 + ++G++AYW+C IEE + ++ + L T + ++HGRM +K+++ Sbjct: 474 RQAATNDGRQAYWVCTLIEESEVLECQAAEDTAEELRLMLTELKVGLVHGRMKSAEKQAI 533 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+ Sbjct: 534 MAEFKAGNLNLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCV 593 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 L+Y PLS ++ RL VL+++ DGF+IA++DL+ R GE+LG KQ+G+ IA Sbjct: 594 LMYKAPLSPSATKRLGVLRDSNDGFIIAQKDLEIRGPGEVLGTKQTGIADMKIADLIRDQ 653 Query: 654 SLLEIARKDAKHILTQDPD 672 +L+ +K A H++ Q PD Sbjct: 654 ALIPHIQKLAVHLMQQAPD 672 >gi|148976489|ref|ZP_01813185.1| ATP-dependent DNA helicase RecG [Vibrionales bacterium SWAT-3] gi|145964065|gb|EDK29322.1| ATP-dependent DNA helicase RecG [Vibrionales bacterium SWAT-3] Length = 692 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 265/682 (38%), Positives = 389/682 (57%), Gaps = 38/682 (5%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG K + L K+ N DLLF+ P + DR I ++ Sbjct: 9 PLNSLSGVGAKVAEKLEKV-GLNNVQ-----DLLFHLPLRYEDRTRIYPIIKLHAGIWAA 62 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + KR+ + ++DG G ITL FF T +KN F EG+++ G+IK+ Sbjct: 63 VQGKVMSVDTI-FGKRKMLAVKISDGNGTITLRFF-NFTAGMKNNFAEGKQVHAYGEIKR 120 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA----VYSLPTGLSVDLFKKIIVEALSRLPVLPE 187 + +VHP Y F + P +EA VY GL + + +AL E Sbjct: 121 GNMGLEIVHPDYKFFAPR--QQPDVEANLTPVYPTTEGLRQVTLRNLTDQAL-------E 171 Query: 188 WIEK----DLLQKKSFP---SIAEAFNIIHNPRKAKDFEW----TSPARERLAYDELLAG 236 I+K +LL + ++A+A + IH P D E PA+ RL +ELLA Sbjct: 172 LIDKAAVNELLPSGLYDHQITLAQALHTIHRPPPGIDLELFDEGKHPAQLRLIMEELLAQ 231 Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 +++L +R + +++ + + + K+L +PFSPT +Q ++I D+ + + M+R Sbjct: 232 NLSMLSVRSKGQQDKAMSLPPMNTLKDKLLAQLPFSPTNAQARVTQEIETDLEKPHPMMR 291 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 ++QGDVGSGKTLVA +A A+E G Q +MAP +LA+QH + + I V + Sbjct: 292 LVQGDVGSGKTLVAALAAVRALEHGQQVALMAPTELLAEQHAINFANWFEAMGIQVGWLA 351 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G + R L RIA G+A +++GTHALFQ+ +++ L LVI+DEQHRFGV QRL+L + Sbjct: 352 GKLKGKARETELARIASGEAQMMVGTHALFQEHVEFKNLGLVIIDEQHRFGVHQRLELRE 411 Query: 417 KATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 K PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + D+++ Sbjct: 412 KGAKQGYYPHQLVMTATPIPRTLAMTAYADLETSIIDELPPGRTPIQTVAIPDTKRDDIV 471 Query: 473 ERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530 ER++ L+EGK+AYW+C I+E + ++ + L I ++HGRM +K Sbjct: 472 ERVRNACLNEGKQAYWVCTLIDESEVLEAQAAADTAEDLQRKLPDVKIGLVHGRMKPAEK 531 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 ++VM FK LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S Sbjct: 532 QAVMQEFKENKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVAS 591 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 C+LLYH PLSK + RL VL+ + DGF+IA+ DL+ R GE+LG KQ+G+ F IA Sbjct: 592 HCVLLYHSPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLV 651 Query: 651 LHDSLLEIARKDAKHILTQDPD 672 L+ ++ A+HI PD Sbjct: 652 RDQRLIPEVQRIARHIHDSYPD 673 >gi|238755589|ref|ZP_04616926.1| ATP-dependent DNA helicase recG [Yersinia ruckeri ATCC 29473] gi|238706189|gb|EEP98569.1| ATP-dependent DNA helicase recG [Yersinia ruckeri ATCC 29473] Length = 693 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 259/676 (38%), Positives = 391/676 (57%), Gaps = 26/676 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLST GVG + L+K+ ET DLL + P + DR +I+++ T Sbjct: 10 PLSTLSGVGASQAGKLAKM-----GLET-IQDLLLHLPLRYEDRTRLYRINDLLPGIFAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + S +RR ++DG+G +TL FF M KN G+ + G+ K Sbjct: 64 VKGEVLR-SDISFGRRRMLTCQISDGSGILTLRFFNFNAAM-KNSLSPGKHVIAYGETKC 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRL--PVLP 186 + ++HP Y H +++ L E+ VY G+ +K+I +AL L + Sbjct: 122 GNHGPEIIHPEYRVHG-ENIGVELQESLTPVYPTTEGIRQATLRKLIDQALVLLDTSAIT 180 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALLL 242 E + +L ++ S+ +A +H P + D E PA+ RL +ELLA +++L Sbjct: 181 ELLPTEL--SRTLISLPDAIRTLHRPPADIQLADLELGKHPAQRRLILEELLAHNLSMLA 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R + +P+ E ++ + L N+PF+PT +Q+ + +I +D++ K M+R++QGDV Sbjct: 239 VRAGAQSYKALPLLAEEQLKPRFLANLPFAPTSAQKRVVAEIERDLTNKFPMMRLIQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKT+VA +A A+ G Q +MAP +LA+QH +++ + + V + G Sbjct: 299 GSGKTVVAALAALRAIAHGKQVALMAPTELLAEQHANTFRQWFEPLGLEVGWLAGKQKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R E IA G+ +++GTHA+FQD +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 359 ARIAQQEAIASGKVSMVVGTHAIFQDQVQFSGLALVIIDEQHRFGVHQRLALWEKGEEQG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP +R +E+I R+K Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDSRRNEIIIRVKNA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L EG++AYW+C IEE + ++ L + ++HGRM +K+SVM S Sbjct: 479 CLEEGRQAYWVCTLIEESELLEAQAAEATCEELKIALPEVRVGLVHGRMKAAEKQSVMQS 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK G +LL+ATTVIEVG+DV +AS++II+N E GLAQLHQLRGRVGRG S C+LLY Sbjct: 539 FKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAVASHCVLLY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++L Sbjct: 599 KTPLSKTAQMRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAML 658 Query: 657 EIARKDAKHILTQDPD 672 ++ A+H+ Q PD Sbjct: 659 PEVQRIARHLQQQYPD 674 >gi|94499884|ref|ZP_01306420.1| ATP-dependent DNA helicase RecG [Oceanobacter sp. RED65] gi|94428085|gb|EAT13059.1| ATP-dependent DNA helicase RecG [Oceanobacter sp. RED65] Length = 695 Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust. Identities = 248/659 (37%), Positives = 379/659 (57%), Gaps = 22/659 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ + VG + L+K+ G N DL F+ P + DR I + V Sbjct: 12 PVTALKNVGPAMAEKLAKL---GIHN---VQDLAFHLPLRYQDRTRITPIGGLRANLDVV 65 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G I + + KRR + + DGTG +TL FF+ KN +G +I G+ + Sbjct: 66 VEGDI-KAADVVFGKRRSLVVRIQDGTGTLTLRFFHFSAAQ-KNKLKKGERIRCFGEARP 123 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKII--VEALSRLPV-L 185 K+ + + HP Y F + + + P + +Y GL+ +++++ V AL + V + Sbjct: 124 GKSGLELYHPEYQFMDELN-DTPTEQTLTPIYPSTEGLAQIRWRQLMSQVVALIKQGVGV 182 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALL 241 + + +LL K+ PS+A+A +H P D + + PA+ RL +ELLA +++ Sbjct: 183 EDLLPAELLTSKNMPSLAQALLYLHQPPVGSDLDQMELYAHPAQHRLIIEELLAHNLSMQ 242 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 MR++ ++ I K+L+ +PF+PT +Q+ ++I+ D ++ MLR++QGD Sbjct: 243 KMREEMQRHAAPAIPASQDYLAKLLKQLPFTPTNAQQRVNQEIVADFAKGFPMLRLVQGD 302 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A +E G Q IMAP ILA+QH + + + + I + + G + Sbjct: 303 VGSGKTLVAAMAALHVLEQGYQVAIMAPTEILAEQHLKNFQGWMEPLGISMAWLAGKVKG 362 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R L I G A +I+GTHALFQ+ +++ L L I+DEQHRFGV QRL L +K + Sbjct: 363 KAREATLNAIKQGDAQLIVGTHALFQNDVEFKNLCLAIIDEQHRFGVHQRLALREKGKSI 422 Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 PH L+MTATPIPRTL +++ D+D S I E P GR P+ TV+I +R D+++ER++ Sbjct: 423 NPHQLIMTATPIPRTLAMSAYADLDTSIIDELPPGRSPVNTVVIDQDRRDQIVERIRAAC 482 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538 EG++AYW+C IEE +E ++ SL + I ++HGR+ +K +M +FK Sbjct: 483 IEGRQAYWVCTLIEESEEMEAQAAEVTAQSLQDALPELKIGMVHGRLKAQEKADIMAAFK 542 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G LL+ATTVIEVG+DV +AS+++IEN E GLAQLHQLRGRVGRG S C+LLY Sbjct: 543 AGDLHLLVATTVIEVGVDVPNASLMVIENPERLGLAQLHQLRGRVGRGTAQSHCVLLYQT 602 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PLS+ RL +++T DGF IAE DL+ R GE+LG +Q+G+ + IA + LL+ Sbjct: 603 PLSQQGKQRLHAMRDTSDGFKIAEIDLQIRGPGEVLGTRQTGLMQMRIADLQRDGYLLD 661 >gi|259906721|ref|YP_002647077.1| ATP-dependent DNA helicase RecG [Erwinia pyrifoliae Ep1/96] gi|224962343|emb|CAX53798.1| ATP-dependent DNA helicase RecG [Erwinia pyrifoliae Ep1/96] gi|283476504|emb|CAY72319.1| ATP-dependent DNA helicase RecG [Erwinia pyrifoliae DSM 12163] Length = 693 Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust. Identities = 254/679 (37%), Positives = 375/679 (55%), Gaps = 32/679 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+T GVG + L+K+ DLL + P + DR I+ + T Sbjct: 10 PLNTLSGVGASQATKLAKL------GLVTVQDLLLHLPLRYEDRTQLYAINNLLPGIYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + HS +RR + DGTG +TL FF M KN GR++T G+IK+ Sbjct: 64 VEGEVL-HSDISFGRRRMLTCQIGDGTGTLTLRFFNFNAGM-KNSLAVGRRVTAYGEIKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEALSRLP------ 183 + ++HP Y V + VYS G+ + + +AL+ L Sbjct: 122 GQRGAEIIHPEYKVQGEHSVTGLQETLTPVYSTTEGVRQATLRNLTDQALTLLDTCAIAE 181 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK----AKDFEWTSPARERLAYDELLAGQIA 239 +LP + L+ S+ +A +H P A T PA+ RL +ELLA ++ Sbjct: 182 LLPPQLSGGLI------SLPDALRTLHRPPPDIALADLNSGTHPAQRRLIMEELLAHNLS 235 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 +L +R ++ +P++ +++ ++L +PF PT +Q+ +++I D++ M+R++Q Sbjct: 236 MLAVRAGAQRYHALPMSPRHELSDRLLTALPFRPTAAQQRVVREIENDLAHDYPMMRLVQ 295 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKTLVA + + G Q +MAP +LA+QH +++ + V + G Sbjct: 296 GDVGSGKTLVAALTALNVIAWGKQVALMAPTELLAEQHANNFRQWFAPLGLEVGWLAGKQ 355 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R E IA GQ +I+GTHA+FQ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 356 KGKARLAQQEAIASGQVSMIVGTHAIFQQQVQFNGLALVIIDEQHRFGVHQRLALWEKGE 415 Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 H L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I R+ Sbjct: 416 EQGFHSHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRRADIITRV 475 Query: 476 K-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533 K SEG++AYW+C IEE + ++ + L +I ++HGRM +K++V Sbjct: 476 KDACGSEGRQAYWVCTLIEESELLEAQAAQATWEELQLALPELTIGLVHGRMKPAEKQAV 535 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M +FK G LLIATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+ Sbjct: 536 MQAFKQGEIHLLIATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCV 595 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 LLY PLSK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G +F +A Sbjct: 596 LLYKSPLSKTAQKRLQVLRDSNDGFVIAQCDLEIRGPGELLGTRQTGNAEFRVADLLRDQ 655 Query: 654 SLLEIARKDAKHILTQDPD 672 +L+ ++ A+HI P+ Sbjct: 656 ALIPEVQRVARHIHQHYPE 674 >gi|123440445|ref|YP_001004439.1| ATP-dependent DNA helicase RecG [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087406|emb|CAL10187.1| ATP-dependent DNA helicase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 693 Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust. Identities = 260/676 (38%), Positives = 392/676 (57%), Gaps = 26/676 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLST GVG + L+K+ ET DLL + P + DR +I ++ VT Sbjct: 10 PLSTLSGVGASQAGKLAKM-----GLET-IQDLLLHLPLRYEDRTRLYRIGDLLPGLSVT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + S +RR ++DG+G +TL FF M KN G+ + G+ K+ Sbjct: 64 VEGEVLR-SDISFGRRRMMTCQISDGSGVLTLRFFNFNAAM-KNSLSPGKHVIAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRL--PVLP 186 ++HP Y H +++ L E+ VY G+ +K+I +AL+ L V+ Sbjct: 122 GNTGPEIIHPEYRVHG-ENIGVELQESLTPVYPTTEGIRQATLRKLIDQALAMLDSSVIA 180 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALLL 242 E + +L +S S+ EA +I+H P + D E PA+ RL +ELLA +++L Sbjct: 181 ELLPIEL--SRSLISLPEAIHILHRPPADIQLADLEQGKHPAQRRLIMEELLAHNLSMLA 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R + +P+ E ++ ++ L +PF+PT +Q+ + +I QDM+ M+R++QGDV Sbjct: 239 VRAGAQSYRALPLLPEEQLKRRFLAALPFTPTHAQQRVVAEIEQDMTHSYPMMRLIQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+ G Q +MAP +LA+QH +++ + + V + G Sbjct: 299 GSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANTFRQWLEPLGLEVGWLAGKQKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R E +A GQ +++GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 359 ARLAQQEAVASGQVSMVVGTHAMFQEQVQFSGLALVIIDEQHRFGVHQRLALWEKGEEQG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R +VI+R+K Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDVIQRVKNA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L EG++AYW+C IEE + ++ L + ++HGRM +K++VM + Sbjct: 479 CLEEGRQAYWVCTLIEESELLEAQAAEVTCEELKIALPEIKVGLVHGRMKGPEKQAVMLA 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK G +LL+ATTVIEVG+DV +AS++II+N E GLAQLHQLRGRVGRG S C+LLY Sbjct: 539 FKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAVASHCVLLY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PLSK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G +F +A +++ Sbjct: 599 KTPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKVADLLRDQAMI 658 Query: 657 EIARKDAKHILTQDPD 672 ++ A+H+ Q P+ Sbjct: 659 PEVQRVARHLHQQYPE 674 >gi|37520847|ref|NP_924224.1| ATP-dependent DNA helicase RecG [Gloeobacter violaceus PCC 7421] gi|35211842|dbj|BAC89219.1| DNA recombinase [Gloeobacter violaceus PCC 7421] Length = 811 Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust. Identities = 236/680 (34%), Positives = 392/680 (57%), Gaps = 26/680 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ G+G K + L K+ T +L Y+P ++D R I +VT Sbjct: 120 PMTKLGGIGPKLAAQLEKL------GLTTIGQVLRYYPRDYLDYSNRTTIKVCQPGEMVT 173 Query: 72 ITGYISQHSSF---QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE--------G 120 + G + + F + K + + L DGTG++ L F+ T + E G Sbjct: 174 LLGQVRRCRCFTSPRNHKLSIFTLTLGDGTGQMQLSQFFAGTRFTHRGWQEAQMKQYPRG 233 Query: 121 RKITVTGKIKKLKNRIIMVHPHY-IFHNSQDV-NFPLIEAVYSLPTGLSVDLFKKIIVEA 178 + +G +K+ + + P + +D+ N I VY+L G+ + ++ + A Sbjct: 234 ATVAASGLVKRSTTGLTLQEPQLEVLDEGEDLQNLTKIVPVYALAEGVGAGVVRRAVKAA 293 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L + + + + A +H P A E AR RL +DE Q+ Sbjct: 294 LPFANAFTDPLPAAVRTSLGLLDLPGAIRAVHYPESA---EHKLQARRRLVFDEFFFLQL 350 Query: 239 ALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 LL R +Q ++ GI G++ ++ + +PF+ T +Q+ ++++L D+ M R+ Sbjct: 351 GLLQRRHRQKRQSAGIAFRTRGELIEQFYKLLPFAFTGAQKRVVEEVLADLGSPEPMNRL 410 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 +QGDVGSGKT+VA++AM A+++G Q +MAP +LA+QHY+ + ++ + VE++TG Sbjct: 411 IQGDVGSGKTVVAVVAMLTALQSGYQTALMAPTEVLAEQHYQKLVQWLSQLHLPVELVTG 470 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 ++ A RR L ++A G+ ++++GTHAL QD +Q+ L LV++DEQHRFGV QR +L K Sbjct: 471 SVRAARRRDVLRQLASGELNVVVGTHALIQDGVQFANLGLVVIDEQHRFGVGQRARLQNK 530 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 P +L MTATPIPRTL LT GD+D+S+I E P GRKP++T ++ + +V E ++ Sbjct: 531 GRNPDLLTMTATPIPRTLALTLHGDLDVSQIDELPPGRKPVRTTVVTPSERTQVNELIRR 590 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMD 535 + EG++AY + P IEE ++ + RS +E L E + + ++HGR+ +KE+V+ Sbjct: 591 QILEGRQAYIVLPLIEESEKVDLRSAIEEHERLKEKIFAEFRLGLLHGRLKSEEKEAVIG 650 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +F+ LL++TTV+EVG+DV +A++++IE+AE FGLAQLHQLRGRVGRG S C+L+ Sbjct: 651 AFRRHELDLLVSTTVVEVGVDVPNATVMLIEHAERFGLAQLHQLRGRVGRGANQSFCLLM 710 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 ++++ RL VL+ + DGFLIAE DL+ R GE++G +QSG+P +++ Sbjct: 711 SATK-TESALQRLRVLEQSNDGFLIAEMDLRLRGPGEVMGTRQSGLPDMVLSSLVEDQDS 769 Query: 656 LEIARKDAKHILTQDPDLTS 675 LE+AR++A+ ++ +DP+LT+ Sbjct: 770 LELARREAQSLIERDPELTA 789 >gi|219871623|ref|YP_002475998.1| ATP-dependent DNA helicase RecG [Haemophilus parasuis SH0165] gi|219691827|gb|ACL33050.1| ATP-dependent DNA helicase [Haemophilus parasuis SH0165] Length = 693 Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust. Identities = 262/677 (38%), Positives = 383/677 (56%), Gaps = 28/677 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+ GVG S LS+I N DLLF+ P + DR I+++ E T Sbjct: 10 PLTALSGVGAAISEKLSRI-GINNVQ-----DLLFHLPLRYEDRTRITPIADVRPESFAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G++ Q + Q +R ++DGT +ITL FF M KN G ++ G+IK+ Sbjct: 64 VEGFV-QLTEVQFGRRPILSTTISDGTSKITLKFFNFNAGM-KNSLATGVRVKTFGEIKR 121 Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + + HP Y I +Q + + +Y GL +K+ +AL+ L E + Sbjct: 122 GRFMAEIHHPEYQIIRGNQPLELAETLTPIYPTTEGLKQASLRKLTDQALALL----ERV 177 Query: 190 E-KDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALL 241 + +LL + P S+ EA ++H P + E PA++RL ++ELLA +A+ Sbjct: 178 QVAELLPDEFNPHKYSLKEALQLLHRPPPSVSSELLDKGEHPAQKRLIFEELLAHNLAMQ 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P+ + + Q+ L +PF PT +Q +I QD+++ M+R++QGD Sbjct: 238 QVRMGVQQHFAEPLCYQTDLKQRFLATLPFQPTNAQSRVTAEIEQDLAKPFPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A++ G Q +MAP ILA+QH + + I V + G + Sbjct: 298 VGSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHAHNFANWLRPFGIEVGWLAGKVKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R LE I +G +IIGTHALFQD ++++ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARTAQLEAIKNGDVQMIIGTHALFQDQVEFHHLALVIIDEQHRFGVHQRLTLREKGAKG 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL-K 476 PH L+MTATPIPRTL +T D+D S I E P GR PI TV I +R DEV+ R+ + Sbjct: 418 DVYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEVVRRVYQ 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +E ++AYW+C I+E + ++ L I ++HGRM +K+++M Sbjct: 478 ACKNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQHALPDLRIGLVHGRMKPQEKQAIMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK LL+ATTVIEVG+DV +AS++IIEN+E GLAQLHQLRGRVGRG S C+L+ Sbjct: 538 EFKAADIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLM 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PL K S RL VL++++DGF+IAE+DL+ R GE+LG KQ+GM +F IA + Sbjct: 598 YKAPLGKISSKRLQVLRDSQDGFVIAEKDLEIRGPGEVLGTKQTGMAEFKIANLMRDRKM 657 Query: 656 LEIARKDAKHILTQDPD 672 + + + AK + + PD Sbjct: 658 IPLVQSYAKQLTLKYPD 674 >gi|304311594|ref|YP_003811192.1| RecG-like helicases [gamma proteobacterium HdN1] gi|301797327|emb|CBL45547.1| RecG-like helicases [gamma proteobacterium HdN1] Length = 698 Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust. Identities = 253/679 (37%), Positives = 382/679 (56%), Gaps = 25/679 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L +P+ +GVG ++ L+++ + DLLF+ P + DR I+ + + Sbjct: 11 LRSPVQYLKGVGPTLAVLLTRL------HIHTVQDLLFHLPFRYQDRTQLTPIATLEGSQ 64 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 I G + + +RR + + DG+G + + F+ K F +G+ + G+ Sbjct: 65 EALIQGEVLS-CDIHMGRRRTLAVRITDGSGTLLIRMFHFSATQQKQ-FAKGQWLRCYGE 122 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLPVL 185 + + MVHP Y + D PL E+ +Y L G+S K+ EAL+RL Sbjct: 123 ARVTASGREMVHPEYRLID--DPEQPLTESLTPIYPLTEGISQARLLKLTEEALTRLDAH 180 Query: 186 PEWIE---KDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQI 238 E +E + L Q + PS+A+A + +H P + + PA++RLA +E+LA + Sbjct: 181 REALELVPEALFQARKLPSLADALHYVHRPPTDANVYQLLNGSHPAQQRLALEEMLAHHL 240 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 +L +R + P+ ++ + +L+ +PF+PT +Q +I D+ Q MLR++ Sbjct: 241 SLRKLRATIRHHPAPPMPASRELIRGLLQRLPFAPTGAQNRVFAEIEADLQQPAPMLRLV 300 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKTLVA +A A+EAG Q +MAP ILA+QHY+ ++ + + +TG Sbjct: 301 QGDVGSGKTLVAALAALQAIEAGYQVALMAPTEILAEQHYQNFCEWFEPLGLHTHWLTGK 360 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + +R LE G H++ GTHALFQD + Y +L LVI+DEQHRFGV QRL L QK Sbjct: 361 LSARQKRLVLEDTRTGHTHLLAGTHALFQDDVHYARLGLVIIDEQHRFGVHQRLALKQKG 420 Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 PH L+MTATPIPRTL +++ D+D S I E P GR PI TV + +R DE+I+R Sbjct: 421 AVNGILPHQLIMTATPIPRTLAMSAYADLDTSIIDELPPGRTPITTVAVDASRRDEIIQR 480 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533 + G++AYW+C IEE + ++ + L I +IHGRM +K V Sbjct: 481 VYQNCKTGRQAYWVCTLIEESETLQCQAAEDTTEYLRAALPDLQIGLIHGRMKAREKSQV 540 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M++F+ +LL+ATTVIEVG++V +AS++IIEN E GLAQLHQLRGRVGRG S C+ Sbjct: 541 MEAFQQNAIQLLVATTVIEVGVNVPNASLMIIENPERLGLAQLHQLRGRVGRGAAQSFCV 600 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 LLY PLS+ R+ +++ + DGF+IA+ DL+ R GE+LG +Q+G F +A Sbjct: 601 LLYQKPLSRAGRERIEIMRESHDGFVIAQRDLELRGPGEVLGTRQTGDLNFKVADLLRDQ 660 Query: 654 SLLEIARKDAKHILTQDPD 672 LL+ + A H+L+ PD Sbjct: 661 DLLDDCKALADHVLSHHPD 679 >gi|260770798|ref|ZP_05879727.1| ATP-dependent DNA helicase RecG [Vibrio furnissii CIP 102972] gi|260614035|gb|EEX39225.1| ATP-dependent DNA helicase RecG [Vibrio furnissii CIP 102972] gi|315178840|gb|ADT85754.1| ATP-dependent DNA helicase RecG [Vibrio furnissii NCTC 11218] Length = 703 Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust. Identities = 264/686 (38%), Positives = 407/686 (59%), Gaps = 30/686 (4%) Query: 5 FLNPLFA--PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62 F++ L + PLS+ GVG K + L KI N + DLLF+ P + DR I Sbjct: 11 FMSQLLSAIPLSSLSGVGAKVAEKLEKI----GLNSVQ--DLLFHLPLRYEDRTRVYPII 64 Query: 63 EISEERIVTITGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 ++ + G + + ++F +R+ + ++DG G +TL FF T +KN F +G+ Sbjct: 65 KLHPGLWAAVQGKVMAVDTTFG--RRKMLTVKISDGNGTLTLRFF-NFTAGMKNNFADGK 121 Query: 122 KITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEAL 179 + G+IK+ + ++HP Y F +Q+ + P + VY GL + + +AL Sbjct: 122 LVHAYGEIKRGNGGLEIIHPDYKFFAPAQNPDVEPNLTPVYPTTDGLRQLTLRNLTDQAL 181 Query: 180 SRLPVLPEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDE 232 + +L + ++LL + ++A+A + IH P D E PA+ RL +E Sbjct: 182 A---LLDKAAVQELLPSGLYDHQITLAQALHTIHRPPADIDLSLFDEGRHPAQIRLIMEE 238 Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292 LLA +++L +R + ++++ +P+ ++ Q++L +PFSPT++Q +++I D+++ + Sbjct: 239 LLAQNLSMLAVRSKGQQDVALPLPETHQLKQQLLAQLPFSPTQAQARVVREIEADLAKPH 298 Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352 M+R++QGDVGSGKTLVA +A A+E G Q +MAP +LA+QH + + I V Sbjct: 299 PMMRLVQGDVGSGKTLVAALAAVRALEHGYQVALMAPTELLAEQHALNFANWFERMGIPV 358 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 + G + + L RIA G+ +++GTHALFQ+ + + L LVI+DEQHRFGV QRL Sbjct: 359 GWLAGKLKGKAKEAELARIASGEVKMVVGTHALFQEHVVFDHLSLVIIDEQHRFGVHQRL 418 Query: 413 KLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468 +L +K PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV IP + Sbjct: 419 ELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSIIDELPPGRTPIQTVAIPDTKR 478 Query: 469 DEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526 ++IER++ L+EGK+AYW+C I+E + ++ + L +I ++HGRM Sbjct: 479 ADIIERVRHACLTEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDLNIGLVHGRMK 538 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 +K++VM +FK+ LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG Sbjct: 539 PAEKQAVMQAFKDNQLHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 598 Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646 S C+LLYH PLSK + RL VL+ + DGF+IA+ DL+ R GE+LG KQ+G+ F I Sbjct: 599 SVASHCVLLYHAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKI 658 Query: 647 AQPELHDSLLEIARKDAKHILTQDPD 672 A L+ ++ A+HI Q PD Sbjct: 659 ADLVRDQRLIPEVQRIARHIHEQYPD 684 >gi|218438140|ref|YP_002376469.1| ATP-dependent DNA helicase RecG [Cyanothece sp. PCC 7424] gi|218170868|gb|ACK69601.1| ATP-dependent DNA helicase RecG [Cyanothece sp. PCC 7424] Length = 818 Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust. Identities = 250/680 (36%), Positives = 394/680 (57%), Gaps = 33/680 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS VG + S L+++ D+LFY+P ID + I+ + VT Sbjct: 124 PLSALVEVGYRKSDLLARL------GLKTVQDILFYYPRDHIDYARQVSITNLVAGETVT 177 Query: 72 ITGYISQHSSFQLQKRRP---YKILLNDGTGEITLLFFYRKT--------EMLKNVFFEG 120 I G + + + F K + +++L+ D TG+I L F+ T E K ++ G Sbjct: 178 IVGTVKRCNCFTSPKNKQLSIFELLIKDSTGQIKLNRFFAGTRFTNRGWQERQKRLYPVG 237 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTGLSVDLFKKII 175 + +G +K+ K + +P +S + + + VY L G+ DL +K + Sbjct: 238 SVVAASGLVKQNKYGFTLENPEIEVLDSLGSHIESLKIGRVLPVYPLTEGVPADLVRKAV 297 Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235 +EAL L L + + DL + + EA IH P + + AR RL +DE Sbjct: 298 IEALGALHQLKDPLPVDLRNEYGLIKLKEAIANIHFPENP---DILTHARRRLVFDEFFF 354 Query: 236 GQIALLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 Q+ L R++ K+ + N G+ +K +PF T +QE I +IL+D+ M Sbjct: 355 LQLGFLQRRQEQKQTQKSASFNPRGEFIEKFNHLLPFPLTNAQERVIGEILEDLKSFTPM 414 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R++QGDVGSGKT+V + A+ AA+++G QA +MAP +LA+QHY + + + VE+ Sbjct: 415 NRLVQGDVGSGKTIVGVFAILAAIQSGYQAALMAPTEVLAEQHYRKLVGWFNLLHLPVEL 474 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 +TG+ A RR+ ++ +G+ +++GTHAL QD + + L LV++DEQHRFGVQQR +L Sbjct: 475 LTGSTKVAKRREIHSQLENGELPLLVGTHALIQDPVNFRNLGLVVIDEQHRFGVQQRARL 534 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 K APHVL MTATPIPRTL LT GD+D+S+I E P GR+PI+T ++ + E Sbjct: 535 LAKGQAPHVLTMTATPIPRTLALTIHGDLDVSQIDELPPGRQPIQTTVLTGKERTQAYEL 594 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKES 532 ++ +++G++AY I P IEE ++ + R+ VE + L E I ++HGRMS I+K+ Sbjct: 595 IRREVAQGRQAYVIFPLIEESEKLDVRAAVEDYKRLSETIFPDFQIGLLHGRMSSIEKDE 654 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 V+++F++ +++++TTVIEVG+DV +A++++IENAE FGL+QLHQLRGRVGRG S C Sbjct: 655 VLNAFRDNQTQIIVSTTVIEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGSHKSYC 714 Query: 593 ILLYHPPLSKN--SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 +L+ S+N S RL VL+ ++DGF I+E DL+ R GE+LG +Q+G+P F +A Sbjct: 715 LLMSS---SRNPESNQRLKVLEQSQDGFFISEMDLRFRGPGEVLGTRQTGLPDFALASLV 771 Query: 651 LHDSLLEIARKDAKHILTQD 670 +L +AR+ A+ ++ D Sbjct: 772 EDQEVLTVAREAAEKVMMAD 791 >gi|332288967|ref|YP_004419819.1| ATP-dependent DNA helicase RecG [Gallibacterium anatis UMN179] gi|330431863|gb|AEC16922.1| ATP-dependent DNA helicase RecG [Gallibacterium anatis UMN179] Length = 694 Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust. Identities = 256/671 (38%), Positives = 386/671 (57%), Gaps = 26/671 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+ GVG S LS++ DLLF+ P + DR + I ++ + T Sbjct: 11 PLTVLSGVGVAMSERLSRL------GIRSVQDLLFHFPLRYEDRTHITPIIDLRPDSYAT 64 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G I Q Q +R + L+DG+ +I L FF M KN F G ++ G+I++ Sbjct: 65 IEG-IVQTCEVQFGRRPMLTVSLSDGSSKIMLRFFNFNAGM-KNSFSSGARVKAFGEIRR 122 Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + M HP Y I HN + +Y GL ++K+ +AL+ +L + Sbjct: 123 GRFMAEMHHPEYRIIHHNEPLTLDENLTPIYPSTEGLKQASWRKLTDQALA---LLDKAT 179 Query: 190 EKDLLQKKSFPS---IAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242 K+LL + PS + A +H P E PA++RLA++ELLA +A+ Sbjct: 180 IKELLPTEFNPSGYDLKSAVQFLHRPPAGTLSEMLEKGEHPAQQRLAFEELLAHNLAMQK 239 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 ++ ++ I + + I Q+ L +PF+PTK+Q +++I QD+ + M+R++QGDV Sbjct: 240 SKQDAQQNSAIALRYQSNIKQQFLATLPFTPTKAQLRVVEEIEQDLQRSQPMMRLIQGDV 299 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVAL+A A++ Q IMAP ILA+QH + + I V + G + Sbjct: 300 GSGKTLVALLASLVALDNQQQVAIMAPTEILAEQHLHNFSHWLEPFGIKVGWLAGKVKGK 359 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R+++L +I G+ ++IGTHALFQ+ ++++ L LVI+DEQHRFGV+QRL L +K Sbjct: 360 KRQQSLAQIQCGETQVVIGTHALFQEQVEFHSLALVIIDEQHRFGVEQRLLLREKGAKNG 419 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL-KV 477 PH L+MTATPIPRTL +T D+D+S I E P GR PIKTV I +R DE+++R+ Sbjct: 420 LYPHQLIMTATPIPRTLAMTVYADLDVSVIDELPPGRTPIKTVAIAEDRRDELVQRVFHA 479 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 + ++ YW+C I+E + ++ L + I ++HGRM +K+ VM Sbjct: 480 CTVDKRQVYWVCTLIDESEVLEAQAAEALAEDLRKALPMLKIGLVHGRMKPQEKQDVMAI 539 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK G +L+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG+ S C+LLY Sbjct: 540 FKAGEIDVLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGQIESFCVLLY 599 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PL K S RL +++++ DGF+IAE+DL+ R GE+LG+KQ+G+ +F +A + LL Sbjct: 600 KAPLGKISRQRLDIMRSSNDGFVIAEKDLEIRGPGEVLGVKQTGVAEFKVANLVRNRRLL 659 Query: 657 EIARKDAKHIL 667 ++ A ++ Sbjct: 660 PAVQRCANQLM 670 >gi|297537284|ref|YP_003673053.1| ATP-dependent DNA helicase RecG [Methylotenera sp. 301] gi|297256631|gb|ADI28476.1| ATP-dependent DNA helicase RecG [Methylotenera sp. 301] Length = 679 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 249/660 (37%), Positives = 379/660 (57%), Gaps = 17/660 (2%) Query: 21 KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80 K +S L +N + N T+ LL + P +ID + + ++ + G I H+ Sbjct: 8 KTFSKPLVANLNKLDVNTTQA--LLLHLPLRYIDETHMTSVRDLRVGEPSQVEGEIV-HA 64 Query: 81 SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140 + R+ L D +G++TL F + + + G K+ V G+++ MVH Sbjct: 65 EVTYKPRKALIARLEDASGQLTLRFLHFYPSQISALKV-GNKLRVYGEVRSGFFGNEMVH 123 Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP 200 P + + + VY GL+ +K I AL + VL E + + Q+ FP Sbjct: 124 PTCKAVGEKTMVAETLTPVYPTVAGLTQVNLRKAIATALKQ-NVLNETLPVSVYQQYQFP 182 Query: 201 SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQF--KKEIGIP 254 S + + +HNP D E T+P +RLA+DELLA Q++ MRK + ++ + P Sbjct: 183 SFSASLKALHNPPPDADLQGLEEKTTPEWQRLAFDELLAQQLS---MRKHYARRRSVDAP 239 Query: 255 INVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313 + K + +L+++PF+ T++Q+ +I D++Q + M R+LQGDVGSGKT+VA +A Sbjct: 240 QFKQSKQLVSALLKSLPFALTQAQQKVAVEIQNDLTQPHPMQRLLQGDVGSGKTIVACMA 299 Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373 ++E+G Q +MAP ILA+QH+ + + I + TG+ + R A++ IA Sbjct: 300 ALQSIESGWQVALMAPTEILAEQHFRKMIGWLTPLNIKIAWHTGSQSKKDREAAMQIIAD 359 Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLLMTATPIP 432 G A ++IGTHALFQ+++Q+ KL L I+DEQHRFGV QRL L QK PH L+MTATPIP Sbjct: 360 GSAQLVIGTHALFQEAVQFKKLGLAIIDEQHRFGVHQRLALRQKGQPEPHQLMMTATPIP 419 Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492 RTL ++ D+D+S I E P GR PI T ++ R DE+++R++ ++G +AYW+CP I Sbjct: 420 RTLSMSYYADLDVSVIDELPPGRTPIVTKLVSDVRRDEILQRVREACAQGNQAYWVCPLI 479 Query: 493 EEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551 EE + + + + + F I ++HGRM +K++VM +F G +LL+ATTVI Sbjct: 480 EESEALQLATANDTYALMQSEFPELKIGLVHGRMKPAEKQAVMAAFSAGETQLLVATTVI 539 Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611 EVG+DV +AS+++IE+AE GL+QLHQLRGRVGRG S+CILLY LS+ + RL V+ Sbjct: 540 EVGVDVPNASLMVIEHAERMGLSQLHQLRGRVGRGAAKSTCILLYQNKLSETARARLKVI 599 Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671 + DGF IA+ DL R GE LG +QSG+P IA LL A+ A ++ + P Sbjct: 600 YESNDGFAIAQADLNLRGPGEYLGTRQSGVPMLKIADLNRDADLLNAAKNMADRLIKEHP 659 >gi|330827858|ref|YP_004390810.1| ATP-dependent DNA helicase RecG [Aeromonas veronii B565] gi|328802994|gb|AEB48193.1| ATP-dependent DNA helicase RecG [Aeromonas veronii B565] Length = 689 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 257/674 (38%), Positives = 381/674 (56%), Gaps = 25/674 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL + +GVG K K+ G A DLLF+ P + DR I ++ Sbjct: 7 PLDSLKGVGSKMQ---EKLERLGLAT---VQDLLFHLPLRYEDRTQVWPIGDLPPGLHGA 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G I Q + + +RR ++DGTG +TL FF T KN GR I G+++ Sbjct: 61 VEGEI-QDTQLVMGRRRMMVCRISDGTGTLTLRFF-NFTAAQKNSLAAGRLIRCFGEVRP 118 Query: 132 LKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 K + M HP Y + + VY GL + + +AL++L + + Sbjct: 119 GKYGLEMAHPEYKLLGEEQAGQTEEALTPVYPTTEGLRQLTLRNLTDQALAQLDL---YG 175 Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242 ++LL +P +A A ++H P + PA++RL +ELLA +++L Sbjct: 176 VEELLPAGLYPHQIELAAALKLLHRPPPSVALPLLESGQHPAQQRLVLEELLAHNLSVLK 235 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R Q + ++ + ++ +++L +PF PT +Q + +I +D+ Q + M+R++QGDV Sbjct: 236 VRAQAQTQLARALKPAPELVEQLLGALPFKPTGAQSRVVTEISKDLQQSHPMMRLVQGDV 295 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+ G Q +MAP +LA+QH K+ + I V + G Sbjct: 296 GSGKTLVAALAALQAIGNGCQVGLMAPTELLAEQHAINFAKWLEPLGIGVGWLAGKQKGK 355 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA---- 418 R ++L I G +++GTHA+FQ+ + + +L LVI+DEQHRFGV QRL L +K Sbjct: 356 AREESLAAIKDGSVKMVVGTHAIFQEQVVFQRLALVIIDEQHRFGVHQRLALREKGEREG 415 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH L+MTATPIPRTL +T+ D+D S I E P GR PI TV +P +R +VIER+K+ Sbjct: 416 VHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPITTVALPDSRRGDVIERVKLA 475 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 +EGK+AYW+C IEE + ++ + L I ++HGRM ++K+ VM+ F Sbjct: 476 CTEGKQAYWVCTLIEESEVLECQAAEDTAAELQNLLPGLHIGLVHGRMRPVEKQRVMEEF 535 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 K G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLYH Sbjct: 536 KAGILQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYH 595 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PLSK + +RL VL+ T DGFLIA+ DL+ R GE+LG +Q+G+ IA L+ Sbjct: 596 APLSKTAQSRLGVLRETNDGFLIAQRDLELRGPGELLGTRQTGLADLKIADLVRDQPLIP 655 Query: 658 IARKDAKHILTQDP 671 +K A+ ++ + P Sbjct: 656 QVQKMARFLMDRHP 669 >gi|238784019|ref|ZP_04628035.1| ATP-dependent DNA helicase recG [Yersinia bercovieri ATCC 43970] gi|238715127|gb|EEQ07123.1| ATP-dependent DNA helicase recG [Yersinia bercovieri ATCC 43970] Length = 693 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 390/676 (57%), Gaps = 26/676 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLST GVG + L+K+ ET DLL + P + DR +I ++ VT Sbjct: 10 PLSTLSGVGASQAGKLAKM-----GLET-IQDLLLHLPLRYEDRTQLYRIGDLQPGLSVT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + S +RR ++DG+G +TL FF M KN G+ + G+ K+ Sbjct: 64 VEGEVLR-SDITFGRRRMMTCQISDGSGVLTLRFFNFNAAM-KNSLSPGKHVIAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLP--VLP 186 + ++HP Y H +++ L E+ VY G+ +K+I +AL+ L V+ Sbjct: 122 GNSGPEIIHPEYRVHG-ENIGVELQESLTPVYPTTEGIRQATLRKLIDQALAMLDTCVIA 180 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALLL 242 E + +L +S S+ EA + +H P + D E PA+ RL +ELLA +++L Sbjct: 181 ELLPIEL--SRSLLSLPEAIHTLHRPPADIQLADLEKGKHPAQRRLIMEELLAHNLSMLA 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R + +P+ E ++ Q+ L +PF+PT++Q+ + +I QDM M+R++QGDV Sbjct: 239 VRAGAQSYRALPLLAEDQLKQRFLAALPFTPTRAQQRVVAEIEQDMMHNFPMMRLIQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKT+VA +A A+ G Q +MAP +LA+QH +++ + + V + G Sbjct: 299 GSGKTVVAALAALRAIAHGKQVALMAPTELLAEQHANTFRQWLEPLGLEVGWLAGKQKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R +A GQ +++GTHA+FQ+ +++ L LVI+DEQHRFGV QRL L +K Sbjct: 359 ARLAQQAAVASGQVSMVVGTHAMFQEQVKFSGLALVIIDEQHRFGVHQRLALWEKGEEQG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R +VI R+K Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDVISRVKNA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L EG++AYW+C IEE + ++ L + ++HGRM +K++VM + Sbjct: 479 CLEEGRQAYWVCTLIEESELLEAQAAEVTCEELKIALPEIKVGLVHGRMKGPEKQAVMLA 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK G +LL+ATTVIEVG+DV +AS++II+N E GLAQLHQLRGRVGRG S C+LLY Sbjct: 539 FKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAVASHCVLLY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PLSK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G +F +A +++ Sbjct: 599 KTPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKVADLLRDQAMI 658 Query: 657 EIARKDAKHILTQDPD 672 ++ A+H+ Q P+ Sbjct: 659 PEVQRIARHLHQQYPE 674 >gi|238759851|ref|ZP_04621007.1| ATP-dependent DNA helicase recG [Yersinia aldovae ATCC 35236] gi|238701912|gb|EEP94473.1| ATP-dependent DNA helicase recG [Yersinia aldovae ATCC 35236] Length = 693 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 258/676 (38%), Positives = 390/676 (57%), Gaps = 26/676 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLST GVG + L+K+ ET DLL + P + DR +I ++ VT Sbjct: 10 PLSTLSGVGASQAGKLAKM-----GLET-IQDLLLHLPLRYEDRTRLYRIGDLMPGLSVT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + S +RR ++DG+G +TL FF M KN G+ + G+ K+ Sbjct: 64 VEGEVLR-SDISFGRRRMMTCQISDGSGVLTLRFFNFNAAM-KNSLSPGKHVIAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRL--PVLP 186 ++HP Y H +++ L E+ +Y G+ +K+I +AL+ L V+ Sbjct: 122 GNTGPEIIHPEYRVHG-ENIGVELQESLTPIYPTTEGIRQATLRKLIDQALAMLDTSVIA 180 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALLL 242 E + +L +S S+ EA + +H P + D E PA+ RL +ELLA +++L Sbjct: 181 ELLPIEL--SRSLISLPEAIHTLHRPPADIQLADLEQGKHPAQRRLIMEELLAHNLSMLA 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R + +P+ E ++ Q+ L +PF+PT +Q + +I QDM+ M+R++QGDV Sbjct: 239 VRAGAQSYRALPLLAEEQLKQRFLAALPFTPTGAQRRVVAEIEQDMTHNFPMMRLIQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+ G Q +MAP +LA+QH +++ + + V + G Sbjct: 299 GSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHAATFRQWLEPLGLEVGWLAGKQKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R E +A GQ +++GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 359 ARIAQQEAVASGQVSMVVGTHAMFQEQVQFSGLALVIIDEQHRFGVHQRLALWEKGEEQG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R +V++R+K Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDVVQRVKNA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L EG++AYW+C IEE + ++ L + ++HGRM +K++VM + Sbjct: 479 CLEEGRQAYWVCTLIEESELLEVQAAEVTCEELKIALPEIKVGLVHGRMKGPEKQAVMLA 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK G +LL+ATTVIEVG+DV +AS++II+N E GLAQLHQLRGRVGRG S C+LLY Sbjct: 539 FKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAVASHCVLLY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PLSK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G +F +A +++ Sbjct: 599 KTPLSKTAQRRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKVADLLRDQAMI 658 Query: 657 EIARKDAKHILTQDPD 672 ++ A+H+ Q P+ Sbjct: 659 PEVQRVARHLHQQYPE 674 >gi|317050129|ref|YP_004117777.1| ATP-dependent DNA helicase RecG [Pantoea sp. At-9b] gi|316951746|gb|ADU71221.1| ATP-dependent DNA helicase RecG [Pantoea sp. At-9b] Length = 703 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 248/669 (37%), Positives = 377/669 (56%), Gaps = 25/669 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLST GVG + L+KI DLL + P + DR +I+++ T Sbjct: 21 PLSTLTGVGASQAAKLAKI------GLYTIQDLLLHLPLRYEDRTQLYRINDLLPGIWAT 74 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + S +RR ++DG+G +T+ FF M KN GR++T G+IK+ Sbjct: 75 VEGEVLS-SEITFGRRRMLVCQISDGSGVLTMRFFNFNAGM-KNSLATGRRVTAYGEIKR 132 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLP--VLP 186 + ++HP Y N L E VY G+ + + +AL+ L + Sbjct: 133 GQRGAEIIHPEYRIQGEHS-NVELQETLTPVYPTTEGIRQATLRNLTDQALTLLETCAIA 191 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNP----RKAKDFEWTSPARERLAYDELLAGQIALLL 242 E + +L S+ +A +H P R ++ PA+ RL +ELLA +++L Sbjct: 192 ELLPPEL--SGGLISLPDALRTLHRPPPDLRLSELETGRHPAQRRLIMEELLAHNLSMLA 249 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R ++ +P+ ++ ++L +PFSPT +Q+ + +I +D++ M+R++QGDV Sbjct: 250 VRAGAQRHHALPMPANHQLVDQLLAALPFSPTGAQQRVVAEIERDLAHDFPMMRLVQGDV 309 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A + G Q +MAP +LA+QH +++ I V + G Sbjct: 310 GSGKTLVAAMAALNVIAYGKQVALMAPTELLAEQHANNFRQWFAPLGIEVGWLAGKQKGK 369 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R+ E IA GQ +++GTHALFQ+ +Q+ + LVI+DEQHRFGV QRL L +K Sbjct: 370 ARQAQQEAIASGQVAMVVGTHALFQEQVQFNGMALVIIDEQHRFGVHQRLALWEKGEEQG 429 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP +R ++I R++ Sbjct: 430 FHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDSRRSDIITRVQSA 489 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 EG++AYW+C IEE + ++ + L + ++HGRM +K++VM +F Sbjct: 490 CHEGRQAYWVCTLIEESELLEAQAAEATWQELKVALPDLQVGLVHGRMKPAEKQAVMQAF 549 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 K +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLY Sbjct: 550 KANEIQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAIASHCVLLYK 609 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PLSK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G +F +A +++ Sbjct: 610 APLSKTAQKRLQVLRDSNDGFVIAQHDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIP 669 Query: 658 IARKDAKHI 666 ++ A+HI Sbjct: 670 EVQRVARHI 678 >gi|238794542|ref|ZP_04638150.1| ATP-dependent DNA helicase recG [Yersinia intermedia ATCC 29909] gi|238726122|gb|EEQ17668.1| ATP-dependent DNA helicase recG [Yersinia intermedia ATCC 29909] Length = 693 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 259/676 (38%), Positives = 390/676 (57%), Gaps = 26/676 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLST GVG + L+K+ ET DLL + P + DR +I ++ VT Sbjct: 10 PLSTLSGVGASQAGKLAKM-----GLET-IQDLLLHLPLRYEDRTRLYRIGDLMPGLSVT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + S +RR ++DG+G +TL FF M KN G+ + G+ K+ Sbjct: 64 VEGEVLR-SDITFGRRRMMTCQISDGSGVLTLRFFNFNAAM-KNSLSPGKHVIAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLP--VLP 186 ++HP Y H +++ L + VY G+ +K+I +AL+ L V+ Sbjct: 122 GNTGPEIIHPEYRVHG-ENIGVELQASLTPVYPTTEGIRQATLRKLIDQALAMLDTCVIA 180 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALLL 242 E + +L +S S+ EA + +H P + D E PA+ RL +ELLA +++L Sbjct: 181 ELLPIEL--SRSLISLPEAIHTLHRPPADIQLADLEQGKHPAQRRLIMEELLAHNLSMLA 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R + +P+ E ++ Q+ L +PF+PT +Q+ + +I QDM+ M+R++QGDV Sbjct: 239 VRAGAQSYRALPLLAEQQLKQRFLAALPFTPTHAQQRVVAEIEQDMAHNFPMMRLIQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+ G Q +MAP +LA+QH +++ + + V + G Sbjct: 299 GSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHATTFRQWLEPLGLQVGWLAGKQKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R E +A GQ +++GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 359 ARIAQQEAVASGQVAMVVGTHAMFQEQVQFSGLALVIIDEQHRFGVHQRLALWEKGEEQG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R +VI+R+K Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDVIQRVKNA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L EG++AYW+C IEE + ++ L + ++HGRM +K++VM + Sbjct: 479 CLEEGRQAYWVCTLIEESEVLEAQAAEVTCEELKIALPEIKVGLVHGRMKGPEKQAVMLA 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK G +LL+ATTVIEVG+DV +AS++II+N E GLAQLHQLRGRVGRG S C+LLY Sbjct: 539 FKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAVASHCVLLY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PLSK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G +F +A +++ Sbjct: 599 KTPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKVADLLRDQAMI 658 Query: 657 EIARKDAKHILTQDPD 672 ++ A+H+ Q P+ Sbjct: 659 PEVQRVARHLHQQYPE 674 >gi|326576486|gb|EGE26394.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis CO72] Length = 698 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 255/676 (37%), Positives = 377/676 (55%), Gaps = 50/676 (7%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ GVG+ + L+++ R D+L + P + DR I ++S V Sbjct: 11 PVTALSGVGQALAGRLAEL------GIHRIFDMLLHLPRDYEDRSRVIAIKDVSHGMSVL 64 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G ++ + + R + L D TGEITL FF+ +L + G KITV G+IK Sbjct: 65 VAGVVT----WVEKNRTGLSVTLEDATGEITLRFFHTYPSLLTTMMV-GAKITVFGEIKV 119 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191 + M HP Y ++ L+ +Y G++ + ++++ AL+ +++ Sbjct: 120 SRYGTQMSHPDYHLTGTKKFESGLLP-IYPTIKGINQNKLRQLVRLALTA-------VQQ 171 Query: 192 DLLQKKS-----------FPSIAEAFNIIHNPRKAKDF-----------EWTSPARERLA 229 D + S + A +H P D + T PA R+ Sbjct: 172 DGIHGLSETQLKAAGVELTGDLLPALKAVHLPEIHADIFSQTALLAGLKDRTHPACRRII 231 Query: 230 YDELLAGQIALLLMRK---QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQ 286 +EL+A Q++ L R Q+K PI+ +A++++ +PF T +Q+ I + + Sbjct: 232 IEELVAHQVSFLFRRNHIYQYKAPKCDPIS---PLAKQLVAGLPFELTAAQKRVIDEAVS 288 Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346 DM+ MLR++QGDVG+GKTLVA + A+++G Q +MAP ILA+QH +K+ + Sbjct: 289 DMATSRPMLRLIQGDVGAGKTLVAAMTACYALDSGWQVAVMAPTEILAEQHLINFQKWFE 348 Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 I V + G R AL+ I Q I++GTHALF D++ + KL LVI+DEQHRF Sbjct: 349 PLGIGVGWLAGKQTAKERTAALDAIRKNQVQIVVGTHALFSDTVVFAKLGLVIIDEQHRF 408 Query: 407 GVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463 GV+QRL+LT K APH L MTATPIPRTL ++ GD+D+S I E P R PI TV I Sbjct: 409 GVEQRLRLTNKGVLGGAPHQLAMTATPIPRTLAMSMYGDMDVSIIDELPPKRTPITTVTI 468 Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523 +R DEVIER++ GK+AYW+CP +EE + +S + L + +IHG Sbjct: 469 NRDRRDEVIERIQNNCQAGKQAYWVCPLVEESSALDVQSAQLTYEDLSDRLDIRTGLIHG 528 Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583 +M DK++VM +FK G LLIATTVIEVG+DV +AS+++IENAE GL+QLHQLRGRV Sbjct: 529 KMKAADKQAVMQAFKAGDIDLLIATTVIEVGVDVPNASLMVIENAERLGLSQLHQLRGRV 588 Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643 GRG S C+LLY PLS RL+VLK++ DGF+IA++DL+ R GE+LG +Q+G Sbjct: 589 GRGSAKSFCVLLYQLPLSPTGIERLNVLKDSTDGFVIAQKDLELRGAGELLGKRQTGDMG 648 Query: 644 FLIAQPELHDSLLEIA 659 + +A ++LLE A Sbjct: 649 YYLADIVRDEALLEAA 664 >gi|157963695|ref|YP_001503729.1| ATP-dependent DNA helicase RecG [Shewanella pealeana ATCC 700345] gi|157848695|gb|ABV89194.1| ATP-dependent DNA helicase RecG [Shewanella pealeana ATCC 700345] Length = 696 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 254/681 (37%), Positives = 388/681 (56%), Gaps = 32/681 (4%) Query: 10 FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69 P++ +GV KK + L+K+ + T DLLF+ P + DR I+ + Sbjct: 11 LVPITDLKGVAKKMAERLAKL------SITTVQDLLFHLPLRYEDRTQVYPIASLYPGSY 64 Query: 70 VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 TI I Q S ++R + D TG +TL FF +N G I G+I Sbjct: 65 GTIEAII-QSSQIIQGRKRMLTCTVRDDTGSLTLRFFNFSVAQ-RNGLEIGMTIRAYGEI 122 Query: 130 KKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLP---- 183 ++ + + ++HP Y + +D+ + VY GL + K+ +AL+ L Sbjct: 123 RRSNHGVEIIHPEYKLISPGEDLQLSDTLTPVYPTTEGLKQASWIKLTEQALAMLDNGGL 182 Query: 184 --VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQ 237 +LP ++ + L K +A I+H P + T PA++RL +ELLA Sbjct: 183 QELLPTNLQPNNLDLK------QALQILHRPNNQVSLFELEQGTHPAQQRLIQEELLAHN 236 Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 +++L +R++ ++ + +N G++ L ++PF PT +Q+ + DI QD+++ M+R+ Sbjct: 237 LSMLRLRQRSNRDSAVSMNATGQLLNPFLASLPFKPTGAQQRVVADITQDLAKHEPMMRL 296 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 +QGDVGSGKTLVA +A A+E+G Q +MAP +LA+QH K + + + V + G Sbjct: 297 VQGDVGSGKTLVAALAALQAIESGYQVAMMAPTELLAEQHAINFKSWFEPLGLKVGWLAG 356 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 + R ++L I G AHI+IGTHA+FQ+ +Q+ KL L+I+DEQHRFGV QRL L +K Sbjct: 357 KLKGKARAQSLADIESGDAHIVIGTHAIFQEQVQFNKLALIIIDEQHRFGVHQRLGLREK 416 Query: 418 ATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 + PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV I R +EV+E Sbjct: 417 GISQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAISEQRREEVLE 476 Query: 474 RLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKE 531 R++ +++ ++AYW+C IEE + ++ + L + ++HGRM +K+ Sbjct: 477 RVRQAAINDKRQAYWVCTLIEESEALECQAAEDTAEELKRALPELKVGLVHGRMKPAEKQ 536 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 +M FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S Sbjct: 537 QIMADFKAGELNLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASH 596 Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 C+LLY PLS + R+ VL+ + DGF+IA++DL+ R GE+LG KQ+G+ IA Sbjct: 597 CVLLYKAPLSATATKRIGVLRQSNDGFVIAQQDLEIRGPGEVLGTKQTGIADMKIADLMR 656 Query: 652 HDSLLEIARKDAKHILTQDPD 672 +L+ +K A H++ Q P+ Sbjct: 657 DQALIPHIQKLAAHVMQQAPN 677 >gi|296112326|ref|YP_003626264.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis RH4] gi|295920020|gb|ADG60371.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis RH4] gi|326561837|gb|EGE12172.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis 7169] gi|326563383|gb|EGE13648.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis 12P80B1] gi|326568942|gb|EGE19011.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis BC1] Length = 698 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 255/676 (37%), Positives = 377/676 (55%), Gaps = 50/676 (7%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ GVG+ + L+++ R D+L + P + DR I ++S V Sbjct: 11 PVTALSGVGQALAGRLAEL------GIHRIFDMLLHLPRDYEDRSRVIAIKDVSHGMSVL 64 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G ++ + + R + L D TGEITL FF+ +L + G KITV G+IK Sbjct: 65 VAGVVT----WVEKNRTGLSVTLEDATGEITLRFFHTYPSLLTTMMV-GAKITVFGEIKV 119 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191 + M HP Y ++ L+ +Y G++ + ++++ AL+ +++ Sbjct: 120 SRYGTQMSHPDYHLTGTKKFESGLLP-IYPTIKGINQNKLRQLVRLALTA-------VQQ 171 Query: 192 DLLQKKS-----------FPSIAEAFNIIHNPRKAKDF-----------EWTSPARERLA 229 D + S + A +H P D + T PA R+ Sbjct: 172 DGIHGLSETQLKAAGVELTGDLLPALKAVHLPEIHADIFSQTALLAGLKDRTHPACRRII 231 Query: 230 YDELLAGQIALLLMRK---QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQ 286 +EL+A Q++ L R Q+K PI+ +A++++ +PF T +Q+ I + + Sbjct: 232 IEELVAHQVSFLFRRNHIYQYKAPKCDPIS---PLAKQLVAGLPFELTAAQKRVIDEAVS 288 Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346 DM+ MLR++QGDVG+GKTLVA + A+++G Q +MAP ILA+QH +K+ + Sbjct: 289 DMATSRPMLRLIQGDVGAGKTLVAAMTACYALDSGWQVAVMAPTEILAEQHLINFQKWFE 348 Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 I V + G R AL+ I Q I++GTHALF D++ + KL LVI+DEQHRF Sbjct: 349 PLGIGVGWLAGKQTAKERTAALDAIRKNQVQIVVGTHALFSDTVVFAKLGLVIIDEQHRF 408 Query: 407 GVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463 GV+QRL+LT K APH L MTATPIPRTL ++ GD+D+S I E P R PI TV I Sbjct: 409 GVEQRLRLTNKGVSGGAPHQLAMTATPIPRTLAMSMYGDMDVSIIDELPPKRTPITTVTI 468 Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523 +R DEVIER++ GK+AYW+CP +EE + +S + L + +IHG Sbjct: 469 NRDRRDEVIERIQNNCQAGKQAYWVCPLVEESSALDVQSAQLTYEDLSDRLDIRTGLIHG 528 Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583 +M DK++VM +FK G LLIATTVIEVG+DV +AS+++IENAE GL+QLHQLRGRV Sbjct: 529 KMKAADKQAVMQAFKAGDIDLLIATTVIEVGVDVPNASLMVIENAERLGLSQLHQLRGRV 588 Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643 GRG S C+LLY PLS RL+VLK++ DGF+IA++DL+ R GE+LG +Q+G Sbjct: 589 GRGSAKSFCVLLYQLPLSPTGIERLNVLKDSTDGFVIAQKDLELRGAGELLGKRQTGDMG 648 Query: 644 FLIAQPELHDSLLEIA 659 + +A ++LLE A Sbjct: 649 YYLADIVRDEALLEAA 664 >gi|221134070|ref|ZP_03560375.1| ATP-dependent DNA helicase RecG [Glaciecola sp. HTCC2999] Length = 695 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 380/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRPKISEISEERIV 70 P++ +GVG K + K+ N G R + D+LF+ P + DR + I ++ Sbjct: 12 PITALKGVGAKVA---EKLQNLG----LRTVQDVLFHLPHRYEDRTHIYNIVDLYHGIHA 64 Query: 71 TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 TI G + Q S +RR I + D +G IT FFY K G ++ G+ + Sbjct: 65 TIQGEVIQ-SDIVFGRRRALVIKIKDASGIITCRFFYFSAAQ-KAQLTPGTQVRAFGEYR 122 Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLP--VL 185 + K+ + VHP Y N DV P+ E+ VY G+ + + +AL L L Sbjct: 123 RGKHALECVHPEYKVVNPNDV-MPVAESLTPVYPTTEGVKQVTLRNLTEQALLALKQGAL 181 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALL 241 E + + ++ S++EA +I+H P E PA++RL +EL+A Q ++L Sbjct: 182 AELMPDGMYAQQL--SLSEALHIVHRPPPDVSLHLFEEGKHPAQQRLILEELMAHQCSVL 239 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 MR + + G I + + Q L+ +PFSPT +Q +++I DM Q M+R++QGD Sbjct: 240 KMRANNEVQPGFAIAQDEALQQAFLQTLPFSPTNAQARVVREIQHDMQQPYPMMRLVQGD 299 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A + AG Q V+MAP +LA+QH + I V + G + Sbjct: 300 VGSGKTLVAALAALNVIAAGYQVVLMAPTELLAEQHAHNFSSWLSPLGIHVGWLAGKLKG 359 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R + L + G ++++GTHA+FQ+ +QY L +VI+DEQHRFGV QRL L +K Sbjct: 360 KARDQVLTALESGDINLLVGTHAVFQEKVQYKNLAMVIIDEQHRFGVHQRLALREKGEQQ 419 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL-K 476 PH L+MTATPIPRTL +T+ D++ S I E P GR P++T+++P R D++I R+ K Sbjct: 420 GRFPHQLVMTATPIPRTLAMTAYADLNTSVIDELPPGRTPVQTIVLPAARRDQIIARVHK 479 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 V ++ YW+C IEE + ++ + F +L T I ++HGRM +K+++M Sbjct: 480 SVTEANRQVYWVCTLIEESEVLQSQAAEDTFIALRTALTDLRIGLVHGRMKPAEKQTIMA 539 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK +L+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+L+ Sbjct: 540 QFKAAELDVLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSIESHCVLM 599 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y LSK + RL VL+++ DGF IA+ DL+ R GEILG KQ+G+ IA L Sbjct: 600 YDGNLSKTATKRLGVLRDSNDGFYIAQMDLEIRGPGEILGTKQTGIADLKIADLVRDGHL 659 Query: 656 LEIARKDAKHILTQDP 671 LE ++ A+H+ T P Sbjct: 660 LEQVQQLAEHLFTHHP 675 >gi|326565924|gb|EGE16085.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis 103P14B1] gi|326575426|gb|EGE25351.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis 101P30B1] gi|326577957|gb|EGE27821.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis O35E] Length = 698 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 255/676 (37%), Positives = 377/676 (55%), Gaps = 50/676 (7%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ GVG+ + L+++ R D+L + P + DR I ++S V Sbjct: 11 PVTALSGVGQALAGRLAEL------GIHRIFDMLLHLPRDYEDRSRVIAIKDVSHGMSVL 64 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G ++ + + R + L D TGEITL FF+ +L + G KITV G+IK Sbjct: 65 VAGVVT----WVEKNRTGLSVTLEDATGEITLRFFHTYPSLLTTMMV-GAKITVFGEIKV 119 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191 + M HP Y ++ L+ +Y G++ + ++++ AL+ +++ Sbjct: 120 GRYGTQMSHPDYHLTGTKKFESGLLP-IYPTIKGINQNKLRQLVRLALTA-------VQQ 171 Query: 192 DLLQKKS-----------FPSIAEAFNIIHNPRKAKDF-----------EWTSPARERLA 229 D + S + A +H P D + T PA R+ Sbjct: 172 DGIHGLSETQLKAAGVELTGDLLPALKAVHLPEIHADIFSQTALLAGLKDRTHPACRRII 231 Query: 230 YDELLAGQIALLLMRK---QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQ 286 +EL+A Q++ L R Q+K PI+ +A++++ +PF T +Q+ I + + Sbjct: 232 IEELVAHQVSFLFRRNHIYQYKAPKCDPIS---PLAKQLVAGLPFELTAAQKRVIDEAVS 288 Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346 DM+ MLR++QGDVG+GKTLVA + A+++G Q +MAP ILA+QH +K+ + Sbjct: 289 DMATSRPMLRLIQGDVGAGKTLVAAMTACYALDSGWQVAVMAPTEILAEQHLINFQKWFE 348 Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 I V + G R AL+ I Q I++GTHALF D++ + KL LVI+DEQHRF Sbjct: 349 PLGIGVGWLAGKQTAKERTAALDAIRKNQVQIVVGTHALFSDTVVFAKLGLVIIDEQHRF 408 Query: 407 GVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463 GV+QRL+LT K APH L MTATPIPRTL ++ GD+D+S I E P R PI TV I Sbjct: 409 GVEQRLRLTNKGVSGGAPHQLAMTATPIPRTLAMSMYGDMDVSIIDELPPKRTPITTVTI 468 Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523 +R DEVIER++ GK+AYW+CP +EE + +S + L + +IHG Sbjct: 469 NRDRRDEVIERIQNNCQAGKQAYWVCPLVEESSALDVQSAQLTYEDLSDRLDIRTGLIHG 528 Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583 +M DK++VM +FK G LLIATTVIEVG+DV +AS+++IENAE GL+QLHQLRGRV Sbjct: 529 KMKAADKQAVMQAFKAGDIDLLIATTVIEVGVDVPNASLMVIENAERLGLSQLHQLRGRV 588 Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643 GRG S C+LLY PLS RL+VLK++ DGF+IA++DL+ R GE+LG +Q+G Sbjct: 589 GRGSAKSFCVLLYQLPLSPTGIERLNVLKDSTDGFVIAQKDLELRGAGELLGKRQTGDMG 648 Query: 644 FLIAQPELHDSLLEIA 659 + +A ++LLE A Sbjct: 649 YYLADIVRDEALLEAA 664 >gi|229586932|ref|YP_002845433.1| ATP-dependent DNA helicase RecG [Rickettsia africae ESF-5] gi|228021982|gb|ACP53690.1| ATP-dependent DNA helicase RecG [Rickettsia africae ESF-5] Length = 713 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 257/644 (39%), Positives = 370/644 (57%), Gaps = 53/644 (8%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLLFY P S+ ++ P ++E+ + I+ T + + + + +P KI ++ TG + Sbjct: 37 DLLFYLPVSYQNKILSPNLTEVRDGDIIQ-TEIVVESINLPKKSSQPLKITASNDTGSLL 95 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAV 159 L+FF++ + N G ++GK++ + + + HP +I VN L IE + Sbjct: 96 LVFFHKPPPFIFNKLQVGTSHIISGKVQFFDHYLQIAHPEFI------VNPKLAKEIEPI 149 Query: 160 YSLPTGLS-----------VDLFKK---------------IIVEALSRLPVLPEWIEKDL 193 YSL LS +++F++ II++ L L V E + Sbjct: 150 YSLTYLLSNKQLYSYIIKAIEIFEEKCKSIEDKEVKDYLDIILQNLQMLHVFHHCEEACM 209 Query: 194 LQKKSFPSIAEAFNIIHN--PRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFK 248 K+S +I++ P+ K F + + A+++LA EL+A QI+LL +R Q Sbjct: 210 PTKQS-----SNVKLINSRLPQPLKGFRNDDLYTNAKKQLAAKELIANQISLLNVRTQIS 264 Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 + G I IL + F T Q+ I++I D S K M+R+LQGDVGSGKTL Sbjct: 265 RRQGNIYPKAVSIQANILNELGFELTSYQKQVIEEIECDQSDKIEMMRLLQGDVGSGKTL 324 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VAL+ M V G QA +MAP +LA QHYEF K +NT I V ++TG + R+ + Sbjct: 325 VALLTMVNVVATGFQATLMAPTDLLANQHYEFFVKALKNTNIRVGLLTGKILGTARKNIM 384 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428 ++ + + I++GTHALFQ+ + + KL +++DEQHRFGVQQRL L K P VL+MTA Sbjct: 385 IQLDNDEIDILVGTHALFQEKVSFKKLGYIVIDEQHRFGVQQRLNLINKGVNPDVLVMTA 444 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488 TPIPR+L LT GD+ ISK+ KP R PI T + +N+I+ +I + L G++ YWI Sbjct: 445 TPIPRSLALTMFGDMTISKLMGKPKSRLPIATNTMSVNKIEHIIVAINKKLIAGERVYWI 504 Query: 489 CPQIEE------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542 CP IE+ +++S V+ RFNS+ + IIHG+M + K+ +M FK G Sbjct: 505 CPLIEQGEKETSEEDSLLMDVMNRFNSIDNIYQGYTGIIHGKMKNEQKDQIMKQFKEGEI 564 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LS 601 K+L+ATTVIEVGID+ +A++IIIENAE FGLAQLHQLRGRVGRG S CILLY+P L Sbjct: 565 KILVATTVIEVGIDIPEATLIIIENAEQFGLAQLHQLRGRVGRGSLQSYCILLYNPKRLR 624 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645 K + R ++K T DGF IAE+DLK R GEILG+KQSG F Sbjct: 625 KVARGRFEIMKQTNDGFYIAEQDLKLRGSGEILGVKQSGEIAFF 668 >gi|238650653|ref|YP_002916505.1| ATP-dependent DNA helicase [Rickettsia peacockii str. Rustic] gi|238624751|gb|ACR47457.1| ATP-dependent DNA helicase [Rickettsia peacockii str. Rustic] Length = 713 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 255/640 (39%), Positives = 371/640 (57%), Gaps = 45/640 (7%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLLFY P S+ ++ P ++E+ ++ I+ T + + + + +P I ++ TG + Sbjct: 37 DLLFYLPVSYQNKILSPNLTEVRDDDIIQ-TEIVVESINLPKKSSQPLTITASNDTGSLL 95 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAV 159 L+FF++ + N G ++GK++ + + + HP +I VN L IE + Sbjct: 96 LVFFHKPPPFIFNKLQVGTSHIISGKVQFFDHYLQIAHPEFI------VNPKLAKEIEPI 149 Query: 160 YSLPTGLS-----------VDLFKK---------------IIVEALSRLPVLPEWIEKDL 193 YSL LS +++F++ II++ L L V E + Sbjct: 150 YSLTYLLSNKQLYSYIIKAIEIFEEKCKSIEDKEVKDYLDIILQNLQMLHVFHHCEEACM 209 Query: 194 LQKKSFPSIAEAFNIIHNPRKA-KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252 K+S ++ + + P K ++ + + A+++LA EL+A QI+LL +R Q + G Sbjct: 210 PTKQS-SNVKLINSRLPQPLKGLRNDDLYTNAKKQLAAKELIANQISLLNVRTQISRRQG 268 Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312 I IL + F T Q+ I++I D S K M+R+LQGDVGSGKTLVAL+ Sbjct: 269 NIYPKAVSIQANILNELGFELTSYQKQVIEEIECDQSDKIEMMRLLQGDVGSGKTLVALL 328 Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372 M V G QA +MAP +LA QHYEF K +NT I V ++TG + A R+ + ++ Sbjct: 329 TMVNVVATGFQATLMAPTDLLANQHYEFFVKALKNTNIRVGLLTGKILGAARKNIMIQLD 388 Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432 + + I++GTHALFQ+ + + KL +++DEQHRFGVQQRL L K P VL+MTATPIP Sbjct: 389 NDEIDILVGTHALFQEKVSFKKLGYIVIDEQHRFGVQQRLNLINKGVNPDVLVMTATPIP 448 Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492 R+L LT GD+ ISK+ KP R PI T + +N+I+ +I + L G++ YWICP I Sbjct: 449 RSLALTMFGDMTISKLMGKPKSRLPIATNTMSVNKIEHIIVAINKKLIAGERVYWICPLI 508 Query: 493 EE------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 E+ +++S V+ RFNS+ + IIHG+M + K+ +M FK G K+L+ Sbjct: 509 EQGGKETPEEDSLLMDVMNRFNSIDNIYQGYTGIIHGKMKNEQKDQIMKQFKEGEIKILV 568 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LSKNSY 605 ATTVIEVGID+ +A++IIIENAE FGLAQLHQLRGRVGRG S CILLY+P L K + Sbjct: 569 ATTVIEVGIDIPEATLIIIENAEQFGLAQLHQLRGRVGRGSLQSYCILLYNPKRLRKVAR 628 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645 R ++K T DGF IAE+DLK R GEILG+KQSG F Sbjct: 629 GRFEIMKQTNDGFYIAEQDLKLRGSGEILGVKQSGEIAFF 668 >gi|320539304|ref|ZP_08038974.1| ATP-dependent DNA helicase [Serratia symbiotica str. Tucson] gi|320030696|gb|EFW12705.1| ATP-dependent DNA helicase [Serratia symbiotica str. Tucson] Length = 704 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 263/692 (38%), Positives = 395/692 (57%), Gaps = 34/692 (4%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 M+ LN + PL+T G+G + L+KI ET DLLF+ P + DR Sbjct: 12 MKGRLLNAV--PLTTLSGIGASQAGKLAKI-----GLET-IQDLLFHLPLRYEDRTRLYP 63 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 I+++ T+ G I + S +RR ++DGTG I +L F+ +KN G Sbjct: 64 INDLLPGIYATVEGEILR-SDTSFGRRRMMTCQISDGTG-ILILRFFNFNAAMKNSLATG 121 Query: 121 RKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEA 178 R++T G+IK+ + +HP Y I S +++ + VY G+ + +K+ +A Sbjct: 122 RRVTAYGEIKRGNHGAESIHPEYRIQGESNEIDLQASLTPVYPTTEGIRQAMLRKLTDQA 181 Query: 179 LSRL------PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFEWTS-PARERL 228 L L +LP + +L+ S+ +A + +H P A D E PA+ RL Sbjct: 182 LELLDTCTITELLPPEVRGELM------SLPQALHTLHRPPPAIQLTDLEQGKHPAQRRL 235 Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288 +ELLA +++L +R + +P+ + ++ + L +PFSPT +QE + DI DM Sbjct: 236 ILEELLAHNLSMLAVRAGAQSYQALPLLPDNRLKKPFLAQLPFSPTSAQERVVADIEADM 295 Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348 + M+R++QGDVGSGKTLVA +A A+ G Q +MAP +LA+QH +++ + Sbjct: 296 QKTFPMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHATNFRQWFEPL 355 Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408 + V + G R E IA GQ +++GTHA+FQ+ +Q+ L L+I+DEQHRFGV Sbjct: 356 GLEVGWLAGKQKGKARIAQQEAIASGQVSMVVGTHAIFQEQVQFNGLALIIIDEQHRFGV 415 Query: 409 QQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464 QRL L +K H L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP Sbjct: 416 HQRLALWEKGEDQGFHAHQLIMTATPIPRTLAMTAYADLDTSVINELPPGRTPVTTVAIP 475 Query: 465 INRIDEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIH 522 R ++I+R+K + EG++AYW+C IE + ++ + L +A++H Sbjct: 476 DTRRADIIQRVKNACMEEGRQAYWVCTLIEGSELLEAQAAEVTWQELKAALPELKVALVH 535 Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582 GRM +K++VM SFK G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGR Sbjct: 536 GRMKAQEKQAVMQSFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGR 595 Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642 VGRG S C+LLY PLSK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G Sbjct: 596 VGRGAVASHCVLLYKTPLSKMAQKRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGST 655 Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 +F +A +++ ++ A+HI Q P+L Sbjct: 656 EFKVADLLRDQAMIPEVQRIARHIHQQHPELA 687 >gi|322835059|ref|YP_004215086.1| ATP-dependent DNA helicase RecG [Rahnella sp. Y9602] gi|321170260|gb|ADW75959.1| ATP-dependent DNA helicase RecG [Rahnella sp. Y9602] Length = 693 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 257/675 (38%), Positives = 392/675 (58%), Gaps = 24/675 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG + L+K+ ET DLL + P + DR I+++ T Sbjct: 10 PLTSLSGVGASQADKLAKL-----GLET-IQDLLLHLPLRYEDRTRLYTINDLQPGIFAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G + + S +RR ++DGTG TL FF M KN GR++T G+IK+ Sbjct: 64 IEGEVLR-SDISFGRRRMLTCQISDGTGMATLRFFNFNAAM-KNSLATGRRVTAYGEIKR 121 Query: 132 LKNRIIMVHPHYIFH--NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187 ++HP Y NS+ V + VY G+ +K+ +AL L +P E Sbjct: 122 GTIGAEIIHPEYRIQGENSEVVLQESLTPVYPTTEGIRQATLRKLTDQALELLDTVPVAE 181 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALLLM 243 + ++L +S + +A +++H P + D E PA+ RL +ELLA +++L + Sbjct: 182 LLPEEL--SRSLIPLPQALHLLHRPPPDIQLADLEKGHHPAQRRLIMEELLAHNLSMLAV 239 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 R + +P++ + ++ + L ++PFSPT +Q + +I QD+++ M+R++QGDVG Sbjct: 240 RAGTQSYKALPLHHDDRLKNQFLASLPFSPTGAQARVVAEIEQDLAKSYPMMRLVQGDVG 299 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKTLVA +A A+ G Q +MAP +LA+QH +++ + I V + G Sbjct: 300 SGKTLVAALAALCAIAQGQQVGLMAPTELLAEQHANNFRQWFEPLGIQVGWLAGKQKGKA 359 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420 R+ + IA GQ +++GTHA+FQ+ + + L LVI+DEQHRFGV QRL L +K Sbjct: 360 RQAQQDAIASGQVSMVVGTHAIFQEQVLFSSLSLVIIDEQHRFGVHQRLALWEKGLQQGF 419 Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I R+K Sbjct: 420 HPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDIISRVKSAC 479 Query: 480 S-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 E ++AYW+C IEE + ++ + L E + +I ++HGRM +K++VM +F Sbjct: 480 EQENRQAYWVCTLIEESEMLEAQAAEATWEGLKEALPALNIGLVHGRMKAQEKQAVMQAF 539 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 K G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLY Sbjct: 540 KQGEVQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 599 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A +++ Sbjct: 600 TPLSKTAQKRLQVLRDSNDGFVIAQQDLEIRGPGELLGTRQTGSAEFKVADLLRDQAMIP 659 Query: 658 IARKDAKHILTQDPD 672 ++ A+++ Q PD Sbjct: 660 DVQRIARYLQQQFPD 674 >gi|15892824|ref|NP_360538.1| ATP-dependent DNA helicase RecG [Rickettsia conorii str. Malish 7] gi|15620008|gb|AAL03439.1| ATP-dependent DNA helicase RecG [Rickettsia conorii str. Malish 7] Length = 713 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 259/653 (39%), Positives = 376/653 (57%), Gaps = 46/653 (7%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLLFY P S+ ++ P ++E+ + I+ T + + + + +P KI ++ TG + Sbjct: 37 DLLFYLPVSYQNKILSPNLTEVRDGDIIQ-TEIVVESINLPKKSSQPLKITASNDTGSLL 95 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAV 159 L+FF++ + N G ++GK++ + + + HP +I VN L IE + Sbjct: 96 LVFFHKPPPFIFNKLQVGTSHIISGKVQFFDHYLQIAHPEFI------VNPKLAKEIEPI 149 Query: 160 YSLPTGLS-----------VDLFKK---------------IIVEALSRLPVLPEWIEKDL 193 YSL LS +++F++ II++ L L V E + Sbjct: 150 YSLTYLLSNKQLYSYIIKAIEIFEEKCKSIEDKEVKDYLDIILQNLQMLHVFHHCEEACM 209 Query: 194 LQKKSFPSIAEAFNIIHNPRKA-KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252 K+S ++ + + P K + + + A+++LA EL+A QI+LL +R Q + G Sbjct: 210 PTKQS-SNVKLINSRLPQPLKGLHNDDLYTNAKKQLAAKELIANQISLLNVRTQISRRQG 268 Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312 I IL + F T Q+ I++I D S K M+R+LQGDVGSGKTLVAL+ Sbjct: 269 NIYPKAVSIQANILNELGFELTSYQKQVIEEIECDQSDKIEMMRLLQGDVGSGKTLVALL 328 Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372 M V G QA +MAP +LA QHYEF K +NT I V ++TG + R+ + ++ Sbjct: 329 TMVNVVATGFQATLMAPTDLLANQHYEFFVKALKNTNIRVGLLTGKILGTARKNIMIQLD 388 Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432 + + I++GTHALFQ+ + + KL +++DEQHRFGVQQRL L K P VL+MTATPIP Sbjct: 389 NDEIDILVGTHALFQEKVSFKKLGYIVIDEQHRFGVQQRLNLINKGVNPDVLVMTATPIP 448 Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492 R+L LT GD+ ISK+ KP R PI T + +N+I+ +I + L G++ YWICP I Sbjct: 449 RSLALTMFGDMTISKLMGKPKSRLPIATNTMSVNKIEHIIVAINKKLIAGERVYWICPLI 508 Query: 493 EE------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 E+ +++S V+ RFNS+ + IIHG+M + K+ +M FK G K+L+ Sbjct: 509 EQGEKETSEEDSLLMDVMNRFNSIDNIYQGYTGIIHGKMKNEQKDQIMKQFKEGEIKILV 568 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LSKNSY 605 ATTVIEVGID+ +A++IIIENAE FGLAQLHQLRGRVGRG S CILLY+P L K + Sbjct: 569 ATTVIEVGIDIPEATLIIIENAEQFGLAQLHQLRGRVGRGSLQSYCILLYNPKRLRKVAR 628 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ-PELHDSLLE 657 R ++K T DGF IAE+DLK R GEILG+KQSG F A + +D LL+ Sbjct: 629 GRFEIMKQTNDGFYIAEQDLKLRGSGEILGVKQSGEIAFFFANLADDYDLLLK 681 >gi|33152902|ref|NP_874255.1| ATP-dependent DNA helicase RecG [Haemophilus ducreyi 35000HP] gi|33149127|gb|AAP96644.1| ATP-dependent DNA helicase RecG [Haemophilus ducreyi 35000HP] Length = 697 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 264/694 (38%), Positives = 391/694 (56%), Gaps = 36/694 (5%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYR 58 M LN + PL + GVG + L + I N DLLF+ P + DR Sbjct: 1 MEKQLLNDI--PLISLAGVGTAIAEKLHRLAIYNVQ--------DLLFHLPIRYEDRTRI 50 Query: 59 PKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118 I+++ VTI G + Q + + +R ++L+DGT +I L FF M KN F Sbjct: 51 TAIADVRPAHFVTIEGQV-QLTEVEYSRRAILAVVLSDGTSKIMLKFFNFNAGM-KNGFA 108 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIV 176 G ++ G+IK+ + + HP Y I HN + +Y+ GL + +K+ Sbjct: 109 VGVRVKAFGEIKRGRFMAEIHHPEYQIIRHNQPLTLAESLTPIYTTTEGLKQNSLRKLTE 168 Query: 177 EALSRLPVLPEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLA 229 +AL+ +L + +LL + P ++ EA ++H P E + PA++RL Sbjct: 169 QALA---LLNKIQIAELLPAQYNPYQYNLTEALQLLHCPPPNISAETLAQGEHPAQKRLI 225 Query: 230 YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289 ++ELLA +A+ +R K+ P++ + ++ + L N+ F PT +Q +I D++ Sbjct: 226 FEELLAHNLAMQQLRLGVKQLYATPLHYQTELKTRFLANLAFQPTPAQTRVTAEIENDLA 285 Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349 Q M+R++QGDVGSGKTLVA +A A++ G Q +MAP ILA+QH ++ + Sbjct: 286 QAVPMMRLVQGDVGSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHATNFTQWLKPFD 345 Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409 I V + G + R L I G+ +IIGTHALFQ+S+ ++ L LVI+DEQHRFGV Sbjct: 346 INVGWLAGKIKGKARTAQLTAIEQGEVQMIIGTHALFQESVAFHDLALVIIDEQHRFGVH 405 Query: 410 QRLKLTQKATA--------PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461 QRL L K PH L+MTATPIPRTL +T D+D S I + P GR PIKT+ Sbjct: 406 QRLTLRAKGAKTINGQEIYPHQLIMTATPIPRTLAMTVYADLDTSLIDQLPPGRTPIKTI 465 Query: 462 IIPINRIDEVIERL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIA 519 +I R EV++R+ +EG++AYW+C I+E + ++ L I Sbjct: 466 VIAEERRAEVVQRVYHACKNEGRQAYWVCTLIDESEVLEAQAAAAIAEDLQGALPDLRIG 525 Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579 ++HGRM +K+++M +FK T LL+ATTVIEVG+DV +AS++IIEN+E GLAQLHQL Sbjct: 526 LVHGRMKPQEKQTIMAAFKAATLDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQL 585 Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639 RGRVGRG S C+L+Y PPL K S RL V+++++DGF IAE+DL+ R GEILG KQ+ Sbjct: 586 RGRVGRGATASHCVLMYKPPLGKISSKRLQVMRDSQDGFYIAEKDLEIRGTGEILGTKQT 645 Query: 640 GMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 GM +F +A L+ + + AK I+++ P L Sbjct: 646 GMAEFKVANLMRDRKLIPLVQHSAKQIISEHPAL 679 >gi|270265246|ref|ZP_06193508.1| hypothetical protein SOD_l00960 [Serratia odorifera 4Rx13] gi|270040880|gb|EFA13982.1| hypothetical protein SOD_l00960 [Serratia odorifera 4Rx13] Length = 693 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 260/679 (38%), Positives = 390/679 (57%), Gaps = 32/679 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+T GVG + L+KI ET DLL + P + DR I+++ T Sbjct: 10 PLTTLSGVGASQAGKLAKI-----GLET-IQDLLLHLPLRYEDRTRLYPINDLLPGIFAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + S +RR ++DGTG +T+ FF M KN GR++T G+IK+ Sbjct: 64 VEGEVLR-SDISFGRRRMLTCQISDGTGLLTMRFFNFNAAM-KNSLAAGRRVTAYGEIKR 121 Query: 132 LKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRL------P 183 + ++HP Y I S +V + VY G+ +K+ +AL L Sbjct: 122 GNHGAEIIHPEYRIQGESSEVELQESLTPVYPTTEGIRQATLRKLTDQALELLDTCAIAE 181 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIA 239 +LP + L+ S+ +A + +H P + +D E PA++RL +ELLA ++ Sbjct: 182 LLPPELSGGLM------SLPQALHTLHRPPPDIQLEDLEQGKHPAQKRLILEELLAHNLS 235 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 +L +R + +P+ + ++ Q+ L +PFSPT +QE + DI DM + M+R++Q Sbjct: 236 MLAVRAGAQSYQALPLMPDDRLKQQFLAELPFSPTGAQERVVADIEADMQKGFPMMRLVQ 295 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKTLVA +A A+ G Q +MAP +LA+QH +++ + + V + G Sbjct: 296 GDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRQWFEPLGLEVGWLAGKQ 355 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R E IA G+ +++GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 356 KGKARIAQQEAIASGKVSMVVGTHAIFQEQVQFSGLALVIIDEQHRFGVHQRLALWEKGE 415 Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 H L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R+ Sbjct: 416 EQGFHAHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRADIIQRV 475 Query: 476 K-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533 K + EG++AYW+C IEE + ++ + L +A++HGRM +K++V Sbjct: 476 KSACMEEGRQAYWVCTLIEESELLEAQAAEATWEELKTALPELKVALVHGRMKAQEKQAV 535 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M +FK G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+ Sbjct: 536 MQAFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCV 595 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 LLY PLSK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G +F +A Sbjct: 596 LLYKTPLSKTAQKRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKVADLLRDQ 655 Query: 654 SLLEIARKDAKHILTQDPD 672 +++ ++ A+HI Q P+ Sbjct: 656 AMIPEVQRVARHIHQQYPE 674 >gi|117618450|ref|YP_854812.1| ATP-dependent DNA helicase RecG [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559857|gb|ABK36805.1| ATP-dependent DNA helicase RecG [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 690 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 256/673 (38%), Positives = 380/673 (56%), Gaps = 25/673 (3%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L + +GVG K K+ G A DLLF+ P + DR I ++ + Sbjct: 9 LDSLKGVGSKMQ---EKLERLGLAT---VQDLLFHLPLRYEDRTQVWPIGDLPPGLHGAV 62 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G I Q + + +RR ++DGTG +TL FF T KN GR + G+++ Sbjct: 63 EGEI-QDTQLVMGRRRMLVCRISDGTGTLTLRFF-NFTAAQKNSLSPGRLMRCFGEVRPG 120 Query: 133 KNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190 K + M HP Y + + VY GL + + +AL++L + + Sbjct: 121 KYGLEMAHPEYKLLGEEQAGQTEEALTPVYPTTEGLRQLTLRSLTDQALAQLDL---YGV 177 Query: 191 KDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLM 243 ++LL +P +A A ++H P + PA++RL +ELLA +++L + Sbjct: 178 EELLPAGLYPQQIDLAAALKLLHRPPPSVALALLESGQHPAQQRLVLEELLAHNLSVLKV 237 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 R Q + ++ + + +++L +PF+PT +Q + +I +D+ Q + M+R++QGDVG Sbjct: 238 RAQAQTQLARALKPAPALVEQLLGALPFTPTGAQNRVVAEIGRDLQQSHPMMRLVQGDVG 297 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKTLVA +A A+ G Q +MAP +LA+QH K+ + I V + G Sbjct: 298 SGKTLVAALAALQAIGNGCQVGLMAPTELLAEQHAINFAKWLEPLGIGVGWLAGKQKGKA 357 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----T 419 R +AL IA G +++GTHA+FQ+ + + +L LVI+DEQHRFGV QRL L +K Sbjct: 358 REEALAAIADGSVKMVVGTHAIFQEQVVFQRLALVIIDEQHRFGVHQRLALREKGEREGV 417 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 PH L+MTATPIPRTL +T+ D+D S I E P GR PI TV +P +R +VIER+++ Sbjct: 418 HPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPITTVALPDSRRQDVIERVRLAC 477 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538 EGK+AYW+C IEE + ++ + L I ++HGRM ++K+ VM+ FK Sbjct: 478 EEGKQAYWVCTLIEESEVLECQAAEDTAAELQNLLPGLHIGLVHGRMRPVEKQRVMEEFK 537 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLYH Sbjct: 538 AGMLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHA 597 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PLSK + +RL VL+ T DGFLIA+ DL+ R GE+LG +Q+G+ IA L+ Sbjct: 598 PLSKTAQSRLGVLRETNDGFLIAQRDLELRGPGELLGTRQTGLADLKIADLVRDQPLIPQ 657 Query: 659 ARKDAKHILTQDP 671 +K A+ ++ + P Sbjct: 658 VQKMARFLMDRHP 670 >gi|307151126|ref|YP_003886510.1| ATP-dependent DNA helicase RecG [Cyanothece sp. PCC 7822] gi|306981354|gb|ADN13235.1| ATP-dependent DNA helicase RecG [Cyanothece sp. PCC 7822] Length = 818 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 245/684 (35%), Positives = 395/684 (57%), Gaps = 29/684 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS VG + S L+++ DLLFY+P ID + I+ + VT Sbjct: 124 PLSALVEVGYRKSDLLARL------GLKTVQDLLFYYPRDHIDYARQVNIANLVAGETVT 177 Query: 72 ITGYISQHSSFQLQKRRP---YKILLNDGTGEITLLFFYRKT--------EMLKNVFFEG 120 I G + + + F K + +++L+ D TG+I L F+ E K ++ G Sbjct: 178 IIGTVKRCNCFTSPKNKQLSIFELLIKDHTGQIKLNRFFAGNRFTNRGWQERQKRLYAVG 237 Query: 121 RKITVTGKIKKLKNRIIMVHPH-----YIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKII 175 + +G +K+ K + + +P + N + + + VY L G+ DL +K + Sbjct: 238 SLVAASGLVKQNKYGLTLENPEIEVLDSLGSNIESLKIGRVLPVYPLTEGVPADLIRKAV 297 Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235 +EA+ + L + + KD+ + EA IH P E + AR RL +DE Sbjct: 298 IEAMGAIAQLKDPLPKDIQNSYGLIKLKEAIANIHYPETP---EILAHARRRLVFDEFFF 354 Query: 236 GQIALLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 Q+ L R++ K+ + N G++ +K +PF+ T +Q+ I +I QD+ M Sbjct: 355 LQLGFLQRRQEQKQTQKSASFNPRGELIEKFNEILPFALTGAQKRVIGEIQQDLKGTTPM 414 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R++QGDVGSGKT+VA+ A+ AA+++G QA +MAP +LA+QHY + + + VE+ Sbjct: 415 NRLVQGDVGSGKTIVAVFAILAAIQSGYQAALMAPTEVLAEQHYRKLVGWFNLLHLPVEL 474 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 +TG+ + RR+ ++ G+ +++GTHAL QD + + L LV++DEQHRFGVQQR +L Sbjct: 475 LTGSTKVSKRREIHAQLESGELPLLVGTHALIQDPVNFRNLGLVVIDEQHRFGVQQRARL 534 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 K APHVL MTATPIPRTL LT GD+D+S+I E P GR+PI+T + + + Sbjct: 535 LAKGQAPHVLTMTATPIPRTLALTIHGDLDVSQIDELPPGRQPIQTTALSGKERTQAYDL 594 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKES 532 ++ +++G++AY I P IEE ++ + R+ VE + L E I ++HGRMS +K+ Sbjct: 595 IRREVAQGRQAYVIFPLIEESEKLDVRAAVEEYKRLSETIFPDFQIGLLHGRMSSSEKDE 654 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +++F++ +++++TTVIEVG+DV +A++++IENAE FGL+QLHQLRGRVGRG S C Sbjct: 655 ALNAFRDNKTQIIVSTTVIEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGSHKSYC 714 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +L+ + +++ RL VL+ ++DGF I+E DL+ R GE+LG +Q+G+P F +A Sbjct: 715 LLM-SSSRTPDAHQRLKVLEQSQDGFFISEMDLRFRGPGEVLGTRQTGLPDFALASLVED 773 Query: 653 DSLLEIARKDAKHILTQDPDLTSV 676 +L IAR+ A+ I+ D L ++ Sbjct: 774 QEVLNIARQAAERIMMADSSLKTM 797 >gi|300310559|ref|YP_003774651.1| TP-dependent DNA helicase RecG protein [Herbaspirillum seropedicae SmR1] gi|300073344|gb|ADJ62743.1| TP-dependent DNA helicase RecG protein [Herbaspirillum seropedicae SmR1] Length = 722 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 255/665 (38%), Positives = 373/665 (56%), Gaps = 28/665 (4%) Query: 28 SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE--RIVTITGYISQHSSFQLQ 85 +K+ G N+ +DL+ + P + D I+E S + V + G +S Q + Sbjct: 49 NKLAKLGLHND---MDLVLHLPLRYEDETSLMSIAEASMRGLQTVQVEGVVSS-CEVQFR 104 Query: 86 KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF 145 RR + + D +G++TL F K + EG ++ V G+++ MVHP Y Sbjct: 105 PRRQLIVTVGDDSGQLTLRFLNFYGSQTKQMA-EGTRLRVRGELRHGFFGAEMVHPSYKV 163 Query: 146 HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW---IEKDLLQKKSFPSI 202 N ++ VY GLS +K I A+SRL +W + +L + + Sbjct: 164 VNEGAPLPDVLTPVYPAGEGLSQAYLRKAIANAMSRL----DWSDTLPPSMLATLNLAAF 219 Query: 203 AEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE 258 + ++HNP D E + PA R+ +DELLA Q++L + + + + V Sbjct: 220 EPSVRLLHNPPPDVDEHALIEKSHPAWIRMKFDELLAQQLSLKRAQAARRAKSARALPVT 279 Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318 G+I +++ R +PF T +Q+ +++I D+ Q M R+LQGDVGSGKT+VA +A A A+ Sbjct: 280 GRITEELTRLLPFQLTGAQQRVLEEIRADLRQSFPMQRLLQGDVGSGKTVVAALAAAQAI 339 Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378 ++G QAV+MAP ILA+QH+ I + + + V ++G+ + + +AL I G A + Sbjct: 340 DSGCQAVLMAPTEILAEQHFRKIAAWMEPLDVGVAWLSGSQKKKEKTEALAHIESGAARL 399 Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA---------TAPHVLLMTAT 429 +IGTHAL QD++Q+ L LVIVDEQHRFGV QRL L K+ PH L+M+AT Sbjct: 400 VIGTHALIQDTVQFENLGLVIVDEQHRFGVGQRLALRNKSFNPADHDSPAVPHQLMMSAT 459 Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489 PIPRTL +T D+++S I E P GR PI T +I NR DEVIER+ EGK+ YW+C Sbjct: 460 PIPRTLAMTYYADLEVSVIDELPPGRSPIVTRVIDQNRRDEVIERVHAAALEGKQIYWVC 519 Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548 P IEE + ++ + +L I ++HGRM ++K+ VM+ F G LL+AT Sbjct: 520 PLIEESEALQLQTATDTHAALSAALPDLQIGLVHGRMKPVEKQMVMEGFSRGAIHLLVAT 579 Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608 TVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG S C+LLY PL + RL Sbjct: 580 TVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGSAASVCLLLYQGPLGGTAKQRL 639 Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668 + ++ T DGF IA DL R GE LG +QSG A L+E AR A+ +L Sbjct: 640 ATMRETTDGFEIARRDLDIRGPGEFLGARQSGEAMLRFADLATDQWLVEKARDTAQALLQ 699 Query: 669 QDPDL 673 PD+ Sbjct: 700 HAPDI 704 >gi|258544403|ref|ZP_05704637.1| ATP-dependent DNA helicase RecG [Cardiobacterium hominis ATCC 15826] gi|258520362|gb|EEV89221.1| ATP-dependent DNA helicase RecG [Cardiobacterium hominis ATCC 15826] Length = 686 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 252/682 (36%), Positives = 375/682 (54%), Gaps = 25/682 (3%) Query: 8 PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67 PL PLS G K + L++ CG ET DLL + P + DR + I+ + + Sbjct: 2 PLNQPLSAISSHGDKTAELLAR---CGV--ET-LRDLLTHLPLRYEDRSHITPIAALRDG 55 Query: 68 RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 V I G + H+ +++R + L D G+ L ++ + F GR+ G Sbjct: 56 ATVQIHGEVL-HADLIQRRKRMLHVTLRDAAGDYCKLVYFNFYPSQQKAFAPGRRGLFYG 114 Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA----VYSLPTGLSVDLFKKIIVEALSRLP 183 K + HP + D P + A VY GL + +I AL+ Sbjct: 115 KAVWTMQGYQIHHPEVQW--LADGETPHLSAQLHPVYPTVKGLGQTRWHDLIRRALAH-- 170 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK--AKD--FEWTSPARERLAYDELLAGQIA 239 LP+ D L + + A +H P + A D E PAR RL +EL+A Q++ Sbjct: 171 ALPQLPADDPLTAMGYCPLPAALTTLHQPDESTAPDALLERNHPARRRLIIEELIAHQLS 230 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 + R++ +++ + E + ++ +P++ T +Q +I D++Q MLR++Q Sbjct: 231 IQNARQRLREQRATALPAEPPLLREFRAALPYTLTAAQSRVCAEIAADLAQATPMLRLVQ 290 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT+VAL A A+ AG QAV M P +LA+QH I++ + V ++T M Sbjct: 291 GDVGSGKTVVALSACLQAIAAGQQAVFMVPTELLAEQHAANIRRLLGALPVRVAVLTSKM 350 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 P A +R L+ IA G A +IIGTHA+FQ+ ++Y +L LV++DEQHRFGV QRL+L K T Sbjct: 351 PAADKRACLQAIADGSADLIIGTHAVFQEQVRYARLALVVIDEQHRFGVHQRLQLQDK-T 409 Query: 420 AP----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 AP H L++TATPIPRTL ++ G++D S I PAGR+PI+T ++ + D VI R+ Sbjct: 410 APGVSVHQLVLTATPIPRTLAMSHYGELDCSIIDALPAGRQPIQTSVVSNQKRDAVIARV 469 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 G++AYW+CP IEE + L +A++HGRM++ +++ M Sbjct: 470 GENCRAGRQAYWVCPLIEESDTLECENAEATAAQLQMMLPDIRVALLHGRMNNDQRQATM 529 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 +F G +LL+ATTVIEVG+DV +A+++IIENAE FGLAQLHQLRGRVGRG S C+L Sbjct: 530 SAFVAGEAQLLVATTVIEVGVDVANATLMIIENAERFGLAQLHQLRGRVGRGSAQSYCLL 589 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 +Y PPL + + RL +++ T DGF IAEEDL R GE+LG +Q+G F +A+ Sbjct: 590 MYQPPLGETAQRRLRIMRETTDGFRIAEEDLAIRGAGELLGTRQTGEASFRVARLPRDGD 649 Query: 655 LLEIARKDAKHILTQDPDLTSV 676 LL + + + + PD +V Sbjct: 650 LLAETERLTRTLRAEHPDYCAV 671 >gi|326571914|gb|EGE21919.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis BC8] Length = 698 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 254/676 (37%), Positives = 376/676 (55%), Gaps = 50/676 (7%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ GVG+ + L+++ R D+L + P + DR I ++S Sbjct: 11 PVTALSGVGQALAGRLAEL------GIHRIFDMLLHLPRDYEDRSRVIAIKDVSHGMSAL 64 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G ++ + + R + L D TGEITL FF+ +L + G KITV G+IK Sbjct: 65 VAGVVT----WVEKNRTGLSVTLEDATGEITLRFFHTYPSLLTTMMV-GAKITVFGEIKV 119 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191 + M HP Y ++ L+ +Y G++ + ++++ AL+ +++ Sbjct: 120 SRYGTQMSHPDYHLTGTKKFESGLLP-IYPTIKGINQNKLRQLVRLALTA-------VQQ 171 Query: 192 DLLQKKS-----------FPSIAEAFNIIHNPRKAKDF-----------EWTSPARERLA 229 D + S + A +H P D + T PA R+ Sbjct: 172 DGIHGLSETQLKAAGVELTGDLLPALKAVHLPEIHADIFSQTALLAGLKDRTHPACRRII 231 Query: 230 YDELLAGQIALLLMRK---QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQ 286 +EL+A Q++ L R Q+K PI+ +A++++ +PF T +Q+ I + + Sbjct: 232 IEELVAHQVSFLFRRNHIYQYKAPKCDPIS---PLAKQLVAGLPFELTAAQKRVIDEAVS 288 Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346 DM+ MLR++QGDVG+GKTLVA + A+++G Q +MAP ILA+QH +K+ + Sbjct: 289 DMATSRPMLRLIQGDVGAGKTLVAAMTACYALDSGWQVAVMAPTEILAEQHLINFQKWFE 348 Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 I V + G R AL+ I Q I++GTHALF D++ + KL LVI+DEQHRF Sbjct: 349 PLGIGVGWLAGKQTAKERTAALDAIRKNQVQIVVGTHALFSDTVVFAKLGLVIIDEQHRF 408 Query: 407 GVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463 GV+QRL+LT K APH L MTATPIPRTL ++ GD+D+S I E P R PI TV I Sbjct: 409 GVEQRLRLTNKGVSGGAPHQLAMTATPIPRTLAMSMYGDMDVSIIDELPPKRTPITTVTI 468 Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523 +R DEVIER++ GK+AYW+CP +EE + +S + L + +IHG Sbjct: 469 NRDRRDEVIERIQNNCQAGKQAYWVCPLVEESSALDVQSAQLTYEDLSDRLDIRTGLIHG 528 Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583 +M DK++VM +FK G LLIATTVIEVG+DV +AS+++IENAE GL+QLHQLRGRV Sbjct: 529 KMKAADKQAVMQAFKAGDIDLLIATTVIEVGVDVPNASLMVIENAERLGLSQLHQLRGRV 588 Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643 GRG S C+LLY PLS RL+VLK++ DGF+IA++DL+ R GE+LG +Q+G Sbjct: 589 GRGSAKSFCVLLYQLPLSPTGIERLNVLKDSTDGFVIAQKDLELRGAGELLGKRQTGDMG 648 Query: 644 FLIAQPELHDSLLEIA 659 + +A ++LLE A Sbjct: 649 YYLADIVRDEALLEAA 664 >gi|307610762|emb|CBX00373.1| ATP-dependent DNA helicase RecG [Legionella pneumophila 130b] Length = 660 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 242/642 (37%), Positives = 375/642 (58%), Gaps = 24/642 (3%) Query: 44 LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITL 103 +LF+ P + DR I ++ I G++ + + + KR + D TG + L Sbjct: 1 MLFHLPYKYQDRTRITPIQDLRSNEWCVIAGHVCK-TEIKYGKRMMLNCYVEDKTGVVKL 59 Query: 104 LFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA---VY 160 FF+ + ++ I G+++ N++ M+HP Y + Q+ +F + E +Y Sbjct: 60 RFFHFNKQQIQ-ALNNSAMIRAFGEVRGFNNQLEMIHPEYQLID-QESDFHVEETLTPIY 117 Query: 161 SLPTGLSVDLFKKIIVEALSR----LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216 GL+ ++++ AL + L L EW+ + LQ+ +F + EA ++HNP Sbjct: 118 PSTQGLTQTRLRQLVKIALEQSEHELHQL-EWMSEKQLQENNFYDLGEAIKLLHNP--PP 174 Query: 217 DFEWTS------PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270 D ++ PA +RL +DELLA Q+++ R+ K I + I ++ + ++P Sbjct: 175 DISLSNLEAGEHPALKRLIFDELLAQQLSMQFARQSRSKLQAPAIFFDNAIHKRFIESLP 234 Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 FS T +Q+ K+I D++Q MLR+LQGDVG+GKT++A +A A+ G Q MAP Sbjct: 235 FSLTNAQQRVFKEISVDLTQSKPMLRLLQGDVGAGKTIIAALAALQAISQGFQVAFMAPT 294 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +L++QH + K+ + I V ++G M R+ L + +I+GTHALFQ+ + Sbjct: 295 DLLSEQHTNSLGKWLEPIGINVLRLSGKMKTTERKNTLAALQDNSCQLIVGTHALFQEQV 354 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDIS 446 ++ +L LVI+DEQHRFGV+QRL L QK PH LLMTATPIPRTL ++ +DIS Sbjct: 355 EFARLGLVIIDEQHRFGVEQRLLLQQKGQLNQLIPHQLLMTATPIPRTLSMSHFAHLDIS 414 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 I E P GR PI T ++ ++ + +IERL+ ++ GK+AYW+C IEE ++ + + Sbjct: 415 VIDELPPGRMPITTAVLNQDKRELIIERLQAAIANGKQAYWVCTLIEESEKLQCMAATDT 474 Query: 507 FNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 L E + + + ++HGRM ++KE+ M +FK G LL+ATTVIEVG+DV +AS++II Sbjct: 475 SKKLQEQLSFARVGLVHGRMKALEKEATMAAFKQGEIDLLVATTVIEVGVDVPNASLMII 534 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625 ENAE GL+QLHQLRGRVGRG S C+LLY PLS+ RL ++++T DGFLI+E+DL Sbjct: 535 ENAERLGLSQLHQLRGRVGRGNNQSHCLLLYQSPLSQQGTERLKIMRSTTDGFLISEKDL 594 Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 + R GEILG +Q+G +F IA + +L I R AK ++ Sbjct: 595 ELRGSGEILGTRQTGFRQFKIANLQRDKTLFAILRPIAKQLV 636 >gi|85060202|ref|YP_455904.1| ATP-dependent DNA helicase RecG [Sodalis glossinidius str. 'morsitans'] gi|84780722|dbj|BAE75499.1| ATP-dependent DNA helicase [Sodalis glossinidius str. 'morsitans'] Length = 694 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 251/675 (37%), Positives = 380/675 (56%), Gaps = 24/675 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+T GVG +SK G N DLL + P+ + DR I E VT Sbjct: 11 PLNTLSGVGPS---LVSKFARLGLEN---LQDLLLHLPARYEDRTKLYPIGEALPGMTVT 64 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + +S ++ L D +G +TL FF+ M KN G+ +T G+I++ Sbjct: 65 VQGEVL-NSDISFGRKCMLTCRLRDDSGVLTLRFFHFNAAM-KNSLSPGQWVTAYGEIRR 122 Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187 ++ ++HP Y I S+ + VY G+ + + +AL L + P E Sbjct: 123 GQHGGEIIHPEYHVINERSEVTLAAALTPVYPTTEGVRQATLRNAVDQALKLLDITPVAE 182 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLM 243 + +L S+ +A ++H P A + PA+ RL +ELLA +++L + Sbjct: 183 LLPPEL--SDGLMSLPDALRMLHRPPPAISLDDLVLGRHPAQRRLILEELLAHNLSMLAI 240 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 R +K+ +P+ + ++Q+ L +PF+PT +Q + +I QD+++ M+R++QGDVG Sbjct: 241 RAGVQKDRALPLRADSLLSQRFLAALPFAPTGAQRRVVAEINQDLARDVPMMRLVQGDVG 300 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKTL A +A A+ G Q +MAP +LA+QH + + + I V + G Sbjct: 301 SGKTLAAALAALCAISDGRQVALMAPTELLAEQHAQNFRDWFAPLGIEVGWLAGKQKGKA 360 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420 R+ E I+ G+ +I+GTHA+FQ+ +++ L LVI+DEQHRFGV QRL L +K Sbjct: 361 RQAQQEAISDGRVSMIVGTHAIFQEQVRFAGLALVIIDEQHRFGVHQRLALWEKGLVQGF 420 Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R E+I+R++ Sbjct: 421 HPHQLIMTATPIPRTLAMTTYADLDTSVIDELPPGRTPVTTVAIPDTRRAEIIQRVRQAC 480 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 L E ++AYW+C IEE ++ + L + ++HGRM ++K+ +M +F Sbjct: 481 LQEQRQAYWVCTLIEESDLLEAQAAEATWQELKSSLPELRVGLVHGRMKALEKQQLMQAF 540 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 K G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLY Sbjct: 541 KAGDVQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 600 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PLSK + +RL VL+N+ DGF+IA+ DL+ R GE+LG +Q+G +F +A ++ Sbjct: 601 SPLSKTAQSRLQVLRNSNDGFVIAQRDLEIRGPGELLGTRQTGNAEFRVANLLRDQGMIP 660 Query: 658 IARKDAKHILTQDPD 672 ++ A+HI PD Sbjct: 661 EVQRLARHIHQHHPD 675 >gi|127514435|ref|YP_001095632.1| ATP-dependent DNA helicase RecG [Shewanella loihica PV-4] gi|126639730|gb|ABO25373.1| ATP-dependent DNA helicase RecG [Shewanella loihica PV-4] Length = 691 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 263/701 (37%), Positives = 408/701 (58%), Gaps = 38/701 (5%) Query: 13 LSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 ++ +GV K + L K+ IN DLLF+ P + DR I+ + T Sbjct: 9 VTELKGVAAKMAQRLEKLGINT-------VQDLLFHLPLRYEDRTQIYPIAALYPGSYGT 61 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G I Q + ++R + D +G ITL FF M +N EG +I G++++ Sbjct: 62 IEGII-QSTQIVQGRKRMLTCTVRDDSGTITLRFFNFSAAM-RNGLEEGERIRAYGEVRR 119 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL------ 182 K ++HP Y N + +F L + +Y GL + ++ +AL+ L Sbjct: 120 GKLHREIIHPEYKMLNGES-DFSLSDTLTPIYPTTEGLKQASWIRLTDQALALLAHGALT 178 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNP-RKAKDF---EWTSPARERLAYDELLAGQI 238 +LP + + L S+ +A ++H P + F + T PA++RL +ELLA + Sbjct: 179 ELLPPQLRPNQL------SLVDALQLLHRPPSEVSPFALEQGTHPAQQRLIQEELLAHNL 232 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 ++L +R + + I + G++ L ++PF PT +Q+ + DI QD+ + + M+R++ Sbjct: 233 SMLQLRARSNHDKAIAMQPTGQLLNPFLASLPFKPTGAQQRVVADITQDLDKAHPMMRLV 292 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKTLVA +A A+E+G Q +MAP +LA+QH + ++ + V + G Sbjct: 293 QGDVGSGKTLVAALAALQAIESGYQVAMMAPTELLAEQHANNFAAWFEHLGLTVGWLAGK 352 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + R ++L++I G+AHI+IGTHA+FQ+ +++ +L L+I+DEQHRFGV QRL L +K Sbjct: 353 LKGKARAQSLQQIKSGEAHIVIGTHAIFQEQVEFNRLALIIIDEQHRFGVHQRLGLREKG 412 Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV I NR EVI+R Sbjct: 413 IRQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAISDNRRGEVIDR 472 Query: 475 LK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532 ++ L +G++AYW+C IEE + ++ + L + +I ++HGRM +K++ Sbjct: 473 VRQAALQDGRQAYWVCTLIEESEVLECQAAEDTAEELKQLLPELAIGLVHGRMKPAEKQA 532 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +MD+FK G+ +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C Sbjct: 533 IMDAFKAGSIQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHC 592 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +LLY PLS + RL VL+++ DGF+IA++DL+ R GE+LG KQ+G+ IA Sbjct: 593 VLLYKAPLSHTATQRLGVLRDSNDGFVIAQKDLEIRGPGEVLGTKQTGIADMKIADLVRD 652 Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693 +L+ +K A+H++ + P+ +V +R L QY +A Sbjct: 653 QALIPHIQKLAQHVMQEVPE--NVDAIVLRWLGERQQYVQA 691 >gi|34581468|ref|ZP_00142948.1| ATP-dependent DNA helicase RecG [Rickettsia sibirica 246] gi|28262853|gb|EAA26357.1| ATP-dependent DNA helicase RecG [Rickettsia sibirica 246] Length = 713 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 255/640 (39%), Positives = 370/640 (57%), Gaps = 45/640 (7%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLLFY P S+ ++ P ++E+ + I+ T + + + + +P KI ++ TG + Sbjct: 37 DLLFYLPVSYQNKILSPNLTEVRDGDIIQ-TEIVVESINLPKKSSQPLKITASNDTGSLL 95 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAV 159 L+FF++ + N G ++GK++ + + + HP +I VN L IE + Sbjct: 96 LVFFHKPPPFIFNKLQVGTSHIISGKVQFFDHYLQIAHPEFI------VNPKLAKEIEPI 149 Query: 160 YSLPTGLS-----------VDLFKK---------------IIVEALSRLPVLPEWIEKDL 193 YSL LS +++F++ II++ L L V E + Sbjct: 150 YSLTYLLSNKQLYSYIIKAIEIFEEKCKSIEDKEVKDYLDIILQNLQMLHVFHHCEEVCM 209 Query: 194 LQKKSFPSIAEAFNIIHNPRKA-KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252 K+S ++ + + P K ++ + + A+++LA EL+A QI+LL +R Q + G Sbjct: 210 PTKQS-SNVKLINSRLPQPLKGLRNDDLYTNAKKQLAAKELIANQISLLNVRTQISRRQG 268 Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312 I IL + F T Q+ I++I D S K M+R+LQGDVGSGKTLVAL+ Sbjct: 269 NIYPKAVSIQANILNELGFELTSYQKQVIEEIECDQSDKIEMMRLLQGDVGSGKTLVALL 328 Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372 M V G QA +MAP +LA QHYEF K +NT I V ++TG + R+ + ++ Sbjct: 329 TMVNVVATGFQATLMAPTDLLANQHYEFFVKALKNTNIRVGLLTGKILGTARKNIMIQLD 388 Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432 + + I++GTHALFQ+ + + KL +++DEQHRFGVQQRL L K P VL+MTATPIP Sbjct: 389 NDEIDILVGTHALFQEKVSFKKLGYIVIDEQHRFGVQQRLNLINKGVNPDVLVMTATPIP 448 Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492 R+L LT GD+ ISK+ KP R PI T + +N+I+ +I + L G++ YWICP I Sbjct: 449 RSLALTMFGDMTISKLMGKPKSRLPIATNTMSVNKIEHIIVAINKKLIAGERVYWICPLI 508 Query: 493 EE------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 E+ +++S V+ RFNS+ + IIHG+M + K+ +M FK G K+L+ Sbjct: 509 EQGEKETSEEDSLLMDVMNRFNSIDNIYQGYTGIIHGKMKNEQKDQIMKQFKEGEIKILV 568 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LSKNSY 605 ATTVIEVGID+ +A++IIIENAE FGLAQLHQLRGRVGRG S CILLY+P L K + Sbjct: 569 ATTVIEVGIDIPEATLIIIENAEQFGLAQLHQLRGRVGRGSLQSYCILLYNPKRLRKVAR 628 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645 R ++K T DGF IAE+DLK R GEILG+KQSG F Sbjct: 629 GRFEIMKQTNDGFYIAEQDLKLRGSGEILGVKQSGEIAFF 668 >gi|271502623|ref|YP_003335649.1| ATP-dependent DNA helicase RecG [Dickeya dadantii Ech586] gi|270346178|gb|ACZ78943.1| ATP-dependent DNA helicase RecG [Dickeya dadantii Ech586] Length = 693 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 256/675 (37%), Positives = 389/675 (57%), Gaps = 24/675 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLST GVG + L+++ ET DLL + P + DR + I+++ T Sbjct: 10 PLSTLAGVGASQAEKLARL-----GLET-VQDLLLHLPLRYEDRTHLYHINDLLPGMYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + S +RR ++DG+G +TL FF M KN G+++ G+I++ Sbjct: 64 VEGDVLR-SDITFGQRRMLTCQISDGSGMLTLRFFNFNAAM-KNSLSPGQRVLAYGEIRR 121 Query: 132 LKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187 K M+HP Y + S V + VY G+ +K+ +AL L P E Sbjct: 122 GKLGGEMIHPEYRVQGESATVELQETLTPVYPTTEGVRQATLRKLTDQALKLLDTHPIDE 181 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNP----RKAKDFEWTSPARERLAYDELLAGQIALLLM 243 + +++ + S+ +A +H P + A+ + PA++RL +ELLA +++L + Sbjct: 182 LLPQEM--RHGLISLPDALRTLHRPPPDVKLAELEQGKHPAQQRLVMEELLAHHLSMLAV 239 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 R ++ + ++ + + Q++L +PFSPT +Q+ + +I QDM+Q M+R++QGDVG Sbjct: 240 RAGAQRHRALALDTKDDLKQQLLAALPFSPTGAQQRVVAEIEQDMNQPFPMMRLVQGDVG 299 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKTLVA +A A+ G Q +MAP +LA+QH +++ + I V + G Sbjct: 300 SGKTLVAALAALRAIAHGKQVALMAPTELLAEQHAANFRRWFEPLGIEVGWLAGKQKGKA 359 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420 R+ E IA GQ ++IGTHA+FQ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 360 RQAQQEAIASGQVSMVIGTHAIFQQQVQFSGLALVIIDEQHRFGVHQRLALWEKGEEQGF 419 Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++IER++ Sbjct: 420 HPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRADIIERVRHAC 479 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 L EG++AYW+C IEE + ++ L ++ ++HGRM +K++VM++F Sbjct: 480 LQEGRQAYWVCTLIEESELLEAQAAEATCQELKAALPELTVGLVHGRMKAQEKQAVMEAF 539 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 K LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLY Sbjct: 540 KTNQLHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 599 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PLSK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G F +A +L+ Sbjct: 600 SPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGNAAFKVADLLRDQALIP 659 Query: 658 IARKDAKHILTQDPD 672 ++ ++HI P+ Sbjct: 660 QVQRVSRHIHEHYPE 674 >gi|120597135|ref|YP_961709.1| ATP-dependent DNA helicase RecG [Shewanella sp. W3-18-1] gi|120557228|gb|ABM23155.1| ATP-dependent DNA helicase RecG [Shewanella sp. W3-18-1] Length = 696 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 255/680 (37%), Positives = 390/680 (57%), Gaps = 30/680 (4%) Query: 10 FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69 P++ +GV KK + L+K+ T DLLF+ P + DR I+ +S Sbjct: 11 LVPITDLKGVAKKVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALSPGSY 64 Query: 70 VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 TI I S Q+ + R ++ N D TG ++L FF +N G I G Sbjct: 65 GTIEAEIQ---STQIIQGRKRMLVCNVRDDTGSLSLRFFNFSVAQ-RNAMQNGLMIRAYG 120 Query: 128 KIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 ++++ ++ +VHP Y + + +DV+ + +Y GL + K+ +AL +L Sbjct: 121 EVRRGSHQAEIVHPEYKVVYPGEDVHLSDTLTPIYPTTEGLKQASWLKLTEQALV---LL 177 Query: 186 PEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAK---DFEWTS-PARERLAYDELLAGQI 238 E +LL + P S+ +A +H P D E PA++RL +ELLA + Sbjct: 178 KEGGLTELLPPQLQPNNISLKQALQTLHRPPAGISQFDLELGQHPAQQRLVQEELLAHNL 237 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 ++L +R++ + + + G++ L +PF PT +Q+ + DI +D+ + + M+R++ Sbjct: 238 SMLRLRQRSNLDAAVTMQATGQLLNPFLAALPFKPTGAQQRVVADIGKDLEKPHPMMRLV 297 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKTLVA +A A+E G Q +MAP +LA+QH + + + V + G Sbjct: 298 QGDVGSGKTLVAAMAALQAIENGYQVAMMAPTELLAEQHATNFAAWFEPLGLKVGWLAGK 357 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + R ++L I G AH++IGTHA+FQ + + KL L+I+DEQHRFGV QRL L +K Sbjct: 358 LKGKARTQSLADIESGAAHMVIGTHAIFQQHVVFNKLALIIIDEQHRFGVHQRLGLREKG 417 Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 + PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV I +R +EV+ER Sbjct: 418 MSQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIADSRRNEVLER 477 Query: 475 LK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532 ++ V+++ ++AYW+C IEE + ++ + L +I ++HGR+ +K+ Sbjct: 478 VRNAVITDQRQAYWVCTLIEESEVLECQAAEDTAEELRLALPDLNIGLVHGRLKSAEKQQ 537 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +M FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C Sbjct: 538 IMADFKAGMIHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAIASHC 597 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +LLY PLS + RLSVL+ + DGF+IA++DL+ R GE+LG KQ+G+ + IA Sbjct: 598 VLLYKAPLSHTATQRLSVLRQSNDGFIIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRD 657 Query: 653 DSLLEIARKDAKHILTQDPD 672 +L+ +K A H++TQ P+ Sbjct: 658 QALIPHIQKLANHVMTQAPE 677 >gi|291619493|ref|YP_003522235.1| RecG [Pantoea ananatis LMG 20103] gi|291154523|gb|ADD79107.1| RecG [Pantoea ananatis LMG 20103] gi|327395802|dbj|BAK13224.1| ATP-dependent DNA helicase RecG [Pantoea ananatis AJ13355] Length = 692 Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust. Identities = 253/675 (37%), Positives = 382/675 (56%), Gaps = 25/675 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLST GVG + L+KI DLL + P + DR I+++ T Sbjct: 10 PLSTLTGVGASQAAKLAKI------GLHTIQDLLLHLPLRYEDRTQLYAINDLLPGIWAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + H+ +RR ++DG+G +++ FF M KN GR++T G+IK+ Sbjct: 64 VEGDVL-HTEITFGRRRMMVCQISDGSGVLSMRFFNFNAGM-KNSLAPGRRVTAYGEIKR 121 Query: 132 LKNRIIMVHPHYIF---HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188 + ++HP Y H++ + L VY G+ + + +AL+ L P Sbjct: 122 GQRGAEIIHPEYRVQGEHSTVTLEETLT-PVYPTTDGIRQATLRNLTDQALTLLENCP-- 178 Query: 189 IEKDLLQKKS--FPSIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALLL 242 I + L Q S S+ EA + +H P K + E PA+ RL +ELLA +++L Sbjct: 179 ITELLPQALSGGLISLPEALHTLHRPPPDVKLSELESGHHPAQRRLILEELLAHNLSMLA 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R ++ +P+ ++ ++L +PFSPT +Q+ + +I +D++ MLR++QGDV Sbjct: 239 VRAGAQRHYALPMPARHTLSDQLLAALPFSPTSAQKRVVAEIEKDLANDFPMLRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A + G Q +MAP +LA+QH +++ + V + G Sbjct: 299 GSGKTLVAALAALNVIAHGKQVAMMAPTELLAEQHAINFRQWLAPLGLEVGWLAGKQKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R+ + IA G +++GTHALFQ+ +++ L LVI+DEQHRFGV QRL L +K Sbjct: 359 ARQAQQDAIASGSVAMVVGTHALFQEQVKFNGLALVIIDEQHRFGVHQRLALWEKGEEQG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP +R E+IER++ Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDSRRSEIIERVQKA 478 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 EG++AYW+C IEE ++ + L+ + ++HGRM +K +VM +F Sbjct: 479 CHEGRQAYWVCTLIEESDLLEAQAAEATWEELNVALPDLRVGLVHGRMKPAEKLAVMQAF 538 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 K +LLIATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLY Sbjct: 539 KANEIQLLIATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 598 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PLSK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G +F +A +++ Sbjct: 599 APLSKTAQKRLQVLRDSNDGFVIAQHDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIP 658 Query: 658 IARKDAKHILTQDPD 672 ++ A+HI P+ Sbjct: 659 EVQRVARHIHQHYPE 673 >gi|157964733|ref|YP_001499557.1| ATP-dependent DNA helicase RecG [Rickettsia massiliae MTU5] gi|157844509|gb|ABV85010.1| ATP-dependent DNA helicase RecG [Rickettsia massiliae MTU5] Length = 713 Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust. Identities = 256/642 (39%), Positives = 371/642 (57%), Gaps = 45/642 (7%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLLFY P S+ ++ P ++E+ + I+ T + + + + +P KI ++ TG + Sbjct: 37 DLLFYLPVSYQNKILSPNLTEVRDGDIIQ-TEIVVESINLPKKSSQPLKITASNDTGSLL 95 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAV 159 L+FF++ + N G ++GK++ + + + HP +I VN L IE + Sbjct: 96 LVFFHKPPPFIFNKLQVGTSHIISGKVQFFDHYLQISHPEFI------VNPKLAKEIEPI 149 Query: 160 YSLPTGLS-----------VDLFKK---------------IIVEALSRLPVLPEWIEKDL 193 YSL LS +++F++ II++ L L V E + Sbjct: 150 YSLTYLLSNKQLYSYIIKAIEIFEEKCKSIEDKEVKEYLDIILQNLQMLHVFRHCEEACM 209 Query: 194 LQKKSFPSIAEAFNIIHNPRKA-KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252 K+S ++ + + P K ++ + + A+++LA EL+A QI+LL +R Q + G Sbjct: 210 PTKQS-SNVKLINSRLPQPLKGLRNDDLYTNAKKQLAAKELIANQISLLNVRTQISRRQG 268 Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312 I IL + F T Q+ I++I D S K M+R+LQGDVGSGKTLVAL+ Sbjct: 269 NIYPKAVSIQANILNELGFELTSYQKQVIEEIECDQSDKIEMMRLLQGDVGSGKTLVALL 328 Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372 M V G QA +MAP +LA QHYEF K +NT I V ++TG + A R+ + ++ Sbjct: 329 TMVNVVVTGFQATLMAPTDLLANQHYEFFVKALKNTNIRVGLLTGKILGAARKNIMIQLD 388 Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432 + + I++GTHALFQ+ + + KL +++DEQHRFGVQQRL L K P VL+MTATPIP Sbjct: 389 NDEIDILVGTHALFQEKVSFKKLGYIVIDEQHRFGVQQRLNLINKGVNPDVLVMTATPIP 448 Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492 R+L LT GD+ ISK+ KP R PI T + +N+I+ +I + L G++ YWICP I Sbjct: 449 RSLALTMFGDMTISKLMGKPKSRLPIATNTMSVNKIEHIIAAINKKLIAGERVYWICPLI 508 Query: 493 EE------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 E+ +++S V+ RFNS+ + IIHG+M + K+ +M FK G K+L+ Sbjct: 509 EQGEKETPEEDSLLMDVMNRFNSIDNIYQGYTGIIHGKMKNEQKDQIMKQFKEGEIKILV 568 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LSKNSY 605 ATTVIEVGID+ A++IIIENAE FGLAQLHQLRGRVGR S CILLY+P L K + Sbjct: 569 ATTVIEVGIDIPAATLIIIENAEQFGLAQLHQLRGRVGRSSLQSYCILLYNPKRLRKVAR 628 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 R ++K T DGF IAE+DLK R GEILG+KQSG +F A Sbjct: 629 GRFEIMKRTNDGFYIAEQDLKLRGSGEILGVKQSGEIEFFFA 670 >gi|284008962|emb|CBA75848.1| ATP-dependent DNA helicase RecG [Arsenophonus nasoniae] Length = 720 Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust. Identities = 260/691 (37%), Positives = 394/691 (57%), Gaps = 28/691 (4%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRP 59 MR L+ + PL++ GVG + L+KI R I DLLF+ P + D+ Sbjct: 28 MRGKLLDAI--PLTSLNGVGASQAEKLNKI-------GLRTIQDLLFHLPLRYQDQTQLY 78 Query: 60 KISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I+++ VT++G I Q + ++R ++DG+G +TL FF T M KN Sbjct: 79 TINDVQPGSTVTVSGKILQ-TKIIFGRKRMMICQISDGSGTLTLRFFNFSTAM-KNSLAA 136 Query: 120 GRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVE 177 G+ I G+I++ ++HP Y I ++ + + +Y + G+ +K+I + Sbjct: 137 GKYIVAYGEIRRGNLGPEIIHPEYKIKPDADQIELQDTLTPIYPITEGIRQITLRKLIDQ 196 Query: 178 ALSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYD 231 AL+ L + E I Q S+ +A I+H P + PA+ RL ++ Sbjct: 197 ALTLLDSCAISELIPAPFNQ--GLISLPQAIKILHRPPPDIPLNILEKGKHPAQRRLIFE 254 Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 ELLA Q+++L +R + ++ P+ E K+ Q++L +P+SPTK+Q+ + +I D+++ Sbjct: 255 ELLAHQLSMLTVRSETQQFSAQPLPAEEKLKQQLLTRLPYSPTKAQQRVVSEIEADLAKA 314 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351 + M+R++QGDVGSGKTLVAL A A+ G QA +MAP +LA+QH +++ + I Sbjct: 315 SPMMRLVQGDVGSGKTLVALFAAIRAIAHGKQAALMAPTELLAEQHANTFRQWLEPLGIQ 374 Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411 V ++G R E IA G+ +IIGTHA+FQ +++ L LVI+DEQHRFGV QR Sbjct: 375 VGWLSGKQKGKSRLNQQEAIAKGKVAMIIGTHAIFQQQVEFNALALVIIDEQHRFGVHQR 434 Query: 412 LKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467 L L +K PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R Sbjct: 435 LALWEKGQQHGIYPHQLIMTATPIPRTLAMTAYADLDNSIIDELPPGRTPVTTVAIPDTR 494 Query: 468 IDEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRM 525 +EVI+R+K E ++ YW+C I++ + ++ L +I ++HGRM Sbjct: 495 RNEVIQRVKKACQIEKRQVYWVCTLIDDSEVLEAQAAQATQEELARALPELNIGLVHGRM 554 Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585 +K+ VM F +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGR Sbjct: 555 KSAEKQKVMADFSANKLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGR 614 Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645 G S C+LLY PL+ + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F Sbjct: 615 GSIASHCVLLYKTPLTYTTKLRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFK 674 Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDLTSV 676 +A LL R A+H+ P+ T+ Sbjct: 675 VADLMRDQDLLPEIRNAAQHLQQHYPNHTNA 705 >gi|307314263|ref|ZP_07593871.1| ATP-dependent DNA helicase RecG [Escherichia coli W] gi|306906086|gb|EFN36605.1| ATP-dependent DNA helicase RecG [Escherichia coli W] gi|315062940|gb|ADT77267.1| ATP-dependent DNA helicase [Escherichia coli W] gi|323376467|gb|ADX48735.1| ATP-dependent DNA helicase RecG [Escherichia coli KO11] Length = 693 Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust. Identities = 258/676 (38%), Positives = 383/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+E G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIEHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM ++K++VM Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPVEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|52425790|ref|YP_088927.1| RecG protein [Mannheimia succiniciproducens MBEL55E] gi|52307842|gb|AAU38342.1| RecG protein [Mannheimia succiniciproducens MBEL55E] Length = 693 Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust. Identities = 261/684 (38%), Positives = 390/684 (57%), Gaps = 34/684 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S LSKI G N DLLF+ P + DR IS++ E+ T Sbjct: 10 PLTSLSGVGAAVSAKLSKI---GINN---LQDLLFHLPIRYEDRTRITPISDLRPEQYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G I Q Q +R + L+DGT +I L FF M +N F G ++ G++K+ Sbjct: 64 IEG-IVQTCEIQFGRRPILTVSLSDGTSKIMLRFFNFNAGM-RNGFQPGARVKAFGEVKR 121 Query: 132 LKNRIIMVHPHY-IFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLP------ 183 + + HP Y I + Q + + +YS GL + +K+ +AL L Sbjct: 122 GRFMAEIHHPEYQIIRDKQPLQLEENLTPIYSATEGLKQNSLRKLTDQALELLDKIQIAE 181 Query: 184 VLPEWIEKDLLQKKSFP-SIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQI 238 +LP+ Q +P S+ EA +H P E T PA+ RL ++ELLA + Sbjct: 182 ILPD-------QFNPYPFSLKEAIRFLHRPPPDVSVESLEKGTHPAQVRLIFEELLAHNL 234 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 A+ +R ++ +P++ + + Q+ L +PF PT +Q +DI +D+++ M+R++ Sbjct: 235 AMQKVRLGTQQFQALPLHFQTDLKQRFLATLPFEPTNAQVRVTQDIERDLAKDYPMMRLV 294 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKTLVA +A A++ G Q +MAP ILA+QH E +++ + I V + G Sbjct: 295 QGDVGSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHAENFRRWFEPFGIEVGWLAGK 354 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK- 417 + R+ LERI + + +++GTHALFQ+ + + L LVI+DEQHRFGV QRL L +K Sbjct: 355 VKGKARQSELERIKNAEVQMVVGTHALFQEEVAFSDLALVIIDEQHRFGVHQRLLLREKG 414 Query: 418 ---ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 PH L+MTATPIPRTL +T D+D S I E P GR PIKT+++ R E++ R Sbjct: 415 EKAGNYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPIKTIVVSEERRAEIVAR 474 Query: 475 L-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532 + +E ++ YW+C I+E + ++ LH I ++HGRM +K++ Sbjct: 475 VHNACTNENRQVYWVCTLIDESEVLEAQAAEATAEDLHRALPHLRIGLVHGRMKPAEKQA 534 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +M SFK LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S C Sbjct: 535 IMASFKAAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFC 594 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +L+Y PPL K S RL VL+ ++DGF+I+E+DL+ R GE+LG KQ+G+ +F +A Sbjct: 595 VLMYKPPLGKISQKRLQVLRESQDGFVISEKDLEIRGPGEVLGTKQTGIAEFKVANLMRD 654 Query: 653 DSLLEIARKDAKHILTQDPDLTSV 676 ++ + A+ ++ + PD+ Sbjct: 655 RKMIPTVQHYARRLIVEYPDVADT 678 >gi|332159668|ref|YP_004296245.1| ATP-dependent DNA helicase RecG [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325663898|gb|ADZ40542.1| ATP-dependent DNA helicase RecG [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860933|emb|CBX71211.1| ATP-dependent DNA helicase recG [Yersinia enterocolitica W22703] Length = 693 Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust. Identities = 258/676 (38%), Positives = 391/676 (57%), Gaps = 26/676 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS GVG + L+K+ ET DLL + P + DR +I ++ VT Sbjct: 10 PLSKLSGVGASQAGKLAKM-----GLET-IQDLLLHLPLRYEDRTRLYRIGDLLPGLSVT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + S +RR ++DG+G +TL FF M KN G+ + G+ K+ Sbjct: 64 VEGEVLR-SDISFGRRRMMTCQISDGSGVLTLRFFNFNAAM-KNSLSPGKHVIAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRL--PVLP 186 ++HP Y H +++ L E+ VY G+ + +K+I +AL+ L V+ Sbjct: 122 GNTGPEIIHPEYRVHG-ENIGVELQESLTPVYPTTEGIRQAILRKLIDQALAMLDSSVIT 180 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALLL 242 E + +L +S S+ EA + +H P + D E PA+ RL +ELLA +++L Sbjct: 181 ELLPIEL--SRSLISLPEAIHTLHRPPADIQLADLEQGKHPAQRRLIMEELLAHNLSMLA 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R + +P+ E ++ ++ L +PF+PT +Q+ + +I QDM+ M+R++QGDV Sbjct: 239 VRAGAQSYRALPLLPEEQLKRRFLAALPFTPTHAQQRVVAEIEQDMTHNFPMMRLIQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+ G Q +MAP +LA+QH +++ + + V + G Sbjct: 299 GSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANTFRQWLEPLGLEVGWLAGKQKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R E +A GQ +++GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 359 ARLAQQEAVASGQVSMVVGTHAMFQEQVQFSGLALVIIDEQHRFGVHQRLALWEKGEEQG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R +VI+R+K Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDVIQRVKNA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L EG++AYW+C IEE + ++ L + ++HGRM +K++VM + Sbjct: 479 CLEEGRQAYWVCTLIEESELLEAQAAEVTCEELKIALPEIKVGLVHGRMKGPEKQAVMLA 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK G +LL+ATTVIEVG+DV +AS++II+N E GLAQLHQLRGRVGRG S C+LLY Sbjct: 539 FKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAVASHCVLLY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PLSK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G +F +A +++ Sbjct: 599 KTPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKVADLLRDQAMI 658 Query: 657 EIARKDAKHILTQDPD 672 ++ A+H+ Q P+ Sbjct: 659 PKVQRVARHLHQQYPE 674 >gi|239947193|ref|ZP_04698946.1| type III restriction enzyme, res subunit family [Rickettsia endosymbiont of Ixodes scapularis] gi|239921469|gb|EER21493.1| type III restriction enzyme, res subunit family [Rickettsia endosymbiont of Ixodes scapularis] Length = 746 Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust. Identities = 257/672 (38%), Positives = 370/672 (55%), Gaps = 76/672 (11%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLLFY P S+ ++ P ++E+ + I+ T + + + + +P KI ++ TG + Sbjct: 37 DLLFYLPVSYQNKILSPNLTEVRDGEIIQ-TEIVIESINLPKKSHQPLKITASNDTGSLL 95 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162 L+FF++ + N G ++GK++ + + + HP +I + IE +YSL Sbjct: 96 LVFFHKPHPFIFNKLKIGTSHIISGKVQFFDHYLQIPHPEFITNPKLAKE---IEPIYSL 152 Query: 163 PTGLS-----------VDLFKK---------------IIVEALSRL----PVLPEWIEKD 192 LS +++F++ II++ L L V+P W++ Sbjct: 153 TYLLSNKQLYSYIIKAIEIFEEKCKSIEDKEVKDYLDIILQNLKMLHVSEAVIP-WLDHG 211 Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252 + P + N K D T A+++LA EL+A QI+LL +R Q + G Sbjct: 212 IHNNNWIPWSSHGMTTPSNTIKLWDD--TESAKKQLAAKELIANQISLLNVRTQISRRQG 269 Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312 I IL + F T Q+ I++I D S K M+R+LQGDVGSGKTLVAL+ Sbjct: 270 NIYPKAAAIQANILNELGFELTSYQKQVIEEIEFDQSDKGEMMRLLQGDVGSGKTLVALL 329 Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372 M V+AG QA +MAP +LA QHYEF K +NT I V ++TG + + R+ + ++ Sbjct: 330 TMVNTVKAGFQATLMAPTDLLANQHYEFFVKALKNTDIRVALLTGKILGSVRKNIMLQLE 389 Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432 G+ I++GTHALFQ+ + + KL +++DEQHRFGVQQRL L K P VL++TATPIP Sbjct: 390 SGEIDILVGTHALFQEKVSFNKLGYIVIDEQHRFGVQQRLNLINKGVNPDVLVITATPIP 449 Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492 R+L LT GD+ ISK+ KP R PI T + +N+I+ +IE + L G++ YWICP I Sbjct: 450 RSLALTMFGDMSISKLMGKPKNRLPIATNTMSVNKIEHIIEAINKKLVVGERVYWICPLI 509 Query: 493 --------------------------------------EEKKESNFRSVVERFNSLHEHF 514 EE+++S V+ RFNS+ + Sbjct: 510 EHGKPPVVIPRLDCGIQKTTYNASNFDWIPLQARGMTPEEEEDSLLMDVMNRFNSIENIY 569 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 IIHG+M + ++ +M FK G K+L+ATTVIEVGIDV +A++IIIENAE FGLA Sbjct: 570 QGYTGIIHGKMKNEQRDQIMKQFKEGEIKILVATTVIEVGIDVPEATLIIIENAEQFGLA 629 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP-LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633 QLHQLRGRVGRG S CILLY+P L K + R ++K T DGF IAE+DLK R GEI Sbjct: 630 QLHQLRGRVGRGSLQSYCILLYNPKRLGKVARGRFEIMKQTNDGFYIAEQDLKLRGSGEI 689 Query: 634 LGIKQSGMPKFL 645 LG+KQSG +F Sbjct: 690 LGVKQSGEIEFF 701 >gi|288572872|ref|ZP_06391229.1| ATP-dependent DNA helicase RecG [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568613|gb|EFC90170.1| ATP-dependent DNA helicase RecG [Dethiosulfovibrio peptidovorans DSM 11002] Length = 687 Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust. Identities = 244/641 (38%), Positives = 373/641 (58%), Gaps = 13/641 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIV-TITGYISQHSSFQLQKR-RPYKILLNDGTGE 100 DLLF+ P + DR + ++ + + +I +S S ++KR + +++DG G Sbjct: 32 DLLFFFPRRYEDRRRIVSLKDLQADTVAASIVTVVSTDSRLSVKKRISLTRAIVSDGHGL 91 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL--IEA 158 + L+F RK L + G ++ + GK+ K V P + +V + I A Sbjct: 92 ASALWFNRKG--LDRLLTSGTRLALYGKVAKEGGMAQFVAPEFEILGEDEVPVQIGGIVA 149 Query: 159 VYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 VYSL GLS +KII L + LP L + + + LL+ + A +H P + Sbjct: 150 VYSLTAGLSDRWLRKIIHRLLDQVLPELEDHMPESLLRDLDLEPLGPAIREMHCPVSPES 209 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKS 276 ++ AR RLA+DEL Q+ L + R+ + G P + + G + +KI ++PF T+ Sbjct: 210 WK---RARRRLAFDELFMLQVGLAIRRRSVGELRGAPRLPLGGPLRRKIEHSLPFELTED 266 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q + +I +DMS M R+LQGDVGSGKT VA +AM AV+ G QA +M P ILAQQ Sbjct: 267 QSRVLAEIGRDMSSDVTMNRLLQGDVGSGKTAVATLAMMQAVDGGTQAALMVPTSILAQQ 326 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 H ++ + + + V ++TG + R+ L+ IA G ++IGTHA+ Q+ + + +L Sbjct: 327 HAIRLRSFLEPHGVKVGLLTGGLSAKERKALLKEIAEGSIDLVIGTHAVIQEDVVFRRLG 386 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 L+++DEQHRFGV QR L K PHVL+MTATPIPRTL L+ GD+ +S I P GR Sbjct: 387 LIVIDEQHRFGVLQRGALGGKGEMPHVLVMTATPIPRTLALSVYGDLSVSVIRTMPEGRI 446 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 P+KT I +++D++ L + G++ +W+CP IEE + N R + ERF+ L F S Sbjct: 447 PVKTRWIGDHKVDDLYGFLDSEMDRGRRIFWVCPLIEESEHLNARPLEERFDFLVRRFGS 506 Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 ++++HGRMS ++ SVM+ F +G LL +TTVIEVG+DV +A++++IE AE FGL+Q Sbjct: 507 ERVSMLHGRMSMEERRSVMEEFASGESPLLASTTVIEVGVDVPEATVMVIEGAERFGLSQ 566 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGR +E S C LL P +++ RL + ++ DGF +AE D+ R GEI G Sbjct: 567 LHQLRGRVGRSDEQSWCFLLGKPG-TQDGNRRLEAICSSSDGFEVAEADMAIRGPGEICG 625 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676 +Q G+ F +A + LL +AR+ A ++ +DP+L S+ Sbjct: 626 TRQHGLTDFKVADLIRDEDLLTLARRIAIDMVGRDPNLDSI 666 >gi|119776507|ref|YP_929247.1| ATP-dependent DNA helicase RecG [Shewanella amazonensis SB2B] gi|119769007|gb|ABM01578.1| ATP-dependent DNA helicase RecG [Shewanella amazonensis SB2B] Length = 691 Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust. Identities = 253/682 (37%), Positives = 387/682 (56%), Gaps = 34/682 (4%) Query: 10 FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69 P++ +GV + + LSK+ N + DLLF+ P + DR I E+ Sbjct: 6 LVPVTELKGVAARVAEKLSKL----GVNTVQ--DLLFHLPLRYEDRTRIYAIDELIPGTT 59 Query: 70 VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 TI + S ++R + D +G +TL FF KN G I G+I Sbjct: 60 ATIEAEVIS-SQIVNGRKRMLTCNVRDASGGLTLRFFNFSMAQ-KNGLQPGMTIRAFGEI 117 Query: 130 KKLKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP---- 183 + K+++ ++HP Y + + + +Y GL + ++ +AL +L Sbjct: 118 RTGKHQLEIIHPEYKLTAAGESPSLADTLTPIYPTTEGLKQASWIRLTAQALEQLEEGGL 177 Query: 184 --VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT-----SPARERLAYDELLAG 236 +LPE ++ + L S+A+A +H P + W PA++RL +ELLA Sbjct: 178 PELLPESLQPNRL------SLADAVRTLHRPPADAEL-WQLEQGQHPAQQRLVQEELLAH 230 Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 +++L +R++ ++ P+ G++ + L ++PF+PT +Q + +I DM++ M+R Sbjct: 231 NLSMLKLRERSNQDAAEPLAATGQLIPRFLESLPFAPTNAQSRVVAEIHADMTKATPMMR 290 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 ++QGDVGSGKTLVA ++ AA+E G Q +MAP +LA+QH ++ + + V + Sbjct: 291 LVQGDVGSGKTLVAALSALAAIENGCQVALMAPTELLAEQHAANFARWFEPLGLKVGWLA 350 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G + R + LE IA G A +I+GTHA+FQ+ + + +L L I+DEQHRFGV QRL L + Sbjct: 351 GKLKGKARTQTLEDIASGAAQMIVGTHAIFQEQVSFSRLALTIIDEQHRFGVHQRLGLRE 410 Query: 417 KATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 K PH L+MTATPIPRTL +T+ D+D S I E P GR PI TV IP R +VI Sbjct: 411 KGIQQGFFPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPITTVAIPDTRRLDVI 470 Query: 473 ERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530 ER++ L + ++AYW+C IEE + ++ + L E I ++HGRM +K Sbjct: 471 ERVRQAALQDKRQAYWVCTLIEESEVLECQAAEDTAGGLKEALPELGIGLVHGRMKGAEK 530 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 +++M FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S Sbjct: 531 QAIMADFKAGKLDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVAS 590 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 C+LLY PLS + RL VL+ + DGF+IA++DL+ R GE+LG +Q+G+ + +A Sbjct: 591 HCVLLYKAPLSFTAQARLGVLRESNDGFVIAQKDLELRGPGEVLGTRQTGLAQMKVADLV 650 Query: 651 LHDSLLEIARKDAKHILTQDPD 672 +L+ +K A+H++TQ PD Sbjct: 651 RDQALIPHIQKLARHLMTQAPD 672 >gi|15602784|ref|NP_245856.1| hypothetical protein PM0919 [Pasteurella multocida subsp. multocida str. Pm70] gi|20139711|sp|Q9CMB4|RECG_PASMU RecName: Full=ATP-dependent DNA helicase recG gi|12721238|gb|AAK03003.1| RecG [Pasteurella multocida subsp. multocida str. Pm70] Length = 693 Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust. Identities = 260/679 (38%), Positives = 388/679 (57%), Gaps = 26/679 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+T GVG S L +I G N DLLF+ P + DR I ++ + T Sbjct: 10 PLTTLSGVGAAISDKLGRI---GIHN---LQDLLFHLPIRYEDRTRITPIHDLRPDAYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G + Q Q KR + L+DGT +I L FF M KN G ++ G++K+ Sbjct: 64 IEGLV-QTCEVQFGKRPILNVSLSDGTSKIMLRFFNFNAGM-KNSLQPGARVKAFGEVKR 121 Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + + HP Y I N+ + + +YS G+ + +K+ +AL+ VL Sbjct: 122 GRFMAEIHHPEYQIIRDNAPLILEETLTPIYSTTEGIKQNSLRKLTDQALA---VLENIQ 178 Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLL 242 ++L + P S+ EA +H P E T PA++RL ++ELLA +A+ Sbjct: 179 IAEILPNEFNPHPFSLKEAIRFLHRPPPDVSLEALEKGTHPAQQRLIFEELLAHNLAMQK 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R ++ P++ + + Q+ L +PF+PT +Q ++I QD++ M+R++QGDV Sbjct: 239 VRIGTQQFSAYPLSYQTDLKQRFLAQLPFTPTDAQVRVTQEIEQDLTHPFPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A++ G Q +MAP ILA+QH +++ ++ I V + G + Sbjct: 299 GSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHATNFRRWFESLGIEVGWLAGKVKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R+ LE+I GQ +++GTHALFQD +++ L LVIVDEQHRFGV QRL L +K Sbjct: 359 ARQTELEKIRTGQVQMVVGTHALFQDEVEFSDLALVIVDEQHRFGVHQRLMLREKGKQAD 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T D+D S I E P GR PI TV I R EVI R+ Sbjct: 419 HYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEERRAEVIARVNHA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 ++E ++AYW+C I+E + ++ L + I ++HGRM +K+ +M + Sbjct: 479 CVNEKRQAYWVCTLIDESEVLEAQAAEAIAEDLRKILPHLRIGLVHGRMKPAEKQDIMQA 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S C+L+Y Sbjct: 539 FKQAEIDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGTTASFCVLMY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PPL K S RL VL++T+DGF+I+E+DL+ R GE+LG KQ+G+ +F +A ++ Sbjct: 599 KPPLGKISQKRLQVLRDTQDGFVISEKDLEIRGPGEVLGTKQTGVAEFKVANLMRDRKMI 658 Query: 657 EIARKDAKHILTQDPDLTS 675 + A+ ++ + P++ + Sbjct: 659 PTVQYYARRLIVEQPEVAT 677 >gi|329296823|ref|ZP_08254159.1| ATP-dependent DNA helicase RecG [Plautia stali symbiont] Length = 692 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 248/678 (36%), Positives = 376/678 (55%), Gaps = 31/678 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLST GVG + L+K+ DLL + P + DR KI+++ T Sbjct: 10 PLSTLTGVGASQASKLAKL------GLFTIQDLLLHLPLRYEDRTQLYKINDLLPGIWAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + HS +RR ++DG+G +T+ FF M KN GR++T G+IK+ Sbjct: 64 VEGEVL-HSEITFGRRRMLVCQISDGSGVLTMRFFNFNACM-KNSLAPGRRVTAYGEIKR 121 Query: 132 LKNRIIMVHPHYIFHNS------QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 + ++HP Y Q P VY G+ + + +AL+ L Sbjct: 122 GQRGAEIIHPEYRVQGELGGVELQKTLTP----VYPTTEGIRQATLRNLTDQALTLLESC 177 Query: 186 P--EWIEKDLLQKKSFPSIAEAFNIIHNP----RKAKDFEWTSPARERLAYDELLAGQIA 239 P E + +L S+ EA +H P R ++ PA++RL +ELLA ++ Sbjct: 178 PIAELLPPEL--SGGLISLPEALRTLHRPPPDLRLSELETGRHPAQKRLILEELLAHNLS 235 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 +L +R ++ +P+ ++ K+L +PFSPT +Q + +I +D++ M+R++Q Sbjct: 236 MLAVRAGAQRHHALPMPARHELVDKLLAALPFSPTAAQRRVVAEIERDLAHDFPMMRLVQ 295 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKTLVA +A + G Q +MAP +LA+QH +++ + V + G Sbjct: 296 GDVGSGKTLVAALAALNVIAWGKQVTLMAPTELLAEQHASNFRQWFAPLGVEVGWLAGKQ 355 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + R E IA GQ +++GTHALFQ+ +++ + LVI+DEQHRFGV QRL L +K Sbjct: 356 KRKAREAQQEAIASGQVAMVVGTHALFQEQVKFNGMALVIIDEQHRFGVHQRLALWEKGE 415 Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 PH L+MTATPIPRTL +T+ D++ S I E P GR P+ TV IP R ++I R+ Sbjct: 416 EQGFHPHQLIMTATPIPRTLAMTAYADLNTSTIDELPPGRTPVTTVAIPDTRRSDIITRV 475 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 + EG++AYW+C I+E ++ + L + ++HGRM +K++VM Sbjct: 476 QSACHEGRQAYWVCTLIDESDVLEVQAAEATWQELKVALPDLQVGLVHGRMKPAEKQAVM 535 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 +FK +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGR S C+L Sbjct: 536 AAFKANEIQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRSAVASHCVL 595 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 LY PLSK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G +F +A S Sbjct: 596 LYKAPLSKTAQKRLQVLRDSNDGFVIAQHDLEIRGPGELLGTRQTGNAEFKVADLLRDQS 655 Query: 655 LLEIARKDAKHILTQDPD 672 ++ ++ A+HI P+ Sbjct: 656 MIPEVQRVARHIHQHYPE 673 >gi|260599949|ref|YP_003212520.1| ATP-dependent DNA helicase RecG [Cronobacter turicensis z3032] gi|260219126|emb|CBA34481.1| ATP-dependent DNA helicase recG [Cronobacter turicensis z3032] Length = 693 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 261/688 (37%), Positives = 390/688 (56%), Gaps = 30/688 (4%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MR L+ + PLS+ GVG S L+KI DLL + P + DR + Sbjct: 1 MRGRLLDAV--PLSSLTGVGASQSAKLAKI------GLHTIQDLLLHFPLRYEDRTHLYP 52 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 I+++ T+ G + + + RR ++DGTG +T+ FF M KN G Sbjct: 53 INDLLPGVYATVEGEVL-NCNITFGGRRMMTCQISDGTGILTMRFFNFNAAM-KNSLATG 110 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIV 176 R++ G+ K+ K M+HP Y DV+ P ++ VY G+ +K+ Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRIQG--DVSAPEMQETLTPVYPTTEGVRQATLRKLTD 168 Query: 177 EALSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNP---RKAKDFE-WTSPARERLAY 230 +AL L + E + +L Q S+ EA +H P K +D E PA+ RL Sbjct: 169 QALELLETCAITELLPPELSQ--GLMSLPEALRTLHRPPPDMKLEDLESGQHPAQRRLIL 226 Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290 +ELLA +++L +R ++ + + ++ +++L ++PF PT +Q + +I +DM+ Sbjct: 227 EELLAHNLSMLALRAGAQRYHALSLAARDELKEQLLASLPFKPTGAQARVVAEIERDMAL 286 Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350 M+R++QGDVGSGKTLVA +A A+ G Q +MAP +LA+QH + + I Sbjct: 287 DIPMMRLVQGDVGSGKTLVAALAALRAIANGKQVALMAPTELLAEQHANNFRNWFSPLGI 346 Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410 V + G R+ + IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV Q Sbjct: 347 EVGWLAGKQKGKARQAQQDAIASGQVSMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQ 406 Query: 411 RLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466 RL L +K PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP Sbjct: 407 RLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIYELPPGRTPVTTVAIPDT 466 Query: 467 RIDEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGR 524 R ++IER++ L EG++AYW+C IEE + ++ + L ++ ++HGR Sbjct: 467 RRSDIIERVRSACLEEGRQAYWVCTLIEESELLEAQAAEATWEELKITLPELNVGLVHGR 526 Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584 M +K++VM +FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVG Sbjct: 527 MKPAEKQAVMQAFKQGEMHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVG 586 Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644 RG S C+LLY PLS+ + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F Sbjct: 587 RGAVASHCVLLYKSPLSRTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEF 646 Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPD 672 +A SL+ ++ A+HI + P+ Sbjct: 647 KVADLLRDQSLIPEVQRIARHIHERYPE 674 >gi|294638300|ref|ZP_06716553.1| ATP-dependent DNA helicase RecG [Edwardsiella tarda ATCC 23685] gi|291088553|gb|EFE21114.1| ATP-dependent DNA helicase RecG [Edwardsiella tarda ATCC 23685] Length = 693 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 253/675 (37%), Positives = 386/675 (57%), Gaps = 26/675 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG + L+K+ DLL + P + DR +I E+ ++VT Sbjct: 10 PLTSLSGVGASQAGKLAKL------GLVTIQDLLLHLPLRYEDRTRLYRIGELQPGQVVT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G + + + +RR ++DG+G +TL FF M KN G+++ G+IK+ Sbjct: 64 IEGEVLR-TDVAFGRRRMLTSQISDGSGLLTLRFFNFSAAM-KNSLAPGKRVLAYGEIKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLPV--LP 186 + ++HP Y D L A VY G+ +K+ +AL+ L + +P Sbjct: 122 GHHGGEIIHPEYRIQGD-DAPIELQAALTPVYPTTEGVRQATLRKLSDQALALLDITPIP 180 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNP----RKAKDFEWTSPARERLAYDELLAGQIALLL 242 E + + L Q S+ EA + +H P R + PA+ RL +ELLA +++L Sbjct: 181 ELLPESLGQ--GLISLPEALHTLHRPPADIRLEDLAQGRHPAQRRLILEELLAHHLSMLA 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R +++ + + + Q++L +PF+PT +Q + DI DM++ M+R++QGDV Sbjct: 239 VRAGNQRQHALALGANDNLKQRLLAALPFTPTAAQWRVLADIETDMAKSVPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 G GKTLVA +A A+ G Q +MAP +LA+QH + + + + V + G Sbjct: 299 GCGKTLVAAMAALRAIANGHQVALMAPTELLAEQHAANFRHWFEPLGLRVGWLAGKQKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R+ + IA G+ +++GTHALFQ+ +Q+ L LVI+DEQHRFGV QRL L +K A Sbjct: 359 ARQTQMAAIAAGEVDMVVGTHALFQEQVQFADLALVIIDEQHRFGVHQRLALWEKGQAQG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV I R ++++ER++ Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIADTRREQILERVRHA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L+E ++AYW+C IEE + ++ +L + IA++HGRM DK+ VM Sbjct: 479 CLTEKRQAYWVCTLIEESEVLEAQAAEATAEALSQQLPELRIALVHGRMKAADKQQVMAR 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLY Sbjct: 539 FKAGEIDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PLS+ + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G +F +A +L+ Sbjct: 599 KAPLSQTAQQRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGNAEFRVADLLRDQALI 658 Query: 657 EIARKDAKHILTQDP 671 ++ A+H+ + P Sbjct: 659 PEVQRIARHLHSAYP 673 >gi|251791703|ref|YP_003006424.1| ATP-dependent DNA helicase RecG [Dickeya zeae Ech1591] gi|247540324|gb|ACT08945.1| ATP-dependent DNA helicase RecG [Dickeya zeae Ech1591] Length = 693 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 254/675 (37%), Positives = 389/675 (57%), Gaps = 24/675 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLST GVG + L+++ ET DLL + P + DR + I+++ T Sbjct: 10 PLSTLAGVGASQAEKLARL-----GLET-VQDLLLHLPLRYEDRTHLYLINDVLPGMYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + S +RR ++DG+G +TL FF M KN G+++ G+I++ Sbjct: 64 VEGEVLR-SDITFGQRRMLTCQISDGSGMLTLRFFNFNAAM-KNSLSPGQRVLAYGEIRR 121 Query: 132 LKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187 K M+HP Y + S V + VY G+ +K+ +AL L P E Sbjct: 122 GKLGGEMIHPEYRVQGESTTVELQETLTPVYPTTEGVRQATLRKLTDQALKLLDTHPIDE 181 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNP----RKAKDFEWTSPARERLAYDELLAGQIALLLM 243 + +++ + S+ +A +H P + A+ + PA++RL +ELLA +++L + Sbjct: 182 LLPQEM--RHGLISLPDALRTLHRPPPDVKLAELEQGKHPAQQRLVMEELLAHHLSMLAV 239 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 R ++ + ++ + + Q++L +PFSPT +Q + +I QDM++ M+R++QGDVG Sbjct: 240 RAGAQRHRALALDTKDSLKQQLLAALPFSPTGAQHRVVAEIEQDMNKPFPMMRLVQGDVG 299 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKTLVA +A A+ G Q +MAP +LA+QH +++ + I V + G Sbjct: 300 SGKTLVAALAALRAIAHGKQVALMAPTELLAEQHAANFRRWFEPLGIEVGWLAGKQKGKA 359 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420 R+ E IA GQ +++GTHA+FQ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 360 RQAQQEAIASGQVAMVVGTHAIFQQQVQFNGLALVIIDEQHRFGVHQRLALWEKGEEQGF 419 Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R D++I+R++ Sbjct: 420 HPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRDDIIQRVRNAC 479 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 L EG++AYW+C IEE + ++ L ++ ++HGRM +K++VM++F Sbjct: 480 LQEGRQAYWVCTLIEESELLEAQAAEATCQELKAALPELAVGLVHGRMKAQEKQAVMEAF 539 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 K LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLY Sbjct: 540 KTNQLHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 599 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PLSK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G F +A +L+ Sbjct: 600 SPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGNAAFKVADLLRDQALIP 659 Query: 658 IARKDAKHILTQDPD 672 ++ ++HI P+ Sbjct: 660 QVQRVSRHIHEHYPE 674 >gi|145300961|ref|YP_001143802.1| ATP-dependent DNA helicase RecG [Aeromonas salmonicida subsp. salmonicida A449] gi|142853733|gb|ABO92054.1| ATP-dependent DNA helicase RecG [Aeromonas salmonicida subsp. salmonicida A449] Length = 690 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 256/673 (38%), Positives = 376/673 (55%), Gaps = 25/673 (3%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L + +GVG K K+ G A DLLF+ P + DR I ++ + Sbjct: 9 LDSLKGVGSKMQ---EKLERLGLAT---VQDLLFHLPLRYEDRTQVWPIGDLPPGLHGAV 62 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G I Q + + +RR ++DGTG +TL FF T KN +GR I G+++ Sbjct: 63 EGEI-QDTQLVMGRRRMLVCRISDGTGTLTLRFF-NFTAAQKNSLGQGRLIRCFGEVRPG 120 Query: 133 KNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190 K + M HP Y + + VY GL + + +AL++L + + Sbjct: 121 KYGLEMAHPEYKLLGEEQAGQTEEALTPVYPTTEGLRQLTLRSLTDQALAQLDL---YGV 177 Query: 191 KDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLM 243 ++LL +P +A A ++H P + PA++RL +ELLA +++L + Sbjct: 178 EELLPAGLYPQQIDLAAALRLLHRPPPSVALALLESGQHPAQQRLVLEELLAHNLSVLKV 237 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 R Q + ++ + + +++L +PF PT +Q + +I QD+ + M+R++QGDVG Sbjct: 238 RAQAQTQLARALKPAPALVKQLLEALPFKPTGAQNRVVAEINQDLQRSYPMMRLVQGDVG 297 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 SGKTLVAALAALQAIGNGCQVGLMAPTELLAEQHAINFANWLEPLGIGVGWLAGKQKGKA 357 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----T 419 R L IA G +++GTHA+FQ+ + + +L LVI+DEQHRFGV QRL L +K Sbjct: 358 RETQLAAIADGSVKMVVGTHAIFQEQVVFQRLALVIIDEQHRFGVHQRLALREKGEREGV 417 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 PH L+MTATPIPRTL +T+ D+D S I E P GR PI TV +P +R +VIER+K+ Sbjct: 418 HPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPITTVALPDSRRPDVIERVKLAC 477 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538 EGK+AYW+C IEE + ++ + L I ++HGRM ++K+ VM+ FK Sbjct: 478 EEGKQAYWVCTLIEESEVLECQAAEDTAAELQNQLPGLHIGLVHGRMRPVEKQRVMEEFK 537 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLYH Sbjct: 538 AGILQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHA 597 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PLSK + +RL VL+ T DGFLIA+ DL+ R GE+LG +Q+G+ IA L+ Sbjct: 598 PLSKTAQSRLGVLRETNDGFLIAQRDLELRGPGELLGTRQTGLADLKIADLVRDQPLIPQ 657 Query: 659 ARKDAKHILTQDP 671 +K A+ ++ + P Sbjct: 658 VQKMARFLMDRHP 670 >gi|326563268|gb|EGE13535.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis 46P47B1] gi|326569240|gb|EGE19301.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis BC7] Length = 698 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 253/676 (37%), Positives = 375/676 (55%), Gaps = 50/676 (7%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ GVG+ + L+++ R D+L + P + DR I ++ Sbjct: 11 PVTALSGVGQALAGRLAEL------GIHRIFDMLLHLPRDYEDRSRVIAIKDVHHGMSAL 64 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G ++ + + R + L D TGEITL FF+ +L + G KITV G+IK Sbjct: 65 VAGVVT----WVEKNRTGLSVTLEDATGEITLRFFHTYPSLLTTMMV-GAKITVFGEIKV 119 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191 + M HP Y ++ L+ +Y G++ + ++++ AL+ +++ Sbjct: 120 SRYGTQMSHPDYHLTGTKKFESGLLP-IYPTIKGINQNKLRQLVRLALTA-------VQQ 171 Query: 192 DLLQKKS-----------FPSIAEAFNIIHNPRKAKDF-----------EWTSPARERLA 229 D + S + A +H P D + T PA R+ Sbjct: 172 DGIHGLSETQLKAAGVELTGDLLPALKAVHLPEIHADIFSQTALLAGLKDRTHPACRRII 231 Query: 230 YDELLAGQIALLLMRK---QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQ 286 +EL+A Q++ L R Q+K PI+ +A++++ +PF T +Q+ I + + Sbjct: 232 IEELVAHQVSFLFRRNHIYQYKAPKCDPIS---PLAKQLVAGLPFELTAAQKRVIDEAVS 288 Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346 DM+ MLR++QGDVG+GKTLVA + A+++G Q +MAP ILA+QH +K+ + Sbjct: 289 DMATSRPMLRLIQGDVGAGKTLVAAMTACYALDSGWQVAVMAPTEILAEQHLINFQKWFE 348 Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 I V + G R AL+ I Q I++GTHALF D++ + KL LVI+DEQHRF Sbjct: 349 PLGIGVGWLAGKQTAKERTAALDAIRKNQVQIVVGTHALFSDTVVFAKLGLVIIDEQHRF 408 Query: 407 GVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463 GV+QRL+LT K APH L MTATPIPRTL ++ GD+D+S I E P R PI TV I Sbjct: 409 GVEQRLRLTNKGVSGGAPHQLAMTATPIPRTLAMSMYGDMDVSIIDELPPKRTPITTVTI 468 Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523 +R DEVIER++ GK+AYW+CP +EE + +S + L + +IHG Sbjct: 469 NRDRRDEVIERIQNNCQAGKQAYWVCPLVEESSALDVQSAQLTYEDLSDRLDIRTGLIHG 528 Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583 +M DK++VM +FK G LLIATTVIEVG+DV +AS+++IENAE GL+QLHQLRGRV Sbjct: 529 KMKAADKQAVMQAFKAGDIDLLIATTVIEVGVDVPNASLMVIENAERLGLSQLHQLRGRV 588 Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643 GRG S C+LLY PLS RL+VLK++ DGF+IA++DL+ R GE+LG +Q+G Sbjct: 589 GRGSAKSFCVLLYQLPLSPTGIERLNVLKDSTDGFVIAQKDLELRGAGELLGKRQTGDMG 648 Query: 644 FLIAQPELHDSLLEIA 659 + +A ++LLE A Sbjct: 649 YYLADIVRDEALLEAA 664 >gi|318603764|emb|CBY25262.1| ATP-dependent DNA helicase RecG [Yersinia enterocolitica subsp. palearctica Y11] Length = 693 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 258/676 (38%), Positives = 390/676 (57%), Gaps = 26/676 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS GVG + L+K+ ET DLL + P + DR +I ++ VT Sbjct: 10 PLSKLSGVGASQAGKLAKM-----GLET-IQDLLLHLPLRYEDRTRLYRIGDLLPGLSVT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + S +RR ++DG+G +TL FF M KN G+ + G+ K+ Sbjct: 64 VEGEVLR-SDISFGRRRMMTCQISDGSGVLTLRFFNFNAAM-KNSLSPGKHVIAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRL--PVLP 186 ++HP Y H +++ L E+ VY G+ + +K+I +AL+ L V+ Sbjct: 122 GNTGPEIIHPEYRVHG-ENIGVELQESLTPVYPTTEGIRQAILRKLIDQALAMLDSSVIT 180 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALLL 242 E + +L +S S+ EA + +H P + D E PA+ RL +ELLA +++L Sbjct: 181 ELLPIEL--SRSLISLPEAIHTLHRPPADIQLADLEQGKHPAQRRLIMEELLAHNLSMLA 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R + +P+ E ++ ++ L +PF+PT +Q+ + +I QDM+ M+R++QGDV Sbjct: 239 VRAGAQSYRALPLLPEEQLKRRFLAALPFTPTHAQQRVVAEIEQDMTHNFPMMRLIQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+ G Q +MAP +LA+QH +++ + V + G Sbjct: 299 GSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANTFRQWLGPLGLEVGWLAGKQKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R E +A GQ +++GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 359 ARLAQQEAVASGQVSMVVGTHAMFQEQVQFSGLALVIIDEQHRFGVHQRLALWEKGEEQG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R +VI+R+K Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDVIQRVKNA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L EG++AYW+C IEE + ++ L + ++HGRM +K++VM + Sbjct: 479 CLEEGRQAYWVCTLIEESELLEAQAAEVTCEELKIALPEIKVGLVHGRMKGPEKQAVMLA 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK G +LL+ATTVIEVG+DV +AS++II+N E GLAQLHQLRGRVGRG S C+LLY Sbjct: 539 FKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAVASHCVLLY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PLSK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G +F +A +++ Sbjct: 599 KTPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKVADLLRDQAMI 658 Query: 657 EIARKDAKHILTQDPD 672 ++ A+H+ Q P+ Sbjct: 659 PKVQRVARHLHQQYPE 674 >gi|261868130|ref|YP_003256052.1| ATP-dependent DNA helicase RecG [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413462|gb|ACX82833.1| ATP-dependent DNA helicase RecG [Aggregatibacter actinomycetemcomitans D11S-1] Length = 693 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 262/681 (38%), Positives = 387/681 (56%), Gaps = 38/681 (5%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+ GVG + L K+ G N DLLF+ P + DR I+++ E+ T Sbjct: 10 PLTAISGVGAAVAEKLGKL---GIFN---LQDLLFHLPLRYEDRTRITPIADLQAEQYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G + Q S Q +R + L+DGT ++ L FF M KN G ++ G++++ Sbjct: 64 IEGVV-QSSEVQFGRRPMLMVYLSDGTAKLALRFFNFNAGM-KNSLQPGARVKAFGEVRR 121 Query: 132 LKNRIIMVHPHY-IFHNSQDVNFPLIEA-----VYSLPTGLSVDLFKKIIVEALSRLPVL 185 + + HP Y I H+ N PL+ A +Y GL +K+I +AL L Sbjct: 122 GRFMAEIHHPEYQIIHD----NKPLVLAETLTPIYPATEGLKQTALRKLIAQALLVLDKT 177 Query: 186 PEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS------PARERLAYDELLAG 236 P +LL + P + A +HNP D T+ PA++RL ++ELLA Sbjct: 178 PI---AELLPAECNPHPFDLKFAIQFLHNP--PPDVSLTTLEEGRHPAQQRLIFEELLAY 232 Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 +A+ +R + P++ + + + L +PF PT +Q +DI +D++Q M+R Sbjct: 233 NLAMQKVRSGIQANFAEPLSYQSDLKARFLAQLPFQPTNAQLRVTEDIERDVAQPYPMMR 292 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 ++QGDVGSGKTLVA +A A++ G Q +MAP ILA+QH +++ + I V + Sbjct: 293 LVQGDVGSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHAVNFRRWFEPLGIQVGWLA 352 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G + R LE+I G +++GTHALFQ+ +++++L LVIVDEQHRFGV QRL L + Sbjct: 353 GKVKGKQRVAELEKIKSGAVQMVVGTHALFQEEVEFHRLSLVIVDEQHRFGVHQRLMLRE 412 Query: 417 KATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 K PH L+MTATPIPRTL +T D+D S I E P GR PI T+ I +R E+I Sbjct: 413 KGNQAGVYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTIAISEDRRAEII 472 Query: 473 ERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530 ER+ V + E ++AYW+C I+E + ++ L + I ++HGRM +K Sbjct: 473 ERVNVACTQEKRQAYWVCTLIDESEMLEAQAAEAVAEDLRKILPHLRIGLVHGRMKPNEK 532 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 ++VM FK LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S Sbjct: 533 QAVMAQFKLAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTAS 592 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 C+L+Y PPL K S RL V+++T+DGF+I+E+DL+ R GE+LG KQ+G+ +F +A Sbjct: 593 FCVLMYKPPLGKISQKRLQVMRDTQDGFVISEKDLEIRGPGEVLGTKQTGITEFKVANLM 652 Query: 651 LHDSLLEIARKDAKHILTQDP 671 +L + AK ++ + P Sbjct: 653 RDRKMLPTVQFYAKQLVQKYP 673 >gi|90412685|ref|ZP_01220686.1| putative ATP-dependent DNA helicase RecG [Photobacterium profundum 3TCK] gi|90326260|gb|EAS42679.1| putative ATP-dependent DNA helicase RecG [Photobacterium profundum 3TCK] Length = 697 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 253/678 (37%), Positives = 391/678 (57%), Gaps = 28/678 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L+ GVG K + L K+ T DLLF+ P + DR I++ + + + Sbjct: 11 LTELSGVGAKMAEKLEKV------GLTSVQDLLFHLPLRYEDRTRIWPIAQAMPGQHIAV 64 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G + +SS KRR + + D +G TL FF M +N EG+++ G+IK+ Sbjct: 65 QGEVL-NSSITFGKRRMLTVRIADNSGSATLRFFNFNAAM-QNNLAEGKQVKAFGEIKRG 122 Query: 133 KNRIIMVHPHY-IFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPEW 188 K + ++HP Y +F S + + VY GL + + +AL+ L + E Sbjct: 123 KFGLEIIHPDYSVFAESASLTGEENLTPVYPTTEGLRQLTLRNLTDQALNLLDKSAVTEL 182 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMR 244 + + L ++ ++ +A +++H P + PA+ RL +ELLA +++L +R Sbjct: 183 LPEGLYDRQM--TMTQALHVMHRPTPDVSLDQLEAGKHPAQHRLILEELLAQNLSMLAVR 240 Query: 245 KQFKKEIGIPI----NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 + ++ P+ N + +K+L ++PFSPT +Q+ + DI D+ + M+R++QG Sbjct: 241 SKSQQHSAWPLSACNNPADNLKEKLLASLPFSPTNAQQRVMADIEADLIKPLPMMRLVQG 300 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKTLVA +A A++ G Q +MAP +LA+QH + ++ I V + G + Sbjct: 301 DVGSGKTLVAALAALHAIQHGFQVALMAPTELLAEQHVQNFAQWFNPMDIQVGWMAGKLK 360 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 R L RI G+A +++GTHALFQD + + L LVI+DEQHRFGV QRL+L +K Sbjct: 361 GKARETELARIESGEAKMVVGTHALFQDHVTFKNLALVIIDEQHRFGVHQRLELREKGAN 420 Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PH L+MTATPIPRTL +T+ D++ S I E P GR PI+TV +P R ++ER++ Sbjct: 421 EGRYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVALPDTRRAAIVERIR 480 Query: 477 VVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 +EG++AYW+C I+E + ++ + + L ++ ++HGRM +K+ +M Sbjct: 481 SACQNEGRQAYWVCTLIDESEVLEAQAASDTADELTAQLPELNVGLVHGRMKAAEKQEIM 540 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 FK G +LL+ATTVIEVG+DV +AS+++IEN E GLAQLHQLRGRVGRG+ S C+L Sbjct: 541 RRFKAGELQLLVATTVIEVGVDVPNASLMVIENPERLGLAQLHQLRGRVGRGKVASHCVL 600 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 LYH PLSK + RL VL+++ DGF+IA+ DL+ R GE+LG KQ+G+ F IA Sbjct: 601 LYHAPLSKTAQKRLGVLRDSSDGFVIAQRDLEIRGPGELLGTKQTGIADFKIADLVRDQH 660 Query: 655 LLEIARKDAKHILTQDPD 672 L+ +K A++I Q P+ Sbjct: 661 LIPQVQKLARYIHEQYPN 678 >gi|36783701|emb|CAE12554.1| ATP-dependent DNA helicase [Photorhabdus luminescens subsp. laumondii TTO1] Length = 703 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 261/695 (37%), Positives = 398/695 (57%), Gaps = 44/695 (6%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MR L+ + PL++ RGVG + L+KI G N DLL + P + D+ Sbjct: 11 MRGPLLDAI--PLTSLRGVGANQAAKLAKI---GLVN---LQDLLLHFPLRYEDQTRLYT 62 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 I+++ T+TG I + + + +RR ++DGTG +TL FF M +N +G Sbjct: 63 INDLLPGISATVTGEILR-TDVTVSRRRTLICKISDGTGVLTLRFFNFSAAM-RNNLAKG 120 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVE 177 +++ V G+I++ ++HP Y N N L E +Y G+ + +I + Sbjct: 121 KQVVVYGEIRRGGQGAEIIHPEYKIQNHTG-NVQLQETLTPIYPTTEGVRQATLRNLIDQ 179 Query: 178 ALSRLP------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFE-WTSPARER 227 AL L +LPE + + ++ S+ +A + +H P D E PA R Sbjct: 180 ALKLLDTCTINELLPEELSRSII------SLPQALHTLHRPTPDIALVDLETGKHPAYRR 233 Query: 228 LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287 L +ELLA +++L +R ++ P+ E K+ + L +PFSPT +Q+ + +I QD Sbjct: 234 LVLEELLAHHLSMLAVRAGVQRYHAQPLPTEDKLKPQFLNRLPFSPTHAQQRVVSEIEQD 293 Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347 +++ M+R++QGDVGSGKTLVA +A A+ G Q +MAP +LA+QH +++ + Sbjct: 294 LAKDVPMMRLIQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANTFRRWLEP 353 Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407 I V + G R+K E IA+GQ +I+GTHA+FQ+ +++ L LVI+DEQHRFG Sbjct: 354 LGIQVGWLAGKQKGKARQKQQEAIANGQVAMIVGTHAMFQEQVKFSGLALVIIDEQHRFG 413 Query: 408 VQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463 V QRL L +K PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV I Sbjct: 414 VHQRLALWEKGREQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAI 473 Query: 464 PINRIDEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS----- 517 P R +E+I+R++ L E ++AYW+C IE+ ++ + E T + Sbjct: 474 PDTRREEIIKRIRNACLDENRQAYWVCTLIEDSDVLEAQAA----QATSEELTLALPELK 529 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 + ++HGRM +K+ VM++FK G +LL+ATTVIEVG+DV +AS++II+N E GLAQLH Sbjct: 530 VGLVHGRMKAAEKQQVMEAFKCGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLH 589 Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637 QLRGRVGRG S C+LLY PLS + RL VL+++ DGF+IA++DL+ R GE+LG + Sbjct: 590 QLRGRVGRGAIASHCVLLYKTPLSSTARIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTR 649 Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 Q+G +F +A +L ++ A+HI P+ Sbjct: 650 QTGNAEFKVADLLRDQGMLPEIQRIARHIHQHYPE 684 >gi|309797606|ref|ZP_07691994.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 145-7] gi|308118793|gb|EFO56055.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 145-7] Length = 693 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ +P++ + K+L +PF PT +Q + +I DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHALPLSANDALKNKLLAALPFKPTGAQARVVAEIEHDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|296133598|ref|YP_003640845.1| ATP-dependent DNA helicase RecG [Thermincola sp. JR] gi|296032176|gb|ADG82944.1| ATP-dependent DNA helicase RecG [Thermincola potens JR] Length = 808 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 251/666 (37%), Positives = 383/666 (57%), Gaps = 23/666 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL------LND 96 DL +Y P + DR ++ T +G I LQ+ +P + L L D Sbjct: 152 DLFYYIPRRYEDRSQLKPFYMLAHGETETASGII-----VGLQEIKPRRGLTITKAALRD 206 Query: 97 GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI-KKLKNRIIMVHPHYIFHNSQDVNFPL 155 TG ++F + +K G+++ V+GK+ KK I V + +S +V+ Sbjct: 207 ATGIGYAVWFNQP--YVKKQLIPGKELIVSGKVDKKFGQVQITVADFEVVDDSDNVHVGR 264 Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 I VYS+ GL +F+ I+ + L E + + ++ PSI EA IH P Sbjct: 265 IVPVYSVTEGLPQRVFRTIMKNLIDSFGDRLAEPLPDSIRRRYDLPSINEALRNIHFP-- 322 Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSP 273 +D+ AR RLA+DELL Q+ L M+ Q +K GI G + ++ + N+PF Sbjct: 323 -EDWNCIEEARRRLAFDELLVLQLGLASMKISQLRKVRGIAHKKHGPLMKRFMDNLPFPL 381 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 TK+Q+ ++ I +DM M R+LQGDVGSGKT+V+ A+ VE+G Q V+MAP IL Sbjct: 382 TKAQQRVLESIYRDMESPKPMNRLLQGDVGSGKTIVSAAALIKTVESGYQGVLMAPTEIL 441 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QHY +++ + V ++TG++ + L+ I+ G+ I+IGTHA+ QD + + Sbjct: 442 AEQHYLGLRELFAPLGVKVSLLTGSISNKEKEAVLQDISQGRTDIVIGTHAVIQDEVVFQ 501 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 KL L I DEQHRFGV+QR +L QK P VL+MTATPIPRTL +T GD+D+S I E P Sbjct: 502 KLGLAITDEQHRFGVKQRARLQQKGHYPDVLVMTATPIPRTLAMTVYGDLDVSVIDELPP 561 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 GR+P+KT + N+ + E ++ + EG++AY++CP +EE + + + VE + L + Sbjct: 562 GRQPVKTFWVTENKRQRMYEFIRQQVKEGRQAYFVCPLVEESDKLDVEAAVETADRLAQV 621 Query: 514 FTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 I ++HGRM +KE VM +F++G +L+ATTVIEVG++V +A++++IE+AE F Sbjct: 622 VFPDLRIGLLHGRMKADEKEQVMKAFRDGKIDILVATTVIEVGVNVPNATVMVIEDAERF 681 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631 GLAQLHQLRGRVGRG S CILL P + R+ +++ + DGF IAEEDLK R G Sbjct: 682 GLAQLHQLRGRVGRGSHQSYCILLADPKTDEGK-ARMQIMQASTDGFKIAEEDLKLRGPG 740 Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691 + G +QSG+P IA +LE+AR + I+ +DP L+ + ++ L+ + ++ Sbjct: 741 DFFGTRQSGLPDLKIADIVRDVKILEMARVTSFEIIEKDPALSLPEHRELKKLM-VEKFK 799 Query: 692 EAFQFI 697 + FI Sbjct: 800 NKYHFI 805 >gi|320157694|ref|YP_004190073.1| ATP-dependent DNA helicase RecG [Vibrio vulnificus MO6-24/O] gi|319933006|gb|ADV87870.1| ATP-dependent DNA helicase RecG [Vibrio vulnificus MO6-24/O] Length = 673 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 256/639 (40%), Positives = 381/639 (59%), Gaps = 20/639 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLLF+ P + DR I+++ + G + Q + KR+ + L+DG G IT Sbjct: 15 DLLFHLPLRYEDRTRIYPIAKLHAGLWAAVQGNVMQVDTL-FGKRKMLTVKLSDGNGTIT 73 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFH---NSQDVNFPLIEAV 159 L FF T +KN F EG+ + G+IK+ + +VHP Y F DV L V Sbjct: 74 LRFF-NFTAAMKNNFAEGKLVHAYGEIKRGNMGLEIVHPDYKFFAPTQKPDVEQSLT-PV 131 Query: 160 YSLPTGLSVDLFKKIIVEALSRL--PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 Y GL + + +AL+ L + E + L ++ ++ +A +IIH P + Sbjct: 132 YPTTDGLRQITLRNLTDQALALLDKAAVQELLPAGLYDQQL--TMGQALHIIHRPSPEIN 189 Query: 218 FEW----TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 E PA+ RL +ELLA +++L +R + ++++ +P+ ++ Q++L +PFSP Sbjct: 190 LELFDEGKHPAQVRLIMEELLAQNLSMLAVRSKGQQDVALPLPPVHQLKQQLLAQLPFSP 249 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T +Q +++I +DM + + M+R++QGDVGSGKTLVA +A A+E G Q +MAP +L Sbjct: 250 TNAQARVVQEIEEDMQKAHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQVALMAPTELL 309 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QH + + I V + G + + L RIA G+A +++GTHALFQ+ + + Sbjct: 310 AEQHAINFANWFEKMGIPVGWLAGKLKGKAKEAELARIASGEAKMVVGTHALFQEHVVFD 369 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKIT 449 L LVI+DEQHRFGV QRL+L +K PH L+MTATPIPRTL +T+ D++ S I Sbjct: 370 HLALVIIDEQHRFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVID 429 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 E P GR PI+TV IP + ++++ER++ L+EGK+AYW+C I+E + ++ E Sbjct: 430 ELPPGRTPIQTVAIPDTKREDIVERIRHACLNEGKQAYWVCTLIDESEVLEAQAAAETAE 489 Query: 509 SLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 L I ++HGRM +K++VM +FKN LL+ATTVIEVG+DV +AS++IIEN Sbjct: 490 ELQRKLPDVRIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVPNASLMIIEN 549 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627 E GLAQLHQLRGRVGRG S C+LLYH PLSK + RLSVL+ + DGF+IA+ DL+ Sbjct: 550 PERLGLAQLHQLRGRVGRGSVASHCVLLYHAPLSKTAQKRLSVLRESNDGFVIAQRDLEI 609 Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666 R GE+LG KQ+G+ F IA L+ ++ A++I Sbjct: 610 RGPGELLGTKQTGLADFKIADLVRDQRLIPEVQRAARYI 648 >gi|212633208|ref|YP_002309733.1| ATP-dependent DNA helicase RecG [Shewanella piezotolerans WP3] gi|212554692|gb|ACJ27146.1| ATP-dependent DNA helicase RecG [Shewanella piezotolerans WP3] Length = 696 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 256/678 (37%), Positives = 386/678 (56%), Gaps = 26/678 (3%) Query: 10 FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69 P++ +GV KK + L+K+ T DLLF+ P + DR I+ + Sbjct: 11 LVPITELKGVAKKMAERLAKL------GITTVQDLLFHLPLRYEDRTQIYPIASLYPGSY 64 Query: 70 VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 T+ I Q +KR + D TG +TL FF +N G I G+I Sbjct: 65 GTVEAVIQSSQVLQGRKRM-LTCTVRDDTGSLTLRFFNFSVAQ-RNGLQTGSVIRAYGEI 122 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLP--V 184 ++ K+ ++HP Y S D PL + VY GL + K+ +AL L Sbjct: 123 RRGKHFNEIIHPEYKL-VSIDDPAPLSDTLTPVYPTTEGLKQASWIKLTEQALMMLANGG 181 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK---DFE-WTSPARERLAYDELLAGQIAL 240 LPE + +L + + + +A ++H P D E T PA++RL +ELLA +++ Sbjct: 182 LPELLPSNL--QPNHMELKQALQLLHRPNNQVSLFDLENGTHPAQQRLIQEELLAHNLSM 239 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L +R++ +++ + ++ G++ L ++PF PT +Q+ + DI +D+ + M+R++QG Sbjct: 240 LRLRQRTRRDAAVSMSATGQLLNPFLASLPFKPTGAQQRVVSDITRDLEKAEPMMRLVQG 299 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKTLVA +A A+E+G Q +MAP +LA+QH + + + I V + G + Sbjct: 300 DVGSGKTLVAALAALQAIESGYQVAMMAPTELLAEQHAINFRSWFEPLGIKVGWLAGKLK 359 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 R ++L I G A+I+IGTHA+FQ + + KL L+I+DEQHRFGV QRL L +K + Sbjct: 360 GKARTQSLADIESGDANIVIGTHAIFQQQVVFNKLALIIIDEQHRFGVHQRLGLREKGVS 419 Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV + R +EVI+R++ Sbjct: 420 QGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAVSDQRREEVIDRVR 479 Query: 477 -VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 +++ ++AYW+C IEE + ++ + L + ++HGRM +K+ +M Sbjct: 480 QAAVNDNRQAYWVCTLIEESEALECQAAEDTAEELKLALPELKVGLVHGRMKPAEKQQIM 539 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+L Sbjct: 540 ASFKAGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAIASHCVL 599 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 +Y PPLS + RL VL+ + DGF+IA+ DL+ R GE+LG KQ+G+ IA + Sbjct: 600 MYKPPLSATATKRLGVLRQSNDGFIIAQRDLEIRGPGEVLGTKQTGVADMKIADLMRDQA 659 Query: 655 LLEIARKDAKHILTQDPD 672 L+ +K A H++ Q PD Sbjct: 660 LIPHVQKLAPHVMQQAPD 677 >gi|82779143|ref|YP_405492.1| ATP-dependent DNA helicase RecG [Shigella dysenteriae Sd197] gi|81243291|gb|ABB64001.1| DNA helicase [Shigella dysenteriae Sd197] Length = 693 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 258/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H PR + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPRPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIECDMALNVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|319424728|gb|ADV52802.1| ATP-dependent DNA helicase RecG [Shewanella putrefaciens 200] Length = 691 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 254/680 (37%), Positives = 389/680 (57%), Gaps = 30/680 (4%) Query: 10 FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69 P++ +GV KK + L+K+ T DLLF+ P + DR I+ +S Sbjct: 6 LVPITDLKGVAKKVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALSPGSY 59 Query: 70 VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 TI I S Q+ + R ++ N D TG ++L FF +N G I G Sbjct: 60 GTIEAEIQ---STQIIQGRKRMLVCNVRDDTGSLSLRFFNFSVAQ-RNAMQNGLMIRAYG 115 Query: 128 KIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 ++++ ++ +VHP Y + + +DV+ + +Y GL + K+ +AL +L Sbjct: 116 EVRRGSHQAEIVHPEYKVVYPGEDVHLSDTLTPIYPTTEGLKQASWLKLTEQALV---LL 172 Query: 186 PEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAK---DFEWTS-PARERLAYDELLAGQI 238 E +LL + P S+ +A +H P D E PA++RL +ELLA + Sbjct: 173 KEGGLTELLPPQLQPNNISLKQALQTLHRPPAGISQFDLELGQHPAQQRLVQEELLAHNL 232 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 ++L +R++ + + + G++ L +PF PT +Q+ + DI +D+ + + M+R++ Sbjct: 233 SMLRLRQRSNLDAAVTMQATGQLLNPFLAALPFKPTGAQQRVVADIGKDLEKPHPMMRLV 292 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKTLVA +A A+E G Q +MAP +LA+QH + + + V + G Sbjct: 293 QGDVGSGKTLVAAMAALQAIENGYQVAMMAPTELLAEQHATNFAAWFEPLGLKVGWLAGK 352 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + R ++L I G A ++IGTHA+FQ + + KL L+I+DEQHRFGV QRL L +K Sbjct: 353 LKGKARTQSLADIESGAAQMVIGTHAIFQQHVVFNKLALIIIDEQHRFGVHQRLGLREKG 412 Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 + PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV I +R +EV+ER Sbjct: 413 MSQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIADSRRNEVLER 472 Query: 475 LK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532 ++ V+++ ++AYW+C IEE + ++ + L +I ++HGR+ +K+ Sbjct: 473 VRNAVITDQRQAYWVCTLIEESEVLECQAAEDTAEELRLALPDLNIGLVHGRLKSAEKQQ 532 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +M FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C Sbjct: 533 IMADFKAGMIHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAIASHC 592 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +LLY PLS + RLSVL+ + DGF+IA++DL+ R GE+LG KQ+G+ + IA Sbjct: 593 VLLYKAPLSHTATQRLSVLRQSNDGFIIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRD 652 Query: 653 DSLLEIARKDAKHILTQDPD 672 +L+ +K A H++TQ P+ Sbjct: 653 QALIPHIQKLANHVMTQAPE 672 >gi|260913046|ref|ZP_05919528.1| DNA helicase RecG [Pasteurella dagmatis ATCC 43325] gi|260632633|gb|EEX50802.1| DNA helicase RecG [Pasteurella dagmatis ATCC 43325] Length = 693 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 262/681 (38%), Positives = 388/681 (56%), Gaps = 30/681 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++T GVG S LS+I G N DLLF+ P + DR I ++ E T Sbjct: 10 PITTLSGVGPAVSEKLSRI---GIHN---LQDLLFHLPIRYEDRTRITPIKDLRPESYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G I Q Q KR + L+DGT +I+L FF M K+ G ++ G+IK+ Sbjct: 64 IEG-IVQTCEVQFGKRPILSVSLSDGTSKISLRFFNFNAGM-KSSLQPGARVKAFGEIKR 121 Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + + HP Y + N V + +YS GL + +K+ +AL+ VL + Sbjct: 122 GRFMAEIHHPDYQILRDNVPSVLEETLTPIYSTTEGLKQNSLRKLTDQALA---VLDKIQ 178 Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242 ++L + P S+ EA +H P E PA++RL ++ELLA +A+ Sbjct: 179 IAEILPNEFNPHPFSLKEAIRFLHRPPPDTSLEALENGKHPAQQRLIFEELLAHNLAMQK 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R ++ P++ + Q+ L +PF PT +Q +DI +D++ M+R++QGDV Sbjct: 239 VRLGTQQFSAYPLHYRSDLKQRFLAQLPFKPTNAQARVTQDIERDLANPFPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A++ G Q +MAP ILA+QH +++ + I V + G + Sbjct: 299 GSGKTLVAALAAILAIDNGKQVALMAPTEILAEQHTASFRRWLEPLGIEVGWLAGKVKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R+ LE I G+ +++GTHALFQ+++++ L LVIVDEQHRFGV QRL L +K Sbjct: 359 ARQTELEDIRTGKVQMVVGTHALFQENVEFSDLALVIVDEQHRFGVHQRLMLREKGKKAD 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T D+D S I E P GR PI TV I +R EVI R+ Sbjct: 419 MYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRAEVIARVNNA 478 Query: 478 VLSEGKKAYWICPQIEEKK---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534 ++E ++AYW+C I+E + ++ E + H I ++HGRM +K+ +M Sbjct: 479 CVNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLRKILPHL--RIGLVHGRMKPAEKQEIM 536 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 +FK+ LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S C+L Sbjct: 537 TAFKSAEIDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGTTASFCVL 596 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 +Y PPL K S RL VL+ T+DGF+I+E+DL+ R GE+LG KQ+G+ +F +A Sbjct: 597 MYKPPLGKISQKRLQVLRETQDGFVISEKDLEIRGPGEVLGTKQTGIAEFKVANLLRDRK 656 Query: 655 LLEIARKDAKHILTQDPDLTS 675 ++ + A+ ++ + PD+ + Sbjct: 657 MIPTVQYYARRLIVEQPDIAA 677 >gi|161579578|ref|NP_927622.2| ATP-dependent DNA helicase RecG [Photorhabdus luminescens subsp. laumondii TTO1] Length = 693 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 261/695 (37%), Positives = 398/695 (57%), Gaps = 44/695 (6%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MR L+ + PL++ RGVG + L+KI G N DLL + P + D+ Sbjct: 1 MRGPLLDAI--PLTSLRGVGANQAAKLAKI---GLVN---LQDLLLHFPLRYEDQTRLYT 52 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 I+++ T+TG I + + + +RR ++DGTG +TL FF M +N +G Sbjct: 53 INDLLPGISATVTGEILR-TDVTVSRRRTLICKISDGTGVLTLRFFNFSAAM-RNNLAKG 110 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVE 177 +++ V G+I++ ++HP Y N N L E +Y G+ + +I + Sbjct: 111 KQVVVYGEIRRGGQGAEIIHPEYKIQNHTG-NVQLQETLTPIYPTTEGVRQATLRNLIDQ 169 Query: 178 ALSRL------PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARER 227 AL L +LPE + + ++ S+ +A + +H P D E PA R Sbjct: 170 ALKLLDTCTINELLPEELSRSII------SLPQALHTLHRPTPDIALVDLETGKHPAYRR 223 Query: 228 LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287 L +ELLA +++L +R ++ P+ E K+ + L +PFSPT +Q+ + +I QD Sbjct: 224 LVLEELLAHHLSMLAVRAGVQRYHAQPLPTEDKLKPQFLNRLPFSPTHAQQRVVSEIEQD 283 Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347 +++ M+R++QGDVGSGKTLVA +A A+ G Q +MAP +LA+QH +++ + Sbjct: 284 LAKDVPMMRLIQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANTFRRWLEP 343 Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407 I V + G R+K E IA+GQ +I+GTHA+FQ+ +++ L LVI+DEQHRFG Sbjct: 344 LGIQVGWLAGKQKGKARQKQQEAIANGQVAMIVGTHAMFQEQVKFSGLALVIIDEQHRFG 403 Query: 408 VQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463 V QRL L +K PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV I Sbjct: 404 VHQRLALWEKGREQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAI 463 Query: 464 PINRIDEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS----- 517 P R +E+I+R++ L E ++AYW+C IE+ ++ + E T + Sbjct: 464 PDTRREEIIKRIRNACLDENRQAYWVCTLIEDSDVLEAQAA----QATSEELTLALPELK 519 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 + ++HGRM +K+ VM++FK G +LL+ATTVIEVG+DV +AS++II+N E GLAQLH Sbjct: 520 VGLVHGRMKAAEKQQVMEAFKCGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLH 579 Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637 QLRGRVGRG S C+LLY PLS + RL VL+++ DGF+IA++DL+ R GE+LG + Sbjct: 580 QLRGRVGRGAIASHCVLLYKTPLSSTARIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTR 639 Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 Q+G +F +A +L ++ A+HI P+ Sbjct: 640 QTGNAEFKVADLLRDQGMLPEIQRIARHIHQHYPE 674 >gi|301018981|ref|ZP_07183204.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 69-1] gi|300399475|gb|EFJ83013.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 69-1] Length = 693 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDAPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R +++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRNDIIDRMRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|24375845|ref|NP_719888.1| ATP-dependent DNA helicase RecG [Shewanella oneidensis MR-1] gi|24350804|gb|AAN57332.1|AE015869_8 ATP-dependent DNA helicase RecG [Shewanella oneidensis MR-1] Length = 688 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 254/679 (37%), Positives = 395/679 (58%), Gaps = 28/679 (4%) Query: 10 FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69 P++ +GV K+ + L+K+ T DLLF+ P + DR I+ + Sbjct: 3 LVPITELKGVAKRVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALMPGNY 56 Query: 70 VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 TI I S Q+ + R ++ N D TG ++L FF +N G I G Sbjct: 57 GTIEAEIQ---STQILQGRKRMLVCNVRDNTGSMSLRFFNFSMAQ-RNAMQNGLMIRAYG 112 Query: 128 KIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLP-- 183 +I++ ++ +VHP Y I + +D++ + +Y GL + K+ +AL L Sbjct: 113 EIRRGNHQAEIVHPEYKIVYPGEDIHLSDTLTPIYPTTEGLKQASWIKLTEQALELLEDG 172 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK---DFEWTS-PARERLAYDELLAGQIA 239 L E + DL + + S+ +A +H P D E PA++RL +ELLA ++ Sbjct: 173 GLTELLPADL--QPNNMSLKQALQTLHRPHAGISQFDLELGQHPAQQRLVQEELLAHNLS 230 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 +L +R++ + + ++ G++ L ++PF PT +Q+ + +I +D++Q + M+R++Q Sbjct: 231 MLRLRQRSNLDAAVTMHATGQLLNPFLTSLPFKPTGAQQRVVAEIGKDLAQPHPMMRLVQ 290 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKTLVA +A A+E G Q +MAP +LA+QH + + + V + G + Sbjct: 291 GDVGSGKTLVAALAALQAIENGYQVAMMAPTELLAEQHAANFAAWFEPLGLKVGWLAGKL 350 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R ++L I G A I+IGTHA+FQ + ++KL L+I+DEQHRFGV QR+ L +K Sbjct: 351 KGKARAQSLADIESGAAQIVIGTHAIFQQQVIFHKLALIIIDEQHRFGVHQRMGLREKGI 410 Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP +R +EV+ER+ Sbjct: 411 NQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDSRRNEVLERV 470 Query: 476 K-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533 + V+++ ++AYW+C IEE + ++ + L + +I ++HGRM +K+ + Sbjct: 471 RNSVITDKRQAYWVCTLIEESEVLECQAAEDTAEELRQALPELTIGLVHGRMKSAEKQKI 530 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M FK GT LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C+ Sbjct: 531 MADFKAGTINLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVASHCV 590 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 LLY PLS+ + RL+VL+ + DGF+IA++DL+ R GE+LG KQ+G+ + IA Sbjct: 591 LLYKAPLSQTASQRLNVLRQSNDGFVIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRDQ 650 Query: 654 SLLEIARKDAKHILTQDPD 672 +L+ +K A H+++Q PD Sbjct: 651 ALIPHIQKLANHVMSQAPD 669 >gi|71278605|ref|YP_271615.1| ATP-dependent DNA helicase RecG [Colwellia psychrerythraea 34H] gi|71144345|gb|AAZ24818.1| ATP-dependent DNA helicase RecG [Colwellia psychrerythraea 34H] Length = 697 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 263/654 (40%), Positives = 378/654 (57%), Gaps = 31/654 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLST +GVG + L KI D+LF+ P + D+ +I+ + + + T Sbjct: 13 PLSTLKGVGPSLAEKLEKI------GLLSVQDMLFHLPLRYEDK---TRITTVRDLLVGT 63 Query: 72 ITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 T I + + Q+ KRR + L+DGTG I L FF KN G+ I G++ Sbjct: 64 STNIIGEITDSQITHGKRRMLVVTLHDGTGSIQLCFFSFSASQ-KNSLAIGKTIRCYGEV 122 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP-- 183 K+ +VHP Y + D+ +E VY GL + + +AL RL Sbjct: 123 KRGPRGYQIVHPEYKSLDD-DIELTPVEETLTPVYPSTDGLRQISLRSLTEQALIRLQRG 181 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIA 239 + E + +L ++ S++EA IIH P E PA++RL +ELLA ++ Sbjct: 182 QVEELLPANLFNEQY--SLSEALTIIHRPPPEVSVEQLEQGRHPAQQRLIKEELLAHNLS 239 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 +L +R+ + + + KI+QK L +PFSPT +Q +++I D+++ M+R++Q Sbjct: 240 MLKLRQNSDIHDAVSLLGDEKISQKFLNALPFSPTNAQARVVEEIKTDLAKTQPMMRLVQ 299 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKTLVA +A A+ G Q +MAP ILA+QH + I V + G Sbjct: 300 GDVGSGKTLVAALAALTAISEGYQVALMAPTEILAEQHAINFANWFTPLDISVGWLAGKT 359 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +R ALE IA G+ ++IGTHALFQ + + L+LVI+DEQH+FGV QRL L +K Sbjct: 360 KAKAKRLALEHIASGEMQMVIGTHALFQADVVFKNLVLVIIDEQHKFGVHQRLTLREKGV 419 Query: 420 ----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 PH L+MTATPIPRTL +T+ D+D S I E P GR PI TV +P R +VIER+ Sbjct: 420 FDDKYPHQLIMTATPIPRTLSMTAYADLDTSIIDELPPGRTPINTVALPDLRRGDVIERI 479 Query: 476 KV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533 + +++G++AYW+C IEE + ++ + L E I ++HGRM I+K+ V Sbjct: 480 RQGCVNDGRQAYWVCTLIEESEVLQCQAAEDTAILLQEQLPELKIGLVHGRMKAIEKQEV 539 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 MD+FK+G LLIATTVIEVG+DV ++S+++IEN E GLAQLHQLRGRVGRG S C+ Sbjct: 540 MDAFKSGDLHLLIATTVIEVGVDVPNSSLMVIENPERLGLAQLHQLRGRVGRGSVASFCV 599 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 LLY PLSK + RL+VL+ + DGF+IAE+DL+ R GE+LG +Q+G+ IA Sbjct: 600 LLYKAPLSKTATKRLAVLRESNDGFVIAEKDLEIRGPGELLGTRQTGLADLKIA 653 >gi|197118286|ref|YP_002138713.1| ATP-dependent DNA helicase RecG [Geobacter bemidjiensis Bem] gi|197087646|gb|ACH38917.1| ATP-dependent DNA helicase RecG [Geobacter bemidjiensis Bem] Length = 772 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 259/703 (36%), Positives = 396/703 (56%), Gaps = 48/703 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI---- 64 L P+ + +GVG K + LSK D L+ P+ + DR KI+++ Sbjct: 72 LKTPMQSIKGVGPKLAATLSK------KGLDTVEDALYLLPNRYEDRRELKKIAQLRPGN 125 Query: 65 SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124 SE T+ +Q + RR ++ ++ D TG + L +F+ LK GR+ Sbjct: 126 SEAFFATVVSAAAQTTK---GGRRYFEAIVKDETGSLPLKWFHFHPNFLKKQLVPGRQGI 182 Query: 125 VTGKIKKLKNRIIMVHPHYIFH-NSQDV---------NFPLIEAVYSLPTGLSVDLFKKI 174 G + + + M HP + +D+ NF I VY L G+S + ++I Sbjct: 183 FIGDVAQFGFQREMHHPEVEWAAEGEDLSQVMARDPDNFGSILPVYPLTEGVSQKVMRRI 242 Query: 175 IVEALSRLP-----VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPAR 225 + +A+ R LP+ +LLQ+ ++ A H P + D S A Sbjct: 243 MRDAVQRYSRYVKGALPD----ELLQRHKLLTLPVALREAHLPAQDSDLSALNSGRSSAH 298 Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285 LA+DEL Q+ L L R+ E GI V + +++L+ +PFS T +Q+ + +I Sbjct: 299 RSLAFDELFFLQLGLALKRRGIAVEDGISFKVTHRYTKELLKLLPFSLTAAQKRVLSEIK 358 Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345 +DM + M R++QGDVG GKTLVAL+A VE Q IMAP +LA+QHY I Y Sbjct: 359 EDMMSPHPMHRLVQGDVGCGKTLVALMAALVCVENDYQVAIMAPTELLAEQHYLNIHGYC 418 Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405 + I V ++T ++ + LE+IA G I++GTHA+ Q+ +++++L L I+DEQHR Sbjct: 419 EKLGIGVTLLTASV--KGKGDTLEKIASGATQIVVGTHAVIQEKVEFHRLGLGIIDEQHR 476 Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465 FGV QR +L +K P +L+MTATPIPRTL +T GD+ +S I E P GR PI+T ++ Sbjct: 477 FGVVQRAQLKKKGANPDILVMTATPIPRTLSMTVFGDLSLSVIDELPPGRTPIETRMVRE 536 Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI------A 519 +R EV ++ ++G++AY I P +EE ++S+ ++ V+ + EH + A Sbjct: 537 SRRKEVYALVREEAAKGRQAYVIYPLVEETEKSDLKAAVQ----MAEHLAQDVFPDLRVA 592 Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579 ++HGRM +KE+VM FK GT +L+ATTVIEVGIDV +A++++IE+AE FGL+QLHQL Sbjct: 593 VLHGRMPAAEKEAVMKEFKAGTTDILVATTVIEVGIDVPNATVMVIEHAERFGLSQLHQL 652 Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639 RGRVGRG E S CILL LS++ RL V+ + DGF+IAE DL+ R G+ LG +Q+ Sbjct: 653 RGRVGRGSERSRCILLAGDKLSEDGQKRLEVMVQSSDGFVIAEADLQIRGPGDFLGTRQA 712 Query: 640 GMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682 G+P+ +A +LE ARKDA ++ +DP+L++ + +R Sbjct: 713 GLPELRVADILRDGGVLEQARKDAFALVERDPELSAPGHERLR 755 >gi|197264277|ref|ZP_03164351.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197242532|gb|EDY25152.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 693 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI DLL + P + DR + I E+ T Sbjct: 10 PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L V+ Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCVI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q S+ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L ++PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + + V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R+ E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R E+I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +EG++AYW+C IEE ++ + L +I ++HGRM +K++VM Sbjct: 478 ACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRIARHIHERYP 673 >gi|322612910|gb|EFY09862.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618975|gb|EFY15862.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625248|gb|EFY22075.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630084|gb|EFY26857.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634276|gb|EFY31011.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635823|gb|EFY32532.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642974|gb|EFY39552.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645033|gb|EFY41564.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649867|gb|EFY46290.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653074|gb|EFY49409.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661107|gb|EFY57335.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662404|gb|EFY58617.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667282|gb|EFY63448.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674341|gb|EFY70434.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678451|gb|EFY74512.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680957|gb|EFY76991.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687107|gb|EFY83080.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193171|gb|EFZ78389.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198252|gb|EFZ83358.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323200870|gb|EFZ85940.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206624|gb|EFZ91582.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210463|gb|EFZ95349.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216248|gb|EGA00976.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220471|gb|EGA04925.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225335|gb|EGA09569.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228449|gb|EGA12580.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234270|gb|EGA18358.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237255|gb|EGA21322.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244774|gb|EGA28778.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245851|gb|EGA29841.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250966|gb|EGA34842.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257286|gb|EGA40985.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262210|gb|EGA45771.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264579|gb|EGA48083.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268868|gb|EGA52326.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 693 Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust. Identities = 256/676 (37%), Positives = 382/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI DLL + P + DR + I E+ T Sbjct: 10 PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q S+ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + Q++L ++PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRYHAQPLSTNDTLKQQLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + + V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R+ E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R E+I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +EG++AYW+C IEE ++ + L +I ++HGRM +K++VM Sbjct: 478 ACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRIARHIHERYP 673 >gi|218551179|ref|YP_002384970.1| ATP-dependent DNA helicase RecG [Escherichia fergusonii ATCC 35469] gi|218358720|emb|CAQ91378.1| ATP-dependent DNA helicase [Escherichia fergusonii ATCC 35469] Length = 693 Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust. Identities = 258/676 (38%), Positives = 383/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAAQSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R +++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDTRRNDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L +I ++HGRM +K++VM Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|323975129|gb|EGB70234.1| ATP-dependent DNA helicase RecG [Escherichia coli TW10509] Length = 693 Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSMPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R +++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRNDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|229845419|ref|ZP_04465549.1| ATP-dependent DNA helicase [Haemophilus influenzae 6P18H1] gi|229811615|gb|EEP47314.1| ATP-dependent DNA helicase [Haemophilus influenzae 6P18H1] Length = 693 Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust. Identities = 259/678 (38%), Positives = 394/678 (58%), Gaps = 26/678 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI G N DLLF+ P + DR I+ + E+ VT Sbjct: 10 PLTSLSGVGAAISNKLAKI---GIHN---LQDLLFHLPIRYEDRTRITPIANLRPEQYVT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G I Q +R + L+DGT +I L FF M +N F G ++ G++K+ Sbjct: 64 IEG-IVQTCEIAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVGVRVKAFGEVKR 121 Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 ++ + HP Y + N+ V + +YS GL + +K+ +AL+ +L + Sbjct: 122 GRHMPEIHHPEYQIVLDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQALA---LLDKVQ 178 Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242 ++L + P S+ EA ++H P E PA++RL ++ELLA +A+ Sbjct: 179 IAEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQK 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R ++ +P++ + + Q+ L +PF PT +Q+ + DI QD+ + M+R++QGDV Sbjct: 239 VRLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVLDIEQDLIKDYPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A++ G Q +MAP ILA+QH +++ + I V + G + Sbjct: 299 GSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R+ LE+I G +++GTHALFQ+ +++ L LVI+DEQHRFGV QRL L +K Sbjct: 359 SRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVNQRLMLREKGEKAG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T D+D S I E P GR PI TV++ R E++ R+K Sbjct: 419 FYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRTEIVMRVKNA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 ++E ++AYW+C I+E + ++ + L + +I ++HGRM +K+ VM Sbjct: 479 CVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMR 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FKN LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S C+L+Y Sbjct: 539 FKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PPL K S RL VL++++DGF+I+E+DL+ R GE+LG KQ+G+ + +A ++ Sbjct: 599 KPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRVANLMRDRKMI 658 Query: 657 EIARKDAKHILTQDPDLT 674 + AK ++ + PDL Sbjct: 659 PTVQFYAKSLIQKYPDLA 676 >gi|293391661|ref|ZP_06635995.1| ATP-dependent DNA helicase RecG [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952195|gb|EFE02314.1| ATP-dependent DNA helicase RecG [Aggregatibacter actinomycetemcomitans D7S-1] Length = 693 Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust. Identities = 262/681 (38%), Positives = 387/681 (56%), Gaps = 38/681 (5%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+ GVG + + K+ G N DLLF+ P + DR I+++ E+ T Sbjct: 10 PLTVISGVG---AAVVEKLGKLGIFN---LQDLLFHLPLRYEDRTRITPIADLQAEQYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G + Q S Q +R + L+DGT ++ L FF M KN G ++ G++++ Sbjct: 64 IEGVV-QSSEVQFGRRPMLMVYLSDGTAKLALRFFNFNAGM-KNSLQPGARVKAFGEVRR 121 Query: 132 LKNRIIMVHPHY-IFHNSQDVNFPLIEA-----VYSLPTGLSVDLFKKIIVEALSRLPVL 185 + + HP Y I H+ N PL+ A +Y GL +K+I +AL L Sbjct: 122 GRFMAEIHHPEYQIIHD----NKPLVLAETLTPIYPSTEGLKQTTLRKLIGQALLVLDKT 177 Query: 186 PEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS------PARERLAYDELLAG 236 P +LL + P + A +HNP D T+ PA++RL ++ELLA Sbjct: 178 PI---AELLPAECNPHPFDLKSAIQFLHNP--PPDVSLTTLEEGKHPAQQRLIFEELLAY 232 Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 +A+ +R + P++ + + + L +PF PT +Q +DI +DM+Q M+R Sbjct: 233 NLAMQKVRSGIQANFAEPLSYQSDLKARFLAQLPFQPTNAQLRVTEDIERDMAQSYPMMR 292 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 ++QGDVGSGKTLVA +A A++ G Q +MAP ILA+QH +++ + I V + Sbjct: 293 LVQGDVGSGKTLVAALAALIAIDNGKQVALMAPTEILAEQHAVNFRRWFEPIGIQVGWLA 352 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G + R LE+I G +++GTHALFQ+ +++++L LVIVDEQHRFGV QRL L + Sbjct: 353 GKVKGKQRVAELEKIKSGAVQMVVGTHALFQEDVEFHRLSLVIVDEQHRFGVHQRLMLRE 412 Query: 417 KATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 K PH L+MTATPIPRTL +T D+D S I E P GR PI T+ I +R E+I Sbjct: 413 KGNQAGVYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTIAISEDRRAEII 472 Query: 473 ERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530 ER+ V + E ++AYW+C I+E + ++ L + I ++HGRM +K Sbjct: 473 ERVNVACTQEKRQAYWVCTLIDESEVLEAQAAEAVAEDLRKILPHLRIGLVHGRMKPNEK 532 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 ++VM FK LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S Sbjct: 533 QAVMAQFKLVELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTAS 592 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 C+L+Y PPL K S RL V+++T+DGF+I+E+DL+ R GE+LG KQ+G+ +F +A Sbjct: 593 FCVLMYKPPLGKISQKRLQVMRDTQDGFVISEKDLEIRGPGEVLGTKQTGITEFKVANLM 652 Query: 651 LHDSLLEIARKDAKHILTQDP 671 +L + AK ++ + P Sbjct: 653 RDRKMLPTVQFYAKQLVQKYP 673 >gi|218707286|ref|YP_002414805.1| ATP-dependent DNA helicase RecG [Escherichia coli UMN026] gi|293407275|ref|ZP_06651199.1| ATP-dependent DNA helicase recG [Escherichia coli FVEC1412] gi|298383021|ref|ZP_06992616.1| ATP-dependent DNA helicase recG [Escherichia coli FVEC1302] gi|300898587|ref|ZP_07116917.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 198-1] gi|331665277|ref|ZP_08366178.1| ATP-dependent DNA helicase RecG [Escherichia coli TA143] gi|331685314|ref|ZP_08385900.1| ATP-dependent DNA helicase RecG [Escherichia coli H299] gi|218434383|emb|CAR15309.1| ATP-dependent DNA helicase [Escherichia coli UMN026] gi|284923714|emb|CBG36811.1| ATP-dependent DNA helicase [Escherichia coli 042] gi|291426086|gb|EFE99120.1| ATP-dependent DNA helicase recG [Escherichia coli FVEC1412] gi|298276857|gb|EFI18375.1| ATP-dependent DNA helicase recG [Escherichia coli FVEC1302] gi|300357750|gb|EFJ73620.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 198-1] gi|331057787|gb|EGI29773.1| ATP-dependent DNA helicase RecG [Escherichia coli TA143] gi|331077685|gb|EGI48897.1| ATP-dependent DNA helicase RecG [Escherichia coli H299] Length = 693 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDAPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R +++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRNDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|323965918|gb|EGB61366.1| ATP-dependent DNA helicase RecG [Escherichia coli M863] gi|327250780|gb|EGE62482.1| ATP-dependent DNA helicase RecG [Escherichia coli STEC_7v] Length = 693 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAAQSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSMPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R +++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRNDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|204928489|ref|ZP_03219688.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321922|gb|EDZ07120.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 693 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 256/676 (37%), Positives = 381/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI DLL + P + DR + I E+ T Sbjct: 10 PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q S+ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + Q++L ++PF PT +Q + +I DM+ M+R++QGD Sbjct: 238 ALRAGAQRYHAQPLSTNDTLKQQLLASLPFKPTSAQARVVAEIEHDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + + V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R+ E IA+GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARQAQQEAIANGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R E+I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +EG++AYW+C IEE ++ + L +I ++HGRM +K++VM Sbjct: 478 ACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A + Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQGM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRIARHIHERYP 673 >gi|319789141|ref|YP_004150774.1| ATP-dependent DNA helicase RecG [Thermovibrio ammonificans HB-1] gi|317113643|gb|ADU96133.1| ATP-dependent DNA helicase RecG [Thermovibrio ammonificans HB-1] Length = 817 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 249/714 (34%), Positives = 418/714 (58%), Gaps = 35/714 (4%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 + F P+ +G+ K ++++ G + ID ++Y P + DR K++++ Sbjct: 120 IEAFFQPVEKIKGITAKR---VNRLKKLGIES---VIDAIYYLPFRYEDRTTVTKMAQLK 173 Query: 66 EERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFE----- 119 +R + G ++ S + + + K+ L D TG ++L+F +K + FE Sbjct: 174 PDREQLVKGKVTAISQIKTKNGKELLKVTLYDKTGAVSLIFLNKKVFGYYKLLFEKAKKL 233 Query: 120 GRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKK---II 175 G+++ GK+K+ + + HP + + I +Y GL ++ + Sbjct: 234 GKEVLAYGKVKRSTSGFTIYHPEVEVLEPGRLEKLGRILPIYHCAEGLKQTTVRRDIHFV 293 Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE---WTSPARERLAYDE 232 VE + LP +PE++ + + +++ AEAF +H P K E + SP + R+ +DE Sbjct: 294 VEKV--LPFMPEYLPEKIRKRQKLLEAAEAFWRVHFPSDEKPEELQTFRSPPQRRVIFDE 351 Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292 L Q+AL L R++ K+E GI V ++ ++ + +PF T +QE +K+I++DM + Sbjct: 352 LFLFQLALALHRQKVKRERGIAFPVTEELIEEFKKALPFKLTGAQERVLKEIVEDMKKPE 411 Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352 M R++QGDVGSGKT+VA A A ++G Q +MAP ILA QHY+ K++ + I V Sbjct: 412 PMNRLVQGDVGSGKTVVAAAAAFFAAKSGYQTAVMAPTEILANQHYKKFKEFLKPYGITV 471 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 ++TG+M + + I G +++GTHAL Q+ +++ L LV++DEQHRFGV+QR+ Sbjct: 472 GLLTGSMTKREKETVYRAIKEGVIKVVVGTHALIQEGVEFKNLGLVVIDEQHRFGVKQRV 531 Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 +L +K P VL+MTATPIPRTL +T+ GD+D+S I E PAGRKP+KT I+ + + +++ Sbjct: 532 ELKKKGKMPDVLVMTATPIPRTLAMTAYGDLDVSVIDELPAGRKPVKTEILFSDELPKLV 591 Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS------IAIIHGRMS 526 +RLK L +G +AY + P +EE ++ ++ E +H HF S + ++HG+M Sbjct: 592 KRLKEELQKGNRAYIVYPLVEESEKLELKAATE----MH-HFWSEKLKPYRVGLLHGKMK 646 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 +K+ VM++FK G ++L++TTVIEVG+DV +A++++IE+AE FGLAQLHQLRGRVGRG Sbjct: 647 QEEKDKVMEAFKRGEFQVLVSTTVIEVGVDVPEATVMVIEHAERFGLAQLHQLRGRVGRG 706 Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646 + S C L+ + + + RL VL++T DGF IAE DL R GEI G +QSG+ F + Sbjct: 707 DRQSYCYLVTSREVGEEAIKRLKVLESTNDGFKIAEADLAFRGPGEIFGTRQSGLGDFKV 766 Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 A +L+ AR++A ++ ++P+L + + ++ L+ +++ E F + G Sbjct: 767 ADLRRDYDILKEARREAMELIKENPELNGL--EELKKLMK-FRFGEKFDLVEVG 817 >gi|161486064|ref|NP_756339.2| ATP-dependent DNA helicase RecG [Escherichia coli CFT073] gi|227883842|ref|ZP_04001647.1| ATP-dependent DNA helicase RecG [Escherichia coli 83972] gi|300984895|ref|ZP_07177183.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 45-1] gi|301047442|ref|ZP_07194521.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 185-1] gi|227839120|gb|EEJ49586.1| ATP-dependent DNA helicase RecG [Escherichia coli 83972] gi|300300650|gb|EFJ57035.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 185-1] gi|300408324|gb|EFJ91862.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 45-1] gi|307555770|gb|ADN48545.1| ATP-dependent DNA helicase RecG [Escherichia coli ABU 83972] gi|315292921|gb|EFU52273.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 153-1] Length = 693 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 258/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM DK++VM Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPADKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|26110729|gb|AAN82913.1|AE016769_28 ATP-dependent DNA helicase recG [Escherichia coli CFT073] Length = 704 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 258/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 21 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 74 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 75 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 132 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 133 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 190 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 191 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 248 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 249 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 308 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 309 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 368 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 369 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 428 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 429 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 488 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM DK++VM Sbjct: 489 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPADKQAVMA 548 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 549 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 608 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 609 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 668 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 669 IPEVQRLARHIHERYP 684 >gi|157373102|ref|YP_001481091.1| ATP-dependent DNA helicase RecG [Serratia proteamaculans 568] gi|157324866|gb|ABV43963.1| ATP-dependent DNA helicase RecG [Serratia proteamaculans 568] Length = 693 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/678 (37%), Positives = 388/678 (57%), Gaps = 32/678 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+T GVG + L+KI ET DLL + P + DR I+++ T Sbjct: 10 PLTTLSGVGASQAGKLAKI-----GLET-IQDLLLHLPLRYEDRTRLYPINDLQPGIFAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + +RR ++DGTG +T+ FF M KN GR++T G++K+ Sbjct: 64 VEGEVLR-TDISFGRRRMLTCQISDGTGLLTMRFFNFNAAM-KNSLATGRRVTAYGEVKR 121 Query: 132 LKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRL------P 183 + ++HP Y I S +V + VY G+ +K+ +AL L Sbjct: 122 GNHGAEIIHPEYRIQGESSEVELQESLTPVYPTTEGIRQATLRKLTDQALELLDTCAITE 181 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIA 239 +LP + L+ S+ +A + +H P + D E PA++RL +ELLA ++ Sbjct: 182 LLPSELSGGLM------SLPQALHTLHRPPPDIQLVDLEQGKHPAQKRLIMEELLAHNLS 235 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 +L +R + +P+ + ++ + L +PF+PT +Q+ + DI DM + M+R++Q Sbjct: 236 MLAVRAGAQSYQALPLMPDDRLKTQFLAQLPFTPTGAQDRVVADIEADMQKGFPMMRLVQ 295 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKTLVA +A A+ G Q +MAP +LA+QH +++ + + V + G Sbjct: 296 GDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRQWFEPLGLEVGWLAGKQ 355 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R E IA GQ +++GTHA+FQ+ +++ L LVI+DEQHRFGV QRL L +K Sbjct: 356 KGKARIAQQEAIASGQVSMVVGTHAIFQEQVKFSGLALVIIDEQHRFGVHQRLALWEKGE 415 Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 H L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R+ Sbjct: 416 EQGFHAHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRADIIQRV 475 Query: 476 K-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533 K L EG++AYW+C IEE + ++ + L +A+IHGRM +K++V Sbjct: 476 KSACLEEGRQAYWVCTLIEESELLEAQAAEATWEELKTALPELKVALIHGRMKAQEKQAV 535 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M +FK G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+ Sbjct: 536 MQAFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCV 595 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 LLY PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A Sbjct: 596 LLYKTPLSKTAQKRLQVLRDSNDGFVIAQQDLEIRGPGELLGTRQTGSAEFKVADLLRDQ 655 Query: 654 SLLEIARKDAKHILTQDP 671 +++ ++ A+HI Q P Sbjct: 656 AMIPEVQRVARHIHQQYP 673 >gi|187732822|ref|YP_001882365.1| ATP-dependent DNA helicase RecG [Shigella boydii CDC 3083-94] gi|187429814|gb|ACD09088.1| ATP-dependent DNA helicase RecG [Shigella boydii CDC 3083-94] Length = 693 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPV--L 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSMIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|332139566|ref|YP_004425304.1| ATP-dependent DNA helicase RecG [Alteromonas macleodii str. 'Deep ecotype'] gi|327549588|gb|AEA96306.1| ATP-dependent DNA helicase RecG [Alteromonas macleodii str. 'Deep ecotype'] Length = 690 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 254/651 (39%), Positives = 378/651 (58%), Gaps = 27/651 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +GVG K + L+KI D+LF+ P + DR ++E V+ Sbjct: 8 PITALKGVGAKVAEKLNKI------GLFTLQDILFHLPHRYEDRTRIYSVAECRPFTHVS 61 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + Q K+R + L+DGTG ITL FF+ + +++ G + G+++ Sbjct: 62 VQGEV-MGADIQYGKKRMLVVKLSDGTGTITLRFFHFGA-VQRSIMTPGNTVRCFGEVRT 119 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS--RLPVLPEWI 189 K I M+HP + D + P E + P + D K++ + L+ L +L + Sbjct: 120 GKWGIEMMHPEFKL---VDEDAPPTEESLT-PVYPTTDGVKQLTLRNLTDQALKLLDKGA 175 Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242 DLL + + S+ EA +++H P D E PA+ RL +ELL+ +++L Sbjct: 176 LADLLPEGIYDNQISLNEALHLVHRPPPDVDVHEMEEGLHPAQYRLILEELLSHHLSVLK 235 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +RK + GIPI+V + K+L +PFSPT +Q ++DI +DM M+R++QGDV Sbjct: 236 VRKLSDAQPGIPISVNQPLIDKMLAQLPFSPTGAQARVVEDIQKDMQHARPMMRLVQGDV 295 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A +A+ AG Q +MAP +LA+QH + + + I V + G + Sbjct: 296 GSGKTLVAALAALSAIGAGHQVALMAPTELLAEQHANNFRGWLEPLGIEVGWLAGKLKGK 355 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL----TQKA 418 R + L R+ G +++GTHA+FQ+S+ Y +L LVIVDEQHRFGV QRL L Q+ Sbjct: 356 ARNEVLARLEAGDIQMLVGTHAIFQESVTYQQLALVIVDEQHRFGVHQRLALRDKGEQQG 415 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH L+MTATPIPRTL +T+ D+D S I E P GR P++TV++P R +VIER++ Sbjct: 416 RYPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVQTVVLPDTRRADVIERVRQA 475 Query: 479 LSE-GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 + G++AYW+C I+E + ++ + +L + ++HGR+ +K VM Sbjct: 476 CKDNGRQAYWVCTLIDESEVLECQAAEDAAVTLRTALPDLQVGLVHGRLKPAEKAQVMAD 535 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK+G LL+ATTVIEVG+DV +ASI+IIEN E GLAQLHQLRGRVGRG S C+L+Y Sbjct: 536 FKDGKLDLLVATTVIEVGVDVPNASIMIIENPERLGLAQLHQLRGRVGRGAVESQCVLMY 595 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 PLSK + RL VL+ + DGF IA+ DL+ R GE +G KQ+GM + IA Sbjct: 596 QSPLSKTATQRLGVLRESNDGFYIAQRDLEIRGPGEFMGTKQTGMAELKIA 646 >gi|237749374|ref|ZP_04579854.1| ATP-dependent DNA helicase recG [Oxalobacter formigenes OXCC13] gi|229380736|gb|EEO30827.1| ATP-dependent DNA helicase recG [Oxalobacter formigenes OXCC13] Length = 680 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 251/666 (37%), Positives = 377/666 (56%), Gaps = 23/666 (3%) Query: 42 IDLLFYHPSSFIDRHYRPKISEISEERI--VTITGYISQHSSFQLQKRRPYKILLNDGTG 99 ++L+ + PS + D ++E RI + G I+ S Q + RR + L+DG Sbjct: 18 MELVLHLPSRYEDETKLTSLAEAMFRRIGHIQTEGVITL-SEIQYRPRRQLVVFLSDGAN 76 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA- 158 ++ L F + K + G+++ G++++ N + MVHP Y D N PL +A Sbjct: 77 QLVLRFLHFYASQQKQLAL-GKRVRARGELRQGFNGMEMVHPVYKI---VDENTPLPDAL 132 Query: 159 --VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216 VY G+S + +K I EAL R+ L + + LL K P ++ +HNP Sbjct: 133 TPVYPTSEGVSQNFLRKAINEALERID-LSDTLPDALLNKLDLPGFEKSIRYLHNPPANA 191 Query: 217 D----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272 D + T PA ER+ +DELLA Q+++ + +++ + G + + +R++PF+ Sbjct: 192 DENALLDRTHPAWERMKFDELLAQQLSMRRAQIARRRQKSNVLKAPGSLTKAFIRSLPFT 251 Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332 T QE + +I +D+ + M R+LQGDVGSGKT+VA IA A++ G Q +MAP I Sbjct: 252 LTDEQEKVVAEIREDLVKAWPMQRLLQGDVGSGKTVVAAIAACQAIDNGFQVAMMAPTEI 311 Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392 LA+QH++ + ++ I V + G+M + + + L I G+A I+GTHAL Q+S+++ Sbjct: 312 LAEQHFQRLNEWMAPLGISVVWLNGSMKKKAKEEVLSLIGSGEAQFIVGTHALIQESVRF 371 Query: 393 YKLILVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 L L I+DEQHRFGV QRL L K + PH L+M+ATPIPRTL +T D+D+S Sbjct: 372 ANLGLAIIDEQHRFGVGQRLVLRNKGGNAESIIPHQLMMSATPIPRTLAMTFYADLDVSV 431 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 I + P GRKP+ T +I R DEVIER+ G++ YW+CP IEE + ++ VE Sbjct: 432 IAKLPPGRKPVVTRLIDQKRRDEVIERIHAATLGGRQVYWVCPLIEESEALQLQTAVETH 491 Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 L E S+ +IHGRM +K++VM F +L+ATTVIEVG+DV +AS++IIE Sbjct: 492 AILTEALNELSVGLIHGRMKAAEKQAVMTDFLEKRIHVLVATTVIEVGVDVPNASLMIIE 551 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626 +AE FGL+QLHQLRGRVGRG S C+L+Y PL + RL ++ T DGF+I++ DL+ Sbjct: 552 HAERFGLSQLHQLRGRVGRGSIDSVCLLMYQKPLGDTAKKRLMTMRETNDGFVISQRDLE 611 Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD-PDLTSVRGQSI-RIL 684 R GE LG +QSG A E L+ A A+ +L PD ++ + + R L Sbjct: 612 IRGPGEFLGARQSGQAMLRFADLEKDVDLIGKAASLAEDLLNGKLPDSDTIMSKHLARWL 671 Query: 685 LYLYQY 690 Y +Y Sbjct: 672 DYREEY 677 >gi|254427398|ref|ZP_05041105.1| ATP-dependent DNA helicase RecG [Alcanivorax sp. DG881] gi|196193567|gb|EDX88526.1| ATP-dependent DNA helicase RecG [Alcanivorax sp. DG881] Length = 703 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 258/653 (39%), Positives = 370/653 (56%), Gaps = 28/653 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLLF+ P + DR I + E V I G + + +RR + DGTG +T Sbjct: 35 DLLFHLPFRYEDRTRISPIGSLRPETGVVIEGQVMA-ADVIFGRRRSLLCKVADGTGMVT 93 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE----A 158 L FY T KN GR I V G+ + + HP Y + D P +E Sbjct: 94 L-RFYHFTAAQKNNLERGRTIRVYGEPRPGSAGLEFYHPEYQL-DYADSGLPPLEKALTP 151 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216 VY G+S + + +AL L P E I LL + PS+ +A + +HNP Sbjct: 152 VYPTTDGVSQKTLRNLTGQALHYLHAHPPQELIPAQLLDQSGLPSLTQALSKLHNPNPDD 211 Query: 217 D----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272 E PA +RL +E++A Q+ +L ++ +K P + +K+ ++PF+ Sbjct: 212 PVNLLLEGKHPAVKRLVMEEMVAHQLGML-QKRAGQKAFHAPRLSGRTLFEKLQASLPFA 270 Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332 T +Q+ I +++ DM++ + MLR++QGDVGSGKTLVA A AA+E+G Q +MAP + Sbjct: 271 LTGAQQRVIGELMGDMAKPHPMLRLVQGDVGSGKTLVAAAAALAAMESGYQVALMAPTEL 330 Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392 LA+QH + + + I V + G++ RR+ +A+G A I++GTHALFQ+++Q+ Sbjct: 331 LAEQHRDNFRHWLAPLGIEVHWLAGSLGVKARRETNAALANGSARIVVGTHALFQEAVQF 390 Query: 393 YKLILVIVDEQHRFGVQQRLKLTQK--------ATAPHVLLMTATPIPRTLVLTSLGDID 444 ++L L I+DEQHRFGVQQRL L +K + PH L +TATPIPRTL ++ GD+D Sbjct: 391 HRLGLTIIDEQHRFGVQQRLALREKGRFDTVNGSQVPHQLTLTATPIPRTLAMSVYGDLD 450 Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL--SEGKK---AYWICPQIEEKKESN 499 S I E P GRKPI T+++P +R +VIER+ G+K AYW+C IEE +E Sbjct: 451 TSVIDEMPPGRKPIDTLVLPESRRPQVIERINDACRPDSGRKNTQAYWVCTLIEESEELQ 510 Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 ++ F L I ++HGRM +K M F G +LLIATTVIEVG+DV Sbjct: 511 AQAAEATFEELQIALPDLCIELVHGRMKAKEKAERMARFSRGDAQLLIATTVIEVGVDVP 570 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618 +A+++++ENAE GLAQLHQLRGRVGRG E S C+LLY PLS RL+V+++T DGF Sbjct: 571 NATLMVMENAERLGLAQLHQLRGRVGRGGEQSYCLLLYKNPLSLTGKRRLAVMRDTTDGF 630 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671 +IAEEDLK R GE LG +Q+G F IA ++L+E A+ A ++ P Sbjct: 631 IIAEEDLKLRGPGEWLGTRQTGDLAFRIADLVRDEALMEPAKDVANKLMHDCP 683 >gi|294142859|ref|YP_003558837.1| ATP-dependent DNA helicase RecG [Shewanella violacea DSS12] gi|293329328|dbj|BAJ04059.1| ATP-dependent DNA helicase RecG [Shewanella violacea DSS12] Length = 691 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 261/702 (37%), Positives = 390/702 (55%), Gaps = 34/702 (4%) Query: 10 FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69 P++ +GV KK + L+K+ DLLF+ P + DR I+ + Sbjct: 6 LVPVTDLKGVAKKMAERLAKL------GIHTVQDLLFHLPLRYEDRTQIYPIASLYPGSY 59 Query: 70 VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 TI I Q S ++R + D TG ITL FF KN G I G+I Sbjct: 60 GTIEAVI-QSSQIIQGRKRMMTCTVRDDTGYITLRFFNFSVAQ-KNCLVNGTSIRAYGEI 117 Query: 130 KKLKNRIIMVHPHY-IFHNSQD-VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--- 184 ++ K++ ++HP Y + H D V + VY GL + K+ +AL+ L + Sbjct: 118 RRGKHQAEIIHPEYKLIHEDDDLVMSDTLTPVYPTTEGLKQASWIKLTDQALAMLDLDGL 177 Query: 185 ---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQ 237 LP ++ + L K+ A ++H P + PA++RL +ELLA Sbjct: 178 QELLPPQLQPNNLTLKA------ALQLLHRPNNQVSLFDLEQGHHPAQQRLIQEELLAHN 231 Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 +++L +R++ ++ + + GK+ L+ +PF PT +Q+ +I D+ + + M+R+ Sbjct: 232 LSMLKLRQRSNRDHAVSLTATGKLLNPFLQALPFKPTGAQQRVGVEICSDLEKSSPMMRL 291 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 +QGDVGSGKTLVA A A+E G Q +MAP +LA+QH E + + + V + G Sbjct: 292 VQGDVGSGKTLVAAFAALQAIENGYQVAMMAPTELLAEQHAENFALWFEPLGLKVGRLAG 351 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 + R ++L+ I G+++++IGTHA+FQD + + L L+I+DEQHRFGV QRL L +K Sbjct: 352 KIKGKARAQSLQDIESGESNMVIGTHAIFQDQVVFNNLALIIIDEQHRFGVHQRLGLREK 411 Query: 418 ATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV + R +EVIE Sbjct: 412 GINQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAVADMRRNEVIE 471 Query: 474 RLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKE 531 R++ +G++ YW+C IEE + ++ + L I +IHGRM +K+ Sbjct: 472 RVRHAATHDGRQTYWVCTLIEESEVLECQAAEDTAAELTLALPELKIGLIHGRMKSAEKQ 531 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 ++M FK+G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S Sbjct: 532 AIMAEFKSGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASH 591 Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 C+L+Y PLS + RL VL+++ DGF+IA++DL+ R GE+LG KQ+G+ IA Sbjct: 592 CVLMYKAPLSPTAIKRLGVLRDSNDGFIIAQKDLEIRGPGEVLGTKQTGIADMKIADLVR 651 Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693 +L+ +K A HI+ Q PD +V G R L QY +A Sbjct: 652 DQALIPHIQKLAVHIMEQVPD--NVDGIVQRWLGDREQYVQA 691 >gi|113461597|ref|YP_719666.1| ATP-dependent DNA helicase RecG [Haemophilus somnus 129PT] gi|112823640|gb|ABI25729.1| ATP-dependent DNA helicase [Haemophilus somnus 129PT] Length = 693 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 254/690 (36%), Positives = 389/690 (56%), Gaps = 28/690 (4%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 M FL+ + PL++ GVG + L +I DLLF+ P + DR Sbjct: 1 MGGQFLDAI--PLTSLSGVGAAIAEKLGRI------GLFSLQDLLFHLPIRYEDRTRITP 52 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 I ++ ++ TI G I Q Q +R + L+DGT +I L FF M KN F G Sbjct: 53 IIDLRIDQHATIEG-IVQTCDIQFGRRPVLVVTLSDGTAKIALRFFNFNAGM-KNGFQLG 110 Query: 121 RKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEA 178 ++ G+IK+ + + HP Y I +++ + + +Y+ GL + +K+ +A Sbjct: 111 ARVKAFGEIKRGRFMAEIHHPEYEIIRDNRPLQLAETLTPIYATTEGLKQNTLRKLTEQA 170 Query: 179 LSRLPVLPEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYD 231 L+ L +P +LL + P S+ +A ++H P E PA+ RL ++ Sbjct: 171 LALLEKMPL---AELLPRAFNPHDFSLKQAIYVLHRPPPDISLELLEQGKHPAQLRLIFE 227 Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 ELLA +A+ +R + +P+ + + Q L +P+ PT +Q+ + +I D+ + Sbjct: 228 ELLAHNLAMQKVRCGSQHFSALPLRYQTALKQNFLDLLPYQPTNAQQRVVAEIEYDLGRS 287 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351 M+R++QGDVGSGKTLV +A A++ G Q +M P ILA+QH + + + I Sbjct: 288 FPMMRLVQGDVGSGKTLVVALAALTAIDNGKQVALMVPTEILAEQHTANFQHWFEPLGIK 347 Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411 V +TG + R+ LE I+ G +++GTHALFQD +++ +L+LV++DEQHRFGV QR Sbjct: 348 VGCLTGKVKGKSRQATLEEISQGSIQMVVGTHALFQDDVKFAELVLVVIDEQHRFGVHQR 407 Query: 412 LKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467 L L +K PH L+MTATPIPRTL + + D+DIS I E P GR PI+T+ + R Sbjct: 408 LMLREKGKYAGIYPHQLIMTATPIPRTLAMVAYADLDISIIDELPPGRTPIQTIAVSEER 467 Query: 468 IDEVIERL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRM 525 E++ R+ ++E ++AYW+C I+E + ++ L + I +IHGRM Sbjct: 468 RTEIVARVYNACVNEKRQAYWVCTLIDESEVLEAQAAESIAEDLQKALPVLRIGLIHGRM 527 Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585 +K+ VM FKN LL+ATTVIEVG+DV +AS++IIENAE GLAQLHQLRGRVGR Sbjct: 528 KASEKQEVMRQFKNAELNLLVATTVIEVGVDVPNASLMIIENAERLGLAQLHQLRGRVGR 587 Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645 G S C+L+Y PLSK S RL V+++++DGF I+E+DL+ R GE+LG KQ+G+ +F Sbjct: 588 GSTASYCVLMYKSPLSKVSRKRLEVMRSSQDGFFISEQDLEIRGPGEVLGTKQTGVAEFK 647 Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDLTS 675 +A +L + A+ ++T+ P L Sbjct: 648 VADLIRDRKMLPTVQHYARLLITRSPKLAD 677 >gi|300714630|ref|YP_003739433.1| ATP-dependent DNA helicase RecG [Erwinia billingiae Eb661] gi|299060466|emb|CAX57573.1| ATP-dependent DNA helicase RecG [Erwinia billingiae Eb661] Length = 693 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 251/670 (37%), Positives = 379/670 (56%), Gaps = 26/670 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG + L+K+ DLL + P + DR I+++ T Sbjct: 10 PLNSLSGVGASQAGKLAKL------GLVTVQDLLLHLPLRYEDRTQLYAINDLLPNIYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + Q S ++R ++DG+G +TL FF M KN G+++T G++K+ Sbjct: 64 VEGEVLQ-SDISFGRKRMLTCQISDGSGILTLRFFNFNAGM-KNSLSPGKRVTAYGEVKR 121 Query: 132 LKNRIIMVHPHYIF---HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLP 186 + ++HP Y H+ ++ L VYS G+ + + +AL+ L + Sbjct: 122 GQRGAEIIHPEYRIQGDHSGVELQETLT-PVYSTTEGIRQATLRNLTDQALALLDTCAIA 180 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNP---RKAKDFE-WTSPARERLAYDELLAGQIALLL 242 E + +L Q S+ +A +H P D E PA+ RL +ELLA +++L Sbjct: 181 ELLPPELSQ--GMISLKDALRTLHRPPPDMALADLESGKHPAQRRLIMEELLAHNLSMLA 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R ++ + + ++ K+L +PFSPT +Q +++I QD+ M+R++QGDV Sbjct: 239 VRAGAQRYHALSMPARHDLSNKLLAALPFSPTGAQARVVREIEQDLVHDYPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA + + G Q +MAP +LA+QH +++ + I V + G Sbjct: 299 GSGKTLVAALTALNVIAYGKQVALMAPTELLAEQHANNFRQWFEPLGIEVGWLAGKQKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 359 ARLAQQEAIASGQVSMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGEEQG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I R+K Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRRPDIIARVKSA 478 Query: 479 LS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 S EG++AYW+C IEE ++ ++ + L ++ ++HGRM +K++VM + Sbjct: 479 CSDEGRQAYWVCTLIEESEQLEAQAAEATWEELKLALPELNVGLVHGRMKPSEKQAVMQA 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK G LLIATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLY Sbjct: 539 FKLGEIHLLIATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PLSK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G +F +A +++ Sbjct: 599 KAPLSKTAQKRLQVLRDSNDGFVIAQCDLEIRGPGEMLGTRQTGNAEFKVADLLRDAAMI 658 Query: 657 EIARKDAKHI 666 ++ A+HI Sbjct: 659 PEVQRVARHI 668 >gi|284049968|ref|ZP_06380178.1| ATP-dependent DNA helicase RecG [Arthrospira platensis str. Paraca] Length = 822 Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust. Identities = 246/648 (37%), Positives = 384/648 (59%), Gaps = 25/648 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99 DLL+Y+P ID + I E+ VTI + + + F K R IL + D TG Sbjct: 153 DLLYYYPRDHIDYARQVPIKELEPGETVTIVAEVKRCNCFSSPKNRQLTILELIVKDRTG 212 Query: 100 EITLLFFYRKTEM--------LKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV 151 ++ + FY K + G I +G +KK K I + +P + D Sbjct: 213 QLKISRFYAGNRYSNKGWQHKQKYNYPPGAIIAASGLVKKNKYGITLDNPELEILDRADS 272 Query: 152 NFPLIE-----AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206 + ++ VY L G+ DL +K ++ AL LPE + L +K I++A Sbjct: 273 HAASMKIGRVLPVYPLSEGIGADLVRKAVLAALPAANKLPESLPPKLREKYQLIEISDAI 332 Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK--EIGIPINVEGKIAQK 264 IH P + +W + AR RL +DE QI LL R+Q K E + +G++ ++ Sbjct: 333 TNIHFP---PNRDWLAAARRRLVFDEFFYLQIGLL-QRRQVSKTNEKSAALLPQGELIEQ 388 Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324 + +PF TK+Q+ I++IL D++ + M R++QGDVG+GKT+VA++AM AA++AG Q Sbjct: 389 FYKMLPFELTKAQKRVIEEILTDLNSEEPMNRLIQGDVGAGKTVVAVVAMLAAIQAGYQT 448 Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384 +MAP +LA+QHY+ + + + VE++TG+ A RR+ ++ G+ +++GTHA Sbjct: 449 ALMAPTEVLAEQHYQKLVGWLNLMHLPVELLTGSTKTAKRRQIHAQLQTGELPVLVGTHA 508 Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444 L QD + ++KL LV++DEQHRFGV QR KL QK +PHVL MTATPIPRTL LT GD+D Sbjct: 509 LIQDPVNFHKLGLVVIDEQHRFGVHQRAKLQQKGESPHVLTMTATPIPRTLSLTLHGDLD 568 Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504 +S++ E P GR+PI+T ++ + E + + +++G++ Y + P +EE ++ + RS V Sbjct: 569 VSQLDELPPGRQPIQTTMLSGRKRQEAYDLISREVAQGRQVYVVLPLVEESEKLDVRSAV 628 Query: 505 ERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 E L +IA++HGRMS +KE+ + F+ G +L++TTV+EVG+DV +A++ Sbjct: 629 EEHQKLQTKIFPELAIALLHGRMSSQEKEAAIAKFREGETNILVSTTVVEVGVDVPNATV 688 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622 ++IENAE FGL+QLHQLRGRVGRG S C+L+ S + RL VL+ ++DGF IAE Sbjct: 689 MLIENAERFGLSQLHQLRGRVGRGAHKSYCLLMSGSS-SPEAKQRLQVLEQSQDGFFIAE 747 Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670 D++ R G++LG +QSG+P F +A +LE+AR+ A+ ++ +D Sbjct: 748 MDMELRGPGQVLGTRQSGLPDFALASLVEDREVLELAREAAQKVIQKD 795 >gi|74314113|ref|YP_312532.1| ATP-dependent DNA helicase RecG [Shigella sonnei Ss046] gi|73857590|gb|AAZ90297.1| DNA helicase [Shigella sonnei Ss046] gi|323166861|gb|EFZ52600.1| ATP-dependent DNA helicase RecG [Shigella sonnei 53G] Length = 693 Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|324111546|gb|EGC05527.1| ATP-dependent DNA helicase RecG [Escherichia fergusonii B253] Length = 693 Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust. Identities = 258/676 (38%), Positives = 383/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAAQSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLEIGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R +++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDTRRNDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L +I ++HGRM +K++VM Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|322716726|gb|EFZ08297.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 704 Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust. Identities = 256/676 (37%), Positives = 382/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI DLL + P + DR + I E+ T Sbjct: 21 PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 74 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 75 VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 132 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPV--L 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 133 GKYGTEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 190 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q S+ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 191 AELLPPELAQ--GMMSLPEALRTLHRPPPMLQLADLETGKHPAQRRLILEELLAHNLSML 248 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L ++PF PT +Q + +I +DM+ M+R++QGD Sbjct: 249 ALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGD 308 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + + V + G Sbjct: 309 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKG 368 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R+ E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 369 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 428 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R E+I+R++ Sbjct: 429 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 488 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +EG++AYW+C IEE ++ + L +I ++HGRM +K++VM Sbjct: 489 ACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 548 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG +S C+LL Sbjct: 549 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVVSHCVLL 608 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 609 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAI 668 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 669 IPEVQRIARHIHERYP 684 >gi|256021344|ref|ZP_05435209.1| ATP-dependent DNA helicase RecG [Shigella sp. D9] gi|300815108|ref|ZP_07095333.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 107-1] gi|300532000|gb|EFK53062.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 107-1] Length = 693 Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|168260500|ref|ZP_02682473.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205350535|gb|EDZ37166.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 693 Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust. Identities = 256/676 (37%), Positives = 382/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI DLL + P + DR + I E+ T Sbjct: 10 PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q S+ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L ++PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + + V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R+ E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R E+I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +EG++AYW+C IEE ++ + L +I ++HGRM +K++VM Sbjct: 478 ACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +FK G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 AFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRIARHIHERYP 673 >gi|15833781|ref|NP_312554.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. Sakai] gi|82546079|ref|YP_410026.1| ATP-dependent DNA helicase RecG [Shigella boydii Sb227] gi|161367493|ref|NP_290232.2| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 EDL933] gi|168748697|ref|ZP_02773719.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. EC4113] gi|168753477|ref|ZP_02778484.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. EC4401] gi|168759773|ref|ZP_02784780.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. EC4501] gi|168766073|ref|ZP_02791080.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. EC4486] gi|168772379|ref|ZP_02797386.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. EC4196] gi|168779808|ref|ZP_02804815.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. EC4076] gi|168785529|ref|ZP_02810536.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. EC869] gi|168798622|ref|ZP_02823629.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. EC508] gi|195936213|ref|ZP_03081595.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. EC4024] gi|208809627|ref|ZP_03251964.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. EC4206] gi|208814424|ref|ZP_03255753.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. EC4045] gi|208820291|ref|ZP_03260611.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. EC4042] gi|209397244|ref|YP_002273132.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. EC4115] gi|217325846|ref|ZP_03441930.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. TW14588] gi|254795607|ref|YP_003080444.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. TW14359] gi|261224165|ref|ZP_05938446.1| ATP-dependent DNA helicase [Escherichia coli O157:H7 str. FRIK2000] gi|261254775|ref|ZP_05947308.1| ATP-dependent DNA helicase [Escherichia coli O157:H7 str. FRIK966] gi|291285023|ref|YP_003501841.1| ATP-dependent DNA helicase recG [Escherichia coli O55:H7 str. CB9615] gi|20139447|sp|Q8XD86|RECG_ECO57 RecName: Full=ATP-dependent DNA helicase recG gi|13364002|dbj|BAB37950.1| DNA helicase RecG [Escherichia coli O157:H7 str. Sakai] gi|81247490|gb|ABB68198.1| DNA helicase [Shigella boydii Sb227] gi|187771588|gb|EDU35432.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. EC4196] gi|188016894|gb|EDU55016.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. EC4113] gi|189002582|gb|EDU71568.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. EC4076] gi|189358845|gb|EDU77264.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. EC4401] gi|189364763|gb|EDU83182.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. EC4486] gi|189369873|gb|EDU88289.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. EC4501] gi|189374240|gb|EDU92656.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. EC869] gi|189378859|gb|EDU97275.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. EC508] gi|208729428|gb|EDZ79029.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. EC4206] gi|208735701|gb|EDZ84388.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. EC4045] gi|208740414|gb|EDZ88096.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. EC4042] gi|209158644|gb|ACI36077.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. EC4115] gi|209754518|gb|ACI75566.1| DNA helicase RecG [Escherichia coli] gi|209754520|gb|ACI75567.1| DNA helicase RecG [Escherichia coli] gi|209754522|gb|ACI75568.1| DNA helicase RecG [Escherichia coli] gi|209754524|gb|ACI75569.1| DNA helicase RecG [Escherichia coli] gi|209754526|gb|ACI75570.1| DNA helicase RecG [Escherichia coli] gi|217322067|gb|EEC30491.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. TW14588] gi|254595007|gb|ACT74368.1| ATP-dependent DNA helicase [Escherichia coli O157:H7 str. TW14359] gi|290764896|gb|ADD58857.1| ATP-dependent DNA helicase recG [Escherichia coli O55:H7 str. CB9615] gi|320177350|gb|EFW52352.1| ATP-dependent DNA helicase RecG [Shigella dysenteriae CDC 74-1112] gi|320185702|gb|EFW60460.1| ATP-dependent DNA helicase RecG [Shigella flexneri CDC 796-83] gi|320191295|gb|EFW65945.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. EC1212] gi|320639559|gb|EFX09167.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. G5101] gi|320644998|gb|EFX14028.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H- str. 493-89] gi|320650265|gb|EFX18754.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H- str. H 2687] gi|320655617|gb|EFX23545.1| ATP-dependent DNA helicase RecG [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320666365|gb|EFX33364.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. LSU-61] gi|326337348|gb|EGD61183.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. 1044] gi|326339846|gb|EGD63653.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str. 1125] gi|332089455|gb|EGI94559.1| ATP-dependent DNA helicase RecG [Shigella boydii 3594-74] Length = 693 Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|62182238|ref|YP_218655.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129871|gb|AAX67574.1| DNA helicase, resolution of Holliday junctions, branch migration [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 693 Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust. Identities = 256/676 (37%), Positives = 382/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI DLL + P + DR + I E+ T Sbjct: 10 PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPV--L 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGTEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q S+ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPMLQLADLETGKHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L ++PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + + V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R+ E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R E+I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +EG++AYW+C IEE ++ + L +I ++HGRM +K++VM Sbjct: 478 ACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG +S C+LL Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVVSHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAI 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRIARHIHERYP 673 >gi|12518411|gb|AAG58796.1|AE005592_7 DNA helicase, resolution of Holliday junctions, branch migration [Escherichia coli O157:H7 str. EDL933] Length = 704 Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 21 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 74 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 75 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 132 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 133 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 190 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 191 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 248 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 249 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 308 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + I V + G Sbjct: 309 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKQKG 368 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 369 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 428 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 429 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 488 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 489 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 548 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 549 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 608 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 609 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 668 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 669 IPEVQRLARHIHERYP 684 >gi|110643893|ref|YP_671623.1| ATP-dependent DNA helicase RecG [Escherichia coli 536] gi|191170316|ref|ZP_03031869.1| ATP-dependent DNA helicase RecG [Escherichia coli F11] gi|300983467|ref|ZP_07176614.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 200-1] gi|110345485|gb|ABG71722.1| ATP-dependent DNA helicase RecG [Escherichia coli 536] gi|190909124|gb|EDV68710.1| ATP-dependent DNA helicase RecG [Escherichia coli F11] gi|300306931|gb|EFJ61451.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 200-1] gi|324012713|gb|EGB81932.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 60-1] Length = 693 Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D + PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLDTGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDAPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM DK++VM Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPADKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|157155919|ref|YP_001465133.1| ATP-dependent DNA helicase RecG [Escherichia coli E24377A] gi|157077949|gb|ABV17657.1| ATP-dependent DNA helicase RecG [Escherichia coli E24377A] Length = 693 Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|300939292|ref|ZP_07153966.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 21-1] gi|300455799|gb|EFK19292.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 21-1] Length = 693 Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust. Identities = 258/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVAAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM DK++VM Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPADKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|91794823|ref|YP_564474.1| ATP-dependent DNA helicase RecG [Shewanella denitrificans OS217] gi|91716825|gb|ABE56751.1| ATP-dependent DNA helicase RecG [Shewanella denitrificans OS217] Length = 691 Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust. Identities = 266/701 (37%), Positives = 395/701 (56%), Gaps = 36/701 (5%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +GV KK + L+K+ DLLF+ P + DR I+ + T Sbjct: 8 PVTELKGVAKKMAERLAKL------GIQTVQDLLFHLPLRYEDRTQVYPIASLPPGSYGT 61 Query: 72 ITGYISQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 I +I HSS LQ RR + + D TG +TL FF T +N G I G+I+ Sbjct: 62 IEAHI--HSSQILQGRRRMLVCQVRDNTGSLTLKFF-NFTMAQRNSMQNGALIRAYGEIR 118 Query: 131 KLKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPV---- 184 + ++ +VHP Y +S + P + +Y GL + K+ +AL L Sbjct: 119 RGSHQAEIVHPDYKIIDSDESFTPSETLSPIYPTTEGLKQASWLKLTEQALVMLAQGGLV 178 Query: 185 --LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQI 238 LPE + + L S+ +A I+H P E PA++RL +ELLA + Sbjct: 179 ERLPEQLRPNNL------SLPQALQILHRPPNHVSQEALEQGQHPAQQRLIQEELLAHNL 232 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 ++L +R++ ++ +P+ G++ L ++PFSPT +Q+ DI D+ + M+R++ Sbjct: 233 SMLKLRQRSNQDSAMPMAASGRLLNPFLASLPFSPTGAQQRVGIDISTDLEKPQPMMRLV 292 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKTLVA +A A+E G Q +MAP +LA+QH + + I V + G Sbjct: 293 QGDVGSGKTLVAALAALQAIENGYQVAMMAPTELLAEQHSANFSAWFEPLGIKVGWLAGK 352 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + R ++LE IA G A +++GTHALFQ ++ + KL L+I+DEQHRFGV QRL+L +K Sbjct: 353 LKGKARAQSLEDIASGAAQMVVGTHALFQQNVAFNKLALIIIDEQHRFGVHQRLELREKG 412 Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 + PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++VI R Sbjct: 413 VSQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRREQVIAR 472 Query: 475 L-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532 + + ++ ++ YW+C I+E + ++ + L + ++HGRM DK++ Sbjct: 473 VQQAAKTDKRQTYWVCTLIDESEVLECQAAEDTAAELAIALPELKVGLVHGRMKSADKQA 532 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 VM FK G LL+ATTVIEVG+DV +AS+++IEN E GLAQLHQLRGRVGRG S C Sbjct: 533 VMAQFKMGELDLLVATTVIEVGVDVPNASLMVIENPERLGLAQLHQLRGRVGRGAIASHC 592 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +LLY PLS + RL VL+++ DGF+IA++DL+ R GE+LG KQ+G+ + IA Sbjct: 593 VLLYKAPLSYTATKRLGVLRDSNDGFVIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRD 652 Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693 L+ +K A H++ Q P+ V G R L + QY +A Sbjct: 653 QYLIPHIQKLAVHMMQQAPE--QVDGIITRWLGHRQQYVQA 691 >gi|218702421|ref|YP_002410050.1| ATP-dependent DNA helicase RecG [Escherichia coli IAI39] gi|218372407|emb|CAR20281.1| ATP-dependent DNA helicase [Escherichia coli IAI39] Length = 693 Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R +++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRNDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|145630714|ref|ZP_01786493.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae R3021] gi|144983840|gb|EDJ91290.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae R3021] Length = 693 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/678 (37%), Positives = 394/678 (58%), Gaps = 26/678 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI G N DLLF+ P + DR I+ + E+ T Sbjct: 10 PLTSLSGVGATISNKLAKI---GIHN---LQDLLFHLPIRYEDRTRITPIANLRPEQYFT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G I Q +R + L+DGT +I L FF M +N F G ++ G++K+ Sbjct: 64 IEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVGVRVKAFGEVKR 121 Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 ++ + HP Y + N+ V + +YS GL + +K+ +AL+ +L + Sbjct: 122 GRHMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQALA---LLDKVQ 178 Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242 ++L + P S+ EA ++H P E PA++RL ++ELLA +A+ Sbjct: 179 IAEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQK 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R ++ +P++ + + Q+ L +PF PT +Q+ + DI QD+ + M+R++QGDV Sbjct: 239 VRLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A++ G Q +MAP ILA+QH +++ + I V + G + Sbjct: 299 GSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R+ LE+I G +++GTHALFQ+ +++ L LVI+DEQHRFGV QRL L +K Sbjct: 359 SRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRLMLREKGEKAG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T D+D S I E P GR PI TV++ R E++ R+K Sbjct: 419 FYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRTEIVMRVKNA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 ++E ++AYW+C I+E + ++ + L + +I ++HGRM +K+ +M + Sbjct: 479 CVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDIMAA 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FKN LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S C+L+Y Sbjct: 539 FKNAELNLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PPL K S RL VL++++DGF+I+E+DL+ R GE+LG KQ+G+ + +A ++ Sbjct: 599 KPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRVANLMRDRKMI 658 Query: 657 EIARKDAKHILTQDPDLT 674 + AK ++ + PDL Sbjct: 659 PTVQHYAKSLIQKYPDLA 676 >gi|225629771|ref|ZP_03787715.1| ATP-dependent DNA helicase RecG [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591375|gb|EEH12471.1| ATP-dependent DNA helicase RecG [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 551 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 234/540 (43%), Positives = 325/540 (60%), Gaps = 14/540 (2%) Query: 64 ISEERIVTITGYIS---QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 +S+ R+ T +I+ +H S + RPYKI++ + I ++FF + L +F G Sbjct: 7 LSDARVGEFTTFIAKVYEHQSPTF-RGRPYKIVVESESQYIFIVFFNYSVKYLYKLFPIG 65 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN----FPLIEAVYSLPTGLSVDLFKKIIV 176 + ++GK++K + HP Y+ S D+N IE VY L G++ II Sbjct: 66 ANVIISGKLEKFAEHWQITHPDYV---SLDINQFKEIACIEPVYQLCRGITNKRIGNIIS 122 Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 L LP LPEWI+ L+++K + S E+ +H P + E R+RLAYDEL A Sbjct: 123 SNLKELPDLPEWIDDTLIKQKKWLSWRESIIKLHRPSSLAEAE---VCRKRLAYDELFAY 179 Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 Q+AL L RK KE G + K +++L + F T Q AI +I + K RM+ Sbjct: 180 QLALKLARKNHVKERGREFIILSKYKEQVLNELSFQLTNDQTRAIDEISERQKSKYRMIS 239 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 +LQGDVGSGKT+VAL AM VE QA +MAP ILA+QHY +I++ T I V ++T Sbjct: 240 LLQGDVGSGKTVVALFAMINVVENNMQAALMAPTTILAEQHYNWIEEVLSCTDIKVALLT 299 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G + R+ + +A G +I+IGTHALFQ ++ + L L ++DEQ RFGV QR +L Sbjct: 300 GKTSRKERKIIMNELASGVLNIVIGTHALFQANVTFKNLGLAVIDEQQRFGVMQRNRLVG 359 Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 K +L +TATPIPRTL GD++ S + EKP R PIKTV + I+R+ +VIE+LK Sbjct: 360 KGENADILFVTATPIPRTLQQAMYGDVECSILKEKPKSRLPIKTVTMNISRVPDVIEKLK 419 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 ++ G+KAYWICP IEE +E+N + RF L + F + IIHG+++ K+ VM S Sbjct: 420 GAINRGEKAYWICPYIEENEETNIAAAEMRFQELQKTFLDKVGIIHGKLTQEQKDQVMFS 479 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK LL+ATTVIEVGIDV DA+I+IIE AE FGL+QLHQLRGRVGRG + S C+LLY Sbjct: 480 FKRNEFSLLVATTVIEVGIDVPDATIMIIEYAEQFGLSQLHQLRGRVGRGNKPSFCVLLY 539 >gi|293463976|ref|ZP_06664390.1| ATP-dependent DNA helicase RecG [Escherichia coli B088] gi|291321608|gb|EFE61044.1| ATP-dependent DNA helicase RecG [Escherichia coli B088] gi|323944105|gb|EGB40185.1| ATP-dependent DNA helicase RecG [Escherichia coli H120] Length = 693 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIEHDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM ++K++VM Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPVEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|242241346|ref|YP_002989527.1| ATP-dependent DNA helicase RecG [Dickeya dadantii Ech703] gi|242133403|gb|ACS87705.1| ATP-dependent DNA helicase RecG [Dickeya dadantii Ech703] Length = 693 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 258/676 (38%), Positives = 382/676 (56%), Gaps = 26/676 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLST GVG + L++I ET DLL + P + DR + I+++ T Sbjct: 10 PLSTLAGVGASQATKLARI-----GLET-VEDLLLHLPLRYEDRTHLYPINDLLPGIYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + S +RR ++DG+G +TL FF M KN G++I G+I++ Sbjct: 64 VEGEVLR-SDISFGRRRMLTCQISDGSGMLTLRFFNFNAGM-KNSLSPGQRILAYGEIRR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLPVLP-- 186 K ++HP Y + L E VY G+ +K+ +AL L P Sbjct: 122 GKLGAEIIHPEYRL-QGETAQLELQETLTPVYPTTEGIRQATLRKLTDQALQLLDTHPID 180 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLL 242 E + +++ + S+ +A +H P E PA++RL +ELLA +++L Sbjct: 181 ELLPQEM--RHGLISLPDALRTLHRPPPDVRLEALEQGKHPAQQRLIMEELLAHNLSMLA 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R ++ P+ + ++ Q++L +PFSPT +Q+ + +I QDMSQ M+R++QGDV Sbjct: 239 VRAGAQRYHAQPLAPDERLKQRLLAALPFSPTAAQQRVVAEIEQDMSQPFPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 299 GSGKTLVAALAALRAITHGRQVALMAPTELLAEQHAINFRNWFAPLGIDVGWLAGKQKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R+ + IA G +++GTHA+FQ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 359 ARQAQQDAIASGAVAMVVGTHAIFQQQVQFNGLALVIIDEQHRFGVHQRLALWEKGEEQG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R +VI+R++ Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRADVIQRVRHA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L E ++AYW+C IEE ++ L +I ++HGRM +K++VM++ Sbjct: 479 CLQEERQAYWVCTLIEESDLLEAQAAEATLQELQAALPDLTIGLVHGRMKTQEKQAVMEA 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLY Sbjct: 539 FKTGRLHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PLSK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G +F +A +L+ Sbjct: 599 KSPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGNAEFKVADLLRDQALI 658 Query: 657 EIARKDAKHILTQDPD 672 ++ A+HI P+ Sbjct: 659 PQVQRVARHIHAHYPE 674 >gi|332282577|ref|ZP_08394990.1| ATP-dependent DNA helicase recG [Shigella sp. D9] gi|332104929|gb|EGJ08275.1| ATP-dependent DNA helicase recG [Shigella sp. D9] Length = 704 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 21 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 74 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 75 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 132 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 133 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 190 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 191 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 248 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 249 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 308 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + I V + G Sbjct: 309 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKQKG 368 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 369 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 428 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 429 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 488 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 489 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 548 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 549 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 608 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 609 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 668 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 669 IPEVQRLARHIHERYP 684 >gi|331679744|ref|ZP_08380414.1| ATP-dependent DNA helicase RecG [Escherichia coli H591] gi|331072916|gb|EGI44241.1| ATP-dependent DNA helicase RecG [Escherichia coli H591] Length = 704 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 21 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 74 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 75 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 132 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 133 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 190 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 191 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 248 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 249 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 308 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 309 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 368 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 369 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 428 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 429 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 488 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM ++K++VM Sbjct: 489 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPVEKQAVMA 548 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 549 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 608 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 609 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 668 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 669 IPEVQRLARHIHERYP 684 >gi|283836030|ref|ZP_06355771.1| ATP-dependent DNA helicase RecG [Citrobacter youngae ATCC 29220] gi|291068214|gb|EFE06323.1| ATP-dependent DNA helicase RecG [Citrobacter youngae ATCC 29220] Length = 693 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/671 (38%), Positives = 379/671 (56%), Gaps = 28/671 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+T GVG S L+KI DLL + P + DR + I E+ T Sbjct: 10 PLNTLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +LLQ S+ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 AELLPPELLQ--GMMSLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P+N + ++ ++L +PF PT +Q +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLNPDDRLKNQLLAALPFKPTGAQARVTAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + + V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRSWFEPLGVEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDIIDRVRN 477 Query: 478 VLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 + EG++AYW+C IEE ++ + L +I ++HGRM +K+SVM Sbjct: 478 ACTHEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQSVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGTAEFKVADLLRDQAI 657 Query: 656 LEIARKDAKHI 666 + ++ A+HI Sbjct: 658 IPEVQRIARHI 668 >gi|191167788|ref|ZP_03029594.1| ATP-dependent DNA helicase RecG [Escherichia coli B7A] gi|300907695|ref|ZP_07125323.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 84-1] gi|301303887|ref|ZP_07210006.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 124-1] gi|190902131|gb|EDV61874.1| ATP-dependent DNA helicase RecG [Escherichia coli B7A] gi|300400631|gb|EFJ84169.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 84-1] gi|300840850|gb|EFK68610.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 124-1] gi|315254040|gb|EFU34008.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 85-1] Length = 693 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIEHDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|281180698|dbj|BAI57028.1| DNA helicase RecG [Escherichia coli SE15] Length = 693 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 258/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A AV G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAVAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMT 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|170766831|ref|ZP_02901284.1| ATP-dependent DNA helicase RecG [Escherichia albertii TW07627] gi|170124269|gb|EDS93200.1| ATP-dependent DNA helicase RecG [Escherichia albertii TW07627] Length = 693 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 258/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAAQSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLETCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R +++I R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRNDIIARVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L +I ++HGRM +K++VM Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|73542491|ref|YP_297011.1| ATP-dependent DNA helicase RecG [Ralstonia eutropha JMP134] gi|72119904|gb|AAZ62167.1| ATP-dependent DNA helicase RecG [Ralstonia eutropha JMP134] Length = 728 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 256/664 (38%), Positives = 381/664 (57%), Gaps = 40/664 (6%) Query: 40 RFIDLLFYHPSSFIDRHYRPKISEISEE----RIVTITG-YISQHSSFQLQKRRPYKILL 94 R +DL+ + P + D I+E + + G IS +F+ RR + + Sbjct: 55 RSVDLVLHLPMRYEDETTLMPIAEAIRRSGLGQPAQVEGEVISNEVTFR--PRRQLVVKI 112 Query: 95 NDGTGEITLLF--FY-RKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV 151 D +GE+TL F FY +T+ ++ EG ++ V G+++ MVHP + + D Sbjct: 113 ADDSGELTLRFLNFYGSQTKQME----EGVRLRVRGEVRGGFFGAEMVHP-TVRPVAPDE 167 Query: 152 NFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQ----KKSFPSIAEAF 206 P + VY G+S +K I AL+R P LPE + +L+ K +AE+ Sbjct: 168 PLPDRLTPVYPATAGISQAYLRKAISGALARTP-LPETLPPAVLEGPVAKLKLRPLAESL 226 Query: 207 NIIHNP----RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI--NVEGK 260 ++H P +A + + PA +R+ +DELLA QI+L + ++E P EG Sbjct: 227 RLLHTPPPQESEAALADRSHPAWQRIKFDELLAQQISLRRA-HEARREKNAPSMPRQEGG 285 Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320 + + L +PF T +Q+ +++I DM+ ++ M R+LQGDVGSGKT+VA +A A++A Sbjct: 286 LLTRFLAALPFRLTGAQQRVVEEIAADMTAQHPMHRLLQGDVGSGKTIVAALAACQAIDA 345 Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380 G QA IMAP ILA+QHY + + + + V + G++ +R+A+ R+ G+A + I Sbjct: 346 GYQAAIMAPTEILAEQHYRKLSAWLEPLGVPVVWLAGSLKAREKREAVARVESGEARLAI 405 Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-----------TAPHVLLMTAT 429 GTHAL QD++++ +L L +VDEQHRFGV QRL L KA T PH L+M+AT Sbjct: 406 GTHALIQDTVRFARLGLSVVDEQHRFGVAQRLALRGKAGSAEPAQTAPDTVPHQLMMSAT 465 Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489 PIPRTL +T D+D+S I E P GR PI T ++ R DEVI+R+ +EG++ YW+C Sbjct: 466 PIPRTLAMTYYADLDVSVIDELPPGRTPIVTRLVNDERRDEVIDRIHHAAAEGRQVYWVC 525 Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548 P IEE + ++ VE + +L + ++HGR+ +K SVMD F ++L+AT Sbjct: 526 PLIEESEALQLQTAVETYETLVAALPDLRVGLVHGRLPPAEKASVMDDFSANRLQVLVAT 585 Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608 TVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+L+Y PLS + RL Sbjct: 586 TVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCLLMYQAPLSPTARERL 645 Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668 + ++ T DGF IA DL R GE LG +QSG A L+E AR+ A+ +L Sbjct: 646 ATMRETTDGFEIARRDLDIRGPGEFLGARQSGEAMLRFADLNTDAWLVEYAREAAQVMLA 705 Query: 669 QDPD 672 Q P+ Sbjct: 706 QFPE 709 >gi|193070345|ref|ZP_03051287.1| ATP-dependent DNA helicase RecG [Escherichia coli E110019] gi|192956284|gb|EDV86745.1| ATP-dependent DNA helicase RecG [Escherichia coli E110019] Length = 693 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLQTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|293413086|ref|ZP_06655754.1| ATP-dependent DNA helicase RecG [Escherichia coli B354] gi|291468733|gb|EFF11226.1| ATP-dependent DNA helicase RecG [Escherichia coli B354] Length = 693 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLTKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|315633797|ref|ZP_07889087.1| DNA helicase RecG [Aggregatibacter segnis ATCC 33393] gi|315477839|gb|EFU68581.1| DNA helicase RecG [Aggregatibacter segnis ATCC 33393] Length = 693 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 265/679 (39%), Positives = 385/679 (56%), Gaps = 34/679 (5%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+ GVG + L K+ G N DLLF+ P + DR I+++ ++ T Sbjct: 10 PLTAISGVGAAIAEKLGKL---GIFN---LQDLLFHLPLRYEDRTRITPIADLQADQYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G + Q + Q +R + L+DGT ++ L FF M KN G ++ G++++ Sbjct: 64 IEGVV-QSAEVQFGRRPMLMVYLSDGTSKLALRFFNFNAGM-KNSLQPGARVKAFGEVRR 121 Query: 132 LKNRIIMVHPHY-IFHNSQDVNFPLIEA-----VYSLPTGLSVDLFKKIIVEALSRLPVL 185 + + HP Y I H+ N PLI A +Y GL +K+I +AL L Sbjct: 122 GRFMAEIHHPEYQIIHD----NKPLILAETLTPIYPATEGLKQTSLRKLIAQALQVLEKT 177 Query: 186 PEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQI 238 P +LL + P + A +HNP E PA++RL ++ELLA + Sbjct: 178 PL---AELLPTEFNPHPFDLKSAIQFLHNPPPDVSLVTLEEGKHPAQQRLIFEELLAYNL 234 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 A+ +R + + + + Q+ L +PF PTK+Q +DI QD++Q M+R++ Sbjct: 235 AMQKVRSGIQANLAESLIPRSNLKQRFLAQLPFQPTKAQLRVTEDIEQDIAQIYPMMRLV 294 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKTLVA +A A++ G Q +MAP ILA+QH +++ + I V + G Sbjct: 295 QGDVGSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHATNFRRWFEPLGIQVGWLAGK 354 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + R LE+I +G +++GTHALFQD + ++ L LVIVDEQHRFGV QRL L +K Sbjct: 355 VKGKQRIAELEKIKNGTVQMVVGTHALFQDEVAFHNLSLVIVDEQHRFGVHQRLMLREKG 414 Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 PH L+MTATPIPRTL +T D+D S I E P GR PI T+ I R E+IER Sbjct: 415 NQAGVYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTIAISEERRAEIIER 474 Query: 475 LKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532 + V S E ++AYW+C I+E + ++ LH+ I ++HGRM +K++ Sbjct: 475 VNVACSQEKRQAYWVCTLIDESEVLEAQAAEAVAEDLHKILPHLRIGLVHGRMKPSEKQA 534 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 VM+ FK LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S C Sbjct: 535 VMEQFKLAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFC 594 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +L+Y PPL K S RL V+++T+DGF+I+E+DL+ R GE+LG KQ+G+ +F +A Sbjct: 595 VLMYKPPLGKISQKRLQVMRDTQDGFVISEKDLEIRGPGEVLGTKQTGITEFKVANLMRD 654 Query: 653 DSLLEIARKDAKHILTQDP 671 +L + AK ++ + P Sbjct: 655 RKMLPTVQFYAKQLVLKYP 673 >gi|300822422|ref|ZP_07102562.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 119-7] gi|301325335|ref|ZP_07218842.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 78-1] gi|331670493|ref|ZP_08371332.1| ATP-dependent DNA helicase RecG [Escherichia coli TA271] gi|300525069|gb|EFK46138.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 119-7] gi|300847862|gb|EFK75622.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 78-1] gi|320201322|gb|EFW75903.1| ATP-dependent DNA helicase RecG [Escherichia coli EC4100B] gi|324116009|gb|EGC09935.1| ATP-dependent DNA helicase RecG [Escherichia coli E1167] gi|331062555|gb|EGI34475.1| ATP-dependent DNA helicase RecG [Escherichia coli TA271] Length = 693 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPV--L 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM ++K++VM Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPVEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|325499458|gb|EGC97317.1| ATP-dependent DNA helicase RecG [Escherichia fergusonii ECD227] Length = 693 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 258/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAAQSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLEIGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R +++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDTRRNDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L +I ++HGRM +K++VM Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|307128794|ref|YP_003880810.1| ATP-dependent DNA helicase [Dickeya dadantii 3937] gi|306526323|gb|ADM96253.1| ATP-dependent DNA helicase [Dickeya dadantii 3937] Length = 693 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 252/675 (37%), Positives = 388/675 (57%), Gaps = 24/675 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLST GVG + L+++ ET DLL + P + DR + I+++ T Sbjct: 10 PLSTLAGVGASQAEKLARL-----GLET-VQDLLLHLPLRYEDRTHLYLINDVLPGMYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + S +RR ++DG+G +TL FF M KN G+++ G++++ Sbjct: 64 VEGDVLR-SDITFGRRRMLTCQISDGSGMLTLRFFNFNAAM-KNSLSPGQRVLAYGEVRR 121 Query: 132 LKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187 K M+HP Y + S V + VY G+ +K+ +AL L P E Sbjct: 122 GKLGGEMIHPEYRVQGESATVELQETLTPVYPTTEGIRQATLRKLTDQALELLNTHPIDE 181 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNP----RKAKDFEWTSPARERLAYDELLAGQIALLLM 243 + +++ + S+ +A +H P + A+ + PA++RL +ELLA +++L + Sbjct: 182 LLPQEM--RHGLISLPDALRTLHRPPPDVQLAELEQGKHPAQQRLVMEELLAHHLSMLAV 239 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 R ++ + + + + Q++L +PFSPT +Q+ + +I QDM++ M+R++QGDVG Sbjct: 240 RAGAQRHRALALGPKDNLKQQLLAALPFSPTGAQQRVVAEIEQDMNKPFPMMRLVQGDVG 299 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKTLVA +A A+ G Q +MAP +LA+QH +++ + + V + G Sbjct: 300 SGKTLVAALAALQAIAHGKQVALMAPTELLAEQHAANFRRWFEPLGVEVGWLAGKQKGKA 359 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420 R+ E IA GQ +++GTHA+FQ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 360 RQAQQEAIASGQVSMVVGTHAIFQQQVQFNGLALVIIDEQHRFGVHQRLALWEKGEEQGF 419 Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R D++I+R++ Sbjct: 420 HPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRDDIIQRVRNAC 479 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 L EG++AYW+C IEE + ++ L +I ++HGRM +K++VM +F Sbjct: 480 LQEGRQAYWVCTLIEESELLEAQAAEATCQELKAALPDLTIGLVHGRMKAQEKQAVMAAF 539 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 K LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLY Sbjct: 540 KTNQLHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 599 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PLSK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G F +A +L+ Sbjct: 600 SPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGNAAFRVADLLRDQALIP 659 Query: 658 IARKDAKHILTQDPD 672 ++ ++H+ P+ Sbjct: 660 QVQRVSRHLHEHYPE 674 >gi|162138336|ref|YP_543156.2| ATP-dependent DNA helicase RecG [Escherichia coli UTI89] gi|218560724|ref|YP_002393637.1| ATP-dependent DNA helicase RecG [Escherichia coli S88] gi|218367493|emb|CAR05275.1| ATP-dependent DNA helicase [Escherichia coli S88] gi|294491775|gb|ADE90531.1| ATP-dependent DNA helicase RecG [Escherichia coli IHE3034] gi|307628725|gb|ADN73029.1| ATP-dependent DNA helicase RecG [Escherichia coli UM146] gi|315285420|gb|EFU44865.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 110-3] gi|323949891|gb|EGB45775.1| ATP-dependent DNA helicase RecG [Escherichia coli H252] gi|323954945|gb|EGB50724.1| ATP-dependent DNA helicase RecG [Escherichia coli H263] Length = 693 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 258/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A AV G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAVAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|260771993|ref|ZP_05880910.1| ATP-dependent DNA helicase RecG [Vibrio metschnikovii CIP 69.14] gi|260612860|gb|EEX38062.1| ATP-dependent DNA helicase RecG [Vibrio metschnikovii CIP 69.14] Length = 615 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 240/588 (40%), Positives = 354/588 (60%), Gaps = 18/588 (3%) Query: 94 LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153 ++DG G +TL FF T +KN F G+ I G+IK + + ++HP Y + Sbjct: 6 ISDGNGSLTLRFF-NFTAAMKNSFAIGKVIYAFGEIKPGNHGLEIIHPDYQLYTQPQETQ 64 Query: 154 P---LIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPEWIEKDLLQKKSFPSIAEAFNI 208 P + VY GL + + +AL+ L + E + L K+ S+A+A +I Sbjct: 65 PEEATLTPVYPTTEGLRQSTLRSLTEQALALLDKAAVQELMPDGLYDKQI--SLAQALHI 122 Query: 209 IHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK 264 +H P D E PA+ RL +ELLA +++L +R + +++ +P+ +G++ ++ Sbjct: 123 LHRPPTDIDLSQFDEGRHPAQVRLIIEELLAQNLSMLAVRSKGQQDAALPLITQGQLKKQ 182 Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324 L +PF PT++Q +++I D+SQ + M+R++QGDVGSGKTLVA +A A+E G Q Sbjct: 183 FLAQLPFQPTQAQTRVVQEIETDLSQAHPMMRLVQGDVGSGKTLVAALAALRAIEHGYQV 242 Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384 +MAP +LA+QH + I V + G + R+ L +IA G A +I+GTHA Sbjct: 243 ALMAPTELLAEQHAANFANWFAPLGIQVAWLAGKLKGKARQTELTQIASGTAKMIVGTHA 302 Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSL 440 LFQ+ +++ L LVI+DEQHRFGV QRL+L +K PH L+MTATPIPRTL +T+ Sbjct: 303 LFQEQVEFDHLALVIIDEQHRFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAY 362 Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VVLSEGKKAYWICPQIEEKKESN 499 D++ S I E P GR PI+TV IP + ++IER++ L E K+AYW+C I+E + Sbjct: 363 ADLETSIIDELPPGRTPIQTVAIPDTKRSDIIERVRHACLHEHKQAYWVCTLIDESEVLE 422 Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 ++ + L T I ++HGRM +K+ VM +FK+ LL+ATTVIEVG+DV Sbjct: 423 AQAAADTAEELQRQLTELKIGLVHGRMKPAEKQQVMQAFKDNQLHLLVATTVIEVGVDVP 482 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618 +AS++IIEN E GLAQLHQLRGRVGRG S C+LLY PLSK + RL+VL+ + DGF Sbjct: 483 NASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYRSPLSKTAQKRLAVLRESNDGF 542 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666 +IA+ DL+ R GE+LG KQ+G+ F IA L+ ++ A+HI Sbjct: 543 VIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQRLIPEVQRIARHI 590 >gi|291571510|dbj|BAI93782.1| ATP-dependent DNA helicase RecG [Arthrospira platensis NIES-39] Length = 822 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 251/678 (37%), Positives = 393/678 (57%), Gaps = 32/678 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99 DLL+Y+P ID + I E+ VTI + + + F K R IL + D TG Sbjct: 153 DLLYYYPRDHIDYARQVPIKELEPGETVTIVAEVKRCNCFSSPKNRHLTILELIVKDRTG 212 Query: 100 EITLLFFYRKTEM--------LKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV 151 ++ + FY K + G I +G +KK K I + +P + D Sbjct: 213 QLKISRFYAGNRYSNKGWQHKQKYNYPPGAIIAASGLVKKNKYGITLDNPELEILDRADS 272 Query: 152 NFPLIE-----AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206 + ++ VY L G+ DL +K ++ AL LPE + L +K I++A Sbjct: 273 HAASMKIGRVLPVYPLSEGIGADLVRKAVLAALPAANKLPESLPPKLREKYQLIEISDAI 332 Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK--EIGIPINVEGKIAQK 264 IH P + +W + AR RL +DE QI LL R+Q K E + +G++ ++ Sbjct: 333 TNIHFP---PNRDWLASARRRLVFDEFFYLQIGLL-QRRQVSKTNEKSAALLPQGELIEQ 388 Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324 + +PF TK+Q+ I +IL D++ + M R++QGDVG+GKT+VA++AM AA++AG Q Sbjct: 389 FYKMLPFELTKAQKRVIGEILTDLNSEEPMNRLIQGDVGAGKTVVAVVAMLAAIQAGYQT 448 Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384 +MAP +LA+QHY+ + + + VE++TG+ A RR+ ++ G+ +++GTHA Sbjct: 449 ALMAPTEVLAEQHYQKLVGWLNLMHLPVELLTGSTKTAKRRQIHAQLQTGELPVLVGTHA 508 Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444 L QD + ++KL LV++DEQHRFGV QR KL QK +PHVL MTATPIPRTL LT GD+D Sbjct: 509 LIQDPVNFHKLGLVVIDEQHRFGVHQRAKLQQKGESPHVLTMTATPIPRTLSLTLHGDLD 568 Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504 +S++ E P GR+PI+T ++ + E + + +++G++ Y + P +EE ++ + RS V Sbjct: 569 VSQLDELPPGRQPIQTTMLSGRKRQEAYDLISREVAQGRQVYVVLPLVEESEKLDVRSAV 628 Query: 505 ERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 E L +IA++HGRMS +KE+ + F+ G +L++TTV+EVG+DV +A++ Sbjct: 629 EEHQKLQTKIFPELAIALLHGRMSSQEKEAAIAKFREGETNILVSTTVVEVGVDVPNATV 688 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622 ++IENAE FGL+QLHQLRGRVGRG S C+L+ S + RL VL+ ++DGF IAE Sbjct: 689 MLIENAERFGLSQLHQLRGRVGRGAHKSYCLLMSGSS-SPEAKQRLQVLEQSQDGFFIAE 747 Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682 D++ R G++LG +QSG+P F +A +LE+AR+ A+ ++ +D L R Sbjct: 748 MDMELRGPGQVLGTRQSGLPDFALASLVEDREVLELAREAAQKVIQKDYTLE-------R 800 Query: 683 ILLYLYQYNEAFQFIRAG 700 + ++N +Q + G Sbjct: 801 WPAMVAEWNRRYQKMMGG 818 >gi|68250339|ref|YP_249451.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae 86-028NP] gi|68058538|gb|AAX88791.1| ATP-dependent DNA helicase [Haemophilus influenzae 86-028NP] Length = 693 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 258/678 (38%), Positives = 393/678 (57%), Gaps = 26/678 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI G N DLLF+ P + DR I+ + E+ T Sbjct: 10 PLTSLSGVGAAISNKLAKI---GIQN---LQDLLFHLPIRYEDRTRITPIANLRPEQYFT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G I Q +R + L+DGT +I L FF M +N F G ++ G++K+ Sbjct: 64 IEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQAGVRVKAFGEVKR 121 Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 ++ + HP Y + N+ V + +YS GL + +K+ +AL+ +L + Sbjct: 122 GRHMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQALT---LLDKVQ 178 Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242 ++L + P S+ EA ++H P E PA++RL ++ELLA +A+ Sbjct: 179 IAEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQK 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R ++ +P++ + + Q+ L +PF PT +Q+ + DI QD+ + M+R++QGDV Sbjct: 239 VRLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A++ G Q +MAP ILA+QH +++ + I V + G + Sbjct: 299 GSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R+ LE+I G +++GTHALFQ+ +++ L LVI+DEQHRFGV QRL L +K Sbjct: 359 SRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRLMLREKGEKAG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T D+D S I E P GR PI TV++ R E++ R+K Sbjct: 419 FHPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRAEIVMRVKNA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 ++E ++AYW+C I+E + ++ + L + +I ++HGRM +K+ VM Sbjct: 479 CVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMR 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FKN LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S C+L+Y Sbjct: 539 FKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PPL K S RL VL++++DGF+I+E+DL+ R GE+LG KQ+G+ + IA ++ Sbjct: 599 KPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRIANLMRDRKMI 658 Query: 657 EIARKDAKHILTQDPDLT 674 + AK ++ + PD+ Sbjct: 659 PTVQHYAKSLIQKYPDVA 676 >gi|170681314|ref|YP_001745952.1| ATP-dependent DNA helicase RecG [Escherichia coli SMS-3-5] gi|170519032|gb|ACB17210.1| ATP-dependent DNA helicase RecG [Escherichia coli SMS-3-5] Length = 693 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 258/676 (38%), Positives = 380/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVAAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM DK++VM Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPADKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|117918805|ref|YP_867997.1| ATP-dependent DNA helicase RecG [Shewanella sp. ANA-3] gi|117611137|gb|ABK46591.1| ATP-dependent DNA helicase RecG [Shewanella sp. ANA-3] Length = 696 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 262/700 (37%), Positives = 404/700 (57%), Gaps = 30/700 (4%) Query: 10 FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69 P++ +GV K+ + L+K+ T DLLF+ P + DR I+ + Sbjct: 11 LVPITDLKGVAKRVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALMPGNY 64 Query: 70 VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 TI I S Q+ + R ++ N D TG ++L FF +N G I G Sbjct: 65 GTIEAEIQ---STQIIQGRKRMLVCNVRDNTGSMSLRFFNFSMAQ-RNAMQNGLMIRAYG 120 Query: 128 KIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLP-- 183 +I++ ++ +VHP Y I + +D++ + +Y GL + K+ +AL L Sbjct: 121 EIRRGNHQAEIVHPEYKIVYPGEDIHLSDTLTPIYPTTEGLKQASWIKLTEQALELLEDG 180 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK---DFEWTS-PARERLAYDELLAGQIA 239 L E + +L Q S S+ +A +H P D E PA++RL +ELLA ++ Sbjct: 181 GLTELLPANL-QPNSM-SLKQALQTLHRPHAGISQFDLELGQHPAQQRLVQEELLAHNLS 238 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 +L +R++ + + ++ G++ L ++PF PT +Q+ + +I +D++Q + M+R++Q Sbjct: 239 MLRLRQRSNLDAAVTMHASGQLLNPFLASLPFKPTGAQQRVVAEIGKDLAQPHPMMRLVQ 298 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKTLVA +A A+E G Q +MAP +LA+QH + + + V + G + Sbjct: 299 GDVGSGKTLVAALAALQAIENGYQVAMMAPTELLAEQHATNFAAWFEPLGLKVGWLAGKL 358 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R ++LE I G A I+IGTHA+FQ + + KL L+I+DEQHRFGV QR+ L +K Sbjct: 359 KGKARAQSLEDIESGAAQIVIGTHAIFQQQVTFNKLALIIIDEQHRFGVHQRMGLREKGI 418 Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP +R +EV+ER+ Sbjct: 419 NQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDSRRNEVLERV 478 Query: 476 K-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533 + V+++ ++AYW+C IEE + ++ + L + SI ++HGRM +K+ + Sbjct: 479 RNSVVTDKRQAYWVCTLIEESEVLECQAAEDTAEELRQALPELSIGLVHGRMKSAEKQKI 538 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M FK G+ LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C+ Sbjct: 539 MADFKAGSIHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVASHCV 598 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 LLY PLS+ + RL+VL+ + DGF+IA++DL+ R GE+LG KQ+G+ + IA Sbjct: 599 LLYKAPLSQTASQRLNVLRQSNDGFVIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRDQ 658 Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693 +L+ +K A H+++Q P+ SV R L + QY +A Sbjct: 659 ALIPHIQKLASHVMSQAPE--SVDAIIHRWLGHRQQYVQA 696 >gi|323173261|gb|EFZ58890.1| ATP-dependent DNA helicase RecG [Escherichia coli LT-68] Length = 693 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYTDLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|16767029|ref|NP_462644.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167549006|ref|ZP_02342765.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992300|ref|ZP_02573398.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233269|ref|ZP_02658327.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168818424|ref|ZP_02830424.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194472508|ref|ZP_03078492.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|198244513|ref|YP_002217704.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|16422313|gb|AAL22603.1| DNA helicase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194458872|gb|EDX47711.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197939029|gb|ACH76362.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205325757|gb|EDZ13596.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329408|gb|EDZ16172.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332535|gb|EDZ19299.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205344506|gb|EDZ31270.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|261248892|emb|CBG26746.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996008|gb|ACY90893.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160281|emb|CBW19804.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914770|dbj|BAJ38744.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320088165|emb|CBY97927.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226798|gb|EFX51848.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323132105|gb|ADX19535.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326625489|gb|EGE31834.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332990593|gb|AEF09576.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 693 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 256/676 (37%), Positives = 381/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI DLL + P + DR + I E+ T Sbjct: 10 PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q S+ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L ++PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + + V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R+ E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R E+I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +EG++AYW+C IEE ++ + L +I ++HGRM +K++VM Sbjct: 478 ACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRIARHIHERYP 673 >gi|307824309|ref|ZP_07654535.1| ATP-dependent DNA helicase RecG [Methylobacter tundripaludum SV96] gi|307734689|gb|EFO05540.1| ATP-dependent DNA helicase RecG [Methylobacter tundripaludum SV96] Length = 699 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 254/683 (37%), Positives = 380/683 (55%), Gaps = 26/683 (3%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 N L P+ G+G + + L K+ C DL+F+ P + DR I + Sbjct: 5 NALNQPVGILTGIGAQTANRLQKLGLC------TLQDLIFHLPLRYEDRTRVYPICSLKP 58 Query: 67 ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 V I+G + + + + R+ ++DGTG I+L FF+ N G I+ Sbjct: 59 GMSVLISGKV-EFTDILPRGRKSLICRISDGTGFISLKFFHFSASQ-HNALKPGTSISCF 116 Query: 127 GKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184 +++ + MVHP Y I + + + VY L GL ++ +K + +AL Sbjct: 117 AEVRYGFAGLEMVHPEYKVIANPDGCITETRLTPVYPLTEGLGQNIIRKAVRQALDLCRQ 176 Query: 185 LPE----WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAG 236 PE WI + +L++ +PS+A+A +H P ++ E + PA +RLA++ELL Sbjct: 177 DPELLTDWIPESILKQYHYPSLADAIQTLHAPDESVSIEALQNGSVPALKRLAFEELLTH 236 Query: 237 QIALLLMRKQFK--KEIGIPINVEGKIAQK-ILRNIPFSPTKSQESAIKDILQDMSQKNR 293 + L R + K + + GK A +R++PF T +Q+ I +I D ++ Sbjct: 237 FLILRTTRNKTKAWQAPSFSVGAAGKTATNHFIRSLPFKLTGAQQRVIAEIEADCRLQHP 296 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M+R++QGDVGSGKT+V+ A A+ AG Q +MAP +LA+QH + + Q V Sbjct: 297 MMRLVQGDVGSGKTVVSAYAALLALTAGYQVAVMAPTELLAEQHKRNFSIWFEGFQTQVV 356 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 +TG + R+ L+ + G A IIIGTHALFQDS+ +++L L+I+DEQHRFGV QRL Sbjct: 357 YLTGQLKGNARKTVLQALEDGTAGIIIGTHALFQDSVHFHRLGLIIIDEQHRFGVHQRLA 416 Query: 414 LTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469 L +K PH L+MTATPIPRTL + D+DIS I E P GRKPI T +IP R Sbjct: 417 LREKGQQGNIRPHQLVMTATPIPRTLAMLQYSDLDISIIDELPPGRKPIVTSVIPAERRA 476 Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDI 528 +VI+R+ + + ++ YW+C IEE + + + +L E + +A+IHGRM Sbjct: 477 DVIDRINGWVGKNRQVYWVCTLIEESEVLQCEAAEKTAETLTEALPNVRVALIHGRMKSA 536 Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588 +K++VM FKN LL+ATTVIEVG+DV +A ++IIEN E GL+QLHQLRGRVGRG + Sbjct: 537 EKDAVMQDFKNHRIDLLVATTVIEVGVDVPNAGLMIIENPERLGLSQLHQLRGRVGRGGD 596 Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648 S C+L+Y PLS + RL VL+++ DGF+IAE+DL+ R GE++G +Q+G F IA Sbjct: 597 DSYCLLMYQAPLSDTARHRLGVLRDSNDGFVIAEKDLELRGPGEVMGTRQTGQMHFKIAD 656 Query: 649 PELHDSLLEIARKDAKHILTQDP 671 LL+ ++ T P Sbjct: 657 LARDADLLDTVQQIGDSFFTHSP 679 >gi|300923463|ref|ZP_07139503.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 182-1] gi|300420290|gb|EFK03601.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 182-1] Length = 693 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPV--L 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPKYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM ++K++VM Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPVEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|194431101|ref|ZP_03063394.1| ATP-dependent DNA helicase RecG [Shigella dysenteriae 1012] gi|194420556|gb|EDX36632.1| ATP-dependent DNA helicase RecG [Shigella dysenteriae 1012] gi|332084523|gb|EGI89718.1| ATP-dependent DNA helicase RecG [Shigella dysenteriae 155-74] gi|332084834|gb|EGI90017.1| ATP-dependent DNA helicase RecG [Shigella boydii 5216-82] Length = 693 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 380/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPV--L 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIEHDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIVHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|300919780|ref|ZP_07136255.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 115-1] gi|300413133|gb|EFJ96443.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 115-1] Length = 693 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 380/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIEHDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|152972506|ref|YP_001337652.1| ATP-dependent DNA helicase RecG [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238897102|ref|YP_002921848.1| ATP-dependent DNA helicase RecG [Klebsiella pneumoniae NTUH-K2044] gi|262045612|ref|ZP_06018631.1| ATP-dependent DNA helicase RecG [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|329996956|ref|ZP_08302653.1| ATP-dependent DNA helicase RecG [Klebsiella sp. MS 92-3] gi|150957355|gb|ABR79385.1| DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238549430|dbj|BAH65781.1| ATP-dependent DNA helicase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259037038|gb|EEW38290.1| ATP-dependent DNA helicase RecG [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328539246|gb|EGF65275.1| ATP-dependent DNA helicase RecG [Klebsiella sp. MS 92-3] Length = 693 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 254/676 (37%), Positives = 380/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI DLL + P + DR + I+E+ T Sbjct: 10 PLSSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIAELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + +S+ RR ++DGTG +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NSNITFGGRRMMTCQISDGTGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DMSTPELQETLTPVYPTTEGIKQATLRKLTDQALELLETCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALL 241 E + +L Q S+ EA +H P + PA++RL +ELLA +++L Sbjct: 180 SELLPPELAQ--GMMSLPEALRTLHRPPPSLQLSELESGKHPAQQRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ +P+ + ++L ++PF PT +Q +I DM+ M+R++QGD Sbjct: 238 ALRAGAQRYHALPLGANDTLKNQLLASLPFKPTGAQARVTAEIEHDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIVHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R+ E IA G+ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARQAQQEAIASGEVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDTRRSDIIDRVRN 477 Query: 478 VLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 + EG++AYW+C IEE ++ + L +I ++HGRM +K++VM Sbjct: 478 ACTHEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +FK G LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 AFKQGEMHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPDVQRIARHIHERYP 673 >gi|256025617|ref|ZP_05439482.1| ATP-dependent DNA helicase RecG [Escherichia sp. 4_1_40B] gi|300950016|ref|ZP_07163966.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 116-1] gi|300955359|ref|ZP_07167738.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 175-1] gi|301028431|ref|ZP_07191677.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 196-1] gi|301644319|ref|ZP_07244321.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 146-1] gi|307140351|ref|ZP_07499707.1| ATP-dependent DNA helicase RecG [Escherichia coli H736] gi|299878542|gb|EFI86753.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 196-1] gi|300317731|gb|EFJ67515.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 175-1] gi|300450630|gb|EFK14250.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 116-1] gi|301077357|gb|EFK92163.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 146-1] gi|315618644|gb|EFU99230.1| ATP-dependent DNA helicase RecG [Escherichia coli 3431] Length = 693 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 380/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIEHDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIKVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|205354654|ref|YP_002228455.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858981|ref|YP_002245632.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224585542|ref|YP_002639341.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|205274435|emb|CAR39467.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206710784|emb|CAR35145.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224470070|gb|ACN47900.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|326629792|gb|EGE36135.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 693 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 256/676 (37%), Positives = 381/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI DLL + P + DR + I E+ T Sbjct: 10 PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q S+ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L ++PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + + V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R+ E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R E+I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +EG++AYW+C IEE ++ + L +I ++HGRM +K++VM Sbjct: 478 ACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAI 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRIARHIHERYP 673 >gi|170718699|ref|YP_001783891.1| ATP-dependent DNA helicase RecG [Haemophilus somnus 2336] gi|168826828|gb|ACA32199.1| ATP-dependent DNA helicase RecG [Haemophilus somnus 2336] Length = 693 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 253/690 (36%), Positives = 389/690 (56%), Gaps = 28/690 (4%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 M FL+ + PL++ GVG + L +I DLLF+ P + DR Sbjct: 1 MGGQFLDAI--PLTSLSGVGAAIAEKLGRI------GLFSLQDLLFHLPIRYEDRTRITP 52 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 I ++ ++ TI G I Q Q +R + L+DGT +I L FF M KN F G Sbjct: 53 IIDLRIDQHATIEG-IVQTCDIQFGRRPVLVVTLSDGTAKIALRFFNFNAGM-KNGFQLG 110 Query: 121 RKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEA 178 ++ G+IK+ + + HP Y I +++ + + +Y+ GL + +K+ +A Sbjct: 111 ARVKAFGEIKRGRFMAEIHHPEYEIIRDNRPLQLAETLTPIYATTEGLKQNTLRKLTEQA 170 Query: 179 LSRLPVLPEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYD 231 L+ L +P +LL + P S+ +A ++H P E PA+ RL ++ Sbjct: 171 LALLEKMPL---AELLPRAFNPHDFSLKQAIYVLHRPPPDISLELLEQGKHPAQLRLIFE 227 Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 ELLA +A+ +R + +P+ + + Q L +P+ PT +Q+ + +I D+ + Sbjct: 228 ELLAHNLAMQKVRCGSQHFSALPLRYQTALKQNFLDLLPYQPTNAQQRVVAEIEYDLGRS 287 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351 M+R++QGDVGSGKTLV +A A++ G Q +M P ILA+QH +++ + I Sbjct: 288 FPMMRLVQGDVGSGKTLVVALAALTAIDNGKQVALMVPTEILAEQHTANFQRWFEPLGIR 347 Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411 V +TG + R+ LE I+ G +++GTHALFQD +++ +L+LV++DEQHRFGV QR Sbjct: 348 VGCLTGKVKGKFRQATLEEISQGNIQMVVGTHALFQDDVKFAELVLVVIDEQHRFGVHQR 407 Query: 412 LKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467 L L +K PH L+MTATPIPRTL + + D+D S I E P GR PI+T+ + R Sbjct: 408 LMLREKGKYAGIYPHQLIMTATPIPRTLAMVAYADLDTSIIDELPPGRTPIQTIAVSEER 467 Query: 468 IDEVIERL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRM 525 E++ R+ ++E ++AYW+C I+E + ++ L + I +IHGRM Sbjct: 468 RTEIVARVYNACVNEKRQAYWVCTLIDESEVLEAQAAESIAEDLQKALPVLRIGLIHGRM 527 Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585 +K+ VM FKN LL+ATTVIEVG+DV +AS++IIENAE GLAQLHQLRGRVGR Sbjct: 528 KVSEKQEVMRQFKNAELNLLVATTVIEVGVDVPNASLMIIENAERLGLAQLHQLRGRVGR 587 Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645 G S C+L+Y PLSK S RL V+++++DGF I+E+DL+ R GE+LG KQ+G+ +F Sbjct: 588 GSTASYCVLMYKSPLSKVSRKRLEVMRSSQDGFFISEQDLEIRGPGEVLGTKQTGVAEFK 647 Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDLTS 675 +A +L + A+ ++T+ P L Sbjct: 648 VADLIRDRKMLPTVQHYARLLITRSPKLAD 677 >gi|168241924|ref|ZP_02666856.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194447704|ref|YP_002047775.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194406008|gb|ACF66227.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205338824|gb|EDZ25588.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 693 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 256/676 (37%), Positives = 381/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI DLL + P + DR + I E+ T Sbjct: 10 PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q S+ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L ++PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + + V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R+ E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R E+I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +EG++AYW+C IEE ++ + L +I ++HGRM +K++VM Sbjct: 478 ACTTEGRQAYWVCTLIEESGLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRIARHIHERYP 673 >gi|329897890|ref|ZP_08272240.1| ATP-dependent DNA helicase RecG [gamma proteobacterium IMCC3088] gi|328921016|gb|EGG28435.1| ATP-dependent DNA helicase RecG [gamma proteobacterium IMCC3088] Length = 694 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/672 (38%), Positives = 378/672 (56%), Gaps = 24/672 (3%) Query: 11 APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70 +P+S GVG K + L+ + + DL FY P + DR I + + V Sbjct: 16 SPISQLSGVGPKLAEKLATL------GLHQVKDLWFYLPLRYQDRTRLTPIGALQDGSDV 69 Query: 71 TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 I G + + ++ L +RR + L DGTG + L FF+ + + +G + G+++ Sbjct: 70 VIEGEV-RLATVTLGRRRSLVVKLQDGTGTLVLRFFH-FSRAQQQQLKQGLTLRCFGQVR 127 Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190 + N MVHP Y + A+Y TG+ ++KI V +L L V P Sbjct: 128 RGANGFEMVHPEYRRVEEGAAMEEALTAIYPTITGIGQTTWRKICVASLQVLTVNPP--- 184 Query: 191 KDLLQKKSFPSIA--EAFNIIHNPRKAKDFEWTS------PARERLAYDELLAGQIALLL 242 +LL + I +A I+H P D ++ PA+ RLA +EL+A +I+L Sbjct: 185 DELLPHEQTLGIGLVQAIKILHQP--PPDVSLSALANKQHPAQLRLALEELVAHRISLGE 242 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R + I ++ L+ PF T +Q+ I +I D+++ MLR+LQGDV Sbjct: 243 LRTLQTQHQAPQIPYREELTAAFLKAQPFQATGAQQRVIAEIGHDLTRPTPMLRLLQGDV 302 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 G+GKTLVA A A +AG Q +MAP +LA+QH+ +++ +++ + ++G Sbjct: 303 GAGKTLVAAAAALQAAQAGYQVAVMAPTELLAEQHWRNFERWFGDSKFKLAWLSGKTKGK 362 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R L IA + +++IGTHALFQ +++ L LVI+DEQHRFGV+QRL L +K A Sbjct: 363 KREATLAMIATQEVNMVIGTHALFQADVEFKHLGLVIIDEQHRFGVEQRLTLARKGKALR 422 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 PH L+MTATPIPR+L + + D+D S I E P GR+ I TV+I +R VIER+ Sbjct: 423 PHQLVMTATPIPRSLSMVAYADLDCSIIDELPPGRQAISTVLIDSSRRASVIERVAHACR 482 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539 EG++AYW+C IEE ++ ++ SL I +IHGR+ +KES+M SF Sbjct: 483 EGRQAYWVCTLIEENEQLAAQAAEAVSESLQTQLADLRIGLIHGRLKSTEKESIMASFAA 542 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+L+Y P Sbjct: 543 GHLDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTIASHCVLMYQSP 602 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 LS+ RL VLK+++DGF IAE+DL R GE+LG +Q+G+ F +A+ LH+ LL+ A Sbjct: 603 LSQTGKARLRVLKDSQDGFYIAEQDLLLRGPGELLGTRQTGLMAFRVAELPLHEDLLDSA 662 Query: 660 RKDAKHILTQDP 671 A ++ Q P Sbjct: 663 AAIADDLMQQRP 674 >gi|315296995|gb|EFU56275.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 16-3] Length = 693 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|117625924|ref|YP_859247.1| ATP-dependent DNA helicase RecG [Escherichia coli APEC O1] gi|237703446|ref|ZP_04533927.1| ATP-dependent DNA helicase RecG [Escherichia sp. 3_2_53FAA] gi|91074744|gb|ABE09625.1| ATP-dependent DNA helicase RecG [Escherichia coli UTI89] gi|115515048|gb|ABJ03123.1| ATP-dependent DNA helicase RecG [Escherichia coli APEC O1] gi|226902710|gb|EEH88969.1| ATP-dependent DNA helicase RecG [Escherichia sp. 3_2_53FAA] Length = 704 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 258/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 21 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 74 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 75 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 132 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 133 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 190 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 191 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 248 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 249 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 308 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A AV G Q +MAP +LA+QH + + I V + G Sbjct: 309 VGSGKTLVAALAALRAVAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 368 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 369 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 428 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 429 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 488 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 489 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 548 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 549 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 608 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 609 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 668 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 669 IPEVQRLARHIHERYP 684 >gi|30065072|ref|NP_839243.1| ATP-dependent DNA helicase RecG [Shigella flexneri 2a str. 2457T] gi|56480396|ref|NP_709432.2| ATP-dependent DNA helicase RecG [Shigella flexneri 2a str. 301] gi|110807670|ref|YP_691190.1| ATP-dependent DNA helicase RecG [Shigella flexneri 5 str. 8401] gi|30043333|gb|AAP19054.1| DNA helicase [Shigella flexneri 2a str. 2457T] gi|56383947|gb|AAN45139.2| DNA helicase [Shigella flexneri 2a str. 301] gi|110617218|gb|ABF05885.1| ATP-dependent DNA helicase recG [Shigella flexneri 5 str. 8401] gi|281603015|gb|ADA75999.1| ATP-dependent DNA helicase recG [Shigella flexneri 2002017] gi|313647473|gb|EFS11923.1| ATP-dependent DNA helicase RecG [Shigella flexneri 2a str. 2457T] gi|332749892|gb|EGJ80304.1| ATP-dependent DNA helicase RecG [Shigella flexneri K-671] gi|332750610|gb|EGJ81018.1| ATP-dependent DNA helicase RecG [Shigella flexneri 4343-70] gi|332751321|gb|EGJ81724.1| ATP-dependent DNA helicase RecG [Shigella flexneri 2747-71] gi|332764146|gb|EGJ94383.1| ATP-dependent DNA helicase RecG [Shigella flexneri 2930-71] gi|332996122|gb|EGK15749.1| ATP-dependent DNA helicase RecG [Shigella flexneri VA-6] gi|332997250|gb|EGK16866.1| ATP-dependent DNA helicase RecG [Shigella flexneri K-218] gi|333012920|gb|EGK32297.1| ATP-dependent DNA helicase RecG [Shigella flexneri K-304] Length = 693 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 380/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIEHDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|289662159|ref|ZP_06483740.1| ATP-dependent DNA helicase RecG [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 717 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 256/708 (36%), Positives = 389/708 (54%), Gaps = 52/708 (7%) Query: 3 PSFLNPLFAPLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 PS APLS+ GVG K + F ++ I DL ++ P + DR I Sbjct: 9 PSLAVTGQAPLSSLPGVGPKVADKFAARGI-------LSVQDLWWHLPLRYEDRTRLTTI 61 Query: 62 SEISEERIVTITGYISQ-HSSFQLQKRRP-YKILLNDGT-GEITLLFFYRKTEMLKNVFF 118 +++ I G + F+ RP ++ ++D + G + L FF+ + + F Sbjct: 62 AQLQSGVPAQIEGRVDAVERGFRF---RPVLRVAVSDASHGTLVLRFFHFRAAQVAQ-FA 117 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIV 176 G ++ V G K ++ +VHP Y + +D ++ VY + G+ +K+I Sbjct: 118 VGTRVRVFGTPKPGQHGWEIVHPSYRVLAPDEDAGLGDSLDPVYPVLEGVGPATLRKLIG 177 Query: 177 EALSRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPAR 225 +AL RLP + P W LQ + PS+ A +H P D PA+ Sbjct: 178 QALERLPPEAALELLPPHW-----LQDEQLPSLRAALLTMHRPPVGTDPQQLLAGAHPAQ 232 Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285 +RLA +ELLA Q++L R ++ + G + Q++ +PF T +Q+ + I Sbjct: 233 QRLAIEELLAHQLSLRRQRIALQRFHAPMLPGNGTLVQQLRSALPFQLTGAQQRVFEQIA 292 Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345 +D++Q + MLR++QGDVGSGKT+VA +A AVE G Q + AP +LA+QH ++ + Sbjct: 293 RDLAQPSPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLNNLRGWL 352 Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405 + + + + G + R A+ +A GQA +++GTHAL QD++ ++ L L I+DEQHR Sbjct: 353 EPLGVRIVWLAGKVTGKARVAAMAEVASGQAQLVVGTHALMQDAVVFHDLALAIIDEQHR 412 Query: 406 FGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461 FGV QRL L K A PH L+MTATPIPRTL +++ D+D+S I E P GR P++T+ Sbjct: 413 FGVHQRLALRDKGAAAGSVPHQLVMTATPIPRTLAMSTYADLDVSAIDELPPGRTPVQTI 472 Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--------------FRSVVERF 507 ++ R E++ER++V +EG++AYW+C IEE +E ++ F Sbjct: 473 VLSAERRPELVERIRVACAEGRQAYWVCTLIEESEEPEKGAQGQYSGPPRIEAQAAEVTF 532 Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 +L +A++HGRM +K+ M FK G LL+ATTVIEVG+DV +AS++IIE Sbjct: 533 EALSAQLPGVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIE 592 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626 NAE GLAQLHQLRGRVGRG SSC+LLY PLS + RL ++ T DGF+IAE+DL+ Sbjct: 593 NAERLGLAQLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLE 652 Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 R GE+LG +Q+G+ F IA LL + A+ +L + P++ Sbjct: 653 LRGPGELLGTRQTGLASFRIADLARDAGLLPRVQVLAERLLEEAPEIA 700 >gi|253690573|ref|YP_003019763.1| ATP-dependent DNA helicase RecG [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251757151|gb|ACT15227.1| ATP-dependent DNA helicase RecG [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 693 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 255/692 (36%), Positives = 392/692 (56%), Gaps = 38/692 (5%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 M+ LN PLST GVG + L+++ ET DLL + P + DR + Sbjct: 1 MKGRLLN--TQPLSTLTGVGASQAAKLARL-----GLET-VQDLLLHLPLRYEDRTHLYP 52 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 I ++ T+ G I + + RR ++DG+G +T+ FF M KN G Sbjct: 53 IGDLLPGMYATVEGEILR-NDITFGSRRMLTCQISDGSGMLTMRFFNFNAAM-KNSLAPG 110 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFH--NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 +++T G+IK+ K ++HP Y N+Q + VY G+ +K+ +A Sbjct: 111 QRVTAYGEIKRGKIGAEIIHPEYRVQGDNTQVELQESLTPVYPSTEGIRQATLRKLTDQA 170 Query: 179 LSRLP------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS------PARE 226 L L +LPE + + L+ S+ +A +H P D + + PA++ Sbjct: 171 LELLAANHIDELLPESLSRSLI------SLPDALRTLHRP--PPDMQLSELEHGKHPAQQ 222 Query: 227 RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQ 286 RL +ELLA +++L +R ++ P+ + + Q++L +PF+PT++QE + +I Sbjct: 223 RLIMEELLAHNLSMLAVRAGEQRHKASPLQAQDGLKQRLLAALPFNPTQAQERVVAEIEA 282 Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346 DM++ M+R++QGDVGSGKTLVA +A A+ G Q +MAP +LA+QH +++ + Sbjct: 283 DMAKDFPMMRLVQGDVGSGKTLVAALAALRAIANGKQVALMAPTELLAEQHAHNFRQWFE 342 Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 + V + G R+ + IA+GQ +++GTHA+FQ +++ L LVI+DEQHRF Sbjct: 343 PLGLEVGWLAGKQKGKARQAQQDAIANGQVSMVVGTHAIFQQQVKFNGLALVIIDEQHRF 402 Query: 407 GVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462 GV QRL L +K PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV Sbjct: 403 GVHQRLALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVA 462 Query: 463 IPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAI 520 IP +R +++IER+ EG++AYW+C IEE ++ L + + + Sbjct: 463 IPDSRRNDIIERVNSACQQEGRQAYWVCTLIEESDLLEAQAAEATSEELKAALPNLKVGL 522 Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580 +HGRM +K++VM +FK G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLR Sbjct: 523 VHGRMKAQEKQAVMQAFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLR 582 Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 GRVGRG S C+LLY P+SK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G Sbjct: 583 GRVGRGAVASHCVLLYKTPMSKTAQKRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTG 642 Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 +F +A L+ ++ A+H+ P+ Sbjct: 643 NAEFKVADLLRDQDLIPQVQRVARHLHEHYPE 674 >gi|261341740|ref|ZP_05969598.1| hypothetical protein ENTCAN_08218 [Enterobacter cancerogenus ATCC 35316] gi|288316107|gb|EFC55045.1| ATP-dependent DNA helicase RecG [Enterobacter cancerogenus ATCC 35316] Length = 693 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 256/677 (37%), Positives = 380/677 (56%), Gaps = 28/677 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI DLL + P + DR KI ++ T Sbjct: 10 PLNSLTGVGAAQSGKLAKI------GLHTVQDLLLHLPLRYEDRTQLYKIGDLLPAIYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DGTG +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNITFGGRRMMTCQISDGTGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSMPELQETLTPVYPTTEGIKQATLRKLTDQALELLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK---DFE-WTSPARERLAYDELLAGQIALL 241 E + +L Q S+ EA +H P D E T PA+ RL +ELLA +++L Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLIDLESGTHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ ++ K+L ++PF PT +Q +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSQRDELKDKLLASLPFKPTGAQARVTAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRAWFAPLGVEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGLQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GYHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRRSDIIDRVRN 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 + EG++AYW+C IEE ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACMQEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMQ 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +FK G LLIATTVIEVG+DV +AS++I+EN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 AFKQGELHLLIATTVIEVGVDVPNASLMIVENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKAPLSKTAQMRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLMRDQAM 657 Query: 656 LEIARKDAKHILTQDPD 672 + ++ A+HI + P+ Sbjct: 658 IPEVQRLARHIHERYPE 674 >gi|218697373|ref|YP_002405040.1| ATP-dependent DNA helicase RecG [Escherichia coli 55989] gi|218354105|emb|CAV00667.1| ATP-dependent DNA helicase [Escherichia coli 55989] Length = 693 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 380/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIEHDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIKVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|186477271|ref|YP_001858741.1| ATP-dependent DNA helicase RecG [Burkholderia phymatum STM815] gi|184193730|gb|ACC71695.1| ATP-dependent DNA helicase RecG [Burkholderia phymatum STM815] Length = 740 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 253/662 (38%), Positives = 378/662 (57%), Gaps = 29/662 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D I E+ I G + + +R+ + +D Sbjct: 67 TRDIDLVLHLPMRYEDETSLTPIGELLPGDIAQTEGVVYDNEIAYRPRRQLLVKMRDDAG 126 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 E+ L F +K + G ++ V G ++ + MVHP + D + PL +A Sbjct: 127 DELILRFLNFYGSQVKQMSV-GVRLRVRGDVRGGFFGMEMVHPAV---RAVDEDTPLPQA 182 Query: 159 ---VYSLPTGLSVDLFKKIIVEALSR--LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 VY G+S +K I AL+R LP +LPE IE+ L+ P++ +A +H+P Sbjct: 183 LTPVYPSTAGVSQAYLRKAIDNALARTSLPELLPEPIERQYLRPLEVPALMDAVRTLHHP 242 Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-----EGKIAQ 263 D + T PA R+ ++ELLA Q++L ++ + + E + Sbjct: 243 NSHSDETALIDGTHPAWTRIKFEELLAQQLSLKRAHEERRTRAAPAMPRRAATDETSLVA 302 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 ++L+ +PFS T +Q+ +I QD++Q + M R+LQGDVGSGKT+VA +A A A++AG Q Sbjct: 303 RLLKTLPFSLTGAQQRVCGEIAQDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQ 362 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 A +MAP ILA+QH ++ + + + V + G++ +R A+E A G A ++IGTH Sbjct: 363 AAMMAPTEILAEQHARKLRGWLEPLGVTVAWLAGSLKTKEKRSAIEAAALGTAQLVIGTH 422 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---------APHVLLMTATPIPRT 434 A+ QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRT Sbjct: 423 AIIQDAVEFARLGLVIVDEQHRFGVEQRLALRAKAQNAADGARDFQPHQLMMSATPIPRT 482 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L +T D+++S I E P GR PI T ++ R DEVI R++ G++ YW+CP IEE Sbjct: 483 LAMTYYADLEVSTIDELPPGRTPILTKLVSDGRRDEVIGRVREAALTGRQVYWVCPLIEE 542 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ VE + +L + ++HGR++ ++K SVMD+F +LL+ATTVIEV Sbjct: 543 SETLQLQTAVETYETLVAALPELRVGLVHGRLTPVEKASVMDAFGRNEVQLLVATTVIEV 602 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+LLY PLS + RL ++ Sbjct: 603 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAASVCVLLYTGPLSMTARARLQTMRE 662 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 T DGF IA DL+ R GE LG +QSG A E L+E AR+ A +L Q P++ Sbjct: 663 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPAREAATTLLAQYPNV 722 Query: 674 TS 675 + Sbjct: 723 VT 724 >gi|209921125|ref|YP_002295209.1| ATP-dependent DNA helicase RecG [Escherichia coli SE11] gi|209914384|dbj|BAG79458.1| DNA helicase RecG [Escherichia coli SE11] gi|324019691|gb|EGB88910.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 117-3] Length = 693 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 380/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIEHDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|288932986|ref|YP_003437045.1| ATP-dependent DNA helicase RecG [Klebsiella variicola At-22] gi|290511780|ref|ZP_06551148.1| ATP-dependent DNA helicase RecG [Klebsiella sp. 1_1_55] gi|288887715|gb|ADC56033.1| ATP-dependent DNA helicase RecG [Klebsiella variicola At-22] gi|289775570|gb|EFD83570.1| ATP-dependent DNA helicase RecG [Klebsiella sp. 1_1_55] Length = 693 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 254/676 (37%), Positives = 380/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI DLL + P + DR + I+E+ T Sbjct: 10 PLSSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIAELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + +S+ RR ++DGTG +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NSNITFGGRRMLTCQISDGTGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DMSTPELQETLTPVYPTTEGIKQATLRKLTDQALELLETCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALL 241 E + +L Q S+ EA +H P + PA++RL +ELLA +++L Sbjct: 180 SELLPPELAQ--GMMSLPEALRTLHRPPPSLQLSELESGKHPAQQRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ +P+ + ++L ++PF PT +Q +I DM+ M+R++QGD Sbjct: 238 ALRAGAQRYHALPLGANDTLKNQLLASLPFKPTGAQARVTAEIEHDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + I V + G Sbjct: 298 VGSGKTLVAALAAVRAIAHGKQVALMAPTELLAEQHANNFRSWFEPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R+ E IA G+ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARQAQQEAIASGEVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDTRRSDIIDRVRN 477 Query: 478 VLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 + EG++AYW+C IEE ++ + L +I ++HGRM +K++VM Sbjct: 478 ACTHEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +FK G LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 AFKQGEMHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPDVQRIARHIHERYP 673 >gi|268592266|ref|ZP_06126487.1| ATP-dependent DNA helicase RecG [Providencia rettgeri DSM 1131] gi|291312043|gb|EFE52496.1| ATP-dependent DNA helicase RecG [Providencia rettgeri DSM 1131] Length = 693 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 253/680 (37%), Positives = 389/680 (57%), Gaps = 36/680 (5%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L++ G+G S + KI N + DLL + P + D +I ++ TI Sbjct: 11 LTSLHGIGASQSEKMRKI----GLNTVQ--DLLLHFPLRYEDHTRLYQIKDLLPGTTATI 64 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 TG I Q + ++R L++DGTG +TL FF M KN EG+++T G++++ Sbjct: 65 TGEILQ-TKVVFGRKRMMTCLISDGTGNLTLRFFNFSASM-KNNLAEGKQVTAYGEVRRG 122 Query: 133 KNRIIMVHPHYIFHNSQDV-NFPLIE---AVYSLPTGLSVDLFKKIIVEALSRL------ 182 ++HP Y SQD N L E VY G+ +K++ +AL L Sbjct: 123 NTGPEIIHPEYKV--SQDTSNISLQENLTPVYPTTEGVRQATLRKVMEQALRLLDSGKIK 180 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQI 238 +LPE + + ++ S+ +A ++HNP + PA++RL +ELLA + Sbjct: 181 ELLPEELSRGMI------SLPDAIRLLHNPPPNVALIELEKGHHPAQKRLILEELLAHHL 234 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 ++L +R ++ P+ G++ ++L +PFSPT +Q + +I D+++ M+R++ Sbjct: 235 SMLAIRAGNERLYAEPLTTSGQLKSQLLAQLPFSPTNAQNRVVSEIEADLAKDAPMMRLI 294 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKTLVA +A A+E G Q +MAP ILA+QH K++ + I V + G Sbjct: 295 QGDVGSGKTLVAALAAVCAIENGKQVALMAPTEILAEQHANTFKQWLEPLGIKVGWLAGK 354 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R+ + IA G+ +++GTHA+FQ+ + + L LVI+DEQHRFGV QRL L +K Sbjct: 355 QKGKARQAQQDAIASGEVAMVVGTHAIFQEQVSFKALGLVIIDEQHRFGVHQRLALREKG 414 Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R +++IER Sbjct: 415 EQQGYHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRNDIIER 474 Query: 475 LK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532 ++ + EG++AYW+C IE+ + ++ L + ++HGRM +K+S Sbjct: 475 VRQACIEEGRQAYWVCTLIEDSELLEAQAAQVTSEELALALPELKVGLVHGRMKPAEKQS 534 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +M +FK +LL+ATTVIEVG+DV +AS++II+N E GLAQLHQLRGRVGRG S C Sbjct: 535 IMAAFKRNEIQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAIASHC 594 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +LLY PL+ + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A Sbjct: 595 VLLYKTPLTHTAKQRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRD 654 Query: 653 DSLLEIARKDAKHILTQDPD 672 +L ++ A+HI P+ Sbjct: 655 QYMLPEVQRLARHIQQNYPE 674 >gi|91205818|ref|YP_538173.1| ATP-dependent DNA helicase RecG [Rickettsia bellii RML369-C] gi|91069362|gb|ABE05084.1| ATP-dependent DNA helicase RecG [Rickettsia bellii RML369-C] Length = 740 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 264/719 (36%), Positives = 386/719 (53%), Gaps = 76/719 (10%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 LF+P+ F + + L ++ G +N DLLFY P S+ + P ++E+ E Sbjct: 9 LFSPIKAFINIREDTIAALKRL---GISN---IRDLLFYSPVSYQTKTLSPNLTEVREGD 62 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++ + I + + + +P +I ++ TG + L+FF++ + N G K T++GK Sbjct: 63 LIQVE-VIIESVNLPNKSHQPLRITASNDTGSLLLVFFHKPPPFIFNKLKVGSKHTISGK 121 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLPV- 184 ++ + + + HP +I VN L +E +YSL +S I++A+ Sbjct: 122 VQFFDHHLQISHPEFI------VNPKLTKELEPIYSLTYLISNKQLYSYIIKAIDMFEEK 175 Query: 185 --------LPEWIEKDLLQKKSFPSI---AEAFNIIHN-----------PRKAKDFEWTS 222 + E++++ L K ++ EAF + P+ K Sbjct: 176 CKNVQDKEVKEYLDEVLESLKGVHALRHCEEAFMPMRQSSDVKSLISGLPQPLKGLRNDD 235 Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282 ++ LA EL+A QI+L R Q + G ++ IL ++ F T Q+ I+ Sbjct: 236 VHKKSLATKELIANQISLFKARTQIVGKHGNIYPKAKQVQTNILNSLGFELTSYQQQVIE 295 Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342 +I +D + M+R+LQGDVGSGKTLVAL+ M G QA +MAP +LA QHYEF Sbjct: 296 EIEKDQASGIEMMRLLQGDVGSGKTLVALLTMTNVAAVGFQATLMAPTDLLANQHYEFFV 355 Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402 + +NT I + ++TG + + R+ + ++ +G+ I+IGTHALFQ+ + + KL +++DE Sbjct: 356 RALKNTDIKIGLLTGKILGSARKNIMMQLENGEIDILIGTHALFQEKVNFKKLGYIVIDE 415 Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462 QHRFGVQQRL L K P VL+MTATPIPR+L LT GD+ ISK+ KP R PI T Sbjct: 416 QHRFGVQQRLDLINKGINPDVLVMTATPIPRSLALTMFGDMTISKLQGKPKNRLPIATNT 475 Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-------------------------- 496 + IN+I+ ++E + L G++ YWICP IE+ K Sbjct: 476 MSINKIEHILEAINKKLVAGERIYWICPLIEQAKISDVILRLDCGIQKTANNANNFDWIP 535 Query: 497 ----------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 +S V+ RFNS+ + IIHG+M + K++VM FK+G K+L+ Sbjct: 536 WRGHGMTIEADSLLMDVMNRFNSVENIYKGCTGIIHGKMKNEQKDAVMKQFKDGEIKILV 595 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LSKNSY 605 ATTVIEVGIDV +A++IIIENAE FGLAQLHQLRGRVGRG S CILLY+P L K Sbjct: 596 ATTVIEVGIDVPEATLIIIENAERFGLAQLHQLRGRVGRGSLQSYCILLYNPKRLGKVGR 655 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 R ++K T DGF IAE+DLK R GEILG+KQSG F A LL A K A+ Sbjct: 656 GRFEIMKQTNDGFYIAEQDLKLRGSGEILGVKQSGEMDFFFADLARDYDLLLKANKFAE 714 >gi|331659988|ref|ZP_08360926.1| ATP-dependent DNA helicase RecG [Escherichia coli TA206] gi|331053203|gb|EGI25236.1| ATP-dependent DNA helicase RecG [Escherichia coli TA206] Length = 693 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|126658566|ref|ZP_01729713.1| DNA recombinase [Cyanothece sp. CCY0110] gi|126620153|gb|EAZ90875.1| DNA recombinase [Cyanothece sp. CCY0110] Length = 819 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 238/654 (36%), Positives = 391/654 (59%), Gaps = 25/654 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99 DLLFY+P ID + I+ + VTI G + + + F K + ++++L D TG Sbjct: 150 DLLFYYPRDHIDYARQVTINNLVAGETVTIVGTVKRCNCFTSPKNKKLSIFELILRDHTG 209 Query: 100 EITLLFFYRKT--------EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS--- 148 +I L F+ T E K ++ G + +G +K+ + I + +P +S Sbjct: 210 QIKLNRFFAGTRFTSRGWQERQKRIYPLGSTVAASGLVKQNRYGITLDNPEIEVLDSVGS 269 Query: 149 --QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206 + + + VY L G+ DL +K I+ +L + L + + + L ++ + EA Sbjct: 270 SIESIKIGRVLPVYPLTEGVGADLIRKAIIVSLEAIKQLRDPLPRVLREQYGLMGLKEAI 329 Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI--GIPINVEGKIAQK 264 + IH P + E + AR RL +DE Q+ L R+Q +K+I +G++ ++ Sbjct: 330 SNIHFPETS---ELLAHARRRLVFDEFFYLQLGFL-QRRQEQKQIHNSTVFTPKGRLIEQ 385 Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324 +PFS T +Q+ I +IL+D++ M R++QGDVG+GKT+VA+ A+ AA+++G QA Sbjct: 386 FDNILPFSLTNAQQRVINEILEDLNSVTPMNRLVQGDVGAGKTIVAVFAVLAALQSGYQA 445 Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384 +MAP +LA+QHY + + + VE++TG+ +A R + ++ G+ +++GTHA Sbjct: 446 ALMAPTEVLAEQHYRKLIPWFNQLYLPVELLTGSTKKAKREEIHRQLITGELPLLVGTHA 505 Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444 L QD++ + KL LV++DEQHRFGVQQR KL K +PHVL MTATPIPRTL LT GD+D Sbjct: 506 LIQDTVNFQKLGLVVIDEQHRFGVQQRAKLLAKGKSPHVLTMTATPIPRTLALTLHGDLD 565 Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504 +S+I E P GR+ I+T ++ + + ++ +++G++ Y I P IEE ++ + ++ V Sbjct: 566 VSQIDELPPGRQAIQTTVLTGKERTQAYDLIRREVAQGRQVYIIFPMIEESEKLDVKAAV 625 Query: 505 ERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 E L + +I ++HGRMS ++K+ V+ +F++ ++++TTVIEVG+DV +A++ Sbjct: 626 EEHKKLSDKVFPDFNIGLLHGRMSSVEKDGVLTAFRDNKYHIIVSTTVIEVGVDVPNATV 685 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622 ++IENAE FGL+QLHQLRGRVGRG S C+L+ + ++ RLSVL+ ++DGF I+E Sbjct: 686 MLIENAERFGLSQLHQLRGRVGRGSHKSYCLLMSSSK-TPDARQRLSVLEQSQDGFFISE 744 Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676 DL+ R G +LG +QSG+P F +A +LE+AR A+ I+ D +L S+ Sbjct: 745 MDLRFRGPGTVLGTRQSGLPDFALASLIEDQEVLELARVAAEKIIAADKNLGSL 798 >gi|309784367|ref|ZP_07679006.1| ATP-dependent DNA helicase RecG [Shigella dysenteriae 1617] gi|308927874|gb|EFP73342.1| ATP-dependent DNA helicase RecG [Shigella dysenteriae 1617] Length = 693 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 380/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIECDMALNVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|206577391|ref|YP_002235980.1| ATP-dependent DNA helicase RecG [Klebsiella pneumoniae 342] gi|206566449|gb|ACI08225.1| ATP-dependent DNA helicase RecG [Klebsiella pneumoniae 342] Length = 693 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 254/676 (37%), Positives = 380/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI DLL + P + DR + I+E+ T Sbjct: 10 PLSSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIAELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + +S+ RR ++DGTG +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NSNITFGGRRMMTCQISDGTGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DMSTPELQETLTPVYPTTEGIKQATLRKLTDQALELLETCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALL 241 E + +L Q S+ EA +H P + PA++RL +ELLA +++L Sbjct: 180 SELLPPELAQ--GMMSLPEALRTLHRPPPSLQLSELESGKHPAQQRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ +P+ + ++L ++PF PT +Q +I DM+ M+R++QGD Sbjct: 238 ALRAGAQRYHALPLGANDTLKNQLLASLPFKPTGAQARVTAEIEHDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + I V + G Sbjct: 298 VGSGKTLVAALAAVRAIAHGKQVALMAPTELLAEQHANNFRSWFEPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R+ E IA G+ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARQAQQEAIASGEVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDTRRSDIIDRVRN 477 Query: 478 VLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 + EG++AYW+C IEE ++ + L +I ++HGRM +K++VM Sbjct: 478 ACTHEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +FK G LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 AFKQGEMHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPDVQRIARHIHERYP 673 >gi|323189441|gb|EFZ74722.1| ATP-dependent DNA helicase RecG [Escherichia coli RN587/1] Length = 693 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 258/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGSRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPV--L 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSTNDALKNKLLAALPFKPTGAQVRVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A AV G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAVAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMT 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|7839553|gb|AAF70323.1|AF260247_1 RecG [Vibrio cholerae] Length = 692 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 260/675 (38%), Positives = 388/675 (57%), Gaps = 26/675 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL GVG K + L K+ DLLF+ P + DR I ++ Sbjct: 9 PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + KR+ + ++DG G +TL FF T +KN F EG+ + G+IK+ Sbjct: 63 VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFF-NFTAAMKNNFAEGKFVHAYGEIKR 120 Query: 132 LKNRIIMVHPHYIFHN---SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186 + ++HP Y F + DV P + VY GL + + +AL L + Sbjct: 121 GNQGLEIIHPDYKFFTPAQTPDVE-PNLTPVYPTTEGLRQLTLRNLTDQALVLLEKSAVQ 179 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242 E + L ++ ++A+A IIH P D + PA+ RL +ELLA +++L Sbjct: 180 ELLPSGLYDQQM--TLAQALKIIHRPSADIDLRLFEQGRHPAQIRLIMEELLAQNLSMLA 237 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R Q ++++ +P+ ++ Q++L +PFSPTK+Q+ + +I D+++ + M+R++QGDV Sbjct: 238 IRSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLAKPHPMMRLVQGDV 297 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+E G Q +MAP +LA+QH ++ + I V + G + Sbjct: 298 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGK 357 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R L RIA G+ +++GTHALFQ+ + + L LVI+DEQHRFGV QRL+L +K Sbjct: 358 ARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQG 417 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D++ S I E P G PI+TV IP + DE++ER++ Sbjct: 418 AYPHQLIMTATPIPRTLGMTAYADLETSVIDELPPGGTPIQTVAIPDTKRDEIVERIRHA 477 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 +EGK+AYW+C I+E + ++ E L I ++HGRM +K++VM + Sbjct: 478 CFNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQA 537 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK L +ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL+ Sbjct: 538 FKTIELHLFVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF 597 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 H PLSK + RL VL+ + DGF+IA+ DL+ R GE+LG KQ+G+ F IA L+ Sbjct: 598 HAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLV 657 Query: 657 EIARKDAKHILTQDP 671 ++ A+HI + P Sbjct: 658 PQVQRIARHIHERYP 672 >gi|152978695|ref|YP_001344324.1| ATP-dependent DNA helicase RecG [Actinobacillus succinogenes 130Z] gi|150840418|gb|ABR74389.1| ATP-dependent DNA helicase RecG [Actinobacillus succinogenes 130Z] Length = 693 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/677 (37%), Positives = 385/677 (56%), Gaps = 24/677 (3%) Query: 12 PLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70 PL+T GVG + LS+I IN DLLF+ P + DR + I++I ++ Sbjct: 10 PLTTLSGVGTAIAAKLSRIGIN-------NLQDLLFHLPIRYEDRTHITPIADIRPDQYA 62 Query: 71 TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 TI G I Q Q +R + L+DG+ +I L FF M +N F G ++ G+IK Sbjct: 63 TIEG-IVQTCDVQFGRRPILTVSLSDGSSKIMLRFFNFNAGM-RNSFQIGARVKAFGEIK 120 Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPE 187 + + + HP Y I ++Q + + +Y+ GL +K+ +AL+ L V Sbjct: 121 RGRFMAEIHHPEYQIIRDNQPIQLEETLTPIYAATEGLKQASLRKLTEQALALLNKVQLT 180 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLM 243 I D F S+ +A + +H P E PA+ RL ++ELLA +A+ + Sbjct: 181 EILPDAFNPYPF-SLKDALHFLHRPPPDVSLEMLEKGQHPAQVRLIFEELLAHNLAMQKV 239 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 R ++ +P+ + + Q+ L +PF PT +Q DI +D++Q M+R++QGDVG Sbjct: 240 RVGTQQHYAVPLVHQTDLKQRFLAQLPFRPTNAQLRVTADIERDLAQSYPMMRLVQGDVG 299 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKTLVA +A A ++ G Q +MAP ILA+QH E +++ + I V + G + Sbjct: 300 SGKTLVAALAAIAVIDNGKQVALMAPTEILAEQHAENFRRWLEPFNIRVGWLAGKVKGKA 359 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420 R+ L I G+ +++GTHALFQ+ +++ L LVI+DEQHRFGV QRL L +K Sbjct: 360 RQAVLTEIQRGEVQMVVGTHALFQEEVKFADLALVIIDEQHRFGVHQRLMLREKGENSGI 419 Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL-KVV 478 PH L+MTATPIPRTL +T D+D S I E P GR PI TV++ R E++ R+ Sbjct: 420 YPHQLIMTATPIPRTLAMTVYADLDTSVIDELPPGRTPITTVVVSEERRAEIVARVHNAC 479 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 +E ++AYW+C IEE + ++ L + I ++HGRM +K+ +M F Sbjct: 480 TNEKRQAYWVCTLIEESEVLEAQAAEATAEDLQKALPHLRIGLVHGRMKPAEKQEIMARF 539 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 K LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S C+L+Y Sbjct: 540 KAAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYK 599 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PPL K S RL VL++++DGF+I+E+DL+ R GE+LG KQ+G+ +F +A ++ Sbjct: 600 PPLGKISQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAEFKVANLMRDRRMIP 659 Query: 658 IARKDAKHILTQDPDLT 674 + AK ++ + PD+ Sbjct: 660 TVQHYAKQLIVKHPDIA 676 >gi|218691935|ref|YP_002400147.1| ATP-dependent DNA helicase RecG [Escherichia coli ED1a] gi|218429499|emb|CAR10322.1| ATP-dependent DNA helicase [Escherichia coli ED1a] Length = 693 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 258/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A AV G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAVAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRIDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMT 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVANLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|332995097|gb|AEF05152.1| ATP-dependent DNA helicase RecG [Alteromonas sp. SN2] Length = 690 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 255/656 (38%), Positives = 376/656 (57%), Gaps = 37/656 (5%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +GVG K + L+KI D+LF+ P + DR ++E V+ Sbjct: 8 PITALKGVGAKVAEKLAKI------GLFTLQDVLFHLPLRYEDRTRVYSVAECRPFTHVS 61 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + Q K+R + L+DGTG ITL FF+ + + + G I G+++ Sbjct: 62 VQGEV-KSADIQYGKKRMLVVKLSDGTGTITLRFFHFGA-VQRTMMTPGNLIRCFGEVRT 119 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL----IEAVYSLPTGLSVDLFKKIIVEALSRLP---- 183 K I M+HP + D + PL + VY G+ + + +AL L Sbjct: 120 GKWGIEMMHPEFKL---IDEDAPLEAESLTPVYPTTEGVKQLTLRNLTDQALKMLDKGAL 176 Query: 184 --VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQ 237 +LPE + D + S+ EA + +H P D E PA+ RL +ELL+ Sbjct: 177 ADLLPEGMYSDQI------SLNEALHAVHRPAPDTDVHEMEEGLHPAQYRLILEELLSHH 230 Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 +++L +RK + GI I V+ + +K+L +PFSPT +Q+ + DI QDM M+R+ Sbjct: 231 LSVLKVRKLSDAQPGISIKVDKPLIEKMLAQLPFSPTGAQQRVVADIQQDMQHPRPMMRL 290 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 +QGDVGSGKTLVA +A +A+ AG Q +MAP +LA+QH +++ I + + G Sbjct: 291 VQGDVGSGKTLVAALAALSAIGAGHQVALMAPTELLAEQHANNFREWFAPLGIEIGWLAG 350 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL--- 414 + R + L R+ G +++GTHA+FQ+S+ Y +L LVIVDEQHRFGV QRL L Sbjct: 351 KLKGKARTEVLARLESGDVQMLVGTHAIFQESVNYQQLALVIVDEQHRFGVHQRLALRDK 410 Query: 415 -TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 Q+ PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV++P +R +VIE Sbjct: 411 GEQQGRYPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVVLPDSRRGDVIE 470 Query: 474 RLKVVLSE-GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKE 531 R++ E G++AYW+C I+E + ++ + L ++ ++HGR+ +K Sbjct: 471 RVRTACKENGRQAYWVCTLIDESEVLECQAAEDAAVILRTALPELNVGLVHGRLKPAEKL 530 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 VM FK G LL+ATTVIEVG+DV +ASI+IIEN E GLAQLHQLRGRVGRG S Sbjct: 531 QVMADFKAGELDLLVATTVIEVGVDVPNASIMIIENPERLGLAQLHQLRGRVGRGAVESQ 590 Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 C+L+Y PLSK + RL+VL+ + DGF IA+ DL+ R GE +G +Q+GM + IA Sbjct: 591 CVLMYQSPLSKTATQRLTVLRESNDGFYIAQRDLEIRGPGEFMGTRQTGMAELKIA 646 >gi|16762566|ref|NP_458183.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144055|ref|NP_807397.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213425216|ref|ZP_03357966.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213855784|ref|ZP_03384024.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|25290832|pir||AE0969 ATP-dependent DNA helicase (EC 3.6.1.-) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504871|emb|CAD03249.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica serovar Typhi] gi|29139691|gb|AAO71257.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 693 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 256/676 (37%), Positives = 381/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI DLL + P + DR + I E+ T Sbjct: 10 PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPV--L 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q S+ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L ++PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRYHTQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + + V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R+ E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R E+I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +EG++AYW+C IEE ++ + L +I ++HGRM +K++VM Sbjct: 478 ACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRIARHIHERYP 673 >gi|168464946|ref|ZP_02698838.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195632480|gb|EDX50964.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 693 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 256/676 (37%), Positives = 380/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI DLL + P + DR + I E+ T Sbjct: 10 PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q S+ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L ++PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRSWFAPLGVEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R+ E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R E+I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +EG++AYW+C IEE ++ + L +I ++HGRM +K++VM Sbjct: 478 ACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRIARHIHERYP 673 >gi|215488947|ref|YP_002331378.1| ATP-dependent DNA helicase RecG [Escherichia coli O127:H6 str. E2348/69] gi|312967979|ref|ZP_07782190.1| ATP-dependent DNA helicase RecG [Escherichia coli 2362-75] gi|215267019|emb|CAS11464.1| ATP-dependent DNA helicase [Escherichia coli O127:H6 str. E2348/69] gi|312287238|gb|EFR15147.1| ATP-dependent DNA helicase RecG [Escherichia coli 2362-75] Length = 693 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 258/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGSRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A AV G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAVAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRIDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMT 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|261823689|ref|YP_003261795.1| ATP-dependent DNA helicase RecG [Pectobacterium wasabiae WPP163] gi|261607702|gb|ACX90188.1| ATP-dependent DNA helicase RecG [Pectobacterium wasabiae WPP163] Length = 693 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 256/692 (36%), Positives = 392/692 (56%), Gaps = 38/692 (5%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 M+ LN PLST GVG + L+++ ET DLL + P + DR + Sbjct: 1 MKGRLLN--TQPLSTLAGVGASQAAKLARL-----GLET-VQDLLLHLPLRYEDRTHLYP 52 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 I ++ T+ G I + + RR ++DG+G +T+ FF M KN G Sbjct: 53 IGDLLPGMYATVEGEILR-NDITFGSRRMLTCQISDGSGMLTMRFFNFSAAM-KNSLAPG 110 Query: 121 RKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEA 178 +++T G+IK+ K ++HP Y + +S V + VY G+ +K+ +A Sbjct: 111 QRVTAYGEIKRGKIGAEIIHPEYRVQGDSTQVELQESLTPVYPSTEGIRQATLRKLTDQA 170 Query: 179 LSRLP------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS------PARE 226 L L +LPE + + L+ S+ +A +H P D + T PA++ Sbjct: 171 LDLLAANHIDELLPESLSRSLI------SLPDALRTLHRP--PPDMQLTELEHGKHPAQQ 222 Query: 227 RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQ 286 RL +ELLA +++L +R ++ P+ + + Q++L +PF+PT++Q+ + +I Sbjct: 223 RLIMEELLAHNLSMLAVRAGEQRHKASPLPTKDSLKQQLLAALPFTPTQAQDRVVAEIET 282 Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346 DM++ M+R++QGDVGSGKTLVA +A A+ +G Q +MAP +LA+QH +++ + Sbjct: 283 DMAKDFPMMRLVQGDVGSGKTLVAALAALRAIASGKQVALMAPTELLAEQHAHNFRQWFE 342 Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 + V + G R+ + IA+GQ +++GTHA+FQ +++ L LVI+DEQHRF Sbjct: 343 PLGLEVGWLAGKQKGKARQAQQDAIANGQVSMVVGTHAIFQQQVKFNGLALVIIDEQHRF 402 Query: 407 GVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462 GV QRL L +K PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV Sbjct: 403 GVHQRLALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVA 462 Query: 463 IPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAI 520 IP +R ++IER+ EG++AYW+C IEE ++ L + + + Sbjct: 463 IPDSRRSDIIERVNSACQQEGRQAYWVCTLIEESDLLEAQAAEATSEELKAALPNLKVGL 522 Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580 +HGRM +K++VM +FK G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLR Sbjct: 523 VHGRMKAQEKQAVMQAFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLR 582 Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 GRVGRG S C+LLY P+SK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G Sbjct: 583 GRVGRGAVASHCVLLYKTPMSKTAQKRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTG 642 Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 +F +A L+ + A+H+ PD Sbjct: 643 NAEFKVADLLRDRDLIPQVHRVARHLHEHYPD 674 >gi|323182443|gb|EFZ67847.1| ATP-dependent DNA helicase RecG [Escherichia coli 1357] Length = 693 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 380/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVMQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIEHDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIKVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|254482756|ref|ZP_05095994.1| ATP-dependent DNA helicase RecG [marine gamma proteobacterium HTCC2148] gi|214037115|gb|EEB77784.1| ATP-dependent DNA helicase RecG [marine gamma proteobacterium HTCC2148] Length = 688 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 254/676 (37%), Positives = 385/676 (56%), Gaps = 25/676 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ RGVG K + L+ + R DLLF+ P + DR I + V Sbjct: 8 PVTQLRGVGPKLATKLADV------GIHRVEDLLFHLPLRYQDRTRVTPIGATQDGVDVV 61 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G + + + +RR + L DGTG I+L FF+ KN G ++ G++++ Sbjct: 62 IEGEV-RVADIAFGRRRSLVVRLQDGTGTISLRFFHFSAAQ-KNNLKPGTRLRCFGQVRR 119 Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + + M HP Y + + L VY G+ + ++K+ +A++RL Sbjct: 120 GGSGLEMYHPEYRQVIEGEVETEDALT-PVYPALGGIGQNQWRKLCAQAVTRLK---HST 175 Query: 190 EKDLL-QKKSFP-SIAEAFNIIHNPR----KAKDFEWTSPARERLAYDELLAGQIALLLM 243 ++LL + P + EA +H P + E PA+ RLA +EL+A + L + Sbjct: 176 PQELLPTEHPLPYGLGEALVFLHTPPPDAPQESLREGNHPAQLRLAVEELVAHNLTLQGL 235 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 R Q + ++ ++ ++ L ++PFSPT +Q+ +++I +D+++ + MLR++QGDVG Sbjct: 236 RAQQQAAGSPQLHGNAQLLEQFLGSLPFSPTAAQQRVMQEITEDIAKPHPMLRLVQGDVG 295 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKTLVA A A+ +G Q IMAP ILA+QH + I + ++G + Sbjct: 296 SGKTLVAAAAALQAIASGYQVAIMAPTEILAEQHRLNFMSWFSQLDINIAWLSGRIKGKK 355 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420 R +ALE I+ G A ++IGTHALFQ + + +L LVIVDEQHRFGV QRL LT+K+ Sbjct: 356 RVEALETISSGSAALVIGTHALFQADVMFERLGLVIVDEQHRFGVHQRLSLTEKSGPDVG 415 Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 PH L+MTATPIPRTL + + D+D S I E P GR+P++T +I +R +++++R+ Sbjct: 416 RPHQLVMTATPIPRTLSMVAYADLDCSVIDELPPGRQPVETALIDNSRREQIVQRVANAC 475 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538 + G++ YW+C +EE ++ L E ++ ++HGR+ +K+ VM +FK Sbjct: 476 AGGRQTYWVCTLVEESDVLQAQAAEATAAELAEALPDLAVGLVHGRLKPTEKDLVMAAFK 535 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLY Sbjct: 536 AGKIDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTAASHCVLLYQS 595 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PLS N RL ++ + DGF IAE+DL+ R GE+LG +Q+G+ +F IAQ H+ LLE Sbjct: 596 PLSLNGKQRLQAMRASTDGFYIAEKDLELRGPGEVLGTRQTGLMEFRIAQLPTHNHLLEE 655 Query: 659 ARKDAKHILTQDPDLT 674 + A +I PDL Sbjct: 656 VQDIAANIQANHPDLA 671 >gi|306816000|ref|ZP_07450138.1| ATP-dependent DNA helicase RecG [Escherichia coli NC101] gi|222035360|emb|CAP78105.1| ATP-dependent DNA helicase recG [Escherichia coli LF82] gi|305850396|gb|EFM50853.1| ATP-dependent DNA helicase RecG [Escherichia coli NC101] gi|312948213|gb|ADR29040.1| ATP-dependent DNA helicase RecG [Escherichia coli O83:H1 str. NRG 857C] gi|320193841|gb|EFW68474.1| ATP-dependent DNA helicase RecG [Escherichia coli WV_060327] gi|324008108|gb|EGB77327.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 57-2] Length = 693 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 258/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A AV G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAVAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRIDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMT 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|167622325|ref|YP_001672619.1| ATP-dependent DNA helicase RecG [Shewanella halifaxensis HAW-EB4] gi|167352347|gb|ABZ74960.1| ATP-dependent DNA helicase RecG [Shewanella halifaxensis HAW-EB4] Length = 696 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 255/685 (37%), Positives = 388/685 (56%), Gaps = 34/685 (4%) Query: 10 FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69 P++ +GV K + L+K+ + T DLLF+ P + DR I+ + Sbjct: 11 LVPITDLKGVANKMAERLAKL------SITTVQDLLFHLPLRYEDRTQVYPIASLYPGSY 64 Query: 70 VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 TI I Q S ++R + D TG +TL FF +N G I G+I Sbjct: 65 GTIEAVI-QSSQIIQGRKRMLTCTVRDDTGSLTLRFFNFSVAQ-RNGLEIGMTIRAYGEI 122 Query: 130 KKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLP---- 183 ++ K+ ++HP Y + +D+ + VY GL + K+ +AL+ L Sbjct: 123 RRGKHFAEIIHPEYKLISPGEDLQLSDTLTPVYPTTEGLKQASWIKLTEQALAMLDNGGL 182 Query: 184 --VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQ 237 +LP ++ + L K +A I+H P + T PA++RL +ELLA Sbjct: 183 QELLPPNLQPNNLDLK------QALQILHRPNNQVSLFELEQGTHPAQQRLIQEELLAHN 236 Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 +++L +R++ ++ + ++ G++ L ++PF PT +Q+ + DI QD+++ M+R+ Sbjct: 237 LSMLRLRQRSNRDKAVSMHATGQLLNPFLASLPFKPTGAQQRVVADITQDLAKHEPMMRL 296 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 +QGDVGSGKTL+A +A A+E+G Q +MAP +LA+QH + + + V + G Sbjct: 297 VQGDVGSGKTLIAALAALQAIESGYQVAMMAPTELLAEQHALNFSSWFEPLGLKVGWLAG 356 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 + R ++L I G AHI+IGTHA+FQ+ + + KL L+I+DEQHRFGV QRL L +K Sbjct: 357 KLKGKARAQSLADIESGDAHIVIGTHAIFQEQVVFNKLALIIIDEQHRFGVHQRLGLREK 416 Query: 418 ATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 + PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV I R DEVI+ Sbjct: 417 GISQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAISEQRRDEVID 476 Query: 474 RLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKE 531 R++ +++ ++ YW+C IEE + ++ + L + ++HGRM +K+ Sbjct: 477 RVRQAAINDKRQTYWVCTLIEESEVLECQAAEDTAEELKRVLPELKVGLVHGRMKPAEKQ 536 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 +M FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S Sbjct: 537 QIMADFKAGELNLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASH 596 Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 C+LLY PPLS + RL VL+ + DGF+IA++DL+ R GE+LG KQ+G+ IA Sbjct: 597 CVLLYKPPLSATATKRLGVLRQSNDGFVIAQQDLEIRGPGEVLGTKQTGIADMKIADLMR 656 Query: 652 HDSLLEIARKDAKHILTQDPDLTSV 676 ++L+ +K A H++ Q P TSV Sbjct: 657 DEALIPHVQKLAAHVMQQAP--TSV 679 >gi|88811932|ref|ZP_01127185.1| ATP-dependent DNA helicase RecG [Nitrococcus mobilis Nb-231] gi|88790816|gb|EAR21930.1| ATP-dependent DNA helicase RecG [Nitrococcus mobilis Nb-231] Length = 697 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 235/596 (39%), Positives = 351/596 (58%), Gaps = 20/596 (3%) Query: 94 LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVN 152 ++DGTG +TL FF+ K G ++ G+++ + M HP + +F + ++ Sbjct: 86 ISDGTGRLTLQFFHFYPNQRKR-LQAGVRLLCYGEVRSGPLGLQMTHPQWRVFAPGRPIS 144 Query: 153 FPL-IEAVYSLPTGLSVDLFKKIIVEAL-----SRLPVLPEWIEKDLLQKKSFPSIAEAF 206 + VY GL +++ AL R V E + + L ++ P + EA Sbjct: 145 GEKELTPVYPSTEGLDQASLRRLTRRALEEAMAGRAGV--ELLPRRLREELGLPKLIEAL 202 Query: 207 NIIHNP---RKAKDF-EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKI 261 ++H P A D PA RL +ELLA +++LL +R + P + G + Sbjct: 203 RLLHAPPSTASATDLIARRHPAVRRLILEELLAHRLSLLRLRDHRQLAKSAPKLQGTGAL 262 Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321 + L +PF T +Q ++++ +DM Q MLR++QGDVG GKT++A +A VEAG Sbjct: 263 LEAWLARLPFRLTSAQRRVMREVAKDMGQARPMLRLVQGDVGCGKTVIAALAALTTVEAG 322 Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q MAP +LA+QHY +++ + +TG + + RR+ ++R+A+G+ +++G Sbjct: 323 WQVAFMAPTELLAEQHYRTFQRWLAPLGVETAWLTGRLAASSRREHIKRLANGEIRVVMG 382 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVL 437 THALFQD + +++L L IVDEQHRFGV QRL L K+ PH L+MTATPIPRTL + Sbjct: 383 THALFQDQVVFHRLGLAIVDEQHRFGVHQRLALKNKSGVEEIQPHQLIMTATPIPRTLAM 442 Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497 T+ D+D+S I E P GRKPI TV I R +VIER++ +EG++AYW+C ++EE + Sbjct: 443 TAYADLDVSVIDELPPGRKPIITVAISDARRGQVIERIRHACAEGRQAYWVCTRVEESEA 502 Query: 498 SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556 + L E + ++HGRM ++KE+VM F+ G +LL+ATTVIEVG+D Sbjct: 503 CQAEAAEATAQRLRESLPELRVGLVHGRMKGVEKEAVMAGFEAGELQLLVATTVIEVGVD 562 Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616 V +AS++IIENAE FGLAQLHQLRGR+GRG SSC+L+YH PLS+ + RL++L+ T+D Sbjct: 563 VPNASLMIIENAERFGLAQLHQLRGRIGRGATASSCVLMYHGPLSQTAQARLAILRYTQD 622 Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 GF IA+ DL+ R GE+LG +Q+G + IA LL R+ A +L PD Sbjct: 623 GFRIAQRDLELRGPGELLGTRQTGELHYRIADLRRDTDLLPDVRRWAAILLRGCPD 678 >gi|331644371|ref|ZP_08345500.1| ATP-dependent DNA helicase RecG [Escherichia coli H736] gi|331655285|ref|ZP_08356284.1| ATP-dependent DNA helicase RecG [Escherichia coli M718] gi|331036665|gb|EGI08891.1| ATP-dependent DNA helicase RecG [Escherichia coli H736] gi|331047300|gb|EGI19378.1| ATP-dependent DNA helicase RecG [Escherichia coli M718] Length = 704 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 380/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 21 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 74 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 75 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 132 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 133 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 190 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 191 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 248 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I DM+ M+R++QGD Sbjct: 249 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIEHDMALDVPMMRLVQGD 308 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 309 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIKVGWLAGKQKG 368 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 369 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 428 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 429 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 488 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 489 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 548 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 549 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 608 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 609 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 668 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 669 IPEVQRLARHIHERYP 684 >gi|145633450|ref|ZP_01789180.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae 3655] gi|144986013|gb|EDJ92615.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae 3655] Length = 693 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 258/678 (38%), Positives = 393/678 (57%), Gaps = 26/678 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI G N DLLF+ P + DR I+ + E+ VT Sbjct: 10 PLTSLSGVGAAISNKLAKI---GIHN---LQDLLFHLPIRYEDRTRITPIANLRPEQYVT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G I Q + + L+DGT +I L FF M +N F G ++ G++K+ Sbjct: 64 IEG-IVQTCEIAFGRSPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVGVRVKAFGEVKR 121 Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 ++ + HP Y + N+ V + +YS GL + +K+ +AL+ +L + Sbjct: 122 GRHMPEIHHPEYQIVLDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQALA---LLDKVQ 178 Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242 ++L + P S+ EA ++H P E PA++RL ++ELLA +A+ Sbjct: 179 IAEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQK 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R ++ +P++ + + Q+ L +PF PT +Q+ + DI QD+ + M+R++QGDV Sbjct: 239 VRLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVLDIEQDLIKDYPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A++ G Q +MAP ILA+QH +++ + I V + G + Sbjct: 299 GSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R+ LE+I G +++GTHALFQ+ +++ L LVI+DEQHRFGV QRL L +K Sbjct: 359 SRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVNQRLMLREKGEKAG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T D+D S I E P GR PI TV++ R E++ R+K Sbjct: 419 FYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRTEIVMRVKNA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 ++E ++AYW+C I+E + ++ + L + +I ++HGRM +K+ VM Sbjct: 479 CVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMR 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FKN LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S C+L+Y Sbjct: 539 FKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PPL K S RL VL++++DGF+I+E+DL+ R GE+LG KQ+G+ + +A ++ Sbjct: 599 KPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRVANLMRDRKMI 658 Query: 657 EIARKDAKHILTQDPDLT 674 + AK ++ + PDL Sbjct: 659 PTVQFYAKSLIQKYPDLA 676 >gi|200386980|ref|ZP_03213592.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604078|gb|EDZ02623.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 693 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 255/676 (37%), Positives = 381/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI DLL + P + DR + I E+ T Sbjct: 10 PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L S+ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 AELLPPEL--AHGMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L ++PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + + V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R+ E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R E+I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +EG++AYW+C IEE ++ + L +I ++HGRM +K++VM Sbjct: 478 ACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +FK G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 AFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRIARHIHERYP 673 >gi|11992017|gb|AAG42404.1|AF300471_7 ATP-dependent DNA helicase RecG [Zymomonas mobilis subsp. mobilis ZM4] Length = 676 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 249/654 (38%), Positives = 381/654 (58%), Gaps = 22/654 (3%) Query: 36 ANETRFIDLLFYHPSSFIDRHYRPKIS--EISEERIVTITGYISQHSSFQLQKRRPYKIL 93 A+ TR DLLFY PS + R I+ ++ I+T+T +H S R P++IL Sbjct: 32 ASVTRLKDLLFYLPSGQMRRVKSDHINAKDVGATVILTLTAKEYRHPS----GRGPFRIL 87 Query: 94 LNDG-TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN 152 D G+I LL+F + + + G V+GK+ + ++ +VHP I S++ + Sbjct: 88 AEDPFGGQIQLLWFGNHSSWARKLMPIGETRLVSGKLDIYQEQLQIVHPSEIVPLSEENS 147 Query: 153 FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 PL E +Y L GL+ K++ +A + P LPEWIE LL+K +PS EA IH Sbjct: 148 IPLEETLYPLSDGLTHRRIGKLVRQAWEKSPDLPEWIEPSLLKKHQWPSWQEAVERIHQH 207 Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272 + A+ R+ YDE+ A Q+AL L+R +++ G P+ +G + + N+PF Sbjct: 208 PDDR------AAKLRIGYDEIFANQLALKLIRAANRRKRGFPLKGDGHLRDAL--NLPFQ 259 Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332 PT +Q ++ +I DM Q + MLR+LQGDVGSGKT VAL ++ A EAG Q ++AP I Sbjct: 260 PTGAQRRSLAEIEGDMQQASPMLRLLQGDVGSGKTWVALHSLLIAAEAGYQGALLAPTEI 319 Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392 LA+QH+E + + + + ++TG R L +A G H+++ F+ + Sbjct: 320 LARQHFETLSQQLAGLPVNIALLTGRDKGKLRESTLMGLADGSIHLLVVPMPFFRKRLTT 379 Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEK 451 + +++ G + L +KA PH+L+MTATPIPR+L+LT+ G++D+S++ E Sbjct: 380 KIWVSLLLMNSIASGSPNGMMLAEKAIHTPHLLVMTATPIPRSLMLTAHGEMDVSRLDEM 439 Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-ESNFR-----SVVE 505 P GR+P++T +I +I E+I L ++EG ++YW+CP + E E +F + + Sbjct: 440 PPGRQPVETRVISSRKIPEIIASLGRHIAEGGQSYWVCPAVGEADIEEDFSPNAIAAAEQ 499 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 RF+ L +HF + ++HG+M +K+ VMD F G +L+ATTVIEVG++V +A+++II Sbjct: 500 RFSLLQQHFGKKVGLVHGKMKPAEKDKVMDDFAAGKIAVLVATTVIEVGVNVPNATLMII 559 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625 + AE FGLAQLHQLRGRVGRG S C+LL L+ + RL++++ DGF +AEEDL Sbjct: 560 DQAERFGLAQLHQLRGRVGRGGGRSICLLLRSEELTSVARERLALIRECNDGFRLAEEDL 619 Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679 + R GEILG KQSG F IA PE LL IA DA+ ++ +D L+ RGQ Sbjct: 620 RLRGSGEILGTKQSGESHFQIASPEDLSELLPIANDDARLLVDRDGGLSGERGQ 673 >gi|197251387|ref|YP_002148675.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197215090|gb|ACH52487.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 693 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 254/676 (37%), Positives = 382/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI DLL + P + DR + I E+ T Sbjct: 10 PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPV--L 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q S+ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L ++PF+PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRYHAQPLSTNNILKDKLLASLPFTPTSAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + + V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R+ E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRT+ +T+ D+D S I E P GR P+ TV IP R E+I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTMAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +EG++AYW+C IEE ++ + L +I ++HGRM +K++VM Sbjct: 478 ACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +FK G LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRIARHIHERYP 673 >gi|161616826|ref|YP_001590791.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194445167|ref|YP_002042993.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|161366190|gb|ABX69958.1| hypothetical protein SPAB_04645 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403830|gb|ACF64052.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 693 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 256/676 (37%), Positives = 380/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI DLL + P + DR + I E+ T Sbjct: 10 PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q S+ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L ++PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRSWFAPLGVEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R+ E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R E+I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +EG++AYW+C IEE ++ + L +I ++HGRM +K++VM Sbjct: 478 ACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAI 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRIARHIHERYP 673 >gi|78043676|ref|YP_360300.1| ATP-dependent DNA helicase RecG [Carboxydothermus hydrogenoformans Z-2901] gi|77995791|gb|ABB14690.1| ATP-dependent DNA helicase RecG [Carboxydothermus hydrogenoformans Z-2901] Length = 677 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 243/660 (36%), Positives = 390/660 (59%), Gaps = 15/660 (2%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P+ +GVG + + L K+ ET DL++Y P + DR KISE+ + + T Sbjct: 4 PVQYLKGVGPQKAKLLQKL-----KIET-VKDLIYYFPKRYEDRSSLKKISELINDEVTT 57 Query: 72 ITGYISQ-HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 + G + + K + K+ +NDG+G FF LKNVF +G+K+ GK++ Sbjct: 58 VLGTVVEVKEVIPRDKLKILKVGINDGSGTAYGCFF--NQSYLKNVFIKGKKVYFYGKVE 115 Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWI 189 K + Y F + + ++ + +Y L LS F+++I AL + L + E + Sbjct: 116 KRFFETNIYVYEYEFWDKELLHTNRLVPIYPLTENLSPKTFRQLIKNALDKYLEEITEPL 175 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249 +++L+K S P + +A +H P + E + AR R+ ++E L +A+ L ++ ++K Sbjct: 176 PEEILRKYSLPDLKQALMNLHFPESS---EQSELARRRMVFEEFLLFFLAIGLYKENYQK 232 Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309 + GI I G++ +K + ++PF T +QE ++I +D++ K M R++QGDVGSGKT++ Sbjct: 233 KPGIVIAGSGELEKKFIDSLPFKLTSAQEKVWREIKEDLAAKKPMNRLVQGDVGSGKTIL 292 Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369 A +A+ AVEAG Q +MAP ILA+QHY + + I V +++G++ + + Sbjct: 293 AALALVKAVEAGFQGALMAPTEILAEQHYLNLSRLFAPLGIKVVLLSGSLSSGKKEAVYK 352 Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429 I +G A +IIGTHAL Q+++ + L L ++DEQHRFGV+QR L +K + L+M+AT Sbjct: 353 AIKNGYADVIIGTHALIQEAVIFDNLGLAVIDEQHRFGVEQRSSLVEKGLYVNQLVMSAT 412 Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489 PIPRTL LT GD+D+S + PAGRKPIKT + + L ++EG++ Y +C Sbjct: 413 PIPRTLALTLYGDLDVSIVDALPAGRKPIKTYWLSSQDKGKAYAFLLKQVAEGRQGYVVC 472 Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548 P +EE ++ +V + + L + F ++HGR+ +KE VM++F+ ++L++T Sbjct: 473 PLVEESEKLQVEAVTKLYEKLSKKFPQFKWGLMHGRLKPAEKEEVMENFRKNNIQILVST 532 Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608 TVIEVG+DV +A++IIIE+A FGLAQLHQ+RGRVGRGE S C LL +P ++ R+ Sbjct: 533 TVIEVGVDVPNANVIIIEDAWRFGLAQLHQIRGRVGRGEHQSYCFLLGNPR-NQEGIVRM 591 Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668 +++ DGF IAEEDLK R GE+ G +QSG +F +A ++L +A+K+A ILT Sbjct: 592 KIMEKYNDGFKIAEEDLKLRGPGELSGTRQSGAWEFKLADIVRDQAILFLAKKEADEILT 651 >gi|145636800|ref|ZP_01792466.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae PittHH] gi|145270098|gb|EDK10035.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae PittHH] Length = 693 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 258/678 (38%), Positives = 393/678 (57%), Gaps = 26/678 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI G N DLLF+ P + DR I+ + E+ T Sbjct: 10 PLTSLSGVGAAISNKLAKI---GIHN---LQDLLFHLPIRYEDRTRITPIANLRPEQYFT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G I Q +R + L+DGT +I L FF M +N F G ++ G++K+ Sbjct: 64 IEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVGVRVKAFGEVKR 121 Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 ++ + HP Y + N+ V + +YS GL + +K+ +AL+ +L + Sbjct: 122 GRHMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQALA---LLDKVK 178 Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242 ++L + P S+ EA ++H P E PA++RL ++ELLA +A+ Sbjct: 179 IAEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQK 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R ++ +P++ + + Q+ L +PF PT +Q+ + DI QD+ + M+R++QGDV Sbjct: 239 VRLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLLKDYPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A++ G Q +MAP ILA+QH +++ + I V + G + Sbjct: 299 GSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R+ LE+I G +++GTHALFQ+ +++ L LVI+DEQHRFGV QRL L +K Sbjct: 359 SRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRLMLREKGEKAG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T D+D S I E P GR PI TV++ R E++ R+K Sbjct: 419 FYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRAEIVMRVKNA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 ++E ++AYW+C I+E + ++ + L + +I ++HGRM +K+ VM Sbjct: 479 CVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMR 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FKN LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S C+L+Y Sbjct: 539 FKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGRTASFCVLMY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PPL K S RL VL++++DGF+I+E+DL+ R GE+LG KQ+G+ + +A ++ Sbjct: 599 KPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRVANLMRDRKMI 658 Query: 657 EIARKDAKHILTQDPDLT 674 + AK ++ + PDL Sbjct: 659 PTVQFYAKSLIQKYPDLA 676 >gi|238910215|ref|ZP_04654052.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 693 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 255/676 (37%), Positives = 381/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI DLL + P + DR + I E+ T Sbjct: 10 PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPV--L 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q S+ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L ++PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + + V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R+ E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R E+I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +EG++AYW+C IEE ++ + L +I ++HGRM +K++VM Sbjct: 478 ACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +FK G LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRIARHIHERYP 673 >gi|16331409|ref|NP_442137.1| ATP-dependent DNA helicase RecG [Synechocystis sp. PCC 6803] gi|3914638|sp|Q55681|RECG_SYNY3 RecName: Full=ATP-dependent DNA helicase recG gi|1001580|dbj|BAA10207.1| DNA recombinase [Synechocystis sp. PCC 6803] Length = 831 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 239/655 (36%), Positives = 388/655 (59%), Gaps = 29/655 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99 DLLFY P ++D + I+E++ VTI G + + F K + IL L D TG Sbjct: 162 DLLFYFPRDYLDYAQQVTIAELTAGETVTIVGRVVNCTCFTSPKNQNLNILQIQLRDQTG 221 Query: 100 EITLLFFYRK--------TEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV 151 I L FY E +K ++ + +G +K K + + +P D Sbjct: 222 RIKLSRFYAGKRFAHRGWQEKIKKLYPPQAVVAASGLVKSSKFGLTLDNPEI---EVLDR 278 Query: 152 NFPLIEA--------VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203 + P I++ VY L G++ D +K+++ + + L + + +++ +K + Sbjct: 279 HSPSIDSFKVGRVLPVYPLTEGITADFLRKLVLACQTAIAKLSDPLPQEIREKYELIDLQ 338 Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI-NVEGKIA 262 A IH P ++ E S AR RL +DE Q+ L R + K++ I G++ Sbjct: 339 TAIAQIHFP---ENTEKLSLARRRLVFDEFFYLQLGFLQRRYEQKQQQQSAIFTPHGELL 395 Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 +K +PF T++Q+ + +ILQD+++ + M R++QGDVGSGKT+V + A+ AA++ G Sbjct: 396 EKFSDLLPFRLTQAQQRVVNEILQDLNKPSPMNRLVQGDVGSGKTVVGVFAILAALQGGY 455 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 QA +MAP +LA+QHY+ + + + VE++TG+ A RR+ +++ GQ +++GT Sbjct: 456 QAALMAPTEVLAEQHYQKLVSWFNLLYLPVELLTGSTKTAKRREIHAQLSTGQLPLLVGT 515 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 HAL Q+++ + +L LV++DEQHRFGVQQR KL K APHVL MTATPIPRTL LT GD Sbjct: 516 HALIQETVNFQRLGLVVIDEQHRFGVQQRAKLLAKGNAPHVLSMTATPIPRTLALTLHGD 575 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502 +++S+I E P GR+PI T +I ++ E ++ +++G++ Y I P IEE ++ + ++ Sbjct: 576 LEVSQIDELPPGRQPIHTSVITAKERPQMYELIRREVAQGRQVYIIFPAIEESEKLDIKA 635 Query: 503 VVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560 VE L E +I ++HGR+ +KE+ + +F+ +++++TTVIEVG+DV +A Sbjct: 636 AVEEHKYLTEKIFPNFNIGLLHGRLKSAEKEAALTAFREKQTEIIVSTTVIEVGVDVPNA 695 Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620 ++++IENAE FGL+QLHQLRGRVGRG S C+L+ + S ++ RL V++ ++DGF I Sbjct: 696 TVMVIENAERFGLSQLHQLRGRVGRGSHQSYCLLVTNSK-SNDARQRLGVMEQSQDGFFI 754 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 AE DL+ R GE LG KQSG+P F +A +L +AR+ A+ ++ +DP+L + Sbjct: 755 AEMDLRLRGPGEFLGTKQSGLPDFALASLVEDQEVLLLAREAAETMMVEDPNLEA 809 >gi|145639715|ref|ZP_01795318.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae PittII] gi|145271272|gb|EDK11186.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae PittII] gi|309750684|gb|ADO80668.1| ATP-dependent DNA helicase [Haemophilus influenzae R2866] Length = 693 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 258/678 (38%), Positives = 393/678 (57%), Gaps = 26/678 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI G N DLLF+ P + DR I+ + E+ T Sbjct: 10 PLTSLSGVGAAISNKLAKI---GIQN---LQDLLFHLPIRYEDRTRITPIANLRPEQYFT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G I Q +R + L+DGT +I L FF M +N F G ++ G+IK+ Sbjct: 64 IEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVGVRVKAFGEIKR 121 Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 ++ + HP Y + N+ V + +YS GL + +K+ +AL+ +L + Sbjct: 122 GRHMSEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQALA---LLDKVQ 178 Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242 ++L + P S+ EA ++H P E PA++RL ++ELLA +A+ Sbjct: 179 IAEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQK 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R ++ +P++ + + Q+ L +PF PT +Q+ + DI QD+ + M+R++QGDV Sbjct: 239 VRLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A++ G Q +MAP ILA+QH +++ + I V + G + Sbjct: 299 GSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R+ LE+I G +++GTHALFQ+ +++ L LVI+DEQHRFGV QRL L +K Sbjct: 359 SRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRLMLREKGEKAG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T D+D S I E P GR PI TV++ R E++ R+K Sbjct: 419 FYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRAEIVMRVKNA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 ++E ++AYW+C I+E + ++ + L + +I ++HGRM +K+ VM Sbjct: 479 CVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMR 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FKN LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S C+L+Y Sbjct: 539 FKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PPL K S RL VL++++DGF+I+E+DL+ R GE+LG KQ+G+ + +A ++ Sbjct: 599 KPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRVANLMRDRKMI 658 Query: 657 EIARKDAKHILTQDPDLT 674 + AK ++ + PD+ Sbjct: 659 PTVQHYAKLLIQKYPDVA 676 >gi|146291557|ref|YP_001181981.1| ATP-dependent DNA helicase RecG [Shewanella putrefaciens CN-32] gi|145563247|gb|ABP74182.1| ATP-dependent DNA helicase RecG [Shewanella putrefaciens CN-32] Length = 696 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 252/680 (37%), Positives = 388/680 (57%), Gaps = 30/680 (4%) Query: 10 FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69 P++ +GV KK + L+K+ T DLLF+ P + DR I+ +S Sbjct: 11 LVPITDLKGVAKKVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALSPGSY 64 Query: 70 VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 TI I S Q+ + R ++ N D TG ++L FF +N G I G Sbjct: 65 GTIEAEIQ---STQIIQGRKRMLVCNVRDDTGSLSLRFFNFSVAQ-RNAMQNGLMIRAYG 120 Query: 128 KIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 ++++ ++ +VHP Y + + +DV+ + +Y GL + K+ +AL +L Sbjct: 121 EVRRGSHQAEIVHPEYKVVYPDEDVHLSDTLTPIYPTTEGLKQASWLKLTEQALV---LL 177 Query: 186 PEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAK---DFEWTS-PARERLAYDELLAGQI 238 E +LL + P S+ +A +H P D E PA++RL +ELLA + Sbjct: 178 KEGGLTELLPPQLQPNNISLKQALQTLHRPPAGISQFDLELGQHPAQQRLVQEELLAHNL 237 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 ++L +R++ + + + G++ L +PF PT +Q+ + +I +D+ + + M+R++ Sbjct: 238 SMLRLRQRSNLDAAVTMQATGQLLNPFLAALPFKPTGAQQRVVANIGKDLEKPHPMMRLV 297 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKTLVA +A A+E G Q +MAP +LA+QH + + + V + G Sbjct: 298 QGDVGSGKTLVAAMAALQAIENGYQVAMMAPTELLAEQHATNFAAWFEPLGLKVGWLAGK 357 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + R ++L I G A ++IGTHA+FQ + + KL L+I+DEQHRFGV QRL L +K Sbjct: 358 LKGKARTQSLADIESGAAQMVIGTHAIFQQHVVFNKLALIIIDEQHRFGVHQRLGLREKG 417 Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 + PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV I +R +EV+ER Sbjct: 418 MSQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIADSRRNEVLER 477 Query: 475 LK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532 ++ V+++ ++AYW+C IEE + ++ + L +I ++HGR+ +K+ Sbjct: 478 VRNAVITDQRQAYWVCTLIEESEVLECQAAEDTAEELRLALPDLNIGLVHGRLKSAEKQQ 537 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +M FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C Sbjct: 538 IMADFKAGMIHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAIASHC 597 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +LLY PLS + RLSVL+ + DGF+IA++DL+ R GE+LG KQ+G+ + IA Sbjct: 598 VLLYKAPLSHTATQRLSVLRQSNDGFIIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRD 657 Query: 653 DSLLEIARKDAKHILTQDPD 672 +L+ +K A H++ Q P+ Sbjct: 658 QALIPHIQKLASHVMAQAPE 677 >gi|114049159|ref|YP_739709.1| ATP-dependent DNA helicase RecG [Shewanella sp. MR-7] gi|113890601|gb|ABI44652.1| ATP-dependent DNA helicase RecG [Shewanella sp. MR-7] Length = 696 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 255/679 (37%), Positives = 393/679 (57%), Gaps = 28/679 (4%) Query: 10 FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69 P++ +GV K+ + L+K+ T DLLF+ P + DR I+ + Sbjct: 11 LVPITDLKGVAKRVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALMPGNY 64 Query: 70 VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 TI I S Q+ + R ++ N D TG ++L FF +N G I G Sbjct: 65 GTIEAEIQ---STQIIQGRKRMLVCNVRDNTGSMSLRFFNFSMAQ-RNAMQNGLMIRAYG 120 Query: 128 KIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLP-- 183 +I++ ++ +VHP Y I + +D++ + +Y GL + K+ +AL L Sbjct: 121 EIRRGNHQAEIVHPEYKIVYPGEDIHLSDTLTPIYPTTEGLKQASWIKLTEQALELLEDG 180 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK---DFEWTS-PARERLAYDELLAGQIA 239 L E + +L Q S S+ +A +H P D E PA++RL +ELLA ++ Sbjct: 181 GLTELLPANL-QPNSM-SLKQALQTLHRPHAGISQFDLELGQHPAQQRLVQEELLAHNLS 238 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 +L +R++ + + ++ G++ L ++PF PT +QE + +I +D+ Q + M+R++Q Sbjct: 239 MLRLRQRSNLDAAVTMHASGQLLNPFLTSLPFKPTGAQERVVAEIGKDLEQPHPMMRLVQ 298 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKTLVA +A A+E G Q +MAP +LA+QH + + + V + G + Sbjct: 299 GDVGSGKTLVAALAALQAIENGYQVAMMAPTELLAEQHAANFAAWFEPLGLKVGWLAGKL 358 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R ++L I G A ++IGTHA+FQ + + KL L+I+DEQHRFGV QR+ L +K Sbjct: 359 KGKARAQSLADIESGDAQMVIGTHAIFQQQVTFNKLALIIIDEQHRFGVHQRMGLREKGI 418 Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP +R +EV+ER+ Sbjct: 419 NQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDSRRNEVLERV 478 Query: 476 K-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533 + V+++ ++AYW+C IEE + ++ + L + SI ++HGRM +K+ + Sbjct: 479 RNSVVTDKRQAYWVCTLIEESEVLECQAAEDTAEELRQALPELSIGLVHGRMKSAEKQKI 538 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M FK GT LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C+ Sbjct: 539 MADFKAGTIHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVASHCV 598 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 LLY PLS+ + RL+VL+ + DGF+IA++DL+ R GE+LG KQ+G+ + IA Sbjct: 599 LLYKAPLSQTASQRLNVLRQSNDGFVIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRDQ 658 Query: 654 SLLEIARKDAKHILTQDPD 672 +L+ +K A H+++Q P+ Sbjct: 659 ALIPHIQKLASHVMSQAPE 677 >gi|309972869|gb|ADO96070.1| ATP-dependent DNA helicase [Haemophilus influenzae R2846] Length = 693 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/678 (37%), Positives = 393/678 (57%), Gaps = 26/678 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI G N DLLF+ P + DR I+ + E+ T Sbjct: 10 PLTSLSGVGAAISNKLAKI---GIHN---LQDLLFHLPIRYEDRTRITPIANLRPEQYFT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G I Q +R + L+DGT +I L FF M +N F G ++ G++K+ Sbjct: 64 IEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNVGM-RNSFQVGVRVKAFGEVKR 121 Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 ++ + HP Y + N+ V + +YS GL + +K+ +AL+ +L + Sbjct: 122 GRHMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQALA---LLDKVQ 178 Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242 ++L + P S+ EA ++H P E PA++RL ++ELLA +A+ Sbjct: 179 IAEILPNEFNPHQYSLKEALGLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQK 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R ++ +P++ + + Q+ L +PF PT +Q+ + DI QD+ + M+R++QGDV Sbjct: 239 VRLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A++ G Q +MAP ILA+QH +++ + I V + G + Sbjct: 299 GSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R+ LE+I G +++GTHALFQ+ +++ L LVI+DEQHRFGV QRL L +K Sbjct: 359 SRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRLMLRKKGEKAG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T D+D S I E P GR PI TV++ R E++ R+K Sbjct: 419 FYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRTEIVMRVKNA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 ++E ++AYW+C I+E + ++ + L + +I ++HGRM +K+ VM Sbjct: 479 CVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMR 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FKN LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S C+L+Y Sbjct: 539 FKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PPL K S RL VL++++DGF+I+E+DL+ R GE+LG KQ+G+ + +A ++ Sbjct: 599 KPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRVANLMRDRKMI 658 Query: 657 EIARKDAKHILTQDPDLT 674 + AK ++ + PD+ Sbjct: 659 PTVQHYAKSLIQKYPDVA 676 >gi|198282859|ref|YP_002219180.1| ATP-dependent DNA helicase RecG [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667943|ref|YP_002425060.1| ATP-dependent DNA helicase RecG [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247380|gb|ACH82973.1| ATP-dependent DNA helicase RecG [Acidithiobacillus ferrooxidans ATCC 53993] gi|218520156|gb|ACK80742.1| ATP-dependent DNA helicase RecG [Acidithiobacillus ferrooxidans ATCC 23270] Length = 684 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 244/667 (36%), Positives = 389/667 (58%), Gaps = 15/667 (2%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L + +S RGVG L + + R D+LF+ PS + DR + ++ + + Sbjct: 10 LQSSVSALRGVGPALVPRLQHM------DLWRVQDVLFHLPSRYQDRRHIASMATLQAGQ 63 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 I G I + Q R + + ++DG+G + + F+ T L+ + GR++ G+ Sbjct: 64 ECAILGEIVR-VDHQRGGREQWLVTVSDGSGRLQIRLFH-MTVALRAQWQVGRRLWCFGE 121 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187 ++ + + M+HP + + P + Y G++ +++ + +AL+ L LP+ Sbjct: 122 LRGGFHGLEMIHPEWQMADVPQFQAPRHLTPFYPSSEGITQAQWRRWMAQALTLLDQLPD 181 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS-PARERLAYDELLAGQIALLLMRKQ 246 ++E L +P + E ++H A + PA +RLA +ELLA +A+ MR+ Sbjct: 182 YLENRL--PPQWPGLREGLRLLHE--SADEIPSPQHPAWQRLALEELLANHLAVRRMRQS 237 Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 + + +G++ + L ++PFSPT +QE I +I D+ + M R+LQGDVGSGK Sbjct: 238 GMMQNAPCLRSKGQLWHRFLAHLPFSPTMAQERVIAEINADLVRHRPMRRLLQGDVGSGK 297 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366 TLVA A A+EAG Q +MAP ILA+Q + +++ + + V + G+ RR+ Sbjct: 298 TLVAAAATLTALEAGYQVAMMAPTEILAEQLHARFQQWLEPLGLEVGYLVGSRSPRARRE 357 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426 E +A G ++IGT +LFQ+ + + L LVI+DEQHRFGV+QR +L +K PH+L+M Sbjct: 358 TAETLAGGSLRLVIGTQSLFQEGVVFACLGLVIIDEQHRFGVEQRRQLLEKGAMPHLLVM 417 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486 TATPIPRTL +T D+++S I P GR P++T+++P +R E+I R++ +L G++ Y Sbjct: 418 TATPIPRTLAMTVHADLEVSVIDALPPGRTPVETLVMPDSRRPELIGRMQHMLEAGRQIY 477 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545 W+CP IEE + ++ L ++ +IHGRM +K VM +F++G ++L Sbjct: 478 WVCPLIEESEILELQAAEASVADLQAALPGVAVGLIHGRMRSTEKAEVMAAFQSGAVRIL 537 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 +ATTVIEVG+DV AS++IIE+AE GLAQLHQLRGRVGRG + SSCILLYHPPLS + Sbjct: 538 VATTVIEVGVDVPGASLMIIEHAERLGLAQLHQLRGRVGRGAQRSSCILLYHPPLSGKAR 597 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665 RL V++ T DGF IA +DL+ R GE LG +Q+G+ + +A ++LL + A+ Sbjct: 598 ERLRVMRETHDGFAIARKDLELRGPGEYLGTRQAGILQMRVANILRDEALLVMVPALAER 657 Query: 666 ILTQDPD 672 +L +DP+ Sbjct: 658 LLQEDPE 664 >gi|309704054|emb|CBJ03400.1| ATP-dependent DNA helicase [Escherichia coli ETEC H10407] Length = 693 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 258/676 (38%), Positives = 380/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLAAGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R+ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVHH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L +I ++HGRM +K++VM Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|16131523|ref|NP_418109.1| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr. MG1655] gi|89110360|ref|AP_004140.1| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr. W3110] gi|170083159|ref|YP_001732479.1| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr. DH10B] gi|194435934|ref|ZP_03068037.1| ATP-dependent DNA helicase RecG [Escherichia coli 101-1] gi|238902743|ref|YP_002928539.1| ATP-dependent DNA helicase [Escherichia coli BW2952] gi|253771506|ref|YP_003034337.1| ATP-dependent DNA helicase RecG [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163580|ref|YP_003046688.1| ATP-dependent DNA helicase RecG [Escherichia coli B str. REL606] gi|260857953|ref|YP_003231844.1| ATP-dependent DNA helicase RecG [Escherichia coli O26:H11 str. 11368] gi|260870382|ref|YP_003236784.1| ATP-dependent DNA helicase RecG [Escherichia coli O111:H- str. 11128] gi|297518057|ref|ZP_06936443.1| ATP-dependent DNA helicase RecG [Escherichia coli OP50] gi|300927917|ref|ZP_07143476.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 187-1] gi|312972062|ref|ZP_07786236.1| ATP-dependent DNA helicase RecG [Escherichia coli 1827-70] gi|132252|sp|P24230|RECG_ECOLI RecName: Full=ATP-dependent DNA helicase recG gi|42669|emb|CAA42123.1| recG [Escherichia coli K-12] gi|147545|gb|AAA24513.1| DNA recombinase [Escherichia coli] gi|2367254|gb|AAC76676.1| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr. MG1655] gi|85676391|dbj|BAE77641.1| ATP-dependent DNA helicase [Escherichia coli str. K12 substr. W3110] gi|169890994|gb|ACB04701.1| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr. DH10B] gi|194425477|gb|EDX41461.1| ATP-dependent DNA helicase RecG [Escherichia coli 101-1] gi|238860041|gb|ACR62039.1| ATP-dependent DNA helicase [Escherichia coli BW2952] gi|242379176|emb|CAQ33978.1| RecG DNA helicase [Escherichia coli BL21(DE3)] gi|253322550|gb|ACT27152.1| ATP-dependent DNA helicase RecG [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975481|gb|ACT41152.1| ATP-dependent DNA helicase [Escherichia coli B str. REL606] gi|253979637|gb|ACT45307.1| ATP-dependent DNA helicase [Escherichia coli BL21(DE3)] gi|257756602|dbj|BAI28104.1| ATP-dependent DNA helicase RecG [Escherichia coli O26:H11 str. 11368] gi|257766738|dbj|BAI38233.1| ATP-dependent DNA helicase RecG [Escherichia coli O111:H- str. 11128] gi|300464009|gb|EFK27502.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 187-1] gi|310334439|gb|EFQ00644.1| ATP-dependent DNA helicase RecG [Escherichia coli 1827-70] gi|323155305|gb|EFZ41488.1| ATP-dependent DNA helicase RecG [Escherichia coli EPECa14] gi|323177657|gb|EFZ63241.1| ATP-dependent DNA helicase RecG [Escherichia coli 1180] gi|323934803|gb|EGB31185.1| ATP-dependent DNA helicase RecG [Escherichia coli E1520] gi|323959900|gb|EGB55548.1| ATP-dependent DNA helicase RecG [Escherichia coli H489] gi|323971294|gb|EGB66539.1| ATP-dependent DNA helicase RecG [Escherichia coli TA007] gi|332345641|gb|AEE58975.1| ATP-dependent DNA helicase RecG [Escherichia coli UMNK88] Length = 693 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 380/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLAAGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R+ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVHH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|254038853|ref|ZP_04872905.1| ATP-dependent DNA helicase recG [Escherichia sp. 1_1_43] gi|226838818|gb|EEH70845.1| ATP-dependent DNA helicase recG [Escherichia sp. 1_1_43] Length = 704 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 380/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 21 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 74 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 75 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLAAGRRVLAYGEAKR 132 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 133 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 190 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 191 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 248 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 249 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 308 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 309 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 368 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 369 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 428 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R+ Sbjct: 429 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVHH 488 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 489 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 548 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 549 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 608 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 609 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 668 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 669 IPEVQRLARHIHERYP 684 >gi|168235359|ref|ZP_02660417.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194735749|ref|YP_002116687.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194711251|gb|ACF90472.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291521|gb|EDY30873.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 693 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 255/676 (37%), Positives = 380/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI DLL + P + DR + I E+ T Sbjct: 10 PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q S+ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + +L ++PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRYHAQPLSTNNILKDNLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + + V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R+ E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R E+I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +EG++AYW+C IEE ++ + L +I ++HGRM +K++VM Sbjct: 478 ACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRIARHIHERYP 673 >gi|238797644|ref|ZP_04641140.1| ATP-dependent DNA helicase recG [Yersinia mollaretii ATCC 43969] gi|238718508|gb|EEQ10328.1| ATP-dependent DNA helicase recG [Yersinia mollaretii ATCC 43969] Length = 666 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 247/645 (38%), Positives = 378/645 (58%), Gaps = 20/645 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLL + P + DR +I ++ VT+ G + + S +RR ++DG+G +T Sbjct: 8 DLLLHLPLRYEDRTQLYRIGDLLPGISVTVEGEVLR-SDITFGRRRMMTCQISDGSGVLT 66 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA---V 159 L FF M KN G+ + G+ K+ ++HP Y H +++ L E+ V Sbjct: 67 LRFFNFNAAM-KNSLSPGKHVIAYGEAKRGNTGPEIIHPEYRVHG-ENIGVELQESLTPV 124 Query: 160 YSLPTGLSVDLFKKIIVEALSRL--PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR---K 214 Y G+ +K+I +AL+ L V+ E + +L +S S+ EA + +H P + Sbjct: 125 YPTTEGIRQATLRKLIDQALAMLDTTVIAELLPIEL--SRSLISLPEAIHTLHRPPANIQ 182 Query: 215 AKDFEWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 D E PA+ RL +ELLA +++L +R + +P+ E ++ + L +PF+P Sbjct: 183 LVDLEQGKHPAQRRLIMEELLAHNLSMLAVRAGAQSYRALPLLAEDQLKPRFLAALPFTP 242 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T++Q+ + +I QDM+ M+R++QGDVGSGKTLVA +A A+ G Q +MAP +L Sbjct: 243 TRAQQRVVAEIEQDMTHNFPMMRLIQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELL 302 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QH +++ + + V + G R E +A GQ +++GTHA+FQ+ +++ Sbjct: 303 AEQHANTFRQWLEPLGLEVGWLAGKQKGKARLAQQEAVASGQVSMVVGTHAMFQEQVKFS 362 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKIT 449 L LVI+DEQHRFGV QRL L +K PH L+MTATPIPRTL +T+ D+D S I Sbjct: 363 GLALVIIDEQHRFGVHQRLALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSVID 422 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 E P GR P+ TV IP R +VI+R+K L EG++AYW+C IEE + ++ Sbjct: 423 ELPPGRTPVTTVAIPDTRRSDVIQRVKNACLEEGRQAYWVCTLIEESELLEAQAAEVTCE 482 Query: 509 SLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 L ++ ++HGRM +K++VM +FK G +LL+ATTVIEVG+DV +AS++II+N Sbjct: 483 ELKIALPEINVGLVHGRMKGPEKQAVMLAFKQGELQLLVATTVIEVGVDVPNASLMIIDN 542 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627 E GLAQLHQLRGRVGRG S C+LLY PLSK + RL VL+++ DGF+IA+ DL+ Sbjct: 543 PERLGLAQLHQLRGRVGRGAVASHCVLLYKTPLSKTAQMRLQVLRDSNDGFVIAQRDLEI 602 Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 R GE+LG +Q+G +F +A +++ ++ A+H+ Q P+ Sbjct: 603 RGPGELLGTRQTGSAEFKVADLLRDQAMIPEVQRVARHLHQQYPE 647 >gi|148825722|ref|YP_001290475.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae PittEE] gi|229846915|ref|ZP_04467021.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae 7P49H1] gi|148715882|gb|ABQ98092.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae PittEE] gi|229809999|gb|EEP45719.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae 7P49H1] Length = 693 Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust. Identities = 258/678 (38%), Positives = 392/678 (57%), Gaps = 26/678 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI G N DLLF+ P + DR I+ + E+ T Sbjct: 10 PLTSLSGVGAAISNKLAKI---GIHN---LQDLLFHLPIRYEDRTRITPIANLRPEQYFT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G I Q +R + L+DGT +I L FF M +N F G ++ G++K+ Sbjct: 64 IEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVGVRVKAFGEVKR 121 Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + + HP Y + N+ V + +YS GL + +K+ +AL+ +L + Sbjct: 122 GRYMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQALA---LLDKVQ 178 Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242 ++L + P S+ EA ++H P E PA++RL ++ELLA +A+ Sbjct: 179 IAEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQK 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R ++ +P++ + + Q+ L +PF PT +Q+ + DI QD+ + M+R++QGDV Sbjct: 239 VRLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A++ G Q +MAP ILA+QH +++ + I V + G + Sbjct: 299 GSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRQWFEPFGIEVGWLAGKVKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R+ LE+I G +++GTHALFQ+ +++ L LVI+DEQHRFGV QRL L +K Sbjct: 359 SRQAELEKIKTGTVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRLMLREKGEKAG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T D+D S I E P GR PI TV++ R E++ R+K Sbjct: 419 FYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRAEIVMRVKNA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 ++E ++AYW+C I+E + ++ + L + +I ++HGRM +K+ VM Sbjct: 479 CVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMR 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FKN LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S C+L+Y Sbjct: 539 FKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PPL K S RL VL++++DGF+I+E+DL+ R GE+LG KQ+G+ + +A ++ Sbjct: 599 KPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRVANLMRDRKMI 658 Query: 657 EIARKDAKHILTQDPDLT 674 + AK ++ + PDL Sbjct: 659 PTVQHYAKSLIQKYPDLA 676 >gi|320661351|gb|EFX28775.1| ATP-dependent DNA helicase RecG [Escherichia coli O55:H7 str. USDA 5905] Length = 693 Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/676 (37%), Positives = 381/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P R P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPSRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|331675129|ref|ZP_08375886.1| ATP-dependent DNA helicase RecG [Escherichia coli TA280] gi|331068038|gb|EGI39436.1| ATP-dependent DNA helicase RecG [Escherichia coli TA280] Length = 704 Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/675 (37%), Positives = 380/675 (56%), Gaps = 28/675 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 LS+ GVG S L+KI N DLL + P + DR + I E+ T+ Sbjct: 22 LSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATV 75 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 76 EGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKRG 133 Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VLP 186 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 134 KYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLATCAIE 191 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALLL 242 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 192 ELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSMLA 249 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGDV Sbjct: 250 LRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDAPMMRLVQGDV 309 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 310 GSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKGK 369 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 370 ARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQG 429 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 430 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRHA 489 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM S Sbjct: 490 CMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMAS 549 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLY Sbjct: 550 FKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLY 609 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A +++ Sbjct: 610 KTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMI 669 Query: 657 EIARKDAKHILTQDP 671 ++ A+HI + P Sbjct: 670 PEVQRLARHIHERYP 684 >gi|21232667|ref|NP_638584.1| ATP-dependent DNA helicase RecG [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767279|ref|YP_242041.1| ATP-dependent DNA helicase RecG [Xanthomonas campestris pv. campestris str. 8004] gi|21114475|gb|AAM42508.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572611|gb|AAY48021.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris str. 8004] Length = 713 Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust. Identities = 255/705 (36%), Positives = 384/705 (54%), Gaps = 50/705 (7%) Query: 3 PSFLNPLFAPLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 PS APLS+ GVG K + F ++ I DL + P + DR I Sbjct: 9 PSLAVAGQAPLSSLPGVGPKVAEKFAARGI-------LSLQDLWLHLPLRYEDRTRLTTI 61 Query: 62 SEISEERIVTITGYI-SQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEMLKNVFF 118 +++ I G + + F+ RP + +D G + L FF+ + + F Sbjct: 62 AQLQGGVPAQIEGRVEAMERGFRF---RPVLRVAMSDDSCGTLVLRFFHFRAAQVAQ-FS 117 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIV 176 G ++ V G K +N +VHP Y + +D ++ VY + G+ +K+I Sbjct: 118 PGTRLRVFGTPKPGQNGWEIVHPSYRVLAPDEDAGLGDCLDPVYPVLEGVGPATLRKLIG 177 Query: 177 EALSRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPAR 225 +AL RLP + P W LQ + PS+ A +H P D PA+ Sbjct: 178 QALERLPPEAALELLPPHW-----LQDEQLPSLRSALLTMHRPPVDTDPQQLLAGGHPAQ 232 Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285 +RLA +ELLA Q++L R ++ P G++ Q++ + +PF T +Q+ + I Sbjct: 233 QRLAIEELLAHQVSLRRQRIALQR-FRAPQLRGGRLVQQLRKALPFQLTGAQQRVFEQIA 291 Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345 D++Q MLR++QGDVGSGKT+VA +A AVE G Q + AP +LA+QH ++ + Sbjct: 292 HDLAQPAPMLRLVQGDVGSGKTVVAALAAMLAVEHGKQVALAAPTELLAEQHLANLRGWL 351 Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405 + + + + G + R A+ +A GQA +++GTHAL QD++ ++ L L I+DEQHR Sbjct: 352 EPLGVRIVWLAGKVTGKARVAAMAEVASGQAQVVVGTHALMQDAVVFHDLALAIIDEQHR 411 Query: 406 FGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461 FGV QRL L K A PH L+MTATPIPRTL + + D+ +S I E P GR P++T+ Sbjct: 412 FGVHQRLALRDKGAAAGSVPHQLVMTATPIPRTLAMAAYADLHVSAIDELPPGRTPVQTI 471 Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-----------FRSVVERFNSL 510 ++ R E++ER++ +EG++AYW+C IEE ++++ ++ F +L Sbjct: 472 VLSAERRPELVERIRAACAEGRQAYWVCTLIEESEDTDKGAQNGPPRIEAQAAQVTFETL 531 Query: 511 HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 +A++HGRM +K+ M FK G LL+ATTVIEVG+DV +AS++IIENAE Sbjct: 532 SAQLPGVRVALVHGRMKPAEKQQAMLDFKQGRTDLLVATTVIEVGVDVPNASLMIIENAE 591 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629 GLAQLHQLRGRVGRG SSC+LLY PLS + RL ++ T DGF+IAE DL+ R Sbjct: 592 RLGLAQLHQLRGRVGRGAAASSCVLLYQGPLSLMARQRLETMRQTNDGFVIAERDLELRG 651 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 GE+LG +Q+G+ F IA LL + A+ +L + P++ Sbjct: 652 PGELLGTRQTGLASFRIADLARDAGLLPRVQVLAERLLDEAPEIA 696 >gi|237728948|ref|ZP_04559429.1| ATP-dependent DNA helicase RecG [Citrobacter sp. 30_2] gi|226909570|gb|EEH95488.1| ATP-dependent DNA helicase RecG [Citrobacter sp. 30_2] Length = 693 Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 378/676 (55%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI DLL + P + DR + I E+ T Sbjct: 10 PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFEWTS-PARERLAYDELLAGQIALL 241 E + +LLQ S+ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 AELLPPELLQ--GMMSLPEALRTLHRPPPSLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANNALKDKLLAALPFKPTGAQAHVTAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGVEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDIIDRVRN 477 Query: 478 VLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 + EG++AYW+C IEE ++ + L +I ++HGRM +K+SVM Sbjct: 478 ACTHEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQSVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGTAEFKVADLLRDQAI 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRIARHIHERYP 673 >gi|56750479|ref|YP_171180.1| ATP-dependent DNA helicase RecG [Synechococcus elongatus PCC 6301] gi|81299888|ref|YP_400096.1| ATP-dependent DNA helicase RecG [Synechococcus elongatus PCC 7942] gi|56685438|dbj|BAD78660.1| ATP-dependent DNA helicase RecG [Synechococcus elongatus PCC 6301] gi|81168769|gb|ABB57109.1| ATP-dependent DNA helicase RecG [Synechococcus elongatus PCC 7942] Length = 817 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 237/681 (34%), Positives = 392/681 (57%), Gaps = 30/681 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRPKISEISEERIVT 71 L+ +GVG + + L ++ E R + DLL ++P +++D + I + T Sbjct: 125 LTYLKGVGPRVAAQLERL-------ELRTVRDLLHHYPRNYVDYARQVNIRALEPGETAT 177 Query: 72 ITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKT--------EMLKNVFFEG 120 + G + + + F + IL + DG+G++ L F+ T E + ++ G Sbjct: 178 LIGAVQRCTCFTSPRNAKLTILELVVRDGSGQLRLSRFFMGTRYSGRGWQEQQRRLYPPG 237 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQD-----VNFPLIEAVYSLPTGLSVDLFKKII 175 I +G +K+ K + + +P +S D + I +Y L G++ D ++ I Sbjct: 238 TMIAASGLVKRSKYGVTLDNPEIEVLDSPDSPIASLKVGRIVPIYPLTEGVAADTLRRAI 297 Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235 V+AL L + + L ++ + +A IH P E AR RL +DE L Sbjct: 298 VQALPAAEQLRDPLPTVLREQHQLLVLNQAIAAIHFPETP---ELLQQARRRLVFDEFLY 354 Query: 236 GQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 Q+ LL R + + + G++ + + +PF T +Q+ + DIL D+ Q M Sbjct: 355 LQLGLLQRRARQRAAAAAAVLAPTGELIDRFYQLLPFQLTGAQQRVVNDILTDLQQPWPM 414 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R++QGDVGSGKT+VA++++ AA++AG Q +MAP +LA+QHY + + + VE+ Sbjct: 415 NRLVQGDVGSGKTVVAIVSLLAAIQAGYQGALMAPTEVLAEQHYRKLVDWCTQLHLPVEL 474 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 +TG+ A RR+ +A G+ +++GTHAL QD + + L LV++DEQHRFGV QR KL Sbjct: 475 LTGSTRAAKRREIQRSLATGELPLLVGTHALIQDPVDFQNLGLVVIDEQHRFGVAQRAKL 534 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 QK PHVL MTATPIPRTL LT GD+++S+I E P GR+PI+T + + + Sbjct: 535 QQKGVNPHVLTMTATPIPRTLALTLHGDLEVSQIDELPPGRQPIQTTALGPSDRHHAHDL 594 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533 ++ +++G++ Y + P +EE ++ + RS +E + L + F I ++HGRMS +K++ Sbjct: 595 MRREIAQGRQVYVVLPLVEESEKLDLRSAIEEYQRLSQVFPEFQIGLLHGRMSSAEKDAA 654 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 + +F++ +L++TTV+EVG+DV +A++++IE+AE FGL+QLHQLRGRVGRG S C+ Sbjct: 655 IAAFRDRQTDILVSTTVVEVGVDVPNATVMLIEHAERFGLSQLHQLRGRVGRGAARSYCL 714 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 L+ S+ + RL V++ ++DGF IAE DL+ R G++LG +QSG+P F +A Sbjct: 715 LM-SASRSETAQQRLKVMEQSQDGFFIAEMDLRLRGPGQVLGTRQSGLPDFALASLVEDQ 773 Query: 654 SLLEIARKDAKHILTQDPDLT 674 +L++AR A+ ++ QDP+LT Sbjct: 774 DVLDLARTTAEQLIEQDPELT 794 >gi|293393636|ref|ZP_06637946.1| DNA helicase RecG [Serratia odorifera DSM 4582] gi|291423971|gb|EFE97190.1| DNA helicase RecG [Serratia odorifera DSM 4582] Length = 693 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 255/682 (37%), Positives = 385/682 (56%), Gaps = 38/682 (5%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+T GVG + L+KI ET DLL + P + DR I E+ T Sbjct: 10 PLTTLSGVGASQAGKLAKI-----GLET-IQDLLLHLPLRYEDRTRLYPIGELLSGIFAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + +RR ++DGTG +T+ FF M KN GR++T G++K+ Sbjct: 64 VEGEVLR-TDISFGRRRMLTCQISDGTGILTMRFFNFNAAM-KNSLATGRRVTAYGEVKR 121 Query: 132 LKNRIIMVHPHYIF---HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL------ 182 + ++HP Y H+ ++ L VY G+ +K+ +AL+ L Sbjct: 122 GNHGAEIIHPEYRIQGEHSEVELQESLT-PVYPTTEGIRQATLRKLTDQALTLLDTCAIA 180 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS------PARERLAYDELLAG 236 +LP + L+ S+ +A + +H P A D + PA++RL +ELLA Sbjct: 181 ELLPTELSGGLM------SLPQALHTLHRP--APDIQLADLEQGRHPAQKRLIMEELLAH 232 Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 +++L +R + P+ + ++ + L +PF+PT +Q + DI D+ + M+R Sbjct: 233 NLSMLAVRAGAQSYHAQPLMPDDRLKNQFLAQLPFAPTGAQRRVVADIEADLQKNFPMMR 292 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 ++QGDVGSGKTLVA +A A+ G Q +MAP +LA+QH +++ + I V + Sbjct: 293 LVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRQWFEPLGIEVGWLA 352 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G R E IA GQ +++GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L + Sbjct: 353 GKQKGKARIAQQEAIASGQVSMVVGTHAMFQEQVQFNGLALVIIDEQHRFGVHQRLALWE 412 Query: 417 KATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 K H L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I Sbjct: 413 KGEEQGYHAHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRADII 472 Query: 473 ERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530 ER++ L EG++AYW+C IEE + ++ + L +A++HGRM +K Sbjct: 473 ERVRNACLQEGRQAYWVCTLIEESELLEAQAAEATWEELKTALPELKVALVHGRMKAQEK 532 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 ++VM +FK G +LL+ATTVIEVG+DV +AS++II+N E GLAQLHQLRGRVGRG S Sbjct: 533 QAVMQAFKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAVAS 592 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 C+LLY PLSK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G +F +A Sbjct: 593 HCVLLYKTPLSKTAQKRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKVADLL 652 Query: 651 LHDSLLEIARKDAKHILTQDPD 672 +++ ++ A+HI P+ Sbjct: 653 RDQAMIPEVQRVARHIHQNYPE 674 >gi|218556215|ref|YP_002389128.1| ATP-dependent DNA helicase RecG [Escherichia coli IAI1] gi|218362983|emb|CAR00621.1| ATP-dependent DNA helicase [Escherichia coli IAI1] Length = 693 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/676 (37%), Positives = 381/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF T +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKQTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|320179990|gb|EFW54932.1| ATP-dependent DNA helicase RecG [Shigella boydii ATCC 9905] Length = 693 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/676 (37%), Positives = 379/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPV--L 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIEHDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIVHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA Q +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASSQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|114561544|ref|YP_749057.1| ATP-dependent DNA helicase RecG [Shewanella frigidimarina NCIMB 400] gi|114332837|gb|ABI70219.1| ATP-dependent DNA helicase RecG [Shewanella frigidimarina NCIMB 400] Length = 705 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/676 (37%), Positives = 383/676 (56%), Gaps = 24/676 (3%) Query: 10 FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69 P++ +GV KK + L+K+ D+LF+ P + DR I+ + Sbjct: 20 LVPITDLKGVAKKVAEKLAKL------GIKTVQDVLFHLPLRYEDRTQIHPIAALPPGSF 73 Query: 70 VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 TI I Q + +RR ++D +G ++L FF +N G I G+I Sbjct: 74 GTIEAEI-QSTQIMQGRRRMLVCNVHDHSGMMSLRFFNFSMAQ-RNAMENGASIRAYGEI 131 Query: 130 KKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPV--L 185 ++ + +VHP Y I H + V + +Y G+ + K+ +AL+ L L Sbjct: 132 RRGNHHKEIVHPEYQIIHPGESVTLSDTLTPIYPTTEGVKQASWIKLTEQALAMLDQGGL 191 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKA-KDFEWTS---PARERLAYDELLAGQIALL 241 PE + L + + S+ +A +I+H P + FE PA++RL +ELLA +++L Sbjct: 192 PELLPSAL--QPNNISLRDALHILHRPHSSVSPFELEQGQHPAQQRLIQEELLAHNLSML 249 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R++ ++ +P+ G++ L +PF PT +Q+ + +I QD+ M+R++QGD Sbjct: 250 QLRQRSNQDAAVPMPATGQLLSPFLAQLPFKPTGAQQRVVAEINQDLQHPTPMMRLVQGD 309 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+E G Q +MAP +LA+QH + + + V + G + Sbjct: 310 VGSGKTLVAALAALQAIENGYQVAMMAPTELLAEQHAANFATWFEPLGLKVGWLAGKLKG 369 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R ++LE IA G A ++IGTHA+FQ ++ + KL L+I+DEQHRFGV QRL L +K + Sbjct: 370 KARIQSLEDIASGAAQMVIGTHAIFQQAVVFNKLALIIIDEQHRFGVHQRLGLREKGVSQ 429 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV I R ++VIER+K Sbjct: 430 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIADTRREQVIERVKQ 489 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 L + ++AYW+C IEE + ++ + L I +IHGRM +K+++M Sbjct: 490 AALHDNRQAYWVCTLIEESEVLECQAAEDTAAELTIALPELKIGLIHGRMKSAEKQTIMA 549 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 550 QFKAGELNLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 609 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLS+ + RL VL+N+ DGF+IA++DL+ R GE+LG KQ+G+ IA L Sbjct: 610 YKAPLSQTATKRLGVLRNSNDGFVIAQKDLEIRGPGEVLGTKQTGLADLKIADLIRDQHL 669 Query: 656 LEIARKDAKHILTQDP 671 + +K A H+ Q P Sbjct: 670 IAPTQKLASHVYQQVP 685 >gi|260447329|gb|ACX37751.1| ATP-dependent DNA helicase RecG [Escherichia coli DH1] gi|315138234|dbj|BAJ45393.1| ATP-dependent DNA helicase RecG [Escherichia coli DH1] Length = 693 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 379/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLAAGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R+ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVHH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTVQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|262273556|ref|ZP_06051370.1| ATP-dependent DNA helicase RecG [Grimontia hollisae CIP 101886] gi|262222534|gb|EEY73845.1| ATP-dependent DNA helicase RecG [Grimontia hollisae CIP 101886] Length = 693 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 252/661 (38%), Positives = 385/661 (58%), Gaps = 26/661 (3%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MR S L+ + P+++ GVG K + L K+ DLLF+ P + DR Sbjct: 1 MRASMLDAV--PVTSLTGVGGKMAEKLEKL------GLFTVQDLLFHLPYRYEDRTRVWP 52 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 I + + T+ G + +++ +RR + + DG G +TL FF M KN +G Sbjct: 53 IMSLMPGQHATVEGEVVSNNTV-FGRRRMLTVKITDGNGSLTLRFFNFNAAM-KNSLEQG 110 Query: 121 RKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEA-VYSLPTGLSVDLFKKIIVEA 178 +++ G+IK+ ++ + ++HP Y +F ++ VY GL + + +A Sbjct: 111 KRVKAYGEIKRGQSGLEIIHPEYKVFSEPTELTLEETLTPVYPTTEGLRQLTLRNLTSQA 170 Query: 179 LSRL--PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK----AKDFEWTSPARERLAYDE 232 L+ L + E + + L ++ ++ +A I+H P A+ + PA++RL +E Sbjct: 171 LALLDGAAVQELLPEGLYDRQI--TLRDALKILHRPTPDISVAQLEKGEHPAQKRLILEE 228 Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292 LLA +++L +R + +++ + ++ K+L ++PFSPT +Q + DI +DM Sbjct: 229 LLAQNLSMLAVRSKLQQDPTFSLPPSTELKPKLLASLPFSPTGAQSRVVADIERDMGLNK 288 Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352 M+R++QGDVGSGKTLVA +A A+E G Q +MAP +LA+QH + + I V Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALQAIEQGYQVALMAPTELLAEQHAINFANWLEPLGISV 348 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 + G + + L IA G+A +++GTHALFQ +++ KL LVI+DEQHRFGV QRL Sbjct: 349 GWLAGKLTGKAKEAQLASIASGEAKMVVGTHALFQKQVEFDKLALVIIDEQHRFGVHQRL 408 Query: 413 KLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468 +L +K PH L+MTATPIPRTL +T+ D+D S I E P GR PI+TV +P R Sbjct: 409 ELREKGMKQGIHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPIQTVAVPDTRR 468 Query: 469 DEVIERL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526 ++I R+ + EG++AYW+C I+E + ++ + + L I ++HGRM Sbjct: 469 IDIINRVHAACIGEGRQAYWVCTLIDESEVLEAQAAADTADDLARALPDLKIGLVHGRMK 528 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 +K++VM +FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG Sbjct: 529 AAEKQAVMQAFKAGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588 Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646 S C+LLYH PLSK + RL VL+ + DGF+IA+ DL+ R GE+LG KQ+G+ +F I Sbjct: 589 SVASHCVLLYHAPLSKTATQRLGVLRESSDGFVIAQRDLEIRGPGELLGTKQTGIAEFKI 648 Query: 647 A 647 A Sbjct: 649 A 649 >gi|260582089|ref|ZP_05849884.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae NT127] gi|260094979|gb|EEW78872.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae NT127] Length = 693 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/677 (37%), Positives = 393/677 (58%), Gaps = 26/677 (3%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L++ GVG S L+KI G N DLLF+ P + DR I+ + E+ TI Sbjct: 11 LTSLSGVGAAISNKLAKI---GIHN---LQDLLFHLPIRYEDRTRITPIANLRPEQYFTI 64 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G I Q +R + L+DGT +I L FF M +N F G ++ G++K+ Sbjct: 65 EG-IVQTCEVAFSRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVGVRVKAFGEVKRG 122 Query: 133 KNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190 ++ + HP Y + N+ V + +YS+ GL + +K+ +AL+ +L + Sbjct: 123 RHMPEIHHPEYQIVRDNAPIVLEETLTPIYSITEGLKQNSLRKLTDQALT---LLDKVQI 179 Query: 191 KDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLM 243 ++L + P S+ EA ++H P E PA++RL ++ELLA +A+ + Sbjct: 180 AEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQKV 239 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 R ++ +P++ + + Q+ L +PF PT +Q+ + DI QD+ + M+R++QGDVG Sbjct: 240 RLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDVG 299 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKTLVA +A A++ G Q +MAP ILA+QH +++ + I V + G + Sbjct: 300 SGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGKS 359 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420 R+ LE+I G +++GTHALFQ+ +++ L LVI+DEQHRFGV QRL L +K Sbjct: 360 RQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRLMLRKKGEKAGF 419 Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478 PH L+MTATPIPRTL +T D+D S I E P GR PI TV++ R E++ R+K Sbjct: 420 YPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRTEIVMRVKNAC 479 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 ++E ++AYW+C I+E + ++ + L + +I ++HGRM +K+ VM F Sbjct: 480 VNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMRF 539 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 KN LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S C+L+Y Sbjct: 540 KNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYK 599 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PPL K S RL VL++++DGF+I+E+DL+ R GE+LG KQ+G+ + +A ++ Sbjct: 600 PPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRVANLMRDRKMIP 659 Query: 658 IARKDAKHILTQDPDLT 674 + AK ++ + PD+ Sbjct: 660 TVQHYAKSLIQKYPDVA 676 >gi|283787716|ref|YP_003367581.1| ATP-dependent DNA helicase [Citrobacter rodentium ICC168] gi|282951170|emb|CBG90862.1| ATP-dependent DNA helicase [Citrobacter rodentium ICC168] Length = 693 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 253/676 (37%), Positives = 380/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ G+G S L+KI DLL + P + DR + I E+ T Sbjct: 10 PLNSLTGIGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR + DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNVTFGGRRMMTCQIGDGSGILTMRFFNFSAAM-KNSLAAGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL + + Sbjct: 122 GKYGAEMIHPEYRIQG--DLSTPALQETLTPVYPTTEGIKQATLRKLTDQALDLMDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q S+ EA +H P K D E PA+ RL +ELLA +++L Sbjct: 180 AELLPPELSQ--GMMSLPEALRTLHRPPPTLKLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L ++PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLASLPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH +++ + V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGRQVALMAPTELLAEQHANNFRQWFAPLGVEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R+ E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGEQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDIIDRVRN 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 + EG++AYW+C IEE ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACIQEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAI 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRIARHIHERYP 673 >gi|23008733|ref|ZP_00050052.1| COG1200: RecG-like helicase [Magnetospirillum magnetotacticum MS-1] Length = 380 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 194/382 (50%), Positives = 275/382 (71%), Gaps = 2/382 (0%) Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366 T VAL+AMA+AVEAG QA +MAP ILA+QHYE + ++ ++TG A RR Sbjct: 1 TAVALLAMASAVEAGRQAALMAPTEILARQHYERLVPLAGAMRL--RLLTGRDKAAERRA 58 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426 L +A G+ I++GTHALFQ+++ + L L +VDEQHRFGV QRL L K A +L+M Sbjct: 59 TLADLAAGEIDIVVGTHALFQEAVAFRDLGLAVVDEQHRFGVHQRLALGAKGEAVDILVM 118 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486 TATPIPRTL LT GD+D+S + EKPAGR+PIKT+ +P+ RIDEV++ L L+ G + Y Sbjct: 119 TATPIPRTLALTFFGDMDVSVLDEKPAGRQPIKTITVPVERIDEVVDGLHRALAAGDRVY 178 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 WICP + E + + + ERF+ L +HF + +IHG+M +K++ M++F G ++L+ Sbjct: 179 WICPLVAESEYVDLAAAAERFDDLRKHFGDQVGLIHGKMPGPEKDAAMEAFAAGRTRVLV 238 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 +TTV+EVG+DV +A+I++IE+AE FGLAQLHQLRGRVGRG + SSC+LLY PL + + Sbjct: 239 STTVVEVGVDVPEATIMVIEHAERFGLAQLHQLRGRVGRGSKASSCLLLYRGPLGQVAKA 298 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666 RL +++ +EDGF IAEEDL+ R EGE+LG +QSGM F +A+ E +LLE AR DA+ I Sbjct: 299 RLEMMRASEDGFRIAEEDLRLRGEGEVLGTRQSGMAAFRLARLESDGALLEAARDDARLI 358 Query: 667 LTQDPDLTSVRGQSIRILLYLY 688 + +DP ++S RG+++R+L+YL+ Sbjct: 359 VERDPRVSSERGRALRVLIYLF 380 >gi|217971561|ref|YP_002356312.1| ATP-dependent DNA helicase RecG [Shewanella baltica OS223] gi|217496696|gb|ACK44889.1| ATP-dependent DNA helicase RecG [Shewanella baltica OS223] Length = 691 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 251/680 (36%), Positives = 387/680 (56%), Gaps = 30/680 (4%) Query: 10 FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69 P++ +GV KK + L+K+ T DLLF+ P + DR I+ + Sbjct: 6 LVPITDLKGVAKKVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALMPGSY 59 Query: 70 VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 TI I S Q+ + R ++ N D TG ++L FF +N G I G Sbjct: 60 GTIEAEIQ---STQIIQGRKRMLVCNVRDDTGSLSLRFFNFSIAQ-RNAMQNGLMIRAYG 115 Query: 128 KIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 ++++ ++ +VHP Y + + +DV+ + +Y GL + K+ +AL +L Sbjct: 116 EVRRGGHQAEIVHPEYKVVYPGEDVHLSDTLTPIYPTTEGLKQASWLKLTEQALV---LL 172 Query: 186 PEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAK---DFEWTS-PARERLAYDELLAGQI 238 + +LL + P S+ +A +H P D E PA++RL +ELLA + Sbjct: 173 EDGGLTELLPPQLQPNNISLKQALQTLHRPPAGISQFDLELGQHPAQQRLVQEELLAHNL 232 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 ++L +R++ + + + G++ L +PF PT +Q+ + DI +D+ Q + M+R++ Sbjct: 233 SMLRLRQRSNLDAAVTMQATGQLLNPFLAALPFKPTGAQQRVVADIGKDLEQPHPMMRLV 292 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKTLVA +A A+E G Q +MAP +LA+QH + + + V + G Sbjct: 293 QGDVGSGKTLVAAMAALQAIENGYQVAMMAPTELLAEQHATNFAAWFEPLGLKVGWLAGK 352 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + R ++L I G A ++IGTHA+FQ + + KL L+I+DEQHRFGV QRL L +K Sbjct: 353 LKGKARAQSLADIESGAAQMVIGTHAIFQQHVVFNKLALIIIDEQHRFGVHQRLGLREKG 412 Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 + PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV I +R +EV+ER Sbjct: 413 VSQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIADSRRNEVLER 472 Query: 475 LK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532 ++ V+++ ++AYW+C IEE + ++ + L +I ++HGR+ +K+ Sbjct: 473 VRNAVITDKRQAYWVCTLIEESEVLECQAAEDTAEELRLALPELNIGLVHGRLKSAEKQQ 532 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +M FK G LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C Sbjct: 533 IMADFKAGIIHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAIASHC 592 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +LLY PLS + RLSVL+ + DGF+IA++DL+ R GE+LG KQ+G+ + IA Sbjct: 593 VLLYKAPLSNTATQRLSVLRQSNDGFIIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRD 652 Query: 653 DSLLEIARKDAKHILTQDPD 672 +L+ +K A H++ Q P+ Sbjct: 653 QALIPHIQKLANHVMAQAPE 672 >gi|293417113|ref|ZP_06659740.1| ATP-dependent DNA helicase RecG [Escherichia coli B185] gi|291431144|gb|EFF04137.1| ATP-dependent DNA helicase RecG [Escherichia coli B185] Length = 693 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/676 (37%), Positives = 379/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLQTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALNVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++ G +AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACMTGGCQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|330909713|gb|EGH38227.1| ATP-dependent DNA helicase RecG [Escherichia coli AA86] Length = 693 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 380/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSTNDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A AV G Q +MAP +LA+QH + + I V + Sbjct: 298 VGSGKTLVAALAALRAVAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLARKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMT 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|16273626|ref|NP_439884.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae Rd KW20] gi|260580699|ref|ZP_05848526.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae RdAW] gi|1172894|sp|P43809|RECG_HAEIN RecName: Full=ATP-dependent DNA helicase recG gi|1574599|gb|AAC23387.1| ATP-dependent DNA helicase (recG) [Haemophilus influenzae Rd KW20] gi|260092761|gb|EEW76697.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae RdAW] Length = 693 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/678 (37%), Positives = 393/678 (57%), Gaps = 26/678 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI G N DLLF+ P + DR I+ + E+ T Sbjct: 10 PLTSLSGVGAAISNKLAKI---GIHN---LQDLLFHLPIRYEDRTRITLIANLRPEQYFT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G I Q +R + L+DGT +I L FF M +N F G ++ G++K+ Sbjct: 64 IEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVGVRVKAFGEVKR 121 Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 ++ + HP Y + N+ V + +YS GL + +K+ +AL+ +L + Sbjct: 122 GRHMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQALA---LLDKVQ 178 Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242 ++L + P S+ EA ++H P E PA++RL ++ELLA +A+ Sbjct: 179 IAEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQK 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R ++ +P++ + + Q+ L +PF PT +Q+ + DI QD+ + M+R++QGDV Sbjct: 239 VRLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A++ G Q +MAP ILA+QH +++ + I V + G + Sbjct: 299 GSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFKPFGIEVGWLAGKVKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R+ LE+I G +++GTHALFQ+ +++ L LVI+DEQHRFGV QRL L +K Sbjct: 359 SRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRLMLREKGEKAG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T D+D S I E P GR PI TV++ R E++ R+K Sbjct: 419 FYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRAEIVMRVKNA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 ++E ++AYW+C I+E + ++ + L + +I ++HGRM +K+ VM Sbjct: 479 CVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMR 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FKN LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S C+L+Y Sbjct: 539 FKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGCTASFCVLMY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PPL K S RL VL++++DGF+I+E+DL+ R GE+LG KQ+G+ + +A ++ Sbjct: 599 KPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRVANLMRDRKMI 658 Query: 657 EIARKDAKHILTQDPDLT 674 + AK ++ + PD+ Sbjct: 659 PTVQHYAKSLIQKYPDVA 676 >gi|269798117|ref|YP_003312017.1| ATP-dependent DNA helicase RecG [Veillonella parvula DSM 2008] gi|269094746|gb|ACZ24737.1| ATP-dependent DNA helicase RecG [Veillonella parvula DSM 2008] Length = 680 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 244/662 (36%), Positives = 382/662 (57%), Gaps = 33/662 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L+T +G+G L K+ G N T LL Y P ++ DR +I ++ + Sbjct: 5 LTTIKGIGPGREKQLHKL---GITNVT---SLLTYFPRTYEDRRTMYRIGDLKSGMTGGV 58 Query: 73 TGYISQHSSFQLQKRRP------YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 G + +Q++RP ++++ DGTG + ++ F + + KN + +G++I Sbjct: 59 VGTV-----IAVQEKRPRPRLSILEVVIADGTGPLKIVLFNQGYK--KNFYKKGQRIYAY 111 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184 GK + + M P N D P I +Y+L G+S + + + + Sbjct: 112 GKAEFQYGTMQMNTPQ--MENLGDSGEPDRGIVPIYALADGVSQFVVRSSVRNWFAANHE 169 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LPE + ++ + + S +AF ++H P ++ ++ AR +LAY+EL Q L L+R Sbjct: 170 LPEILPVEVRESHHYMSRYDAFKMMHFPDSSEHYK---EARHQLAYEELFVMQAGLALLR 226 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 + + G + G++ + + N+PFS T Q+ A++DI DM + M R+LQGDVGS Sbjct: 227 SKEQCHRGPKMGPNGELMARCIENLPFSLTGDQQRALEDIRIDMEDERPMQRLLQGDVGS 286 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKT+VA + + A+E G Q +MAP ILA QHYE I+ N I +E++TG+ + + Sbjct: 287 GKTIVATLGLLKAIENGYQGALMAPTEILAAQHYEGIRTVCANLGITIELLTGSTTKKEK 346 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424 E +A G H+IIGTHAL Q+++ ++ L LVI+DEQHRFGV+QR +L QK T PHVL Sbjct: 347 ECIYEGLADGSIHMIIGTHALIQENVNFHNLGLVIIDEQHRFGVEQRARLQQKGTYPHVL 406 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 +MTATPIPRT+ L+ GD+ +S I E P GRKP+KT + + D + ++EG++ Sbjct: 407 IMTATPIPRTMTLSVYGDLAVSLIKEMPPGRKPVKTYAVDSSYKDRLCTFFGKEMAEGRQ 466 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542 Y +CP +EE ++ + ++ E + L E+F + + ++HGRM +K+ VM++F G Sbjct: 467 VYVVCPLVEESEKLDLQAAEELYLELKEYFYKAYEVGLVHGRMKPSEKDEVMNAFHKGEI 526 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 LL++TTVIEVG++V +A+I+ +E AE FGL+QLHQLRGRVGRG S CIL+ SK Sbjct: 527 SLLVSTTVIEVGVNVPNATIMCVEGAERFGLSQLHQLRGRVGRGAYQSYCILVSD---SK 583 Query: 603 N--SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 N S RL +++ +DGF +AE+DL R G++ G+ QSG+P +A +L AR Sbjct: 584 NDVSQERLKLMEQIQDGFELAEQDLLLRGSGQLFGLAQSGLPDLRVANIIKDIEILVEAR 643 Query: 661 KD 662 KD Sbjct: 644 KD 645 >gi|190575687|ref|YP_001973532.1| ATP-dependent DNA helicase RecG [Stenotrophomonas maltophilia K279a] gi|190013609|emb|CAQ47244.1| putative ATP-dependent DNA helicase [Stenotrophomonas maltophilia K279a] Length = 703 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 249/697 (35%), Positives = 383/697 (54%), Gaps = 35/697 (5%) Query: 2 RPSFLNPLFAP-----LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRH 56 R + + P+ +P L+ GVG + +K+ G A DL + P + DR Sbjct: 3 RKAAVTPVLSPSGEASLAMLAGVGPAVA---AKLQARGLAT---LQDLWLHLPLRYEDRT 56 Query: 57 YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILL-----NDGTGEITLLFFYRKTE 111 +I ++ + G + +++ Y+ +L ++G G + L FF+ + + Sbjct: 57 RLTRIEDLRNGVPAQVEGRV-----VAVERGMRYRPMLKVAVEDEGRGTLVLRFFHFRQQ 111 Query: 112 MLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVD 169 + F G ++ G K + + +VHP Y + + D ++ VY G+ Sbjct: 112 QVGQ-FAVGNRLRCFGTPKPGQLGLEIVHPSYQVLGRNDDPELGDRLDPVYPTVEGVGPM 170 Query: 170 LFKKIIVEALSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSP 223 +K+I +AL RLP E + L PS+ A +H P D T P Sbjct: 171 TMRKLIGQALDRLPEESALELLPSGWLDGLGLPSLRSALLTVHRPPPDADLVALAAGTHP 230 Query: 224 ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283 A+ RLA +ELLA ++L R + P+ GK+A+ +L+ +PF+ T +Q K Sbjct: 231 AQRRLAMEELLAHHLSLRRQRIALQAHHAPPLAGPGKLAKALLKQLPFALTGAQARVFKQ 290 Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343 I +D+++ + MLR++QGDVGSGKT+VA +A AVE G Q + AP +LA+QH ++ Sbjct: 291 IREDLARPSPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLNNLRG 350 Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403 + + + + + G + R K +E++A G+A +++GTHAL Q+++ + L L IVDEQ Sbjct: 351 WLEPLGVRIAWLAGKVTGKARAKVMEQVASGEAQVVVGTHALMQEAVVFQDLALAIVDEQ 410 Query: 404 HRFGVQQRLKLTQKA----TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 HRFGV QRL L K + PH L+MTATPIPRTL ++ D+D+S I E P GR P++ Sbjct: 411 HRFGVHQRLALRDKGAGGNSVPHQLVMTATPIPRTLAMSEYADLDVSAIDELPPGRTPVQ 470 Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518 TV + +R E+IER+ + EG++ YW+C IEE +E + + SL + Sbjct: 471 TVALNNDRRPELIERIALACQEGRQVYWVCTLIEESEELDATPAQATYESLQALLPGVRV 530 Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578 ++HGR+ +K + M +FK G LL+ATTVIEVG+DV +AS+++IENAE GLAQLHQ Sbjct: 531 GLVHGRLKAAEKLATMVAFKAGDIDLLVATTVIEVGVDVPNASLMVIENAERLGLAQLHQ 590 Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638 LRGRVGRG +S C+LLY PLS+ + RL ++ T DGF+IAE+DL+ R GE+LG +Q Sbjct: 591 LRGRVGRGSAVSRCVLLYQAPLSQMARERLQTMRETNDGFVIAEKDLELRGPGELLGTRQ 650 Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 +G+ F IA LL A+ +L Q P L Sbjct: 651 TGLAGFRIADLARDAGLLPGVHDLAERLLDQQPTLAD 687 >gi|331649466|ref|ZP_08350552.1| ATP-dependent DNA helicase RecG [Escherichia coli M605] gi|331041964|gb|EGI14108.1| ATP-dependent DNA helicase RecG [Escherichia coli M605] Length = 704 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 380/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 21 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 74 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 75 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 132 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 133 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 190 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 191 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 248 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 249 ALRAGAQRFHAQPLSTNDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 308 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A AV G Q +MAP +LA+QH + + I V + Sbjct: 309 VGSGKTLVAALAALRAVAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLARKQKG 368 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 369 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 428 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 429 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 488 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 489 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMT 548 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 549 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 608 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 609 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 668 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 669 IPEVQRLARHIHERYP 684 >gi|194430068|ref|ZP_03062573.1| ATP-dependent DNA helicase RecG [Escherichia coli B171] gi|260846563|ref|YP_003224341.1| ATP-dependent DNA helicase RecG [Escherichia coli O103:H2 str. 12009] gi|194411895|gb|EDX28212.1| ATP-dependent DNA helicase RecG [Escherichia coli B171] gi|257761710|dbj|BAI33207.1| ATP-dependent DNA helicase RecG [Escherichia coli O103:H2 str. 12009] gi|323160737|gb|EFZ46673.1| ATP-dependent DNA helicase RecG [Escherichia coli E128010] Length = 693 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/676 (37%), Positives = 380/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF T +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKQTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|332997751|gb|EGK17362.1| ATP-dependent DNA helicase RecG [Shigella flexneri K-272] gi|333013286|gb|EGK32658.1| ATP-dependent DNA helicase RecG [Shigella flexneri K-227] Length = 693 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/678 (37%), Positives = 377/678 (55%), Gaps = 32/678 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLPTGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNS------QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-- 183 K M+HP Y Q+ P VY G+ +K+ +AL L Sbjct: 122 GKYGAEMIHPEYRVQGDLSTLELQETLTP----VYPTTEGVKQATLRKLTDQALDLLDTC 177 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIA 239 + E + +L Q ++ EA +H P + D E PA+ RL +ELLA ++ Sbjct: 178 AIEELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLS 235 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 +L +R ++ P++ + K+L +PF PT +Q + +I DM+ M+R++Q Sbjct: 236 MLALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIEHDMALDVPMMRLVQ 295 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 296 GDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQ 355 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 356 KGKARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQ 415 Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R+ Sbjct: 416 QQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVTIPDTRRTDIIDRV 475 Query: 476 K-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533 + ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++V Sbjct: 476 RHACITEGRQAYWVCTLIEESELLEAQAAKATWEELKLALPELNVGLVHGRMKPAEKQAV 535 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+ Sbjct: 536 MASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCV 595 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 LLY PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A Sbjct: 596 LLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQ 655 Query: 654 SLLEIARKDAKHILTQDP 671 +++ ++ A+HI + P Sbjct: 656 AMIPEVQRLARHIHERYP 673 >gi|332304825|ref|YP_004432676.1| ATP-dependent DNA helicase RecG [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172154|gb|AEE21408.1| ATP-dependent DNA helicase RecG [Glaciecola agarilytica 4H-3-7+YE-5] Length = 701 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 251/651 (38%), Positives = 379/651 (58%), Gaps = 26/651 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +GVG K + L K+ DLLF+ P + DR I+++ + Sbjct: 18 PVTQLKGVGSKVAEKLEKL------GLHSVQDLLFHLPHRYEDRTRIYPIADLMPHLHTS 71 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + Q ++R + ++D TG ITL FF+ KN +G I G+++ Sbjct: 72 VEGEVMS-CDVQFGRKRMLIVRMSDSTGTITLRFFHFSAAQ-KNSLEKGTHIRCFGEVRA 129 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLPV--LP 186 K + ++HP Y S D + L E+ VY G+ + + +AL L L Sbjct: 130 GKYGLEIMHPEYKI-ISTDSSVQLAESLTPVYPSTEGVKQVTLRNLTEQALGLLDKGGLA 188 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242 E + D+ Q++ + EA +++H P E PA++RLA +ELLA +++L Sbjct: 189 ELLPNDVYQQQV--GLIEALHLVHRPPPDVTLALLEEGKHPAQQRLALEELLAHHLSVLK 246 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R+Q +++ G I + ++L ++PF T +Q+ I+DI QDM + M+R++QGDV Sbjct: 247 VRQQSQQQKGFAITPSNPLLTQLLDSLPFDLTGAQQRVIQDIQQDMQRPTPMMRLVQGDV 306 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A +A+ AG Q V+MAP +LA+QH + + I V + G + Sbjct: 307 GSGKTLVAAMAALSAISAGYQVVMMAPTELLAEQHMNNFQGWFAPLGIEVGWLAGKLKGK 366 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R + LE +A G+ +++GTHA+FQ+++QY L LVIVDEQHRFGV QRL L +K Sbjct: 367 ARNETLENLASGKLQLLVGTHAVFQEAVQYQSLALVIVDEQHRFGVHQRLALREKGLQQD 426 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH L+MTATPIPRTL +T+ D+D S I E P GR PI TV++P R +V+ER+++ Sbjct: 427 AFPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPITTVVLPETRRVDVVERVRLA 486 Query: 479 LSE-GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 E G++ YW+C IEE + ++ E +L + ++HGR+ +K+ +M+ Sbjct: 487 TVEHGRQTYWVCTLIEESEVLQSQAAEETAIALATALPELKVGLVHGRLKADEKQRLMEQ 546 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+L+Y Sbjct: 547 FKAGEMDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVESHCVLMY 606 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 PL+K + RL+VL+ + DGF IA++DL+ R GE+LG KQ+G+ IA Sbjct: 607 QSPLTKVAAKRLAVLRESHDGFYIAQQDLEIRGPGELLGTKQTGLADLRIA 657 >gi|251793133|ref|YP_003007861.1| ATP-dependent DNA helicase RecG [Aggregatibacter aphrophilus NJ8700] gi|247534528|gb|ACS97774.1| ATP-dependent DNA helicase RecG [Aggregatibacter aphrophilus NJ8700] Length = 693 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 259/677 (38%), Positives = 382/677 (56%), Gaps = 30/677 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+ GVG + L K+ G N DLLF+ P + DR I ++ E+ T Sbjct: 10 PLTAISGVGAAIAEKLGKL---GILN---LQDLLFHLPLRYEDRTRITPIIDLRPEQYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G + Q + Q +R L+DG+ ++ L FF M KN G ++ G++++ Sbjct: 64 IEGVV-QSTEVQFGRRPMLMTYLSDGSAKLALRFFNFNAGM-KNSLQLGARVKAFGEVRR 121 Query: 132 LKNRIIMVHPHY-IFHNSQDVNFPLI-----EAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 + M HP Y I H+ N PL+ +Y GL +K+I +AL L Sbjct: 122 GRFMAEMHHPEYQIIHD----NKPLVLSETLTPIYPTTEGLKQTSLRKLIAQALQVLEKT 177 Query: 186 PEWIEKDLLQKKSFP-SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIAL 240 P E ++ P + A +HNP E PA++RL ++ELLA +A+ Sbjct: 178 P-LAELWPVEFNPHPFDLKSAIQFLHNPPPDVSLETLEEGKHPAQQRLIFEELLAYNLAM 236 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 +R ++ P+ + + Q+ L +PF+PT +Q ++I +D+ Q M+R++QG Sbjct: 237 QKVRLGIQENFAEPLRAQSDLKQRFLAQLPFTPTHAQLRVTQEIEEDLQQNYPMMRLVQG 296 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKTLVA +A A++ G Q V+MAP ILA+QH +++ + I V + G + Sbjct: 297 DVGSGKTLVAALAALTAIDNGKQVVLMAPTEILAEQHATNFRRWFEPLGIDVGWLAGKVK 356 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 R LERI +G+ +++GTHALFQD ++++ L LVIVDEQHRFGV QRL L +K Sbjct: 357 GKQRTVELERIKNGRVQMVVGTHALFQDEVKFHNLSLVIVDEQHRFGVHQRLMLREKGNQ 416 Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PH L+MTATPIPRTL +T D+D S I E P GR PI T+ I +R +IER+ Sbjct: 417 AGVYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTIAISEDRRANIIERVN 476 Query: 477 VVLSEGKK-AYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 +E K+ AYW+C I+E + ++ L + I ++HGRM +K+ +M Sbjct: 477 RACTEEKRQAYWVCTLIDESEVLEAQAAEAVAEDLRKILPHLRIGLVHGRMKPAEKQEIM 536 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 FK+ LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S C+L Sbjct: 537 QEFKDANLDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGTTASFCVL 596 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 +Y PPL K S RL V+++T+DGF+I+E+DL+ R GE+LG KQ+G+ +F +A Sbjct: 597 MYKPPLGKISQKRLQVMRDTQDGFVISEKDLEIRGPGEVLGTKQTGITEFKVANLMRDRK 656 Query: 655 LLEIARKDAKHILTQDP 671 +L + AK ++ + P Sbjct: 657 MLPTVQFYAKQLVQKYP 673 >gi|253700922|ref|YP_003022111.1| ATP-dependent DNA helicase RecG [Geobacter sp. M21] gi|251775772|gb|ACT18353.1| ATP-dependent DNA helicase RecG [Geobacter sp. M21] Length = 772 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 258/699 (36%), Positives = 394/699 (56%), Gaps = 40/699 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI---- 64 L P+ + +GVG K + LSK N E D L+ P+ + DR KI+++ Sbjct: 72 LKTPMQSIKGVGPKLAATLSK--KGLNTVE----DALYLLPNRYEDRRELKKIAQLRPGN 125 Query: 65 SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124 SE T+ +Q + RR ++ ++ D TG + L +F+ L GRK Sbjct: 126 SEAFFATVVSAGAQTTK---GGRRYFEAIVKDETGSLPLKWFHFHPNFLAKQLVPGRKGI 182 Query: 125 VTGKIKKLKNRIIMVHPHYIFH-NSQDV---------NFPLIEAVYSLPTGLSVDLFKKI 174 G + + + M HP + +D+ NF I VY L G+S + ++I Sbjct: 183 FIGDVAQFGFQREMHHPEVEWAVEGEDLSQVMARDPDNFGSILPVYPLTEGVSQKVMRRI 242 Query: 175 IVEALSRLP-----VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPAR 225 + +A+ R LP+ +LL++ + A H P + D S A Sbjct: 243 MRDAVQRYSRYVKGALPD----ELLRRHQLLPLPVALRDAHLPAQDSDLSALNSGRSAAH 298 Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285 LA+DEL Q+ L L ++ E GI V + +++L+ +PFS T +Q+ + +I Sbjct: 299 RSLAFDELFFLQMGLALKKRGIAVEDGISFQVTHRYTKELLKLLPFSLTAAQKRVLSEIK 358 Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345 +DM + M R++QGDVG GKTLVAL+A VE Q IMAP +LA+QHY I Y Sbjct: 359 EDMMSPHPMHRLVQGDVGCGKTLVALMAALVCVENDYQVAIMAPTELLAEQHYLNIHGYC 418 Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405 +N I V ++T ++ + L++IA G I++GTHA+ Q+ +++ +L L I+DEQHR Sbjct: 419 ENLGINVALLTASV--KGKGDTLDKIASGATQIVVGTHAVIQEKVEFNRLGLGIIDEQHR 476 Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465 FGV QR L +K P +L+MTATPIPRTL +T GD+ +S I E P GR PI+T ++ Sbjct: 477 FGVVQRALLKKKGANPDILVMTATPIPRTLSMTVFGDLSLSVIDELPPGRTPIETRMVRE 536 Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHG 523 +R EV ++ ++G++AY I P +EE ++S+ ++ V+ L + +A++HG Sbjct: 537 SRRKEVYALVREEAAKGRQAYVIYPLVEETEKSDLKAAVQMAEHLAQEVFPDLRVAVLHG 596 Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583 RM +KE+VM FK G+ +L+ATTVIEVGIDV +A++++IE+AE FGL+QLHQLRGRV Sbjct: 597 RMPAAEKEAVMKEFKAGSTDILVATTVIEVGIDVPNATVMVIEHAERFGLSQLHQLRGRV 656 Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643 GRG E S CILL LS++ RL V+ + DGF+IAE DL+ R G+ LG +Q+G+P+ Sbjct: 657 GRGSERSRCILLAGDKLSEDGQKRLEVMVQSSDGFVIAEADLQIRGPGDFLGTRQAGLPE 716 Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682 +A +LE ARKDA ++ +DP+LT+ + +R Sbjct: 717 LRVADILRDGGVLEQARKDAFALVERDPELTAPGHERLR 755 >gi|227113295|ref|ZP_03826951.1| ATP-dependent DNA helicase RecG [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 693 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 255/692 (36%), Positives = 390/692 (56%), Gaps = 38/692 (5%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 M+ LN PLST GVG + L+++ ET DLL + P + DR + Sbjct: 1 MKGRLLN--TQPLSTLTGVGASQAAKLARL-----GLET-VQDLLLHLPLRYEDRTHLYP 52 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 I ++ T+ G I + + RR ++DG+G +T+ FF M KN G Sbjct: 53 IGDLLPGMYATVEGEILR-NDITFGSRRMLTCQISDGSGMLTMRFFNFSAAM-KNSLAPG 110 Query: 121 RKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEA 178 +++T G+IK+ K ++HP Y + +S V + VY G+ +K+ +A Sbjct: 111 QRVTAYGEIKRGKIGAEIIHPEYRVQGDSTQVELQESLTPVYPSTEGVRQATLRKLTDQA 170 Query: 179 LSRL------PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS------PARE 226 L+ L +LPE + + L+ S+ +A +H P D + + PA++ Sbjct: 171 LALLDANHIDELLPESLSRSLI------SLPDALRTLHRP--PPDMQLSELEHGKHPAQQ 222 Query: 227 RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQ 286 RL +ELLA +++L +R ++ P+ + + Q++L +PF PT++QE + +I Sbjct: 223 RLIMEELLAHNLSMLAVRAGEQRHKASPLQAQDGLKQQLLAALPFKPTQAQERVVAEIEA 282 Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346 DM++ M+R++QGDVGSGKTLVA +A A+ G Q +MAP +LA+QH +++ + Sbjct: 283 DMAKDFPMMRLVQGDVGSGKTLVAALAALRAIANGKQVALMAPTELLAEQHAHNFRQWFE 342 Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 + V + G R+ + IA GQ +++GTHA+FQ +Q+ L LVI+DEQHRF Sbjct: 343 PLGLEVGWLAGKQKGKARQAQQDAIASGQVSMVVGTHAIFQQQVQFNGLALVIIDEQHRF 402 Query: 407 GVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462 GV QRL L +K H L+MTATPIPRTL +T+ D+D S I E P GR P+ TV Sbjct: 403 GVHQRLALWEKGEEQGFYAHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVA 462 Query: 463 IPINRIDEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAI 520 IP +R ++IER+ EG++AYW+C IEE ++ L + + + Sbjct: 463 IPDSRRSDIIERVNNACQQEGRQAYWVCTLIEESDLLEAQAAEATSEELKAALPNLKVGL 522 Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580 +HGRM +K++VM +FK G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLR Sbjct: 523 VHGRMKAQEKQAVMQAFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLR 582 Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 GRVGRG S C+LLY P+SK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G Sbjct: 583 GRVGRGAVASHCVLLYKTPMSKTAQKRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTG 642 Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 +F +A L+ ++ A+H+ P+ Sbjct: 643 NAEFKVADLLRDQELIPQVQRVARHLHEHYPE 674 >gi|255022098|ref|ZP_05294102.1| ATP-dependent DNA helicase RecG [Acidithiobacillus caldus ATCC 51756] gi|254968456|gb|EET26014.1| ATP-dependent DNA helicase RecG [Acidithiobacillus caldus ATCC 51756] Length = 662 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 237/640 (37%), Positives = 366/640 (57%), Gaps = 6/640 (0%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 R DLLF+ PS + DR + + + + G I Q +R + ++L D Sbjct: 11 VRVEDLLFHLPSRYQDRRQLHAMGRLQAGQEAAVLGEILDIRP-QPGRRPQWCVVLGDDR 69 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIE 157 G + L F+ ++++ + GR++ G+++ N + MVHP + ++ D P + Sbjct: 70 GAVLQLRFFHWVGVMRSQWRPGRRLWCFGEVRVGGNGLEMVHPEWQLADTPDFCLPDRLT 129 Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 Y G++ ++ AL+ L + L +PS+ + +H A Sbjct: 130 PFYPSVAGITQAHWRAWTDAALALSDELLD--PLLHLLPAGWPSLKASLYRLHRSADAVP 187 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 + PAR+RLA DELLA +AL R+ + + G +++ + +PF PT +Q Sbjct: 188 GD-ADPARQRLALDELLAHYLALREERRLRRCLPAPVLAAPGAYWERLRQTLPFVPTAAQ 246 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 I +I D+ M R++QGDVGSGKTLVA+ A+ AVEAG Q +MAP ILA+Q Sbjct: 247 LRVIAEIRADLGATAPMRRLVQGDVGSGKTLVAVAALLQAVEAGYQVALMAPTEILARQL 306 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 ++ ++ + QN + ++ G+ RR L +A G+ I+ GT ALFQ+ + Y +L L Sbjct: 307 HQRLEDWLQNLGLRAGLLLGSCSAKERRPLLRALADGELAIVCGTQALFQEGVDYARLGL 366 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI+DEQHRFGV+QR +L K + PH+L++TATPIPRTL +T D+D+S I P GR+P Sbjct: 367 VIIDEQHRFGVEQRRRLMAKGSMPHLLILTATPIPRTLAMTLHADLDLSVIDSLPPGRQP 426 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516 + TV++P R DE+I R++ VL+EG++ YW+C IE + ++ + + L Sbjct: 427 VATVVLPDTRRDELIARMRNVLAEGRQIYWVCQLIENSELLELQAAEDSYTELCRALPEV 486 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 I ++HGR+ +K+ M F G ++L+ATTVIEVG+DV AS++IIE+AE GL+QL Sbjct: 487 RIGLVHGRLPAEEKQRRMRDFVGGATQILVATTVIEVGVDVPAASLMIIEHAERLGLSQL 546 Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636 HQLRGRVGRG S+CILLY PPLS + RL V++++ DGF IA +DL+ R GE+LG+ Sbjct: 547 HQLRGRVGRGATQSACILLYRPPLSARARQRLQVIRSSHDGFFIARKDLEMRGPGELLGV 606 Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676 +QSG +A P ++LLEI +++L P+ V Sbjct: 607 RQSGERALRVADPLRDEALLEIVPDLGENLLRTQPEAAGV 646 >gi|254788371|ref|YP_003075800.1| ATP-dependent DNA helicase RecG [Teredinibacter turnerae T7901] gi|237685871|gb|ACR13135.1| ATP-dependent DNA helicase RecG [Teredinibacter turnerae T7901] Length = 677 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 238/634 (37%), Positives = 368/634 (58%), Gaps = 30/634 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLLF+ P ++DR + ++ V I G + + + ++R + L D +G+ T Sbjct: 19 DLLFHLPLRYLDRTRITPLGQLQLNTSVMIQGAVLR-TQVTFGRKRSLLVQLEDESGQ-T 76 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-----LIE 157 L FY T K+ G + G+ + + + HP Y + D P + Sbjct: 77 CLRFYHFTAYQKDRLEPGTLLRCYGEPRLGSSGLEFYHPEY---DVIDAAAPPPLDNTLT 133 Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215 VY L G+S + +I + L+++ P E++ +D+ Q+ + S++EA +H P + Sbjct: 134 PVYGLTEGVSQQRMRSVIEQVLAKIKQSPPDEYLPRDVNQRFACESLSEALLCVHQPPHS 193 Query: 216 KD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271 E P+++RLAY+ELLA + + ++ + ++ + ++ L +PF Sbjct: 194 VQVKSLLEGHHPSQQRLAYEELLAHFLVKRKLHAIAARQKAPRLTLDTSLQERFLAQLPF 253 Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331 + T +Q+ ++I D++ + MLR++QGDVGSGKTLVA +A A +++G Q ++AP Sbjct: 254 ALTGAQQRVCREIFNDLANGSPMLRMVQGDVGSGKTLVAALAALAGIDSGFQVAVVAPTE 313 Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391 ILA+QH+ + VE + G + A RR ALERIA G+A +I+GTHALFQ+ + Sbjct: 314 ILAEQHFRNFDGWLSGLGFQVEWLVGKLTVAKRRNALERIASGEAQVIVGTHALFQEGVN 373 Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISK 447 + +L L IVDEQHRFGV QRL L +K A PH L+MTATPIPRTL + + ++D S Sbjct: 374 FARLGLSIVDEQHRFGVDQRLSL-RKTNADDQLPHQLVMTATPIPRTLAMAAYAELDYSV 432 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 I E P GR P+ TV+I R +V+ER++ +EG++ YW+C +EE + + + Sbjct: 433 IDELPPGRTPVNTVLISQRRRAQVVERIRAACAEGRQVYWVCTLVEESESLAAANAEQTA 492 Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 + L E +I ++HGR+ +KE+VM +FK +LL+ATTVIEVG+DV +AS++IIE Sbjct: 493 SELREALADIAIGLVHGRLKATEKETVMAAFKAAELQLLVATTVIEVGVDVPNASLMIIE 552 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626 N E GLAQLHQLRGRVGRG S C+LLY LS+ + RL VL+ T DGFL+AE+DL+ Sbjct: 553 NPERLGLAQLHQLRGRVGRGTTASHCVLLYGDKLSEQARQRLQVLRETNDGFLVAEKDLQ 612 Query: 627 QRKEGEILGIKQSGMPKFLIAQ--------PELH 652 R GE+LG +Q+G ++ +A PE+H Sbjct: 613 LRGPGEVLGTRQTGDMQYRVADMVRDEHLLPEIH 646 >gi|159903548|ref|YP_001550892.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str. MIT 9211] gi|159888724|gb|ABX08938.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str. MIT 9211] Length = 815 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 249/695 (35%), Positives = 394/695 (56%), Gaps = 41/695 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L + LST +G+G K L+ + DLL ++P ++D +IS + Sbjct: 116 LDSTLSTVKGIGSKTIELLASL------GIFTIRDLLVHYPRDYVDYSQLKRISSLEAGE 169 Query: 69 IVTITGYISQHSSFQLQKRRP----YKILLNDGTGEITLLFFY------RKTEMLKNV-- 116 TI I + + F R P ++L+ D TG I L F+ + ++K V Sbjct: 170 TATIVASIRRTNYFT-SPRNPNLSVLELLIQDSTGRIKLTKFFAGRRFSNRGYLMKQVSQ 228 Query: 117 FFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-----LIEAVYSLPTGLSVDLF 171 + G + V+G +K+ + P +Q + + +Y L GL+ Sbjct: 229 YPTGSTVAVSGLVKEGSYGKCFIDPIIEVLENQGTSIKSKSIGRLIPIYPLTEGLTAVRI 288 Query: 172 KKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231 +++ L + + ++ + S SI A N IH P + E + AR R+ +D Sbjct: 289 RRVFDLVLPFAAFWKDPLPQERISHHSLMSIQNAMNQIHQP---NNLESLNAARRRIVFD 345 Query: 232 ELLAGQIALLLMRKQFKKEIGI---PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288 E L Q+ALL R F+K+ +N + + +PFS T Q+ + +I D+ Sbjct: 346 EFLCLQLALLRKRNLFRKKPAPQLKKVNQINSLTSQFYSLLPFSFTNEQKRVLHEIESDL 405 Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348 M R+LQGDVGSGKT+VA+ A+ AV++G Q +MAP +LAQQHY+ + K+ Sbjct: 406 ESSEPMARLLQGDVGSGKTVVAIAALLYAVDSGWQGALMAPTEVLAQQHYKNLCKWLPQL 465 Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408 + V++ITG+ P + R++ L+ ++ G +II+GTHAL +DS+ + +L LV+VDEQHRFGV Sbjct: 466 HVTVDLITGSTPNSRRKQILDDLSTGGVNIIVGTHALIEDSVSFSRLGLVVVDEQHRFGV 525 Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468 QR L +K PH+L MTATPIPRTL L+ GD+D+S+I E P GR+ IKT ++ ++ Sbjct: 526 YQRDLLLRKGLQPHLLTMTATPIPRTLALSIHGDLDVSQINEMPPGREKIKTSMLQFSQR 585 Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF----NSLHEHFTSSIAIIHGR 524 ++V + ++ + + + Y++ P +EE ++ RS V+ + N L + F ++ ++HGR Sbjct: 586 NKVFDLIRAHIKKRHQVYFVLPLVEESEKIELRSAVDVYHELSNDLFQEF--NVGLLHGR 643 Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584 MS +DK S ++SF +G +L++TTVIEVG+DV +A++++I++A+ FGLAQLHQLRGRVG Sbjct: 644 MSSLDKNSTINSFVSGEVDILVSTTVIEVGVDVPNATLMVIDHADRFGLAQLHQLRGRVG 703 Query: 585 RGEEISSCILLYHPPLSKNSYTR--LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642 RG S CIL+ KNS +R L L + DGF I+E DL+ R G++LG +QSG+P Sbjct: 704 RGASFSECILIDS---GKNSDSRKKLEYLVGSTDGFEISEIDLRMRGPGQVLGTRQSGLP 760 Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677 F +A +LE+ARK+A +IL DP+L S + Sbjct: 761 DFALANLVNDSHVLELARKEALYILNSDPELNSYK 795 >gi|311277428|ref|YP_003939659.1| ATP-dependent DNA helicase RecG [Enterobacter cloacae SCF1] gi|308746623|gb|ADO46375.1| ATP-dependent DNA helicase RecG [Enterobacter cloacae SCF1] Length = 693 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/676 (37%), Positives = 379/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS GVG + L+KI G N DLL + P + DR + I+++ T Sbjct: 10 PLSALTGVGAAQTNKLAKI---GLHN---VQDLLLHLPLRYEDRTHLYTINDLLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DGTG +T+ FF M KN G+++ G+ ++ Sbjct: 64 VEGEVL-NCNITFGGRRMMTCQISDGTGILTMRFFNFNAAM-KNSLAAGKRVLAYGEARR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPALQETLTPVYPTTEGVRQATLRKLTDQALDLLETCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDELLAGQIALL 241 E + +L Q S+ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPSLQLSDLESGQHPAQRRLIMEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + Q +L +PF PT +Q + +I DM+Q M+R++QGD Sbjct: 238 ALRAGAQRYHAQPLSPRDNLKQALLDALPFRPTGAQARVVGEIEHDMAQDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGNQVALMAPTELLAEQHANNFRAWFAPLGVEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV I R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIADTRRSDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +EG++AYW+C IEE + ++ + L +I ++HGRM +K++VM Sbjct: 478 ACTAEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK G LLIATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 GFKQGELHLLIATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKSPLSKTAQMRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAI 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPDVQRIARHIHEKYP 673 >gi|307244280|ref|ZP_07526395.1| ATP-dependent DNA helicase RecG [Peptostreptococcus stomatis DSM 17678] gi|306492430|gb|EFM64468.1| ATP-dependent DNA helicase RecG [Peptostreptococcus stomatis DSM 17678] Length = 685 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 247/649 (38%), Positives = 374/649 (57%), Gaps = 19/649 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 D L+Y P F DR + KI ++ E + I + +S + R + ++D TG+ Sbjct: 33 DALYYFPRQFEDRSRQKKIFQLEEGEKTGVRVKIDRINSVNRRGLRITEFYVSDDTGKAK 92 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162 L+FF + L+N F G + G +KK I +H I ++ D N +I VYSL Sbjct: 93 LVFFNKA--YLRNTFRVGDIVKAFGSVKKNLGPITELHNCEIEYDKIDKNTGIIVPVYSL 150 Query: 163 PTGLS----VDLFKKIIVEA-LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 G+ + + + I + +S LP+WI + K + + A +H P K Sbjct: 151 TAGVGNKEVMGMIRNIFESSDISIDEYLPKWI----VDKYNLCGVDFAIRNMHFPEKK-- 204 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 E A RL ++ELL Q+ L ++ K GI + KI N+PF T++Q Sbjct: 205 -ENVKIAMYRLIFEELLFLQLGLFAVKGNNKVSKGIKFKRHEDM-DKIEENLPFRLTRAQ 262 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + A DI+ DM+ M R++QGDVGSGKT+VA +A+A V G Q MAP ILA+QH Sbjct: 263 KKAYDDIMADMTSDRIMNRLVQGDVGSGKTVVAQLALANCVLNGYQGAYMAPTEILAKQH 322 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 E K++ NT I VE++TG+ + + L+ +A GQ I+IGTHAL +D + + L L Sbjct: 323 MESFKEFFDNTGIRVEVLTGSSTRKEASEILKDLASGQIDILIGTHALIEDRVDFANLGL 382 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI DEQHRFGV QR +LT K+ P VL+MTATPIPRTL L GD+DIS I E P GRKP Sbjct: 383 VITDEQHRFGVNQRGRLTSKSENPDVLVMTATPIPRTLALILYGDLDISIIDELPPGRKP 442 Query: 458 IKTVIIPINRIDE-VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 I+T+ I + + + +++ + +G++ Y +CP +EE + + +S E ++ L F Sbjct: 443 IETLAIEKRKRESYYMSKVRSEIEKGRQVYVVCPLVEESETLDLKSASEVYDELRGDFFK 502 Query: 517 S--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + ++HG+M +K+ VM++FKN +L++TTVIEVG++V +AS++IIENAE FGLA Sbjct: 503 DLRVGLLHGKMKASEKDQVMEAFKNHELDILVSTTVIEVGVNVPNASLMIIENAERFGLA 562 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG E S C L+Y ++ R+++++ T DGF I+E+DL+ R G+ Sbjct: 563 QLHQLRGRVGRGSEKSYCTLIYGSK-TEICRHRMAIMEETNDGFKISEKDLELRGPGDFF 621 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683 G +Q G+P+ +A H +L + +K+A+ I +DP L + +R+ Sbjct: 622 GTRQHGLPELRVANLFKHMKILRLVQKEAREIYAEDPSLRLKENEGLRL 670 >gi|183597036|ref|ZP_02958529.1| hypothetical protein PROSTU_00271 [Providencia stuartii ATCC 25827] gi|188023695|gb|EDU61735.1| hypothetical protein PROSTU_00271 [Providencia stuartii ATCC 25827] Length = 693 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 258/680 (37%), Positives = 385/680 (56%), Gaps = 36/680 (5%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L+T GVG S LSKI N + DLL + P + D +I ++ TI Sbjct: 11 LTTLHGVGASQSEKLSKI----GLNTVQ--DLLLHLPLRYEDHTRLYQIRDLLPGTTATI 64 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G + Q + ++R L+ DGTG +TL FF M KN EGR + G++++ Sbjct: 65 VGEVLQ-TKVVFGRKRMMTCLITDGTGNLTLRFFNFSAAM-KNSLAEGRHVIAYGEVRRG 122 Query: 133 KNRIIMVHPHYIFHNSQDV-NFPLIE---AVYSLPTGLSVDLFKKIIVEALSRLP----- 183 ++HP Y SQD N L E VY G+ +K+I +AL L Sbjct: 123 NTGPEIIHPEYKV--SQDTSNISLQENLTPVYPTTEGVRQATLRKLIEQALKLLEGGQIK 180 Query: 184 -VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQI 238 +LPE + + L+ S+ +A ++H P + PA++RL +ELLA + Sbjct: 181 ELLPEELSRGLI------SLPDAIRLLHTPPPDVALSELEKGQHPAQKRLILEELLAHHL 234 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 ++L +R ++ P+ + G++ + L ++PF+PT +Q + +I QD+ + M+R++ Sbjct: 235 SMLAIRAGHQRLYAQPMVITGQLKSQFLASLPFTPTHAQIRVVGEIEQDLIKDAPMMRLI 294 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKTLVA +A +A+E G Q +MAP ILA+QH K + + I V + G Sbjct: 295 QGDVGSGKTLVAALAALSAIENGKQVALMAPTEILAEQHANNFKLWFEPLGINVGWLAGK 354 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R + E IA G+ +++GTHALFQ+ + + L LVI+DEQHRFGV QRL L +K Sbjct: 355 QKGKAREQQQEAIAKGEVSMVVGTHALFQEHVTFKALGLVIIDEQHRFGVHQRLALREKG 414 Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++IER Sbjct: 415 EQQGFHPHQLIMTATPIPRTLAMTAYADMDTSIIDELPPGRTPVTTVAIPDTRRKDIIER 474 Query: 475 LK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532 ++ + EG++AYW+C I++ ++ + L + ++HGRM +K+S Sbjct: 475 VRQACIDEGRQAYWVCTLIDDSDVLEAQAAQATSDELALALPELKVGLVHGRMKPAEKQS 534 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +M +FKN +LL+ATTVIEVG+DV +AS++II+N E GLAQLHQLRGRVGRG S C Sbjct: 535 IMAAFKNNEIQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAVASHC 594 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +LLY PL+ + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G F +A Sbjct: 595 VLLYKTPLTHTAKQRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNVDFKVADLLRD 654 Query: 653 DSLLEIARKDAKHILTQDPD 672 +L ++ A+HI P+ Sbjct: 655 QYMLPEVQRIARHIQQNYPE 674 >gi|152998896|ref|YP_001364577.1| ATP-dependent DNA helicase RecG [Shewanella baltica OS185] gi|151363514|gb|ABS06514.1| ATP-dependent DNA helicase RecG [Shewanella baltica OS185] Length = 696 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 250/680 (36%), Positives = 387/680 (56%), Gaps = 30/680 (4%) Query: 10 FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69 P++ +GV KK + L+K+ T DLLF+ P + DR I+ + Sbjct: 11 LVPITDLKGVAKKVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALMPGSY 64 Query: 70 VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 TI I S Q+ + R ++ N D TG ++L FF +N G I G Sbjct: 65 GTIEAEIQ---STQIIQGRKRMLVCNVRDDTGSLSLRFFNFSVAQ-RNAMQNGLMIRAYG 120 Query: 128 KIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 ++++ ++ +VHP Y + + +DV+ + +Y GL + K+ +AL +L Sbjct: 121 EVRRGGHQAEIVHPEYKVVYPGEDVHLSDTLTPIYPTTEGLKQASWLKLTEQALV---LL 177 Query: 186 PEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAK---DFEWTS-PARERLAYDELLAGQI 238 + +LL + P S+ +A +H P D E PA++RL +ELLA + Sbjct: 178 EDGGLTELLPPQLQPNNISLKQALQTLHRPPAGISQFDLELGQHPAQQRLVQEELLAHNL 237 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 ++L +R++ + + + G++ L +PF PT +Q+ + DI +D+ + + M+R++ Sbjct: 238 SMLRLRQRSNLDAAVTMQATGQLLNPFLAALPFKPTGAQQRVVADIGKDLEKPHPMMRLV 297 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKTLVA +A A+E G Q +MAP +LA+QH + + + V + G Sbjct: 298 QGDVGSGKTLVAAMAALQAIENGYQVAMMAPTELLAEQHATNFAAWFEPLGLKVGWLAGK 357 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + R ++L I G A ++IGTHA+FQ + + KL L+I+DEQHRFGV QRL L +K Sbjct: 358 LKGKARTQSLADIESGAAQMVIGTHAIFQQHVVFNKLALIIIDEQHRFGVHQRLGLREKG 417 Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 + PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV I +R +EV+ER Sbjct: 418 VSQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIADSRRNEVLER 477 Query: 475 LK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532 ++ V+++ ++AYW+C IEE + ++ + L +I ++HGR+ +K+ Sbjct: 478 VRNAVITDKRQAYWVCTLIEESEVLECQAAEDTAEELRLALPELNIGLVHGRLKSAEKQQ 537 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +M FK G LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C Sbjct: 538 IMADFKAGIIHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAIASHC 597 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +LLY PLS + RLSVL+ + DGF+IA++DL+ R GE+LG KQ+G+ + IA Sbjct: 598 VLLYKAPLSHTATQRLSVLRQSNDGFIIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRD 657 Query: 653 DSLLEIARKDAKHILTQDPD 672 +L+ +K A H++ Q P+ Sbjct: 658 QALIPHIQKLANHVMAQAPE 677 >gi|290502|gb|AAA62005.1| DNA recombinase [Escherichia coli] Length = 693 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 255/676 (37%), Positives = 378/676 (55%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLAAGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I P GR P+ TV IP R ++I+R+ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDXXPPGRTPVTTVAIPDTRRTDIIDRVHH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL V +++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVXRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|113968698|ref|YP_732491.1| ATP-dependent DNA helicase RecG [Shewanella sp. MR-4] gi|113883382|gb|ABI37434.1| ATP-dependent DNA helicase RecG [Shewanella sp. MR-4] Length = 696 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 254/679 (37%), Positives = 391/679 (57%), Gaps = 28/679 (4%) Query: 10 FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69 P++ +GV K+ + L+K+ T DLLF+ P + DR I+ + Sbjct: 11 LVPITDLKGVAKRVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALMPGNY 64 Query: 70 VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 TI I S Q+ + R ++ N D TG ++L FF +N G I G Sbjct: 65 GTIEAEIQ---STQIIQGRKRMLVCNVRDNTGSMSLRFFNFSMAQ-RNAMQNGLMIRAYG 120 Query: 128 KIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLP-- 183 +I++ ++ +VHP Y I + +D++ + +Y GL + K+ +AL L Sbjct: 121 EIRRGNHQAEIVHPEYKIVYPGEDIHLSDTLTPIYPTTEGLKQASWIKLTEQALELLEDG 180 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK---DFEWTS-PARERLAYDELLAGQIA 239 L E + +L Q S S+ +A +H P D E PA++RL +ELLA ++ Sbjct: 181 GLTELLPTNL-QPNSM-SLKQALQTLHRPHAGISQFDLELGQHPAQQRLVQEELLAHNLS 238 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 +L +R++ + + + G++ L ++PF PT +Q+ + +I +D+ Q + M+R++Q Sbjct: 239 MLRLRQRSNLDAAVTMLASGQLLNPFLASLPFKPTGAQQRVVAEIGKDLEQPHPMMRLVQ 298 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKTLVA +A A+E G Q +MAP +LA+QH + + + V + G + Sbjct: 299 GDVGSGKTLVAALAALQAIENGYQVAMMAPTELLAEQHAANFAAWFEPLGLKVGWLAGKL 358 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R ++L I G A ++IGTHA+FQ + + KL L+I+DEQHRFGV QR+ L +K Sbjct: 359 KGKARAQSLADIESGDAQMVIGTHAIFQQQVTFNKLALIIIDEQHRFGVHQRMGLREKGI 418 Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP +R +EV+ER+ Sbjct: 419 NQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDSRRNEVLERV 478 Query: 476 K-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533 + V+++ ++AYW+C IEE + ++ + L + SI ++HGRM +K+ + Sbjct: 479 RNSVVTDKRQAYWVCTLIEESEVLECQAAEDTAEELRQALPELSIGLVHGRMKSAEKQKI 538 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M FK GT LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C+ Sbjct: 539 MADFKAGTIHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVASHCV 598 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 LLY PLS+ + RL+VL+ + DGF+IA++DL+ R GE+LG KQ+G+ + IA Sbjct: 599 LLYKAPLSQTASQRLNVLRQSNDGFVIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRDQ 658 Query: 654 SLLEIARKDAKHILTQDPD 672 +L+ +K A H++ Q P+ Sbjct: 659 ALIPHIQKLASHVMAQAPE 677 >gi|22298277|ref|NP_681524.1| DNA recombinase [Thermosynechococcus elongatus BP-1] gi|22294456|dbj|BAC08286.1| DNA recombinase [Thermosynechococcus elongatus BP-1] Length = 804 Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust. Identities = 244/692 (35%), Positives = 393/692 (56%), Gaps = 33/692 (4%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFI--DLLFYHPSSFIDRHYRPKISEI 64 PL L T G+G++ + A + DL++Y P ID + I ++ Sbjct: 98 RPLDQGLKTLHGIGEQLRCVVGDRTAAQLAKLGLYTVADLIYYFPRDHIDYARQVPIRQL 157 Query: 65 SEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGR 121 VT+ G + + F + IL L D TG+I L FY + + E + Sbjct: 158 QAGETVTLVGQVRRCKCFTSPRNAKLTILEIILQDRTGQIRLTRFYAGARYAQRGWQEQQ 217 Query: 122 K--------ITVTGKIKKLK--------NRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG 165 K + +G +K+ K ++ HP + + I +Y L G Sbjct: 218 KRLYAPQTLVAASGLVKQTKYGLTLEEPELEVLEHPGAEIDS---LTIGRIVPIYPLTEG 274 Query: 166 LSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR 225 +S D+ ++ + L + P+ + + L Q + A IH P D S AR Sbjct: 275 VSPDVIRRAVARVLPLVQGYPDPLPQALCQHHQLIPLDTALRYIHFP---PDQTQLSLAR 331 Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285 RL +DE Q+ LL R+Q ++++ +P+ +G++ ++ + +PF T +Q+ + +IL Sbjct: 332 RRLIFDEFFYLQLGLLQRRRQQQQQVSVPLKPQGELIEQFYQRLPFQLTGAQQRVVAEIL 391 Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345 D+ + M R+LQGDVGSGKT+VA+IA+ AAV++G Q +MAP +LA+QHY + ++ Sbjct: 392 ADLERPIPMNRLLQGDVGSGKTVVAVIALLAAVQSGYQGALMAPTEVLAEQHYRKLFEWL 451 Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405 + VE++TG++ A RR+ L+++A G+ +++GTHAL Q+ +++ +L LV++DEQHR Sbjct: 452 TPLHVPVELLTGSVRTAKRRQILDQLATGELPVLVGTHALIQEGVRFQRLGLVVIDEQHR 511 Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465 FGV QR KL K PHVL MTATPIPRTL LT GD+++S+I E P GR+PI+T I + Sbjct: 512 FGVAQRAKLQAKGVLPHVLTMTATPIPRTLALTLHGDLEVSQIDELPPGRRPIQTTI--L 569 Query: 466 NRIDEVI--ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAII 521 R D + ++ +++G++AY I P +EE ++ + +S + L + + ++ Sbjct: 570 GRGDRCCAYDLIRREVAQGRQAYIILPLVEESEKLDLKSAIAEHQRLQTEIFPNFRVGLL 629 Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581 HGRM+ +K++ + +F G +L+ATTV+EVG+DV +A++++IE+AE FGL+QLHQLRG Sbjct: 630 HGRMASSEKDATIQAFAQGELDILVATTVVEVGVDVPNATVMLIEHAERFGLSQLHQLRG 689 Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641 RVGRG + S C+LL + + + RL+VL ++DGF IAE DL+ R GE+LG +QSG+ Sbjct: 690 RVGRGAQQSYCLLLLNSARNDAAKQRLNVLAQSQDGFFIAEMDLRLRGPGEVLGTRQSGL 749 Query: 642 PKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 P F +A LE AR A ++ QDP+L Sbjct: 750 PDFALASLVEDQDCLEAARSAASELIAQDPEL 781 >gi|71905998|ref|YP_283585.1| ATP-dependent DNA helicase RecG [Dechloromonas aromatica RCB] gi|71845619|gb|AAZ45115.1| ATP-dependent DNA helicase RecG [Dechloromonas aromatica RCB] Length = 683 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 228/602 (37%), Positives = 358/602 (59%), Gaps = 14/602 (2%) Query: 76 ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 + Q + Q + RR + D +GEITL FF + EG ++ G+++ Sbjct: 66 VVQSNEVQFRPRRQMIVRAADDSGEITLRFFSFYPSQ-QAALSEGSRLRAFGEVRGGFFG 124 Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQ 195 MVHP + + + +Y GL+ +K+I +AL+ + L + + + L Q Sbjct: 125 AEMVHPRFRKVGGDEALPTEMTPIYPSTAGLANSALQKLIGKALA-VGDLSDTLPETLRQ 183 Query: 196 KKSFPSIAEAFNIIHNPRKAKDFEW----TSPARERLAYDELLAGQIALLLMRKQF--KK 249 + P +A + N +H P D + PA R+ +DE+LA Q++L R+ + ++ Sbjct: 184 RLKLPGLARSLNFLHRPPPGTDLDTLHARNHPAWRRVKFDEVLAQQLSL---RRAYLARR 240 Query: 250 EIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 E G P+ V + + ++L +PF T +Q A+ +I D++Q M R+LQGDVG+GKT+ Sbjct: 241 EQGAPVLVAQDDLGARLLDQLPFGLTGAQLRAMAEIADDLAQPYPMQRLLQGDVGAGKTI 300 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VA +A A+ AG QA MAP ILA+QHY +K + + + V ++G++ +R+ L Sbjct: 301 VAALAACQAISAGWQAAFMAPTEILAEQHYLKLKDWLEPLGVKVAWLSGSLKTKAKREQL 360 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428 A +A +++GTHAL QD + + +L L IVDEQHRFGV QRL L +K PH L+M+A Sbjct: 361 AATA-AEAQLVVGTHALIQDGVDFARLGLAIVDEQHRFGVAQRLALRKKGNNPHQLMMSA 419 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488 TPIPRTL ++ D+D++ + E P GR PIKT ++ NR ++V+ +K + EG++AYW+ Sbjct: 420 TPIPRTLAMSYYADLDVTVLDELPPGRTPIKTRLVADNRREDVVGFVKKSVEEGRQAYWV 479 Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 CP IEE + ++ + + L I ++HGR+ +K++VM +F G +L+A Sbjct: 480 CPLIEESEALQLQTAQDTYEQLSIDLPELVIGLVHGRLKADEKQAVMAAFAAGDIDVLVA 539 Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607 TTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG+ SSC+L+Y PL + + R Sbjct: 540 TTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGKYESSCVLIYAGPLGEIARQR 599 Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 L ++ DGF IA +DL+ R GE +G +QSG+P A E+ L+E+AR A+ +L Sbjct: 600 LKIIFENTDGFEIARQDLQIRGPGEFVGARQSGVPLLRYADLEMDADLVEMARDVAEEML 659 Query: 668 TQ 669 T+ Sbjct: 660 TE 661 >gi|158338329|ref|YP_001519506.1| ATP-dependent DNA helicase RecG [Acaryochloris marina MBIC11017] gi|158308570|gb|ABW30187.1| ATP-dependent DNA helicase RecG [Acaryochloris marina MBIC11017] Length = 818 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 235/682 (34%), Positives = 400/682 (58%), Gaps = 31/682 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P+ + G+G K + L K+ DLLFY+P ID + I ++ E VT Sbjct: 124 PILSLSGIGPKSAQKLEKL------GLFSVRDLLFYYPRDHIDYARQVSIRDLEEGATVT 177 Query: 72 ITGYISQHSSFQLQKRRP----YKILLNDGTGEITLLFFYRKT--------EMLKNVFFE 119 + + + + F R P +++++ D TG++ L FY E K ++ Sbjct: 178 LVATVRRVNCFS-SPRNPKLTIFELVVKDATGQLKLSRFYAGNRFRSRGWQEQQKRLYPP 236 Query: 120 GRKITVTGKIKKLKNRIIMVHP--HYIFHNSQDVNFPLIEAV---YSLPTGLSVDLFKKI 174 G + +G +K K I + +P + H+ + +I V Y+L G++ DL ++ Sbjct: 237 GAVVAASGLVKSSKYGITLDNPDLEVLNHSGDKIESMVIGRVVPIYALTEGVTPDLVRRA 296 Query: 175 IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234 +V AL L + + + L Q+ + + A +H P D + AR RL +DE Sbjct: 297 VVAALPAAKSLRDPLPEGLRQQNNLTDLPSAIADVHFP---PDSDALDRARHRLIFDEFF 353 Query: 235 AGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 Q+ +L+ R+Q ++ +P++V G++ ++ +PF+ T +Q+ ++DIL D+ Sbjct: 354 YLQLGMLVRRQQQRQTQESVPLSVHGELLERFYEVLPFTLTGAQKRVVQDILADLQSTQP 413 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R++QGDVGSGKT+VA+IA+ +A+++G Q +MAP +LA+QHY + ++ + V+ Sbjct: 414 MNRLVQGDVGSGKTVVAVIALLSAIQSGYQTALMAPTEVLAEQHYHKLVEWFNQLHLPVD 473 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++TG+ A RR+ E++ G+ +++GTHAL QD++++ +L L ++DEQHRFGVQQR Sbjct: 474 LLTGSTKAAKRRQIAEQLKTGELPLLVGTHALIQDNVEFDRLGLAVIDEQHRFGVQQRAL 533 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 L QK PHVL MTATPIPRTL LT GD+D+S+I E P GR+ I+T ++ + Sbjct: 534 LQQKGQHPHVLTMTATPIPRTLALTLHGDLDVSQIDELPPGRQAIQTTMLTTRDRAHAYD 593 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKE 531 ++ +++G++ Y + P +EE ++ + RS V+ + L + + ++HGR++ +KE Sbjct: 594 LMRREIAQGRQIYIVLPLVEESEKLDLRSAVQEHDRLQTTIFPNFQVGLLHGRLTSAEKE 653 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 V+ F+ T +L++TTV+EVG+D+ +A++++IE+A+ FGL+QLHQLRGRVGRG S Sbjct: 654 EVISQFREHTLHILVSTTVVEVGVDIPNATVMLIEHADRFGLSQLHQLRGRVGRGAHQSY 713 Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 C+L+ + ++ + RL+VL+ ++DGF IAE DL+ R GE+LG +QSG+P +A Sbjct: 714 CLLM-NSSKTETARQRLAVLEQSQDGFFIAEMDLRFRGPGEVLGTRQSGLPDLALASLVD 772 Query: 652 HDSLLEIARKDAKHILTQDPDL 673 LE+AR+ A+ +L +D L Sbjct: 773 DQETLELARQAAEKVLEKDSTL 794 >gi|295095240|emb|CBK84330.1| ATP-dependent DNA helicase RecG [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 693 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 256/677 (37%), Positives = 380/677 (56%), Gaps = 28/677 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI DLL + P + DR KI ++ T Sbjct: 10 PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTQLYKIGDLLPAIYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DGTG +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNITFGGRRMMTCQISDGTGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPVLP- 186 K M+HP Y D++ P ++ VY G+ +K+ +AL L Sbjct: 122 GKYGAEMIHPEYRVQG--DLSSPELQETLTPVYPTTEGIKQATLRKLTDQALELLDTCAI 179 Query: 187 -EWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALL 241 E + +L Q S+ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 NELLPPELAQ--GMMSLPEALRTLHRPPPTLQLVDLESGKHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ ++ K+L ++PF PT +Q +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSQRDELKDKLLASLPFKPTGAQARVTAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGLQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRRSDIIDRVRN 477 Query: 478 VLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 + EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACTHEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMQ 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAIASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKAPLSKTAQMRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDPD 672 + ++ A+HI + P+ Sbjct: 658 IPEVQRLARHIHERYPE 674 >gi|188492293|ref|ZP_02999563.1| ATP-dependent DNA helicase RecG [Escherichia coli 53638] gi|188487492|gb|EDU62595.1| ATP-dependent DNA helicase RecG [Escherichia coli 53638] Length = 693 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 255/676 (37%), Positives = 380/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLAAGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +D++ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDLALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ + + L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVLFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|304411703|ref|ZP_07393315.1| ATP-dependent DNA helicase RecG [Shewanella baltica OS183] gi|307306245|ref|ZP_07585990.1| ATP-dependent DNA helicase RecG [Shewanella baltica BA175] gi|304349891|gb|EFM14297.1| ATP-dependent DNA helicase RecG [Shewanella baltica OS183] gi|306911118|gb|EFN41545.1| ATP-dependent DNA helicase RecG [Shewanella baltica BA175] Length = 691 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 250/680 (36%), Positives = 387/680 (56%), Gaps = 30/680 (4%) Query: 10 FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69 P++ +GV KK + L+K+ T DLLF+ P + DR I+ + Sbjct: 6 LVPITDLKGVAKKVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALMPGSY 59 Query: 70 VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 TI I S Q+ + R ++ N D TG ++L FF +N G I G Sbjct: 60 GTIEAEIQ---STQIIQGRKRMLVCNVRDDTGSLSLRFFNFSVAQ-RNAMQNGLMIRAYG 115 Query: 128 KIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 ++++ ++ +VHP Y + + +DV+ + +Y GL + K+ +AL +L Sbjct: 116 EVRRGGHQAEIVHPEYKVVYPGEDVHLSDTLTPIYPTTEGLKQASWLKLTEQALV---LL 172 Query: 186 PEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAK---DFEWTS-PARERLAYDELLAGQI 238 + +LL + P S+ +A +H P D E PA++RL +ELLA + Sbjct: 173 EDGGLTELLPPQLQPNNISLKQALQTLHRPPAGISQFDLELGQHPAQQRLVQEELLAHNL 232 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 ++L +R++ + + + G++ L +PF PT +Q+ + DI +D+ + + M+R++ Sbjct: 233 SMLRLRQRSNLDAAVTMQATGQLLNPFLAALPFKPTGAQQRVVADIGKDLEKPHPMMRLV 292 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKTLVA +A A+E G Q +MAP +LA+QH + + + V + G Sbjct: 293 QGDVGSGKTLVAAMAALQAIENGYQVAMMAPTELLAEQHATNFAAWFEPLGLKVGWLAGK 352 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + R ++L I G A ++IGTHA+FQ + + KL L+I+DEQHRFGV QRL L +K Sbjct: 353 LKGKARAQSLADIESGAAQMVIGTHAIFQQHVVFNKLALIIIDEQHRFGVHQRLGLREKG 412 Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 + PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV I +R +EV+ER Sbjct: 413 VSQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIADSRRNEVLER 472 Query: 475 LK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532 ++ V+++ ++AYW+C IEE + ++ + L +I ++HGR+ +K+ Sbjct: 473 VRNAVITDKRQAYWVCTLIEESEVLECQAAEDTAEELRLALPELNIGLVHGRLKSAEKQQ 532 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +M FK G LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C Sbjct: 533 IMADFKAGIIHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAIASHC 592 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +LLY PLS + RLSVL+ + DGF+IA++DL+ R GE+LG KQ+G+ + IA Sbjct: 593 VLLYKAPLSHTATQRLSVLRQSNDGFIIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRD 652 Query: 653 DSLLEIARKDAKHILTQDPD 672 +L+ +K A H++ Q P+ Sbjct: 653 QALIPHIQKLANHVMAQAPE 672 >gi|210622470|ref|ZP_03293175.1| hypothetical protein CLOHIR_01123 [Clostridium hiranonis DSM 13275] gi|210154183|gb|EEA85189.1| hypothetical protein CLOHIR_01123 [Clostridium hiranonis DSM 13275] Length = 691 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 244/643 (37%), Positives = 379/643 (58%), Gaps = 14/643 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP-YKILLNDGTGEI 101 DLL+Y P F DR KI+++ +E VT+ I+ S+ +K +I + D TG Sbjct: 36 DLLYYFPRQFEDRSVIKKIAQLEDEEKVTVKALITNIESYTPKKGMTITRIDVKDDTGFA 95 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161 L FF R E +KN F G I GK+KK + + + ++ N + VY Sbjct: 96 KLTFFNR--EYIKNTFRVGDSILAFGKVKKNGRFVELNSCELEYLSTSPKNIGKLVPVYP 153 Query: 162 LPTGLS-VDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220 L G++ D+ + + ++ +PE++ + LL+K I A IH P KD E Sbjct: 154 LSYGITNKDIMNTVRMVFENKDIKIPEYMPEYLLKKYRLCGIDYAIKNIHFP---KDKES 210 Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280 A RL ++ELL Q+ L + + E GI + ++ + +L ++PFS T++Q A Sbjct: 211 LKVALYRLIFEELLVLQLGLFMYKGGNSNEKGILFKRDQRLDE-VLESLPFSLTRAQNRA 269 Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340 + +I+ DM + M R++QGDVGSGKT+VAL+A+A V G Q +MAP ILAQQHYE Sbjct: 270 LNEIIDDMCSEKVMNRLVQGDVGSGKTVVALLALAECVFNGYQGALMAPTEILAQQHYES 329 Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400 + ++ I VE++TG++ + + L R G+ I+IGTHAL +D++++ + LVI Sbjct: 330 FTETFEDIGINVELLTGSVTKKQKEGILHRARDGEIDILIGTHALIEDNVEFKNIGLVIT 389 Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460 DEQHRFGV+QR KL+ K T+P +L+MTATPIPRTL L GD+DIS I E P GR+PI+T Sbjct: 390 DEQHRFGVRQRGKLSSKGTSPDILVMTATPIPRTLALILYGDLDISIIDELPPGRQPIET 449 Query: 461 VIIPINRIDEVIERL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-- 517 + + + D+V L + + +G++ Y +CP +EE + + S E + F Sbjct: 450 IAVEKKKRDKVYNSLVRREVDKGRQVYIVCPLVEESESLDITSATETAEEIKRDFFPDLR 509 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 + ++HG+M +K+++M +FKN +L++TTVIEVG++V +++++IIENAE FGLAQLH Sbjct: 510 VGLLHGKMKPSEKDAIMTAFKNHELDILVSTTVIEVGVNVPNSTLMIIENAERFGLAQLH 569 Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637 QLRGRVGRG+ S C+L+Y S+ R+ +++ T DGF I+E+DL+ R GE G Sbjct: 570 QLRGRVGRGKHQSYCVLIYGSN-SEVCRKRMGIMEETNDGFKISEKDLEIRGPGEFFGTM 628 Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP--DLTSVRG 678 Q G+P+ +A H +L+ +++A+ I+ +D D RG Sbjct: 629 QHGVPELKVANLFKHMKILKTVQQEARIIIGEDSTLDFKEYRG 671 >gi|157163133|ref|YP_001460451.1| ATP-dependent DNA helicase RecG [Escherichia coli HS] gi|170018118|ref|YP_001723072.1| ATP-dependent DNA helicase RecG [Escherichia coli ATCC 8739] gi|157068813|gb|ABV08068.1| ATP-dependent DNA helicase RecG [Escherichia coli HS] gi|169753046|gb|ACA75745.1| ATP-dependent DNA helicase RecG [Escherichia coli ATCC 8739] gi|323939588|gb|EGB35794.1| ATP-dependent DNA helicase RecG [Escherichia coli E482] Length = 693 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 255/676 (37%), Positives = 380/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLAAGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +D++ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDLALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ + + L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVLFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|237747216|ref|ZP_04577696.1| ATP-dependent DNA helicase recG [Oxalobacter formigenes HOxBLS] gi|229378567|gb|EEO28658.1| ATP-dependent DNA helicase recG [Oxalobacter formigenes HOxBLS] Length = 687 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 254/677 (37%), Positives = 392/677 (57%), Gaps = 29/677 (4%) Query: 11 APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI- 69 PLS G + ++K+ G + ++ + PS + D I+E RI Sbjct: 3 GPLS-----GSCFQTIMNKLERLGIRTD---METALHLPSRYEDETKLTNIAEALFRRIG 54 Query: 70 -VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 + G ++ S Q RR + ++DGT ++ L F + +K + G++I V G+ Sbjct: 55 HAQVEGVVTA-SEIQYHPRRQLVVFVSDGTSQLVLRFLHFYGSQVKQLAV-GKRIRVRGE 112 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 +++ N + M+HP Y D + PL + VY G+S + +K I L RL L Sbjct: 113 LRQGYNGVEMIHPAY---RIVDESTPLPVALTPVYPTCDGISQNYLRKEIGAVLKRLD-L 168 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALL 241 + + + LL + P ++A +HNP D + + PA +R+ +DELLA Q+++ Sbjct: 169 SDTLPEALLAELELPLFSDAIRFLHNPPAGVDENALLDRSHPAWKRMKFDELLAQQLSMR 228 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 + +++ P+ G++ ++ +R++PF+ T +Q+ + +I +DM + M R+LQGD Sbjct: 229 RAQIARRRQKSHPLEKTGELTERFVRSLPFALTHAQQEVLAEIREDMGRAFPMQRLLQGD 288 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VA IA A++ G QA +MAP ILA+QH+E + + + + V I+G+M + Sbjct: 289 VGSGKTVVAAIAALLAIDNGFQAAMMAPTEILAEQHFERLSSWMKPLGLSVIGISGSMKK 348 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK---- 417 + AL I GQA +IGTHAL QD++++ L LVIVDEQHRFGV QRL L K Sbjct: 349 KEKDAALSMIQTGQAQFVIGTHALIQDAVRFANLGLVIVDEQHRFGVGQRLVLRNKGDLH 408 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 + PH L+M+ATPIPRTL +T D+D+S I P GRKP+ T +I R DEVI R+ Sbjct: 409 SAIPHQLMMSATPIPRTLAMTFYADLDVSVIAGLPPGRKPVVTRLIDQERRDEVIARIHA 468 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 +G++ YW+CP IEE + ++ V+ L + S+ ++HGRM ++K+ VM Sbjct: 469 ATLDGRQVYWVCPLIEESESLQLQTAVDTHAVLADALKGLSVGLVHGRMKPVEKQRVMSD 528 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F +G ++L+ATTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG+ S C+L+Y Sbjct: 529 FVDGRIQVLVATTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGDVDSVCLLMY 588 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PL + + RL ++ T DGF+IA+ DL+ R GE LG +QSG A E L+ Sbjct: 589 QKPLGETARQRLRTMRETNDGFIIAQRDLEIRGPGEFLGSRQSGQAMLRFADLEKDGELI 648 Query: 657 EIARKDAKHILTQD-PD 672 E A A+ +LT+ PD Sbjct: 649 EKAASLAEALLTKRFPD 665 >gi|269468391|gb|EEZ80056.1| recG-like helicase [uncultured SUP05 cluster bacterium] Length = 688 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 243/641 (37%), Positives = 371/641 (57%), Gaps = 17/641 (2%) Query: 44 LLFYHPSSFIDRHYRPKI--SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101 LLF+ P + ++ K+ +++ +E +V +T ++ ++R L+D Sbjct: 33 LLFHLPHRYQNKTKITKLNQAQVGDEILVELTIDRTEEVP---TRQRQLLCYLSDNDNRT 89 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF--PLIEAV 159 LL F+ + K G I G++K ++ + M HP Y + N + + Sbjct: 90 LLLRFFHFNQYQKQNLTRGETIQCFGEMKIGRDGLEMHHPEYRLISKGQTNLLEKTLSPI 149 Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR------ 213 Y L + KK I AL L + L K S P++ +A N +H+P+ Sbjct: 150 YPLTANIHQAQLKKWIDIALETLQKSDLIDNFENLSKNSMPTLKQALNTLHHPQINENID 209 Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 + DF+ S ++RL +EL A Q++LL ++ + K +I ++ +++ ++L ++ F Sbjct: 210 QIADFKHIS--QQRLIIEELCAHQLSLLKLKNERKHKISNIFELKTQLSDQLLNDLGFKL 267 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T +Q +I +I D+S + MLR+LQGDVGSGKT+VA+ A AVE QA IMAP IL Sbjct: 268 TNAQRRSIDEINTDISSPHPMLRLLQGDVGSGKTIVAVFACLQAVENSFQAAIMAPTEIL 327 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A QH + Y I V +TG+ + R + L +I GQA +IIGTHALFQ+++ + Sbjct: 328 AAQHLQGFSNYLAPLGIDVAFLTGSQNTSQRAEQLNKIKSGQAQVIIGTHALFQEAVTFN 387 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452 KL LV++DEQH+FGV QRL L QKA PH L+MTATPIPR+L +++ D+D S I E P Sbjct: 388 KLGLVVIDEQHKFGVHQRLSLAQKAHNTPHQLVMTATPIPRSLTMSAYADLDSSIIDELP 447 Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512 GRKP+KT+ I +R +EVI+++K V ++ + YW+C IEE + S + + L E Sbjct: 448 PGRKPVKTIAISADRKNEVIKKIKQVCNDNNQVYWVCTLIEESEVLRAESAINTHHYLQE 507 Query: 513 HFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 + + S+ +IHG+M+ +K +M F +L+ATTVIEVG++V +AS+++IEN+E Sbjct: 508 NLPNLSVVLIHGKMNKDEKSEIMRQFSANKIDVLVATTVIEVGVNVPNASLMVIENSERL 567 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631 GLAQLHQLRGRVGRG + S CIL+Y PLS N+ RL +L+ T DGF IA++DL+ R G Sbjct: 568 GLAQLHQLRGRVGRGADASICILMYQTPLSANATERLDILRQTNDGFAIAQKDLELRGPG 627 Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 EILG +Q+G+ IA L+ R ++H L D + Sbjct: 628 EILGTQQTGIADMKIANIVRDGYLMNQVRYYSEHFLQLDEN 668 >gi|238019125|ref|ZP_04599551.1| hypothetical protein VEIDISOL_00987 [Veillonella dispar ATCC 17748] gi|237863824|gb|EEP65114.1| hypothetical protein VEIDISOL_00987 [Veillonella dispar ATCC 17748] Length = 680 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 246/669 (36%), Positives = 385/669 (57%), Gaps = 33/669 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L+T +G+G L K+ G N T LL Y P S+ DR +I E+ + Sbjct: 5 LTTIKGIGPGREKQLHKL---GITNVT---SLLTYFPRSYEDRRTIYRIGELKSGMTGGV 58 Query: 73 TGYISQHSSFQLQKRRP------YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 G + +Q++RP ++++ DGTG + ++ F + + KN + +G+++ Sbjct: 59 MGNV-----IAVQEKRPRPRLSILEVVIADGTGPLKIVLFNQGYK--KNFYKKGQRLYAY 111 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184 GK + + M P N D P I +Y+L G+S + + + + Sbjct: 112 GKAEFQYGAMQMNTPQ--IENLGDGGEPDRGIVPIYALADGVSQFVVRSSVRNWFAANHE 169 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 L E + ++ + + S +AF ++H P ++ +E AR +LAY+EL Q L L+R Sbjct: 170 LQEILPAEVREAHQYMSRYDAFKMMHFPASSERYE---EARHQLAYEELFVMQSGLALLR 226 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 + + G + G + + + N+PFS T Q+ A++DI DM + M R+LQGDVGS Sbjct: 227 NKEQCHKGSKMGPNGDLMAQCIENLPFSLTGDQQRALEDIRIDMEDERPMQRLLQGDVGS 286 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKT+VA +++ A+E G Q +MAP ILA QHYE I + +N I +E++TG+ + + Sbjct: 287 GKTVVATLSLLKAIENGYQGALMAPTEILAAQHYEGITEVCRNLGITIELLTGSTTKKEK 346 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424 + E +A G ++IIGTHAL Q+ + ++ L LVI+DEQHRFGV+QR +L QK T PHVL Sbjct: 347 ERIYEGLADGSINMIIGTHALIQEGVNFHNLGLVIIDEQHRFGVEQRARLQQKGTYPHVL 406 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 +MTATPIPRT+ L+ GD+ +S I E P GRKP+KT + + + + ++EG++ Sbjct: 407 IMTATPIPRTMTLSVYGDLAVSLIKEMPPGRKPVKTYAVDSSYKERLRNFFGKEMAEGRQ 466 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542 Y +CP +EE ++ + ++ E + L E+F + + ++HGRM +K+ VM++F G Sbjct: 467 VYVVCPLVEESEKLDLQAAEELYLELKEYFYKAYEVGLVHGRMKPSEKDEVMNAFHKGDI 526 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 LL++TTVIEVG++V +A+I+ IE AE FGL+QLHQLRGRVGRG S CIL+ SK Sbjct: 527 SLLVSTTVIEVGVNVPNATIMCIEGAERFGLSQLHQLRGRVGRGSHQSYCILVSD---SK 583 Query: 603 N--SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 N S RL +++ T+DGF +AE+DL R G++ G+ QSG+P +A +L AR Sbjct: 584 NDVSQERLKLMEQTQDGFELAEQDLLLRGSGQLFGLAQSGLPDLRVANIIKDIEILVQAR 643 Query: 661 KDAKHILTQ 669 KD +Q Sbjct: 644 KDVLDFASQ 652 >gi|289668008|ref|ZP_06489083.1| ATP-dependent DNA helicase RecG [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 717 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 258/708 (36%), Positives = 389/708 (54%), Gaps = 52/708 (7%) Query: 3 PSFLNPLFAPLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 PS APLS+ GVG K + F ++ I DL + P + DR I Sbjct: 9 PSLAVAGQAPLSSLPGVGPKVADKFAARGI-------LSVQDLWLHLPLRYEDRTRLTTI 61 Query: 62 SEISEERIVTITGYISQ-HSSFQLQKRRP-YKILLNDGT-GEITLLFFYRKTEMLKNVFF 118 +++ I G + F+ RP ++ ++D + G + L FF+ + + F Sbjct: 62 AQLQSGVPAQIEGRVDAVERGFRF---RPVLRVAVSDASHGTLVLRFFHFRAAQVAQ-FA 117 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIV 176 G ++ V G K +N +VHP Y + +D ++ VY + G+ +K+I Sbjct: 118 VGTRVRVFGTPKPGQNGWEIVHPSYRVLAPDEDAGLGDSLDPVYPVLEGVGPATLRKLIG 177 Query: 177 EALSRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPAR 225 +AL RLP + P W LQ + PS+ A +H P D PA+ Sbjct: 178 QALERLPPEAALELLPPHW-----LQDEQLPSLRAALLTMHRPPVGTDPQQLLAGGHPAQ 232 Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285 +RLA +ELLA Q++L R ++ + G + Q++ + +PF T +Q+ + I Sbjct: 233 QRLAIEELLAHQLSLRRQRIALQRFHAPTLPGNGTLVQQLRKALPFQLTGAQQRVFEQIA 292 Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345 +D++Q + MLR++QGDVGSGKT+VA +A AVE G Q + AP +LA+QH ++ + Sbjct: 293 RDLAQPSPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLNNLRGWL 352 Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405 + I + + G + R A+ +A GQA +++GTHAL Q+++ ++ L L I+DEQHR Sbjct: 353 EPLGIRIVWLAGKVTGKARAAAMADVASGQAQVVVGTHALMQEAVVFHDLALAIIDEQHR 412 Query: 406 FGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461 FGV QRL L K A PH L+MTATPIPRTL +++ D+D+S I E P GR P++T+ Sbjct: 413 FGVHQRLALRDKGAAAGSVPHQLVMTATPIPRTLAMSTYADLDVSAIDELPPGRTPVQTI 472 Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--------------FRSVVERF 507 ++ R E++ER++V +EG++AYW+C IEE +E ++ F Sbjct: 473 VLSAERRPELVERIRVACAEGRQAYWVCTLIEESEEPEKGAHGQHSGPPRIEAQAAEVTF 532 Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 +L +A++HGRM +K+ M FK G LL+ATTVIEVG+DV +AS++IIE Sbjct: 533 EALSAQLPGVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIE 592 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626 NAE GLAQLHQLRGRVGRG SSC+LLY PLS + RL ++ T DGF+IAE+DL+ Sbjct: 593 NAERLGLAQLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLE 652 Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 R GE+LG +Q+G+ F IA LL + A+ +L + PD+ Sbjct: 653 LRGPGELLGTRQTGLASFRIADLARDAGLLPRVQVLAERLLAEAPDIA 700 >gi|83719281|ref|YP_441827.1| ATP-dependent DNA helicase RecG [Burkholderia thailandensis E264] gi|83653106|gb|ABC37169.1| ATP-dependent DNA helicase RecG [Burkholderia thailandensis E264] Length = 859 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 249/662 (37%), Positives = 372/662 (56%), Gaps = 29/662 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D + E+ G + + +R+ L +D Sbjct: 186 TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 245 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 E+ L F +K + G+++ V G ++ + +VHP D + PL +A Sbjct: 246 AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPSV---RVVDEDAPLPQA 301 Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 VY G+S +K I AL+R P+ LP + + LQ PS+A+A I+H+P Sbjct: 302 LTPVYPSTAGVSQAYLRKAIDNALTRTPLPELLPPEVARAYLQPLDVPSLADAVRILHHP 361 Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IAQ 263 D + T PA R+ +DELLA Q++L ++ + + + ++ Sbjct: 362 GVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRARDDGASLSA 421 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 ++ +PF+ T +QE + +I D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q Sbjct: 422 RLYAALPFTLTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQ 481 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 A +MAP ILA+QH ++ + + + V + G++ +R ALE A G A ++IGTH Sbjct: 482 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKTKDKRAALEAAALGTARLVIGTH 541 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRT 434 A+ QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRT Sbjct: 542 AMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRT 601 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L +T D+D+S I E P GR PI T ++ R DEVI R++ G++ YW+CP IEE Sbjct: 602 LAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEE 661 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ VE + +L + ++HGR++ +K +VMD+F +LL+ATTVIEV Sbjct: 662 SETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEV 721 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+L+Y PLS RL ++ Sbjct: 722 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRE 781 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 T DGF IA DL+ R GE LG +QSG A E L+E AR A H++ PD+ Sbjct: 782 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAAHLIAGHPDV 841 Query: 674 TS 675 + Sbjct: 842 VA 843 >gi|323143100|ref|ZP_08077802.1| ATP-dependent DNA helicase RecG [Succinatimonas hippei YIT 12066] gi|322417125|gb|EFY07757.1| ATP-dependent DNA helicase RecG [Succinatimonas hippei YIT 12066] Length = 710 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 250/673 (37%), Positives = 375/673 (55%), Gaps = 30/673 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVT 71 +S +GVG K S L+++ DL+F+ P + DR Y K+S+++ + V Sbjct: 13 VSNLKGVGPKISSSLNRL------KIFSLFDLIFHFPFRYQDRTYISKVSDLTTDSGSVL 66 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + + F + + KIL D TG I FF + N F GR++ G IK Sbjct: 67 LCLKVKAVEGFVGSRGKVLKILFADDTGIIEASFFNTYATFVHN-FTSGRRVLAYGSIKP 125 Query: 132 --LKNRIIMVHPHYIF--HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVL 185 + R +VHP F N + +YS GL + +K I AL + L Sbjct: 126 DYMTGRPSLVHPEITFLQTNETVTTEEFLTPIYSSTEGLGQAILRKTIKTALDLIQKAPL 185 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR----ERLAYDELLAGQIALL 241 PE + K+L S+++A +H P D P + ER+ Y+EL+A Q+ LL Sbjct: 186 PEILPKNL--NPYGMSLSDAIKGVHYPHPQSDHTPIVPQKLTSFERICYEELIAYQLCLL 243 Query: 242 LMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L++ + + + + K++ L ++PF PT +Q +IL+D+++ M R++ G Sbjct: 244 LLKVSNSSHKAALSVAFDSKLSDDFLHSLPFKPTLAQLKVFNEILEDLNKDIPMARLVHG 303 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKTLVA+++ ++AGGQ V+++P ILA+QH+ + + ++T + Sbjct: 304 DVGSGKTLVAIMSALQVIKAGGQCVLLSPTDILARQHFAKCSSLLKEFNVNCLLLTASER 363 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-- 418 ++ R L+ I+ G A IIGTHA+FQD + Y L LVI+DEQHRFG++QR+ L KA Sbjct: 364 KSDRLNLLKAISDGSAQFIIGTHAVFQDDVIYKHLALVIIDEQHRFGIEQRIALLNKAPQ 423 Query: 419 -TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 T+ H L+MTATPIPRTL L D+++S I E P GR P+ T +I ++R D+VI RL Sbjct: 424 GTSAHQLVMTATPIPRTLQLALYSDLEVSTIDELPPGRCPVITALIQMSRKDDVIARLNA 483 Query: 478 VLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534 V S G +AYW+CP IEE + + +S+ E + H I ++HG+M+ K VM Sbjct: 484 VCSRGTQAYWVCPHIEEGENDDVASAKSIYEEISHKLPHL--KIGLLHGQMNAKQKNMVM 541 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 + F G +L ATT+IEVG+DV +A+I+II NAE GLAQLHQLRGRVGRG S C+L Sbjct: 542 EDFAAGKISILAATTIIEVGVDVPNATIMIINNAERLGLAQLHQLRGRVGRGSAQSYCLL 601 Query: 595 LYHP-PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 L++ P ++ + RL +++ + DGF IA EDL R GEI+G KQ+G F +A Sbjct: 602 LHNADPENQIAQKRLQIMRTSNDGFKIATEDLALRGPGEIIGTKQAGFDTFKVADVTRDH 661 Query: 654 SLLEIARKDAKHI 666 L+E AR A ++ Sbjct: 662 RLIESARNSALYL 674 >gi|257137995|ref|ZP_05586257.1| ATP-dependent DNA helicase RecG [Burkholderia thailandensis E264] Length = 857 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 249/662 (37%), Positives = 372/662 (56%), Gaps = 29/662 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D + E+ G + + +R+ L +D Sbjct: 184 TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 243 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 E+ L F +K + G+++ V G ++ + +VHP D + PL +A Sbjct: 244 AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPSV---RVVDEDAPLPQA 299 Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 VY G+S +K I AL+R P+ LP + + LQ PS+A+A I+H+P Sbjct: 300 LTPVYPSTAGVSQAYLRKAIDNALTRTPLPELLPPEVARAYLQPLDVPSLADAVRILHHP 359 Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IAQ 263 D + T PA R+ +DELLA Q++L ++ + + + ++ Sbjct: 360 GVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRARDDGASLSA 419 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 ++ +PF+ T +QE + +I D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q Sbjct: 420 RLYAALPFTLTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQ 479 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 A +MAP ILA+QH ++ + + + V + G++ +R ALE A G A ++IGTH Sbjct: 480 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKTKDKRAALEAAALGTARLVIGTH 539 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRT 434 A+ QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRT Sbjct: 540 AMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRT 599 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L +T D+D+S I E P GR PI T ++ R DEVI R++ G++ YW+CP IEE Sbjct: 600 LAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEE 659 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ VE + +L + ++HGR++ +K +VMD+F +LL+ATTVIEV Sbjct: 660 SETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEV 719 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+L+Y PLS RL ++ Sbjct: 720 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRE 779 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 T DGF IA DL+ R GE LG +QSG A E L+E AR A H++ PD+ Sbjct: 780 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAAHLIAGHPDV 839 Query: 674 TS 675 + Sbjct: 840 VA 841 >gi|126172599|ref|YP_001048748.1| ATP-dependent DNA helicase RecG [Shewanella baltica OS155] gi|125995804|gb|ABN59879.1| ATP-dependent DNA helicase RecG [Shewanella baltica OS155] Length = 696 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 250/680 (36%), Positives = 387/680 (56%), Gaps = 30/680 (4%) Query: 10 FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69 P++ +GV KK + L+K+ T DLLF+ P + DR I+ + Sbjct: 11 LVPITDLKGVAKKVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALMPGSY 64 Query: 70 VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 TI I S Q+ + R ++ N D TG ++L FF +N G I G Sbjct: 65 GTIEAEIQ---STQIIQGRKRMLVCNVRDDTGSLSLRFFNFSVAQ-RNAMQNGLMIRAYG 120 Query: 128 KIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 ++++ ++ +VHP Y + + +DV+ + +Y GL + K+ +AL +L Sbjct: 121 EVRRGGHQAEIVHPEYKVVYPGEDVHLSDTLTPIYPTTEGLKQASWLKLTEQALV---LL 177 Query: 186 PEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAK---DFEWTS-PARERLAYDELLAGQI 238 + +LL + P S+ +A +H P D E PA++RL +ELLA + Sbjct: 178 EDGGLTELLPPQLQPNNISLKQALQTLHRPPAGISQFDLELGQHPAQQRLVQEELLAHNL 237 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 ++L +R++ + + + G++ L +PF PT +Q+ + DI +D+ + + M+R++ Sbjct: 238 SMLRLRQRSNLDAAVTMQATGQLLNPFLAALPFKPTGAQQRVVADIGKDLEKPHPMMRLV 297 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKTLVA +A A+E G Q +MAP +LA+QH + + + V + G Sbjct: 298 QGDVGSGKTLVAAMAALQAIENGYQVAMMAPTELLAEQHATNFAAWFEPLGLKVGWLAGK 357 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + R ++L I G A ++IGTHA+FQ + + KL L+I+DEQHRFGV QRL L +K Sbjct: 358 LKGKVRAQSLADIESGAAQMVIGTHAIFQQHVVFSKLALIIIDEQHRFGVHQRLGLREKG 417 Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 + PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV I +R +EV+ER Sbjct: 418 VSQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIADSRRNEVLER 477 Query: 475 LK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532 ++ V+++ ++AYW+C IEE + ++ + L +I ++HGR+ +K+ Sbjct: 478 VRNAVITDKRQAYWVCTLIEESEVLECQAAEDTAEELRLALPELNIGLVHGRLKSAEKQQ 537 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +M FK G LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C Sbjct: 538 IMADFKAGIIHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAIASHC 597 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +LLY PLS + RLSVL+ + DGF+IA++DL+ R GE+LG KQ+G+ + IA Sbjct: 598 VLLYKAPLSHTATQRLSVLRQSNDGFIIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRD 657 Query: 653 DSLLEIARKDAKHILTQDPD 672 +L+ +K A H++ Q P+ Sbjct: 658 QALIPHIQKLANHVMAQAPE 677 >gi|160873476|ref|YP_001552792.1| ATP-dependent DNA helicase RecG [Shewanella baltica OS195] gi|160858998|gb|ABX47532.1| ATP-dependent DNA helicase RecG [Shewanella baltica OS195] Length = 696 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 250/680 (36%), Positives = 387/680 (56%), Gaps = 30/680 (4%) Query: 10 FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69 P++ +GV KK + L+K+ T DLLF+ P + DR I+ + Sbjct: 11 LVPITDLKGVAKKVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALMPGSY 64 Query: 70 VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 TI I S Q+ + R ++ N D TG ++L FF +N G I G Sbjct: 65 GTIEAEIQ---STQIIQGRKRMLVCNVRDDTGSLSLRFFNFSVAQ-RNAMQNGLMIRAYG 120 Query: 128 KIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 ++++ ++ +VHP Y + + +DV+ + +Y GL + K+ +AL +L Sbjct: 121 EVRRGGHQAEIVHPEYKVVYPGEDVHLSDTLTPIYPTTEGLKQASWLKLTEQALV---LL 177 Query: 186 PEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAK---DFEWTS-PARERLAYDELLAGQI 238 + +LL + P S+ +A +H P D E PA++RL +ELLA + Sbjct: 178 EDGGLTELLPPQLQPNNISLKQALQTLHRPPAGISQFDLELGQHPAQQRLVQEELLAHNL 237 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 ++L +R++ + + + G++ L +PF PT +Q+ + DI +D+ + + M+R++ Sbjct: 238 SMLRLRQRSNLDAAVTMQATGQLLNPFLAALPFKPTGAQQRVVADIGKDLEKPHPMMRLV 297 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKTLVA +A A+E G Q +MAP +LA+QH + + + V + G Sbjct: 298 QGDVGSGKTLVAAMAALQAIENGYQVAMMAPTELLAEQHATNFAAWFEPLGLKVGWLAGK 357 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + R ++L I G A ++IGTHA+FQ + + KL L+I+DEQHRFGV QRL L +K Sbjct: 358 LKGKARAQSLADIESGAAQMVIGTHAIFQQHVVFNKLGLIIIDEQHRFGVHQRLGLREKG 417 Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 + PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV I +R +EV+ER Sbjct: 418 VSQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIADSRRNEVLER 477 Query: 475 LK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532 ++ V+++ ++AYW+C IEE + ++ + L +I ++HGR+ +K+ Sbjct: 478 VRNAVITDKRQAYWVCTLIEESEVLECQAAEDTAEELRLALPELNIGLVHGRLKSAEKQQ 537 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +M FK G LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C Sbjct: 538 IMADFKAGIIHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAIASHC 597 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +LLY PLS + RLSVL+ + DGF+IA++DL+ R GE+LG KQ+G+ + IA Sbjct: 598 VLLYKAPLSHTATQRLSVLRQSNDGFIIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRD 657 Query: 653 DSLLEIARKDAKHILTQDPD 672 +L+ +K A H++ Q P+ Sbjct: 658 QALIPHIQKLANHVMAQAPE 677 >gi|124002554|ref|ZP_01687407.1| ATP-dependent DNA helicase RecG [Microscilla marina ATCC 23134] gi|123992383|gb|EAY31751.1| ATP-dependent DNA helicase RecG [Microscilla marina ATCC 23134] Length = 698 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 255/666 (38%), Positives = 389/666 (58%), Gaps = 26/666 (3%) Query: 41 FIDLLFYHPSSFIDRHYRPKISEISEERI-VTITGYISQHSSFQLQKRRPYKILLNDGTG 99 + DL+ Y+P DR +I+E++E V ++G I + ++ DGTG Sbjct: 32 YSDLILYYPFKHEDRTKVHRIAELNEGMTAVQLSGRIIRTQVIGEGHKKRLVAYFGDGTG 91 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159 E+ L++F T M K + + V GK + ++ + HP N + ++ V Sbjct: 92 EVELIWFKGVTWMQKQINANATYL-VFGKPQFFNHKFSIAHPEIELLNPAEQQSGFLQPV 150 Query: 160 YSLPTGLSVD-LFKKIIVEAL-SRLPVLPEWIEKDL----LQKKSFPSIAEAFNIIHNPR 213 Y++ + ++ K I + L + LP+ + IE++L LQ+ + +A IH P Sbjct: 151 YTVTEKMKRKYVYSKNISKMLRTLLPMAYQHIEENLSEAILQRYRLIARRDAVVNIHFP- 209 Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPF 271 KD +W A RL ++EL Q+ LL +K KK+I G I +++PF Sbjct: 210 --KDQQWLKRATTRLKFEELFYIQLKLLKEQKH-KKKIYQGQTFKDTSLIKDFYEKHLPF 266 Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331 T +Q+ ++I +DM+ +M R+LQGDVGSGKT+VA I+M +A+ +G QA ++AP Sbjct: 267 ELTDAQKRVCREIYRDMASGKQMNRLLQGDVGSGKTIVAFISMLSAIGSGAQACMVAPTE 326 Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391 ILA+QHY+ +KK+ I ++I+TG+ RR R+ +G I++GTHALF+D +Q Sbjct: 327 ILAEQHYQGLKKFADKLGITIDILTGSTRTRDRRVLHARLENGNLKILVGTHALFEDKVQ 386 Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKI 448 + L L IVDEQHRFGV+QR KL ++ + PH+L+MTATPIPRTL +T GD+D+S I Sbjct: 387 FDNLGLCIVDEQHRFGVEQRSKLWKRNSENLYPHILVMTATPIPRTLAMTLYGDLDVSVI 446 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE----GKKAYWICPQIEEKKESNFRSVV 504 E PAGRKPIKTV +R D R+ L E G++ Y + P IEE + +++++ Sbjct: 447 DELPAGRKPIKTV----HRYDAQRLRMFGFLREQIALGRQVYIVYPLIEESETLEYKNLM 502 Query: 505 ERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + S+ F ++I+HG+MS +DK+ M FK G ++++ATTVIEVG+DV +A++I Sbjct: 503 DGHESIQRAFPDQHLSIVHGQMSSVDKDFEMQRFKKGETQIMVATTVIEVGVDVPNATVI 562 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623 +IENAE FGL+QLHQLRGRVGRG E S CIL+ +SK TRL + T +GF IA+ Sbjct: 563 VIENAERFGLSQLHQLRGRVGRGAEQSYCILMTDYKISKEGRTRLETMVKTNNGFEIADV 622 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683 DLK R G ++G +QSG+ IA +L+ ARK A+ I+ +DP+L S+ ++ Sbjct: 623 DLKLRGPGNMMGTQQSGLMNLQIADLAKDGKILQEARKMAQEIIEEDPELESLENSKMKE 682 Query: 684 LLYLYQ 689 + L Q Sbjct: 683 FMNLDQ 688 >gi|315265705|gb|ADT92558.1| ATP-dependent DNA helicase RecG [Shewanella baltica OS678] Length = 691 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 250/680 (36%), Positives = 387/680 (56%), Gaps = 30/680 (4%) Query: 10 FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69 P++ +GV KK + L+K+ T DLLF+ P + DR I+ + Sbjct: 6 LVPITDLKGVAKKVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALMPGSY 59 Query: 70 VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 TI I S Q+ + R ++ N D TG ++L FF +N G I G Sbjct: 60 GTIEAEIQ---STQIIQGRKRMLVCNVRDDTGSLSLRFFNFSVAQ-RNAMQNGLMIRAYG 115 Query: 128 KIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 ++++ ++ +VHP Y + + +DV+ + +Y GL + K+ +AL +L Sbjct: 116 EVRRGGHQAEIVHPEYKVVYPGEDVHLSDTLTPIYPTTEGLKQASWLKLTEQALV---LL 172 Query: 186 PEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAK---DFEWTS-PARERLAYDELLAGQI 238 + +LL + P S+ +A +H P D E PA++RL +ELLA + Sbjct: 173 EDGGLTELLPPQLQPNNISLKQALQTLHRPPAGISQFDLELGQHPAQQRLVQEELLAHNL 232 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 ++L +R++ + + + G++ L +PF PT +Q+ + DI +D+ + + M+R++ Sbjct: 233 SMLRLRQRSNLDAAVTMQATGQLLNPFLAALPFKPTGAQQRVVADIGKDLEKPHPMMRLV 292 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKTLVA +A A+E G Q +MAP +LA+QH + + + V + G Sbjct: 293 QGDVGSGKTLVAAMAALQAIENGYQVAMMAPTELLAEQHATNFAAWFEPLGLKVGWLAGK 352 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + R ++L I G A ++IGTHA+FQ + + KL L+I+DEQHRFGV QRL L +K Sbjct: 353 LKGKARAQSLADIESGAAQMVIGTHAIFQQHVVFNKLGLIIIDEQHRFGVHQRLGLREKG 412 Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 + PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV I +R +EV+ER Sbjct: 413 VSQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIADSRRNEVLER 472 Query: 475 LK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532 ++ V+++ ++AYW+C IEE + ++ + L +I ++HGR+ +K+ Sbjct: 473 VRNAVITDKRQAYWVCTLIEESEVLECQAAEDTAEELRLALPELNIGLVHGRLKSAEKQQ 532 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +M FK G LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C Sbjct: 533 IMADFKAGIIHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAIASHC 592 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +LLY PLS + RLSVL+ + DGF+IA++DL+ R GE+LG KQ+G+ + IA Sbjct: 593 VLLYKAPLSHTATQRLSVLRQSNDGFIIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRD 652 Query: 653 DSLLEIARKDAKHILTQDPD 672 +L+ +K A H++ Q P+ Sbjct: 653 QALIPHIQKLANHVMAQAPE 672 >gi|56415634|ref|YP_152709.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364561|ref|YP_002144198.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129891|gb|AAV79397.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096038|emb|CAR61625.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 693 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 254/676 (37%), Positives = 379/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI DLL + P + DR + I E+ T Sbjct: 10 PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN G ++ G+ K+ Sbjct: 64 VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGLRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ +Y G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPELQETLTPIYPTTEGVKQATLRKLTDQALELLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q S+ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRYHAQPLSTNNILKDKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + + V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R+ E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R E+I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +EG++AYW+C IEE ++ + L +I ++HGRM +K++VM Sbjct: 478 ACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAI 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRIARHIHERYP 673 >gi|148827157|ref|YP_001291910.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae PittGG] gi|148718399|gb|ABQ99526.1| ATP-dependent DNA helicase [Haemophilus influenzae PittGG] Length = 693 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 256/677 (37%), Positives = 392/677 (57%), Gaps = 26/677 (3%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L++ GVG S L+KI G N DLLF+ P + DR I+ + E+ TI Sbjct: 11 LTSLSGVGAAISNKLAKI---GIHN---LQDLLFHLPIRYEDRTRITPIANLRPEQYFTI 64 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G I Q +R + L+DGT +I L FF M +N F G ++ G++K+ Sbjct: 65 EG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVGVRVKAFGEVKRG 122 Query: 133 KNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190 ++ + HP Y + N+ V + +YS GL + +K+ +AL+ +L + Sbjct: 123 RHMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQALA---LLDKVQI 179 Query: 191 KDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLM 243 ++L + P S+ EA ++H P E PA++RL ++ELLA +A+ + Sbjct: 180 AEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQKV 239 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 R ++ +P++ + + Q+ L +PF PT +Q+ + DI QD+ + M+R++QGDVG Sbjct: 240 RLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDVG 299 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKTLVA +A A++ G Q +MAP ILA+QH +++ + I V + G + Sbjct: 300 SGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFKPFGIEVGWLAGKVKGKS 359 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420 R+ LE+I G +++GTHALFQ+ +++ L LVI+DEQHRFGV QRL L +K Sbjct: 360 RQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRLMLREKGEKAGF 419 Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478 PH L+MTATPIPRTL +T D+D S I E P GR PI TV++ R E++ R+K Sbjct: 420 YPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRAEIVMRVKNAC 479 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 ++E ++AYW+C I+E + ++ + L + +I ++HGRM +K+ VM F Sbjct: 480 VNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMRF 539 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 KN LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S C+L+Y Sbjct: 540 KNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGCTASFCVLMYK 599 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PPL K S RL VL++++DGF+I+E+DL+ R GE+LG KQ+G+ + +A ++ Sbjct: 600 PPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRVANLMRDRKMIP 659 Query: 658 IARKDAKHILTQDPDLT 674 + AK ++ + PD+ Sbjct: 660 TVQHYAKSLIQKYPDVA 676 >gi|193063827|ref|ZP_03044914.1| ATP-dependent DNA helicase RecG [Escherichia coli E22] gi|192930542|gb|EDV83149.1| ATP-dependent DNA helicase RecG [Escherichia coli E22] Length = 693 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 255/676 (37%), Positives = 379/676 (56%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG S L+KI N DLL + P + DR + I E+ T Sbjct: 10 PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GNYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q ++ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + K+L +PF T +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKQTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 ++EG++AYW+C IEE + ++ + L ++ ++HGRM +K++VM Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRLARHIHERYP 673 >gi|257059384|ref|YP_003137272.1| ATP-dependent DNA helicase RecG [Cyanothece sp. PCC 8802] gi|256589550|gb|ACV00437.1| ATP-dependent DNA helicase RecG [Cyanothece sp. PCC 8802] Length = 819 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 238/653 (36%), Positives = 382/653 (58%), Gaps = 29/653 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99 DLLFY+P ID + IS ++ VTI G + + + F K + +++ L D TG Sbjct: 150 DLLFYYPRDHIDYARQVSISRLNPGETVTIVGSVKRCNCFTSPKNKNLSIFELFLQDNTG 209 Query: 100 EITLLFFYRKT--------EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH-----YIFH 146 +I L F+ T E K ++ G + +G +K+ + + + +P + Sbjct: 210 KIKLNRFFAGTRFTNRGWQEKQKKLYPLGAIVAASGLVKQNRFGLTLDNPEIEVLDSLGS 269 Query: 147 NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206 N + + + VY L G+ DL ++ IV L + + + + L + + +A Sbjct: 270 NIESLKIGRVLPVYPLTEGVPADLIRRAIVACLGAIKQIRDPLPVGLRNQYGLIPLKDAI 329 Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ----FKKEIGIPINVEGKIA 262 IH P + AR RL +DE Q+ L R++ K I +P +GK+ Sbjct: 330 ANIHFPETPA---LLTHARRRLVFDEFFYLQLGFLQRRQEQKHLEKSAIFLP---QGKLI 383 Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 + + +PF T +Q+ I +IL+D++ M R++QGDVG+GKT+VA+ ++ AA+++G Sbjct: 384 ENFNQLLPFKLTNAQQRVINEILEDLNSSTPMNRLVQGDVGAGKTIVAVFSILAAIQSGY 443 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 QA +MAP +LA+QHY + + + VE++TG+ A RR+ ++ G+ +++GT Sbjct: 444 QAALMAPTEVLAEQHYRKLVTWFNLLHLPVELLTGSTKIAKRREIHSQLETGELPLLVGT 503 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 HAL QD + + +L LV++DEQHRFGVQQR KL K +PHVL MTATPIPRTL LT GD Sbjct: 504 HALIQDKVNFQRLGLVVIDEQHRFGVQQRAKLLAKGQSPHVLTMTATPIPRTLALTLHGD 563 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502 +D+S+I E P GR+PI+T + + + ++ +++G++AY I P IEE ++ + R+ Sbjct: 564 LDVSQIDELPPGRQPIQTTALMGKERTQAYDLIRREVAQGRQAYIIFPMIEESEKLDVRA 623 Query: 503 VVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560 VE L E +I ++HGRMS +K+ ++ +F++ +++++TTVIEVG+DV +A Sbjct: 624 AVEEHKKLSETVFPQFNIGLLHGRMSSSEKDEILTNFRDNKSQIIVSTTVIEVGVDVPNA 683 Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620 ++++IENAE FGL+QLHQLRGRVGRG S C+L+ + + +S RLSVL+ ++DGF I Sbjct: 684 TVMLIENAERFGLSQLHQLRGRVGRGSHQSYCLLMSNSK-TPDSRQRLSVLEQSQDGFFI 742 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 +E DL+ R G +LG +QSG+P F +A +LE+AR A+ IL D L Sbjct: 743 SEMDLRFRGPGTVLGTRQSGLPDFALASLVEDQEILELARSAAEKILIADSHL 795 >gi|269137385|ref|YP_003294085.1| ATP-dependent DNA helicase RecG [Edwardsiella tarda EIB202] gi|267983045|gb|ACY82874.1| ATP-dependent DNA helicase RecG [Edwardsiella tarda EIB202] gi|304557486|gb|ADM40150.1| ATP-dependent DNA helicase RecG [Edwardsiella tarda FL6-60] Length = 693 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 250/675 (37%), Positives = 381/675 (56%), Gaps = 26/675 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG + L+K+ DLL + P + DR +I E+ +VT Sbjct: 10 PLTSLSGVGASQAGKLAKL------GLVTIQDLLLHLPLRYEDRTRLYRIGELQPGMVVT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + +RR ++DG+G +TL FF M KN G+++ G+IK+ Sbjct: 64 VEGEVLR-TDVAFGRRRMLTSQISDGSGLLTLRFFNFSAAM-KNSLAPGKRVLAYGEIKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLPV--LP 186 + ++HP Y D L EA VY G+ +K+ +AL+ L + +P Sbjct: 122 GHHGGEIIHPEYRMQGD-DAAPALQEALTPVYPTTEGVRQATLRKLSDQALALLDITPIP 180 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNP----RKAKDFEWTSPARERLAYDELLAGQIALLL 242 E + L K+ S+ +A +H P + + PA+ RL +ELLA +++L Sbjct: 181 ELLPDAL--KQGLLSLPDALRTLHRPPPDIHQEDLAQGRHPAQRRLILEELLAHHLSMLA 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R ++ + + + + Q+ L +PF+PT +Q + DI DM++ M+R++QGDV Sbjct: 239 VRAGNQRHRALALATDDHLKQRFLAALPFTPTTAQRRVLGDIEADMAKSVPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 G GKTLVA +A A+ G Q +MAP +LA+QH +++ + V + G Sbjct: 299 GCGKTLVAALAALRAIAHGHQVALMAPTELLAEQHAANFRQWFAPLGLSVGWLAGKQKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R+ + IA G+ +++GTHALFQ+ +Q+ L LVI+DEQHRFGV QRL L +K A Sbjct: 359 ARQTQMAAIAAGEVDMVVGTHALFQEQVQFAGLALVIIDEQHRFGVHQRLALWEKGEAQG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV I R ++++R++ Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIADTRRQQILDRVRHA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 L E ++AYW+C IEE ++ +L + IA++HGRM DK+ VM Sbjct: 479 CLEEKRQAYWVCTLIEESDLLEAQAAEATAETLMQQLPELRIALVHGRMKAADKQRVMTQ 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLY Sbjct: 539 FKAGEVDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAIASHCVLLY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PLS+ + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G +F +A +L+ Sbjct: 599 KAPLSQTAQRRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGNAEFRVADLLRDQALI 658 Query: 657 EIARKDAKHILTQDP 671 ++ A+H+ + P Sbjct: 659 PEVQRIARHLHSAYP 673 >gi|218246338|ref|YP_002371709.1| ATP-dependent DNA helicase RecG [Cyanothece sp. PCC 8801] gi|218166816|gb|ACK65553.1| ATP-dependent DNA helicase RecG [Cyanothece sp. PCC 8801] Length = 819 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 238/653 (36%), Positives = 383/653 (58%), Gaps = 29/653 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99 DLLFY+P ID + IS ++ VTI G + + + F K + ++++L D TG Sbjct: 150 DLLFYYPRDHIDYARQVSISRLNPGETVTIVGSVKRCNCFTSPKNKNLSIFELILQDNTG 209 Query: 100 EITLLFFYRKT--------EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH-----YIFH 146 +I L F+ T E K ++ G + +G +K+ + + + +P + Sbjct: 210 KIKLNRFFAGTRFTNRGWQEKQKKLYPLGAIVAASGLVKQNRFGLTLDNPEIEVLDSLGS 269 Query: 147 NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206 N + + + VY L G+ DL ++ IV L + + + + L + + +A Sbjct: 270 NIESLKIGRVLPVYPLTEGVPADLIRRAIVACLGAIKQIRDPLPVGLRNQYGLIPLKDAI 329 Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ----FKKEIGIPINVEGKIA 262 IH P + AR RL +DE Q+ L R++ K I +P +GK+ Sbjct: 330 ANIHFPETPA---LLTHARRRLVFDEFFYLQLGFLQRRQEQKHLEKSAIFLP---QGKLI 383 Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 + + +PF T +Q+ I +IL+D++ M R++QGDVG+GKT+VA+ ++ AA+++G Sbjct: 384 ENFNQLLPFKLTNAQQRVINEILEDLNSSTPMNRLVQGDVGAGKTIVAVFSILAAIQSGY 443 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 QA +MAP +LA+QHY + + + VE++TG+ A RR+ ++ G+ +++GT Sbjct: 444 QAALMAPTEVLAEQHYRKLVTWFNLLHLPVELLTGSTKIAKRREIHSQLETGELPLLVGT 503 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 HAL QD + + +L LV++DEQHRFGVQQR KL K +PHVL MTATPIPRTL LT GD Sbjct: 504 HALIQDKVNFQRLGLVVIDEQHRFGVQQRAKLLAKGQSPHVLTMTATPIPRTLALTLHGD 563 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502 +D+S+I E P GR+PI+T + + + ++ +++G++AY I P IEE ++ + R+ Sbjct: 564 LDVSQIDELPPGRQPIQTTALIGKERTQAYDLIRREVAQGRQAYIIFPMIEESEKLDVRA 623 Query: 503 VVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560 VE L E +I ++HGRMS +K+ ++ +F++ +++++TTVIEVG+DV +A Sbjct: 624 AVEEHKKLSETVFPQFNIGLLHGRMSSSEKDEILTNFRDNKSQIIVSTTVIEVGVDVPNA 683 Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620 ++++IENAE FGL+QLHQLRGRVGRG S C+L+ + + +S RLSVL+ ++DGF I Sbjct: 684 TVMLIENAERFGLSQLHQLRGRVGRGSHQSYCLLMSNSK-TPDSRQRLSVLEQSQDGFFI 742 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 +E DL+ R G +LG +QSG+P F +A +LE+AR A+ IL D L Sbjct: 743 SEMDLRFRGPGTVLGTRQSGLPDFALASLVEDQEILELARSAAEKILIADSHL 795 >gi|227327133|ref|ZP_03831157.1| ATP-dependent DNA helicase RecG [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 693 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 254/688 (36%), Positives = 388/688 (56%), Gaps = 30/688 (4%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 M+ LN PLST GVG + L+++ ET DLL + P + DR + Sbjct: 1 MKGRLLN--TQPLSTLTGVGASQAAKLARL-----GLET-VQDLLLHLPLRYEDRTHLYP 52 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 I ++ T+ G I + + RR ++DG+G +T+ FF M KN G Sbjct: 53 IGDLLPGMYATVEGEILR-NDITFGSRRMLTCQISDGSGMLTMRFFNFSAAM-KNSLAPG 110 Query: 121 RKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEA 178 + +T G+IK+ K ++HP Y + +S V + VY G+ +K+ +A Sbjct: 111 QHVTAYGEIKRGKIGAEIIHPEYRVQGDSTQVELQESLTPVYPSTEGVRQATLRKLTDQA 170 Query: 179 LSRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS------PARERLAY 230 L+ L P E + + L +S S+ +A +H P D + + PA++RL Sbjct: 171 LALLDANPIDELLPESL--SRSLISLPDALRTLHRP--PPDMQLSELEHGKHPAQQRLIM 226 Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290 +ELLA +++L +R ++ P+ + + Q++L +PF PT++QE + +I DM++ Sbjct: 227 EELLAHNLSMLAVRAGEQRHKASPLQAQDGLKQRLLAALPFKPTQAQERVVAEIETDMAK 286 Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350 M+R++QGDVGSGKTLVA +A A+ G Q +MAP +LA+QH +++ + + Sbjct: 287 DFPMMRLVQGDVGSGKTLVAALAALRAIANGKQVALMAPTELLAEQHAHNFRQWFEPLGL 346 Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410 V + G R+ + IA GQ +++GTHA+FQ +++ L LVI+DEQHRFGV Q Sbjct: 347 EVGWLAGKQKGKARQAQQDAIASGQVSMVVGTHAIFQQQVKFNGLALVIIDEQHRFGVHQ 406 Query: 411 RLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466 RL L +K H L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP + Sbjct: 407 RLALWEKGEEQGFHAHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDS 466 Query: 467 RIDEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGR 524 R ++IER+ EG++AYW+C IEE ++ L + + ++HGR Sbjct: 467 RRSDIIERVNNACQQEGRQAYWVCTLIEESDLLEAQAAEATSEELKAALPNLKVGLVHGR 526 Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584 M +K++VM +FK G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVG Sbjct: 527 MKAQEKQAVMQAFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVG 586 Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644 RG S C+LLY P+SK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G +F Sbjct: 587 RGAVASHCVLLYKTPMSKTAQKRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGNAEF 646 Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPD 672 +A L+ ++ A+H+ P+ Sbjct: 647 KVADLLRDQELIPQVQRVARHLHEHYPE 674 >gi|325295454|ref|YP_004281968.1| ATP-dependent DNA helicase RecG [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065902|gb|ADY73909.1| ATP-dependent DNA helicase RecG [Desulfurobacterium thermolithotrophum DSM 11699] Length = 818 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 257/714 (35%), Positives = 417/714 (58%), Gaps = 32/714 (4%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 + F P+ST +G+ KK L K+ + ET +D ++Y P + DR +S + Sbjct: 118 IKAFFQPISTIKGIKKKTVERLKKL-----SIET-ILDAIYYLPFRYEDRTTITPMSFLK 171 Query: 66 EERIVTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRK- 122 ++ + G + + K++ + + D TG +TL+F + + F K Sbjct: 172 PGQVFLVKGKVVNVLVIETSKKKKKILKVILYDKTGTVTLIFLQERVLNYYKMLFSKAKE 231 Query: 123 ----ITVTGKIKKLKNRIIMVHPHY-IFHNSQDV--NFPLIEAVYSLPTGLSVDLFKKII 175 + G +K+ MVHP IF ++ +I VY G+ +K I Sbjct: 232 LEKEVLAYGIVKREMGSYSMVHPEVEIFDKNRGKLEKLGVILPVYHSSEGIKQSTIRKDI 291 Query: 176 VEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP--RKAKDF-EWTSPARERLAYD 231 + R +P LPE++ ++LL++ SFP IA AF +H P A+D + +P+++R+ +D Sbjct: 292 GNIVKRVIPFLPEYLPQELLKRYSFPDIATAFWRVHFPFDEDAQDLLNFKTPSQKRVIFD 351 Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 EL Q+AL L +++ K E GI V+ ++ + + +PFS T +QE +++I++DM + Sbjct: 352 ELFLFQLALALHKQKIKGEKGIAFPVKKELVDEFKKALPFSLTNAQEKVLREIMEDMKKD 411 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351 M R++QGDVGSGKT+VA A A ++G Q +MAP ILA QH++ +++ + I Sbjct: 412 EPMNRLVQGDVGSGKTVVAAAAAFFAAKSGYQTAVMAPTEILANQHFKKFREFLKPFSIK 471 Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411 V ++TG+M + + I G +++GTHAL Q+++++ L L I+DEQHRFGV+QR Sbjct: 472 VGLLTGSMTKKEKETMYRAIKEGFIQVVVGTHALIQETVEFKNLGLAIIDEQHRFGVKQR 531 Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471 ++L +K P VL+MTATPIPRTL +T+ GD+DIS I E PAGRKPIKT I+ + D + Sbjct: 532 VELKKKGKLPDVLVMTATPIPRTLAMTAYGDLDISVIDELPAGRKPIKTKILFEDERDTL 591 Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-----SIAIIHGRMS 526 + L L + Y + P IEE ++ ++ E +H ++ S+ ++HG+M Sbjct: 592 VRFLLKELKMKNRVYIVYPLIEESEKLELKAATE----MHHYWEKKLKPYSVGLLHGKMK 647 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 +K+ +M+ FK G ++L++TTVIEVG+DV +A++++IE+AE FGLAQLHQLRGRVGRG Sbjct: 648 QEEKDEIMEKFKRGEYQVLVSTTVIEVGVDVPEATVMVIEHAERFGLAQLHQLRGRVGRG 707 Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646 S C L+ +S++S RL VL++T DGF IAE DL+ R GEI G +QSG+ F I Sbjct: 708 NRQSYCFLITKRSISEDSIKRLRVLESTNDGFKIAEADLQFRGPGEIFGTRQSGLGDFKI 767 Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 A +L+IAR++A+ ++ ++P+L + ++ L+ +++ E F F+ G Sbjct: 768 ADLRRDFEILKIAREEAQKLVERNPELEGL--NDLKELMR-FRFGEKFDFVEVG 818 >gi|167618758|ref|ZP_02387389.1| ATP-dependent DNA helicase RecG [Burkholderia thailandensis Bt4] Length = 729 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 249/662 (37%), Positives = 372/662 (56%), Gaps = 29/662 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D + E+ G + + +R+ L +D Sbjct: 56 TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 115 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 E+ L F +K + G+++ V G ++ + +VHP D + PL +A Sbjct: 116 AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPSV---KVVDEDAPLPQA 171 Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 VY G+S +K I AL+R P+ LP + + LQ PS+A+A I+H+P Sbjct: 172 LTPVYPSTAGVSQAYLRKAIDNALTRTPLPELLPPEVARAYLQPLDVPSLADAVRILHHP 231 Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IAQ 263 D + T PA R+ +DELLA Q++L ++ + + + ++ Sbjct: 232 GVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRARDDGASLSA 291 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 ++ +PF+ T +QE + +I D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q Sbjct: 292 RLYAALPFTLTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQ 351 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 A +MAP ILA+QH ++ + + + V + G++ +R ALE A G A ++IGTH Sbjct: 352 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKTKDKRAALEAAALGTARLVIGTH 411 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRT 434 A+ QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRT Sbjct: 412 AMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRT 471 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L +T D+D+S I E P GR PI T ++ R DEVI R++ G++ YW+CP IEE Sbjct: 472 LAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEE 531 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ VE + +L + ++HGR++ +K +VMD+F +LL+ATTVIEV Sbjct: 532 SETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEV 591 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+L+Y PLS RL ++ Sbjct: 592 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRE 651 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 T DGF IA DL+ R GE LG +QSG A E L+E AR A H++ PD+ Sbjct: 652 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAAHLIAGHPDV 711 Query: 674 TS 675 + Sbjct: 712 VA 713 >gi|113474931|ref|YP_720992.1| ATP-dependent DNA helicase RecG [Trichodesmium erythraeum IMS101] gi|110165979|gb|ABG50519.1| ATP-dependent DNA helicase RecG [Trichodesmium erythraeum IMS101] Length = 827 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 243/652 (37%), Positives = 385/652 (59%), Gaps = 23/652 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99 DLL+Y+P ID + I + VTI G I + + F K + IL L D TG Sbjct: 158 DLLYYYPRDHIDYARQVNIRNLEAGETVTIIGKIKRFNCFSSPKNKKLTILELTLTDSTG 217 Query: 100 EITLLFFY-------RKTEMLKNVFFE-GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV 151 +I + F+ + +M++ F+ G + +G +K+ K + +P +S+ Sbjct: 218 QIKISRFFAGPRFSNKGWQMMQKKFYPVGATVAASGLVKETKYGKNLDNPEIEVLDSEGS 277 Query: 152 NFPLIE-----AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206 I+ VY L G+ D+ ++ I + L + E + + L + + A Sbjct: 278 EIESIKIGRLVPVYPLTEGVEADVVRRAIFKILPKAENFSETLPEIFLNQYQLIDLKNAI 337 Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKI 265 IH P D + + AR RL +DE Q+ LL R+ Q K EIG+ + V GK+ +K Sbjct: 338 KNIHFP---IDRDCLAAARRRLVFDEFFYLQLGLLKRRQLQKKTEIGVALPVTGKLIKKF 394 Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 + +PF T +Q+ + +IL+D+ + M R++QGDVG+GKT+VA++A+ AAV+ G QA Sbjct: 395 YKLLPFQLTNAQKRVVNEILRDLQKPEPMKRLVQGDVGAGKTVVAVVAILAAVQVGYQAA 454 Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +MAP +LA+QHY+ + + + VE++TG+ A RR+ ++ G+ I++GTHAL Sbjct: 455 LMAPTEVLAEQHYDKLVTWFNLLHLPVELLTGSTKIAKRREIYSQLETGELPILVGTHAL 514 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445 QD++ ++KL LV++DEQHRFGV QR KL QK +PH L MTATPIPRTL LT GD+D+ Sbjct: 515 IQDTVNFHKLGLVVIDEQHRFGVHQRAKLQQKGESPHFLAMTATPIPRTLALTLHGDLDV 574 Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 S+I E P GR+PI+T + + + + ++ + +G++ Y + P +EE ++ + +S +E Sbjct: 575 SQIDELPPGRQPIQTTNLTGRQRKKAYDLIRREIVQGRQVYVVLPLVEESEKLDVKSAIE 634 Query: 506 RFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 L E I ++HGRMS +K+ V+ +F+N ++L++TTV+EVG+DV +A+++ Sbjct: 635 EHQKLAEKIFPEFQIGLLHGRMSSAEKDQVISTFRNNQTQILVSTTVVEVGVDVPNATVM 694 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623 +IENAE FGL+QLHQLRGRVGRG S C+L+ S ++ RL VL+ ++DGF IAE Sbjct: 695 LIENAERFGLSQLHQLRGRVGRGVHHSYCLLMRGAG-STDATERLKVLEQSQDGFFIAEM 753 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 D++ R G++LG KQSG+P F +A +LE+AR A ++ +D L S Sbjct: 754 DMRLRGPGQVLGTKQSGLPDFALASLVEDQEVLELARGAALQVMEKDESLNS 805 >gi|170728911|ref|YP_001762937.1| ATP-dependent DNA helicase RecG [Shewanella woodyi ATCC 51908] gi|169814258|gb|ACA88842.1| ATP-dependent DNA helicase RecG [Shewanella woodyi ATCC 51908] Length = 691 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 264/703 (37%), Positives = 390/703 (55%), Gaps = 36/703 (5%) Query: 10 FAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 P++ GV KK + L+K+ IN DLLF+ P + DR I+ + Sbjct: 6 LVPVTELNGVAKKMAERLAKLGINT-------VQDLLFHLPLRYEDRTQIYPIASLYPGS 58 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 TI I Q S ++R + D TG + L FF KN G I G+ Sbjct: 59 YGTIEAVI-QSSQIVQGRKRMMTCTVRDDTGSMVLRFFNFSMAQ-KNGLQNGTLIRAYGE 116 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEALSRLP--- 183 I++ K + ++HP Y + D + VY GL + K+ +ALS L Sbjct: 117 IRRGKQQPEIIHPEYKLVSEYDSAALSDTLTPVYPTTEGLKQASWIKLTDQALSLLENGG 176 Query: 184 ---VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAG 236 +LP ++ + L S+ EA ++H P + PA++RL +ELLA Sbjct: 177 LQELLPPQLQPNNL------SLKEALQLLHRPHTGVALFELEQGNHPAQQRLIQEELLAH 230 Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 +++L +R++ ++ I + G++ L+ +PF PT +Q+ DI +D+ + + M+R Sbjct: 231 NLSMLKLRQRSNQDNAISMPATGQLLNPFLKELPFKPTGAQQRVGADICRDLEKPSPMMR 290 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 ++QGDVGSGKTLVA +A A+E G Q +MAP +LA+QH ++ + + V + Sbjct: 291 LVQGDVGSGKTLVAALAALQAIENGYQVAMMAPTELLAEQHAINFSQWFEPLGLKVGWLA 350 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G + R ++L I G AH++IGTHA+FQD + + KL L+I+DEQHRFGV QRL L + Sbjct: 351 GKLKGKTRAQSLADIESGDAHMVIGTHAIFQDKVIFNKLALIIIDEQHRFGVHQRLGLRE 410 Query: 417 KATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 K + PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV + R EVI Sbjct: 411 KGISQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAVSDVRRSEVI 470 Query: 473 ERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530 ER++ V ++G++ YW+C I+E + ++ + L I ++HGRM +K Sbjct: 471 ERVRQAVTNDGRQVYWVCTLIDESEVLECQAAEDTAAELSIALAELKIGLVHGRMKSAEK 530 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 ++VM FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S Sbjct: 531 QAVMAEFKAGNLNLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSIAS 590 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 C+L+Y PLS+ + RL VL+ + DGF+IA++DL+ R GE+LG KQ+G+ IA Sbjct: 591 HCLLMYKAPLSQMATKRLGVLRQSNDGFIIAQKDLEIRGPGEVLGTKQTGVADMKIADLI 650 Query: 651 LHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693 SL+ +K A H++ Q PD +V G R L QY +A Sbjct: 651 RDQSLIPHIQKLAVHVMEQAPD--NVDGIVQRWLGEREQYVQA 691 >gi|319776734|ref|YP_004139222.1| ATP-dependent DNA helicase [Haemophilus influenzae F3047] gi|329123155|ref|ZP_08251725.1| DNA helicase RecG [Haemophilus aegyptius ATCC 11116] gi|317451325|emb|CBY87563.1| ATP-dependent DNA helicase [Haemophilus influenzae F3047] gi|327471710|gb|EGF17152.1| DNA helicase RecG [Haemophilus aegyptius ATCC 11116] Length = 693 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 256/678 (37%), Positives = 391/678 (57%), Gaps = 26/678 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI G N DLLF+ P + DR I+ + E+ T Sbjct: 10 PLTSLSGVGAAISNKLAKI---GIHN---LQDLLFHLPIRYEDRTRITPIANLRPEQYFT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G I Q +R + L+DGT +I L FF M +N F G ++ G++K+ Sbjct: 64 IEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVGVRVKAFGEVKR 121 Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + + HP Y + N+ V + +YS GL + +K+ +AL+ +L + Sbjct: 122 GRYMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQALA---LLDKVQ 178 Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242 ++L + P S+ EA ++H P E PA++RL ++ELLA +A+ Sbjct: 179 IAEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQK 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R ++ +P++ + + Q+ L + F PT +Q+ + DI QD+ + M+R++QGDV Sbjct: 239 VRLGTQQFSALPLHYQTDLKQRFLATLLFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A++ G Q +MAP ILA+QH +++ + I V + G + Sbjct: 299 GSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R+ LE+I G +++GTHALFQ+ +++ L LVI+DEQHRFGV QRL L +K Sbjct: 359 SRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRLMLREKGEKAG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T D+D S I E P GR PI TV++ R E++ R+K Sbjct: 419 FYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRTEIVMRVKNA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 ++E ++AYW+C I+E + ++ + L + +I ++HGRM +K+ VM Sbjct: 479 CVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMR 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FKN LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S C+L+Y Sbjct: 539 FKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PPL K S RL VL++++DGF+I+E+DL+ R GE+LG KQ+G+ + +A ++ Sbjct: 599 KPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRVANLMRDRKMI 658 Query: 657 EIARKDAKHILTQDPDLT 674 + AK ++ + PD+ Sbjct: 659 PTVQHYAKSLIQKYPDVA 676 >gi|161505719|ref|YP_001572831.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867066|gb|ABX23689.1| hypothetical protein SARI_03895 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 693 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 254/676 (37%), Positives = 377/676 (55%), Gaps = 28/676 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI DLL + P + DR + I E+ T Sbjct: 10 PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPALQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q S+ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ P++ + ++L ++PF+PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRYHAQPLSTNDTLKHQLLASLPFNPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIVHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +++GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARVTQQEAIASGQVQMVVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R E+I R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRPEIINRVRN 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 +E ++AYW+C IEE ++ + L +I ++HGRM +K++VM Sbjct: 478 ACTTEDRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 RFKQGEMHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAI 657 Query: 656 LEIARKDAKHILTQDP 671 + ++ A+HI + P Sbjct: 658 IPEVQRIARHIHERYP 673 >gi|302392174|ref|YP_003827994.1| ATP-dependent DNA helicase RecG [Acetohalobium arabaticum DSM 5501] gi|302204251|gb|ADL12929.1| ATP-dependent DNA helicase RecG [Acetohalobium arabaticum DSM 5501] Length = 793 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 247/689 (35%), Positives = 395/689 (57%), Gaps = 23/689 (3%) Query: 17 RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76 +GVGKK + L+++ + R D+LFY P + D I E+S + VT TG + Sbjct: 117 KGVGKKRAEKLARL----EIDTLR--DMLFYIPRDYRDWSKNLPIRELSPDSEVTATGQV 170 Query: 77 SQHSSFQLQKRRPY---KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133 S +L+ R+ K++++D TG + ++F + +K F G ++ +G++K+ Sbjct: 171 V--DSTELRPRKGLTITKVIISDNTGRLAGVWFNQS--YIKQKFKPGMAVSFSGEVKQEY 226 Query: 134 NRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEK 191 + + HPHY I + ++++ I VYS GLS +L +KI+ L L PE + Sbjct: 227 GELQITHPHYEIMDSDKELDPGKILPVYSTTQGLSQNLLRKIVSRILKEHLDRFPESLSP 286 Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF-KKE 250 + K + EA IH P + ++ AR+RLA+ EL Q+ +LL + +E Sbjct: 287 GIKDKYDLLDVKEALYKIHFPDQIRE---VKEARQRLAFGELFILQLGILLKKTDLLTEE 343 Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310 G+ ++ L ++PF T +Q +I ++ M R++QGDVGSGKT+VA Sbjct: 344 EGLVHTGSDELITNFLSDLPFELTSAQRRVWAEIKDNLESSIVMNRLVQGDVGSGKTVVA 403 Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370 +A+ AV +G Q +MAP ILA+QHY +K+ + + + ++ G++ ++ R++ + Sbjct: 404 TLALLKAVSSGYQGAMMAPTEILAEQHYLSLKESLEEYGLQIGLLVGSLKKSERKEVIAG 463 Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430 I G+ I+IGTHAL Q+ + + KL LVI DEQHRFGV+QR L +K P VL+MTATP Sbjct: 464 IESGEVDIVIGTHALLQEEVSFAKLGLVITDEQHRFGVRQRAILKEKGENPDVLVMTATP 523 Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490 IPRTL LT GD+D+S I E P GRKP+ T D++ + ++ + G++AY +CP Sbjct: 524 IPRTLALTLYGDLDLSVIDELPPGRKPVITEWRREKDFDKIFDFIRQEVKSGRQAYIVCP 583 Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548 +EE +E + RS L E I ++HG++ +KE+VM+ F++ +L++T Sbjct: 584 LVEESEELDVRSAENMAEKLDEDIFPEFKIGLLHGQLKTDEKEAVMEGFRSQQIDILVST 643 Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608 TVIEVG+DV +A++++I +A+ FGLAQLHQLRGRVGR E S CIL+ P ++ R+ Sbjct: 644 TVIEVGVDVANATLMVILDAQRFGLAQLHQLRGRVGRSEYQSYCILVADPG-TETGRERM 702 Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668 ++ + DGF+IAEEDL+ R GE G +Q G+P +A L+E+ARK+A+ ++ Sbjct: 703 KIMTQSTDGFVIAEEDLQLRGPGEFFGTRQHGLPDLEVADLLRDSRLVELARKEARKVVD 762 Query: 669 QDPDLTSVRGQSIRILLYLYQYNEAFQFI 697 DP L Q + LL ++ + F+ I Sbjct: 763 SDPKLQQEEHQLLADLLQ-AKFGDGFELI 790 >gi|268317690|ref|YP_003291409.1| ATP-dependent DNA helicase RecG [Rhodothermus marinus DSM 4252] gi|262335224|gb|ACY49021.1| ATP-dependent DNA helicase RecG [Rhodothermus marinus DSM 4252] Length = 700 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 252/713 (35%), Positives = 393/713 (55%), Gaps = 34/713 (4%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 LN L + GVG + + L+++ + R DLL Y P ++DR + + Sbjct: 4 LNILSTEVRYLAGVGPRRAEVLARV----GVHTVR--DLLHYFPRRYLDRSTIVPLRRL- 56 Query: 66 EERI--VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123 +ER+ VT+ G + + + R+ ++++L D +G ++ + + F G ++ Sbjct: 57 DERMGSVTVVGTVRVAGVVEGKGRKRFELILEDESGGRLKCVWFNRLNWVAKAFKPGDRV 116 Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLP-------TGLSVDLFKKIIV 176 GK+++ M HP + + + + P GL+ F++I+ Sbjct: 117 AFHGKVQRFGYTFSMTHPDFDRLDGEGAALATGRIIALYPGGAALEKVGLTSRTFRRILY 176 Query: 177 EALS----RLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231 +LP +LPEWI + A +H PR + + ARERL ++ Sbjct: 177 TFFKQHGLKLPEILPEWIRT----RYGLMDGRVALRAVHFPRSQAEL---AQARERLKFE 229 Query: 232 ELLAGQIALLLMR-KQFKKEIGIP-INVEGKIAQKILRNI-PFSPTKSQESAIKDILQDM 288 EL I L+L R KQ ++ + P G+ + L I PF T +Q+ A++DI++D Sbjct: 230 ELFF--IQLMLARTKQIRQAVAGPRFGPPGERFHRFLNEILPFELTNAQKRALEDIIRDT 287 Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348 + +M R++QGDVGSGKT+VA+ A+ AV+ G Q+ M P ILA+QHY +++Y Sbjct: 288 TSGLQMNRLIQGDVGSGKTVVAMAAILHAVDNGYQSAFMVPTEILAEQHYANMRRYLDPL 347 Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408 + V ++ G ++ R + L +A G+AH+ +GTHA+ Q+++Q+++L L IVDEQHRFGV Sbjct: 348 GVEVRLLLGGQRKSLREEILADLAEGRAHVAVGTHAVIQETVQFHRLGLAIVDEQHRFGV 407 Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468 QR +L K PH+LLMTATPIPR+L +T GD+D+S I E+PAGRKP+ T I R Sbjct: 408 VQRAELFSKGENPHMLLMTATPIPRSLAMTLYGDLDVSIIDERPAGRKPVITWIRSEKRR 467 Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSD 527 EV L+ L +G++AY + P +EE ++ + + + L E F + +IHGRM Sbjct: 468 GEVYAFLREQLRQGRQAYVVYPLVEESEKMDLQDAENGYRRLKELFRPYRVDLIHGRMLP 527 Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587 +KE M+ FKNG +L+ATTVIEVG+DV +A+++IIE+AE FGL+QLHQLRGRVGRG Sbjct: 528 YEKEEAMERFKNGETDILVATTVIEVGVDVPNATVMIIEHAERFGLSQLHQLRGRVGRGA 587 Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 E S CIL+ + + RL V+ T+DGF I+E DLK R G+ G +QSG+P IA Sbjct: 588 EQSYCILMVDHRRTAEAEERLRVMAETDDGFKISEMDLKLRGAGDFFGTRQSGLPDLKIA 647 Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 +L AR+ A ++ +DP+L + +R + + F R G Sbjct: 648 DITQDQPILIKAREAAFELIRRDPNLEAPEHAMLRAYYDRFYATRSLGFARVG 700 >gi|253987679|ref|YP_003039035.1| ATP-dependent DNA helicase RecG [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638586|emb|CAR67206.1| atp-dependent dna helicase recg (ec 3.6.1.-) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779129|emb|CAQ82289.1| ATP-dependent DNA helicase RecG [Photorhabdus asymbiotica] Length = 706 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 258/686 (37%), Positives = 391/686 (56%), Gaps = 46/686 (6%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG + L+K+ G N DLL + P + D+ I+++ T Sbjct: 23 PLTSLHGVGASQAAKLAKM---GLIN---LQDLLLHFPLRYEDQTRLYTINDLLPGISAT 76 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 +TG I H++ +RR ++DGTG +TL FF M KN +G+++ G+I++ Sbjct: 77 VTGEIL-HTNIIFGRRRMMICQISDGTGVLTLRFFNFSAAM-KNNLAKGKQVVAYGEIRR 134 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRL------ 182 ++HP Y N L E +Y G+ +K+I +AL L Sbjct: 135 GSQGAEIIHPEYKIQTYAG-NVRLQETLTPIYPTTEGIRQATLRKLIEQALQLLDTCAIN 193 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDELLAGQI 238 +LPE + + ++ S+ +A + +H P D E PA RL +ELLA + Sbjct: 194 ELLPEELSRSMI------SLPQALHTLHRPTPDIVLADLETGKHPAHRRLILEELLAHHL 247 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 ++L ++ ++ + E K+ Q+ L +PF+PT +Q+ + +I QD+++ M+R++ Sbjct: 248 SMLEVKVGAQRYHAQSLPTENKLKQQFLNRLPFTPTNAQQRVVAEIEQDLAKDIPMMRLI 307 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKTLVA +A A+ G Q +MAP +LA+QH +++ + I + + G Sbjct: 308 QGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANTFRQWLEPLDIQIGWLAGK 367 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R+K E IA GQ +I+GTHA+FQ+ +++ L LVI+DEQHRFGV QRL L +K Sbjct: 368 QKGKARQKQQEAIASGQVAMIVGTHAMFQEQVKFSGLALVIIDEQHRFGVHQRLALWEKG 427 Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R +EVI+R Sbjct: 428 REQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDTRREEVIKR 487 Query: 475 LK-VVLSEGKKAYWICPQIEEKK--ESNFRSVVERFNSLHEHFTSS-----IAIIHGRMS 526 +K L E ++AYW+C IE+ E+ V E T + + ++HGRM Sbjct: 488 IKNACLDENRQAYWVCTLIEDSDVLEAQAAQVTS------EELTLALPELKVGLVHGRMK 541 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 +K +VM++FK G +LL+ATTVIEVG+DV +AS++II+N E GLAQLHQLRGRVGRG Sbjct: 542 AAEKLAVMEAFKCGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRG 601 Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646 S C+LLY PLS + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F + Sbjct: 602 AIASHCVLLYKTPLSSTARIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 661 Query: 647 AQPELHDSLLEIARKDAKHILTQDPD 672 A +L ++ A+HI + P+ Sbjct: 662 ADLLRDQGMLPEVQRIARHIHQRYPE 687 >gi|319898189|ref|YP_004136386.1| ATP-dependent DNA helicase [Haemophilus influenzae F3031] gi|317433695|emb|CBY82083.1| ATP-dependent DNA helicase [Haemophilus influenzae F3031] Length = 693 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 256/678 (37%), Positives = 391/678 (57%), Gaps = 26/678 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI G N DLLF+ P + DR I+ + E+ T Sbjct: 10 PLTSLSGVGAAISNKLAKI---GIHN---LQDLLFHLPIRYEDRTRITPIANLRPEQYFT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G I Q +R + L+DGT +I L FF M +N F G ++ G++K+ Sbjct: 64 IEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVGVRVKAFGEVKR 121 Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + + HP Y + N+ V + +YS GL + +K+ +AL+ +L + Sbjct: 122 GRYMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQALA---LLDKVQ 178 Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242 ++L + P S+ EA ++H P E PA++RL ++ELLA +A+ Sbjct: 179 IAEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQK 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R ++ +P++ + + Q+ L + F PT +Q+ + DI QD+ + M+R++QGDV Sbjct: 239 VRLGTQQFSALPLHYQTDLKQRFLATLLFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A++ G Q +MAP ILA+QH +++ + I V + G + Sbjct: 299 GSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R+ LE+I G +++GTHALFQ+ +++ L LVI+DEQHRFGV QRL L +K Sbjct: 359 SRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRLMLRKKGEKAG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T D+D S I E P GR PI TV++ R E++ R+K Sbjct: 419 FYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRTEIVMRVKNA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 ++E ++AYW+C I+E + ++ + L + +I ++HGRM +K+ VM Sbjct: 479 CVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMR 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FKN LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S C+L+Y Sbjct: 539 FKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PPL K S RL VL++++DGF+I+E+DL+ R GE+LG KQ+G+ + +A ++ Sbjct: 599 KPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRVANLMRDRKMI 658 Query: 657 EIARKDAKHILTQDPDLT 674 + AK ++ + PD+ Sbjct: 659 PTVQHYAKSLIQKYPDVA 676 >gi|134294797|ref|YP_001118532.1| ATP-dependent DNA helicase RecG [Burkholderia vietnamiensis G4] gi|134137954|gb|ABO53697.1| ATP-dependent DNA helicase RecG [Burkholderia vietnamiensis G4] Length = 783 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 244/661 (36%), Positives = 373/661 (56%), Gaps = 27/661 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI-SQHSSFQLQKRRPYKILLNDG 97 TR IDL+ + P + D I E+ I G + +++ +++ KI +DG Sbjct: 110 TRSIDLVLHLPMRYEDETTLTPIDELLPGGIAQTEGVVFDNEVAYRPRRQLVVKIRDDDG 169 Query: 98 TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LI 156 ++ L F +K + G+++ V G ++ + MVHP + D P ++ Sbjct: 170 A-QLVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGMEMVHPAVRVVEA-DAPLPQVL 226 Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213 VY G+S +K I A+ R P+ LP IE+D L+ P++A+A I+H+P Sbjct: 227 TPVYPSTAGVSQAYLRKAIENAVERTPLPELLPPEIERDYLKPLGVPTLAQAVRILHHPG 286 Query: 214 KAKD----FEWTSPARERLAYDELLAGQIALLLM--RKQFKKEIGIP---INVEGKIAQK 264 D + + PA R+ ++ELLA Q++L ++ + +P + G + + Sbjct: 287 VDSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRSAPAMPRRAADDAGSLTTR 346 Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324 + +PF+ T +Q + +I D++ + M R+LQGDVGSGKT+VA +A A++AG QA Sbjct: 347 LYAALPFTLTGAQSRVVDEIAHDLTLPHPMQRLLQGDVGSGKTVVAALAATQAIDAGYQA 406 Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384 +MAP ILA+QH ++ + + + V + G++ +R A+E A G A ++IGTHA Sbjct: 407 ALMAPTEILAEQHARKLRAWLEPLGVSVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTHA 466 Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTL 435 + QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRTL Sbjct: 467 IIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAANGARDFQPHQLMMSATPIPRTL 526 Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495 +T D+++S I E P GR P+ T ++ R EVI R++ G++ YW+CP IEE Sbjct: 527 AMTYYADLEVSTIDELPPGRTPVLTRLVADARRGEVIARVREAALTGRQVYWVCPLIEES 586 Query: 496 KESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554 + ++ VE + +L + ++HGR+S DK +VMD+F +LL+ATTVIEVG Sbjct: 587 ETLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMDAFTRNDVQLLVATTVIEVG 646 Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614 +DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+LLY PLS RL ++ T Sbjct: 647 VDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYSGPLSLAGRERLKTMRET 706 Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 DGF IA DL+ R GE LG +QSG A E L++ AR A ++ PD+ Sbjct: 707 TDGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLIDPARDAASRLIAAYPDVV 766 Query: 675 S 675 + Sbjct: 767 T 767 >gi|238918011|ref|YP_002931525.1| ATP-dependent DNA helicase RecG [Edwardsiella ictaluri 93-146] gi|238867579|gb|ACR67290.1| ATP-dependent DNA helicase RecG, putative [Edwardsiella ictaluri 93-146] Length = 693 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 251/681 (36%), Positives = 383/681 (56%), Gaps = 38/681 (5%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG + L+K+ DLL + P + DR +I E+ VT Sbjct: 10 PLTSLSGVGASQAGKLAKL------GLVTIQDLLLHLPLRYEDRTRLYRIGELQPGITVT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + +RR ++DG+G +TL FF M KN G+++ G+IK+ Sbjct: 64 VEGEVLR-TDVAFGRRRMLTSQISDGSGLLTLRFFNFSAAM-KNSLAPGKRVLAYGEIKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLPV--LP 186 + ++HP Y D L EA VY G+ +K+ +AL+ L + +P Sbjct: 122 GHHGAEIIHPEYRIQGD-DAAPALQEALTPVYPTTEGVRQATLRKLSDQALALLDITPIP 180 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNP----RKAKDFEWTSPARERLAYDELLAGQIALLL 242 E + + L Q S+ EA + +H P + + PA+ RL +ELLA +++L Sbjct: 181 ELLPESLGQ--GLISLPEALHTLHRPPPDIHQEDLAQGRHPAQRRLILEELLAHHLSMLA 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R ++ + + + + + L +PF+PT +Q + DI +DM++ M+R++QGDV Sbjct: 239 VRADNQRHRALALATDDHLKHRFLAALPFTPTTAQRRVLDDIEKDMAKSVPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 G GKTLVA +A A+ G Q +MAP +LA+QH +++ + V + G Sbjct: 299 GCGKTLVAALAALRAIAHGHQVALMAPTELLAEQHATNFRQWFAPLGLSVGWLAGKQKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R+ + IA G+ +++GTHALFQ+ +Q+ L LVI+DEQHRFGV QRL L +K A Sbjct: 359 ARQTQMAAIAAGEVDMVVGTHALFQEQVQFADLALVIIDEQHRFGVHQRLALWEKGEAQG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV I R ++++R++ Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIADTRRQQILDRVRHA 478 Query: 478 VLSEGKKAYWICPQIEEKK-------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530 L E ++AYW+C IEE E +++++ L IA++HGRM DK Sbjct: 479 CLEEKRQAYWVCTLIEESDLLEAQAAEVTAETLIQQLPELR------IALVHGRMKATDK 532 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 + VM FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S Sbjct: 533 QRVMAQFKAGEVDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAIAS 592 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 C+LLY PLS+ + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G +F +A Sbjct: 593 HCVLLYKSPLSQTAQRRLQVLRDSNDGFVIAQRDLEIRGPGEMLGTRQTGNAEFRVADLL 652 Query: 651 LHDSLLEIARKDAKHILTQDP 671 +L+ ++ A+H+ + P Sbjct: 653 RDQALIPEVQRIARHLHSAYP 673 >gi|301170495|emb|CBW30102.1| ATP-dependent DNA helicase [Haemophilus influenzae 10810] Length = 693 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 256/678 (37%), Positives = 390/678 (57%), Gaps = 26/678 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI G N DLLF+ P + DR I+ + E+ T Sbjct: 10 PLTSISGVGAAISNKLAKI---GIQN---LQDLLFHLPIRYEDRTRITPIANLRPEQYFT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G I Q +R + L+DGT +I L FF M +N F G ++ G++K+ Sbjct: 64 IEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQAGVRVKAFGEVKR 121 Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 ++ + HP Y + N+ V + +Y GL + +K+ +AL+ +L + Sbjct: 122 GRHMPEIHHPEYQIVRDNAPIVLEETLTPIYPTTEGLKQNSLRKLTDQALA---LLDKVQ 178 Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242 ++L + P S+ EA ++H P E PA+ RL ++ELLA +A+ Sbjct: 179 IAEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQLRLIFEELLAHNLAMQK 238 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R ++ +P++ + + + L +PF PT +Q+ + DI QD+ + M+R++QGDV Sbjct: 239 VRLGTQQFSALPLHYQTDLKLRFLATLPFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVA +A A++ G Q +MAP ILA+QH +++ + I V + G + Sbjct: 299 GSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420 R+ LE+I G +++GTHALFQ+ +++ L LVI+DEQHRFGV QRL L +K Sbjct: 359 SRQAELEKIKTGTVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRLMLREKGEKAG 418 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477 PH L+MTATPIPRTL +T D+D S I E P GR PI TV++ R E++ R+K Sbjct: 419 FYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRAEIVMRVKNA 478 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 ++E ++AYW+C I+E + ++ + L + +I ++HGRM +K+ VM Sbjct: 479 CVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMR 538 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FKN LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S C+L+Y Sbjct: 539 FKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMY 598 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 PPL K S RL VL++++DGF+I+E+DL+ R GE+LG KQ+G+ + IA ++ Sbjct: 599 KPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRIANLMRDRKMI 658 Query: 657 EIARKDAKHILTQDPDLT 674 + AK ++ + PD+ Sbjct: 659 PTVQHYAKSLIQKYPDVA 676 >gi|289209171|ref|YP_003461237.1| ATP-dependent DNA helicase RecG [Thioalkalivibrio sp. K90mix] gi|288944802|gb|ADC72501.1| ATP-dependent DNA helicase RecG [Thioalkalivibrio sp. K90mix] Length = 687 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 249/673 (36%), Positives = 373/673 (55%), Gaps = 42/673 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDR-------HYRPKI 61 L PL+ F+GVG + L+++ + R DLL + P F DR RP + Sbjct: 3 LQTPLTGFKGVGPAVAERLARL----GLEQAR--DLLLHLPLRFEDRTRLTPIRALRPGL 56 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 S + E R+ H+ ++RR + L + I L FF+ + + G Sbjct: 57 SALFEGRVT--------HAEVVHRRRRMLVVTLEEDGASILLRFFHFGSGQQRR-LSPGT 107 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA----VYSLPTGLSVDLFKKIIVE 177 +I G+ + + + VHP ++ P++E +Y G+S L ++++ E Sbjct: 108 RIRAFGEPRGMPGAMECVHPELQVVGTKP---PVLETHLTPIYPTTEGISQKLLRQLVTE 164 Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF-------EWTSPARERLAY 230 AL LP+ + + L ++ P + A +H+P + E PAR RLA Sbjct: 165 ALPTTEQLPDLLPE--LNQRQLPGLHTALQQLHHPPARAEVLDALDTAEQRGPARTRLAL 222 Query: 231 DELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289 +EL A Q+A + + + P I G + +++ +PF+PT +QE I ++ +D++ Sbjct: 223 EELTAHQLARMEQNRTPQDARRAPVIRPAGALWRQLRDQLPFAPTSAQERVIHEVREDLA 282 Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349 + M R++QGDVGSGKTLVA+ A AAVEAG Q MAP +LA+QH + ++ + Sbjct: 283 RPTPMNRLVQGDVGSGKTLVAVAAALAAVEAGHQVAFMAPTELLARQHGRNLAQWLEPLG 342 Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409 + V + G + R + L +A G + IGTHALFQ+ +++++L L I+DEQHRFGV Sbjct: 343 VSVAWLGGRQGASERGQLLSELASGHRQVAIGTHALFQEEVRFHRLGLAIIDEQHRFGVH 402 Query: 410 QRLKLTQKATA--PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467 QR+ L K PH L+MTATPIPRTL + D+D S I E+P GR P++T +I R Sbjct: 403 QRMALRDKGNGQMPHQLIMTATPIPRTLAMALYADLDSSVIDERPPGRTPVRTALISHER 462 Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526 DEVI+R++ G +AYW+CP +EE ++ S L E SI + HGRM Sbjct: 463 RDEVIDRIRAACGSGTQAYWVCPLVEESEQLEAESAEATAERLREALPELSIGLAHGRMK 522 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 ++++VM+ F+ G LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG Sbjct: 523 GPERDTVMERFRAGALDLLVATTVIEVGVDVPNASLMIIENAERMGLSQLHQLRGRVGRG 582 Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646 S+C+LLY PPL + + RL ++ T+DGF IAE DL+ R GE+LG +Q+G F + Sbjct: 583 NTASACVLLYRPPLGETARERLEAMRRTDDGFEIAEVDLRLRGPGELLGTRQTGDRSFRV 642 Query: 647 AQPELHDSLLEIA 659 A LLE A Sbjct: 643 ADWSRDQDLLEEA 655 >gi|197286695|ref|YP_002152567.1| ATP-dependent DNA helicase RecG [Proteus mirabilis HI4320] gi|194684182|emb|CAR45643.1| ATP-dependent DNA helicase [Proteus mirabilis HI4320] Length = 695 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 247/653 (37%), Positives = 376/653 (57%), Gaps = 28/653 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+T GVG + L+KI DLL + P + D+ + IS++ T Sbjct: 10 PLTTLHGVGASQADKLAKI------GLVTVEDLLLHLPLRYEDQTHLYAISDLLPGIPAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 ++G I + + +R+ ++DG+G +TL FF T +KN +G+++ G+IK+ Sbjct: 64 VSGEILR-TEVNFGRRKMMTCQISDGSGILTLRFF-NFTAAMKNNLAQGKQVIAYGEIKR 121 Query: 132 LKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 ++HP Y I +V + +YS GL +K+I +AL+ +L Sbjct: 122 GSRGPEIIHPEYKIKVAGSEVKLQETLTPIYSTTEGLRQTSLRKLIEQALT---LLDTCA 178 Query: 190 EKDLLQKK---SFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242 +LL + P +A A +HNP F + PA++RL +ELLA + +L Sbjct: 179 INELLPDQFIYGLPPLATALRTLHNPPPDIAFAELEKGQHPAQKRLIIEELLAHNLGMLN 238 Query: 243 MRKQFKKEIGIPINVE--GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 R + P+ + + ++ L +PF+PT +Q+ + +I QD+ + M+R++QG Sbjct: 239 ARAGAQSYRAEPLLMPHGSTLREQFLATLPFTPTTAQQRVVNEIEQDLEKNYPMMRLIQG 298 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKTLVA ++ A+ G Q +MAP +LA+QH +K+ + I V + G Sbjct: 299 DVGSGKTLVAALSALRAIANGKQVALMAPTELLAEQHALTFRKWFEPFGIQVGWLAGKQK 358 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 R IA+G+ IIIGTHA+FQ+ ++++ L LVI+DEQHRFGV QRL L +K Sbjct: 359 GKAREAQQNAIANGEVSIIIGTHAIFQEQVKFHSLALVIIDEQHRFGVHQRLALWKKGEE 418 Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R +++IER++ Sbjct: 419 QGFHPHQLVMTATPIPRTLAMTAYADMDTSIIDELPPGRTPVTTVAIPDTRRNDIIERIR 478 Query: 477 VVLSE-GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 V SE ++AYW+C IE+ + ++ ++ L I ++HGRM +K++VM Sbjct: 479 VACSEENRQAYWVCTLIEDSEVLEAQAAQVIYDELTIALPEIKIGLVHGRMKPAEKQAVM 538 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 FK +LL+ATTVIEVG+DV +AS++II+N E GLAQLHQLRGRVGRG S C+L Sbjct: 539 ADFKENKLQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAVASHCVL 598 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 LY PL++ + RL VL+++ DGF+IA++DL+ R GE+LG KQ+G +F +A Sbjct: 599 LYKTPLTQTARLRLQVLRDSNDGFVIAQKDLEIRGPGELLGTKQTGNAQFKVA 651 >gi|260684132|ref|YP_003215417.1| ATP-dependent DNA helicase RecG [Clostridium difficile CD196] gi|260687791|ref|YP_003218925.1| ATP-dependent DNA helicase RecG [Clostridium difficile R20291] gi|260210295|emb|CBA64595.1| ATP-dependent DNA helicase [Clostridium difficile CD196] gi|260213808|emb|CBE05774.1| ATP-dependent DNA helicase [Clostridium difficile R20291] Length = 689 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 251/674 (37%), Positives = 391/674 (58%), Gaps = 18/674 (2%) Query: 5 FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64 +L L+ + +G+G K + L+K+ DLL+Y P F DR+ KI+++ Sbjct: 3 YLLDLYKDVQYVKGIGPKKADKLNKL------GIFTLKDLLYYFPRQFEDRNNLKKIAQL 56 Query: 65 SEERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123 + VTI IS ++F ++ KI + D TG L+FF + +KN F G I Sbjct: 57 EDGEKVTIKAVISSINTFSPKEGMTLTKIDVKDETGSAKLVFFNK--SYIKNTFRPGDSI 114 Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRL 182 V GK+KK N + + + + N VY L G++ II L + Sbjct: 115 LVFGKVKKKFNNLELTSCELEYLTNSPKNTCRFMPVYQLTYGVTNKEIMSIIRTVLEDKE 174 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 ++ E++ + +++K SI A IH+P + + A R+ ++ELL Q+ L + Sbjct: 175 LIIQEYMPQRIIEKYRLCSIDFAVRNIHSPSSKESLKI---ALYRIVFEELLILQLGLFV 231 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 + KE GI K +KI+ +PF TK+Q A+ +I+QDM+ + M R++QGDV Sbjct: 232 FKSGRNKEDGIKFET-SKDLKKIISALPFKLTKAQNRALDEIIQDMNLEKIMNRLVQGDV 290 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKT+VAL+A+A V G Q +MAP ILA QHY + + ++ I V ++ G++ + Sbjct: 291 GSGKTVVALLALANCVLNGYQGALMAPTEILAGQHYISLTESLKDFGINVGLLIGSLTKK 350 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 + LE+I + + I+IGTHAL +D +++ + LVI DEQHRFGV QR KL+ K P Sbjct: 351 QKDTVLEQIRNNEIDILIGTHALIEDKVEFNNIGLVITDEQHRFGVMQRSKLSLKGANPD 410 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL-KVVLSE 481 +L+MTATPIPRTL L GD+DIS I E P GR+PI+T+ I ++ D L + + Sbjct: 411 ILVMTATPIPRTLALILYGDLDISIIDELPPGRQPIETIAIEKSKRDRAYNNLVRREVES 470 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-SIAIIHGRMSDIDKESVMDSFKN 539 G++ Y +CP +EE + +S VE L E+F + ++HG+M +K+ VM+ FKN Sbjct: 471 GRQVYIVCPLVEESEAIEAKSAVELVEELRAEYFHDLRLGLLHGKMKSSEKDEVMERFKN 530 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 +L++TTVIEVG++V +A+++IIENAE FGLAQLHQLRGRVGRG S C+L+Y Sbjct: 531 KEIDILVSTTVIEVGVNVPNATLMIIENAERFGLAQLHQLRGRVGRGSHKSYCVLIYDSK 590 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 + R+++++ T DGF I+E+DL+ R GE G +Q G+P+ +A H +L++A Sbjct: 591 -TDVCRQRMAIMEETNDGFKISEKDLEIRGPGEFFGTRQHGLPELKVANLFKHIKILKLA 649 Query: 660 RKDAKHILTQDPDL 673 +++A++IL +D +L Sbjct: 650 QQEARYILGEDNNL 663 >gi|227355113|ref|ZP_03839524.1| ATP-dependent DNA helicase [Proteus mirabilis ATCC 29906] gi|227164900|gb|EEI49747.1| ATP-dependent DNA helicase [Proteus mirabilis ATCC 29906] Length = 695 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 247/653 (37%), Positives = 376/653 (57%), Gaps = 28/653 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+T GVG + L+KI DLL + P + D+ + IS++ T Sbjct: 10 PLTTLHGVGASQADKLAKI------GLVTVEDLLLHLPLRYEDQTHLYAISDLLPGIPAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 ++G I + + +R+ ++DG+G +TL FF T +KN +G+++ G+IK+ Sbjct: 64 VSGEILR-TEVNFGRRKMMTCQISDGSGILTLRFF-NFTAAMKNNLAQGKQVIAYGEIKR 121 Query: 132 LKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 ++HP Y I +V + +YS GL +K+I +AL+ +L Sbjct: 122 GSRGPEIIHPEYKIKVAGSEVKLQETLTPIYSTTEGLRQTSLRKLIEQALT---LLDTCA 178 Query: 190 EKDLLQKK---SFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242 +LL + P +A A +HNP F + PA++RL +ELLA + +L Sbjct: 179 INELLPDQFIYGLPPLATALRTLHNPPPDIAFAELEKGQHPAQKRLIIEELLAHNLGMLN 238 Query: 243 MRKQFKKEIGIPINVE--GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 R + P+ + + ++ L +PF+PT +Q+ + +I QD+ + M+R++QG Sbjct: 239 ARAGAQSYRAEPLLMPHGSTLREQFLATLPFTPTTAQQRVVNEIEQDLEKNYPMMRLIQG 298 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKTLVA ++ A+ G Q +MAP +LA+QH +K+ + I V + G Sbjct: 299 DVGSGKTLVAALSALRAIANGKQVALMAPTELLAEQHALTFRKWFEPFGIQVGWLAGKQK 358 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 R IA+G+ IIIGTHA+FQ+ ++++ L LVI+DEQHRFGV QRL L +K Sbjct: 359 GKAREAQQNAIANGEVSIIIGTHAIFQEQVKFHSLALVIIDEQHRFGVHQRLALWKKGEE 418 Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R +++IER++ Sbjct: 419 QGFHPHQLVMTATPIPRTLAMTAYADMDTSIIDELPPGRTPVTTVAIPDTRRNDIIERIR 478 Query: 477 VVLSE-GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 V SE ++AYW+C IE+ + ++ ++ L I ++HGRM +K++VM Sbjct: 479 VACSEENRQAYWVCTLIEDSEVLEAQAAQVIYDELTIALPEIKIGLVHGRMKPAEKQAVM 538 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 FK +LL+ATTVIEVG+DV +AS++II+N E GLAQLHQLRGRVGRG S C+L Sbjct: 539 ADFKENKLQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAMASHCVL 598 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 LY PL++ + RL VL+++ DGF+IA++DL+ R GE+LG KQ+G +F +A Sbjct: 599 LYKTPLTQTARLRLQVLRDSNDGFVIAQKDLEIRGPGELLGTKQTGNAQFKVA 651 >gi|319786302|ref|YP_004145777.1| ATP-dependent DNA helicase RecG [Pseudoxanthomonas suwonensis 11-1] gi|317464814|gb|ADV26546.1| ATP-dependent DNA helicase RecG [Pseudoxanthomonas suwonensis 11-1] Length = 687 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 245/655 (37%), Positives = 367/655 (56%), Gaps = 26/655 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ-HSSFQLQKRRPY-KILLNDGTGE 100 DL F P + DR I+++ + G + F + RP ++ + DG+ Sbjct: 19 DLWFLLPLRYEDRTRLTAIADLRSGEPAQVEGTVEAVERGF---RYRPMLRVAVGDGSHR 75 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEA 158 +L F+ F G ++ G + ++ + +VHP Y + +D ++ Sbjct: 76 TVVLRFFHFRAAQVAQFRPGVRLRCFGTPRPGQHGLEIVHPSYRVLAADEDPALGESLDP 135 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216 VY G+ +K+I +AL +LP E + P + E+ ++H P + Sbjct: 136 VYPSIEGVGPATLRKLIGQALEKLPPAEALELLPHGTPGLAGLPGLRESLLVLHRPAPGE 195 Query: 217 DFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272 D T PA+ RLA +ELLA + L R ++ ++ G++A+++ +PF+ Sbjct: 196 DLAALGAGTHPAQRRLALEELLAHHLGLRRQRLAQQQLRARALDGPGELARRLRAQLPFA 255 Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332 T +Q+ + + D+++ + M R++QGDVGSGKT+VA +A AVE GGQ + AP + Sbjct: 256 LTGAQQRVYQQVRADLARPSPMQRLVQGDVGSGKTVVAALAATLAVEQGGQVALAAPTEL 315 Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392 LA+QH ++ + + I V + G + R AL +A G A +++GTHAL Q+ + + Sbjct: 316 LAEQHLANLRAWLEPLGIRVAWLAGKVTGKARAAALADVASGAAQVVVGTHALMQEGVAF 375 Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKI 448 + L+LVIVDEQHRFGVQQRL L K A PH L+MTATPIPRTL +T+ D+D+S I Sbjct: 376 HDLVLVIVDEQHRFGVQQRLALRDKGPAHGHVPHQLVMTATPIPRTLAMTAYADLDVSAI 435 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--------F 500 E P GR P++TV + +R E++ER++V +EG++ YW+C IEE +E Sbjct: 436 DELPPGRTPVQTVAVSADRRPELVERIRVACAEGRQVYWVCTLIEEAEEPGKGQGPGLQA 495 Query: 501 RSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 ++ F L + ++HGRM K++ M +FK+G LL+ATTVIEVG+DV + Sbjct: 496 QAAERTFEQLTAQLPGVRVGLVHGRMKASGKQAAMRAFKDGHTDLLVATTVIEVGVDVPN 555 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619 AS++IIENAE GLAQLHQLRGRVGRG SSC+LLY PPLS + RL VL+ T DGF+ Sbjct: 556 ASLMIIENAERLGLAQLHQLRGRVGRGAAASSCVLLYQPPLSATARQRLDVLRRTGDGFV 615 Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 IAEEDLK R GE+LG +Q+G+ F IA LL + A +LT PD+ Sbjct: 616 IAEEDLKLRGPGELLGTRQTGLAAFRIADLARDADLLPKVHQLADRLLTSAPDVA 670 >gi|188578256|ref|YP_001915185.1| ATP-dependent DNA helicase RecG [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522708|gb|ACD60653.1| ATP-dependent DNA helicase RecG [Xanthomonas oryzae pv. oryzae PXO99A] Length = 717 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 258/708 (36%), Positives = 388/708 (54%), Gaps = 52/708 (7%) Query: 3 PSFLNPLFAPLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 PS APLS+ GVG K + F ++ I DL + P + DR I Sbjct: 9 PSLAVAGQAPLSSLPGVGPKVADKFAARGI-------LSVQDLWLHLPLRYEDRTRLTTI 61 Query: 62 SEISEERIVTITGYISQ-HSSFQLQKRRP-YKILLNDGT-GEITLLFFYRKTEMLKNVFF 118 +++ I G + F+ RP ++ ++D + G + L FF+ + + F Sbjct: 62 AQLQSGVPAQIEGRVDAVERGFRF---RPVLRVAVSDASHGTLVLRFFHFRAAQVAQ-FA 117 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIV 176 G ++ V G K +N +VHP Y + +D ++ VY + G+ +K+I Sbjct: 118 VGTRVRVFGTPKPGQNGWEIVHPSYRVLAPDEDAGLGDSLDPVYPVLEGVGPATLRKLIG 177 Query: 177 EALSRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPAR 225 +AL RLP + P W LQ + PS+ A I+H P D PA+ Sbjct: 178 QALERLPPEAALELLPPHW-----LQDEQLPSLRAALLIMHRPPVGTDPQQLLAGGHPAQ 232 Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285 +RLA +ELLA Q++L R ++ + G + Q++ R +PF T +Q+ + I Sbjct: 233 QRLAIEELLAHQLSLRRQRIALQRFHAPSLPGNGTLVQQLRRALPFQLTGAQQRVFEQIA 292 Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345 +D++Q MLR++QGDVGSGKT+VA +A AVE G Q + AP +LA+QH ++ + Sbjct: 293 RDLAQSWPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLNNLRDWL 352 Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405 + I + + G + R A+ +A GQA +++GTHAL Q+++ ++ L L I+DEQHR Sbjct: 353 EPLGIRIVWLAGKVTGKARAAAMADVASGQAQVVVGTHALMQEAVVFHDLALAIIDEQHR 412 Query: 406 FGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461 FGV QRL L K A PH L+MTATPIPRTL +++ D+D+S I E P GR P++T+ Sbjct: 413 FGVHQRLALRDKGAAAGSVPHQLVMTATPIPRTLAMSTYADLDVSAIDELPPGRTPVQTI 472 Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--------------FRSVVERF 507 ++ R E++ER++ +EG++AYW+C IEE +E ++ F Sbjct: 473 VLSAERRPELVERIRAACAEGRQAYWVCTLIEESEEPEKGARGQHGGPPRIEAQAAEVTF 532 Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 +L +A++HGRM +K+ M FK G LL+ATTVIEVG+DV +AS++IIE Sbjct: 533 EALSAQLPGVRVALVHGRMKPAEKQQAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIE 592 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626 NAE GLAQLHQLRGRVGRG SSC+LLY PLS + RL ++ T DGF+IAE+DL+ Sbjct: 593 NAERLGLAQLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLE 652 Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 R GE+LG +Q+G+ F IA LL + A+ +L + P++ Sbjct: 653 LRGPGELLGTRQTGLASFRIADLARDAGLLPRVQVLAERLLEEVPEIA 700 >gi|192362473|ref|YP_001983944.1| ATP-dependent DNA helicase RecG [Cellvibrio japonicus Ueda107] gi|190688638|gb|ACE86316.1| ATP-dependent DNA helicase RecG [Cellvibrio japonicus Ueda107] Length = 712 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 246/616 (39%), Positives = 363/616 (58%), Gaps = 29/616 (4%) Query: 84 LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143 L KRR + DGTG +TL F++ K G ++ V G+ ++ + M HP Y Sbjct: 88 LGKRRSLVCRVQDGTGTLTLRFYHFNNAQ-KQRLVAGARLRVFGETRRGAAGLEMYHPEY 146 Query: 144 IFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL------PVLPEWIEKDLL 194 F PL + +Y GL+ + + +AL+ L +LPE + + L Sbjct: 147 DFLAGAS-PLPLEQTLTPIYPATEGLTQPRLRSLAQQALTWLDKHPLRELLPETVRRRLN 205 Query: 195 QKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 Q ++A+A +H P + E P ++RLA++ELLA ++LLL+R++ + + Sbjct: 206 QC----TLADALRYLHQPPVGANVQQLLEGEHPYQQRLAFEELLAHHLSLLLLRRETQAD 261 Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310 + + + L+ + F T++Q+ + +I +D+++ MLR++QGDVGSGKT+VA Sbjct: 262 GAPRLRLTPALEHGFLKQLGFQLTRAQQRVVAEIAEDLAKPLPMLRLVQGDVGSGKTVVA 321 Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370 +A AAV +G QA +MAP ILA+QH K+ + I V +TG + RR LE Sbjct: 322 ALAALAAVASGKQAAVMAPTEILAEQHRLNFGKWLEPLGIQVGWLTGRLKSGERRYQLEM 381 Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------P 421 IA G A +++GTHALFQD++ + L LVI+DEQHRFGV QRL L++K P Sbjct: 382 IAAGTAQVVVGTHALFQDAVAFADLGLVIIDEQHRFGVHQRLSLSEKGQVDGALAGVVRP 441 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 H L+MTATPIPRTL +++ D+D S I E P GR P+ TV+I NR +EVIER+++ + Sbjct: 442 HQLIMTATPIPRTLAMSAYADLDCSVIDELPPGRTPVTTVVISDNRREEVIERVRLACEQ 501 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540 G++AYW+C IEE + ++ +SL + I ++HGR+ +KESVM FK G Sbjct: 502 GRQAYWVCTLIEESEALEAQAAQATADSLAQSLPQLRIGLVHGRLKLAEKESVMAGFKAG 561 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLY PL Sbjct: 562 ELDLLVATTVIEVGVDVANASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYGSPL 621 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S NS RL V++ + DGF IAE+DL R GE+LG +Q+G +F IA + LL + Sbjct: 622 SNNSRERLRVMRESSDGFYIAEQDLLLRGPGEVLGTRQTGDMQFKIADLQRDSHLLPDVK 681 Query: 661 KDAKHILTQDPDLTSV 676 A ++++ P ++ + Sbjct: 682 NAALLLMSEHPQVSQL 697 >gi|302879848|ref|YP_003848412.1| ATP-dependent DNA helicase RecG [Gallionella capsiferriformans ES-2] gi|302582637|gb|ADL56648.1| ATP-dependent DNA helicase RecG [Gallionella capsiferriformans ES-2] Length = 685 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 244/648 (37%), Positives = 368/648 (56%), Gaps = 24/648 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLL + P + D ++++ V + G I+ H+ + R+ L D E+ Sbjct: 25 DLLLHLPLRYEDETELVSLADVEPGETVQVQGVIT-HNEVLYKPRKILVCRLQDKEDELY 83 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162 L F +K + GR++ G+ + + MVHP + + + VY Sbjct: 84 LRFLNFYPSQIK-LLAVGRQVRAIGEARIGYFGLEMVHPKCRAVSDKTQLATSLTPVYPT 142 Query: 163 PTGLSVDLFKKIIVEALSRL-PV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPR----KA 215 GLS KK+I AL L P LPE +L + P ++ ++HNP Sbjct: 143 TAGLSQLTLKKLIANALEVLNPADPLPEKFRHNL----NLPGFFDSIRLLHNPTTDIAAC 198 Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275 + + A R+ +DELLA Q+++ + K+ + I + +G +L+ +PFS TK Sbjct: 199 TLADKSHAAWRRIKFDELLAQQLSMRVHHKERSRRIAPALPPQGHYTDSLLKILPFSLTK 258 Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 +Q+ +I D+++ + M R+L GDVGSGKT+VA +A A+E G Q +MAP ILA+ Sbjct: 259 AQQKVYAEISADLARPHPMQRLLLGDVGSGKTIVAALAALQAIENGYQVALMAPTEILAE 318 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 QHY + ++ I+ ++G++ + +R A E IA G+ + IGTHALFQ+ I ++KL Sbjct: 319 QHYLKLTEWLSPLGIVPVWLSGSLKKKDKRVAAELIASGETWLAIGTHALFQEQITFHKL 378 Query: 396 ILVIVDEQHRFGVQQRLKL----------TQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445 L IVDEQH+FGVQQRL L +K++ PH L+M+ATPIPRTL ++ D+D+ Sbjct: 379 GLAIVDEQHKFGVQQRLALHAKGKQPVAPDEKSSEPHQLMMSATPIPRTLAMSYYADLDV 438 Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 S I E P GR P+ T ++ R +EV ER++ G +AYW+CP I+E + ++ E Sbjct: 439 SVIDELPPGRTPVITKLVSDTRREEVFERVRAACMTGAQAYWVCPLIDESEVLQLQNAQE 498 Query: 506 RFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 F L + F + ++HG+M +K M +FK G +LL+ATTVIEVG+DV +AS+++ Sbjct: 499 TFELLTDTFPDLRVGLVHGKMESAEKVRTMSAFKAGELQLLVATTVIEVGVDVPNASLMV 558 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624 I++AE GLAQLHQLRGRVGRG S CILLYH PLS+ + TRL V+ DGF+IA++D Sbjct: 559 IDHAERMGLAQLHQLRGRVGRGSAQSLCILLYHKPLSELARTRLKVIFENTDGFVIAQQD 618 Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 L+ R GE+LG +QSG+ A E + LLE AR+ A +L+ PD Sbjct: 619 LQLRGPGELLGARQSGVAMLRFADIEADEDLLEHAREVADELLSDYPD 666 >gi|50118999|ref|YP_048166.1| ATP-dependent DNA helicase RecG [Pectobacterium atrosepticum SCRI1043] gi|49609525|emb|CAG72958.1| putative ATP-dependent DNA helicase [Pectobacterium atrosepticum SCRI1043] Length = 693 Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust. Identities = 255/692 (36%), Positives = 388/692 (56%), Gaps = 38/692 (5%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 M+ LN PLST GVG + L+++ ET DLL + P + DR + Sbjct: 1 MKGRLLN--TQPLSTLAGVGASQAAKLARL-----GLET-VQDLLLHLPLRYEDRTHLYP 52 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 I ++ T+ G I + + RR ++DG+G +T+ FF M KN G Sbjct: 53 IGDLLPGMYATVEGEILR-NDITFGSRRMLTCQISDGSGLLTMRFFNFSAAM-KNSLAPG 110 Query: 121 RKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEA 178 +++T G+IK+ K ++HP Y + +S V + VY G+ +K+ +A Sbjct: 111 QRVTAYGEIKRGKIGAEIIHPEYRVQGDSTQVELQESLTPVYPSTEGIRQATLRKLTDQA 170 Query: 179 LSRLP------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS------PARE 226 L L +LPE + + L+ S+ +A +H P D + + PA++ Sbjct: 171 LELLAANHIDELLPESLSRSLI------SLPDALRTLHRP--PPDMQLSELEHGKHPAQQ 222 Query: 227 RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQ 286 RL +ELLA +++L +R ++ P+ + + Q++L +PF+PT++QE + +I Sbjct: 223 RLIMEELLAHNLSMLAVRAGEQRHKASPLPTKDSLKQQLLAALPFTPTQAQERVVAEIET 282 Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346 DM + M+R++QGDVGSGKTLVA +A A+ G Q +MAP +LA+QH +++ + Sbjct: 283 DMKKDFPMMRLVQGDVGSGKTLVAALAALRAIANGKQVALMAPTELLAEQHVHNFRQWFE 342 Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 + V + G R+ + IA GQ +++GTHA+FQ +++ L LVI+DEQHRF Sbjct: 343 PLGLEVGWLAGKQKGKARQAQQDAIASGQVSMVVGTHAIFQQQVKFNGLALVIIDEQHRF 402 Query: 407 GVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462 GV QRL L +K PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV Sbjct: 403 GVHQRLALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVA 462 Query: 463 IPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAI 520 IP +R ++IER+ EG++AYW+C IEE ++ L + + + Sbjct: 463 IPDSRRSDIIERVNSACQQEGRQAYWVCTLIEESDLLEAQAAEATSEELKAALPNLKVGL 522 Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580 +HGRM +K +VM +FK G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLR Sbjct: 523 VHGRMKAQEKLAVMQAFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLR 582 Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 GRVGRG S C+LLY P+SK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G Sbjct: 583 GRVGRGAVASHCVLLYKTPMSKTAQKRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTG 642 Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 +F +A L+ + A+H+ P+ Sbjct: 643 NAEFKVADLLRDRDLIPQVHRVARHLHEHYPE 674 >gi|67924795|ref|ZP_00518195.1| ATP-dependent DNA helicase RecG [Crocosphaera watsonii WH 8501] gi|67853363|gb|EAM48722.1| ATP-dependent DNA helicase RecG [Crocosphaera watsonii WH 8501] Length = 821 Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust. Identities = 236/651 (36%), Positives = 382/651 (58%), Gaps = 25/651 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99 DLLFY+P ID + I + VTI G + + + F K + ++++L D TG Sbjct: 152 DLLFYYPRDHIDYARQVSICHLVAGETVTIVGTVKRCNCFTSPKNKKLSIFELILKDNTG 211 Query: 100 EITLLFFYRKT--------EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS--- 148 +I L F+ E K + G + +G +K+ + + + +P +S Sbjct: 212 QIKLNRFFAGARFTNRGWQERQKRFYPVGAVVAASGLVKQNRYGVTLENPEIEVLDSLGS 271 Query: 149 --QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206 + + VY L G+ DL +K I+ +L + + + + + L ++ + EA Sbjct: 272 SIDSLKIGRVFPVYPLTEGVGADLIRKAIIASLEAIKQIRDPLPRILREEYGLIGLKEAI 331 Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI--GIPINVEGKIAQK 264 N IH P E + AR RL +DE Q+ L R+Q +K+I +GK+ ++ Sbjct: 332 NNIHFPESP---ELLAHARRRLVFDEFFYLQLGFL-QRRQEQKQIHNSAVFTPQGKLIEQ 387 Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324 + +PFS T +Q+ I +IL+D++ M R++QGDVG+GKT+VA+ A+ AA+++ QA Sbjct: 388 FNQILPFSLTNAQQQVINEILEDLNSVTPMNRLVQGDVGAGKTIVAVFAILAALQSSYQA 447 Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384 +MAP +LA+QHY + + + VE++TG+ +A R + ++ G+ +++GTHA Sbjct: 448 ALMAPTEVLAEQHYRKLVPWFNQLYLPVELLTGSTKKAKREEIHRQLITGELPLLVGTHA 507 Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444 L QD + + KL LV++DEQHRFGVQQR KL K +PHVL MTATPIPRTL LT GD+D Sbjct: 508 LIQDPVNFQKLGLVVIDEQHRFGVQQRAKLLAKGKSPHVLTMTATPIPRTLALTLHGDLD 567 Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504 +S+I E P GR+ I+T + + + ++ +++G++ Y I P IEE ++ + ++ V Sbjct: 568 VSQIDELPPGRQAIQTTALTGKERTQAYDLIRREVAQGRQVYIIFPMIEESEKLDVKAAV 627 Query: 505 ERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 E L E +I ++HGRMS +K+ V+ +F++ +++++TTVIEVG+DV +A++ Sbjct: 628 EEHEKLSEKVFPDFNIGLLHGRMSSAEKDEVLTAFRDNEYQIIVSTTVIEVGVDVPNATV 687 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622 ++IENAE FGL+QLHQLRGRVGRG S C+L+ + ++ RLSVL+ ++DGF I+E Sbjct: 688 MLIENAERFGLSQLHQLRGRVGRGSHKSYCLLMSSSK-TPDAKQRLSVLEQSQDGFFISE 746 Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DL+ R G +LG +QSG+P F +A +LE+AR A+ I+ D +L Sbjct: 747 MDLRFRGPGTVLGTRQSGLPDFALASLVEDQEVLELARLAAEKIIVADKNL 797 >gi|322419244|ref|YP_004198467.1| ATP-dependent DNA helicase RecG [Geobacter sp. M18] gi|320125631|gb|ADW13191.1| ATP-dependent DNA helicase RecG [Geobacter sp. M18] Length = 769 Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust. Identities = 251/694 (36%), Positives = 396/694 (57%), Gaps = 44/694 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI-- 64 L P++ +GVG K + L+K I+ +A L+ P+ + DR +I+E+ Sbjct: 69 LKTPMTAIKGVGPKLADLLAKKGIVTVEDA--------LYLLPNRYEDRRQLKRIAELRP 120 Query: 65 --SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122 SE T+ +S + RR ++ ++ D TG + L +F+ + LK F GR+ Sbjct: 121 GNSEAFFATV---VSAEALTTKGGRRYFEAIVKDETGSLPLKWFHFHPQFLKKQFTPGRR 177 Query: 123 ITVTGKIKKLKNRIIMVHPHYIFH-NSQDV---------NFPLIEAVYSLPTGLSVDLFK 172 G + + + M HP + +D+ NF I VY L G+S + + Sbjct: 178 GIFIGDVSQFGFQREMHHPEVEWAAEGEDLEQVMARDPDNFGRILPVYPLTEGVSQKVMR 237 Query: 173 KIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARER 227 +I+ + + R L + ++LL++ S+ A H P + S A Sbjct: 238 RIMRDTVQRYSRYLKGSLPEELLRRHRLSSLPVAMREAHQPDPSGSIADLNNGRSEAHRS 297 Query: 228 LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287 LA+DEL Q+ L + ++ E GI V + +++L+ +PFS T +Q+ + +I +D Sbjct: 298 LAFDELFFLQLGLAMKKRGIALEDGISFKVTHRYTKELLKLLPFSLTGAQKRVLSEIKED 357 Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347 M + M R++QGDVG GKTLVAL+A VE Q IMAP +L++QHY I Y + Sbjct: 358 MIAPHPMHRLVQGDVGCGKTLVALMAALICVENDYQVAIMAPTELLSEQHYLNIHGYCER 417 Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407 I V ++T ++ + LE+IA GQ +++GTHA+ Q+ +++++L L I+DEQHRFG Sbjct: 418 LGISVALLTASV--KGKSDTLEKIASGQTRVVVGTHAVIQEKVEFHRLGLGIIDEQHRFG 475 Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467 V QR L +K + P +L+MTATPIPRTL +T GD+ +S I E P GR PI+T ++ +R Sbjct: 476 VVQRALLKKKGSNPDILVMTATPIPRTLSMTVFGDLSLSVIDELPPGRTPIETRMVRESR 535 Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI------AII 521 EV ++ + +G++AY I P +EE ++ + ++ V+ + EH + A++ Sbjct: 536 RLEVYSLVREEVQKGRQAYVIYPLVEESEKIDLKAAVQ----MAEHLARDVFPDLRLAVL 591 Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581 HGRMS +KE+VM SFK G +L+ATTVIEVGIDV +A+++++E+AE FGL+QLHQLRG Sbjct: 592 HGRMSAAEKEAVMKSFKAGETDILVATTVIEVGIDVPNATVMVVEHAERFGLSQLHQLRG 651 Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641 RVGRG E S CILL LS++ RL V+ + DGF+IAE DL+ R G+ LG +Q+G+ Sbjct: 652 RVGRGCERSRCILLAGDKLSEDGQKRLEVMVKSSDGFVIAEADLQIRGPGDFLGTRQAGL 711 Query: 642 PKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 P+ +A +LE ARK+A ++ +DP+L + Sbjct: 712 PELRVADILRDGGVLEQARKEAFALVERDPELVT 745 >gi|304413237|ref|ZP_07394710.1| ATP-dependent DNA helicase [Candidatus Regiella insecticola LSR1] gi|304284080|gb|EFL92473.1| ATP-dependent DNA helicase [Candidatus Regiella insecticola LSR1] Length = 697 Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust. Identities = 263/681 (38%), Positives = 388/681 (56%), Gaps = 32/681 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS+ GVG + L+KI ET DLL + P + DR + I+++ T Sbjct: 10 PLSSLTGVGASQAAKLTKI-----GLET-VQDLLLHLPLRYEDRTHLYHITDLLPGLTAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I G I S +R L+DG+G + L FF T M KN G+ I G++K+ Sbjct: 64 IAGKILS-SEISSGRRAMLTSRLDDGSGVVILRFFNFNTSM-KNSLSAGKHIVAYGEVKQ 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188 +N + ++HP Y ++ +D L + +Y+ GL + +I +AL+ +L + Sbjct: 122 GRNGLEIIHPEYRTYD-EDKGIRLQYSLTPIYTSTEGLRQSTLRNLINQALN---LLDTF 177 Query: 189 IEKDLLQKK---SFPSIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALL 241 +LL + SF S++ A + +H P D E PA+ RL +EL+A +++L Sbjct: 178 TVAELLPVEVCDSFVSLSTAIHTLHRPSADISLIDLEKGQHPAQRRLILEELVAHNLSML 237 Query: 242 LMR---KQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 R K ++ + P V + + L + F PT +Q+ + +I QD+ + M+R+ Sbjct: 238 AARAGTKDYQAQPLPPSTVSHDTLKARFLAALAFHPTHAQQRVVDEIEQDLLRTFPMMRL 297 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 +QGDVGSGKTLVA +A A+ G Q +MAP +LA+QH E +++ + I V + G Sbjct: 298 IQGDVGSGKTLVAALAALRAIAQGKQVALMAPTELLAEQHLETFRQWFEPLSISVGWLAG 357 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 R E +A GQ +++GTHA+FQ +++ KL LVI+DEQHRFGV QRL L +K Sbjct: 358 KQKGKIRLIQQEAVAKGQVSMVVGTHAIFQQQVRFSKLALVIIDEQHRFGVHQRLALWEK 417 Query: 418 ATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 PH L+MTATPIPRTL +T+ D+DIS I E P GR PI TV IP R D+VI+ Sbjct: 418 GKQQGFHPHQLIMTATPIPRTLAMTAYADLDISIIDELPPGRTPISTVAIPDTRRDDVIQ 477 Query: 474 RLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKE 531 R+K L EG++ YW+C IEE + ++ + L + +IHGRM+ +K+ Sbjct: 478 RIKHACLEEGRQVYWVCTLIEESELLEAQAAAVTYAELQATLVDVKLGLIHGRMTAQEKQ 537 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 +VM FK G +LLIATTVIEVG+DV +AS++II+N E GLAQLHQLRGRVGRG S Sbjct: 538 AVMQVFKQGELQLLIATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGSTASH 597 Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 C+LLY PL+K RL VL+ + DGF+IA+ DL+ R GE+LG +Q+G +F IA Sbjct: 598 CVLLYKTPLTKTVQMRLQVLRESNDGFVIAQRDLEIRGPGELLGTRQTGGTEFKIADLLR 657 Query: 652 HDSLLEIARKDAKHILTQDPD 672 ++L ++ A+H+ + P+ Sbjct: 658 DQNILPEVQRIARHLHQKYPE 678 >gi|84622705|ref|YP_450077.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366645|dbj|BAE67803.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 717 Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust. Identities = 257/708 (36%), Positives = 388/708 (54%), Gaps = 52/708 (7%) Query: 3 PSFLNPLFAPLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 PS APLS+ GVG K + F ++ I DL + P + DR I Sbjct: 9 PSLAVAGQAPLSSLPGVGPKVADKFAARGI-------LSVQDLWLHLPLRYEDRTRLTTI 61 Query: 62 SEISEERIVTITGYISQ-HSSFQLQKRRP-YKILLNDGT-GEITLLFFYRKTEMLKNVFF 118 +++ I G + F+ RP ++ ++D + G + L FF+ + + F Sbjct: 62 AQLQSGVPAQIEGRVDAVERGFRF---RPVLRVAVSDASHGTLVLRFFHFRAAQVAQ-FA 117 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIV 176 G ++ V G K +N +VHP Y + +D ++ VY + G+ +K+I Sbjct: 118 VGTRVRVFGTPKPGQNGWEIVHPSYRVLAPDEDAGLGDSLDPVYPVLEGVGPATLRKLIG 177 Query: 177 EALSRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPAR 225 +AL RLP + P W LQ + PS+ A +H P D PA+ Sbjct: 178 QALERLPPEAALELLPPHW-----LQDEQLPSLRAALLTMHRPPVGTDPQQLLAGGHPAQ 232 Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285 +RLA +ELLA Q++L R ++ + G + Q++ R +PF T +Q+ + I Sbjct: 233 QRLAIEELLAHQLSLRRQRIALQRFHAPSLPGNGTLVQQLRRALPFQLTGAQQRVFEQIA 292 Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345 +D++Q MLR++QGDVGSGKT+VA +A AVE G Q + AP +LA+QH ++ + Sbjct: 293 RDLAQSWPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLNNLRDWL 352 Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405 + I + + G + R A+ +A GQA +++GTHAL Q+++ ++ L L I+DEQHR Sbjct: 353 EPLGIRIVWLAGKVTGKARAAAMADVASGQAQVVVGTHALMQEAVVFHDLALAIIDEQHR 412 Query: 406 FGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461 FGV QRL L K A PH L+MTATPIPRTL +++ D+D+S I E P GR P++T+ Sbjct: 413 FGVHQRLALRDKGAAAGSVPHQLVMTATPIPRTLAMSTYADLDVSAIDELPPGRTPVQTI 472 Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--------------FRSVVERF 507 ++ R E++ER++ +EG++AYW+C IEE +E ++ F Sbjct: 473 VLSAERRPELVERIRAACAEGRQAYWVCTLIEESEEPEKGARGQHGGPPRIEAQAAEVTF 532 Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 +L +A++HGRM +K+ M FK G LL+ATTVIEVG+DV +AS++IIE Sbjct: 533 EALSAQLPGVRVALVHGRMKPAEKQQAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIE 592 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626 NAE GLAQLHQLRGRVGRG + SSC+LLY PLS + RL ++ T DGF+IAE+DL+ Sbjct: 593 NAERLGLAQLHQLRGRVGRGADASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLE 652 Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 R GE+LG +Q+G+ F IA LL + A+ +L + P++ Sbjct: 653 LRGPGELLGTRQTGLASFRIADLARDAGLLPRVQVLAERLLEEVPEIA 700 >gi|254976149|ref|ZP_05272621.1| ATP-dependent DNA helicase RecG [Clostridium difficile QCD-66c26] gi|255093539|ref|ZP_05323017.1| ATP-dependent DNA helicase RecG [Clostridium difficile CIP 107932] gi|255315282|ref|ZP_05356865.1| ATP-dependent DNA helicase RecG [Clostridium difficile QCD-76w55] gi|255517950|ref|ZP_05385626.1| ATP-dependent DNA helicase RecG [Clostridium difficile QCD-97b34] gi|255651066|ref|ZP_05397968.1| ATP-dependent DNA helicase RecG [Clostridium difficile QCD-37x79] gi|306520922|ref|ZP_07407269.1| ATP-dependent DNA helicase RecG [Clostridium difficile QCD-32g58] Length = 685 Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust. Identities = 244/636 (38%), Positives = 376/636 (59%), Gaps = 12/636 (1%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEI 101 DLL+Y P F DR+ KI+++ + VTI IS ++F ++ KI + D TG Sbjct: 31 DLLYYFPRQFEDRNNLKKIAQLEDGEKVTIKAVISSINTFSPKEGMTLTKIDVKDETGSA 90 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161 L+FF + +KN F G I V GK+KK N + + + + N VY Sbjct: 91 KLVFFNKS--YIKNTFRPGDSILVFGKVKKKFNNLELTSCELEYLTNSPKNTCRFMPVYQ 148 Query: 162 LPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220 L G++ II L + ++ E++ + +++K SI A IH+P + + Sbjct: 149 LTYGVTNKEIMSIIRTVLEDKELIIQEYMPQRIIEKYRLCSIDFAVRNIHSPSSKESLKI 208 Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280 A R+ ++ELL Q+ L + + KE GI K +KI+ +PF TK+Q A Sbjct: 209 ---ALYRIVFEELLILQLGLFVFKSGRNKEDGIKFET-SKDLKKIISALPFKLTKAQNRA 264 Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340 + +I+QDM+ + M R++QGDVGSGKT+VAL+A+A V G Q +MAP ILA QHY Sbjct: 265 LDEIIQDMNLEKIMNRLVQGDVGSGKTVVALLALANCVLNGYQGALMAPTEILAGQHYIS 324 Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400 + + ++ I V ++ G++ + + LE+I + + I+IGTHAL +D +++ + LVI Sbjct: 325 LTESLKDFGINVGLLIGSLTKKQKDTVLEQIRNNEIDILIGTHALIEDKVEFNNIGLVIT 384 Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460 DEQHRFGV QR KL+ K P +L+MTATPIPRTL L GD+DIS I E P GR+PI+T Sbjct: 385 DEQHRFGVMQRSKLSLKGANPDILVMTATPIPRTLALILYGDLDISIIDELPPGRQPIET 444 Query: 461 VIIPINRIDEVIERL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-S 517 + I ++ D L + + G++ Y +CP +EE + +S VE L E+F Sbjct: 445 IAIEKSKRDRAYNNLVRREVESGRQVYIVCPLVEESEAIEAKSAVELVEELRAEYFHDLR 504 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 + ++HG+M +K+ VM+ FKN +L++TTVIEVG++V +A+++IIENAE FGLAQLH Sbjct: 505 LGLLHGKMKSSEKDEVMERFKNKEIDILVSTTVIEVGVNVPNATLMIIENAERFGLAQLH 564 Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637 QLRGRVGRG S C+L+Y + R+++++ T DGF I+E+DL+ R GE G + Sbjct: 565 QLRGRVGRGSHKSYCVLIYDSK-TDVCRQRMAIMEETNDGFKISEKDLEIRGPGEFFGTR 623 Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 Q G+P+ +A H +L++A+++A++IL +D +L Sbjct: 624 QHGLPELKVANLFKHIKILKLAQQEARYILGEDNNL 659 >gi|296100479|ref|YP_003610625.1| ATP-dependent DNA helicase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295054938|gb|ADF59676.1| ATP-dependent DNA helicase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 693 Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust. Identities = 254/677 (37%), Positives = 377/677 (55%), Gaps = 28/677 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L KI DLL + P + DR KI ++ T Sbjct: 10 PLNSLTGVGAAQSSKLGKI------GLHTVQDLLLHLPLRYEDRTQLYKIGDLLPAIYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DGTG +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNITFGGRRMMTCQISDGTGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGIKQATLRKLTDQALELLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALL 241 E + +L Q S+ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 TELLAPELAQ--GMMSLPEALRTLHRPPPTLQLSDLESGKHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R + P++ ++ K+L ++PF PT +Q +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQHFHAQPLSPRDELKDKLLASLPFKPTGAQARVTAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRAWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R + IA G+ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQDAIARGEVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGLQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRRSDIIDRVRN 477 Query: 478 VLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 + EG++AYW+C IEE ++ + L + ++HGRM +K++VM Sbjct: 478 ACTHEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELKVGLVHGRMKPAEKQAVMQ 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 SFK G LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKAPLSKTAQMRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHILTQDPD 672 + ++ A+HI + P+ Sbjct: 658 IPEVQRLARHIHERYPE 674 >gi|163750716|ref|ZP_02157952.1| ATP-dependent DNA helicase RecG [Shewanella benthica KT99] gi|161329560|gb|EDQ00552.1| ATP-dependent DNA helicase RecG [Shewanella benthica KT99] Length = 691 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 264/699 (37%), Positives = 394/699 (56%), Gaps = 28/699 (4%) Query: 10 FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69 P++ +GV KK + L+K+ DLLF+ P + DR I+ + Sbjct: 6 LVPITDLKGVAKKMAERLAKL------GIHTIQDLLFHLPLRYEDRTQIYPIASLYPGTY 59 Query: 70 VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 TI I Q S ++R + D TG +TL FF KN G I G+I Sbjct: 60 GTIEAVI-QSSQIIQGRKRMMTCTVRDDTGYLTLRFFNFSVAQ-KNGLVNGMTIRAYGEI 117 Query: 130 KKLKNRIIMVHPHY-IFHNSQD-VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187 ++ K++ ++HP Y + H D V + VY GL + K+ +AL+ +L E Sbjct: 118 RRGKHQAEIIHPEYKLIHGDTDLVMSDTLTPVYPTTEGLKQASWIKLTDQALA---MLDE 174 Query: 188 WIEKDLLQKKSFP---SIAEAFNIIHNPR-KAKDFEWTS---PARERLAYDELLAGQIAL 240 ++LL + P S+ A ++H P + F+ PA++RL +ELLA +++ Sbjct: 175 GGLQELLPPQLQPNNLSLNAALQLLHRPNNQVSQFDLEQGHHPAQQRLIQEELLAHNLSM 234 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L +R++ ++ + + GK+ + L+ +PF PT +Q+ +I D+ + + M+R++QG Sbjct: 235 LKLRQRSNRDHAVSLAATGKLLKPFLKALPFKPTGAQQRVGVEICGDLEKSSPMMRLVQG 294 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKTLVA +A A+E G Q +MAP +LA+QH E + + + V + G + Sbjct: 295 DVGSGKTLVAALAALQAIENGYQVAMMAPTELLAEQHAENFALWFEPLGLKVGWLAGKLK 354 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 R ++L+ I G A+IIIGTHA+FQ+ + + L L+I+DEQHRFGV QRL L +K Sbjct: 355 GKARAQSLQDIESGAANIIIGTHAIFQEQVVFNNLALIIIDEQHRFGVHQRLSLREKGIK 414 Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV + R +EVIER++ Sbjct: 415 QGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAVADIRRNEVIERVR 474 Query: 477 -VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 +G++ YW+C IEE + ++ + L I +IHGRM +K+++M Sbjct: 475 HAATYDGRQTYWVCTLIEESEVLECQAAEDTAAELTLALPELKIGLIHGRMKSAEKKAIM 534 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 FK+G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+L Sbjct: 535 AEFKSGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVL 594 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 +Y PLS + RL VL+++ DGF+IA++DL+ R GE+LG KQ+G+ IA + Sbjct: 595 MYKAPLSPTATKRLGVLRSSNDGFIIAQKDLEIRGPGEVLGTKQTGIADMKIADLVRDQA 654 Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693 L+ +K A HI+ Q PD +V G R L QY +A Sbjct: 655 LIPHIQKLAVHIMEQVPD--NVDGIVQRWLGDREQYVQA 691 >gi|325927901|ref|ZP_08189125.1| ATP-dependent DNA helicase RecG [Xanthomonas perforans 91-118] gi|325541741|gb|EGD13259.1| ATP-dependent DNA helicase RecG [Xanthomonas perforans 91-118] Length = 717 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 253/708 (35%), Positives = 385/708 (54%), Gaps = 52/708 (7%) Query: 3 PSFLNPLFAPLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 PS A LS+ GVG K + F ++ I DL + P + DR I Sbjct: 9 PSLAVAGQARLSSLPGVGPKVADKFAARGI-------LSVQDLWLHLPLRYEDRTRLTTI 61 Query: 62 SEISEERIVTITGYISQ-HSSFQLQKRRP-YKILLNDGT-GEITLLFFYRKTEMLKNVFF 118 +++ + G + F+ RP ++ ++D + G + L FF+ + + F Sbjct: 62 AQLQGGVPAQVEGRVEAVERGFRF---RPVLRVAVSDASHGTLVLRFFHFRAAQVAQ-FA 117 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIV 176 G ++ V G K ++ +VHP Y + +D ++ VY + G+ +K+I Sbjct: 118 VGTRLRVFGTPKPGQHGWEIVHPSYRVLAPDEDAGLGDSLDPVYPVLEGVGPATLRKLIG 177 Query: 177 EALSRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPAR 225 +AL RLP + P W LQ + PS+ A +H P D PA+ Sbjct: 178 QALERLPPESALELLPPHW-----LQDERLPSLRAALLTMHRPPVGTDPQQLLAGGHPAQ 232 Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285 +RLA +ELLA Q++L R ++ + G + Q++ + +PF T +Q+ + I Sbjct: 233 QRLAIEELLAHQLSLRRQRIALQRLHAPSLPGNGTLVQQLCKALPFQLTGAQQRVFEQIA 292 Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345 D++Q + MLR++QGDVGSGKT+VA +A AVE G Q + AP +LA+QH ++ + Sbjct: 293 HDLAQPSPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLTNLRGWL 352 Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405 + I + + G + R + +A GQA +++GTHAL Q+++ ++ L L IVDEQHR Sbjct: 353 EPLGIRIVWLAGKVTGKARAAVMAEVASGQAQVVVGTHALMQEAVIFHDLALAIVDEQHR 412 Query: 406 FGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461 FGV QRL L K A PH L+MTATPIPRTL +++ D+D+S I E P GR P++T+ Sbjct: 413 FGVHQRLALRDKGAAAGSVPHQLVMTATPIPRTLAMSAYADLDVSAIDELPPGRTPVQTI 472 Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--------------FRSVVERF 507 ++ R E++ER++ +EG++AYW+C IEE +E ++ F Sbjct: 473 VLSAERRPELVERIRAACAEGRQAYWVCTLIEESEEPEKGAQGQQGGPPRIEAQAAEVTF 532 Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 +L +A++HGRM +K+ M FK G LL+ATTVIEVG+DV +AS++IIE Sbjct: 533 EALSAQLPGVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIE 592 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626 NAE GLAQLHQLRGRVGRG SSC+LLY PLS + RL ++ T DGF+IAE+DL+ Sbjct: 593 NAERLGLAQLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLE 652 Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 R GE+LG +Q+G+ F IA LL + A+ +L + P++ Sbjct: 653 LRGPGELLGTRQTGLASFRIADLARDAGLLPRVQVLAERLLDEAPEVA 700 >gi|282898565|ref|ZP_06306553.1| ATP-dependent DNA helicase RecG [Cylindrospermopsis raciborskii CS-505] gi|281196433|gb|EFA71342.1| ATP-dependent DNA helicase RecG [Cylindrospermopsis raciborskii CS-505] Length = 827 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 230/650 (35%), Positives = 385/650 (59%), Gaps = 23/650 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99 DLLFY+P +ID + I E+ VTI G + + + F K + IL L D TG Sbjct: 158 DLLFYYPRDYIDYARQVNIRELKGGETVTIIGEVRRCNCFTSPKNQKLSILELMLKDQTG 217 Query: 100 EITLLFFYRKT--------EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQD 150 ++ + FY + E LK + G + G +K + + + +P + NS D Sbjct: 218 QVKVSRFYAGSRFSSKGWQEGLKRRYTPGTLVAACGLVKPSRYGLTLDNPEIEVLANSGD 277 Query: 151 V--NFPL--IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206 +F + + +YSL G+ + ++ ++ L L + + L +K + + +A Sbjct: 278 AIDSFTIGRVVPIYSLTEGVVANTVRQAVMAVLPSAKSLQDPLPPGLRKKYNLIELKQAI 337 Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK-KEIGIPINVEGKIAQKI 265 IH P +D + AR RL +DE Q+ LL +KQ K + G + GK+ + Sbjct: 338 PNIHFP---QDSDTLKMARRRLVFDEFFYLQVGLLQRQKQAKANQTGAILAPSGKLLDQF 394 Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 +PF T +Q+ I DIL D+ + M R++QGDVGSGKT+VA++A+ A+++G QA Sbjct: 395 HEILPFKFTNAQQRVINDILNDLQKPTPMNRLVQGDVGSGKTVVAVVAILTAIQSGYQAA 454 Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +MAP +LA+QHY + + + VE++TG+ + RR+ ++ G+ +++GTHAL Sbjct: 455 LMAPTEVLAEQHYRKLVTWFNLLHLPVELLTGSTKTSKRREIHSQLETGELPLLVGTHAL 514 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445 QD +++++L LV++DEQHRFGV+QR KL QK PHVL MTATPIPRTL LT GD+D+ Sbjct: 515 IQDKVKFHRLGLVVIDEQHRFGVEQRAKLQQKGEQPHVLTMTATPIPRTLALTVHGDLDV 574 Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 S+I E P GR+ IKT ++ ++ + + ++ +++G++ Y + P +EE ++ + RS ++ Sbjct: 575 SQIDELPPGRQQIKTSLLTSHQRPQAYDLIRREIAQGRQVYVVLPLVEESEKLDLRSAID 634 Query: 506 RFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + L E T + ++HG+M+ +KE ++ F++ ++L++TTV+EVG+DV +A+++ Sbjct: 635 EYQKLQETVFPTFQVGLLHGKMTSAEKEEAINKFRDNQTQILVSTTVVEVGVDVPNATVM 694 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623 +IE+AE FGL+QLHQLRGRVGRG S C+L+ + ++ RL VL+ ++DGF I+E Sbjct: 695 LIEHAERFGLSQLHQLRGRVGRGMAQSYCLLM-SSSRNPDAQQRLKVLEQSQDGFFISEM 753 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 D++ R GE++G +QSG+ F +A + +L +AR+ A+ ++ D L Sbjct: 754 DMRFRGPGEVMGTRQSGVADFTLASLVEDEEVLLLARQAAEKVIDMDVSL 803 >gi|188990343|ref|YP_001902353.1| ATP-dependent DNA helicase RecG [Xanthomonas campestris pv. campestris str. B100] gi|167732103|emb|CAP50295.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris] Length = 713 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 256/705 (36%), Positives = 388/705 (55%), Gaps = 50/705 (7%) Query: 3 PSFLNPLFAPLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 PS APLS+ GVG K + F ++ I DL + P + DR I Sbjct: 9 PSLAVAGQAPLSSLPGVGPKVAEKFAARGI-------LSLQDLWLHLPLRYEDRTRLTTI 61 Query: 62 SEISEERIVTITGYI-SQHSSFQLQKRRP-YKILLNDGT-GEITLLFFYRKTEMLKNVFF 118 +++ I G + + F+ RP ++ ++D + G + L FF+ + + F Sbjct: 62 AQLQGGVPAQIEGRVEAMERGFRF---RPVLRVAMSDDSYGTLVLRFFHFRAAQVAQ-FS 117 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIV 176 G ++ V G K +N +VHP Y + +D ++ VY + G+ +K+I Sbjct: 118 PGTRLRVFGTPKPGQNGWEIVHPSYRVLAPDEDAGLGDCLDPVYPVLEGVGPATLRKLIG 177 Query: 177 EALSRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPAR 225 +AL RLP + P W LQ + PS+ A +H P D PA+ Sbjct: 178 QALERLPPEAALELLPPHW-----LQDEQLPSLRSALLTMHRPPVDTDPQQLLAGGHPAQ 232 Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285 +RLA +ELLA Q++L R ++ P G++ Q++ + +PF T +Q+ + I Sbjct: 233 QRLAIEELLAHQVSLRRQRIALQR-FRAPQLRGGRLVQQLRKALPFQLTGAQQRVFEQIA 291 Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345 D++Q MLR++QGDVGSGKT+VA +A AVE G Q + AP +LA+QH ++ + Sbjct: 292 HDLAQPAPMLRLVQGDVGSGKTVVAALAAMLAVEHGKQVALAAPTELLAEQHLANLRGWL 351 Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405 + + + + G + R A+ +A GQA +++GTHAL QD++ ++ L L I+DEQHR Sbjct: 352 EPLGVRIVWLAGKVTGKARAAAMAEVASGQAQVVVGTHALMQDAVVFHDLALAIIDEQHR 411 Query: 406 FGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461 FGV QRL L K A PH L+MTATPIPRTL + + D+D+S I E P GR P++T+ Sbjct: 412 FGVHQRLALRDKGAAAGSVPHQLVMTATPIPRTLAMAAYADLDVSAIDELPPGRTPVQTI 471 Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-----------FRSVVERFNSL 510 ++ R E++ER++ +EG++AYW+C IEE ++++ ++ F +L Sbjct: 472 VLSAERRPELVERIRAACAEGRQAYWVCTLIEESEDTDKGAQNGPPRIEAQAAQVTFETL 531 Query: 511 HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 +A++HGRM +K+ M FK G LL+ATTVIEVG+DV +AS++IIENAE Sbjct: 532 SAQLPGVRVALVHGRMKPAEKQQAMLDFKQGRTDLLVATTVIEVGVDVPNASLMIIENAE 591 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629 GLAQLHQLRGRVGRG SSC+LLY PLS + RL ++ T DGF+IAE DL+ R Sbjct: 592 RLGLAQLHQLRGRVGRGAAASSCVLLYQGPLSLMARQRLETMRQTNDGFVIAERDLELRG 651 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 GE+LG +Q+G+ F IA LL + A+ +L + P++ Sbjct: 652 PGELLGTRQTGLASFRIADLARDAGLLPRVQVLAERLLDEAPEIA 696 >gi|34496388|ref|NP_900603.1| ATP-dependent DNA helicase RecG [Chromobacterium violaceum ATCC 12472] gi|34102241|gb|AAQ58607.1| ATP-dependent DNA helicase [Chromobacterium violaceum ATCC 12472] Length = 682 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 246/646 (38%), Positives = 369/646 (57%), Gaps = 26/646 (4%) Query: 40 RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99 R DL+ + P + D + I++ + + G ++ H + R+ ++ + DG+G Sbjct: 29 RRFDLVLHLPLRYEDETHIYPIADAPYGQPALVEGTVTAHE-VSYKPRKQLRVQIEDGSG 87 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV--NFPLIE 157 + L F + LK F EG +I G+I++ MVHP +++V PL + Sbjct: 88 TLMLRFIHFYPSQLKQ-FAEGSRIRALGEIRRGFAGDEMVHP-----KTREVREGAPLAD 141 Query: 158 A---VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 + VY GL+ + +K+ V A + L E + L+ + A+A ++H P Sbjct: 142 SLTPVYPTVNGLTQPVLRKL-VHAELKSQRLDELLPAPLMAPLALQPFADAIRLLHQPPP 200 Query: 215 AKDFEWTS--------PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266 EW++ PA +RL +DELLA Q+++ L + + I +G ++ K+L Sbjct: 201 ----EWSAQQLADPRLPAWQRLKFDELLAQQLSMRLAYRARRLGHAPRIAGDGSLSGKLL 256 Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 ++PF T +Q + +I D+ Q + M R+LQGDVGSGKT+VA +A +A+EAG Q + Sbjct: 257 ASLPFQLTGAQRRVLDEIRADLRQPHPMHRLLQGDVGSGKTIVAALAALSAIEAGYQVAL 316 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 MAP ILA+QHY + + + V ++G++ + +++AL+ IA GQ + +GTHALF Sbjct: 317 MAPTEILAEQHYLKLSGWLAPLGLGVSWLSGSLRKKAKQQALDEIASGQCRLAVGTHALF 376 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 QD + + KL L IVDEQHRFGV QRL L K PH L+M+ATPIPRTL ++ D+D+S Sbjct: 377 QDDVAFQKLGLAIVDEQHRFGVGQRLALQDKGEEPHQLMMSATPIPRTLAMSFYADLDVS 436 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 I E P GR PI T +I R EV++ ++ +EG +AYW+CP IEE + ++ V+ Sbjct: 437 AIDELPPGRTPIVTKLIGSPRRAEVVQFVEKTCAEGNQAYWVCPLIEESEALQLQTAVDC 496 Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 L + I ++HGRM +K M +F G +L+ATTVIEVG+DV +AS+++I Sbjct: 497 HQQLQQDLPGRRIGLVHGRMKAAEKAEAMAAFGAGQLDVLVATTVIEVGVDVPNASLMVI 556 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625 E+AE GLAQLHQLRGRVGRG S C+LL+ PLS + RL V+ DGF IA +DL Sbjct: 557 EHAERMGLAQLHQLRGRVGRGSARSVCVLLFENPLSDLAKARLKVIYENTDGFEIARQDL 616 Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671 + R GE LG +QSG+P A E +LLE AR A +L + P Sbjct: 617 QIRGPGEFLGARQSGLPMLRFADLEQDQALLEAARDLAPVLLERWP 662 >gi|254524632|ref|ZP_05136687.1| ATP-dependent DNA helicase RecG [Stenotrophomonas sp. SKA14] gi|219722223|gb|EED40748.1| ATP-dependent DNA helicase RecG [Stenotrophomonas sp. SKA14] Length = 703 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 250/696 (35%), Positives = 382/696 (54%), Gaps = 35/696 (5%) Query: 2 RPSFLNPLFAP-----LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRH 56 R + + P+ +P L+ GVG + +K+ G A DL + P + DR Sbjct: 3 RKAAVTPVLSPSGEASLAMLAGVGPAVA---AKLQARGLAT---LQDLWLHLPLRYEDRT 56 Query: 57 YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILL-----NDGTGEITLLFFYRKTE 111 +I ++ + G + +++ Y+ +L ++G G + L FF+ + + Sbjct: 57 RLTRIEDLRNGVPAQVEGRV-----VAVERGMRYRPMLKVAVEDEGQGTLVLRFFHFRQQ 111 Query: 112 MLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVD 169 + F G ++ G K + +VHP Y + + D ++ VY G+ Sbjct: 112 QVGQ-FAVGNRLRCFGTPKPGHLGLEIVHPSYQVLGRNDDPELGDRLDPVYPTVEGVGPM 170 Query: 170 LFKKIIVEALSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSP 223 +K+I +AL RLP E + L PS+ A +H P D T P Sbjct: 171 TMRKLIGQALDRLPEESTLELLPSGWLDGLKLPSLRSALLTVHRPPPDADLAALAAGTHP 230 Query: 224 ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283 A+ RLA +ELLA ++L R + P+ G +A+ +L+ +PF+ T +Q K Sbjct: 231 AQRRLAMEELLAHHLSLRRQRIALQAHHAPPLAGPGTLAKALLKQLPFALTGAQARVFKQ 290 Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343 I +D+S+ + MLR++QGDVGSGKT+VA +A AVE G Q + AP +LA+QH ++ Sbjct: 291 IREDLSRPSPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLNNLRG 350 Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403 + + + + + G + R K +E++A+G+A +++GTHAL QD++ + L L IVDEQ Sbjct: 351 WLEPLGVRIAWLAGKVTGKARAKVMEQVANGEAQVVVGTHALMQDAVVFQDLALAIVDEQ 410 Query: 404 HRFGVQQRLKLTQKA----TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 HRFGV QRL L K + PH L+MTATPIPRTL ++ D+D+S I E P GR P++ Sbjct: 411 HRFGVHQRLALRDKGAGGNSVPHQLVMTATPIPRTLAMSEYADLDVSAIDELPPGRTPVQ 470 Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518 TV + +R E+IER+ + EG++ YW+C IEE +E + + SL + Sbjct: 471 TVALNNDRRPELIERIALACREGRQVYWVCTLIEESEELDATPAQATYESLQALLPGVRV 530 Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578 ++HGR+ +K + M +FK G LL+ATTVIEVG+DV +AS+++IENAE GLAQLHQ Sbjct: 531 GLVHGRLKAAEKLATMVAFKTGEIDLLVATTVIEVGVDVPNASLMVIENAERLGLAQLHQ 590 Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638 LRGRVGRG +S C+LLY PLS+ + RL ++ T DGF+IAE+DL+ R GE+LG +Q Sbjct: 591 LRGRVGRGSAVSRCVLLYQAPLSQMARERLQTMRETNDGFVIAEKDLELRGPGELLGTRQ 650 Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 +G+ F IA LL A+ +L Q P L Sbjct: 651 TGLAGFRIADLARDAGLLPGVHDLAERLLAQQPALA 686 >gi|194337413|ref|YP_002019207.1| ATP-dependent DNA helicase RecG [Pelodictyon phaeoclathratiforme BU-1] gi|194309890|gb|ACF44590.1| ATP-dependent DNA helicase RecG [Pelodictyon phaeoclathratiforme BU-1] Length = 706 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 251/715 (35%), Positives = 383/715 (53%), Gaps = 42/715 (5%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 ++ +GVG K L + A DL Y P ++DR IS +++ VT+ Sbjct: 7 IAYLKGVGTKKGAILRE------AGMVTLDDLFDYFPRRYLDRSAMKSISSLADGETVTV 60 Query: 73 TGYISQHSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 G + + QL P +K L D TG + L +F R +G + V GK Sbjct: 61 VGTVIKT---QLDGDSPGRARFKAWLGDQTGVLELTWF-RGVRYFSRSVVQGDSLAVHGK 116 Query: 129 IKKLKNRIIMVHPHYI--------FHNSQDVNFPLIEAVYSLP----------TGLSVDL 170 + + M HP Y N + +F L +P GL Sbjct: 117 VSYFGHHAQMQHPDYDRLTPDLIESRNGECSDFELYNTGKIIPLYPTNEAMKQAGLGSKS 176 Query: 171 FKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA 229 + +I A P E + +L + +AEA+ +H P E + AR R+ Sbjct: 177 LRTLIARAFELCTPGKEENLTSSMLADNNLLPLAEAYREMHFP---SSHEQLARARYRMK 233 Query: 230 YDELLAGQIALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288 + EL Q+ L + ++ + G++ QK+ +PF+ T++Q++A+++I +D+ Sbjct: 234 WTELFYAQLLFALRHSEIRRNRAAVKFTHSGEVTQKLYATLPFALTEAQKTAVREIYRDL 293 Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348 + M R+LQGDVGSGKT+VA+ AMA AV+ G QA MAP ILA QHY +K+ Sbjct: 294 RSGSPMNRLLQGDVGSGKTIVAMFAMALAVDNGLQAAFMAPTEILAVQHYLVMKRLFNPL 353 Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408 + V ++TG + R++ L + G+ HI +GTHA+ + + Y L LVI+DEQHRFGV Sbjct: 354 GLQVGLVTGRQRKKERQEVLAALGSGELHIAVGTHAMIEPGVSYATLGLVIIDEQHRFGV 413 Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468 QR +KA PHVLLMTATPIPRTL + GD+D+S I + P GR P++T++ Sbjct: 414 LQRKAFQEKAIHPHVLLMTATPIPRTLTMGVFGDLDVSVIRQMPVGRIPVRTIVRSEEEK 473 Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMS 526 +V + L+ +++G++ Y + P +EE ++ + ++ VE + L + + +IHG++S Sbjct: 474 GKVYDFLRAEIAKGRQGYIVYPLVEESEKMDLKAAVESYQELSSTLFADLRSGLIHGQLS 533 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 +KESVM+ F+ G LL+ TTVIEVG+DV +A++++IE+AE FGLAQLHQLRGRVGRG Sbjct: 534 PDEKESVMEQFRRGEIDLLVGTTVIEVGVDVPNATVMVIEHAERFGLAQLHQLRGRVGRG 593 Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFL 645 E S+C LLY +S ++ RLS +++T DGFLI+E D K R G ILG +QSG + Sbjct: 594 EHRSTCFLLY-AKMSADARERLSAMESTTDGFLISEIDAKIRGAGNILGKEQSGTLSGLR 652 Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 +A +++ AR A I+ +D L S IR Y+ QY++ F G Sbjct: 653 VADLNKDFDIMQSARAAAFRIVEEDGQLRSAEHVMIR-ECYVRQYHDRFTLADIG 706 >gi|53803678|ref|YP_114457.1| ATP-dependent DNA helicase RecG [Methylococcus capsulatus str. Bath] gi|53757439|gb|AAU91730.1| ATP-dependent DNA helicase RecG [Methylococcus capsulatus str. Bath] Length = 691 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 255/678 (37%), Positives = 372/678 (54%), Gaps = 29/678 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L +G G K LS++ G + DLL + P + DR + + + + Sbjct: 12 LDNLQGAGTKT---LSRLNKLGI---FKLQDLLLHLPIRYEDRTRLTPLGALQPGQPALV 65 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G ++ + RR ++DGTG + L FF+ + E L+ R+I G+++ Sbjct: 66 EGGVA-FTDVAGTSRRSLICRISDGTGFLDLRFFHFRPEQLR-ALSSLRRIRCFGEVRVG 123 Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + + M+HP Y + PL + VY GLS ++ + +AL RL PE Sbjct: 124 VHGLEMIHPQY-EALPETAPAPLETGLTPVYPTTDGLSQQSLRRFVAQAL-RL-AEPEHE 180 Query: 190 EKDLLQKKSFP-----SIAEAFNIIHNPRK--AKDFEWTSPARERLAYDELLAGQIALLL 242 + L + P S +A +H P K E AR RLAY+ELLA ++L Sbjct: 181 KSFRLPPRLAPELDALSWWDAVRTLHRPMDDCPKALER---ARRRLAYEELLAHHLSLAR 237 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 R++ ++ +N + I +PFS T +Q I +I D+ MLR+LQGDV Sbjct: 238 FRQEIRRRSAPVLNTDEAIKTTFQSGLPFSLTGAQRRVIGEIESDLRSGRPMLRLLQGDV 297 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKT+VA A AA +G Q +MAP +LA+QH+ + +++ + ++TG + Sbjct: 298 GSGKTIVAAHAALAAASSGWQTALMAPTELLAEQHFHTFSGWLESSGVTTTLLTGKIKGQ 357 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK----A 418 RR+AL IA G ++IGTHALFQD++++++L L I+DEQHRFGV QRL L K A Sbjct: 358 GRREALAAIASGATALVIGTHALFQDAVEFHRLGLTIIDEQHRFGVHQRLALRDKAHPLA 417 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH L+MTATPIPRTL + D+D S + E P GR P+ T +IP R E+I+R+ Sbjct: 418 ALPHQLVMTATPIPRTLAILGYADLDCSVLDELPPGRTPVVTRLIPSTRRGEIIDRIANW 477 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 ++ G++AYW+C I+E + + SL + I ++HGRMS +K+ VM F Sbjct: 478 IARGRQAYWVCTLIDESEALQCEAAANTAASLAQTLPGLRIRLLHGRMSAAEKDGVMREF 537 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 K G +L+ATTVIEVG+DV +A ++IIEN E GLAQLHQLRGRVGRG + CILLY Sbjct: 538 KAGESDILVATTVIEVGVDVPNAGLMIIENPERLGLAQLHQLRGRVGRGPGDAYCILLYQ 597 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PPLS RL +LK++ DGF IAE DL+ R GE LG++Q+G+ +F IA L+E Sbjct: 598 PPLSAIGRERLKILKDSSDGFAIAERDLRLRGPGEFLGVRQTGLARFRIADLTRDADLIE 657 Query: 658 IARKDAKHILTQDPDLTS 675 A+ +L P+L + Sbjct: 658 TVSASAERVLEHHPELVA 675 >gi|58580774|ref|YP_199790.1| ATP-dependent DNA helicase RecG [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425368|gb|AAW74405.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 717 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 257/708 (36%), Positives = 387/708 (54%), Gaps = 52/708 (7%) Query: 3 PSFLNPLFAPLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 PS APLS+ GVG K + F ++ I DL + P + DR I Sbjct: 9 PSLAVAGQAPLSSLPGVGPKVADKFAARGI-------LSVQDLWLHLPLRYEDRTRLTTI 61 Query: 62 SEISEERIVTITGYISQ-HSSFQLQKRRP-YKILLNDGT-GEITLLFFYRKTEMLKNVFF 118 +++ I G + F+ RP ++ ++D + G + L FF+ + + F Sbjct: 62 AQLQSGVPAQIEGRVDAVERGFRF---RPVLRVAVSDASHGTLVLRFFHFRAAQVAQ-FA 117 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIV 176 G ++ V G K +N +VHP Y + +D ++ VY + G+ +K+I Sbjct: 118 VGTRVRVFGTPKPGQNGWEIVHPSYRVLAPDEDAGLGDSLDPVYPVLEGVGPATLRKLIG 177 Query: 177 EALSRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPAR 225 +AL RLP + P W LQ + PS+ A +H P D PA+ Sbjct: 178 QALERLPPEAALELLPPHW-----LQDEQLPSLRAALLTMHRPPVGTDPQQLLAGGHPAQ 232 Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285 +RLA +ELLA Q++L R ++ + G + Q++ R +PF T +Q+ + I Sbjct: 233 QRLAIEELLAHQLSLRRQRIALQRFHAPSLPGNGTLVQQLRRALPFQLTGAQQRVFEQIA 292 Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345 +D++Q MLR++QGDVGSGKT+VA +A AVE G Q + AP +LA+QH ++ + Sbjct: 293 RDLAQSWPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLNNLRDWL 352 Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405 + I + + G + R A+ +A GQA +++GTHAL Q+++ ++ L L I+DEQHR Sbjct: 353 EPLGIRIVWLAGKVTGKARAAAMADVASGQAQVVVGTHALMQEAVVFHDLALAIIDEQHR 412 Query: 406 FGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461 FGV QRL L K A PH L+MTATPIPRTL +++ D+D+S I E P GR P++T+ Sbjct: 413 FGVHQRLALRDKGAAAGSVPHQLVMTATPIPRTLAMSTYADLDVSAIDELPPGRTPVQTI 472 Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--------------FRSVVERF 507 ++ R E++ER++ +EG++AYW+C IEE +E ++ F Sbjct: 473 VLSAERRPELVERIRAACAEGRQAYWVCTLIEESEEPEKGARGQHGGPPRIEAQAAEVTF 532 Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 +L +A++HGRM +K+ M FK G LL+ATTVIEVG+DV +AS++IIE Sbjct: 533 EALSAQLPGVRVALVHGRMKPAEKQQAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIE 592 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626 NAE GLAQLHQLRGRVGRG SSC+LLY PLS + RL ++ T DGF+IAE+DL+ Sbjct: 593 NAERLGLAQLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLE 652 Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 R GE+LG +Q+G+ F IA LL + A+ +L + P++ Sbjct: 653 LRGPGELLGTRQTGLASFRIADLARDAGLLPRVQVLAERLLEEVPEIA 700 >gi|288942236|ref|YP_003444476.1| ATP-dependent DNA helicase RecG [Allochromatium vinosum DSM 180] gi|288897608|gb|ADC63444.1| ATP-dependent DNA helicase RecG [Allochromatium vinosum DSM 180] Length = 717 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 239/647 (36%), Positives = 363/647 (56%), Gaps = 16/647 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLLF+ P + DR ++EI + G I + S L +RR K+ + D G Sbjct: 57 DLLFHLPLRYQDRTRLTPLTEIEVGVETWVEGEILE-SGIGLGRRRSLKVWVGDALGAGL 115 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAV 159 LL F+ + G ++ G++++ + MVHP Y ++ + P+ + + Sbjct: 116 LLRFFYFSPQQAAALKPGERVRCYGEVRQGPQSLEMVHPEYRLLRAE-ADEPIAACLTPI 174 Query: 160 YSLPTGLSVDLFKKIIVEALSRL--PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 Y GL ++ + +AL+ + E + ++L P++ EA +H P Sbjct: 175 YPSTEGLQQTSWRGLTDQALALMERTAPAELLPPEILDPLGLPTLTEALAFLHRPPVGTS 234 Query: 218 F----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 E PA RLA++EL+A Q++L MR + ++ + +G + +++ ++PF Sbjct: 235 LQDLTEGRHPAFARLAFEELVAHQVSLRRMRLEQRRVSAPVLGGDGGLRERLRASLPFRL 294 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T SQE + +I D++Q M R+LQGDVG+GKT+VA +A A+E+ QA +MAP +L Sbjct: 295 TASQERVVAEIAADLAQSRPMQRLLQGDVGAGKTVVAALAALQALESDCQAALMAPTELL 354 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QH+ + + + + G R + L IA G A I++GTHAL QD + + Sbjct: 355 AEQHHRSLSGWLGALGLEPVWLAGRHKGRERDERLAAIASGAAPIVVGTHALLQDDVAFQ 414 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKIT 449 L LVI+DEQHRFGV QRLKL +K APH L+MTATPIPR+L +T D+D+S I Sbjct: 415 DLGLVIIDEQHRFGVHQRLKLREKGGGEDGAPHQLIMTATPIPRSLAMTLYADLDLSVID 474 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P GR PI T +P R DEVIER++ G++AYW+C IEE + ++ + Sbjct: 475 GLPPGRTPIVTRAVPDTRRDEVIERVRQACLAGRQAYWVCTLIEESEVLECQAAEDTARQ 534 Query: 510 LHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 L + ++HGR+ ++++VM +F +G LL+ATTVIEVG+DV +AS++IIEN Sbjct: 535 LSACLEGLRVGLVHGRLKSQERDAVMAAFASGALDLLVATTVIEVGVDVPNASLMIIENP 594 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628 E GLAQLHQLRGRVGRG S C+LLYH PLS + RL +++++ GF IAE DL R Sbjct: 595 ERLGLAQLHQLRGRVGRGSVESHCLLLYHAPLSAIARERLGIIRDSTSGFEIAERDLAIR 654 Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 GE+LG +Q+G +F IA P L+ A++ A +L P+L + Sbjct: 655 GAGEVLGTRQTGSIQFRIADPLRDQPLIAEAQRAADRLLVGYPELVT 701 >gi|255658147|ref|ZP_05403556.1| ATP-dependent DNA helicase RecG [Mitsuokella multacida DSM 20544] gi|260849454|gb|EEX69461.1| ATP-dependent DNA helicase RecG [Mitsuokella multacida DSM 20544] Length = 687 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 269/697 (38%), Positives = 388/697 (55%), Gaps = 37/697 (5%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75 +GVG K L+++ R D+L Y P ++ D+ +I+++ + T+ G Sbjct: 10 LKGVGPKKKAELARL------GIARVYDVLTYFPRTYEDQSALTRIADLRPGTVATVAGT 63 Query: 76 ISQHSSFQLQK-RRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I + Q Q RR IL LNDG+G + + +F +K LKN GR++ V+GK Sbjct: 64 IV---NLQEQTGRRGLTILTAYLNDGSGLLQVTWFNQK--YLKNKLKVGRRVFVSGKPAY 118 Query: 132 L---KNRIIMVHPHY---IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 + M Y + Q I VY+ L+ F+ ++ EAL L Sbjct: 119 AYGGHGQFAMSQLRYFQILDEGEQAAGLCGILPVYAATERLNQKFFRTLVEEALEAADEL 178 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 PE I +L ++ EA +H P KD E AR RLA+ EL Q LLL++K Sbjct: 179 PELIPARILAERKLMGRREALRAVHFP---KDGEELKRARYRLAFSELYLIQCGLLLIKK 235 Query: 246 QFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 Q ++ +GI GK+ +L +PF+ T Q+ A ++I +DM + M R++QGDVGS Sbjct: 236 QSQQTRLGIRHQPNGKLVAAVLSGLPFTLTHDQQQAWQEICRDMERTVPMRRLVQGDVGS 295 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKT++A++A+ VE G Q +MAP ILA QHYE + I V ++G++ R Sbjct: 296 GKTVIAMLALVKTVETGWQGAMMAPTEILAAQHYENLSAKLAPLGIRVGYLSGHLTPRER 355 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHV 423 R+ E IA + I+IGTHAL QD + + +L LVI DEQHRFG+ QR L +K A P V Sbjct: 356 REMHEAIACHEVDIVIGTHALIQDDVHFARLGLVITDEQHRFGIAQRAALEKKGAHVPDV 415 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRT+ LT GD+D+S I E P GR+PI+T + +R + + ++ + G+ Sbjct: 416 LVMTATPIPRTMTLTVYGDLDVSLIRELPPGRQPIRTFVRRPDRRPLIYQYVRSQIEAGR 475 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGT 541 +AY +CP IE +ES+ S E ++ L I ++HG+++ +KE VM F Sbjct: 476 QAYVVCPLIEMNEESDLPSAEEVYDELRFGIFRGIPCGLVHGKLAPAEKERVMQDFYADK 535 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 KLL++TTVIEVG++V +ASI++IE+AE FGLAQLHQLRGR+GRG S CIL+ + Sbjct: 536 IKLLVSTTVIEVGVNVPNASIMVIEHAERFGLAQLHQLRGRIGRGSYASYCILVSEGK-T 594 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ-PELHDSLLEIAR 660 +N+ RL ++ DGF +AEEDL+ R G+ G Q G+P IA+ PE LLE A Sbjct: 595 ENARERLRIMATVSDGFKLAEEDLRLRGPGQFFGSMQHGLPDLKIARVPEDIAILLE-AH 653 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFI 697 + A+ LT DL IR +L L QY E FQ I Sbjct: 654 RAAEATLTSQGDL-----DFIRPILAL-QYKERFQHI 684 >gi|238764306|ref|ZP_04625257.1| ATP-dependent DNA helicase recG [Yersinia kristensenii ATCC 33638] gi|238697457|gb|EEP90223.1| ATP-dependent DNA helicase recG [Yersinia kristensenii ATCC 33638] Length = 638 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 241/618 (38%), Positives = 365/618 (59%), Gaps = 20/618 (3%) Query: 70 VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 VT+ G + + S +RR ++DG+G +TL FF M KN G+ + G+ Sbjct: 7 VTVEGEVLR-SDISFGRRRMMTCQISDGSGVLTLRFFNFNAAM-KNSLSPGKHVIAYGEA 64 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRL--PV 184 K+ ++HP Y H +++ L E+ VY G+ +K+I +AL+ L V Sbjct: 65 KRGNTGPEIIHPEYRVHG-ENIGVELQESLTPVYPTTEGIRQATLRKLIDQALAMLDSSV 123 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIAL 240 + E + +L +S S+ EA + +H+P + D E PA+ RL +ELLA +++ Sbjct: 124 IAELLPIEL--SRSLISLPEAIHTLHSPPADIQLADLEQGKHPAQRRLIMEELLAHNLSM 181 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L +R + + + E ++ Q+ L +PF+PT +Q+ + +I QDM+ M+R++QG Sbjct: 182 LAVRAGAQSYRALSLLPEEQLKQRFLAALPFTPTHAQQRVVAEIEQDMTHDFPMMRLIQG 241 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKTLVA +A A+ G Q +MAP +LA+QH +++ + + V + G Sbjct: 242 DVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANTFRQWLEPLGLQVGWLAGKQK 301 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 R E +A GQ +++GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 302 GKARLAQQEAVASGQVSMVVGTHAMFQEQVQFSGLALVIIDEQHRFGVHQRLALWEKGEE 361 Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R +VI+R+K Sbjct: 362 QGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDVIQRVK 421 Query: 477 -VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 L EG++AYW+C IEE + ++ L + ++HGRM +K++VM Sbjct: 422 NACLEEGRQAYWVCTLIEESELLEAQAAEVTCEELKIALPEIKVGLVHGRMKGPEKQAVM 481 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 +FK G +LL+ATTVIEVG+DV +AS++II+N E GLAQLHQLRGRVGRG S C+L Sbjct: 482 LAFKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAVASHCVL 541 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 LY PLSK + RL VL+++ DGF+IA+ DL+ R GE+LG +Q+G +F +A + Sbjct: 542 LYKTPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKVADLLRDQA 601 Query: 655 LLEIARKDAKHILTQDPD 672 ++ ++ A+H+ Q P+ Sbjct: 602 MIPEVQRVARHLHQQYPE 619 >gi|217969253|ref|YP_002354487.1| ATP-dependent DNA helicase RecG [Thauera sp. MZ1T] gi|217506580|gb|ACK53591.1| ATP-dependent DNA helicase RecG [Thauera sp. MZ1T] Length = 684 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 243/670 (36%), Positives = 368/670 (54%), Gaps = 21/670 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P + GVG + + L+++ G D+L + P + D I+ + Sbjct: 6 PPRGWPGVGAQLAGRLARLDLRGPR------DVLLHLPLRYEDETRLTPIARLRPGFPAQ 59 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEIT--LLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G + S L+ RR + D +G + L FY + L G ++ + G+ Sbjct: 60 VEGEV-LGSEVVLRPRRQLVARIADDSGTLVARWLNFYPSQQKL---LAPGGRVRLFGEA 115 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + + MVHP + + VY G+ +K++ +AL P L E + Sbjct: 116 RGGFFGLEMVHPRLRAVAPGEALPDALTPVYPTTAGVGQITLRKLVAQALQSEP-LDELL 174 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRK 245 L + P AEA + +H+P D + PA +R+ ++ELL Q++L Sbjct: 175 PAAWLHRLGLPGFAEALHALHHPAPDADPFALEQREHPAWQRMKFEELLVQQLSLRRAWL 234 Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + + + + +L ++PF PT +Q +I D++ + M R+LQGDVGSG Sbjct: 235 ARRAQAAVALPARALLTAALLESLPFRPTGAQARVGAEIAADLAAPHPMQRLLQGDVGSG 294 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KTLVA +AM A E G QA +MAP ILA+QH++ + + + I V ++G+ + R Sbjct: 295 KTLVAALAMLQAAENGWQAAMMAPTEILAEQHWKKLSAWLEPLGIGVAWLSGSRRKRARE 354 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PH 422 L R+A G+ + +GTHAL +D + +L LV+VDEQHRFGV+QRL L +K PH Sbjct: 355 AELARLASGEVLLAVGTHALIEDPVTLPRLALVVVDEQHRFGVRQRLALREKGEGGRRPH 414 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 +L+M+ATPIPRTL +T D+D+S + E P GR PI+T ++ R DEV+ R++ EG Sbjct: 415 MLMMSATPIPRTLAMTHYADLDVSVLDELPPGRTPIRTRLVSDVRRDEVVARVRAACLEG 474 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541 ++AYW+CP IEE + ++ + F +L E + ++HGR+ + +K + M +F G Sbjct: 475 RQAYWVCPLIEESEALQLQTAQDTFATLVEALPELRVGLVHGRLRNEEKSATMAAFSAGA 534 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S CIL+Y PLS Sbjct: 535 LDLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCILIYAQPLS 594 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 + RL V+ DGF IA EDL+ R GE +G +QSG+P A EL L E AR+ Sbjct: 595 QTGRERLKVIYENIDGFAIAREDLRIRGPGEFVGARQSGVPLLRYADLELDAGLAEPARE 654 Query: 662 DAKHILTQDP 671 A+H+L DP Sbjct: 655 LAEHLLAHDP 664 >gi|166713265|ref|ZP_02244472.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 717 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 256/708 (36%), Positives = 387/708 (54%), Gaps = 52/708 (7%) Query: 3 PSFLNPLFAPLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 PS APLS+ GVG K + F ++ I DL + P + DR I Sbjct: 9 PSLAVAGQAPLSSLPGVGPKVADKFAARGI-------LSVQDLWLHLPLRYEDRTRLTTI 61 Query: 62 SEISEERIVTITGYISQ-HSSFQLQKRRP-YKILLNDGT-GEITLLFFYRKTEMLKNVFF 118 +++ I G + F+ RP ++ ++D + G + L FF+ + + F Sbjct: 62 AQLQSGVPAQIEGRVDAVERGFRF---RPVLRVAVSDASHGTLVLRFFHFRAAQVAQ-FA 117 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIV 176 G ++ V G K +N +VHP Y + +D ++ VY + G+ +K+I Sbjct: 118 VGTRVRVFGTPKPGQNGWEIVHPSYRVLAPDEDAGLGDSLDPVYPVLEGVGPATLRKLIG 177 Query: 177 EALSRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPAR 225 +AL RLP + P W LQ + PS+ A +H P D PA+ Sbjct: 178 QALERLPPEAALELLPPHW-----LQDEQLPSLRAALLTMHRPPVGTDPQQLLAGGHPAQ 232 Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285 +RLA +ELLA Q++L R ++ + G + Q++ +PF T +Q+ + I Sbjct: 233 QRLAIEELLAHQLSLRRQRIALQRFHAPSLPGNGTLVQQLRGALPFQLTGAQQRVFEQIA 292 Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345 +D++Q + MLR++QGDVGSGKT+VA +A AVE G Q + AP +LA+QH ++ + Sbjct: 293 RDLAQSSPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLNNLRDWL 352 Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405 + I + + G + R A+ +A GQA +++GTHAL Q+++ ++ L L I+DEQHR Sbjct: 353 EPLGIRIVWLAGKVTGRARAAAMADVASGQAQVVVGTHALMQEAVVFHDLALAIIDEQHR 412 Query: 406 FGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461 FGV QRL L K A PH L+MTATPIPRTL +++ D+D+S I E P GR P++T+ Sbjct: 413 FGVHQRLALRDKGAAAGSVPHQLVMTATPIPRTLAMSTYADLDVSAIDELPPGRTPVQTI 472 Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--------------FRSVVERF 507 ++ R E++ER++ +EG++AYW+C IEE +E ++ F Sbjct: 473 VLSAERRPELVERIRAACAEGRQAYWVCTLIEESEEPEKGARGQHGGPPRIEAQAAEVTF 532 Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 +L +A++HGRM +K+ M FK G LL+ATTVIEVG+DV +AS++IIE Sbjct: 533 EALSAQLPGVRVALVHGRMKPAEKQQAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIE 592 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626 NAE GLAQLHQLRGRVGRG SSC+LLY PLS + RL ++ T DGF+IAE+DL+ Sbjct: 593 NAERLGLAQLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLE 652 Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 R GE+LG +Q+G+ F IA LL + A+ +L + P++ Sbjct: 653 LRGPGELLGTRQTGLASFRIADLARDAGLLPRVQVVAERLLEEAPEIA 700 >gi|167580654|ref|ZP_02373528.1| ATP-dependent DNA helicase RecG [Burkholderia thailandensis TXDOH] Length = 735 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 248/662 (37%), Positives = 371/662 (56%), Gaps = 29/662 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D + E+ G + + +R+ L +D Sbjct: 62 TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 121 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 E+ L F +K + G+++ V G ++ + +VHP D + PL +A Sbjct: 122 AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPSV---KVVDEDAPLPQA 177 Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 VY G+S +K I AL+R P+ LP + + LQ PS+A+A I+H+P Sbjct: 178 LTPVYPSTAGVSQAYLRKAIDNALTRTPLPELLPPEVARAYLQPLDVPSLADAVRILHHP 237 Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IAQ 263 D + T PA R+ +DELLA Q++L ++ + + + ++ Sbjct: 238 GVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRARDDGASLSA 297 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 ++ +PF+ T +QE + +I D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q Sbjct: 298 RLHAALPFTLTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQ 357 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 A +MAP ILA+QH ++ + + + V + G++ +R ALE A G A ++IGTH Sbjct: 358 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKTKDKRAALEAAALGTARLVIGTH 417 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRT 434 A+ QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRT Sbjct: 418 AMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRT 477 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L +T D+D+S I E P GR PI T ++ R DEVI R++ G++ YW+CP IEE Sbjct: 478 LAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEE 537 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ VE + +L + ++HGR++ +K +VMD+F +LL+ATTVIEV Sbjct: 538 SETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEV 597 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+L+Y PLS RL ++ Sbjct: 598 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRE 657 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 T DGF IA DL+ R GE LG +QSG A E L+E AR A ++ PD+ Sbjct: 658 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAGHPDV 717 Query: 674 TS 675 + Sbjct: 718 VA 719 >gi|294791988|ref|ZP_06757136.1| ATP-dependent DNA helicase RecG [Veillonella sp. 6_1_27] gi|294457218|gb|EFG25580.1| ATP-dependent DNA helicase RecG [Veillonella sp. 6_1_27] Length = 680 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 243/662 (36%), Positives = 381/662 (57%), Gaps = 33/662 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L+T +G+G L K+ G N T LL Y P ++ DR +I ++ + Sbjct: 5 LTTIKGIGPGREKQLHKL---GITNVT---SLLTYFPRTYEDRRTIYRIGDLKSGMTGGV 58 Query: 73 TGYISQHSSFQLQKRRP------YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 G + +Q++RP ++++ DGTG + ++ F + + KN + +G++I Sbjct: 59 VGTV-----IAVQEKRPRPQLSILEVVIADGTGPLKIVLFNQGYK--KNFYKKGQRIYAY 111 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184 GK + + M P N D P I +Y+L G+S + + + + Sbjct: 112 GKAEFQYGTMQMNTPQ--MENLGDSGEPDRGIVPIYALADGVSQFVVRSSVRNWFAANHE 169 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LPE + ++ + + S +AF ++H P ++ +E AR +LAY+EL Q L L+R Sbjct: 170 LPEILPVEVRESHHYMSRYDAFKMMHFPDSSEHYE---EARYQLAYEELFVMQAGLALLR 226 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 + + G + G++ + + N+PFS T Q+ A++DI DM + M R+LQGDVGS Sbjct: 227 SKEQCHRGPKMGPNGELMAQCIENLPFSLTGDQQRALEDIRIDMEDERPMQRLLQGDVGS 286 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKT+VA +++ A+E G Q +MAP ILA QHYE I+ N I +E++TG+ + + Sbjct: 287 GKTIVATLSLLKAIENGYQGALMAPTEILAAQHYEGIRTVCANLGITIELLTGSSTKKEK 346 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424 E +A G+ +IIGTHAL Q+ + ++ L LVI+DEQHRFGV QR +L QK T PHVL Sbjct: 347 EYIYEGLADGRIQMIIGTHALIQEGVNFHNLGLVIIDEQHRFGVDQRARLQQKGTYPHVL 406 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 +MTATPIPRT+ L+ GD+ +S I E P GRKP+KT + + + + ++EG++ Sbjct: 407 IMTATPIPRTMTLSVYGDLAVSLIKEMPPGRKPVKTYAVDSSYKERLRTFFGKEMAEGRQ 466 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542 Y +CP +EE ++ + ++ E + L E+F + + ++HGRM +K+ VM++F G Sbjct: 467 VYVVCPLVEESEKLDLQAAEELYLELKEYFYKAYEVGLVHGRMKPSEKDEVMNAFHRGEI 526 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 LL++TTVIEVG++V +A+I+ +E AE FGL+QLHQLRGRVGRG S CIL+ SK Sbjct: 527 SLLVSTTVIEVGVNVPNATIMCVEGAERFGLSQLHQLRGRVGRGAHQSYCILVSD---SK 583 Query: 603 N--SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 N S RL +++ +DGF +AE+DL R G++ G+ QSG+P +A +L AR Sbjct: 584 NDVSQERLKLMEQIQDGFELAEQDLLLRGSGQLFGLAQSGLPDLRVANIIKDIEILVKAR 643 Query: 661 KD 662 KD Sbjct: 644 KD 645 >gi|194367028|ref|YP_002029638.1| ATP-dependent DNA helicase RecG [Stenotrophomonas maltophilia R551-3] gi|194349832|gb|ACF52955.1| ATP-dependent DNA helicase RecG [Stenotrophomonas maltophilia R551-3] Length = 703 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 249/697 (35%), Positives = 384/697 (55%), Gaps = 35/697 (5%) Query: 2 RPSFLNPLFAP-----LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRH 56 R + + P+ +P L+ GVG + +K+ G A DL + P + DR Sbjct: 3 RKAAVTPVLSPSGEASLAMLAGVGPAVA---AKLQARGLAT---LQDLWLHLPLRYEDRT 56 Query: 57 YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILL-----NDGTGEITLLFFYRKTE 111 +I ++ + G + +++ Y+ +L ++G G + L FF+ + + Sbjct: 57 RLTRIEDLRNGVPAQVEGRV-----VAVERGMRYRPMLKVAVEDEGQGTLVLRFFHFRQQ 111 Query: 112 MLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVD 169 + F G ++ G K + +VHP Y + + D ++ VY G+ Sbjct: 112 QVGQ-FAVGNRLRCFGTPKPGHLGLEIVHPSYQVLGRNDDPELGDRLDPVYPTVEGVGPM 170 Query: 170 LFKKIIVEALSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSP 223 +K+I +AL RLP E + L PS+ A +H P D T P Sbjct: 171 TMRKLIGQALDRLPEESTLELLPSGWLDGLGLPSLRSALLTVHRPPPDADLAALAAGTHP 230 Query: 224 ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283 A+ RLA +ELLA ++L R + P+ GK+A+ +L+ +PF+ T +Q K Sbjct: 231 AQRRLAMEELLAHHLSLRRQRIALQAHHAPPLAGPGKLAKALLKQLPFALTGAQARVFKQ 290 Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343 I +D+++ + MLR++QGDVGSGKT+VA +A AVE G Q + AP +LA+QH ++ Sbjct: 291 IREDLARPSPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLNNLRG 350 Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403 + + + + + G + R K +E++A+G+A +++GTHAL Q+++ + L L IVDEQ Sbjct: 351 WLEPLGVRIAWLAGKVTGKARAKVMEQVANGEAQVVVGTHALMQEAVVFQDLALAIVDEQ 410 Query: 404 HRFGVQQRLKLTQKA----TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 HRFGV+QRL L K + PH L+MTATPIPRTL ++ D+D+S I E P GR P++ Sbjct: 411 HRFGVRQRLALRDKGAGGNSVPHQLVMTATPIPRTLAMSEYADLDVSAIDELPPGRTPVQ 470 Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518 TV + +R E+IER+ + EG++ YW+C IEE +E + + SL + Sbjct: 471 TVALNNDRRPELIERIALACQEGRQVYWVCTLIEESEELDATPAQATYESLQALLPGVRV 530 Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578 ++HGR+ +K + M +FK G LL+ATTVIEVG+DV +AS+++IENAE GLAQLHQ Sbjct: 531 GLVHGRLKAAEKLATMVAFKAGEIDLLVATTVIEVGVDVPNASLMVIENAERLGLAQLHQ 590 Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638 LRGRVGRG +S C+LLY PLS+ + RL ++ T DGF+IAE+DL+ R GE+LG +Q Sbjct: 591 LRGRVGRGSAVSRCVLLYQAPLSQMARERLQTMRETNDGFVIAEKDLELRGPGELLGTRQ 650 Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 +G+ F IA LL A+ +L Q P L Sbjct: 651 TGLAGFRIADLARDAGLLPGVHDLAERLLDQQPALAD 687 >gi|157149269|ref|YP_001456588.1| ATP-dependent DNA helicase RecG [Citrobacter koseri ATCC BAA-895] gi|157086474|gb|ABV16152.1| hypothetical protein CKO_05109 [Citrobacter koseri ATCC BAA-895] Length = 693 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 252/671 (37%), Positives = 373/671 (55%), Gaps = 28/671 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI DLL + P + DR + I E+ T Sbjct: 10 PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + RR ++DG+G +T+ FF M KN GR++ G+ K+ Sbjct: 64 VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGIKQATLRKLTDQALDLLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFEWTS-PARERLAYDELLAGQIALL 241 E + +L Q S+ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 AELLPPELAQ--GMTSLPEALRTLHRPPPSLQLSDLETGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ ++ + ++L +PF PT +Q + +I +DM+ M+R++QGD Sbjct: 238 ALRAGAQRFHAQRLSANDSLKNQLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + I V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHASNFRNWFAPLGIEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA GQ +++GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARLAQQEAIASGQVQMVVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDIIDRVRN 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 EG++AYW+C IEE ++ + L I ++HGRM +K++VM Sbjct: 478 ACTQEGRQAYWVCTLIEESDLLEAQAAEATWEELRLALPELKIGLVHGRMKPAEKQAVMA 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 Y PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNTEFKVADLLRDQAI 657 Query: 656 LEIARKDAKHI 666 + ++ A+HI Sbjct: 658 IPDVQRIARHI 668 >gi|255101722|ref|ZP_05330699.1| ATP-dependent DNA helicase RecG [Clostridium difficile QCD-63q42] gi|255307591|ref|ZP_05351762.1| ATP-dependent DNA helicase RecG [Clostridium difficile ATCC 43255] Length = 685 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 244/636 (38%), Positives = 375/636 (58%), Gaps = 12/636 (1%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEI 101 DLL+Y P F DR+ KI+++ + VTI IS ++F ++ KI + D TG Sbjct: 31 DLLYYFPRQFEDRNNLKKIAQLEDGEKVTIKAVISSINTFSPKEGMTLTKIDVKDETGSA 90 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161 L+FF + +KN F G I V GK+KK N + + + + N VY Sbjct: 91 KLVFFNK--SYIKNTFRPGDSILVFGKVKKKFNNLELTSCELEYLTNSPKNTCRFMPVYQ 148 Query: 162 LPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220 L G++ II L + ++ E++ + +++K SI A IH+P + + Sbjct: 149 LTYGVTNKEIMSIIRTVLEDKELIIQEYMPQRIIEKYRLCSIDFAVRNIHSPSSKESLKI 208 Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280 A R+ ++ELL Q+ L + + KE GI K +KI+ +PF TK+Q A Sbjct: 209 ---ALYRIVFEELLILQLGLFVFKSGRNKEDGIKFET-SKDLKKIISALPFKLTKAQNRA 264 Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340 + +I+QDM+ + M R++QGDVGSGKT+VAL+A+A V G Q +MAP ILA QHY Sbjct: 265 LDEIIQDMNLEKIMNRLVQGDVGSGKTVVALLALANCVLNGYQGALMAPTEILAGQHYIS 324 Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400 + + ++ I V ++ G++ + + LE+I + + I+IGTHAL +D +++ + LVI Sbjct: 325 LTESLKDFGINVGLLIGSLTKKQKDTVLEQIKNNEIDILIGTHALIEDKVEFNNIGLVIT 384 Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460 DEQHRFGV QR KL+ K P +L+MTATPIPRTL L GD+DIS I E P GR+PI+T Sbjct: 385 DEQHRFGVMQRSKLSLKGANPDILVMTATPIPRTLALILYGDLDISIIDELPPGRQPIET 444 Query: 461 VIIPINRIDEVIERL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-S 517 + I ++ D L + + G++ Y +CP +EE + +S VE L E+F Sbjct: 445 IAIEKSKRDRAYNNLVRREVESGRQVYIVCPLVEESEAIEAKSAVELVEELRAEYFHDLR 504 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 + ++HG+M +K+ VM FKN +L++TTVIEVG++V +A+++IIENAE FGLAQLH Sbjct: 505 LGLLHGKMKSSEKDEVMRLFKNKEIDILVSTTVIEVGVNVPNATLMIIENAERFGLAQLH 564 Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637 QLRGRVGRG S C+L+Y + R+++++ T DGF I+E+DL+ R GE G + Sbjct: 565 QLRGRVGRGSHKSYCVLIYDSK-TDVCRQRMAIMEETNDGFKISEKDLEIRGPGEFFGTR 623 Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 Q G+P+ +A H +L++A+++A++IL +D +L Sbjct: 624 QHGLPELKVANLFKHIKILKLAQQEARYILGEDNNL 659 >gi|255656538|ref|ZP_05401947.1| ATP-dependent DNA helicase RecG [Clostridium difficile QCD-23m63] gi|296450011|ref|ZP_06891775.1| DNA helicase RecG [Clostridium difficile NAP08] gi|296878392|ref|ZP_06902400.1| DNA helicase RecG [Clostridium difficile NAP07] gi|296261281|gb|EFH08112.1| DNA helicase RecG [Clostridium difficile NAP08] gi|296430690|gb|EFH16529.1| DNA helicase RecG [Clostridium difficile NAP07] Length = 685 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 243/636 (38%), Positives = 373/636 (58%), Gaps = 12/636 (1%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEI 101 DLL+Y P F DR+ KI+++ + VTI IS ++F ++ KI + D TG Sbjct: 31 DLLYYFPRQFEDRNNLKKIAQLEDSEKVTIKAVISSINTFSPKEGMTLTKIDVKDETGSA 90 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161 L+FF + +KN F G I V GK+KK N + + + + N VY Sbjct: 91 KLVFFNK--SYIKNTFRPGDSILVFGKVKKKFNNLELTSCELEYLTNSPKNTCRFMPVYQ 148 Query: 162 LPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220 L G++ II L + ++ E++ + ++ K SI A IH+P + + Sbjct: 149 LTYGVTNKEIMSIIRTVLEDKDLIIQEYMPQRIIDKYRLCSIDFAVRNIHSPNSKESLKI 208 Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280 A R+ ++ELL Q+ L + + KE GI K +KI+ +PF TK+Q A Sbjct: 209 ---ALYRIVFEELLILQLGLFVFKSGRNKEDGIKFET-SKDLKKIINALPFKLTKAQNRA 264 Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340 + +I+QDM + M R++QGDVGSGKT+VAL+A+A V G Q +MAP ILA QHY Sbjct: 265 LGEIIQDMDSEKIMNRLVQGDVGSGKTVVALLALANCVLNGYQGALMAPTEILAGQHYIS 324 Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400 + + ++ I V ++ G++ + + LE++ + + I+IGTHAL +D +++ + LVI Sbjct: 325 LTESLKDFGINVGLLIGSLTKKQKDTVLEQVKNNEIDILIGTHALIEDKVEFNNIGLVIT 384 Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460 DEQHRFGV QR KL+ K P +L+MTATPIPRTL L GD+DIS I E P GR+PI+T Sbjct: 385 DEQHRFGVMQRSKLSLKGVNPDILVMTATPIPRTLALILYGDLDISIIDELPPGRQPIET 444 Query: 461 VIIPINRIDEVIERL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-S 517 + I ++ D L + + G++ Y +CP +EE + +S VE L E+F Sbjct: 445 LAIEKSKRDRAYNNLVRREVESGRQVYIVCPLVEESEAIEAKSAVELVEELRAEYFHDLR 504 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 + ++HG+M +K+ VM FKN +L++TTVIEVG++V +A+++IIENAE FGLAQLH Sbjct: 505 LGLLHGKMKSSEKDEVMGLFKNKEIDILVSTTVIEVGVNVPNATLMIIENAERFGLAQLH 564 Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637 QLRGRVGRG S C+L+Y + R+++++ T DGF I+E+DL+ R GE G + Sbjct: 565 QLRGRVGRGSHKSYCVLIYDSK-TDVCRQRMAIMEETNDGFKISEKDLEIRGPGEFFGTR 623 Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 Q G+P+ +A H +L++A+++A++IL +D +L Sbjct: 624 QHGLPELKVANLFKHIKILKLAQQEARYILGEDNNL 659 >gi|254414435|ref|ZP_05028201.1| ATP-dependent DNA helicase RecG [Microcoleus chthonoplastes PCC 7420] gi|196178665|gb|EDX73663.1| ATP-dependent DNA helicase RecG [Microcoleus chthonoplastes PCC 7420] Length = 826 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 234/687 (34%), Positives = 393/687 (57%), Gaps = 29/687 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L +PLS +G++ S +L ++ R D+L+Y+P ID + + ++ Sbjct: 129 LDSPLSELPDIGRRRSDYLGRL----GVYTVR--DMLYYYPRDHIDYARQVNVKDLVAGE 182 Query: 69 IVTITGYISQHSSFQLQKRRP---YKILLNDGTGEITLLFFYRKT--------EMLKNVF 117 VT+ G + + + F + + +++L+ D TG++ L F+ E K + Sbjct: 183 TVTVVGTVKRCNCFTSPRNKKLSIFELLIKDSTGQLKLNRFFAGNRFSHRGWQEQQKRRY 242 Query: 118 FEGRKITVTGKIKKLKNRIIMVHPH-----YIFHNSQDVNFPLIEAVYSLPTGLSVDLFK 172 G + +G +KK K I + P ++ + + + VY L G+ D + Sbjct: 243 PAGAIVAASGLVKKNKYGITLDTPEIEVLDHLGGSIDSLKIGRVMPVYPLTEGVPADWVR 302 Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232 + ++ AL + L E + K + Q+ +++A +H P D + S AR RL +DE Sbjct: 303 QAVMAALPAVNQLQEPLPKGMRQQYDLMGVSDAIANLHFP---TDTDTLSRARRRLVFDE 359 Query: 233 LLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 Q+ L RK Q + + + GK+ + + +PF T +Q+ + DIL D+ Q Sbjct: 360 FFYLQLGFLQRRKMQQQVQSSAILAPTGKLIDRFYQLLPFELTSAQKRVVNDILNDLQQP 419 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351 M R++QGDVGSGKT+VA+IA+ AA+++G QA +MAP +LA+QHY + + + Sbjct: 420 TPMNRLVQGDVGSGKTVVAVIAILAAIQSGYQAALMAPTEVLAEQHYRKLVSWFNLLHLP 479 Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411 VE++TG++ RR+ ++ G+ +++GTHAL QD + + +L LV++DEQHRFGV+QR Sbjct: 480 VELLTGSVKVKKRREIHSQLETGELPLLVGTHALIQDPVNFQRLGLVVIDEQHRFGVEQR 539 Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471 +L QK +PHVL +TATPIPRTL LT GD+D+S+I E P GR+ I T ++ Sbjct: 540 AQLQQKGQSPHVLTLTATPIPRTLALTLHGDLDVSQIDELPPGRQNIHTSVLTGKERQNA 599 Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDID 529 + ++ +++G++ Y + P IEE ++ + RS VE L E + ++HGRMS + Sbjct: 600 YDLMRREIAQGRQVYIVLPLIEESEKLDVRSAVEEHQRLSESIFPQFQVGLLHGRMSSAE 659 Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589 K+ +++F++ +++++TTVIEVG+DV +A++++IENAE FGL+QLHQLRGRVGRG Sbjct: 660 KDEALNAFRDNQTQIIVSTTVIEVGVDVPNATVMMIENAERFGLSQLHQLRGRVGRGSHQ 719 Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649 S C+L+ + + RL VL+ ++DGF I+E D++ R GE+LG +QSG+ F +A Sbjct: 720 SYCLLMSGSK-TDTARQRLGVLEQSQDGFFISEMDMRFRGPGEVLGRRQSGLADFALASL 778 Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSV 676 +L +AR A+ I+ +D L ++ Sbjct: 779 VEDQEVLNLARDAAEKIVLEDKALENL 805 >gi|291612783|ref|YP_003522940.1| ATP-dependent DNA helicase RecG [Sideroxydans lithotrophicus ES-1] gi|291582895|gb|ADE10553.1| ATP-dependent DNA helicase RecG [Sideroxydans lithotrophicus ES-1] Length = 673 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 244/639 (38%), Positives = 366/639 (57%), Gaps = 18/639 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DL+ + P + D +I+++ + G I HS + RR L D +G + Sbjct: 23 DLVLHLPLRYEDETRITRIADLKPGESAQVEGEII-HSEVMYRPRRSLVCQLQDDSGILY 81 Query: 103 LLF--FYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA-- 158 L F FY + V G++I G+ + MVHP + PL +A Sbjct: 82 LRFLNFYPSQQKQLAV---GKRIRALGEPRMGFFGDEMVHPKCRVAGE---SVPLKQALT 135 Query: 159 -VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 VY GL K I AL+ LP L + + + +LQ+ P A + ++H P D Sbjct: 136 PVYPTTAGLPQATLTKHIHAALNELP-LDDTLPQKILQRLHLPEFAASVRLLHQPPPDID 194 Query: 218 ----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 E PA R+ +DELLA Q+++ + ++ + + + ++ +L+++PF+ Sbjct: 195 EDALLERAHPAWMRIKFDELLAQQLSMRVHYRERSRRVAPGLAAHNRLTDALLQDLPFAL 254 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T +Q+ +I D+++ + M R+LQGDVGSGKT+VA +A A+E G Q MAP IL Sbjct: 255 TGAQKKVWHEISTDLARPHPMQRLLQGDVGSGKTVVAALAALQAIENGYQVAFMAPTEIL 314 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QHY ++ + I ++G++ + + A ERIA G + IGTHALFQ+S++++ Sbjct: 315 AEQHYLKLRDWLVPLGITPVWLSGSLKKKDKTAAAERIAQGDTMLAIGTHALFQNSVEFH 374 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 KL LVIVDEQH+FGVQQRL L K PH L+M+ATPIPRTL ++ D+D+S I E P Sbjct: 375 KLGLVIVDEQHKFGVQQRLALRGKGAEPHQLMMSATPIPRTLAMSYYADLDVSVIDELPP 434 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 GR PI T ++ R +EV ER++ EG++AYW+CP I+E + ++ +E F +L + Sbjct: 435 GRTPIVTKLVSDARREEVFERVRAACLEGRQAYWVCPLIDESEALQLQTALETFATLTQI 494 Query: 514 FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 F I + HG++S +K M +FK G +LL+ATTVIEVG+DV +AS+++I++AE G Sbjct: 495 FPDLRIGLAHGKLSSTEKAETMAAFKAGELQLLVATTVIEVGVDVPNASLMVIDHAERMG 554 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 LAQLHQLRGRVGRG S C+LL+ PLS+ + RL ++ DGF IA++DL+ R GE Sbjct: 555 LAQLHQLRGRVGRGAAESLCVLLFQQPLSELARARLKIIFENTDGFEIAQQDLRLRGPGE 614 Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671 +LG +QSG+P A D LL+ AR A +L P Sbjct: 615 LLGARQSGVPMLRFADLAEDDKLLDKARDIADEMLRDFP 653 >gi|78049064|ref|YP_365239.1| ATP-dependent DNA helicase RecG [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037494|emb|CAJ25239.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 717 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 251/708 (35%), Positives = 384/708 (54%), Gaps = 52/708 (7%) Query: 3 PSFLNPLFAPLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 PS A LS+ GVG K + F ++ I DL + P + DR I Sbjct: 9 PSLAVAGQARLSSLPGVGPKVADKFAARGI-------LSVQDLWLHLPLRYEDRTRLTTI 61 Query: 62 SEISEERIVTITGYISQ-HSSFQLQKRRP-YKILLNDGT-GEITLLFFYRKTEMLKNVFF 118 +++ + G + F+ RP ++ ++D + G + L FF+ + + F Sbjct: 62 AQLQGGVPAQVEGRVEAVERGFRF---RPVLRVAVSDASHGTLVLRFFHFRAAQVAQ-FA 117 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIV 176 G ++ V G K ++ +VHP Y + +D ++ VY + G+ +K+I Sbjct: 118 VGTRLRVFGTPKPGQHGWEIVHPSYRVLAPDEDAGLGDSLDPVYPVLEGVGPATLRKLIG 177 Query: 177 EALSRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPAR 225 +AL RLP + P W LQ + PS+ A +H P D PA+ Sbjct: 178 QALERLPPESALELLPPHW-----LQDERLPSLRAALLTMHRPPVGTDPQQLLAGGHPAQ 232 Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285 +RLA +ELLA Q++L R ++ + G + Q++ + +PF T +Q+ + I Sbjct: 233 QRLAIEELLAHQLSLRRQRIALQRLHAPSLPGNGTLVQQLCKALPFQLTGAQQRVFEQIA 292 Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345 D++ + MLR++QGDVGSGKT+VA +A AVE G Q + AP +LA+QH ++ + Sbjct: 293 HDLAHPSPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLTNLRGWL 352 Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405 + I + + G + R + +A GQA +++GTHAL Q+++ ++ L L I+DEQHR Sbjct: 353 EPLGIRIVWLAGKVTGKARAAVMAEVASGQAQVVVGTHALMQEAVVFHDLALAIIDEQHR 412 Query: 406 FGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461 FGV QRL L K A PH L+MTATPIPRTL +++ D+D+S I E P GR P++T+ Sbjct: 413 FGVHQRLALRDKGAAAGSVPHQLVMTATPIPRTLAMSAYADLDVSAIDELPPGRTPVQTI 472 Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--------------FRSVVERF 507 ++ R E++ER++ +EG++AYW+C IEE +E ++ F Sbjct: 473 VLSAERRPELVERIRAACAEGRQAYWVCTLIEESEEPEKGAQGQQGGPPRIEAQAAEVTF 532 Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 +L +A++HGRM +K+ M FK G LL+ATTVIEVG+DV +AS++IIE Sbjct: 533 EALSAQLPGVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIE 592 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626 NAE GLAQLHQLRGRVGRG SSC+LLY PLS + RL ++ T DGF+IAE+DL+ Sbjct: 593 NAERLGLAQLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLE 652 Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 R GE+LG +Q+G+ F IA LL + A+ +L + P++ Sbjct: 653 LRGPGELLGTRQTGLASFRIADLARDAGLLPRVQVLAERLLDEAPEIA 700 >gi|93007226|ref|YP_581663.1| ATP-dependent DNA helicase RecG [Psychrobacter cryohalolentis K5] gi|92394904|gb|ABE76179.1| ATP-dependent DNA helicase RecG [Psychrobacter cryohalolentis K5] Length = 782 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 215/485 (44%), Positives = 302/485 (62%), Gaps = 15/485 (3%) Query: 201 SIAEAFNIIHNPRKAKDF-----------EWTSPARERLAYDELLAGQIALLLMRKQFKK 249 +I EA ++H P D T A +RL +EL A Q++LL R+Q + Sbjct: 276 TIFEALVLLHTPPTYTDAGQQYKLLTQLSARTHAACQRLIIEELTAHQLSLLYRRQQLHQ 335 Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309 ++ +A K+ +PF T +Q+ ++DI DM+ MLR++QGDVG+GKTLV Sbjct: 336 YKAPKCAIQSPLADKLFGALPFDLTGAQKRVMRDITADMATSIPMLRLVQGDVGAGKTLV 395 Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369 A A A+++G Q +MAP ILA+QH K + + I V + G RR+ALE Sbjct: 396 AAGAAGYALDSGWQVAVMAPTEILAEQHLVNFKNWFEPLGIGVGWLAGKQTAKQRREALE 455 Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLM 426 ++ +++GTHALFQD +Q+ KL LVI+DEQHRFGV+QR+ LT K A PH L+M Sbjct: 456 AVSENTVQVVVGTHALFQDQVQFAKLGLVIIDEQHRFGVEQRMALTNKGVAGSTPHQLIM 515 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486 TATPIPRTL ++ GD+D S I E P GR PI TV I NR DEVIER+ V G++AY Sbjct: 516 TATPIPRTLAMSVYGDMDTSIIDELPPGRTPITTVTIDRNRRDEVIERIAVNCEAGRQAY 575 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 W+C +EE + ++ + L E I ++HG+M DK+++M +FK G LLI Sbjct: 576 WVCSLVEESSVLDAQAAEATYEDLSERLDIRIGLVHGKMKGADKQAIMQAFKAGQLDLLI 635 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 ATTVIEVG+DV +AS+++IENAE GL+QLHQLRGRVGRG S C+LLY PLS+ Sbjct: 636 ATTVIEVGVDVPNASLMVIENAERLGLSQLHQLRGRVGRGSTKSYCVLLYQKPLSETGTE 695 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666 RL+VL+++ DGF+IA++DL+ R GE+LG +Q+G + +A + L IA++ AKH+ Sbjct: 696 RLNVLRDSTDGFVIAQKDLELRGPGELLGKRQTGNVGYYLADLIRDEQLFAIAQRLAKHL 755 Query: 667 LTQDP 671 + DP Sbjct: 756 IA-DP 759 Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 81/191 (42%), Gaps = 28/191 (14%) Query: 3 PSFLNP----------LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSF 52 P+ +NP L P++ GVG K + L+++ R DLL + P + Sbjct: 2 PTSVNPATPHLLDVLALDMPVTALAGVGPKVAEQLAQL------GIARIFDLLLHLPRDY 55 Query: 53 IDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF--YRKT 110 DR I +++ + ITG + + R ++++D TG I+L FF YR Sbjct: 56 EDRSRLVSIGDVAHGQAAMITGRVVHVDT----NRSGMTVIVDDDTGTISLRFFKVYRG- 110 Query: 111 EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSV 168 L G + + G++K + + HP Y I N VN L + +Y GL Sbjct: 111 --LAQTMCLGTHLQLFGEVKVSRYGKQIHHPEYQIISSNETVVNTGL-QPIYPSVKGLHQ 167 Query: 169 DLFKKIIVEAL 179 + + +I AL Sbjct: 168 NKLRTLIKLAL 178 >gi|288553101|ref|YP_003425036.1| ATP-dependent DNA helicase RecG [Bacillus pseudofirmus OF4] gi|288544261|gb|ADC48144.1| ATP-dependent DNA helicase RecG [Bacillus pseudofirmus OF4] Length = 682 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 247/667 (37%), Positives = 386/667 (57%), Gaps = 29/667 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +GVG++ + ++ + N DL+ + P + D + +ER VT Sbjct: 8 PVTEVKGVGEETAKQMAGM------NVHTVQDLIEHFPFRYEDYQLKDLQDTKHDER-VT 60 Query: 72 ITGYISQHSSFQL----QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 + G + S + + R ++L+N IT+ FF R LK F G+++TVTG Sbjct: 61 VVGVVQSEPSIRYYGKKKNRLSVRLLVNQIL--ITVTFFNRA--FLKKYFQIGQEVTVTG 116 Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLP 186 K + + I + + P VYS+ L+ KK I +A+ + +P Sbjct: 117 KWDQHRMTIAGSECYPGRVEKEQTIVP----VYSVSGKLTSKSLKKYIYQAMQQYGEDIP 172 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK- 245 E + + L+K P+ EA +H P K E T AR R+ Y+E L Q+ + RK Sbjct: 173 EVLPESFLEKYKLPTKREAIYRLHYPSKD---EATKHARRRMVYEEFLFFQLKMQAYRKI 229 Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 ++ +G+P+ ++ + + +PF T +Q+ +KDIL D+ RM R+LQGDVGSG Sbjct: 230 NREQSVGVPLMLDRNKVRDFVSGLPFPLTGAQKRVVKDILHDIESDYRMNRLLQGDVGSG 289 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA + M A V+AG QA +M P ILA+QH +K + I VE+++G++ RR Sbjct: 290 KTIVAAVCMYAVVQAGKQAALMVPTEILAEQHVSSLKPLLEPFGIEVELLSGSVKGKKRR 349 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LER+ G+ HI +GTHAL Q+ + ++ L LVI DEQHRFGV+QR L K P VL Sbjct: 350 ERLERLESGEMHIAVGTHALIQEDVIFHDLGLVITDEQHRFGVEQRRVLRDKGEHPDVLF 409 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL ++ GD+D+S I E PAGRK I+T + +D V+ ++ L G++A Sbjct: 410 MTATPIPRTLAISVFGDMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFIEKELQAGRQA 469 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y ICP IEE + + ++ ++ L +H+ + ++HGR+ +K+ VM++F + + Sbjct: 470 YVICPLIEESESLDVQNAIDVHAILQQHYGGKFKVGLMHGRLHPKEKDEVMEAFSENSTQ 529 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTV+EVG++V +A++++I +AE FGLAQLHQLRGRVGRGE S CILL P S+ Sbjct: 530 ILVSTTVVEVGVNVPNATVMVIYDAERFGLAQLHQLRGRVGRGEAQSYCILLADPK-SEV 588 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKD 662 R+ ++ T DGF+++E DL+ R G+ G KQSG+P F +A +HD LE+AR+D Sbjct: 589 GKERMRIMTETNDGFVLSERDLELRGPGDFFGSKQSGLPNFKVADV-VHDYRALEVARQD 647 Query: 663 AKHILTQ 669 A ++ + Sbjct: 648 AAELVNK 654 >gi|126441636|ref|YP_001060336.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 668] gi|126221129|gb|ABN84635.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 668] Length = 902 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 246/662 (37%), Positives = 372/662 (56%), Gaps = 29/662 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D + E+ G + + +R+ L +D Sbjct: 229 TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 288 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 E+ L F +K + G+++ V G ++ + +VHP + D + PL +A Sbjct: 289 AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQA 344 Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 VY G+S +K I AL+R P+ LP I + LQ P +A+A ++H+P Sbjct: 345 LTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHHP 404 Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IAQ 263 D + T PA R+ +DELLA Q++L ++ + + + + ++ Sbjct: 405 GVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRVAPAMPRRARDDGAALSA 464 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 ++ +PF+ T +QE + +I D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q Sbjct: 465 RLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQ 524 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 A +MAP ILA+QH ++ + + + V + G++ +R ALE A G A ++IGTH Sbjct: 525 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTH 584 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRT 434 A+ QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRT Sbjct: 585 AMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRT 644 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L +T D+D+S I E P GR PI T ++ R DEVI R++ G++ YW+CP IEE Sbjct: 645 LAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEE 704 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ VE + +L + ++HGR++ +K +VMD+F +LL+ATTVIEV Sbjct: 705 SETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEV 764 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+L+Y PLS RL ++ Sbjct: 765 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRE 824 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 T DGF IA DL+ R GE LG +QSG A E L+E AR A ++ P++ Sbjct: 825 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEV 884 Query: 674 TS 675 + Sbjct: 885 VA 886 >gi|206561640|ref|YP_002232405.1| ATP-dependent DNA helicase RecG [Burkholderia cenocepacia J2315] gi|198037682|emb|CAR53625.1| putative ATP-dependent DNA helicase [Burkholderia cenocepacia J2315] Length = 743 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 241/660 (36%), Positives = 367/660 (55%), Gaps = 25/660 (3%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D I E+ I G + + + RR + + D Sbjct: 70 TRSIDLVLHLPMRYEDETTLTPIGELLPGGIAQTEGVVFDNE-VAYRPRRQLVVKIRDDD 128 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIE 157 GE +L F G+++ V G ++ + MVHP + D P ++ Sbjct: 129 GEQLVLRFLNFYGSQVKQMAVGQRLRVRGDVRGGFFGMEMVHPAVRVVEA-DAPLPQVLT 187 Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 VY G+S +K I A+ R P+ LP I++D L+ P++ +A I+H+PR Sbjct: 188 PVYPSTAGVSQAYLRKAIENAVERTPLPELLPPEIQRDYLKPLDVPTLEQAVRILHHPRV 247 Query: 215 AKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG--IPINVE---GKIAQKI 265 D + + PA R+ ++ELLA Q++L ++ + +P + ++ Sbjct: 248 DSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAAPAMPRRTARDADALTTRL 307 Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 +PF+ T +Q + +I D++ + M R+LQGDVGSGKT+VA +A A++AG QA Sbjct: 308 YAALPFTLTGAQARVVDEIAHDLTLAHPMQRLLQGDVGSGKTVVAALAATQAIDAGYQAA 367 Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +MAP ILA+QH ++ + + + V + G++ +R A+E A G A ++IGTHA+ Sbjct: 368 LMAPTEILAEQHARKLRAWLEPLGVTVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTHAI 427 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLV 436 QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRTL Sbjct: 428 IQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAANGARDFQPHQLMMSATPIPRTLA 487 Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496 +T D+++S I E P GR P+ T ++ R DEVI R++ G++ YW+CP IEE + Sbjct: 488 MTYYADLEVSTIDELPPGRTPVLTRVVGDARRDEVIARVREAALTGRQVYWVCPLIEESE 547 Query: 497 ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555 ++ VE + +L + ++HGR+S DK +VM++F +LL+ATTVIEVG+ Sbjct: 548 TLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMEAFTRNEVQLLVATTVIEVGV 607 Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615 DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+LLY PLS RL ++ T Sbjct: 608 DVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYSGPLSLTGRERLKTMRETT 667 Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 DGF IA DL+ R GE LG +QSG A E L++ AR+ A ++ P++ + Sbjct: 668 DGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLIDPAREAAARLIAAYPEVVT 727 >gi|146309754|ref|YP_001174828.1| ATP-dependent DNA helicase RecG [Enterobacter sp. 638] gi|145316630|gb|ABP58777.1| ATP-dependent DNA helicase RecG [Enterobacter sp. 638] Length = 693 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 254/671 (37%), Positives = 371/671 (55%), Gaps = 28/671 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL++ GVG S L+KI DLL + P + DR I ++ T Sbjct: 10 PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTQLYAIGDLLPGIYAT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G I + + RR ++DG+G +TL FF M KN GR++ G+ K+ Sbjct: 64 VEGEIL-NCNVTFGGRRMMTCQISDGSGILTLRFFNFSAAM-KNGLAAGRRVLAYGEAKR 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPV--L 185 K M+HP Y D++ P ++ VY G+ +K+ +AL L + Sbjct: 122 GKFGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGIKQATLRKLTDQALELLDTCAI 179 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDELLAGQIALL 241 E + +L Q S+ EA +H P + D E PA+ RL +ELLA +++L Sbjct: 180 TELLPPELAQ--GMMSLPEAIRTLHRPPPSLQLSDLESGQHPAQRRLILEELLAHNLSML 237 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R ++ +P+ + K+L ++PF PT +Q +I D++Q M+R++QGD Sbjct: 238 ALRAGAQRFHALPLTARDDLKDKLLASLPFKPTHAQARVTAEIEHDLAQDVPMMRLVQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA +A A+ G Q +MAP +LA+QH + + + V + G Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRSWFAPLGVEVGWLAGKQKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R E IA G +I+GTHA+FQ+ +++ L LVI+DEQHRFGV QRL L +K Sbjct: 358 KARIAQQEAIASGLVQMIVGTHAIFQEQVKFKGLALVIIDEQHRFGVHQRLALWEKGLQQ 417 Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++I+R++ Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRRSDIIDRVRN 477 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535 EG++AYW+C IEE + ++ + L I ++HGRM DK+ VM Sbjct: 478 ACTQEGRQAYWVCTLIEESELLEAQAAEVTWEDLKLALPELQIGLVHGRMKSADKQQVMQ 537 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK G LLIATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LL Sbjct: 538 RFKQGELHLLIATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 + PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A ++ Sbjct: 598 FKSPLSKTAQMRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657 Query: 656 LEIARKDAKHI 666 + ++ A+HI Sbjct: 658 IPEVQRLARHI 668 >gi|90415469|ref|ZP_01223403.1| ATP-dependent DNA helicase RecG [marine gamma proteobacterium HTCC2207] gi|90332792|gb|EAS47962.1| ATP-dependent DNA helicase RecG [marine gamma proteobacterium HTCC2207] Length = 705 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 246/656 (37%), Positives = 362/656 (55%), Gaps = 32/656 (4%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75 RGVG S L K+ DLLF+ P +IDR I + V I G Sbjct: 14 LRGVGPLLSAKLQKL------GLYTIQDLLFHLPLRYIDRTKITAIGGVQPLTEVVIEGE 67 Query: 76 ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 + + S +RR + D +G ITL FF+ + + G K+ G++++ K+ Sbjct: 68 V-RGSDVVFGRRRSLVCRVQDHSGLITLRFFH-FNQAQQQGLQPGTKVRCFGEVRRGKSG 125 Query: 136 IIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPEWIEK 191 + M HP Y + + SQ + +Y G++ + + +AL L + +W+ Sbjct: 126 LEMYHPEYQLLNQSQPPALAETLTPIYPATEGVTQQRIRDLCGQALKLLEQQGIEDWMPA 185 Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQF 247 L S + +A +++HNP E PA++RLA +EL+A ++LL +R++ Sbjct: 186 ALNNGSSNYCLVDALHLLHNPPPGTALNLLAEGEHPAQQRLASEELVAHHLSLLRLRQKI 245 Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 + + + ++ L +PF+ T +Q+ +I D+SQ MLR++QGDVGSGKT Sbjct: 246 QHQAAPALLPNQSATERFLAQLPFTLTGAQQRVTNEISADISQPIPMLRLIQGDVGSGKT 305 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +VA + AV G QA +MAP ILA+QH + + I + +TG R Sbjct: 306 VVAALGAVQAVANGMQAALMAPTEILAEQHRVNFESWLAPLGIRIAWLTGKFKGKGREVQ 365 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK---------- 417 L IA G A I+IGTHALFQ+++ ++ L L I+DEQHRFGV QRL L +K Sbjct: 366 LAAIADGSAQIVIGTHALFQEAVAFHNLGLTIIDEQHRFGVHQRLALRKKGAVIDAQIDE 425 Query: 418 -----ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 A+ PH L+MTATPIPRTL +++ D+D S I E P GRKPI+TV++ R ++VI Sbjct: 426 EGYGEASTPHQLIMTATPIPRTLAMSAYADLDCSVIDELPPGRKPIETVVLNDLRRNDVI 485 Query: 473 ERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531 ER++ +G++AYW+C IEE + SI +IHGR+ +K Sbjct: 486 ERVRASCQDGRQAYWVCTLIEESDVLEAQAAEATAQELQLLLSELSIGLIHGRLKPKEKV 545 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 +M +FK G LL+ATTVIE+G+DV +AS++IIEN+E GL+QLHQLRGRVGRG + S Sbjct: 546 QIMQAFKAGEINLLVATTVIEIGVDVPNASLMIIENSERLGLSQLHQLRGRVGRGTQSSH 605 Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 C+LLY PLS N RL +++ T DGF IAE+DL+ R GE+LG +Q+G +F IA Sbjct: 606 CVLLYSAPLSGNGAARLKIMRETNDGFKIAEKDLEIRGPGEVLGTRQTGDMQFRIA 661 >gi|91202709|emb|CAJ72348.1| similar to DNA helicase [Candidatus Kuenenia stuttgartiensis] Length = 686 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 254/680 (37%), Positives = 381/680 (56%), Gaps = 19/680 (2%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L P+ G+G K S KII G DLL+Y P + D KI+E Sbjct: 5 LLQPVQYLNGIGPKRS----KII--GRLGIQTVHDLLYYFPRDYNDFSKIQKIAEAKTGD 58 Query: 69 IVTITGYISQ-HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 +TI G I+ + + ++ ++D TG I +F L N F G ++ + G Sbjct: 59 SITIQGTINGIQNRVARMGKTILEVFVSDETGVIAATWF--NQPFLVNKFRIGDRLFLHG 116 Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSR-LPVL 185 K+ K ++ + I + Q I VY L +S +KII A+ + +L Sbjct: 117 KVNSYKYLQLLSPEYEIISDRQAGGSGWGIIPVYPLTEHISQSQLRKIIHAAIQEYVDLL 176 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 + + L++K +F +A+A IH+P E + A+ RL Y+EL ++A+ L R Sbjct: 177 EDALPLPLIKKYNFLPVADAIRHIHSP---PSMELLNRAKNRLVYEELFCLEMAMALRRY 233 Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + K E IP + I IPF+ TK+QE I +I +DM M R+LQGDVGSG Sbjct: 234 RIKGETRIPFKAGANVDAHIRNIIPFTLTKAQERVIYEIREDMKSDKPMNRLLQGDVGSG 293 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VAL A AV G QA MAP +LAQQH+ ++K+ +Q+ V ++TG+ H++ Sbjct: 294 KTVVALYAALIAVANGYQATFMAPTELLAQQHFRTLQKFLSGSQVRVCLLTGSGNATHKK 353 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + +++ G +I+GTHA+ ++S+ + KL LV++DEQH+FGV QRLKL +K +P VL+ Sbjct: 354 NVIAQVSDGGIDLIVGTHAIIEESVSFKKLGLVVIDEQHKFGVLQRLKLRKKGASPDVLI 413 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL LT GD+DIS + E P GR P+KT + N+ + ++ +S+GK+ Sbjct: 414 MTATPIPRTLSLTLFGDMDISMLDEMPPGRIPVKTFWVSKNKEKAAYDFIRGEISKGKQV 473 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543 + + P +E ++ + +S + L + ++HG+M +KE M FK Sbjct: 474 FVVYPLVEHSEKLDLKSAITEAERLRNEIFPECKVGLLHGKMKSAEKEQAMADFKERRYD 533 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++T +IEVGIDV +A+I++IE+AE FGLAQLHQLRGR+GRG + S C LL+ P + Sbjct: 534 ILVSTIIIEVGIDVPNATIMVIEHAERFGLAQLHQLRGRIGRGGKQSYC-LLFGTPKTAL 592 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKD 662 S RL + NT DGF IAE D + R GE G +Q G+P+ I+ HD SLL+ ARKD Sbjct: 593 SRDRLRTMVNTSDGFKIAEMDFRLRGPGEFFGTRQHGLPELKISNI-FHDFSLLQKARKD 651 Query: 663 AKHILTQDPDLTSVRGQSIR 682 A I+ +DP L++ Q I+ Sbjct: 652 AFEIVCRDPSLSAEEHQKIK 671 >gi|332708716|ref|ZP_08428688.1| ATP-dependent DNA helicase RecG [Lyngbya majuscula 3L] gi|332352570|gb|EGJ32138.1| ATP-dependent DNA helicase RecG [Lyngbya majuscula 3L] Length = 828 Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust. Identities = 241/681 (35%), Positives = 392/681 (57%), Gaps = 35/681 (5%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+ VG K S +L+++ ++ R DLL+Y+P I+ + ++++ VT Sbjct: 134 PLAKLAAVGSKNSEYLARL----GLHKVR--DLLYYYPRDHINYARQVNMADLVPGETVT 187 Query: 72 ITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFY-------RKTE-MLKNVFFEG 120 I G + + + F + + IL L D TG+I L F+ R + K + G Sbjct: 188 IMGTVKRCNCFSSPRNKKLTILDIVLKDSTGQIKLSRFFAGFRYSNRSWQYQQKRRYPVG 247 Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVN---FPLIEAVYSLPTGLSVDLFKKII 175 + +G +KK K I + P + H ++ + VYSL G+ D+ ++ I Sbjct: 248 AVVAASGLVKKNKYGITLEDPELEVLEHPGGTIDSMKIGRVVPVYSLTEGVPADMVRRAI 307 Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235 + AL ++ E + ++ + +A IH P+ A + AR RL +DE L Sbjct: 308 IAALPYTSLIKEPLPVTFRKEYGLMGVCDAIANIHFPQNADTL---ADARRRLVFDEFLY 364 Query: 236 GQIALLLMRKQFKK----EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 Q+ L R+ +K + PI GK+ + + +PF T +Q I +IL+DM + Sbjct: 365 LQLGFLQRRQAQRKTQSSAVMAPI---GKLFDQFNQLLPFELTGAQTRVINEILKDMESE 421 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351 M R++QGDVGSGKT+VA+ A+ AA+++G QA +MAP +LA+QHY + + + Sbjct: 422 TPMNRLVQGDVGSGKTIVAVYAIIAAIQSGYQAALMAPTEVLAEQHYRKLVNWFNLLHLP 481 Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411 VE++TG+ + RRK ++ G+ +++GTHAL QD + + L LV++DEQHRFGV+QR Sbjct: 482 VELLTGSTKVSKRRKIHSQLETGELPLLVGTHALIQDPVNFNNLGLVVIDEQHRFGVKQR 541 Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471 +L QK +PHVL +TATPIPRTL LT GD+D+S+I E P GR+ I+T ++ Sbjct: 542 ARLQQKGQSPHVLTLTATPIPRTLALTLHGDLDVSQIDELPPGRQKIQTTVLRGKERKHA 601 Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDID 529 + ++ +++G++AY + P IEE + + RSV+E L E + ++HGRM+ D Sbjct: 602 YDLIRREVAQGRQAYMVLPLIEESNKLDLRSVIEEHKRLSESIFPEFKVGLLHGRMNSAD 661 Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589 K+ + +F++ +++++TTVIEVG+DV +A++++IENAE FGL+QLHQLRGRVGRG + Sbjct: 662 KDKALSAFRDNKSQIIVSTTVIEVGVDVPNATVMMIENAERFGLSQLHQLRGRVGRGSDK 721 Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649 S C+L+ ++ + RL VL+ ++DGF I+E D++ R GE+LG +QSG+ F +A Sbjct: 722 SYCLLVSGSN-TETARQRLGVLEQSQDGFFISEMDMRFRGPGEVLGKRQSGLADFALASL 780 Query: 650 ELHDSLLEIARKDAKHILTQD 670 +L +AR A+ I+ QD Sbjct: 781 VEDQEVLNLARDAAEKIILQD 801 >gi|254423977|ref|ZP_05037695.1| ATP-dependent DNA helicase RecG [Synechococcus sp. PCC 7335] gi|196191466|gb|EDX86430.1| ATP-dependent DNA helicase RecG [Synechococcus sp. PCC 7335] Length = 872 Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust. Identities = 237/690 (34%), Positives = 393/690 (56%), Gaps = 29/690 (4%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP +PL PL+ RG+G + L+K+ D+LFY+P +ID + KI Sbjct: 164 RPDSTHPLDKPLTYLRGIGAHKAEKLAKL------GLLSLRDVLFYYPRDYIDYARQVKI 217 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTGEITLLFFYRKT-------- 110 ++ VT+ + + S F + +++ + D T + + F T Sbjct: 218 KDLVPGETVTLVATVKKCSCFNSPRNSKLTIFEMTVYDATSRLKISRFLAGTHFRSRGWQ 277 Query: 111 EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD-----VNFPLIEAVYSLPTG 165 E K ++ G + ++G +K+ K I + P D + + VY L G Sbjct: 278 ERQKRLYPPGAVVAISGLVKQTKYGINIDSPEIEVLGGPDEAIASLTVGRVVPVYPLTEG 337 Query: 166 LSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR 225 + D+ +K +V AL + L + + L QK +A A IH P E + AR Sbjct: 338 VGADIVRKAVVAALPAVVELRDPLPSALRQKYELVELAAAIAHIHFPPST---EALAVAR 394 Query: 226 ERLAYDELLAGQIALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284 RL +DE Q+ LL R ++ + + G++ + + +PF T +Q+ ++I Sbjct: 395 RRLVFDEFFYLQLGLLRRRAAQQQAQTSVQVAPTGQLIEAFYKVLPFQFTNAQQRVAQEI 454 Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344 L D+ + M R++QGDVGSGKT+VA++ + AA++AG QA +MAP +LA+QHY + ++ Sbjct: 455 LNDLQKTAPMNRLVQGDVGSGKTVVAVVGILAAIQAGYQAALMAPTEVLAEQHYRKLVEW 514 Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404 + VE++TG+ A RR+ + G+ +++GTHAL +D +Q++ L LV +DEQH Sbjct: 515 FNLLHLPVELLTGSTRAAKRRQIHSELLTGELPVLVGTHALIEDPVQFHNLGLVTIDEQH 574 Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464 RFGV QR KL QK PHVL +TATPIPRTL LT GD+D+S+I E P GRK +KT ++ Sbjct: 575 RFGVAQRAKLQQKGDNPHVLTLTATPIPRTLALTIHGDLDVSQIDELPPGRKAVKTTVLG 634 Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIH 522 + + ++ + +G++ Y + P +EE ++ + RS +E + L E + ++H Sbjct: 635 AKERSDAYDLIRREIVQGRQVYIVLPLVEESEKLDLRSAIEEGDRLQETIFPDFQVGLLH 694 Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582 GRMS +DK++ + +F++ T ++L++TTV+EVG+D+ +A++++IE+AE FGL+QLHQLRGR Sbjct: 695 GRMSSVDKDAAISAFRDQTTQILVSTTVVEVGVDIPNATVMLIEHAERFGLSQLHQLRGR 754 Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642 VGRG + S C+L+ + S + RL V++ ++DGF I+E D++ R G++LG +QSG+P Sbjct: 755 VGRGGDQSFCLLMTNSK-SDVAMQRLRVMEQSQDGFFISEMDMRFRGPGQVLGTRQSGLP 813 Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPD 672 F +A +LE+AR A ++L Q+ + Sbjct: 814 DFALASLVEDQDVLELARTAAGNVLAQESE 843 >gi|217420629|ref|ZP_03452134.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 576] gi|217396041|gb|EEC36058.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 576] Length = 902 Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust. Identities = 249/663 (37%), Positives = 372/663 (56%), Gaps = 31/663 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D + E+ G + S + RR + L D Sbjct: 229 TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-SEIAYRPRRQLLVKLRDDD 287 Query: 99 G-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157 G E+ L F +K + G+++ V G ++ + +VHP + D + PL + Sbjct: 288 GAELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQ 343 Query: 158 A---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHN 211 A VY G+S +K I AL+R P+ LP I + LQ P +A+A ++H+ Sbjct: 344 ALTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHH 403 Query: 212 PRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IA 262 P D + T PA R+ +DELLA Q++L ++ + + + ++ Sbjct: 404 PGVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRARDDGAALS 463 Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 ++ +PF+ T +QE + +I D++Q + M R+LQGDVGSGKT+VA +A A A++AG Sbjct: 464 ARLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGY 523 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 QA +MAP ILA+QH ++ + + + V + G++ +R ALE A G A ++IGT Sbjct: 524 QAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGT 583 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPR 433 HA+ QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPR Sbjct: 584 HAMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPR 643 Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493 TL +T D+D+S I E P GR PI T ++ R DEVI R++ G++ YW+CP IE Sbjct: 644 TLAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIE 703 Query: 494 EKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552 E + ++ VE + +L + ++HGR++ +K +VMD+F +LL+ATTVIE Sbjct: 704 ESETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIE 763 Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612 VG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+L+Y PLS RL ++ Sbjct: 764 VGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMR 823 Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 T DGF IA DL+ R GE LG +QSG A E L+E AR A ++ P+ Sbjct: 824 ETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPE 883 Query: 673 LTS 675 + + Sbjct: 884 VVA 886 >gi|94311874|ref|YP_585084.1| ATP-dependent DNA helicase RecG [Cupriavidus metallidurans CH34] gi|93355726|gb|ABF09815.1| ATP-dependent DNA helicase [Cupriavidus metallidurans CH34] Length = 737 Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust. Identities = 244/663 (36%), Positives = 366/663 (55%), Gaps = 33/663 (4%) Query: 40 RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRRPYKILLND 96 R +DL+ + P + D I + + + I + + RR + + D Sbjct: 59 RSVDLVLHLPLRYEDETTLEPIRDAIHRAGIGLPAQIEGEVISNEVTFRPRRQLVVKVAD 118 Query: 97 GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI 156 TGE+TL F K EG ++ V G+I+ MVHP + + Sbjct: 119 ETGELTLRFLNFYGGQTKQ-MAEGTRLRVRGEIRGGFFGAEMVHPTVRAVTPGEPLPDRL 177 Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP- 212 VY G+S +K I A+ R P+ LP+ + + L + P + + ++HNP Sbjct: 178 TPVYPATAGISQAYLRKAIGGAMQRTPMPETLPQAVLRGPLAQLKLPPLIDCLRLLHNPP 237 Query: 213 ---RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF-KKEIGIPI--NVEGKIAQKIL 266 +A + + PA R+ +DELLA QI+L R Q +KE P G + L Sbjct: 238 QQESEAALADRSHPAWVRIKFDELLAQQISL--RRSQAARKEKNAPSMPRRAGGLLTSFL 295 Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 +PF T +Q+ +++I DM++ + M R+LQGDVGSGKT+VA +A A++AG QA + Sbjct: 296 GALPFRLTGAQQRVVEEIAADMARPHPMHRLLQGDVGSGKTIVAALAACQAIDAGYQAAL 355 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 MAP ILA+QH+ + + + + V + G++ +R+A+ R G+A ++IGTHAL Sbjct: 356 MAPTEILAEQHFRKLSAWLEPLGVPVVWLAGSLKAKEKREAVARAESGEAKLVIGTHALI 415 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----------------TAPHVLLMTATP 430 QD++++ +L L +VDEQHRFGV QRL L KA PH L+M+ATP Sbjct: 416 QDTVRFARLGLAVVDEQHRFGVAQRLALRGKAGEADQPGEPARPAEEKVVPHQLMMSATP 475 Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490 IPRTL +T D+D+S I E P GR PI T ++ R DEVIER+ +EG++ YW+CP Sbjct: 476 IPRTLAMTYYADLDVSVIDELPPGRTPIVTRLVNDARRDEVIERVHHAAAEGRQVYWVCP 535 Query: 491 QIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549 IEE + ++ VE + +L + ++HGR+ +K +VMD F ++L+ATT Sbjct: 536 LIEESEALQLQTAVETYETLVAALPDLRVGLVHGRLPPAEKAAVMDDFTANRLQVLVATT 595 Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609 VIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+L+Y PLS + RL+ Sbjct: 596 VIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAESVCLLMYQAPLSPTARERLA 655 Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669 ++ T DGF IA DL+ R GE LG +QSG A E L++ A++ A+ +L + Sbjct: 656 TMRETTDGFEIARRDLQIRGPGEFLGARQSGEAMLRFADLETDAWLVDYAQEAAELMLER 715 Query: 670 DPD 672 P+ Sbjct: 716 YPE 718 >gi|115350668|ref|YP_772507.1| ATP-dependent DNA helicase RecG [Burkholderia ambifaria AMMD] gi|115280656|gb|ABI86173.1| ATP-dependent DNA helicase RecG [Burkholderia ambifaria AMMD] Length = 785 Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust. Identities = 242/662 (36%), Positives = 366/662 (55%), Gaps = 29/662 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D I E+ I G + + + RR + + D Sbjct: 112 TRSIDLVLHLPMRYEDETTLTPIGELLPGGIAQTEGVVFDNE-VAYRPRRQLVVKIQDDD 170 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL--- 155 GE +L F G+++ V G ++ + MVHP +V+ PL Sbjct: 171 GEQLVLRFLNFYGSQVKQMAVGQRLRVRGDVRGGFFGMEMVHPAV---RVVEVDAPLPQV 227 Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 + VY G+S +K I A+ R P+ LP IE+D L+ P++A+A I+H+P Sbjct: 228 LTPVYPSTAGVSQAYLRKAIENAVERTPLPELLPPEIERDYLKPLGVPTLAQAVRILHHP 287 Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IAQ 263 D + + PA R+ ++ELLA Q++L ++ + + + Sbjct: 288 GVDSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRTAPAMPRRAATDADALTT 347 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 ++ +PF+ T +Q + +I D++ + M R+LQGDVGSGKT+VA +A A++AG Q Sbjct: 348 RLYAALPFTLTGAQARVVDEIAHDLTLPHPMQRLLQGDVGSGKTVVAALAATQAIDAGYQ 407 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 A +MAP ILA+QH ++ + + + V + G++ +R A+E A G A ++IGTH Sbjct: 408 AALMAPTEILAEQHARKLRAWLEPLGVSVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTH 467 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRT 434 A+ QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRT Sbjct: 468 AIIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAANGARDFQPHQLMMSATPIPRT 527 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L +T D+++S I E P GR P+ T ++ R +EVI R++ G++ YW+CP IEE Sbjct: 528 LAMTYYADLEVSTIDELPPGRTPVLTRLVGDARREEVIARVREAALTGRQVYWVCPLIEE 587 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ VE + +L + ++HGR+S DK +VM++F +LL+ATTVIEV Sbjct: 588 SETLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMEAFTRNEVQLLVATTVIEV 647 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+LLY PLS RL ++ Sbjct: 648 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYTGPLSLTGRERLKTMRE 707 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 T DGF IA DL+ R GE LG +QSG A E L++ AR A ++ PD+ Sbjct: 708 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLIDPARDAAARLIAAYPDV 767 Query: 674 TS 675 + Sbjct: 768 VT 769 >gi|86610232|ref|YP_478994.1| ATP-dependent DNA helicase RecG [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558774|gb|ABD03731.1| ATP-dependent DNA helicase RecG [Synechococcus sp. JA-2-3B'a(2-13)] Length = 837 Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust. Identities = 245/682 (35%), Positives = 401/682 (58%), Gaps = 31/682 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL +G+G K + L+++ + R D L+Y P ++D R I + VT Sbjct: 143 PLQFLKGIGPKSAEKLAQL----GLHSVR--DALYYFPRDYLDYSRRVLIRQAKVGETVT 196 Query: 72 ITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEM--------LKNVFFEG 120 + G + S F K I + D +G ITL FY + L+ + +G Sbjct: 197 LVGTVKSCSCFTSPKNPSLTIFNLKIADKSGVITLSRFYSGRQFAQRSWQASLERQYPKG 256 Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVN-FPLIEAVYSLPTGLSVDLFKKIIVE 177 + +G +KK + + + +P + ++++ I VY L G+ DL +K + Sbjct: 257 ALVAASGLVKKGRLGLTLDNPQLEVLGGEGEELDRLGKILPVYPLSEGIPADLVRKAVQL 316 Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237 AL ++ + + DL ++ + A IH P + E + AR RL +DE Q Sbjct: 317 ALPAAALVEDPLPADLKRQLQLLDLPVALQQIHFP---ETRELLAQARRRLVFDEFFYLQ 373 Query: 238 IALLLMRKQFKKEI-GIP--INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 ++LL R +++ + IP G++ + + +PF T +Q+ AI +IL D+ M Sbjct: 374 LSLLQRRHRYRAQAQAIPRYQPARGELLDRFYQILPFQLTAAQQRAIDEILADLRDPLPM 433 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R+LQGDVGSGKT+VA+ A+ AA+++G QA +MAP +LA+QHY + ++ Q+ VE+ Sbjct: 434 NRLLQGDVGSGKTVVAVAAVLAAIQSGWQAALMAPTEVLAEQHYRKLVEWLSQLQVPVEL 493 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 +TG+ P A RR+ L ++ G+ +++GTHAL Q ++Q+ L LV++DEQHRFGV+QR L Sbjct: 494 LTGSTPPAKRREILRQLQTGELPLVVGTHALIQPAVQFRNLGLVVIDEQHRFGVEQRAAL 553 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII-PINRIDEVIE 473 QK P VL MTATPIPRTL L GD+D+++I E P GRKP+ T++ P +R+ +V+ Sbjct: 554 QQKGDHPDVLTMTATPIPRTLTLALHGDLDVTQIDELPPGRKPVHTLVARPGDRL-QVMR 612 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKE 531 ++ +++G++AY + P IEE ++ + +S +E L E ++++HGR++ +KE Sbjct: 613 LIEREIAQGRQAYVVLPLIEESEKLDLKSAIEEHQRLQEKVFPQFRVSLLHGRLTSSEKE 672 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 +V+ +F+ +L++TTV+EVG+DV +AS++++E+AE FGL+QLHQLRGRVGRG + + Sbjct: 673 AVIAAFRRRELDILVSTTVVEVGVDVPNASVMLVEHAERFGLSQLHQLRGRVGRGSDQAY 732 Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 CIL+ S+ + RL VL+ + DGF IAE DL+ R GE++G +QSG+P F +A Sbjct: 733 CILMTGSK-SEEALRRLKVLEQSHDGFFIAEMDLRFRGPGEVMGTRQSGLPDFALASLME 791 Query: 652 HDSLLEIARKDAKHILTQDPDL 673 +L++AR+ A+ ++ QDPDL Sbjct: 792 DQEVLQLARQAAEQLIVQDPDL 813 >gi|30249802|ref|NP_841872.1| RecG-like helicases [Nitrosomonas europaea ATCC 19718] gi|30180839|emb|CAD85761.1| RecG-like helicases [Nitrosomonas europaea ATCC 19718] Length = 685 Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust. Identities = 230/641 (35%), Positives = 363/641 (56%), Gaps = 14/641 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DL+ + P + D IS+ V + G +++ ++ RR ++D +G + Sbjct: 27 DLVLHLPLRYEDETRLSPISQAVPGSTVQVEGVVAEQEVL-VRPRRQLVCRVDDDSGTLY 85 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162 L FF + + G ++ V G+++ + + MVHP V + VY Sbjct: 86 LRFFNFYASQV-TAWSPGTRLRVLGEVRAGFHGVEMVHPKCRVVRGSMVLANTLTPVYPG 144 Query: 163 PTGLSVDLFKKIIVEALSRLP---VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF- 218 GL ++I++A RL +L E + +L FP+ ++ +I+H P Sbjct: 145 MAGLPQRTLARLIMQAFERLRAKRLLQETLPATILSACQFPAFEDSLSILHCPPAGVSIT 204 Query: 219 ---EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275 + + PA R+ +DELLA Q+++ Q + + + + + Q +L +PF T Sbjct: 205 SLQQRSHPAWFRIKFDELLAQQLSMRCHYHQRRSQQAPVLQQQTGLQQALLEVLPFGLTD 264 Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 +Q + +I +D++Q M R+LQGDVGSGKT+VA +A ++ G Q +MAP ILA+ Sbjct: 265 AQCKVVTEISKDLAQPYPMQRLLQGDVGSGKTIVAALAALQSIGNGYQVAVMAPTEILAE 324 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 QH+ + + + V ++G+ ++ R + LER A G+A ++IGTHALF++++Q+ L Sbjct: 325 QHFRKLSDWLTPLGVGVGWLSGSQKKSLRNQELERTATGEAMLVIGTHALFREAVQFKCL 384 Query: 396 ILVIVDEQHRFGVQQRLKLTQKA----TAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451 LVI+DEQHRFGV QRL L K PH L+M+ATPIPRTL ++ D+D+S I + Sbjct: 385 GLVIIDEQHRFGVGQRLALRMKGGDEEVIPHQLMMSATPIPRTLSMSYFADLDVSVIDQL 444 Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511 P GR P+ T +I +R +E++ R++ G++AYW+CP IEE + ++ VE + +L Sbjct: 445 PPGRSPVVTRLIDSSRREEIVARIREACLAGRQAYWVCPLIEESEALQLKTAVETYETLS 504 Query: 512 EHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 + F IA+IHGR+ +K +M F G +LL+ATTVIEVG+DV +AS+++IE+AE Sbjct: 505 QTFPDLRIALIHGRLDSDEKSVIMAEFSQGEVQLLVATTVIEVGVDVPNASLMVIEHAER 564 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630 GL+QLHQLRGR+GRG C+L+Y PLS+ + RL ++ DGF IA +DL R Sbjct: 565 MGLSQLHQLRGRIGRGSATGVCVLMYQQPLSEVARKRLQIIFEHRDGFEIARQDLLLRGP 624 Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671 GE LG +QSG+P A E LLE+AR A+++L P Sbjct: 625 GEFLGTRQSGVPLLRFANLEEDIDLLEMARNAAENMLRDHP 665 >gi|148239657|ref|YP_001225044.1| ATP-dependent DNA helicase [Synechococcus sp. WH 7803] gi|147848196|emb|CAK23747.1| ATP-dependent DNA helicase [Synechococcus sp. WH 7803] Length = 843 Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust. Identities = 239/692 (34%), Positives = 377/692 (54%), Gaps = 43/692 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L APLS RG+G K + L+ + DLL ++P ++D +I + Sbjct: 144 LDAPLSRVRGIGPKQAERLASL------GLLVVRDLLLHYPRDYVDYSALRRIEALVPGE 197 Query: 69 IVTITGYISQHSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK-- 122 TI + + F R P ++ L D TG I + F + G+ Sbjct: 198 TATIVATVRRCHGFT-SPRNPNLSIIELQLQDPTGRIKVSRFLAGRRFSNPSYLHGQTRL 256 Query: 123 ------ITVTGKIK------KLKNRII--MVHPHYIFHNSQDVNFPLIEAVYSLPTGLSV 168 + V+G +K ++ +I M P Q + VYSL GL+ Sbjct: 257 YPNGATVAVSGLVKDGPYGRSFQDPLIEVMESPQAPL---QSKRIGRLLPVYSLTEGLTA 313 Query: 169 DLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERL 228 D F+ ++ L + + PE + Q + +A IH P ++ + AR RL Sbjct: 314 DRFRSLVEATLPSIRLWPEPLPAQRRQARQLLHRHQAMTAIHRPESSEQLQQ---ARHRL 370 Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEGK---IAQKILRNIPFSPTKSQESAIKDIL 285 +DE L Q+ L+ R ++ + + + + L N+PF T +Q + +I Sbjct: 371 VFDEFLLLQLGLMQRRAALRQRTAPSLKITSDRDGLLSRFLNNLPFQFTNAQTRVLAEID 430 Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345 D+ + M R++QGDVGSGKT+VA+ A+ A++AG Q +MAP +LA+QHY + ++ Sbjct: 431 ADLERSEPMARLVQGDVGSGKTVVAVAALLKAIQAGLQGAMMAPTEVLAEQHYRSLCQWL 490 Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405 + VE++TG+ P RR+ L +A G +++GTHAL +D + + +L LV+VDEQHR Sbjct: 491 PPLHVTVELLTGSTPLKKRRRLLADVASGACKVLVGTHALLEDPVAFERLGLVVVDEQHR 550 Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465 FGV+QR +L K PH+L MTATPIPRTL L+ GD+D+S+I E P GR PI T ++ Sbjct: 551 FGVRQRNRLLGKGLQPHLLTMTATPIPRTLALSLHGDLDVSQIDELPPGRTPIMTTMLAG 610 Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHG 523 + D+ ++ + +G++AY + P +EE ++ + RS V+ L + + ++HG Sbjct: 611 SERDQAYSLIREEVEKGQRAYVVLPLVEESEKMDLRSAVDVHRQLEDEVFPDLKVGLLHG 670 Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583 R+ +DK++V+ +F G ++L++TTV+EVG+DV +AS+++I++A+ FGLAQLHQLRGRV Sbjct: 671 RLPSVDKQAVIQAFAKGETQVLVSTTVVEVGVDVPEASVMMIDHADRFGLAQLHQLRGRV 730 Query: 584 GRGEEISSCILLYHP--PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641 GRG S C+L+ PL++ RL VL + DGF IAE DL+ R G++LG +QSG+ Sbjct: 731 GRGAAASRCLLINDSRNPLARQ---RLEVLVRSTDGFEIAEMDLRLRGPGQVLGTRQSGL 787 Query: 642 PKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 P +A S+LE AR++A IL DPDL Sbjct: 788 PDLALASLADDGSVLEEAREEAADILRNDPDL 819 >gi|329118091|ref|ZP_08246803.1| DNA helicase RecG [Neisseria bacilliformis ATCC BAA-1200] gi|327465751|gb|EGF12024.1| DNA helicase RecG [Neisseria bacilliformis ATCC BAA-1200] Length = 679 Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust. Identities = 239/636 (37%), Positives = 355/636 (55%), Gaps = 8/636 (1%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DL+ + P + D + + + + G + H + R+ + + D G + Sbjct: 29 DLVLHLPLRYEDETHIMPLQDAPVGVPCQVEGTVL-HQEVMFKPRKQLIVQIGDNAGNVL 87 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162 L F + G++I G+IK M+HP + + L VY Sbjct: 88 FLRFIHFYPSQQKQLAVGKRIRAVGEIKHGFYGDEMIHPKIRDAETGGLAESLT-PVYPT 146 Query: 163 PTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS 222 GL+ ++II AL P L + + LL + P +AE+ ++H P + + S Sbjct: 147 VNGLNQPTLRRIIQTALDDTP-LHDTLPDALLGRLKLPHLAESLRLLHAPPPSLSVQQLS 205 Query: 223 ----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 PA +RL +DELLA Q+++ L R++ P+ G ++Q +L +PF+ T +QE Sbjct: 206 DGALPAWQRLKFDELLAQQLSMRLARQKRISGQAAPLTGNGTLSQPLLNALPFALTCAQE 265 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 A+ +I QDM+Q M R+LQGDVGSGKT+VA ++ AA+EAG Q +MAP ILA+QH+ Sbjct: 266 KALAEIRQDMAQTFPMHRLLQGDVGSGKTIVAALSALAAIEAGAQVAVMAPTEILAEQHF 325 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 K++ + + ++G+ + + +A +++ G I +GTHALFQD + + L LV Sbjct: 326 IKFKQWFDPLGLDIAWLSGSQRKKAKDEAKAQLSDGLVKIAVGTHALFQDDVAFQNLGLV 385 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDEQHRFGV QRL L K H L+M+ATPIPRTL ++ D+D+S I E P GR PI Sbjct: 386 IVDEQHRFGVAQRLALKNKGRDVHQLMMSATPIPRTLAMSFFADLDVSLIDELPPGRTPI 445 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517 +T ++ R EV L + +G++AYW+CP IEE + ++ E L + Sbjct: 446 QTRLVNSLRRAEVEGYLLGICRKGQQAYWVCPLIEESETLQLQTATETLEQLQTALPELN 505 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 I ++HGRM +K +VM F G +L+ATTVIEVG+DV +A++++IE+AE GLAQLH Sbjct: 506 IGLVHGRMKATEKATVMAEFAAGRLNVLVATTVIEVGVDVPNAALMVIEHAERMGLAQLH 565 Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637 QLRGRVGRG S C+LL+ PLS+ + RL V+ DGF IA +DL R GE LG + Sbjct: 566 QLRGRVGRGAAKSVCVLLFAEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGAR 625 Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 QSG+P A E LLE AR A ++ Q+PD+ Sbjct: 626 QSGVPMLRFANLEQDLHLLERARDIAPQLIEQNPDI 661 >gi|294627104|ref|ZP_06705692.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294667377|ref|ZP_06732595.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292598537|gb|EFF42686.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292602818|gb|EFF46251.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 717 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 253/700 (36%), Positives = 386/700 (55%), Gaps = 52/700 (7%) Query: 11 APLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69 A LS+ GVG K + F ++ I DL + P + DR I+++ Sbjct: 17 ARLSSLPGVGPKVADRFAARGI-------LSVQDLWLHLPLRYEDRTRLTTIAQLQGGVP 69 Query: 70 VTITGYISQ-HSSFQLQKRRP-YKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVT 126 I G + F+ RP ++ ++D + G + L FF+ + + F G ++ V Sbjct: 70 AQIEGRVEAVERGFRF---RPVLRVAVSDASHGTLVLRFFHFRAAQVAQ-FAVGTRVRVF 125 Query: 127 GKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLP- 183 G K ++ +VHP Y + +D ++ VY + G+ +K+I +AL RLP Sbjct: 126 GTPKPGQHGWEIVHPSYRVLAPDEDAGLGDSLDPVYPVLEGVGPATLRKLIGQALERLPP 185 Query: 184 ------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDEL 233 + P W LQ + PS+ A +H P D PA++RLA +EL Sbjct: 186 ESALELLPPHW-----LQDERLPSLRAALLTMHRPPVGTDPQQLLAGGHPAQQRLAIEEL 240 Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 LA Q++L R ++ + G + Q++ + +PF T +Q+ + I D++Q + Sbjct: 241 LAHQLSLRRQRIALQRLHAPSLPGNGTLVQQLRKALPFQLTGAQQRVFEQIAHDLAQPSP 300 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 MLR++QGDVGSGKT+VA +A AVE G Q + AP +LA+QH ++ + + I + Sbjct: 301 MLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLANLRSWLEPLGIRIV 360 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 + G + R A+ +A GQA +++GTHAL Q+++ ++ L L I+DEQHRFGV QRL Sbjct: 361 WLAGKVTGKARAAAMAEVASGQAQVVVGTHALMQEAVVFHDLALAIIDEQHRFGVHQRLA 420 Query: 414 LTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469 L K A PH L+MTATPIPRTL +++ D+D+S I + P GR P++T+++ R Sbjct: 421 LRDKGAAAGSVPHQLVMTATPIPRTLAMSAYADLDVSAIDQLPPGRTPVQTIVLSAERRP 480 Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER--------------FNSLHEHFT 515 E++ER++ +EG++AYW+C IEE +E + V++ F +L Sbjct: 481 ELVERIRAACAEGRQAYWVCTLIEESEEPGKGAQVQQGGPPRIEAQAAEVTFEALSAQLP 540 Query: 516 S-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 +A++HGRM +K+ M FK G LL+ATTVIEVG+DV +AS++IIENAE GLA Sbjct: 541 GVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGLA 600 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG SSC+LLY PLS + RL ++ T DGF+IAE+DL+ R GE+L Sbjct: 601 QLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLQLRGPGELL 660 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 G +Q+G+ F IA LL + A+ +L + PD+ Sbjct: 661 GTRQTGLASFRIADLARDAGLLPRVQVLAERLLAEAPDIA 700 >gi|113869065|ref|YP_727554.1| ATP-dependent DNA helicase RecG [Ralstonia eutropha H16] gi|113527841|emb|CAJ94186.1| ATP-dependent DNA helicase [Ralstonia eutropha H16] Length = 729 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 242/660 (36%), Positives = 363/660 (55%), Gaps = 29/660 (4%) Query: 40 RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRRPYKILLND 96 R +DL+ + P + D I+E + + + + + RR + + D Sbjct: 53 RPVDLVLHLPMRYEDETTLAPIAEAIHRAGLGLPAQVEGEVISNEVTFRPRRQLVVKIAD 112 Query: 97 GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI 156 +GE+TL F K EG ++ V G+++ MVHP + + Sbjct: 113 DSGELTLRFLNFYGNQTKQ-MAEGVRLRVRGEVRGGFFGAEMVHPTVRPVVPGEALPDRL 171 Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213 VY G+ +K I LSR P+ LP + L + +A+ ++H P Sbjct: 172 TPVYPSTAGIPQAYLRKAIGGTLSRTPMPETLPRAVLDGPLARLHLRPLADCLRLLHAPS 231 Query: 214 ----KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI--NVEGKIAQKILR 267 +A + + PA +R+ +DELLA QI+L ++E P EG + + L Sbjct: 232 PQESEAALADRSHPAWQRIKFDELLAQQISLRRAHAA-RREKTAPTMPRREGGLLTRFLA 290 Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 +PF T +Q+ +++I DM++ + M R+LQGDVGSGKT+VA +A A++AG QA +M Sbjct: 291 ALPFRLTGAQQRVVEEIAADMTRPHPMHRLLQGDVGSGKTIVAALAACQAIDAGYQAALM 350 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 AP ILA+QHY + + + + V + G+ +R+A R+ GQA ++IGTHAL Q Sbjct: 351 APTEILAEQHYRKLSAWLEPLGVPVAWLAGSQKARDKREAAARVESGQAQLVIGTHALIQ 410 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKA--------------TAPHVLLMTATPIPR 433 D++++ KL L +VDEQHRFGV QRL L KA T PH L+M+ATPIPR Sbjct: 411 DTVRFAKLGLSVVDEQHRFGVAQRLALRGKAGAADTPDSAATAAETVPHQLMMSATPIPR 470 Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493 TL +T D+D+S I E P GR PI T ++ R DEVI R+ +EG++ YW+CP IE Sbjct: 471 TLAMTYYADLDVSVIDELPPGRTPIVTRLVNDERRDEVIGRIHHAAAEGRQVYWVCPLIE 530 Query: 494 EKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552 E + ++ VE + +L + ++HGR+ +K +VMD F ++L+ATTVIE Sbjct: 531 ESEALQLQTAVETYETLVAALPDLRVGLVHGRLPPAEKAAVMDDFSANRMQVLVATTVIE 590 Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612 VG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+L+Y PLS + RL+ ++ Sbjct: 591 VGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAESVCLLMYQAPLSPTARERLATMR 650 Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 T DGF IA DL+ R GE LG +QSG A + L+E A++ A+ +L + P+ Sbjct: 651 ETTDGFEIARRDLEIRGPGEFLGARQSGEAMLRFADLQTDAWLVEYAQEAAELMLARYPE 710 >gi|53720475|ref|YP_109461.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei K96243] gi|52210889|emb|CAH36877.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei K96243] Length = 748 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 249/663 (37%), Positives = 372/663 (56%), Gaps = 31/663 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D + E+ G + S + RR + L D Sbjct: 75 TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-SEIAYRPRRQLLVKLRDDD 133 Query: 99 G-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157 G E+ L F +K + G+++ V G ++ + +VHP + D + PL + Sbjct: 134 GAELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQ 189 Query: 158 A---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHN 211 A VY G+S +K I AL+R P+ LP I + LQ P +A+A ++H+ Sbjct: 190 ALTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHH 249 Query: 212 PRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IA 262 P D + T PA R+ +DELLA Q++L ++ + + + ++ Sbjct: 250 PGVGADEAALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRARDDGAALS 309 Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 ++ +PF+ T +QE + +I D++Q + M R+LQGDVGSGKT+VA +A A A++AG Sbjct: 310 ARLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGY 369 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 QA +MAP ILA+QH ++ + + + V + G++ +R ALE A G A ++IGT Sbjct: 370 QAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGT 429 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPR 433 HA+ QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPR Sbjct: 430 HAMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPR 489 Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493 TL +T D+D+S I E P GR PI T ++ R DEVI R++ G++ YW+CP IE Sbjct: 490 TLAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIE 549 Query: 494 EKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552 E + ++ VE + +L + ++HGR++ +K +VMD+F +LL+ATTVIE Sbjct: 550 ESETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIE 609 Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612 VG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+L+Y PLS RL ++ Sbjct: 610 VGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMR 669 Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 T DGF IA DL+ R GE LG +QSG A E L+E AR A ++ P+ Sbjct: 670 ETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPE 729 Query: 673 LTS 675 + + Sbjct: 730 VVA 732 >gi|172035243|ref|YP_001801744.1| ATP-dependent DNA helicase RecG [Cyanothece sp. ATCC 51142] gi|171696697|gb|ACB49678.1| ATP-dependent DNA helicase [Cyanothece sp. ATCC 51142] Length = 819 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 236/654 (36%), Positives = 381/654 (58%), Gaps = 25/654 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99 D+LFY+P ID + IS + VTI G + + + F K + ++++L D TG Sbjct: 150 DILFYYPRDHIDYARQVAISNLVAGETVTIVGTVKRCNCFTSPKNKKLSIFELILRDHTG 209 Query: 100 EITLLFFYRKT--------EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS--- 148 I L F+ T E K ++ G + +G +K+ + I + +P +S Sbjct: 210 HIKLNRFFAGTRFTSRGWQERQKRIYPLGSIVAASGLVKQNRYGITLDNPEIEVLDSVGS 269 Query: 149 --QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206 + + + VY L G+ DL +K I+ +L + + + + + L ++ + +A Sbjct: 270 SIESLKIGRVLPVYPLTEGVGADLIRKAIIASLEAIKQIRDPLPRVLREQYGLMGLKDAI 329 Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI--GIPINVEGKIAQK 264 IH P E + AR RL +DE Q+ L R+Q +K++ +GK+ ++ Sbjct: 330 GNIHFPETP---ELLAHARRRLVFDEFFYLQLGFL-QRRQEQKQVHNSAVFTPQGKLIKQ 385 Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324 +PF T +Q+ I +IL+D++ M R++QGDVG+GKT+VA+ A+ AA+++G QA Sbjct: 386 FDDILPFKLTNAQQRVINEILEDLNSVTPMNRLVQGDVGAGKTIVAVFAILAALQSGYQA 445 Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384 +MAP +LA+QHY + + VE++TG+ +A R + ++ G+ +++GTHA Sbjct: 446 ALMAPTEVLAEQHYRKFIPWFNQLYLPVELLTGSTKKAKREEIHRQLQTGELPLLVGTHA 505 Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444 L QD + + KL LV++DEQHRFGVQQR KL K +PHVL MTATPIPRTL LT GD+D Sbjct: 506 LIQDPVNFQKLGLVVIDEQHRFGVQQRAKLLAKGKSPHVLTMTATPIPRTLALTLHGDLD 565 Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504 +S+I E P GR+ I+T ++ + + ++ +++G++ Y I P IEE ++ + ++ V Sbjct: 566 VSQIDELPPGRQAIQTTVLTGKERTQAYDLIRREVAQGRQVYIIFPMIEESEKLDVKAAV 625 Query: 505 ERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 E L E I ++HGRMS K+ V+ +F++ +++++TTVIEVG+DV +A+I Sbjct: 626 EEHKKLSEKVFPDFKIGLLHGRMSSTAKDEVLTAFRDNEYQIIVSTTVIEVGVDVPNATI 685 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622 ++IENAE FGL+QLHQLRGRVGRG S C+L+ + + RL+VL+ ++DGF I+E Sbjct: 686 MLIENAERFGLSQLHQLRGRVGRGSHKSYCLLMSSSK-TPDVRQRLTVLEQSQDGFFISE 744 Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676 DL+ R G +LG +QSG+P F +A +LE+AR A+ I+ D L S+ Sbjct: 745 MDLRFRGPGTVLGTRQSGLPDFALASLVEDQEVLELARLAAEKIIVADQTLGSL 798 >gi|326389531|ref|ZP_08211098.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter ethanolicus JW 200] gi|325994536|gb|EGD52961.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter ethanolicus JW 200] Length = 681 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 259/676 (38%), Positives = 392/676 (57%), Gaps = 26/676 (3%) Query: 8 PLFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 PL + +GVG K + L K+ IN DLLFY P + +R KI ++ Sbjct: 2 PLNLDIQYVKGVGPKRAKLLKKLGINTVE-------DLLFYFPKDYENRSDILKIEDLKV 54 Query: 67 ERIVTITGYISQH-SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 T GYI+ + K K+ + DGTG + L+++ +KN F G + + Sbjct: 55 GEKQTFRGYIAGSPREIKTSKVIITKVPVKDGTGAVELVWY--NQPYIKNNFKIGEEYII 112 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRL 182 GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ AL + Sbjct: 113 NGKLQFKYGQLIVENP--VLEKSEDFKLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYV 170 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 + E+ +++ L +K I A I+ P+ + A+ R Y EL Q+AL L Sbjct: 171 QEVEEFFDEEFLSEKGLMDIKNALININFPQNEA---YLEQAKYRFKYQELFLLQMALFL 227 Query: 243 MRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 M++ K + GI VE K L +PF T +Q +K+I+ DM+ M R++QGD Sbjct: 228 MKRSVKGKKGIKFERVELK---PFLMGLPFKLTSAQIKVLKEIIADMNSHKVMNRLVQGD 284 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + +++G++ Sbjct: 285 VGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYHTLKELFRNTDIKIGLLSGSISP 344 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 +++++ LE+I +G I++GTHAL +D++ + L L I DEQHRFGV+QR LTQK P Sbjct: 345 SNKKEVLEKIKNGDYDIVVGTHALIEDNVIFNNLGLCITDEQHRFGVRQRALLTQKGENP 404 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E + + Sbjct: 405 DVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKK 464 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKN 539 G++ Y +CP IEE + N S + ++E + + ++HG+M+D DKE VM+ F N Sbjct: 465 GRQVYVVCPLIEESDKINAMSAEIVYREIYEDAFKEAKVGLLHGKMTDSDKEKVMEEFVN 524 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G +L++TTVIEVG++V +A+++I+ENAE FGLAQLHQLRGRVGR E S CIL+ + Sbjct: 525 GKIDILVSTTVIEVGVNVPNATVMIVENAERFGLAQLHQLRGRVGRSEFQSYCILISYSN 584 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 S + RL VL T DGF IAE+DL+ R GE LG++Q G+P+F IA +L+ Sbjct: 585 -SDIAKKRLGVLAQTSDGFKIAEKDLEIRGPGEFLGLRQHGLPEFKIANIFEDIDILKTV 643 Query: 660 RKDAKHILTQDPDLTS 675 +KD + +L +DP L + Sbjct: 644 QKDVEELLEKDPKLEN 659 >gi|290967865|ref|ZP_06559416.1| ATP-dependent DNA helicase RecG [Megasphaera genomosp. type_1 str. 28L] gi|290782105|gb|EFD94682.1| ATP-dependent DNA helicase RecG [Megasphaera genomosp. type_1 str. 28L] Length = 678 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 244/646 (37%), Positives = 364/646 (56%), Gaps = 20/646 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERI--VTITGYISQHSSFQLQKRRPYKIL---LNDG 97 DLL Y P ++ DR Y ++ IS R V I GY+ + ++ RR IL + D Sbjct: 29 DLLQYFPRTYEDRRYISPMATISLPRTEPVLICGYVQRIQ--EVHPRRGLSILKVGIADD 86 Query: 98 TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157 +GE L++F + + K +F +++TV GK++ + M +P V +E Sbjct: 87 SGEAELIWFNQPFK--KKLFTVHQQLTVFGKMEAAYGKRQMNNPDI---EEGCVTGTALE 141 Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA--EAFNIIHNPRKA 215 VY L GL + I +AL+ + E D +P+++ EA+ IH P Sbjct: 142 PVYGLTEGLRQKELRNFIRDALNYMEEHSGLTEADTEVPFLYPTMSLYEAYRTIHFP--- 198 Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275 E AR +LA+ EL Q+ L L R+ KK+ GI G + Q +++N+PF T+ Sbjct: 199 DSLEAREKARRQLAFQELFDLQLGLALRRRGEKKKAGIKCAPNGGLLQAVVKNLPFLLTQ 258 Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 Q +A DI DM + M R++QGDVGSGKT VA +A+A VE G Q +MAP ILA Sbjct: 259 GQTNAFLDIQSDMESEVPMQRLVQGDVGSGKTAVAALALAKIVENGYQGALMAPTEILAT 318 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 QH E + + Q I ++TG + R++ L+ IA G ++IGTHAL Q+ +Q+ L Sbjct: 319 QHAEELARLFQGIPIKTALLTGRIGAKERQRVLQEIADGSIQVVIGTHALLQEDVQFAHL 378 Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 LV+ DEQHRFGV+QR L +K APH L MTATPIPRTL L+ GD+D+S I E P GR Sbjct: 379 GLVVTDEQHRFGVKQRAALQEKGRAPHGLFMTATPIPRTLALSVYGDLDVSSIRELPPGR 438 Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 KP+KT + + +K ++ G++ Y +CP +EE + ++ + L E Sbjct: 439 KPVKTYAVKETMRARIYAFMKKLICAGQQCYVVCPLVEESAALDLQAATGLYEMLKEKVF 498 Query: 516 SS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 ++HGRM +KE+VM +F+ +L+AT+VIEVG++V +A++++I+ AE FGL Sbjct: 499 KEFHCGLVHGRMKGKEKETVMKAFQEKRIDILVATSVIEVGVNVPNATLMLIDGAERFGL 558 Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633 AQLHQLRGRVGRG+ + CILL H ++ + RL +++ +DGF++AE+DL R G++ Sbjct: 559 AQLHQLRGRVGRGDLQAYCILLAHGG-TEETRQRLHWMESVQDGFVLAEKDLLLRGSGKL 617 Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679 G Q G+P F A LL AR+ A+ + +PD T VR + Sbjct: 618 FGYMQHGLPDFKAADILKDVQLLSQAREAAQTYMAVEPDETRVRAR 663 >gi|294793852|ref|ZP_06758989.1| ATP-dependent DNA helicase RecG [Veillonella sp. 3_1_44] gi|294455422|gb|EFG23794.1| ATP-dependent DNA helicase RecG [Veillonella sp. 3_1_44] Length = 680 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 244/669 (36%), Positives = 381/669 (56%), Gaps = 33/669 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L+T +G+G L K+ G N T LL Y P ++ DR I ++ + Sbjct: 5 LTTIKGIGPGREKQLHKL---GITNVT---SLLTYFPRTYEDRRTIYSIGDLKSGMTGGV 58 Query: 73 TGYISQHSSFQLQKRRP------YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 G + +Q++RP ++++ DGTG + ++ F + + KN + +G++I Sbjct: 59 VGTV-----IAVQEKRPRPRLSILEVVIADGTGPLKIVLFNQGYK--KNFYKKGQRIYAY 111 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184 GK + + M P N D P I +Y+L G+S + + + + Sbjct: 112 GKAEFQYGYMQMNTPQ--MENLGDGGEPDRGIVPIYALADGVSQFVVRSTVRNWFAANHE 169 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LPE + ++ + + S +AF ++H P ++ +E AR +LAY+EL Q L L+R Sbjct: 170 LPEILPVEVREDHHYMSRYDAFKMMHFPDSSELYE---KARYQLAYEELFVMQAGLALLR 226 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 + + G + G++ + + N+PFS T Q+ A++DI DM + M R+LQGDVGS Sbjct: 227 NKEQCHRGSKMGPNGELMAQCIENLPFSLTGDQQRALEDIRIDMEDERPMQRLLQGDVGS 286 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKT+VA +++ A+E G Q +MAP ILA QHYE I+ N I +E++TG+ + + Sbjct: 287 GKTIVATLSLLKAIENGYQGALMAPTEILAAQHYEGIRTVCANLGITIELLTGSSTKKEK 346 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424 E +A G+ +IIGTHAL Q+ + ++ L LVI+DEQHRFGV QR +L QK T PHVL Sbjct: 347 ECIYEGLADGRIQMIIGTHALIQEGVNFHNLGLVIIDEQHRFGVDQRARLQQKGTYPHVL 406 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 +MTATPIPRT+ L+ GD+ +S I E P GRKP+KT + + + + ++EG++ Sbjct: 407 IMTATPIPRTMTLSVYGDLAVSLIKEMPPGRKPVKTYAVDSSYKERLRTFFGKEMAEGRQ 466 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542 Y +CP +EE ++ + ++ E + L E+F + + ++HGRM +K+ VM++F G Sbjct: 467 VYVVCPLVEESEKLDLQAAEELYLELKEYFYKAYEVGLVHGRMKPSEKDEVMNAFHRGEI 526 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 LL++TTVIEVG++V +A+I+ +E AE FGL+QLHQLRGRVGRG S CIL+ SK Sbjct: 527 LLLVSTTVIEVGVNVPNATIMCVEGAERFGLSQLHQLRGRVGRGAHQSYCILVSD---SK 583 Query: 603 N--SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 N S RL +++ +DGF +AE+DL R G++ G+ QSG+P +A +L AR Sbjct: 584 NDVSQERLKLMEQIQDGFELAEQDLLIRGSGQLFGLAQSGLPDLRVANIIKDIEILVKAR 643 Query: 661 KDAKHILTQ 669 KD Q Sbjct: 644 KDVLDFANQ 652 >gi|134280484|ref|ZP_01767195.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 305] gi|134248491|gb|EBA48574.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 305] Length = 902 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 249/663 (37%), Positives = 372/663 (56%), Gaps = 31/663 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D + E+ G + S + RR + L D Sbjct: 229 TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-SEIAYRPRRQLLVKLRDDD 287 Query: 99 G-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157 G E+ L F +K + G+++ V G ++ + +VHP + D + PL + Sbjct: 288 GAELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQ 343 Query: 158 A---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHN 211 A VY G+S +K I AL+R P+ LP I + LQ P +A+A ++H+ Sbjct: 344 ALTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHH 403 Query: 212 PRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IA 262 P D + T PA R+ +DELLA Q++L ++ + + + ++ Sbjct: 404 PGVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRARDDGAALS 463 Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 ++ +PF+ T +QE + +I D++Q + M R+LQGDVGSGKT+VA +A A A++AG Sbjct: 464 ARLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGY 523 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 QA +MAP ILA+QH ++ + + + V + G++ +R ALE A G A ++IGT Sbjct: 524 QAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGT 583 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPR 433 HA+ QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPR Sbjct: 584 HAMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPR 643 Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493 TL +T D+D+S I E P GR PI T ++ R DEVI R++ G++ YW+CP IE Sbjct: 644 TLAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIE 703 Query: 494 EKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552 E + ++ VE + +L + ++HGR++ +K +VMD+F +LL+ATTVIE Sbjct: 704 ESETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIE 763 Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612 VG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+L+Y PLS RL ++ Sbjct: 764 VGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMR 823 Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 T DGF IA DL+ R GE LG +QSG A E L+E AR A ++ P+ Sbjct: 824 ETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPE 883 Query: 673 LTS 675 + + Sbjct: 884 VVA 886 >gi|254260325|ref|ZP_04951379.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 1710a] gi|254219014|gb|EET08398.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 1710a] Length = 902 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 246/662 (37%), Positives = 371/662 (56%), Gaps = 29/662 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D + E+ G + + +R+ L +D Sbjct: 229 TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 288 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 E+ L F +K + G+++ V G ++ + +VHP + D + PL +A Sbjct: 289 AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQA 344 Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 VY G+S +K I AL+R P+ LP I + LQ P +A+A ++H+P Sbjct: 345 LTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHHP 404 Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IAQ 263 D + T PA R+ +DELLA Q++L ++ + + + ++ Sbjct: 405 GVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRARDDGAALSA 464 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 ++ +PF+ T +QE + +I D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q Sbjct: 465 RLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQ 524 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 A +MAP ILA+QH ++ + + + V + G++ +R ALE A G A ++IGTH Sbjct: 525 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTH 584 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRT 434 A+ QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRT Sbjct: 585 AMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRT 644 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L +T D+D+S I E P GR PI T ++ R DEVI R++ G++ YW+CP IEE Sbjct: 645 LAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEE 704 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ VE + +L + ++HGR++ +K +VMD+F +LL+ATTVIEV Sbjct: 705 SETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEV 764 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+L+Y PLS RL ++ Sbjct: 765 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRE 824 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 T DGF IA DL+ R GE LG +QSG A E L+E AR A ++ P++ Sbjct: 825 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEV 884 Query: 674 TS 675 + Sbjct: 885 VA 886 >gi|237813724|ref|YP_002898175.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei MSHR346] gi|237505267|gb|ACQ97585.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei MSHR346] Length = 906 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 246/662 (37%), Positives = 371/662 (56%), Gaps = 29/662 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D + E+ G + + +R+ L +D Sbjct: 233 TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 292 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 E+ L F +K + G+++ V G ++ + +VHP + D + PL +A Sbjct: 293 AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQA 348 Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 VY G+S +K I AL+R P+ LP I + LQ P +A+A ++H+P Sbjct: 349 LTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHHP 408 Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IAQ 263 D + T PA R+ +DELLA Q++L ++ + + + ++ Sbjct: 409 GVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRARDDGAALSA 468 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 ++ +PF+ T +QE + +I D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q Sbjct: 469 RLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQ 528 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 A +MAP ILA+QH ++ + + + V + G++ +R ALE A G A ++IGTH Sbjct: 529 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTH 588 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRT 434 A+ QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRT Sbjct: 589 AMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRT 648 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L +T D+D+S I E P GR PI T ++ R DEVI R++ G++ YW+CP IEE Sbjct: 649 LAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEE 708 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ VE + +L + ++HGR++ +K +VMD+F +LL+ATTVIEV Sbjct: 709 SETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEV 768 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+L+Y PLS RL ++ Sbjct: 769 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRE 828 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 T DGF IA DL+ R GE LG +QSG A E L+E AR A ++ P++ Sbjct: 829 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEV 888 Query: 674 TS 675 + Sbjct: 889 VA 890 >gi|126452909|ref|YP_001067596.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 1106a] gi|242314593|ref|ZP_04813609.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 1106b] gi|126226551|gb|ABN90091.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 1106a] gi|242137832|gb|EES24234.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 1106b] Length = 902 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 246/662 (37%), Positives = 371/662 (56%), Gaps = 29/662 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D + E+ G + + +R+ L +D Sbjct: 229 TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 288 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 E+ L F +K + G+++ V G ++ + +VHP + D + PL +A Sbjct: 289 AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQA 344 Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 VY G+S +K I AL+R P+ LP I + LQ P +A+A ++H+P Sbjct: 345 LTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHHP 404 Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IAQ 263 D + T PA R+ +DELLA Q++L ++ + + + ++ Sbjct: 405 GVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRARDDGAALSA 464 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 ++ +PF+ T +QE + +I D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q Sbjct: 465 RLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQ 524 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 A +MAP ILA+QH ++ + + + V + G++ +R ALE A G A ++IGTH Sbjct: 525 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTH 584 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRT 434 A+ QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRT Sbjct: 585 AMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRT 644 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L +T D+D+S I E P GR PI T ++ R DEVI R++ G++ YW+CP IEE Sbjct: 645 LAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEE 704 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ VE + +L + ++HGR++ +K +VMD+F +LL+ATTVIEV Sbjct: 705 SETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEV 764 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+L+Y PLS RL ++ Sbjct: 765 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRE 824 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 T DGF IA DL+ R GE LG +QSG A E L+E AR A ++ P++ Sbjct: 825 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEV 884 Query: 674 TS 675 + Sbjct: 885 VA 886 >gi|251797726|ref|YP_003012457.1| ATP-dependent DNA helicase RecG [Paenibacillus sp. JDR-2] gi|247545352|gb|ACT02371.1| ATP-dependent DNA helicase RecG [Paenibacillus sp. JDR-2] Length = 684 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 233/646 (36%), Positives = 369/646 (57%), Gaps = 8/646 (1%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLL Y P + D R +++EI + VT+ G I + Q + ++ + Sbjct: 32 DLLDYFPFRYEDYRIR-ELAEIKDGEKVTVQGTIRGNGILQRYGKNKSRLTCKIEVDHML 90 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162 + + L+ GR+I +TGK ++ + ++ + + ++ V ++ VYS+ Sbjct: 91 VTAVWFNRHFLQGQLTPGREIMLTGKWEQQRLQMTVSESEFADKSTGMVKSGTLQPVYSV 150 Query: 163 PTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221 G++ +K I +AL + ++ E + +L+++ + +A IH+P + K+ Sbjct: 151 GGGITQAWMRKTIKQALLQYGSMIEEVLPHELVERHGLMARRDAVQRIHDPEEVKE---G 207 Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESA 280 AR R+ Y+EL Q+ L R +K GI V G+ + +PF T Q+ Sbjct: 208 LEARRRMVYEELFLFQLKLQAYRSLTRKRGDGIVHQVNGETIRNFAATLPFELTDGQKKV 267 Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340 + +I+ DM Q M R+LQGDVGSGKT+VA IA+ ++AG Q +M P ILA+QH Sbjct: 268 VNEIMSDMRQPAAMNRLLQGDVGSGKTVVAAIALYCTIKAGHQGALMVPTEILAEQHLRS 327 Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400 ++K +T I V ++TG++ + RR L + G I++GTHAL QD + + L LV+ Sbjct: 328 LQKLFADTGIEVALLTGSLTEKKRRDVLAGLQMGMIDILVGTHALIQDDVFFRSLGLVVT 387 Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460 DEQHRFGV QR L +K P VL MTATPIPRTL +T+ GD+D+S I E+P GRKPIKT Sbjct: 388 DEQHRFGVNQRSILRRKGMNPDVLTMTATPIPRTLAITAFGDMDVSTIKERPHGRKPIKT 447 Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIA 519 + + ++ V+ ++ + EG++AY ICP IEE + + ++ ++ + + + F + Sbjct: 448 YWVKHDMMERVLGFIRREVGEGRQAYVICPLIEESDKLDVQNAIDLYVQMQQAFPDLKVG 507 Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579 ++HGR+S +K+ VM F +LL+ATTV+EVG+DV +A++III +AE FGL+QLHQL Sbjct: 508 LLHGRLSASEKDEVMRGFGANETQLLVATTVVEVGVDVPNATLIIIMDAERFGLSQLHQL 567 Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639 RGRVGRG S C+L+ P S+N R+ V+ T DGF ++ DL+ R G+ G KQS Sbjct: 568 RGRVGRGAHQSFCVLVADPK-SENGRERMKVMTETNDGFEVSRRDLELRGPGDFFGTKQS 626 Query: 640 GMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685 G+P+F IA +LE+AR DA + +D T+ + +R+ L Sbjct: 627 GLPEFKIADMAAEYEMLELARDDAAELTGRDDFWTNPLFERMRVQL 672 >gi|113954884|ref|YP_730486.1| ATP-dependent DNA helicase RecG [Synechococcus sp. CC9311] gi|113882235|gb|ABI47193.1| ATP-dependent DNA helicase RecG [Synechococcus sp. CC9311] Length = 857 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 246/705 (34%), Positives = 388/705 (55%), Gaps = 47/705 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L +PL+ G+G K + L+ + DL+ ++P ++D +I + Sbjct: 158 LESPLARVHGIGPKLAERLASL------GLLVVRDLIQHYPRDYVDYSALRRIEALEAGE 211 Query: 69 IVTITGYISQHSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK-- 122 TI + + F R P ++ L D TG I + F + G+ Sbjct: 212 TATIVATVRRSHGFT-SPRNPNLSIIELQLQDPTGRIKVTRFLAGKRFSNPSYLHGQTRQ 270 Query: 123 ------ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-------IEAVYSLPTGLSVD 169 + V+G +K + P + + N PL + VY L GL+ D Sbjct: 271 YPVGATVAVSGLVKSGPYGVSFQDP--LIEVMESANAPLRSRQIGRLLPVYPLTEGLTAD 328 Query: 170 LFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA 229 F+ ++ L + PE + + + + +A IH P ++ + AR RL Sbjct: 329 RFRSLVEAVLPAVRFWPEPLPASRREARGLMARDQALVAIHRPETSEQLQQ---ARHRLV 385 Query: 230 YDELLAGQIALLLMRKQFKKEI-----GIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284 +DE L Q++L+ R ++ G+ + EG + + L +PF T +Q+ +I Sbjct: 386 FDEFLLLQLSLMQRRAALRQRSAPVLHGV-VEREGLVG-RFLSLLPFELTGAQKRVFSEI 443 Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344 QD+ + M R++QGDVGSGKT+VA+ A+ AVEAG Q +MAP +LA QHY + + Sbjct: 444 EQDLERPEPMARLVQGDVGSGKTVVAIAALLRAVEAGWQGALMAPTEVLAAQHYRSLCCW 503 Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404 + VE++TG+ P+ RR+ L ++ G I++GTHAL +D + + +L LV+VDEQH Sbjct: 504 LPPLHVSVELLTGSTPRRSRRQILSDLSGGTLRILVGTHALLEDPVAFDRLGLVVVDEQH 563 Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464 RFGV+QR +L K PH+L MTATPIPRTL L+ GD+D+S+I E P GR PI+T ++ Sbjct: 564 RFGVRQRNRLLDKGLQPHLLTMTATPIPRTLALSLHGDLDVSQIDELPPGRTPIRTRVVK 623 Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIH 522 + +E E ++ +S+G++ Y + P +EE ++ + RS V+ L E S+ ++H Sbjct: 624 SSEREEAYELIREQVSQGQRTYVVLPLVEESEKVDLRSAVDVHRQLSEEVFPEFSVGLLH 683 Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582 GR++ +K++V+ F GT ++L++TTV+EVG+DV +AS+++I++A+ FGLAQLHQLRGR Sbjct: 684 GRLASAEKQAVIADFAAGTTQILVSTTVVEVGVDVPEASVMVIDHADRFGLAQLHQLRGR 743 Query: 583 VGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 VGRG S C+L+ PL++ RL VL + DGF IAE DL+ R G++LG +QSG Sbjct: 744 VGRGAAASYCLLVNDSRNPLARQ---RLEVLVRSNDGFEIAEMDLRFRGPGQVLGTRQSG 800 Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685 +P +A S+LE AR +A IL +DPDL S + IR+LL Sbjct: 801 LPDLALASLADDGSVLEEARDEAASILKEDPDLKSF--EHIRVLL 843 >gi|318041336|ref|ZP_07973292.1| ATP-dependent DNA helicase RecG [Synechococcus sp. CB0101] Length = 805 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 239/688 (34%), Positives = 381/688 (55%), Gaps = 39/688 (5%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS +GVG K + L+ + + A DL+ Y+P ++D +I+ + R T Sbjct: 111 PLSEIKGVGPKSATRLAAL-DLWVAR-----DLVRYYPRDYLDYSNLVRIAALEPGRTAT 164 Query: 72 ITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFE--------G 120 I + + SF + IL L D TG I + F+ + + G Sbjct: 165 IVATVRRSHSFTSPRNPNLSILELQLADITGRIRISKFFAGKRFSSPAWLKAQQRQYPTG 224 Query: 121 RKITVTGKIKK------LKNRI--IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFK 172 + V+G +K+ ++ + ++ PH + Q + VY L GLS D + Sbjct: 225 ATVAVSGLVKETPYGPAFQDPLMEVLASPHAPVQSEQ---IGRLLPVYGLTEGLSADRLR 281 Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232 ++ L+ P+ + + Q++ ++ A IH P D + AR RL +DE Sbjct: 282 ALVRPLLAAAQGWPDPLPASIQQQEQLVNLGTALTQIHAP---SDQASLAKARRRLVFDE 338 Query: 233 LLAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 L Q+ LL R+Q +N G + L +PF T +Q+ + +I D+ ++ Sbjct: 339 FLYLQLGLLQRRRQLTSRPAPALNNPSGTLLPAFLELLPFPLTGAQQRVLAEIRADLERQ 398 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351 M R++QGDVGSGKT+VA+ A+ A+EAG Q +MAP +LA+QHY + ++ + Sbjct: 399 EPMARLVQGDVGSGKTVVAIAALLTAIEAGCQGALMAPTEVLAEQHYRKLCEWLPQLHVS 458 Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411 ++TG+ P RR+ L +A+G +++GTHAL +D +Q+ +L LV+VDEQHRFGV QR Sbjct: 459 CALLTGSTPARRRRELLADLANGTLKMLVGTHALLEDPVQFARLGLVVVDEQHRFGVHQR 518 Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471 +L K PH+L MTATPIPRTL L+ GD+++S+I E P GR PI+T ++ ++ Sbjct: 519 NRLLDKGLQPHLLTMTATPIPRTLALSLHGDLEVSQIDELPPGRTPIRTALLSAAEREQA 578 Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDID 529 + ++ ++ G++AY + P +EE ++ + RS VE L E + ++HGRM+ D Sbjct: 579 YQLIREQVALGQRAYVVLPLVEESEKLDLRSAVEVHQQLSEQIFPDLQVGLLHGRMASAD 638 Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589 K++ + +F G ++L++TTV+EVG+DV +AS+++IE+A+ FGLAQLHQLRGRVGRG Sbjct: 639 KQAAIGAFAAGDTQVLVSTTVVEVGVDVPEASVMVIEHADRFGLAQLHQLRGRVGRGAAA 698 Query: 590 SSCILLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 S C L+ S+N+ RL VL ++ DGF IAE DL+ R G++LG +QSG+P +A Sbjct: 699 SFCQLIND---SRNALARQRLEVLVHSTDGFEIAEMDLRLRGPGQVLGTRQSGLPDLALA 755 Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTS 675 +LE AR A+ I+ +DP L + Sbjct: 756 SLTDDGDVLEQARLVAQQIMERDPGLEA 783 >gi|76810269|ref|YP_334739.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 1710b] gi|76579722|gb|ABA49197.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 1710b] Length = 866 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 246/662 (37%), Positives = 371/662 (56%), Gaps = 29/662 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D + E+ G + + +R+ L +D Sbjct: 193 TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 252 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 E+ L F +K + G+++ V G ++ + +VHP + D + PL +A Sbjct: 253 AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQA 308 Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 VY G+S +K I AL+R P+ LP I + LQ P +A+A ++H+P Sbjct: 309 LTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHHP 368 Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IAQ 263 D + T PA R+ +DELLA Q++L ++ + + + ++ Sbjct: 369 GVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRARDDGAALSA 428 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 ++ +PF+ T +QE + +I D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q Sbjct: 429 RLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQ 488 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 A +MAP ILA+QH ++ + + + V + G++ +R ALE A G A ++IGTH Sbjct: 489 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTH 548 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRT 434 A+ QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRT Sbjct: 549 AMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRT 608 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L +T D+D+S I E P GR PI T ++ R DEVI R++ G++ YW+CP IEE Sbjct: 609 LAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEE 668 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ VE + +L + ++HGR++ +K +VMD+F +LL+ATTVIEV Sbjct: 669 SETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEV 728 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+L+Y PLS RL ++ Sbjct: 729 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRE 788 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 T DGF IA DL+ R GE LG +QSG A E L+E AR A ++ P++ Sbjct: 789 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEV 848 Query: 674 TS 675 + Sbjct: 849 VA 850 >gi|88808500|ref|ZP_01124010.1| ATP-dependent DNA helicase RecG [Synechococcus sp. WH 7805] gi|88787488|gb|EAR18645.1| ATP-dependent DNA helicase RecG [Synechococcus sp. WH 7805] Length = 831 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 244/694 (35%), Positives = 381/694 (54%), Gaps = 41/694 (5%) Query: 8 PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67 PL APLS RG+G K + L+ + DLL ++P ++D +I + Sbjct: 131 PLDAPLSRVRGIGPKQAERLASL------GLLVVRDLLLHYPRDYVDYSALRRIEALVPG 184 Query: 68 RIVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRK-- 122 TI + + F + IL L D TG I + F + G+ Sbjct: 185 ETATIVATVRRCHGFTSPRNPNLSILELQLQDPTGRIKVSRFLAGRRFSNPSYLHGQTRL 244 Query: 123 ------ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-------IEAVYSLPTGLSVD 169 + V+G +K + P + + PL + VYSL GL+ D Sbjct: 245 YPNGATVAVSGLVKDGPYGLSFQDP--LIEVMESAQAPLQSKRIGRLLPVYSLTEGLTAD 302 Query: 170 LFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA 229 F+ ++ AL + + PE + Q + +A IH P ++ + AR RL Sbjct: 303 RFRTLVEAALPSVRLWPEPLPPQRRQARQLLDRHQALTAIHRPETSEQLQQ---ARHRLV 359 Query: 230 YDELLAGQIALLLMRKQFK----KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285 +DE L Q+ L+ R + + I + +G +A + L N+PF T +Q + +I Sbjct: 360 FDEFLLLQLGLMQRRAALRQRAAPSLRIASDRDGLLA-RFLDNLPFQFTGAQTRVLAEID 418 Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345 +D+ + M R++QGDVGSGKT+VA+ A+ A++AG Q +MAP +LA+QHY + ++ Sbjct: 419 EDLERSEPMARLVQGDVGSGKTVVAVAALLKAIQAGWQGAMMAPTEVLAEQHYRSLCQWL 478 Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405 + VE++TG+ P RR+ L +A G +++GTHAL +D + + +L LV+VDEQHR Sbjct: 479 PPLHVTVELLTGSTPLKKRRQLLADVASGGCKVLVGTHALLEDPVAFERLGLVVVDEQHR 538 Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465 FGV+QR +L K PH+L MTATPIPRTL L+ GD+D+S+I E P GR PI T ++ Sbjct: 539 FGVRQRNRLLGKGLQPHLLTMTATPIPRTLALSLHGDLDVSQIDELPPGRTPILTTMLAG 598 Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL-HEHFTS-SIAIIHG 523 + D+ ++ + +G++AY + P +EE ++ + RS V+ L E F + ++HG Sbjct: 599 SERDQAYSVIREEVEKGQRAYVVLPLVEESEKMDLRSAVDVHRQLEEEEFPDLKVGLLHG 658 Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583 R+ +K++V+ +F G ++L++TTV+EVG+DV +AS+++I++A+ FGLAQLHQLRGRV Sbjct: 659 RLPSAEKQAVIQAFARGETQVLVSTTVVEVGVDVPEASVMMIDHADRFGLAQLHQLRGRV 718 Query: 584 GRGEEISSCILLYHP--PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641 GRG S C+L+ PL++ RL VL + DGF IAE DL+ R G++LG +QSG+ Sbjct: 719 GRGAAASRCLLINDSRNPLARQ---RLEVLVRSTDGFEIAEMDLRLRGPGQVLGTRQSGL 775 Query: 642 PKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 P +A S+LE AR +A IL DPDL + Sbjct: 776 PDLALASLADDGSVLEEARDEAADILRNDPDLNN 809 >gi|171319784|ref|ZP_02908870.1| ATP-dependent DNA helicase RecG [Burkholderia ambifaria MEX-5] gi|171094986|gb|EDT40012.1| ATP-dependent DNA helicase RecG [Burkholderia ambifaria MEX-5] Length = 686 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 241/660 (36%), Positives = 365/660 (55%), Gaps = 25/660 (3%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D I E+ I G + + + RR + + D Sbjct: 13 TRSIDLVLHLPMRYEDETTLTPIGELLPGGIAQTEGVVFDNE-VAYRPRRQLVVKIQDDD 71 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIE 157 GE +L F G+++ V G ++ + MVHP + D P ++ Sbjct: 72 GEQLVLRFLNFYGSQVKQMAVGQRLRVRGDVRGGFFGMEMVHPAVRVVEA-DAPLPQVLT 130 Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 VY G+S +K I A+ R P+ LP IE+D L+ P++A+A I+H+P Sbjct: 131 PVYPSTAGVSQAYLRKAIENAVERTPLPELLPPEIERDYLKPLGVPTLAQAVRILHHPAV 190 Query: 215 AKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-----EGKIAQKI 265 D + + PA R+ ++ELLA Q++L ++ + + + ++ Sbjct: 191 DSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAAPAMPRRAATDANALTTRL 250 Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 +PF+ T +Q + +I D++ + M R+LQGDVGSGKT+VA +A A++AG QA Sbjct: 251 YAALPFTLTGAQARVVDEIAHDLTLAHPMQRLLQGDVGSGKTVVAALAATQAIDAGYQAA 310 Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +MAP ILA+QH ++ + + + V + G++ +R A+E A G A ++IGTHA+ Sbjct: 311 LMAPTEILAEQHARKLRAWLEPLGVSVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTHAI 370 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLV 436 QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRTL Sbjct: 371 IQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAANGARDFQPHQLMMSATPIPRTLA 430 Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496 +T D+++S I E P GR P+ T ++ R +EVI R++ G++ YW+CP IEE + Sbjct: 431 MTYYADLEVSTIDELPPGRTPVLTRLVGDARREEVIARVREAALTGRQVYWVCPLIEESE 490 Query: 497 ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555 ++ VE + +L + ++HGR+S DK +VM++F +LL+ATTVIEVG+ Sbjct: 491 TLQLQTAVETYETLATALPELKVGLVHGRLSPADKAAVMEAFTRNEVQLLVATTVIEVGV 550 Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615 DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+LLY PLS RL ++ T Sbjct: 551 DVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYTGPLSLTGRERLKTMRETT 610 Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 DGF IA DL+ R GE LG +QSG A E L++ AR A ++ PD+ + Sbjct: 611 DGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLIDPARDAAARLIAAYPDVVT 670 >gi|295815286|ref|YP_001250813.3| ATP dependent DNA helicase RecG [Legionella pneumophila str. Corby] gi|148281379|gb|ABQ55467.1| ATP dependent DNA helicase RecG [Legionella pneumophila str. Corby] Length = 616 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 231/592 (39%), Positives = 353/592 (59%), Gaps = 23/592 (3%) Query: 94 LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153 + D TG + L FF+ + ++ I G+++ N++ M+HP Y + Q+ +F Sbjct: 6 VEDKTGIVKLRFFHFNKQQIQ-ALNNSAMIRAFGEVRGFNNQLEMIHPEYQLID-QESDF 63 Query: 154 PLIEA---VYSLPTGLSVDLFKKIIVEALSR----LPVLPEWIEKDLLQKKSFPSIAEAF 206 + E +Y GL+ ++++ AL + L L EW+ + LQ+ +F + EA Sbjct: 64 HVEETLTPIYPSTQGLTQTRLRQLVKIALEQSEHELHQL-EWMSEKQLQENNFYDLGEAI 122 Query: 207 NIIHNPRKAKDFEWTS------PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK 260 ++HNP D ++ PA +RL +DELLA Q+++ R+ K I + Sbjct: 123 KLLHNP--PPDISLSNLEAGEHPALKRLIFDELLAQQLSMQFARQSRSKLQAPAILFDNA 180 Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320 I ++ + ++PFS T +Q+ K+I D++Q MLR+LQGDVG+GKT++A +A A+ Sbjct: 181 IHKRFIESLPFSLTNAQQRVFKEISVDLTQSKPMLRLLQGDVGAGKTIIAALAALQAISQ 240 Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380 G Q MAP +L++QH + K+ + I V ++G M R+ AL + +I+ Sbjct: 241 GFQVAFMAPTDLLSEQHTNSLSKWLEPIGINVLRLSGKMKTTERKNALAALQDNSCQLIV 300 Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLV 436 GTHALFQ+ +++ +L LVI+DEQHRFGV+QRL L QK PH LLMTATPIPRTL Sbjct: 301 GTHALFQEQVEFARLGLVIIDEQHRFGVEQRLLLQQKGQLNQLIPHQLLMTATPIPRTLS 360 Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496 ++ +DIS I E P GR PI T ++ ++ + +IERL+ ++ GK+AYW+C IEE + Sbjct: 361 MSHFAHLDISVIDELPPGRMPITTAVLNQDKRELIIERLQAAIANGKQAYWVCTLIEESE 420 Query: 497 ESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555 + + + L E + + + +HGRM +KE+ M +FK G ++ATTVIEVG+ Sbjct: 421 KLQCIAATDTSKKLQEQLSFARVRQVHGRMKAHEKEATMAAFKQGEIDKVVATTVIEVGV 480 Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615 DV +AS++IIENAE GL+QLHQLRGRVGRG S C+LLY PLS+ RL ++++T Sbjct: 481 DVPNASLMIIENAERLGLSQLHQLRGRVGRGNNQSHCLLLYQSPLSQQGAERLKIMRSTT 540 Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 DGFLI+E+DL+ R GEILG +Q+G +F IA + +L I R AK ++ Sbjct: 541 DGFLISEKDLELRGSGEILGTRQTGFRQFKIANLQRDKTLFAILRPIAKQLM 592 >gi|253995560|ref|YP_003047624.1| ATP-dependent DNA helicase RecG [Methylotenera mobilis JLW8] gi|253982239|gb|ACT47097.1| ATP-dependent DNA helicase RecG [Methylotenera mobilis JLW8] Length = 680 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 233/609 (38%), Positives = 354/609 (58%), Gaps = 16/609 (2%) Query: 52 FIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTE 111 +ID + + ++ + G I H+ + R+ L D +G++TL F + Sbjct: 37 YIDETHVTAVRDLRMGESAQVEGEIV-HAEVSYKPRKALIARLEDASGQLTLRFLHFYPS 95 Query: 112 MLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLF 171 + N G + V G+++ MVHP + + + VY GLS Sbjct: 96 QI-NALKVGNTLRVYGEVRSGFFGYEMVHPTCKAVGEKTIVAETLTPVYPTVAGLSQASL 154 Query: 172 KKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR-----KAKDFEWTSPARE 226 +K I AL + + E + L + PS A + +H+P +A + + T+ R Sbjct: 155 RKAIGIALQQQGEMHETLPAALYADLNLPSFAASLVALHHPHPEVSLRALENKSTAHWR- 213 Query: 227 RLAYDELLAGQIALLLMRKQF--KKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKD 283 RLA+DELLA Q++ MRK + ++ + P ++ +L+++PF+ T +Q+ + Sbjct: 214 RLAFDELLAQQLS---MRKHYARRRSVSAPQFKRSKQLISALLKSLPFALTSAQQKVALE 270 Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343 I D++Q + M R+LQGDVGSGKT+VA +A VE G Q +MAP ILA+QHY + Sbjct: 271 IEHDLTQAHPMQRLLQGDVGSGKTIVACMAALQCVENGWQVALMAPTEILAEQHYRKMLS 330 Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403 + Q I + +TG+ + R AL IA+G+A +++GTHALFQ+++++ L L I+DEQ Sbjct: 331 WLQPLDIKIAWLTGSQSKKDRDTALASIANGEAKLVVGTHALFQEAVRFKSLGLAIIDEQ 390 Query: 404 HRFGVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462 HRFGV QRL L QK PH L+M+ATPIPRTL ++ D+D+S I E P GR PI T I Sbjct: 391 HRFGVHQRLALRQKGQPEPHQLMMSATPIPRTLSMSYYADLDVSVIDELPPGRSPIVTKI 450 Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAII 521 + R +E+++R++ +G +AYW+CP IEE + + + + + E F I ++ Sbjct: 451 VSDARREEILQRVREACLQGNQAYWVCPLIEESEALQLATANDTYALMQEEFPELRIGLV 510 Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581 HGRM +K++VM F G +LL+ATTVIEVG+DV +AS+++IE+AE GL+QLHQLRG Sbjct: 511 HGRMKPSEKQAVMAEFSAGHTQLLVATTVIEVGVDVPNASLMVIEHAERMGLSQLHQLRG 570 Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641 RVGRG S+CILLY LS+ + RL V+ + DGF IA+ DL+ R GE+LG++QSG+ Sbjct: 571 RVGRGAAKSTCILLYQNKLSETARARLKVIYESNDGFAIAQADLQIRGPGELLGVRQSGV 630 Query: 642 PKFLIAQPE 650 P IA E Sbjct: 631 PMLKIADLE 639 >gi|194290671|ref|YP_002006578.1| ATP-dependent DNA helicase recg [Cupriavidus taiwanensis LMG 19424] gi|193224506|emb|CAQ70517.1| ATP-dependent DNA helicase [Cupriavidus taiwanensis LMG 19424] Length = 730 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 241/660 (36%), Positives = 363/660 (55%), Gaps = 30/660 (4%) Query: 40 RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRRPYKILLND 96 R +DL+ + P + D I+E + + + + + RR + L D Sbjct: 55 RPVDLVLHLPMRYEDETTVVPIAEAIHRAGLGLPAQVEGEVVSNEVTFRPRRQLVVKLAD 114 Query: 97 GTGEITLLF--FYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP 154 +GE+TL F FY EG ++ V G+++ MVHP + + Sbjct: 115 DSGELTLRFLNFYGSQ---TRQMAEGVRLRVRGEVRGGFFGAEMVHPTVRPVLAGEALPD 171 Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHN 211 + VY G+ +K I AL+R P+ LP+ + + L + +AE ++H Sbjct: 172 RLTPVYPSTAGIPQAYLRKAIGGALARTPLPETLPQAVLQGPLARLQLRPLAECLRLLHA 231 Query: 212 P----RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI-NVEGKIAQKIL 266 P +A + + PA +R+ +DELLA QI+L + + + EG + + L Sbjct: 232 PPPQESEAALADRSHPAWQRVKFDELLAQQISLRRAHAARRDKTAPTMPRREGGLLTRFL 291 Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 +PF T +Q+ + +I DM+ + M R+LQGDVGSGKT+VA +A A++AG QA + Sbjct: 292 AALPFRLTGAQQRVVGEIAADMTLPHPMHRLLQGDVGSGKTIVAALAACQAIDAGYQAAL 351 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 MAP ILA+QH+ + + + + V + G+ +R A+ R+ G+A ++IGTHAL Sbjct: 352 MAPTEILAEQHFRKLSAWLEPLGVPVAWLAGSQKAREKRHAVARVESGEAQLVIGTHALI 411 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-------------TAPHVLLMTATPIPR 433 QD++++ KL L +VDEQHRFGV QRL L KA T PH L+M+ATPIPR Sbjct: 412 QDTVRFAKLGLSVVDEQHRFGVAQRLALRGKAGVAEAPAAISAAETVPHQLMMSATPIPR 471 Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493 TL +T D+D+S I E P GR PI T ++ R DEVI R+ +EG++ YW+CP IE Sbjct: 472 TLAMTYYADLDVSVIDELPPGRTPIVTRLVNDERRDEVIGRIHHAAAEGRQVYWVCPLIE 531 Query: 494 EKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552 E + ++ VE + +L + ++HGR+ +K +VMD F ++L+ATTVIE Sbjct: 532 ESEALQLQTAVETYETLVAALPDLRVGLVHGRLPPAEKAAVMDDFSANRLQVLVATTVIE 591 Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612 VG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+L+Y PLS + RL+ ++ Sbjct: 592 VGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAESVCLLMYQAPLSPTARERLATMR 651 Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 T DGF IA DL+ R GE LG +QSG A + L+E A+ A+ +L P+ Sbjct: 652 ETTDGFEIARRDLEIRGPGEFLGARQSGEAMLRFADLQTDAWLVEYAQAAAELMLAHYPE 711 >gi|153855287|ref|ZP_01996453.1| hypothetical protein DORLON_02467 [Dorea longicatena DSM 13814] gi|149752286|gb|EDM62217.1| hypothetical protein DORLON_02467 [Dorea longicatena DSM 13814] Length = 677 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 246/668 (36%), Positives = 375/668 (56%), Gaps = 21/668 (3%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 + +G+G+K KI N DL+ Y+P + ISE+ E++I T+ Sbjct: 7 IGDLKGIGEKTKKLFEKI------NVHTVGDLIRYYPHGYDVYEEAVPISELEEDKIQTV 60 Query: 73 TGYISQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI-K 130 TG I R L + D TG + +++F + L+N G IT+ G++ + Sbjct: 61 TGAIYGRVQVSGNSRMQVTTLHVKDLTGTLKVIWF--RMPFLRNTLSGGGVITLRGRVVR 118 Query: 131 KLKNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 K ++M HP + +++ + ++ VY L GLS ++ K + +AL L + E + Sbjct: 119 KKTGDLVMEHPEMFYPSAKYEEKLHTLQPVYGLTAGLSNNMVMKAMKQALDGLDLTREIL 178 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249 L K A IH P +D E ARERL ++E L +++ ++++ ++ Sbjct: 179 PDSLRLKYGLAEYNYAVRGIHFP---EDKEVFYHARERLVFEEFLEFILSIRRLKEKNER 235 Query: 250 -EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 + P+ ++ QK L N+PF T +Q+ K+I +D+ M R++QGDVGSGKT+ Sbjct: 236 LDNNYPMQSRPEV-QKFLENLPFELTGAQQKVWKEIEKDLGSDKTMSRLVQGDVGSGKTI 294 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQAHRRK 366 VA++A+ A G Q +MAP +LA+QHYE I K ++ I VE++TG+M +R+ Sbjct: 295 VAVLALMNAAFNGYQGAMMAPTEVLARQHYENITKMFEDYDIPIKVELLTGSMTAKEKRR 354 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426 A +RI G A IIIGTHAL Q ++ Y L LVI DEQHRFGV+QR K PHVL+M Sbjct: 355 AYDRIECGLAKIIIGTHALIQGAVSYDNLGLVITDEQHRFGVKQRETFALKGGEPHVLVM 414 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486 +ATPIPRTL + GD+DIS I E PA R PIK ++ ++ +K ++EG++ Y Sbjct: 415 SATPIPRTLAIILYGDLDISVIDELPANRLPIKNCVVDTGYRNKAYNFMKKQIAEGRQCY 474 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKL 544 ICP +EE + +V + +L E I A +HG+M K+ +MD F ++ Sbjct: 475 VICPMVEESETMEAENVTDYTVALQEEMGDQIQVACLHGKMKQAQKDDIMDRFGRNEIQI 534 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 L++TTVIEVGIDV +A++++IENAE FGLAQLHQLRGRVGRG+ S CI + SK + Sbjct: 535 LVSTTVIEVGIDVSNATVMMIENAERFGLAQLHQLRGRVGRGKYQSYCIFM-SASKSKET 593 Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 RL +L ++ DGF IA EDL+ R G++ GI+QSG+ F + +L++A + A Sbjct: 594 KERLDILNHSNDGFKIASEDLRLRGPGDLFGIRQSGLMNFKLGDIYQDAKILQMANEAAD 653 Query: 665 HILTQDPD 672 + +D + Sbjct: 654 QLTEEDEE 661 >gi|189425013|ref|YP_001952190.1| ATP-dependent DNA helicase RecG [Geobacter lovleyi SZ] gi|189421272|gb|ACD95670.1| ATP-dependent DNA helicase RecG [Geobacter lovleyi SZ] Length = 765 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 259/696 (37%), Positives = 383/696 (55%), Gaps = 36/696 (5%) Query: 17 RGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRPKISEISEERIVTITG- 74 +GVG K + L+K R + D LF P + DR I ++ G Sbjct: 71 KGVGPKLAELLAK-------RGIRSVEDALFCLPHRYEDRRQLIPIRQLKPGSNHVFQGT 123 Query: 75 YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134 IS S+ R+ ++ ++ D +G I L +F+ +K + GR+ TG++ Sbjct: 124 VISTESTETRGGRKVFEAVVQDESGSIVLKWFHANGVWMKRTWQVGRQGVFTGELSSFGW 183 Query: 135 RIIMVHPHYIF----------HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LP 183 + + HP + + VNF I VY L GL ++++ + + LP Sbjct: 184 KPEVHHPDVEWLEKGTDVNAVMTADPVNFGRIVPVYPLTEGLHQKGMRRVMRQVVDTFLP 243 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIA 239 L + + LL+ + + EA +H P E + A LA+DE ++ Sbjct: 244 NLENILPQSLLETYQYLPLREALGQVHLPPSDAPLIDLNEGRTLAHRSLAFDEFFFWELG 303 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L ++ E GI V + +++++ +PF T +Q + +I DM + M R++Q Sbjct: 304 LALKKRGVALEEGISFRVTHRYTKELVKLLPFQLTAAQRRVLSEIKADMMASHPMHRLVQ 363 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKTLVAL+A AVE Q IMAP ILA+QH+ I + + V ++T M Sbjct: 364 GDVGSGKTLVALMAALVAVENDYQVAIMAPTEILAEQHWHNIHHWCDQLGVNVVLLTSGM 423 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +++AL+++A G+A I+IGTHA+ QD +++++L L IVDEQHRFGV QR L +K Sbjct: 424 RGKVKKEALQQVADGRASIVIGTHAVIQDKVEFHRLGLGIVDEQHRFGVLQRGVLKKKGA 483 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 P +L+MTATPIPRTL +T GD+ +S I E P GR PI T I +R +V E + + Sbjct: 484 NPDILVMTATPIPRTLAMTLFGDLALSVIDELPPGRTPINTKIYFESRRKQVYEMIHQEI 543 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI------AIIHGRMSDIDKESV 533 +G++AY I P +EE ++S+ ++ + + EH + I ++HGRM +KE+V Sbjct: 544 GQGRQAYVIYPLVEESEKSDLKAATQ----MAEHLQADIFPGLRLGLLHGRMKPEEKEAV 599 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M SFK +L+ATTVIEVGIDV +A++++IE+AE FGL+QLHQLRGRVGRG SSCI Sbjct: 600 MASFKKQELDILVATTVIEVGIDVPNATLMVIEHAERFGLSQLHQLRGRVGRGSHRSSCI 659 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 LL LS++ RL V++ T DGF IAE DL+ R G+ LG +QSGMP F +A Sbjct: 660 LLTAGKLSEDGEKRLRVMEATTDGFRIAEADLEIRGPGDFLGTRQSGMPDFRVASILRDG 719 Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQ 689 ++LE AR A +L +D L S GQ RIL L Q Sbjct: 720 AILEQARSAAAKLLERDEQLHSSEGQ--RILQELLQ 753 >gi|282850344|ref|ZP_06259723.1| ATP-dependent DNA helicase RecG [Veillonella parvula ATCC 17745] gi|282579837|gb|EFB85241.1| ATP-dependent DNA helicase RecG [Veillonella parvula ATCC 17745] Length = 680 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 243/669 (36%), Positives = 381/669 (56%), Gaps = 33/669 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L+T +G+G L K+ G N T LL Y P ++ DR I ++ + Sbjct: 5 LTTIKGIGPGREKQLHKL---GITNVT---SLLTYFPRTYEDRRTIYSIGDLKSGMTGGV 58 Query: 73 TGYISQHSSFQLQKRRP------YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 G + +Q++RP ++++ DGTG + ++ F + + KN + +G++I Sbjct: 59 VGTV-----IAVQEKRPRPRLSILEVVIADGTGPLKIVLFNQGYK--KNFYKKGQRIYAY 111 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184 GK + + M P N D P I +Y+L G+S + + + + Sbjct: 112 GKAEFQYGYMQMNTPQ--MENLGDGGEPDRGIVPIYALADGVSQFVVRSTVRNWFAANHE 169 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LPE + ++ + + S +AF ++H P ++ +E AR +L+Y+EL Q L L+R Sbjct: 170 LPEILPVEVREDHHYMSRYDAFKMMHFPDSSELYE---KARYQLSYEELFVMQAGLALLR 226 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 + + G + G++ + + N+PFS T Q+ A++DI DM + M R+LQGDVGS Sbjct: 227 NKEQCHRGPKMGPNGELMAQCIENLPFSLTGDQQRALEDIRIDMEDERPMQRLLQGDVGS 286 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKT+VA +++ A+E G Q +MAP ILA QHYE I+ N I +E++TG+ + + Sbjct: 287 GKTIVATLSLLKAIENGYQGALMAPTEILAAQHYEGIRTVCANLGITIELLTGSSTKKEK 346 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424 E +A G+ +IIGTHAL Q+ + ++ L LVI+DEQHRFGV QR +L QK T PHVL Sbjct: 347 ECIYEGLADGRIQMIIGTHALIQEGVNFHNLGLVIIDEQHRFGVDQRARLQQKGTYPHVL 406 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 +MTATPIPRT+ L+ GD+ +S I E P GRKP+KT + + + + ++EG++ Sbjct: 407 IMTATPIPRTMTLSVYGDLAVSLIKEMPPGRKPVKTYAVDSSYKERLRTFFGKEMAEGRQ 466 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542 Y +CP +EE ++ + ++ E + L E+F + + ++HGRM +K+ VM++F G Sbjct: 467 VYVVCPLVEESEKLDLQAAEELYLELKEYFYKAYEVGLVHGRMKPSEKDEVMNAFHRGEI 526 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 LL++TTVIEVG++V +A+I+ +E AE FGL+QLHQLRGRVGRG S CIL+ SK Sbjct: 527 SLLVSTTVIEVGVNVPNATIMCVEGAERFGLSQLHQLRGRVGRGAHQSYCILVSD---SK 583 Query: 603 N--SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 N S RL +++ +DGF +AE+DL R G++ G+ QSG+P +A +L AR Sbjct: 584 NDVSQERLKLMEQIQDGFELAEQDLLIRGSGQLFGLAQSGLPDLRVANIIKDIEILVKAR 643 Query: 661 KDAKHILTQ 669 KD Q Sbjct: 644 KDVLDFANQ 652 >gi|254178770|ref|ZP_04885424.1| ATP-dependent DNA helicase RecG [Burkholderia mallei ATCC 10399] gi|160694684|gb|EDP84692.1| ATP-dependent DNA helicase RecG [Burkholderia mallei ATCC 10399] Length = 904 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 246/662 (37%), Positives = 371/662 (56%), Gaps = 29/662 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D + E+ G + + +R+ L +D Sbjct: 231 TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 290 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 E+ L F +K + G+++ V G ++ + +VHP + D + PL +A Sbjct: 291 AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQA 346 Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 VY G+S +K I AL+R P+ LP I + LQ P +A+A ++H+P Sbjct: 347 LTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHHP 406 Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IAQ 263 D + T PA R+ +DELLA Q++L ++ + + + ++ Sbjct: 407 GVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRARDDGAALSA 466 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 ++ +PF+ T +QE + +I D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q Sbjct: 467 RLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQ 526 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 A +MAP ILA+QH ++ + + + V + G++ +R ALE A G A ++IGTH Sbjct: 527 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTH 586 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRT 434 A+ QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRT Sbjct: 587 AMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRT 646 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L +T D+D+S I E P GR PI T ++ R DEVI R++ G++ YW+CP IEE Sbjct: 647 LAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEE 706 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ VE + +L + ++HGR++ +K +VMD+F +LL+ATTVIEV Sbjct: 707 SETLQLQTAVETYETLAVALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEV 766 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+L+Y PLS RL ++ Sbjct: 767 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRE 826 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 T DGF IA DL+ R GE LG +QSG A E L+E AR A ++ P++ Sbjct: 827 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEV 886 Query: 674 TS 675 + Sbjct: 887 VA 888 >gi|325917666|ref|ZP_08179860.1| ATP-dependent DNA helicase RecG [Xanthomonas vesicatoria ATCC 35937] gi|325536130|gb|EGD07932.1| ATP-dependent DNA helicase RecG [Xanthomonas vesicatoria ATCC 35937] Length = 714 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 254/711 (35%), Positives = 388/711 (54%), Gaps = 54/711 (7%) Query: 2 RPSFLNPLFA-----PLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDR 55 R S P A PLS+ GVG K + F ++ I DL + P + DR Sbjct: 3 RASVATPSLAVAGQVPLSSLPGVGPKVADKFAARGI-------LSVQDLWLHLPLRYEDR 55 Query: 56 HYRPKISEISEERIVTITGYISQ-HSSFQLQKRRP-YKILLNDGT-GEITLLFFYRKTEM 112 I+++ I G + F+ RP ++ ++D + G + L FF+ + Sbjct: 56 TRLTTIAQLQSGVPAQIEGRVEAVERGFRF---RPVLRVAISDDSHGSVVLRFFHFRAAQ 112 Query: 113 LKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDL 170 + F G ++ V G K +N +VHP Y + +D + ++ VY + G+ Sbjct: 113 VAQ-FAVGTRVRVFGMPKPGQNGWEIVHPSYRVLAADEDADLGDCLDPVYPVLEGVGPAT 171 Query: 171 FKKIIVEALSRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FE 219 +K+I +AL RLP + P W LQ + PS+ A +H P D Sbjct: 172 LRKLIGQALERLPPEAALELLPPHW-----LQDERLPSLRSALLTMHRPPVNTDPQQLLA 226 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 PA++RLA +ELLA Q++L R ++ + G + +++ +PF T +Q+ Sbjct: 227 GGHPAQQRLALEELLAHQLSLRRQRIALQRFHAPVLPGNGTLVRRLRAALPFQLTGAQQR 286 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 + I D++Q + MLR++QGDVGSGKT+VA +A AVE G Q + AP +LA+QH Sbjct: 287 VFEQIAHDLAQPSPMLRLVQGDVGSGKTVVAAMAAMLAVEQGKQVALAAPTELLAEQHLT 346 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 ++ + + + + + G + R A+ +A GQA +++GTHAL Q+++ + L L I Sbjct: 347 NLRGWLEPLGVRIVWLAGKVTGKARAAAMAEVASGQAQVVVGTHALMQEAVVFRDLALAI 406 Query: 400 VDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 +DEQHRFGV QRL L K A PH L+MTATPIPRTL +++ D+D+S I E P GR Sbjct: 407 IDEQHRFGVHQRLALRDKGAAAGSVPHQLVMTATPIPRTLAMSTYADLDVSAIDELPPGR 466 Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-----------FRSVV 504 P++T+++ R +++ER++ +EG++AYW+C IEE ++ ++ Sbjct: 467 TPVQTIVLSAERRPDLVERIRAACAEGRQAYWVCTLIEESEDPGKAAPAGPPRIEAQAAE 526 Query: 505 ERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 F +L E +A++HGRM +K+ M FK G LL+ATTVIEVG+DV +AS++ Sbjct: 527 VTFQALSEQLPGVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLM 586 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623 IIENAE GLAQLHQLRGRVGRG SSC+LLY PLS + RL ++ T DGF+IAE+ Sbjct: 587 IIENAERLGLAQLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEK 646 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 DL+ R GE+LG +Q+G+ F IA LL + A+ +L + P++ Sbjct: 647 DLELRGPGELLGTRQTGLASFRIADLARDAGLLPRVQVLAERLLAEAPEIA 697 >gi|300725269|ref|YP_003714598.1| DNA helicase [Xenorhabdus nematophila ATCC 19061] gi|297631815|emb|CBJ92536.1| DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration [Xenorhabdus nematophila ATCC 19061] Length = 693 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 248/659 (37%), Positives = 377/659 (57%), Gaps = 44/659 (6%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L+T RGVG ++K+ G N + L + D+ + I+E+ T+ Sbjct: 11 LTTLRGVGTNQ---VTKLAKLGLVNLQDLLLHLP---LRYEDQTHLYTINELLPGIYATV 64 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 TG + + ++ +RR ++DGTG +TL FF T +KN EG+ I G+I++ Sbjct: 65 TGEVLR-TNVVFGRRRIMTCQISDGTGVLTLRFF-NFTAAMKNNLAEGKHIVAYGEIRRG 122 Query: 133 KNRIIMVHPHYIFHNS------QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL---- 182 ++HP Y QD P VY G+ +K+I +AL L Sbjct: 123 NQGPEIIHPEYKVQQHAARVQLQDTLTP----VYPTTEGVRQTTLRKLIEQALEILDTCA 178 Query: 183 --PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS------PARERLAYDELL 234 +LPE ++++ S+ A +++H P D T PA+ RL +ELL Sbjct: 179 VNELLPEEFSRNMI------SLPNALHMLHRP--PPDISLTDLENGRHPAQRRLILEELL 230 Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 A +++L +R ++ P++ + + Q++L +PFSPT +Q + +I D+ + M Sbjct: 231 AHHLSMLAVRAGAQRFHAQPLSADDTLKQQLLSQLPFSPTGAQARVVAEIEHDLEKNVPM 290 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 +R++QGDVGSGKTLVA +A A+ G Q +MAP +LA+QH +++ + + V Sbjct: 291 MRLIQGDVGSGKTLVAALAAVRAMVHGKQVALMAPTELLAEQHANTFRQWLEPLGMQVGW 350 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 + G R+ E IA GQ ++IIGTHA+FQ+ +++ L LVI+DEQHRFGV QRL L Sbjct: 351 LAGKQKGKARQAQQEAIASGQVNMIIGTHAMFQEQVKFAGLALVIIDEQHRFGVHQRLAL 410 Query: 415 TQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470 +K PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R ++ Sbjct: 411 WEKGREQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDTRRND 470 Query: 471 VIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDI 528 +I+R+K L EG++AYW+C IE+ + ++ L I ++HGRM Sbjct: 471 IIQRIKSACLEEGRQAYWVCTLIEDSEVLEAQAAQATSEELALALPELKIGLVHGRMKSA 530 Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588 +K+++M++FK G +LL+ATTVIEVG+DV +AS++II+N E GLAQLHQLRGRVGRG Sbjct: 531 EKQAIMEAFKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAI 590 Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 S C+LLY PL+ + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F IA Sbjct: 591 ASHCVLLYKTPLTHTAKIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNTEFRIA 649 >gi|121599993|ref|YP_991657.1| ATP-dependent DNA helicase RecG [Burkholderia mallei SAVP1] gi|124384498|ref|YP_001027152.1| ATP-dependent DNA helicase RecG [Burkholderia mallei NCTC 10229] gi|126451131|ref|YP_001082101.1| ATP-dependent DNA helicase RecG [Burkholderia mallei NCTC 10247] gi|121228803|gb|ABM51321.1| ATP-dependent DNA helicase RecG [Burkholderia mallei SAVP1] gi|124292518|gb|ABN01787.1| ATP-dependent DNA helicase RecG [Burkholderia mallei NCTC 10229] gi|126244001|gb|ABO07094.1| ATP-dependent DNA helicase RecG [Burkholderia mallei NCTC 10247] Length = 902 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 246/662 (37%), Positives = 371/662 (56%), Gaps = 29/662 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D + E+ G + + +R+ L +D Sbjct: 229 TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 288 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 E+ L F +K + G+++ V G ++ + +VHP + D + PL +A Sbjct: 289 AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQA 344 Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 VY G+S +K I AL+R P+ LP I + LQ P +A+A ++H+P Sbjct: 345 LTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHHP 404 Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IAQ 263 D + T PA R+ +DELLA Q++L ++ + + + ++ Sbjct: 405 GVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRARDDGAALSA 464 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 ++ +PF+ T +QE + +I D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q Sbjct: 465 RLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQ 524 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 A +MAP ILA+QH ++ + + + V + G++ +R ALE A G A ++IGTH Sbjct: 525 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTH 584 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRT 434 A+ QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRT Sbjct: 585 AMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRT 644 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L +T D+D+S I E P GR PI T ++ R DEVI R++ G++ YW+CP IEE Sbjct: 645 LAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEE 704 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ VE + +L + ++HGR++ +K +VMD+F +LL+ATTVIEV Sbjct: 705 SETLQLQTAVETYETLAVALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEV 764 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+L+Y PLS RL ++ Sbjct: 765 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRE 824 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 T DGF IA DL+ R GE LG +QSG A E L+E AR A ++ P++ Sbjct: 825 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEV 884 Query: 674 TS 675 + Sbjct: 885 VA 886 >gi|53726168|ref|YP_103944.1| ATP-dependent DNA helicase RecG [Burkholderia mallei ATCC 23344] gi|52429591|gb|AAU50184.1| ATP-dependent DNA helicase RecG [Burkholderia mallei ATCC 23344] Length = 686 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 246/662 (37%), Positives = 371/662 (56%), Gaps = 29/662 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D + E+ G + + +R+ L +D Sbjct: 13 TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 72 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 E+ L F +K + G+++ V G ++ + +VHP + D + PL +A Sbjct: 73 AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQA 128 Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 VY G+S +K I AL+R P+ LP I + LQ P +A+A ++H+P Sbjct: 129 LTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHHP 188 Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IAQ 263 D + T PA R+ +DELLA Q++L ++ + + + ++ Sbjct: 189 GVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRARDDGAALSA 248 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 ++ +PF+ T +QE + +I D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q Sbjct: 249 RLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQ 308 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 A +MAP ILA+QH ++ + + + V + G++ +R ALE A G A ++IGTH Sbjct: 309 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTH 368 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRT 434 A+ QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRT Sbjct: 369 AMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRT 428 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L +T D+D+S I E P GR PI T ++ R DEVI R++ G++ YW+CP IEE Sbjct: 429 LAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEE 488 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ VE + +L + ++HGR++ +K +VMD+F +LL+ATTVIEV Sbjct: 489 SETLQLQTAVETYETLAVALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEV 548 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+L+Y PLS RL ++ Sbjct: 549 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRE 608 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 T DGF IA DL+ R GE LG +QSG A E L+E AR A ++ P++ Sbjct: 609 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAATRLIAAHPEV 668 Query: 674 TS 675 + Sbjct: 669 VA 670 >gi|160871992|ref|ZP_02062124.1| ATP-dependent DNA helicase RecG [Rickettsiella grylli] gi|159120791|gb|EDP46129.1| ATP-dependent DNA helicase RecG [Rickettsiella grylli] Length = 721 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 245/659 (37%), Positives = 371/659 (56%), Gaps = 39/659 (5%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS 77 GVG K S +L K CG + + L + +R I + E + ITG I Sbjct: 28 GVGPKISHYLHK---CGIHHLQDLLLHLP---LRYENRTQLTPIRSVREGQHALITGIIQ 81 Query: 78 QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137 H +++ ++ Y L+D TG +TL FF+ K + ++ F +G ++ G I KNR Sbjct: 82 DHP-LRIKNKKSYSCKLSDETGSVTLRFFHLKAKQIQQ-FKKGLRLLCFGPIHAQKNRFF 139 Query: 138 ---MVHPHYIF---HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--------- 182 M+HP Y F H S + P + ++Y G++ L+ K+I + L Sbjct: 140 EREMIHPDYEFLRPHQSPLLP-PYLTSIYPSTPGMTQRLWHKLITQVFHLLFEMTTEKPF 198 Query: 183 -----PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSP----ARERLAYDEL 233 P+++ + LL++ + PS+ +A IH P + + A++RLA +EL Sbjct: 199 VHKQQHYFPDYLPEHLLKRIALPSLLDALYYIHRPPANAPLDLLARRKHIAQQRLALEEL 258 Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 LA +++ M+K+ I + + ++ +PF T SQ+ IK+I QDM + Sbjct: 259 LAHSLSVQQMKKKRAAGIAPRFKLNSALMKRFQTALPFQLTSSQQRIIKEINQDMQRATP 318 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R+LQGDVGSGKT+VA A A+ Q +MAP +L++QHY+ ++ V Sbjct: 319 MQRLLQGDVGSGKTIVAAFAALLAIANHYQVALMAPTELLSEQHYQHFHRWLTPLGFHVV 378 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 + + +++ L+ I G+AHI IGTHALFQ+ + + L +I+DEQHRFGV+QRL Sbjct: 379 CLNARLQTTAKKQILDEIKTGKAHIAIGTHALFQNEVYFSNLGFIIIDEQHRFGVKQRLD 438 Query: 414 L----TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469 L QK H L MTATPIPRTL +TS D+DIS + E P GR P+KT++IP R Sbjct: 439 LWKKSQQKNLQAHQLFMTATPIPRTLAMTSFTDLDISFLDELPPGRLPVKTLVIPERRRS 498 Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDI 528 +VIE++++ E K+ YW+CP IEE ++++ F +L T + +IHGR+ Sbjct: 499 KVIEKVRITCGEKKQVYWVCPLIEESGLQHYQAAETLFKTLKADLTDLRLGLIHGRLHST 558 Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588 +KES+M FK G LL++T++IEVG+DV +A++++IENAE GLAQLHQLRGRVGR Sbjct: 559 EKESIMRDFKKGVIDLLVSTSIIEVGVDVSNANLMVIENAERLGLAQLHQLRGRVGRSSS 618 Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 S CILLY LS + RLS+++ + DGF IA++DL+ R GEI G++Q+G + IA Sbjct: 619 KSCCILLYQ-SLSLLAKERLSIMRLSNDGFTIAQKDLELRGPGEIWGLRQTGWKQLRIA 676 >gi|289422304|ref|ZP_06424154.1| ATP-dependent DNA helicase RecG [Peptostreptococcus anaerobius 653-L] gi|289157249|gb|EFD05864.1| ATP-dependent DNA helicase RecG [Peptostreptococcus anaerobius 653-L] Length = 685 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 247/650 (38%), Positives = 375/650 (57%), Gaps = 23/650 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 D LFY P F DR K+ ++ + V I I + SS +++K ++ + D T Sbjct: 33 DALFYFPRQFEDRSRVKKVFQLEDGEKVAIEVKIERISSRRVRKLSITELFVKDDTKACK 92 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162 L+FF + L+N F G ++ V G +K I+ +H I ++ D N +I VY L Sbjct: 93 LVFFNKG--YLRNTFRVGDEVKVFGTVKIRPTGIVEMHNCEIEYDKLDKNTGIIIPVYKL 150 Query: 163 PTGLS-VDLFKKIIVEALSRLP------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215 G++ D+ ++ + +P LP+WI + K + I A +H P K Sbjct: 151 SNGVTNKDVMG--MIRNIFEMPDIKIKEYLPQWI----IDKYNLCDINFAIKSMHFPEKK 204 Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275 E A RL ++ELL Q+ L ++ + GI V K + I + F T+ Sbjct: 205 ---ENVKIAMFRLIFEELLFLQLGLFTIKGDNRIASGISQPVH-KDLKAIENGLGFKLTR 260 Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 +Q+ A DIL+DM M R++QGDVGSGKT VA +A+A V G Q MAP ILA Sbjct: 261 AQQRAYDDILRDMESGKVMNRLVQGDVGSGKTAVAQLALANTVLNGYQGAYMAPTEILAN 320 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 QH+E + +NT I VE++TG++ + ER+ +G+ I+IGTHAL +D +++ KL Sbjct: 321 QHFESFLDFFKNTPIRVELLTGSVSKKRSEDIRERLKNGEIDILIGTHALIEDKVEFNKL 380 Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 LVI DEQHRFGV+QR +LT KA +P VL+MTATPIPRTL L GD+DIS I E P GR Sbjct: 381 GLVITDEQHRFGVRQRGRLTAKALSPDVLVMTATPIPRTLALILYGDMDISIIDELPPGR 440 Query: 456 KPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 + I T+ + ++ D ER ++ + G + Y +CP +EE + + +SV E ++ L F Sbjct: 441 QKIDTIAVYEDKRDIYYERNIRKEVEMGHQVYVVCPLVEESEVLDVKSVTEVYDELQYRF 500 Query: 515 TSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 + I ++HG+M +K+ VM++FKN +L++TTVIEVG++V +A+I+++ENAE FG Sbjct: 501 FTDLRIGLLHGKMKPSEKDEVMEAFKNHELDILVSTTVIEVGVNVPNATIMVVENAERFG 560 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 LAQLHQLRGRVGRG+ S C L+Y S R+ +++ T DGF+I+E+DL+ R G+ Sbjct: 561 LAQLHQLRGRVGRGKSKSYCCLIYKSR-SDVCKKRMDIMEETNDGFVISEKDLEIRGPGD 619 Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682 G +Q G+P+ +A H +L + + +A+ I ++DP L V + +R Sbjct: 620 FFGTRQHGLPELKVANLFKHIKILRMVQLEAREIYSKDPGLDFVENKGLR 669 >gi|238562011|ref|ZP_00441106.2| ATP-dependent DNA helicase RecG [Burkholderia mallei GB8 horse 4] gi|238523487|gb|EEP86925.1| ATP-dependent DNA helicase RecG [Burkholderia mallei GB8 horse 4] Length = 902 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 246/662 (37%), Positives = 371/662 (56%), Gaps = 29/662 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D + E+ G + + +R+ L +D Sbjct: 229 TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 288 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 E+ L F +K + G+++ V G ++ + +VHP + D + PL +A Sbjct: 289 AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQA 344 Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 VY G+S +K I AL+R P+ LP I + LQ P +A+A ++H+P Sbjct: 345 LTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHHP 404 Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IAQ 263 D + T PA R+ +DELLA Q++L ++ + + + ++ Sbjct: 405 GVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRARDDGAALSA 464 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 ++ +PF+ T +QE + +I D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q Sbjct: 465 RLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQ 524 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 A +MAP ILA+QH ++ + + + V + G++ +R ALE A G A ++IGTH Sbjct: 525 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTH 584 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRT 434 A+ QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRT Sbjct: 585 AMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRT 644 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L +T D+D+S I E P GR PI T ++ R DEVI R++ G++ YW+CP IEE Sbjct: 645 LAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEE 704 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ VE + +L + ++HGR++ +K +VMD+F +LL+ATTVIEV Sbjct: 705 SETLQLQTAVETYETLAVALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEV 764 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+L+Y PLS RL ++ Sbjct: 765 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRE 824 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 T DGF IA DL+ R GE LG +QSG A E L+E AR A ++ P++ Sbjct: 825 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAATRLIAAHPEV 884 Query: 674 TS 675 + Sbjct: 885 VA 886 >gi|167040378|ref|YP_001663363.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter sp. X514] gi|300914462|ref|ZP_07131778.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter sp. X561] gi|307724302|ref|YP_003904053.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter sp. X513] gi|166854618|gb|ABY93027.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter sp. X514] gi|300889397|gb|EFK84543.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter sp. X561] gi|307581363|gb|ADN54762.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter sp. X513] Length = 681 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 256/675 (37%), Positives = 392/675 (58%), Gaps = 24/675 (3%) Query: 8 PLFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 PL + +GVG K + L K+ IN DLLFY P + +R KI ++ Sbjct: 2 PLNLDIQYVKGVGPKRAKLLKKLGINTVE-------DLLFYFPKDYENRSDILKIEDLKV 54 Query: 67 ERIVTITGYISQH-SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 T GYI+ + K K+ + DGTG + L+++ +KN F G + + Sbjct: 55 GEKQTFRGYIAGSPREIKTSKVIITKVPVKDGTGVVELVWY--NQPYIKNNFKIGEEYII 112 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRL 182 GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ AL + Sbjct: 113 NGKLQFKYGQLIVENP--VLEKSEDFKLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYV 170 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 + E+ +++ L +K I A I+ P+ + A+ R Y EL Q+AL L Sbjct: 171 QEVEEFFDEEFLSEKGLMDIKNALININFPQNEA---YLEQAKYRFKYQELFLLQMALFL 227 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 M++ K++ GI E + L +PF T +Q +K+I+ DM+ M R++QGDV Sbjct: 228 MKRSVKEKKGIKF--EQADLKPFLMGLPFKLTLAQIKVLKEIIADMNSHKVMNRLVQGDV 285 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + +++G++ + Sbjct: 286 GSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISPS 345 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 ++++ LE+I +G I++GTHAL +D++ + L L I DEQHRFGV+QR LTQK P Sbjct: 346 NKKEVLEKIKNGDYDIVVGTHALIEDNVIFNNLGLCITDEQHRFGVRQRALLTQKGENPD 405 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 VL+MTATPIPRT L GD+DIS I + P GRK +KT +I + ++ E + +G Sbjct: 406 VLVMTATPIPRTFALILYGDLDISIIDQLPPGRKKVKTYVISSSVREKAYEFAMKEVKKG 465 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNG 540 ++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE VM+ F NG Sbjct: 466 RQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMADSDKEKVMEEFVNG 525 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L++TTVIEVG++V +A+++I+ENAE FGLAQLHQLRGRVGR E S CIL+ + Sbjct: 526 KIDILVSTTVIEVGVNVPNATVMIVENAERFGLAQLHQLRGRVGRSEFQSYCILISYSN- 584 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S + RL VL T DGF IAE+DL+ R GE LG++Q G+P+F IA +LE + Sbjct: 585 SDIAKKRLGVLAQTSDGFKIAEKDLEIRGPGEFLGLRQHGLPEFKIANIFEDIDVLERVQ 644 Query: 661 KDAKHILTQDPDLTS 675 KD + +L +DP L + Sbjct: 645 KDVEELLEKDPKLEN 659 >gi|126700178|ref|YP_001089075.1| ATP-dependent DNA helicase RecG [Clostridium difficile 630] Length = 689 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 249/674 (36%), Positives = 389/674 (57%), Gaps = 18/674 (2%) Query: 5 FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64 +L L+ + +G+G K + L+K+ DLL+Y P F DR+ KI+++ Sbjct: 3 YLLDLYKDVQYVKGIGPKKADKLNKL------GIFTLKDLLYYFPRQFEDRNNLKKIAQL 56 Query: 65 SEERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123 + VTI IS ++F ++ KI + D TG L+FF + +KN F G I Sbjct: 57 EDGEKVTIKAVISSINTFSPKEGMTLTKIDVKDETGSAKLVFFNK--SYIKNTFRPGDSI 114 Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRL 182 V GK+KK N + + + + N VY L G++ II L + Sbjct: 115 LVFGKVKKKFNNLELTSCELEYLTNSPKNTCRFMPVYQLTYGVTNKEIMSIIRTVLEDKE 174 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 ++ E++ + +++K SI A IH+P + + A R+ ++ELL Q+ L + Sbjct: 175 LIIQEYMPQRIIEKYRLCSIDFAVRNIHSPSSKESLKI---ALYRIVFEELLILQLGLFV 231 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 + KE GI K +KI+ +PF TK+Q A+ +I+QDM+ + M R++QGDV Sbjct: 232 FKSGRNKEDGIKFET-SKDLKKIISALPFKLTKAQNRALDEIIQDMNLEKIMNRLVQGDV 290 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKT+VAL+A+A V G Q +MAP ILA QHY + + ++ I V ++ G++ + Sbjct: 291 GSGKTVVALLALANCVLNGYQGALMAPTEILAGQHYISLTESLKDFGINVGLLIGSLTKK 350 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 + LE+I + + I+IGTHAL +D +++ + LVI DEQHRFGV QR KL+ K P Sbjct: 351 QKDTVLEQIKNNEIDILIGTHALIEDKVEFNNIGLVITDEQHRFGVMQRSKLSLKGANPD 410 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL-KVVLSE 481 +L+MTATPIPRTL L GD+DIS I E P GR+PI+T+ I ++ D L + + Sbjct: 411 ILVMTATPIPRTLALILYGDLDISIIDELPPGRQPIETIAIEKSKRDRAYNNLVRREVES 470 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-SIAIIHGRMSDIDKESVMDSFKN 539 G++ Y +CP +EE + +S VE L E+F + ++HG+M +K+ VM FK+ Sbjct: 471 GRQVYIVCPLVEESEAIEAKSAVELVEELRAEYFHDLRLGLLHGKMKSSEKDEVMRLFKD 530 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 +L++T VIEVG++V +A+++IIENAE FGLAQLHQLRGRVGRG S C+L+Y Sbjct: 531 KEIDILVSTIVIEVGVNVPNATLMIIENAERFGLAQLHQLRGRVGRGSHKSYCVLIYDSK 590 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 + R+++++ T DGF I+E+DL+ R GE G +Q G+P+ +A H +L++A Sbjct: 591 -TDVCRQRMAIMEETNDGFKISEKDLEIRGPGEFFGTRQHGLPELKVANLFKHIKILKLA 649 Query: 660 RKDAKHILTQDPDL 673 +++A++IL +D +L Sbjct: 650 QQEARYILGEDNNL 663 >gi|300690475|ref|YP_003751470.1| ATP-dependent DNA helicase [Ralstonia solanacearum PSI07] gi|299077535|emb|CBJ50161.2| ATP-dependent DNA helicase [Ralstonia solanacearum PSI07] Length = 729 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 250/666 (37%), Positives = 373/666 (56%), Gaps = 43/666 (6%) Query: 40 RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ------HSSFQLQKRRPYKIL 93 R +DL+ + P + D + I+E TG+ +Q + L+ RR + Sbjct: 55 RDVDLVLHLPMRYEDET---TLLTIAEAVARANTGWAAQVEGGVTRNEVALRPRRQLVVH 111 Query: 94 LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153 + D +GE+ L F +K EG ++ V G+++ MVHP + + D Sbjct: 112 IADDSGELVLRFLNFYGSQVKQ-MAEGVRLRVRGEVRGGFFGAEMVHP-TVRAVAPDEPL 169 Query: 154 P-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP----SIAEAFNI 208 P + VY G++ +K I+ AL R P LPE + +L++ P + AEA + Sbjct: 170 PDRLTPVYPSTAGVAQAYLRKAILNALGRTP-LPETLPDNLMRGPLAPLKLMAPAEAVRL 228 Query: 209 IHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPI----NVEG 259 +H P D E T PA R+ +DELLA Q++L R Q + P+ +G Sbjct: 229 LHQPTPDVDEHSLIERTHPAWLRIKFDELLAQQLSL--KRAQAARRTRSAPVLRTGGADG 286 Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319 +A + + +PF T +Q ++I D+++ M R+LQGDVGSGKT++A +A A++ Sbjct: 287 LLA-RFMAALPFKLTGAQARVWEEIRADLARPYPMQRLLQGDVGSGKTVIAALAACQAID 345 Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379 AG QA +MAP +LA+QHY + + + + + + G++ + + +A R+A G A ++ Sbjct: 346 AGWQAALMAPTELLAEQHYRKLSAWLEPLGVEIVWLAGSLKRKQKDEAAARVAAGAAQLV 405 Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-----------PHVLLMTA 428 IGTHAL QD++ + +L L +VDEQHRFGV QRL L KA PH L+M+A Sbjct: 406 IGTHALIQDTVAFARLGLAVVDEQHRFGVAQRLALRGKAGGADTPIAETAQVPHQLMMSA 465 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488 TPIPRTL +T D+D+S I E P GR P+ T ++ R DEVIER+ EG++ YW+ Sbjct: 466 TPIPRTLAMTYYADLDVSAIDELPPGRTPVVTRLVNDARRDEVIERIHAAAREGRQVYWV 525 Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 CP IEE + ++ VE F +L + + ++HGR+ +DK +VM +F G +L+A Sbjct: 526 CPLIEESEALQLQTAVETFETLSQSLAGLKVGLVHGRLPSVDKAAVMSAFAGGELHVLVA 585 Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607 TTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S CILLY PLS + R Sbjct: 586 TTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCILLYQAPLSPTAKQR 645 Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHI 666 L ++ T DGF IA DL R GE LG +QSG A HD+ ++E A+ A+ + Sbjct: 646 LQTMRETTDGFEIARRDLDIRGPGEFLGARQSGEAMLRFADLN-HDAWMVEFAQGAAEQM 704 Query: 667 LTQDPD 672 L + P+ Sbjct: 705 LARFPE 710 >gi|72382000|ref|YP_291355.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str. NATL2A] gi|72001850|gb|AAZ57652.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str. NATL2A] Length = 846 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 259/701 (36%), Positives = 395/701 (56%), Gaps = 57/701 (8%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L + +S+ +GVG K + LS + DL+ Y P ++D I + + Sbjct: 147 LQSTISSVKGVGSKQAERLSTL------GLILIRDLINYFPRDYVDYSSLKTIDKTQAGQ 200 Query: 69 IVTITGYISQHSSFQLQKRRPYKIL---LNDGTG--EITLLFFYRKTEML------KNVF 117 VTI + + SSF+ K IL + D TG +IT F R++ + ++++ Sbjct: 201 NVTIVAKVRRCSSFKSPKNPNLAILELFIKDKTGGMKITRFFAGRRSSSIAYVKSQQSLY 260 Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE------------------AV 159 G + V+G +K+ K + +N PLIE V Sbjct: 261 PVGATVAVSGLVKESKY-------------GKSLNDPLIEIIDSPNDYLKSRTIGQILPV 307 Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 YSL G++ D F+ +I L + + + K+ L + P+ EAF IHNP + Sbjct: 308 YSLTEGITADKFRDLIQSILYLTSNIKDPLPKETLNRLDLPNRKEAFFHIHNPENSMTL- 366 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQ---KILRNIPFSPTKS 276 + A+ R+ +DE L Q++LLL R KK +++E I K L +PFS T + Sbjct: 367 --AKAKRRIVFDEFLLLQLSLLLRRDLHKKSDSPQLSIEPNINSLVGKFLSILPFSLTNA 424 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q +K+I D+ + M R+LQGDVGSGKT++A+ A+ AV++G Q MAP +LA Q Sbjct: 425 QRRVLKEIESDIVKAEPMSRLLQGDVGSGKTVIAISALLTAVQSGWQGAFMAPTEVLASQ 484 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 H++ + K+ +I V+++TG+ P++ R++ L + +G I++GTHALF+D + + +L Sbjct: 485 HFQTLSKWIPQLEINVDLLTGSTPKSRRKQILTDLVNGSTKILVGTHALFEDPVVFERLG 544 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 LV+VDEQHRFGV+QR KL K PH+L MTATPIPRTL LT GD+D+S++ E P GR Sbjct: 545 LVVVDEQHRFGVKQRNKLLNKGLQPHLLTMTATPIPRTLALTLHGDLDVSQLDELPPGRT 604 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 PI T +I N + ++ + +G + Y + P IEE ++ S V+ L S Sbjct: 605 PINTQLISPNEKKYAYDLIRSEIKKGHQIYVVLPLIEESEKLELSSAVDVHYQLSTEIFS 664 Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 ++ ++HG+M ++K+ V+ +F N +L++TTVIEVG+DV +AS+++IE+++ FGLA Sbjct: 665 EFNVELLHGKMKSVEKQEVIQNFINKKSDILVSTTVIEVGVDVPNASVMLIEDSDRFGLA 724 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG S C LL H +K S RL VL N+ DGF I+E DL+ R G++L Sbjct: 725 QLHQLRGRVGRGASKSYC-LLSHQNKNKLSRQRLDVLVNSNDGFEISEIDLRFRGPGQVL 783 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 G KQSG+P F +A +LEIARK+A+ IL DP L++ Sbjct: 784 GTKQSGLPDFALASLADDADVLEIARKEARIILDSDPLLSN 824 >gi|331091213|ref|ZP_08340054.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium 2_1_46FAA] gi|330404660|gb|EGG84199.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium 2_1_46FAA] Length = 686 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 248/690 (35%), Positives = 387/690 (56%), Gaps = 28/690 (4%) Query: 10 FAPLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRP-KISEISE 66 + +S +GVG+K K I G DL+ Y P ++ D + +P +ISE+ E Sbjct: 4 LSNISELKGVGEKTEKLFYKLGIFTVG--------DLIRYFPRTY-DVYEKPVEISEVEE 54 Query: 67 ERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123 R VT+TG I Q+ R +I L D +G + +++F + LKN G I Sbjct: 55 GRTVTVTGTI--WGVVQVTGTRAMQITTLTLKDISGTLKVIWF--RMPFLKNTLRSGSVI 110 Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182 T+ GK+ K K + M P + +S+ ++ VY L G++ + K+ +AL L Sbjct: 111 TLRGKVTKRKRVLTMEQPEIFYPSSKYQEKENTLQPVYPLTAGITNHMIAKMEQQALENL 170 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 + E + ++ + A IH P+ +++ + ARERL ++E L ++L Sbjct: 171 DLKKEILPAEIRLRYHLAEYNYAVRGIHFPKNKEEYYY---ARERLVFEEFLLFILSLRQ 227 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 ++++ ++ V K ++ L +P+ T +Q+ ++I +D++ + M R++QGDV Sbjct: 228 LKEKKERMQNTFSFVMPKEIEEFLDQLPYELTNAQKKVWEEIKRDITGEKVMTRLVQGDV 287 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMP 360 GSGKT++AL+ + G Q +MAP +LA+QHY I++ I VE++TG+M Sbjct: 288 GSGKTIIALLGLMLVGLNGYQGAMMAPTEVLAKQHYHSIREMLDKYHIPLKVELLTGSMA 347 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 +R A E+I G+A +I+GTHAL Q+ ++Y L LVI DEQHRFGV+QR KL++K Sbjct: 348 AKEKRIAYEKIGTGEADLIVGTHALIQEKVEYKNLALVITDEQHRFGVKQREKLSEKGNT 407 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 PH+L+M+ATPIPRTL + GD+DIS I E PA R PIK ++ + E +K + Sbjct: 408 PHILVMSATPIPRTLAIILYGDLDISVIDELPANRLPIKNCVVDTSYRKTAYEFMKKQIG 467 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFK 538 +G++ Y ICP +EE + +V + +L E I + +HG+M K+ +M+ F Sbjct: 468 QGRQCYVICPMVEESETLEAENVTDYAKALQEELGEQIHVQYLHGKMKQAQKDEIMERFA 527 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 ++L++TTVIEVGI+V +++I++IENAE FGLAQLHQLRGRVGRGE S CI + Sbjct: 528 RNDVQVLVSTTVIEVGINVPNSTIMMIENAERFGLAQLHQLRGRVGRGEHQSYCIFMTGT 587 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 SK + RL +L + DGF IA EDLK R G++ GI+QSG+ F +A L+ Sbjct: 588 K-SKETKKRLEILNKSNDGFKIAGEDLKLRGPGDLFGIRQSGILDFKLADVFQDAKTLQN 646 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLY 688 A + A +L DPDL +++R L Y Sbjct: 647 ANEAANQLLEDDPDLEREENENLRKYLQKY 676 >gi|295675566|ref|YP_003604090.1| ATP-dependent DNA helicase RecG [Burkholderia sp. CCGE1002] gi|295435409|gb|ADG14579.1| ATP-dependent DNA helicase RecG [Burkholderia sp. CCGE1002] Length = 762 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 250/661 (37%), Positives = 371/661 (56%), Gaps = 31/661 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D I + + G + + + RR + L D Sbjct: 89 TRDIDLVLHLPMRYEDETSLTPIGHLLPGGVAQTEGVVFDNE-IAYRPRRQLLVKLRDAE 147 Query: 99 G-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157 G E+ L F +K G ++ V G ++ + MVHP D + PL + Sbjct: 148 GDELVLRFLNFYGSQVKQ-MAPGARLRVRGDVRGGFFGMEMVHPTV---RVVDEDTPLPQ 203 Query: 158 A---VYSLPTGLSVDLFKKIIVEALSR--LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHN 211 A VY G+S +K I AL+R LP +LP + + L+ P++ +A +H+ Sbjct: 204 ALTPVYPSTAGVSQAYLRKAIDNALARTSLPELLPAPVARAFLEPLGVPALMDAVRTLHH 263 Query: 212 PRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG--IP---INVEGKIA 262 P D + T PA R+ ++ELLA Q++L + + +P + E + Sbjct: 264 PGAQSDETALIDGTHPAWVRIKFEELLAQQMSLKRAHDERRNRAAPAMPRRKLGDESALV 323 Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 ++L+ +PFS T +Q+ +I D++Q + M R+LQGDVGSGKT+VA +A A A++AG Sbjct: 324 ARLLKALPFSLTAAQQRVGGEIALDLTQPHPMQRLLQGDVGSGKTIVAALAAAQAIDAGY 383 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 QA +MAP ILA+QH ++ + + + V + G++ +R A+E A G A ++IGT Sbjct: 384 QAALMAPTEILAEQHARKLRGWLEPLGVNVAWLAGSLKTKEKRAAIEAAALGTAQLVIGT 443 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPR 433 HA+ QD++++ +L LVIVDEQHRFGV QRL L KA PH L+M+ATPIPR Sbjct: 444 HAIIQDAVEFARLGLVIVDEQHRFGVAQRLALRAKAQGAADGASDFQPHQLMMSATPIPR 503 Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493 TL +T D+D+S I E P GR PI T ++ R +EVI R++ G++ YW+CP IE Sbjct: 504 TLAMTYYADLDVSTIDELPPGRTPILTKLVSDARREEVIGRVREAALTGRQVYWVCPLIE 563 Query: 494 EKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552 E + ++ VE + +L + ++HGR++ +K +VMD+F +LL+ATTVIE Sbjct: 564 ESETLQLQTAVETYETLVAALPELKVGLVHGRLAPAEKATVMDAFSRNEIQLLVATTVIE 623 Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612 VG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+LLY PLS + RL ++ Sbjct: 624 VGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAASVCVLLYTGPLSMTARARLQTMR 683 Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 T DGF IA DL+ R GE LG +QSG A + L+E AR+ A +L Q PD Sbjct: 684 ETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLQNDQHLIEPAREAAATLLDQYPD 743 Query: 673 L 673 + Sbjct: 744 V 744 >gi|170702358|ref|ZP_02893251.1| ATP-dependent DNA helicase RecG [Burkholderia ambifaria IOP40-10] gi|170132743|gb|EDT01178.1| ATP-dependent DNA helicase RecG [Burkholderia ambifaria IOP40-10] Length = 686 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 241/660 (36%), Positives = 365/660 (55%), Gaps = 25/660 (3%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D I E+ I G + + + RR + + D Sbjct: 13 TRSIDLVLHLPMRYEDETTLTPIGELLPGGIAQTEGVVFDNE-VAYRPRRQLVVKIQDDD 71 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIE 157 GE +L F G+++ V G ++ + MVHP + D P ++ Sbjct: 72 GEQLVLRFLNFYGSQVKQMAVGQRLRVRGDVRGGFFGMEMVHPAVRVVEA-DAPLPQVLT 130 Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 VY G+S +K I A+ R P+ LP IE+D L+ P++A+A I+H+P Sbjct: 131 PVYPSTAGVSQAYLRKAIENAVERTPLPELLPPEIERDYLKPLGVPTLAQAVRILHHPGV 190 Query: 215 AKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-----EGKIAQKI 265 D + + PA R+ ++ELLA Q++L ++ + + + ++ Sbjct: 191 DSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAAPAMPRRAATDADALTTRL 250 Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 +PF+ T +Q + +I D++ + M R+LQGDVGSGKT+VA +A A++AG QA Sbjct: 251 YAALPFTLTGAQARVVDEIAHDLTLAHPMQRLLQGDVGSGKTVVAALAATQAIDAGYQAA 310 Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +MAP ILA+QH ++ + + + V + G++ +R A+E A G A ++IGTHA+ Sbjct: 311 LMAPTEILAEQHARKLRAWLEPLGVSVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTHAI 370 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLV 436 QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRTL Sbjct: 371 IQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAANGARDFQPHQLMMSATPIPRTLA 430 Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496 +T D+++S I E P GR P+ T ++ R +EVI R++ G++ YW+CP IEE + Sbjct: 431 MTYYADLEVSTIDELPPGRTPVLTRLVGDARREEVIARVREAALTGRQVYWVCPLIEESE 490 Query: 497 ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555 ++ VE + +L + ++HGR+S DK +VM++F +LL+ATTVIEVG+ Sbjct: 491 TLQLQTAVETYETLATALPELKVGLVHGRLSPADKAAVMEAFTRNEVQLLVATTVIEVGV 550 Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615 DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+LLY PLS RL ++ T Sbjct: 551 DVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYTGPLSLTGRERLKTMRETT 610 Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 DGF IA DL+ R GE LG +QSG A E L++ AR A ++ PD+ + Sbjct: 611 DGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLIDPARDAAARLIAAYPDVVT 670 >gi|307728506|ref|YP_003905730.1| ATP-dependent DNA helicase RecG [Burkholderia sp. CCGE1003] gi|307583041|gb|ADN56439.1| ATP-dependent DNA helicase RecG [Burkholderia sp. CCGE1003] Length = 755 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 253/662 (38%), Positives = 375/662 (56%), Gaps = 29/662 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D I + I G + + +R+ L +D Sbjct: 82 TRDIDLVLHLPMRYEDETSLTPIGHLLPGGIAQTEGVVFDNEIAYRPRRQLLVKLRDDAG 141 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 E+ L F +K + G ++ V G ++ + MVHP D + PL +A Sbjct: 142 DELVLRFLNFYGSQVKQMAI-GARLRVRGDVRGGFFGMEMVHPAV---RVVDEDTPLPQA 197 Query: 159 ---VYSLPTGLSVDLFKKIIVEALSR--LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 VY G+S +K I ALSR LP +LPE + + L+ PS+ +A +H+P Sbjct: 198 LTPVYPSTAGVSQAYLRKAIDNALSRTSLPELLPEAVARQWLEPLGVPSLMDAVRTLHHP 257 Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG--IP---INVEGKIAQ 263 D + T PA R+ ++ELLA Q++L ++ + +P + E + Sbjct: 258 GAQSDETALIDGTHPAWVRIKFEELLAQQMSLKRAHEERRTRAAPAMPRRKLGDESALVA 317 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 ++L +PFS T++QE +I D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q Sbjct: 318 RLLAALPFSLTRAQERVGGEIALDLTQPHPMQRLLQGDVGSGKTIVAALAAAQAIDAGYQ 377 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 A +MAP ILA+QH ++ + + + V + G++ +R A+E A G A ++IGTH Sbjct: 378 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKTKEKRAAIEAAALGTAQLVIGTH 437 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---------APHVLLMTATPIPRT 434 A+ QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRT Sbjct: 438 AIIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKARNAADGARDFQPHQLMMSATPIPRT 497 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L +T D+D+S I E P GR PI T ++ R +EVI R++ G++ YW+CP IEE Sbjct: 498 LAMTYYADLDVSTIDELPPGRTPILTKLVSDARREEVIGRVREAALTGRQVYWVCPLIEE 557 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ VE + +L ++ ++HGR++ +K +VMD+F +LL+ATTVIEV Sbjct: 558 SETLQLQTAVETYETLVAALPELNVGLVHGRLAPAEKAAVMDAFTRNEVQLLVATTVIEV 617 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+LLY PLS + RL ++ Sbjct: 618 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAASVCVLLYTGPLSMTARARLQTMRE 677 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 T DGF IA DL+ R GE LG +QSG A E L+E AR+ A +L Q P + Sbjct: 678 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDQWLIEPAREAAAVLLEQYPHV 737 Query: 674 TS 675 + Sbjct: 738 VT 739 >gi|74316487|ref|YP_314227.1| ATP-dependent DNA helicase RecG [Thiobacillus denitrificans ATCC 25259] gi|74055982|gb|AAZ96422.1| ATP-dependent DNA helicase RecG [Thiobacillus denitrificans ATCC 25259] Length = 678 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 242/649 (37%), Positives = 360/649 (55%), Gaps = 25/649 (3%) Query: 40 RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99 R DL+ + P + D I E+ + + + + + + RR +++ D +G Sbjct: 26 RDSDLILHLPLRWEDETRITPIGELLPGQTAQVQACVRE-AKVTYRPRRMLTLIVEDDSG 84 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL---I 156 + + F + LK F G + G+++ + MVHP + D + PL + Sbjct: 85 VLGVRFLHFYPSHLK-AFQAGARFRFNGEVRGGFLGLEMVHPRF---AKADDDTPLPAGL 140 Query: 157 EAVYSLPTGLSVDLFKKIIVEALS-----RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHN 211 VY GL +K+I AL+ LP PEW E+ + + ++H Sbjct: 141 TPVYPTTAGLGQASLRKLIERALAAPIDETLP--PEWREE-----LGLAELESSIRLLHQ 193 Query: 212 PRKA---KDFEWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267 P E + PA +RLA+DELLA Q++L R+ + +P+ ++ + Sbjct: 194 PPPGCAQHALESRAHPAWQRLAFDELLAQQLSLATSRQAREARTTLPLPHRRRLTAAFVD 253 Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + F T +Q A ++I D++ + M R+LQGDVGSGKT+VA +A AVE G QA M Sbjct: 254 TLAFELTAAQARAWQEISTDLAAPHPMRRLLQGDVGSGKTVVAALACLQAVENGMQAAFM 313 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 AP ILA+QHY + + ++G+ +A R A IA G+A + GTHALFQ Sbjct: 314 APTEILAEQHYRKLAPTLAALGVRSGWVSGSQRRAEREAAWRAIAAGEADLAFGTHALFQ 373 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 ++ + +L LV+VDEQHRFGV QRL L K T PH L+M+ATPIPRTL ++ D+D+S Sbjct: 374 EAGNFCRLGLVVVDEQHRFGVGQRLALMGKGTEPHQLMMSATPIPRTLAMSFFADLDVSA 433 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 I E P GR PI T ++ R DEV+ R++ G +AYW+CP IEE ++ ++ + + Sbjct: 434 IDELPPGRTPIVTKLVSAARRDEVLARVRDACVGGGQAYWVCPLIEESEKLQLQTAEDTY 493 Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 +L E I ++HGR+ DK+SVM +F++ LL+ATTVIEVG+DV +A++++IE Sbjct: 494 GTLVEQLPGLRIGLVHGRLKAEDKQSVMAAFQSHEIDLLVATTVIEVGVDVPNAALMVIE 553 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626 +AE GLAQLHQLRGRVGRG S C+LLY PLS+ + RL V+ DGF IA +DL Sbjct: 554 HAERMGLAQLHQLRGRVGRGARESVCVLLYETPLSELARARLKVIFEHSDGFEIARQDLL 613 Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 R GE+LG +QSG+P A E +LLE AR A+ L + P++ + Sbjct: 614 LRGPGELLGQRQSGLPMLRFADLERDVALLERARDLAQRCLRERPEVAA 662 >gi|328887724|emb|CAJ69448.2| ATP-dependent DNA helicase RecG [Clostridium difficile] Length = 686 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 242/636 (38%), Positives = 374/636 (58%), Gaps = 12/636 (1%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEI 101 DLL+Y P F DR+ KI+++ + VTI IS ++F ++ KI + D TG Sbjct: 32 DLLYYFPRQFEDRNNLKKIAQLEDGEKVTIKAVISSINTFSPKEGMTLTKIDVKDETGSA 91 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161 L+FF + +KN F G I V GK+KK N + + + + N VY Sbjct: 92 KLVFFNK--SYIKNTFRPGDSILVFGKVKKKFNNLELTSCELEYLTNSPKNTCRFMPVYQ 149 Query: 162 LPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220 L G++ II L + ++ E++ + +++K SI A IH+P + + Sbjct: 150 LTYGVTNKEIMSIIRTVLEDKELIIQEYMPQRIIEKYRLCSIDFAVRNIHSPSSKESLKI 209 Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280 A R+ ++ELL Q+ L + + KE GI K +KI+ +PF TK+Q A Sbjct: 210 ---ALYRIVFEELLILQLGLFVFKSGRNKEDGIKFET-SKDLKKIISALPFKLTKAQNRA 265 Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340 + +I+QDM+ + M R++QGDVGSGKT+VAL+A+A V G Q +MAP ILA QHY Sbjct: 266 LDEIIQDMNLEKIMNRLVQGDVGSGKTVVALLALANCVLNGYQGALMAPTEILAGQHYIS 325 Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400 + + ++ I V ++ G++ + + LE+I + + I+IGTHAL +D +++ + LVI Sbjct: 326 LTESLKDFGINVGLLIGSLTKKQKDTVLEQIKNNEIDILIGTHALIEDKVEFNNIGLVIT 385 Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460 DEQHRFGV QR KL+ K P +L+MTATPIPRTL L GD+DIS I E P GR+PI+T Sbjct: 386 DEQHRFGVMQRSKLSLKGANPDILVMTATPIPRTLALILYGDLDISIIDELPPGRQPIET 445 Query: 461 VIIPINRIDEVIERL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-S 517 + I ++ D L + + G++ Y +CP +EE + +S VE L E+F Sbjct: 446 IAIEKSKRDRAYNNLVRREVESGRQVYIVCPLVEESEAIEAKSAVELVEELRAEYFHDLR 505 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 + ++HG+M +K+ VM FK+ +L++T VIEVG++V +A+++IIENAE FGLAQLH Sbjct: 506 LGLLHGKMKSSEKDEVMRLFKDKEIDILVSTIVIEVGVNVPNATLMIIENAERFGLAQLH 565 Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637 QLRGRVGRG S C+L+Y + R+++++ T DGF I+E+DL+ R GE G + Sbjct: 566 QLRGRVGRGSHKSYCVLIYDSK-TDVCRQRMAIMEETNDGFKISEKDLEIRGPGEFFGTR 624 Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 Q G+P+ +A H +L++A+++A++IL +D +L Sbjct: 625 QHGLPELKVANLFKHIKILKLAQQEARYILGEDNNL 660 >gi|303230783|ref|ZP_07317530.1| ATP-dependent DNA helicase RecG [Veillonella atypica ACS-049-V-Sch6] gi|302514543|gb|EFL56538.1| ATP-dependent DNA helicase RecG [Veillonella atypica ACS-049-V-Sch6] Length = 680 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 238/630 (37%), Positives = 362/630 (57%), Gaps = 23/630 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP----YKILLNDGT 98 +LL Y P S+ DR KI I E G + S ++ RP ++++ DGT Sbjct: 29 NLLAYFPRSYEDRR---KIYSIKELETGITAGVVGTVVSITEKRPRPRLSILEVIITDGT 85 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 G + ++ F + + KN + +G+++ GK + + M P + I Sbjct: 86 GPMKIVLFNQGYK--KNFYKKGQRLYAYGKAEFQYGSMQMNSPQIENLGPDAMPDTGIVP 143 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 +Y L G+S + + I + E + +++ + +AF +H P ++ Sbjct: 144 IYPLVDGVSQYVVRASIRNWFEAHHTMDEILPTEIMNYHASMKRYDAFKEMHFPSSSESH 203 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 E AR +LAY+EL Q L L+R + + +G + +G + ++ N+PF T QE Sbjct: 204 E---KARYQLAYEELFIMQSGLALLRNKEQCYVGPKMEPDGTLMEQCRTNLPFQLTGDQE 260 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 A+ +I QDM + M R+LQGDVGSGKT+VA +++ AVE G QAVIMAP ILA QHY Sbjct: 261 RAVTEISQDMQDERPMQRLLQGDVGSGKTVVATLSLVKAVENGYQAVIMAPTEILATQHY 320 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I ++ + I + ++TG+ P+ + K E +A+G +IIGTHAL QD +Q+ L LV Sbjct: 321 EGITEFCKTLPINIALLTGSTPKKEKDKIYEELANGTIQLIIGTHALIQDKVQFKNLGLV 380 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DEQHRFGV QR L K PHVL+MTATPIPRT+ L+ GD+ +S I E P GRKP+ Sbjct: 381 IIDEQHRFGVNQRAALQHKGVYPHVLIMTATPIPRTMTLSVYGDLAVSLIKEMPPGRKPV 440 Query: 459 KTVIIPINRIDEVIERLKVV----LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 KT ++ ERL+V ++ G + Y +CP +EE ++ + ++ E F L ++F Sbjct: 441 KTYVVD----SSYKERLRVFFGKEMAAGHQVYVVCPLVEESEKLDLQAAEELFLELKDYF 496 Query: 515 TSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 S + ++HGRM+ +K+ VM +F NG +LL++TTVIEVG++V +A+I+ IE AE FG Sbjct: 497 YKSFEVGLVHGRMNPKEKDEVMQAFHNGRIQLLVSTTVIEVGVNVPNATIMCIEGAERFG 556 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 L+QLHQLRGRVGRG+ + CIL+ S RL ++++T+DGF +AE+DL R G+ Sbjct: 557 LSQLHQLRGRVGRGDIQAYCILVSDSK-GDVSQERLRLMESTQDGFELAEQDLLLRGSGQ 615 Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKD 662 + G+ QSG+P +A +L AR D Sbjct: 616 LFGLAQSGLPDLRVANIIKDIDILVAARND 645 >gi|226198358|ref|ZP_03793927.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei Pakistan 9] gi|225929541|gb|EEH25559.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei Pakistan 9] Length = 903 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 246/662 (37%), Positives = 370/662 (55%), Gaps = 29/662 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D + E+ G + + +R+ L +D Sbjct: 230 TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 289 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 E+ L F +K + G+++ V G ++ + +VHP + D + PL +A Sbjct: 290 AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQA 345 Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 VY G+S +K I AL+R P+ LP I + LQ P +A+A ++H+P Sbjct: 346 LTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHHP 405 Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IAQ 263 D + T PA R+ +DELLA Q++L ++ + + + ++ Sbjct: 406 GVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRARDDGAALSA 465 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 + +PF+ T +QE + +I D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q Sbjct: 466 CLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQ 525 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 A +MAP ILA+QH ++ + + + V + G++ +R ALE A G A ++IGTH Sbjct: 526 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTH 585 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRT 434 A+ QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRT Sbjct: 586 AMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRT 645 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L +T D+D+S I E P GR PI T ++ R DEVI R++ G++ YW+CP IEE Sbjct: 646 LAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEE 705 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ VE + +L + ++HGR++ +K +VMD+F +LL+ATTVIEV Sbjct: 706 SETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEV 765 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+L+Y PLS RL ++ Sbjct: 766 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRE 825 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 T DGF IA DL+ R GE LG +QSG A E L+E AR A ++ P++ Sbjct: 826 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEV 885 Query: 674 TS 675 + Sbjct: 886 VA 887 >gi|210615605|ref|ZP_03290678.1| hypothetical protein CLONEX_02896 [Clostridium nexile DSM 1787] gi|210150209|gb|EEA81218.1| hypothetical protein CLONEX_02896 [Clostridium nexile DSM 1787] Length = 705 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 249/687 (36%), Positives = 395/687 (57%), Gaps = 24/687 (3%) Query: 11 APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70 + +S+ +G+G+K K+ N DLL + P + I+EI E R V Sbjct: 24 STISSLKGIGEKTEKLFQKL------NIFTIGDLLRHFPKGYEVYEEATPIAEIDEGRTV 77 Query: 71 TITGYISQHSSFQLQKRRPYK---ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 T+TG I + Q+ R + I + D TG + +++F + L+N F +G +T+ G Sbjct: 78 TVTGAI--YGKVQVSGRTSMQVTTIYVKDITGTLRVVWF--RMPFLRNTFQKGGVVTLRG 133 Query: 128 KIKKLKNRIIMVHPHYIFHNSQ--DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 K+ + K ++M P IF+ S+ + ++ Y+L GL+ + K + +A+S L + Sbjct: 134 KVVRRKGTLLMEQPE-IFYPSELYEEKINTLQPNYALTAGLTNNAVVKAMKQAISYLDLK 192 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 +++ D+ + A IH P ++F ARERL ++E L +AL M++ Sbjct: 193 QDFLPPDVRTRYHLAEYNYAIQGIHFPVDKEEF---YTARERLVFEEFLVFILALRQMKE 249 Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + +K + ++ + +P+ T +Q+ ++I D++ + M R++QGDVGSG Sbjct: 250 KNEKSKNTFSFAIAEPVEQFMHKLPYELTGAQQKVWEEIKADLNGAHVMSRLVQGDVGSG 309 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQAH 363 KT++AL+ + A G Q +MAP +LA+QH+E I + + QI VE +TG+M Sbjct: 310 KTIIALLGLLLAAVNGYQGALMAPTEVLAKQHFESICEMLEEHQIPVCVEFLTGSMTAKE 369 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 +R A ERIA G+A II+GTHAL Q+ ++Y+ L LV+ DEQHRFGV+QR KL +K PH+ Sbjct: 370 KRMAYERIASGEAQIIVGTHALIQEKVKYHSLALVVTDEQHRFGVKQREKLAEKGNTPHI 429 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+M+ATPIPRTL + GD+DIS I E PA R PIK ++ N + +K + EG+ Sbjct: 430 LVMSATPIPRTLAIILYGDLDISVIDELPANRLPIKNCVVDTNYRKTAYQFMKKQVLEGR 489 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGT 541 + Y ICP IEE + +V++ +L E +I A +HG+M +K+ +M+ F Sbjct: 490 QCYVICPMIEENENLEAENVIDYAKTLQEEMGDNIQVAYLHGKMKQSEKDVIMEQFGKRE 549 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTVIEVGI+V +A+++++ENAE FGLAQLHQLRGRVGRG+ S CI + S Sbjct: 550 IQILVSTTVIEVGINVPNATVMMVENAERFGLAQLHQLRGRVGRGKYQSYCIFM-SASKS 608 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 K + RLS+L + DGF IA EDLK R G++ GI+QSG+ F + +L+ A + Sbjct: 609 KETKERLSILNKSNDGFFIASEDLKLRGPGDLFGIRQSGILDFKLGDVFQDAKILQRASE 668 Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLY 688 A+ ++++D +L Q+IR L Y Sbjct: 669 AAEQLISEDENLEKQNHQNIREYLQKY 695 >gi|78065288|ref|YP_368057.1| ATP-dependent DNA helicase RecG [Burkholderia sp. 383] gi|77966033|gb|ABB07413.1| ATP-dependent DNA helicase RecG [Burkholderia sp. 383] Length = 777 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 240/661 (36%), Positives = 368/661 (55%), Gaps = 27/661 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D I E+ I G + + + RR + + D Sbjct: 104 TRSIDLVLHLPMRYEDETTLTPIGELLPGGIAQAEGVVFDNE-VAYRPRRQLVVKIQDDD 162 Query: 99 GE-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LI 156 GE + L F +K + G+++ V G ++ + MVHP + D P ++ Sbjct: 163 GEHLVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGMEMVHPAVRVVEA-DAPLPQVL 220 Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213 VY G+S +K I A+ R P+ LP I++D L+ P++ +A I+H+PR Sbjct: 221 TPVYPSTAGVSQAYLRKAIENAVERTPLPELLPPEIQRDYLKPLDVPTLEQAVRILHHPR 280 Query: 214 KAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI-----NVEGKIAQK 264 D + + PA R+ ++ELLA Q++L ++ + + + + Sbjct: 281 VDSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAAPAMPRRTATDADSLTTR 340 Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324 + +PF+ T +Q + +I D++ + M R+LQGDVGSGKT+VA +A A++AG QA Sbjct: 341 LYGALPFTLTGAQARVVDEIANDLTLAHPMQRLLQGDVGSGKTVVAALAATQAIDAGYQA 400 Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384 +MAP ILA+QH ++ + + + V + G++ +R A+E A G A ++IGTHA Sbjct: 401 ALMAPTEILAEQHARKLRAWLEPLGVTVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTHA 460 Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTL 435 + QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRTL Sbjct: 461 IIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAANGARDFQPHQLMMSATPIPRTL 520 Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495 +T D+++S I E P GR P+ T ++ R +EVI R++ G++ YW+CP IEE Sbjct: 521 AMTYYADLEVSTIDELPPGRTPVLTRLVGDARREEVIARVREAALTGRQVYWVCPLIEES 580 Query: 496 KESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554 + ++ VE + +L + ++HGR+S DK +VM++F +LL+ATTVIEVG Sbjct: 581 ETLQLQTAVETYETLATALPELKVGLVHGRLSPADKAAVMEAFTRNDVQLLVATTVIEVG 640 Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614 +DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+LLY PLS RL ++ T Sbjct: 641 VDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYTGPLSLTGRERLKTMRET 700 Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 DGF IA DL+ R GE LG +QSG A E L++ AR A ++ P++ Sbjct: 701 TDGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLIDPARDAATRLIAAYPEIV 760 Query: 675 S 675 + Sbjct: 761 T 761 >gi|317500351|ref|ZP_07958576.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium 8_1_57FAA] gi|331089640|ref|ZP_08338539.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium 3_1_46FAA] gi|316898292|gb|EFV20338.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium 8_1_57FAA] gi|330405008|gb|EGG84546.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium 3_1_46FAA] Length = 685 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 244/673 (36%), Positives = 383/673 (56%), Gaps = 30/673 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 +S+ +G+G+K KI DL+ Y+P F + E+ E ++ T+ Sbjct: 6 ISSLKGIGEKTEKLFQKI------GVDTVEDLIRYYPKGFEIFEDPISVGEVEEGKVCTV 59 Query: 73 TGYI------SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 G + S +S Q+ + L D TG + ++++ + L+N +G + + Sbjct: 60 AGMVFGRIQVSTNSKMQITT-----LHLKDVTGTLKVIWY--RMPFLRNTLAKGGTLVLR 112 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 G+I + KN I+M HP + +S+ + ++ VYSL GL+ + K + +ALS L Sbjct: 113 GRIVRKKNEIVMEHPEIFYPSSKYEEKRDTMQPVYSLTAGLTNNSVIKAVKQALSFLDDE 172 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 + + ++L K SFP EA +H PR+ +DF AR+R ++E L ++L M++ Sbjct: 173 QDILPEELRLKYSFPKYEEAIYAMHFPREKEDF---VRARKRFVFEEFLLFILSLRRMKE 229 Query: 246 QFKKEIGIPINVEGKIA-QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 + P + + ++ L +P+ T +QE +I DM +N M R++QGDVGS Sbjct: 230 SENRSEN-PFHFADRPEIEQFLGALPYHLTNAQEKVWTEIKSDMQSENVMSRLVQGDVGS 288 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV--EIITGNMPQA 362 GKT++A +A+ + G Q +MAP +LA QHYE I + + +I + E++TG+M + Sbjct: 289 GKTIIAFLALLLSALNGYQGALMAPTEVLAVQHYENISEMLEKYKIPLQAELLTGSMTMS 348 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 ++KA RI G+A IIIGTHAL Q+ + Y L LV+ DEQHRFGV+QR L QK PH Sbjct: 349 QKKKAYARIESGEAAIIIGTHALIQEKVLYRNLALVVTDEQHRFGVRQRETLAQKGKTPH 408 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 +L+M+ATPIPRTL + GD+DIS I E P R PIK ++ ++ ++ + EG Sbjct: 409 ILVMSATPIPRTLAIILYGDLDISIINEMPKNRLPIKNCVVNTEYREKAYRFMRKQVLEG 468 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNG 540 ++ Y ICP +EE + + +V++ L E I + +HG+M +K+ +M +F Sbjct: 469 RQCYVICPMVEESESLDAENVIDYSQMLAEELGDGIHVGCLHGKMKQKEKDEIMSAFGKN 528 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L++TTV+EVGIDV +A++++IENAE FGLAQLHQLRGRVGRG S CI + Sbjct: 529 EIQILVSTTVVEVGIDVPNATVMLIENAERFGLAQLHQLRGRVGRGGYQSYCIFM-SASK 587 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S + RL +L + DGF IA EDL+ R G++ GI+QSG+ F IA +L+IA Sbjct: 588 SDETKERLEILNRSNDGFFIAGEDLRLRGPGDLFGIRQSGILDFKIADVFQDAEVLKIAG 647 Query: 661 KDAKHILTQDPDL 673 ++A IL +DP+L Sbjct: 648 EEANKILKRDPEL 660 >gi|21244116|ref|NP_643698.1| ATP-dependent DNA helicase RecG [Xanthomonas axonopodis pv. citri str. 306] gi|21109744|gb|AAM38234.1| ATP-dependent DNA helicase [Xanthomonas axonopodis pv. citri str. 306] Length = 717 Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust. Identities = 255/708 (36%), Positives = 386/708 (54%), Gaps = 52/708 (7%) Query: 3 PSFLNPLFAPLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 PS A LS+ GVG K + F ++ I DL + P + DR I Sbjct: 9 PSLAVAGQARLSSLPGVGPKVADRFAARGILS-------VQDLWLHLPLRYEDRTRLTTI 61 Query: 62 SEISEERIVTITGYISQ-HSSFQLQKRRP-YKILLNDGT-GEITLLFFYRKTEMLKNVFF 118 +++ I G + F+ RP ++ ++D + G + L FF+ + + F Sbjct: 62 AQLQGGVPAQIEGRVDAVERGFRF---RPVLRVAVSDASYGTLVLRFFHFRAAQVAQ-FA 117 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIV 176 G ++ V G K ++ +VHP Y + +D ++ VY + G+ +K+I Sbjct: 118 VGTRVRVFGTPKPGQHGWEIVHPSYRVLAPDEDAGLGDSLDPVYPVLEGVGPATLRKLIG 177 Query: 177 EALSRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPAR 225 +AL RLP + P W LQ + PS+ A +H P D PA+ Sbjct: 178 QALERLPPESALELLPPHW-----LQDERLPSLRAALLTMHRPPVGTDPQQLLAGGHPAQ 232 Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285 +RLA +ELLA Q++L R ++ + G + Q++ + +PF T +Q+ + I Sbjct: 233 QRLAIEELLAHQLSLRRQRIALQRLHAPSLPGNGTLVQQLRKALPFQLTGAQQRVFEQIA 292 Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345 D++Q + MLR++QGDVGSGKT+VA +A AVE G Q + AP +LA+QH ++ + Sbjct: 293 HDLAQPSPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLTNLRGWL 352 Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405 + I + + G + R A+ +A GQA +++GTHAL Q+++ ++ L L I+DEQHR Sbjct: 353 EPLGIRIVWLAGKVTGKARAAAMAEVASGQAQVVVGTHALMQEAVVFHDLALAIIDEQHR 412 Query: 406 FGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461 FGV QRL L K A PH L+MTATPIPRTL +++ D+D+S I E P GR P++T+ Sbjct: 413 FGVHQRLALRDKGAAAGSVPHQLVMTATPIPRTLAMSAYADLDVSAIDELPPGRTPVQTI 472 Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES--------------NFRSVVERF 507 ++ R E++ER++ +EG++AYW+C IEE +E ++ F Sbjct: 473 VLSAERRPELVERIRAACAEGRQAYWVCTLIEESEEPGKGAQGQQGGPPRIEAQAAEVTF 532 Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 +L +A++HGRM +K+ M FK G LL+ATTVIEVG+DV +AS++IIE Sbjct: 533 ETLSAQLPGVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIE 592 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626 NAE GLAQLHQLRGRVGRG SSC+LLY PLS + RL ++ T DGF+IAE+DL+ Sbjct: 593 NAERLGLAQLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLQ 652 Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 R GE+LG +Q+G+ F IA LL + A+ +L + PD+ Sbjct: 653 LRGPGELLGTRQTGLASFRIADLARDAGLLPRVQLLAERLLDEAPDIA 700 >gi|107021800|ref|YP_620127.1| ATP-dependent DNA helicase RecG [Burkholderia cenocepacia AU 1054] gi|116688747|ref|YP_834370.1| ATP-dependent DNA helicase RecG [Burkholderia cenocepacia HI2424] gi|105891989|gb|ABF75154.1| ATP-dependent DNA helicase RecG [Burkholderia cenocepacia AU 1054] gi|116646836|gb|ABK07477.1| ATP-dependent DNA helicase RecG [Burkholderia cenocepacia HI2424] Length = 771 Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust. Identities = 239/660 (36%), Positives = 366/660 (55%), Gaps = 25/660 (3%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D I E+ I G + + + RR + + D Sbjct: 98 TRSIDLVLHLPMRYEDETTLTPIGELLPGGIAQTEGVVFDNE-VAYRPRRQLVVKIQDDD 156 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIE 157 GE +L F G+++ V G ++ + MVHP + D P ++ Sbjct: 157 GEQLVLRFLNFYGSQVKQMAVGQRLRVRGDVRGGFFGMEMVHPAVRVVEA-DAPLPQVLT 215 Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 VY G+S +K I A+ R P+ LP I++D L+ P++ +A I+H+PR Sbjct: 216 PVYPSTAGVSQAYLRKAIENAVERTPLPELLPPEIQRDYLKPLDVPTLEQAVRILHHPRV 275 Query: 215 AKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE-----GKIAQKI 265 D + + PA R+ ++ELLA Q++L ++ + + + ++ Sbjct: 276 DSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAAPAMPRRAATDTDALTTRL 335 Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 +PF+ T +Q + +I D++ + M R+LQGDVGSGKT+VA +A A++AG QA Sbjct: 336 YAALPFTLTGAQARVVDEIAHDLTLAHPMQRLLQGDVGSGKTVVAALAATQAIDAGYQAA 395 Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +MAP ILA+QH ++ + + + V + G++ +R A+E A G A ++IGTHA+ Sbjct: 396 LMAPTEILAEQHARKLRAWLEPLGVTVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTHAI 455 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLV 436 QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRTL Sbjct: 456 IQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAANGARDFQPHQLMMSATPIPRTLA 515 Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496 +T D+++S I E P GR P+ T ++ R +EVI R++ G++ YW+CP IEE + Sbjct: 516 MTYYADLEVSTIDELPPGRTPVLTRLVGDARREEVIARVREAALTGRQVYWVCPLIEESE 575 Query: 497 ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555 ++ VE + +L + ++HGR+S DK +VM++F +LL+ATTVIEVG+ Sbjct: 576 TLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMEAFTRNEVQLLVATTVIEVGV 635 Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615 DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+LLY PLS RL ++ T Sbjct: 636 DVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYTGPLSLTGRERLKTMRETT 695 Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 DGF IA DL+ R GE LG +QSG A E L++ AR+ A ++ P++ + Sbjct: 696 DGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLIDPAREAAARLIAAYPEVVT 755 >gi|71066639|ref|YP_265366.1| ATP-dependent DNA helicase RecG [Psychrobacter arcticus 273-4] gi|71039624|gb|AAZ19932.1| probable DNA helicase [Psychrobacter arcticus 273-4] Length = 808 Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust. Identities = 214/485 (44%), Positives = 302/485 (62%), Gaps = 15/485 (3%) Query: 201 SIAEAFNIIHNPRKAKDF-----------EWTSPARERLAYDELLAGQIALLLMRKQFKK 249 +I EA ++H P D T A +RL +EL A Q++LL R+Q K Sbjct: 302 TIFEALVLLHTPPTYTDTGRQYQLLTQLSARTHAACQRLIIEELTAHQLSLLYRRQQLHK 361 Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309 V+ +A K+ +PF T +Q+ ++DI DM+ MLR++QGDVG+GKTLV Sbjct: 362 HKAPKCAVQSPLADKLFGALPFDLTGAQKRVMQDITADMATSIPMLRLVQGDVGAGKTLV 421 Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369 A A A+++G Q +MAP ILA+QH K + + I V + G RR+ALE Sbjct: 422 AAGAAGYALDSGWQVAVMAPTEILAEQHLVNFKNWFEPLGIGVGWLAGKQTAKQRREALE 481 Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLM 426 ++ I++GTHALFQ+ +++ KL LVI+DEQHRFGV+QR+ LT K A PH L+M Sbjct: 482 AVSENTVQIVVGTHALFQEQVKFAKLGLVIIDEQHRFGVEQRMALTNKGVAGSTPHQLIM 541 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486 TATPIPRTL ++ GD+D S I E P GR PI TV I NR ++VIER+ V G++AY Sbjct: 542 TATPIPRTLAMSVYGDMDTSIIDELPPGRTPITTVTIDRNRRNDVIERIAVNCEAGRQAY 601 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 W+C +EE + ++ + L E I ++HG+M DK+++M +FK G LLI Sbjct: 602 WVCSLVEESSVLDAQAAEATYEDLSERLDIRIGLVHGKMKGADKQAIMQAFKAGQLDLLI 661 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 ATTVIEVG+DV +AS+++IENAE GL+QLHQLRGRVGRG S C+LLY PLS+ Sbjct: 662 ATTVIEVGVDVPNASLMVIENAERLGLSQLHQLRGRVGRGSTKSYCVLLYQKPLSETGTE 721 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666 RL+VL+++ DGF+IA++DL+ R GE+LG +Q+G + +A + L IA++ AKH+ Sbjct: 722 RLNVLRDSTDGFVIAQKDLELRGPGELLGKRQTGNVGYYLADLIRDEQLFAIAQRLAKHL 781 Query: 667 LTQDP 671 + DP Sbjct: 782 IA-DP 785 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 20/173 (11%) Query: 12 PLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70 P++ GVG K L+++ IN R DLL + P + DR I ++ + Sbjct: 36 PVTALAGVGPKVVEQLTQLGIN-------RIFDLLLHLPRDYEDRSRLVSIGDVGHGQAA 88 Query: 71 TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF--YRKTEMLKNVFFEGRKITVTGK 128 ITG + + R ++++D TG I+L FF YR L G + + G+ Sbjct: 89 LITGRVVHVDT----NRSGMTVIVDDDTGTISLRFFKVYRG---LAQTMSVGTHLQLFGE 141 Query: 129 IKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 +K + + HP Y I N VN L E +Y GL + + +I AL Sbjct: 142 VKVSRYGKQIHHPEYQIISSNEAIVNTGL-EPIYPSVKGLHQNKLRTLIKLAL 193 >gi|153814834|ref|ZP_01967502.1| hypothetical protein RUMTOR_01049 [Ruminococcus torques ATCC 27756] gi|145847865|gb|EDK24783.1| hypothetical protein RUMTOR_01049 [Ruminococcus torques ATCC 27756] Length = 687 Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust. Identities = 244/673 (36%), Positives = 383/673 (56%), Gaps = 30/673 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 +S+ +G+G+K KI DL+ Y+P F + E+ E ++ T+ Sbjct: 8 ISSLKGIGEKTEKLFQKI------GVDTVEDLIRYYPKGFEIFEDPISVGEVEEGKVCTV 61 Query: 73 TGYI------SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 G + S +S Q+ + L D TG + ++++ + L+N +G + + Sbjct: 62 AGMVFGRIQVSTNSKMQITT-----LHLKDVTGTLKVIWY--RMPFLRNTLAKGGTLVLR 114 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 G+I + KN I+M HP + +S+ + ++ VYSL GL+ + K + +ALS L Sbjct: 115 GRIVRKKNEIVMEHPEIFYPSSKYEEKRDTMQPVYSLTAGLTNNSVIKAVKQALSFLDDE 174 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 + + ++L K SFP EA +H PR+ +DF AR+R ++E L ++L M++ Sbjct: 175 QDILPEELRLKYSFPKYEEAIYAMHFPREKEDF---VRARKRFVFEEFLLFILSLRRMKE 231 Query: 246 QFKKEIGIPINVEGKIA-QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 + P + + ++ L +P+ T +QE +I DM +N M R++QGDVGS Sbjct: 232 SENRSEN-PFHFADRPEIEQFLGALPYHLTNAQEKVWTEIKSDMQSENVMSRLVQGDVGS 290 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV--EIITGNMPQA 362 GKT++A +A+ + G Q +MAP +LA QHYE I + + +I + E++TG+M + Sbjct: 291 GKTIIAFLALLLSALNGYQGALMAPTEVLAVQHYENISEMLEKYKIPLQAELLTGSMTMS 350 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 ++KA RI G+A IIIGTHAL Q+ + Y L LV+ DEQHRFGV+QR L QK PH Sbjct: 351 QKKKAYARIESGEAAIIIGTHALIQEKVLYRNLALVVTDEQHRFGVRQRETLAQKGKTPH 410 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 +L+M+ATPIPRTL + GD+DIS I E P R PIK ++ ++ ++ + EG Sbjct: 411 ILVMSATPIPRTLAIILYGDLDISIINEMPKNRLPIKNCVVNTEYREKAYRFMRKQVLEG 470 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNG 540 ++ Y ICP +EE + + +V++ L E I + +HG+M +K+ +M +F Sbjct: 471 RQCYVICPMVEESESLDAENVIDYSQMLAEELGDGIHVGCLHGKMKQKEKDEIMSAFGKN 530 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L++TTV+EVGIDV +A++++IENAE FGLAQLHQLRGRVGRG S CI + Sbjct: 531 EIQILVSTTVVEVGIDVPNATVMLIENAERFGLAQLHQLRGRVGRGGYQSYCIFM-SASK 589 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S + RL +L + DGF IA EDL+ R G++ GI+QSG+ F IA +L+IA Sbjct: 590 SDETKERLEILNRSNDGFFIAGEDLRLRGPGDLFGIRQSGILDFKIADVFQDAEVLKIAG 649 Query: 661 KDAKHILTQDPDL 673 ++A IL +DP+L Sbjct: 650 EEANKILKRDPEL 662 >gi|323524791|ref|YP_004226944.1| ATP-dependent DNA helicase RecG [Burkholderia sp. CCGE1001] gi|323381793|gb|ADX53884.1| ATP-dependent DNA helicase RecG [Burkholderia sp. CCGE1001] Length = 731 Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust. Identities = 244/627 (38%), Positives = 360/627 (57%), Gaps = 29/627 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D I + I G + + +R+ L +D Sbjct: 58 TRDIDLVLHLPMRYEDETSLTPIGHLLPGGIAQTEGVVFDNEIAYRPRRQLLVKLRDDAG 117 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 E+ L F +K + G ++ V G ++ + MVHP D + PL +A Sbjct: 118 DELVLRFLNFYGSQVKQMAI-GARLRVRGDVRGGFFGMEMVHPAV---RVVDEDTPLPQA 173 Query: 159 ---VYSLPTGLSVDLFKKIIVEALSR--LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 VY G++ +K I ALSR LP +LPE + ++ LQ PS+ +A +H+P Sbjct: 174 LTPVYPSTAGVTQAYLRKAIDNALSRTSLPELLPEAVAREWLQPLGVPSLMDAVRTLHHP 233 Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG--IP---INVEGKIAQ 263 D + T PA R+ ++ELLA Q++L ++ + +P + E + Sbjct: 234 GAQSDETALIDGTHPAWVRIKFEELLAQQMSLKRAHEERRTRAAPAMPRRKLGDEAALVA 293 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 ++L+ +PFS TK+QE +I D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q Sbjct: 294 RLLKALPFSLTKAQERVGGEIALDLTQPHPMQRLLQGDVGSGKTIVAALAAAQAIDAGYQ 353 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 A +MAP ILA+QH ++ + + + V + G++ +R A+E A G A ++IGTH Sbjct: 354 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTH 413 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---------APHVLLMTATPIPRT 434 A+ QD++++ +L LVIVDEQHRFGV QRL L KA PH L+M+ATPIPRT Sbjct: 414 AIIQDTVEFARLGLVIVDEQHRFGVAQRLALRAKALNAADGARDFQPHQLMMSATPIPRT 473 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L +T D+D+S I E P GR PI T ++ R +EVI R++ G++ YW+CP IEE Sbjct: 474 LAMTYYADLDVSTIDELPPGRTPILTKLVSDARREEVIGRVREAALTGRQVYWVCPLIEE 533 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ VE + +L + ++HGR++ +K +VMD+F +LL+ATTVIEV Sbjct: 534 SETLQLQTAVETYETLVAALPELKVGLVHGRLAPAEKAAVMDAFTRNEVQLLVATTVIEV 593 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+LLY PLS + RL ++ Sbjct: 594 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAASVCVLLYTGPLSMTARARLQTMRE 653 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSG 640 T DGF IA DL+ R GE LG +QSG Sbjct: 654 TTDGFEIARRDLEIRGPGEFLGARQSG 680 >gi|254431018|ref|ZP_05044721.1| ATP-dependent DNA helicase RecG [Cyanobium sp. PCC 7001] gi|197625471|gb|EDY38030.1| ATP-dependent DNA helicase RecG [Cyanobium sp. PCC 7001] Length = 807 Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust. Identities = 247/687 (35%), Positives = 382/687 (55%), Gaps = 38/687 (5%) Query: 11 APLSTFRGVGKKYSLFLSKIINCGNANETRFI--DLLFYHPSSFIDRHYRPKISEISEER 68 APL T RGVG + + L+++ F+ DL+ Y+P ++D +R +I+ + R Sbjct: 111 APLGTIRGVGPRTAARLAQL--------GLFVVRDLVHYYPRDYLDYAHRVRIAGLEVGR 162 Query: 69 IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFE------ 119 TI + + +F + IL L+D TG + + F+ + + Sbjct: 163 TATIVATVRRCQAFTSPRNPNLGILELQLSDPTGRLRVSRFFAGRRFASPAWLKAQQRQY 222 Query: 120 --GRKITVTGKIKKLKNRIIMVHP--HYIFHNSQDVNFPLIE---AVYSLPTGLSVDLFK 172 G + V+G +K+ P + V P+I VY L GL D + Sbjct: 223 PPGASVAVSGLVKETPYGPAFQDPLIEVLESPQATVRSPVIGRLLPVYGLTEGLGADRLR 282 Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232 + I L ++ + + + L AEA IH P D E R RL +DE Sbjct: 283 QAIAAVLPQVRQWDDPLPQALRHAHGLVGRAEALEQIHAP---ADQEQLQAGRHRLVFDE 339 Query: 233 LLAGQIALLLMRKQFKKEIGIPIN--VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290 L Q+ LL R++ + P+ V + + L +PF T +Q+ I +I D+++ Sbjct: 340 FLLLQLGLLQRRRELTRSPSPPLQSPVHDSLMARFLELLPFQLTPAQQRVIAEIRADLAR 399 Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350 + M R++QGDVGSGKT+VA+ A+ A++AG Q +MAP +LA+QHY+ + + + Sbjct: 400 EQPMARLVQGDVGSGKTVVAIAALLTAIDAGCQGALMAPTEVLAEQHYQKLCAWLPQLHV 459 Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410 ++TG+ P RR+ LE +A+GQ +++GTHAL +D + + +L LV+VDEQHRFGV Q Sbjct: 460 SCALLTGSTPARRRRRLLEDLANGQLQMLVGTHALLEDPVAFARLGLVVVDEQHRFGVAQ 519 Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470 R +L K PH+L MTATPIPRTL L+ GD+D+S+I P GR PI+T ++ DE Sbjct: 520 RDRLLAKGLQPHLLTMTATPIPRTLALSVHGDLDVSQIDGLPPGRTPIQTRLLRAGERDE 579 Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDI 528 + ++ +S G++AY + P +EE ++ + RS VE L E + ++HGRM+ Sbjct: 580 AYQLIRKEVSRGQRAYVVLPLVEESEKLDLRSAVEVHQQLSEAIFPDLCVGLLHGRMASA 639 Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588 DK++ + +F G ++L++TTV+EVG+DV +AS++++E+AE FGLAQLHQLRGRVGRG Sbjct: 640 DKQAALAAFAAGESQVLVSTTVVEVGVDVPEASVMVVEHAERFGLAQLHQLRGRVGRGAA 699 Query: 589 ISSCILLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646 S C+L+ H S+N+ RL VL + DGF IAE DL+ R G++LG +QSG+P + Sbjct: 700 ASHCLLVNH---SRNALARQRLDVLVRSSDGFEIAEMDLRLRGPGQVLGTRQSGLPDLAL 756 Query: 647 AQPELHDSLLEIARKDAKHILTQDPDL 673 A S+LE AR A+ IL DP+L Sbjct: 757 ASLTDDGSVLEQARAVAQEILAADPEL 783 >gi|167037717|ref|YP_001665295.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116132|ref|YP_004186291.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856551|gb|ABY94959.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929223|gb|ADV79908.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 681 Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust. Identities = 255/675 (37%), Positives = 392/675 (58%), Gaps = 24/675 (3%) Query: 8 PLFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 PL + +GVG K + L K+ IN DLLFY P + +R KI ++ Sbjct: 2 PLNLDIQYVKGVGPKRAKLLKKLGINTVE-------DLLFYFPKDYENRSDILKIEDLKV 54 Query: 67 ERIVTITGYISQH-SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 T GYI+ + K K+ + DGTG + L+++ +KN F G + + Sbjct: 55 GEKQTFRGYIAGSPREIKTSKVIITKVPVKDGTGAVELVWY--NQPYIKNNFKIGEEYII 112 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRL 182 GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ AL + Sbjct: 113 NGKLQFKYGQLIVENP--VLEKSEDFKLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYV 170 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 + E+ +++ L +K I A I+ P+ + A+ R Y EL Q+AL L Sbjct: 171 QEVEEFFDEEFLSEKGLMDIKNALININFPQNEA---YLEQAKYRFKYQELFLLQMALFL 227 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 M++ K++ GI E + L +PF T +Q +K+I+ DM+ M R++QGDV Sbjct: 228 MKRSVKEKKGIKF--EQADLKPFLMGLPFKLTLAQIKVLKEIIADMNSHKVMNRLVQGDV 285 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + +++G++ + Sbjct: 286 GSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISPS 345 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 ++++ LE+I +G I++GTHAL +D++ + L L I DEQHRFGV+QR LTQK P Sbjct: 346 NKKEVLEKIKNGDYDIVVGTHALIEDNVIFNNLGLCITDEQHRFGVRQRALLTQKGENPD 405 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 VL+MTATPIPRT L GD+DIS I + P GRK +KT +I + ++ E + +G Sbjct: 406 VLVMTATPIPRTFALILYGDLDISIIDQLPPGRKKVKTYVISSSVREKAYEFAMKEVKKG 465 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNG 540 ++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE VM+ F NG Sbjct: 466 RQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMADSDKEKVMEEFVNG 525 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L++TTVIEVG++V +A+++I+ENAE FGLAQLHQLRGRVGR E S CIL+ + Sbjct: 526 KIDILVSTTVIEVGVNVPNATVMIVENAERFGLAQLHQLRGRVGRSEFQSYCILISYSN- 584 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S + RL VL T DGF IAE+DL+ R GE LG++Q G+P+F IA +L+ + Sbjct: 585 SDIAKKRLGVLAQTSDGFKIAEKDLEIRGPGEFLGLRQHGLPEFKIANIFEDIDVLKRVQ 644 Query: 661 KDAKHILTQDPDLTS 675 KD + +L +DP L + Sbjct: 645 KDVEELLEKDPKLEN 659 >gi|172059700|ref|YP_001807352.1| ATP-dependent DNA helicase RecG [Burkholderia ambifaria MC40-6] gi|171992217|gb|ACB63136.1| ATP-dependent DNA helicase RecG [Burkholderia ambifaria MC40-6] Length = 792 Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust. Identities = 241/660 (36%), Positives = 365/660 (55%), Gaps = 25/660 (3%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D I E+ I G + + + RR + + D Sbjct: 119 TRSIDLVLHLPMRYEDETTLTPIGELLPGGIAQTEGVVFDNE-VAYRPRRQLVVKIQDDD 177 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIE 157 GE +L F G+++ V G ++ + MVHP + D P ++ Sbjct: 178 GEQLVLRFLNFYGSQVKQMAVGQRLRVRGDVRGGFFGMEMVHPAVRVVEA-DAPLPQVLT 236 Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 VY G+S +K I A+ R P+ LP IE+D L+ P++A+A I+H+P Sbjct: 237 PVYPSTAGVSQAYLRKAIENAVERTPLPELLPPEIERDYLKPLGVPTLAQAVRILHHPGV 296 Query: 215 AKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-----EGKIAQKI 265 D + + PA R+ ++ELLA Q++L ++ + + + ++ Sbjct: 297 DSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAAPAMPRRAATDADALTTRL 356 Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 +PF+ T +Q + +I D++ + M R+LQGDVGSGKT+VA +A A++AG QA Sbjct: 357 YAALPFTLTGAQARVVDEIAHDLTLPHPMQRLLQGDVGSGKTVVAALAATQAIDAGYQAA 416 Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +MAP ILA+QH ++ + + + V + G++ +R A+E A G A ++IGTHA+ Sbjct: 417 LMAPTEILAEQHARKLRAWLEPLGVSVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTHAI 476 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLV 436 QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRTL Sbjct: 477 IQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAANGARDFQPHQLMMSATPIPRTLA 536 Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496 +T D+++S I E P GR P+ T ++ R +EVI R++ G++ YW+CP IEE + Sbjct: 537 MTYYADLEVSTIDELPPGRTPVLTRLVGDARREEVIARVREAALTGRQVYWVCPLIEESE 596 Query: 497 ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555 ++ VE + +L + ++HGR+S DK +VM++F +LL+ATTVIEVG+ Sbjct: 597 TLQLQTAVETYETLAAALPELKVGLVHGRLSPGDKAAVMEAFTRNEVQLLVATTVIEVGV 656 Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615 DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+LLY PLS RL ++ T Sbjct: 657 DVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYTGPLSLTGRERLKTMRETT 716 Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 DGF IA DL+ R GE LG +QSG A E L++ AR A ++ PD+ + Sbjct: 717 DGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLIDPARDAAARLIAAYPDVVT 776 >gi|299536784|ref|ZP_07050092.1| ATP-dependent DNA helicase RecG [Lysinibacillus fusiformis ZC1] gi|298727796|gb|EFI68363.1| ATP-dependent DNA helicase RecG [Lysinibacillus fusiformis ZC1] Length = 681 Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust. Identities = 262/686 (38%), Positives = 383/686 (55%), Gaps = 34/686 (4%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64 + L+ P++ +GVGK+ + L + IN DLL+ P D + Sbjct: 1 MTELYGPVNELKGVGKETAAHLESLGINT-------IADLLWTFPHRHEDFRLKDLAQTP 53 Query: 65 SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRK 122 ER VT+ + + + R ++ + G + ++FF + LK G Sbjct: 54 HNER-VTVECKVEREPTILFLGRNKSRLQVTVLAGRHLVKVVFFNQG--YLKQKLVPGSI 110 Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQD-VNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 ITVTGK + R ++ F D V+F E VYSL + F+K + + L Sbjct: 111 ITVTGKWDR--GRQVINGTAVTFGPKTDQVDF---EPVYSLKGLIPQKRFRKYMRQVLDD 165 Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 VLPE I L + SI E IH P D E AR R AY+ELL Q+ + Sbjct: 166 CGEVLPETIPYYLQESYKLVSIREGLEGIHFPL---DAEHAKQARRRFAYEELLNFQLRI 222 Query: 241 LLMRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 +RK K E G I + + ++P+ T +Q+ + +I +D+ + +RM R+LQ Sbjct: 223 QALRKIRKDSEHGTVIQFNVHKLRDFIASLPYELTNAQKRVVNEICKDLKEPHRMNRLLQ 282 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT+VA I + AAV AG Q +MAP ILA+QH E +K++ Q + V +++G+ Sbjct: 283 GDVGSGKTVVAAIGLYAAVTAGFQGALMAPTEILAEQHLENLKEWFQPFGVRVALLSGST 342 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 RR L +A+G I+IGTHAL Q + ++KL VI DEQHRFGV+QR L K Sbjct: 343 KTKERRAILADLANGDLDIVIGTHALIQPDVIFHKLGFVITDEQHRFGVEQRRILRDKGE 402 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 P VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T + + V+ +L++ L Sbjct: 403 NPDVLFMTATPIPRTLAITAFGEMDVSMIDEMPAGRKQIETHWMKKEQFGSVLSKLELEL 462 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSF 537 + G++AY ICP IEE + + ++ VE + L +F + ++HGR+S +K++VM +F Sbjct: 463 AAGRQAYAICPLIEESDKLDVQNAVEIYEQLATYFKDRYHVGLMHGRLSADEKDAVMRAF 522 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 GT ++L++TTV+EVG++V +A+ +++ +AE FGLAQLHQLRGRVGRGE S CILL Sbjct: 523 SEGTIQVLVSTTVVEVGVNVPNATFMLVYDAERFGLAQLHQLRGRVGRGEHQSYCILLAD 582 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLL 656 P S R+ + T DGF +AE+DL+ R G+ G KQSG+P F +A +HD +L Sbjct: 583 PK-SDEGKERMQSMTETNDGFRLAEKDLELRGPGDFFGRKQSGLPDFKVADL-VHDYRIL 640 Query: 657 EIARKDAKHILT-----QDPDLTSVR 677 E ARKDA +L QD D +R Sbjct: 641 ETARKDASEMLETKAFWQDDDYQYLR 666 >gi|119487921|ref|ZP_01621418.1| ATP-dependent DNA helicase RecG [Lyngbya sp. PCC 8106] gi|119455497|gb|EAW36635.1| ATP-dependent DNA helicase RecG [Lyngbya sp. PCC 8106] Length = 833 Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust. Identities = 237/673 (35%), Positives = 384/673 (57%), Gaps = 29/673 (4%) Query: 27 LSKIINCGNANETRFI------DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80 L+K++ NA+ + DLL+Y+P ID + I ++ VT+ + + + Sbjct: 142 LAKVVGPRNADRLAKLGLYTVYDLLYYYPRDHIDYARQVAIRDLVPGETVTLVAKVKRCN 201 Query: 81 SFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEM--------LKNVFFEGRKITVTGKI 129 F + + IL L D TG + + F+ K + +G I +G + Sbjct: 202 CFSSPRNKKLTILDLTLTDNTGNLKISRFFAGPRFSNAGWQNKQKYNYPQGTIIAASGLV 261 Query: 130 KKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184 K K I + +P + + + VY L G+ DL +K ++ L Sbjct: 262 KSNKYGITLDNPELEVLDQAGGQIDSMKIGRVVPVYPLSEGVGADLVRKAVLSVLPTTSQ 321 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 L + + + LL + +A IH P D + + AR RL +DE Q+ LL R Sbjct: 322 LQDSLPQGLLDLYQLIGVQDAIQNIHFP---PDRDCLAAARRRLVFDEFFYLQLGLLQQR 378 Query: 245 KQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 + KK + GK+ Q+ +PF T +Q+ IK+IL D+ M R++QGDVG Sbjct: 379 QSQKKATTSAVLAPTGKLIQQFDEILPFEFTNAQQRVIKEILIDLQSSEPMNRLVQGDVG 438 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 +GKT++A++AM AA++AG QA +MAP +LA+QHY + + + VE++TG+ A Sbjct: 439 AGKTVLAVVAMLAAIQAGYQAALMAPTEVLAEQHYRKLVSWFNLMHLSVELLTGSTKAAK 498 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ +++ G+ +++GTHAL QD++++++L LV++DEQHRFGVQQR +L QK +PHV Sbjct: 499 RRQIHKQLETGELPVLVGTHALIQDTVKFHRLGLVVIDEQHRFGVQQRARLQQKGESPHV 558 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPRTL LT GD+D+S++ E P GR+PI+T I+ + E + ++ + +G+ Sbjct: 559 LTMTATPIPRTLALTLHGDLDVSQLDELPPGRQPIQTTILMGKQRKEAYDLMRREIVQGR 618 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541 + Y + P +EE ++ + RS VE L I ++HGR+S +K+ + F++ Sbjct: 619 QVYVVLPLVEESEKLDVRSAVEEHQKLQTKIFPEFQIGLLHGRLSSAEKDEAISQFRDQK 678 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTV+EVG+DV +A++++IENAE FGL+QLHQLRGRVGRGE S C+L+ + Sbjct: 679 TQILVSTTVVEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGEHKSFCLLMAGSS-T 737 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 + RL VL+ ++DGF IAE D++ R G++LG +QSG+P F++A +LE+AR Sbjct: 738 PEAKERLQVLEQSQDGFFIAEMDMQLRGPGQVLGTRQSGLPDFVLASLVEDREVLELARD 797 Query: 662 DAKHILTQDPDLT 674 A+ ++ +D L Sbjct: 798 AAQKVIEKDDTLN 810 >gi|238897837|ref|YP_002923516.1| DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465594|gb|ACQ67368.1| DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 697 Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust. Identities = 239/650 (36%), Positives = 370/650 (56%), Gaps = 24/650 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS GV + LS+I N N DLL + P + DR + I + Sbjct: 14 PLSDLSGVSGNHLAKLSRI-NLYNVQ-----DLLLHLPLRYEDRTHLYSIENLEHGLFGA 67 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G I Q + +RR + DGTG + L FF+ + ++N G+ + V G++K+ Sbjct: 68 VQGRIVQ-AEMSSGRRRILTCQIEDGTGALILRFFHF-NKGIQNALSVGKDVMVYGEVKE 125 Query: 132 LKNRIIMVHPHYIFH--NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187 + M+HP + N++ + ++ +YS GLS K++ +AL+ L P E Sbjct: 126 GYYGLEMIHPKFKIQGKNNETLLSTVLTPIYSTTEGLSQSTLNKLVGQALALLEATPIAE 185 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLM 243 + L+ S S+ EA +H P K E W PA RL ++EL+A ++LL Sbjct: 186 ILPSQLM--TSLISLPEAIKTLHRPPKNISLEKLTQWRHPACIRLIFEELMAYHLSLLTA 243 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 R+ K +P + + + + L ++ F T +Q+ + +I +D+++ M+R++QGDVG Sbjct: 244 RENAKHHRALPFSKKEALKKSFLSSLTFKMTSAQQRVVSEIERDLARSTPMMRLIQGDVG 303 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKTLVA +A + G Q +MAP ILA+QH +++ + + G Sbjct: 304 SGKTLVAALAALQVIAHGKQVALMAPTEILAEQHLTQFQQWFTPLGLSAGCLLGKQKGKL 363 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420 R+ IA G+ ++IGT A+FQ +++ L LVI+DEQHRFGV QRL L KA Sbjct: 364 RQAQQNAIASGKILMVIGTQAIFQAHVKFSALALVIIDEQHRFGVHQRLALWSKAEKQGF 423 Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478 PH L+MTATPIPRTL +++ ++D S I E P+ R PI TV+IP R E+I+R+K + Sbjct: 424 HPHQLIMTATPIPRTLTMSAYANLDTSIIDELPSDRIPIHTVVIPDTRRIEIIDRIKEIC 483 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 LSEG++AYW+C I+E + ++ + L + + ++HGR+ + +K+ +M +F Sbjct: 484 LSEGRQAYWVCTLIDESELLEAQAAEVTYEELRKALPDIQMGLLHGRVKESEKDIIMQAF 543 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 G +LL+ATTVIEVGI+V +AS++IIEN E GLAQLHQLRGR+GRG S C+LLY Sbjct: 544 HRGEVQLLVATTVIEVGINVPNASLMIIENPERLGLAQLHQLRGRIGRGSIASYCVLLYK 603 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 PLS+ + RL +++ T DGF+IA++DL+ R G++LG +Q+G KF +A Sbjct: 604 TPLSQVAQQRLQIMRETHDGFVIAQKDLEIRGPGQLLGTRQTGSLKFKVA 653 >gi|119475372|ref|ZP_01615725.1| ATP-dependent DNA helicase RecG [marine gamma proteobacterium HTCC2143] gi|119451575|gb|EAW32808.1| ATP-dependent DNA helicase RecG [marine gamma proteobacterium HTCC2143] Length = 697 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 241/643 (37%), Positives = 358/643 (55%), Gaps = 16/643 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLLF+ P + DR I + I G + + + +RR L D TG +T Sbjct: 37 DLLFHLPLRYQDRTRITPIGALQPGIDAVIEGEV-RAADIAFGRRRSLVCRLQDHTGTVT 95 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVY 160 L FF+ +N G + G+ ++ + + M HP Y + + + N + +Y Sbjct: 96 LRFFHFSAAQKEN-LTNGVTLRCFGEARRGASGLEMYHPEYHAVDPLNPEPNEQSLTPIY 154 Query: 161 SLPTGLSVDLFKKIIVEALSRLP--VLPEWIEKDLLQKKSFP-SIAEAFNIIHNPRKAKD 217 GLS ++K+ ++AL+ L L EW+ + + P S+ A +H+P Sbjct: 155 PSSEGLSQQGWRKLALQALTMLQPNTLIEWLPQSFNIGDTLPISLEHALQYLHSPPIDAP 214 Query: 218 FEWTSPAR----ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 E + ++LA++ELLA ++LL +R Q K PI + Q+ L + F Sbjct: 215 VELLREGKHAYQQQLAFEELLAHNLSLLKLRNQTLKHGAPPIAKNSDLNQRFLHQLGFDF 274 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T++Q+ +I +DMS MLR++QGDVGSGKT+VA +A A +G Q IMAP IL Sbjct: 275 TRAQQRVAAEIDRDMSSAKPMLRLVQGDVGSGKTVVAALAALNAAASGYQVAIMAPTEIL 334 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QH ++ + + ++G + R++ L+ IA II+GTHALFQ + + Sbjct: 335 AEQHLANFTRWMTPLGLDIGWLSGKVKGKQRQQQLKAIAEHSVDIIVGTHALFQQEVVFA 394 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +L L ++DEQHRFGV QRL L +KA PH L+MTATPIPRTL +++ D+D S I Sbjct: 395 RLGLAVIDEQHRFGVHQRLALKEKANQDIGQPHQLIMTATPIPRTLAMSAYADLDTSVID 454 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 E P GR PI TV+I NR ++I+R++ EG++ YW+C IEE ++ + Sbjct: 455 ELPPGRTPISTVVIDNNRRSQIIDRVRNACVEGRQTYWVCTLIEESDTLEAQAAEDTCEQ 514 Query: 510 LHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 L +A+IHGRM +KES+M +FK LL+ATTVIEVG+DV +AS++IIENA Sbjct: 515 LKLALPDIKVALIHGRMKPSEKESIMAAFKANQIDLLVATTVIEVGVDVPNASLMIIENA 574 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628 E GL+QLHQLRGRVGRG S C+L+Y PL K RL +++ + DGF+IAE+DL+ R Sbjct: 575 ERLGLSQLHQLRGRVGRGPTASHCVLMYQAPLGKLGKQRLQIMRQSSDGFVIAEKDLELR 634 Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671 GE+LG +Q+G+ + IA E LLE A+ ++ P Sbjct: 635 GPGELLGTRQTGLMQLRIANLERDSHLLEAVNILARQMINDHP 677 >gi|325922280|ref|ZP_08184061.1| ATP-dependent DNA helicase RecG [Xanthomonas gardneri ATCC 19865] gi|325547233|gb|EGD18306.1| ATP-dependent DNA helicase RecG [Xanthomonas gardneri ATCC 19865] Length = 714 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 252/705 (35%), Positives = 387/705 (54%), Gaps = 49/705 (6%) Query: 3 PSFLNPLFAPLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 PS A LS+ GVG K + F ++ I DL + P + DR I Sbjct: 9 PSLAVAGQASLSSLPGVGPKVAEKFAARGIFT-------LQDLWLHLPLRYEDRTRLTTI 61 Query: 62 SEISEERIVTITGYI-SQHSSFQLQKRRP-YKILLNDGT-GEITLLFFYRKTEMLKNVFF 118 +++ I G + + F+ RP ++ ++D + G + L FF+ + + F Sbjct: 62 AQLQGGVPAQIEGRVDAMERGFRF---RPVLRVAVSDDSHGTLVLRFFHFRAAQVAQ-FA 117 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIV 176 G ++ V G K +N +VHP Y + +D ++ VY + G+ +K+I Sbjct: 118 PGTRVRVFGTPKPGQNGWEIVHPSYRVLAEGEDAGLGDSLDPVYPVLEGVGPATLRKLIG 177 Query: 177 EALSRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPAR 225 +AL RLP + P W LQ + PS+ A +H P D PA+ Sbjct: 178 QALERLPPEAALELLPPHW-----LQDEQLPSLRAALLTMHRPPVNTDPQQLLAGGHPAQ 232 Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285 +RLA +ELLA Q++L R ++ + G + Q++ +PF T +Q+ + I Sbjct: 233 QRLALEELLAHQLSLRRQRIALQRFRAPRLPGNGTLVQQLRAALPFQLTGAQQRVFEQIA 292 Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345 +D+++ + MLR++QGDVGSGKT+VA +A AVE G Q + AP +LA+QH ++ + Sbjct: 293 RDLAKPSPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLTNLRGWL 352 Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405 + + + + G + R A+ +A GQA +++GTHAL Q+++ ++ L L I+DEQHR Sbjct: 353 EPLGVRIVWLAGKVTGKARAAAMAEVASGQAQVVVGTHALMQEAVVFHDLALAIIDEQHR 412 Query: 406 FGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461 FGV QRL L K A PH L+MTATPIPRTL +++ D+D+S I E P GR P++T+ Sbjct: 413 FGVHQRLALRDKGAAAGSVPHQLVMTATPIPRTLAMSTYADLDVSAIDELPPGRTPVQTI 472 Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-----------NFRSVVERFNSL 510 ++ R +++ER++ +EG++AYW+C IEE +E ++ F +L Sbjct: 473 VLSAERRPDLVERIRAACAEGRQAYWVCTLIEESEEPGKGAPPGPPKIEAQAAEVTFEAL 532 Query: 511 HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 +A++HGRM +K+ M FK G LL+ATTVIEVG+DV +AS++IIENAE Sbjct: 533 SAQLPGVRVALVHGRMKPAEKQKAMLDFKQGHTDLLVATTVIEVGVDVPNASLMIIENAE 592 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629 GLAQLHQLRGRVGRG SSC+LLY PLS + RL ++ T DGF+IAE+DL+ R Sbjct: 593 RLGLAQLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLELRG 652 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 GE+LG +Q+G+ F IA LL + A+ +L + P++ Sbjct: 653 PGELLGTRQTGLASFRIADLARDAGLLPRVQVLAERLLAEAPEIA 697 >gi|300703084|ref|YP_003744686.1| ATP-dependent DNA helicase [Ralstonia solanacearum CFBP2957] gi|299070747|emb|CBJ42042.1| ATP-dependent DNA helicase [Ralstonia solanacearum CFBP2957] Length = 738 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 251/667 (37%), Positives = 372/667 (55%), Gaps = 44/667 (6%) Query: 40 RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ------HSSFQLQKRRPYKIL 93 R +DL+ + P + D + I+E TG+ +Q + L+ RR + Sbjct: 63 RDVDLVLHLPMRYEDET---TLLTIAEAIARANTGWAAQVEGAVTRNEVALRPRRQLVVY 119 Query: 94 LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153 + D +GE+ L F +K + EG ++ V G+++ MVHP + + D Sbjct: 120 IADDSGELVLRFLNFYGSQVKQMA-EGVRLRVRGEVRGGFFGAEMVHP-TVRPVAPDEPL 177 Query: 154 P-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP----SIAEAFNI 208 P + VY G++ +K I+ AL R P LPE + L++ P + AEA + Sbjct: 178 PDRLTPVYPSTAGVAQAYLRKAILNALGRTP-LPETLPDSLMRGPLAPLKLMAPAEAVRL 236 Query: 209 IHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPI----NVEG 259 +H P D E T PA R+ +DELLA Q++L R Q + P+ +G Sbjct: 237 LHQPTPDVDEHSLIERTHPAWLRIKFDELLAQQLSL--KRAQAARRTRSAPVLRAGGADG 294 Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319 +A + + +PF T +Q ++I D+++ M R+LQGDVGSGKT++A +A A++ Sbjct: 295 LLA-RFMAALPFKLTGAQARVWEEIRADLARPYPMQRLLQGDVGSGKTVIAALAACQAID 353 Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379 AG QA +MAP +LA+QHY + + + + + + G++ + + +A R+A G A ++ Sbjct: 354 AGRQAALMAPTELLAEQHYRKLSAWLEPLGVDIVWLAGSLKRKQKDEAAARVAAGAAQLV 413 Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------------PHVLLMT 427 IGTHAL QDS+ + +L L +VDEQHRFGV QRL L KA PH L+M+ Sbjct: 414 IGTHALIQDSVTFARLGLAVVDEQHRFGVAQRLALRGKAGGADAPVAETAQPVPHQLMMS 473 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T D+D+S I E P GR P+ T ++ R DEVIER+ EG++ YW Sbjct: 474 ATPIPRTLAMTYYADLDVSAIDELPPGRTPVVTRLVNDARRDEVIERIHAAAREGRQVYW 533 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 +CP IEE + ++ VE F +L + + ++HGR+ DK +VM +F G +L+ Sbjct: 534 VCPLIEESEALQLQTAVETFETLSQSLAGLKVGLVHGRLPSADKAAVMSAFAGGELHVLV 593 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S CILLY PLS + Sbjct: 594 ATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCILLYQAPLSPTAKQ 653 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKH 665 RL ++ T DGF IA DL R GE LG +QSG A HD+ ++E A+ A+ Sbjct: 654 RLQTMRETTDGFEIARRDLDIRGPGEFLGARQSGEAMLRFADLN-HDAWMVEFAQGAAEQ 712 Query: 666 ILTQDPD 672 +L + P+ Sbjct: 713 MLARFPE 719 >gi|124025499|ref|YP_001014615.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str. NATL1A] gi|123960567|gb|ABM75350.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str. NATL1A] Length = 846 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 259/701 (36%), Positives = 395/701 (56%), Gaps = 57/701 (8%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L + +S+ +GVG K + LS + DL+ Y P ++D I + + Sbjct: 147 LQSTISSVKGVGSKQAERLSTL------GLILIRDLINYFPRDYVDYSSLKTIDKTQAGQ 200 Query: 69 IVTITGYISQHSSFQLQKRRPYKIL---LNDGTG--EITLLFFYRKTEML------KNVF 117 VTI + + SSF+ K IL + D TG +IT F R++ + ++++ Sbjct: 201 NVTIVAKVRRCSSFKSPKNPNLSILELFIKDKTGGMKITRFFAGRRSSSIAYVKSQQSLY 260 Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE------------------AV 159 G + V+G +K+ K + +N PLIE V Sbjct: 261 PVGATVAVSGLVKESKY-------------GKSLNDPLIEIIDSPNGYLKSRTIGQILPV 307 Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 YSL G++ D F+ +I L + + + K+ L + P EAF IHNP +K Sbjct: 308 YSLTEGITADKFRDLIQSILYLTSNIKDPLPKETLNRLDLPYRKEAFFHIHNPANSKTL- 366 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQ---KILRNIPFSPTKS 276 + A+ R+ +DE L Q++LLL R KK +++E I K L +PFS T + Sbjct: 367 --AKAKRRIVFDEFLLLQLSLLLRRDLHKKSDSPQLSIEPNINSLVGKFLSILPFSLTNA 424 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q +K+I D+ + M R+LQGDVGSGKT++A+ A+ AV++G Q MAP +LA Q Sbjct: 425 QRRVLKEIESDIVKAEPMSRLLQGDVGSGKTVIAISALLTAVQSGWQGAFMAPTEVLASQ 484 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 H++ + K+ +I V+++TG+ P++ R++ L + +G I++GTHALF+D + + +L Sbjct: 485 HFQTLSKWIPQLEINVDLLTGSTPKSRRKQILTDLVNGSTKILVGTHALFEDPVVFERLG 544 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 LV+VDEQHRFGV+QR KL K PH+L MTATPIPRTL LT GD+D+S++ E P GR Sbjct: 545 LVVVDEQHRFGVKQRNKLLNKGLQPHLLTMTATPIPRTLALTLHGDLDVSQLDELPPGRT 604 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 PI T +I + ++ + +G + Y + P IEE ++ S V+ + L S Sbjct: 605 PINTQLISPKDKKYAYDLIRSEIKKGHQIYVVLPLIEESEKLELSSAVDVHHQLSTEIFS 664 Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 ++ ++HG+M ++K+ V+ +F N +L++TTVIEVG+DV +AS+++IE+++ FGLA Sbjct: 665 EFNVELLHGKMKSVEKQEVIQNFINKKSDILVSTTVIEVGVDVPNASVMLIEDSDRFGLA 724 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG S C LL H +K S RL VL N+ DGF I+E DL+ R G++L Sbjct: 725 QLHQLRGRVGRGATKSYC-LLSHQNKNKLSRQRLDVLVNSNDGFEISEIDLRFRGPGQVL 783 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 G KQSG+P F +A +LEIARK+A+ IL DP L++ Sbjct: 784 GTKQSGLPDFALASLADDADVLEIARKEARIILDSDPLLSN 824 >gi|86606655|ref|YP_475418.1| ATP-dependent DNA helicase RecG [Synechococcus sp. JA-3-3Ab] gi|86555197|gb|ABD00155.1| ATP-dependent DNA helicase RecG [Synechococcus sp. JA-3-3Ab] Length = 773 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 245/683 (35%), Positives = 399/683 (58%), Gaps = 33/683 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL +G+G K + L+++ + R D L+Y P +D R I + VT Sbjct: 79 PLQFLKGIGPKSAEKLAQL----GLHTVR--DALYYFPRDHLDYSRRVLIRQAKVGETVT 132 Query: 72 ITGYISQHSSFQLQKRRPYKILLN----DGTGEITLLFFYRKTEM--------LKNVFFE 119 + G + S F K P +LN D +G +TL FY + L+ + + Sbjct: 133 LVGTVKSCSCFTSPKN-PLLTILNLKIADKSGIVTLSRFYSGRQFAQRSWQAALERQYPK 191 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN---FPLIEAVYSLPTGLSVDLFKKIIV 176 G + +G +KK + + + +P + + I VY L G+ DL +K + Sbjct: 192 GAVVAASGLVKKGRLGLTLDNPQLEVLGGEGEDPERLGKILPVYPLSEGIPADLVRKAVQ 251 Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL ++ + + + L ++ + A IH P K E + AR RL +DE Sbjct: 252 LALPAAALVEDPLPEPLKRQLQLLDLPLALQQIHFP---KTQELLAQARRRLVFDEFFYL 308 Query: 237 QIALLLMRKQFKKEI-GIP--INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 Q++LL R++++ + +P G++ + + +PF T Q+ AI +IL D+ Sbjct: 309 QLSLLQRRQRYRAQAQAVPRYQPARGELLDRFYQILPFQLTAGQQRAIDEILADLRDPLP 368 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R+LQGDVGSGKT+VA+ A+ AA+++G QA +MAP +LA+QHY + ++ Q+ VE Sbjct: 369 MNRLLQGDVGSGKTVVAVAALLAAIQSGWQAALMAPTEVLAEQHYRKLVEWLSQLQVPVE 428 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++TG+ P A RR+ L ++ G+ +++GTHAL Q ++Q+ L LV++DEQHRFGV+QR Sbjct: 429 LLTGSTPPAKRREILRQLQTGELPLVVGTHALIQPAVQFRNLGLVVIDEQHRFGVEQRAA 488 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII-PINRIDEVI 472 L QK P VL MTATPIPRTL L GD+D+++I E P GRKP+ TV+ P +R+ +V+ Sbjct: 489 LQQKGDHPDVLTMTATPIPRTLTLALHGDLDVTQIDELPPGRKPVHTVVARPGDRL-QVV 547 Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDK 530 ++ +++G++AY + P IEE ++ + +S +E L E + ++HGR++ +K Sbjct: 548 RLMEREIAQGRQAYVVLPLIEESEKLDLKSAIEEHQRLQEKVFPQFRVGLLHGRLTSSEK 607 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 E+V+++F+ +L++TTV+EVG+DV +AS++++E+AE FGL+QLHQLRGRVGRG + + Sbjct: 608 EAVIEAFRRRELDILVSTTVVEVGVDVPNASVMLVEHAERFGLSQLHQLRGRVGRGSDQA 667 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 CIL+ S+ + RL VL+ + DGF IAE DL+ R GE++G +QSG+P F +A Sbjct: 668 YCILMTGSQ-SEEALRRLKVLEQSHDGFFIAEMDLRFRGPGEVMGTRQSGLPDFALASLM 726 Query: 651 LHDSLLEIARKDAKHILTQDPDL 673 +L++AR+ A+ ++ QDP+L Sbjct: 727 DDQEVLQLARQAAEQLIAQDPEL 749 >gi|170691379|ref|ZP_02882544.1| ATP-dependent DNA helicase RecG [Burkholderia graminis C4D1M] gi|170143584|gb|EDT11747.1| ATP-dependent DNA helicase RecG [Burkholderia graminis C4D1M] Length = 746 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 244/627 (38%), Positives = 359/627 (57%), Gaps = 29/627 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D I + I G + + +R+ L +D Sbjct: 73 TRDIDLVLHLPMRYEDETSLTPIGHLLPGGIAQTEGVVFDNEIAYRPRRQLLVKLRDDAG 132 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 E+ L F +K + G ++ V G ++ + MVHP D + PL +A Sbjct: 133 DELVLRFLNFYGSQVKQMAI-GARLRVRGDVRGGFFGMEMVHPAV---RVVDEDTPLPQA 188 Query: 159 ---VYSLPTGLSVDLFKKIIVEALSR--LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 VY G++ +K I ALSR LP +LPE + + LQ PS+ +A +H+P Sbjct: 189 LTPVYPSTAGVTQAYLRKSIDNALSRTSLPELLPEAVARQWLQPLGVPSLMDAVRTLHHP 248 Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLM--RKQFKKEIGIP---INVEGKIAQ 263 D + T PA R+ ++ELLA Q++L ++ + +P + E + Sbjct: 249 DAQSDETALIDGTHPAWVRIKFEELLAQQMSLKRAHDERRTRAAPAMPRRKLGDESALVA 308 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 ++L+ +PFS TK+QE +I D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q Sbjct: 309 RLLKALPFSLTKAQERVGGEIALDLTQPHPMQRLLQGDVGSGKTIVAALAAAQAIDAGYQ 368 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 A +MAP ILA+QH ++ + + + V + G++ +R A+E A G A ++IGTH Sbjct: 369 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTH 428 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---------APHVLLMTATPIPRT 434 A+ QD++++ +L LVIVDEQHRFGV QRL L KA PH L+M+ATPIPRT Sbjct: 429 AIIQDTVEFARLGLVIVDEQHRFGVAQRLALRAKAQNAADGARDFQPHQLMMSATPIPRT 488 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L +T D+D+S I E P GR PI T ++ R +EVI R++ G++ YW+CP IEE Sbjct: 489 LAMTYYADLDVSTIDELPPGRTPILTKLVSDARREEVIGRVREAALTGRQVYWVCPLIEE 548 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ VE + +L + ++HGR++ +K +VMD+F +LL+ATTVIEV Sbjct: 549 SETLQLQTAVETYETLVAALPELKVGLVHGRLAPAEKAAVMDAFTRNEVQLLVATTVIEV 608 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+LLY PLS + RL ++ Sbjct: 609 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAASVCVLLYTGPLSMTARARLQTMRE 668 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSG 640 T DGF IA DL+ R GE LG +QSG Sbjct: 669 TTDGFEIARRDLEIRGPGEFLGARQSG 695 >gi|261854752|ref|YP_003262035.1| ATP-dependent DNA helicase RecG [Halothiobacillus neapolitanus c2] gi|261835221|gb|ACX94988.1| ATP-dependent DNA helicase RecG [Halothiobacillus neapolitanus c2] Length = 692 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 250/678 (36%), Positives = 383/678 (56%), Gaps = 30/678 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE--ISE 66 L P+ + GVG + + L ++ + DLL++ P + +R + I + Sbjct: 15 LHLPVDSLAGVGPRVAAQLVRL------SIESIGDLLWHLPLRYENRGQIVPLGYHLIGQ 68 Query: 67 ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 ++ +T I++ S K R +D ITL F R L+ G+ + Sbjct: 69 SVLIHVT--IAEAKSLMRGKARQVAQGYDDAA-SITLWQFGRFGPTLQT----GQSYLLF 121 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS-RLPVL 185 G++++ + + M P I Q I +Y GLS + ++ +AL L L Sbjct: 122 GEVREGASGLEMAQPELI----QSAQLEAIVPIYPSTEGLSQSKLRTLVGQALRVALHDL 177 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW-TSPARERLAYDELLAGQIALLLMR 244 E + + Q+ +P++ A IH P A PA R+ +ELLA +AL L R Sbjct: 178 DECLPAPIRQRFGWPTMLAALQRIHAPVLADGVPTRDEPAFARMIGEELLAHLLALRLKR 237 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 + ++ ++ G++ Q++L + F PTK+Q + +I DM+Q + MLR++QGDVGS Sbjct: 238 HEQSRDHAPRLSAPGRLYQELLAQLHFLPTKAQTRVLDEIRADMAQGSPMLRLVQGDVGS 297 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKTLVA A A+E G Q +MAP +LA+QH ++ I V++++G + R Sbjct: 298 GKTLVAAGAALTAIEQGYQVALMAPTALLAEQHQRNFSQWFSPLGIDVQLLSGQQSASER 357 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----- 419 R +L +A ++ ++IGTHALFQ+ + + +L LVIVDEQHRFGV QRL L+ K T Sbjct: 358 RASLAALAEARSLMVIGTHALFQERVAFDQLGLVIVDEQHRFGVHQRLALSDKGTHPDRA 417 Query: 420 --APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 PH L+MTATPIPRTL +++ D+D+S I E P GR PI T ++ +R D++IER+ Sbjct: 418 GHRPHQLVMTATPIPRTLAMSAYADLDVSIIDELPPGRTPITTALVRSDRRDQLIERIST 477 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 V +EG++AYW+CP +E+ + ++ L E ++ ++HGRMS +K + M Sbjct: 478 VCAEGRQAYWVCPLVEDSERIEAQAAESTAELLREQLPHLTVGLVHGRMSAAEKNTQMAR 537 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK+ LL+ATTVIEVG+DV +AS++IIENA+ GLAQLHQLRGRVGRG S C+LL+ Sbjct: 538 FKSHEVDLLVATTVIEVGVDVPNASLMIIENADRMGLAQLHQLRGRVGRGRTDSYCVLLF 597 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 P+S + RLS+++ T+DGF +AE DL QR GEILG +Q+G+ K +A LL Sbjct: 598 DEPISDKARARLSLMRETQDGFRLAEADLAQRGPGEILGTRQTGLAKLRVADLVRDADLL 657 Query: 657 EIARKDAKHIL-TQDPDL 673 + AR+ A ++ Q PD+ Sbjct: 658 DTARQLADELIAAQSPDI 675 >gi|220909933|ref|YP_002485244.1| ATP-dependent DNA helicase RecG [Cyanothece sp. PCC 7425] gi|219866544|gb|ACL46883.1| ATP-dependent DNA helicase RecG [Cyanothece sp. PCC 7425] Length = 822 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 243/693 (35%), Positives = 400/693 (57%), Gaps = 32/693 (4%) Query: 3 PSFLNP-LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 P+ +P L PL+T G+G K L+K+ DLLFY+P ID + I Sbjct: 118 PTTRSPRLDQPLTTLSGIGPKSGDRLAKL------GLYTVRDLLFYYPRDHIDYARQVNI 171 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRP----YKILLNDGTGEITLLFFYRKT------- 110 +++ VT+ G + + + F R P +IL+ D +G+I L F+ Sbjct: 172 ADLEAGATVTLVGTVRRCNCFS-SPRNPKLTILEILIRDRSGQIKLNRFWAGDRFRQRGW 230 Query: 111 -EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA-----VYSLPT 164 E K ++ G I +G +K+ K + + P + D ++ VYSL Sbjct: 231 QEQQKRLYAPGVVIAASGLVKESKFGLTLEEPELEVLDQGDAKLDSLKVGRIVPVYSLSE 290 Query: 165 GLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPA 224 G+ DL ++ +V AL L E + + L Q S+ EA IH P D E + A Sbjct: 291 GIPPDLVRRAVVSALPAAKHLTEPLPEKLRQPYELISLVEAIAHIHFP---PDSEALAKA 347 Query: 225 RERLAYDELL-AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283 R+RL +DE L ++Q +++ + +G + ++ + +PF T +Q+ + D Sbjct: 348 RQRLVFDEFFYLQLGLLQRRQQQRQQQQSAVLAPQGHLLEQFYQILPFQLTGAQQRVVND 407 Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343 IL D++Q M R++QGDVGSGKT+VA++A+ AA+++G Q +MAP +LA+QHY + Sbjct: 408 ILNDLTQPAPMNRLVQGDVGSGKTVVAVVALLAAIQSGYQTALMAPTEVLAEQHYRKLVD 467 Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403 + + VE++TG+ A RR+ ++ G+ +++GTHAL Q+ +++ +L LV++DEQ Sbjct: 468 WFNRLCLPVELLTGSTKVAKRREIFAQLQTGELPLLVGTHALIQEGVEFQRLGLVVIDEQ 527 Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463 HRFGVQQR +L QK T+PHVL MTATPIPRTL LT GD+D+S+I E P GR+ I+T ++ Sbjct: 528 HRFGVQQRARLQQKGTSPHVLTMTATPIPRTLALTLHGDLDVSQIDELPPGRQAIQTTVL 587 Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAII 521 + + + ++ +++G++ Y + P +EE ++ + +S ++ L E + ++ Sbjct: 588 TASDRPQAYDLIRREIAQGRQVYIVLPLVEESEKLDLKSAIDEHQHLQETVFPQFRVGLL 647 Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581 HGRM+ KE ++ F+ G +LL++TTV+EVG+D+ +A++++IE+AE FGL+QLHQLRG Sbjct: 648 HGRMTAAAKEEAINEFRRGETQLLVSTTVVEVGVDIPNATVMLIEHAERFGLSQLHQLRG 707 Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641 RVGRG S C+L+ + ++ + RL VL ++DGF IAE DL+ R GE+LG +QSG+ Sbjct: 708 RVGRGAAQSYCLLM-NSSRAETARQRLGVLAQSQDGFFIAEMDLRLRGPGEVLGTRQSGL 766 Query: 642 PKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 P +A+ ++LE++R A+ ++ D L Sbjct: 767 PDLALARLVEDQAVLELSRAAAEKVMAIDSTLA 799 >gi|209520459|ref|ZP_03269219.1| ATP-dependent DNA helicase RecG [Burkholderia sp. H160] gi|209499104|gb|EDZ99199.1| ATP-dependent DNA helicase RecG [Burkholderia sp. H160] Length = 760 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 252/661 (38%), Positives = 371/661 (56%), Gaps = 31/661 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D I + I G + + + RR + L D Sbjct: 87 TRDIDLVLHLPMRYEDETSLTPIGHLLPGGIAQAEGVVFDNE-IAYRPRRQLLVKLRDAD 145 Query: 99 G-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157 G E+ L F +K G ++ V G ++ + MVHP D + PL + Sbjct: 146 GDELVLRFLNFYGSQVKQ-MAPGARLRVRGDVRGGFFGMEMVHPTV---RVVDEDTPLPQ 201 Query: 158 A---VYSLPTGLSVDLFKKIIVEALSR--LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHN 211 A VY G+S +K I AL+R LP +LPE + + L+ P++ +A +H+ Sbjct: 202 ALTPVYPSTAGVSQAYLRKAIDNALARTSLPELLPEPVARAFLEPLGVPALMDAVRTLHH 261 Query: 212 PRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG--IP---INVEGKIA 262 P D + T PA R+ ++ELLA Q++L + + +P + E + Sbjct: 262 PGAQSDETALMDGTHPAWVRIKFEELLAQQMSLKRAHDERRARAAPTMPRRKLGDESALV 321 Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 ++L+ +PFS T +QE +I D++Q + M R+LQGDVGSGKT+VA +A A A++AG Sbjct: 322 ARLLKALPFSLTAAQERVGGEIALDLTQPHPMQRLLQGDVGSGKTIVAALAAAQAIDAGY 381 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 QA +MAP ILA+QH ++ + + + V + G++ +R A+E A G A ++IGT Sbjct: 382 QAALMAPTEILAEQHARKLRGWLEPLGVKVAWLAGSLKTKEKRAAIEAAALGTAQLVIGT 441 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPR 433 HA+ QD++++ +L LVIVDEQHRFGV QRL L KA PH L+M+ATPIPR Sbjct: 442 HAIIQDAVEFARLGLVIVDEQHRFGVAQRLALRAKAQGAAAGAPDFQPHQLMMSATPIPR 501 Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493 TL +T D+D+S I E P GR PI T ++ R +EVI R++ G++ YW+CP IE Sbjct: 502 TLAMTYYADLDVSTIDELPPGRTPILTKLVSDARREEVIGRVREAALTGRQVYWVCPLIE 561 Query: 494 EKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552 E + ++ VE + +L + ++HGR++ +K +VMD+F +LL+ATTVIE Sbjct: 562 ESETLQLQTAVETYETLVAALPELKVGLVHGRLAPAEKATVMDAFTRNEIQLLVATTVIE 621 Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612 VG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+LLY PLS + RL ++ Sbjct: 622 VGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAASVCVLLYTGPLSMTARARLQTMR 681 Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 T DGF IA DL+ R GE LG +QSG A + L+E AR+ A +L PD Sbjct: 682 ETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLQNDQHLIEPAREAAAKLLDHYPD 741 Query: 673 L 673 + Sbjct: 742 V 742 >gi|118594142|ref|ZP_01551489.1| ATP-dependent DNA helicase [Methylophilales bacterium HTCC2181] gi|118439920|gb|EAV46547.1| ATP-dependent DNA helicase [Methylophilales bacterium HTCC2181] Length = 677 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 229/596 (38%), Positives = 347/596 (58%), Gaps = 18/596 (3%) Query: 85 QKRRPYKILLNDGTGEITLLF--FYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH 142 Q R+ +++ D TG + L F FY F EG + G++ M+HP Sbjct: 65 QPRKNLTVVIEDATGSLQLRFLNFYSSQS---RQFSEGVIVRAYGEVNPKSLIKEMIHPD 121 Query: 143 YIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 Y + + +Y+L GL ++ KK + + +L + E ++ K++ Sbjct: 122 YEIIVTDKPLPKCLTPIYALTRGLGQKSILNFVKKTFDQIAKKDTLLDHFPELNI--KRN 179 Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE 258 P + ++ +H P K E P R++L YDELLA Q+ + Q K I I + Sbjct: 180 LPDLTKSLRELHMPSSTKP-EDIDPYRKKLIYDELLAHQLFFRGLYHQQKNYIAKKIIFD 238 Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318 + + ++ F+ T QE+ +I+ D+ M R+LQGDVGSGKT+VA +A A+ Sbjct: 239 RSLHDAFVSSLEFTLTGQQENCFNEIMSDLGCSFPMNRLLQGDVGSGKTVVATMAALQAI 298 Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378 + GGQ MAP ILA+QHY ++ + I VE ++G++ ++ ER+ G+ + Sbjct: 299 KNGGQVGFMAPTEILAEQHYIKLRDWLNPLNISVEFLSGSISAPEKKIIYERLVEGRIDL 358 Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-----TQKATAPHVLLMTATPIPR 433 ++GTHAL QD +++ L L I+DEQHRFGV+QRL++ T+ H L+M+ATPIPR Sbjct: 359 LVGTHALIQDKVRFKSLALYIIDEQHRFGVEQRLQIRSNNKTRAHEEAHQLMMSATPIPR 418 Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493 TL ++ D+DIS I E P GR+PIKT +I +R ++++ ++ +EG + YW+CP IE Sbjct: 419 TLSMSYFADMDISTINELPPGRQPIKTKLISDSRRNDLLTIIQKHCNEGNQVYWVCPLIE 478 Query: 494 EKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552 E + +V F L F S +IA+IHG+M +KE++M +FK G ++L+ATTVIE Sbjct: 479 ESEVLQLETVENTFQQLSSFFKSQTIALIHGKMKQSEKETIMQTFKAGHTQILVATTVIE 538 Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612 VG+DV +A+++IIENAE GL+QLHQLRGRVGRG + S+CIL Y L+ + RL ++ Sbjct: 539 VGVDVPNATMMIIENAERMGLSQLHQLRGRVGRGSKQSTCILFYGKKLTDTAKDRLRIIY 598 Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668 DGF I+EEDLK R GE LG+KQSG+P IA D LL +A+ DA+++LT Sbjct: 599 ENTDGFKISEEDLKLRGPGEFLGLKQSGLPSLKIANINKDDDLLALAKSDAEYLLT 654 >gi|193222220|emb|CAL60528.2| ATP-dependent DNA helicase recG [Herminiimonas arsenicoxydans] Length = 711 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 258/671 (38%), Positives = 380/671 (56%), Gaps = 45/671 (6%) Query: 29 KIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE-----RIVTITGYISQHSSFQ 83 K+I G ++ +D + + P + D +I ISE R V + G ++ Sbjct: 38 KLIKLGLRSD---MDKVLHLPLRYEDE---TEIRSISEAGFIFGRSVQVEGVVTA-CEVA 90 Query: 84 LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143 + RR + ++D +G++ + F +K + EG ++ G+++ MVHP Y Sbjct: 91 FRPRRQLVVTISDDSGQLVMRFLNFYGSQVKQMA-EGNRVRARGEVRHGFFGAEMVHPSY 149 Query: 144 IFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLPVLPEW---IEKDLLQKK 197 PL A VY GLS L +K I++A++R+ EW + + L Sbjct: 150 KMVTE---GAPLPSALTPVYPAGEGLSQTLLRKTIIDAMARI----EWRDTLSEQLRSSL 202 Query: 198 SFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQF-KKEIG 252 S A ++HNP D + + A R+ +DELLA Q+++ R Q ++E G Sbjct: 203 DLMSFEPAVRLLHNPPPDIDESVLADRSHAAWVRMKFDELLAQQLSM--KRAQIARREKG 260 Query: 253 IPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 + GK+++ L+ +PFS T +Q+ ++++ D+ Q M R+LQGDVGSGKT+VA Sbjct: 261 AAVLPTIGKLSKAFLKQLPFSLTAAQQRVLEEVRADLKQSFPMQRLLQGDVGSGKTVVAA 320 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 IA A A+++G QAV+MAP ILA QH+ I + + + V +TG++ + + +A RI Sbjct: 321 IAAAQAIDSGFQAVLMAPTEILADQHFRKIAGWMEPLGVNVAWLTGSLKKKEKLEAKARI 380 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK---ATA-------P 421 G A +IIGTHAL Q+ +Q+ KL LVIVDEQHRFGV QRL L K A+A P Sbjct: 381 ESGVAQLIIGTHALIQEDVQFSKLGLVIVDEQHRFGVGQRLVLRNKGLDASAAAAQQKIP 440 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 H L+M+ATPIPRTL +T D+++S I E P GR PI T +I NR DEVIER+ E Sbjct: 441 HQLMMSATPIPRTLAMTYYADLEVSVIDELPPGRTPIVTRVIDQNRRDEVIERVHAAALE 500 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540 G++ YW+CP IEE + ++ + +L + ++HGRM DK+ VMD+F G Sbjct: 501 GRQVYWVCPLIEESEALQLQTATDTHQTLVAALPDLQVGLVHGRMKPADKQQVMDAFTRG 560 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L+ATTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG S C+LLY PL Sbjct: 561 DIHVLVATTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGSTASVCLLLYQGPL 620 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + RL +++ + DGF IA +DL+ R GE LG +QSG A E L++ AR Sbjct: 621 GMVAKQRLRIMRESTDGFEIARKDLEIRGPGEFLGARQSGQAMLRFADLETDQWLVDRAR 680 Query: 661 KDAKHILTQDP 671 A+ +L DP Sbjct: 681 DLAQTLLRDDP 691 >gi|294674608|ref|YP_003575224.1| ATP-dependent DNA helicase RecG [Prevotella ruminicola 23] gi|294473780|gb|ADE83169.1| ATP-dependent DNA helicase RecG [Prevotella ruminicola 23] Length = 697 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 244/647 (37%), Positives = 375/647 (57%), Gaps = 16/647 (2%) Query: 41 FIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYISQHSSFQLQKRRPYKIL-LNDGT 98 + DLL Y+P ++DR I E++ + V + G+I +F + R+ + DGT Sbjct: 31 YGDLLEYYPYKYVDRSKVYTIHELTGDMPFVQVVGHILSFETFPMGPRKERVVAHFTDGT 90 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 G I L ++ + K + G + V GK NRI HP + D+ ++ Sbjct: 91 G-ICDLTWFNGGKYAKQNYKIGTEYLVFGKPTVFNNRINFTHPDLDDASKVDLTAMGLQP 149 Query: 159 VYSLP-----TGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213 Y+ +GL+ +++ + +LP PE I + Q A +H P+ Sbjct: 150 YYNTTEKMKKSGLNSRAIERLTKTLIEKLPPQPETIPDFIYQPLHLVGRDFALRTVHYPQ 209 Query: 214 KAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEIGIPINVEGKIAQKILRN-IPF 271 AKD E AR RL ++EL Q+ +L Q +K G + G + +PF Sbjct: 210 NAKDLER---ARLRLKFEELFFIQLNILRYASDQRRKFRGYVFSTVGDVFNTFYSQYLPF 266 Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331 T +Q+ IK+I +DM +M R+LQGDVGSGKTLVAL++M A++ G QA IMAP Sbjct: 267 PLTGAQKRVIKEIRKDMGSGRQMNRLLQGDVGSGKTLVALMSMLIAIDNGYQACIMAPTE 326 Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391 ILA+QH + I + ++ + V ++TG + R + LE + G +I++GTHA+ +D++Q Sbjct: 327 ILAEQHLQTIMGFLKDMNLRVALLTGMVKGKRREEVLEGLLDGTINILVGTHAVIEDTVQ 386 Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + +L V+VDEQHRFGV QR KL K+T PHVL+MTATPIPRTL +T GD+D+S I E Sbjct: 387 FARLGFVVVDEQHRFGVAQRAKLWSKSTNPPHVLVMTATPIPRTLAMTLYGDLDVSIIDE 446 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P GRKP++T + +R+ + + ++ ++EG++ Y + P IEE +S+ +++ + F L Sbjct: 447 LPPGRKPVQTTHVFDSRMTSLYDGIRRQINEGRQVYIVFPLIEESAKSDLKNLEDGFEVL 506 Query: 511 HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 E F ++ +HGRM DKE M F G ++L+ATTVIEVG++V +AS+++I A+ Sbjct: 507 REAFPEFRLSKVHGRMKPKDKEEEMQRFVRGETQILVATTVIEVGVNVPNASVMVILEAQ 566 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629 FGLAQLHQLRGRVGRG + S CIL+ LS+++ R+ ++ +T DGF IAE DLK R Sbjct: 567 RFGLAQLHQLRGRVGRGADQSYCILVTPFKLSEDTRKRIDIMCDTNDGFRIAEADLKLRG 626 Query: 630 EGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKHILTQDPDLTS 675 G++ G +QSGM L IA ++++AR +A+ I+ +DP+ S Sbjct: 627 PGDLEGTQQSGMAFDLKIADIARDGQIVQMARDEAQKIIDEDPECNS 673 >gi|187922703|ref|YP_001894345.1| ATP-dependent DNA helicase RecG [Burkholderia phytofirmans PsJN] gi|187713897|gb|ACD15121.1| ATP-dependent DNA helicase RecG [Burkholderia phytofirmans PsJN] Length = 832 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 249/660 (37%), Positives = 372/660 (56%), Gaps = 29/660 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D I + I G + + +R+ L +D Sbjct: 159 TRDIDLVLHLPMRYEDETSLTPIGHLLPGGISQTEGVVFDNEIAYRPRRQLLVKLRDDAG 218 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 E+ L F +K + G ++ V G ++ + MVHP D + PL +A Sbjct: 219 DELVLRFLNFYGSQVKQMAI-GARLRVRGDVRGGFFGMEMVHPAV---RVVDEDTPLPQA 274 Query: 159 ---VYSLPTGLSVDLFKKIIVEALSR--LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 VY G++ +K I ALSR LP +LPE + + + PS+ +A +H+P Sbjct: 275 LTPVYPSTAGVTQAYLRKSIDNALSRTSLPELLPEAVARTFMAPLGVPSLMDAVRTLHHP 334 Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLM--RKQFKKEIGIP---INVEGKIAQ 263 D + T PA R+ ++ELLA Q++L ++ + +P + E + Sbjct: 335 GVQSDETALIDGTHPAWVRIKFEELLAQQMSLKRAHDERRTRAAPAMPRRKLGDEAALVA 394 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 ++L+ +PFS T +QE +I D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q Sbjct: 395 RLLKALPFSLTAAQERVGGEIALDLTQPHPMQRLLQGDVGSGKTIVAALAAAQAIDAGYQ 454 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 A +MAP ILA+QH ++ + + + V + G++ +R A+E A G A ++IGTH Sbjct: 455 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKTREKRAAIEAAALGTAQLVIGTH 514 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---------APHVLLMTATPIPRT 434 A+ QD++++ +L LVIVDEQHRFGV QRL L KA PH L+M+ATPIPRT Sbjct: 515 AIIQDAVEFARLGLVIVDEQHRFGVAQRLALRAKAQNAADGARDFQPHQLMMSATPIPRT 574 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L +T D+D+S I E P GR PI T ++ R +EVI R++ G++ YW+CP IEE Sbjct: 575 LAMTYYADLDVSTIDELPPGRTPILTKLVSDARREEVIGRVREAALTGRQVYWVCPLIEE 634 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ VE + +L + ++HGR++ +K +VMD+F +LL+ATTVIEV Sbjct: 635 SETLQLQTAVETYETLVAALPELKVGLVHGRLAPAEKAAVMDAFTRNEVQLLVATTVIEV 694 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+LLY PLS + RL ++ Sbjct: 695 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAASVCVLLYTGPLSMTARARLQTMRE 754 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 T DGF IA DL+ R GE LG +QSG A + L+E AR+ A +L + P++ Sbjct: 755 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLQNDQWLIEPAREAAAVLLEKYPEV 814 >gi|134093582|ref|YP_001098657.1| ATP-dependent DNA helicase RecG [Herminiimonas arsenicoxydans] Length = 770 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 251/666 (37%), Positives = 376/666 (56%), Gaps = 35/666 (5%) Query: 29 KIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE-----RIVTITGYISQHSSFQ 83 K+I G ++ +D + + P + D +I ISE R V + G ++ Sbjct: 97 KLIKLGLRSD---MDKVLHLPLRYEDE---TEIRSISEAGFIFGRSVQVEGVVTA-CEVA 149 Query: 84 LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143 + RR + ++D +G++ + F +K + EG ++ G+++ MVHP Y Sbjct: 150 FRPRRQLVVTISDDSGQLVMRFLNFYGSQVKQMA-EGNRVRARGEVRHGFFGAEMVHPSY 208 Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW---IEKDLLQKKSFP 200 + VY GLS L +K I++A++R+ EW + + L Sbjct: 209 KMVTEGAPLPSALTPVYPAGEGLSQTLLRKTIIDAMARI----EWRDTLSEQLRSSLDLM 264 Query: 201 SIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256 S A ++HNP D + + A R+ +DELLA Q+++ + +++ + Sbjct: 265 SFEPAVRLLHNPPPDIDESVLADRSHAAWVRMKFDELLAQQLSMKRAQIARREKGAAVLP 324 Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316 GK+++ L+ +PFS T +Q+ ++++ D+ Q M R+LQGDVGSGKT+VA IA A Sbjct: 325 TIGKLSKAFLKQLPFSLTAAQQRVLEEVRADLKQSFPMQRLLQGDVGSGKTVVAAIAAAQ 384 Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376 A+++G QAV+MAP ILA QH+ I + + + V +TG++ + + +A RI G A Sbjct: 385 AIDSGFQAVLMAPTEILADQHFRKIAGWMEPLGVNVAWLTGSLKKKEKLEAKARIESGVA 444 Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK---ATA-------PHVLLM 426 +IIGTHAL Q+ +Q+ KL LVIVDEQHRFGV QRL L K A+A PH L+M Sbjct: 445 QLIIGTHALIQEDVQFSKLGLVIVDEQHRFGVGQRLVLRNKGLDASAAAAQQKIPHQLMM 504 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486 +ATPIPRTL +T D+++S I E P GR PI T +I NR DEVIER+ EG++ Y Sbjct: 505 SATPIPRTLAMTYYADLEVSVIDELPPGRTPIVTRVIDQNRRDEVIERVHAAALEGRQVY 564 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545 W+CP IEE + ++ + +L + ++HGRM DK+ VMD+F G +L Sbjct: 565 WVCPLIEESEALQLQTATDTHQTLVAALPDLQVGLVHGRMKPADKQQVMDAFTRGDIHVL 624 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 +ATTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG S C+LLY PL + Sbjct: 625 VATTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGSTASVCLLLYQGPLGMVAK 684 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665 RL +++ + DGF IA +DL+ R GE LG +QSG A E L++ AR A+ Sbjct: 685 QRLRIMRESTDGFEIARKDLEIRGPGEFLGARQSGQAMLRFADLETDQWLVDRARDLAQT 744 Query: 666 ILTQDP 671 +L DP Sbjct: 745 LLRDDP 750 >gi|189345929|ref|YP_001942458.1| ATP-dependent DNA helicase RecG [Chlorobium limicola DSM 245] gi|189340076|gb|ACD89479.1| ATP-dependent DNA helicase RecG [Chlorobium limicola DSM 245] Length = 706 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 251/710 (35%), Positives = 384/710 (54%), Gaps = 40/710 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 + + L+T +GVG K + L + G A D Y P ++DR +I E+ Sbjct: 3 VLSSLTTLKGVGPKRATILEQ---AGIATPENLFD---YFPRRYLDRRTIRRIGELRAGE 56 Query: 69 IVTITGYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 VT+ G + Q Q R +K++L DGTG I L +F + + G + V G Sbjct: 57 AVTVVGTVLQARLEGTQPGRMRFKVVLADGTGSIELTWF-KGVRYFASSVAPGDALAVNG 115 Query: 128 KIKKLKNRIIMVHPHY-------------------IFHNSQDVN-FPLIEAVYSLPTGLS 167 K+ ++ M HP + +FH + + +P+ A+ GL Sbjct: 116 KVGVFGRQMQMQHPDFEHLSRTSVHENQEGGSDYELFHTGRIIPLYPVSAAMKQ--GGLH 173 Query: 168 VDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE 226 + II A R P E + ++++ +AEA+ +H P + E AR Sbjct: 174 SRQLRTIIAGAFERFPPGRDENLTPGIIREYGLLPLAEAYREMHFPSSPEKLE---EART 230 Query: 227 RLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDIL 285 R+ + EL Q+ L ++ P G++ ++ +PF+ T +Q+ I++I Sbjct: 231 RMKWTELFYTQLLFALKHAHLERNHSAPCFTHSGEVTRRFYAGLPFALTDAQKQVIREIY 290 Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345 +D+ + M R+LQGDVGSGKT+VA+ +MA A + G Q+ MAP ILA QH+ +K+ Sbjct: 291 RDLKRARPMNRLLQGDVGSGKTMVAMFSMALAADNGLQSAFMAPTEILAVQHFLSLKRSL 350 Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405 I V ++ G + R AL +A G + +GTHA+ + + + +L LVI+DEQHR Sbjct: 351 HPLGIDVALLAGRQRKKEREAALSGLADGSLTVAVGTHAMIEKGVSFSRLGLVIIDEQHR 410 Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465 FGV QR L KA +PHVLLMTATPIPRTL + GD+D+S I PAGR PI+T ++ Sbjct: 411 FGVLQRKALQDKAASPHVLLMTATPIPRTLTMAGFGDLDVSVIDAMPAGRVPIRTQLVSE 470 Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHG 523 + + V E L+ ++ G++AY + P +EE ++ + R+ VE + L + +IHG Sbjct: 471 HSKNRVYELLRREVASGRQAYIVYPLVEESEKIDLRAAVESYGELAATTLGDLRLGLIHG 530 Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583 +M+ +KES MD F+ G +L+ TTVIEVG+DV +A++++IE+AE FGLAQLHQLRGRV Sbjct: 531 QMTPEEKESAMDRFRAGEIDVLVGTTVIEVGVDVPNATVMVIEHAERFGLAQLHQLRGRV 590 Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643 GRG SSC L+ H P S ++ RL +++T DGF I+E D R G +LG +Q+GM Sbjct: 591 GRGRHASSCFLI-HAPFSGDAGERLRAMESTPDGFKISEIDAAIRGAGNVLGKEQAGMVS 649 Query: 644 FL-IAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692 L +A P L SL++ ARK A + +D +L + IR YL Y++ Sbjct: 650 GLKLADPLLDASLMQTARKAAFALAAEDGELRAREHAMIRS-CYLRYYHD 698 >gi|83595864|gb|ABC25226.1| ATP-dependent DNA helicase [uncultured marine bacterium Ant4D3] Length = 685 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 233/622 (37%), Positives = 356/622 (57%), Gaps = 23/622 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLLF+ P+ + DR +S + + + G I+ +S Q +R + ++ + Sbjct: 27 DLLFHLPNRYQDRTRLVPLSALKPKTACLVEGQITS-TSVQRGRRVSLLVGISHNNATLG 85 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE---AV 159 L F + K+ F GR I G I+ + MVHP Y+ + DV L + + Sbjct: 86 LRFMHFHANQAKS-FTAGRNIRCFGDIRPGPQGLEMVHPEYVMFD--DVPPALADQLTPI 142 Query: 160 YSLPTGLSVDLFKKIIVEALSRLP----VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215 Y GLS+ ++I A +L VL E + + L+ + PS+ E+ +H P Sbjct: 143 YPTTDGLSLTRMGQLISLAWFQLEQGKLVLDELLPQQLISRYQLPSLEESLKQLHYPTLH 202 Query: 216 KDFEW----TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV--EGKIAQKILRNI 269 +D +PA+ RL +EL+A Q+ L +KQ +++ P+ V EG + +++N+ Sbjct: 203 QDLNQLQNEVTPAKLRLVLEELIAQQLTLSQAKKQ-SQQLPAPVMVIKEG-LEHGLIKNL 260 Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF TK+Q+ +++ D+ M+R++QGDVGSGKT++A +A A++ G Q ++AP Sbjct: 261 PFQLTKAQQRVWQEVASDLVTPAPMVRMVQGDVGSGKTVLAALAACRAIDNGCQVAVLAP 320 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILA+QH + + V +TG +R++L I G +I+GTHALFQD+ Sbjct: 321 TEILAEQHLHSFSHWLNPLGVNVVWLTGKQKAQTKRQSLAAITSGDGQVIVGTHALFQDA 380 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKA---TAPHVLLMTATPIPRTLVLTSLGDIDIS 446 + Y L LVI+DEQHRFGV QR L +KA H L+MTATPIPRTL +++ GD+D S Sbjct: 381 VHYQHLGLVIIDEQHRFGVAQRHSLVKKAPQGCGLHQLVMTATPIPRTLAMSAYGDLDHS 440 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 I E P GRKPI +V++ NR +VIER+ + S G++ YWICP IE + Sbjct: 441 VIDELPPGRKPINSVLLNNNRRADVIERIHLACSSGQQVYWICPLIETSDVLQCEAAQAT 500 Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 L + + + ++HGR++ +K M FK+G +LL+ATTV+EVG+DV +A++++I Sbjct: 501 AALLTQQLDNIKVGLVHGRLNGAEKADAMARFKSGDIQLLVATTVVEVGVDVPNANLMVI 560 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625 +NAE GLAQLHQLRGRVGRG+ S C+ +Y PLSK RL +L+ + DGF+IAE+DL Sbjct: 561 DNAERLGLAQLHQLRGRVGRGQAQSHCLFMYQAPLSKMGRERLDILRQSNDGFVIAEKDL 620 Query: 626 KQRKEGEILGIKQSGMPKFLIA 647 + R GE+LG +Q+G IA Sbjct: 621 QLRGPGEVLGTRQAGAIGLRIA 642 >gi|323702705|ref|ZP_08114366.1| ATP-dependent DNA helicase RecG [Desulfotomaculum nigrificans DSM 574] gi|323532368|gb|EGB22246.1| ATP-dependent DNA helicase RecG [Desulfotomaculum nigrificans DSM 574] Length = 685 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 240/668 (35%), Positives = 384/668 (57%), Gaps = 21/668 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P+ +GVG S L ++ DLL++ P + DR + + T Sbjct: 7 PVQFLKGVGPSRSKQLERL------GIITIEDLLYHFPREYHDRSLIRPAHSFAHGEMAT 60 Query: 72 ITGYISQHSSFQLQKRRPY---KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 + G + S + + RR K+ L DG ++F +K + G+K+ +TGK Sbjct: 61 VKGTVIGGS--ETKPRRGLTITKLALQDGAATFYAVWF--NQPYIKKQYTTGKKLLITGK 116 Query: 129 I-KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LP 186 I + + V H + + ++ I +Y +S + II AL ++ +P Sbjct: 117 IDRNFGLPQVHVTDHELLDGDEGLHSGRIVPIYPATENVSQRFLRSIIKFALDQIGTQVP 176 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E++ +L + + P + EA IH PR D E AR+R +EL Q+ L L R Sbjct: 177 EFLPDKILDRYNLPCLPEALYNIHFPR---DMESCQRARKRFILEELFLFQLGLGLQRSY 233 Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 ++ + +G++ ++L+N+PFS T +Q+ ++I D+ + M R+LQGDVG+GK Sbjct: 234 LTRQPKMHRYNQGRLTGQLLQNLPFSLTAAQQRVWQEIESDLQGPHPMNRLLQGDVGAGK 293 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366 T+VA +A+ A E+G Q +MAP +LA+QH IK++ + I V ++TG+ + R++ Sbjct: 294 TVVAALALCRAAESGLQGSLMAPTELLAEQHARSIKEFLEPLGIKVALLTGSSKRG-RQQ 352 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426 L IA+G +++GTHAL + +Q+ L LV+VDEQHRFGV+QR L K P +L+M Sbjct: 353 VLADIANGVIPVVVGTHALIYEQVQFKNLGLVVVDEQHRFGVRQRAALLDKGYRPDMLVM 412 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486 TATPIPRTL LT GD+D+S I E P GR+ IKT + + + + + ++ +G+++Y Sbjct: 413 TATPIPRTLALTLYGDLDVSVIDELPPGRQDIKTYHLTLAQAGKAVGLIRQQADQGRQSY 472 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLL 545 +CP +EE ++ + ++ ++ F L + S + ++HGRM +KESVM +F+ G+ +L Sbjct: 473 VVCPLVEESEKLDTQAAIDLFERLQKALPSCRVGLLHGRMKANEKESVMTAFRQGSLDVL 532 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 ++TTVIEVG+DV +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ + P +K + Sbjct: 533 VSTTVIEVGVDVPNATVMVIWDAQRFGLAQLHQLRGRVGRGSQQSYCILVAN-PTTKEAQ 591 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665 R+ + T+DGF++AEEDLK R GE G +QSG+P F IA + ARK+A Sbjct: 592 ERIKAMCRTQDGFVLAEEDLKLRGPGEFFGTRQSGLPNFKIADLVRDRREVAQARKEAAQ 651 Query: 666 ILTQDPDL 673 +L QDPDL Sbjct: 652 LLAQDPDL 659 >gi|290473314|ref|YP_003466180.1| DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration [Xenorhabdus bovienii SS-2004] gi|289172613|emb|CBJ79382.1| DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration [Xenorhabdus bovienii SS-2004] Length = 693 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 248/661 (37%), Positives = 373/661 (56%), Gaps = 46/661 (6%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+T RGVG ++K+ G N + L + D+ I+++ T Sbjct: 10 PLTTLRGVGASQ---VTKLAKLGLVNLQDLLLHLP---LRYEDQTRLYSINDLLPGVYAT 63 Query: 72 ITGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 +TG + H +F +RR ++DGTG +TL FF T +KN EG+ + G+I+ Sbjct: 64 VTGEVLRTHVTFG--RRRIMTCQISDGTGVLTLRFF-NFTAAMKNNLAEGKHVIAYGEIR 120 Query: 131 KLKNRIIMVHPHYIFHNS------QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP- 183 + ++HP Y QD P +Y G+ +K+I +AL L Sbjct: 121 RGNQGPEIIHPEYKTQQHAERIQLQDTLTP----IYPTTEGVRQTTLRKLIEQALELLDT 176 Query: 184 -----VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS------PARERLAYDE 232 +LPE + L+ S+ A + +H P D T PA+ RL +E Sbjct: 177 CVINELLPEEFSRKLI------SLPNALHTLHRP--PPDVSLTDLDNRRHPAQRRLILEE 228 Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292 LLA +++L +R ++ + + + Q+++ +PF PT +Q + +I QD+ + Sbjct: 229 LLAHHLSMLAVRAGAQRFHAQQLTADNSLKQQLISQLPFVPTGAQVRVVAEIEQDLEKNV 288 Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352 M+R++QGDVGSGKTLVA +A A+ G Q +MAP +LA+QH +++ + I V Sbjct: 289 PMMRLIQGDVGSGKTLVAALAALRALVHGKQVALMAPTELLAEQHANTFRQWFEPLGIQV 348 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 + G R+ E IA+GQ +++GTHA+FQ+ +++ L LVI+DEQHRFGV QRL Sbjct: 349 GWLAGKQKGKARQAQQEAIANGQVSMVVGTHAMFQEQVRFSGLALVIIDEQHRFGVHQRL 408 Query: 413 KLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468 L +K PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R Sbjct: 409 ALWEKGCEQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDTRR 468 Query: 469 DEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526 +E+I+R+K L EG++AYW+C IE+ + ++ L I ++HGRM Sbjct: 469 NEIIQRIKSACLDEGRQAYWVCTLIEDSEVLEAQAAQATSEELALILPDLKIGLVHGRMK 528 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 +K+++MD+FK G +LL+ATTVIEVG+DV +AS++II+N E GLAQLHQLRGRVGRG Sbjct: 529 PAEKQTIMDAFKRGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRG 588 Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646 S C+LLY PL+ + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F I Sbjct: 589 AVASHCVLLYKTPLTNTAKIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFRI 648 Query: 647 A 647 A Sbjct: 649 A 649 >gi|225076550|ref|ZP_03719749.1| hypothetical protein NEIFLAOT_01598 [Neisseria flavescens NRL30031/H210] gi|224952113|gb|EEG33322.1| hypothetical protein NEIFLAOT_01598 [Neisseria flavescens NRL30031/H210] Length = 730 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 229/600 (38%), Positives = 344/600 (57%), Gaps = 7/600 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H + R+ + + DG+G + L F + G++I G+IK + M Sbjct: 115 HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASNQKQMAIGKRIRAVGEIKHGFHGDEM 174 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP S + L +Y GL+ ++II AL P L + + LL + Sbjct: 175 IHPKIRDAESSGLAESLT-PIYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLGRLK 232 Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 P +AE+ ++H+P + + T PA +RL +DELLA Q+++ L R++ Sbjct: 233 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGSATA 292 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + +G + Q + +PF+ T +QE + +I +DM+Q + M R+LQGDVGSGKT+VA ++ Sbjct: 293 LGGDGTLTQALRHALPFALTDAQERVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSA 352 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A+E+G Q +MAP ILA+QH+ K++ + + V ++G+ + + +A ++A G Sbjct: 353 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKTKLADG 412 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 I +GTHALF D +++ L LVIVDEQHRFGV QRL L K H L+M+ATPIPRT Sbjct: 413 TVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLALKNKGRDVHQLMMSATPIPRT 472 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I E P GR PIKT ++ R EV + + +G++AYW+CP IEE Sbjct: 473 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIEE 532 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ E L +I ++HGRM +K VM F G +L+ATTVIEV Sbjct: 533 SETLQLQTATETLEQLQAALPELNIGLVHGRMKAAEKAEVMAEFAAGCLNVLVATTVIEV 592 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +A++++IE+AE GLAQLHQLRGRVGRG S C+LL+ PLS+ + RL V+ Sbjct: 593 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYE 652 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA +DL R GE LG +QSG+P A E LLE AR+ A ++ Q+P++ Sbjct: 653 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEEDLHLLEQAREIAPLLIEQNPEI 712 >gi|161525831|ref|YP_001580843.1| ATP-dependent DNA helicase RecG [Burkholderia multivorans ATCC 17616] gi|189349448|ref|YP_001945076.1| ATP-dependent DNA helicase RecG [Burkholderia multivorans ATCC 17616] gi|160343260|gb|ABX16346.1| ATP-dependent DNA helicase RecG [Burkholderia multivorans ATCC 17616] gi|189333470|dbj|BAG42540.1| ATP-dependent DNA helicase [Burkholderia multivorans ATCC 17616] Length = 791 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 247/661 (37%), Positives = 372/661 (56%), Gaps = 27/661 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY-ISQHSSFQLQKRRPYKILLNDG 97 TR IDL+ + P + D I ++ I G I +++ +++ KI +DG Sbjct: 118 TRSIDLVLHLPMRYEDETTLTPIRDLLPGGIAQTEGVVIDNEVAYRPRRQLVVKIRDDDG 177 Query: 98 TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LI 156 ++ L F +K + G+++ V G ++ + MVHP + D P ++ Sbjct: 178 E-QLVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGMEMVHPAVRVVEA-DAPLPQVL 234 Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213 VY G+S +K I AL R P+ LP IE+D L+ P++A+A I+H+P Sbjct: 235 TPVYPSTAGVSQAYLRKAIENALERTPLPELLPPEIERDYLKPLGVPTLADAVRILHHPG 294 Query: 214 KAKD----FEWTSPARERLAYDELLAGQIALLLM--RKQFKKEIGIPINVE---GKIAQK 264 D + + PA R+ ++ELLA Q++L ++ + +P + + Sbjct: 295 VDSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAAPAMPRRTARDTDALTTR 354 Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324 + +PF T +Q + +I D++ + M R+LQGDVGSGKT+VA +A A A++AG QA Sbjct: 355 LYAALPFRLTGAQARVVDEIAHDLTLPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQA 414 Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384 +MAP ILA+QH ++ + + + V + G++ +R A+E A G A ++IGTHA Sbjct: 415 ALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAAIEAAALGTAELVIGTHA 474 Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTL 435 + QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRTL Sbjct: 475 IIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAQGFQPHQLMMSATPIPRTL 534 Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495 +T D+D+S I E P GR P+ T ++ R DEVI R++ G++ YW+CP IEE Sbjct: 535 AMTYYADLDVSTIDELPPGRTPVLTRVVGDARRDEVIARVREAALTGRQVYWVCPLIEES 594 Query: 496 KESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554 + ++ VE + +L + ++HGR+S DK +VMD+F +LL+ATTVIEVG Sbjct: 595 ETLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMDAFTRNEVQLLVATTVIEVG 654 Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614 +DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+LLY PLS RL ++ T Sbjct: 655 VDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYSGPLSIAGRERLKTMRET 714 Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 DGF IA DL+ R GE LG +QSG A E L++ AR A ++ PD+ Sbjct: 715 TDGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLIDPARDAAARLIAAYPDVV 774 Query: 675 S 675 + Sbjct: 775 T 775 >gi|20807935|ref|NP_623106.1| RecG-like helicase [Thermoanaerobacter tengcongensis MB4] gi|20516504|gb|AAM24710.1| RecG-like helicase [Thermoanaerobacter tengcongensis MB4] Length = 682 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 252/639 (39%), Positives = 387/639 (60%), Gaps = 19/639 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY--KILLNDGTGE 100 DL+FY P + DR KI ++ T YI+ S+ +++ R KI + DGTG Sbjct: 31 DLIFYFPRDYEDRSEIVKIEDLIVGEKQTFKAYIA-GSAREVKTSRVVITKIPVKDGTGA 89 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL--IEA 158 + L+++ +KN F G + ++GK++ ++++ +P + + +D+N I Sbjct: 90 VELVWY--NQPYMKNNFKIGEEYIISGKLQFKYGQLVVENP-VLEKSEEDLNLNTGRIVP 146 Query: 159 VYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 VY L GL+ ++ +K+I ALS L + E+ E++ L++K ++ EA IH P KD Sbjct: 147 VYGLTEGLTQNILRKVIFNALSEYLDEVEEFFEEEFLREKGLMNLKEALLNIHFP---KD 203 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK-ILRNIPFSPTKS 276 E + A+ RL Y EL Q+AL L++K K++ GI K+ K + N+PF T + Sbjct: 204 EEKLARAKYRLKYQELFLLQLALFLVKKSVKEKRGIRFR---KVDIKPFVSNLPFKLTSA 260 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q +K+I+ DM+ M R++QGDVGSGKT+VA AM A + G Q +MAP ILA+Q Sbjct: 261 QMKVLKEIILDMASDKVMNRLIQGDVGSGKTIVAAFAMYIAAKNGYQVAMMAPTEILAKQ 320 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 HY+ +++ + T I + +++G++ + R++ LE+I G+ +++GTHAL ++ + + L Sbjct: 321 HYKTLEEIFKGTDIRIGLLSGSLSPSGRKEVLEKIEKGEYDVVVGTHALIEEDVSFKNLG 380 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 L I DEQHRFGV+QR L QK P VL+MTATPIPRTL L GD+DIS I + P GRK Sbjct: 381 LCITDEQHRFGVRQRALLAQKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRK 440 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-- 514 +KT +IP + + E + +G++ Y +CP IEE + S + +++ Sbjct: 441 RVKTYVIPSSMRKKAYEFAIKEVKKGRQVYVVCPLIEESDKIKAASAEIVYREIYKDAFK 500 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + + ++HG+MSD DKE +M++F G +L++TTVIEVG++V +A+++I+ENAE FGLA Sbjct: 501 EARVGLLHGKMSDSDKERIMEAFVRGEIDILVSTTVIEVGVNVPNATVMIVENAERFGLA 560 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGR E S CIL+ + P S+ + RL VL T DGF IAE DL+ R GE L Sbjct: 561 QLHQLRGRVGRSEFQSYCILINYSP-SETAKKRLEVLARTSDGFKIAERDLEIRGPGEFL 619 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 G KQ G+P+F IA +L+ +KD + +L +DP L Sbjct: 620 GEKQHGLPEFKIANLFEDIDILKRVQKDVESLLEEDPKL 658 >gi|207721611|ref|YP_002252050.1| atp-dependent dna helicase protein [Ralstonia solanacearum MolK2] gi|206586772|emb|CAQ17357.1| atp-dependent dna helicase protein [Ralstonia solanacearum MolK2] Length = 730 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 250/665 (37%), Positives = 371/665 (55%), Gaps = 44/665 (6%) Query: 42 IDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ------HSSFQLQKRRPYKILLN 95 +DL+ + P + D + I+E TG+ +Q + L+ RR + + Sbjct: 57 VDLVLHLPMRYEDET---TLLTIAEAIARANTGWAAQVEGAVTRNEVALRPRRQLVVHIA 113 Query: 96 DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP- 154 D +GE+ L F +K + EG ++ V G+++ MVHP + + D P Sbjct: 114 DDSGELVLRFLNFYGSQVKQMA-EGVRLRVRGEVRGGFFGAEMVHP-TVRAVAPDEPLPD 171 Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP----SIAEAFNIIH 210 + VY G++ +K I+ AL R P LPE + L++ P + AEA ++H Sbjct: 172 RLTPVYPSTAGVAQAYLRKAILNALGRTP-LPETLPDSLMRGPLAPLKLMAPAEAVRLLH 230 Query: 211 NPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPI----NVEGKI 261 P D E T PA R+ +DELLA Q++L R Q + P+ +G + Sbjct: 231 QPTPDVDEHSLVERTHPAWLRIKFDELLAQQLSL--KRAQAARRTRSAPVLRAGGAQGLL 288 Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321 A + + +PF T +Q ++I D+++ M R+LQGDVGSGKT++A +A A++AG Sbjct: 289 A-RFMAALPFKLTGAQARVWEEIRADLARPYPMQRLLQGDVGSGKTVIAALAACQAIDAG 347 Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 QA +MAP +LA+QHY + + + + + + G++ + + +A R+A G A ++IG Sbjct: 348 RQAALMAPTELLAEQHYRKLSAWLEPLGVDIVWLAGSLKRKQKDEAAARVAAGAAQLVIG 407 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------------PHVLLMTAT 429 THAL QDS+ + +L L +VDEQHRFGV QRL L KA PH L+M+AT Sbjct: 408 THALIQDSVTFARLGLAVVDEQHRFGVAQRLALRGKAGGADAPVAETAQPVPHQLMMSAT 467 Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489 PIPRTL +T D+D+S I E P GR P+ T ++ R DEVIER+ EG++ YW+C Sbjct: 468 PIPRTLAMTYYADLDVSAIDELPPGRTPVVTRLVNDARRDEVIERIHAAAREGRQVYWVC 527 Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548 P IEE + ++ VE F +L + + ++HGR+ DK +VM +F G +L+AT Sbjct: 528 PLIEESEALQLQTAVETFETLSQSLAGLKVGLVHGRLPSADKAAVMSAFAGGELHVLVAT 587 Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608 TVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S CILLY PLS + RL Sbjct: 588 TVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCILLYQAPLSPTAKQRL 647 Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHIL 667 ++ T DGF IA DL R GE LG +QSG A HD+ ++E A+ A+ +L Sbjct: 648 QTMRETTDGFEIARRDLDIRGPGEFLGARQSGEAMLRFADLN-HDAWMVEFAQGAAEQML 706 Query: 668 TQDPD 672 + P+ Sbjct: 707 ARFPE 711 >gi|254797042|ref|YP_003081879.1| ATP-dependent DNA helicase RecG [Neorickettsia risticii str. Illinois] gi|254590278|gb|ACT69640.1| ATP-dependent DNA helicase RecG [Neorickettsia risticii str. Illinois] Length = 675 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 233/636 (36%), Positives = 345/636 (54%), Gaps = 13/636 (2%) Query: 33 CGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITG-YISQHSSFQLQKR--RP 89 C + +R +DLL Y P F++R I+ E VTI Y F +R R Sbjct: 23 CNLVSGSRVVDLLLYKPRGFVNRCNFKAIANSVEGEFVTIEARYEGSKEHFHRFRRVKRF 82 Query: 90 YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ 149 +K D + + F+ KT + + + G V G++ M HP I S+ Sbjct: 83 HKFFFKDKNEDSLEVIFFAKTYLQRKLKI-GEWYLVNGRMGASAQ---MFHPDKILRLSE 138 Query: 150 DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNII 209 E Y L G++ F ++ L EW+EK L+K S S +A + Sbjct: 139 LAKLSAFEPKYRLSDGVTNHQFLSLVDRLLKSSKPPEEWLEKASLKKNSLISWGKAIEQL 198 Query: 210 HNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269 H+P +FE A +RLAYDE+LA + + Q + PI +G + + + Sbjct: 199 HHPSSEVEFE---QACKRLAYDEILAMHLVNNSLYAQVLNQKKEPIKGDGSMTALLRSRL 255 Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PFS T QE I+ I Q RM+ +LQGDVGSGKTLV + AM AVE G Q V+++P Sbjct: 256 PFSLTAGQEEVIEKIHVLQGQTVRMIALLQGDVGSGKTLVVIFAMLNAVEMGKQVVLLSP 315 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QH+E ++K + + ++TG R + L+ I G +I+ THA+ Sbjct: 316 TIVLAKQHFEVLQKLVPELKPV--LLTGGQVACSREQFLQDIRSGNVKVIVATHAILAVE 373 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + ++ L L+++DEQHRFG QR KL ++ ++L++ATPIPRT+ G I + + Sbjct: 374 VLFFDLGLLVIDEQHRFGANQRTKLIRENPGADLVLVSATPIPRTIGQVLFGSITLLNLR 433 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 EKP R + T + ++I +IER++V+L +G K +WICP IEE + S SV ERF Sbjct: 434 EKPKSRPLVTTSTVTKSKITTLIERIRVILGKGSKVFWICPVIEESENSKVVSVTERFRL 493 Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 L +HF + +HG +S E + F+NG K+L+ATTV+EVG+D+ D +I+IE+A+ Sbjct: 494 LKKHFADEVDCVHGVLSAQKMEEKLTLFRNGKTKILLATTVVEVGVDIPDVDVIVIEDAD 553 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP-PLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628 HFGLAQLHQLRGRVGRG + S CILLY +++N RL +L+ + DGF IAEED K R Sbjct: 554 HFGLAQLHQLRGRVGRGNKNSFCILLYDSQKITENGKKRLKILRESSDGFFIAEEDFKLR 613 Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 G+I G++QSG KF S + A ++A+ Sbjct: 614 GVGDIFGVRQSGFYKFKFLDRPFEHSFFDSASREAQ 649 >gi|119511272|ref|ZP_01630387.1| DNA helicase [Nodularia spumigena CCY9414] gi|119464063|gb|EAW44985.1| DNA helicase [Nodularia spumigena CCY9414] Length = 823 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 232/650 (35%), Positives = 374/650 (57%), Gaps = 23/650 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99 DLL+Y+P ID + I E+ VTI + + + F K + IL L D TG Sbjct: 154 DLLYYYPRDHIDYARQVNIGELQGGETVTIIANVKRCNCFTSPKNKKLSILELVLKDNTG 213 Query: 100 EITLLFFYRKTEMLKNVFFEGRK--------ITVTGKIKKLKNRIIMVHPHY--IFHNSQ 149 EI + F + EG K + G +K+ K + + +P + H Sbjct: 214 EIKITRFSAGARFASRGWQEGLKRRYPVGSILAACGLVKESKYGLTLDNPELEVLAHPGD 273 Query: 150 DVNFPLIEAV---YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206 ++ I V Y+L G+ + ++ I AL L + + K L K + + +A Sbjct: 274 AIDSLTIGRVVPIYALTEGVMATMVRQAITAALPATVHLKDPLPKGLRTKYNLMELKDAI 333 Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK-EIGIPINVEGKIAQKI 265 IH P ++ + AR RL +DE Q+ LL + Q ++ + + +G++ +K Sbjct: 334 ANIHFPDESATLQ---AARRRLVFDEFFYLQLGLLQRQHQARQIQTSAILAPKGQLVEKF 390 Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 +PF T +Q+ + DIL D+ + M R++QGDVGSGKT+VA+IA+ AA+++G QA Sbjct: 391 SEILPFELTGAQQRVLNDILTDLEKSTPMNRLIQGDVGSGKTVVAVIAILAAIQSGYQAA 450 Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +MAP +LA+QHY + + + VE++TG+ A RR+ ++ G+ +++GTHAL Sbjct: 451 LMAPTEVLAEQHYRKLVSWFNLLHLPVELLTGSTKVAKRREIHSQLVTGELPLLVGTHAL 510 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445 QD++ + +L LV++DEQHRFGV+QR L QK PHVL MTATPIPRTL LT GD+++ Sbjct: 511 IQDTVNFNQLGLVVIDEQHRFGVKQRALLQQKGDQPHVLTMTATPIPRTLALTIHGDMNV 570 Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 S+I E P GR+ I+T ++ + E + ++ +++G++ Y + P +EE ++ + RS VE Sbjct: 571 SQIDELPPGRQKIQTTMLTGKQRTEAYDLMRREIAQGRQVYIVLPLVEESEKLDLRSAVE 630 Query: 506 RFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 L E + ++HGRMS DK+ + F++ ++L++TTV+EVG+DV +A+++ Sbjct: 631 EHQKLQESIFPDFQVGLLHGRMSSADKDEAITKFRDNHTQILVSTTVVEVGVDVPNATVM 690 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623 +IENAE FGL+QLHQLRGRVGRG S C+L+ S ++ RL VL+ ++DGF I+E Sbjct: 691 LIENAERFGLSQLHQLRGRVGRGAAQSYCLLMSSSK-SADAQQRLKVLEQSQDGFFISEM 749 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 D++ R GE+LG +QSG+ F +A + +L +AR+ A+ ++ D L Sbjct: 750 DMRFRGPGEVLGTRQSGVADFTLASLVEDEEILLLARQVAEKVIEMDATL 799 >gi|152980116|ref|YP_001352039.1| ATP-dependent DNA helicase RecG [Janthinobacterium sp. Marseille] gi|151280193|gb|ABR88603.1| RecG-like helicase [Janthinobacterium sp. Marseille] Length = 743 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 250/668 (37%), Positives = 375/668 (56%), Gaps = 39/668 (5%) Query: 28 SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE-----RIVTITGYISQHSSF 82 K+I G ++ +D + + P + D +I ISE R V + G ++ Sbjct: 69 DKLIKLGLRSD---MDKVLHLPMRYEDE---TEIKSISEAGFIFGRSVQVEGVVTS-CEV 121 Query: 83 QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH 142 + RR + ++D TG++ + F +K + EG ++ G+++ MVHP+ Sbjct: 122 AFRPRRQLVVTISDDTGQLVMRFLNFYGSQVKQMA-EGNRVRARGEVRHGFFGAEMVHPN 180 Query: 143 YIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK----- 197 Y + VY GLS + +K I++A++R+ EW +D L K Sbjct: 181 YKMVVEGAPLPAALTPVYPAGEGLSQTILRKTILDAMTRI----EW--RDTLNDKLRGEL 234 Query: 198 SFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI 253 A ++HNP D + + A R+ +DELLA Q+++ + + + Sbjct: 235 DLMPFEPAVRLLHNPPPDIDESALADRSHAAWVRMKFDELLAQQLSMKRAQMARRAKGAA 294 Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313 + GK+++ L+ +PFS T +Q+ +++I D+ Q M R+LQGDVGSGKT+VA +A Sbjct: 295 VLPSIGKLSKAFLKQLPFSLTGAQQRVLEEIRADLKQSFPMQRLLQGDVGSGKTVVAALA 354 Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373 A A+++G QAV+MAP ILA QH+ I + + + V +TG++ + + +A RI Sbjct: 355 AAQAIDSGFQAVLMAPTEILADQHFRKIAGWMEPLGVNVAWLTGSLKKKEKLEAKARIEA 414 Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL----------TQKATAPHV 423 G A +IIGTHAL Q+ +Q+ KL LVIVDEQHRFGV QRL L Q+ T PH Sbjct: 415 GTAQLIIGTHALIQEDVQFAKLGLVIVDEQHRFGVGQRLVLRNKGVDNNASAQQQTIPHQ 474 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+M+ATPIPRTL +T D+++S I E P GR PI T +I NR DEVIER+ EG+ Sbjct: 475 LMMSATPIPRTLAMTYYADLEVSVIDELPPGRTPIVTRVIDQNRRDEVIERVHAAALEGR 534 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542 + YW+CP IEE + ++ + +L E + ++HGRM +K+ VMD+F G Sbjct: 535 QVYWVCPLIEESEALQLQTATDTHQTLVEALPDLQVGLVHGRMKPAEKQQVMDAFTRGEI 594 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 +L+ATTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG S C+LLY PL Sbjct: 595 HVLVATTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGSTASVCLLLYQGPLGM 654 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662 + RL +++ + DGF IA +DL+ R GE LG +QSG A E L++ AR Sbjct: 655 IAKQRLRIMRESTDGFEIARKDLEIRGPGEFLGARQSGQAMLRFADLETDQWLVDRARDL 714 Query: 663 AKHILTQD 670 A+ +L D Sbjct: 715 AQTLLRDD 722 >gi|300725972|ref|ZP_07059433.1| ATP-dependent DNA helicase RecG [Prevotella bryantii B14] gi|299776756|gb|EFI73305.1| ATP-dependent DNA helicase RecG [Prevotella bryantii B14] Length = 700 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 248/677 (36%), Positives = 396/677 (58%), Gaps = 31/677 (4%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG K LSK + + N DLL Y+P ++DR I+E++ + V I G I Sbjct: 14 GVGPKRKEILSKELGINSYN-----DLLEYYPYKYVDRSRIYTINELTSDMPFVQIKGKI 68 Query: 77 SQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 F++ R+ + +DGTG +++F R T+ + + ++ + GK R Sbjct: 69 LSFDEFEMGPRKKRIVAHFSDGTGVCDIVWF-RATQFVYKNYKVQQEYIIFGKPTLFNGR 127 Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLP--------TGLSVDLFKKIIVEALSRLPVLPE 187 HP + +++ ++ Y T S++ K ++E LS+ P+ PE Sbjct: 128 YQFAHPDIDDASKLELSQMGMQPYYITTERMKKMGLTSRSMEKLTKTLIEKLSQTPI-PE 186 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM---- 243 + L + S +AF+ IH P+ A + T ARERL ++EL Q+ +L Sbjct: 187 TLPDSLTHRLHLISRQQAFHWIHYPQNAHE---TQQARERLKFEELFYVQLNILRYVSDR 243 Query: 244 RKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 RK ++ I I G+I +N+PF T +Q+ IK+I +DM+ +M R+LQGDV Sbjct: 244 RKNYRGYIFGHI---GQIFNDFYSQNLPFPLTNAQKRVIKEIRRDMNSGKQMNRLLQGDV 300 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVAL++M A++ G QA +MAP ILA+QH + IK + I VE++TG + Sbjct: 301 GSGKTLVALMSMLIALDNGYQACMMAPTEILAEQHLQTIKDFLHGMNIRVELLTGIVKGK 360 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-AP 421 R++ LE +A G+ I++GTHA+ +D +Q+ +L ++DEQHRFGV QR KL K++ P Sbjct: 361 KRQQILEDLASGKIQILVGTHAVIEDHVQFARLGYAVIDEQHRFGVAQRAKLWGKSSFPP 420 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 H+L+MTATPIPRTL +T GD+D+S I E P GRKP++T+ +++ + ++ + E Sbjct: 421 HILVMTATPIPRTLAMTIYGDLDVSIIDELPPGRKPVQTIHKYDSQMTSLYSGIRQQIHE 480 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540 G++ Y + P I+E ++S+ +++ E + +L E F ++ +HG+M +KE M F G Sbjct: 481 GRQVYIVFPLIKESEKSDLKNLEEGYEALREVFPEFRLSKVHGKMKPAEKEEEMQKFVKG 540 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+ + L Sbjct: 541 DTQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQSYCILVTNQKL 600 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIA 659 SK + R+ ++ +T DGF IAE DLK R G++ G +QSG+ L IA ++++A Sbjct: 601 SKETRKRIDIMCDTNDGFRIAEADLKLRGPGDLEGTQQSGIAFDLKIANIAQDGQIIQLA 660 Query: 660 RKDAKHILTQDPDLTSV 676 R +A+ I+ DP+ + Sbjct: 661 RDEAQKIIDNDPNCEKI 677 >gi|221214464|ref|ZP_03587435.1| ATP-dependent DNA helicase RecG [Burkholderia multivorans CGD1] gi|221165721|gb|EED98196.1| ATP-dependent DNA helicase RecG [Burkholderia multivorans CGD1] Length = 791 Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust. Identities = 246/660 (37%), Positives = 365/660 (55%), Gaps = 25/660 (3%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D I ++ I G + + + RR + + D Sbjct: 118 TRSIDLVLHLPMRYEDETTLTPIRDLLPGGIAQTEGVVIDNE-VAYRPRRQLVVKIRDDD 176 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIE 157 GE +L F G+++ V G ++ + MVHP + D P ++ Sbjct: 177 GEQLVLRFLNFYGSQVKQMAVGQRLRVRGDVRGGFFGMEMVHPAVRVVEA-DAPLPQVLT 235 Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 VY G+S +K I AL R P+ LP IE+D L+ P++A+A I+H+P Sbjct: 236 PVYPSTAGVSQAYLRKAIENALERTPLPELLPPEIERDYLKPLGVPTLADAVRILHHPGV 295 Query: 215 AKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG--IPINVE---GKIAQKI 265 D + + PA R+ ++ELLA Q++L ++ + +P + ++ Sbjct: 296 DSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAAPAMPRRTARDTDALTTRL 355 Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 +PF T +Q + +I D++ + M R+LQGDVGSGKT+VA +A A A++AG QA Sbjct: 356 YAALPFRLTGAQARVVDEIAHDLTLPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQAA 415 Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +MAP ILA+QH ++ + + + V + G++ +R A+E A G A ++IGTHA+ Sbjct: 416 LMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTHAI 475 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLV 436 QD++++ +L LVIVDEQHRFGV QRL L KA PH L+M+ATPIPRTL Sbjct: 476 IQDTVEFARLGLVIVDEQHRFGVGQRLALRAKAANAADCAQGFQPHQLMMSATPIPRTLA 535 Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496 +T D+D+S I E P GR P+ T ++ R DEVI R++ G++ YW+CP IEE + Sbjct: 536 MTYYADLDVSTIDELPPGRTPVLTRVVGDARRDEVIARVREAALTGRQVYWVCPLIEESE 595 Query: 497 ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555 ++ VE + +L + ++HGR+S DK +VMD+F +LL+ATTVIEVG+ Sbjct: 596 TLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMDAFTRNEVQLLVATTVIEVGV 655 Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615 DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+LLY PLS RL ++ T Sbjct: 656 DVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYSGPLSIAGRERLKTMRETT 715 Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 DGF IA DL+ R GE LG +QSG A E L++ AR A ++ PD+ + Sbjct: 716 DGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLIDPARDAAARLIAAYPDVVT 775 >gi|114331545|ref|YP_747767.1| ATP-dependent DNA helicase RecG [Nitrosomonas eutropha C91] gi|114308559|gb|ABI59802.1| ATP-dependent DNA helicase RecG [Nitrosomonas eutropha C91] Length = 685 Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust. Identities = 238/642 (37%), Positives = 364/642 (56%), Gaps = 14/642 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DL+ + P + D ISE + + I G I++ + RR ++D +G + Sbjct: 27 DLVLHLPLRYEDETQLSSISEAAPGNTIQIEGVITEQEVL-ISPRRQLVYRVSDDSGVLY 85 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162 L F + + G ++ + G+++ + + MVHP + VY + Sbjct: 86 LRFLNFYASQI-TAWSPGTRLRILGEVRAGFHGMEMVHPKCRVVRDNMALATALTPVYPV 144 Query: 163 PTGLSVDLFKKIIVEALSRL---PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 GL ++I +A RL L E + + +L P+ E+ +++H P E Sbjct: 145 TAGLPQRTLIRLITQAFERLRRKQFLREILPETILSACPLPAFEESLSLLHCPPSDISME 204 Query: 220 W----TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275 + PA +R+ +DELLA QI+L Q + + ++ + + Q +L +PFS T+ Sbjct: 205 SLQQRSHPAWQRIKFDELLAQQISLRCHYHQRRNQQAPTLSQQVSLQQVLLGVLPFSLTE 264 Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 +Q + +I D++Q M R+LQGDVGSGKT+VA +A A+ G Q +MAP ILA+ Sbjct: 265 AQHKVVAEISTDLAQPYPMQRLLQGDVGSGKTVVAALAALQAIGNGYQVAVMAPTEILAE 324 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 QH+ + + I V ++G+ ++ R + L + A G +IIGTHALFQ+++Q+ +L Sbjct: 325 QHFRKLSGWLVPLGIEVGWLSGSQKKSLRSQELAKTASGATMLIIGTHALFQEAVQFKQL 384 Query: 396 ILVIVDEQHRFGVQQRLKLTQK----ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451 LVI+DEQHRFGV QRL L K ++ PH L+M+ATPIPRTL ++ D+D+S I + Sbjct: 385 GLVIIDEQHRFGVGQRLALRMKREDESSLPHQLMMSATPIPRTLSMSYFADLDVSVINQL 444 Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511 P GR P+ T +I NR +E+I R++ G++AYW+CP IEE + ++ VE + +L Sbjct: 445 PPGRLPVATRLIDNNRREEIIARIREACLAGRQAYWVCPLIEESEVLQLKTAVETYETLS 504 Query: 512 EHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 + F SIA+IHGR+ +K ++M F G +LL+ATTVIEVG+DV +AS+++IE+AE Sbjct: 505 QIFPELSIALIHGRLGSDEKSAIMAKFSQGAVQLLVATTVIEVGVDVPNASLMVIEHAER 564 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630 GL+QLHQLRGR+GRG CIL+Y PLS + RL ++ DGF IA +DL R Sbjct: 565 MGLSQLHQLRGRIGRGSATGICILMYQRPLSVVARKRLQIIFEHNDGFEIARQDLLLRGP 624 Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 GE LG +QSG+P A E LLE+AR A+ IL P+ Sbjct: 625 GEFLGTRQSGVPLLRFADLEEDIDLLEMARNVAEEILRDYPN 666 >gi|303228363|ref|ZP_07315197.1| ATP-dependent DNA helicase RecG [Veillonella atypica ACS-134-V-Col7a] gi|302516976|gb|EFL58884.1| ATP-dependent DNA helicase RecG [Veillonella atypica ACS-134-V-Col7a] Length = 680 Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust. Identities = 236/630 (37%), Positives = 363/630 (57%), Gaps = 23/630 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP----YKILLNDGT 98 +LL Y P S+ DR KI I E G + S ++ RP ++++ DGT Sbjct: 29 NLLAYFPRSYEDRR---KIYSIKELETGITAGVVGTVVSITEKRPRPRLSILEVIITDGT 85 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 G + ++ F + + KN + +G+++ GK + + M P + I Sbjct: 86 GPMKIVLFNQGYK--KNFYKKGQRLYAYGKAEFQYGSMQMNSPQIENLGPDAMPDTGIVP 143 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 +Y L G+S + + I + E + +++ + +AF +H P ++ Sbjct: 144 IYPLVDGVSQYVVRASIRNWFEAHHTMDEILPPEIMNYHASMKRYDAFKEMHFPSSSERH 203 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 E AR +LAY+EL Q L L+R + + +G + +G + ++ N+PF T QE Sbjct: 204 E---KARYQLAYEELFIMQSGLALLRNKEQCHVGPKMEPDGTLMEQYRTNLPFQLTGDQE 260 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 A+ +I QDM + M R+LQGDVGSGKT+VA +++ AVE G QAVIMAP ILA QH+ Sbjct: 261 RAVTEISQDMQDERPMQRLLQGDVGSGKTVVATLSLVKAVENGYQAVIMAPTEILATQHF 320 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I ++ +N I + ++TG+ P+ + + E +A+G +IIGTHAL QD +Q+ L LV Sbjct: 321 EGITEFCKNLPINIALLTGSTPKKEKDRIYEELANGTIQLIIGTHALIQDKVQFKNLGLV 380 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DEQHRFGV QR L K PHVL+MTATPIPRT+ L+ GD+ +S I E P GRKP+ Sbjct: 381 IIDEQHRFGVNQRAALQHKGVYPHVLIMTATPIPRTMTLSVYGDLAVSLIKEMPPGRKPV 440 Query: 459 KTVIIPINRIDEVIERLKVV----LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 KT ++ ERL+V ++ G + Y +CP +EE ++ + ++ E F L ++F Sbjct: 441 KTYVVD----SSYKERLRVFFGKEMAAGHQVYVVCPLVEESEKLDLQAAEELFLELKDYF 496 Query: 515 TSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 S + ++HGRM+ +K+ VM +F +G +LL++TTVIEVG++V +A+I+ IE AE FG Sbjct: 497 YKSFEVGLVHGRMNPKEKDEVMQAFHDGRIQLLVSTTVIEVGVNVPNATIMCIEGAERFG 556 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 L+QLHQLRGRVGRG+ + CIL+ S RL ++++T+DGF +AE+DL R G+ Sbjct: 557 LSQLHQLRGRVGRGDIQAYCILVSDSK-GDVSQERLRLMESTQDGFELAEQDLLLRGSGQ 615 Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKD 662 + G+ QSG+P +A +L AR D Sbjct: 616 LFGLAQSGLPDLRVANIIKDIDILVAARND 645 >gi|260892053|ref|YP_003238150.1| ATP-dependent DNA helicase RecG [Ammonifex degensii KC4] gi|260864194|gb|ACX51300.1| ATP-dependent DNA helicase RecG [Ammonifex degensii KC4] Length = 685 Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust. Identities = 242/676 (35%), Positives = 380/676 (56%), Gaps = 18/676 (2%) Query: 12 PLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70 P+ +GVG + + +LS++ IN DLL++ P + DR + + + + V Sbjct: 8 PVQYLKGVGPQRARWLSRLGINTVG-------DLLYHLPRRYEDRTFSRPLQTLVDGETV 60 Query: 71 TITGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 T G + + S + + L G ++F + L + G K+TVTGK+ Sbjct: 61 TARGEVLTVEESTARSGLKIIRAALRHPEGTFYAVWFNQT--YLTQILKPGVKVTVTGKV 118 Query: 130 KKLKNRI-IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188 ++L I I V I + + +N I +Y L + +I AL Sbjct: 119 RRLLGFIEIQVADFEIGEDEEGINSGRIVPIYPSTEKLPQRTLRSLIFRALEENAAELPE 178 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248 + L ++ F + A+A +H P E AR+RL +EL Q+AL R+ Sbjct: 179 LLPPHLLRQGFFTRAQALREVHFP---STLEKAEEARKRLVLEELFLLQLALGQRRRHLA 235 Query: 249 K-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 + P +G + Q+ L ++PF+ T +QE A ++I +DM M R+LQGDVG+GKT Sbjct: 236 SAQKPYPCRPDGPLVQQFLASLPFTLTPAQERAWREISRDMESPRPMHRLLQGDVGAGKT 295 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +VA +A+ AVE G Q +MAP ILA+QH+ + + I V ++TGN+ + R + Sbjct: 296 VVAALALVKAVENGLQGALMAPTEILAEQHFLNLHPLLEKIGIKVGLLTGNLKKELRWRQ 355 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 + IA G ++IGTH L Q+ + +++L LV++DEQHRFGV+QR L +K AP VL+MT Sbjct: 356 IAAIARGDIDVVIGTHTLIQEEVSFHRLGLVVIDEQHRFGVRQRTILRRKGEAPDVLVMT 415 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL LT GD+D+S I P GR+P+KT+ I + + V ++ ++G +A++ Sbjct: 416 ATPIPRTLALTLYGDLDLSVIDSLPPGRQPVKTIWIKPSALPRVYNFIRQEAAQGNQAFF 475 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 +CP IEE +E N ++ + L + F I ++HGR+ +KE VM +F++G KLL+ Sbjct: 476 VCPLIEESEELNAQAASKLAEELKKFFPEFQIGLLHGRLKLEEKERVMAAFRSGEIKLLV 535 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 T+V+EVG+DV +A++++I +A+ FGLAQLHQLRGRVGR ++ S CIL+ ++ + Sbjct: 536 TTSVVEVGVDVPNATVMVIYDADRFGLAQLHQLRGRVGRSDKPSYCILVAD-KVTPEAQA 594 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666 RL N DGF +AEEDL+ R GE G +QSG+P+ +A LL +AR++A Sbjct: 595 RLKAFTNLRDGFALAEEDLRIRGPGEFFGTRQSGLPELKVADLLRDHQLLPLAREEAWRF 654 Query: 667 LTQDPDLTSVRGQSIR 682 L +DP L+S G+ +R Sbjct: 655 LEKDPSLSSPLGRILR 670 >gi|206889688|ref|YP_002248538.1| ATP-dependent DNA helicase RecG [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741626|gb|ACI20683.1| ATP-dependent DNA helicase RecG [Thermodesulfovibrio yellowstonii DSM 11347] Length = 690 Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust. Identities = 260/671 (38%), Positives = 380/671 (56%), Gaps = 20/671 (2%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P+ +GVG K + L KI ET + L+Y PS + DR + I EI I+T Sbjct: 9 PIQYLKGVGPKKANLLKKI-----GIET-VKEALYYLPSQYEDRRNKKSIFEIKPGEIIT 62 Query: 72 ITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 G + Q + + + + +++DGTG + +F + + K+ +I Sbjct: 63 AEGSVVQINEIRTKTNLSIIEAIISDGTGFLKAKWFNQNYLKKILKEKKKLKLFGKVQID 122 Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS-RLPVLPEW 188 N + +++P Y + + + I +Y L GLS + I+ A+ +P + E Sbjct: 123 YRGNYLEILNPEYELVEQTLNSQTQEIVPIYRLTEGLSQKQMQSIMQTAVEFAIPHIEEH 182 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMR 244 + ++L+ K P++ EA +H P D E TS +R+ +DEL Q+ +LL++ Sbjct: 183 LPENLINKLKLPTLKEAIKFVHLPPNNADIKLLNEKTSDFHKRIIFDELFFLQLGILLIK 242 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 + E GI N EG + +K L N+PF T +Q+ I +IL+DM + M R+LQGDVGS Sbjct: 243 QNRICEKGISFNPEGDLLKKFLENLPFKLTSAQQKVINEILEDMKKPIPMNRLLQGDVGS 302 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKT+VA+ AM AA+E G QA +MAP ILA+QHY I + I I T + Sbjct: 303 GKTVVAVAAMLAAIECGYQAALMAPTEILAEQHYLNISSLLKGLPINTLIYTSSY----- 357 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424 K I G ++IIGTHAL Q+ I + L +V++DEQHRFGV QR L +K P L Sbjct: 358 NKHSNLICSGAVNLIIGTHALIQEDIHFKNLGIVVIDEQHRFGVIQRAMLKKKGLNPDTL 417 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 +MTATPIPRT+ LT GD+D S + E PAGRKPI T +I + + + +S G + Sbjct: 418 VMTATPIPRTMALTVYGDLDYSILDELPAGRKPILTKVIEPENKKIIYKMIAEEVSSGGQ 477 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y + P IEE + + +S + + L + F +A+IHG+MS +E +M F+NG Sbjct: 478 VYVVYPLIEESEAMDLKSATQGYEGLKKLFPQYKVALIHGKMSAKQREEIMKEFRNGDIH 537 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L+ATTVIEVG+DV +A+++II +AE FGLAQLHQLRGRVGRG S CILL + L++ Sbjct: 538 ILVATTVIEVGVDVPNATLMIIIHAERFGLAQLHQLRGRVGRGLRPSKCILLPY-KLTEE 596 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 + RL + N DGF IAEED+K R GE+ G+KQSGMP +A SLLEIAR +A Sbjct: 597 AKLRLRAIVNYSDGFKIAEEDMKIRGPGELFGVKQSGMPDLKVADLIKDQSLLEIARNEA 656 Query: 664 KHILTQDPDLT 674 + +L +D +L+ Sbjct: 657 EQLLQEDKNLS 667 >gi|312795168|ref|YP_004028090.1| ATP-dependent DNA helicase recG [Burkholderia rhizoxinica HKI 454] gi|312166943|emb|CBW73946.1| ATP-dependent DNA helicase recG (EC 3.6.1.-) [Burkholderia rhizoxinica HKI 454] Length = 753 Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust. Identities = 241/654 (36%), Positives = 359/654 (54%), Gaps = 24/654 (3%) Query: 40 RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99 R IDL+ + P + D I ++ + G + + + RR + L D G Sbjct: 82 RDIDLVLHLPMRYEDETTLTPIGQLLPGMTAQVQGEVVDNE-IAYRPRRQMLVRLRDEHG 140 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIEA 158 ++ +L F G ++ V G ++ + MVHP Y D P + Sbjct: 141 DVLMLRFLNFWGSQARQLASGARLRVRGDVRGGFFGMEMVHPAYRVVED-DTPLPDALTP 199 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215 VYS G+S ++ I AL R P+ LP I L PS+A+A +H+PR Sbjct: 200 VYSSTAGVSQAYLRRAIDSALQRTPLPELLPPQIADAFLAPLGVPSLADAVRTLHHPRAD 259 Query: 216 KD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-----EGKIAQKIL 266 D E T PA R+ ++ELLA Q++L + + + + ++ Sbjct: 260 ADEAALMERTHPAWLRIKFEELLAQQLSLKRAHDERRLRAAPAMARRPAADRDALVTRLH 319 Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 +PF T +Q+ A + I D++ + M R+LQGDVGSGKT+VA +A A A++AG QA + Sbjct: 320 AALPFQLTGAQQRASEQIAADLAAAHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQAAL 379 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 MAP +LA+QH ++ + + + + G++ +R ALE +A G A ++IGTHA+ Sbjct: 380 MAPTELLAEQHARKLRGWLEPLGVRTAWLAGSLKARDKRAALEAVASGDAPLVIGTHAMI 439 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--------PHVLLMTATPIPRTLVLT 438 Q+++++ +L LVIVDEQHRFGV+QRL L KA A PH L+M+ATPIPRTL +T Sbjct: 440 QEAVKFARLGLVIVDEQHRFGVEQRLALRAKAQAEAAVSGFQPHQLMMSATPIPRTLAMT 499 Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498 D+D+S I E P GR P+ T ++ R DEVI R++ G++ YW+CP IEE + Sbjct: 500 YYADLDVSTIDELPPGRTPVLTKLVSDARRDEVIARVREAALAGRQVYWVCPLIEESEAL 559 Query: 499 NFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557 ++ V+ + +L + ++HGR++ DK VM F LL+ATTVIEVG+DV Sbjct: 560 QLQTAVDTYETLVAALPQLQVGLVHGRLAAADKADVMARFTRNEIHLLVATTVIEVGVDV 619 Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617 +AS++++E+AE FGLAQLHQLRGRVGRG + S C+L+Y PLS + RL ++ T DG Sbjct: 620 PNASLMVVEHAERFGLAQLHQLRGRVGRGSQSSVCLLMYASPLSLAARERLRTMRETTDG 679 Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671 F IA DL+ R GE LG +QSG A E L+E AR+ A+ +L + P Sbjct: 680 FEIARRDLEIRGPGEFLGARQSGAAMLRFADIEQDAWLIEPARRAAERLLGEYP 733 >gi|299065737|emb|CBJ36913.1| ATP-dependent DNA helicase [Ralstonia solanacearum CMR15] Length = 730 Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust. Identities = 248/666 (37%), Positives = 369/666 (55%), Gaps = 42/666 (6%) Query: 40 RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ------HSSFQLQKRRPYKIL 93 R +DL+ + P + D + I+E TG+ +Q + + RR + Sbjct: 55 RDVDLVLHLPMRYEDET---ALLTIAEAVARANTGWAAQVDGVVTRNEVAFRPRRQLVVH 111 Query: 94 LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153 + D +GE+ L F +K + EG ++ V G+++ MVHP + + D Sbjct: 112 IADDSGELVLRFLNFYGSQVKQMA-EGARLRVRGEVRGGFFGAEMVHP-AVRAVAPDEPL 169 Query: 154 P-LIEAVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNII 209 P + VY G++ +K I+ AL R P+ LP+ + + L + AEA ++ Sbjct: 170 PDRLTPVYPSTAGVAQAYLRKAILNALGRTPLPETLPDSLLRGPLASLKLMAPAEAVRLL 229 Query: 210 HNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPI----NVEGK 260 H P D E T PA R+ +DELLA Q++L R Q + P+ +G Sbjct: 230 HQPTPDVDEYSLVERTHPAWLRIKFDELLAQQLSL--KRAQAARRTRSAPVLRAGGADGL 287 Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320 +A + + +PF T +Q ++I D+++ M R+LQGDVGSGKT++A +A A++A Sbjct: 288 LA-RFMAALPFKLTGAQARVWEEIRVDLARPYPMQRLLQGDVGSGKTVIAALAACQAIDA 346 Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380 G QA +MAP +LA+QHY + + + + + G++ + + +A R+A G A ++I Sbjct: 347 GRQAALMAPTELLAEQHYRKLSAWLAPLGVDIVWLAGSLKRKQKDEAAARVAAGTAQLVI 406 Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------------PHVLLMTA 428 GTHAL QD++ + +L L +VDEQHRFGV QRL L KA PH L+M+A Sbjct: 407 GTHALIQDTVTFARLGLAVVDEQHRFGVAQRLALRGKAGGTDTPIAETAQLVPHQLMMSA 466 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488 TPIPRTL +T D+D+S I E P GR P+ T ++ R DEVIER+ EG++ YW+ Sbjct: 467 TPIPRTLAMTYYADLDVSAIDELPPGRTPVVTRLVNDARRDEVIERIHAAAREGRQVYWV 526 Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 CP IEE + ++ VE F +L + + ++HGR+ DK +VM +F G +L+A Sbjct: 527 CPLIEESEALQLQTAVETFETLSQSLAGLKVGLVHGRLPSADKAAVMSAFAGGELHVLVA 586 Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607 TTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S CILLY PLS + R Sbjct: 587 TTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCILLYQAPLSPTAKQR 646 Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHI 666 L ++ T DGF IA DL R GE LG +QSG A HD+ ++E A+ A+ + Sbjct: 647 LQTMRETTDGFEIARRDLDIRGPGEFLGARQSGEAMLRFADLN-HDAWMVEFAQGAAEQM 705 Query: 667 LTQDPD 672 L + PD Sbjct: 706 LARFPD 711 >gi|82702013|ref|YP_411579.1| ATP-dependent DNA helicase RecG [Nitrosospira multiformis ATCC 25196] gi|82410078|gb|ABB74187.1| ATP-dependent DNA helicase RecG [Nitrosospira multiformis ATCC 25196] Length = 692 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 237/651 (36%), Positives = 365/651 (56%), Gaps = 27/651 (4%) Query: 44 LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITL 103 L+ + P + D + IS++ +R V + G I + S + RR + DGTG + + Sbjct: 28 LILHLPFRYEDETHLYPISDVPADRTVQVEGTIIR-SEVMYRPRRQLVCQVEDGTGVLFM 86 Query: 104 LFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA---VY 160 F +K + G ++ + G+ + + MVHP N PL +A +Y Sbjct: 87 RFLNFYGSQIK-AYSVGTRVRLLGEARPGFFGVEMVHPKCRILRG---NEPLPDALTPIY 142 Query: 161 SLPTGLSVDLFKKIIVEAL------SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP-- 212 GL + +K+I L ++ L E + + + ++ ++ +H P Sbjct: 143 PSTAGLPSEALRKLISRVLQTGEGGNQEGTLCETLPESIRKRCQLQGFKDSVLFLHQPPP 202 Query: 213 --RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270 A E T PA +R+ +DELLA Q+++ + +Q + + + + + +L+ +P Sbjct: 203 NASPALLRERTHPAWQRIKFDELLAQQLSMRVHYQQRRNGSAPVLIAKNDLTRALLKLLP 262 Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T++Q+ A +I +D+++ + M R+LQGDVGSGKT+VA +A+ ++E QA +MAP Sbjct: 263 FDLTQAQKKAFAEISRDLTEPHPMQRLLQGDVGSGKTIVATLAVLQSIENNFQAALMAPT 322 Query: 331 GILAQQHYE----FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 ILA+QHY ++ + + + + GN + R L IA G A + IGTHALF Sbjct: 323 EILAEQHYRKLSTWLAPLLEPRGLRIAWLGGNQKKKERETTLADIAAGNALLAIGTHALF 382 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGD 442 Q+ +++ +L LV++DEQHRFGV QRL L +K PH L+M+ATPIPRTL ++ D Sbjct: 383 QNQVEFDRLGLVVIDEQHRFGVHQRLALREKGAGAYAMPHQLMMSATPIPRTLSMSYYAD 442 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502 +D+S I E P GR P+ T ++ R DEV R++ EGK+AYW+CP I+E + ++ Sbjct: 443 LDVSVIDEMPPGRAPVVTKLVADARRDEVTARVREACREGKQAYWVCPLIQESEALQLKT 502 Query: 503 VVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 +E L F I ++HGR+S +K VM++F G LL+ATTVIEVG+DV +AS Sbjct: 503 ALETHQGLTGTFPELRIGLVHGRLSFQEKSDVMEAFARGEIHLLVATTVIEVGVDVPNAS 562 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621 +++IE+AE GLAQLHQLRGR+GRG S CIL+Y PPLS N+ RL ++ DGF IA Sbjct: 563 LMVIEHAERMGLAQLHQLRGRIGRGAAGSVCILMYQPPLSPNARERLKIIFENTDGFEIA 622 Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 +DL+ R GE LG +QSG+P A E LL+ AR A +L P+ Sbjct: 623 RQDLQLRGPGEFLGARQSGLPMLRFADLERDKDLLDTARTIAVELLRDYPE 673 >gi|282855835|ref|ZP_06265137.1| ATP-dependent DNA helicase RecG [Pyramidobacter piscolens W5455] gi|282586349|gb|EFB91615.1| ATP-dependent DNA helicase RecG [Pyramidobacter piscolens W5455] Length = 694 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 237/675 (35%), Positives = 386/675 (57%), Gaps = 31/675 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS------ 65 P++ RG+G+ +L L ++ G A DL+++ P + DR I +++ Sbjct: 11 PVTAIRGIGEAKALLLQRL---GIATAE---DLVYFFPRRYEDRRQVVTIQDLAPGGPPQ 64 Query: 66 --EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123 R+V+I +++ S+ ++Q R + L+DG L+F R L + EG ++ Sbjct: 65 AFRARVVSIEQRVAR-SNRRMQITR---VCLSDGKNVAWALWFNRWN--LSRILREGMEL 118 Query: 124 TVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182 + G ++ + +++P + I S + I VYS GL+ +++I L L Sbjct: 119 ALYGSLEPRRPVPELLNPEFEILDGSDPRSVGRIVPVYSATAGLNEKWLRRVIDTVLETL 178 Query: 183 -PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 P + + + +++K F A A +H P F AR+RL ++E Q+ L Sbjct: 179 APTIADILPPPIVEKFHFIDAASAVRQMHQPTDEALFR---AARQRLVFEEFFLLQVGLA 235 Query: 242 LMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L ++ E P + + + +K L +PF T Q ++I DM + M R+LQG Sbjct: 236 LRHRRGCLEKKAPALAGQADLTRKFLAELPFELTDDQRRVAQEIADDMRRSVPMNRLLQG 295 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA++A+ A+++G QA +MAP +LAQQH + ++ + V ++TG + Sbjct: 296 DVGSGKTVVAVMALLQALDSGVQAAMMAPTAVLAQQHALTLNRWLAPLGVEVGLLTGGVA 355 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK--A 418 A ++K E+++ G +++GTHAL Q+++ + +L L+++DEQHRFGV QR L K A Sbjct: 356 PAEKKKIHEQLSDGTLRVVVGTHALIQEAVSFKRLGLIVIDEQHRFGVLQRKALNSKAGA 415 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 APH L+MTATPIPRTL L+ GD+ +S I + P+GR+PIK+V I NR+ +++ L+ Sbjct: 416 EAPHTLVMTATPIPRTLALSVYGDLAVSTIRQLPSGRQPIKSVWIGDNRLPKMLRFLEGE 475 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 ++ G++ YW+CP IEE + + + RF L F + +A++HGRM + +K +VM F Sbjct: 476 MAAGRQIYWVCPLIEESENFDAAPLESRFEKLRREFPNRRLAMLHGRMGEKEKNAVMTEF 535 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 G LL +TTVIEVG+DV +A+++++ENAE FGL+QLHQLRGRVGRG S CI LY Sbjct: 536 SAGHIDLLASTTVIEVGVDVPNATVMVVENAERFGLSQLHQLRGRVGRGPTKSWCI-LYA 594 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 P + + RL + DGF IAE D++ R GE G++Q G+ F +A +++E Sbjct: 595 DPKNSEAEHRLDQFCSLSDGFAIAEADMQLRGPGEFCGVRQHGLTDFRVADLIRDGAVME 654 Query: 658 IARKDAKHILTQ-DP 671 +AR++A ++ Q DP Sbjct: 655 VARQEAFALIAQGDP 669 >gi|164688647|ref|ZP_02212675.1| hypothetical protein CLOBAR_02292 [Clostridium bartlettii DSM 16795] gi|164603060|gb|EDQ96525.1| hypothetical protein CLOBAR_02292 [Clostridium bartlettii DSM 16795] Length = 686 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 242/674 (35%), Positives = 390/674 (57%), Gaps = 20/674 (2%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 +N L + +G+G K + L+K+ N DLL+Y P S+ DR KI ++ Sbjct: 1 MNSLDKNIQFVKGIGPKKASKLNKL------NIFTIKDLLYYFPRSYEDRSNIKKIWQLE 54 Query: 66 EERIVTITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124 + G IS+ S + + + + K L D TG + ++FF + + L VF +G + Sbjct: 55 HDEKACTKGIISEVKSHEAKNKIKVTKFTLRDETGFLNVVFFNQ--DYLTKVFKKGDSVI 112 Query: 125 VTGKIKKLKNRIIMVHPHYI-FHNSQDVNFPLIEAVYSLPTGLS-VDLFKKIIVEALSRL 182 V GKIK+ + M P F N+Q LI +Y L G++ D+ I + Sbjct: 113 VYGKIKREGGFLEMNSPQIEHFTNAQTSTGKLI-PIYPLTYGVTNKDIINTIKNIYTNEK 171 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 + E++ KD++ K SI A +H P+ D + A R+ ++E L QI L Sbjct: 172 VSIQEYLPKDIINKYKLCSIDFAVKNLHMPQ---DKQSLKIALYRMIFEEFLILQIGLFY 228 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 + GI + K+ I++++PF+ T +Q A+ +++ DM +N M R++QGDV Sbjct: 229 FKSGIDNSEGIKFEKKEKL-NDIIKSLPFNLTNAQSRALNEVIDDMVSENMMNRLVQGDV 287 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKT+VA++ +A +V G Q +MAP ILA+QHYE + + I ++++ G++ + Sbjct: 288 GSGKTIVAVLVLALSVLNGYQGALMAPTEILARQHYESLTQTLAPFDINIDLLVGSLTKK 347 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 + K LE+I + + I+IGTHAL +D++++ L +V+ DEQHRFGV+QR KL+ K P Sbjct: 348 QKEKVLEKIKNHETDILIGTHALIEDNVEFDNLGVVVTDEQHRFGVRQRAKLSTKGNNPD 407 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSE 481 +L+MTATPIPRTL L GD+DIS I E P GR+PI T + D + ++ + + Sbjct: 408 ILVMTATPIPRTLALILYGDLDISIIDELPPGRQPIDTRAFESKKRDFIYSNFVRDEIEK 467 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKN 539 G++ Y +CP +EE + ++ + + L E + S ++ ++HG+M K+ +M+ FKN Sbjct: 468 GRQVYIVCPLVEESEAIEAKAAEDLRDELKEKYFSDLNVEVLHGKMKPSLKDKIMEDFKN 527 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 ++L++TTVIEVG++V +A+++IIENAE FGLAQLHQLRGRVGRG S CIL+Y Sbjct: 528 NKIQILVSTTVIEVGVNVPNATLMIIENAERFGLAQLHQLRGRVGRGSHKSHCILIYSSK 587 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 + R+ +++ T DGF I+E+DL+ R GE G +Q G+P+ +A H +L++A Sbjct: 588 -TNVCKERMEIMEETNDGFKISEKDLEIRGPGEFFGTRQHGIPELKVANIFKHIKILKLA 646 Query: 660 RKDAKHILTQDPDL 673 ++++K IL QD +L Sbjct: 647 QEESKFILKQDRNL 660 >gi|78222986|ref|YP_384733.1| ATP-dependent DNA helicase RecG [Geobacter metallireducens GS-15] gi|78194241|gb|ABB32008.1| ATP-dependent DNA helicase RecG [Geobacter metallireducens GS-15] Length = 767 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 248/699 (35%), Positives = 383/699 (54%), Gaps = 32/699 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L P+ +GVG K + L G D L+ P+ + DR I+ + Sbjct: 65 LETPIQFIKGVGPKLAETL------GKKGIATVEDALYLLPNRYEDRRQVVPIARLCPGV 118 Query: 69 IVTITGYISQHSSFQLQK-RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 +G + + RR +++++ D +G I+ +F LK + EGR+ TG Sbjct: 119 TSVFSGEVITADVVSTKGGRRFFEVVVRDASGTISFKWFNFNPAFLKKTWKEGRRGIFTG 178 Query: 128 KIKKLKNRIIMVHPHYIFHNSQD----------VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 + + + + HP + + V+F + VY L GL +K++ Sbjct: 179 LVSQFGLQREVHHPDAEWLAEGETVASVMARDPVSFGRVVPVYPLTEGLHQKTLRKVMKG 238 Query: 178 ALSRLPVLPE-WIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDE 232 + + E + ++ ++ +++A +H P D E PA L +DE Sbjct: 239 VVDQYASCVESALPLEVAGRQGLLPLSDALRRVHFPDSDADPRGLEEGKDPANRTLVFDE 298 Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292 ++ L + ++ E GI V + +L+ +PFS T +Q + +I +DM + Sbjct: 299 FFFLELGLAMKKRGVTLESGIAFTVSHTYTKPLLKLLPFSLTGAQRRVLAEIKEDMMAPH 358 Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352 M R++QGDVG GKTLVAL+A AVE G Q IMAP ILA+QHY I ++ + V Sbjct: 359 PMHRLVQGDVGCGKTLVALMAALVAVENGYQVAIMAPTEILAEQHYLNIHRWCDELGVSV 418 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 ++T ++ ++ ALER+A G+A I+IGTHA+ QD +++++L L IVDEQHRFGV QR Sbjct: 419 TLVTSSLKGKAKKDALERVAGGEAQIVIGTHAVIQDKVEFHRLGLGIVDEQHRFGVLQRG 478 Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 L +K P +L+MTATPIPRTL +T GD+ +S I E P GR PI+T I +R +V Sbjct: 479 LLRKKGENPDILVMTATPIPRTLAMTVFGDLSLSVIDELPPGRTPIETRICFESRRKQVY 538 Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI------AIIHGRMS 526 ++ +++G +AY I P +EE ++S+ ++ + + EH + I I+HGRM Sbjct: 539 GIIRDEVTKGHQAYVIYPLVEESEKSDLKAATQ----MAEHLANDIFPELRLGILHGRMK 594 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 +KE+VM SFK +L+ATTVIEVGIDV +A++++IE+AE FGL+QLHQLRGRVGRG Sbjct: 595 PEEKEAVMRSFKAREIDILVATTVIEVGIDVPNATVMVIEHAERFGLSQLHQLRGRVGRG 654 Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646 E S CIL+ LS+++ RL V+++T DGF IAE DL+ R G+ LG +Q+G+P F + Sbjct: 655 SEKSRCILMAGERLSEDAEKRLRVMESTTDGFRIAEADLEIRGPGDFLGTRQAGIPDFRV 714 Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685 A +LE AR++A + DP+L R +R L Sbjct: 715 ANILRDGRILEEARQEAFAVAEVDPELRLPRHDKLRTEL 753 >gi|83747287|ref|ZP_00944329.1| ATP-dependent DNA helicase recG [Ralstonia solanacearum UW551] gi|83726111|gb|EAP73247.1| ATP-dependent DNA helicase recG [Ralstonia solanacearum UW551] Length = 730 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 249/665 (37%), Positives = 371/665 (55%), Gaps = 44/665 (6%) Query: 42 IDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ------HSSFQLQKRRPYKILLN 95 +DL+ + P + D + I+E TG+ +Q + L+ RR + + Sbjct: 57 VDLVLHLPMRYEDET---TLLTIAEAIARANTGWAAQVEGAVTRNEVALRPRRQLVVHIA 113 Query: 96 DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP- 154 D +GE+ L F +K + EG ++ V G+++ MVHP + + D P Sbjct: 114 DDSGELVLRFLNFYGSQVKQMA-EGVRLRVRGEVRGGFFGAEMVHP-TVRAVAPDEPLPD 171 Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP----SIAEAFNIIH 210 + VY G++ +K I+ AL R P LPE + L++ P + AEA ++H Sbjct: 172 RLTPVYPSTAGVAQAYLRKAILNALGRTP-LPETLPDSLMRGPLAPLKLMAPAEAVRLLH 230 Query: 211 NPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPI----NVEGKI 261 P D E T PA R+ +DELLA Q++L R Q + P+ +G + Sbjct: 231 QPTPDVDEHSLVERTHPAWLRIKFDELLAQQLSL--KRAQAARRTRSAPVLRAGGAQGLL 288 Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321 A + + +PF T +Q ++I D+++ M R+LQGDVGSGKT++A +A A++AG Sbjct: 289 A-RFMAALPFKLTGAQGRVWEEIRADLARPYPMQRLLQGDVGSGKTVIAALAACQAIDAG 347 Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 QA +MAP +LA+QHY + + + + + + G++ + + +A R+A G A ++IG Sbjct: 348 WQAALMAPTELLAEQHYRKLSAWLEPLGVDIVWLAGSLKRKQKDEAAARVAAGAAQLVIG 407 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------------PHVLLMTAT 429 THAL QD++ + +L L +VDEQHRFGV QRL L KA PH L+M+AT Sbjct: 408 THALIQDTVTFARLGLAVVDEQHRFGVAQRLALRGKAGGADAPVAETAQPVPHQLMMSAT 467 Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489 PIPRTL +T D+D+S I E P GR P+ T ++ R DEVIER+ EG++ YW+C Sbjct: 468 PIPRTLAMTYYADLDVSAIDELPPGRTPVVTRLVNDARRDEVIERIHAAAREGRQVYWVC 527 Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548 P IEE + ++ VE F +L + + ++HGR+ DK +VM +F G +L+AT Sbjct: 528 PLIEESEALQLQTAVETFETLSQSLAGLKVGLVHGRLPSADKAAVMSAFAGGELHVLVAT 587 Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608 TVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S CILLY PLS + RL Sbjct: 588 TVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCILLYQAPLSPTAKQRL 647 Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHIL 667 ++ T DGF IA DL R GE LG +QSG A HD+ ++E A+ A+ +L Sbjct: 648 QTMRETTDGFEIARRDLDIRGPGEFLGARQSGEAMLRFADLN-HDAWMVEFAQGAAEQML 706 Query: 668 TQDPD 672 + P+ Sbjct: 707 ARFPE 711 >gi|225023458|ref|ZP_03712650.1| hypothetical protein EIKCOROL_00316 [Eikenella corrodens ATCC 23834] gi|224943807|gb|EEG25016.1| hypothetical protein EIKCOROL_00316 [Eikenella corrodens ATCC 23834] Length = 533 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 211/515 (40%), Positives = 318/515 (61%), Gaps = 6/515 (1%) Query: 164 TGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS- 222 +GLS ++II +AL + L + + + LL + P +AE+ +++H P S Sbjct: 2 SGLSQPTLRRIIRQALEQTD-LADTLPESLLAQLKLPPLAESLHLLHAPPPEYSIGQLSD 60 Query: 223 ---PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 PA +RL +DELLA Q+++ L R +P+ +G +A+ +++++PF+ T +Q+ Sbjct: 61 GSLPAWQRLKFDELLAQQLSMRLARAHRLSGQAMPLVGDGSLAKTLVQSLPFALTAAQDR 120 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 + +I QD++Q + M R+LQGDVGSGKT+VA ++ AA+EAG Q +MAP ILA+QH+ Sbjct: 121 VLAEIRQDLAQPHPMHRLLQGDVGSGKTIVAALSALAAIEAGAQVAVMAPTEILAEQHHI 180 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 +++ + I V ++G++ + + +A +A G+ + +GTHALFQD + + L LVI Sbjct: 181 KFRQWLEPLGISVAWLSGSLKKKEKDQAKAALADGRIRLAVGTHALFQDDVSFQNLGLVI 240 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 VDEQHRFGV QRL L K H L+M+ATPIPRTL ++ D+D+S I E P GR PIK Sbjct: 241 VDEQHRFGVAQRLALKNKGCDVHQLMMSATPIPRTLAMSFFADLDVSIIDELPPGRTPIK 300 Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518 T ++ R EV + +G++AYW+CP IEE + ++ + L +I Sbjct: 301 TRLVNNIRRHEVEGFVLATCKKGQQAYWVCPLIEESEALQLQTATDTLAELQAALPELTI 360 Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578 ++HGRM +K +VM F G +L+ATTVIEVG+DV +A++++IE+AE GL+QLHQ Sbjct: 361 GLVHGRMKSAEKATVMAEFAAGRIHVLVATTVIEVGVDVPNAALMVIEHAERMGLSQLHQ 420 Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638 LRGRVGRG +SSC+LL+ PL + RL V+ DGF IA +DL R GE LG +Q Sbjct: 421 LRGRVGRGAAVSSCVLLFAEPLGDTAKARLKVIYENTDGFEIARQDLNIRGPGEFLGARQ 480 Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 SG+P A E LLE AR+ A ++ + PD+ Sbjct: 481 SGLPLLRFADLEQDLPLLEAARRIAPELIARHPDI 515 >gi|78212756|ref|YP_381535.1| ATP-dependent DNA helicase RecG [Synechococcus sp. CC9605] gi|78197215|gb|ABB34980.1| ATP-dependent DNA helicase RecG [Synechococcus sp. CC9605] Length = 812 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 235/691 (34%), Positives = 382/691 (55%), Gaps = 41/691 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L +P++ RGVG K++ L+ I DLL Y+P +D +I + Sbjct: 113 LDSPITQIRGVGPKFAARLASI------GLLLVRDLLRYYPRDHVDYSAMRRIEALVSGE 166 Query: 69 IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRK--- 122 TI I + + F + I+ L D TG + + F + +G++ Sbjct: 167 TATIVATIRRCNGFVSPRNTNLAIIELQLQDPTGRLKVSRFLAGKRFSSPAYLKGQQRLY 226 Query: 123 -----ITVTGKIKKLKNRIIMVHP-----HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFK 172 + V+G +K I P + + + VY L G+ D F+ Sbjct: 227 PVGATVAVSGLVKDGPYGITFQDPLIEVLDSPSSPVKSPSIGRLLPVYPLTEGVGADRFR 286 Query: 173 KIIVEALSRLPVLPEWIEK--DLLQKK-SFPSIAEAFNIIHNPRKAKDFEWTSPARERLA 229 +I + L P+ W + LLQ++ P+++++ +H P KD E R RL Sbjct: 287 SLIDQVL---PLAASWPDPLPALLQRQFQLPALSDSLQALHAP---KDRESLDQGRRRLV 340 Query: 230 YDELLAGQIALLLMRKQFKKEIGIPINVEGK---IAQKILRNIPFSPTKSQESAIKDILQ 286 +DE L Q+ LL R+ + G ++++ + + + +PF T +Q+ ++I Sbjct: 341 FDEFLLMQLGLLRRRQALRSRTGPDLDLQSSSSGLVGEFMDLLPFRFTAAQQRVFQEIEV 400 Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346 D+++ M R++QGDVGSGKT+VA+ A+ + + +G Q +MAP +LA+QHY + ++ Sbjct: 401 DLARSEPMARLVQGDVGSGKTVVAIAALLSTIASGWQGALMAPTEVLAEQHYRNLCQWLP 460 Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 + V ++TG+ P+ RR+ L+ +A+G +++GTHAL +D + + +L LV+VDEQHRF Sbjct: 461 QLHVSVALLTGSTPRPRRRELLDDLANGSLKVLVGTHALLEDPVVFNRLGLVVVDEQHRF 520 Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466 GV QR +L K PH+L MTATPIPRTL L+ GD+D+S+I E P GR PI+T ++ Sbjct: 521 GVHQRDRLLNKGLQPHLLTMTATPIPRTLALSMHGDLDVSQIDELPPGRTPIRTRMLTAA 580 Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGR 524 + ++ E ++ + G++AY + P ++E ++ RS VE L +A+ +HGR Sbjct: 581 KREKAYELIREEVQLGQRAYVVLPLVDESEKLELRSAVEVHAELASEVFPDLAVGLLHGR 640 Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584 +S DK++V+ F G ++L++TTV+EVG+DV +AS+++I++AE FGLAQLHQLRGRVG Sbjct: 641 LSSADKQAVLTDFSAGKTQVLVSTTVVEVGVDVPEASVMVIDHAERFGLAQLHQLRGRVG 700 Query: 585 RGEEISSCILLYHP--PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642 RG S C+L+ PL++ RL VL + DGF IAE DL+ R G++LG +QSG+P Sbjct: 701 RGAAASHCLLINGSSNPLARQ---RLDVLVRSTDGFEIAEMDLRLRGPGQVLGTRQSGLP 757 Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 +A ++LE AR A+ +L DP+L Sbjct: 758 DLALASLADDGAVLEDARTAAQELLKTDPEL 788 >gi|33240278|ref|NP_875220.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237805|gb|AAP99872.1| RecG-like helicase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 841 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 252/702 (35%), Positives = 394/702 (56%), Gaps = 39/702 (5%) Query: 11 APLSTFRGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRPKISEISEERI 69 +PL +GVG +K+ C A I DLLF++P ++D +I + Sbjct: 144 SPLGEVKGVG-------TKMCECFAALNLFVIKDLLFHYPRDYVDYSSLKRIFSLVPGET 196 Query: 70 VTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFY-----RKTEMLK---NVFF 118 TI I + +S+ + + IL L D TG I + F+ K LK +++ Sbjct: 197 TTIIATIRRSNSYTSPRNQNLSILELHLEDMTGRIKISKFFIGRRFSKRSFLKKQESLYP 256 Query: 119 EGRKITVTGKIK------KLKNRIIMVHPH-YIFHNSQDVNFPLIEAVYSLPTGLSVDLF 171 +G + V+G +K + +I V H SQ + I +Y L GL D Sbjct: 257 KGTIVAVSGLVKGNSYGKSFNDPLIEVLEHKQALLKSQTIG--RILPIYQLTDGLKADRL 314 Query: 172 KKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231 ++I+ + L + + + + S EA IH PR E+ A+ RL +D Sbjct: 315 RQIVHSVIPLALDLEDPLPVNTRESLSLLDKGEAIKQIHRPRNQ---EYLKKAKRRLVFD 371 Query: 232 ELLAGQIALLLMRKQFKK--EIGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDILQDM 288 E L Q+ LL R + K + IN E + ++ L+ +PF+ T SQ+ + I D+ Sbjct: 372 EFLFLQLGLLKRRLELGKCKAPSLFINKEREGFTEQFLKLLPFALTNSQQQVLTQIESDI 431 Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348 + M R++QGDVG GKT+VA+ A+ AVE+G Q MAP +LAQQHY + K+ Sbjct: 432 AMSKPMSRLVQGDVGCGKTVVAIAALLRAVESGWQGAFMAPTEVLAQQHYLTLCKWLPQL 491 Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408 + VE++TG+ R++ +++G II+GTHAL ++S+ + +L LV+VDEQHRFGV Sbjct: 492 HVTVELLTGSTAAKERKRIFADLSNGNLKIIVGTHALIEESVSFRRLGLVVVDEQHRFGV 551 Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468 QR L K PH+L MTATPIPRTL L+ GD+D+S+I E P GR PI+T ++P + Sbjct: 552 NQRNLLLNKGLHPHLLTMTATPIPRTLALSIHGDLDVSQINELPPGRTPIETQLMPSSER 611 Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMS 526 + E +K L G +AY + P ++E ++ RS ++ ++ L S + ++HGRM Sbjct: 612 YQAYEAIKEQLDIGSQAYVVLPLVDESEKLELRSAIDVYHELSSEILSEYKVGLLHGRMH 671 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 +K+ +++ F N ++L++TTV+EVG+DV +A++++I++A+ FGLAQLHQLRGRVGRG Sbjct: 672 SSEKKGIINKFVNKEIEVLVSTTVVEVGVDVPEATMMVIDHADRFGLAQLHQLRGRVGRG 731 Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646 + S CIL+ S S RL VL N+ DGF I+E DL+ R G++LG +QSG+P F + Sbjct: 732 TKDSKCILI-DTAKSLASKNRLEVLVNSHDGFEISEIDLRLRGPGQVLGTRQSGLPDFAL 790 Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLY 688 A +++LE AR++A+ IL DPDL ++ + ++I+L Y Sbjct: 791 ANLVNDETILESAREEAEKILKSDPDL--IQNKLLKIMLDDY 830 >gi|297544771|ref|YP_003677073.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842546|gb|ADH61062.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 681 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 255/675 (37%), Positives = 392/675 (58%), Gaps = 24/675 (3%) Query: 8 PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67 PL + +GVG K + L K+ DLLFY P + +R KI +++ Sbjct: 2 PLNLDIQYVKGVGPKRAKLLKKL------GIQTVEDLLFYFPKDYENRSSILKIEDLTVG 55 Query: 68 RIVTITGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 T GYI S +++ R K+ + DGTG + L+++ + +KN G + + Sbjct: 56 EKQTFKGYIV-GSPREIKTSRVIITKVPVKDGTGAVELVWYNQ--PYIKNNLKIGEEYII 112 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-L 182 GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ AL + Sbjct: 113 NGKLRFKYGQLIVENP--VIEKSEDFKLNTGRIVPIYGLTEGLTQNAIRKIMFNALKEYV 170 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 + E+ +++ L +K I A I+ P+ E A+ R Y EL Q+AL L Sbjct: 171 QEVEEFFDEEFLSEKRLMDIKSALININFPQNEAYLEQ---AKYRFKYQELFLLQMALFL 227 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 M+ K++ GI E + + +PF T++Q +K+I+ DM+ M R++QGDV Sbjct: 228 MKGSAKEKKGIKF--ERVDLKPFIMGLPFKLTQAQVKVLKEIIADMNSHKVMNRLVQGDV 285 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + +++G++ + Sbjct: 286 GSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYSTLKELFKNTDIKIGLLSGSLSPS 345 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 ++++ LE+I G II+GTHAL +D + + L L I DEQHRFGV+QR LTQK P Sbjct: 346 NKKEVLEKIKKGDYDIIVGTHALIEDDVVFNNLGLCITDEQHRFGVRQRALLTQKGKNPD 405 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E + +G Sbjct: 406 VLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKKG 465 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNG 540 ++ Y +CP IEE + + S + +++ + + ++HG+M+D +KE VM+ F NG Sbjct: 466 RQVYVVCPLIEESDKISAMSAEIVYREIYKDAFKEAKVGLLHGKMADSEKEKVMEEFVNG 525 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L++TTVIEVG++V +A+++IIENAE FGLAQLHQLRGRVGR E S CIL+ + Sbjct: 526 KIDILVSTTVIEVGVNVPNATVMIIENAERFGLAQLHQLRGRVGRSEFQSYCILISYSN- 584 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S + RL VL T DGF IAE+DL+ R GE LG++Q G+P+F IA +L+I + Sbjct: 585 SDVAKKRLGVLAQTSDGFKIAEKDLEIRGPGEFLGLRQHGLPEFKIANIVEDIDILKIVQ 644 Query: 661 KDAKHILTQDPDLTS 675 KD + +L +DP L + Sbjct: 645 KDVEELLKKDPKLEN 659 >gi|17547430|ref|NP_520832.1| ATP-dependent DNA helicase [Ralstonia solanacearum GMI1000] gi|17429733|emb|CAD16418.1| probable atp-dependent dna helicase protein [Ralstonia solanacearum GMI1000] Length = 671 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 245/634 (38%), Positives = 357/634 (56%), Gaps = 41/634 (6%) Query: 73 TGYISQ------HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 TG+ +Q + + RR + + D +GE+ L F +K + EG ++ V Sbjct: 26 TGWAAQVDGVVTRNEVAFRPRRQLVVHIADDSGELVLRFLNFYGSQVKQMA-EGARLRVR 84 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 G+++ MVHP + + D P + VY G++ +K I+ AL R P L Sbjct: 85 GEVRGGFFGAEMVHP-AVRAVTPDEPLPDRLTPVYPSTAGVAQAYLRKAILNALGRTP-L 142 Query: 186 PEWIEKDLLQKKSFP----SIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQ 237 PE + LL+ P + AEA ++H P D E T PA R+ +DELLA Q Sbjct: 143 PETLPDSLLRGPLAPLKLMAPAEAVRLLHQPTPDVDEHSLVERTHPAWLRIKFDELLAQQ 202 Query: 238 IALLLMRKQFKKEI-GIPI----NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292 ++L R Q + P+ +G +A + L +PF T +Q ++I D+++ Sbjct: 203 LSL--KRAQAARRTRSAPVLRAGGADGLLA-RFLAALPFKLTGAQARVWEEIRADLARPY 259 Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352 M R+LQGDVGSGKT++A +A A++AG QA +MAP +LA+QHY + + + + Sbjct: 260 PMQRLLQGDVGSGKTVIAALAACQAIDAGRQAALMAPTELLAEQHYRKLSAWLAPLGVDI 319 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 + G++ + + +A R+A G A ++IGTHAL QD++ + +L L +VDEQHRFGV QRL Sbjct: 320 VWLAGSLKRKQKDEAAARVAAGTAQLVIGTHALIQDTVTFARLGLAVVDEQHRFGVAQRL 379 Query: 413 KLTQKATA------------PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460 L KA PH L+M+ATPIPRTL +T D+D+S I E P GR P+ T Sbjct: 380 ALRGKAGGTDTPVAETAQLVPHQLMMSATPIPRTLAMTYYADLDVSAIDELPPGRTPVVT 439 Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIA 519 ++ R DEVIER+ EG++ YW+CP IEE + ++ VE F +L + + Sbjct: 440 RLVNDARRDEVIERIHAAAREGRQVYWVCPLIEESEALQLQTAVETFETLSQSLAGLKVG 499 Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579 ++HGR+ DK +VM +F G +L+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQL Sbjct: 500 LVHGRLPSADKAAVMSAFAGGELHVLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQL 559 Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639 RGRVGRG S CILLY PLS + RL ++ T DGF IA DL R GE LG +QS Sbjct: 560 RGRVGRGTAESVCILLYQAPLSPTAKQRLQTMRETTDGFEIARRDLDIRGPGEFLGARQS 619 Query: 640 GMPKFLIAQPELHDS-LLEIARKDAKHILTQDPD 672 G A HD+ ++E A+ A+ +L + PD Sbjct: 620 GEAMLRFADLN-HDAWMVEFAQGAAEQMLARFPD 652 >gi|119896768|ref|YP_931981.1| ATP-dependent DNA helicase RecG [Azoarcus sp. BH72] gi|119669181|emb|CAL93094.1| ATP-dependent DNA helicase [Azoarcus sp. BH72] Length = 679 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 239/671 (35%), Positives = 369/671 (54%), Gaps = 27/671 (4%) Query: 14 STFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTIT 73 S + G+G++ + L K+ + R DL+ + P + D I I Sbjct: 3 SGWAGLGEQLASRLRKL------DLHRQEDLVVHLPLRYEDETRLTPIGVARAGFPAQIE 56 Query: 74 GYISQHSSFQLQKRRPYKILLNDGTGEITLLF--FYRKTEMLKNVFFEGRKITVTGKIKK 131 G ++ L+ RR + D +G + + FY + V GR++ + G+++ Sbjct: 57 GEVTS-CEVVLRPRRQLVARVRDDSGTLVARWINFYPSQQKQLAV---GRRVRLFGEVRG 112 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188 MVHP + D L EA VY GL +K+I AL +P L + Sbjct: 113 GFFGDEMVHPRV---RNIDPGEGLPEALTPVYPTTAGLGQTTLRKLIDRALKTVP-LQDL 168 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMR 244 + +D + P AEA +H+P D PA R+ ++ELL Q++L Sbjct: 169 LPEDARRALDLPGFAEALTALHHPAPDADPIALENREHPAWRRIKFEELLVQQLSLRRAY 228 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 + + + ++ ++R +PF+ T +Q+ A+ +I D+ + M R+LQGDVGS Sbjct: 229 NARRAREAVVLPARQQLTAGLVRGLPFALTSAQQRAVGEIAADLGAAHPMQRLLQGDVGS 288 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKT+VA +AM A E G QA +MAP ILA+QHY+ + + + + + ++G+ + R Sbjct: 289 GKTIVAALAMLQAAENGWQAALMAPTEILAEQHYKKLAAWLEPLGVGIAWLSGSRRKRER 348 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---AP 421 L R+ G+ + +GTHAL +D + +L L I+DEQHRFGV+QRL L +K P Sbjct: 349 EAELARLQSGEVLLAVGTHALIEDEVALPRLALAIIDEQHRFGVRQRLALREKGAHGLRP 408 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 H+L+M+ATPIPRTL +T D+D+S + E P GR PI+T ++ R +EV+ R++ + Sbjct: 409 HMLMMSATPIPRTLAMTHYADLDVSVLDELPPGRTPIRTKLVSDARREEVVGRVRDACLQ 468 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540 G++AYW+CP IEE + ++ ++ + +L E + ++HGR+ +K + M +F G Sbjct: 469 GRQAYWVCPLIEESEALQLQTALDTYAALSEALPELRVGLVHGRLKADEKSATMAAFSAG 528 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S CILL+ PL Sbjct: 529 ELQVLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCILLFAQPL 588 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S+N RL V+ DGF IA EDL+ R GE +G +QSG+P A EL L+E AR Sbjct: 589 SENGRARLKVIYEHTDGFAIAREDLQLRGPGEFVGARQSGVPLLRYADLELDAGLIEPAR 648 Query: 661 KDAKHILTQDP 671 A+ +L P Sbjct: 649 ALAERMLRDAP 659 >gi|206895105|ref|YP_002246645.1| ATP-dependent DNA helicase RecG [Coprothermobacter proteolyticus DSM 5265] gi|206737722|gb|ACI16800.1| ATP-dependent DNA helicase RecG [Coprothermobacter proteolyticus DSM 5265] Length = 793 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 244/679 (35%), Positives = 376/679 (55%), Gaps = 40/679 (5%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P+S +GVG K L K+ + T DL+ Y P F+DR K+ ++ T Sbjct: 112 PVSKLKGVGSKVGASLEKL------DVTTVWDLIHYVPMRFVDRSKILKVKQLRTGIDAT 165 Query: 72 ITGYISQHSSFQLQKR-RPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 + G + +LQK R Y++L L D TG + L+FF E L F G+ + VTG Sbjct: 166 VLGTVV---DVKLQKTYRGYRLLTVTLQDDTGRVDLVFF--NQEFLARKFRRGQLVMVTG 220 Query: 128 KIKKLKNRIIMVH----PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS--- 180 K++ R+ + + + +++ P+I VY G + + +K+I AL Sbjct: 221 KVESNHGRLQLTNLRSDSFEVLEPGKEI-LPMI-PVYRAGAGTTTNTIRKVIFNALDQYS 278 Query: 181 -RLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 ++P + P W Q+K F S +A +H P FE AR +AY E+ Q+ Sbjct: 279 HKVPEIFPYW------QEKGFLSYPDAVEKLHRPENQAQFE---KARSEIAYREIFVLQV 329 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 L L +K + GI VE +++ R +PF+ T +Q+ I +IL DM + M R+L Sbjct: 330 LLALRKKVIGQAQGISFRVERDWIEELERKLPFTLTNAQKRVILEILNDMQKSKPMNRLL 389 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKT+VA+ AM A + G Q+ +M P +LA QHY ++ + + V ++ G+ Sbjct: 390 QGDVGSGKTVVAMFAMFVAAKNGKQSAVMVPTEVLAFQHYMVFSQWAEQFGLRVGLLVGS 449 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL--TQ 416 + + + K + GQ I++GTHAL Q+ + L LVI+DEQHRFGV QR L Sbjct: 450 LSASEKSKVKRYLKSGQLDIVVGTHALIQEDTSFKDLGLVIIDEQHRFGVYQRAALISMD 509 Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 K+ P VL+M+ATPIPRTLVLT GD+D+S I E P RKP+KT + R V E +K Sbjct: 510 KSKQPDVLVMSATPIPRTLVLTYYGDLDVSVIDELPPNRKPVKTFWVSEKRRSSVYEAVK 569 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVM 534 L EG++AY + P IEE + + + L F + ++HG+M+ +K++VM Sbjct: 570 RELDEGRQAYVVAPLIEESESIEAAAATSLYEELCSTFLKDYKVGLLHGKMNKEEKKNVM 629 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 D F+ G+ ++L++TTVIEVG+DV +A++++IE A+ FGL+QLHQLRGRV R + C L Sbjct: 630 DEFRKGSLQVLVSTTVIEVGVDVPNATVMVIEGADRFGLSQLHQLRGRVVRSSYQAYCYL 689 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 + + ++ + RL + DGF +AE+DL R GE++G +Q G +A Sbjct: 690 IANAK-TQEAVERLESMVKYSDGFALAEKDLLLRGPGELMGERQHGFSGMRVADLIKDMK 748 Query: 655 LLEIARKDAKHILTQDPDL 673 +LE AR+DA+ ++++DP+L Sbjct: 749 MLEPARQDAERLVSEDPNL 767 >gi|124023369|ref|YP_001017676.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str. MIT 9303] gi|123963655|gb|ABM78411.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str. MIT 9303] Length = 846 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 246/692 (35%), Positives = 384/692 (55%), Gaps = 41/692 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L +PLS +G+G K + L+ + + + Y+P ++D +I + Sbjct: 147 LESPLSEVKGIGPKLAERLAGLGLLLVKDLLQ------YYPRDYVDYSSLRRIQALEAGE 200 Query: 69 IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFE------ 119 TI + + F + IL L D TG + + F+ + + Sbjct: 201 AATIVATVRRCHGFTSPRNPNLSILELQLQDPTGRLKVRRFFAGRRFSSPAYLKSQSRLY 260 Query: 120 --GRKITVTGKIK------KLKNRII--MVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVD 169 G + V+G +K ++ +I M PH SQ + L VY+L GL+ D Sbjct: 261 PPGVTVAVSGLVKGGPYGMSFQDPLIEVMESPHSPL-RSQSIGRLL--PVYALTEGLTAD 317 Query: 170 LFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA 229 F+ ++ + L PE + + Q PS ++A IH+P D AR RL Sbjct: 318 RFRDLVRQVLPLAASWPESLPEPRRQALRLPSRSDALIAIHHP---DDQHTLQSARRRLV 374 Query: 230 YDELLAGQIALLLMRKQFKKEIGIPINVEGK---IAQKILRNIPFSPTKSQESAIKDILQ 286 +DE L Q+ LL R + + + G+ + + L +PF T +Q+ +++I Sbjct: 375 FDEFLLLQLGLLKRRAELRSCSAPVLQTAGQRDGLVARFLELLPFPLTGAQQRVLREIEA 434 Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346 D+ M R++QGDVGSGKT+VA+ A+ AVEAG Q MAP +LA+QHY + + Sbjct: 435 DLVLSEPMARLIQGDVGSGKTVVAIAALLTAVEAGWQGAFMAPTEVLAEQHYRTLCCWLP 494 Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 + VE++TG + RR+ L+ + +G I++GTHAL +D + + +L LV+VDEQHRF Sbjct: 495 QLHVSVELLTGATTRIRRRQILDDLVNGSLKILVGTHALIEDPVAFSRLGLVVVDEQHRF 554 Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466 GV+QR +L K PH+L MTATPIPRTL L+ GD+D+S+I E P GR PI+T +I Sbjct: 555 GVKQRNRLLNKGLQPHLLTMTATPIPRTLALSLHGDLDVSQIDELPPGRTPIQTQMIRGC 614 Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGR 524 D+ + ++ +S G++AY + P IE+ ++ + RS V+ + L E + ++ ++HGR Sbjct: 615 DRDQAYQLIRDQVSRGQRAYVVLPLIEDSEKLDLRSAVKVHSHLSEQVFAEFTVGLLHGR 674 Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584 +S +K+ V+ SF G C++L++TTV+EVG+DV AS+++I++A+ FGLAQLHQLRGRVG Sbjct: 675 LSSSEKQGVIQSFAAGECQVLVSTTVVEVGVDVPQASVMVIDHADRFGLAQLHQLRGRVG 734 Query: 585 RGEEISSCILLYHP--PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642 RG S C+L+ PL++ RL VL + DGF IAE DL+ R G++LG KQSG+P Sbjct: 735 RGAAASHCVLINDSTNPLARQ---RLEVLVRSSDGFEIAEIDLRLRGPGQVLGTKQSGLP 791 Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 +A S+LE AR +A+ +L+ DP+LT Sbjct: 792 DLALASLADDGSVLEEARDEAQRLLSDDPNLT 823 >gi|154504978|ref|ZP_02041716.1| hypothetical protein RUMGNA_02488 [Ruminococcus gnavus ATCC 29149] gi|153794861|gb|EDN77281.1| hypothetical protein RUMGNA_02488 [Ruminococcus gnavus ATCC 29149] Length = 686 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 246/682 (36%), Positives = 385/682 (56%), Gaps = 32/682 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP-KISEISEERIVT 71 +S +GVG+K K A DLL Y+P ++ D + P I EI E + VT Sbjct: 7 ISVLKGVGEKTEQLFIK------AGVHTIGDLLAYYPRTY-DIYEDPISIGEIQEGKTVT 59 Query: 72 ITGYI------SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 + G I SQ+ Q+ + L D TG + +++F + L+N G IT+ Sbjct: 60 VIGAIFGRIQVSQNKKMQITT-----LYLKDMTGTLKVIWF--RMPFLRNTLGRGGVITL 112 Query: 126 TGKIKKLKNRIIMVHPHYIFHN-SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184 G+I + K+ ++M HP + + S + ++ VY+L GL+ + KK + +AL ++ Sbjct: 113 RGRIVRKKDALVMEHPEIFYPSASYEEKRNTMQPVYALTAGLTNNAVKKAVAQALEQVEG 172 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 + E++ ++L+ + A IH P ++F AR+R ++E L ++L +++ Sbjct: 173 IREFLPEELICRYHLLDRRTAMEGIHFPETKEEF---YEARKRFVFEEFLIFVLSLRMIK 229 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 ++ + + + L +P+ T +Q+ ++IL+D+S ++ M R++QGDVGS Sbjct: 230 EREDRAKNHYGFCDQPKVDEFLYALPYELTGAQKKVWQEILRDISGESVMSRLVQGDVGS 289 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV--EIITGNMPQA 362 GKT+VAL+A+ G Q+ +MAP +LA+QHYE I + I + E++TG+M Sbjct: 290 GKTIVALLALMYTGLNGYQSAMMAPTEVLARQHYENISGMLEAYGIPLKTELLTGSMTAK 349 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 +R+A RI G+A I+IGTHAL Q+ +QY L LV+ DEQHRFGV+QR L K PH Sbjct: 350 AKREAYARIEAGEADIVIGTHALIQEKVQYQNLALVVTDEQHRFGVKQRETLAGKGVLPH 409 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 +L+M+ATPIPRTL + GD+DIS I E P R PIK ++ + +K + G Sbjct: 410 ILVMSATPIPRTLAIILYGDLDISVIDELPKNRLPIKNCVVDTGYRNTAYTFMKKQVQSG 469 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNG 540 ++ Y ICP +EE + +V + L + S+ + +HG+M K+ +M++F Sbjct: 470 RQCYVICPMVEESEALEAENVTDYSQMLQDIMGESVKVGCLHGKMKQAQKDEIMEAFGKN 529 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L++TTVIEVGIDV +A++++IENAE FGLAQLHQLRGRVGRG S CI + P Sbjct: 530 EIQILVSTTVIEVGIDVPNATVMMIENAERFGLAQLHQLRGRVGRGGHQSYCIFI-SPSK 588 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL-LEIA 659 SK + RL +L + DGF IA EDL+ R G++ GI+QSG+ F + DSL L+ A Sbjct: 589 SKETKERLGILNQSNDGFFIAGEDLRLRGPGDLFGIRQSGLMDFKLGDV-FQDSLILKQA 647 Query: 660 RKDAKHILTQDPDLTSVRGQSI 681 + A +L DP L S R + + Sbjct: 648 AEAAGELLRTDPGLKSERNRRL 669 >gi|52080190|ref|YP_078981.1| ATP-dependent DNA helicase RecG [Bacillus licheniformis ATCC 14580] gi|52785567|ref|YP_091396.1| ATP-dependent DNA helicase RecG [Bacillus licheniformis ATCC 14580] gi|319646031|ref|ZP_08000261.1| RecG protein [Bacillus sp. BT1B_CT2] gi|52003401|gb|AAU23343.1| ATP-dependent DNA helicase [Bacillus licheniformis ATCC 14580] gi|52348069|gb|AAU40703.1| RecG [Bacillus licheniformis ATCC 14580] gi|317391781|gb|EFV72578.1| RecG protein [Bacillus sp. BT1B_CT2] Length = 682 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 242/649 (37%), Positives = 371/649 (57%), Gaps = 21/649 (3%) Query: 42 IDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL--QKRRPYKILLNDGTG 99 +DLL Y P + D R + +++ + VT+ G + S +KR L G Sbjct: 32 LDLLNYFPYRYDDYELR-DLEDVAHDERVTVEGKVHSEPSLAYYGKKRSRLTFRLLVGNY 90 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159 IT + F R LK G +TVTGK K + +++ N IE V Sbjct: 91 LITAVCFNRP--YLKKKLAIGSIVTVTGKWDKHRQSVMVQE----LKNGPHQGDQSIEPV 144 Query: 160 YSLPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 YS+ ++V +K+I EA+ S LP + + + L S EA +H P Sbjct: 145 YSVKENITVKTMRKLIQEAVRSHLPFAEDPLPEKLRTAYKLLSYQEAVKAMHKPESR--- 201 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKS 276 E AR R Y+E L Q+ + +RK F++E GI + ++++PF T + Sbjct: 202 EALKHARRRFVYEEFLLFQLKMQALRK-FEREASDGISHTFRLEDVNSFVKSLPFPLTNA 260 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q A+ DIL+DM+ +M R+LQGDVGSGKT VA IA+ A++ +G Q +M P ILA+Q Sbjct: 261 QAKALDDILRDMASGYKMNRLLQGDVGSGKTAVAAIALYASLLSGFQGAMMVPTEILAEQ 320 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 H + + + + V ++T ++ RR+ LER+ G+ I++GTHAL QD + + +L Sbjct: 321 HADSLVSLFEQHDVNVALLTSSVKGKRRRELLERLKEGEIDILVGTHALIQDDVHFKQLG 380 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 LVI DEQHRFGV+QR KL K P VL MTATPIPRTL +T G++D+S I E PAGRK Sbjct: 381 LVITDEQHRFGVEQRKKLRSKGKDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRK 440 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 I+T + + ++ ++ + L +G++AY ICP IEE + + ++ ++ + L F Sbjct: 441 RIETYWVKHDMLERILAFIDKELKKGRQAYVICPLIEESDKLDVQNAIDVHSMLTHAFRG 500 Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 I ++HG++S+ +KE VM F C++L++TTV+EVG++V +A++++I +A+ FGL+ Sbjct: 501 RWQIGLMHGKLSNDEKEQVMRQFSKNECQILVSTTVVEVGVNVPNATVMLIYDADRFGLS 560 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG+ S CIL+ P S+ R+S++ T DGF ++E+DL+ R G+ Sbjct: 561 QLHQLRGRVGRGDHQSYCILMADPK-SETGKERMSIMSETTDGFELSEKDLELRGPGDFF 619 Query: 635 GIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTSVRGQSIR 682 G KQSGMP+F +A +HD LE AR+DA +++ T +S+R Sbjct: 620 GKKQSGMPEFKVADM-VHDYRALETARRDAAELVSSKAFWTDAEYKSLR 667 >gi|166031900|ref|ZP_02234729.1| hypothetical protein DORFOR_01601 [Dorea formicigenerans ATCC 27755] gi|166028353|gb|EDR47110.1| hypothetical protein DORFOR_01601 [Dorea formicigenerans ATCC 27755] Length = 676 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 247/670 (36%), Positives = 379/670 (56%), Gaps = 34/670 (5%) Query: 17 RGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITG 74 +GVG+K +K I G DLL Y+P ++ I+E+ + R VT+TG Sbjct: 11 KGVGEKTEKLFAKLGIYTVG--------DLLRYYPRNYDVYEEAVPIAEVEDGRTVTVTG 62 Query: 75 YISQHSSFQLQKRRPYK---ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I Q+ R + I + D TG I ++F + LKN G +IT+ G+ Sbjct: 63 MI--FGRVQVGGSRNLQVTTIYVKDLTGTIKAVWF--RMPFLKNTLAGGGQITLRGRAVN 118 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL--IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 ++ +++ HP IF+ S+ L ++ +Y+L GL+ + K + + + L + E + Sbjct: 119 RRDGLVLEHPE-IFYPSEKYEEKLHTLQPIYNLTAGLTNNAISKAVKQVVESLDLTKEHL 177 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR---KQ 246 +++ A IH P +D E ARERL ++E L +A+ ++ + Sbjct: 178 PEEIRLHYQLAEYNYAIRGIHFP---EDKEVFYHARERLVFEEFLQFILAIRKLKDSNSR 234 Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 E IP+++ + QK L PF T +Q++ ++I QDM+ ++ M R++QGDVGSGK Sbjct: 235 MDNEYVIPLDLRTEEFQKAL---PFELTGAQQNVWREIQQDMASEHAMSRLVQGDVGSGK 291 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHR 364 T+VA++A+ G QA +MAP +LA+QHYE I + N I V ++TG+M + Sbjct: 292 TIVAVLALLNTALKGYQAAMMAPTEVLARQHYESITSLFEAYNIPIKVVLLTGSMTAKEK 351 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424 R+A +RI G A II+GTHAL QD++ Y L LV+ DEQHRFGV+QR +K PHVL Sbjct: 352 RRAYDRIECGLAKIIVGTHALIQDAVYYDNLALVVTDEQHRFGVKQRESFAKKGGVPHVL 411 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 +M+ATPIPRTL + GD+DIS I E PA R PIK ++ + +K ++EG++ Sbjct: 412 VMSATPIPRTLAIILYGDLDISVIDELPANRLPIKNCVVDTSYRQTAYTFMKKQIAEGRQ 471 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTC 542 Y ICP +EE + +V + L E + I + +HG+M K+ +M+ F Sbjct: 472 CYIICPMVEESEAMEAENVTDYSRMLQEEMGTQIVVDHLHGKMKQAAKDEIMERFGRNEI 531 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 ++L++TTVIEVGIDV +A++++IENAE FGLAQLHQLRGRVGRG+ S CI + +K Sbjct: 532 QILVSTTVIEVGIDVPNATVMMIENAERFGLAQLHQLRGRVGRGKYQSYCIFMTGSK-AK 590 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662 + RL +L T DGF IA EDLK R G++ GI+QSG+ F + ++L+ A + Sbjct: 591 ETKKRLEILNKTNDGFKIASEDLKLRGPGDLFGIRQSGLMDFGLGDIYQDAAILQKANEA 650 Query: 663 AKHILTQDPD 672 A+ +L +P+ Sbjct: 651 AEWLLKNNPE 660 >gi|254479490|ref|ZP_05092814.1| ATP-dependent DNA helicase RecG [Carboxydibrachium pacificum DSM 12653] gi|214034575|gb|EEB75325.1| ATP-dependent DNA helicase RecG [Carboxydibrachium pacificum DSM 12653] Length = 682 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 251/639 (39%), Positives = 386/639 (60%), Gaps = 19/639 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY--KILLNDGTGE 100 DL+FY P + DR KI ++ T YI+ S+ +++ R KI + DGTG Sbjct: 31 DLIFYFPRDYEDRSEIVKIEDLVVGEKQTFKAYIA-GSAREVKTSRVVITKIPVKDGTGA 89 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL--IEA 158 + L+++ +KN F G + ++GK++ ++++ +P + + +D+N I Sbjct: 90 VELVWY--NQPYMKNNFKIGEEYIISGKLQFKYGQLVVENP-VLEKSEEDLNLNTGRIVP 146 Query: 159 VYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 VY L GL+ ++ +K+I ALS L + E+ E++ L++K ++ EA IH P KD Sbjct: 147 VYGLTEGLTQNILRKVIFNALSEYLDEVEEFFEEEFLREKGLMNLKEALLNIHFP---KD 203 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK-ILRNIPFSPTKS 276 E + A+ RL Y EL Q+AL L++K K++ GI K+ K + N+PF T + Sbjct: 204 EEKLARAKYRLKYQELFLLQLALFLVKKSVKEKRGIRFR---KVDIKPFVSNLPFKLTSA 260 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q +K+I+ DM+ M R++QGDVGSGKT+VA AM A + G Q +MAP ILA+Q Sbjct: 261 QMKVLKEIILDMASDKVMNRLIQGDVGSGKTIVAAFAMYIAAKNGYQVAMMAPTEILAKQ 320 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 HY+ +++ + T I + +++G++ + R++ LE+I G+ +++GTHAL ++ + + L Sbjct: 321 HYKTLEEIFKGTDIRIGLLSGSLSPSGRKEVLEKIEKGEYDVVVGTHALIEEDVSFKNLG 380 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 L I DEQHRFGV+QR L QK P VL+MTATPIPRTL L GD+DIS I + P GRK Sbjct: 381 LCITDEQHRFGVRQRALLAQKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRK 440 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-- 514 +KT +IP + + E + +G++ Y +CP IEE + S + +++ Sbjct: 441 RVKTYVIPSSMRKKAYEFAIKEVKKGRQVYVVCPLIEESDKIKAASAEIVYREIYKDAFK 500 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + + ++HG+MSD DKE +M++F G +L++TTVIEVG++V +A+++I+ENAE FGLA Sbjct: 501 EARVGLLHGKMSDSDKERIMEAFVRGEIDILVSTTVIEVGVNVPNATVMIVENAERFGLA 560 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGR E S CIL+ + P S+ + RL VL DGF IAE DL+ R GE L Sbjct: 561 QLHQLRGRVGRSEFQSYCILINYSP-SETAKKRLEVLARISDGFKIAERDLEIRGPGEFL 619 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 G KQ G+P+F IA +L+ +KD + +L +DP L Sbjct: 620 GEKQHGLPEFKIANLFEDIDILKRVQKDVESLLEEDPKL 658 >gi|169827086|ref|YP_001697244.1| ATP-dependent DNA helicase RecG [Lysinibacillus sphaericus C3-41] gi|168991574|gb|ACA39114.1| ATP-dependent DNA helicase recG [Lysinibacillus sphaericus C3-41] Length = 688 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 253/674 (37%), Positives = 380/674 (56%), Gaps = 29/674 (4%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64 + L+ P++ +GVGK+ + L + IN DLL+ P D + Sbjct: 8 MTELYGPVNELKGVGKETAAHLESLGINT-------IADLLWTFPHRHEDFRLKDLAQTP 60 Query: 65 SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRK 122 ER VT+ + + + R ++ + G + ++FF + LK G Sbjct: 61 HNER-VTVECKVEREPTILFLGRNKSRLQVTVLAGRHLVKVVFFNQG--YLKQKLVPGSI 117 Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQD-VNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 ITVTGK + R ++ F D V+F E VYSL + F+K + + L Sbjct: 118 ITVTGKWDR--GRQVINGTSVSFGPKTDQVDF---EPVYSLKGLIQQKRFRKYMRQVLDE 172 Query: 182 LPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 LP+ I + I E IH P +D + AR R AY+ELL Q+ + Sbjct: 173 YGANLPDAIPQHFQDSYKLLPIQEGLEGIHFP---QDAQHAKQARRRFAYEELLNFQLRM 229 Query: 241 LLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 +RK K+ E G I + + ++ + +P+ T +Q+ + +I +D+ + +RM R+LQ Sbjct: 230 QALRKVRKENEQGTVIQYDVHLLREFIAALPYELTNAQKRVVNEICKDLKEPHRMNRLLQ 289 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT+VA I + AAV AG Q +MAP ILA+QH E ++++ Q + V +++G+ Sbjct: 290 GDVGSGKTVVAAIGLYAAVSAGYQGALMAPTEILAEQHLENLQEWFQPFGVRVALLSGST 349 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 RR L +A+G+ I+IGTHAL Q + + KL VI DEQHRFGV+QR L K Sbjct: 350 KMKERRVILADLANGELDIVIGTHALIQPDVIFKKLGFVITDEQHRFGVEQRRILRDKGE 409 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 P VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T + + V+ +L+ L Sbjct: 410 NPDVLFMTATPIPRTLAITAFGEMDVSMIDEMPAGRKQIETHWMKKEQFGSVMSKLEGEL 469 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSF 537 + G++AY ICP IEE + + ++ VE + L +F + ++HGR+S +K++VM +F Sbjct: 470 AAGRQAYAICPLIEESDKLDVQNAVEIYEQLATYFNGRYQVGLMHGRLSADEKDAVMRAF 529 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 +G+ ++L++TTV+EVG++V +A+ +I+ +AE FGLAQLHQLRGRVGRGE S CILL Sbjct: 530 SDGSIQVLVSTTVVEVGVNVPNATFMIVYDAERFGLAQLHQLRGRVGRGEHQSYCILLAD 589 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLL 656 P S R+ + T DGF +AE+DL+ R G+ G KQSG+P F +A +HD +L Sbjct: 590 PK-SDEGKERMQSMTETNDGFRLAEKDLELRGPGDFFGRKQSGLPDFKVADL-VHDYRIL 647 Query: 657 EIARKDAKHILTQD 670 E ARKDA +L D Sbjct: 648 ETARKDATMMLETD 661 >gi|254253194|ref|ZP_04946512.1| RecG-like helicase [Burkholderia dolosa AUO158] gi|124895803|gb|EAY69683.1| RecG-like helicase [Burkholderia dolosa AUO158] Length = 792 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 245/660 (37%), Positives = 365/660 (55%), Gaps = 25/660 (3%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D I E+ + G + + + RR + + D Sbjct: 119 TRSIDLVLHLPMRYEDETTLTPIGELLPGGVAQTEGVVIDNE-VAYRPRRQLVVKIRDDD 177 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIE 157 GE +L F G+++ V G ++ + MVHP + D P ++ Sbjct: 178 GEQLVLRFLNFYGSQVKQMAVGQRLRVRGDVRGGFFGMEMVHPAVRVVEA-DAPLPQVLT 236 Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 VY G+S +K I AL R P+ LP I++ LQ PS+A+A ++H+P Sbjct: 237 PVYPSTAGVSQAYLRKAIDNALERTPLPELLPPEIDRAYLQPLGVPSLAQAVRMLHHPGV 296 Query: 215 AKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IAQKI 265 D + + PA R+ ++ELLA Q++L ++ + + + ++ Sbjct: 297 DADEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAAPAMPRRAAADADALTTRL 356 Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 +PF T +Q + +I D++ + M R+LQGDVGSGKT+VA +A A A++AG QA Sbjct: 357 YAALPFKLTGAQARVVDEIAHDLTLPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQAA 416 Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +MAP ILA+QH ++ + + + V + G++ +R A+E A G A ++IGTHA+ Sbjct: 417 LMAPTEILAEQHARKLRAWLEPLGVSVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTHAI 476 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLV 436 QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRTL Sbjct: 477 IQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAANGARDFQPHQLMMSATPIPRTLA 536 Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496 +T D+D+S I E P GR P+ T ++ R DEVI R++ G++ YW+CP IEE + Sbjct: 537 MTYYADLDVSTIDELPPGRTPVLTRVVGDARRDEVIARVREAALTGRQVYWVCPLIEESE 596 Query: 497 ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555 ++ VE + +L + ++HGR+S DK +VMD+F +LL+ATTVIEVG+ Sbjct: 597 TLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMDAFTRNDVQLLVATTVIEVGV 656 Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615 DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+LLY PLS RL ++ T Sbjct: 657 DVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYSGPLSIAGRERLKTMRETT 716 Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 DGF IA DL+ R GE LG +QSG A E L+E AR+ A ++ PD+ + Sbjct: 717 DGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLIEPAREAAARLIAAYPDVVT 776 >gi|300088038|ref|YP_003758560.1| ATP-dependent DNA helicase RecG [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527771|gb|ADJ26239.1| ATP-dependent DNA helicase RecG [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 824 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 237/657 (36%), Positives = 366/657 (55%), Gaps = 34/657 (5%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 D+L++ PS +D I+E+S TI + + + RR + ++ D TG I Sbjct: 153 DMLYHFPSRHVDYSRTTPIAELSPGPEQTIVATVWEVRTTTPGGRRSTEAIVGDETGNIR 212 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYS 161 L+F L ++ ++GKI KN ++ P + N + V+ + +Y Sbjct: 213 ALWF--NNPYLTRQIHANDRLVLSGKIGVFKNTLVFESPEWEKLENRELVHTGRLAPIYP 270 Query: 162 LPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220 L GL +K++ E + P L E++ +D+ ++ ++ EA H P D+E Sbjct: 271 LTAGLFPRQMRKLMKEVVDGFAPSLEEYLPEDIRARRDLITLPEAVAQAHFP---DDYEA 327 Query: 221 TSPARERLAYDELLAGQIALLLMRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 AR RLA+DEL Q+ ++ ++ ++ G+P + + ++ L ++ F T +Q Sbjct: 328 KDAARSRLAFDELFVLQLGVMARKRAWRLSRPGLPTPTDQSLLKRFLDSLSFQLTAAQRR 387 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 ++ DIL DMS+ M R+LQGDVGSGKT+VA A +V AG Q MAP ILA+QHY Sbjct: 388 SLNDILDDMSRSEAMSRLLQGDVGSGKTVVATAAALMSVAAGYQCAFMAPTEILAEQHYR 447 Query: 340 FIKKYTQ--------------------NTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379 + + + V ++ G+ + ++ +RI +G ++ Sbjct: 448 SVTGMLDILASDRQESAGVTSFLGILPDRPLTVALLIGDAKASGKKLIRDRIRNGDIDLV 507 Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439 IGTH+L Q S+++ KL L I+DEQHRFGV+QR L QK PH+L+MTATPIPRTL LT Sbjct: 508 IGTHSLVQKSLKFQKLGLAIIDEQHRFGVEQRQNLRQKGNNPHLLVMTATPIPRTLALTL 567 Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499 GD+D+S I E P GR+ I+T + + ++ + ++A+ ICP +EE + Sbjct: 568 YGDLDLSVIDELPPGRQAIRTRWLKPEQRASAYAFIRKQVELKQQAFIICPLVEESEAIQ 627 Query: 500 FRSVVERFNSLH-EHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557 R+ + L E F + +IHGRMS +KESVM +F G +L++T VIEVGIDV Sbjct: 628 ARAATAEYEKLKMEIFPEYRLGLIHGRMSAAEKESVMKAFDQGRLDILVSTPVIEVGIDV 687 Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617 +A++++IE+A+ FGL+QLHQ RGRVGRG E S C+LL P S+ + RLSV++N++DG Sbjct: 688 PNATVMLIESADRFGLSQLHQFRGRVGRGREQSYCMLLADNP-SEVANARLSVIENSQDG 746 Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDL 673 F +AEEDL+ R GE G +QSG+P +A+ L D +LE AR +A + DP+L Sbjct: 747 FSLAEEDLRLRGPGEFFGTRQSGLPDLKMAR--LSDVPILEAARAEAMRLFENDPEL 801 >gi|134299934|ref|YP_001113430.1| ATP-dependent DNA helicase RecG [Desulfotomaculum reducens MI-1] gi|134052634|gb|ABO50605.1| ATP-dependent DNA helicase RecG [Desulfotomaculum reducens MI-1] Length = 685 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 238/672 (35%), Positives = 389/672 (57%), Gaps = 19/672 (2%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDR-HYRPKISEISEE 67 +++P+ +GVG + + L ++ DLL++ P + DR RP S S+ Sbjct: 4 IYSPIQYMKGVGPQRAKQLERL------GIFTTWDLLYHFPREYQDRSDIRPAHS-FSQG 56 Query: 68 RIVTITG-YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 + T+ G I+ S + K+ L +G G ++F + +K + G+++ +T Sbjct: 57 DLATVKGTVIAAQESKPRRGLSITKLALQEGAGTFYAVWFNQT--YIKKQYPPGKELLIT 114 Query: 127 GKI-KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 GK+ +K I V H + + ++ I +Y L L+ + +I L ++ L Sbjct: 115 GKVDRKFGVPQIQVTDHEVLEGDEGMHSGRIVPIYPLTESLNQRFLRSLIKTTLEQVGSL 174 Query: 186 P-EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 E++ +L + + P + EA IH P + AR R +EL ++ + L + Sbjct: 175 AREFLPDSMLDRYNLPCLPEALREIHFPENQASCQR---ARRRFIMEELFLFELGVNLQK 231 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 + K++ +E ++ ++L ++PF T++Q+ ++I +D+ M R+LQGDVG+ Sbjct: 232 GRILKKVKKHEYIEEALSNRLLMSLPFRLTEAQKRVWREIEEDLKSSFPMNRLLQGDVGA 291 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKT++A + + A +G Q +MAP +LA+QH + IK + I V ++TG+ + R Sbjct: 292 GKTVIAALTLCKAAGSGLQGALMAPTELLAEQHAKGIKDLLEPMGIKVALLTGSGKKG-R 350 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424 +K L+ +A G + IGTHAL + +QY L LV+VDEQHRFGV+QR L K AP VL Sbjct: 351 KKTLDALASGDIQVAIGTHALISEDVQYKNLGLVVVDEQHRFGVRQRAALQDKGVAPDVL 410 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 +MTATPIPRTL LT GD+D+S I + P GR+ IKT + + + + + +K ++EG++ Sbjct: 411 VMTATPIPRTLALTLYGDLDVSIIDQLPPGRQGIKTHHVGLAQAGKAVGLIKQQITEGRQ 470 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 AY +CP +EE ++ + ++ VE L + SI ++HGRM +KE VM+ F+ GT Sbjct: 471 AYVVCPLVEESEKIDTQAAVELHGRLQKALVDCSIGLLHGRMKTQEKELVMNEFRKGTID 530 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 LL++TTVIEVG+DV +A+ ++I +A+ FGLAQLHQLRGRVGRG S CIL+ P ++ Sbjct: 531 LLVSTTVIEVGVDVPNATAMVIWDAQRFGLAQLHQLRGRVGRGSHQSYCILVGD-PTTRE 589 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 + R++ + T+DGF++AEEDLK R GE G +QSG+P+F IA + +E A+K+A Sbjct: 590 AKERMAAMCRTQDGFVLAEEDLKLRGPGEFFGTRQSGLPEFKIADLIRNGKEIEQAKKEA 649 Query: 664 KHILTQDPDLTS 675 + +L+ +PDL S Sbjct: 650 EALLSLNPDLRS 661 >gi|296161047|ref|ZP_06843858.1| ATP-dependent DNA helicase RecG [Burkholderia sp. Ch1-1] gi|295888746|gb|EFG68553.1| ATP-dependent DNA helicase RecG [Burkholderia sp. Ch1-1] Length = 810 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 246/644 (38%), Positives = 364/644 (56%), Gaps = 29/644 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D I + I G + + +R+ L +D Sbjct: 137 TRDIDLVLHLPMRYEDETSLTPIGHLLPGGIAQTEGVVFDNEIAYRPRRQLLVKLRDDAG 196 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 E+ L F +K + G ++ V G ++ + MVHP D + PL +A Sbjct: 197 DELVLRFLNFYGSQVKQMAI-GARLRVRGDVRGGFFGMEMVHPAV---RVVDEDTPLPQA 252 Query: 159 ---VYSLPTGLSVDLFKKIIVEALSR--LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 VY G++ +K I ALSR LP +LPE + + L+ PS+ +A +H+P Sbjct: 253 LTPVYPSTAGVTQAYLRKSIDNALSRTSLPELLPEPVARTWLEPLGVPSLMDAVRTLHHP 312 Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLM--RKQFKKEIGIP---INVEGKIAQ 263 D + T PA R+ ++ELLA Q++L ++ + +P + E + Sbjct: 313 GVQSDETALIDGTHPAWVRIKFEELLAQQMSLKRAHEERRTRAAPAMPRRKLGDESALVA 372 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 ++L+ +PFS T +QE +I D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q Sbjct: 373 RLLKALPFSLTAAQERVGGEIALDLTQPHPMQRLLQGDVGSGKTIVAALAAAQAIDAGYQ 432 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 A +MAP ILA+QH ++ + + + V + G++ +R A+E A G A ++IGTH Sbjct: 433 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKTREKRAAIEAAALGTAQLVIGTH 492 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---------APHVLLMTATPIPRT 434 A+ QD++++ +L LVIVDEQHRFGV QRL L KA PH L+M+ATPIPRT Sbjct: 493 AIIQDAVEFARLGLVIVDEQHRFGVAQRLALRAKAQNAADGARDFQPHQLMMSATPIPRT 552 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L +T D+D+S I E P GR PI T ++ R +EVI R++ G++ YW+CP IEE Sbjct: 553 LAMTYYADLDVSTIDELPPGRTPILTKLVSDARREEVIGRVREAALTGRQVYWVCPLIEE 612 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ VE + +L ++ ++HGR++ +K +VMD+F +LL+ATTVIEV Sbjct: 613 SETLQLQTAVETYETLVAALPELNVGLVHGRLAPAEKAAVMDAFTRNEVQLLVATTVIEV 672 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+LLY PLS + RL ++ Sbjct: 673 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAASVCVLLYTGPLSMTARARLQTMRE 732 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 T DGF IA DL+ R GE LG +QSG A E L+E Sbjct: 733 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDQWLIE 776 >gi|284929234|ref|YP_003421756.1| ATP-dependent DNA helicase RecG [cyanobacterium UCYN-A] gi|284809678|gb|ADB95375.1| ATP-dependent DNA helicase RecG [cyanobacterium UCYN-A] Length = 813 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 247/655 (37%), Positives = 379/655 (57%), Gaps = 29/655 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99 DLLFY+P +I+ + IS I E VTI G + + + F K + IL + D TG Sbjct: 151 DLLFYYPRDYINYARQVTISNIKEGETVTIIGRVKRCNFFTSSKNKKLSILELVVQDHTG 210 Query: 100 EITLLFFYRKTEMLKNVFFEGRK--------ITVTGKIKK------LKNRIIMVHPHYIF 145 EI L F+ + E +K I V+G +K+ L N I V F Sbjct: 211 EIKLNRFFSGNRFTNKGWQEKQKRQYIRSTVIAVSGLVKQNRYGLTLDNLEIEVLDD--F 268 Query: 146 HNS-QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAE 204 ++S + N I VYSL G+ +L +KII+ L + + + L K + + Sbjct: 269 NSSIESWNIGRILPVYSLTEGIDNNLIRKIIISNLKSAKTILDPLPILLKSKYDLIDLKD 328 Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK--KEIGIPINVEGKIA 262 A IH P ++ AR RL +DE Q+ L R++ K K I + Sbjct: 329 ALINIHFP---TSLDFLERARRRLIFDEFFYLQLGFLKRRQERKVLKTIN-SFTPNRYLT 384 Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 + + +PF TKSQ I +I++D+ M R+LQGDVGSGKT+VA+ A+ +E+G Sbjct: 385 HQFNKLLPFELTKSQRRVINEIIKDLDSLQSMNRLLQGDVGSGKTIVAIFAILTTLESGY 444 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q +MAP +LA+QHY I Y + VE++TG+ ++ R + ++ G+ +++GT Sbjct: 445 QVALMAPTEVLAEQHYNKIVLYFNQLYLSVELLTGSTKKSKRNEIYRQLLTGELPLLVGT 504 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 HAL Q+ I++ KL LVI+DEQHRFGV+QR +L K +PHVL MTATPIPRTL LT GD Sbjct: 505 HALIQEPIKFKKLGLVIIDEQHRFGVEQRTRLLNKGKSPHVLSMTATPIPRTLALTLHGD 564 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502 +DIS+I E P GRK I+T ++ N+ + E + + +G++AY + P IEE ++ + ++ Sbjct: 565 LDISQIDELPPGRKAIETKVLIGNQKQKAYELINQEVIQGRQAYIVFPMIEESEKLDIKA 624 Query: 503 VVERFNSLH-EHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560 +E L E F S SI ++HGR++ ++K V++ F++ +++++TTVIEVG+D+ +A Sbjct: 625 AIEEHKKLSKEIFPSFSIGLLHGRLNALEKNKVLNDFRDNKYQIMVSTTVIEVGVDIPNA 684 Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620 ++++IENAE FGL+QLHQLRGRVGR S C L+ + N+ +L+VL+ ++DGF I Sbjct: 685 TVMLIENAERFGLSQLHQLRGRVGRSSFSSYCFLITSTK-TPNTLEKLNVLEQSQDGFFI 743 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 +E DLK R G ILG +QSG+P F +A + +LE+++ A+ I++ D L S Sbjct: 744 SEMDLKLRGPGTILGTRQSGLPDFALASLADNKEILELSKLIAEKIISSDIKLNS 798 >gi|33862854|ref|NP_894414.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str. MIT 9313] gi|33634770|emb|CAE20756.1| putative DNA helicase [Prochlorococcus marinus str. MIT 9313] Length = 846 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 244/696 (35%), Positives = 386/696 (55%), Gaps = 49/696 (7%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L +PLS +G+G K + L+ + + + Y+P ++D +I + Sbjct: 147 LESPLSEVKGIGPKLAERLAGLGLLLVKDLLQ------YYPRDYVDYSSLRRIQALEAGE 200 Query: 69 IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFE------ 119 TI + + F + IL L D TG + + F+ + + Sbjct: 201 AATIVATVRRCHGFTSPRNPNLSILELQLQDPTGRLKVRRFFAGRRFSSPAYLKSQSRLY 260 Query: 120 --GRKITVTGKIK------KLKNRII--MVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVD 169 G + V+G +K ++ +I M PH SQ + L VY+L GL+ D Sbjct: 261 PPGVTVAVSGLVKGGPYGMSFQDPLIEVMESPHSPL-RSQSIGRLL--PVYALTEGLTAD 317 Query: 170 LFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA 229 F+ ++++ L PE + + Q P ++A IH+P D + AR RL Sbjct: 318 RFRDLVLQILPLAASWPESLPEQRRQVLRLPRRSDALVAIHHP---DDQQTLQSARRRLV 374 Query: 230 YDELLAGQIALLLMRKQFKKEIGIPINVEGK---IAQKILRNIPFSPTKSQESAIKDILQ 286 +DE L Q+ LL R + ++ + G+ + + L +PF T +Q+ + +I Sbjct: 375 FDEFLLLQLGLLKRRAELRRCSAPVLQTAGRRDGLVARFLELLPFPLTAAQQRVLTEIEA 434 Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346 D+ M R++QGDVGSGKT+VA+ A+ AVEAG Q MAP +LA+QHY + + Sbjct: 435 DLVLSEPMARLIQGDVGSGKTVVAIAALLTAVEAGWQGAFMAPTEVLAEQHYRTLCCWLP 494 Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 + VE++TG + RR+ L+ + +G I++GTHAL +D + + +L LV+VDEQHRF Sbjct: 495 QLHVSVELLTGATTRIRRRQILDDLVNGSLKILVGTHALIEDPVAFSRLGLVVVDEQHRF 554 Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466 GV+QR +L K PH+L MTATPIPRTL L+ GD+D+S+I E P GR PI+T +I Sbjct: 555 GVKQRNRLLNKGLQPHLLTMTATPIPRTLALSLHGDLDVSQIDELPPGRTPIQTQMIRGC 614 Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS------SIAI 520 D+ + ++ +S G++AY + P IE+ ++ + RS V+ +H H + ++ + Sbjct: 615 DRDQAYQLIRDQVSRGQRAYVVLPLIEDSEKLDLRSAVK----VHAHLSEQVFEEFTVGL 670 Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580 +HGR+S +K+ V+ SF G C++L++TTV+EVG+DV AS+++I++A+ FGLAQLHQLR Sbjct: 671 LHGRLSSSEKQGVIQSFAAGDCQVLVSTTVVEVGVDVPQASVMVIDHADRFGLAQLHQLR 730 Query: 581 GRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638 GRVGRG S C+L+ PL++ RL VL + DGF IAE DL+ R G++LG KQ Sbjct: 731 GRVGRGAAASHCVLINDSTNPLARQ---RLEVLVRSSDGFEIAEIDLRLRGPGQVLGTKQ 787 Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 SG+P +A ++LE AR +A+ +L++DP+LT Sbjct: 788 SGLPDLALASLADDGAVLEEARDEAQRLLSEDPNLT 823 >gi|282882055|ref|ZP_06290696.1| ATP-dependent DNA helicase RecG [Peptoniphilus lacrimalis 315-B] gi|281298085|gb|EFA90540.1| ATP-dependent DNA helicase RecG [Peptoniphilus lacrimalis 315-B] Length = 674 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 237/646 (36%), Positives = 369/646 (57%), Gaps = 33/646 (5%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ------LQKRRPYK----- 91 DLL+++P + D K+SE G I + S+F+ L R K Sbjct: 31 DLLYFYPRRYEDSSKILKLSE----------GIIGEKSTFRCRILSLLDNRNLRKGLSIT 80 Query: 92 -ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD 150 L+ D + E L+FF +KN G + GK ++ + RI + P I Sbjct: 81 SFLIEDDSAEAKLIFF--NNRFIKNTIDFGETYLIYGKYERFRGRIQLTSPE-IEKVDNI 137 Query: 151 VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIH 210 N I +Y+ GL+ + +I + + + + E I DL++K S +A IH Sbjct: 138 RNLGRIRGIYNQTKGLTNNNIDYLIDQVIDK-NLFEECIPNDLIKKYSLIDKNKAIKNIH 196 Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270 P K + + +++RL Y+ELL ++++L M+ + GI N+ KI + + N+P Sbjct: 197 RPENRKSY---ALSKQRLIYEELLFFELSILSMQNKNNSSHGIKFNIPNKIYE-FINNLP 252 Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T QE +KDI DM + R++QGDVGSGKT+V++I AV G Q IMAP Sbjct: 253 YKLTSGQEKVLKDITGDMQNGKSVNRLIQGDVGSGKTIVSIILSLVAVLNGYQCAIMAPT 312 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 ILA+QH+E ++ + ++++ G+ P +++ L A+G I+IGTH+L +D + Sbjct: 313 EILAKQHFENFNSLLEDYGVRIKLLVGSTPSKVKKEILTNTANGMIDILIGTHSLIEDDV 372 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 +++ L L ++DEQHRFGV QR KL K ++M+ATPIPRTL L D+DIS I Sbjct: 373 KFFNLGLNVIDEQHRFGVIQRSKLRYKNDKACNIIMSATPIPRTLSLILYADLDISIIDT 432 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNS 509 P GRK IKT+ I ++++E + ++ L+ G +AY IC IE+ ++ N SV + F Sbjct: 433 MPGGRKNIKTLAINSSQVNEALTFIEKELNAGHQAYVICSLIEDNEDFENLESVEKVFKD 492 Query: 510 LHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 L + F + +A++HGR+S +K VM+ FKN L+++TTVIEVGI+V +A++++I NA Sbjct: 493 LKKFFKNYKLALLHGRLSTDEKNKVMEDFKNRKIDLIVSTTVIEVGINVANATVMMIYNA 552 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628 E FGL+ LHQLRGRVGRG+ S CI L++ S+ S+ R+ ++ ++ DGF IA +DL+ R Sbjct: 553 ERFGLSTLHQLRGRVGRGDAQSYCI-LFNNSKSEISWRRMKIMTDSTDGFYIANKDLELR 611 Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 G+ILG++QSG+P +A P +L A DAK+IL +D DLT Sbjct: 612 GFGDILGVRQSGIPNLRLANPLKDQKILSYASTDAKNILKEDIDLT 657 >gi|88608747|ref|YP_506567.1| ATP-dependent DNA helicase RecG [Neorickettsia sennetsu str. Miyayama] gi|88600916|gb|ABD46384.1| ATP-dependent DNA helicase RecG [Neorickettsia sennetsu str. Miyayama] Length = 675 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 231/630 (36%), Positives = 346/630 (54%), Gaps = 13/630 (2%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITG-YISQHSSFQLQKR--RPYKILLN 95 +R +DLL + P F++R I+ E VTI Y F +R R +K Sbjct: 29 SRVVDLLLHKPRGFVNRCNFKAIANSVEGEFVTIEARYEGSKEHFHRSRRVKRLHKFFFK 88 Query: 96 DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL 155 D + + F+ KT + + + G + G++ M HP I S+ Sbjct: 89 DKNEDSLEVIFFTKTYLQRKLKV-GEWYLINGRMGVSAQ---MFHPDKILKLSERDKLSA 144 Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215 E Y L G++ F ++ L EW+E+ ++K+ S +A +H+P Sbjct: 145 FEPKYRLSDGITNYQFLSLVDSLLKSSKPPKEWLEQTSVRKRGLISWGKAIEQLHHPSSE 204 Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275 +FE A +RLAYDE+LA + + Q + PI +G+I + +PFS T+ Sbjct: 205 VEFE---QACKRLAYDEILAMHLVNNSLHTQVLNQKKEPIKGDGRITALLRSRLPFSLTE 261 Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 QE IK I Q RM+ +LQGDVGSGKTLV + AM AVE G Q V+++P +LA+ Sbjct: 262 GQEEVIKKIYALQGQDVRMVALLQGDVGSGKTLVVIFAMLNAVEVGKQVVLLSPTIVLAK 321 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 QH+E ++K + + ++TG R + L+ I G A +I+ THA+ I ++ L Sbjct: 322 QHFEVLQKLLPELKPV--LLTGEKIACSREQFLQDIRSGDAKVIVATHAILAVGILFFDL 379 Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 L+++DEQHRFG QR KL ++ ++L++ATPIPRT+ G I + + EKP R Sbjct: 380 GLLVIDEQHRFGANQRTKLIRENPGADLVLVSATPIPRTIGQVLFGSITLLNLREKPKSR 439 Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 + T + ++I ++IER+KV+L +G K +WICP IEE + SV ERF L +HF Sbjct: 440 PVVTTSTVTKSKIAKLIERIKVILGKGSKVFWICPVIEESENLKVISVTERFRLLKKHFA 499 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +HG +S E + +F+NG K+L+ATTV+EVG+D+ D +I+IE+A+HFGLAQ Sbjct: 500 DEVDCVHGVLSAQKMEEKLTAFRNGKTKILLATTVVEVGVDIPDVDVIVIEDADHFGLAQ 559 Query: 576 LHQLRGRVGRGEEISSCILLYHP-PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 LHQLRGRVGRG + S CILLY +++N RL +L+ + DGF IAEED K R G+I Sbjct: 560 LHQLRGRVGRGNKKSFCILLYDSQKITENGKKRLKILRESSDGFFIAEEDFKLRGVGDIF 619 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 G++QSG KF S + A +A+ Sbjct: 620 GVRQSGFYKFKFLDRPFEHSFFDSASMEAQ 649 >gi|325263998|ref|ZP_08130731.1| ATP-dependent DNA helicase RecG [Clostridium sp. D5] gi|324031036|gb|EGB92318.1| ATP-dependent DNA helicase RecG [Clostridium sp. D5] Length = 686 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 241/674 (35%), Positives = 379/674 (56%), Gaps = 24/674 (3%) Query: 11 APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEISEERI 69 + +ST +G+G+K K A DLL Y+P + D + P + E E + Sbjct: 5 SKISTLKGIGEKTQALFEK------AGVRTIGDLLRYYPRGY-DVYDDPVLVGEAVEGKT 57 Query: 70 VTITGYISQHSSFQLQKRRPYKI---LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 T+TG I QL R ++ + D TG + +++F + LKN G IT+ Sbjct: 58 ATVTGAI--FGRVQLGGSRNMQVTTLYVKDLTGTLKVIWF--RMPFLKNTLARGGIITLR 113 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 G+I + ++ ++M HP + +++ + ++ VY L GL+ + KK +++A+ L + Sbjct: 114 GRIVRKRDGLVMEHPEIFYPSAKYEEKRNTLQPVYPLTAGLTNNAVKKAMMQAMEYLDLK 173 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 E++ +++ + A IH P ++F ARERL ++E L ++L ++ Sbjct: 174 QEFLPEEIRMRYHLAEYNYAVRGIHFPETKEEF---YHARERLVFEEFLIFILSLRKLKT 230 Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + K VE K L ++P+ T +Q+ ++ +DMS + M R++QGDVGSG Sbjct: 231 REDKTENCFKFVERPEIDKFLESLPYELTNAQKKVWNEMKRDMSGPHVMSRLVQGDVGSG 290 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV--EIITGNMPQAH 363 KT+VAL+ + A G Q +MAP +LA+QHYE I + I + E++TG+M Sbjct: 291 KTIVALLGLMYAGLNGFQGAMMAPTEVLAKQHYENITSMFEKYGIPLKTELLTGSMSAKE 350 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 +R+A ERI+ G A II+GTHAL Q+ Y L LV+ DEQHRFGV+QR L K PH+ Sbjct: 351 KREAYERISSGAADIIVGTHALIQEKAVYRNLALVVTDEQHRFGVKQRETLAGKGQMPHI 410 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+M+ATPIPRTL + GD+DIS I E P+ R PIK ++ + ++ + EG+ Sbjct: 411 LVMSATPIPRTLAIILYGDLDISVIDELPSNRLPIKNCVVDTGYRNTAYRFMQKQVEEGR 470 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541 + Y ICP +E+ + +V++ L E I+ +HG+M +K+ +M++F Sbjct: 471 QCYVICPMVEDSEHLEAENVMDYTQLLKEALGERFGISYLHGKMKQAEKDEIMEAFGKNE 530 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTVIEVGIDV +A++++IENAE FGLAQLHQLRGRVGRG+ S CI + S Sbjct: 531 IQILVSTTVIEVGIDVPNATVMLIENAERFGLAQLHQLRGRVGRGKYQSYCIFM-SASKS 589 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 K + RL +L + DGF IA EDL+ R G++ GI+QSG+ F + +L+ A + Sbjct: 590 KETKERLEILNKSNDGFFIASEDLRLRGPGDLFGIRQSGLLDFSLGDVFQDSKILQKANE 649 Query: 662 DAKHILTQDPDLTS 675 A +L +DP+LT Sbjct: 650 AALELLEKDPELTD 663 >gi|238026276|ref|YP_002910507.1| ATP-dependent DNA helicase RecG [Burkholderia glumae BGR1] gi|237875470|gb|ACR27803.1| ATP-dependent DNA helicase RecG [Burkholderia glumae BGR1] Length = 803 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 249/659 (37%), Positives = 373/659 (56%), Gaps = 27/659 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D I E+ + G + + +R+ L +D Sbjct: 134 TRSIDLVLHLPMRYEDETTLTPIRELLPGEVAQTEGVVYDNEITYRPRRQLLVKLRDDDG 193 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 E+ L F +K + G+++ V G I+ + +VHP D N PL +A Sbjct: 194 AELVLRFLNFYGSQVKQMAV-GQRLRVRGDIRGGFFGLEIVHPAV---RVVDENTPLAQA 249 Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 VY G+S +K I AL+R P+ LP + LQ P++A+A +H+P Sbjct: 250 LTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEVAAAYLQPLGVPTLADAVRQLHHP 309 Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG------IPINVEGKIA 262 D + T PA R+ +DELLA Q++L ++ + P + G +A Sbjct: 310 AVDDDETALIDGTHPAWIRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRAPADA-GSLA 368 Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 ++L +PF+ T +Q + +I D++Q + M R+LQGDVGSGKT+VA +A A A++AG Sbjct: 369 ARLLAALPFALTGAQARVVDEISHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGY 428 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 QA +MAP ILA+QH ++ + + + V + G++ +R A+E A G A ++IGT Sbjct: 429 QAALMAPTEILAEQHARKLRGWLEPLGVTVAWLAGSLKAKDKRAAIEAAALGTAQLVIGT 488 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-----PHVLLMTATPIPRTLVL 437 HA+ QDS+++ +L LVIVDEQHRFGV QRL L KA PH L+M+ATPIPRTL + Sbjct: 489 HAIIQDSVEFARLGLVIVDEQHRFGVAQRLALRAKAGGPAGFQPHQLMMSATPIPRTLAM 548 Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497 T D+++S I E P GR PI T ++ R +EVI R++ G++ YW+CP IEE + Sbjct: 549 TYYADLEVSTIDELPPGRSPIVTKLVGDARREEVIARVRDAALGGRQVYWVCPLIEESET 608 Query: 498 SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556 ++ VE + +L + ++HGR++ +K +VM++F +LL+ATTVIEVG+D Sbjct: 609 LQLQTAVETYETLVAALPGIQVGLVHGRLAPAEKAAVMEAFSRNEVQLLVATTVIEVGVD 668 Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616 V +AS+++IE+AE FGLAQLHQLRGRVGRG S+C+L+Y PLS RL ++ T D Sbjct: 669 VPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASACVLMYSGPLSIAGRERLKTMRETND 728 Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 GF IA DL+ R GE LG +QSG A E L+E AR+ A ++ + PD+ + Sbjct: 729 GFEIARRDLEIRGPGEFLGARQSGAAMLRFADLERDGWLIEPAREAAGVLIARYPDVVT 787 >gi|240080014|ref|ZP_04724557.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae FA19] gi|268596156|ref|ZP_06130323.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae FA19] gi|268549944|gb|EEZ44963.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae FA19] Length = 680 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 228/600 (38%), Positives = 341/600 (56%), Gaps = 7/600 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H + R+ + + DG+G + L F + G++I G+IK M Sbjct: 65 HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP + L VY GL+ ++II AL P L + + LL + Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLGRLK 182 Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 P +AE+ ++H+P + + T PA +RL +DELLA Q+++ L R++ Sbjct: 183 LPRLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGTAAA 242 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + +G + Q + + +PF+ T +QE + +I +DM+Q + M R+LQGDVGSGKT+VA ++ Sbjct: 243 LRGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSA 302 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A+E+G Q +MAP ILA+QH+ K++ + I V + G++ + + +A ++A G Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVCLFGSLRKKPKDEAKAKLADG 362 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 I +GTHALF D + ++ L L IVDEQHRFGV QRL L K H L+M+ATPIPRT Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLSIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I E P GR PIKT ++ R EV + +G++AYW+CP IEE Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEE 482 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ E L +I ++HGRM +K VM F G +L+ATTVIEV Sbjct: 483 SETLQLQTAAETLARLQTALPEPNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEV 542 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +A++++IE+AE GLAQLHQLRGRVGRG S C+LL+ PL + + RL V+ Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA +DL R GE LG +QSG+P A+ E LLE AR+ A ++ Q+P++ Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 662 >gi|289578495|ref|YP_003477122.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter italicus Ab9] gi|289528208|gb|ADD02560.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter italicus Ab9] Length = 681 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 251/674 (37%), Positives = 389/674 (57%), Gaps = 22/674 (3%) Query: 8 PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67 PL + +GVG K + L K+ DLLFY P + +R KI +++ Sbjct: 2 PLNLDIQYVKGVGPKRAKLLKKL------GIQTVEDLLFYFPKDYENRSSILKIEDLTVG 55 Query: 68 RIVTITGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 T GYI + K K+ + DGTG + L+++ + +KN G + + Sbjct: 56 EKQTFKGYIVGSPREIKTSKVIITKVPVKDGTGAVELVWYNQ--PYIKNSLKIGEEYIIN 113 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LP 183 GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ AL + Sbjct: 114 GKLRFKYGQLIVENP--VIEKSEDFKLNTGRIVPIYGLTEGLTQNAIRKIMFNALKEYVQ 171 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 + E+ +++ L +K I A I+ P+ + A+ R Y EL Q+AL LM Sbjct: 172 EVEEFFDEEFLSEKRLMDIKNALININFPQNE---AYLEQAKYRFKYQELFLLQMALFLM 228 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 + K++ GI E + + +PF T++Q +K+I+ DM+ M R++QGDVG Sbjct: 229 KGSAKEKKGIKF--ERVDLKPFIMGLPFKLTQAQVKVLKEIIADMNSHKVMNRLVQGDVG 286 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + +++G++ ++ Sbjct: 287 SGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYSTLKELFKNTDIKIGLLSGSLSPSN 346 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 +++ LE+I G II+GTHAL +D + + L L I DEQHRFGV+QR LTQK P V Sbjct: 347 KKEVLEKIKKGDYDIIVGTHALIEDDVVFNNLGLCITDEQHRFGVRQRALLTQKGKNPDV 406 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E + +G+ Sbjct: 407 LVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKKGR 466 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541 + Y +CP IEE + + S + +++ + + ++HG+M+D +KE V++ F NG Sbjct: 467 QVYVVCPLIEESDKISAMSAEIVYREIYKDAFKEAKVGLLHGKMADSEKEKVIEEFVNGK 526 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L++TTVIEVG++V +A+++IIENAE FGLAQLHQLRGRVGR E S CIL+ + S Sbjct: 527 IDILVSTTVIEVGVNVPNATVMIIENAERFGLAQLHQLRGRVGRSEFQSYCILISYSN-S 585 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 + RL VL T DGF IAE+DL+ R GE LG++Q G+P+F IA +L+I +K Sbjct: 586 DVAKKRLGVLAQTSDGFKIAEKDLEIRGPGEFLGLRQHGLPEFKIANIVEDIDILKIVQK 645 Query: 662 DAKHILTQDPDLTS 675 D + ++ +DP L + Sbjct: 646 DVEELVKKDPKLEN 659 >gi|42523773|ref|NP_969153.1| ATP-dependent DNA helicase RecG [Bdellovibrio bacteriovorus HD100] gi|39575980|emb|CAE80146.1| ATP-dependent DNA helicase RecG [Bdellovibrio bacteriovorus HD100] Length = 701 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 233/654 (35%), Positives = 378/654 (57%), Gaps = 15/654 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK--RRPYKILLNDGTGE 100 DL ++P ++ D+ IS + + IV+I + S + + R+ Y +L+ D +G+ Sbjct: 39 DLFEFYPRAYEDQRAARNISSLRPDDIVSIKATVVAVHSVNMGRSARKMYDVLVRDASGQ 98 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF----HNSQDVNFPLI 156 I +F + F ++ V GK+ + + R+ HP +QD PL Sbjct: 99 IHCKYFRVPYKGYFERFKPFTEVRVVGKVTEYRGRLEFHHPDIKDVEPDEETQDALIPL- 157 Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPE-WIEKDLLQKKSFPSIAEAFNIIH--NPR 213 Y+ GL+ K++ A +++ PE K + +K + +A IH +P Sbjct: 158 ---YTEIEGLATAKIMKLVRSAFAQIEEWPEEAFPKWMREKYNLIPRKDALKDIHFPDPN 214 Query: 214 KAKDF-EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272 KAK + E+ + A++R+ +DE ++ L + F+KE I G+ + +L+++PF Sbjct: 215 KAKQYSEFKTAAQKRIIFDEFFWLELYLASKKAGFQKEGAPQIRNSGEKMRALLQSLPFE 274 Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332 T +Q+ +I D+ + + M R++QGDVGSGKTLV+ +A A E+G Q+ +MAP I Sbjct: 275 MTGAQKRVFTEIKADLEKGHPMHRMVQGDVGSGKTLVSFMAAIYAAESGYQSCLMAPTEI 334 Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392 LA+QH++ +K + I + ++ G + R++ L + G+ +IIGTHAL +D +Q+ Sbjct: 335 LAEQHFKNARKVLEPLGIRLGLLVGKSKASERKQLLAALGAGEIDLIIGTHALIEDEVQF 394 Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452 L LVI+DEQHRFGV+QR L K +PH L+MTATPIPRTL +T GD+D+S I E P Sbjct: 395 ANLGLVIIDEQHRFGVEQRGVLKNKGNSPHFLVMTATPIPRTLAMTVYGDLDVSIIDEMP 454 Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512 AGR PI+T ++ + ++ + + +G++AY + P +EE ++ + + V + L E Sbjct: 455 AGRSPIQTRATFESKRPQALQFMLEQIQKGRQAYIVYPLVEESEKIDLKDAVSEYEKLKE 514 Query: 513 HFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 + I ++HG+M +K+ VMD F+ ++L++TTVIEVG+DV +A+I+IIE+AE F Sbjct: 515 LYPQLKIGLLHGKMKPDEKDQVMDQFRKNEIQVLVSTTVIEVGVDVPNANIMIIEHAERF 574 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631 GL+QLHQLRGRVGRGE S CIL+ +S+ R +++ T DGF IAE DL+ R G Sbjct: 575 GLSQLHQLRGRVGRGEHKSFCILIMGYAVSEEGKARTEMMEKTTDGFKIAEFDLEMRGPG 634 Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685 E +G KQSG+ F +A ++L+ AR+ A +L +DP L+ V Q ++ L Sbjct: 635 EFMGTKQSGLSGFKLANLVRDMAILQEAREAAFEVLRKDPRLSYVENQGLKAEL 688 >gi|33865627|ref|NP_897186.1| ATP-dependent DNA helicase RecG [Synechococcus sp. WH 8102] gi|33632797|emb|CAE07608.1| ATP-dependent DNA helicase [Synechococcus sp. WH 8102] Length = 836 Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust. Identities = 245/696 (35%), Positives = 386/696 (55%), Gaps = 47/696 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L +PL+ +GVG K + L+ I DLL ++P +D R +I + Sbjct: 137 LDSPLTQLQGVGPKLAGRLAAI------GLLLVRDLLKHYPRDHVDYATRRRIEALVVGE 190 Query: 69 IVTITGYISQHSSFQLQKRRP----YKILLNDGTGEITLLFF-----YRKTEMLKN---V 116 TI I + + F + R P ++ L D TG I + F + LK + Sbjct: 191 TATIVATIRRCNGF-VSPRNPNLSILELQLQDPTGRIKVTRFLAGKRFSSPAYLKGQQRL 249 Query: 117 FFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV-----NFPLIEAVYSLPTGLSVDLF 171 + +G + V+G IK+ P S + N + VY L G++ D F Sbjct: 250 YPQGATVAVSGLIKEGPYGATFQDPLIEVLESSNAEVRSRNIGRLMPVYGLTEGVAADRF 309 Query: 172 KKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231 +++I + L P+ + + + S S+ EAF +H P D AR RL +D Sbjct: 310 RQLIDQVLPLARAWPDPLNQTERRDWSLVSLPEAFQGLHAP---DDPSQLDQARRRLVFD 366 Query: 232 ELLAGQIALLLMRKQFKKEIGIP----INVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287 E L LL R++ + P I + K L ++PF+ T +QE +I D Sbjct: 367 EFLL-LQLGLLRRRRTLSQRPCPQLELIRRGDGLVGKFLASLPFAFTAAQERVFGEIEAD 425 Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347 + + M R++QGDVGSGKT+VA+ A+ + + +G Q +MAP +LA+QH+ + ++ Sbjct: 426 LQRSQPMARLVQGDVGSGKTVVAIAALLSTISSGWQGALMAPTEVLAEQHHRNLCRWLPP 485 Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407 + VE++TG P+ RR+ L+ +A+G +++GTHAL +D + + +L LV+VDEQHRFG Sbjct: 486 LHVTVELLTGATPKTKRRQLLDDLANGSLKVLVGTHALLEDPVVFSRLGLVVVDEQHRFG 545 Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467 V QR +L K PH+L MTATPIPRTL L+ GD+D+S+I E P GR PI+T ++ + Sbjct: 546 VHQRDRLLNKGLQPHLLTMTATPIPRTLALSLHGDLDVSQIDELPPGRTPIRTAMLTAAQ 605 Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS------SIAII 521 + E ++ ++ G++AY + P +EE ++ RS VE +H S ++ ++ Sbjct: 606 RSQAYELIREEVARGQRAYVVLPLVEESEKLELRSAVE----VHAELASEVFPELTLGLL 661 Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581 HGR++ DK+SV+ F +G ++L++TTV+EVG+DV +AS+++I++AE FGLAQLHQLRG Sbjct: 662 HGRLNSADKQSVLRDFADGRSQVLVSTTVVEVGVDVPEASVMVIDHAERFGLAQLHQLRG 721 Query: 582 RVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639 RVGRG S C+L+ PL++ RL VL + DGF IAE DL+ R G++LG +QS Sbjct: 722 RVGRGAAASHCLLINGSSNPLARQ---RLDVLVCSNDGFEIAEMDLRLRGPGQVLGTRQS 778 Query: 640 GMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 G+P +A ++LE AR A+ ++ QDPDL++ Sbjct: 779 GLPDLALASLADDGAVLEDARAAAQQLMEQDPDLSA 814 >gi|329905130|ref|ZP_08274049.1| ATP-dependent DNA helicase RecG [Oxalobacteraceae bacterium IMCC9480] gi|327547690|gb|EGF32475.1| ATP-dependent DNA helicase RecG [Oxalobacteraceae bacterium IMCC9480] Length = 699 Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust. Identities = 250/652 (38%), Positives = 361/652 (55%), Gaps = 29/652 (4%) Query: 42 IDLLFYHPSSFIDRHYRPKISEIS--EERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99 +DL+ + P + D I + S + V + G I+ Q + RR + L D TG Sbjct: 35 MDLVLHLPMRYEDETRIVLIRDASFMGGQSVQVEGMITA-CEVQYKPRRQLVVTLADETG 93 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEA 158 ++TL F LK + EG ++ G+++ MVHP Y + P+ + Sbjct: 94 QVTLRFLNFYGSQLKQMA-EGNRVRARGELRHGFFGPEMVHPLYKM-VLEGAPLPMALTP 151 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEW---IEKDLLQKKSFPSIAEAFNIIHNPRKA 215 VY GL +K I A++R+ W + L++ S A ++HNP Sbjct: 152 VYPSGDGLPQTYLRKAIASAMARI----SWRDTLAPALVESLDLMSFEAAVRLLHNPPPE 207 Query: 216 KDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271 D + + PA R+ +DELLA Q++L + + + P+ V G ++ R +PF Sbjct: 208 VDESALEDRSHPAWVRMKFDELLAQQLSLKRAQVARRAKGAAPLPVIGALSLAFQRVLPF 267 Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331 + T +Q+ + I D+ M R+LQGDVGSGKT+VA +A A A+++G QAV+MAP Sbjct: 268 ALTGAQQRVLDQIRHDLQAPFPMQRLLQGDVGSGKTVVAALAAAQAIDSGFQAVLMAPTE 327 Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391 ILA QH+ I + + I V +TG++ + + A ERI G A ++IGTHAL QD + Sbjct: 328 ILADQHFRKIAGWLEPLGIEVVWLTGSLKKKDKLAAKERIEAGTAQLVIGTHALIQDDVV 387 Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATA-----------PHVLLMTATPIPRTLVLTSL 440 + +L LVIVDEQHRFGV QRL L K PH L+M+ATPIPRTL +T Sbjct: 388 FARLGLVIVDEQHRFGVGQRLTLRNKGLGLSNGIDPTQIVPHQLMMSATPIPRTLAMTYY 447 Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500 D+++S I E P GR PI T +I NR DEVIER+ V EG++AYW+CP IEE + Sbjct: 448 ADLEVSVIDELPPGRTPIVTRVIDQNRRDEVIERVHVAALEGRQAYWVCPLIEESEALQL 507 Query: 501 RSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 ++ + +L + ++HGR+ +K++VMD+F ++L+ATTVIEVG+DV + Sbjct: 508 QTATDTHATLSAALPDLQVGLVHGRLKPQEKQAVMDAFTRAEIQVLVATTVIEVGVDVPN 567 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619 AS+++IE+AE GL+QLHQLRGRVGRG S C+LLY PL + + RL ++ T DGF Sbjct: 568 ASLMVIEHAERSGLSQLHQLRGRVGRGSAASVCLLLYQSPLGQVAKQRLGTMRETTDGFE 627 Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671 IA DL+ R GE LG +QSG A E L+E AR A +L DP Sbjct: 628 IARRDLQIRGPGEFLGARQSGQAMLRFADLETDQWLVEQARTVAIDLLRDDP 679 >gi|91781857|ref|YP_557063.1| ATP-dependent DNA helicase RecG [Burkholderia xenovorans LB400] gi|91685811|gb|ABE29011.1| ATP-dependent DNA helicase RecG [Burkholderia xenovorans LB400] Length = 768 Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust. Identities = 246/644 (38%), Positives = 363/644 (56%), Gaps = 29/644 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D I + I G + + +R+ L +D Sbjct: 95 TRDIDLVLHLPMRYEDETSLTPIGHLLPGGIAQTEGVVFDNEIAYRPRRQLLVKLRDDAG 154 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 E+ L F +K + G ++ V G ++ + MVHP D + PL +A Sbjct: 155 DELVLRFLNFYGSQVKQMAI-GARLRVRGDVRGGFFGMEMVHPAV---RVVDEDTPLPQA 210 Query: 159 ---VYSLPTGLSVDLFKKIIVEALSR--LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 VY G++ +K I ALSR LP +LPE + + L+ PS+ +A +H+P Sbjct: 211 LTPVYPSTAGVTQAYLRKSIDNALSRTSLPELLPEPVARTWLEPLGVPSLMDAVRTLHHP 270 Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG--IP---INVEGKIAQ 263 D + T PA R+ ++ELLA Q++L ++ + +P + E + Sbjct: 271 GVQSDETALIDGTHPAWVRIKFEELLAQQMSLKRAHEERRTRAAPAMPRRKLGDESALVA 330 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 ++L+ +PFS T +QE +I D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q Sbjct: 331 RLLKALPFSLTAAQERVGGEIALDLTQPHPMQRLLQGDVGSGKTIVAALAAAQAIDAGYQ 390 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 A +MAP ILA+QH ++ + + + V + G++ +R A+E A G A ++IGTH Sbjct: 391 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKTREKRAAIEAAALGTAQLVIGTH 450 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---------APHVLLMTATPIPRT 434 A+ QD++++ +L LVIVDEQHRFGV QRL L KA PH L+M+ATPIPRT Sbjct: 451 AIIQDAVEFARLGLVIVDEQHRFGVAQRLALRAKAQNAADGARDFQPHQLMMSATPIPRT 510 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L +T D+D+S I E P GR PI T ++ R +EVI R++ G++ YW+CP IEE Sbjct: 511 LAMTYYADLDVSTIDELPPGRTPILTKLVSDARREEVIGRVREAALTGRQVYWVCPLIEE 570 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ VE + +L + ++HGR++ +K +VMD+F +LL+ATTVIEV Sbjct: 571 SETLQLQTAVETYETLVAALPELKVGLVHGRLAPAEKAAVMDAFTRNEVQLLVATTVIEV 630 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+LLY PLS + RL ++ Sbjct: 631 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAASVCVLLYTGPLSMTARARLQTMRE 690 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 T DGF IA DL+ R GE LG +QSG A E L+E Sbjct: 691 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDQWLIE 734 >gi|309781309|ref|ZP_07676045.1| ATP-dependent DNA helicase RecG [Ralstonia sp. 5_7_47FAA] gi|308919722|gb|EFP65383.1| ATP-dependent DNA helicase RecG [Ralstonia sp. 5_7_47FAA] Length = 757 Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust. Identities = 246/664 (37%), Positives = 369/664 (55%), Gaps = 40/664 (6%) Query: 40 RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ------HSSFQLQKRRPYKIL 93 R +DL+ + P + D + I+E TG+ +Q + + RR + Sbjct: 84 RDVDLVLHLPMRYEDET---TLLTIAEATARANTGWAAQVEGTVTRNEVAFRPRRQLVVH 140 Query: 94 LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153 + D +GE+ L F +K + EG ++ V G+++ MVHP + ++D Sbjct: 141 IADDSGELVLRFLNFYGSQVKQMA-EGVRLRVRGEVRGGFFGAEMVHP-TVRAVAEDEPL 198 Query: 154 P-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP----SIAEAFNI 208 P + VY G++ +K I+ AL+R P LPE + L+ P + A+A + Sbjct: 199 PDRLTPVYPSTAGVAQAYLRKAILNALARTP-LPETLPNSLITGPLAPLKLMTPADAVRL 257 Query: 209 IHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPI----NVEG 259 +H P D E T PA R+ +DELL+ Q++L R Q + + PI +G Sbjct: 258 LHQPTPDVDEHSLVERTHPAWLRIKFDELLSQQLSL--KRAQAARRMRNAPILRDSGKDG 315 Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319 +A + + +PF T +Q +I D++ M R+LQGDVGSGKT++A +A A++ Sbjct: 316 LLA-RFMNALPFKLTGAQARVWDEIRADLAHPYPMQRLLQGDVGSGKTVIAALAACQAID 374 Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379 AG QA +MAP +LA+QHY + + + + + + G++ + + +A R+A G A ++ Sbjct: 375 AGWQAALMAPTELLAEQHYRKLSAWLEPLGVDIVWLAGSLKRKQKDEAAARVAAGTAQLV 434 Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----------APHVLLMTAT 429 IGTHAL QD++ + +L L +VDEQHRFGV QRL L KA+ PH L+M+AT Sbjct: 435 IGTHALIQDAVTFARLGLAVVDEQHRFGVAQRLALRGKASNGDAPAANAQVPHQLMMSAT 494 Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489 PIPRTL +T D+D+S I E P GR PI T ++ R DEVIER+ EG++ YW+C Sbjct: 495 PIPRTLAMTYYADLDVSAIDELPPGRTPIVTRLVNDARRDEVIERIYAAAREGRQVYWVC 554 Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548 P IEE + ++ VE F +L + + ++HGR+ +K +VM +F G +L+AT Sbjct: 555 PLIEESEALQLQTAVETFETLSQSLQGLKVGLVHGRLPSAEKAAVMSAFAGGDLHVLVAT 614 Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608 TVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+LLY PLS + RL Sbjct: 615 TVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCVLLYQAPLSPTAKQRL 674 Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668 ++ T DGF IA DL+ R GE LG +QSG A L+E A+ A +L Sbjct: 675 QTMRETTDGFEIARRDLEIRGPGEFLGARQSGEAMLRFADLNHDAWLVEFAQGAADAMLA 734 Query: 669 QDPD 672 + P+ Sbjct: 735 RFPE 738 >gi|261378249|ref|ZP_05982822.1| ATP-dependent DNA helicase RecG [Neisseria cinerea ATCC 14685] gi|269145330|gb|EEZ71748.1| ATP-dependent DNA helicase RecG [Neisseria cinerea ATCC 14685] Length = 680 Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust. Identities = 231/600 (38%), Positives = 344/600 (57%), Gaps = 7/600 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H + R+ + + DG+G + L F + G++I G+IK + M Sbjct: 65 HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQMAVGKRIRAVGEIKHGFHGDEM 124 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP S + L VY GL+ ++II AL P L + + LL + Sbjct: 125 IHPKIRDAESSGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDMLPDALLDRLK 182 Query: 199 FPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 P +AE+ ++H+P + S PA +RL +DELLA Q+++ L R++ Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGALPAWQRLKFDELLAQQLSMRLARQKRVSGTAAA 242 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + +G + Q + +PF+ T +QE + +I +DM+Q + M R+LQGDVGSGKT+VA ++ Sbjct: 243 LGGDGTLTQALRHALPFALTDAQERVVSEIRRDMAQTHPMHRLLQGDVGSGKTIVAALSA 302 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A+E+G QA +MAP ILA+QH+ K++ + + V ++G+ + + +A ++A G Sbjct: 303 LTAIESGAQAAVMAPTEILAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLAEG 362 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 I +GTHALF D +++ L LVIVDEQHRFGV QRL L K H L+M+ATPIPRT Sbjct: 363 TVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLALKNKGRDVHQLMMSATPIPRT 422 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I E P GR PIKT ++ R EV + + +G++AYW+CP IEE Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIEE 482 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ E L +I ++HGRM +K VM F G +L+ATTVIEV Sbjct: 483 SETLQLQTATETLEQLQAALPELNIGLVHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEV 542 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +A++++IE+AE GLAQLHQLRGRVGRG S C+LL+ PLS+ + RL V+ Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYE 602 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA +DL R GE LG +QSG+P A E LLE AR+ A ++ Q+P++ Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEEDLHLLEQAREIAPMLIEQNPEI 662 >gi|187930023|ref|YP_001900510.1| ATP-dependent DNA helicase RecG [Ralstonia pickettii 12J] gi|187726913|gb|ACD28078.1| ATP-dependent DNA helicase RecG [Ralstonia pickettii 12J] Length = 715 Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust. Identities = 246/664 (37%), Positives = 369/664 (55%), Gaps = 40/664 (6%) Query: 40 RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ------HSSFQLQKRRPYKIL 93 R +DL+ + P + D + I+E TG+ +Q + + RR + Sbjct: 42 RDVDLVLHLPMRYEDET---TLLTIAEATARANTGWAAQVEGTVTRNEVAFRPRRQLVVH 98 Query: 94 LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153 + D +GE+ L F +K + EG ++ V G+++ MVHP + + D Sbjct: 99 IADDSGELVLRFLNFYGSQVKQMA-EGVRLRVRGEVRGGFFGAEMVHP-TVRAVADDEPL 156 Query: 154 P-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP----SIAEAFNI 208 P + VY G++ +K I+ AL+R P LPE + L+ P + A+A + Sbjct: 157 PDRLTPVYPSTAGVAQAYLRKAILNALTRTP-LPETLPNSLVTGPLAPLKLMTPADAVRL 215 Query: 209 IHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPI----NVEG 259 +H P D E T PA R+ +DELL+ Q++L R Q + + PI +G Sbjct: 216 LHQPMPDVDEHSLVERTHPAWLRIKFDELLSQQLSL--KRAQAARRMRNAPILRDSGKDG 273 Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319 +A + + +PF T +Q ++I D++ M R+LQGDVGSGKT++A +A A++ Sbjct: 274 LLA-RFMDALPFKLTGAQARVWEEIRADLAHPYPMQRLLQGDVGSGKTVIAALAACQAID 332 Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379 AG QA +MAP +LA+QHY + + + + + + G++ + + +A R+A G A ++ Sbjct: 333 AGWQAALMAPTELLAEQHYRKLSAWLEPLGVDIVWLAGSLKRKQKDEAAARVAAGTAQLV 392 Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----------APHVLLMTAT 429 IGTHAL QD++ + +L L +VDEQHRFGV QRL L KA+ PH L+M+AT Sbjct: 393 IGTHALIQDAVTFARLGLAVVDEQHRFGVAQRLALRGKASNGDGPAANVQVPHQLMMSAT 452 Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489 PIPRTL +T D+D+S I E P GR PI T ++ R DEVIER+ EG++ YW+C Sbjct: 453 PIPRTLAMTYYADLDVSAIDELPPGRTPIVTRLVNDARRDEVIERIYAAAREGRQVYWVC 512 Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548 P IEE + ++ VE F +L + + ++HGR+ +K +VM +F G +L+AT Sbjct: 513 PLIEESEALQLQTAVETFETLSQSLQGLKVGLVHGRLPSAEKAAVMSAFAGGDLHVLVAT 572 Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608 TVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+LLY PLS + RL Sbjct: 573 TVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCVLLYQAPLSPTAKQRL 632 Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668 ++ T DGF IA DL+ R GE LG +QSG A L+E A+ A +L Sbjct: 633 QTMRETTDGFEIARRDLEIRGPGEFLGARQSGEAMLRFADLNQDAWLVEFAQGTADEMLA 692 Query: 669 QDPD 672 + P+ Sbjct: 693 RFPE 696 >gi|217076377|ref|YP_002334093.1| ATP-dependent DNA helicase RecG [Thermosipho africanus TCF52B] gi|217036230|gb|ACJ74752.1| ATP-dependent DNA helicase RecG [Thermosipho africanus TCF52B] Length = 769 Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust. Identities = 250/684 (36%), Positives = 389/684 (56%), Gaps = 40/684 (5%) Query: 2 RPSFLNPLFAPLSTFRGVG-KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 + S L PL P+ +G+G K+ FL +N N + LL + P + DR Sbjct: 87 KSSDLKPLDTPIKYVKGIGPKRAQKFLK--LNVNNVEQ-----LLNFFPRDYEDRRRIIP 139 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 I + E+ V TG ++ + +L+DG +I L +F + F EG Sbjct: 140 IPLLREDDKVVTTGKLTGVEKVKKGNLTIVSAVLSDGMYQILLKWFNQD-------FMEG 192 Query: 121 -------RKITVTGKIKKLKNRIIMVHPHYI--FHNSQDVNFPLIEAVYSLPTGLSVDLF 171 +K+ V G +KK + +H I F+ ++ FP +Y L GL+ + Sbjct: 193 ILKGLLRKKLYVFGTVKKGFYGSLEIHNPEIELFNENKREIFP----IYPLTEGLNQNTV 248 Query: 172 KKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231 ++II E + + E + DL+ K+ + +A+ +H PR +F + AR RLAY+ Sbjct: 249 RRIISENIYNIYNFKEHLPDDLISKRDLLDVYQAYTGMHFPRS--NFHKKA-ARYRLAYE 305 Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 E+L Q+A LL +K+ +K GI GK + +++ ++ F T +Q+ A ++I D+ Sbjct: 306 EILYLQVAFLLSKKENEKIGGISKKFNGKYSTELINSLSFELTNAQKKAYEEIKNDLKSD 365 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351 M R+LQGDVGSGKT+V+ +AM EAG Q+ +M P ILA Q+++ I + I Sbjct: 366 KPMNRLLQGDVGSGKTIVSELAMLDNYEAGFQSAVMVPTSILAIQNFKKIYDHFSRFGIK 425 Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411 V ++ G + + + +R+ G +++GTHAL Q+ + + L LV++DEQHRFGV+QR Sbjct: 426 VALLIGATSNSEKERIKQRLKDGDIDVVVGTHALIQEDVHFKNLGLVVIDEQHRFGVEQR 485 Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471 +L K L+MTATPIPRTL L+ GD+D+S I E P GRKPIKT ++ ++I+EV Sbjct: 486 KELISKGKLVDTLVMTATPIPRTLSLSLYGDLDVSIIDEMPKGRKPIKTFVVHQSKIEEV 545 Query: 472 IERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMS 526 K V+SE G +AY + P I+E ++ +S + L + + I +IHG+MS Sbjct: 546 ---YKFVISEVENGGQAYIVYPLIDESEKLAVKSATSMYEVLTKEYFPDIPVGLIHGKMS 602 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 D +K+ +M F +G K+L++T+VIEVGIDV A++I+IENAE FGLAQLHQLRGRVGRG Sbjct: 603 DSEKDDIMYKFASGEIKILVSTSVIEVGIDVPQATVIVIENAERFGLAQLHQLRGRVGRG 662 Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646 + S C L +S+ ++ RL+ +T DGF I+E DLK R GE LG++Q G+P+F + Sbjct: 663 NKQSYCYLTVG-NVSREAFERLNFFASTNDGFKISEFDLKLRGPGEFLGVRQHGLPEFKV 721 Query: 647 AQPELHDSLLEIARKDAKHILTQD 670 A ++ +AR+DAK+I+ + Sbjct: 722 ADIINDIDIIMVAREDAKYIIENE 745 >gi|51892522|ref|YP_075213.1| ATP-dependent DNA helicase RecG [Symbiobacterium thermophilum IAM 14863] gi|51856211|dbj|BAD40369.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863] Length = 709 Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust. Identities = 240/703 (34%), Positives = 394/703 (56%), Gaps = 23/703 (3%) Query: 5 FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64 F +PL P+ +G+G + L+K G A DL+ P ++ D I++ Sbjct: 17 FGDPLSMPVQYLKGIGPARARDLAK---QGIAT---VRDLIERVPRAYRDYSQIKPIAQA 70 Query: 65 SEERIVTITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123 + ++ G + +++ +++++DG+G ++F + + + F G K+ Sbjct: 71 QNGQPESLMGTVVMVDDRRVRGNLHLTRVIISDGSGTAAGVWFNQPWQAKR--FPVGMKV 128 Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL----IEAVYSLPTGLSVDLFKKIIVEAL 179 G +++ +I + +P + + + + PL I VY L GL+ ++ + AL Sbjct: 129 LFAGTVERRGAQIQITNPEWEIIDEESSSDPLHAGRIVPVYPLTGGLNPRDVRRAVYLAL 188 Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 + ++P+ I + +++ AEA+ IH P E AR LA++EL Q+ Sbjct: 189 QTAADLMPDTIPGPVRERQGLMPAAEAWRAIHFPDSGGQRER---ARATLAFEELFVLQV 245 Query: 239 ALLLMRKQ-FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 L L+R+Q ++ GI +G++ +++ +PF T +QE I+ + DM M R+ Sbjct: 246 GLALVRRQTVVEQAGIAHGPDGEVTRRLRAGLPFRLTAAQERVIRQVAADMESSRPMNRL 305 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 +QGDVGSGKT+VA+ A+A AV++G Q +MAP ILA+QHY +++ + V +++G Sbjct: 306 VQGDVGSGKTMVAVFALAKAVDSGHQGALMAPTEILAEQHYLNLRRIFAPLGVEVVLVSG 365 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 ++ + R L + G AHI +GTHAL +D + + L LVI DEQHRFGV+QR +L QK Sbjct: 366 SLTKKERDANLGLLQMGAAHIAVGTHALIEDRVAFKDLSLVITDEQHRFGVRQRARLQQK 425 Query: 418 A-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL- 475 P L+MTATPIPRTL LT GD+D+S I E P GR+P+ T P + +V + L Sbjct: 426 GEVMPDTLVMTATPIPRTLALTLYGDLDVSVIDELPPGRRPVGTYWRPESARRQVYDHLM 485 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 + + G++ Y +CP IEE + ++ E + L + + ++HGR+ +KE+VM Sbjct: 486 RTEVPAGRQGYVVCPLIEESDKLQAQAATEWYERLKAQYPDVRLGLLHGRLRPAEKEAVM 545 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 ++F+ G ++L+ TTVIEVG+DV +A+++IIE A+ FGLAQLHQLRGRVGRG S C+L Sbjct: 546 EAFRAGEIQVLVTTTVIEVGVDVPNATMMIIEGADRFGLAQLHQLRGRVGRGSHQSYCVL 605 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 + P + + RL +++ DGF +AE+DL+ R GE G +Q GMP +A P + Sbjct: 606 IADPK-TAEARERLMIMQKYSDGFALAEKDLELRGPGEFFGTRQHGMPDLKVANPIADLA 664 Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFI 697 +LE AR +A ++ +DP L Q++R + + E F FI Sbjct: 665 ILERARAEAMRLVEEDPHLRLPEHQALRQAVK-ERLGEQFGFI 706 >gi|241664128|ref|YP_002982488.1| ATP-dependent DNA helicase RecG [Ralstonia pickettii 12D] gi|240866155|gb|ACS63816.1| ATP-dependent DNA helicase RecG [Ralstonia pickettii 12D] Length = 715 Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust. Identities = 246/664 (37%), Positives = 369/664 (55%), Gaps = 40/664 (6%) Query: 40 RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ------HSSFQLQKRRPYKIL 93 R +DL+ + P + D + I+E TG+ +Q + + RR + Sbjct: 42 RDVDLVLHLPMRYEDET---TLLTIAEATARANTGWAAQVEGTVTRNEVAFRPRRQLVVH 98 Query: 94 LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153 + D +GE+ L F +K + EG ++ V G+++ MVHP + ++D Sbjct: 99 IADDSGELVLRFLNFYGSQVKQMA-EGVRLRVRGEVRGGFFGAEMVHP-TVRAVAEDEPL 156 Query: 154 P-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP----SIAEAFNI 208 P + VY G++ +K I+ AL+R P LPE + L+ P + A+A + Sbjct: 157 PDRLTPVYPSTAGVAQAYLRKAILNALARTP-LPETLPNSLITGPLAPLKLMTPADAVRL 215 Query: 209 IHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPI----NVEG 259 +H P D E T PA R+ +DELL+ Q++L R Q + + PI +G Sbjct: 216 LHQPSPDVDEHSLVERTHPAWLRIKFDELLSQQLSL--KRAQAARRMRNAPILRDSGKDG 273 Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319 +A + + +PF T +Q +I D++ M R+LQGDVGSGKT++A +A A++ Sbjct: 274 LLA-RFMNALPFKLTGAQARVWDEIRADLAHPYPMQRLLQGDVGSGKTVIAALAACQAID 332 Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379 AG QA +MAP +LA+QHY + + + + + + G++ + + +A R+A G A ++ Sbjct: 333 AGWQAALMAPTELLAEQHYRKLSAWLEPLGVDIVWLAGSLKRKQKDEAAARVAAGTAQLV 392 Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----------APHVLLMTAT 429 IGTHAL QD++ + +L L +VDEQHRFGV QRL L KA+ PH L+M+AT Sbjct: 393 IGTHALIQDAVTFARLGLAVVDEQHRFGVAQRLALRGKASNGDAPAANAQVPHQLMMSAT 452 Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489 PIPRTL +T D+D+S I E P GR PI T ++ R DEVIER+ EG++ YW+C Sbjct: 453 PIPRTLAMTYYADLDVSAIDELPPGRTPIVTRLVNDARRDEVIERIYAAAREGRQVYWVC 512 Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548 P IEE + ++ VE F +L + + ++HGR+ +K +VM +F G +L+AT Sbjct: 513 PLIEESEALQLQTAVETFETLSQSLLGLKVGLVHGRLPSAEKAAVMSAFAGGGLHVLVAT 572 Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608 TVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+LLY PLS + RL Sbjct: 573 TVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCVLLYQAPLSPTAKQRL 632 Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668 ++ T DGF IA DL+ R GE LG +QSG A L+E A+ A +L Sbjct: 633 QTMRETTDGFEIARRDLEIRGPGEFLGARQSGEAMLRFADLNHDAWLVEFAQGAADAMLA 692 Query: 669 QDPD 672 + P+ Sbjct: 693 RFPE 696 >gi|218961965|ref|YP_001741740.1| ATP-dependent DNA helicase RecG [Candidatus Cloacamonas acidaminovorans] gi|167730622|emb|CAO81534.1| ATP-dependent DNA helicase RecG [Candidatus Cloacamonas acidaminovorans] Length = 699 Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust. Identities = 240/676 (35%), Positives = 380/676 (56%), Gaps = 36/676 (5%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75 +GVG+ + LSK+ +DL+ + P +I R + ++ ++ T Sbjct: 17 LKGVGEHRAQLLSKL------GIKTILDLMEHFPKVYISRKLSVTLGDLKPGDMLAFTAV 70 Query: 76 ISQHSSFQLQK-RRPYKILLNDG-TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133 IS Q K R I ++DG G I F Y + + +F GR + + G I + Sbjct: 71 ISWVDVHQTAKGRNILSIGVSDGKVGIICSWFTY--PPVYEKMFLPGRLVWLNGTITEFN 128 Query: 134 NRIIMVHPHY-IFHNSQDVNFPL-----IEAVYSLPTGLSVDLFKKIIVEALSRLP-VLP 186 ++ MVHP + + + +D + VY L G++ L +++I A + + Sbjct: 129 GQLEMVHPEFELIDDWEDTKEDFWKNREVLPVYPLTEGINQKLMRRLIYNAFALYAGFIE 188 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + ++++ K F A +H + + E R R AY++ Q+ L K Sbjct: 189 EKLPENIIAKHHFLERKTALQKMHFGQNPAEIE---KVRRRFAYEDFFYTQL-LWARHKT 244 Query: 247 F--KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 F K GI + ++ + + +PF+ TK+Q+ + +I DM + +M R+LQGDVGS Sbjct: 245 FHTTKTKGIKFINKKQLTTGVYKKLPFTLTKAQKKVLWEIFADMCSEKQMSRLLQGDVGS 304 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKT+V L AM AVE G Q+ +MAP ILA+QHYE I + ++ V ++ G + + Sbjct: 305 GKTVVTLFAMLLAVENGYQSALMAPTEILAEQHYETITNLLKGFEVQVCLLKGGVYKG-- 362 Query: 365 RKALER-IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 ++A+++ IA G A I+IGTHAL Q I + +L VDEQHRFGV+QR KL A P + Sbjct: 363 KEAIKKAIAEGSAQIVIGTHALLQKDINFKRLGFACVDEQHRFGVEQRAKLANLAEHPDL 422 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L ++ATPIPR+L +T GD+++S + E P RKP++T+I P ++ID V ++ L+ G+ Sbjct: 423 LYLSATPIPRSLAMTVYGDLEVSILDELPPTRKPVRTIIRPSSKIDTVYSEVRQELALGR 482 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI------AIIHGRMSDIDKESVMDSF 537 + Y +CP +EE ++ + L+E+ + + +++HGRM +K+ +M F Sbjct: 483 QVYIVCPLVEESEKIALLDATK----LYEYISQKVFPEYPASLLHGRMPVKEKDMIMQKF 538 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 K G K+L++TTVIEVG+DV +AS++I+E+AE FGLAQLHQLRGRVGRG + C L+ H Sbjct: 539 KAGEIKILVSTTVIEVGVDVPNASVMIVEHAERFGLAQLHQLRGRVGRGSAQAYCYLIEH 598 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 P+S+ ++ RL+ + T DGF+IAE+DL+ R GEI G +QSG+P F A +L Sbjct: 599 SPVSEVAWQRLTTMTKTTDGFIIAEKDLELRGPGEIFGYEQSGLPVFRFANLVRDQEILR 658 Query: 658 IARKDAKHILTQDPDL 673 +AR+DA I+ DPD Sbjct: 659 LARQDAFEIVHADPDF 674 >gi|239616417|ref|YP_002939739.1| ATP-dependent DNA helicase RecG [Kosmotoga olearia TBF 19.5.1] gi|239505248|gb|ACR78735.1| ATP-dependent DNA helicase RecG [Kosmotoga olearia TBF 19.5.1] Length = 787 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 241/674 (35%), Positives = 393/674 (58%), Gaps = 43/674 (6%) Query: 17 RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76 +GVG++ + L K+ ET DLL++ P + DR +S I +R VTI + Sbjct: 116 KGVGERRAKILKKL-----GIET-VKDLLWWLPRDYEDRRRIVPLSSIVADRKVTIRAKL 169 Query: 77 SQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133 +F ++K + Y I+ ++DG G+I L +F E + + + R+ +TG KK Sbjct: 170 Q---NFSVKKVKEYVIISAVVSDGFGQIILKWF--NQEYITDRLIKEREYLITGIPKKTP 224 Query: 134 NRIIMVHPHYIFHNSQDVNFPLIEAV-----------YSLPTGLSVDLFKKIIVEALSRL 182 P+ ++N P IE + YSL G+S + +KI+ + ++ + Sbjct: 225 -----FGPY-------EMNSPEIEEITGRVPREILPLYSLSAGISQKVMRKIVRKNITNV 272 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 +L E+I +++++++ A +H P+ + + +R RLAY+EL ++A+L Sbjct: 273 RLLKEFIPAEVIKERNLLPRHHAMYTVHFPKSLYELK---ESRRRLAYEELFLFEVAVLY 329 Query: 243 MRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 R++ K + GI ++ GK+A++ + ++ F T Q A ++I +DM M R+LQGD Sbjct: 330 NREKLKTTKGGISKSISGKLAERFIDSLNFVLTGDQMRAFEEIREDMKAPTPMNRLLQGD 389 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VA +A+ EAG Q+ +M P +LA Q ++ + K + I VE++ G+ + Sbjct: 390 VGSGKTVVAELAIIDNFEAGYQSAMMVPTTVLATQQHQKLVKDLEPLGIKVELLVGSQKK 449 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 + + + +RIA G+ +++GTHAL Q+++++ L LVI+DEQHRFGV+QR L K Sbjct: 450 SQQEEIKKRIAIGEVDVVVGTHALIQENVKFKDLGLVIIDEQHRFGVKQREALMNKGALV 509 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 L+MTATPIPRTL LT+ GD+DIS ITE P GR PI+T++I R+ E+ ++ ++ Sbjct: 510 DTLVMTATPIPRTLALTAYGDLDISTITEMPPGRAPIRTMLISEKRLPELYAFIRDEVNH 569 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKN 539 G +A++I P IEE ++ + ++ + L + I + +HGRMSD +K +M FKN Sbjct: 570 GHQAFFIYPLIEESEQMDLKAATDEAERLQKEVFPDIGVELLHGRMSDEEKNRIMHRFKN 629 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 +L++T+V+EVGID+ A++++IE+ E FGLAQLHQLRGRVGR S C+L+ + Sbjct: 630 KEAMILVSTSVVEVGIDIPTATVMVIEHPERFGLAQLHQLRGRVGRSSLKSYCMLVLNSN 689 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 +S + RL T++GF +AE DL R GE +G +Q G+P FL+A LL +A Sbjct: 690 ISGEALDRLRKFAGTQNGFKLAEIDLSLRGPGEFMGTRQHGLPDFLVADIVKDSELLIMA 749 Query: 660 RKDAKHILTQDPDL 673 R DA +L +DP+L Sbjct: 750 RNDAMELLKRDPNL 763 >gi|83815366|ref|YP_444415.1| ATP-dependent DNA helicase RecG [Salinibacter ruber DSM 13855] gi|83756760|gb|ABC44873.1| ATP-dependent DNA helicase RecG [Salinibacter ruber DSM 13855] Length = 700 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 234/679 (34%), Positives = 376/679 (55%), Gaps = 34/679 (5%) Query: 43 DLLFYHPSSFIDRHYRPKISEISE-ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101 DLL ++P ++DR + ++ E VT+ G + + ++ +I+L G Sbjct: 35 DLLRFYPRRYLDRTTVTPVRQLQEGPDSVTVVGTVRSVNVVPGNNQKRLEIILEGEQGGR 94 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161 +++ ++ F EG ++ G ++K M HP + N + PL++ Sbjct: 95 MKGTWFQGVWWVRKAFDEGDRVAFHGTVEKYGRWHSMTHPDFDRLNDEG---PLLDTGRI 151 Query: 162 LP----------TGLSVDLFKKIIVE-----ALSRLPVLPEWIEK--DLLQKKSFPSIAE 204 +P GL+ ++++ + L +P+WI DL++ + Sbjct: 152 VPLYPGGEAMSNVGLTSRTVRRVLYDLFKEHGLKLTETMPDWIMDGYDLMEGRV------ 205 Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK 264 A IH P+ ++ S AR RL ++EL Q+ L M +Q ++ G + G ++ Sbjct: 206 ALRAIHFPKTQQEL---SRARRRLKFEELFFIQLLLAQMHEQQEEVAGPAFDDPGAYTRE 262 Query: 265 ILRNI-PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 +R + PF T +Q A+++I+ D+ +M R+LQGDVGSGKT+VA+ AM A ++G Q Sbjct: 263 FVREVLPFELTGAQTRALREIIGDVQTGTQMNRLLQGDVGSGKTVVAVAAMMHAYDSGYQ 322 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 + MAP ILA+QH+ ++ Y Q + ++ G+ +A R AL+ + G + + +GTH Sbjct: 323 SAFMAPTEILAEQHHANLQDYLQPLGLEPRLLIGSQTKAEREAALQAVRSGASPVAVGTH 382 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443 AL QD + + +L L +VDEQHRFGV QR ++ +K PH+LLMTATPIPR+L LT GD+ Sbjct: 383 ALIQDEVAFDRLGLAVVDEQHRFGVAQRAEMFEKGERPHMLLMTATPIPRSLALTLYGDL 442 Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503 D+SKI E P GRKP++T + R EV L L +G++A+ + P +EE ++ + + Sbjct: 443 DVSKIDEMPPGRKPVETRLRAEKRRGEVYAFLNDRLEQGEQAFVVYPLVEESEKMDLKDA 502 Query: 504 VERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 L E F ++ ++HG++S DK++ M FK G LL+ATTVIEVG+DV +A++ Sbjct: 503 ESGAQELQEKFPDYTVGLVHGQLSADDKDATMRRFKEGDIDLLVATTVIEVGVDVPNATV 562 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622 +++E+AE FGL+QLHQLRGRVGR ++ S C+L+ S+ + RL + T DGF I+E Sbjct: 563 MLVEHAERFGLSQLHQLRGRVGRSDQQSYCVLMASYKRSQEAKQRLEAMARTNDGFEISE 622 Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682 DL+ R G+ G +QSGMP IA D +LE+AR+ A ++ +DP L + + +R Sbjct: 623 TDLQIRGAGDFFGTRQSGMPDLKIADLTEDDEILEVAREAAFALIEKDPHLRADEHERLR 682 Query: 683 ILLYLYQYNE-AFQFIRAG 700 Y Y E F R G Sbjct: 683 -RRYQEDYAEHGLGFARVG 700 >gi|89895420|ref|YP_518907.1| hypothetical protein DSY2674 [Desulfitobacterium hafniense Y51] gi|89334868|dbj|BAE84463.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 693 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 252/674 (37%), Positives = 390/674 (57%), Gaps = 27/674 (4%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RP+ +P + L +GVG + + L++I DL FY P + DR + I Sbjct: 23 RPAKPSPPRS-LQFLKGVGPERAKLLAQI------GLHTVKDLFFYFPRRYEDRSLQ-SI 74 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLN-DGTGEITLLFFYRKTEMLKNVFFEG 120 E+ + + ++ G + + Q+ + + + L+ + G + ++ +T +LK + G Sbjct: 75 GELKDGELASVAGKVV---AGQIARGKLKVVKLSIEQDGRLVYAVWFNQTYILKQ-YPVG 130 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 + VTGK++ + R+ + I + I VYS LS + + I+ L Sbjct: 131 TSVIVTGKVR-WQQRVPEIQATDI-QKAGAAQPAAILPVYSETARLSSKVIRTIVQGVLD 188 Query: 181 RLPVL-PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 + P L PE++ + + K + A+A+ IH PR F ARERL ++E+L Q++ Sbjct: 189 QAPELFPEFLPPE--EGKGWVPRAQAYQEIHFPRT---FHSLGQARERLVFEEVLFLQLS 243 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 + +R ++E + + Q+ L N+PF T++Q+ I++I +DM+ M R++Q Sbjct: 244 VARLRSGVQRENSPQLKSGESLVQRFLANLPFELTQAQKRVIQEIFRDMANTQGMARLVQ 303 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT VA+ A+ AV +G Q +MAP ILA QHY+ + + V + G+ Sbjct: 304 GDVGSGKTAVAMAALLMAVGSGYQGAMMAPTEILALQHYQSLAAAFTPLGLHVVCLLGSQ 363 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 ++ R K L IA+G+AH+I+GTHAL Q+S+Q++ L L I DEQHRFGV+QR L K Sbjct: 364 TKSERDKILTEIAYGKAHVIVGTHALIQESVQFHSLGLAITDEQHRFGVKQRTSLQTKGE 423 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 PHVL++TATPIPRTL LT GD+ +S + E P GRKPI T + + + ++ + Sbjct: 424 NPHVLVLTATPIPRTLALTLYGDLQLSALDEMPQGRKPIMTRKLTERGRPSLEKFMEEQM 483 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538 +G++ Y +CP +EE + + S ERF SL E F + ++++HGRM + KE +MD+F+ Sbjct: 484 EKGRQIYVVCPLVEESENVDLISATERFQSLQERFPNRRVSLLHGRMKGVQKEEIMDAFQ 543 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G +L++TTV+EVG++V +A++++IE AE FGLAQLHQLRGRVGRG E S C LL Sbjct: 544 KGEVDILVSTTVVEVGVNVPNATVMVIEGAERFGLAQLHQLRGRVGRGSEQSYCFLLSD- 602 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 +KNS RL VL T+DGF IAEEDLK R GE+LG +Q G+ + +A L+E Sbjct: 603 --AKNS-RRLEVLCETQDGFKIAEEDLKIRGAGELLGTRQHGVMELRLADLSRDGRLVEQ 659 Query: 659 ARKDAKHILTQDPD 672 A + A+ +LT PD Sbjct: 660 AYQLAQKVLTH-PD 672 >gi|282898424|ref|ZP_06306414.1| hypothetical protein CRD_02961 [Raphidiopsis brookii D9] gi|281196590|gb|EFA71496.1| hypothetical protein CRD_02961 [Raphidiopsis brookii D9] Length = 829 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 231/650 (35%), Positives = 386/650 (59%), Gaps = 23/650 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99 DLLFY+P +ID + I E+ VTI G + + + F K + IL L D TG Sbjct: 160 DLLFYYPRDYIDYARQVNIRELKGGETVTIIGEVRRCNCFTSPKNQKLSILELMLKDQTG 219 Query: 100 EITLLFFYRKT--------EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQD 150 ++ + FY + E LK + G + G +K K + + +P + NS D Sbjct: 220 QVKVSRFYAGSRFSSKGWQEGLKRRYTPGTLVAACGLVKPSKYGLTLDNPEIEVLANSGD 279 Query: 151 V--NFPL--IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206 +F + + +Y L G+ + ++ ++ L + L + + L +K + + +A Sbjct: 280 AIDSFTIGRVVPIYGLTEGVVANAVRQAVMAVLPSVKSLQDPLPPGLRKKYNLIELKQAI 339 Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKI 265 IH P +D + A+ RL +DE Q+ LL +KQ K PI GK+ + Sbjct: 340 PNIHFP---QDSDTLKMAKRRLVFDEFFYLQVGLLQRQKQAKANQTGPILAPSGKLLDQF 396 Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 +PF TK+QE I DIL D+ + M R++QGDVGSGKT+VA++A+ AA+++G QA Sbjct: 397 HEILPFKFTKAQERVINDILNDLQKSTAMNRLVQGDVGSGKTVVAVVAILAAIQSGYQAA 456 Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +MAP +LA+QHY + + + VE++TG+ + RR+ ++ G+ +++GTHAL Sbjct: 457 LMAPTEVLAEQHYRKLVTWFNLLHLPVELLTGSTKTSKRREIHSQLETGELPLLVGTHAL 516 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445 QD +++++L LV++DEQHRFGV+QR KL QK PHVL MTATPIPRTL LT GD+D+ Sbjct: 517 IQDKVKFHRLGLVVIDEQHRFGVEQRAKLQQKGEQPHVLTMTATPIPRTLALTVHGDLDV 576 Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 S+I E P GR+ IKT ++ ++ + + ++ +++G++ Y + P +EE ++ + RS ++ Sbjct: 577 SQIDELPPGRQQIKTSLLTGHQRPQAYDLIRREIAQGRQVYVVLPLVEESEKLDLRSAID 636 Query: 506 RFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + L E + + ++HG+M+ +KE ++ F++ ++L++TTV+EVG+DV +A+++ Sbjct: 637 EYQKLQETVFPNFQVGLLHGKMTSTEKEEAINKFRDNQTQILVSTTVVEVGVDVPNATVM 696 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623 +IE+AE FGL+QLHQLRGRVGRG + S C+L+ + ++ RL VL+ ++DGF I+E Sbjct: 697 LIEHAERFGLSQLHQLRGRVGRGMDQSYCLLM-SSSRNPDAQQRLKVLEQSQDGFFISEM 755 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 D++ R GE++G +QSG+ +A + +L +AR+ A+ ++ D L Sbjct: 756 DMRFRGPGEVMGTRQSGVADLTLASLVEDEEVLLLARQAAEKVIDMDVSL 805 >gi|168188107|ref|ZP_02622742.1| ATP-dependent DNA helicase RecG [Clostridium botulinum C str. Eklund] gi|169294058|gb|EDS76191.1| ATP-dependent DNA helicase RecG [Clostridium botulinum C str. Eklund] Length = 673 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 245/665 (36%), Positives = 375/665 (56%), Gaps = 22/665 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 ++ + + +G+G K L++ N +DLL Y P + +Y IS+I+ E Sbjct: 3 VYDDVVSLKGIGPKTKELLNQ------CNIYNILDLLLYFPRDYDKAYYCEDISKITNED 56 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 V I + +R + I + + +KN F ++ + G+ Sbjct: 57 KVLIKAKVKNIKKDAYVRRNMIISTVEFIKNNIVFKGKWFNQKYIKNKFIVNKEYFIFGR 116 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188 ++ KN I +P I N + +F + YSL ++ F+ I L + +L E Sbjct: 117 VQLEKNNITFTNPT-IVDNPE--SFLNLIPKYSLKGSITNKFFQNTIKHILENIDIL-EN 172 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248 + +L K S S+ EA IHNP K E A+ RL + EL + LL++ KQ+K Sbjct: 173 LPSTILNKYSLISLDEAIRNIHNPTGVKSLE---EAKNRLKFQELFTYSLKLLML-KQYK 228 Query: 249 KEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 K G+ + ++ KIL++ IPF+ T SQ I++IL D + M R++QGDVGSGKT Sbjct: 229 KSKGVGFKISDEL--KILKDSIPFNLTNSQNKVIREILIDEKRDIPMNRLVQGDVGSGKT 286 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +VALI++ V+ G Q +MAP ILA QHY + ++ I +E++TG H+ + Sbjct: 287 IVALISIFNVVKNGYQGCLMAPTEILANQHYTQALELFKDFNIAIELLTG--STKHKDEV 344 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 R+ G +IIGTHAL +D +++ KL +V+ DEQHRFGV+QR KL K VL+MT Sbjct: 345 KNRLKSGSIDLIIGTHALLEDDVEFSKLGMVVTDEQHRFGVKQRSKLYNKNNNIDVLVMT 404 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL L+ GD+DIS I E P GRK + T + + + + G + Y Sbjct: 405 ATPIPRTLALSIYGDLDISSIDELPPGRKKVDTYSVNDRARNRIYNFALKEIYNGAQVYI 464 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545 +CP +EE ++ N +SV + + L E + I AI+HG+MS +K+ +M+ FKNG K+L Sbjct: 465 VCPLVEENEDLNIKSVEKLYIELKEKYFKDIEIAILHGKMSSKEKDDIMNKFKNGKTKVL 524 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 I+TTVIEVG++V +A+++IIENAE FG++QLHQLRGRVGRG++ S CIL+ + S+ + Sbjct: 525 ISTTVIEVGVNVPNATLMIIENAERFGISQLHQLRGRVGRGDKKSYCILITNSS-SEITK 583 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665 R++V+ + DGF IAEEDLK R GEI G Q G F+I+ +L+IA K+A++ Sbjct: 584 QRMNVITKSNDGFFIAEEDLKLRGSGEIFGFNQHGEDGFIISNIVDDYKILKIANKEARN 643 Query: 666 ILTQD 670 ++ + Sbjct: 644 LINSN 648 >gi|313887889|ref|ZP_07821568.1| ATP-dependent DNA helicase RecG [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846055|gb|EFR33437.1| ATP-dependent DNA helicase RecG [Peptoniphilus harei ACS-146-V-Sch2b] Length = 676 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 242/673 (35%), Positives = 386/673 (57%), Gaps = 27/673 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L P+ +G+G K + K+ DLL ++P + D K++ +SE + Sbjct: 3 LSDPIKNLKGIGPKRAELFHKL------GIYTIEDLLHFYPRRYEDS---SKVTRVSEAK 53 Query: 69 IVTITGYISQHSSFQLQKRRPYK------ILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122 I + + S +LQ RR K L D +GE+ L FF L N GR Sbjct: 54 IGEKNTFRVRILS-KLQNRRIRKGLTLTSFLAEDESGEVELSFF--NAFYLHNKILPGRC 110 Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182 V GK + R+ M P I I +Y+L GL+ +F+K++ + + Sbjct: 111 YLVYGKADYFRGRVTMSSPE-IEEVDNLKKLGKISPIYNLTEGLNNFVFEKVVEQVIGE- 168 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 + E + K++L+K SF +A IH P+ K++ ARERL Y+EL ++++L Sbjct: 169 NLFRENLPKEILEKYSFLGKNDAIRAIHYPKSRKNY---IQARERLIYEELFLFELSILK 225 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 + Q ++ I ++ ++ + +PF T+ Q++ IK+I DM + + R++QGDV Sbjct: 226 NKVQNERRDAIKFEIKDQVFD-FINKLPFKLTEGQDTVIKEIFSDMKEGKAINRLIQGDV 284 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKT++A+I M A G Q+ IMAP ILA+QH+E + + I V ++ G+ + Sbjct: 285 GSGKTIIAIIIMYLAYLNGYQSSIMAPTEILAKQHFESFVELLEPLGIKVGLLIGSTSKK 344 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 +R L+ + G I+IGTHAL ++++ + KL + ++DEQHRFGV QR L K Sbjct: 345 AKRDILDNLEMGSIDILIGTHALIEENVVFKKLGVNVIDEQHRFGVVQRNMLQNKNKDAA 404 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 L+M+ATPIPR+L L D+D+S I P GRKPIKT+ I N +++ + +K L+EG Sbjct: 405 TLVMSATPIPRSLSLVLYADLDVSIIKSMPKGRKPIKTIAINENMLEKSLAFIKKELAEG 464 Query: 483 KKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540 ++AY IC IEE ++ N ++V + + L ++F+ ++ ++HG+M +K VM+ F Sbjct: 465 RQAYVICSLIEENQDYENLQAVEKVYEELSQYFSDFNLGLLHGKMKAEEKNQVMNDFAEN 524 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 LL++TTV+EVG++V +AS+I+I NAE FGL+ LHQLRGRVGRG++ S CI LY+ Sbjct: 525 KINLLVSTTVVEVGVNVPNASVIMIYNAERFGLSTLHQLRGRVGRGDQQSYCI-LYNLSK 583 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S+ S+ R+ ++ ++ DGF IA +DL+ R G+ILG +QSGMP +A P +++L+ A Sbjct: 584 SEISWERMKIMTDSNDGFYIANKDLELRGFGDILGTRQSGMPNLRLADPFRDETILKYAA 643 Query: 661 KDAKHILTQDPDL 673 +D K IL +DP+L Sbjct: 644 EDVKKILGEDPNL 656 >gi|28378326|ref|NP_785218.1| ATP-dependent DNA helicase RecG [Lactobacillus plantarum WCFS1] gi|254556534|ref|YP_003062951.1| ATP-dependent DNA helicase RecG [Lactobacillus plantarum JDM1] gi|28271161|emb|CAD64066.1| ATP-dependent DNA helicase RecG [Lactobacillus plantarum WCFS1] gi|254045461|gb|ACT62254.1| ATP-dependent DNA helicase RecG [Lactobacillus plantarum JDM1] Length = 679 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 233/671 (34%), Positives = 387/671 (57%), Gaps = 30/671 (4%) Query: 13 LSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 ++T GVG L+++ IN DLL Y+P + D + ++EI+++ VT Sbjct: 9 VATLSGVGPARQKGLAELGINT-------IADLLTYYPFRYEDLQVK-DVNEIADQEKVT 60 Query: 72 ITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 + G ++ + F +K R +++L++ ++ ++ F+ + ++K + G+ + V G Sbjct: 61 LKGTVASEPVLARFGRKKNRLNFRLLIDH---DVYMVTFFNQPYLMKQIE-TGQDLAVYG 116 Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS-RLPVLP 186 K ++ + + I N+ D F ++Y + +K+I +A PV+ Sbjct: 117 KWDATRSSLTGMK--IINPNNADSAFG---SIYPASKTVKQGTIQKMIKQAYELYAPVIT 171 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 + + +L K + + +H P D ++ AR Y+E L Q+ + ++++ Sbjct: 172 DIVPANLRAKYRLLPRRQMIHDMHFPASQAD---STAARRSATYEEFLLFQMQMQVLKQT 228 Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 GI I + + ++ +PF T +Q+ + +I D+ M R+LQGDVGSGK Sbjct: 229 DATTNGIAIAYDNDRLKAFIKTLPFELTHAQKRVVNEICLDLKSPKHMNRLLQGDVGSGK 288 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366 T+VA I M AA+ AG QA +MAP ILA+QH + + +T + V ++TG A R+ Sbjct: 289 TIVAAIVMYAAITAGYQAALMAPTEILAEQHANNLAQVFADTDVNVALLTGATKPAARKT 348 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426 L +A G+ +++IGTHAL QD + Y L LVI DEQHRFGV QR QK P L M Sbjct: 349 LLAALAAGEINLLIGTHALIQDGVTYANLGLVITDEQHRFGVNQRAAFRQKGGQPDALAM 408 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486 TATPIPRTL +T+ G++D+S+I E PAGR+PI+T + N+ + + + + G +AY Sbjct: 409 TATPIPRTLAITAYGEMDVSEIDELPAGRQPIQTTWVRSNQANSALSFVHQQIDNGSQAY 468 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKL 544 + P IEE + + ++ +L E+F +S + ++HGRM +K++VM +FK G +L Sbjct: 469 VVTPLIEESETLDVKNAEALSANLQEYFGASVKVGLLHGRMKPEEKDAVMAAFKAGDIQL 528 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 L++TTVIEVG+DV +A+I++I +A+ FGLAQLHQLRGRVGRG + S CIL+ P ++ Sbjct: 529 LVSTTVIEVGVDVKNATIMMIYDADRFGLAQLHQLRGRVGRGTKASYCILVADPK-NQQG 587 Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 R+ ++ T +GF++A++DL+ R G++LG+KQSGMP+F + P ++L++A++DA Sbjct: 588 IERMQIMTQTTNGFVLAQKDLELRGAGDVLGVKQSGMPEFKVGDPIADLTVLQVAQQDA- 646 Query: 665 HILTQDPDLTS 675 H + Q PD S Sbjct: 647 HAIVQQPDWQS 657 >gi|285017596|ref|YP_003375307.1| ATP-dependent DNA helicase [Xanthomonas albilineans GPE PC73] gi|283472814|emb|CBA15319.1| probable atp-dependent dna helicase protein [Xanthomonas albilineans] Length = 715 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 239/692 (34%), Positives = 379/692 (54%), Gaps = 38/692 (5%) Query: 11 APLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69 APL+T GVG K + F ++ ++ DL + P + DR ++ + Sbjct: 17 APLTTLPGVGPKLAEKFAARGLST-------LQDLWLHLPLRYEDRTRLTAVAALQPGVP 69 Query: 70 VTITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFF-YRKTEMLKNVFFEGRKITVTG 127 + ++ Q + R ++ + D + G + L FF +R + + F G ++ G Sbjct: 70 AQVDVWV-QAVDRGFRYRPMLRVAVADASHGTLVLRFFQFRAAQAAQ--FVVGARLRAFG 126 Query: 128 KIKKLKNRIIMVHPHYIF-HNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLP-- 183 K ++ + VHP Y F ++V ++ VY + G+ +++I +AL RLP Sbjct: 127 TPKPGQHGLEFVHPSYQFLGEGEEVALGDRLDPVYPVVEGVGPATLRRLIGQALDRLPED 186 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNP----RKAKDFEWTSPARERLAYDELLAGQIA 239 E + LL + PS+ A + H P A PA++RL +ELLA ++ Sbjct: 187 ASLELLPPVLLAELGLPSLRHALLVAHRPPPQADLAALAAGLHPAQQRLVLEELLAHHLS 246 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L R +++ ++ G++ +++ +++PF T +Q I D+ + MLR++Q Sbjct: 247 LRRQRIALQRQPAPSLHSRGRLVKRLQQSLPFQLTGAQLRVFAQIRADLERPAPMLRLVQ 306 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT+VA +A AV+ G QA + AP +LA+QH ++ + + + V + G + Sbjct: 307 GDVGSGKTVVAAMAAMLAVDKGKQAALAAPTELLAEQHLTNLRTWLEPLGVRVAWLAGKV 366 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-- 417 R + L +IA G+A +++GTHAL Q ++ ++ L L IVDEQHRFGV QRL L K Sbjct: 367 TGKARSRVLAQIASGEAQVVVGTHALMQAAVTFHDLALAIVDEQHRFGVHQRLALRDKGA 426 Query: 418 --ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 A PH L+MTATPIPRTL + + D+D+S I E P GR P++T+++ R E+++R+ Sbjct: 427 SGAGVPHQLVMTATPIPRTLAMAAYADLDVSAIDELPPGRTPVQTIVLNAERRPELVQRI 486 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-------------IAIIH 522 +V +EG++AYW+C IE+ +++ + N L + + + H Sbjct: 487 RVACAEGRQAYWVCTLIEDAEDAETSAQAGAGNRLEASAAQATFETLSAQLPELRVGLAH 546 Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582 GRM +K++ M +FK G LL+ATT+IEVG+DV +AS++IIENAE GLAQLHQLRGR Sbjct: 547 GRMKSAEKQAAMRAFKQGEIDLLVATTIIEVGVDVPNASLMIIENAERLGLAQLHQLRGR 606 Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642 VGRG +SSC+L+Y PLS + RL ++ T DGF+IAE+DL+ R GE+LG +Q+G+ Sbjct: 607 VGRGAAVSSCVLMYQAPLSAMARQRLETMRQTNDGFVIAEKDLELRGPGELLGTRQTGLA 666 Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 F +A LL A +L P L Sbjct: 667 AFRVADLARDAGLLPRVHALADRLLDASPALA 698 >gi|260177190|gb|ACX33914.1| putative ATP-dependent DNA helicase RecG [uncultured prokaryote AT3] Length = 695 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 230/605 (38%), Positives = 342/605 (56%), Gaps = 24/605 (3%) Query: 83 QLQKRRPYKILLNDGTGEITLLF--FY-RKTEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139 Q + RR + +D +G + L F FY +T+ + R++ + G+++ MV Sbjct: 79 QFRPRRQLVVRCHDDSGPLVLRFINFYGSQTKQFEGARDLNRRLRLFGEVRAGFFGDEMV 138 Query: 140 HPHYIFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRL---PVLPEWIEKDLLQ 195 HP P + VY GLS +KII ++L+++ P LP +L Sbjct: 139 HPRVRLVAENHAELPDRLTPVYPTTAGLSQAALRKIIGKSLAQVDLSPTLPADSAPEL-- 196 Query: 196 KKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251 P++ +A +H P D E T P RL ++EL+A Q++L ++ Sbjct: 197 ----PAVDQAVRYLHAPPPDADVTTLQEHTHPCWRRLKFEELVAQQLSLKRAYLARRERG 252 Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 P+ G+I +L ++PF T +Q+ +++ D+ + M R+LQGDVGSGKT+VA Sbjct: 253 APPLLPTGEITNALLASLPFQLTAAQQRVWQELRTDLVTPHPMQRLLQGDVGSGKTVVAA 312 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 +A A+EAG QA MAP ILA+QHY+ + + I V + G++ A ++ Sbjct: 313 LAACQAIEAGYQAAFMAPTEILAEQHYQKLAGWLTPLGISVLWLAGSLKAAEKKLRQAEA 372 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----TAPHVLLMT 427 AH Q +I+GTHAL QD++ + +L + IVDEQHRFGV QRL L +K +APH L+M+ Sbjct: 373 AHAQ--LIVGTHALIQDAVDFSRLGIAIVDEQHRFGVAQRLALRKKGAHAGSAPHQLMMS 430 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T D+D+S + E P GR PI+T ++ R EVIER++ +EG++ YW Sbjct: 431 ATPIPRTLAMTYFADLDVSVLDELPPGRTPIRTKLVSDARRGEVIERIRTACAEGRQVYW 490 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 +CP IEE + + + ++ L E ++ ++HGR+ +K M F G ++L+ Sbjct: 491 VCPLIEESEAIDLQPAIDTHALLTEALPEFAVGLVHGRLKADEKAWAMAEFNAGRTQVLV 550 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 ATTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG S CIL+Y PLS+ + Sbjct: 551 ATTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGTADSVCILIYAAPLSQTARE 610 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666 RL ++ DGF IA DL R GE +G +QSG P A E L E AR A+ + Sbjct: 611 RLKIIYENTDGFEIARADLHLRGPGEFIGHRQSGAPLLRYADLETDVDLAERARDLAERL 670 Query: 667 LTQDP 671 L DP Sbjct: 671 LRADP 675 >gi|319637789|ref|ZP_07992555.1| ATP-dependent DNA helicase RecG [Neisseria mucosa C102] gi|317400944|gb|EFV81599.1| ATP-dependent DNA helicase RecG [Neisseria mucosa C102] Length = 729 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 230/600 (38%), Positives = 344/600 (57%), Gaps = 7/600 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H + R+ + + DG+G + L F + G++I G+IK + M Sbjct: 114 HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASNQKQMAVGKRIRAVGEIKHGFHGDEM 173 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP S + L +Y GL+ ++II AL P L + + LL + Sbjct: 174 IHPKIRDAESSGLAESLT-PIYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLGRLK 231 Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 P +AE+ ++H+P + + T PA +RL +DELLA Q+++ L R++ Sbjct: 232 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGTATS 291 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + +G + Q + +PF+ T +QE + +IL DM+Q + M R+LQGDVGSGKT+VA ++ Sbjct: 292 LGGDGTLTQALRHALPFALTDAQEKVVSEILHDMAQTHPMHRLLQGDVGSGKTIVAALSA 351 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A+E+G Q +MAP ILA+QH+ K++ + + V ++G+ + + +A ++A G Sbjct: 352 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADG 411 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 I +GTHALF D +++ L LVIVDEQHRFGV QRL L K H L+M+ATPIPRT Sbjct: 412 TVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLALKNKGRDVHQLMMSATPIPRT 471 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I E P GR PIKT ++ R EV + + +G++AYW+CP IEE Sbjct: 472 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIEE 531 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ E L +I ++HGRM +K VM F G +L+ATTVIEV Sbjct: 532 SETLQLQTATETLAQLQAALPELNIGLVHGRMKAAEKAEVMAQFAVGRLNVLVATTVIEV 591 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +A++++IE+AE GLAQLHQLRGRVGRG S C+LL+ PLS+ + RL V+ Sbjct: 592 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYE 651 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA +DL R GE LG +QSG+P A E LLE AR+ A ++ Q+P++ Sbjct: 652 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEEDLHLLEQAREIAPLLIEQNPEI 711 >gi|148263926|ref|YP_001230632.1| ATP-dependent DNA helicase RecG [Geobacter uraniireducens Rf4] gi|146397426|gb|ABQ26059.1| ATP-dependent DNA helicase RecG [Geobacter uraniireducens Rf4] Length = 829 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 243/692 (35%), Positives = 377/692 (54%), Gaps = 24/692 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE-E 67 L P+ +GVG K + L+K + D LF P + DR KI + Sbjct: 127 LETPMQFIKGVGPKLAENLAK------KGVSVVEDALFLLPHRYEDRRTLAKIGRLRPGA 180 Query: 68 RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 V I+ ++ +R +++ + DG+G +TL +F+ +K ++ GRK TG Sbjct: 181 NEVFFAEVIAADAASTRGGKRFFEVTVGDGSGTVTLKWFHFNPAFMKKIWKPGRKGIFTG 240 Query: 128 KIKKLKNRIIMVHPHYIF----------HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177 ++ + + + HP + ++F I VY L GLS +K++ E Sbjct: 241 EVVQYGFQREVHHPEVEWLPEGEDLAAVMAGDPLSFGRILPVYPLTEGLSQKTLRKVMKE 300 Query: 178 ALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDE 232 A+ R + + +++ + + +A H P D + + A LA+DE Sbjct: 301 AVDRFVADVENHLPLEVIGRHDLMPLDKALQAAHFPANDADLQTLNNGATAAHRTLAFDE 360 Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292 ++ L L + E GI V K +++L+ +PFS T +Q + +I DM + Sbjct: 361 FFFLELGLALKKNGIALEEGIDFQVTHKYTKELLKLLPFSLTNAQRRVLSEIKNDMMAPH 420 Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352 M R++QGDVG GKTLVAL+A AVE Q IMAP ILA+QH+ I + + V Sbjct: 421 PMHRLVQGDVGCGKTLVALMAALVAVENDYQVAIMAPTEILAEQHFLNIHHWCDALGVKV 480 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 ++T ++ ++ ALE IA G A ++IGTHA+ QD +++ +L L I+DEQHRFGV QR Sbjct: 481 ALLTSSLKGKAKKAALEEIATGNAQVVIGTHAVIQDKVEFRRLGLGIIDEQHRFGVLQRG 540 Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 L +K P +L+MTATPIPRTL +T GD+ +S I E P GR P++T I +R +V Sbjct: 541 ILKKKGQNPDILVMTATPIPRTLAMTVFGDLSLSVIDELPPGRTPVETRIAFESRRSQVY 600 Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDK 530 ++ + +G++AY I P +EE ++S+ ++ + L + ++HGRM +K Sbjct: 601 GVIREEVKKGRQAYVIYPLVEESEKSDLKAAAQMAEQLQSDVFPDLRVGLLHGRMRPDEK 660 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 E+VM +FK +L+ATTVIEVGIDV +A++++IE+AE FGL+QLHQLRGRVGRG + S Sbjct: 661 EAVMAAFKARETDILVATTVIEVGIDVPNATVMVIEHAERFGLSQLHQLRGRVGRGSDKS 720 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 CILL LS++ RL V+++T DGF IAE DL+ R G+ LG +Q+G+P F +A Sbjct: 721 RCILLTTGRLSEDGEKRLRVMESTSDGFRIAEADLEIRGPGDFLGTRQAGLPDFRVANIL 780 Query: 651 LHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682 +LE AR +A + +D L + +R Sbjct: 781 RDGRILEEARMEAFSFVEKDRGLVAPENAGLR 812 >gi|123968352|ref|YP_001009210.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str. AS9601] gi|123198462|gb|ABM70103.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str. AS9601] Length = 815 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 241/649 (37%), Positives = 369/649 (56%), Gaps = 23/649 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ---HSSFQLQKRRPYKILLNDGTG 99 DL+ Y P +++D R KI + + + T + + H S + I++ D T Sbjct: 148 DLINYFPRTYLDYTNRVKIINLKPDNLYTCIANVKRFYIHKSKKNSNLSIMNIVVFDETS 207 Query: 100 EITLLFFYRKTEMLKNVFFE--------GRKITVTGKIKKLKNRIIMVHPHY--IFHNSQ 149 I + F+ FF G K+ ++GK+K + V P + N+ Sbjct: 208 SIKVTKFFLGKRFRSYSFFTSQKSLYTPGTKLAISGKVKLTEYGKTFVDPQIEILKDNND 267 Query: 150 DVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI 208 + NF I +YSL LS F K++ + L PE + K L S S E+ Sbjct: 268 NFNFSGKILPLYSLGEALSNMSFIKLMKKVLIYAKQYPEILNKKQLDSLSLLSKGESLIN 327 Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK--IAQKIL 266 IH P + +++RL +DEL QI LL +++ KK + P + K + ++ L Sbjct: 328 IHFPPTQ---QALIESKKRLVFDELFLLQIKFLLRKRKTKKNVN-PQQLPQKKSLLKEFL 383 Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 PF TKSQE+ + +I +D+S M R+LQGDVGSGKT++A+ ++ +E Q I Sbjct: 384 DTFPFELTKSQENVLNEIKKDLSNPVPMSRLLQGDVGSGKTIIAIASLLLVIEKNLQGAI 443 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 M P +LA+QHY+ + KY + VE++TGN PQ R++ + +G I++GTHALF Sbjct: 444 MVPTEVLAEQHYKNLLKYLNPLFVSVELLTGNTPQKKRKEIFSNLNNGLVDILVGTHALF 503 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 +D + + L +V++DEQHRFGV QR +L K ++L MTATPIPRTL L+ GD+D+S Sbjct: 504 EDKVIFNALGMVVIDEQHRFGVTQRNRLLNKGENTNLLSMTATPIPRTLALSIYGDLDVS 563 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 +ITE P GR PI T II + + + + ++ +++GK+AY I P IE+ ++ N S + Sbjct: 564 QITELPPGRVPITTKIISEDDLTNLFKIVEDEINKGKQAYVILPLIEDSEKMNLSSAKKT 623 Query: 507 FNSLHEH--FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 F L E F + ++HG++S +K V++SF +L++TTVIEVGIDV +A+I+I Sbjct: 624 FKHLSEEVFFNKKVGLLHGKLSSQEKNEVINSFLKNEINILVSTTVIEVGIDVPNATIMI 683 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624 I N++ FGL+QLHQLRGRVGRG S C L+ P + RL VL+ + DGF IAE+D Sbjct: 684 IYNSDRFGLSQLHQLRGRVGRGSTKSFCYLV-TPDKNGLENKRLCVLQKSNDGFYIAEKD 742 Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 L+ R G+ILG +QSG+P F++ + L++ AR++A I++ DPDL Sbjct: 743 LELRGPGQILGYRQSGLPDFVLDNLPNNKFLIDKAREEAIKIVSDDPDL 791 >gi|294506159|ref|YP_003570217.1| ATP-dependent DNA helicase RecG [Salinibacter ruber M8] gi|294342487|emb|CBH23265.1| ATP-dependent DNA helicase RecG [Salinibacter ruber M8] Length = 700 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 233/681 (34%), Positives = 378/681 (55%), Gaps = 38/681 (5%) Query: 43 DLLFYHPSSFIDRHYRPKISEISE-ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101 DLL ++P ++DR + + E VT+ G + + ++ +I+L G Sbjct: 35 DLLRFYPRRYLDRTTVTPVRRLQEGPDSVTVVGTVRSVNVVPGNNQKRLEIILEGEQGGR 94 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161 +++ ++ F EG ++ G ++K M HP + N + PL++ Sbjct: 95 MKGTWFQGVWWVRKAFDEGDRVAFHGTVEKYGRWHSMTHPDFDRLNDEG---PLLDTGRI 151 Query: 162 LP----------TGLSVDLFKKIIVE-----ALSRLPVLPEWIEK--DLLQKKSFPSIAE 204 +P GL+ ++++ + L +P+WI DL++ + Sbjct: 152 VPLYPGGEAMSNVGLTSRTVRRVLYDLFKEHGLKLTETMPDWIMDGYDLMEGRV------ 205 Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK 264 A IH P+ ++ S A+ RL ++EL Q+ L M +Q ++ G + G ++ Sbjct: 206 ALRAIHFPKTQQEL---SRAQRRLKFEELFFIQLLLAQMHEQQEEVAGPAFDDPGAYTRE 262 Query: 265 ILRNI-PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 +R + PF T +Q A+++I+ D+ +M R+LQGDVGSGKT+VA+ AM A ++G Q Sbjct: 263 FVREVLPFELTGAQTRALREIIGDVQTGTQMNRLLQGDVGSGKTVVAVAAMMHAYDSGYQ 322 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 + MAP ILA+QH+ ++ Y Q + ++ G+ +A R AL+ + G++ + +GTH Sbjct: 323 SAFMAPTEILAEQHHANLQDYLQPLGLEPRLLIGSQTKAEREAALQAVRSGESPVAVGTH 382 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443 AL QD + + +L L +VDEQHRFGV QR ++ +K PH+LLMTATPIPR+L LT GD+ Sbjct: 383 ALIQDEVAFDRLGLAVVDEQHRFGVAQRAEMFEKGERPHMLLMTATPIPRSLALTLYGDL 442 Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503 D+SKI E P GRKP++T + R EV L L +G++A+ + P +EE ++ + + Sbjct: 443 DVSKIDEMPPGRKPVETRLRAEKRRGEVYAFLNDRLEQGEQAFVVYPLVEESEKMDLKDA 502 Query: 504 VERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 L E F ++ ++HG++S DK++ M FK G LL+ATTVIEVG+DV +A++ Sbjct: 503 ESGAQELQEKFPDYTVGLVHGQLSADDKDATMRRFKKGDIDLLVATTVIEVGVDVPNATV 562 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622 +++E+AE FGL+QLHQLRGRVGR ++ S C+L+ S+ + RL + T DGF I+E Sbjct: 563 MLVEHAERFGLSQLHQLRGRVGRSDQQSYCVLMASYKRSQEAKQRLEAMARTNDGFEISE 622 Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682 DL+ R G+ G +QSGMP IA D +LE+AR+ A ++ +DP L + + +R Sbjct: 623 TDLQIRGAGDFFGTRQSGMPDLKIADLTEDDEILEVAREAAFALIEKDPHLRADEHERLR 682 Query: 683 ILLYLYQYNEA---FQFIRAG 700 + YQ + A F R G Sbjct: 683 ---HRYQEDYAEHGLGFARVG 700 >gi|307297520|ref|ZP_07577326.1| ATP-dependent DNA helicase RecG [Thermotogales bacterium mesG1.Ag.4.2] gi|306916780|gb|EFN47162.1| ATP-dependent DNA helicase RecG [Thermotogales bacterium mesG1.Ag.4.2] Length = 785 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 229/648 (35%), Positives = 365/648 (56%), Gaps = 37/648 (5%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99 DL+ Y P + DR IS I +R V++ G + +F +K Y I+ ++DG G Sbjct: 134 DLIQYFPRDYEDRRIIMPISSIVPDRKVSVKGRLL---NFSAKKASGYTIISAVVSDGFG 190 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA- 158 ++ L +F + + K+++ + +I ++N P IE Sbjct: 191 QLLLKWFNQDY--------------IIQKLRRDREYLIHGLAKETPFGPMEMNSPEIEEI 236 Query: 159 ----------VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI 208 VYSL +G+S+ + +KI+ L + L + + + ++ AF Sbjct: 237 QGEVPREILPVYSLTSGISMKMMRKIVKRNLGLVRSLDDLVPSSITTERGLLPRKHAFTA 296 Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILR 267 IH P K ARE LAY+E + +L ++Q +KE G+ + G ++++++ Sbjct: 297 IHFP---KSLYEIRKARESLAYEEFFLFETTILFRKRQIRKEYQGLQKEISGVLSKRLIE 353 Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 ++PF TK Q +A ++I DM + M R+LQGDVGSGKTLVA +AM EAG Q+ +M Sbjct: 354 SLPFELTKDQVTAFEEIRDDMRAASPMNRLLQGDVGSGKTLVAELAMVDNYEAGYQSALM 413 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LA QHYE IK+ I ++TG++ + + R+ G+ +++GTHAL Q Sbjct: 414 VPTSVLAMQHYEKIKRELSPIGIETGLLTGSLKKNEQDFVRMRLKKGEIDVVVGTHALIQ 473 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D +++ L LV+VDEQHRFGV+QR LT K L+MTATPIPRTL LT GD+DIS Sbjct: 474 DGVEFKNLGLVVVDEQHRFGVKQRETLTTKGKLLDSLVMTATPIPRTLALTVYGDLDIST 533 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 I P GR P++T+I+ R+ ++ + L G +A++I P IEE ++ + ++ + Sbjct: 534 ILTLPKGRSPVRTIILARKRLKDLYSYISDELKMGHQAFFIYPLIEESEQVDLKNATDEA 593 Query: 508 NSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 L E + + +HGR++D +K+ +M F++ +L++TTV+EVGID+ A++++I Sbjct: 594 TKLREEVFPGVGVELLHGRLNDNEKQEIMQRFRSRQSMILVSTTVVEVGIDIPTATVMVI 653 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625 E+ E FG+AQLHQLRGRVGR S C+++ + +S ++ +RL +T GF +AE DL Sbjct: 654 EHPERFGMAQLHQLRGRVGRSNLKSICVMVMNKAISDDALSRLREFASTSSGFDVAELDL 713 Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 + R GE LG++Q GMP+FLI LL AR+DAK ++ +DP+L Sbjct: 714 RLRGPGEFLGLRQHGMPQFLIGDIVNDRDLLFKAREDAKQLMEEDPEL 761 >gi|300867528|ref|ZP_07112179.1| ATP-dependent DNA helicase recG [Oscillatoria sp. PCC 6506] gi|300334522|emb|CBN57349.1| ATP-dependent DNA helicase recG [Oscillatoria sp. PCC 6506] Length = 832 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 235/677 (34%), Positives = 379/677 (55%), Gaps = 31/677 (4%) Query: 27 LSKIINCGNANETRF--------IDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78 L+++ G N R DLL+Y+P ID + I E++ VT+ + + Sbjct: 139 LNRVTGIGPNNGNRLGKLGLLTVYDLLYYYPRDHIDYARQVSIRELAAGETVTLVATVKR 198 Query: 79 HSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKT--------EMLKNVFFEGRKITVTG 127 + F K IL L D TG+I L F+ E K + G + +G Sbjct: 199 CNCFSSPKNNKLTILELILTDRTGQIKLNRFFHGNRYSNRGWQEQQKRYYPVGAVVAASG 258 Query: 128 KIKKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182 +K+ K + + +P +S + + VY L G+ + ++ + AL + Sbjct: 259 LVKQGKYGVTLENPEIEVLDSDGGTIESATVGRLVPVYPLTDGVDAGVVRRGMAAALPAV 318 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 + E + + L + S IA+A + IH P D + S +R RL +DE Q+ LL Sbjct: 319 KQVQESLPESLRDRYSLMGIADALSNIHFP---LDRDCLSASRRRLVFDEFFYLQLGLLK 375 Query: 243 MRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 R+ +K + + G++ IPF T +Q+ I +IL D++ M R++QGD Sbjct: 376 RRQMHRKAQASAVLIPNGELLNNFYNIIPFKLTNAQQRVINEILNDLASPEPMNRLVQGD 435 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VG+GKT+VA++A+ AA+++G QA +MAP +LA+QHY + + + VE++TG+ Sbjct: 436 VGAGKTVVAVVAILAAIQSGYQAALMAPTEVLAEQHYRKLVGWLNLMHLPVELLTGSTKV 495 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 A RR+ ++ GQ +++GTHAL QD++ + KL LV++DEQHRFGVQQR KL QK +P Sbjct: 496 AKRREIHSQLETGQLKVLVGTHALIQDTVNFDKLGLVVIDEQHRFGVQQRAKLQQKGESP 555 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 HVL MTATPIPRTL LT GD+D+S I E P GR+ I+T I+ + E ++ + Sbjct: 556 HVLTMTATPIPRTLALTLHGDLDVSLIDELPPGRQAIQTTILTGKERSQAYELIRREVGG 615 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKN 539 G++ Y + P +EE ++ + RS +E L + ++HGRM+ +K+ + F++ Sbjct: 616 GRQVYVVLPLVEESEKLDLRSAIEEQEKLKTTIFPEFKVGLLHGRMTSAEKDEAITKFRD 675 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 +L++TTV+EVG+DV +A++++IEN E FGL+QLHQLRGRVGRG + S C+L+ Sbjct: 676 RETHILVSTTVVEVGVDVPNATVMLIENCERFGLSQLHQLRGRVGRGSDRSYCLLMRGSN 735 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 + + R+ VL+ ++DGF IAE D++ R G++LG +Q+G+P F +A +LE+A Sbjct: 736 -AGEALQRMKVLEQSQDGFFIAEMDMRLRGPGQVLGTRQAGLPDFALASLVEDQEVLELA 794 Query: 660 RKDAKHILTQDPDLTSV 676 R+ AK ++ +D L + Sbjct: 795 REAAKRVIDEDERLNQM 811 >gi|255066129|ref|ZP_05317984.1| ATP-dependent DNA helicase RecG [Neisseria sicca ATCC 29256] gi|255049674|gb|EET45138.1| ATP-dependent DNA helicase RecG [Neisseria sicca ATCC 29256] Length = 704 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 231/600 (38%), Positives = 342/600 (57%), Gaps = 7/600 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H + R+ + + DG+G + L F + G++I G+IK M Sbjct: 89 HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQMAAGKRIRAVGEIKHGFYGDEM 148 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP + L VY GL+ ++II AL P L + + LL + Sbjct: 149 IHPKIRDAEGSGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLGRLK 206 Query: 199 FPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 P +AE+ ++H+P + S PA +RL +DELLA Q+++ L R++ Sbjct: 207 LPHLAESLRLLHSPPPSFTIHQLSDGALPAWQRLKFDELLAQQLSMRLARQKRVSGTAAA 266 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + +G + Q + +PF+ T +QE + +I +DM+Q + M R+LQGDVGSGKT+VA ++ Sbjct: 267 LGGDGTLTQALRHALPFALTDAQERVVSEIRRDMAQTHPMHRLLQGDVGSGKTIVAALSA 326 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A+E+G QA +MAP ILA+QH+ K++ + + V ++G+ + + +A ++A G Sbjct: 327 LTAIESGAQAAVMAPTEILAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADG 386 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 I +GTHALF D +++ L LVIVDEQHRFGV QRL L K H L+M+ATPIPRT Sbjct: 387 TVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLALKNKGRDVHQLMMSATPIPRT 446 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I E P GR PIKT ++ R EV + + +G++AYW+CP IEE Sbjct: 447 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIEE 506 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ E L +I ++HGRM +K VM F G +L+ATTVIEV Sbjct: 507 SETLQLQTATETLEQLQAALPELNIGLVHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEV 566 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +A++++IE+AE GLAQLHQLRGRVGRG S CILL+ PLS+ + RL V+ Sbjct: 567 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCILLFAEPLSELAKARLKVIYE 626 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA +DL R GE LG +QSG+P A E LLE AR+ A ++ Q+P++ Sbjct: 627 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEEDLHLLEQAREIAPMLIEQNPEI 686 >gi|119357864|ref|YP_912508.1| ATP-dependent DNA helicase RecG [Chlorobium phaeobacteroides DSM 266] gi|119355213|gb|ABL66084.1| ATP-dependent DNA helicase RecG [Chlorobium phaeobacteroides DSM 266] Length = 707 Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust. Identities = 254/727 (34%), Positives = 390/727 (53%), Gaps = 52/727 (7%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISE 63 + + + L +GVG + + LS+ I + G DL Y P ++DR +ISE Sbjct: 1 MTTMRSSLRALQGVGPRRADTLSEAGIHDVG--------DLYDYFPRRYLDRRAMRRISE 52 Query: 64 ISEERIVTITGYISQH-SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122 + VT+ G + + Q R +K+LL D TG + L++F R + G Sbjct: 53 LLNGETVTVVGRVLKTVQEGQGVARSRFKVLLADETGVLELVWF-RGVRYFSKMLATGDV 111 Query: 123 ITVTGKIKKLKNRIIMVHPHY-------------------IFHNSQDVNFPLIEAVYSLP 163 + V GK+ + M HP + ++H + I ++YS Sbjct: 112 LAVFGKVGYFGRQAQMQHPDFDKLGSGVQASGSGESSDLELYHTGR------IISLYSTS 165 Query: 164 -----TGLSVDLFKKIIVEALS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 GLS + I+++A P E + +++L + EA+ IH P Sbjct: 166 DAMKQAGLSSRQLRMILLKAFDDHPPGREENLSEEMLAAHGLMPLGEAYREIHFPATQ-- 223 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKS 276 E + AR RL + EL Q+ L R++ ++ + + G+I +K+ +PF T + Sbjct: 224 -ETLAAARYRLKWTELFYAQLLFALRRQEIRQNKTAARFDHSGEITRKLYEALPFDLTGA 282 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q++ I++I QD+ M R+LQGDVGSGKTLVA+ ++A A + G Q+ MAP ILA Q Sbjct: 283 QKTVIREIYQDLRSGCPMNRLLQGDVGSGKTLVAMFSIALAADNGLQSAFMAPTEILAVQ 342 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 HY +K+ Q + V +++G + R L + +G I +GTHA+ ++ + L Sbjct: 343 HYLALKRAFQPLGLNVGLLSGRQRKKERDAVLGDLRNGTIAIAVGTHAMIEEGVTMAALG 402 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 LVI+DEQHRFGV QR L +KA PHVLLMTATPIPRTL + GD+D+S I E P GR+ Sbjct: 403 LVIIDEQHRFGVLQRKALQEKALNPHVLLMTATPIPRTLCMGVFGDLDVSVINEMPPGRQ 462 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 P+ T ++ N E + + +G++AY + P +EE ++ + ++ V+RF+ L + S Sbjct: 463 PVVTKLLAGNETGEAYTSIIREVQKGRQAYIVYPMVEESEKIDLKAAVDRFDFLTANIFS 522 Query: 517 S--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + +IHGRM+ KESVMD F+NG +L+ TTVIEVG+DV +A+I++IE+AE FGLA Sbjct: 523 DLRLGLIHGRMTTESKESVMDEFRNGRIDVLVGTTVIEVGVDVPNATIMMIEHAERFGLA 582 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG S+C L Y + ++ RL +++ DGF I++ D + R G IL Sbjct: 583 QLHQLRGRVGRGSHPSTCFLCYEKT-APDALRRLHAMESVADGFRISKIDAEIRGTGNIL 641 Query: 635 GIKQSGMPKFL-IAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693 G +QSG L IA + +++L IAR +A ++ +D L IR YL Y+E Sbjct: 642 GKEQSGAASGLKIADLQHDEAILNIARTEAFALVAKDSQLRMPEHAMIRT-CYLRHYHER 700 Query: 694 FQFIRAG 700 + G Sbjct: 701 YALADIG 707 >gi|163788712|ref|ZP_02183157.1| ATP-dependent DNA helicase [Flavobacteriales bacterium ALC-1] gi|159875949|gb|EDP70008.1| ATP-dependent DNA helicase [Flavobacteriales bacterium ALC-1] Length = 700 Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust. Identities = 249/679 (36%), Positives = 379/679 (55%), Gaps = 23/679 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L P+ +GVG + L ++ + DL+ P+ +IDR KI+E+ Sbjct: 5 LQTPIDYLKGVGPNRADLLRSELDIHT-----YQDLINLFPNRYIDRTKYYKINELQRNN 59 Query: 69 I-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 V + G I+ ++ + D TG + L++F R + ++ G+ + G Sbjct: 60 AEVQVIGVITGFREVAQKRGKRLVADFKDDTGSMELVWF-RGQKWIRESLKTGKPYVIFG 118 Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLS-VDLFKKIIVEALSRLPV- 184 K ++ M HP D N ++A+Y LS + ++I + + +L + Sbjct: 119 KTNWFSSKYSMPHPEIELQTEHDNNLRSAMQAIYPSTEKLSNKGITNRVITKIMQQLFLD 178 Query: 185 ----LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 E + ++++ S ++A IH P+ E S A+ RL ++EL Q+ L Sbjct: 179 TKGKFVETLSDLVMRELKLISKSDALFNIHFPKTP---ELLSKAQFRLKFEELFYIQLQL 235 Query: 241 LLMRKQFKKEI-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 +L K +I G P G + +PF T +Q+ +K+I QD+ +M R+L Sbjct: 236 ILKNLIHKSKIKGFPFEKVGDYFNTFYNSHLPFELTNAQKRVLKEIRQDLGSNAQMNRLL 295 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKT+VA ++M ++ G Q +MAP IL+ QHY +K+ I + ++TG+ Sbjct: 296 QGDVGSGKTIVAFMSMLVGLDNGFQCCLMAPTEILSVQHYNGLKELCNKLNIRISLLTGS 355 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + RRK E + +G I+IGTHAL +D +++ L L I+DEQHRFGVQQR KL K Sbjct: 356 SKTSERRKIHENLENGNLQILIGTHALLEDKVKFKNLGLAIIDEQHRFGVQQRSKLWHKN 415 Query: 419 TAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 T+P HVL+MTATPIPRTL ++ GD+DIS I E PAGRKPIKTV N +V + +K Sbjct: 416 TSPPHVLVMTATPIPRTLAMSVYGDLDISVIDELPAGRKPIKTVHRFDNNRLKVFKFIKD 475 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVM 534 +++G++ Y + P I+E ++ +++ +++ + S+ F I+I+HG+M DK+ M Sbjct: 476 EIAKGRQIYVVYPLIQESEKMDYKDLMDGYESISREFPMPKYQISIVHGKMKPDDKDYEM 535 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F G +++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRVGRG E S CIL Sbjct: 536 QRFVRGETNIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVGRGAEQSFCIL 595 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 + LS+NS TRL + + DGF IAE DLK R G+I+G +QSG+ IA Sbjct: 596 MTSHKLSQNSKTRLETMVRSSDGFEIAEVDLKLRGPGDIMGTQQSGVLNLRIADIVKDKD 655 Query: 655 LLEIARKDAKHILTQDPDL 673 +LE AR AK +L DP L Sbjct: 656 ILEQARYYAKSVLKLDPSL 674 >gi|158320474|ref|YP_001512981.1| ATP-dependent DNA helicase RecG [Alkaliphilus oremlandii OhILAs] gi|158140673|gb|ABW18985.1| ATP-dependent DNA helicase RecG [Alkaliphilus oremlandii OhILAs] Length = 678 Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust. Identities = 244/667 (36%), Positives = 383/667 (57%), Gaps = 22/667 (3%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75 +GVG K + L+K+ N F D++++ P + DR KI+++ T GY Sbjct: 11 LKGVGPKKAYLLNKL------NIKTFKDMIWHFPRDYEDRGNIRKIAQLIPGEKTTFYGY 64 Query: 76 ISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133 I + K+ K ++ D TG++ ++FF + LK G+++ + G++KK Sbjct: 65 IYGEAEISKPKKNMSLIKFIVKDETGQVEIVFFNKV--YLKKAITSGQRVMINGEVKKTF 122 Query: 134 NRIIMVHP--HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIE 190 + +V+P I ++ ++ +Y GLS + KI + + + + E++ Sbjct: 123 KGMQIVNPVLEKINQEEEEGRHGIV-PIYPSTEGLSQNEILKIQRDMIRVVKESIVEYLP 181 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 +L++K I A IH P K + A+ RL ++E L Q+ LL ++K KE Sbjct: 182 DELIKKHKLCHIQFALENIHFPNSVKSLKI---AKYRLVFEEFLFLQLGLLKIKKDHTKE 238 Query: 251 I-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309 GI + + I ++ + ++PF+ T +Q+ +K+I QD+ + M R++QGDVGSGKT+V Sbjct: 239 KEGIVLKKKEGI-EEFIESLPFTLTAAQDKVVKEICQDLERDIPMNRLVQGDVGSGKTIV 297 Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369 A+IA+ AV G Q +MAP ILA+QHY + I V ++ G++ ++ + K L Sbjct: 298 AIIALFKAVINGYQGAMMAPTEILAEQHYLSLTDLLSPFGIHVGLLVGSLSKSEKNKILN 357 Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429 I G+ +I++GTHAL Q+ + + L LVI DEQHRFGV+QR LT K PHVL+MTAT Sbjct: 358 GIETGEINIVVGTHALIQEGVNFANLSLVITDEQHRFGVRQRSTLTSKGNNPHVLVMTAT 417 Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489 PIPRTL L GD+DIS I P GRK IKT N+ E+ L L EG++AY +C Sbjct: 418 PIPRTLALILYGDLDISIIDHLPPGRKCIKTYSRTSNKRKEIYNFLGKQLDEGRQAYVVC 477 Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 P +EE + + +S E L + ++HG+M DKE +M +FK G ++L++ Sbjct: 478 PLVEESEAIDAQSATEIAEELSCDLLKGYKVGLLHGKMPPKDKEEIMKAFKEGNIQVLVS 537 Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607 TTVIEVG++V +A+++++ENAE FGLAQLHQLRGRVGRG S CIL+ + S+ S R Sbjct: 538 TTVIEVGVNVPNATMMVVENAERFGLAQLHQLRGRVGRGSHQSYCILINNSK-SEISKAR 596 Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 +++++ T DGF+I+E+DL+ R GE G +Q G+P+ IA H S+L+ + + + I Sbjct: 597 MAIMEKTTDGFVISEKDLELRGPGEFFGTRQHGLPELKIANLFKHLSVLKTVQAEVESIA 656 Query: 668 TQDPDLT 674 +D LT Sbjct: 657 EEDFSLT 663 >gi|312879670|ref|ZP_07739470.1| DEAD/DEAH box helicase domain protein [Aminomonas paucivorans DSM 12260] gi|310782961|gb|EFQ23359.1| DEAD/DEAH box helicase domain protein [Aminomonas paucivorans DSM 12260] Length = 686 Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust. Identities = 221/668 (33%), Positives = 357/668 (53%), Gaps = 15/668 (2%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P+S GVG + LS++ D LF P + DR + E+ E R Sbjct: 10 PVSRLPGVGPRREAGLSRL------GVRTLRDALFLFPRRYEDRRRLTPLEELQEGRPAL 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 G + + SS + Q + + LL+D TG + LL+F+R + G + G+ + Sbjct: 64 FRGRVGELSSQRSQGKHRVRGLLSDPTGCLRLLWFHRPG--VAAQLPPGTEAVFWGRPAR 121 Query: 132 LKNRIIMVHPHYIFHN-SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWI 189 + ++ V+P + + Q + I VY GL + ++ + R P +PE + Sbjct: 122 FGDALVCVNPEFWTGSVPQGEEWGRIVPVYPGTEGLPPRWLRSFLLSQVERCAPQIPEEL 181 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249 + L++++ + EA +H P + W AR RLAY ELL Q+ L R+ Sbjct: 182 PESLIRRRGLLPLKEAVRQLHAP--DDEVRWRE-ARRRLAYQELLELQVPFALRRRAAAS 238 Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309 + E ++++ ++PF PT Q A++ + D+ ++ M R+LQGDVGSGKTLV Sbjct: 239 LPPPVLRCEKGVSERFWADLPFDPTPGQREALRALEADLGGRHPMNRLLQGDVGSGKTLV 298 Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369 AL A+ + G Q +AP ILA+Q +E ++ V+++ G R + E Sbjct: 299 ALGALHLVLRGGAQGAYLAPTEILARQVWEVARRLPALAPFPVDLVLGGRSLREREEQAE 358 Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429 + + +++GTHAL +DS+++ +L L ++DEQHRFGV QR L K +PH+L+MTAT Sbjct: 359 ALERPEPRLVVGTHALLEDSVRFSRLGLAVIDEQHRFGVAQRAALAAKGRSPHLLVMTAT 418 Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489 PIPRTL L GD+ + + P GR P+ T ++ + V+ L+ L+ G +A+W+C Sbjct: 419 PIPRTLSLALFGDLSSLALRDLPPGRSPVVTRVLGQKDLRRVLAFLRQELARGGRAFWVC 478 Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIAT 548 P +EE + + ++R +L S ++HGR+ K + ++ F++G +LL+ T Sbjct: 479 PLVEESEGTGLPGAMQRREALARALPESCPEVVHGRLDGAAKAAALERFRSGESRLLVGT 538 Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608 TV+EVGIDV +A+++++E+ E FGL+QLHQLRGRVGRG C+LL ++S RL Sbjct: 539 TVLEVGIDVPEATVMVVEHGERFGLSQLHQLRGRVGRGSSRGVCLLLSGTE-EEDSLRRL 597 Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668 +L+ DGF IAE D R GE+ G++Q G F +A + +LLE AR+DA+ + Sbjct: 598 RILERIGDGFRIAEADCALRGGGEMGGVRQHGDSGFKVADLRVDAALLEQARQDAQDWVD 657 Query: 669 QDPDLTSV 676 +P L S Sbjct: 658 AEPALDSC 665 >gi|256823635|ref|YP_003147598.1| ATP-dependent DNA helicase RecG [Kangiella koreensis DSM 16069] gi|256797174|gb|ACV27830.1| ATP-dependent DNA helicase RecG [Kangiella koreensis DSM 16069] Length = 700 Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust. Identities = 254/645 (39%), Positives = 375/645 (58%), Gaps = 27/645 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI--SEERI 69 P ++ +GVG K + L K+ + +DLLF+ P + DR I+ + E + Sbjct: 16 PCTSLKGVGPKVAEKLEKL------HIQSVLDLLFHLPLRYEDRTRVRTIASLKDGERAL 69 Query: 70 VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + +T ++Q + KRR +D + I FFY + G + G++ Sbjct: 70 IKVTVELAQ---VKFGKRRSLVCRASDESASIDFRFFYFNKGQ-QQRLQRGAEFYAFGEV 125 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLPVLP 186 ++ + MVHP NS + PL+E+ +Y GL F+ ++ +A++ L P Sbjct: 126 RRYGFQFSMVHPELTAINS-TTSAPLLESLTPIYPATEGLHQASFRHMMRQAVALLKKHP 184 Query: 187 --EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIAL 240 + + LLQ P + + IH+P K D +PA RL +ELLA Q++L Sbjct: 185 IDNLLPQSLLQSLKLPDVNASLAWIHSPPKDADLVQLQSNQTPAVRRLISEELLAQQLSL 244 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 LL R Q K + GK+ ++L+ +PF PTK+Q+ ++I+ D+ Q + MLR+LQG Sbjct: 245 LLQRNQQKDYSAPVLKNSGKLQDQLLQQLPFKPTKAQQRVTQEIISDLEQPHPMLRLLQG 304 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVG+GKTLVA +A A+EAG Q IMAP +LA QHY+ ++ + I + + Sbjct: 305 DVGAGKTLVAALAALQAIEAGYQVAIMAPTELLANQHYQSFGQWFEAMNIPCVFLASKLT 364 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 + R+ ALE IA G+A +I+GTHALFQ ++Y+KL L I+DEQHRFGV QRL L QKA Sbjct: 365 ASQRKSALESIASGEAKLIVGTHALFQKGVEYHKLGLAIIDEQHRFGVNQRLMLKQKAPD 424 Query: 421 P---HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 H L+MTATPIPRTL +T D+D+S I E P GR P++TV + + D+VI+R++ Sbjct: 425 GMQLHQLMMTATPIPRTLAMTVYADMDVSIIDELPPGRTPVQTVALSDQKRDQVIQRIET 484 Query: 478 VL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMD 535 E ++ YW+C I+E +E ++ N L E + + ++HGR+ K+ VMD Sbjct: 485 ACRDENRQVYWVCTLIDESEEIQCQAAESAANLLTEQLPNCRVGLLHGRLKPEQKQLVMD 544 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK G +L+ATTVIEVG+DV +AS+++IEN E GL+QLHQLRGRVGRG S C+LL Sbjct: 545 KFKQGDLDILVATTVIEVGVDVPNASLMVIENPERLGLSQLHQLRGRVGRGSVESHCVLL 604 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 Y PLS N+ R+ V++ T DGF+IAEEDL+ R GE+LG +Q+G Sbjct: 605 YQHPLSDNAKARIQVMRETNDGFVIAEEDLRLRGPGEMLGTRQTG 649 >gi|331009375|gb|EGH89431.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 488 Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust. Identities = 204/457 (44%), Positives = 298/457 (65%), Gaps = 6/457 (1%) Query: 224 ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283 A+ RLA++ELL Q++ +R+ + + + V K+ ++ L N+ F+PT +Q+ K+ Sbjct: 17 AQHRLAFEELLTHQLSQQRLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKE 76 Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343 + D+SQ MLR++QGDVGSGKT+VA +A A+EAG Q +MAP ILA+QHY ++ Sbjct: 77 VAYDLSQPEPMLRLIQGDVGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQR 136 Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403 + + + V + G + R +LE+IA G +++GTHALFQD +Q+ L LVI+DEQ Sbjct: 137 WLEPLGVGVAWLAGKLKGKARATSLEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQ 195 Query: 404 HRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 HRFGVQQRL L +K PH L+MTATPIPRTL +++ D+D S + E P GR P+ Sbjct: 196 HRFGVQQRLALRKKGVGGLMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVN 255 Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518 TV++ +R EV+ER++ +EG++AYW+C IEE +E ++ + L + Sbjct: 256 TVLVADSRRLEVVERVRAACAEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGEVRV 315 Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578 +IHGRM +K ++M FK G +LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQ Sbjct: 316 GLIHGRMKPAEKAAIMAEFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQ 375 Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638 LRGRVGRG +S C+LLYHPPLS+ RL +++ T DGF+IAE+DL+ R GE+LG +Q Sbjct: 376 LRGRVGRGSAVSHCVLLYHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQ 435 Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 +G+ +F +A LL R A+ +L + P S Sbjct: 436 TGLLQFKVADLMRDADLLPAVRDAAQALLERWPQHVS 472 >gi|82523708|emb|CAI78489.1| RecG-like helicase [uncultured beta proteobacterium] Length = 678 Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust. Identities = 233/644 (36%), Positives = 355/644 (55%), Gaps = 15/644 (2%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR DL+ + P + D I ++ + + + + + + RR + + D + Sbjct: 25 TRDADLVLHLPLRWEDETRITPIRDLLPGQTAQVQAVVRE-AKVAYRPRRTLTVTVEDAS 83 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL--- 155 G + L F LK +F G + G+++ + MVHP + + D + PL Sbjct: 84 GVLGLRFLNFYPSHLK-LFQPGEHFRINGEVRGGFLGLEMVHPRF---SKADDSTPLPTQ 139 Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215 + VY GL +K++ AL P+ + + L + P + + ++H P Sbjct: 140 LTPVYPTTAGLGQATLRKLVTRALE-APIT-DTLPAAWLTELGLPELESSIRLLHQPPHD 197 Query: 216 KDF-EWTS---PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271 E S PA +RLA+DELLA QI+L R+Q + + P+ + ++ + +PF Sbjct: 198 SALAELESHRHPAWQRLAFDELLAQQISLATSRRQRRSQRTTPLPAKQQLTTVFTQTLPF 257 Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331 T +Q A ++I D+ Q + M R+LQGDVGSGKT+VA +A A+E G QA MAP Sbjct: 258 ELTSAQAHAWQEISADLEQPHPMRRLLQGDVGSGKTVVAALACLQAIENGLQAAFMAPTE 317 Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391 ILA+QHY + + ++G+ ++ R A + IA G+ + GTHALFQ++ Sbjct: 318 ILAEQHYRKLASPLSALGVRCAWVSGSQKKSERTAAWQAIAAGEIDLAFGTHALFQEAGS 377 Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451 + +L L +VDEQHRFGV QRL L QK PH L+M+ATPIPRTL ++ D+D+S I Sbjct: 378 FARLGLAVVDEQHRFGVGQRLALMQKGIEPHQLMMSATPIPRTLAMSFFADLDVSVIDAL 437 Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511 P GR P+ T ++ R D+V+ R++ G +AYW+CP IEE ++ ++ + +L Sbjct: 438 PPGRTPVVTKLVSAARRDDVVARIREACLAGGQAYWVCPLIEESEKLQLQTAQDTHAALA 497 Query: 512 EHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 I ++HGR+ +K++VM +F+ LL+ATTVIEVG+DV +A++++IE+AE Sbjct: 498 AQLPELRIGLVHGRLKSNEKQAVMAAFQAHEIDLLVATTVIEVGVDVPNAALMVIEHAER 557 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630 GLAQLHQLRGRVGRG S C+LLY P+S+ + RL + DGF IA +DL R Sbjct: 558 MGLAQLHQLRGRVGRGSRESVCVLLYQTPVSELARARLKAIFELTDGFEIARQDLLLRGP 617 Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 GE+LG +QSG+P A E +LLE AR A+ L PD+ Sbjct: 618 GELLGSRQSGLPMLRFADLERDVALLESARNLAQWCLNTHPDIA 661 >gi|241759124|ref|ZP_04757233.1| ATP-dependent DNA helicase RecG [Neisseria flavescens SK114] gi|241320620|gb|EER56890.1| ATP-dependent DNA helicase RecG [Neisseria flavescens SK114] Length = 729 Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust. Identities = 229/600 (38%), Positives = 342/600 (57%), Gaps = 7/600 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H + R+ + + DG+G + L F + G++I G+IK M Sbjct: 114 HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQMAAGKRIRAVGEIKHGFYGDEM 173 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP + L VY GL+ ++II AL P L + + LL + Sbjct: 174 IHPKIRDAEGSGLAESLT-PVYPTVNGLNQSTLRRIIQTALDVTP-LHDTLPDALLGRLK 231 Query: 199 FPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 P +AE+ ++H+P + S PA +RL +DELLA Q+++ L R++ Sbjct: 232 LPHLAESLRLLHSPPPSFTIHQLSDGALPAWQRLKFDELLAQQLSMRLARQKRVSGTAAA 291 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + +G + Q + +PF+ T +QE + +I +DM+Q + M R+LQGDVGSGKT+VA +++ Sbjct: 292 LGGDGTLTQALRHALPFALTDAQERVVSEIRRDMAQTHPMHRLLQGDVGSGKTIVAALSV 351 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A+E+G QA +MAP ILA+QH+ K++ + + V ++G+ + + +A ++A G Sbjct: 352 LTAIESGAQAAVMAPTEILAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADG 411 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 I +GTHALF D +++ L LVIVDEQHRFGV QRL L K H L+M+ATPIPRT Sbjct: 412 TVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLALKNKGRDVHQLMMSATPIPRT 471 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I E P GR PIKT ++ R EV + + +G++AYW+CP IEE Sbjct: 472 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIEE 531 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ E L +I ++HGRM +K VM F G +L+ATTVIEV Sbjct: 532 SETLQLQTATETLEQLQTALPELNIGLVHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEV 591 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +A++++IE+ E GLAQLHQLRGRVGRG S C+LL+ PLS+ + RL V+ Sbjct: 592 GVDVPNAALMVIEHVERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYE 651 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA +DL R GE LG +QSG+P A E LLE AR+ A ++ Q+P++ Sbjct: 652 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEEDLHLLEQAREIAPMLIEQNPEI 711 >gi|325982473|ref|YP_004294875.1| ATP-dependent DNA helicase RecG [Nitrosomonas sp. AL212] gi|325531992|gb|ADZ26713.1| ATP-dependent DNA helicase RecG [Nitrosomonas sp. AL212] Length = 679 Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust. Identities = 228/645 (35%), Positives = 358/645 (55%), Gaps = 14/645 (2%) Query: 42 IDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101 +DL+ + P + D + I + + V + G I H+ ++ RR + D +G + Sbjct: 20 LDLILHLPIRYEDETHLFPIGDAPQGHTVQVEGVII-HNEVVIRPRRQLICRIEDSSGIL 78 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161 + F + +K + G+++ + G+I+ MVHP + + + +Y Sbjct: 79 VMRFVNFYSSQIKT-YAVGKRVRLLGEIRNGFFGAEMVHPKCRIVRAGESLAHSMTPIYP 137 Query: 162 LPTGLSVDLFKKIIVEALSR---LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 GL KII + L + L E + +++K E+ +H+P + Sbjct: 138 TTAGLMQKTLAKIIKQGLHNAQMVQALIETVPDKIIRKYRLKGFEESVMCLHHPSPEESI 197 Query: 219 EW----TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274 E T PA R+ +DELLA Q+++ L +Q + + + +A+++L + F T Sbjct: 198 EALQTRTHPAWRRIKFDELLAQQLSMRLHYRQRRSHTAPVLEQKNILAKQLLAQLGFELT 257 Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334 +Q +I D++ M R+LQGDVGSGKT+VA +A A+E G QA IMAP ILA Sbjct: 258 SAQLKVYAEIGHDLTVAYPMQRLLQGDVGSGKTIVAALAALQAIENGFQAAIMAPTEILA 317 Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394 +QH+ + + + + V ++G M + ++ +++I G A +++GTHALFQ + +++ Sbjct: 318 EQHFMKLSAWLEPLGVHVAWLSGGMRKKQKQAEMDKIESGVAQLVVGTHALFQYQVVFHQ 377 Query: 395 LILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITE 450 L L I+DEQHRFGV QRL L K PH L+M+ATPIPRTL ++ D+D+S I + Sbjct: 378 LGLAIIDEQHRFGVHQRLALRMKGAQSDLMPHQLMMSATPIPRTLSMSYFADLDVSIIDQ 437 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P GR P+ T +I R DE+I R+ + ++ YW+CP IEE + ++ +E + L Sbjct: 438 LPPGRSPVITKLIADRRRDEIIARIHFACQQDRQVYWVCPLIEESEALQLQAAMETYQHL 497 Query: 511 HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 + F ++ ++HGR+S +K +M FK G +LL+ATTVIEVG+DV +AS+++IENAE Sbjct: 498 RKIFPELNVGLVHGRLSPQEKAEIMLLFKEGKIQLLVATTVIEVGVDVPNASLMVIENAE 557 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629 GL+QLHQLRGRVGRG + S CILL+ PLS+ + RL ++ DGF IA +D++ R Sbjct: 558 RMGLSQLHQLRGRVGRGSDASICILLFQQPLSEIARKRLRIIFEHTDGFEIAHQDMQLRG 617 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 GE LG +QSGMP A E LLE A A +L P+L Sbjct: 618 PGEFLGARQSGMPMLRFADLEQDGELLEAALDSANEMLNNYPELA 662 >gi|300767263|ref|ZP_07077175.1| DNA helicase RecG [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180477|ref|YP_003924605.1| DNA helicase RecG [Lactobacillus plantarum subsp. plantarum ST-III] gi|300495082|gb|EFK30238.1| DNA helicase RecG [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045968|gb|ADN98511.1| DNA helicase RecG [Lactobacillus plantarum subsp. plantarum ST-III] Length = 679 Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust. Identities = 232/671 (34%), Positives = 386/671 (57%), Gaps = 30/671 (4%) Query: 13 LSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 ++T GVG L+++ IN DLL Y+P + D + ++EI+++ VT Sbjct: 9 VATLSGVGPARQKGLAELGINT-------IADLLTYYPFRYEDLQVK-DVNEIADQEKVT 60 Query: 72 ITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 + G ++ + F +K R +++L++ ++ ++ F+ + ++K + G+ + V G Sbjct: 61 LKGTVASEPVLARFGRKKNRLNFRLLIDH---DVYMVTFFNQPYLMKQIE-TGQDLAVYG 116 Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS-RLPVLP 186 K ++ + + I N+ D F ++Y + +K+I +A PV+ Sbjct: 117 KWDATRSSLTGMK--IINPNNADSAFG---SIYPASKTVKQGTIQKMIKQAYELYAPVIT 171 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 + + +L K + + +H P D ++ AR Y+E L Q+ + ++++ Sbjct: 172 DIVPANLRAKYRLLPRRQMIHDMHFPASQAD---STAARRSATYEEFLLFQMQMQVLKQT 228 Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 GI I + + ++ +PF T +Q+ + +I D+ M R+LQGDVGSGK Sbjct: 229 DATTNGIAIAYDNDRLKAFIKTLPFELTHAQKRVVNEICLDLKSPKHMNRLLQGDVGSGK 288 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366 T+VA I M AA+ AG QA +M P ILA+QH + + +T + V ++TG A R+ Sbjct: 289 TIVAAIVMYAAITAGYQAALMTPTEILAEQHANNLAQVFADTDVNVALLTGATKPAARKT 348 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426 L +A G+ +++IGTHAL QD + Y L LVI DEQHRFGV QR QK P L M Sbjct: 349 LLAALAAGEINLLIGTHALIQDGVTYANLGLVITDEQHRFGVNQRAAFRQKGGQPDALAM 408 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486 TATPIPRTL +T+ G++D+S+I E PAGR+PI+T + N+ + + + + G +AY Sbjct: 409 TATPIPRTLAITAYGEMDVSEIDELPAGRQPIQTTWVRSNQANSALSFVHQQIDNGSQAY 468 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKL 544 + P IEE + + ++ +L E+F +S + ++HGRM +K++VM +FK G +L Sbjct: 469 VVTPLIEESETLDVKNAEALSANLQEYFGASVKVGLLHGRMKPEEKDAVMAAFKAGDIQL 528 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 L++TTVIEVG+DV +A+I++I +A+ FGLAQLHQLRGRVGRG + S CIL+ P ++ Sbjct: 529 LVSTTVIEVGVDVKNATIMMIYDADRFGLAQLHQLRGRVGRGTKASYCILVADPK-NQQG 587 Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 R+ ++ T +GF++A++DL+ R G++LG+KQSGMP+F + P ++L++A++DA Sbjct: 588 IERMQIMTQTTNGFVLAQKDLELRGAGDVLGVKQSGMPEFKVGDPIADLTVLQVAQQDA- 646 Query: 665 HILTQDPDLTS 675 H + Q PD S Sbjct: 647 HAIVQQPDWQS 657 >gi|90023357|ref|YP_529184.1| ATP-dependent DNA helicase RecG [Saccharophagus degradans 2-40] gi|89952957|gb|ABD82972.1| ATP-dependent DNA helicase RecG [Saccharophagus degradans 2-40] Length = 695 Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust. Identities = 242/661 (36%), Positives = 362/661 (54%), Gaps = 26/661 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +GVG K + L+K+ DLLF+ P ++DR I ++ Sbjct: 12 PVTVVKGVGGKLAQTLAKL------GIHTLQDLLFHLPHRYVDRTRITPIGKLRLNMAAV 65 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + ++ Q +RR + D TG + ++ FY + K+ G + G+ + Sbjct: 66 VQGCVVS-ANIQFGRRRSLACTIEDDTGSL-MMRFYHFSAAQKDKLEPGTLVRCYGEPRM 123 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRL----PV 184 + HP Y + P+ EA VY L G++ +K+ +AL L P Sbjct: 124 GTTGLEFYHPEYDIVDDPSAK-PVEEALTPVYGLTEGITQPRIRKLAEQALLELKHHNPA 182 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIAL 240 E++ ++ Q S+A+A +H P E P ++RLA++ELLA +A Sbjct: 183 --EYLPPEVGQMFGVDSLADALRYLHAPPPDAPVEQLIAGLHPYQQRLAFEELLAHYLAR 240 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 R + + E + V + Q L +PF+PT +Q + DI +D+ + MLR++QG Sbjct: 241 QEARARAQAEASPVLRVAEQQRQAFLAQLPFTPTFAQTRVLGDINRDLQEGKPMLRMVQG 300 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKTLVA +A + AG Q ++AP ILA+QH+ + + V + G + Sbjct: 301 DVGSGKTLVAALAALDVISAGYQVALVAPTEILAEQHFIAFSNWLEPLGFNVAWLVGKLT 360 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-- 418 + RR + IA G+ +++GTHALFQD + + L L IVDEQHRFGV QRL L QK+ Sbjct: 361 ASKRRDTVASIAAGEVDVVVGTHALFQDDVLFASLGLAIVDEQHRFGVNQRLTLRQKSID 420 Query: 419 -TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 T PH L+MTATPIPRTL +T+ ++D S I E P GR P+ TV+I R +VIER+ Sbjct: 421 GTIPHQLVMTATPIPRTLAMTAYAELDYSVIDELPPGRTPVNTVLISQKRRPQVIERILA 480 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 E K+ YW+C +E+ + + E L +I ++HGR+ +KE+VM + Sbjct: 481 ACKENKQVYWVCTLVEDSETLAAANAEETAELLKNALKDINIGLVHGRLKAAEKEAVMKA 540 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK G +LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C++LY Sbjct: 541 FKAGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSIASHCVMLY 600 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 LS + RL V++ T DGF IAE+DL R GE+LG +Q+G ++ +A + +L Sbjct: 601 GDKLSMQAKERLGVMRETNDGFEIAEKDLALRGPGELLGTRQTGEMEYRLADLQRDAGML 660 Query: 657 E 657 + Sbjct: 661 D 661 >gi|15607024|ref|NP_214406.1| ATP-dependent DNA helicase RecG [Aquifex aeolicus VF5] gi|3914614|sp|O67837|RECG_AQUAE RecName: Full=ATP-dependent DNA helicase recG gi|2984279|gb|AAC07804.1| ATP-dependent DNA helicase RecG [Aquifex aeolicus VF5] Length = 792 Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust. Identities = 254/667 (38%), Positives = 387/667 (58%), Gaps = 33/667 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 D LFY P + D+ I + ++ + + +R +++ DGTG IT Sbjct: 121 DALFYFPEKYEDKRLNTSI-KTAKVGEKVALKVKVKEVKIKENERYTLEVVCTDGTGYIT 179 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162 L + Y+ F +G +I V GK+K K MVHP +S+++ +I Y Sbjct: 180 LKYRYKNPHFALKAFRKGMEIVVYGKLKSFKGEKYMVHPEVKSPSSEELG-KIIPVYYVR 238 Query: 163 PTG----LSVDLFKKIIVEALSRLP-----VLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213 G +S +K + AL+ L PE++ L++K +FP IA +HNP Sbjct: 239 KRGELQEISSKTKQKRVRTALTALSESLYRYFPEYMPDYLIEKYNFPDIALCIKELHNP- 297 Query: 214 KAKDFE------WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267 KD +T +R+ YDEL Q+ALLL +++ KKE +NV+ K +K + Sbjct: 298 --KDISVNALNSFTDLYHKRVIYDELFLFQLALLLKKQEIKKEKAPKVNVDEKFLRKAIE 355 Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 +PF T++QE AIK+IL+D+S+ M R+LQGDVGSGKT+VA++ A V++G Q +M Sbjct: 356 KLPFKLTRAQERAIKEILEDLSRDVPMNRLLQGDVGSGKTIVAILTSLAVVKSGYQVAVM 415 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILA QHY+ + ++ + V ++TG++ + ++ + + G H+++GTHAL Q Sbjct: 416 VPTEILAHQHYKKFSEMLKDYGVNVALLTGSLTPSQKKSVYKHVKEGNIHVLVGTHALIQ 475 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPRTLVLTSLGDIDI 445 D +++ L VI+DEQHRFGV QR L +K PH L+M+ATPIPRTL L+ GD+DI Sbjct: 476 DKVEFKNLGYVIIDEQHRFGVMQRKLLLEKGKGLYPHCLVMSATPIPRTLALSIYGDLDI 535 Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 S I E P GRK + T + ++ +EV ++++ L +G K Y I P IEE ++ N ++ E Sbjct: 536 SIIDELPPGRKEVITKLYFESQKEEVYKKVEEELKKGNKVYVIYPLIEESEKLNLKAATE 595 Query: 506 RFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + + F + ++HG+M D +K +VM+ FK +L++TTVIEVGIDV +A++++ Sbjct: 596 EYERWKKLFPDRKVLLLHGKMPDKEKLAVMEEFKR-EGDILVSTTVIEVGIDVPEATVMV 654 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN----SYTRLSVLKNTEDGFLI 620 IE+A FGL+QLHQLRGRVGR ++ + C+L+ P KN S RL V T DGF I Sbjct: 655 IEDAHRFGLSQLHQLRGRVGRSDKEAYCLLVV-PDEIKNEKNESLKRLRVFVKTTDGFKI 713 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQ-PELHD-SLLEIARKDAKHILTQDPDLTSVRG 678 AEEDLK R GEI+G+ QSG F +A D +LL +ARKDA+ +L +P+L ++ Sbjct: 714 AEEDLKLRGPGEIIGVSQSGYFGFRVANLARSQDRALLGVARKDAEELLKNNPNLENL-- 771 Query: 679 QSIRILL 685 Q ++ LL Sbjct: 772 QDLKKLL 778 >gi|170732045|ref|YP_001763992.1| ATP-dependent DNA helicase RecG [Burkholderia cenocepacia MC0-3] gi|254246279|ref|ZP_04939600.1| RecG-like helicase [Burkholderia cenocepacia PC184] gi|124871055|gb|EAY62771.1| RecG-like helicase [Burkholderia cenocepacia PC184] gi|169815287|gb|ACA89870.1| ATP-dependent DNA helicase RecG [Burkholderia cenocepacia MC0-3] Length = 773 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 242/660 (36%), Positives = 366/660 (55%), Gaps = 25/660 (3%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D I E+ I G + + + RR + + D Sbjct: 100 TRSIDLVLHLPMRYEDETTLTPIGELLPGGIAQTEGVVFDNE-VAYRPRRQLVVKIQDDD 158 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIE 157 GE +L F G+++ V G ++ + MVHP + D P ++ Sbjct: 159 GEQLVLRFLNFYGSQVKQMAVGQRLRVRGDVRGGFFGMEMVHPAVRVVEA-DAPLPQVLT 217 Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 VY G+S +K I A+ R P+ LP I++D L+ P++ +A I+H+PR Sbjct: 218 PVYPSTAGVSQAYLRKAIENAVERTPLPELLPPEIQRDYLKPLDVPTLEQAVRILHHPRV 277 Query: 215 AKD----FEWTSPARERLAYDELLAGQIALLLM--RKQFKKEIGIPINVEGKIAQKILR- 267 D + + PA R+ ++ELLA Q++L ++ + +P R Sbjct: 278 DSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAAPAMPRRTATDTDALTTRL 337 Query: 268 --NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 +PF+ T +Q + +I D++ + M R+LQGDVGSGKT+VA +A A A++AG QA Sbjct: 338 YAALPFTLTGAQARVVDEIAHDLTLAHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQAA 397 Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +MAP ILA+QH ++ + + + V + G++ +R A+E A G A ++IGTHA+ Sbjct: 398 LMAPTEILAEQHARKLRAWLEPLGVTVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTHAI 457 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLV 436 QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRTL Sbjct: 458 IQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAANGARDFQPHQLMMSATPIPRTLA 517 Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496 +T D+++S I E P GR P+ T ++ R +EVI R++ G++ YW+CP IEE + Sbjct: 518 MTYYADLEVSTIDELPPGRTPVLTRLVGDARREEVIARVREAALTGRQVYWVCPLIEESE 577 Query: 497 ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555 ++ VE + +L + ++HGR+S DK +VM++F +LL+ATTVIEVG+ Sbjct: 578 TLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMEAFTRNEVQLLVATTVIEVGV 637 Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615 DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+LLY PLS RL ++ T Sbjct: 638 DVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYTGPLSLTGRERLKTMRETT 697 Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 DGF IA DL+ R GE LG +QSG A E L++ AR+ A ++ P++ + Sbjct: 698 DGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLIDPAREAAARLIAAYPEVVT 757 >gi|108763623|ref|YP_631603.1| ATP-dependent DNA helicase RecG [Myxococcus xanthus DK 1622] gi|108467503|gb|ABF92688.1| ATP-dependent DNA helicase RecG [Myxococcus xanthus DK 1622] Length = 669 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 233/652 (35%), Positives = 363/652 (55%), Gaps = 16/652 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISE-ERIVTITGYISQHSSF--QLQKRRPYKILLNDGTG 99 D+LF P + DR I+E+ ER VT+ I + + F Q RR ++ ++ D +G Sbjct: 3 DILFMLPRCYEDRRQLRTIAELEPGERGVTVG--IVKVADFVPGRQGRRMFRAVVGDRSG 60 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY----IFHNSQDVNFPL 155 I +F LK+ F G++I ++G+++ + M HP ++ V+F Sbjct: 61 SIAATYF-NAGPWLKSRFTVGKRIVLSGEVRATMSGREMPHPEIEPAEDIESTTSVHFNR 119 Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 I VY F+++ + L + + DL ++ + +A IH P Sbjct: 120 IVPVYPGFERGEQRSFRELTSRVGEQYAHELDDPLPADLRRRLDLMGLPDALRFIHFPPG 179 Query: 215 AKDFEW----TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270 D E SPA RLA+DEL Q+ + L R+ K E+GI +V K +P Sbjct: 180 DADLEALDAHQSPAHRRLAFDELFFLQLGMALKRQGVKAEVGISFDVSEPRLAKARNALP 239 Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T +Q ++++ DM++ M R++QGDVGSGKT VA+++ A++AG Q +MAP Sbjct: 240 FQLTGAQARVVEELCWDMARPEPMNRLVQGDVGSGKTAVAMVSALIALQAGYQVAVMAPT 299 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 ILA+QH +K + V +++ +R+ E +A G+ H+ +GTHAL Q + Sbjct: 300 EILAEQHERNFRKVMEPLGYRVGLVSAAGTAKAKRQVREAVARGEVHLAVGTHALLQADV 359 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + +L LV++DEQHRFGV QR L K P VL+MTATPIPRTL +T GD+D+S I + Sbjct: 360 SFDRLGLVVIDEQHRFGVLQRHTLMSKGPKPDVLVMTATPIPRTLAMTLYGDLDLSVIDQ 419 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P GR PI+T + + V E + L++G +AY + P +EE ++ + L Sbjct: 420 LPPGRTPIQTRVFNDKQRALVYESVGAQLAKGHQAYVVYPLVEESEKLDLEDATRGVEKL 479 Query: 511 HEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 + F + + ++HGRM +K+SVM+ F+ LL+ TTV+EVG+DV +AS++++E+AE Sbjct: 480 RKVFPDAKVGLLHGRMKAEEKDSVMEDFREKRLHLLVCTTVVEVGVDVPNASVMVVESAE 539 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629 FGL+QLHQLRGRVGRG S C L+ S S RL+V++ + DGF+IAE+DL+ R Sbjct: 540 RFGLSQLHQLRGRVGRGAAASFCHLVAGSARSWESAERLTVMEQSSDGFVIAEKDLEIRG 599 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681 GE LG +QSG+P+ +A LL +A+ +A+ IL +DPD+ + Q + Sbjct: 600 PGEFLGTRQSGLPELAVANLARDGDLLSMAQSEARRILEKDPDMKAKENQGL 651 >gi|123966061|ref|YP_001011142.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str. MIT 9515] gi|123200427|gb|ABM72035.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str. MIT 9515] Length = 818 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 241/650 (37%), Positives = 365/650 (56%), Gaps = 25/650 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99 DL+ Y P +++D R KI + + + T I + S ++ Q I+ + D T Sbjct: 151 DLINYFPRTYLDYTNRVKIVNLKPDNLYTCIATIKKFSIYKSQNNSNLSIMNIVIFDETS 210 Query: 100 EITLLFF-----YRKTEML---KNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV 151 I + F YR K+++ G KI ++GK+K + + P N+ D Sbjct: 211 SIKVTKFFLGKRYRSYSFYTSQKSLYIPGTKIAISGKVKLSEYGKNFIDPQIEILNNNDE 270 Query: 152 NFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI 208 +F I +YSL S F K+I + + P+ + + + S +++ Sbjct: 271 SFNFSGKIMPLYSLSESFSNISFIKLIKKVIIYSKDYPDLLTQKQISSLSLLPKSDSLIN 330 Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLL-MRKQFKKEIGIPINVEGKIAQKILR 267 IH P + +++RL +DEL Q+ LL RK KK + + Q L Sbjct: 331 IHLPPNQ---DALIESKKRLVFDELFLLQMKFLLRKRKNNKKSTNRTFAQKRFLLQDFLN 387 Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 IPF TKSQE + +I D+S M R+LQGDVGSGKT++A++++ +E Q +M Sbjct: 388 KIPFQLTKSQEKVLDEIKLDISDLTPMSRLLQGDVGSGKTIIAIVSLLIILEKDQQGALM 447 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LA QHY+ + KY + VE++TGN PQ R++ L + +G I++GTHALF+ Sbjct: 448 VPTEVLANQHYKNLLKYLNPLSVSVELLTGNTPQKKRKEILINLKNGMVDILVGTHALFE 507 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D + + L +V++DEQHRFGV QR +L K ++L MTATPIPRTL L+ GD+DIS+ Sbjct: 508 DKVIFNSLGMVVIDEQHRFGVTQRNRLLNKGDNTNLLSMTATPIPRTLALSLYGDLDISQ 567 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 ITE P GR PI T II + +D++ ++ + GK+AY I P IE+ ++ N S F Sbjct: 568 ITELPPGRVPIITKIITEDDLDKLFSLVENEIDNGKQAYVILPLIEDSEKMNLSSAKNIF 627 Query: 508 NSLHEH--FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 L E + + ++HG+++ +K V++SF +L++TTVIEVGIDV +ASI+II Sbjct: 628 QYLSEEIFLKNKVGLLHGKLNSDEKNIVINSFLKNEISILVSTTVIEVGIDVPNASIMII 687 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEE 623 N+E FGL+QLHQLRGRVGRG S C L+ KN RL VL+ + DGF IAE+ Sbjct: 688 YNSERFGLSQLHQLRGRVGRGTHKSFCYLITS---DKNGLENKRLKVLEKSNDGFYIAEK 744 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DL+ R G++LG KQSG+P F++ + L+E AR++A++++ DPDL Sbjct: 745 DLEIRGPGQLLGYKQSGLPDFVLDNLPNNKVLIEKAREEAQNVIKDDPDL 794 >gi|291279604|ref|YP_003496439.1| ATP-dependent DNA recombinase RecG [Deferribacter desulfuricans SSM1] gi|290754306|dbj|BAI80683.1| ATP-dependent DNA recombinase RecG [Deferribacter desulfuricans SSM1] Length = 762 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 237/597 (39%), Positives = 347/597 (58%), Gaps = 30/597 (5%) Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 E + + GK K N + HP IF +VN I +YSLP+ ++ + KI+ +A Sbjct: 181 ENKAYYLFGKKSKFNNLPAITHP--IFLKDYEVN--KIIPIYSLPSKIANKTYYKIVQKA 236 Query: 179 L-----SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS----PARERLA 229 S + LP + LL K +P I +A IH P + E + PA +R Sbjct: 237 YFNFRDSFIETLPHY----LLMKYGYPEIKQALKQIHFPEDIQAAENLTEKKHPAFQRFV 292 Query: 230 YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289 Y+EL QI LL ++ K +GI V+ +++ +PF T SQ+ + +I DM Sbjct: 293 YEELFYLQIGLLANKQILKSTLGIKFEVDLDKLKELKDFLPFELTSSQKRVLAEIFNDMK 352 Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-----FIKKY 344 + N+M R++QGDVGSGKT+VA IA AV Q I+AP +LA+QHY F KY Sbjct: 353 KINQMNRLIQGDVGSGKTIVAFIAGIVAVFNKYQVAIIAPTEVLAEQHYNNFVNLFGDKY 412 Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404 T+ +ITG+ P+ + E+I+ G+ I GTHAL Q+ + + L L I+DEQH Sbjct: 413 TK------ALITGSTPKKEKEILKEKISKGEIDFIFGTHALIQEDVNFNALGLAIIDEQH 466 Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464 RFGV+QR L K P +LLM+ATPIPRTL LT GD+DIS I E P GRK + T Sbjct: 467 RFGVEQRKLLIDKGYNPDILLMSATPIPRTLALTFYGDLDISIIDEMPPGRKTVITKAYS 526 Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI-AIIHG 523 RI EV + +K LS+G KAY+I P IEE ++ + ++ E + + ++F + ++HG Sbjct: 527 ETRIYEVFDFVKQELSKGNKAYFIYPLIEESEKLDLKAATESYEKIKKYFGEEVVTLLHG 586 Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583 +M +K+ V+ FK G +L++TTVIEVGIDV +A++I+IENAE FGL+QLHQLRGRV Sbjct: 587 KMKSEEKKQVLHDFKYGKKSILVSTTVIEVGIDVTEATVIVIENAERFGLSQLHQLRGRV 646 Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643 GR ++ S CIL+Y +S++ R++ + GF I+E DL+ R G+ G KQSG+P Sbjct: 647 GRNDKQSYCILVYSKKISEDGKKRINAMVKYNSGFKISEIDLELRGPGDFFGTKQSGLPD 706 Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 + ++L+ ARKDA+ IL +DP+LTS + + +R L ++ + F +I G Sbjct: 707 LKFSNIIRDVAILKKARKDAETILKEDPNLTSPKNRIVRETL-TQKWKKEFDYINIG 762 >gi|330815591|ref|YP_004359296.1| ATP-dependent DNA helicase RecG [Burkholderia gladioli BSR3] gi|327367984|gb|AEA59340.1| ATP-dependent DNA helicase RecG [Burkholderia gladioli BSR3] Length = 795 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 236/638 (36%), Positives = 360/638 (56%), Gaps = 21/638 (3%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D + E+ + G + + + RR + L D Sbjct: 126 TRSIDLVLHLPMRYEDETTLTPMRELLPGELAQTEGVVYDNE-ITYRPRRQLLVRLRDED 184 Query: 99 G-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157 G E+ L F +K + G+++ V G ++ + +VHP + ++ Sbjct: 185 GSELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPAVRVVDEDTPLAQVLT 243 Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 VY G+S +K I AL+R P+ LP +E L+ P++A+A +H+P Sbjct: 244 PVYPSTAGVSQAYLRKAIDNALARTPLPELLPAEVEAAYLRPLGVPALADAVRQLHHPGV 303 Query: 215 AKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI-----NVEGKIAQKI 265 D + T PA R+ +DELLA Q++L ++ + + + + + ++ Sbjct: 304 DSDETALIDGTHPAWIRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRAADDQDSLVARL 363 Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 +PFS T +Q + +I +D++ + M R+LQGDVGSGKT+VA +A A A++AG QA Sbjct: 364 FAALPFSLTGAQTRVVDEIARDLTLAHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQAA 423 Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +MAP ILA+QH ++ + + + V + G++ +R A+E A G A ++IGTHA+ Sbjct: 424 LMAPTEILAEQHARKLRGWLEPLGVTVAWLAGSLKTRDKRSAIEAAALGTAQLVIGTHAI 483 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP-----HVLLMTATPIPRTLVLTSL 440 QD++++ +L LVIVDEQHRFGV QRL L KA P H L+M+ATPIPRTL +T Sbjct: 484 IQDTVEFARLGLVIVDEQHRFGVAQRLALRAKAGGPAGFQPHQLMMSATPIPRTLAMTYY 543 Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500 D+++S I E P GR PI T ++ R +EVI R++ G++ YW+CP IEE + Sbjct: 544 ADLEVSTIDELPPGRTPIVTKLVADARREEVIGRVRDAALGGRQVYWVCPLIEESETLQL 603 Query: 501 RSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 ++ VE + +L ++ ++HGR+S +K SVM++F +LL+ATTVIEVG+DV + Sbjct: 604 QTAVETYETLAAALPGVNVGLVHGRLSPAEKASVMEAFSRNEVQLLVATTVIEVGVDVPN 663 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619 AS+++IE+AE FGLAQLHQLRGRVGRG S+C+L+Y PLS RL ++ T DGF Sbjct: 664 ASLMVIEHAERFGLAQLHQLRGRVGRGTAASACVLMYSGPLSIAGRARLKTMRETNDGFE 723 Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 IA DL+ R GE LG +QSG A E L+E Sbjct: 724 IARRDLEIRGPGEFLGARQSGAAMLRFADLEQDGWLIE 761 >gi|221202259|ref|ZP_03575293.1| ATP-dependent DNA helicase RecG [Burkholderia multivorans CGD2M] gi|221209151|ref|ZP_03582144.1| ATP-dependent DNA helicase RecG [Burkholderia multivorans CGD2] gi|221170969|gb|EEE03423.1| ATP-dependent DNA helicase RecG [Burkholderia multivorans CGD2] gi|221177833|gb|EEE10246.1| ATP-dependent DNA helicase RecG [Burkholderia multivorans CGD2M] Length = 791 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 241/642 (37%), Positives = 357/642 (55%), Gaps = 25/642 (3%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL+ + P + D I ++ I G + + + RR + + D Sbjct: 118 TRSIDLVLHLPMRYEDETTLTPIRDLLPGGIAQTEGVVIDNE-VAYRPRRQLVVKIRDDD 176 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIE 157 GE +L F G+++ V G ++ + MVHP + D P ++ Sbjct: 177 GEQLVLRFLNFYGSQVKQMAVGQRLRVRGDVRGGFFGMEMVHPAVRVVEA-DAPLPQVLT 235 Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 VY G+S +K I AL R P+ LP IE+D L+ P++A+A I+H+P Sbjct: 236 PVYPSTAGVSQAYLRKAIENALERTPLPELLPPEIERDYLKPLGVPTLADAVRILHHPGV 295 Query: 215 AKD----FEWTSPARERLAYDELLAGQIALLLM--RKQFKKEIGIPINVE---GKIAQKI 265 D + + PA R+ ++ELLA Q++L ++ + +P + ++ Sbjct: 296 DSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAAPAMPRRTARETDALTTRL 355 Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 +PF T +Q + +I D++ + M R+LQGDVGSGKT+VA +A A A++AG QA Sbjct: 356 YAALPFRLTGAQARVVDEIAHDLTLPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQAA 415 Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +MAP ILA+QH ++ + + + V + G++ +R A+E A G A ++IGTHA+ Sbjct: 416 LMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTHAI 475 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLV 436 QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRTL Sbjct: 476 IQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAQGFQPHQLMMSATPIPRTLA 535 Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496 +T D+D+S I E P GR P+ T ++ R DEVI R++ G++ YW+CP IEE + Sbjct: 536 MTYYADLDVSTIDELPPGRTPVLTRVVGDARRDEVIARVREAALTGRQVYWVCPLIEESE 595 Query: 497 ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555 ++ VE + +L + ++HGR+S DK +VMD+F +LL+ATTVIEVG+ Sbjct: 596 TLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMDAFTRNEVQLLVATTVIEVGV 655 Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615 DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+LLY PLS RL ++ T Sbjct: 656 DVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYSGPLSIAGRERLKTMRETT 715 Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 DGF IA DL+ R GE LG +QSG A E L++ Sbjct: 716 DGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLID 757 >gi|78779148|ref|YP_397260.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str. MIT 9312] gi|78712647|gb|ABB49824.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str. MIT 9312] Length = 818 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 240/651 (36%), Positives = 369/651 (56%), Gaps = 25/651 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ---HSSFQLQKRRPYKILLNDGTG 99 DL+ Y P +++D R KI + + + T I + H S + +++D T Sbjct: 151 DLINYFPRTYLDYTNRVKIINLKPDNLYTCIVNIKRFYIHKSTKNSNLSIMNFVVSDETS 210 Query: 100 EITLLFF-----YRKTEML---KNVFFEGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQ 149 I + F +R K+++ G K+ ++GK+K + V P + N+ Sbjct: 211 SIKVTKFLLGRRFRSYSFFSSQKSLYTTGTKLAISGKVKLTEYGKTFVDPQIEILKDNND 270 Query: 150 DVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI 208 + NF I +YSL LS F K++ L PE + + L S S E+ Sbjct: 271 NFNFSGKILPLYSLAEALSNISFIKLMKSVLIYAKQYPEILNQKQLDSLSLLSKGESLIN 330 Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE-IGIPINVEGKIAQKILR 267 IH P + +++RL +DEL QI LL ++Q K I + + + + L Sbjct: 331 IHLPPTQ---QALIESKKRLVFDELFLLQIKFLLRKRQTNKHVIAKQLPQKKSLLKDFLN 387 Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 N PF TKSQ + + +I +D+S M R+LQGDVGSGKT++A+ ++ +E Q M Sbjct: 388 NFPFELTKSQVNVLNEIKKDLSNPVPMSRLLQGDVGSGKTIIAIASLLIVIEKNLQGAFM 447 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LA+QHY+ + KY + VE++TGN PQ R++ L + +G I++GTHALF+ Sbjct: 448 VPTEVLAEQHYKNLLKYLNPLLVSVELLTGNTPQKRRKEILSNLKNGLVDILVGTHALFE 507 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D + + L +V++DEQHRFGV QR +L K ++L MTATPIPRTL L+ GD+D+S+ Sbjct: 508 DKVIFNSLAMVVIDEQHRFGVTQRNRLLNKGENTNLLSMTATPIPRTLALSIYGDLDVSQ 567 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 ITE P GR PI T II + + + + ++ +++G++AY I P IE+ ++ N S + F Sbjct: 568 ITELPPGRVPITTKIISEDDLTNLFKIVEDEINKGRQAYVILPLIEDSEKMNLSSARKTF 627 Query: 508 NSLHEH--FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 L E F + + ++HG+++ +K V++SF +L++TTVIEVGIDV +A+I+II Sbjct: 628 KHLSEEVFFNNRVGLLHGKLNSQEKNEVINSFLKNEINILVSTTVIEVGIDVPNATIMII 687 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEE 623 N+E FGL+QLHQLRGRVGRG S C L+ KN RL VL+ + DGF IAE+ Sbjct: 688 YNSERFGLSQLHQLRGRVGRGSTKSFCYLVTS---DKNGLENKRLCVLQKSNDGFYIAEK 744 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 DL+ R G+ILG KQSG+P F++ + L+E AR++A +++ DPDL Sbjct: 745 DLELRGPGQILGYKQSGLPDFVLDNLPNNKFLIEKAREEAIKVVSNDPDLN 795 >gi|325688114|gb|EGD30133.1| DNA helicase RecG [Streptococcus sanguinis SK72] Length = 671 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 244/671 (36%), Positives = 383/671 (57%), Gaps = 30/671 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL+ GVG K + +K+ ET DLL Y P + D + + ++ + Sbjct: 3 LHQPLTVLPGVGPKSAEKFAKL-----GLET-LQDLLLYFPFRYEDFKSK-NVLDLEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + ++ Q + ++ GE+ L + L G I V GK Sbjct: 56 KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLAEKIEVGVNIAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184 K K + + + +D ++ VY L G+S V L K + L L Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDLL-- 166 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 L E + + LL++ S EA +H P+ D++ A R+ ++EL Q+ L +++ Sbjct: 167 LEENLPQPLLERYQLVSRVEAVRAMHFPKDLTDYK---QALRRVKFEELFYFQMQLQVLK 223 Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 ++ K G+ I+ + + +++PF T +QE ++ +ILQD+ M R+LQGDVG Sbjct: 224 RESKAVSNGLKIDWQSDAVAEKKQSLPFELTSAQERSLAEILQDLRSPGHMNRLLQGDVG 283 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA +AM A AG Q+ +M P ILA+QH++ + + ++ + ++TG M A Sbjct: 284 SGKTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAE 341 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L I GQ +I+GTHAL Q+ ++YY L LVI+DEQHRFGV+QR L +K P V Sbjct: 342 RRETLSAIEKGQVDMIVGTHALIQEGVRYYALGLVIIDEQHRFGVEQRRILREKGDNPDV 401 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T + ++ V++ LK L +G Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLGVVLDWLKKELHKGA 461 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541 +AY+I P IEE + + ++ + L +F + +A++HG+M +KE++M FK G Sbjct: 462 QAYFISPLIEESEALDLKNAIALEGELTAYFGQQAQVALLHGKMKSEEKEAIMQDFKEGR 521 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S +L+ +P + Sbjct: 522 TDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGNKQSYAVLVANPK-T 580 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 ++ R+ ++ T DGFL+AEEDLK R GEI G +QSG+P+F +A +LE ARK Sbjct: 581 ESGKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640 Query: 662 DAKHILTQDPD 672 A I T DP+ Sbjct: 641 VASQI-TADPN 650 >gi|126696154|ref|YP_001091040.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str. MIT 9301] gi|126543197|gb|ABO17439.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str. MIT 9301] Length = 818 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 240/652 (36%), Positives = 368/652 (56%), Gaps = 29/652 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ---HSSFQLQKRRPYKILLNDGTG 99 DL+ Y P +++D R KI + + + T + + H S + I++ D T Sbjct: 151 DLINYFPRTYLDYTNRVKIINLKPDNLYTCIANVKRFYIHKSKKNSNLSIMNIVVYDETS 210 Query: 100 EITLLFFYRKTEMLKNVFFE--------GRKITVTGKIKKLKNRIIMVHPHY--IFHNSQ 149 I + F+ FF G K+ ++GK+K + V P + N+ Sbjct: 211 SIKVTKFFLGRRFRSYSFFTSQKSLYTAGTKLAISGKVKLTEYGKTFVDPQIEILKDNND 270 Query: 150 DVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI 208 + NF I +YSL LS F K++ + L PE + K L S S E+ Sbjct: 271 NYNFSGKILPLYSLGEALSNMSFIKLMKKVLIYAKQYPEILNKKQLDSLSLLSKGESLIN 330 Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG---IPINVEGKIAQKI 265 IH P + +++RL +DEL QI LL +++ K + +P + + ++ Sbjct: 331 IHFPPTQ---QALIESKKRLVFDELFLLQIKFLLRKRKTNKNVTSQQLP--QKKSLLKEF 385 Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 L N PF TKSQE+ + +I +D+S M R+LQGDVGSGKT++A+ ++ +E Q Sbjct: 386 LNNFPFELTKSQENVLNEIKKDLSNPVPMSRLLQGDVGSGKTIIAIASLLLVIEKNLQGA 445 Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 M P +LA+QHY+ + KY + VE++TGN PQ R++ + +G I++GTHAL Sbjct: 446 FMVPTEVLAEQHYKNLLKYLNPLLVSVELLTGNTPQKKRKEIFSNLNNGLVDILVGTHAL 505 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445 F+D + + L +V++DEQHRFGV QR +L K ++L MTATPIPRTL L+ GD+D+ Sbjct: 506 FEDKVIFNALGMVVIDEQHRFGVTQRNRLLNKGDNTNLLSMTATPIPRTLALSIYGDLDV 565 Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 S+ITE P GR PI T II + + + + ++ +++GK+AY I P IE+ ++ N S + Sbjct: 566 SQITELPPGRVPITTKIISEDNLTNLFKIVEDEINKGKQAYVILPLIEDSEKMNLSSAKK 625 Query: 506 RFNSLHEH--FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 F L E F + ++HG++S +K V++SF +L++TTVIEVGIDV +A+I+ Sbjct: 626 TFKYLSEEVFFNKKVGLLHGKLSSQEKNEVINSFLKNEINILVSTTVIEVGIDVPNATIM 685 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY--TRLSVLKNTEDGFLIA 621 II N++ FGL+QLHQLRGRVGRG S C L+ KN RL VL+ + DGF IA Sbjct: 686 IIYNSDRFGLSQLHQLRGRVGRGSTKSFCYLVTS---DKNGLENKRLCVLQKSNDGFYIA 742 Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 E+DL+ R G+ILG +QSG+P F++ + L++ AR++A I++ DPDL Sbjct: 743 EKDLELRGPGQILGYRQSGLPDFVLDNLPNNKFLIDKAREEAIKIVSGDPDL 794 >gi|332365660|gb|EGJ43418.1| DNA helicase RecG [Streptococcus sanguinis SK1059] Length = 671 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 242/671 (36%), Positives = 386/671 (57%), Gaps = 30/671 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL+ GVG K + +K+ ET DLL Y P + D + + ++ + Sbjct: 3 LHQPLTVLPGVGPKSAEKFTKL-----GLET-LQDLLLYFPFRYEDFKSK-NVLDLEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + ++ Q + ++ GE+ L + L + G I V GK Sbjct: 56 KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184 K K + + + +D ++ VY L G+S V L K + L L Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQANLVKLIKTAFDQGLDLL-- 166 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 L E + + LL++ S EA +H P+ D++ A R+ ++EL Q+ L +++ Sbjct: 167 LEENLPQSLLERYQLVSRVEAVRAMHFPKDLADYK---QALRRVKFEELFYFQMQLQVLK 223 Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 ++ K G+ I+ + + +++PF T +QE ++ +ILQD+ M R+LQGDVG Sbjct: 224 RETKAVSNGLKIDWQSDAVAEKKQSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVG 283 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA +AM A AG Q+ +M P ILA+QH++ + + ++ + ++TG M A Sbjct: 284 SGKTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAE 341 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L I +GQ +I+GTHAL Q++++Y+ L LVI+DEQHRFGV+QR L +K P V Sbjct: 342 RRETLAAIENGQVDMIVGTHALIQEAVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDV 401 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T + +++ V++ LK L +G Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLKKELHKGA 461 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541 + Y+I P IEE + + ++ + L +F + +A++HG+M +KE++M FK G Sbjct: 462 QVYFISPLIEESEALDLKNAIALEEELTAYFGQQAQVALLHGKMKSEEKEAIMQDFKEGR 521 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S +L+ +P + Sbjct: 522 TDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-T 580 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 ++ R+ ++ T DGFL+AEEDLK R GEI G +QSG+P+F +A +LE ARK Sbjct: 581 ESGKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640 Query: 662 DAKHILTQDPD 672 A I T DP+ Sbjct: 641 VASQI-TADPN 650 >gi|325268106|ref|ZP_08134752.1| DNA helicase RecG [Kingella denitrificans ATCC 33394] gi|324980491|gb|EGC16157.1| DNA helicase RecG [Kingella denitrificans ATCC 33394] Length = 681 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 231/645 (35%), Positives = 362/645 (56%), Gaps = 20/645 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DL + P + D IS + + G + H Q + R+ + G I Sbjct: 29 DLALHLPLRYEDETKIVPISAAPLGEVCQVEGEVL-HQEVQFKPRKQLVAQIKGDDGAIL 87 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162 L F + G+++ G+IK+ R M+HP Q + L +Y Sbjct: 88 NLRFIHFYPSHQKQLAPGQRVRALGEIKRGYERCEMIHPKIKSPEKQALATSLT-PIYPT 146 Query: 163 PTGLSVDLFKKIIVEALSRL---PVLPEWIEKDLLQKKSFPSIAEAFNIIHNP----RKA 215 GL+ + +K + AL+++ +LP + DL P++AE+ +H P Sbjct: 147 TNGLTQPVLRKAVQAALAQVDMHEILPARVLDDL----RLPTLAESLRTLHYPPPHLSAG 202 Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275 + T P +RL +DELLA Q+++ L R++ + +P++ + ++ + +L N+PF T Sbjct: 203 QLGSGTLPEWQRLKFDELLAQQLSMRLARQRRQHGQAMPLSGDERLCRALLGNLPFRLTA 262 Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAPIGIL 333 +QE +I D++Q M R+LQGDVGSGKT+VA ++ A+E+ Q IMAP IL Sbjct: 263 AQERVCSEIRADLAQSTPMHRLLQGDVGSGKTIVAALSALTALESAQEVQVAIMAPTEIL 322 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QH+ +++ + + V ++G++ + + +A +A G+ + +GTHALFQD + + Sbjct: 323 AEQHFMKFRQWLEPLGLTVAWLSGSLKKKEKEQAKAALADGRIRVAVGTHALFQDDVAFR 382 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 +L LVIVDEQHRFGV QRL L K H L+M+ATPIPRTL ++ D+D+S I E P Sbjct: 383 QLGLVIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRTLAMSFYADLDVSSIDELPP 442 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 R PIKT+++ R +V + +G++ YW+CP IEE + ++ + L Sbjct: 443 NRTPIKTLLVNQVRRHDVEGFVLNTCQKGQQVYWVCPLIEESEVLQLQTATDTLARLQAA 502 Query: 514 FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 S+ ++HGRM +K +VM F G +L+ATTVIEVG+DV +AS+++IE+AE G Sbjct: 503 LPGLSVGLVHGRMKAAEKAAVMAEFIAGRLHVLVATTVIEVGVDVPNASLMVIEHAERMG 562 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 LAQLHQLRGRVGRG SSC+L++ PLS + RL V++ DGF IA++DL+ R GE Sbjct: 563 LAQLHQLRGRVGRGAAASSCVLMFAEPLSALARARLKVVREHTDGFEIAKQDLEIRGPGE 622 Query: 633 ILGIKQSGMP--KFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 LG +QSG+P +F Q +LH LLE AR+ A ++ +P++ + Sbjct: 623 FLGARQSGVPMLRFADLQTDLH--LLEAARRVAADLMADEPEIVA 665 >gi|332972878|gb|EGK10821.1| DNA helicase RecG [Kingella kingae ATCC 23330] Length = 680 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 224/603 (37%), Positives = 345/603 (57%), Gaps = 8/603 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H Q + R+ + + D +G + L F + +G+ + G+IK+ M Sbjct: 64 HQEVQFKPRKQLIVQIQDESGSVLNLRFIHFYPNHQKQLAQGQTVRALGEIKRGYYGDEM 123 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP D+ L+ +Y GL+ +K++ AL + L E + + L+K Sbjct: 124 IHPKIKSPEKSDLA-QLLTPIYPTTNGLNQPTLRKVVQTALETVD-LSEILPDNYLKKYQ 181 Query: 199 FPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 +A++ +HNP + P RL +DELLA Q+++ L R++ + Sbjct: 182 LIPLAQSLRTLHNPPPDWSLSMLTNGALPEWRRLKFDELLAQQLSMRLARQRRRAGNARA 241 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + GK+++K+L +PF T++Q+ +I +D+++ M R+LQGDVGSGKT+VA ++ Sbjct: 242 LVSTGKLSEKLLSYLPFDLTRAQKKVCAEIREDLAKPVPMHRLLQGDVGSGKTIVAALSA 301 Query: 315 AAAVEAGG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373 A+E+ G Q IMAP ILA+QH+ K++ + I V ++G++ + + +A +A Sbjct: 302 LMALESDGVQVAIMAPTEILAEQHFIKFKQWFEPLGISVAWLSGSLKKKEKDQAKAALAD 361 Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433 G+ + +GTHALFQD + ++ L LVIVDEQHRFGV QRL L K + H L+M+ATPIPR Sbjct: 362 GRIRVAVGTHALFQDDVLFHDLALVIVDEQHRFGVAQRLALKNKGSDVHQLMMSATPIPR 421 Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493 TL ++ D+D+S I E P R PIKT ++ R EV + +G++AYW+CP IE Sbjct: 422 TLAMSFFADLDVSSIDELPPNRTPIKTKLVNNLRRSEVEGFVLNTCQKGQQAYWVCPLIE 481 Query: 494 EKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552 E + ++V + L I ++HGRM +K +VM F +G+ +L+ATTVIE Sbjct: 482 ESEVLQLQTVTDTLAELQAALPQLKIGLVHGRMKAAEKAAVMAEFISGSLNVLVATTVIE 541 Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612 VG+DV +AS+++IE+AE GLAQLHQLRGRVGRG S+C+LL+ PL + S RL V+ Sbjct: 542 VGVDVPNASLMVIEHAERMGLAQLHQLRGRVGRGAAASTCVLLFAEPLGQISKARLKVIY 601 Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 DGF IA +DL+ R GE LG +QSG P A + LLE AR+ A ++ PD Sbjct: 602 ENTDGFEIARQDLEIRGPGEFLGARQSGAPMLRFADLQEDLPLLEAAREVAADLVAHRPD 661 Query: 673 LTS 675 + + Sbjct: 662 VVA 664 >gi|324990137|gb|EGC22075.1| DNA helicase RecG [Streptococcus sanguinis SK353] Length = 671 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 242/671 (36%), Positives = 386/671 (57%), Gaps = 30/671 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL+ GVG K + +K+ ET DLL Y P + D + + ++ + Sbjct: 3 LHQPLTVLPGVGPKSAEKFAKL-----GLET-LQDLLLYFPFRYEDFKSK-NVLDLEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + ++ Q + ++ GE+ L + L + G I V GK Sbjct: 56 KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184 K K + + + +D ++ VY L G+S V L K + L L Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDLL-- 166 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 L E + + LL++ S EA +H P+ D++ A R+ ++EL Q+ L +++ Sbjct: 167 LEENLPQPLLERYQLVSRVEAVRAMHFPKDLADYK---QALRRVKFEELFYFQMQLQVLK 223 Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 ++ K G+ I+ + + +++PF T +QE ++ +ILQD+ M R+LQGDVG Sbjct: 224 RETKAVSNGLKIDWQSDAVAEKKKSLPFELTPAQERSLTEILQDLQSSGHMNRLLQGDVG 283 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA +AM A AG Q+ +M P ILA+QH++ + + ++ + ++TG M A Sbjct: 284 SGKTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAE 341 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L I +GQ +I+GTHAL Q++++Y+ L LVI+DEQHRFGV+QR L +K P V Sbjct: 342 RRETLAAIENGQVDMIVGTHALIQEAVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDV 401 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T + +++ V++ LK L +G Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLKKELHKGA 461 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541 + Y+I P IEE + + ++ + L +F + +A++HG+M +KE++M FK G Sbjct: 462 QVYFISPLIEESEALDLKNAIALEEELTAYFGRQTQVALLHGKMKSEEKEAIMQDFKEGR 521 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S +L+ +P + Sbjct: 522 TDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGNKQSYAVLVANPK-T 580 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 ++ R+ ++ T DGFL+AEEDLK R GEI G +QSG+P+F +A +LE ARK Sbjct: 581 ESGKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640 Query: 662 DAKHILTQDPD 672 A I T DP+ Sbjct: 641 VASQI-TADPN 650 >gi|167759036|ref|ZP_02431163.1| hypothetical protein CLOSCI_01383 [Clostridium scindens ATCC 35704] gi|167663443|gb|EDS07573.1| hypothetical protein CLOSCI_01383 [Clostridium scindens ATCC 35704] Length = 676 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 239/667 (35%), Positives = 370/667 (55%), Gaps = 24/667 (3%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP-KISEISEERIVT 71 + +G+G+K K+ + DL+ Y+P + D + P ISE+ E ++ T Sbjct: 7 IKELKGIGEKTQKLFEKV------GVSTVGDLIRYYPRGY-DVYEDPVPISEVEEGKVQT 59 Query: 72 ITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 + G I Q+ R ++ + D TG I ++F + L+N G KI + G+ Sbjct: 60 VAGAI--FGRVQVSGNRNMQVTTIHVKDLTGTIKAVWF--RMPFLRNTLAGGGKIILRGR 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187 + K + M HP + + + ++ VY L GLS ++ K + +ALS+L + E Sbjct: 116 VTSRKGGLAMEHPEIFYPAGKYEEKIHTLQPVYGLTAGLSNNVVAKAMHQALSQLDLTRE 175 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247 + +L K A IH P +D E ARERL ++E L +++ M+ + Sbjct: 176 TLPDELRLKYGLAEYNYAIRGIHFP---EDKEVFYHARERLVFEEFLEFILSIRKMKDKN 232 Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 ++ I +++ +P+ TK+Q+ +I DM+ M R++QGDVGSGKT Sbjct: 233 ERIENEYIVQRKPEVDELIGRLPYELTKAQKKVWDEIAHDMASDTAMSRLVQGDVGSGKT 292 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRR 365 +VA++A+ + G Q +MAP +LA+QHY+ I + + +I VE++TG+M +R Sbjct: 293 IVAVLALISVALNGYQGAMMAPTEVLARQHYDSITRLLEEYGIKIKVELLTGSMTAKEKR 352 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 +A +RI G A IIIGTHAL QD + Y L LV+ DEQHRFGV+QR +K PHVL+ Sbjct: 353 RAYDRIECGYARIIIGTHALIQDRVYYDCLALVVTDEQHRFGVKQREAFARKGGMPHVLV 412 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 M+ATPIPRTL + GD+DIS I E PA R PIK ++ +K + EG++ Sbjct: 413 MSATPIPRTLAIILYGDLDISVIDELPANRLPIKNCVVETGYRKTAYAFMKKQVGEGRQC 472 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCK 543 Y ICP +EE ++ +V++ L E I + +HGRM +K+ +M+ F + Sbjct: 473 YVICPMVEESEQLEVENVLDYAAMLQEEMGKGIVVSCLHGRMRQAEKDDIMERFGRCEIQ 532 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVGIDV +A++++IENAE FGLAQLHQLRGRVGRG+ S CI + +K Sbjct: 533 ILVSTTVIEVGIDVPNATVMMIENAERFGLAQLHQLRGRVGRGKHQSYCIFMSGSK-AKE 591 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 + RL++L + DGF IA EDL+ R G++ GI+QSGM F + +L++A + A Sbjct: 592 TRERLNILNESNDGFKIASEDLRLRGPGDLFGIRQSGMMDFKLGDVFQDAKVLQMANEAA 651 Query: 664 KHILTQD 670 +L + Sbjct: 652 DLLLNDE 658 >gi|261379837|ref|ZP_05984410.1| ATP-dependent DNA helicase RecG [Neisseria subflava NJ9703] gi|284797526|gb|EFC52873.1| ATP-dependent DNA helicase RecG [Neisseria subflava NJ9703] Length = 729 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 229/600 (38%), Positives = 343/600 (57%), Gaps = 7/600 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H + R+ + + DG+G + L F + G++I G+IK + M Sbjct: 114 HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASNQKQMAVGKRIRAVGEIKHGFHGDEM 173 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP S + L +Y GL+ ++II AL P L + + LL + Sbjct: 174 IHPKIRDAESSGLAESLT-PIYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLSRLK 231 Query: 199 FPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 P +AE+ ++H+P + S PA +RL +DELLA Q+++ L R++ Sbjct: 232 LPHLAESLRLLHSPPPSFTIHQLSDGALPAWQRLKFDELLAQQLSMRLARQKRVSGSATA 291 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + +G + Q + +PF+ T +QE + +I +DM+Q + M R+LQGDVGSGKT+VA ++ Sbjct: 292 LGGDGILTQALRHALPFALTDAQERVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSA 351 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A+E+G Q +MAP ILA+QH+ K++ + + V ++G+ + + +A ++A G Sbjct: 352 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADG 411 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 I +GTHALF D +++ L LVIVDEQHRFGV QRL L K H L+M+ATPIPRT Sbjct: 412 TVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLALKSKGRDVHQLMMSATPIPRT 471 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I E P GR PIKT ++ R EV + + +G++AYW+CP IEE Sbjct: 472 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNIRRAEVEGFVLNICRKGQQAYWVCPLIEE 531 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ E L +I ++HGRM +K VM F G +L+ATTVIEV Sbjct: 532 SETLQLQTATETLAQLQAALPELNIGLVHGRMKAAEKAEVMAQFAAGHLNVLVATTVIEV 591 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +A++++IE+AE GLAQLHQLRGRVGRG S C+LL+ PLS+ + RL V+ Sbjct: 592 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYE 651 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA +DL R GE LG +QSG+P A E LLE AR+ A ++ Q+P++ Sbjct: 652 HTDGFEIAHQDLNIRGPGEFLGARQSGVPMLRFANLEEDLHLLEQAREIAPMLIEQNPEI 711 >gi|299144503|ref|ZP_07037582.1| ATP-dependent DNA helicase RecG [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517591|gb|EFI41331.1| ATP-dependent DNA helicase RecG [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 680 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 238/645 (36%), Positives = 371/645 (57%), Gaps = 15/645 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISE-ISEERIVTITGYISQHSSFQLQKRRPYKILL-NDGTGE 100 DLL Y P + D+ K+ E I +E+ ++S + +++K L D +G+ Sbjct: 31 DLLTYFPRDYDDQSNFKKLYEAIIDEKATFRVKFLSVLENRKIRKNLFITTFLAEDSSGQ 90 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-FPLIEAV 159 + FF K +KN + V+GK+ + K ++ + +P F + D N I + Sbjct: 91 AKISFFNMK--FIKNQISLNDEYLVSGKVNRFKGQVQITNP--TFEKASDANRVGTIYPI 146 Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 Y L G+ + ++ +A+ + + E + + L++K + EA IH P K F Sbjct: 147 YPLKKGVFNNEIVNLVHQAVE-MNLFEENLPQYLVKKYNLMDKNEAIKNIHMPYDKKSF- 204 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 AR+RL ++ELL Q+++ +++ Q + IP ++ +I K + N+PF T Q+ Sbjct: 205 --IRARQRLVFEELLIFQLSIFMLKNQDEIVKVIPYKIDDRIY-KFIDNLPFLLTDGQKR 261 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 + +I +DM NRM R+LQGDVGSGKT++A+I+M A G Q+ IMAP ILA+QH E Sbjct: 262 VVDEIFEDMKSGNRMNRLLQGDVGSGKTIIAIISMYLAYLNGYQSTIMAPTEILAKQHLE 321 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 + + + VE++ G+ + +R + L I +G+ I+IGTHAL +D++++ L L I Sbjct: 322 SFRNILEPLGVKVELLVGSTTKKNRDRILTGIYNGEIDILIGTHALIEDTVEFKNLGLNI 381 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 DEQHRFGV+QR L K H L+MTATPIPRTL L GD+ IS I P RK I Sbjct: 382 TDEQHRFGVRQRQTLNTKEKTAHTLVMTATPIPRTLALILYGDLSISTIDTLPPNRKKID 441 Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI- 518 T+ I + ++ + ++ + +G++AY ICP IEE + + S E FN L +++ S I Sbjct: 442 TIAINESMLNRGLSFIREQVKKGRQAYIICPLIEESENFDLDSATEVFNDLRKNYFSDIR 501 Query: 519 -AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 A++HG+MS +K SVM FK+G ++++TTVIEVG++V +A++I+I NAE FGLAQLH Sbjct: 502 VALLHGKMSSDEKNSVMQDFKDGCTDIIVSTTVIEVGVNVPNATVILIYNAERFGLAQLH 561 Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637 QLRGRVGR S CI LY+ SK S+ R+ V+ + DGF IA +DL R G+I G + Sbjct: 562 QLRGRVGRSVHKSYCI-LYNSSNSKVSWQRMKVMTESTDGFYIANKDLSIRGSGDIFGTR 620 Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682 QSG+ + +A +L+ A +A+ IL D L + ++R Sbjct: 621 QSGIMELKLADLVRDTEILKYATIEAREILKDDRKLIENKNSNLR 665 >gi|311029989|ref|ZP_07708079.1| ATP-dependent DNA helicase RecG [Bacillus sp. m3-13] Length = 682 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 236/635 (37%), Positives = 362/635 (57%), Gaps = 19/635 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLL + P + D R ISE+ E +T+ G + S ++ ++ G Sbjct: 33 DLLMHFPYRYEDYRLR-DISEVKHEEKITVEGKVHGEPSLMYFGKKKSRLTFRFYVGRFL 91 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYS 161 + KN IT+TGK + + I ++ H+ F +V E VYS Sbjct: 92 VKAVCFNRPYYKNKLSINDTITITGKWDQHRQTITVMEIHFGPFMKESEV-----EPVYS 146 Query: 162 LPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220 + ++V +K I AL L + +LQK PS ++ +HNP E Sbjct: 147 VKGNITVKQMRKFIGNALQTYGSALESALPVSILQKYKLPSKGDSVRALHNPVNQ---ET 203 Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQE 278 AR Y+E L Q+ + +RK +K+E G+ ++ + +PF T +Q Sbjct: 204 LKHARRYFVYEEFLLFQLKIQALRK-YKREQTEGLVHEFPKSKLERFIATLPFPLTGAQN 262 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +IL DM+ RM R+LQGDVGSGKT+VA I++ A +G Q +M P ILA+QH Sbjct: 263 RVLGEILGDMTSPYRMNRLLQGDVGSGKTVVAAISLYGAHLSGYQGALMVPTEILAEQHA 322 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + T++ +E++T ++ RR+ LER+A+G+ I++GTHAL Q + + L LV Sbjct: 323 HSLTSLFSGTEVNIELLTSSVKGKRRRELLERLANGKIDILVGTHALIQGEVNFKSLGLV 382 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I DEQHRFGV+QR L +K + P VL MTATPIPRTL +T+ G++D+S I E PAGRK I Sbjct: 383 ITDEQHRFGVEQRRVLREKGSNPDVLFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKAI 442 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-- 516 +T ID V+ ++ L +G++AY ICP IEE ++ + ++ ++ + L ++ Sbjct: 443 ETYWAKHQMIDRVLGFVEKELQKGRQAYVICPLIEESEKLDVQNAIDVHDMLTHYYRGKW 502 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 I ++HGR+S +KE VM++F +LL++TTV+EVG++V +A++++I +AE FGL+QL Sbjct: 503 KIGLMHGRLSSDEKEKVMEAFSENEVQLLVSTTVVEVGVNVPNATMMVIYDAERFGLSQL 562 Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636 HQLRGRVGRG E S CILL P S+ R+ ++ T DGF+++E+DL+ R G+ G Sbjct: 563 HQLRGRVGRGSEQSYCILLADPK-SEVGKERMKIMTETNDGFVLSEKDLELRGPGDFFGR 621 Query: 637 KQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQD 670 KQSG+P+F +A +HD LE+AR+DA +L D Sbjct: 622 KQSGVPEFKVADM-VHDYRALEVARQDAHDLLYSD 655 >gi|116074689|ref|ZP_01471950.1| putative DNA helicase [Synechococcus sp. RS9916] gi|116067911|gb|EAU73664.1| putative DNA helicase [Synechococcus sp. RS9916] Length = 844 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 238/690 (34%), Positives = 377/690 (54%), Gaps = 35/690 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L APLS +G+G K + L+ + DLL Y+P ++D +I + Sbjct: 145 LDAPLSRVKGIGPKLAERLA------SLGLLLVRDLLLYYPRDYVDYSAMRRIEALEPGT 198 Query: 69 IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFE------ 119 TI + + F + IL + D TG + + F Sbjct: 199 TATIVATVRRCHGFTSPRNPNLSILELQVQDPTGRLKVTRFLAGKRFSSPAALHTQTRQY 258 Query: 120 --GRKITVTGKIKKLKNRIIMVHP--HYIFHNSQDVNFPLIE---AVYSLPTGLSVDLFK 172 G + ++G +K + P + S V P I VY+L GL+ D + Sbjct: 259 PVGATVAISGLVKSGPYGLSFQDPLIEVLESASAPVRSPQIGRLLPVYALTEGLAADRLR 318 Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232 K++ L PE + D S A + IH P K+ + AR RL +DE Sbjct: 319 KLVALVLPAAQHWPEPLSADRRDALELMSRPLALDQIHRP---KNRDALQRARRRLVFDE 375 Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGK---IAQKILRNIPFSPTKSQESAIKDILQDMS 289 L Q+ L+ R ++ + G+ + + L +PF T +Q+ + +I D++ Sbjct: 376 FLLLQLGLMQRRAAHRQRQAPCLEGVGQRDGLVGRFLSLLPFDLTAAQQRVLAEIEVDLA 435 Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349 + M R++QGDVGSGKT+VA+ A+ AV+AG Q +MAP +LA+QHY + ++ Sbjct: 436 KAEPMARLVQGDVGSGKTVVAVAALLNAVDAGWQGALMAPTEVLAEQHYRSLCQWLTPLH 495 Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409 I VE++TG+ + +RR+ L +A+G I++GTHAL +D + + +L LV+VDEQHRFGV+ Sbjct: 496 ISVELLTGSTSRPNRRRMLTDLANGTLRILVGTHALIEDPVDFSRLGLVVVDEQHRFGVR 555 Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469 QR +L K PH+L MTATPIPRTL L+ GD+D+S+I E P GR PI+T I + D Sbjct: 556 QRNRLLSKGLQPHLLTMTATPIPRTLALSLHGDLDVSQIDELPPGRTPIQTRQISGSDRD 615 Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSD 527 + + ++ + G++AY + P +EE ++ + RS V+ L E S+ ++HGR++ Sbjct: 616 QAYDLIREQVQAGQRAYVVLPLVEESEKMDLRSAVDVHRQLVEEVFPDCSVGLLHGRLNS 675 Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587 +K++V+ +F G C++L++TTV+EVG+DV +AS+++I++A+ FGLAQLHQLRGRVGRG Sbjct: 676 AEKQAVIQAFARGDCQVLVSTTVVEVGVDVPEASVMVIDHADRFGLAQLHQLRGRVGRGA 735 Query: 588 EISSCILLYHP--PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645 S C+L+ PL++ RL VL + DGF IAE DL+ R G++LG +QSG+P Sbjct: 736 AASHCLLVNDSRNPLARQ---RLDVLVRSTDGFEIAEMDLRLRGPGQVLGTRQSGLPDLA 792 Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDLTS 675 +A ++L+ AR++A ++ +DP L Sbjct: 793 LASLADDGAVLDDAREEASRLIQEDPGLNG 822 >gi|298368995|ref|ZP_06980313.1| ATP-dependent DNA helicase RecG [Neisseria sp. oral taxon 014 str. F0314] gi|298282998|gb|EFI24485.1| ATP-dependent DNA helicase RecG [Neisseria sp. oral taxon 014 str. F0314] Length = 680 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 230/600 (38%), Positives = 343/600 (57%), Gaps = 7/600 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H + R+ + + D +G + L F + G++I G+IK + M Sbjct: 65 HQEVTFKPRKQLIVQIADDSGSVLFLRFIHFYASNQKQMAVGKRIRAVGEIKHGFHGDEM 124 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP S + L VY GL+ ++II AL P L + + LL + Sbjct: 125 IHPKIRDAESSGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLDRLK 182 Query: 199 FPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 P +AE+ ++H+P + S PA +RL +DELLA Q+++ L R++ Sbjct: 183 LPHLAESLRLLHSPPPSFTIRQLSDGALPAWQRLKFDELLAQQLSMRLARQKRVSGTAAA 242 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + +G + Q + +PF+ T +QE + +I +DM+Q + M R+LQGDVGSGKT+VA ++ Sbjct: 243 LGGDGTMTQALRHALPFALTDAQERVVSEIRRDMAQTHPMHRLLQGDVGSGKTIVAALSA 302 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A+E+G QA +MAP ILA+QH+ K++ + + V ++G+ + + +A ++A G Sbjct: 303 LTAIESGAQAAVMAPTEILAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADG 362 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 I +GTHALF D +++ L LVIVDEQHRFGV QRL L K H L+M+ATPIPRT Sbjct: 363 TVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLALKNKGRDVHQLMMSATPIPRT 422 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I E P GR PIKT ++ R EV + + +G++AYW+CP IEE Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRVEVEGFVLNICRKGQQAYWVCPLIEE 482 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ E L +I ++HGRM +K VM F G +L+ATTVIEV Sbjct: 483 SETLQLQTATETLEQLQAALPELNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEV 542 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +A++++IE+AE GLAQLHQLRGRVGRG S C+LL+ PLS+ + RL V+ Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYE 602 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA +DL R GE LG +QSG+P A E LLE AR+ A ++ Q+P++ Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEEDLHLLEQAREIAPMLIEQNPEI 662 >gi|146296794|ref|YP_001180565.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410370|gb|ABP67374.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 679 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 241/633 (38%), Positives = 369/633 (58%), Gaps = 19/633 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS-QHSSFQLQKRRPYKILLNDGTGEI 101 DLL++ P ++D KI E+S+ I + G + + + + + + KI + DGTG + Sbjct: 32 DLLWHIPRKYLDYSKLKKIKELSDGEIESFVGTVCGKPTEIETKSVKIIKIPVEDGTGVV 91 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161 T ++F + + +K+V EG +GKI++ I + +P + ++ ++ I VY+ Sbjct: 92 TTVWFNQ--DYIKSVLKEGEVFCFSGKIERRGFYIEVKNPEFEKYDQNLLHTGRIVPVYN 149 Query: 162 LPTGLSVDLFKKIIVEALSRLP-----VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216 GLS + + I+ L ++ V+P +I QK I A IH P Sbjct: 150 STEGLSQKVMRNIVNNLLEQVEGQLGDVIPPYIR----QKYHLSEINFAMRNIHFPDNML 205 Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276 S AR RL ++E Q++LLL+++ +K G+ + + ++ R +PF T + Sbjct: 206 SL---SLARRRLVFEEFYLLQLSLLLLKENIEKNEGVKVQNAKENIEEFKRLLPFELTNA 262 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q+ + +I D+ +M R++QGDVG GKT+VAL A A ++ G Q +MAP +LA Q Sbjct: 263 QKRVLDEIADDLESSKQMNRLIQGDVGCGKTVVALAAAYATIKGGYQVALMAPTEVLAIQ 322 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 HY KKY +N I V ++ G+ P+ + L+ I +G H++IGTHAL Q+ +++ L Sbjct: 323 HYNESKKYFKNG-INVRLLIGSTPKKEKEVILKEIEYGLCHMVIGTHALIQEDVKFKNLG 381 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 L I DEQHRFGV QR++LT+K +P++L+MTATPIPRTL L GD+DIS I E P GRK Sbjct: 382 LAITDEQHRFGVIQRVELTKKGNSPNILVMTATPIPRTLSLVLYGDLDISIIDEMPPGRK 441 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-- 514 I T + + V +K L EG++ YWICP IEE + N +S VE SL E F Sbjct: 442 KILTYAVDESFRQRVYNFIKKQLDEGRQVYWICPLIEESETLNAKSAVEFAKSLKEGFFK 501 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 +I +HG++S +++ V+ FK G +L++TTV+EVGI+V +A++++IENAE FGLA Sbjct: 502 DYNIGCLHGKLSSKERDKVLQEFKEGLIHILVSTTVVEVGINVPNATVMVIENAERFGLA 561 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRGE S CI L++ S+ S R+ + +++GF IAE DLK R G++ Sbjct: 562 QLHQLRGRVGRGEHQSYCI-LFNQSDSEISKKRMVAITKSQNGFEIAEMDLKLRGPGDLF 620 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 G KQ G+ F IA +L+ ARK A+ + Sbjct: 621 GTKQHGLMNFKIADIVSDMEILKEARKAAEETI 653 >gi|39996428|ref|NP_952379.1| ATP-dependent DNA helicase RecG [Geobacter sulfurreducens PCA] gi|39983308|gb|AAR34702.1| ATP-dependent DNA helicase RecG [Geobacter sulfurreducens PCA] Length = 714 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 240/698 (34%), Positives = 384/698 (55%), Gaps = 36/698 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 L P+ +GVG K + L++ I+ +A L+ P+ + DR ++ + Sbjct: 12 LETPMQFIKGVGPKMAEILARKGIVTVEDA--------LYLLPNRYEDRRQVVPMNRLRP 63 Query: 67 ERIVTITGYISQHSSFQLQK-RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 G + + RR ++++ D +G ++ +F ++ + GR+ Sbjct: 64 GETCVFAGEVVSADVVTTKGGRRFFEVMARDASGVMSFKWFNYHAAFMRKAWQPGRRGIF 123 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQD----------VNFPLIEAVYSLPTGLSVDLFKKII 175 TG++ + + + HP + + V F + VY L GL+ +K++ Sbjct: 124 TGQVTQYGLQREVHHPDVDWLAEGETVEAAMARDPVGFGRLVPVYPLTEGLNQKALRKVM 183 Query: 176 VEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAY 230 E + R P + + ++++++ +AEA +H P D E PA L + Sbjct: 184 KEVVDRFAPCVESALPARVIRERALLPLAEALGAVHFPAADADPRALEEGRDPAHRTLVF 243 Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290 DE ++ L L R+ E GI +V + +L+ +PF+ T++Q + +I DM Sbjct: 244 DEFFFLELGLALKRRGVTLEPGIAFSVNHTYTKPLLKLLPFALTEAQRRVLAEIKADMMA 303 Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350 + M R++QGDVG GKTLVAL+A AVE G Q IMAP ILA+QHY I ++ + + Sbjct: 304 PHPMHRLVQGDVGCGKTLVALLAALVAVENGYQVAIMAPTEILAEQHYLNIHRWCEQLGV 363 Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410 V ++T ++ + ALER+A G+ I+IGTHA+ QD +++++L L IVDEQHRFGV Q Sbjct: 364 TVALLTSSLKGKAKAGALERVARGEVQIVIGTHAVIQDKVEFHRLGLGIVDEQHRFGVLQ 423 Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470 R L +K P +L+MTATPIPRTL +T GD+ +S I E P GR P++T I +R + Sbjct: 424 RGLLRKKGENPDILVMTATPIPRTLAMTVFGDLSLSVIDELPPGRTPVETKICTDSRRRQ 483 Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI------AIIHGR 524 V ++ ++ G +AY I P +EE ++S ++ + + EH + + ++HGR Sbjct: 484 VYGIIRDEVAAGHQAYVIYPLVEESEKSELKAATQ----MAEHLANDVFPDLRLGVLHGR 539 Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584 M +KE+VM SFK +L++TTVIEVGIDV +A++++IE+AE FGL+QLHQLRGRVG Sbjct: 540 MKPEEKEAVMRSFKGREIDILVSTTVIEVGIDVPNATVMVIEHAERFGLSQLHQLRGRVG 599 Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644 RG S CIL+ LS + RL V+++T DGF IAE DL+ R G+ LG +Q+G+P F Sbjct: 600 RGSATSRCILMASDRLSDDGVKRLRVMESTTDGFRIAEADLEIRGPGDFLGTRQAGIPDF 659 Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682 +A +LE AR +A + +DP+L + + +R Sbjct: 660 RVANILRDGRILEEARAEAFDLAERDPELRAPGHEPLR 697 >gi|121533683|ref|ZP_01665510.1| ATP-dependent DNA helicase RecG [Thermosinus carboxydivorans Nor1] gi|121307674|gb|EAX48589.1| ATP-dependent DNA helicase RecG [Thermosinus carboxydivorans Nor1] Length = 684 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 241/696 (34%), Positives = 389/696 (55%), Gaps = 40/696 (5%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75 +GVG + +L+K+ N DLL ++P + DR Y I + + + T Sbjct: 12 LKGVGPARAAYLAKL------NIFSIEDLLTHYPRRYEDRSYFKPIKLLEDNEVQTFRAT 65 Query: 76 ISQHSSFQLQKRRP------YKILLNDGTGEITLLFF---YRKTEMLKNVFFEGRKITVT 126 + +++R+P K+ + D + L++F YRKT + G ++ V Sbjct: 66 V-----VAVEERKPRRGLTLTKVTVRDDSAVAQLVWFNQSYRKTR-----YRPGMELIVY 115 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184 GK ++ N I +V+P + + +N I VY ++ + ++++ +AL+ Sbjct: 116 GKAERRFNTIQLVNPEVEIVDEVEELLNVGRIVPVYPATENINQRVLRQLVRQALTDCHP 175 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 +PE + +++ + + +A IH P D + + AR RL ++EL Q LL ++ Sbjct: 176 IPEILPGNIICRYNLIGRDQALESIHFP---PDKDALTQARRRLVFEELFFLQYGLLYLK 232 Query: 245 KQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 + K E GI +GK+++++L +PF+ T Q+ A+++I DM M R+LQGDVG Sbjct: 233 NRNKHEFQGIKHAQDGKLSKEVLARLPFTLTTDQQVALQEIKADMEDTRPMQRLLQGDVG 292 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT++A +A+ VE G Q +MAP ILA+QH+ + + N I + ++TG + + Sbjct: 293 SGKTVIAALALVKTVENGYQGAMMAPTEILAEQHFHTLSRLLANLGIRLALLTGRLTKRE 352 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 R + L + +G I+IGTHAL QD + + L LV+ DEQHRFGV+QR L K P V Sbjct: 353 RDQVLANLRNGLVDIVIGTHALLQDDVHFKHLGLVVTDEQHRFGVRQRALLQAKGKMPDV 412 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRT+ LT GD+D+S I P GRKPIKT + V + ++ G+ Sbjct: 413 LVMTATPIPRTMALTVYGDLDVSVIRTLPPGRKPIKTYSVTGEMRGRVYNFVAREVAAGR 472 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGT 541 +AY +CP +EE + R+ V+ + L + + ++HG+M +K++VM++F +G Sbjct: 473 QAYVVCPLVEESDKLEARAAVQMYEQLARTYFKGLTCGLVHGKMKSQEKDAVMNAFYSGK 532 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++LIATTVIEVG++V +A++++IE A+ FGLAQLHQLRGR+GRGE S CIL+ S Sbjct: 533 IQVLIATTVIEVGVNVPNATVMVIEGADRFGLAQLHQLRGRIGRGEHQSFCILISDSK-S 591 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 + S RL+++ T+DGF++AE+DL R G+ G +Q GMP IA +L AR+ Sbjct: 592 EESKERLAIMTTTQDGFVLAEKDLLLRGPGQFFGTRQHGMPDLKIADIVRDLDILLEARQ 651 Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFI 697 A+ +T+ + QS+ L ++ EAF I Sbjct: 652 AAQQAVTRPEIFNEL--QSVLKL----RFGEAFNMI 681 >gi|300814539|ref|ZP_07094795.1| ATP-dependent DNA helicase RecG [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511366|gb|EFK38610.1| ATP-dependent DNA helicase RecG [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 674 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 234/646 (36%), Positives = 367/646 (56%), Gaps = 33/646 (5%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK---------RRPYKI- 92 DLL+++P + D K+SE G I + ++F+ + RR I Sbjct: 31 DLLYFYPRRYEDSSKILKLSE----------GIIGEKATFRCRILSLLDNRNIRRGLSIT 80 Query: 93 --LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD 150 L+ D + E L+FF +KN G + GK ++ + RI + P I Sbjct: 81 SFLIEDDSAEAKLIFF--NNRFIKNTIDFGETYLIYGKYERFRGRIQLTSPE-IEKVDNI 137 Query: 151 VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIH 210 N I +Y+ GL+ + +I + + + + E I DL++K S A IH Sbjct: 138 RNLGRIRGIYNQTKGLTNNNIDYLIDQVIDK-NLFEECIPNDLIKKYSLIDKNRAIKNIH 196 Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270 P K + + +++RL Y+ELL ++++L M+ + GI N+ KI + + N+P Sbjct: 197 RPENRKSY---ALSKQRLVYEELLFFELSILSMQNKNNSSHGIKFNIPNKIYE-FINNLP 252 Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T QE +KDI DM + R++QGDVGSGKT+V++I AV G Q IMAP Sbjct: 253 YKLTSGQEKVLKDITGDMQNGKSVNRLIQGDVGSGKTIVSIILSLVAVLNGYQCAIMAPT 312 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 ILA+QH+E ++ + ++++ G+ +++ L A+G I+IGTH+L +D + Sbjct: 313 EILAKQHFENFNSLLEDYGVRIKLLVGSTSSKVKKEILTNTANGLIDILIGTHSLIEDDV 372 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 +++ L L ++DEQHRFGV QR KL K ++M+ATPIPRTL L D+D S I Sbjct: 373 KFFNLGLNVIDEQHRFGVIQRSKLRYKNDKACNIIMSATPIPRTLSLILYADLDTSIIDT 432 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNS 509 P GRK IKT+ I ++++E + ++ L+ G +AY IC IE+ ++ N SV + F Sbjct: 433 MPGGRKNIKTLAINSSQVNEALTFIEKELNAGHQAYVICSLIEDNEDFENLESVEKVFKD 492 Query: 510 LHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 L + F + +A++HGR+S +K VM+ FKN L+++TTVIEVGI+V +A++++I NA Sbjct: 493 LKKFFKNYKLALLHGRLSTDEKNKVMEDFKNRKIDLIVSTTVIEVGINVANATVMMIYNA 552 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628 E FGL+ LHQLRGRVGRG+ S CI L++ S+ S+ R+ ++ ++ DGF IA +DL+ R Sbjct: 553 ERFGLSTLHQLRGRVGRGDAQSYCI-LFNNSKSEISWRRMKIMTDSTDGFYIANKDLELR 611 Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 G+ILG++QSG+P +A P +L A DAK+IL +D DLT Sbjct: 612 GFGDILGVRQSGIPNLRLANPLKDQKILSYASTDAKNILKEDIDLT 657 >gi|160896460|ref|YP_001562042.1| ATP-dependent DNA helicase RecG [Delftia acidovorans SPH-1] gi|160362044|gb|ABX33657.1| ATP-dependent DNA helicase RecG [Delftia acidovorans SPH-1] Length = 746 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 243/667 (36%), Positives = 362/667 (54%), Gaps = 37/667 (5%) Query: 40 RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99 R IDL + P + D + E V I ++ HS QL+ RR K+ ++DGT Sbjct: 68 RDIDLALHLPLRYEDETRITALRNAREGDTVQIEATVT-HSEVQLRPRRMLKVTVDDGTA 126 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEA 158 E L FF K + G ++ + G++K M+HP + + + P + Sbjct: 127 ECVLTFFSFYPSHQKTLSV-GARLRIRGEVKGGFWGRQMLHPAF---RAAGGDLPTALTP 182 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQ---KKSFP---SIAEAFNII 209 VY GL ++ V A+ R + LP+ + Q P S+ +A + Sbjct: 183 VYPTVAGLPQAYIRRAAVTAMLRADLSDTLPQGEHPPVAQFHGNGGLPPLFSLRDALQFL 242 Query: 210 HNPRK----AKDFEWTSPARERLAYDELLAGQIALLLM---RKQFKKEI--GIPINVEGK 260 H+P A + + PA +RL +ELLA Q++ R + + + P++ Sbjct: 243 HHPTPDVALATLEDHSHPAWQRLKAEELLAQQLSQYEAKRERARLRAPVLRAQPMDSAQG 302 Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320 +A++ L +PF T +Q+ + +IL DM ++ M R+LQGDVGSGKT+VA ++ A +EA Sbjct: 303 LARQFLDQLPFGLTGAQQRVVAEILADMERRMPMHRLLQGDVGSGKTVVAALSAVACIEA 362 Query: 321 GGQAVIMAPIGILAQQHYE----FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376 G Q +MAP ILA+QH+ +++ V + G + R LE + G+A Sbjct: 363 GWQCALMAPTEILAEQHFGKLVGWLEPLLAPLGKRVAWLAGAQKKKERTAMLELVHSGEA 422 Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIP 432 +++GTHA+ QD +Q+ L L ++DEQHRFGV QRL L QK A PH+L+M+ATPIP Sbjct: 423 ALVVGTHAVIQDQVQFKNLALAVIDEQHRFGVAQRLALRQKLAASGMEPHLLMMSATPIP 482 Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492 RTL ++ D+D+S I E P GR PI T +I +R DEVIER+ ++EG++ YW+CP I Sbjct: 483 RTLAMSYYADLDVSTIDELPPGRTPIVTKLIADSRKDEVIERIGAQVAEGRQVYWVCPLI 542 Query: 493 EEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551 EE + + + L E + ++H RM +K++VM+ F G +L++TTVI Sbjct: 543 EESEALDLSNATATHAYLSEMLPGVMVGLLHSRMPTAEKKAVMELFSAGVMGVLVSTTVI 602 Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY----HPPLSKNSYTR 607 EVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG S+C+LLY L + + R Sbjct: 603 EVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYSVGDSGRLGETAKDR 662 Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 L + T DGF IA DL+ R GE LG +QSG P A E LL+ AR+ A +L Sbjct: 663 LRAMAETNDGFEIARRDLEIRGPGEFLGARQSGAPMLRFADLEQDLMLLDWARELAPRML 722 Query: 668 TQDPDLT 674 Q P L Sbjct: 723 EQHPQLA 729 >gi|327461775|gb|EGF08106.1| DNA helicase RecG [Streptococcus sanguinis SK1] Length = 671 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 243/671 (36%), Positives = 385/671 (57%), Gaps = 30/671 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL+ GVG K + +K+ ET DLL Y P + D + + ++ + Sbjct: 3 LHQPLTVLPGVGPKSAEKFTKL-----GLET-LQDLLLYFPFRYEDFKSK-NVLDLEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + ++ Q + ++ GE+ L + L + G I V GK Sbjct: 56 KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184 K K + + + +D ++ VY L G+S V L K + L L Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQANLVKLIKTAFDQGLDLL-- 166 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 L E + + LL++ S EA +H P+ D++ A R+ ++EL Q+ L +++ Sbjct: 167 LEENLPQSLLERYQLVSRVEAVRAMHFPKDLADYK---QALRRVKFEELFYFQMQLQVLK 223 Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 ++ K G+ I+ + + +++PF T +QE ++ +ILQD+ M R+LQGDVG Sbjct: 224 RETKAVSNGLKIDWQLDAVAEKKQSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVG 283 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA +AM A AG Q+ +M P ILA+QH++ + + ++ + ++TG M A Sbjct: 284 SGKTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAE 341 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L I +GQ +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR L +K P V Sbjct: 342 RRETLAAIENGQVDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDV 401 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T + ++ V++ LK L +G Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLGVVLDWLKKELHKGA 461 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541 +AY+I P IEE + + ++ + L +F + +A++HG+M +KE++M FK G Sbjct: 462 QAYFISPLIEESEALDLKNAIALEEELTAYFGQQAQVALLHGKMKSEEKEAIMQDFKEGR 521 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S +L+ +P + Sbjct: 522 TDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-T 580 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 ++ R+ ++ T DGFL+AEEDLK R GEI G +QSG+P+F +A +LE ARK Sbjct: 581 ESGKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640 Query: 662 DAKHILTQDPD 672 A I T DP+ Sbjct: 641 VASQI-TADPN 650 >gi|21674393|ref|NP_662458.1| ATP-dependent DNA helicase RecG [Chlorobium tepidum TLS] gi|21647574|gb|AAM72800.1| ATP-dependent DNA helicase RecG [Chlorobium tepidum TLS] Length = 704 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 241/692 (34%), Positives = 371/692 (53%), Gaps = 39/692 (5%) Query: 8 PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67 P F PL +GVG K ++ L++ A DL P ++DR KI + + Sbjct: 2 PPFLPLQVIKGVGPKRAVILAE------AGIRSIADLYDCFPRRYLDRTTIKKIGALRDG 55 Query: 68 RIVTITGYISQHSSFQLQKR--RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 VT+ G ++ + F+ R +K + DG+G + L +F R G + Sbjct: 56 ETVTVVGSVTG-TRFEGGGRGGSRFKAQITDGSGVLELTWF-RGVHYFSKTIRSGELVAA 113 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVN------------------FPLIEAVYSLPTGLS 167 G++ M HP + D + +P EA+ GL+ Sbjct: 114 HGRVTFFGRTPGMQHPDFDKLGGDDESGDGQRDDELYKTGAIIPIYPTTEAMKQ--AGLN 171 Query: 168 VDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE 226 ++I+ A P+ + E++ +++ + I EA+ +H P A+ E AR Sbjct: 172 SAALRRIVHRAFREHPLRITEYLSPEIIAANNLMPIGEAYRQLHFPDSAEQLER---ARY 228 Query: 227 RLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285 R+ + EL Q+ L R + ++ + + G+ + +PF+ T +Q+ A+++I Sbjct: 229 RMKWSELFFAQLFFALRRTEERRHLTSVRFERSGEKTASLHERLPFTMTSAQKQAVREIY 288 Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345 D+ +M R+LQGDVGSGKTLVA AM AV+ G QA MAP ILA QHY +K Sbjct: 289 HDLKSGRQMNRLLQGDVGSGKTLVAQFAMTLAVDNGLQAAFMAPTEILAFQHYAGLKNSL 348 Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405 + I V ++TG + R + L R+ G+ I +GTHA+ + +Q+ +L LVI+DEQHR Sbjct: 349 EPLGIRVALLTGRQKKKEREEKLARLERGEIDIAVGTHAIIEAGVQFRRLGLVIIDEQHR 408 Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465 FGV QR L +KA PHVLLMTATPIPRTL + GD+D+S I E PAGRKPI+T + Sbjct: 409 FGVLQRKALQEKAENPHVLLMTATPIPRTLTMGIYGDLDVSIIAEMPAGRKPIQTRLCCE 468 Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHG 523 E+ L+ ++EG++AY + P +EE ++ + ++ E + L + +IHG Sbjct: 469 AEKPELYRLLRKQIAEGRQAYIVYPLVEESEKIDLKAATESYEQLRREVFPELRLGLIHG 528 Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583 ++ +KE+VM F++G +L+ TTVIEVG+DV +A+I++IE+AE FG++QLHQLRGRV Sbjct: 529 QLPAAEKEAVMAEFRSGRLDILVGTTVIEVGVDVPNATIMVIEHAERFGISQLHQLRGRV 588 Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643 GRGE SSC L+Y L+ ++ RL + T DGF ++E DL+ R G +LG +QSG Sbjct: 589 GRGEHASSCFLVY-TKLTGDAKDRLQAMAATGDGFRLSEIDLQIRGAGNMLGREQSGAAS 647 Query: 644 FL-IAQPELHDSLLEIARKDAKHILTQDPDLT 674 L IA ++ AR A ++ +D LT Sbjct: 648 GLRIADLLTDGDIMRAARAAAFELIRRDETLT 679 >gi|110596932|ref|ZP_01385222.1| ATP-dependent DNA helicase RecG [Chlorobium ferrooxidans DSM 13031] gi|110341619|gb|EAT60079.1| ATP-dependent DNA helicase RecG [Chlorobium ferrooxidans DSM 13031] Length = 706 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 239/696 (34%), Positives = 379/696 (54%), Gaps = 53/696 (7%) Query: 11 APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70 A + +GVG K + L +I + DLL Y P ++DR I ++++ V Sbjct: 5 ASIIYLKGVGSKKASILKEI------GISTVDDLLNYFPRRYLDRSAMKCIRDLADGETV 58 Query: 71 TITGYISQHSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 T+ G + + QL+ P +K+ L D TG++ L +F R G + V Sbjct: 59 TVVGTVLKT---QLEGTHPGRARFKVWLGDATGQLELTWF-RGVRFFSRSIVSGDALAVH 114 Query: 127 GKIKKLKNRIIMVHPHY-------------------IFHNSQDVN-FPLIEAVYSLPTGL 166 GK+ + M HP Y ++H + ++ +P +A+ GL Sbjct: 115 GKVSYFGRQAQMQHPDYDRLTASPHEPGEGEISDFDLYHTGRIISIYPTTDAMKQ--AGL 172 Query: 167 SVDLFKKIIVEALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR 225 + + ++ A V E + + +L + EA++ IH P + E AR Sbjct: 173 TSKQLRTLVARAFDEYRVRSEENLSQAILSDYHLLPLREAYHEIHFPSSHEALEL---AR 229 Query: 226 ERLAYDELLAGQIALLLMRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284 R+ + EL Q+ L + + + + + G + +++ R +P+ T +Q+ A+++I Sbjct: 230 YRMKWSELFYVQLMFALRQSELRTSKRAVIFTHSGVVTEQLYRTLPYELTDAQKQAVREI 289 Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344 +D+ + M R+LQGDVGSGKT+VA+ AMA A + G Q+ MAP ILA QHY +K+ Sbjct: 290 YRDLKTGSPMNRLLQGDVGSGKTIVAMFAMALAADNGLQSAFMAPTEILAVQHYLSMKRL 349 Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404 Q + V ++TG + R+ LE + G+ HI +GTHAL + + Y L LV++DEQH Sbjct: 350 FQPLGLRVGLLTGKQRKKERQALLEALGSGELHIAVGTHALIEGEVSYAGLGLVVIDEQH 409 Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464 RFGV QR L +KA PHVLLMTATPIPRTL + GD+D+S I + PAGR+P++T + Sbjct: 410 RFGVLQRKALREKAVNPHVLLMTATPIPRTLSMGVFGDLDVSVIRQMPAGRRPVRTSLCY 469 Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI------ 518 + +V + L+ ++EG++ Y + P +EE ++ + ++ VE F E +SS+ Sbjct: 470 EKELAKVYDFLRSEVAEGRQGYIVYPLVEESEKMDLKAAVESF----EELSSSVFPDLRL 525 Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578 +IHG+++ KE VMD F+ G LL+ TTVIEVG+DV +A++++IE+AE FGLAQLHQ Sbjct: 526 GLIHGQLTPDRKEMVMDEFRRGEVDLLVGTTVIEVGVDVPNATVMVIEHAERFGLAQLHQ 585 Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638 LRGRVGRGE S+C L+ P + + RL + +T DGF+I+E D + R G +LG +Q Sbjct: 586 LRGRVGRGEHGSTCFLICSMP-TAEARERLEAMVSTNDGFIISEIDARIRGVGNVLGKEQ 644 Query: 639 SG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 SG + IA +++ AR A ++ +D L Sbjct: 645 SGPLNGLRIADLTRDFDIMQSARIAAFRVIAEDAQL 680 >gi|15615058|ref|NP_243361.1| ATP-dependent DNA helicase RecG [Bacillus halodurans C-125] gi|10175115|dbj|BAB06214.1| ATP-dependent DNA helicase [Bacillus halodurans C-125] Length = 673 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 234/632 (37%), Positives = 362/632 (57%), Gaps = 25/632 (3%) Query: 42 IDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101 DLL + P + D RP I EI + T+ G + + + ++ ++ + G + Sbjct: 23 FDLLEHFPFRYEDYQVRP-IEEIKHDERATVVGTVQSEPTVRYYGKKKNRMSVRVLVGHV 81 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161 L + LK G+++T+TGK + + + + H + +E +YS Sbjct: 82 LLTAVFFNRAFLKQQLKVGQEVTLTGKWDQHRLTLTVNEVKQGNHTER----ATVEPIYS 137 Query: 162 LPTGLSVDLFKKIIVEALSRL------PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215 + L+ KK I AL + P+ PE E+ L K EA +H P Sbjct: 138 VSGKLTSKTLKKYIHVALRQFGEQITDPLPPEIRERYKLVSKR-----EAVFHLHMP--- 189 Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPT 274 D E AR R+ Y+E L Q+ + RK +++ G + V + + + +PFS T Sbjct: 190 SDREALKQARRRMVYEEFLFFQLKMQAFRKVNREQSNGRAVKVNEQKVDQFIAALPFSLT 249 Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334 ++QE +IL DMS RM R+LQGDVGSGKT+VA I M AAV AG QA +M P ILA Sbjct: 250 EAQEKVAGEILTDMSSPYRMNRLLQGDVGSGKTVVAAICMFAAVTAGKQAALMVPTEILA 309 Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394 +QH + +++ + + + ++TG++ R+ A+ + G ++IGTHAL QD + ++ Sbjct: 310 EQHAQSLERLFAPSGVRLTLLTGSVKGKRRQAAVTAVKAGDVDVVIGTHALIQDDVAFHD 369 Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454 L LVI DEQHRFGV+QR L K P VL MTATPIPRTL +++ GD+D+S I + PAG Sbjct: 370 LGLVITDEQHRFGVEQRRALRDKGAYPDVLFMTATPIPRTLAISAFGDMDVSIINQMPAG 429 Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 RK I+T + + V++ ++ L++G++AY ICP IEE ++ + ++ ++ + L +HF Sbjct: 430 RKEIETYWAKHDMLTRVLDFMEKELAKGRQAYVICPLIEESEKLDVQNAIDVHSILQQHF 489 Query: 515 TS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 + ++HGR+ +K++VM +F ++L++TTV+EVG++V +A+I++I +AE FG Sbjct: 490 EPRFQVGLMHGRLHPSEKDTVMTAFSENKIRILVSTTVVEVGVNVPNATIMVIYDAERFG 549 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 LAQLHQLRGRVGRGE S CILL P S+ R+ ++ T DGF ++E DL+ R G+ Sbjct: 550 LAQLHQLRGRVGRGEHQSYCILLADPK-SEVGKERMRIMTETNDGFTLSERDLELRGPGD 608 Query: 633 ILGIKQSGMPKFLIAQPELHD-SLLEIARKDA 663 G KQSG+P F +A +HD LE AR+DA Sbjct: 609 FFGAKQSGLPDFKVADV-VHDYRALETARQDA 639 >gi|324995182|gb|EGC27094.1| DNA helicase RecG [Streptococcus sanguinis SK678] gi|327469130|gb|EGF14602.1| DNA helicase RecG [Streptococcus sanguinis SK330] gi|327473512|gb|EGF18932.1| DNA helicase RecG [Streptococcus sanguinis SK408] Length = 671 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 242/671 (36%), Positives = 385/671 (57%), Gaps = 30/671 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL+ GVG K + +K+ ET DLL Y P + D + + ++ + Sbjct: 3 LHQPLTVLPGVGPKSAEKFAKL-----GLET-LQDLLLYFPFRYEDFKSK-NVLDLEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + ++ Q + ++ GE+ L + L + G + V GK Sbjct: 56 KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184 K K + + + +D ++ VY L G+S V L K + L L Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDLL-- 166 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 L E + + LL++ S EA +H P+ D++ A R+ ++EL Q+ L +++ Sbjct: 167 LEENLPQSLLERYQLVSRVEAVRAMHFPKDLTDYK---QALRRVKFEELFYFQMQLQVLK 223 Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 ++ K G+ I+ + + +++PF T +QE ++ +ILQD+ M R+LQGDVG Sbjct: 224 RETKAVSNGLKIDWQLDAVAEKKKSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVG 283 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA +AM A AG Q+ +M P ILA+QH++ + + ++ + ++TG M A Sbjct: 284 SGKTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAE 341 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L I +GQ +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR L +K P V Sbjct: 342 RRETLAAIENGQVDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDV 401 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T + ++ V++ LK L +G Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLGVVLDWLKKELHKGA 461 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541 +AY+I P IEE + + ++ + L +F + +A++HG+M +KE++M FK G Sbjct: 462 QAYFISPLIEESEALDLKNAIALEEELTAYFGQQAQVALLHGKMKSEEKEAIMQDFKEGR 521 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S +L+ +P + Sbjct: 522 TDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-T 580 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 ++ R+ ++ T DGFL+AEEDLK R GEI G +QSG+P+F +A +LE ARK Sbjct: 581 ESGKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640 Query: 662 DAKHILTQDPD 672 A I T DP+ Sbjct: 641 VASQI-TADPN 650 >gi|298505437|gb|ADI84160.1| ATP-dependent DNA helicase RecG [Geobacter sulfurreducens KN400] Length = 767 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 240/698 (34%), Positives = 384/698 (55%), Gaps = 36/698 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 L P+ +GVG K + L++ I+ +A L+ P+ + DR ++ + Sbjct: 65 LETPMQFIKGVGPKMAEILARKGIVTVEDA--------LYLLPNRYEDRRQVVPMNRLRP 116 Query: 67 ERIVTITGYISQHSSFQLQK-RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 G + + RR ++++ D +G ++ +F ++ + GR+ Sbjct: 117 GETCVFAGEVVSADVVTTKGGRRFFEVMARDASGVMSFKWFNYHAAFMRKAWQPGRRGIF 176 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQD----------VNFPLIEAVYSLPTGLSVDLFKKII 175 TG++ + + + HP + + V F + VY L GL+ +K++ Sbjct: 177 TGQVTQYGLQREVHHPDVDWLAEGETVEAAMARDPVGFGRLVPVYPLTEGLNQKALRKVM 236 Query: 176 VEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAY 230 E + R P + + ++++++ +AEA +H P D E PA L + Sbjct: 237 KEVVDRFAPCVESALPARVIRERALLPLAEALGAVHFPAADADPRALEEGRDPAHRTLVF 296 Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290 DE ++ L L R+ E GI +V + +L+ +PF+ T++Q + +I DM Sbjct: 297 DEFFFLELGLALKRRGVTLEPGIAFSVNHTYTKPLLKLLPFALTEAQRRVLAEIKADMMA 356 Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350 + M R++QGDVG GKTLVAL+A AVE G Q IMAP ILA+QHY I ++ + + Sbjct: 357 PHPMHRLVQGDVGCGKTLVALLAALVAVENGYQVAIMAPTEILAEQHYLNIHRWCEQLGV 416 Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410 V ++T ++ + ALER+A G+ I+IGTHA+ QD +++++L L IVDEQHRFGV Q Sbjct: 417 TVALLTSSLKGKAKAGALERVARGEVQIVIGTHAVIQDKVEFHRLGLGIVDEQHRFGVLQ 476 Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470 R L +K P +L+MTATPIPRTL +T GD+ +S I E P GR P++T I +R + Sbjct: 477 RGLLRKKGENPDILVMTATPIPRTLAMTVFGDLSLSVIDELPPGRTPVETKICTDSRRRQ 536 Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI------AIIHGR 524 V ++ ++ G +AY I P +EE ++S ++ + + EH + + ++HGR Sbjct: 537 VYGIIRDEVAAGHQAYVIYPLVEESEKSELKAATQ----MAEHLANDVFPDLRLGVLHGR 592 Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584 M +KE+VM SFK +L++TTVIEVGIDV +A++++IE+AE FGL+QLHQLRGRVG Sbjct: 593 MKPEEKEAVMRSFKGREIDILVSTTVIEVGIDVPNATVMVIEHAERFGLSQLHQLRGRVG 652 Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644 RG S CIL+ LS + RL V+++T DGF IAE DL+ R G+ LG +Q+G+P F Sbjct: 653 RGSATSRCILMASDRLSDDGVKRLRVMESTTDGFRIAEADLEIRGPGDFLGTRQAGIPDF 712 Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682 +A +LE AR +A + +DP+L + + +R Sbjct: 713 RVANILRDGRILEEARAEAFELAERDPELRAPGHEPLR 750 >gi|260435719|ref|ZP_05789689.1| ATP-dependent DNA helicase RecG [Synechococcus sp. WH 8109] gi|260413593|gb|EEX06889.1| ATP-dependent DNA helicase RecG [Synechococcus sp. WH 8109] Length = 838 Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust. Identities = 233/688 (33%), Positives = 380/688 (55%), Gaps = 35/688 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L +P++ RGVG K++ L+ I DLL Y+P +D +I + Sbjct: 139 LDSPITQIRGVGPKFAARLASI------GLLLVRDLLRYYPRDHVDYSAMRRIEALVSGE 192 Query: 69 IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRK--- 122 TI I + + F + I+ L D TG + + F +F+G++ Sbjct: 193 TATIVATIRRCNGFVSPRNTNLAIIELQLQDPTGRLKVSRFLAGKRFSSPAYFKGQQRLY 252 Query: 123 -----ITVTGKIKKLKNRIIMVHP-----HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFK 172 + V+G +K I P + + I VY L G+ D F+ Sbjct: 253 PVGATVAVSGLVKDGPYGITFQDPLIEVLDSPSSPVKSPSIGRIFPVYPLTEGVGADRFR 312 Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232 +I + L P+ + + ++ P+++EA +H P KD E R RL +DE Sbjct: 313 SLIDQVLPLAASWPDPLPAAIQRQFLLPALSEALQALHAP---KDRESLDRGRRRLVFDE 369 Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGK---IAQKILRNIPFSPTKSQESAIKDILQDMS 289 L Q+ LL R+ + G ++++ + + + +PF T +Q+ ++I D++ Sbjct: 370 FLLLQLGLLRRRQALRSRTGPDLDLQSSSNGLVGEFMDLLPFRFTAAQQRVFQEIEADLA 429 Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349 + M R++QGDVGSGKT+VA+ A+ + + +G Q +MAP +LA+QHY + ++ Sbjct: 430 RNEPMARLVQGDVGSGKTVVAIAALLSTIASGWQGALMAPTEVLAEQHYRNLCQWLPQLH 489 Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409 + V ++TG+ P+ RR+ ++ +A+G +++GTHAL +D + + +L LV+VDEQHRFGV Sbjct: 490 VSVALLTGSTPRPRRRELMDDLANGSLKVLVGTHALLEDPVVFNRLGLVVVDEQHRFGVH 549 Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469 QR +L K PH+L MTATPIPRTL L+ GD+D+S+I E P GR PI+T ++ + + Sbjct: 550 QRDRLLNKGLQPHLLTMTATPIPRTLALSMHGDLDVSQIDELPPGRTPIRTRMLTAAKRE 609 Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSD 527 + E ++ + G++AY + P ++E ++ RS VE L +A+ +HGR+S Sbjct: 610 KAYELIREEVQLGQRAYVVLPLVDESEKLELRSAVEVHAELASEVFPDLAVGLLHGRLSS 669 Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587 +K++V+ F G ++L++TTV+EVG+DV +AS+++I++AE FGLAQLHQLRGRVGRG Sbjct: 670 AEKQAVLTDFAAGKSQVLVSTTVVEVGVDVPEASVMVIDHAERFGLAQLHQLRGRVGRGA 729 Query: 588 EISSCILLYHP--PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645 S C+L+ PL++ RL VL + DGF IAE DL+ R G++LG +QSG+P Sbjct: 730 AASHCLLINGSSNPLARQ---RLDVLVRSTDGFEIAEMDLRLRGPGQVLGSRQSGLPDLA 786 Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDL 673 +A ++LE AR A+ +L DP+L Sbjct: 787 LASLADDGAVLEDARTAAQELLNNDPEL 814 >gi|240127511|ref|ZP_04740172.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae SK-93-1035] gi|268685886|ref|ZP_06152748.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae SK-93-1035] gi|268626170|gb|EEZ58570.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae SK-93-1035] Length = 680 Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust. Identities = 228/600 (38%), Positives = 341/600 (56%), Gaps = 7/600 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H + R+ + + DG+G + L F + G++I G+IK M Sbjct: 65 HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP + L VY GL+ ++II AL P L + + LL + Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLGRLK 182 Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 P +AE+ ++H+P + + T PA +RL +DELLA Q+++ L R++ Sbjct: 183 LPRLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGTAAA 242 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + +G + Q + + +PF+ T +QE + +I +DM+Q + M R+LQGDVGSGKT+VA ++ Sbjct: 243 LRGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSA 302 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A+E+G Q +MAP ILA+QH+ K++ + I V + G++ + + +A ++A G Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVCLFGSLRKKAKDEAKAKLADG 362 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 I +GTHALF D + ++ L L IVDEQHRFGV QRL L K H L+M+ATPIPRT Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLSIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I E P GR PIKT ++ R EV + +G++AYW+CP IEE Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEE 482 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ E L +I ++HGRM +K VM F G +L+ATTVIEV Sbjct: 483 SETLQLQTAAETLARLQTALPEPNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEV 542 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +A++++IE+AE GLAQLHQLRGRVGRG S C+LL+ PL + + RL V+ Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA +DL R GE LG +QSG+P A+ E LLE AR+ A ++ Q+P++ Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 662 >gi|325690294|gb|EGD32298.1| DNA helicase RecG [Streptococcus sanguinis SK115] Length = 671 Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust. Identities = 242/671 (36%), Positives = 386/671 (57%), Gaps = 30/671 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL+ GVG K + +K+ ET DLL Y P + D + + ++ + Sbjct: 3 LHQPLTVLPGVGPKSAEKFAKL-----GLET-LQDLLLYFPFRYEDFKSK-NVLDLEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + ++ Q + ++ GE+ L + L + G I V GK Sbjct: 56 KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184 K K + + + +D ++ VY L G+S V L K + L L Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDLL-- 166 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 L E + + LL++ S EA +H P+ D++ A R+ ++EL Q+ L +++ Sbjct: 167 LEENLPQLLLERYQLVSRVEAVRAMHFPKDLADYK---QALRRVKFEELFYFQMQLQVLK 223 Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 ++ K G+ I+ + + +++PF T +QE ++ +ILQD+ M R+LQGDVG Sbjct: 224 RESKAVSNGLKIDWQSDAVAEKKKSLPFELTSAQERSLAEILQDLRSPGHMNRLLQGDVG 283 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA +AM A AG Q+ +M P ILA+QH++ + + ++ + ++TG M A Sbjct: 284 SGKTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAE 341 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L I +GQ +I+GTHAL Q++++Y+ L LVI+DEQHRFGV+QR L +K P V Sbjct: 342 RRETLAAIENGQVDMIVGTHALIQEAVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDV 401 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T + +++ V++ LK L +G Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLKKELHKGA 461 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541 + Y+I P IEE + + ++ + L +F + +A++HG+M +KE++M FK G Sbjct: 462 QVYFISPLIEESEALDLKNAIALEEELTAYFGQQAQVALLHGKMKSEEKEAIMQDFKEGR 521 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S +L+ +P + Sbjct: 522 TDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-T 580 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 ++ R+ ++ T DGFL+AEEDLK R GEI G +QSG+P+F +A +LE ARK Sbjct: 581 ESGKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640 Query: 662 DAKHILTQDPD 672 A I T DP+ Sbjct: 641 VASQI-TADPN 650 >gi|324993503|gb|EGC25423.1| DNA helicase RecG [Streptococcus sanguinis SK405] Length = 671 Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust. Identities = 243/671 (36%), Positives = 385/671 (57%), Gaps = 30/671 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL+ GVG K + +K+ ET DLL Y P + D + + ++ + Sbjct: 3 LHQPLTVLPGVGPKSAEKFAKL-----GLET-LQDLLLYFPFRYEDFKSK-NVLDLEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + ++ Q + ++ GE+ L + L + G I V GK Sbjct: 56 KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184 K K + + + +D ++ VY L G+S V L K + L L Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDLL-- 166 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 L E + + LL++ S EA +H P+ D++ A R+ ++EL Q+ L +++ Sbjct: 167 LEENLPQPLLERYQLVSRVEAVRAMHFPKDLADYK---QALRRVKFEELFYFQMQLQVLK 223 Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 ++ K G+ I+ + + +++PF T +QE ++ +ILQD+ M R+LQGDVG Sbjct: 224 RETKAVSNGLKIDWQLDAVAEKKKSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVG 283 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA +AM A AG Q+ +M P ILA+QH++ + + ++ + ++TG M A Sbjct: 284 SGKTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAE 341 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L I +GQ +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR L +K P V Sbjct: 342 RRETLAAIENGQVDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDV 401 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T + ++ V++ LK L +G Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLGVVLDWLKKELHKGA 461 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541 +AY+I P IEE + + ++ + L +F + +A++HG+M +KE++M FK G Sbjct: 462 QAYFISPLIEESEALDLKNAIALEEELTAYFGQQAQVALLHGKMKSEEKEAIMQDFKEGR 521 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S +L+ +P + Sbjct: 522 TDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-T 580 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 ++ R+ ++ T DGFL+AEEDLK R GEI G +QSG+P+F +A +LE ARK Sbjct: 581 ESGKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640 Query: 662 DAKHILTQDPD 672 A I T DP+ Sbjct: 641 VASQI-TADPN 650 >gi|240013433|ref|ZP_04720346.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae DGI18] gi|240120504|ref|ZP_04733466.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID24-1] Length = 680 Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust. Identities = 228/600 (38%), Positives = 341/600 (56%), Gaps = 7/600 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H + R+ + + DG+G + L F + G++I G+IK M Sbjct: 65 HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP + L VY GL+ ++II AL P L + + LL + Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182 Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 P +AE+ ++H+P + + T PA +RL +DELLA Q+++ L R++ Sbjct: 183 LPRLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGTAAA 242 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + +G + Q + + +PF+ T +QE + +I +DM+Q + M R+LQGDVGSGKT+VA ++ Sbjct: 243 LRGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSA 302 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A+E+G Q +MAP ILA+QH+ K++ + I V + G++ + + +A ++A G Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVCLFGSLRKKAKDEAKAKLADG 362 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 I +GTHALF D + ++ L L IVDEQHRFGV QRL L K H L+M+ATPIPRT Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLSIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I E P GR PIKT ++ R EV + +G++AYW+CP IEE Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEE 482 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ E L +I ++HGRM +K VM F G +L+ATTVIEV Sbjct: 483 SETLQLQTAAETLARLQTALPEPNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEV 542 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +A++++IE+AE GLAQLHQLRGRVGRG S C+LL+ PL + + RL V+ Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA +DL R GE LG +QSG+P A+ E LLE AR+ A ++ Q+P++ Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 662 >gi|157362881|ref|YP_001469648.1| ATP-dependent DNA helicase RecG [Thermotoga lettingae TMO] gi|157313485|gb|ABV32584.1| ATP-dependent DNA helicase RecG [Thermotoga lettingae TMO] Length = 783 Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust. Identities = 243/661 (36%), Positives = 376/661 (56%), Gaps = 34/661 (5%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DL+FY P + DR ISEIS E +T G + + ++ +L DG ++ Sbjct: 135 DLIFYFPRDYEDRRKIIPISEISFEGKLTTRGKVVNVETKKIGSMTITAAVLADGVSQLL 194 Query: 103 LLFF-----YRKTEMLKNVFFEGRKITVTGKIKKLK-NRIIMVHPHYIFHNSQDVNFPLI 156 L +F ++ ++LKN + I TG +K + I MV+P + V L Sbjct: 195 LKWFNQEYLHKGLQVLKN-----KTIYATGLVKHSQFGGIEMVNPEIEPEDGTQVLEIL- 248 Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216 +Y L G+S ++I+ E +S + + + ++L++K+ I+ A IH P+ Sbjct: 249 -PIYPLTHGISQKEIRRIVRENISCVCHYTDELPEELMKKRKLMDISRALLGIHFPKSNY 307 Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276 + + ERLAY+EL Q ALLL RK F++ G+P + GK+A++ LR +PF T S Sbjct: 308 HLKKSI---ERLAYEELFLMQFALLLSRKSFEEIGGLPKKIPGKLAEEFLRKLPFKLTDS 364 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q+ A + I D+ M R+LQGDVG GKT+VA +A+ EAG Q+ +MAP ILA Q Sbjct: 365 QKEAHRQIRADLMSNKPMSRLLQGDVGCGKTVVAQLAIVDNFEAGFQSAVMAPTSILAMQ 424 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 HY + + I ++ G + K ++ G+ ++IGTH L Q+ + + L Sbjct: 425 HYRRMSPAFEEMGIRTALLLGETSSREKEKIKRMLSDGEISVVIGTHTLIQEDVSFSNLG 484 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 LVI+DEQHRFGV+QR L K A L+MTATPIPRTL LT GD+DI+ I E P GRK Sbjct: 485 LVIIDEQHRFGVKQREALVSKGKALDTLVMTATPIPRTLALTIYGDLDITVIDEMPPGRK 544 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +KT+++ ++++++V E +K ++EG + + + P IEE + ++ + +HE+ + Sbjct: 545 DVKTMLVSVSKLEQVYEFVKKEIAEGGQVFIVYPLIEESDKIQAKAAI----RMHEYLSK 600 Query: 517 SI------AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 I ++HG+MS +K+ +M+ F G +LI+TTVIEVGIDV A+++IIEN E Sbjct: 601 KIFGEFRVGLLHGKMSQQEKDKIMERFATGEFDILISTTVIEVGIDVPRATVMIIENPER 660 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630 FGLAQLHQLRGR+GRG++ C L+ + ++ RL T++GF +AE D+K R Sbjct: 661 FGLAQLHQLRGRIGRGDKQGYCFLVVG-NVDDDALERLRYFSMTKNGFEVAEYDMKLRGP 719 Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL---TQDPDLT----SVRGQSIRI 683 GEILG+KQ G+P+ IA LL AR DA+ I+ Q PD+ ++ G+ +++ Sbjct: 720 GEILGLKQHGLPELKIADLIRDRELLFRARNDAEEIVRKKEQYPDIVKKVKTIYGERLKL 779 Query: 684 L 684 + Sbjct: 780 V 780 >gi|332201120|gb|EGJ15191.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA47901] Length = 671 Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust. Identities = 245/674 (36%), Positives = 386/674 (57%), Gaps = 30/674 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GEI + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEIVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL K S +A +H P KD A R+ ++EL Q+ L +++ + Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQMLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ +N + + ++PF+ T++QE ++++IL DM + M R+LQGDVGSG Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QA +M P ILA+QH+E ++ N ++ ++TG++ A +R Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T I ++ +V+ L+ + +G +A Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + +A++HGRM +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + + Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642 Query: 664 KHILT-----QDPD 672 +I + +DP+ Sbjct: 643 SYISSIEAWQEDPE 656 >gi|256425864|ref|YP_003126517.1| ATP-dependent DNA helicase RecG [Chitinophaga pinensis DSM 2588] gi|256040772|gb|ACU64316.1| ATP-dependent DNA helicase RecG [Chitinophaga pinensis DSM 2588] Length = 703 Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust. Identities = 255/707 (36%), Positives = 390/707 (55%), Gaps = 35/707 (4%) Query: 4 SFLNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62 F N + + P+ +GVG + L K I F DLL+Y P ++DR KI Sbjct: 2 DFRNAILSNPIEYLKGVGPQRGELLRKEIGVHT-----FRDLLYYFPFRYVDRTNVEKII 56 Query: 63 EISEE-RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF----YRKTEMLKNVF 117 + + V I G I++ ++ + L D TGEI+L++F + + + NV Sbjct: 57 SLHMQMDYVQIRGKITRMEVIGDKRAKRLVATLRDETGEISLVWFQGWQWVEKSLQTNVA 116 Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSL-----PTGLSVDLF 171 + V GKI + M HP + +E VY GL+ Sbjct: 117 Y-----LVFGKIAVFNGYLQMSHPEMDLVTEETATGKQFLEPVYYTTEKLKARGLTAKAI 171 Query: 172 KKIIVEALSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA 229 K+ L +L +PE I +LQ+ A+A IH P D + AR RL Sbjct: 172 GKLTKNLLEQLSPGEIPENIPTSILQQYRLMDRAKAHFKIHLPVNEDD---ANLARRRLK 228 Query: 230 YDELLAGQIAL--LLMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQ 286 ++EL QI + L +R+Q + G N G ++PF+ T +Q+ +K+I Q Sbjct: 229 FEELFIAQIRICRLKIRRQ-QSSRGFVFNTVGDAFNTFYNEHLPFTLTGAQKRVLKEIRQ 287 Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346 D + +M R++QGDVGSGKT+VAL+ M AV+ G QA +MAP IL+QQHY+ I + + Sbjct: 288 DTATGRQMNRLIQGDVGSGKTMVALLTMLLAVDNGFQACLMAPTEILSQQHYKSISELLE 347 Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 + V ++TGN+ R++ L+ + G+ HI+IGTHAL + + + L + IVDEQHRF Sbjct: 348 QMPVKVALLTGNVKGKARKQILKAVEEGEIHILIGTHALLEPQVVFKNLGMAIVDEQHRF 407 Query: 407 GVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465 GV QR +L QK T PH+L+MTATPIPRTL +T GD+D+S I E P GRKPI TV Sbjct: 408 GVAQRARLWQKNTMPPHILVMTATPIPRTLAMTVYGDLDVSVIDELPPGRKPITTVHRTE 467 Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIH 522 + +V++ +K + +G++AY + P IE+ + ++ ++++ + + F I+++H Sbjct: 468 FQRPQVMDFIKEEIRKGRQAYIVYPLIEDSETLDYENLMKGYEEVKAFFPEPQYYISMVH 527 Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582 GR KE+ M F G ++++ATTVIEVG++V +AS+++IE+ E FGL+QLHQLRGR Sbjct: 528 GRQPVDMKETNMQRFVKGDTQIMVATTVIEVGVNVPNASVMVIESTERFGLSQLHQLRGR 587 Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642 VGRG E S CIL+ + +S R+ V+ T DGF+I+E+D++ R G+I G +QSG+ Sbjct: 588 VGRGAEQSFCILMTGNKVGADSKERIQVMVQTNDGFVISEKDMELRGPGDIEGTRQSGLI 647 Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQ 689 +A +LE AR A+ +L +DPDL+ QS++ L Q Sbjct: 648 DLKLADIVEDRPILEAARASAEKLLQEDPDLSMPENQSLQQFLAAQQ 694 >gi|150019944|ref|YP_001305298.1| ATP-dependent DNA helicase RecG [Thermosipho melanesiensis BI429] gi|149792465|gb|ABR29913.1| ATP-dependent DNA helicase RecG [Thermosipho melanesiensis BI429] Length = 773 Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust. Identities = 235/641 (36%), Positives = 366/641 (57%), Gaps = 32/641 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLL Y P + DR + + E+ V +G +S + +L+DG +I Sbjct: 126 DLLNYFPRDYEDRRKVMPLPILKEDEKVVTSGVLSAVEKIKKSGLSIVSAVLSDGMYQIL 185 Query: 103 LLFFYRKTEMLKNVF--FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA-- 158 L +F + + NV +K+ V G +KK F+ + +++ P IE Sbjct: 186 LKWF--NQDYIGNVLKTLMRKKVYVFGLVKKG------------FYGTLEIHNPEIEVIG 231 Query: 159 --------VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIH 210 VYSL G+ ++ ++II E L + +++ +L K+ + +A+ +H Sbjct: 232 NSSREIMPVYSLTEGIKQNVIRRIIKENLYNIYNFKDYLPDELKGKRRLLDVYQAYTGMH 291 Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270 P +R RLAY+E+L Q+A L +K+ + GI N EGK++ ++L+ +P Sbjct: 292 FPL---SMYHQKMSRFRLAYEEILYLQLAFFLSKKENENIGGISKNFEGKLSSELLKQLP 348 Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T +Q +A ++I +D+ M R+LQGDVGSGKT+V+ +A+ EAG Q+ +M P Sbjct: 349 FKLTNAQLNAYEEIKKDLKSDKPMNRLLQGDVGSGKTIVSELAILDNYEAGFQSAVMVPT 408 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 ILA Q+++ + ++ I V ++ G + + + + +G +++GTHAL Q+ + Sbjct: 409 SILAIQNFKKMFEHLSRFGIRVALLLGATSTTEKNRIKQMLKNGDLDVVVGTHALIQEDV 468 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + L LV++DEQHRFGV+QR +L K L+MTATPIPRTL L+ GD+D+S I E Sbjct: 469 HFKNLGLVVIDEQHRFGVRQRKELIAKGKLVDTLVMTATPIPRTLSLSVYGDLDVSIIDE 528 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P GRKPIKT ++ +IDEV + + + G +AY + P I++ ++ + +S V L Sbjct: 529 MPKGRKPIKTFVVHQTKIDEVYKFIISEVENGGQAYIVYPLIDDSEKLSVKSAVSMHEKL 588 Query: 511 HEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 E + I A+IHGRMSD +K+ +M F G K+LI+T+VIEVGIDV A++I+IENA Sbjct: 589 REEYFKDISTALIHGRMSDFEKDEIMYKFSRGEIKILISTSVIEVGIDVPQATVIVIENA 648 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628 E FGLAQLHQLRGRVGRG + S C L +S+ + RL+ +T DGF I+E DLK R Sbjct: 649 ERFGLAQLHQLRGRVGRGNKQSYCYLTV-GNVSRETLERLNFFASTNDGFKISEYDLKLR 707 Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669 GE LG+KQ G+P+F +A ++ +AR+DAK+I+ Sbjct: 708 GPGEFLGVKQHGLPEFKVADIINDIDIILMAREDAKYIVNN 748 >gi|261363938|ref|ZP_05976821.1| ATP-dependent DNA helicase RecG [Neisseria mucosa ATCC 25996] gi|288567957|gb|EFC89517.1| ATP-dependent DNA helicase RecG [Neisseria mucosa ATCC 25996] Length = 680 Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust. Identities = 228/600 (38%), Positives = 342/600 (57%), Gaps = 7/600 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H + R+ + + D +G + L F + G++I G+IK M Sbjct: 65 HQEVTFKPRKQLIVQIADDSGSVLFLRFIHFYASHQKQMAAGKRIRAVGEIKHGFYGDEM 124 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP S + L +Y GL+ ++II AL P L + + LL + Sbjct: 125 IHPKIRDAESSGLAESLT-PIYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLGRLK 182 Query: 199 FPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 P +AE+ ++H+P + S PA +RL +DELLA Q+++ L R++ Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGALPAWQRLKFDELLAQQLSMRLARQKRVSGTAAA 242 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + +G + Q + +PF+ T +QE + +I +DM+Q + M R+LQGDVGSGKT+VA ++ Sbjct: 243 LGGDGTLTQALRHALPFALTDAQERVVSEIRRDMAQTHPMHRLLQGDVGSGKTIVAALSA 302 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A+E+G QA +MAP ILA+QH+ K++ + + V ++G+ + + +A ++A G Sbjct: 303 LTAIESGAQAAVMAPTEILAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADG 362 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 I +GTHALF D +++ L LVIVDEQHRFGV QRL L K H L+M+ATPIPRT Sbjct: 363 TVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLALKNKGRDVHQLMMSATPIPRT 422 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I + P GR PIKT ++ R EV + + +G++AYW+CP IEE Sbjct: 423 LAMSFFADLDVSVIDQLPPGRTPIKTRLVNNIRRAEVEGFVLNICRKGQQAYWVCPLIEE 482 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ E L +I ++HGRM +K VM F G +L+ATTVIEV Sbjct: 483 SETLQLQTATETLEQLQAALPELNIGLVHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEV 542 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +A++++IE+AE GLAQLHQLRGRVGRG S C+LL+ PLS+ + RL V+ Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYE 602 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA +DL R GE LG +QSG+P A E LLE AR+ A ++ Q+P++ Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEEDLHLLEQAREIAPMLIEQNPEI 662 >gi|260222588|emb|CBA32298.1| ATP-dependent DNA helicase recG [Curvibacter putative symbiont of Hydra magnipapillata] Length = 729 Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust. Identities = 238/670 (35%), Positives = 366/670 (54%), Gaps = 40/670 (5%) Query: 40 RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99 R IDL + P + D K+ ++ + V I ++ H + RR + ++DGT Sbjct: 50 RDIDLALHLPLRYEDETRIVKLIDVRDSTPVQIEATVT-HQEVSYRPRRQLIVTVDDGTD 108 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEA 158 TL FF K + G K+ V G++K M+HP + + + P + Sbjct: 109 TCTLRFFSFYGSQQKALAV-GNKVRVRGEVKGGFLGRTMLHPTF---KAAGGDLPTALTP 164 Query: 159 VYSLPTGLSVDLFKKIIVEALSRL-------PVLPEWIEKDLLQ--KKSFPSIAEAFNII 209 VY GL +K ++ L+R P EW++ Q +++ ++ +A + Sbjct: 165 VYPTVAGLPQAYLRKAVLSGLARADLSDTFAPGDLEWLQHRQHQNGQQALWTLRDALQFL 224 Query: 210 HNPRKAKDFEW----TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI--NVEG-KIA 262 H+P + + PA +RL +ELLA QI+ L R++ + + P VEG + Sbjct: 225 HHPTPDVSLDTLMDHSHPAWQRLKAEELLAQQISQLQSRRE-RASLKAPQLQAVEGGTLH 283 Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 ++L +PF T +Q+ ++I +DM+++ M R+LQGDVG+GKT+VA ++ A ++AG Sbjct: 284 ARLLAALPFGLTNAQQRVGEEIAKDMARRIPMHRLLQGDVGAGKTVVAALSAAICMDAGW 343 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q +MAP ILA+QH+ + + + I +TG RR L I G+A +++GT Sbjct: 344 QCALMAPTEILAEQHFRKLLGWLEPLGITTAWLTGTQKAKERRAMLALIESGEAQLVVGT 403 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRL----KLTQKATAPHVLLMTATPIPRTLVLT 438 HA+ QD +++ L L I+DEQHRFGV QRL KL + PH+L+MTATPIPRTL ++ Sbjct: 404 HAIIQDKVKFKNLALAIIDEQHRFGVAQRLALRNKLHHEDMEPHLLMMTATPIPRTLAMS 463 Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498 D+D+S + E P GR PI T ++ R DEVIER++ +S+G++ YW+CP IEE + Sbjct: 464 YYADLDVSTLDELPPGRTPIVTKVVNDARRDEVIERIRAQISQGRQVYWVCPLIEESEAL 523 Query: 499 NFRSVVERFNSLHEHFTSS---------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549 + + + L E + I ++H RM DK++VM +F G +L++TT Sbjct: 524 DLSNATQTHADLAEALQGATRSDGQPVLIGLLHSRMHVDDKKAVMGAFTAGLMSVLVSTT 583 Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH----PPLSKNSY 605 VIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG S+C+LLY P L + + Sbjct: 584 VIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYSTGDAPRLGEAAR 643 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665 RL + T DGF IA DL+ R GE LG +QSG A LL+ A+ +A Sbjct: 644 ERLKAMAETNDGFEIARRDLEIRGPGEFLGARQSGEAMLRFADLATDTELLDWAKAEAPM 703 Query: 666 ILTQDPDLTS 675 +L P L + Sbjct: 704 LLDTYPHLAA 713 >gi|240112222|ref|ZP_04726712.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae MS11] gi|268598281|ref|ZP_06132448.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae MS11] gi|293397684|ref|ZP_06641890.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae F62] gi|268582412|gb|EEZ47088.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae MS11] gi|291611630|gb|EFF40699.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae F62] Length = 680 Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust. Identities = 228/600 (38%), Positives = 341/600 (56%), Gaps = 7/600 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H + R+ + + DG+G + L F + G++I G+IK M Sbjct: 65 HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP + L VY GL+ ++II AL P L + + LL + Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182 Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 P +AE+ ++H+P + + T PA +RL +DELLA Q+++ L R++ Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGTAAA 242 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + +G + Q + + +PF+ T +QE + +I +DM+Q + M R+LQGDVGSGKT+VA ++ Sbjct: 243 LRGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSA 302 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A+E+G Q +MAP ILA+QH+ K++ + I V + G++ + + +A ++A G Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVCLFGSLRKKAKDEAKAKLADG 362 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 I +GTHALF D + ++ L L IVDEQHRFGV QRL L K H L+M+ATPIPRT Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLSIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I E P GR PIKT ++ R EV + +G++AYW+CP IEE Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEE 482 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ E L +I ++HGRM +K VM F G +L+ATTVIEV Sbjct: 483 SETLQLQTAAETLARLQTALPEPNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEV 542 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +A++++IE+AE GLAQLHQLRGRVGRG S C+LL+ PL + + RL V+ Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA +DL R GE LG +QSG+P A+ E LLE AR+ A ++ Q+P++ Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 662 >gi|225859451|ref|YP_002740961.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae 70585] gi|225721463|gb|ACO17317.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae 70585] Length = 671 Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust. Identities = 244/674 (36%), Positives = 386/674 (57%), Gaps = 30/674 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL K S +A +H P KD A R+ ++EL Q+ L +++ + Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQMLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ +N + + ++PF+ T++QE ++++IL DM + M R+LQGDVGSG Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QA +M P ILA+QH+E ++ N ++ ++TG++ A +R Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T I ++ +V+ L+ + +G +A Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + +A++HGRM +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + + Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKDRMRIMTETTNGFILAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642 Query: 664 KHILT-----QDPD 672 +I + +DP+ Sbjct: 643 SYISSIEAWQEDPE 656 >gi|325955344|ref|YP_004239004.1| ATP-dependent DNA helicase RecG [Weeksella virosa DSM 16922] gi|323437962|gb|ADX68426.1| ATP-dependent DNA helicase RecG [Weeksella virosa DSM 16922] Length = 701 Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust. Identities = 244/681 (35%), Positives = 391/681 (57%), Gaps = 31/681 (4%) Query: 11 APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI--SEER 68 P+ +GVG + + L K + R+ DLL + P ++DR KI E+ + Sbjct: 8 TPIEYLKGVGPERAKLLQKELQI-----FRYEDLLNHFPFRYVDRSRFYKIKELVPTMAE 62 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF-YRKTEMLKNVFFEGRKITVTG 127 + I +S + +K+R ++D TG++ L++F + K ++ K + I + G Sbjct: 63 VQLIGKMVSLETITSGKKKRLVAKFIDD-TGQMELVWFKFTKWQVEKFQKELHQPILIYG 121 Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVN------FPLIEAVYSLPT-GLSVDLFKKIIVEALS 180 K + MVHP ++++ FP+ + L G++ + +KII++ Sbjct: 122 KPNLFNSVFSMVHPE--IEDAENAKTMPLGLFPVYPSTELLAKKGITNRMMQKIILQLFQ 179 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 ++ E + L+ + S A+A+ IH P+ A++ A RL ++EL Q+++ Sbjct: 180 ESIMIEENLSTSLVDQLKLISRAKAYAQIHFPKNAEELR---QAEFRLKFEELFFFQLSM 236 Query: 241 LLMR---KQFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLR 296 + + +Q K P G+ N IPF T +Q+ +K+I +D+ Q +M R Sbjct: 237 FVKKIGHQQTNKSQAFP--RVGEYFNTFYNNYIPFELTNAQKRVVKEIYRDLRQHKQMNR 294 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 +LQGDVGSGKT+VAL++M A++ QA ++AP ILAQQHY+ + +Y + + V +IT Sbjct: 295 LLQGDVGSGKTMVALLSMLLAIDNNFQATLIAPTEILAQQHYQSVVEYLGDLDVKVALIT 354 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G+ ++ R+ E + G+ +I+IGTHA+ +D++Q+ L L I+DEQHRFGV QR K + Sbjct: 355 GSTTKSQRQPIHEGLLSGEINILIGTHAILEDTVQFNNLGLAIIDEQHRFGVAQRAKFWR 414 Query: 417 KATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 KA P H+L+MTATPIPRTL ++ GD+DIS I E P GRKPI+T+ ++ L Sbjct: 415 KAKQPPHILVMTATPIPRTLAMSLYGDLDISVIDELPKGRKPIQTIHKTDAHRLQLFHFL 474 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKES 532 K + +G++ Y + P IEE K+ + +++ + S+ F ++ I+HGR +K+ Sbjct: 475 KKEIDKGRQVYIVYPLIEESKKLELKDLMDGYESITREFPLPKYAVGIVHGRQKPAEKDY 534 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 M F G +L+ATTVIEVG++V +AS+++IENAE FGL+QLHQLRGRVGRG E S C Sbjct: 535 EMQRFIKGETHILVATTVIEVGVNVPNASVMVIENAERFGLSQLHQLRGRVGRGAEQSYC 594 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 IL+ H L++ SY R+S + T DGF IAE DL+ R G+++G +QSG+ F +A Sbjct: 595 ILMTHGQLNETSYQRISTMCQTNDGFQIAEVDLQLRGPGDLMGTQQSGVLDFKLASLTKD 654 Query: 653 DSLLEIARKDAKHILTQDPDL 673 L+E +R+ A +L +DP L Sbjct: 655 RQLIEWSRQAADRLLKEDPRL 675 >gi|240122804|ref|ZP_04735760.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID332] gi|268681416|ref|ZP_06148278.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID332] gi|268621700|gb|EEZ54100.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID332] Length = 680 Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust. Identities = 228/600 (38%), Positives = 341/600 (56%), Gaps = 7/600 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H + R+ + + DG+G + L F + G++I G+IK M Sbjct: 65 HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP + L VY GL+ ++II AL P L + + LL + Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182 Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 P +AE+ ++H+P + + T PA +RL +DELLA Q+++ L R++ Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGTAAA 242 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + +G + Q + + +PF+ T +QE + +I +DM+Q + M R+LQGDVGSGKT+VA ++ Sbjct: 243 LRGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSA 302 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A+E+G Q +MAP ILA+QH+ K++ + I V + G++ + + +A ++A G Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVCLFGSLRKKAKDEAKAKLADG 362 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 I +GTHALF D + ++ L L IVDEQHRFGV QRL L K H L+M+ATPIPRT Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLSIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I E P GR PIKT ++ R EV + +G++AYW+CP IEE Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEE 482 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ E L +I ++HGRM +K VM F G +L+ATTVIEV Sbjct: 483 SETLQLQTAAETLARLQTALPEPNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEV 542 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +A++++IE+AE GLAQLHQLRGRVGRG S C+LL+ PL + + RL V+ Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA +DL R GE LG +QSG+P A+ E LLE AR+ A ++ Q+P++ Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 662 >gi|59800577|ref|YP_207289.1| hypothetical protein NGO0117 [Neisseria gonorrhoeae FA 1090] gi|194097746|ref|YP_002000787.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae NCCP11945] gi|239998249|ref|ZP_04718173.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae 35/02] gi|240015874|ref|ZP_04722414.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae FA6140] gi|240114966|ref|ZP_04729028.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID18] gi|240117250|ref|ZP_04731312.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID1] gi|240124998|ref|ZP_04737884.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae SK-92-679] gi|260441218|ref|ZP_05795034.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae DGI2] gi|268594104|ref|ZP_06128271.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae 35/02] gi|268600632|ref|ZP_06134799.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID18] gi|268602945|ref|ZP_06137112.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID1] gi|268683583|ref|ZP_06150445.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae SK-92-679] gi|291044555|ref|ZP_06570264.1| ATP-dependent DNA helicase recG [Neisseria gonorrhoeae DGI2] gi|59717472|gb|AAW88877.1| putative DNA helicase [Neisseria gonorrhoeae FA 1090] gi|193933036|gb|ACF28860.1| RecG [Neisseria gonorrhoeae NCCP11945] gi|268547493|gb|EEZ42911.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae 35/02] gi|268584763|gb|EEZ49439.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID18] gi|268587076|gb|EEZ51752.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID1] gi|268623867|gb|EEZ56267.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae SK-92-679] gi|291011449|gb|EFE03445.1| ATP-dependent DNA helicase recG [Neisseria gonorrhoeae DGI2] gi|317163533|gb|ADV07074.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae TCDC-NG08107] Length = 680 Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust. Identities = 228/600 (38%), Positives = 341/600 (56%), Gaps = 7/600 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H + R+ + + DG+G + L F + G++I G+IK M Sbjct: 65 HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP + L VY GL+ ++II AL P L + + LL + Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLGRLK 182 Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 P +AE+ ++H+P + + T PA +RL +DELLA Q+++ L R++ Sbjct: 183 LPRLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGTAAA 242 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + +G + Q + + +PF+ T +QE + +I +DM+Q + M R+LQGDVGSGKT+VA ++ Sbjct: 243 LRGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSA 302 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A+E+G Q +MAP ILA+QH+ K++ + I V + G++ + + +A ++A G Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVCLFGSLRKKAKDEAKAKLADG 362 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 I +GTHALF D + ++ L L IVDEQHRFGV QRL L K H L+M+ATPIPRT Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLSIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I E P GR PIKT ++ R EV + +G++AYW+CP IEE Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEE 482 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ E L +I ++HGRM +K VM F G +L+ATTVIEV Sbjct: 483 SETLQLQTAAETLARLQTALPEPNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEV 542 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +A++++IE+AE GLAQLHQLRGRVGRG S C+LL+ PL + + RL V+ Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAGESVCVLLFAEPLGELAKARLKVIYE 602 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA +DL R GE LG +QSG+P A+ E LLE AR+ A ++ Q+P++ Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 662 >gi|147678092|ref|YP_001212307.1| ATP-dependent DNA helicase RecG [Pelotomaculum thermopropionicum SI] gi|146274189|dbj|BAF59938.1| RecG-like helicase [Pelotomaculum thermopropionicum SI] Length = 690 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 236/676 (34%), Positives = 375/676 (55%), Gaps = 23/676 (3%) Query: 7 NPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 N FA P+ + VG++ + L K+ G A DLL++ P + DR + Sbjct: 3 NEFFAKPVQYLKMVGQRRASALQKL---GIAT---VKDLLYHFPRRYDDRTVLRPAWACA 56 Query: 66 EERIVTITGYISQHSSFQLQKRRPY---KILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122 + + T+ G + ++ L+ RR K+ L+DG+G ++F +K G + Sbjct: 57 QGEVATVGGTVL--AAQDLKPRRGLTITKLALHDGSGTFYAVWF--NQPFIKKNLPPGTR 112 Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQD-VNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + VTGK++K + + Y + +D ++ + VY L L+ + + ++ AL Sbjct: 113 VFVTGKVEKGYGAVTVAVEEYEADDGRDRLSTGRLVPVYPLAGRLTQRMLRAMVKSALDE 172 Query: 182 LPVL-PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 +++ + LL+K + P + A + +H P ++ E AR R ++EL Q+AL Sbjct: 173 AKGKEADFLPESLLKKFNLPCLGTALSAVHFP---QNMEEAGAARRRFIFEELFLFQLAL 229 Query: 241 LLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 + RK + + EGK+ Q ++P+ T QE K+I DM M R+LQ Sbjct: 230 AMRRKDISGRRKLHTYLPEGKLTQAFKSSLPYRLTGEQEKVWKEISNDMDSPVPMHRLLQ 289 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG+GKT+++ +A+ AVE+G Q +MAP ILA+QHY ++ Y + ++TG Sbjct: 290 GDVGAGKTVISTLALLKAVESGLQGALMAPTEILAEQHYLGMRNYLGPIGVEAGLLTGGT 349 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + R++ LERI G +++GTHAL Q+ + + L LV+VDEQHRFGV+QR L K Sbjct: 350 GRKKRKELLERIRSGDLKLVVGTHALLQEGVDFKNLGLVVVDEQHRFGVRQRATLQNKGL 409 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 P L+MTATPIPRT+ +T GD+DIS I P GR+P+KT + + + ++ + Sbjct: 410 YPDTLVMTATPIPRTMAMTLYGDLDISIINGLPPGRQPVKTYAVVPAALPKAYHLVREQV 469 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSL--HEHFTSSIAIIHGRMSDIDKESVMDSF 537 G++AY +CP +EE ++ + + VE L E + ++HG+M +K+ VM SF Sbjct: 470 RRGRQAYIVCPLVEESEKVDLEAAVELAEKLAAGEFRDCRLGLLHGQMKAEEKDKVMTSF 529 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 + G ++L+ TTVIEVG+DV +A+++II +A+ FGLAQLHQLRGRVGRG S CIL+ Sbjct: 530 RQGEIQILVTTTVIEVGVDVPNATVMIILDADRFGLAQLHQLRGRVGRGSHQSYCILVAD 589 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 P ++ RL + DGF +AEEDL+ R GE G +QSG+P+F IA +L+ Sbjct: 590 PK-TEEGRARLKAMVRISDGFALAEEDLRLRGPGEFCGTRQSGLPEFKIADLLRDWKVLQ 648 Query: 658 IARKDAKHILTQDPDL 673 AR++A + +DP L Sbjct: 649 AARQEALAWVEEDPHL 664 >gi|301794675|emb|CBW37126.1| ATP-dependent DNA helicase [Streptococcus pneumoniae INV104] Length = 671 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 244/674 (36%), Positives = 386/674 (57%), Gaps = 30/674 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKIK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL K S +A +H P KD A R+ ++EL Q+ L +++ + Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQMLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ +N + + ++PF+ T++QE ++++IL DM + M R+LQGDVGSG Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QA +M P ILA+QH+E ++ N ++ ++TG++ A +R Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T I ++ +V+ L+ + +G +A Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + +A++HGRM +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + + Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642 Query: 664 KHILT-----QDPD 672 +I + +DP+ Sbjct: 643 SYISSIEAWQEDPE 656 >gi|254670282|emb|CBA05583.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha153] Length = 680 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 230/600 (38%), Positives = 343/600 (57%), Gaps = 7/600 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H + R+ + + DG+G + L F + G++I G+IK M Sbjct: 65 HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP + L VY GL+ ++II AL P L + + LL + Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182 Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 P +AE+ ++H+P + + T PA +RL +DELLA Q+++ L R++ Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTFPAWQRLKFDELLAQQLSMRLARQKRIGGTAAA 242 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + +G + Q + +PF+ T +QE A+ +I DM+Q + M R+LQGDVGSGKT+VA ++ Sbjct: 243 LRGDGTLTQALHHALPFALTDAQEKAVSEICHDMAQTHPMHRLLQGDVGSGKTIVAALSA 302 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A+E+G Q +MAP ILA+QH+ K++ + I V + G++ + + +A ++A G Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 I +GTHALF D +++ L LVIVDEQHRFGV QRL L K H L+M+ATPIPRT Sbjct: 363 TVKIAVGTHALFSDGVEFQNLGLVIVDEQHRFGVAQRLALKNKGRDVHQLMMSATPIPRT 422 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I E P GR PIKT ++ R EV + + +G++AYW+CP IEE Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVESFVLNICRKGQQAYWVCPLIEE 482 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ E L +I ++HGRM +K VM F +G +L+ATTVIEV Sbjct: 483 SETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGELNVLVATTVIEV 542 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +A++++IE+AE GLAQLHQLRGRVGRG S C+LL+ PL + + RL V+ Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA +DL R GE LG +QSG+P A+ E LLE AR+ A ++ Q+P++ Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQAREIAPILIEQNPEI 662 >gi|149006640|ref|ZP_01830339.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP18-BS74] gi|307127909|ref|YP_003879940.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae 670-6B] gi|147761938|gb|EDK68901.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP18-BS74] gi|306484971|gb|ADM91840.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae 670-6B] gi|332072867|gb|EGI83348.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA17545] Length = 671 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 244/674 (36%), Positives = 386/674 (57%), Gaps = 30/674 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKASL---NGMKVLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL K S +A +H P KD A R+ ++EL Q+ L +++ + Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQMLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ +N + + ++PF+ T++QE ++++IL DM + M R+LQGDVGSG Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QA +M P ILA+QH+E ++ N ++ ++TG++ A +R Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T I ++ +V+ L+ + +G +A Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + +A++HGRM +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + + Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642 Query: 664 KHILT-----QDPD 672 +I + +DP+ Sbjct: 643 SYISSIETWQEDPE 656 >gi|116516080|ref|YP_816963.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae D39] gi|116076656|gb|ABJ54376.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae D39] Length = 671 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 244/674 (36%), Positives = 385/674 (57%), Gaps = 30/674 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL K S +A +H P KD A R+ ++EL Q+ L ++ + Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ +N + + ++PF+ T++QE ++++IL DM + M R+LQGDVGSG Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKASLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QA +M P ILA+QH+E ++ N ++ ++TG++ A +R Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T I ++ +V+ L+ + +G +A Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + +A++HGRM +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + + Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642 Query: 664 KHILT-----QDPD 672 +I + +DP+ Sbjct: 643 SYISSIEAWQEDPE 656 >gi|205373335|ref|ZP_03226139.1| ATP-dependent DNA helicase recG [Bacillus coahuilensis m4-4] Length = 591 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 229/577 (39%), Positives = 348/577 (60%), Gaps = 38/577 (6%) Query: 113 LKNVFFE----------GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162 +K VFF G + +TGK K + I + H F + + E +YSL Sbjct: 1 MKAVFFNQPYAKSKLILGESVIITGKWDKNRQEITVNH----FSTNDNQEKKDYEPIYSL 56 Query: 163 PTGLSVDLFKKIIVEALSRL------PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216 L F+K + AL P+ PE +LQK S E F I+H P + Sbjct: 57 RGSLKNHTFRKFVALALKEYGDKVVDPLPPE-----ILQKYRLLSKKETFQILHFPGSEE 111 Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV---EGKIAQKILRNIPFSP 273 D + R R Y+E L Q+ + +RK F+++ I++ EGK+ + + ++PF Sbjct: 112 DMK---QGRRRYVYEEFLLFQLKMQSLRK-FQRDHSTGISILYDEGKV-NEFITSLPFPL 166 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T +Q+ + +IL D RM R+LQGDVGSGKT+VA I++ A++ AG Q +M P IL Sbjct: 167 TVAQKRVVHEILTDCQSPARMNRLLQGDVGSGKTVVAAISLYASITAGFQGALMVPTEIL 226 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QH E + K ++T + V ++T ++ R+ L++++ G+ I++GTHAL QD + ++ Sbjct: 227 AEQHAESLAKMFEHTDVTVALLTSSIKGKKRKVLLDQLSIGRIDILVGTHALIQDEVNFH 286 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 +L LVI DEQHRFGV QR L +K P+VL MTATPIPRTL +T G++D+S I E PA Sbjct: 287 QLGLVITDEQHRFGVAQRKVLREKGENPNVLFMTATPIPRTLAITVFGEMDVSTIDELPA 346 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 GRKPI+T +D V+ LK +S+G++AY I P IEE + + ++ ++ + L + Sbjct: 347 GRKPIETYWAKEEMLDRVLHFLKKEISKGRQAYVITPLIEESDKLDVQNAIDVHSQLSLY 406 Query: 514 FTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 F S+ + ++HGR+ +KE VM F + +L++TTV+EVG++V +A+++II +AE F Sbjct: 407 FGSNVKVGLMHGRLHPTEKEQVMKEFSEHSVDILVSTTVVEVGVNVPNATMMIIYDAERF 466 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631 GL+QLHQLRGRVGRGEE S CILL +P + R++++ T DGF+++E+DL+ R G Sbjct: 467 GLSQLHQLRGRVGRGEEQSYCILLANPK-TDVGKERMTIMTETTDGFVLSEKDLELRGPG 525 Query: 632 EILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHIL 667 + G KQSGMP+F +A +HD +LEIAR DAK ++ Sbjct: 526 DFFGRKQSGMPEFKMADM-VHDYRVLEIARDDAKALI 561 >gi|225568064|ref|ZP_03777089.1| hypothetical protein CLOHYLEM_04137 [Clostridium hylemonae DSM 15053] gi|225163160|gb|EEG75779.1| hypothetical protein CLOHYLEM_04137 [Clostridium hylemonae DSM 15053] Length = 684 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 240/641 (37%), Positives = 362/641 (56%), Gaps = 22/641 (3%) Query: 43 DLLFYHPSSFIDRHYRP-KISEISEERIVTITGYISQHSSFQLQKRRPYK---ILLNDGT 98 DL+ Y+P + D + P ISE E +VT+TG I Q+ R + I + D T Sbjct: 39 DLVRYYPRGY-DVYDDPVPISEAEEGSVVTVTGAI--FGRVQVSGTRNMQVTTIYVKDIT 95 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL--I 156 G + +++F + L+N +G IT+ G+I K+ I+M HP IF+ S L + Sbjct: 96 GTLKVIWF--RMPFLRNTLAKGGVITLRGRIVNRKSGIVMEHPE-IFYPSAKYEEKLHTL 152 Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216 + VY+L GLS + K + +AL L + E + ++ K A IH P + Sbjct: 153 QPVYALTAGLSNNAVMKAVQQALMELDLTKETLPDEIRLKYKLAEYNYAIRGIHFP---E 209 Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG-IPINVEGKIAQKILRNIPFSPTK 275 D E RERL ++E L +AL ++ +KE P+ + A L +P+ T Sbjct: 210 DKEVFYHVRERLVFEEFLEFILALRRLKDSNEKEQNHYPVKKAPETA-AFLSQLPYELTG 268 Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 +Q+ ++I DM+ + M R++QGDVGSGKT+VA++A+ +G Q +MAP +LA+ Sbjct: 269 AQKKVAEEISADMAGASAMSRLVQGDVGSGKTIVAVLALMDTAFSGYQGALMAPTEVLAR 328 Query: 336 QHYEFIKK-YTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 QHYE I ++Q ++ E++TG+M +R+A RI G+ II+GTHAL Q+ + Y Sbjct: 329 QHYESITNLFSQYGIRLGAELLTGSMTAKEKREAYGRIESGEVQIIVGTHALIQEKVNYK 388 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L LV+ DEQHRFGV+QR +K PH+L+M+ATPIPRTL + GD+DIS I E PA Sbjct: 389 NLALVVTDEQHRFGVKQREAFARKGGVPHILVMSATPIPRTLAIILYGDLDISVIDELPA 448 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 R PIK ++ +K + EG++ Y ICP +EE + +V++ L + Sbjct: 449 NRLPIKNCVVDTGYRKTAYTFMKNQVKEGRQCYVICPMVEESEHLEVENVMDYAQMLQDE 508 Query: 514 FTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 + +A +HGRM +K+ +M+ F ++L++TTVIEVGIDV +A+++++ENAE F Sbjct: 509 LGEAVGVACLHGRMKQAEKDDIMERFGRNEIQVLVSTTVIEVGIDVPNATVMLVENAERF 568 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631 GLAQLHQLRGRVGRG S CI + SK + RL +L + DGF IA EDLK R G Sbjct: 569 GLAQLHQLRGRVGRGRHQSYCIFM-SASRSKETKERLDILNKSNDGFKIASEDLKLRGPG 627 Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 ++ GI+QSG+ F + LL+ A + A +L + + Sbjct: 628 DLFGIRQSGLMDFRLGDVFQDAQLLKKANEAADLLLNNEKE 668 >gi|219669851|ref|YP_002460286.1| ATP-dependent DNA helicase RecG [Desulfitobacterium hafniense DCB-2] gi|219540111|gb|ACL21850.1| ATP-dependent DNA helicase RecG [Desulfitobacterium hafniense DCB-2] Length = 805 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 247/663 (37%), Positives = 384/663 (57%), Gaps = 26/663 (3%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L +GVG + + L++I DL FY P + DR + I E+ + + ++ Sbjct: 145 LQFLKGVGPERAKLLAQI------GLHTVKDLFFYFPRRYEDRSLQ-SIGELKDGELASV 197 Query: 73 TGYISQHSSFQLQKRRPYKILLN-DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 G + + Q+ + + + L+ + G + ++ +T +LK + G + VTGK++ Sbjct: 198 AGKVV---AGQIARGKLKVVKLSIEQDGRLVYAVWFNQTYILKQ-YPVGTSVIVTGKVR- 252 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL-PEWIE 190 + R+ + I + I VYS LS + + I+ L + P L PE++ Sbjct: 253 WQQRVPEIQATDI-QKAGAAQPAAILPVYSETARLSSKVIRTIVQGVLGQAPELFPEFLP 311 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 + + K + A+A+ IH PR F ARERL ++E+L Q+++ +R ++E Sbjct: 312 PE--EGKGWVPRAQAYQEIHFPR---TFHSLGQARERLVFEEVLFLQLSVARLRSGVQRE 366 Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310 + + Q+ L ++PF T++Q+ I++I +DM+ M R++QGDVGSGKT VA Sbjct: 367 NSPQLKSGESLVQRFLASLPFELTQAQKRVIQEIFRDMANTQGMARLVQGDVGSGKTAVA 426 Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370 + A+ AV +G Q +MAP ILA QHY+ + + + V + G+ ++ R K L Sbjct: 427 MAALLMAVGSGYQGAMMAPTEILALQHYQSLAAAFKPLGLHVVCLLGSQTKSERDKILTE 486 Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430 IA+G+AH+I+GTHAL Q+S+Q++ L L I DEQHRFGV+QR L K PHVL++TATP Sbjct: 487 IAYGKAHVIVGTHALIQESVQFHSLGLAITDEQHRFGVKQRTSLQTKGENPHVLVLTATP 546 Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490 IPRTL LT GD+ +S + E P GRKPI T + + + ++ + +G++ Y +CP Sbjct: 547 IPRTLALTLYGDLQLSALDEMPQGRKPIMTRKLTERGRPSLEKFMEEQMEKGRQIYVVCP 606 Query: 491 QIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549 +EE + + S ERF SL E F + ++++HGRM + KE +M +F+ G +L++TT Sbjct: 607 LVEESENVDLISATERFQSLLERFPNRRVSLLHGRMKGVQKEEIMTAFQKGEVDILVSTT 666 Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609 V+EVG++V +A++++IE AE FGLAQLHQLRGRVGRG E S C LL +KNS RL Sbjct: 667 VVEVGVNVPNATVMVIEGAERFGLAQLHQLRGRVGRGSEQSYCFLLSD---AKNS-RRLE 722 Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669 VL T+DGF IAEEDLK R GE+LG +Q G+ + +A L+E A + A+ +LT Sbjct: 723 VLCETQDGFKIAEEDLKIRGAGELLGTRQHGVMELRLADLSRDGRLVEQAYQLAQKVLTH 782 Query: 670 DPD 672 PD Sbjct: 783 -PD 784 >gi|332363341|gb|EGJ41126.1| DNA helicase RecG [Streptococcus sanguinis SK49] Length = 671 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 241/671 (35%), Positives = 384/671 (57%), Gaps = 30/671 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL+ GVG K + +K+ ET DLL Y P + D + + ++ + Sbjct: 3 LHQPLTVLPGVGPKSAEKFAKL-----GLET-LQDLLLYFPFRYEDFKSK-NVLDLEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + ++ Q + ++ GE+ L + L + G I V GK Sbjct: 56 KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184 K K + + + +D ++ VY L G+S V L K + L L Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQANLVKLIKTAFDQGLDLL-- 166 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 L E + + LL++ S EA +H P+ D++ A R+ ++EL Q+ L +++ Sbjct: 167 LEENLPQSLLERYQLVSRVEAVRAMHFPKDLADYK---QALRRVKFEELFYFQMQLQVLK 223 Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 ++ K G+ I+ + + +++PF T +QE ++ +ILQD+ M R+LQGDVG Sbjct: 224 RETKAVSNGLKIDWQSDAVAEKKQSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVG 283 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA +AM A AG Q+ +M P ILA+QH++ + + ++ + ++TG M Sbjct: 284 SGKTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELNLALLTGGMKATE 341 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L I +GQ +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR L +K P V Sbjct: 342 RRETLAAIENGQVDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDV 401 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T + ++ V++ LK L +G Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLGVVLDWLKKELHKGA 461 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541 +AY+I P IEE + + ++ + L +F + +A++HG+M +KE++M FK G Sbjct: 462 QAYFISPLIEESEALDLKNAIALEGELTAYFGHQAQVALLHGKMKSEEKEAIMQDFKEGR 521 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S +L+ +P + Sbjct: 522 TDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-T 580 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 ++ +R+ ++ DGFL+AEEDLK R GEI G +QSG+P+F +A +LE ARK Sbjct: 581 ESGKSRMKIMTEMTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640 Query: 662 DAKHILTQDPD 672 A I T DP+ Sbjct: 641 VASQI-TADPN 650 >gi|171464093|ref|YP_001798206.1| ATP-dependent DNA helicase RecG [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193631|gb|ACB44592.1| ATP-dependent DNA helicase RecG [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 695 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 238/619 (38%), Positives = 358/619 (57%), Gaps = 39/619 (6%) Query: 87 RRPYKILLNDGTGEITLLF--FYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI 144 RR + + D T + L F FY + V G + V G++++ MVHP + Sbjct: 66 RRQMVVTIEDETETLNLRFLNFYPSQQKQMAV---GVNVRVRGEVREGFQGPEMVHP-IV 121 Query: 145 FHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEAL-------SRLPVLPEWIEKDLLQK 196 + D P + VY +S + +K + +AL S LP+ + +LL Sbjct: 122 RAVAPDAPLPTSLTPVYPASVSVSQTVIRKAVNQALRDPSLQKSLAESLPKKLMSELLPS 181 Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252 +PS+ A +H P + + T PA R+ ++ELLA QI+L +E Sbjct: 182 NDWPSLQSAIKYLHQPPADANTQSLLDRTHPAWRRVQFEELLAQQISLKRAHA-IHRERQ 240 Query: 253 IP-----------INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 P + + + +L+ +PF T +Q+ +I +D+S+ M R+LQGD Sbjct: 241 APSFEKMKDEGKGKGGKQGLEEGLLKVLPFKLTNAQDRVWSEISKDLSKSFPMNRLLQGD 300 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+V+ +A A A++ G QA IMAP ILA+QHY +K++ + + + ++G++ Sbjct: 301 VGSGKTVVSALAAARAMDHGYQAAIMAPTEILAEQHYLKMKEWFEPLGVRIAWLSGSLKA 360 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 +R A I +GQA +IIGTHAL Q+++ + KL L ++DEQHRFGV+QRL++ Q+ + Sbjct: 361 KEKRLAQGEIENGQAQLIIGTHALIQENVCFAKLGLAVIDEQHRFGVRQRLEIQQRVGSE 420 Query: 422 ----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 H L+M+ATPIPRTL +T D+D+S I E P GRKPI T ++ +R DEVI L+ Sbjct: 421 LFYCHQLMMSATPIPRTLAMTYYADLDVSVIDELPPGRKPIATKVVKASRRDEVIGGLRS 480 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 LS+G +AYW+CP IEE + ++ E F L + + +IHGR+ +K +VM + Sbjct: 481 WLSKGLQAYWVCPLIEESEALQLQTATESFEQLTQVLPDFKVGLIHGRLKAEEKAAVMAA 540 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK +LL+ATTVIEVG++V +A++++IE+AEHFG AQ+HQLRGRVGRG S CIL+Y Sbjct: 541 FKANEIQLLVATTVIEVGVNVPNAALMVIEHAEHFGYAQIHQLRGRVGRGSAESVCILMY 600 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG--MPKFLIAQPELHDS 654 PLS + RL L+ T DGF+IAE DL R GE+LG KQSG M +F+ Q + Sbjct: 601 AEPLSMAAKERLQTLRETSDGFVIAERDLLLRGPGELLGAKQSGDAMLRFVDLQRDAW-- 658 Query: 655 LLEIARKDAKHILTQDPDL 673 L+E+A++ A +L + DL Sbjct: 659 LIELAQQAADRLLAEHADL 677 >gi|323127969|gb|ADX25266.1| ATP-dependent DNA helicase RecG [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 671 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 246/668 (36%), Positives = 379/668 (56%), Gaps = 26/668 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L AP++ +G+G K + K+ + DLL Y+P + D + + + E+ Sbjct: 3 LTAPIAHLKGLGPKSAEKFQKL------GIYQIEDLLLYYPFRYEDFKSKSVLELLDGEK 56 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 V ITG + + Q + ++ GE+ + + L++ G ++ + GK Sbjct: 57 AV-ITGTLVTPPNVQYYGFKRNRLTFKIKQGEVVIGVSFFNQPYLQDKLTLGNEVAIFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186 + K + + + ++ VY + G+S K I A L L Sbjct: 116 WDQKKTALTGMKLLMTVEDD-------LQPVYHVAQGVSQTALIKAIKAAFDSGALDELK 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E I LL+K EA +H P+ D++ A R+ ++EL Q+ L ++++ Sbjct: 169 ENIPDSLLEKYRLMPRQEAVYAMHFPKTLTDYK---QALRRIKFEELFYFQLRLQVLKQA 225 Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + E G+ I + + + +PF T++QE ++++IL+DM M R+LQGDVGSG Sbjct: 226 NRSENSGLAIAFDQEKINHQIAALPFPLTQAQERSLQEILRDMRSGAHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT++A +AM AA AG Q+ +M P ILA+QHY+ + K N I I+T M +R Sbjct: 286 KTVIASLAMYAAYTAGLQSALMVPTEILAEQHYDSLIKLFPNLSIA--ILTSGMKAPEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 AL IA G +I+GTHAL QD++QY+KL LVI DEQHRFGV+QR +K P VL+ Sbjct: 344 TALAAIADGSVDMIVGTHALIQDAVQYHKLGLVITDEQHRFGVKQRRIFREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ G++D+S I E PAGRKPI T + ++D V+ +K L +G +A Sbjct: 404 MTATPIPRTLAITAYGEMDVSIIDELPAGRKPIVTRWVKHQQLDTVLAWMKTELEQGAQA 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ V+ L +F +S IA++HG+M +KE++M +FK Sbjct: 464 YVISPLIEESEALDLKNAVDLEAELKAYFKASARIALMHGKMKADEKEAIMQAFKAQEID 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 LL++TTVIEVG++V +ASI++I +A+ FGL+QLHQLRGRVGRG + S IL+ +P +++ Sbjct: 524 LLVSTTVIEVGVNVPNASIMVIMDADRFGLSQLHQLRGRVGRGHKQSYAILVANPK-TES 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R++++ T DGF++AE DLK R GEI G +QSG+P+F A ++LE ARK A Sbjct: 583 GKERMAIMTTTNDGFVLAEADLKMRGAGEIFGTRQSGLPEFKTADIVEDYAILEEARKVA 642 Query: 664 KHILTQDP 671 I T +P Sbjct: 643 TMI-TSEP 649 >gi|116070692|ref|ZP_01467961.1| ATP-dependent DNA helicase RecG [Synechococcus sp. BL107] gi|116066097|gb|EAU71854.1| ATP-dependent DNA helicase RecG [Synechococcus sp. BL107] Length = 773 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 248/714 (34%), Positives = 397/714 (55%), Gaps = 53/714 (7%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 RPS L +P++ +GVG K + L+ + + R ++P +D +I Sbjct: 69 RPSL--DLESPITRIKGVGPKLASRLASLNLLLVKDLLR------HYPRDHVDYSSMRRI 120 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEMLKNVF 117 + TI I + + F + R P ++ L D TG + + F + Sbjct: 121 EALVAGETATIVATIRRCNGF-VSPRNPNLAILELQLQDPTGRLKVTRFLAGKRFSSQAY 179 Query: 118 FEGRK--------ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA-------VYSL 162 +G++ + V+G +K + P + ++ + P+ A VY+L Sbjct: 180 LKGQQRLYPAGASVAVSGLVKDGAYGLSFQDP--LIEVLENPSSPVKSASIGRLLPVYAL 237 Query: 163 PTGLSVDLFKKIIVEALSRLPVLPEWIE---KDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 G+ D F+ +I + L P+ +W E + L Q S++EA +H P KD Sbjct: 238 TEGVGADRFRGLIEQVL---PLTEQWTEPLPEALRQTFDLLSVSEALQALHAP---KDRT 291 Query: 220 WTSPARERLAYDELLAGQIALLL----MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275 R RL +DE L Q+ LL +R + E+G+ + +G + Q + F T+ Sbjct: 292 TLDRGRHRLVFDEFLLLQLGLLRRRQALRSRPGPELGLLPSTQG-LVQDFRDLLSFQFTE 350 Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 +Q+ + +I D++Q M R++QGDVGSGKT+VA+ A+ + + +G Q +MAP +LA+ Sbjct: 351 AQQRVLHEIEADLAQSKPMARLVQGDVGSGKTVVAIAALLSTIASGWQGALMAPTEVLAE 410 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 QH+ + + I VE++TG+ P+ RR+ L+ +A G +++GTHAL +D + + +L Sbjct: 411 QHHRNLCHWLPQLHITVELLTGSTPRPRRRQLLDDLASGSLKLLVGTHALLEDPVVFERL 470 Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 LV+VDEQHRFGV QR +L K PH+L MTATPIPRTL L+ GD+D+S+I E P GR Sbjct: 471 GLVVVDEQHRFGVHQRDRLLNKGLQPHLLTMTATPIPRTLALSVHGDLDVSQIDELPPGR 530 Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL-HEHF 514 PIKT ++ + ++ ++ +S+G++AY + P +EE ++ RS VE L E F Sbjct: 531 TPIKTAMLSAGQREKAYALIRDEVSKGQRAYVVLPLVEESEKLELRSAVEVHAELVSEVF 590 Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 + ++HGR+S ++K+ V+ SF +G C++L++TTV+EVG+DV +AS+++I++AE FGL Sbjct: 591 PDLQVGLLHGRLSSVEKQEVLASFSSGACQVLVSTTVVEVGVDVPEASVMMIDHAERFGL 650 Query: 574 AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631 AQLHQLRGRVGRG S C+L+ PL++ RL VL + DGF IAE DL+ R G Sbjct: 651 AQLHQLRGRVGRGAAASHCLLINGSSNPLARQ---RLDVLVRSTDGFEIAEMDLRLRGPG 707 Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685 ++LG +QSG+P +A ++LE AR A+ +L DP+L R +R LL Sbjct: 708 QVLGTRQSGLPDLALASLADDAAVLEDARTAAQDLLRDDPNLE--RCPQLRALL 759 >gi|251783245|ref|YP_002997550.1| ATP-dependent DNA helicase RecG [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391877|dbj|BAH82336.1| ATP-dependent DNA helicase RecG [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 676 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 246/668 (36%), Positives = 379/668 (56%), Gaps = 26/668 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L AP++ +G+G K + K+ + DLL Y+P + D + + + E+ Sbjct: 8 LTAPIAHLKGLGPKSAEKFQKL------GIYQIEDLLLYYPFRYEDFKSKSVLELLDGEK 61 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 V ITG + + Q + ++ GE+ + + L++ G ++ + GK Sbjct: 62 AV-ITGTLVTPPNVQYYGFKRNRLTFKIKQGEVVIGVSFFNQPYLQDKLTLGNEVAIFGK 120 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186 + K + + + ++ VY + G+S K I A L L Sbjct: 121 WDQKKTALTGMKLLMTVEDD-------LQPVYHVAQGVSQTALIKAIKAAFDSGALDELK 173 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E I LL+K EA +H P+ D++ A R+ ++EL Q+ L ++++ Sbjct: 174 ENIPDSLLEKYRLMPRQEAVYAMHFPKTLTDYK---QALRRIKFEELFYFQLRLQVLKQA 230 Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + E G+ I + + + +PF T++QE ++++IL+DM M R+LQGDVGSG Sbjct: 231 NRSENSGLAIAFDQEKINHQIAALPFPLTQAQERSLQEILRDMRSGAHMNRLLQGDVGSG 290 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT++A +AM AA AG Q+ +M P ILA+QHY+ + K N I I+T M +R Sbjct: 291 KTVIASLAMYAAYTAGLQSALMVPTEILAEQHYDSLIKLFPNLSIA--ILTSGMKAPEKR 348 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 AL IA G +I+GTHAL QD++QY+KL LVI DEQHRFGV+QR +K P VL+ Sbjct: 349 TALAAIADGSVDMIVGTHALIQDAVQYHKLGLVITDEQHRFGVKQRRIFREKGDNPDVLM 408 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ G++D+S I E PAGRKPI T + ++D V+ +K L +G +A Sbjct: 409 MTATPIPRTLAITAYGEMDVSIIDELPAGRKPIVTRWVKHQQLDTVLAWMKTELEQGAQA 468 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ V+ L +F +S IA++HG+M +KE++M +FK Sbjct: 469 YVISPLIEESEALDLKNAVDLEAELKAYFKASARIALMHGKMKADEKEAIMQAFKAQEID 528 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 LL++TTVIEVG++V +ASI++I +A+ FGL+QLHQLRGRVGRG + S IL+ +P +++ Sbjct: 529 LLVSTTVIEVGVNVPNASIMVIMDADRFGLSQLHQLRGRVGRGHKQSYAILVANPK-TES 587 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R++++ T DGF++AE DLK R GEI G +QSG+P+F A ++LE ARK A Sbjct: 588 GKERMAIMTTTNDGFVLAEADLKMRGAGEIFGTRQSGLPEFKTADIVEDYAILEEARKVA 647 Query: 664 KHILTQDP 671 I T +P Sbjct: 648 TMI-TSEP 654 >gi|323489548|ref|ZP_08094775.1| ATP-dependent DNA helicase RecG [Planococcus donghaensis MPA1U2] gi|323396679|gb|EGA89498.1| ATP-dependent DNA helicase RecG [Planococcus donghaensis MPA1U2] Length = 682 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 245/667 (36%), Positives = 386/667 (57%), Gaps = 29/667 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 ++T +GVGK+ + L ++ ET DL+ P D + ER VT+ Sbjct: 9 VATLKGVGKQAAETLQEM-----KIET-LHDLIMTFPYRHEDFQLKDLADTPHNER-VTV 61 Query: 73 TGYISQHSSFQL----QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 G + S + R ++L+ G I +FF + +K G ITVTGK Sbjct: 62 EGRVESEPSVLFLGKNKSRTQVRVLV--GRHLIKAIFFNQP--YVKAKLHLGEIITVTGK 117 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPE 187 + + ++I V H I + +F E VYSL + F+K++ +AL + + + Sbjct: 118 WDRGR-QVITVSSHTIGPRTNGADF---EPVYSLKGSIHQKTFRKLMRQALDLVKEDIED 173 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247 + K L+ I +A +H P D E AR R Y+ELL Q+ + +RK+ Sbjct: 174 CLPKSLVDTYQLAPIQDALEWVHFP---PDGEKVKQARRRFVYEELLVFQLKMQALRKKN 230 Query: 248 KKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 ++E G I+ + + +K + ++PF T +Q+ + +I +DM + RM R+LQGDVGSGK Sbjct: 231 REEEGGSFIDYDLEQLKKFIESLPFDLTDAQKRVVNEICKDMKEPFRMNRLLQGDVGSGK 290 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366 T+VA IA+ AA AG Q +MAP ILA+QH ++++ + + + ++TG++ R+ Sbjct: 291 TVVAAIALYAAFTAGLQGALMAPTEILAEQHANTLEQWFRPFSLNIALLTGSVKGKKRQL 350 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426 LE++A G+ ++IGTHAL Q +++ KL LVI DEQHRFGV QR L K P VL M Sbjct: 351 ILEQLAAGEIDLLIGTHALIQPEVRFDKLGLVITDEQHRFGVDQRRVLKDKGYNPDVLFM 410 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486 TATPIPRTL +++ G++D+S I E P GRK I+T + +++ R++ L+ G++AY Sbjct: 411 TATPIPRTLAISAFGEMDVSIIDEMPVGRKEIETYWMKKEMFGKIVGRMEKELAAGRQAY 470 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKL 544 ICP IEE + ++++ V+ F L +F ++ ++HGR+ +KE M F G + Sbjct: 471 VICPLIEESDKLDYQNAVDLFQQLAIYFKDRFTVGLMHGRLHPDEKEQTMREFSEGQVDV 530 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 L++TTV+EVG++V +AS ++I +AE FGL+QLHQLRGRVGRG E S C+LL P ++ Sbjct: 531 LVSTTVVEVGVNVPNASFMLIYDAERFGLSQLHQLRGRVGRGSEQSYCVLLADPK-TEIG 589 Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDA 663 R++ + T DGF++AE+DL+ R G+ G KQSG+P+F +A +HD LE ARKDA Sbjct: 590 KERMTTMTETNDGFVLAEKDLQLRGPGDFFGRKQSGIPEFKMADL-IHDYRALEAARKDA 648 Query: 664 KHILTQD 670 + +++ + Sbjct: 649 EKLISSE 655 >gi|295109962|emb|CBL23915.1| ATP-dependent DNA helicase RecG [Ruminococcus obeum A2-162] Length = 681 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 234/678 (34%), Positives = 386/678 (56%), Gaps = 23/678 (3%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L T +GVG+K ++ +T DLL Y+P ++ I+++ E + + Sbjct: 5 LQTLKGVGEKTEKLFFRL----GIYDTE--DLLHYYPRNYDAFEAPVDIADLEEGTVKAV 58 Query: 73 TGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + + S ++ +I+ + D +G++++++F L+ + +G + G++ Sbjct: 59 SAAVC--SGVYVRSAGGKQIITATVADQSGKLSVIWF--NMPYLRTILKKGSTFVLRGRV 114 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 K +NRI M HP + + ++ +Y L +GLS K I + L LP+ E++ Sbjct: 115 IKKQNRIQMEHPEVFTPAAYEEILHSLQPIYGLTSGLSNKTITKTIRQLLENLPMYSEFL 174 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249 +D+ Q+ I A IH P ++ +R+RL +DE L +++ +M+++ ++ Sbjct: 175 SEDIRQRYQLADINYALRTIHFPLSMEEL---LVSRKRLVFDEFLLFILSIQMMKEKNEE 231 Query: 250 EIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 PI + + ++I+ N+P+S T +Q + +I +DMS + M R++QGDVGSGKT+ Sbjct: 232 TPNYFPIQ-KTWVTEQIIENLPYSLTNAQLNTWHEIERDMSGQALMSRLVQGDVGSGKTI 290 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY--TQNTQIIVEIITGNMPQAHRRK 366 +A +AM + E G Q+ +M P +LA+QHY+ + Q ++TG+ +R+ Sbjct: 291 IAFLAMILSCENGYQSALMVPTEVLAKQHYKSFMELLAQQGLDFCTVLLTGSNTAKEKRE 350 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426 +IA G+A IIIGTHAL Q+ + Y L LVI DEQHRFGV+QR L ++ P+VL+M Sbjct: 351 IYAKIASGEAQIIIGTHALIQEKVVYKNLSLVITDEQHRFGVKQRESLAERGNPPNVLVM 410 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486 +ATPIPRTL + GD+DIS I E PA R PIK ++ + + ++ + EG++ Y Sbjct: 411 SATPIPRTLAIILYGDLDISVIDELPARRLPIKNCVVDTSYRPKAYSFIQRQVREGRQIY 470 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKL 544 ICP +EE + + +V++ + + F S I I +HG+M +K +M+ F ++ Sbjct: 471 IICPMVEESEGLDAENVLDYTSKIKSIFPSDIQIEYLHGKMKASEKNKIMERFAANEIQI 530 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 L++TTV+EVG++V +A+++++ENAE FGLAQLHQLRGRVGRGE S CI + S Sbjct: 531 LVSTTVVEVGVNVPNATVMMVENAERFGLAQLHQLRGRVGRGEHQSYCIFVQGNKEDTTS 590 Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 RL +L + DGF IA EDLK R G++ GI+QSG+ +F I S+L+ A + A Sbjct: 591 -KRLEILNKSNDGFYIAGEDLKLRGPGDLFGIRQSGVMEFRIGDIYNDSSILKSASEAAS 649 Query: 665 HILTQDPDLTSVRGQSIR 682 IL+ DPDLT + Q ++ Sbjct: 650 EILSLDPDLTLPQNQLLK 667 >gi|149001989|ref|ZP_01826943.1| N-acetylmannosamine-6-phosphate 2-epimerase [Streptococcus pneumoniae SP14-BS69] gi|147759798|gb|EDK66788.1| N-acetylmannosamine-6-phosphate 2-epimerase [Streptococcus pneumoniae SP14-BS69] Length = 671 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 244/674 (36%), Positives = 385/674 (57%), Gaps = 30/674 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL K S +A +H P KD A R+ ++EL Q+ L +++ + Sbjct: 169 ENLSQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQMLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ +N + + ++PF+ T++QE ++++IL DM + M R+LQGDVGSG Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QA +M P ILA+QH+E ++ N ++ ++TG++ A +R Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T I ++ +V+ L+ + +G +A Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + +A++HGRM +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II A+ FGL+QLHQLRGRVGRG++ S +L+ +P + + Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMAADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642 Query: 664 KHILT-----QDPD 672 +I + +DP+ Sbjct: 643 SYISSIETWQEDPE 656 >gi|332074033|gb|EGI84511.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA41301] Length = 671 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 243/674 (36%), Positives = 385/674 (57%), Gaps = 30/674 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL K S +A +H P KD A R+ ++EL Q+ L ++ + Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ +N + + ++PF+ T++QE ++++IL DM + M R+LQGDVGSG Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKASLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QA +M P ILA+QH+E ++ N ++ ++TG++ A +R Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LE IA G+A +I+GTHAL QD ++Y +L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 EVLETIAKGEADLIVGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T I ++ +V+ L+ + +G +A Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + +A++HGRM +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + + Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642 Query: 664 KHILT-----QDPD 672 +I + +DP+ Sbjct: 643 SYISSIEAWQEDPE 656 >gi|168491421|ref|ZP_02715564.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae CDC0288-04] gi|183574121|gb|EDT94649.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae CDC0288-04] Length = 671 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 244/674 (36%), Positives = 385/674 (57%), Gaps = 30/674 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAANFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL K S +A +H P KD A R+ ++EL Q+ L ++ + Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ +N + + ++PF+ T++QE ++++IL DM + M R+LQGDVGSG Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKASLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QA +M P ILA+QH+E ++ N ++ ++TG++ A +R Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T I ++ +V+ L+ + +G +A Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + +A++HGRM +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + + Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642 Query: 664 KHILT-----QDPD 672 +I + +DP+ Sbjct: 643 SYISSIEAWQEDPE 656 >gi|325696972|gb|EGD38859.1| DNA helicase RecG [Streptococcus sanguinis SK160] Length = 671 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 241/671 (35%), Positives = 383/671 (57%), Gaps = 30/671 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL+ GVG K + +K+ ET DLL Y P + D + + ++ + Sbjct: 3 LHQPLTVLPGVGPKSAEKFAKL-----GLET-LQDLLLYFPFRYEDFKSK-NVLDLEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + ++ Q + ++ GE+ L + L + G I V GK Sbjct: 56 KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184 K K + + + +D ++ VY L G+S V L K + L L Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQANLVKLIKTAFDQGLDLL-- 166 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 L E + + LL++ S EA +H P+ D++ A R+ ++EL Q+ L +++ Sbjct: 167 LEENLPQSLLERYQLVSRVEAVRAMHFPKDLADYK---QALRRVKFEELFYFQMQLQVLK 223 Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 ++ K G+ I+ + + +++PF T +QE ++ +ILQD+ M R+LQGDVG Sbjct: 224 RETKAVSNGLKIDWQSDAVAEKKKSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVG 283 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA +AM A AG Q+ +M P ILA+QH++ + + ++ + ++TG M A Sbjct: 284 SGKTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAE 341 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L I G+ +I+GTHAL Q+ + Y+ L LVI+DEQHRFGV+QR L +K P V Sbjct: 342 RRETLAAIEKGRVDMIVGTHALIQEGVHYHALGLVIIDEQHRFGVEQRRILREKGDNPDV 401 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T + +++ V++ LK L +G Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLKKELHKGA 461 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541 +AY+I P IEE + + ++ + L +F + +A++HG+M +KE++M FK G Sbjct: 462 QAYFISPLIEESEALDLKNAIALEEELTAYFGHQAQVALLHGKMKSEEKEAIMQDFKEGR 521 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S +L+ +P + Sbjct: 522 TDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-T 580 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 ++ R+ ++ T DGFL+AEEDLK R GEI G +QSG+P+F +A +LE ARK Sbjct: 581 ESGKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640 Query: 662 DAKHILTQDPD 672 I T DP+ Sbjct: 641 VTSQI-TADPN 650 >gi|319944239|ref|ZP_08018515.1| DNA helicase RecG [Lautropia mirabilis ATCC 51599] gi|319742534|gb|EFV94945.1| DNA helicase RecG [Lautropia mirabilis ATCC 51599] Length = 769 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 246/714 (34%), Positives = 372/714 (52%), Gaps = 99/714 (13%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK----------RRPYKI 92 DL+ + P + D E R+V I G + SS Q+Q RR ++ Sbjct: 54 DLVLHLPLRYED-----------ETRLVPI-GSLVHGSSAQIQATVTRAEVTRGRRALQV 101 Query: 93 LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN 152 +NDGTGE+ L F + L GR + G+++ MVHP Y S+D Sbjct: 102 WVNDGTGELQLRFLHFYPSQLTQ-LQPGRLVRAYGELRVGLFGREMVHPRYRM-VSEDTP 159 Query: 153 FP-LIEAVYSLPTGLSVDLFKKIIVEALSRL---PVLPEWIEKDLLQKKS---------- 198 P + VY GL ++ I AL+ LP + L+ Sbjct: 160 LPDRLTPVYPTVAGLGQATLRREIDRALADCRWQDTLPPTLLTALMSGSGDGKQASGRPG 219 Query: 199 ----------FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMR 244 P + E+ +IH+P D E +PA +R+ +EL+A Q++L R Sbjct: 220 ADPVASLLAGLPPLLESLRLIHHPPPGTDLDALLERRTPACQRIVLEELVAQQLSLRRAR 279 Query: 245 KQFKKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 + + G P+ N +G+ A +L ++PF+ T +Q +I D++++ M R+LQGDVG Sbjct: 280 QLRAGQRGQPLANRDGEAA--LLASLPFALTGAQRRVCDEIAADLARQQPMNRLLQGDVG 337 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT++A +A AV +G QA +MAP ILA+QHYE + + + + V + G++ A Sbjct: 338 SGKTVIAALAAMVAVGSGWQATLMAPTEILARQHYERLSPWLEPLGVRVGWLAGSLGAAA 397 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420 +R+ + +A G+ ++IGTHAL +DS+ + +L L IVDEQHRFGV QRL L + T Sbjct: 398 KRRVKQAVAAGEVDVLIGTHALIEDSVVFPRLALAIVDEQHRFGVAQRLALRGEGTRDAG 457 Query: 421 ----------------------------------------PHVLLMTATPIPRTLVLTSL 440 PH L+MTATPIPRTL +T Sbjct: 458 TAAEEPERAGATQDTAQAAAGQDGRVRSAAEGHAGEDGFLPHQLMMTATPIPRTLAMTFY 517 Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500 D+D+S I E P GR+P+ T +I +R D+V+E + ++EG++AYW+CP +EE + + Sbjct: 518 ADLDVSVIDELPPGRQPVTTKLIADSRRDQVVENVGRWVAEGRQAYWVCPLVEESEALDL 577 Query: 501 RSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 ++ ++ L ++HGR+S +K+ VM +FK G LL+ATTVIEVG+DV + Sbjct: 578 QNAIDTREQLQAALPQVRTGLVHGRLSAAEKDEVMAAFKAGELDLLVATTVIEVGVDVPN 637 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619 AS+++IE+AE FGL+QLHQLRGRVGRG S C+LLY P + RL+ ++ T+DGF Sbjct: 638 ASLMVIEHAERFGLSQLHQLRGRVGRGTAQSLCVLLYRHPPGAIARERLATMRETQDGFE 697 Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 IA DL+ R GE+LG +QSG A L++IA ++ +L PD+ Sbjct: 698 IARRDLELRGPGELLGARQSGAMLLRFADLGRDAPLVDIAHALSERLLEARPDV 751 >gi|328945679|gb|EGG39830.1| DNA helicase RecG [Streptococcus sanguinis SK1087] Length = 671 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 244/671 (36%), Positives = 385/671 (57%), Gaps = 30/671 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL+ GVG K + +K+ ET DLL Y P + D + + E+ Sbjct: 3 LHQPLTVLPGVGPKSAEKFTKL-----GLET-LQDLLLYFPFRYEDFKSKNVLGLEDGEK 56 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 V ++G + ++ Q + ++ GE+ L + L + G I V GK Sbjct: 57 AV-VSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184 K K + + + +D ++ VY L G+S V L K + L L Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDLL-- 166 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 L E + + LL++ S EA IH P+ D++ A R+ ++EL Q+ L +++ Sbjct: 167 LEENLPQPLLERYQLVSRVEAVRAIHFPKDLADYK---QALRRVKFEELFYFQMQLQVLK 223 Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 ++ K G+ I+ + + +++PF T +QE ++ +ILQD+ M R+LQGDVG Sbjct: 224 RETKAVSNGLKIDWQLDAVAEKKQSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVG 283 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA +AM A AG Q+ +M P ILA+QH++ + + ++ + ++TG M A Sbjct: 284 SGKTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAE 341 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L I GQ +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR L +K P V Sbjct: 342 RRETLSAIEKGQVDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDV 401 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL +T+ GD+D+S I + PAGR+PI T + +++ V++ LK L +G Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRRPIITRWVKHEQLEVVLDWLKKELHKGA 461 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGT 541 + Y+I P IEE + + ++ + L +F+ + +A++HG+M +KE++M FK G Sbjct: 462 QVYFISPLIEESEALDLKNAIALEEELTAYFSQQAQVALLHGKMKSEEKEAIMQDFKEGR 521 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S +L+ +P + Sbjct: 522 TDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-T 580 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 ++ R+ ++ T DGFL+AEEDLK R GEI G +QSG+P+F +A +LE ARK Sbjct: 581 ESGKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640 Query: 662 DAKHILTQDPD 672 A I T DP+ Sbjct: 641 VASQI-TADPN 650 >gi|56476706|ref|YP_158295.1| ATP-dependent DNA helicase RecG [Aromatoleum aromaticum EbN1] gi|56312749|emb|CAI07394.1| RecG-like helicases [Aromatoleum aromaticum EbN1] Length = 652 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 234/628 (37%), Positives = 352/628 (56%), Gaps = 24/628 (3%) Query: 60 KISEISEER---IVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT--LLFFYRKTEMLK 114 +++ I+ R V I G + S L+ RR + D +G + L FY + Sbjct: 13 RVTPIAAARGGTAVQIEGEVVS-SEIMLRPRRQLVARIRDASGMLVARWLNFYPSQQ--- 68 Query: 115 NVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLF 171 GR++ + G+++ MVHP ++ D PL +A +Y GL+ Sbjct: 69 KQLAAGRRVRLFGEVRGGFFGDEMVHPRV---HAVDDGEPLPQALTPIYPTTAGLAQSAL 125 Query: 172 KKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARER 227 +K++ AL +P L E++ + +L + P+ A+A + +H+P D + PA R Sbjct: 126 RKLVARALYAVP-LDEYLPEPVLAELRLPNFADAVHTLHHPPPDVDAAALEDRAHPAWRR 184 Query: 228 LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287 + ++ELL Q++L + + G++ +L +PF T +Q A+ I D Sbjct: 185 IKFEELLVQQLSLRRAYNARRTHRAPALPATGRLCDALLTQLPFRLTGAQARAVAAIAHD 244 Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347 ++ + M R+LQGDVGSGKT+VA +AM A E G QAV+MAP ILA+QH+ + + + Sbjct: 245 LAMPHPMQRLLQGDVGSGKTIVAALAMLQAAENGFQAVLMAPTEILAEQHWRKLGAWLEP 304 Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407 + + ++G+ + R L R+A G+ + +GTHAL +D + +L L IVDEQHRFG Sbjct: 305 LGVDIAWLSGSRKRRERDAELARLASGEVLLAVGTHALIEDPVLLPRLGLAIVDEQHRFG 364 Query: 408 VQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464 V+QRL L K PH+L+M+ATPIPRTL ++ D+D++ + E P GR PI T ++ Sbjct: 365 VRQRLALRDKGADGQHPHMLMMSATPIPRTLAMSYYADLDVTVLDELPPGRTPILTKLVS 424 Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHG 523 R D+V+ R++ G +AYW+CP IEE + ++ +E F +L I ++HG Sbjct: 425 DGRRDQVVARVRDACLAGCQAYWVCPLIEESEALQLKTALETFETLTAALPELRIGLVHG 484 Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583 R+ +K + M +F G LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRV Sbjct: 485 RLKGEEKSATMAAFATGELHLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRV 544 Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643 GRG S CILL+ PLS+N RL V+ DGF IA EDL R GE +G +QSG P Sbjct: 545 GRGTADSVCILLFTQPLSENGRARLKVIYEHSDGFAIAREDLHIRGPGEFVGARQSGTPL 604 Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDP 671 A E LLE AR A+ +L + P Sbjct: 605 LRYADLERDVDLLEPARTLAERLLDEAP 632 >gi|125717410|ref|YP_001034543.1| ATP-dependent DNA helicase RecG [Streptococcus sanguinis SK36] gi|125497327|gb|ABN43993.1| ATP-dependent DNA helicase recG, transcription-repair coupling factor, putative [Streptococcus sanguinis SK36] Length = 671 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 241/671 (35%), Positives = 384/671 (57%), Gaps = 30/671 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL+ GVG K + +K+ ET DLL Y P + D + + ++ + Sbjct: 3 LHQPLTVLPGVGPKSAEKFAKL-----GLET-LQDLLLYFPFRYEDFKSK-NVLDLEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + ++ Q + ++ GE+ L + L + G I V GK Sbjct: 56 KAVVSGRVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184 K K + + + +D ++ VY L G+S V L K + L L Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDLL-- 166 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 L E + + LL++ S EA +H P+ D++ A R+ ++EL Q+ L +++ Sbjct: 167 LEENLPQPLLERYQLVSRVEAVRAMHFPKDLADYK---QALRRVKFEELFYFQMQLQVLK 223 Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 ++ K G+ I+ + + +++PF T +QE ++ +ILQD+ M R+LQGDVG Sbjct: 224 RETKAVSNGLKIDWQLDAVAEKKKSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVG 283 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA +AM A AG Q+ +M P ILA+QH++ + + ++ + ++TG M A Sbjct: 284 SGKTVVAGLAMYAVYTAGYQSALMVPTEILAEQHFDSLTQLF--PELKLALLTGGMKTAE 341 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L I GQ +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR L +K P V Sbjct: 342 RRETLSAIEKGQVDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDV 401 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T + +++ V++ +K L +G Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWMKKELHKGA 461 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541 + Y+I P IEE + + ++ + L +F + +A++HG+M +KE++M FK G Sbjct: 462 QVYFISPLIEESEALDLKNAIALEEELTAYFGQQAQVALLHGKMKSEEKEAIMQDFKEGR 521 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S +L+ +P + Sbjct: 522 TDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-T 580 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 ++ R+ ++ T DGFL+AEEDLK R GEI G +QSG+P+F +A +LE ARK Sbjct: 581 ESGKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640 Query: 662 DAKHILTQDPD 672 A I T DP+ Sbjct: 641 VASQI-TADPN 650 >gi|331005600|ref|ZP_08328970.1| ATP-dependent DNA helicase RecG [gamma proteobacterium IMCC1989] gi|330420573|gb|EGG94869.1| ATP-dependent DNA helicase RecG [gamma proteobacterium IMCC1989] Length = 708 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 245/688 (35%), Positives = 372/688 (54%), Gaps = 30/688 (4%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 N + ++ +GVG + + L K+ D+LF+ P + DR I + Sbjct: 10 NGILTSVTALKGVGAQLAKKLEKL------GIYTLQDMLFHLPRQYADRTRVTPIGSLQP 63 Query: 67 ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 + V I + + + KRR + D TG ++L FY + + G +I Sbjct: 64 NQSVVIEAEV-RGTDVVFGKRRSLICRVQDNTGTLSL-RFYHFSNAQRATLATGARIRCY 121 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSR-- 181 G+ ++ + + + HP Y +S + L E +Y + G++ + + +I +AL+ Sbjct: 122 GETRRGASGLELYHPEYQLLSSNAAHSGLEETLTPIYPITEGITQNRLRTLIKQALTHAK 181 Query: 182 -------LPVLPEWIEKDLLQKKSFP-SIAEAFNIIHNPRKAKDFE----WTSPARERLA 229 L +LP ++ S P S+ E +H P K D P ++ L Sbjct: 182 DFDFRGYLALLPADTPEESAPAISLPNSLFEPLAYLHAPPKNADLAQLLAGEHPYQQVLI 241 Query: 230 YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289 +EL A Q+ LL +R+Q +++ +P+ V+ + + ++ + F+ T +Q+ ++DI QD+ Sbjct: 242 MEELTAYQLNLLRLREQRQQQAAVPLAVDKALEDQFIQALGFTLTNAQQRVVEDISQDLR 301 Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349 M+R+LQGDVGSGKT+VA +A A+ Q VIMAP ILA+QH +K+ Sbjct: 302 LSIPMMRLLQGDVGSGKTVVAALAALHAIAHQQQVVIMAPTEILAEQHRLNFEKWFSPLG 361 Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409 I V +TG RR+ L + G ++IGTHALFQDS+ + +L LVI+DEQHRFGV Sbjct: 362 ICVGSLTGKQKVKERREQLAALEQGVTQVVIGTHALFQDSVVFNRLALVIIDEQHRFGVH 421 Query: 410 QRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465 QRL L K PH L+MTATPIPRTL +++ D+D S I E P GR P++TVII Sbjct: 422 QRLSLRNKGNKHTGIPHQLIMTATPIPRTLAMSAYADLDYSVIDELPKGRIPVETVIISQ 481 Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGR 524 + E+I+R+ +G++AYW+C IE + ++ E L + ++ ++HGR Sbjct: 482 QKRPEIIQRIDYACQQGRQAYWVCTLIENSEALEAQAAEEAATLLASTLPNLTVGLVHGR 541 Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584 + +KE VM FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVG Sbjct: 542 LKPPEKEQVMAQFKAGEIDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVG 601 Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644 RG S C+LLY +S N RL +++T DGF IAE DL+ R GE+LG +Q+G F Sbjct: 602 RGSIASHCVLLYGDKVSLNGKERLKAMRSTSDGFKIAEVDLQLRGPGEVLGTRQTGDIDF 661 Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPD 672 +A L+ A+ I+T P+ Sbjct: 662 ALADLRRDLYLMPKVNAYAQAIITHFPE 689 >gi|323141066|ref|ZP_08075971.1| ATP-dependent DNA helicase RecG [Phascolarctobacterium sp. YIT 12067] gi|322414442|gb|EFY05256.1| ATP-dependent DNA helicase RecG [Phascolarctobacterium sp. YIT 12067] Length = 686 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 250/703 (35%), Positives = 384/703 (54%), Gaps = 42/703 (5%) Query: 12 PLSTFRGVGKKYSLFLS--KIINCGNANETRFIDLLFYHP--SSFIDRHYRPKISEI--- 64 P++T +GVG K + L+ I + G DLL ++P +++D I E+ Sbjct: 6 PVTTLKGVGVKKAAELAALNIFSVG--------DLLEFYPRQGAYLDYAKLKTIKELDVD 57 Query: 65 SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF----YRKTEMLKNVFFEG 120 + ++I T Y ++ + +R + + D TG TL FF Y+ ++ + + Sbjct: 58 NSKQIFKATVYQVKNG-YGASRRSYTSVTVRDETGYATLYFFGGQRYKAQKLKPDTVLQ- 115 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 +TG++++ + + + P I VY+L L+ + I EAL Sbjct: 116 ----ITGRVRQGRTTKSVSEVDVQPLEQDEGKTPGIVPVYALSGNLTQKNLRTWISEAL- 170 Query: 181 RLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 RL LPE + ++ + + P A IH P + +E A++R ++EL Q Sbjct: 171 RLAAEDLPESLPAKVVSQCNLPDRYTALKNIHFP---ESWEALRRAKQRFVFEELFLLQC 227 Query: 239 ALLLMRKQ-FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 LL R+Q GI +G + + +++ +PF T +Q+ A ++I DM K M RI Sbjct: 228 GLLYYRQQSHDNREGIKHAADGALVKDVMQGLPFELTAAQQQAWREISLDMQDKKPMHRI 287 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 LQGDVGSGKT+++ +A+A AVE G Q IM P ILA QH+E +++Y Q + + ++TG Sbjct: 288 LQGDVGSGKTVISALALAKAVENGYQGCIMVPTEILAAQHFETLEQYLQPYGVRIALLTG 347 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 M RR+ L + G +++GTHAL ++ +++ L L + DEQHRFGV+QR +L+ K Sbjct: 348 GMRAKARRELLLNLELGLVDVVVGTHALLEEDVRFANLSLTVTDEQHRFGVEQRARLSNK 407 Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 A AP VL+MTATPIPRTL LT GD+DIS + +P RKP++T+ R EV L Sbjct: 408 SANAPDVLVMTATPIPRTLALTVYGDLDISVMKGRPPQRKPVRTLCYTDERRREVYAGLV 467 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVM 534 + G++AY +CP IEE S + L F I A++HGR+ +K+++M Sbjct: 468 RQVQAGRQAYVVCPLIEESDVLAVHSAQRVYEELKRDFLQDIPCALLHGRLKGAEKDAIM 527 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 SF G K+L++TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG E S C+L Sbjct: 528 SSFAAGELKVLVSTTVIEVGVNVPNATLMVIENAERFGLAQLHQLRGRVGRGSEQSYCVL 587 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 L S + RL+VL +EDGF +AE+D++QR G++ G+KQ G+P IA Sbjct: 588 LTAAD-SPEALARLNVLHESEDGFYLAEKDMEQRGAGQLFGLKQHGLPDLRIADIMRDVD 646 Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFI 697 ++ R+ A+ L D +R L Q+ E F I Sbjct: 647 VIAQVRQLAQAQLRTPEDWAEIR------RLVEMQFGERFNMI 683 >gi|168493601|ref|ZP_02717744.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae CDC3059-06] gi|183576417|gb|EDT96945.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae CDC3059-06] Length = 671 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 244/678 (35%), Positives = 386/678 (56%), Gaps = 30/678 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL K S +A +H P KD A R+ ++EL Q+ L ++ + Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ +N + + ++PF+ T++QE ++++IL DM + M R+LQGDVGSG Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QA +M P ILA+QH+E ++ N ++ ++TG++ A +R Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T I ++ +V+ L+ + +G +A Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIGQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + +A++HGRM +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + + Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642 Query: 664 KHILT-----QDPDLTSV 676 +I + +DP+ + Sbjct: 643 SYISSIEAWQEDPEWCMI 660 >gi|15677628|ref|NP_274787.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis MC58] gi|7227042|gb|AAF42127.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis MC58] gi|316984386|gb|EFV63359.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis H44/76] gi|325139672|gb|EGC62210.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis CU385] gi|325200852|gb|ADY96307.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis H44/76] Length = 680 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 228/600 (38%), Positives = 341/600 (56%), Gaps = 7/600 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H + R+ + + DG+G + L F + G++I G+IK M Sbjct: 65 HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP + L VY GL+ ++II AL P L + + LL + Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182 Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 P +AE+ ++H+P + + T PA +RL +DELLA Q+++ L R++ Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAA 242 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + +G + Q + + +PF+ T +QE + +I +DM+Q M R+LQGDVGSGKT+VA ++ Sbjct: 243 LGGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSA 302 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A+E+G Q +MAP ILA+QH+ K++ + I V + G++ + + +A ++A G Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 I +GTHALF D + ++ L L IVDEQHRFGV QRL L K H L+M+ATPIPRT Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I E P GR PIKT ++ R EV + +G++AYW+CP IEE Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEE 482 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ E L +I ++HGRM +K VM F +G +L+ATTVIEV Sbjct: 483 SETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEV 542 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +A++++IE+AE GLAQLHQLRGRVGRG S C+LL+ PL + + RL V+ Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA +DL R GE LG +QSG+P A+ E LLE AR+ A ++ Q+P++ Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 662 >gi|194396798|ref|YP_002038308.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae G54] gi|194356465|gb|ACF54913.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae G54] Length = 671 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 244/674 (36%), Positives = 385/674 (57%), Gaps = 30/674 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL K S +A +H P KD A R+ ++EL Q+ L ++ + Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ +N + + ++PF+ T++QE ++++IL DM + M R+LQGDVGSG Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QA +M P ILA+QH+E ++ N ++ ++TG++ A +R Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T I ++ +V+ L+ + +G +A Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + +A++HGRM +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + + Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642 Query: 664 KHILT-----QDPD 672 +I + +DP+ Sbjct: 643 SYISSIEAWQEDPE 656 >gi|145589967|ref|YP_001156564.1| ATP-dependent DNA helicase RecG [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048373|gb|ABP35000.1| ATP-dependent DNA helicase RecG [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 671 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 244/615 (39%), Positives = 352/615 (57%), Gaps = 37/615 (6%) Query: 87 RRPYKILLNDGTGEITLLF--FYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI 144 RR + + D T + L F FY + V G I V G++++ MVHP + Sbjct: 48 RRQMVVTIEDETETLNLRFLNFYPSQQKQMAV---GSHIRVRGEVREGFQGSEMVHP-TV 103 Query: 145 FHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVL--------PEWIEKDLLQ 195 S D P + VY G+S +K + AL R P L P + +LL Sbjct: 104 KAVSSDTPLPASLTPVYPATAGVSQAAIRKAVNLAL-RDPSLQESLAEFFPHQLMSELLP 162 Query: 196 KKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIAL----LLMRKQ- 246 +P++ EA +H P + E T PA R+ ++ELLA QI+L + R + Sbjct: 163 SYDWPNLMEAITYLHQPPADANTQALLERTHPAWRRVQFEELLAQQISLKRAHAIRRGRQ 222 Query: 247 ---FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 F KEI + +E + L +PF T +Q +I D++Q M R+LQGDVG Sbjct: 223 APTFSKEIKKGLGIEAGL----LAVLPFKLTAAQARVWLEIGHDLAQAFPMNRLLQGDVG 278 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA +A A ++ G QA +MAP ILA+QHY +K++ + + + +TG++ Sbjct: 279 SGKTVVAALAAAHVMDQGYQAAVMAPTEILAEQHYLKMKEWFEPLGVKIAWLTGSLKAKE 338 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP-- 421 +R A E I GQA +IIGTHAL Q+S+++ KL L ++DEQHRFGV+QRL++ Q+ + Sbjct: 339 KRLAQEMIESGQAQLIIGTHALIQESVRFAKLGLAVIDEQHRFGVRQRLEIQQRVGSELF 398 Query: 422 --HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 H L+M+ATPIPRTL +T D+D+S I E P GRKPI T ++ +R +EVI L L Sbjct: 399 YCHQLMMSATPIPRTLAMTYYADLDVSVIDELPPGRKPITTKVVKASRREEVISGLHSWL 458 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538 ++G +AYW+CP IEE + ++ VE F L + + ++HGR+ +K +VM +FK Sbjct: 459 AKGLQAYWVCPLIEESEVLQLQTAVESFEQLTQALPGFKVGLVHGRLKSDEKAAVMAAFK 518 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 +LL+ATTVIEVG+DV +A++++IE+AE FG AQ+HQLRGRVGRG S CIL+Y Sbjct: 519 ANEIQLLVATTVIEVGVDVPNAALMVIEHAERFGYAQIHQLRGRVGRGSADSVCILMYAE 578 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PLS + RL L+ T DGF+IAE DL R GE+LG KQSG + L+E+ Sbjct: 579 PLSMAAKERLQTLRETSDGFVIAERDLSLRGPGELLGAKQSGDAMLRFVDLQRDAWLIEL 638 Query: 659 ARKDAKHILTQDPDL 673 A+K A +L +L Sbjct: 639 AQKAADRLLADHREL 653 >gi|325133693|gb|EGC56350.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis M13399] gi|325143874|gb|EGC66189.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis M01-240013] Length = 680 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 228/600 (38%), Positives = 341/600 (56%), Gaps = 7/600 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H + R+ + + DG+G + L F + G++I G+IK M Sbjct: 65 HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP + L VY GL+ ++II AL P L + + LL + Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182 Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 P +AE+ ++H+P + + T PA +RL +DELLA Q+++ L R++ Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAA 242 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + +G + Q + + +PF+ T +QE + +I +DM+Q M R+LQGDVGSGKT+VA ++ Sbjct: 243 LGGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSA 302 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A+E+G Q +MAP ILA+QH+ K++ + I V + G++ + + +A ++A G Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 I +GTHALF D + ++ L L IVDEQHRFGV QRL L K H L+M+ATPIPRT Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I E P GR PIKT ++ R EV + +G++AYW+CP IEE Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEE 482 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ E L +I ++HGRM +K VM F +G +L+ATTVIEV Sbjct: 483 SETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEV 542 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +A++++IE+AE GLAQLHQLRGRVGRG S C+LL+ PL + + RL V+ Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA +DL R GE LG +QSG+P A+ E LLE AR+ A ++ Q+P++ Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 662 >gi|254493027|ref|ZP_05106198.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae 1291] gi|226512067|gb|EEH61412.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae 1291] Length = 680 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 227/600 (37%), Positives = 340/600 (56%), Gaps = 7/600 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H + R+ + + DG+G + L F + G++I G+IK M Sbjct: 65 HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYAGHQKQTAVGKRIRAVGEIKHGFYGDEM 124 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP + L VY GL+ ++II AL P L + + LL + Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182 Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 P +AE+ ++H+P + + T PA +RL +DELLA Q+++ L R++ Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGTAAA 242 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + +G + Q + + +PF+ T +QE + +I +DM+Q + M R+LQGDVGSGKT+VA ++ Sbjct: 243 LRGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSA 302 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A+E+G Q +M P ILA+QH+ K++ + I V + G++ + + +A ++A G Sbjct: 303 LTAIESGAQVAVMTPTEILAEQHFIKFKQWLEPLGIEVVCLFGSLRKKAKDEAKAKLADG 362 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 I +GTHALF D + ++ L L IVDEQHRFGV QRL L K H L+M+ATPIPRT Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLSIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I E P GR PIKT ++ R EV + +G++AYW+CP IEE Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEE 482 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ E L +I ++HGRM +K VM F G +L+ATTVIEV Sbjct: 483 SETLQLQTAAETLARLQTALPEPNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEV 542 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +A++++IE+AE GLAQLHQLRGRVGRG S C+LL+ PL + + RL V+ Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA +DL R GE LG +QSG+P A+ E LLE AR+ A ++ Q+P++ Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 662 >gi|257095000|ref|YP_003168641.1| ATP-dependent DNA helicase RecG [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047524|gb|ACV36712.1| ATP-dependent DNA helicase RecG [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 691 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 231/605 (38%), Positives = 352/605 (58%), Gaps = 21/605 (3%) Query: 87 RRPYKILLNDGTGEITLLF-----FY-RKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140 RR ++D GE + LF FY + L+ GR++ + G+I+ MVH Sbjct: 70 RRQLVARVSDAGGEGSTLFLRFLSFYGSQKSGLEAARDAGRRLRIFGEIRDGFLGREMVH 129 Query: 141 PHYIF------HNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKD 192 P Y F DV+ P + VY GL+ +++I AL + E + Sbjct: 130 PRYRFLSDDENGGESDVDALPPSLTPVYPSTAGLAQGTLRRLIARALRAADLA-ELLADG 188 Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEW----TSPARERLAYDELLAGQIALLLMRKQFK 248 ++ + PS+ A +H+P A D PA R+ +DELLA Q+AL + + Sbjct: 189 WREQHALPSLPAAVAFLHSPPPAVDESALQARAHPAWRRIKFDELLAQQLALRRLSLARR 248 Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 ++ + V G++A+++ +PF+ T +Q +I D+ Q + M R+LQGDVG GKT+ Sbjct: 249 RQGAPVLAVAGELARRLQAALPFALTGAQRRVAAEIATDLEQAHPMQRLLQGDVGCGKTI 308 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VA +A A+EAG Q MAP ILA+QHY ++ + + I V + G++ R+ Sbjct: 309 VAALAACQAIEAGYQTAFMAPTEILAEQHYSKLRAWLEPLGIEVSWLAGSLGGKARQAKR 368 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428 +++A A +++GTHAL Q+SI + +L L IVDEQHRFGV QRL+L +K PH L+M+A Sbjct: 369 QQVAT-SAQLVVGTHALIQESIDFARLGLAIVDEQHRFGVVQRLELRRKGVNPHQLMMSA 427 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488 TPIPRTL ++ D+D+S I E P GR P+KT + R EVI ++ V++ G++AYW+ Sbjct: 428 TPIPRTLAMSYYADLDVSVIDELPPGRSPVKTRLFSDTRRAEVIAAVRAVVAGGRQAYWV 487 Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 CP +EE + ++ ++ + +L + + ++HGR+ +K SVM +F G +L+A Sbjct: 488 CPLVEESAKLELQAALDTWAALTAELSDLRVGLVHGRLKGDEKASVMAAFVAGEIDVLVA 547 Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607 TTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG E S C+LLY PLS+ + R Sbjct: 548 TTVIEVGVDVANASLMVIEHAERFGLSQLHQLRGRVGRGAEESVCVLLYQQPLSRTARAR 607 Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 L ++ DGF IA +DL+ R GE +G +QSG+P A E L+E+A++ A L Sbjct: 608 LKIIFEHTDGFEIARQDLRLRGPGEFIGSRQSGVPLLRYADLESDADLVELAQQMAVQWL 667 Query: 668 TQDPD 672 DP+ Sbjct: 668 RNDPE 672 >gi|315613614|ref|ZP_07888521.1| DNA helicase RecG [Streptococcus sanguinis ATCC 49296] gi|315314305|gb|EFU62350.1| DNA helicase RecG [Streptococcus sanguinis ATCC 49296] Length = 671 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 243/674 (36%), Positives = 382/674 (56%), Gaps = 30/674 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL K S +A +H P KD A R+ ++EL Q+ L ++ + Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ +N + + N+PF+ T++QE ++++IL DM + M R+LQGDVGSG Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKENLPFALTQAQEKSLQEILADMKSDHHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QA +M P ILA+QH+E ++ + ++ ++TG++ +R Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPDLKLA--LLTGSLKAVEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LE IA G+A +IIGTHAL QD + Y +L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T I ++ +V+ L+ + +G +A Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + +A++HG+M +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQEFKEQKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPKTDSG 583 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 Y R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 584 KY-RMRIMTETTNGFILAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKIA 642 Query: 664 KHILT-----QDPD 672 +I + +DP+ Sbjct: 643 SYISSIEDWQEDPE 656 >gi|78184817|ref|YP_377252.1| ATP-dependent DNA helicase RecG [Synechococcus sp. CC9902] gi|78169111|gb|ABB26208.1| ATP-dependent DNA helicase RecG [Synechococcus sp. CC9902] Length = 850 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 245/707 (34%), Positives = 394/707 (55%), Gaps = 51/707 (7%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L +P++ +GVG K + L+ + + R ++P +D +I + Sbjct: 151 LESPITRIKGVGPKLASRLASLNLLLVKDLLR------HYPRDHVDYSAMRRIEALVAGE 204 Query: 69 IVTITGYISQHSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK-- 122 TI I + + F + R P ++ L D TG + + F + +G++ Sbjct: 205 TATIVATIRRCNGF-VSPRNPNLAILELQLQDPTGRLKVTRFLAGKRFSSQAYLKGQQRL 263 Query: 123 ------ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA-------VYSLPTGLSVD 169 + V+G +K + P + ++ P+ A VY+L G+ D Sbjct: 264 YPAGASVAVSGLVKDGAYGLSFQDP--LIEVLENPTSPVKSASIGRLLPVYALTEGVGAD 321 Query: 170 LFKKIIVEALSRLPVLPEWIE---KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE 226 F+ +I + L P+ +WIE + L + S++EA +H P KD R Sbjct: 322 RFRSLIEQVL---PLTEQWIEPLPEPLRKTFGLLSVSEALKALHAP---KDRTTLDRGRH 375 Query: 227 RLAYDELLAGQIALLL----MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282 RL +DE L Q+ LL +R + E+G+ + +G + Q + F T +Q+ ++ Sbjct: 376 RLVFDEFLLLQLGLLRRRQALRSRPGPELGLLPSSQG-LVQDFKDLLSFQFTDAQQRVLR 434 Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342 +I D++Q M R++QGDVGSGKT+VA+ A+ + + +G Q +MAP +LA+QH+ + Sbjct: 435 EIEADLAQSKPMARLVQGDVGSGKTVVAIAALLSTIASGWQGALMAPTEVLAEQHHRNLC 494 Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402 + I VE++TG+ P+ RR+ L+ +A G +++GTHAL +D + + +L LV+VDE Sbjct: 495 HWFPQLHITVELLTGSTPRPRRRQLLDDLASGSLKLLVGTHALLEDPVVFERLGLVVVDE 554 Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462 QHRFGV QR +L K PH+L MTATPIPRTL L+ GD+D+S+I E P GR PIKT + Sbjct: 555 QHRFGVHQRDRLLNKGLQPHLLTMTATPIPRTLALSVHGDLDVSQIDELPPGRTPIKTAM 614 Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL-HEHFTS-SIAI 520 + + ++ ++ +S+G++AY + P +EE ++ RS VE L E F + + Sbjct: 615 LSAGQREKAYALIRDEVSKGQRAYVVLPLVEESEKLELRSAVEVHAELVSEVFPDLQVGL 674 Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580 +HGR+S ++K+ V+ SF +G C++L++TTV+EVG+DV +AS+++I++AE FGLAQLHQLR Sbjct: 675 LHGRLSSVEKQEVLSSFSSGACQVLVSTTVVEVGVDVPEASVMMIDHAERFGLAQLHQLR 734 Query: 581 GRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638 GRVGRG S C+L+ PL++ RL VL + DGF IAE DL+ R G++LG +Q Sbjct: 735 GRVGRGAAASHCLLINGSSNPLARQ---RLDVLVRSTDGFEIAEMDLRLRGPGQVLGTRQ 791 Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685 SG+P +A ++LE AR A+ +L DP+L R +R LL Sbjct: 792 SGLPDLALASLADDAAVLEDARTAAQDLLRDDPNLE--RCPKLRALL 836 >gi|33861313|ref|NP_892874.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633890|emb|CAE19215.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 818 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 231/651 (35%), Positives = 370/651 (56%), Gaps = 27/651 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99 D++ Y P +++D R KI + + + T + + ++ I+ + D T Sbjct: 151 DIINYFPRTYLDYTNRVKIINLKPDNLYTCIATVKKFYIYKSSNNSNLSIMNIVIFDETS 210 Query: 100 EITLLFFYRKTEMLKNVFFE--------GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV 151 I + F+ FF G K+ ++GK+K + V P N+ + Sbjct: 211 SIKVTKFFLGKRFRSYSFFSSQKSLYIPGTKLAISGKVKLSEYGKNFVDPQIEILNTNEE 270 Query: 152 NFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI 208 +F I +YSL S F ++I + P+ + + L S S +++ Sbjct: 271 SFNFSGKIMPLYSLSESFSNLSFIRLIKRVIIYSKQYPDILNQKQLNFLSLVSKSDSLIN 330 Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-IAQKILR 267 IH P +++RL +DEL Q+ LL +++ K++ I +++ + + L Sbjct: 331 IHLPVNQNAL---IESKKRLVFDELFLLQMKFLLRKRKNNKKLTIQKSIKKNFLLKDFLN 387 Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 +PF TKSQE + +I D+S M R+LQGDVGSGKT++A+ + +E Q +M Sbjct: 388 KVPFQLTKSQEKVLDEIKSDLSDLTPMSRLLQGDVGSGKTIIAIATLLIELEKDQQGALM 447 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LA QHY+ + ++ + VE++TGN PQ R++ L + +G I++GTHALF+ Sbjct: 448 VPTEVLATQHYKNLIQFLNPLLVSVELLTGNTPQKKRKEILTNLKNGMVDILVGTHALFE 507 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D + + L +V++DEQHRFGV QR +L K ++L MTATPIPRTL L+ GD+DIS+ Sbjct: 508 DKVVFNSLGMVVIDEQHRFGVTQRNRLLNKGDNTNLLSMTATPIPRTLALSLYGDLDISQ 567 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 ITE P GR PI T II ++++ +R++ + +GK+AY I P IE+ ++ N S + + Sbjct: 568 ITELPPGRVPITTKIISEEELNKLFKRVENEIDKGKQAYVILPLIEDSEKMNLSSAKKIY 627 Query: 508 NSLHEH--FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 L E + + ++HG+++ +K +V++SF N +L++TTVIEVGIDV +ASI+II Sbjct: 628 QYLSEEIFLKNKVGLLHGKLNSEEKNNVINSFVNNEVNILVSTTVIEVGIDVPNASIMII 687 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS---YTRLSVLKNTEDGFLIAE 622 N+E FGL+QLHQLRGRVGRG + S C L+ S+N+ RL VL+ + DGF IAE Sbjct: 688 YNSERFGLSQLHQLRGRVGRGSQKSFCYLV----TSENNGLENKRLRVLEKSNDGFYIAE 743 Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 +DL+ R G++LG KQSG+P F++ + L+E AR++A+ +L +DPDL Sbjct: 744 KDLELRGPGQLLGYKQSGLPDFVLDNLPNNKVLIEKAREEAQRVLKEDPDL 794 >gi|218767626|ref|YP_002342138.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis Z2491] gi|121051634|emb|CAM07935.1| putative DNA helicase [Neisseria meningitidis Z2491] gi|319409884|emb|CBY90199.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis WUE 2594] Length = 680 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 228/600 (38%), Positives = 341/600 (56%), Gaps = 7/600 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H + R+ + + DG+G + L F + G++I G+IK M Sbjct: 65 HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAIGKRIRAVGEIKHGFYGDEM 124 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP + L VY GL+ ++II AL P L + + LL + Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182 Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 P +AE+ ++H+P + + T PA +RL +DELLA Q+++ L R++ Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAA 242 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + +G + Q + + +PF+ T +QE + +I +DM+Q M R+LQGDVGSGKT+VA ++ Sbjct: 243 LGGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSA 302 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A+E+G Q +MAP ILA+QH+ K++ + I V + G++ + + +A ++A G Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 I +GTHALF D + ++ L L IVDEQHRFGV QRL L K H L+M+ATPIPRT Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I E P GR PIKT ++ R EV + +G++AYW+CP IEE Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEE 482 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ E L +I ++HGRM +K VM F +G +L+ATTVIEV Sbjct: 483 SETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEV 542 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +A++++IE+AE GLAQLHQLRGRVGRG S C+LL+ PL + + RL V+ Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA +DL R GE LG +QSG+P A+ E LLE AR+ A ++ Q+P++ Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 662 >gi|194334659|ref|YP_002016519.1| ATP-dependent DNA helicase RecG [Prosthecochloris aestuarii DSM 271] gi|194312477|gb|ACF46872.1| ATP-dependent DNA helicase RecG [Prosthecochloris aestuarii DSM 271] Length = 712 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 242/721 (33%), Positives = 383/721 (53%), Gaps = 40/721 (5%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 +N PL+ +GVG + + +++ R DL Y P ++DR I ++ Sbjct: 6 MNSDSTPLTFVKGVGPEKA----RVLEAEGLGSVR--DLYEYFPRRYLDRSRLKSIGSLA 59 Query: 66 EERIVTITGYISQHSSFQLQKRRP-YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124 E +VT+ G +S+ + + +++ L+DGTG + L +F R + G + Sbjct: 60 EGELVTVVGTVSRAEKERSSSGKALFRVWLSDGTGNLVLTWF-RGAVYFSKMVRPGDLLA 118 Query: 125 VTGKIKKLKNRIIMVHPHY-------------------IFHNSQDVN-FPLIEAVYSLPT 164 V GK+ M HP + +FH + +P+ +A+ Sbjct: 119 VHGKVGFFCGHAQMQHPDFDRLQDASAESGAKGVSDADLFHTGGIIPLYPVTDAMKK--A 176 Query: 165 GLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSP 223 GL + II+ A+ P + E + ++ I A+ IH P ++ E Sbjct: 177 GLDSRRLRAIILRAMESHPAFIDEHLPDSIIASHGLLEINLAYRQIHCPVSSEMLE---R 233 Query: 224 ARERLAYDELLAGQIALLL-MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282 A R ++EL Q+ L Q K + G + +PFS T +Q+ A++ Sbjct: 234 AVHRFKWNELFYAQLFFALRYHAQKKNNAAVRFERSGDKTALLYSLLPFSMTDAQKQAVR 293 Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342 +I +D+ ++M R+LQGDVGSGKTLVA+ +MA AV+ G QA IMAP ILA QH+ I+ Sbjct: 294 EIYRDLRSGSQMNRLLQGDVGSGKTLVAMFSMALAVDNGLQAAIMAPTEILAFQHWLGIR 353 Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402 KY + + V ++TG+ + R L + G + +GTHA+ ++ +++ +L L+I+DE Sbjct: 354 KYCEPLGLRVGLLTGSQKKKERDVILSGLEDGSYDLAVGTHAMIEERVRFKRLGLIIIDE 413 Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462 QHRFGV QR L K+ PHVLLMTATPIPRTL + + GD+D++ I E P GRK I T + Sbjct: 414 QHRFGVLQRKALQDKSVNPHVLLMTATPIPRTLCMGAFGDLDVTLIDELPGGRKAIVTRL 473 Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAI 520 N V+E ++ ++ G++AY + P ++E ++ + ++ + + L + I + Sbjct: 474 CHENSKPRVLELIRKEVAAGRQAYIVYPLVDESEKIDLKAATDSYLQLQKDLLPELRIGL 533 Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580 +HGRM +KE +MD F+ G +L+ TTVIEVG+DV +A++++IE+AE FGLAQLHQLR Sbjct: 534 VHGRMKPAEKELIMDRFRQGDVDVLVGTTVIEVGVDVPNATVMVIEHAERFGLAQLHQLR 593 Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 GRVGRG E S C LLY L ++ RL ++ + DGF ++E D + R G +LG +QSG Sbjct: 594 GRVGRGPEQSYCYLLY-SRLGGDAAERLRAMEASTDGFRLSEIDARIRGTGNVLGKEQSG 652 Query: 641 M-PKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699 M F +A +L++AR A ++ DP L + + IR Y Y+E F Sbjct: 653 MVSGFSMADLNRDSEILDVARDAAFRLVDDDPQLRNPLHRGIRN-YYTTHYHEKFSLADI 711 Query: 700 G 700 G Sbjct: 712 G 712 >gi|289523456|ref|ZP_06440310.1| ATP-dependent DNA helicase RecG [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503148|gb|EFD24312.1| ATP-dependent DNA helicase RecG [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 696 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 249/671 (37%), Positives = 379/671 (56%), Gaps = 30/671 (4%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE-------R 68 +GVG K + LSK+ ET DLL++ P + DR I + + R Sbjct: 19 LKGVGPKRASLLSKL-----GVET-VEDLLYFFPRRYEDRRQITPIKSLEPDSYAALLVR 72 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 +V + I++ + L + DGT L+F ++ L+N+ G + + GK Sbjct: 73 VVGVEKKITKKRNLNLTV-----ATVTDGTDIAQALWFNKRG--LENLLSIGTLVALFGK 125 Query: 129 IKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL 185 IK+ + +++P + I ++ I +Y L GLS + +I LS L + Sbjct: 126 IKENYGMLQILNPEFEIIEEDALPEEMGKIVPIYPLTEGLSQRWLRLLIRRTLSEYLSYV 185 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 E++ +D++ + FP + +A H P + W S R+RLA+DEL Q+ + + R+ Sbjct: 186 EEFLPEDIVLRYGFPPLKKAILGYHYPDDERG--WKS-CRKRLAFDELFLLQLGVAIKRR 242 Query: 246 QFKKEIGIP-INVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 Q ++E P ++ G + K + N + F T +QE + DI D+ +K M R+LQGDVG Sbjct: 243 QMEEETSAPKLSCGGPLQMKFVENCLNFKLTSAQEMVLGDICVDIFRKIPMNRLLQGDVG 302 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT++A++AM AAV+ G QA +M P +LA QHY I + V ++T ++ Sbjct: 303 SGKTVIAVLAMLAAVDTGYQAAMMVPTEVLANQHYAKITNWLSKLNAEVTLLTSSLTPQE 362 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 R K E I G++ I+IGTH+L Q+ +++ +L LV++DEQHRFGV QR L K + PH Sbjct: 363 RAKRYEDIKSGRSRIVIGTHSLIQEGVEFRELGLVVIDEQHRFGVLQRRTLMDKGSYPHT 422 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL LT GD+ +S I E P GR P++T I ++ E+ E +K L G Sbjct: 423 LVMTATPIPRTLALTVYGDLSLSIIDELPPGRTPVRTQWIGKGKLKELYEFVKKKLLAGN 482 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542 + YW+CP I+E + + SV +R+ SL E F+ + ++HGR+ DK+ +F G Sbjct: 483 QVYWVCPLIDESESIDATSVQKRYRSLCEIFSDFKVGLLHGRLGAPDKDETYRAFLRGDL 542 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 +L+AT+VIEVGIDV A+I++IE+A FGL+QLHQLRGRVGRG C LL P + Sbjct: 543 DILVATSVIEVGIDVARANIMVIEDAYRFGLSQLHQLRGRVGRGGGQGYCFLLGEAP-TP 601 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662 + R V+ +T DGF+IAEEDLK R G G++Q G+ F +A LL+IAR++ Sbjct: 602 EARKRFKVMCSTSDGFVIAEEDLKLRGPGAFCGVRQHGITDFRVADLVNDVDLLDIAREE 661 Query: 663 AKHILTQDPDL 673 A+ ++ DP L Sbjct: 662 AQVLVENDPSL 672 >gi|284037365|ref|YP_003387295.1| ATP-dependent DNA helicase RecG [Spirosoma linguale DSM 74] gi|283816658|gb|ADB38496.1| ATP-dependent DNA helicase RecG [Spirosoma linguale DSM 74] Length = 702 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 247/691 (35%), Positives = 380/691 (54%), Gaps = 37/691 (5%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 R +F + PL+ +G+G + + L+K +N + DL+ Y+P + DR I Sbjct: 4 RATFFD---TPLAYLKGLGPQRTELLNKELNLFT-----YGDLIQYYPFRYDDRSRYYTI 55 Query: 62 SEISEER-IVTITGYISQHSSFQLQKRRPYKILL---NDGTGEITLLFFYRKTEMLKNVF 117 SE+ + I G + + L+ P K L+ +DGTG ++L++F T + K + Sbjct: 56 SELMDSMPSAQIRGRLR---DWYLEGEGPKKRLVATFSDGTGSMSLVWFQGITFIEKTLR 112 Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177 EG I GK + + +VHP N+ N P VY+L L ++ Sbjct: 113 REGEYIAY-GKPQSFNGQFSIVHPELENANAASENEPGFFPVYNLTDKLRKRHLDSKVLG 171 Query: 178 ALSRLPVLPEW------IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231 R+ + W + L+Q+ EA IH P+ W A+ RL ++ Sbjct: 172 KAMRVLLEQSWTHIRETLPDSLIQQYRLIGKREAMWNIHLPQNQG---WLKQAQRRLKFE 228 Query: 232 ELLAGQIAL----LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287 EL Q+ L LL +++F ++ ++ ++L PF T +Q+ IK+I D Sbjct: 229 ELFYNQLRLIKNKLLQKEEFPGQVFRDTSLMKHFYNELL---PFELTGAQQRVIKEIYAD 285 Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347 +M R+LQGDVGSGKT+VA I A+ G QA +MAP ILA QHY +K + Sbjct: 286 FLSGKQMNRLLQGDVGSGKTIVAFITCLIAIGNGAQACLMAPTEILADQHYNGLKPFADA 345 Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407 + + I+TG+ + R E + G+ HI++GTHAL +D++QY L L I+DEQHRFG Sbjct: 346 MGLNLGILTGSTNKKRRVVLHEELQSGKMHILVGTHALLEDAVQYKNLGLCIIDEQHRFG 405 Query: 408 VQQRLKLTQK--ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465 V QR KL +K PH+L+MTATPIPRTL +T G++D+S I E P GRKPIKTV Sbjct: 406 VAQRAKLWRKNETVPPHILVMTATPIPRTLAMTLYGNLDVSTIDELPKGRKPIKTVHKYD 465 Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIH 522 EV ++ + G++ Y + P IEE ++ +++ +++ F S+ F T I ++H Sbjct: 466 KHRSEVFGFIRQQIELGRQVYVVYPLIEESEKLDYKDLMDGFESMQRAFPRPTYEIGMLH 525 Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582 G+M +K+ M F ++L+ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGR Sbjct: 526 GKMLPYEKDDEMKRFLKKETQILVATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGR 585 Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642 VGRG + S CI++ LS ++ TRL + T +GF IA+ DL+ R G++ G +QSG+ Sbjct: 586 VGRGADQSYCIMMTGYKLSTDTRTRLETMVRTNNGFEIADVDLQLRGPGDLTGTQQSGVM 645 Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 +IA ++L AR+ A+ IL +DP+L Sbjct: 646 DLMIADLAKDGAILSAARESAQAILAEDPEL 676 >gi|14572554|gb|AAK64611.1| RecG [Burkholderia cepacia] Length = 655 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 228/612 (37%), Positives = 350/612 (57%), Gaps = 27/612 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI-SQHSSFQLQKRRPYKILLNDG 97 TR IDL+ + P + D I E+ I G + +++ +++ KI +DG Sbjct: 47 TRSIDLVLHLPMRYEDETTLTPIDELLPGGIAQTEGVVFDNEVAYRPRRQLVVKIRDDDG 106 Query: 98 TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LI 156 ++ L F +K + G+++ V G ++ + MVHP + D P ++ Sbjct: 107 -AQLVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGMEMVHPAVRVVEA-DAPLPQVL 163 Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213 VY G+S +K I A+ R P+ LP IE+D L+ P++A+A I+H+P Sbjct: 164 TPVYPSTAGVSQAYLRKAIENAVERTPLPELLPPEIERDYLKPLGVPTLAQAVRILHHPG 223 Query: 214 KAKD----FEWTSPARERLAYDELLAGQIALLLM--RKQFKKEIGIP---INVEGKIAQK 264 D + + PA R+ ++ELLA Q++L ++ + +P + G + + Sbjct: 224 VDSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRSAPAMPRRAADDAGSLTTR 283 Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324 + +PF+ T +Q + +I D++ + M R+LQGDVGSGKT+VA +A A++AG QA Sbjct: 284 LYAALPFTLTGAQSRVVDEIAHDLTLPHPMQRLLQGDVGSGKTVVAALAATQAIDAGYQA 343 Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384 +MAP ILA+QH ++ + + + V + G++ +R A+E A G A ++IGTHA Sbjct: 344 ALMAPTEILAEQHARKLRAWLEPLGVSVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTHA 403 Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTL 435 + QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRTL Sbjct: 404 IIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAANGARDFQPHQLMMSATPIPRTL 463 Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495 +T D+++S I E P GR P+ T ++ R EVI R++ G++ YW+CP IEE Sbjct: 464 AMTYYADLEVSTIDELPPGRTPVLTRLVADARRGEVIARVREAALTGRQVYWVCPLIEES 523 Query: 496 KESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554 + ++ VE + +L + ++HGR+S DK +VMD+F +LL+ATTVIEVG Sbjct: 524 ETLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMDAFTRNDVQLLVATTVIEVG 583 Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614 +DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+LLY PLS RL ++ T Sbjct: 584 VDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYSGPLSLAGRERLKTMRET 643 Query: 615 EDGFLIAEEDLK 626 DGF IA DL+ Sbjct: 644 TDGFEIARRDLE 655 >gi|224824830|ref|ZP_03697937.1| ATP-dependent DNA helicase RecG [Lutiella nitroferrum 2002] gi|224603323|gb|EEG09499.1| ATP-dependent DNA helicase RecG [Lutiella nitroferrum 2002] Length = 682 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 239/643 (37%), Positives = 367/643 (57%), Gaps = 18/643 (2%) Query: 40 RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99 R DL+ + P + D + I++ + V + G + H Q + R+ + L D +G Sbjct: 29 RRFDLVLHLPLRYEDETHLYPIAQAPYGQAVLVEGEVVAHE-VQYRPRKQLLVQLEDKSG 87 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159 + L F + LK +G+++ G++++ MVHP D + V Sbjct: 88 TLMLRFIHFYPNHLKQ-LAQGQRVRALGEVRRGFRGDEMVHPKIREVLEGDPLADSLTPV 146 Query: 160 YSLPTGLSVDLFKKII---VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216 Y GL+ + +++I ++A S LPE + + A++ ++H P Sbjct: 147 YPTVNGLTQPVLRRLIHAELKAQSLSDTLPEAVR----EHHGLVPFADSIRLLHAP--TP 200 Query: 217 DFEWTS------PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270 ++ T PA +RL +DELLA Q+++ L + ++ I +G++ + ++P Sbjct: 201 EYSATQLADPALPAWQRLKFDELLAQQLSMRLAYRARRRGKAPVIAGDGRLRAALSDSLP 260 Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F+ T +Q+ + +I D++Q + M R+LQGDVGSGKT+VA ++ AA+EAG Q +MAP Sbjct: 261 FALTAAQQKVLGEITADLAQPHPMHRLLQGDVGSGKTVVAALSALAAIEAGFQVALMAPT 320 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 ILA+QHY + + I V ++G++ + + ALE++A GQA ++IGTHALFQD + Sbjct: 321 EILAEQHYLKLAAWLAPLGIEVAWLSGSLRKKQKTAALEQVASGQARLVIGTHALFQDEV 380 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + L L IVDEQHRFGV QRL L K PH L+M+ATPIPRTL ++ D+D+S I E Sbjct: 381 VFDNLGLSIVDEQHRFGVGQRLALQGKGGEPHQLMMSATPIPRTLAMSFYADLDVSVIDE 440 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P GR PI T +I R DEV+ + S G++AYW+CP IEE + ++ V+ L Sbjct: 441 LPPGRTPIVTKLINSARRDEVVAYVDRTCSGGQQAYWVCPLIEESETLQLQTAVDTHAQL 500 Query: 511 HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 E + ++HGRM +K +VM +F ++L+ATTVIEVG+DV +AS+++IE+AE Sbjct: 501 AEDLPQWGVGLVHGRMKPAEKAAVMAAFAANELQVLVATTVIEVGVDVPNASLMVIEHAE 560 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629 GLAQLHQLRGRVGRG S+C+L++ PLS+ + RL V+ DGF IA +DL R Sbjct: 561 RMGLAQLHQLRGRVGRGAAKSACVLMFDTPLSELAKARLKVIYENTDGFEIARQDLNIRG 620 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 GE LG +QSG+P A E LLE A++ A +L + P+ Sbjct: 621 PGEFLGARQSGLPMLRFADLEQDIELLEAAKELAPELLKRWPN 663 >gi|221232431|ref|YP_002511584.1| ATP-dependent DNA helicase [Streptococcus pneumoniae ATCC 700669] gi|225855125|ref|YP_002736637.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae JJA] gi|298229863|ref|ZP_06963544.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255737|ref|ZP_06979323.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503441|ref|YP_003725381.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae TCH8431/19A] gi|220674892|emb|CAR69467.1| ATP-dependent DNA helicase [Streptococcus pneumoniae ATCC 700669] gi|225723598|gb|ACO19451.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae JJA] gi|298239036|gb|ADI70167.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae TCH8431/19A] gi|332199722|gb|EGJ13797.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA41317] Length = 671 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 243/674 (36%), Positives = 385/674 (57%), Gaps = 30/674 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL K S +A +H P KD A R+ ++EL Q+ L +++ + Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQMLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ +N + + ++PF+ T++QE ++++IL DM + M R+LQGDVGSG Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QA +M P ILA+QH+E ++ N ++ ++ G++ A +R Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLIGSLKAAEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLALIIIDEQHRFGVGQRRILREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T I ++ +V+ L+ + +G +A Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + +A++HGRM +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + + Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642 Query: 664 KHILT-----QDPD 672 +I + +DP+ Sbjct: 643 SYISSIEAWQEDPE 656 >gi|154249701|ref|YP_001410526.1| ATP-dependent DNA helicase RecG [Fervidobacterium nodosum Rt17-B1] gi|154153637|gb|ABS60869.1| ATP-dependent DNA helicase RecG [Fervidobacterium nodosum Rt17-B1] Length = 776 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 251/664 (37%), Positives = 368/664 (55%), Gaps = 17/664 (2%) Query: 8 PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67 PL P+ +GVG L K+ ET DL+ Y P + DR I I E Sbjct: 100 PLDTPIKYAKGVGPSREKLLKKL-----GIET-IGDLINYFPRDYEDRRKIIPIVFIREN 153 Query: 68 RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 VT G I + LL DG ++ L +F ++ + L+ +++ V+G Sbjct: 154 EKVTTKGIIKSVEKIKKGDLVIISALLQDGISQVVLKWFNQEFKELELKQLINKEVYVSG 213 Query: 128 KIKK-LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186 K+ I + +P NS + I +Y L L+ +KII + +S + Sbjct: 214 TPKRGFFGAIEIQNPEISLSNSPERE---IIPIYPLTENLTQKTLRKIIEDNISAVCNYQ 270 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 + I ++++ + I A+ +H PR + F +R+RLAY+ELL Q+AL + RK Sbjct: 271 DVIPNEIVEIRKLLDIKRAYIGMHFPRSS--FH-QKLSRKRLAYEELLLFQLALFISRKN 327 Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 +K GI + G++A+K + ++PF T +Q A +I QD+ N M R+LQGDVGSGK Sbjct: 328 VEKIGGIAKQLSGQLAEKFVNSLPFKLTNAQIRAHNEIRQDLMSPNPMNRLLQGDVGSGK 387 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366 TLVA +A+ EAG Q+ +M P ILA QHY+ I + N I V ++ G+ Q + K Sbjct: 388 TLVAELAIIDNYEAGFQSALMVPTSILAIQHYQKIFNHLTNLGIRVALLIGSTSQKEKDK 447 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426 + +G +IIGTHAL Q+ + + L LVI+DEQHRFGV+QR +L K L+M Sbjct: 448 IKFALKNGDLDVIIGTHALIQEDVHFANLGLVIIDEQHRFGVKQREELISKGKVVDTLIM 507 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VVLSEGKKA 485 TATPIPRTL LT GD+D+S I E P GRK IKT + R EV + +K ++ G +A Sbjct: 508 TATPIPRTLSLTLYGDLDVSIIDEMPPGRKEIKTFTLKHTRAKEVYKFVKDQIIENGDQA 567 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCK 543 Y + P IE+ + N ++ + + L + + I ++HGRMSD +K VM F G K Sbjct: 568 YIVYPLIEQSDQINAKAAEDMYEKLSKEAFADIPMGLLHGRMSDFEKNEVMSKFVKGEIK 627 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++T+VIEVG+DV +A+I++IENAE FGLAQLHQLRGRVGRG + S C L+ + Sbjct: 628 ILVSTSVIEVGVDVPNATIMVIENAERFGLAQLHQLRGRVGRGSKQSYCFLIVSEA-GEE 686 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 ++ RL +T DGF +AE D++ R GE G +Q GM F +A L+ +AR+DA Sbjct: 687 AWDRLQFFASTTDGFKVAEYDMRLRGPGEFFGTRQHGMMDFKVADLISDSELIMLAREDA 746 Query: 664 KHIL 667 K I+ Sbjct: 747 KWII 750 >gi|78186238|ref|YP_374281.1| ATP-dependent DNA helicase RecG [Chlorobium luteolum DSM 273] gi|78166140|gb|ABB23238.1| ATP-dependent DNA helicase RecG [Chlorobium luteolum DSM 273] Length = 703 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 241/704 (34%), Positives = 385/704 (54%), Gaps = 39/704 (5%) Query: 11 APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70 +PLS+ +G+G K K+ +A F DL P ++DR + ++ Sbjct: 5 SPLSSLKGMGPK------KVAILHDAGLVSFEDLFELFPRRYLDRRVMKPVRDLRAGETA 58 Query: 71 TITGYISQHSSFQLQKRRP-YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 T+ G I+ S Q+ R ++ L+DG+G + L +F R G + V GK+ Sbjct: 59 TVVGTITAASVDAGQRGRSRFRATLSDGSGTLELTWF-RGVRYFARAVVPGETLAVHGKV 117 Query: 130 KKLKNRIIMVHPHYIFHNSQ-------DVN----------FPLIEAVYSLPTGLSVDLFK 172 R M HP + S D++ +P EA+ +GL + Sbjct: 118 GYFGARAQMQHPDFDRLGSDRHEDGGSDLSLYNTGRIIPLYPTTEAMKL--SGLGSRQLR 175 Query: 173 KIIVEALS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231 ++ +A + P E + + +L S +AEA+ IH P E A R+ + Sbjct: 176 SLMAQAFELQPPGARENLSRSILDSNSLMPLAEAYREIHFPSSP---ERLGIAERRMKWT 232 Query: 232 ELLAGQIALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289 EL Q+ L +R+ + + G+ ++ ++P+ T +Q+ AI++I +D+ Sbjct: 233 ELFYAQL-LFALRRHTARHLRQAAVFTHSGEYTSRLYASLPYELTAAQKDAIREIYRDLR 291 Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349 + M R+LQGDVGSGKT VA+ +MA A + Q+V MAP ILA QH+ ++++ + Sbjct: 292 SGSPMQRLLQGDVGSGKTAVAMFSMALAADNKLQSVFMAPTEILAVQHWLSMRRFFEPLG 351 Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409 + V + +G P+ R + L R+ G H+ +GTHAL +D+++Y +L LVI+DEQHRFGV Sbjct: 352 LEVALFSGRQPKRLREELLLRLREGDVHVAVGTHALIEDAVRYRELGLVIIDEQHRFGVL 411 Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469 QR L +KA+ PHVLLMTATPIPRTL + GD+D+S I + PAGR+P+KT++ P + Sbjct: 412 QRKALQEKASNPHVLLMTATPIPRTLTMGVFGDLDVSVIRQMPAGRRPVKTIVRPESEQA 471 Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSD 527 +V + L+ +++G + Y + P +E ++++ ++ VE F L + +IHG+MS Sbjct: 472 KVHQFLRREIADGHQGYIVYPLVEASEKTDLQAAVESFGELSGAVFPDLRLGLIHGQMSP 531 Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587 +K+ VM F+ G +L+ TTVIEVG+DV +A++II+E+AE FGLAQLHQLRGRVGRG+ Sbjct: 532 EEKDGVMQRFRTGELHILVGTTVIEVGVDVPNATVIIVEHAERFGLAQLHQLRGRVGRGQ 591 Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLI 646 S C LLY L+ + RL +++T DGF+I+E D + R G +LG +QSG + I Sbjct: 592 HPSHCFLLYG-KLTGDGRERLQAMESTSDGFVISEMDARIRGAGNVLGKEQSGSLSGLKI 650 Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690 A L +++ AR A ++ D L + +R Y+ +Y Sbjct: 651 ADLSLDFDIMQSARSAAFALVEADSRLALPENEPVR-RWYMDRY 693 >gi|228473081|ref|ZP_04057838.1| ATP-dependent DNA helicase RecG [Capnocytophaga gingivalis ATCC 33624] gi|228275663|gb|EEK14440.1| ATP-dependent DNA helicase RecG [Capnocytophaga gingivalis ATCC 33624] Length = 698 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 254/685 (37%), Positives = 378/685 (55%), Gaps = 30/685 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L P+ RGVG + +L L + N F DLL P+ +ID+ KI ++ E Sbjct: 2 LETPIEYLRGVGPQRALLLKSELQVAN-----FQDLLHLFPTRYIDKTQYYKIQDLRETT 56 Query: 69 I-VTITGYISQHSSFQLQKRRPYKIL--LNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 V + G I + + + + +++ DGTG + L++F R ++ +K+ + Sbjct: 57 TEVQVVGRIIHLKTVEGKNKTQQRLVATFTDGTGNMELVWF-RPSQWIKDHLLLNVPYVI 115 Query: 126 TGKIKKLKNRIIMVHP---------HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIV 176 GK M HP H + N Q V +P E + G++ + +K+I Sbjct: 116 FGKCTPFSGVFSMAHPEMETLEEHQHSLQGNIQAV-YPSTEKLTK--KGITQKVIRKLIE 172 Query: 177 EALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235 + E + LL EA IH P+ E S A+ RL +EL Sbjct: 173 SLFQEVGKNFFETLPPQLLTSLRLLPKGEALFQIHFPQSQ---ELLSKAQFRLKLEELFY 229 Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRM 294 Q+ L+ KK G P + G +++PF T +Q+ IK+I DM+ +M Sbjct: 230 IQLQLIQKNYLNKKLKGYPFPLVGDYFNTFYHKHLPFPLTNAQKRVIKEIRSDMATGAQM 289 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R+LQGDVG+GKT+VAL AM A++ QA +MAP ILAQQHY+ I I + Sbjct: 290 NRLLQGDVGAGKTIVALFAMLLALDNQYQACLMAPTEILAQQHYQSIASLLAPMDIQPAL 349 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 +TG+ RRK LE + +GQ I+IGTHAL +D ++++ L L I+DEQHRFGV+QR KL Sbjct: 350 LTGSTKTKERRKILEELENGQLQIVIGTHALLEDKVKFHNLGLSIIDEQHRFGVEQRSKL 409 Query: 415 TQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 K A PHVL+M+ATPIPRTL ++ GD+D+S I E P GRKPI+T+ +V + Sbjct: 410 WHKNALPPHVLIMSATPIPRTLAMSLYGDLDVSVIDELPPGRKPIQTLHQYDTHRAKVYQ 469 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDK 530 L +++G++ Y + P IEE + +F+++ E + L F +IA++HG++ +K Sbjct: 470 FLHDQIAKGRQVYVVYPLIEESEALSFKNLSEGYQQLCSAFPPPKYTIAMVHGQLKPEEK 529 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 E+ M F G ++++ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG E S Sbjct: 530 EAQMQLFVEGKAQIMVATTVIEVGVNVPNASVMLIESAERFGLSQLHQLRGRVGRGAEQS 589 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 CIL+ LS +S TR+ + T DGF IAE DLK R G+++G +QSG+ IA Sbjct: 590 YCILMTDVKLSHDSRTRMETMVATCDGFQIAEVDLKLRGPGDLMGRQQSGVLSLKIADLV 649 Query: 651 LHDSLLEIARKDAKHILTQDPDLTS 675 LL++AR A ++ DP+LT Sbjct: 650 KDSQLLKVARDYATDLIRVDPELTD 674 >gi|121634295|ref|YP_974540.1| putative DNA helicase [Neisseria meningitidis FAM18] gi|120866001|emb|CAM09738.1| putative DNA helicase [Neisseria meningitidis FAM18] gi|325131701|gb|EGC54406.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis M6190] gi|325137717|gb|EGC60294.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis ES14902] Length = 680 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 229/600 (38%), Positives = 341/600 (56%), Gaps = 7/600 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H + R+ + + DG+G + L F + G++I G+IK M Sbjct: 65 HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP + L VY GL+ ++II AL P L + + LL + Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182 Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 P +AE+ ++H+P + + T PA +RL +DELLA Q+++ L R++ Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAA 242 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + +G + Q + + +PF+ T +QE + +I +DM+Q M R+LQGDVGSGKT+VA ++ Sbjct: 243 LGGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSA 302 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A+E+G Q +MAP ILA+QH+ K++ + I V + G++ + + +A ++A G Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 I +GTHALF D + ++ L L IVDEQHRFGV QRL L K H L+M+ATPIPRT Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I E P GR PIKT ++ R EV + +G++AYW+CP IEE Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEE 482 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ E L +I ++HGRM +K VM F G +L+ATTVIEV Sbjct: 483 SETLQLQTATETLEQLQTALPELNIGLVHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEV 542 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +A++++IE+AE GLAQLHQLRGRVGRG S C+LL+ PLS+ + RL V+ Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYE 602 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA +DL R GE LG +QSG+P A+ E LLE AR+ A ++ Q+P++ Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQAREIAPILIEQNPEI 662 >gi|332363900|gb|EGJ41679.1| DNA helicase RecG [Streptococcus sanguinis SK355] Length = 671 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 246/671 (36%), Positives = 381/671 (56%), Gaps = 30/671 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL+ GVG K + +K+ ET DLL Y P + D + + ++ + Sbjct: 3 LHQPLTVLPGVGPKSAEKFAKL-----GLET-LQDLLLYFPFRYEDFKSK-NVLDLEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 I+G + ++ Q + ++ GE+ L + L + G I V GK Sbjct: 56 KAVISGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184 K K + + + +D ++ VY L G+S V L K + L L Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDLL-- 166 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 L E + LL+ S EA +H P KDF A R+ ++EL Q+ L +++ Sbjct: 167 LEENLPHPLLELYQLVSRVEAVRAMHFP---KDFADYKQALRRVKFEELFYFQMQLQVLK 223 Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 ++ K G+ I+ + +++PF T +QE ++ +ILQD+ M R+LQGDVG Sbjct: 224 RETKAVSNGLKIDWRSDTVAEKKQSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVG 283 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA +AM A AG Q+ +M P ILA+QH++ + + ++ + ++TG M A Sbjct: 284 SGKTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAE 341 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RRK LE I GQ +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR L +K P V Sbjct: 342 RRKTLEAIEKGQMDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDV 401 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T + +++ V++ LK L +G Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLKKELHKGA 461 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541 + Y+I P IEE + + ++ + L +F + +A++HG+M +K+++M FK G Sbjct: 462 QVYFISPLIEESEALDLKNAIALEEELTAYFGQQAQVALLHGKMKSEEKDAIMQDFKEGR 521 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S +L+ +P + Sbjct: 522 TDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-T 580 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 ++ R+ ++ T DGFL+AEEDLK R GEI G +QSG+P+F +A +LE ARK Sbjct: 581 ESGKRRMKIMTETIDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640 Query: 662 DAKHILTQDPD 672 A I T DP+ Sbjct: 641 VASQI-TADPN 650 >gi|15903582|ref|NP_359132.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae R6] gi|1150620|emb|CAA90280.1| MmsA [Streptococcus pneumoniae] gi|15459203|gb|AAL00343.1| Branch migration of Holliday junctions, junction-specific DNA helicase [Streptococcus pneumoniae R6] gi|1588991|prf||2209420A mmsA gene Length = 671 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 244/674 (36%), Positives = 384/674 (56%), Gaps = 30/674 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL K S +A +H P KD A R+ + EL Q+ L ++ + Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFAELFYFQMQLQTLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ +N + + ++PF+ T++QE ++++IL DM + M R+LQGDVGSG Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKASLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QA +M P ILA+QH+E ++ N ++ ++TG++ A +R Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T I ++ +V+ L+ + +G +A Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + +A++HGRM +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + + Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642 Query: 664 KHILT-----QDPD 672 +I + +DP+ Sbjct: 643 SYISSIEAWQEDPE 656 >gi|313676091|ref|YP_004054087.1| ATP-dependent DNA helicase recG [Marivirga tractuosa DSM 4126] gi|312942789|gb|ADR21979.1| ATP-dependent DNA helicase RecG [Marivirga tractuosa DSM 4126] Length = 697 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 246/690 (35%), Positives = 384/690 (55%), Gaps = 34/690 (4%) Query: 11 APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI- 69 P+ +G+G + + ++K + + DLL ++P + DR K+ E++ E Sbjct: 7 TPIEFLKGLGPQKAAHINKELGIFT-----YADLLQHYPFRYEDRTKFYKVRELNAEMSN 61 Query: 70 VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 V + G I +++ + D TG + L++F + G V G+ Sbjct: 62 VQVKGQIRSKQLIGAGRKQRLAVQFADETGIMELVWF-SGINWISPKLRTGVDYVVYGQP 120 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGL------SVDLFK---KIIVEALS 180 K+ ++ M HP ++ VYS L S +FK ++ EA + Sbjct: 121 KRFGSKYTMAHPELEILTPAVSQNEFLQPVYSTTETLRKRYLDSKAIFKFQKTLLKEAYN 180 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 R+P E + +LQ+ F + +A IH P K+ + AR R+ +DE Q+ L Sbjct: 181 RIP---ETLPPHILQQYGFLAKRDAVVQIHVP---KNQQLLQKARFRMKFDEFFFMQLRL 234 Query: 241 LLMRK----QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 L+ +K +FK ++ ++ + Q ++PF T +Q+ IK+I D +M R Sbjct: 235 LMQKKVRLEKFKGQLLQKTDLLTEFYQS---HLPFDLTGAQKKVIKEIFSDFKSGKQMNR 291 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 +LQGDVGSGKT+VA I+ A+++G Q +MAP ILA QHYE +K++ + + ++T Sbjct: 292 LLQGDVGSGKTIVAFISALIAIDSGAQVALMAPTQILANQHYEGLKEFADKIGVTIALLT 351 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G+ RR+ E + G+ I++GTHAL ++ +Q+ L L IVDEQHR+GV QR +L + Sbjct: 352 GSTKTKARREIHENLKSGELKILVGTHALLEEVVQFQNLGLAIVDEQHRYGVAQRARLWK 411 Query: 417 KAT--APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV-IIPINRIDEVIE 473 K PHVL+MTATPIPRTL ++ GD+DIS I E P GRKPIKT+ NR+ ++ Sbjct: 412 KNENFVPHVLIMTATPIPRTLSMSVYGDLDISIIDELPKGRKPIKTIHQYDANRL-KLNG 470 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532 LK + +G++ Y + P IEE ++ + + +++ + S+ F I+I+HG+M DK+ Sbjct: 471 FLKKEIEKGRQVYVVYPLIEESEKLDLKDLMDGYESIARSFPEYPISIVHGKMKAADKDF 530 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 M F G KL++ATTVIEVG++V +AS+++IENAE FGLAQLHQLRGRVGRG E S C Sbjct: 531 EMARFVKGETKLMVATTVIEVGVNVPNASVMVIENAERFGLAQLHQLRGRVGRGAEQSYC 590 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +L+ LSK + TR+ + T DGF IA+ D+ R G+++G +QSG LI Sbjct: 591 VLVTSYKLSKEARTRVETMVRTTDGFEIAQVDMNLRGPGDMMGTQQSGQLDLLIGDLRED 650 Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIR 682 + +L IAR+ A+ I+ +DP+L S IR Sbjct: 651 EPILSIARQSAQAIIAKDPNLESEENALIR 680 >gi|94676686|ref|YP_588583.1| ATP-dependent DNA helicase RecG [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219836|gb|ABF13995.1| ATP-dependent DNA helicase RecG [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 699 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 242/655 (36%), Positives = 369/655 (56%), Gaps = 33/655 (5%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+ GVG ++K+ G N D+L + P+ + DR I + +T Sbjct: 11 PLTALYGVGTN---LINKLTKLGLEN---LQDVLLHLPTRYEDRTKIFLIRNAPIGKFIT 64 Query: 72 ITGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 I G + S + ++ L D +G +T+LFF M K G+ +T GKI Sbjct: 65 IQGIVLDSQISINIHRKSILNCRLQDDSGVLTILFFNGNLAMKKG-LCPGKLVTAYGKIY 123 Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPL--IEAVYSLPTGLSVDLFKKIIVEALSRLP----- 183 K M+HP Y H+++ N L + +Y G+ + I +AL L Sbjct: 124 LEKKGARMIHPEYCIHSNRQGNKLLSSLTPIYPTTKGVDQTTLRAITDQALKFLDQTTVS 183 Query: 184 -VLPEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWT-SPARERLAYDELLAGQI 238 +LP + L+ S++EA + +H P D + PA+ RL +EL+A + Sbjct: 184 ELLPPQLSSGLM------SLSEALHNLHRPPTNISISDLKLGLYPAQRRLILEELIAYYL 237 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 +LL R KK + +P+N + + Q + ++PFS T +Q+ A+ +I QD+++ M+R+L Sbjct: 238 SLLSARTVEKKLLALPLNNKTDLIQCFISSLPFSLTIAQQRAVMEIDQDLARNIPMMRLL 297 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKTLVA +A A+ Q V+M P +LA+QH + + I V +TG Sbjct: 298 QGDVGSGKTLVAALAALRAISNSSQVVLMTPTELLAEQHTKNFCNWFTPLGITVSWLTGK 357 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 R LE IA G +++GT ALFQ +Q+ +L LVI+DEQHRFGV QRL L +K Sbjct: 358 QKGKIREAQLESIASGHVAMVVGTQALFQKKVQFSRLSLVIIDEQHRFGVHQRLTLWEKG 417 Query: 419 T----APHVLLMTATPIPRTLVL-TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 + PH L++TATPIPRTL + TS + D S I E P+GR P+ T+ I NR E+I+ Sbjct: 418 SQHGFQPHQLILTATPIPRTLAMTTSCINFDTSVIDELPSGRVPVTTIAITNNRRHEIIQ 477 Query: 474 RL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKE 531 RL K+ L + ++ YW+C +IE+ + +SV + + + I +IHGRM +K+ Sbjct: 478 RLEKLCLQDKRQVYWVCTRIEKSTQRELQSVKATWEEIRSYLPELQIGLIHGRMKAQEKQ 537 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 +M +F+ G +LL+ATTVIEVG+D+ +AS+IIIENAE GLAQLHQLRGRVGR S Sbjct: 538 QLMQAFQAGKIRLLVATTVIEVGVDIPNASLIIIENAERLGLAQLHQLRGRVGRAIVASH 597 Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646 C+L+Y+ PL+K + R+ +++++ +GF+IA+ DL R G++ G +Q+G +F I Sbjct: 598 CVLIYNSPLNKAAQQRIKIIRDSNNGFVIAQHDLDIRGPGKLFGTRQTGQTEFRI 652 >gi|148989348|ref|ZP_01820716.1| hypothetical protein CGSSp6BS73_07619 [Streptococcus pneumoniae SP6-BS73] gi|149021207|ref|ZP_01835453.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP23-BS72] gi|147925098|gb|EDK76178.1| hypothetical protein CGSSp6BS73_07619 [Streptococcus pneumoniae SP6-BS73] gi|147930308|gb|EDK81292.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP23-BS72] Length = 671 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 241/663 (36%), Positives = 380/663 (57%), Gaps = 25/663 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL K S +A +H P KD A R+ ++EL Q+ L ++ + Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ ++ + + ++PF+ T++QE ++++IL DM + M R+LQGDVGSG Sbjct: 226 NRVQGSGLVLDWSQEKVTAVKASLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QA +M P ILA+QH+E ++ N ++ ++TG++ A +R Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T I ++ +V+ L+ + +G +A Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + +A++HGRM +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + + Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642 Query: 664 KHI 666 +I Sbjct: 643 SYI 645 >gi|120436677|ref|YP_862363.1| ATP-dependent DNA helicase RecG [Gramella forsetii KT0803] gi|117578827|emb|CAL67296.1| ATP-dependent DNA helicase RecG [Gramella forsetii KT0803] Length = 699 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 253/690 (36%), Positives = 396/690 (57%), Gaps = 41/690 (5%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 N L P+ +GVG S L K +N + DL+ + P+ +ID+ KI+++ Sbjct: 4 NLLQTPIEYLKGVGPNRSEVLKKELNI-----QYYRDLINFFPNRYIDKTGFYKINQLQR 58 Query: 67 ERI-VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKI 123 V I G I+ ++++R +++ + D TG++ L++F R + ++ Sbjct: 59 NSSEVQIVGKITHLK--MVEQKRGKRLVADFIDDTGKMELIWF-RGHKWIRENLKLNTPY 115 Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPT-------GLSVDLFKKII 175 + GK M HP N P ++ +Y P+ G++ + K++ Sbjct: 116 VIFGKTNSYNGAFSMPHPEMELVADYKKNLRPAMQPIY--PSTEMLGKKGITNRVIMKLM 173 Query: 176 VEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234 E L + + E + DL+ + S AEA IH P K+ E + A+ RL ++EL Sbjct: 174 QEVLQQTGLKFSESLNADLIDELKLISKAEALFNIHFP---KNQELLAKAQFRLKFEELF 230 Query: 235 AGQIALLLMRKQFKKEI-GIPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKN 292 Q+ LL K++I G + G+ + ++PF T +Q+ IK+I DM Sbjct: 231 FIQLQLLRKNMLHKQKIKGFNFDQIGEYFNNFYQEHLPFDLTGAQKRVIKEIRADMGSGA 290 Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352 +M R+LQGDVGSGKT+VAL++M A++ G QA +MAP IL+ QHY + + ++ I + Sbjct: 291 QMNRLLQGDVGSGKTIVALMSMLIALDNGFQACLMAPTEILSIQHYHGLAELCKDLNIEI 350 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 ++TG+ A RR+ E++ +G+ I+IGTHAL +D +++ L L ++DEQHRFGV QR Sbjct: 351 FLLTGSTKTAKRREIHEKLENGEIDILIGTHALLEDKVKFKNLGLAVIDEQHRFGVAQRA 410 Query: 413 KLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471 KL +K PHVL+MTATPIPRTL ++ GD+DIS I E P GRKP+KTV +R D Sbjct: 411 KLWKKNHIPPHVLVMTATPIPRTLAMSLYGDLDISVIDELPPGRKPVKTV----HRFDS- 465 Query: 472 IERLKVV------LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGR 524 RLKV + +G++ Y + P I+E ++ +++ +++ + S+ F I+I+HG+ Sbjct: 466 -NRLKVFRFIKEEVQKGRQVYVVYPLIQESEKMDYKDLMDGYESIAREFPEFQISIVHGQ 524 Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584 M DK+ MD F ++++ATTVIEVG+++ +AS++IIE+AE FGL+QLHQLRGRVG Sbjct: 525 MKPADKDYEMDRFVRAETQIMVATTVIEVGVNIPNASVMIIESAERFGLSQLHQLRGRVG 584 Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644 RG E S CIL+ LS +S TRL + +T DGF IAE DLK R G+++G +QSG+ Sbjct: 585 RGAEQSFCILMTGHKLSNDSKTRLETMTSTNDGFEIAEVDLKLRGPGDLMGTQQSGVLNL 644 Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPDLT 674 IA +S+L++AR A +L DP+L+ Sbjct: 645 KIADIVKDNSILQLARNYASRLLKADPNLS 674 >gi|189501758|ref|YP_001957475.1| ATP-dependent DNA helicase RecG [Candidatus Amoebophilus asiaticus 5a2] gi|189497199|gb|ACE05746.1| hypothetical protein Aasi_0311 [Candidatus Amoebophilus asiaticus 5a2] Length = 695 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 241/676 (35%), Positives = 382/676 (56%), Gaps = 24/676 (3%) Query: 11 APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-I 69 P+ +GVG K ++ L + + N DL+ ++P + DR I+++ E+ Sbjct: 7 TPIEYLKGVGPKKAVLLQEELQIYN-----LADLIQHYPFRYEDRTCFHNIADVREDLPY 61 Query: 70 VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 V + G I K+R L D TG I+L++F + +LK + G + GK Sbjct: 62 VQLKGVIQSPKIITTGKKRLVATL-KDETGVISLVWFQKINGILKQLR-PGILYQLFGKP 119 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLF-----KKIIVEALSRLPV 184 + +VHP +Q + VY L +++ + + P+ Sbjct: 120 TVYNSCYTIVHPEMEIFTAQTTQEKTLIPVYHTTEKLKASYIDSKYIRRVQANLIEQFPI 179 Query: 185 -LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 LPE + +DL + A IH P E AR RL ++EL Q+ LL Sbjct: 180 HLPETLPEDLCAQYKIIDKKTALANIHFPATP---EILQKARFRLKFEELFYVQLRLLQA 236 Query: 244 RK-QFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 R+ + +K+IG + K+ Q +N IPF T +Q+ +K+I D+ +M R+LQGD Sbjct: 237 RQLRLEKQIGAAYK-DTKLLQDFYQNVIPFELTGAQKRVVKEIYADLKSGKQMNRLLQGD 295 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VA ++M + +G Q +MAP IL +QHY+ ++++ + + I+TG+ Sbjct: 296 VGSGKTMVAFLSMLIVLGSGAQVAMMAPTEILVEQHYKKLQEFAAPLSLQIGILTGSTKT 355 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK---A 418 + RRK L+ +A G II+GTH+L +++ + L L ++DEQHRFGV QR K Q+ Sbjct: 356 SERRKILDELAQGTLQIIVGTHSLINENVVFKNLGLAVIDEQHRFGVMQRAKFWQRDDVQ 415 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PHVL+M+ATPIPRTL +T GD+D+S + E PAGRKPIKTV + V +K Sbjct: 416 PVPHVLIMSATPIPRTLAMTLYGDLDVSVVDEMPAGRKPIKTVHYYDAQRLRVFRFVKDQ 475 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 +S G++ Y + P IEE ++ +++++++ + S+ F ++I+HGRM DK+ M F Sbjct: 476 ISLGRQVYVVYPLIEESEKMDYKNLIDGYESICRAFPEVPLSIVHGRMKASDKDYEMQRF 535 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 G K+++ATTVIEVG++V +AS+++IENA+ FGL+QLHQLRGRVGRG++ + CIL+ Sbjct: 536 VKGETKIMVATTVIEVGVNVPNASVMVIENADRFGLSQLHQLRGRVGRGQDQAYCILMTD 595 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 L+K S R+ L +T +GF IA+ DL+ R G+++G++QSG+ + IA +L+ Sbjct: 596 YKLNKKSRERIKALVHTNNGFEIADMDLRLRGPGDLMGVQQSGLLELKIADVARDGHILQ 655 Query: 658 IARKDAKHILTQDPDL 673 IAR+ AK I+ +DP L Sbjct: 656 IAREAAKEIIKKDPML 671 >gi|325979039|ref|YP_004288755.1| ATP-dependent DNA helicase RecG [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178967|emb|CBZ49011.1| ATP-dependent DNA helicase RecG [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 671 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 245/635 (38%), Positives = 365/635 (57%), Gaps = 25/635 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGE 100 DLL Y+P + D + ++SE+++ ITG + ++ Q KR + G Sbjct: 31 DLLLYYPFRYEDFKSK-RVSELADGEKAVITGTVVTPANVQYYGYKRNRLSFKIKQGEAV 89 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160 I + FF + L + G I + GK LK+ + + I +D P VY Sbjct: 90 IAISFFNQP--YLADKVELGSDIAIFGKWDALKSAVTGMK---ILAQVEDDMQP----VY 140 Query: 161 SLPTGLSVDLFKKIIVEA--LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 + G+S + K I A + LPE + + LL K A+A +H P KD Sbjct: 141 RVAQGISQNALVKAIKSAFEIGAQNWLPENLPQLLLDKYRLLGRAQATAAMHFP---KDL 197 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINV-EGKIAQKILRNIPFSPTKS 276 A R+ ++EL Q+ L ++ K E G+ I E K+A KI +PF+ T Sbjct: 198 AEYKQALRRIKFEELFYFQMNLQALKADNKSEANGLAIAYDEQKVADKIAA-LPFTLTGG 256 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q ++ DIL DM M R+LQGDVGSGKT+VA +AM A AG Q+ +M P ILA+Q Sbjct: 257 QRRSLDDILADMRSGGHMNRLLQGDVGSGKTVVASLAMYATYTAGFQSALMVPTEILAEQ 316 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 H+E + + + I I+T M A ++ AL IA G +I+GTHAL QD++ Y++L Sbjct: 317 HFESLTQLFPDLSI--AILTSGMKTAAKQAALSAIADGSVDMIVGTHALIQDAVTYHRLG 374 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 LVI DEQHRFGV QR +K P VL+MTATPIPRTL +T+ G++D+S I E PAGRK Sbjct: 375 LVITDEQHRFGVNQRRVFREKGENPDVLMMTATPIPRTLAITAFGEMDVSIIDELPAGRK 434 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 PI T + +++ V++ +K L +G +AY I P IEE + + ++ V L +F Sbjct: 435 PIITRWVKHEQLEVVLDWVKKELQKGAQAYVISPLIEESESLDLKNAVALHEELSAYFAD 494 Query: 517 S--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 S +A++HGRM + +KE++M FK ++L++TTVIEVG++V +A+I+II +A+ FGL+ Sbjct: 495 SATVALMHGRMKNDEKEAIMQDFKAQKSQVLVSTTVIEVGVNVPNATIMIIMDADRFGLS 554 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG++ S IL+ +P ++ R+ ++ T DGF++AE DLK R GEI Sbjct: 555 QLHQLRGRVGRGDKQSYAILVANPK-TQTGKERMKIMTETTDGFVLAEADLKMRGSGEIF 613 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669 G +QSG+P+F +A ++LE AR+ A I+++ Sbjct: 614 GTRQSGIPEFQVADIVEDYNILEEARRVASQIVSE 648 >gi|325693569|gb|EGD35488.1| DNA helicase RecG [Streptococcus sanguinis SK150] Length = 671 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 240/671 (35%), Positives = 384/671 (57%), Gaps = 30/671 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL+ GVG K + +K+ ET DLL Y P + D + + ++ + Sbjct: 3 LHQPLTVLPGVGPKSAEKFTKL-----GLET-LQDLLLYFPFRYEDFKSK-NVLDLEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + ++ Q + ++ GE+ L + L + G + V GK Sbjct: 56 KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVVLAVNFFNQPYLADKIEVGANVAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184 K K + + + +D ++ VY L G+S V L K + L L Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDLL-- 166 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 L E + + LL++ S EA +H P+ D++ A R+ ++EL Q+ L +++ Sbjct: 167 LEENLPQPLLERYQLVSRVEAVRAMHFPKDLADYK---QALRRVKFEELFYFQMQLQVLK 223 Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 ++ K G+ I+ + + +++PF T +QE ++ +IL D+ M R+LQGDVG Sbjct: 224 RETKAVSNGLKIDWQSDAVAEKKQSLPFELTSAQERSLTEILHDLRSPGHMNRLLQGDVG 283 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA +AM A AG Q+ +M P ILA+QH++ + + ++ + ++TG M A Sbjct: 284 SGKTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAE 341 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L I +GQ +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR L +K P V Sbjct: 342 RRETLAAIENGQVDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDV 401 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T + +++ V++ LK L +G Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLKKELHKGA 461 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541 + Y+I P IEE + + ++ + L +F + +A++HG+M +KE++M FK G Sbjct: 462 QIYFISPLIEESEALDLKNAIALEEELTAYFGQQAKVALLHGKMKSEEKEAIMQDFKEGQ 521 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S +L+ +P + Sbjct: 522 TDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-T 580 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 ++ R+ ++ T DGFL+AEEDLK R GEI G +QSG+P+F +A +LE ARK Sbjct: 581 ESGKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640 Query: 662 DAKHILTQDPD 672 A I T DP+ Sbjct: 641 VASQI-TADPN 650 >gi|157150698|ref|YP_001449735.1| ATP-dependent DNA helicase RecG [Streptococcus gordonii str. Challis substr. CH1] gi|157075492|gb|ABV10175.1| ATP-dependent DNA helicase RecG [Streptococcus gordonii str. Challis substr. CH1] Length = 671 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 245/676 (36%), Positives = 389/676 (57%), Gaps = 34/676 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PLS GVG K + +K+ ET DLL Y P + D + ++ ++ + Sbjct: 3 LHQPLSVLPGVGPKSAEKFAKL-----GIET-LQDLLLYFPFRYEDFQSK-QVLDLEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 I+G ++ ++ Q + ++ + GE+ L + L + G I V GK Sbjct: 56 KAVISGIVATPANVQYYGFKRNRLRFSIKQGEVILAVNFFNQPYLADKIEVGANIAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184 K K + + + +D ++ VY + G+S + L K + L L Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRVAQGISQISLIKLIKTAFDQGLDLL-- 166 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 + E + + LL++ S AEA +H P KD A R+ ++EL Q+ L +++ Sbjct: 167 IEENLPQVLLERYHLLSRAEAVRAMHFP---KDLAEYKQALRRVKFEELFYFQMQLQVLK 223 Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 + K G+ ++ + + Q+ +PF T +QE A+ +IL D+ M R+LQGDVG Sbjct: 224 METKDVSNGLVLDWQEEQLQEKKSQLPFPLTGAQERALAEILSDLKSPAHMNRLLQGDVG 283 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA +AM A AG Q+ +M P ILA+QH+E + + + ++ ++TG+M A Sbjct: 284 SGKTVVAGLAMYAVYTAGYQSALMVPTEILAEQHFESLSQLFPDLKLA--LLTGSMKTAE 341 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 R++ L I GQ ++IGTHAL QD +QY++L LVIVDEQHRFGV QR L +K P V Sbjct: 342 RKETLLAIELGQVDMVIGTHALIQDGVQYHRLGLVIVDEQHRFGVAQRRILREKGDNPDV 401 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T + +++ V++ +K L +G Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWIKKELVKGA 461 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541 + Y+I P IEE + + ++ ++ L +F + ++++HG+M +KE++M +FKN Sbjct: 462 QVYFISPLIEESEALDLKNAIDLEEELQAYFGGDARVSLLHGKMKSDEKEAIMQAFKNKE 521 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L++TTVIEVG++V +A+I++I +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + Sbjct: 522 VDILVSTTVIEVGVNVPNATIMVIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-T 580 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 ++ R+ ++ T DGF++AEEDLK R GEI G +QSG+P+F +A +LE ARK Sbjct: 581 ESGKKRMKIMTETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640 Query: 662 DAKHILT-----QDPD 672 A I+ QDPD Sbjct: 641 VASQIVQDRHWRQDPD 656 >gi|307707070|ref|ZP_07643867.1| ATP-dependent DNA helicase RecG [Streptococcus mitis SK321] gi|307617596|gb|EFN96766.1| ATP-dependent DNA helicase RecG [Streptococcus mitis SK321] Length = 671 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 241/663 (36%), Positives = 378/663 (57%), Gaps = 25/663 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K + G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYVKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL K S +A +H P KD A R+ ++EL Q+ L ++ + Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ +N + + N+PF+ T +QE ++++IL DM + M R+LQGDVGSG Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKENLPFALTPAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QA +M P ILA+QH+E ++ + ++ ++TG++ A +R Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQSLFPDLKLA--LLTGSLKTAEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LE IA G+A +IIGTHAL QD + Y +L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T I ++ +V+ L+ + +G +A Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + +A++HG+M +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQDFKEKKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG + S +L+ +P + + Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGYKQSYAVLVANPK-TDS 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642 Query: 664 KHI 666 +I Sbjct: 643 SYI 645 >gi|237649235|ref|ZP_04523487.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae CCRI 1974] gi|237821995|ref|ZP_04597840.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae CCRI 1974M2] Length = 671 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 243/674 (36%), Positives = 385/674 (57%), Gaps = 30/674 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL K S +A +H P KD A R+ ++EL Q+ L +++ + Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQMLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ +N + + ++PF+ T++QE ++++IL DM + M R+LQGDVGSG Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QA +M P ILA+QH+E ++ N ++ ++TG++ A +R Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T I ++ +V+ L+ + + +A Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKASQA 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + +A++HGRM +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + + Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642 Query: 664 KHILT-----QDPD 672 +I + +DP+ Sbjct: 643 SYISSIEAWQEDPE 656 >gi|169834385|ref|YP_001695073.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae Hungary19A-6] gi|168996887|gb|ACA37499.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae Hungary19A-6] Length = 671 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 241/663 (36%), Positives = 380/663 (57%), Gaps = 25/663 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKASL---NGMKVLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL K S +A +H P KD A R+ ++EL Q+ L ++ + Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ ++ + + ++PF+ T++QE ++++IL DM + M R+LQGDVGSG Sbjct: 226 NRVQGSGLVLDWSQEKVTAVKASLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QA +M P ILA+QH+E ++ N ++ ++TG++ A +R Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T I ++ +V+ L+ + +G +A Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + +A++HGRM +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + + Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642 Query: 664 KHI 666 +I Sbjct: 643 SYI 645 >gi|186685619|ref|YP_001868815.1| ATP-dependent DNA helicase RecG [Nostoc punctiforme PCC 73102] gi|186468071|gb|ACC83872.1| ATP-dependent DNA helicase RecG [Nostoc punctiforme PCC 73102] Length = 831 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 231/647 (35%), Positives = 374/647 (57%), Gaps = 23/647 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99 DLLFY+P ID + I E+ VTI + + + F K + IL + D +G Sbjct: 162 DLLFYYPRDHIDYARQVNIRELQAGETVTIVATVKRCNCFSSPKNQKLSILELVVKDNSG 221 Query: 100 EITLLFFYRKT--------EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQD 150 +I + FY T E LK + G + G +K+ K + + +P + N D Sbjct: 222 QIKIGRFYAGTRFSSRAWQESLKRRYPVGSILAACGLVKESKYGLTLDNPELEVLANPGD 281 Query: 151 ----VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206 +N + +Y L G+ + ++ ++ AL L + + L QK + +A Sbjct: 282 SIESLNIGRVVPIYGLTEGVVANTVRQAVIAALPAAANLKDPLPSGLRQKYGLMELKDAI 341 Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKI 265 IH P + + AR RL +DE Q+ LL ++Q + I V G++ +K Sbjct: 342 ANIHFPSDSAALQV---ARRRLVFDEFFYLQLGLLQRQQQARAIQTSAILVPRGQLVEKF 398 Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 +PF T +Q+ + DIL D+ + M R++QGDVGSGKT+VA++A+ AA+++G QA Sbjct: 399 HEILPFKLTGAQQRVLNDILNDLQKPVPMNRLVQGDVGSGKTVVAVLAILAAIQSGYQAA 458 Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +MAP +LA+QHY + + + VE++TG+ A RR+ ++ G+ +++GTHAL Sbjct: 459 LMAPTEVLAEQHYRKLVSWFNLLHLPVELLTGSTKTAKRRQIHSQLGTGELPLLVGTHAL 518 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445 QDS+ + +L LV++DEQHRFGV+QR +L QK PHVL MTATPIPRTL LT GD+D+ Sbjct: 519 IQDSVNFQQLGLVVIDEQHRFGVEQRARLQQKGEQPHVLTMTATPIPRTLALTIHGDLDV 578 Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 S+I E P GR+ I+T ++ + + + ++ + +G++ Y + P +EE ++ + RS V+ Sbjct: 579 SQIDELPPGRQKIQTTVLSGQQRNHAYDLIRREIVQGRQVYVVLPLVEESEKLDLRSAVD 638 Query: 506 RFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 L E + ++HGRMS +K+ + F++ ++L++TTV+EVG+DV +A+++ Sbjct: 639 EHQKLQESVFPDFQVGLLHGRMSSAEKDESITKFRDNQTQVLVSTTVVEVGVDVPNATVM 698 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623 +IENAE FGL+QLHQLRGRVGR S C+L+ S ++ RL VL+ ++DGF I+E Sbjct: 699 LIENAERFGLSQLHQLRGRVGRDAAQSYCLLM-SSSRSPDAQQRLKVLEQSQDGFFISEM 757 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670 D++ R G++LG +QSG+P F +A + +L +AR+ A+ I+ D Sbjct: 758 DMRFRGPGQVLGTRQSGVPDFTLASLVEDEEVLLLARQAAEKIIEMD 804 >gi|294102390|ref|YP_003554248.1| ATP-dependent DNA helicase RecG [Aminobacterium colombiense DSM 12261] gi|293617370|gb|ADE57524.1| ATP-dependent DNA helicase RecG [Aminobacterium colombiense DSM 12261] Length = 695 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 229/649 (35%), Positives = 367/649 (56%), Gaps = 20/649 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKI---LLNDGTG 99 DL+ + P + DR ++++ E V++ + Q R+ + I L+ DG Sbjct: 35 DLILFFPRRYEDRRGLTSLAKLRPETTVSLLVRVVAVEKRQ-TSRKGFVIIQGLMTDGQD 93 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIE 157 + ++F RK L+ + G+++ + G I + + +P + I + + Sbjct: 94 FLRAVWFNRKG--LERLLTPGKEVALYGPIDWKYGHLQITNPEFEIIEEGESPESIGQVV 151 Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 +Y L GL F+K+I L P + + + L K +FP + ++ +H P+ + Sbjct: 152 PIYPLTAGLHQRWFRKLIRFCLDNSPFIFDPLPDFLRLKHAFPPLYDSILEMHYPQGRES 211 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKK--EIGIPINVEGKIAQKILRNI-PFSPT 274 ++ AR+RLAY EL Q + L R + + E + G++ ++ L+ I P+ T Sbjct: 212 WK---KARDRLAYQELFVLQTGMALRRGERSRLAEKAPILPESGRLKERFLKEIFPYPLT 268 Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334 ++Q+ +I QDM+ M R+LQGDVGSGKT VA++A+ AVE G Q MAP ILA Sbjct: 269 EAQKKVSLEISQDMALNIPMHRLLQGDVGSGKTAVAVLALLQAVEGGYQGAFMAPTEILA 328 Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394 QQHY + + + + V ++ G++ R L++I+ G+AH+++GTHALF D + + Sbjct: 329 QQHYYRLHSFLEPLGVSVVLLIGSLKNRARELTLQKISTGEAHVVVGTHALFSDPVTFSN 388 Query: 395 LILVIVDEQHRFGVQQ----RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 L ++DEQHRFGV Q R K + APH+L+MTATPIPRTL L+ GD+ +S I E Sbjct: 389 LGFAVIDEQHRFGVLQKNALRAKGANEGQAPHILVMTATPIPRTLTLSVYGDLSVSVIDE 448 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P GR PI+T + + ++ S ++ YW+CP I+E + + SV ER+ L Sbjct: 449 MPPGRTPIQTRWLKKKEEGRLWAFIRERCSARERIYWVCPLIDESETLSVASVTERYEYL 508 Query: 511 HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 + F ++ ++HG++ +KE++M SF G L+++TTVIEVG+DV A++++IE+A+ Sbjct: 509 KKLFPDLNVGLLHGQLPSSEKETIMRSFARGHLDLIVSTTVIEVGVDVPQATVMVIEDAD 568 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629 FGL+QLHQLRGRVGRG S C+LL + P ++ RL V+ T DGF IAE DL+ R Sbjct: 569 RFGLSQLHQLRGRVGRGGNQSYCVLLSN-PTTREGVERLKVMCATTDGFKIAEADLRLRG 627 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 GE+ G++Q G+ F +A SLL++ARKDA ++ DP L+ +G Sbjct: 628 PGEVCGVRQHGITDFRVADLLKDRSLLDMARKDAFSLVECDPRLSEEQG 676 >gi|182684639|ref|YP_001836386.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae CGSP14] gi|303254307|ref|ZP_07340415.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS455] gi|303258630|ref|ZP_07344610.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP-BS293] gi|303261793|ref|ZP_07347739.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP14-BS292] gi|303263657|ref|ZP_07349579.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS397] gi|303266833|ref|ZP_07352712.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS457] gi|303269890|ref|ZP_07355632.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS458] gi|182629973|gb|ACB90921.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae CGSP14] gi|301802397|emb|CBW35151.1| ATP-dependent DNA helicase [Streptococcus pneumoniae INV200] gi|302598658|gb|EFL65696.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS455] gi|302636876|gb|EFL67365.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP14-BS292] gi|302640131|gb|EFL70586.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP-BS293] gi|302640568|gb|EFL70973.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS458] gi|302643601|gb|EFL73869.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS457] gi|302646695|gb|EFL76920.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS397] Length = 671 Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust. Identities = 243/674 (36%), Positives = 385/674 (57%), Gaps = 30/674 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL K +A +H P KD A R+ ++EL Q+ L +++ + Sbjct: 169 ENLPQSLLDKYKLMFRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQMLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ +N + + ++PF+ T++QE ++++IL DM + M R+LQGDVGSG Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QA +M P ILA+QH+E ++ N ++ ++TG++ A +R Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T I ++ +V+ L+ + +G +A Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + +A++HGRM +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + + Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKDRMRIMTETTNGFILAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642 Query: 664 KHILT-----QDPD 672 +I + +DP+ Sbjct: 643 SYISSIEAWQEDPE 656 >gi|306824746|ref|ZP_07458090.1| DNA helicase RecG [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432957|gb|EFM35929.1| DNA helicase RecG [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 671 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 243/674 (36%), Positives = 385/674 (57%), Gaps = 30/674 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-RVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL K S +A +H P KD A R+ ++EL Q+ L ++ + Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ +N + ++ N+PF+ T++QE ++++IL DM + M R+LQGDVGSG Sbjct: 226 NRVQGSGLVLNWSQEKVTEVKENLPFALTQAQEKSLQEILIDMKSDHHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QA +M P ILA+QH+E ++ + ++ ++TG++ A +R Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPDLKLA--LLTGSLKVAEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LE IA G+A IIGTHAL QD + Y +L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 EVLETIAKGEADFIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T I ++ +V+ L+ + +G +A Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + +A++HG+M +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQEFKERKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P +++ Sbjct: 524 ILVSTTVIEVGVNVSNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TES 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642 Query: 664 KHILT-----QDPD 672 +I + +DP+ Sbjct: 643 SYISSIEGWKEDPE 656 >gi|15901531|ref|NP_346135.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae TIGR4] gi|111657513|ref|ZP_01408256.1| hypothetical protein SpneT_02001279 [Streptococcus pneumoniae TIGR4] gi|225857310|ref|YP_002738821.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae P1031] gi|18279285|sp|Q54900|RECG_STRPN RecName: Full=ATP-dependent DNA helicase recG gi|14973191|gb|AAK75775.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae TIGR4] gi|225725262|gb|ACO21114.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae P1031] Length = 671 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 241/674 (35%), Positives = 387/674 (57%), Gaps = 30/674 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL K S +A +H P+ +++ A R+ ++EL Q+ L +++ + Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFPKYLAEYK---QALRRIKFEELFYFQMQLQMLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ +N + + ++PF+ T++QE ++++IL DM + M R+LQGDVGSG Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QA +M P ILA+QH+E ++ N ++ ++TG++ A +R Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T I ++ +V+ L+ + +G + Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQV 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + +A++HGRM +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + + Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642 Query: 664 KHILT-----QDPD 672 +I + +DP+ Sbjct: 643 SYISSIEAWQEDPE 656 >gi|320547460|ref|ZP_08041746.1| DNA helicase RecG [Streptococcus equinus ATCC 9812] gi|320447805|gb|EFW88562.1| DNA helicase RecG [Streptococcus equinus ATCC 9812] Length = 671 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 245/635 (38%), Positives = 368/635 (57%), Gaps = 25/635 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGE 100 DLL Y+P + D + + + E+ V ITG + ++ Q KR + G Sbjct: 31 DLLLYYPFRYEDFKSKSALDLVDGEKAV-ITGTVVTPANVQYYGYKRNRLSFKIRQGEAV 89 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160 IT+ FF + L + G + + GK LK+ + + I +D P VY Sbjct: 90 ITVSFFNQP--YLSDKVELGSDVAIFGKWDALKSAVTGMK---ILAQVEDDMQP----VY 140 Query: 161 SLPTGLSVDLFKKIIVEA--LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 + G+S K I A + LPE + + LL+K S A+A +H P KD Sbjct: 141 RVAQGISQVALVKAIKSAFEIGAQNWLPENLPQVLLEKYRLLSRAKATAAMHFP---KDL 197 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINV-EGKIAQKILRNIPFSPTKS 276 A R+ ++EL Q+ L ++ K E G+ I E K+A+KI +PF T Sbjct: 198 AEYKQALRRIKFEELFYFQMNLQALKADNKSEANGLAIAFDEKKMAEKIAA-LPFVLTGG 256 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q+ ++ DIL DM M R+LQGDVGSGKT+VA +AM AA AG Q+ +M P ILA+Q Sbjct: 257 QKRSLSDILSDMRSGGHMNRLLQGDVGSGKTVVASLAMYAAYTAGFQSALMVPTEILAEQ 316 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 H+E + + + I I+T M A ++ AL IA G +I+GTHAL QD++ Y++L Sbjct: 317 HFESLTQLFPDLSI--AILTSGMKSAAKKAALTAIADGSVDMIVGTHALIQDAVSYHRLG 374 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 LVI DEQHRFGV QR +K P VL+MTATPIPRTL +T+ G++D+S I E PAGRK Sbjct: 375 LVITDEQHRFGVNQRRIFREKGENPDVLMMTATPIPRTLAITAFGEMDVSIIDELPAGRK 434 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-- 514 PI T + +++ V++ +K L +G +AY I P IEE + + ++ + L +F Sbjct: 435 PIITRWVKHEQLEVVLDWVKKELQKGAQAYVISPLIEESESLDLKNAIALHEELSAYFDR 494 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 T+ ++++HGRM + +KE++M FK ++L++TTVIEVG++V +A+I+II +A+ FGL+ Sbjct: 495 TAEVSLMHGRMKNDEKEAIMQDFKAQKSQVLVSTTVIEVGVNVPNATIMIIMDADRFGLS 554 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG++ S IL+ +P ++ R+ ++ T DGF++AE DLK R GEI Sbjct: 555 QLHQLRGRVGRGQKQSYAILVANPK-TQTGKERMKIMTETTDGFVLAEADLKMRGSGEIF 613 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669 G +QSG+P+F +A ++LE AR+ A I+++ Sbjct: 614 GTRQSGIPEFQVADIVEDYNILEEARRVASQIVSE 648 >gi|325127600|gb|EGC50520.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis N1568] Length = 680 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 228/600 (38%), Positives = 340/600 (56%), Gaps = 7/600 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H + R+ + + DG+G + L F + G++I G+IK M Sbjct: 65 HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP + L VY GL+ ++II AL P L + + LL + Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182 Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 P +AE+ ++H+P + + T PA +RL +DELLA Q+++ L R++ Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAA 242 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + +G + Q + + +PF+ T +QE + +I +DM+Q M R+LQGDVGSGKT+VA + Sbjct: 243 LGGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALFA 302 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A+E+G Q +MAP ILA+QH+ K++ + I V + G++ + + +A ++A G Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 I +GTHALF D + ++ L L IVDEQHRFGV QRL L K H L+M+ATPIPRT Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I E P GR PIKT ++ R EV + +G++AYW+CP IEE Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEE 482 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ E L +I ++HGRM +K VM F +G +L+ATTVIEV Sbjct: 483 SETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEV 542 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +A++++IE+AE GLAQLHQLRGRVGRG S C+LL+ PL + + RL V+ Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA +DL R GE LG +QSG+P A+ E LLE AR+ A ++ Q+P++ Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPLLIEQNPEI 662 >gi|288906074|ref|YP_003431296.1| ATP-dependent DNA helicase RecG [Streptococcus gallolyticus UCN34] gi|306832113|ref|ZP_07465267.1| DNA helicase RecG [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|288732800|emb|CBI14376.1| ATP-dependent DNA helicase RecG [Streptococcus gallolyticus UCN34] gi|304425552|gb|EFM28670.1| DNA helicase RecG [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 671 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 244/635 (38%), Positives = 365/635 (57%), Gaps = 25/635 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGE 100 DLL Y+P + D + ++SE+++ ITG + ++ Q KR + G Sbjct: 31 DLLLYYPFRYEDFKSK-RVSELADGEKAVITGTVVTPANVQYYGYKRNRLSFKIKQGEAV 89 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160 I + FF + L + G I + GK LK+ + + I +D P VY Sbjct: 90 IAISFFNQP--YLADKVELGSDIAIFGKWDALKSAVTGMK---ILAQVEDDMQP----VY 140 Query: 161 SLPTGLSVDLFKKIIVEA--LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 + G+S + K I A + LPE + + LL K A+A +H P KD Sbjct: 141 RVAQGISQNALVKAIKSAFEIGAQNWLPENLPQVLLDKYRLLGRAQATAAMHFP---KDL 197 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINV-EGKIAQKILRNIPFSPTKS 276 A R+ ++EL Q+ L ++ K E G+ I E K+A KI +PF+ T Sbjct: 198 AEYKQALRRIKFEELFYFQMNLQALKADNKSEANGLAIAYDEQKVADKIAA-LPFTLTGG 256 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q ++ DIL DM M R+LQGDVGSGKT+VA +AM A AG Q+ +M P ILA+Q Sbjct: 257 QRRSLDDILADMRSGGHMNRLLQGDVGSGKTVVASLAMYATYTAGFQSALMVPTEILAEQ 316 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 H+E + + + + I+T M A ++ AL IA G +I+GTHAL QD++ Y++L Sbjct: 317 HFESLTQLF--PALSIAILTSGMKTAAKQAALSAIADGSVDMIVGTHALIQDAVTYHRLG 374 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 LVI DEQHRFGV QR +K P VL+MTATPIPRTL +T+ G++D+S I E PAGRK Sbjct: 375 LVITDEQHRFGVNQRRVFREKGENPDVLMMTATPIPRTLAITAFGEMDVSIIDELPAGRK 434 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 PI T + +++ V++ +K L +G +AY I P IEE + + ++ V L +F Sbjct: 435 PIITRWVKHEQLEVVLDWVKKELQKGAQAYVISPLIEESESLDLKNAVALHEELSAYFAD 494 Query: 517 S--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 S +A++HGRM + +KE++M FK ++L++TTVIEVG++V +A+I+II +A+ FGL+ Sbjct: 495 SATVALMHGRMKNDEKEAIMQDFKAQKSQVLVSTTVIEVGVNVPNATIMIIMDADRFGLS 554 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG++ S IL+ +P ++ R+ ++ T DGF++AE DLK R GEI Sbjct: 555 QLHQLRGRVGRGDKQSYAILVANPK-TQTGKERMKIMTETTDGFVLAEADLKMRGSGEIF 613 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669 G +QSG+P+F +A ++LE AR+ A I+++ Sbjct: 614 GTRQSGIPEFQVADIVEDYNILEEARRVASQIVSE 648 >gi|325206697|gb|ADZ02150.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis M04-240196] Length = 680 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 228/600 (38%), Positives = 340/600 (56%), Gaps = 7/600 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H + R+ + + DG+G + L F + G++I G+IK M Sbjct: 65 HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP + L VY GL+ ++II AL P L + + LL + Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182 Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 P +AE+ ++H P + + T PA +RL +DELLA Q+++ L R++ Sbjct: 183 LPHLAESLRLLHLPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAA 242 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + +G + Q + + +PF+ T +QE + +I +DM+Q M R+LQGDVGSGKT+VA ++ Sbjct: 243 LGGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSA 302 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A+E+G Q +MAP ILA+QH+ K++ + I V + G++ + + +A ++A G Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 I +GTHALF D + ++ L L IVDEQHRFGV QRL L K H L+M+ATPIPRT Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I E P GR PIKT ++ R EV + +G++AYW+CP IEE Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEE 482 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ E L +I ++HGRM +K VM F +G +L+ATTVIEV Sbjct: 483 SETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEV 542 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +A++++IE+AE GLAQLHQLRGRVGRG S C+LL+ PL + + RL V+ Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA +DL R GE LG +QSG+P A+ E LLE AR+ A ++ Q+P++ Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 662 >gi|315607375|ref|ZP_07882374.1| DNA helicase RecG [Prevotella buccae ATCC 33574] gi|315250932|gb|EFU30922.1| DNA helicase RecG [Prevotella buccae ATCC 33574] Length = 690 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 245/669 (36%), Positives = 378/669 (56%), Gaps = 26/669 (3%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + LS+ + + DL Y+P ++DR I E++ + V + G I Sbjct: 5 GVGPRRKEILSRELGINT-----YGDLSEYYPYKYVDRSRLYTIDELTADMPFVQLKGRI 59 Query: 77 SQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 F + R+ + +DG G + L++F T+ + + + G V GK R Sbjct: 60 LSFDEFVMGPRKKRIVAHFSDGHGVVDLVWF-NGTKYVYDSYKTGTDYIVFGKPGIFGGR 118 Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLP--------TGLSVDLFKKIIVEALSRLPVLPE 187 VHP + ++ ++ YS T S++ K ++E LS P LPE Sbjct: 119 YQFVHPDIDDASKLQLSEMGMQPYYSTTEKMKKANFTSRSIEKITKTLIEKLS--PQLPE 176 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247 + +L + S +A IH P+ A + + AR RL ++EL Q+ +L Sbjct: 177 TLPDFILNRLHLVSRPQALRWIHYPKNADEMQ---RARLRLKFEELFYVQLNILRYASDN 233 Query: 248 KKEI-GIPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 +++ G N G I R N+PF T +Q+ + +I DM +M R+LQGDVGSG Sbjct: 234 RRKYRGYVFNRVGDIFNGFYRHNLPFPLTGAQKRVMHEIRADMGSGRQMNRLLQGDVGSG 293 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KTLVAL++M A++ G QA IMAP ILA+QH IK + + I VE++TG + R+ Sbjct: 294 KTLVALMSMLIALDNGFQACIMAPTEILAEQHLHTIKDFLKGMDIRVELLTGIVKGKKRK 353 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVL 424 + L + G HI +GTHAL +D++Q+ +L L +VDEQHRFGV QR KL K PHVL Sbjct: 354 EVLAGLLDGSIHIAVGTHALIEDTVQFRQLGLAVVDEQHRFGVAQRAKLWAKNENPPHVL 413 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 +MTATPIPRTL +T GD+D+S I E P GRKPI+T+ N+ + + ++ ++EG++ Sbjct: 414 VMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTIHKYDNQTTSLYQGIRQQIAEGRQ 473 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y + P I+E ++ + +++ E + +L + F ++ +HGRM +KE M F G + Sbjct: 474 VYIVFPLIKESEKMDLKNLEEGYEALKDVFPGYRMSKVHGRMKAAEKEEEMQKFVKGETQ 533 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+ + LS Sbjct: 534 ILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQSYCILVTNYQLSAE 593 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKD 662 + R+ ++ +T DGF IAE DLK R G++ G +QSG+ L IA ++++AR + Sbjct: 594 TRKRIDIMCDTNDGFRIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQIIQLARDE 653 Query: 663 AKHILTQDP 671 A+ I+ DP Sbjct: 654 AQKIIEDDP 662 >gi|306834226|ref|ZP_07467346.1| DNA helicase RecG [Streptococcus bovis ATCC 700338] gi|304423799|gb|EFM26945.1| DNA helicase RecG [Streptococcus bovis ATCC 700338] Length = 671 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 246/636 (38%), Positives = 366/636 (57%), Gaps = 27/636 (4%) Query: 43 DLLFYHPSSFIDRHYRPK-ISEISEERIVTITGYISQHSSFQLQ--KRRPYKILLNDGTG 99 DLL Y+P + D ++ K +SE+++ ITG + ++ Q KR + G Sbjct: 31 DLLLYYPFRYED--FKSKSVSELADGEKAVITGTVVTPANVQYYGYKRNRLSFKIKQGEA 88 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159 I + FF + L + G I + GK LK+ + + I +D P V Sbjct: 89 VIAISFFNQP--YLADKVEIGSDIAIFGKWDALKSAVTGMK---ILAQVEDDMQP----V 139 Query: 160 YSLPTGLSVDLFKKIIVEA--LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 Y + G+S + K I A + LPE + + LL K A+A +H P KD Sbjct: 140 YRVAQGISQNALVKAIKSAFEIGAQNWLPENLPQVLLDKYRLLGRAQATAAMHFP---KD 196 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINV-EGKIAQKILRNIPFSPTK 275 A R+ ++EL Q+ L ++ K E G+ I E K+A KI +PF+ T Sbjct: 197 LAEYKQALRRIKFEELFYFQMNLQALKADNKSEANGLAIAYDEQKVADKIAA-LPFTLTG 255 Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 Q ++ DIL DM M R+LQGDVGSGKT+VA +AM A AG Q+ +M P ILA+ Sbjct: 256 GQRRSLDDILADMRSGGHMNRLLQGDVGSGKTVVASLAMYATYTAGFQSALMVPTEILAE 315 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 QH+E + + + I I+T M A ++ AL IA G +I+GTHAL QD++ Y++L Sbjct: 316 QHFESLTQLFPDLSI--AILTSGMKTAAKQAALSAIADGSVDMIVGTHALIQDAVTYHRL 373 Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 LVI DEQHRFGV QR +K P VL+MTATPIPRTL +T+ G++D+S I E PAGR Sbjct: 374 GLVITDEQHRFGVNQRRVFREKGENPDVLMMTATPIPRTLAITAFGEMDVSIIDELPAGR 433 Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 KPI T + +++ V++ +K L +G +AY I P IEE + + ++ V L +F Sbjct: 434 KPIITRWVKHEQLEVVLDWVKEELQKGAQAYVISPLIEESESLDLKNAVALHEELSAYFA 493 Query: 516 SS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 S +A++HGRM + +KE++M FK ++L++TTVIEVG++V +A+I+II +A+ FGL Sbjct: 494 DSATVALMHGRMKNDEKEAIMQDFKAQKSQVLVSTTVIEVGVNVPNATIMIIMDADRFGL 553 Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633 +QLHQLRGRVGRG++ S IL+ +P ++ R+ ++ T DGF++AE DLK R GEI Sbjct: 554 SQLHQLRGRVGRGDKQSYAILVANPK-TQTGKERMKIMTETTDGFVLAEADLKMRGSGEI 612 Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669 G +QSG+P+F +A ++LE AR+ A I+++ Sbjct: 613 FGTRQSGIPEFQVADIVEDYNILEEARRVASQIVSK 648 >gi|148997750|ref|ZP_01825314.1| N-acetylmannosamine-6-phosphate 2-epimerase [Streptococcus pneumoniae SP11-BS70] gi|148999065|ref|ZP_01826496.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP11-BS70] gi|168575113|ref|ZP_02721076.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae MLV-016] gi|307068324|ref|YP_003877290.1| RecG-like helicase [Streptococcus pneumoniae AP200] gi|147755104|gb|EDK62160.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP11-BS70] gi|147756249|gb|EDK63291.1| N-acetylmannosamine-6-phosphate 2-epimerase [Streptococcus pneumoniae SP11-BS70] gi|183578801|gb|EDT99329.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae MLV-016] gi|306409861|gb|ADM85288.1| RecG-like helicase [Streptococcus pneumoniae AP200] Length = 671 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 243/674 (36%), Positives = 385/674 (57%), Gaps = 30/674 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKASL---NGMKVLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL K S +A +H P KD A R+ ++EL Q+ L +++ + Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQMLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ +N + + ++PF+ T++QE ++++IL DM + M R+LQGDVGSG Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QA +M P ILA+QH+E ++ N ++ ++TG++ A +R Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T I ++ +V+ L+ + +G + Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQV 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + +A++HGRM +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERETD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + + Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKDRMRIMIETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642 Query: 664 KHILT-----QDPD 672 +I + +DP+ Sbjct: 643 SYISSIEVWQEDPE 656 >gi|304388291|ref|ZP_07370407.1| DNA helicase RecG [Neisseria meningitidis ATCC 13091] gi|304337722|gb|EFM03875.1| DNA helicase RecG [Neisseria meningitidis ATCC 13091] Length = 680 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 227/600 (37%), Positives = 342/600 (57%), Gaps = 7/600 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H + R+ + + DG+G + L F + G++I G+IK M Sbjct: 65 HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP + L VY GL+ ++II AL P L + + LL + Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182 Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 P +AE+ ++H+P + + T PA +RL +DELLA Q+++ L R++ Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAA 242 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + +G + Q + + +PF+ T +QE + +I +DM+Q M R+LQGDVGSGKT+VA ++ Sbjct: 243 LGGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSA 302 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A+E+G Q +MAP ILA+QH+ K++ + I V + G++ + + +A ++A G Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 I +GTHALF D + ++ L L IVDEQHRFGV QRL L K H L+M+ATPIPRT Sbjct: 363 TVKIAVGTHALFSDGVAFHNLGLSIVDEQHRFGVAQRLALKNKGRDVHQLMMSATPIPRT 422 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I + P GR PIKT ++ R EV + + +G++AYW+CP IEE Sbjct: 423 LAMSFFADLDVSIIDQLPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIEE 482 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ E L +I ++HGRM +K VM F +G +L+ATTVIEV Sbjct: 483 SETLQLQTATETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEV 542 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +A++++IE+AE GLAQLHQLRGRVGRG S C+LL+ PL + + RL V+ Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA +DL R GE LG +QSG+P A+ E LLE AR+ A ++ Q+P++ Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 662 >gi|325204743|gb|ADZ00197.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis M01-240355] Length = 680 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 228/600 (38%), Positives = 341/600 (56%), Gaps = 7/600 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H + R+ + + DG+G + L F + G++I G+IK M Sbjct: 65 HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP + L VY GL+ ++II AL P L + + LL + Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182 Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 P +AE+ ++H+P + + T PA +RL +DELLA Q+++ L R++ Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAA 242 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + +G + Q + + +PF+ T +QE + +I +DM+Q M R+LQGDVGSGKT+VA ++ Sbjct: 243 LGGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSA 302 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A+E+G Q +MAP ILA+QH+ K++ + I V + G++ + + +A ++A G Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 I +GTHALF D + ++ L L IVDEQHRFGV QRL L K H L+M+ATPIPRT Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I E P GR PIKT ++ R EV + +G++AYW+CP IEE Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNTCRKGRQAYWVCPLIEE 482 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ E L +I ++HGRM +K VM F +G +L+ATTVIEV Sbjct: 483 SETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEV 542 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +A++++IE+AE GLAQLHQLRGRVGRG S C+LL+ PL + + RL V+ Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA +DL R GE LG +QSG+P A+ E LLE AR+ A ++ Q+P++ Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQAREIAPILIEQNPEI 662 >gi|225848441|ref|YP_002728604.1| ATP-dependent DNA helicase RecG [Sulfurihydrogenibium azorense Az-Fu1] gi|225644626|gb|ACN99676.1| ATP-dependent DNA helicase RecG [Sulfurihydrogenibium azorense Az-Fu1] Length = 801 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 226/662 (34%), Positives = 376/662 (56%), Gaps = 36/662 (5%) Query: 45 LFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLL 104 L+ P + DR + KI ++ + T + K + IL D + L Sbjct: 127 LYNFPEKYEDRRVK-KILKVKDGETGTFYAQVEDIKKVNRGKLKVEVILRQDNVL-FSAL 184 Query: 105 FFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL-- 162 FFY K L F +GR + + GK+ K ++ P + ++ I VYSL Sbjct: 185 FFYDKP-YLYTYFRKGRTVKLFGKVSVYKKNYSLIQPDLLEEKEDPID--TIAPVYSLRG 241 Query: 163 -----PTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 TG +++ ++ + + + + + ++I +L+K +FP +++A IH+P + D Sbjct: 242 DSSIKTTGQTINHLRRGMFKIVEKFSDVKDYIPNFILEKYNFPPLSKALKFIHHPDENTD 301 Query: 218 FE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 + + + ++RL +DEL Q+A + ++ I V+ Q++ +N+PF Sbjct: 302 IDELNNFQNIHQKRLIFDELFLLQLAQKYRKALLQRNPSYNIKVKEDFLQEVEKNLPFQL 361 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T +Q+ IK+IL D+ ++ M R++ GDVGSGKT+VA I+ A Q+ +MAP IL Sbjct: 362 TNAQKRTIKEILSDLEKEVPMNRMVLGDVGSGKTVVAAISSLAVALNNYQSAVMAPTEIL 421 Query: 334 AQQHYE----FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 AQQHY F+K Y ++ +I ++TG++ ++K + + G ++IGTHAL ++ Sbjct: 422 AQQHYNNFKNFLKPYLKDYEIA--LLTGSLSSTEKKKIYKAVESGIVKVVIGTHALLEEK 479 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 +++ L LV+VDEQHRFGV+QR L +++ PHV++MTATPIPRTL L GD+DISK+ Sbjct: 480 LKFKDLALVVVDEQHRFGVEQRKSLIERSEKKPHVMVMTATPIPRTLALAYYGDLDISKL 539 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 E P GRKP+KTVI+ D++ +K L +G++ + + P I+E ++++ +S E F Sbjct: 540 DELPKGRKPVKTVILFEKERDKLYSVIKQELEKGRQVFVVYPLIQESEKTDLKSAEEGFK 599 Query: 509 SLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 E F + ++HG+M +K+ +M FK G +L++TTVIEVG+D+ +A++++IE Sbjct: 600 HYQEAFPDYKVVLLHGKMKQEEKDRIMQEFKEGKAHILVSTTVIEVGVDIPNATVMVIEE 659 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK------------NSYTRLSVLKNTE 615 A FGL+Q+HQLRGR+GRG+ C L+ LS+ + RL +L T Sbjct: 660 AHRFGLSQIHQLRGRIGRGQYEGYCFLMAPDELSQPQSDSSKEKSRLKALERLKILVKTN 719 Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 +GF IAE+DL+ R G+I G++QSG F++A + + LLEIA K+A+ ++ QDP L+ Sbjct: 720 NGFEIAEKDLELRGAGDIAGVRQSGESGFILADLKRDEELLEIATKEAQEMINQDPTLSK 779 Query: 676 VR 677 + Sbjct: 780 YK 781 >gi|223933446|ref|ZP_03625431.1| ATP-dependent DNA helicase RecG [Streptococcus suis 89/1591] gi|330832178|ref|YP_004401003.1| ATP-dependent DNA helicase [Streptococcus suis ST3] gi|223897884|gb|EEF64260.1| ATP-dependent DNA helicase RecG [Streptococcus suis 89/1591] gi|329306401|gb|AEB80817.1| ATP-dependent DNA helicase [Streptococcus suis ST3] Length = 672 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 242/676 (35%), Positives = 381/676 (56%), Gaps = 30/676 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L LS G+G K + KI N N N DLL Y+P + D + I ++ + Sbjct: 4 LCDELSVLPGIGPKSAEKFLKI-NIQNIN-----DLLTYYPFRYEDFESK-SIYDLQDGE 56 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 + G + ++ Q + ++ + GE+ L + L + G+ I V GK Sbjct: 57 KAVVVGEVVSPANVQYYGYKRNRLRFSMKQGEVVLAVSFFNQPYLADKIVLGQDIAVWGK 116 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186 K K + + I D ++ VY + G+S K I A+ + L +L Sbjct: 117 WDKAKASLTGMK---ILAQVSDE----LQPVYHVAQGISQVNLVKAIKTAIDQGYLHLLE 169 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + L ++ + EA +H P +++ A R+ ++EL Q+ L +++ Sbjct: 170 ENLPSVLRERYRLMNRREAVFAMHFPTNLEEYR---QALRRMKFEELFYFQLQLQMLKAN 226 Query: 247 FKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + G+ I + +R +PF T +Q A+ +IL DM M R+LQGDVGSG Sbjct: 227 NRDISNGLKIAYDADRLAMQIRQLPFVLTDAQSGALAEILSDMKSYGHMNRLLQGDVGSG 286 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QA IM P ILA+QH+E +++ ++ + ++TG M A RR Sbjct: 287 KTVVAGLAMFAAVTAGMQAAIMVPTEILAEQHFESLRQLF--PELSIALLTGGMKAAERR 344 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 ALE I+ GQ II+GTHAL Q+S+ Y+KL LV+ DEQHRFGV+QR +K P VL+ Sbjct: 345 TALEAISSGQVDIIVGTHALIQESVTYHKLGLVVTDEQHRFGVKQRRLFREKGDNPDVLM 404 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T + ++ V++ L+ L G + Sbjct: 405 MTATPIPRTLAITAFGDMDVSIINQLPAGRKPIITRWVKHQQLPTVLDWLERELEVGAQV 464 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCK 543 Y+I P IEE + + ++ V+ + L HF + + +HG+M + +K+++M +FK Sbjct: 465 YFISPLIEESEALDLKNAVDLQSDLQAHFGEQVTVDLLHGKMKNDEKDAIMQAFKERKTN 524 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S +L+ +P +++ Sbjct: 525 ILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGHKQSYAVLVANPK-TES 583 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T DGF++AE DLK R GEI G +QSG+P+F +A +LE AR+ A Sbjct: 584 GKERMKIMTETTDGFILAEADLKMRGSGEIFGTRQSGLPEFQVANIIEDYPILEEARRVA 643 Query: 664 KHILT-----QDPDLT 674 I++ +DP+ + Sbjct: 644 SQIVSVENWQEDPNWS 659 >gi|150025089|ref|YP_001295915.1| ATP-dependent DNA helicase RecG [Flavobacterium psychrophilum JIP02/86] gi|149771630|emb|CAL43104.1| ATP-dependent DNA helicase RecG [Flavobacterium psychrophilum JIP02/86] Length = 701 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 260/705 (36%), Positives = 395/705 (56%), Gaps = 49/705 (6%) Query: 6 LNPLF-APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64 +N LF P+ +GVG + L K + ++ DL+ ++P+ ++DR KISE+ Sbjct: 1 MNNLFETPIEYLKGVGPQRGDLLRKELGV-----YKYGDLINFYPNRYLDRTKYYKISEL 55 Query: 65 SEERI-VTITGYISQHSSFQLQKRRPYKI-LLNDGTGEITLLFF----YRKTEMLKNVFF 118 V I G + S + K + + D TG++ L++F + K + NV + Sbjct: 56 QNSSAEVQIIGKVIHIKSVEFAKGKSRLVATFIDDTGQMELVWFQGQKWVKESLKLNVVY 115 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNF---PLIEAVYSLPT-GLSVDLFK 172 + GK N M HP + + Q + P+ + L G+S + Sbjct: 116 -----VIFGKTTSFNNTFNMAHPEMELLSEHEQSIRLAMQPVYPSTEKLTNRGISNKVVN 170 Query: 173 KIIVEALSRLPVL-PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231 K++ + S L E + L+++ S EA IH P+ A E + A+ RL ++ Sbjct: 171 KMMQQLFSETHTLFSETLPIYLIEELKLISKKEALINIHFPKNA---EALAKAQFRLKFE 227 Query: 232 ELLAGQIALL---LMRKQFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQD 287 EL Q+ L+ L+RK K G P + G + N +PF+ T +Q+ +K+I D Sbjct: 228 ELFFIQLQLITKNLIRKHKIK--GFPFDKVGNYFTEFFNNHLPFNLTNAQKRVLKEIRND 285 Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347 M +M R+LQGDVGSGKT+VA ++M A++ G QA +MAP ILA QH+ + + ++ Sbjct: 286 MGNPAQMNRLLQGDVGSGKTIVAFMSMLLALDNGFQACLMAPTEILANQHFIGLLELSKP 345 Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407 I ++I+TG+ R+ E + +G HI+IGTHAL +D +Q+ L L I+DEQHRFG Sbjct: 346 LNINIKILTGSSNTKARKIIHEELENGSLHILIGTHALLEDKVQFKNLGLAIIDEQHRFG 405 Query: 408 VQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466 V+QR KL +K T PHVL+MTATPIPRTL ++ GD+DIS I E P GRKPIKTV + Sbjct: 406 VEQRSKLWKKNTIPPHVLVMTATPIPRTLAMSLYGDLDISVIDELPPGRKPIKTV----H 461 Query: 467 RIDEVIERLKVV------LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSS 517 R D RLKV + +G++ Y + P I+E ++ +F+ +++ + SL F + Sbjct: 462 RFDS--NRLKVWHFIREEIEKGRQIYIVYPLIQESEKMDFKDLMDGYESLSRDFPLPKYA 519 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 I+I+HG+M DKE+ M F +G +++ATTVIEVG++V +AS++IIE+AE FGL+QLH Sbjct: 520 ISILHGKMKPADKEAEMKRFSDGKTNIMVATTVIEVGVNVPNASVMIIESAERFGLSQLH 579 Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637 QLRGRVGRG + S CIL+ + ++S TR+ + T DGF IAE DLK R G+I+G + Sbjct: 580 QLRGRVGRGADQSYCILMTSHKIGEDSKTRMETMVATNDGFEIAEVDLKLRGPGDIMGKQ 639 Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682 QSG+ IA +L +AR A +L D + Q++R Sbjct: 640 QSGVLNLQIADLVRDKDILLLARNYALKLLKDDAPMEKPEHQTLR 684 >gi|291550315|emb|CBL26577.1| ATP-dependent DNA helicase RecG [Ruminococcus torques L2-14] Length = 686 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 237/672 (35%), Positives = 375/672 (55%), Gaps = 24/672 (3%) Query: 11 APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70 A + T +GVG+K KI DL+ Y+P + ISE+ E ++ Sbjct: 5 AGVGTIKGVGEKTEKLFEKI------GVYTVDDLIHYYPRGYEIFGEPVPISEVEEGKVC 58 Query: 71 TITGYISQHSSFQLQK-RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 TI G + K R+ L D TG I +++F + L+N + + G++ Sbjct: 59 TICGSVFGRVQVSPGKGRQITTAYLKDLTGTIKVIWF--RMPFLRNTLGRKGAVVLRGRV 116 Query: 130 KKLKNRIIMVHPHYI---FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186 K ++ ++M HP + +N ++ VY L GL+ + K + +AL ++ Sbjct: 117 VKKRDSLVMEHPEIYDPAVRYQEKIN--TMQPVYGLTAGLTNNAVIKALRQALEQVREQD 174 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK- 245 +++ + +K F ++ +H P + F AR+R ++E L ++L ++ Sbjct: 175 DFLPDEFTKKYHFRPYEQSVREMHFPENKEAF---LAARQRFVFEEFLVFILSLRQIKNT 231 Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 Q + + G + +I++ LR +P+ T +Q D+ +DM + M R++QGDVGSG Sbjct: 232 QDRMKNGFHFEDQPQISE-FLRQLPYELTAAQLRVWDDMQKDMKSQYVMSRLVQGDVGSG 290 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV--EIITGNMPQAH 363 KT+VA++ + A G Q +MAP +LA+QH+E IK + QI + E++TG+M Sbjct: 291 KTIVAVLGLLFAGLNGYQGALMAPTEVLARQHFENIKDMLEQYQIPLRAELLTGSMKAKE 350 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 +R+A RI G++ IIIGTHAL Q+ Y+ L LV+ DEQHRFGV+QR L K PH+ Sbjct: 351 KREAYARIESGESSIIIGTHALIQEKAIYHNLALVVTDEQHRFGVKQREMLAGKGNLPHI 410 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+M+ATPIPRTL + GD+DIS I E P R PIK ++ + E ++ +++G+ Sbjct: 411 LVMSATPIPRTLGIILYGDLDISVIDELPKNRLPIKNCVVDTGYRPKAYEFIRKQVAQGR 470 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGT 541 + Y ICP +EE + +V++ L E SI + +HG+M + +K+ VM++F Sbjct: 471 QCYVICPMVEESEAMEAENVIDYCEMLSETLGDSINVSFLHGKMKEKEKDEVMNAFGRNE 530 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTV+EVGIDV +A++I+IENAE FGLAQLHQLRGRVGRG+ S CI + S Sbjct: 531 IQVLVSTTVVEVGIDVPNATVIMIENAERFGLAQLHQLRGRVGRGKYQSYCIFMTASK-S 589 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 K + RL +L ++ DGF IA EDL+ R G++ GI+QSG+ F +A LL+ A + Sbjct: 590 KETKERLDILNHSNDGFFIASEDLRLRGPGDLFGIRQSGVLDFKVADVFQDAKLLQNASE 649 Query: 662 DAKHILTQDPDL 673 +A +L DP L Sbjct: 650 EADRLLLDDPKL 661 >gi|321315353|ref|YP_004207640.1| ATP-dependent DNA helicase RecG [Bacillus subtilis BSn5] gi|320021627|gb|ADV96613.1| ATP-dependent DNA helicase RecG [Bacillus subtilis BSn5] Length = 682 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 236/635 (37%), Positives = 365/635 (57%), Gaps = 19/635 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGE 100 DLL Y P + D R + E+ + VT+ G + S +KR L G Sbjct: 33 DLLNYFPYRYDDYELR-DLEEVKHDERVTVEGKVHSEPSLTYYGKKRNRLTFRLLVGHYL 91 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160 IT + F R LK G +TV+GK K + I + N IE VY Sbjct: 92 ITAVCFNRP--YLKKKLSLGSVVTVSGKWDKHRQNISVQE----LKNGPHQEDKSIEPVY 145 Query: 161 SLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 S+ ++V + ++ I +AL++ LP+ + + L + P +A +H P E Sbjct: 146 SVKENVTVKMMRRFIQQALTQYADSLPDPLPEKLRKSYKLPDYYQALKAMHQPETR---E 202 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQE 278 AR R Y+E L Q+ + RK +++ GI + + ++++PF T +Q Sbjct: 203 ALKLARRRFVYEEFLLFQLKMQAFRKAEREQTQGIRQRFSNEELMRFIKSLPFPLTNAQS 262 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +++I DMS RM R+LQGDVGSGKT VA IA+ AA+ +G Q +M P ILA+QH Sbjct: 263 RVLREITADMSSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQHA 322 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + + V ++T ++ R++ LER+A G+ I++GTHAL QD +++ L LV Sbjct: 323 DSLVSLFEKWDVSVALLTSSVKGKRRKELLERLAAGEIDILVGTHALIQDEVEFKALSLV 382 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I DEQHRFGV+QR KL K P VL MTATPIPRTL +T G++D+S I E PAGRK I Sbjct: 383 ITDEQHRFGVEQRKKLRNKGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKRI 442 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-- 516 +T + + +D ++ ++ L +G++AY ICP IEE + + ++ ++ +N L + F Sbjct: 443 ETYWVKHDMLDRILAFVEKELKQGRQAYIICPLIEESDKLDVQNAIDVYNMLSDIFRGKW 502 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 ++ ++HG++ +K+ VM F C++L++TTV+EVG++V +A+I++I +A+ FGL+QL Sbjct: 503 NVGLMHGKLHSDEKDQVMREFSANHCQILVSTTVVEVGVNVPNATIMVIYDADRFGLSQL 562 Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636 HQLRGRVGRGE S CIL+ P S+ R+ ++ T DGF ++E+DL+ R G+ G Sbjct: 563 HQLRGRVGRGEHQSFCILMADPK-SETGKERMRIMSETNDGFELSEKDLELRGPGDFFGK 621 Query: 637 KQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQD 670 KQSGMP+F +A +HD LE AR+DA +++ D Sbjct: 622 KQSGMPEFKVADM-VHDYRALETARQDAANLVASD 655 >gi|312866410|ref|ZP_07726628.1| ATP-dependent DNA helicase RecG [Streptococcus downei F0415] gi|311098104|gb|EFQ56330.1| ATP-dependent DNA helicase RecG [Streptococcus downei F0415] Length = 677 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 240/634 (37%), Positives = 367/634 (57%), Gaps = 23/634 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGE 100 DLL Y+P + D R + E+ V +TG + ++ Q KR + G Sbjct: 37 DLLLYYPFRYEDFKARSVADLVDGEKAV-LTGTVVTPANVQYYGFKRNRLSFKIKQGEAV 95 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160 I + FF + L + G+++ + GK LK+ + + + QD P VY Sbjct: 96 IAVSFFNQP--YLADKIELGQEVALFGKWDALKSALTGMK---LLAQVQDDMQP----VY 146 Query: 161 SLPTGLSVDLFKKIIVEALSR--LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 + G+S + K I A L L E + + LL K A +H P KD Sbjct: 147 HVAQGISQNALIKAIKAAFDSGALSELEENLPQALLAKYRLLDRQTAVRAMHFP---KDL 203 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277 A R+ ++EL Q+ L +++ Q K E G+ I + + ++ ++ +PFS T +Q Sbjct: 204 AQYKQALRRIKFEELFYFQLNLQVLKSQNKSETNGLAIPYKEQAVKQAIQQLPFSLTSAQ 263 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 E ++ ++L DM M R+LQGDVGSGKT++A +AM AA AG Q+ +M P ILAQQH Sbjct: 264 EQSLGEVLADMKSGAHMNRLLQGDVGSGKTVIASLAMFAAHTAGFQSALMVPTEILAQQH 323 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 +E + K + + V ++T M A ++ AL IA G ++I+GTH+L QD + Y+KL L Sbjct: 324 FESLIKLFPD--LNVALLTVGMRPAVKKAALAGIADGSVNMIVGTHSLIQDGVSYHKLGL 381 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI DEQHRFGV QR +K P VL+MTATPIPRTL +T+ G++D+S I + PAGRKP Sbjct: 382 VITDEQHRFGVNQRRVFREKGDNPDVLMMTATPIPRTLAITAFGEMDVSIIDQLPAGRKP 441 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--T 515 I T + +++ V+ L+ +S+G +AY I P IEE + + ++ + L E F Sbjct: 442 IITRWVKHEQLETVLTWLQERISQGAQAYVISPLIEESESLDLKNAQDLHQELVEFFGNQ 501 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A++HGRM + +K+ +M FK+G ++L++TTVIEVG++V +++ III +A+ FGL+Q Sbjct: 502 AQVALMHGRMKNDEKDQIMQDFKDGQSQVLVSTTVIEVGVNVPNSTAIIIMDADRFGLSQ 561 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG++ S C+L+ +P ++ R+ + T DGF++AEEDLK R GEI G Sbjct: 562 LHQLRGRVGRGDKQSYCVLVANPK-NEVGKRRMQAMCQTTDGFVLAEEDLKMRGSGEIFG 620 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669 +QSG+P+F +A ++LE ARK A I+ Q Sbjct: 621 TRQSGIPEFQVADIVEDYNILEEARKVASQIVAQ 654 >gi|115377219|ref|ZP_01464431.1| ATP-dependent DNA helicase RecG [Stigmatella aurantiaca DW4/3-1] gi|310821200|ref|YP_003953558.1| ATP-dependent DNA helicase RecG [Stigmatella aurantiaca DW4/3-1] gi|115365802|gb|EAU64825.1| ATP-dependent DNA helicase RecG [Stigmatella aurantiaca DW4/3-1] gi|309394272|gb|ADO71731.1| ATP-dependent DNA helicase RecG [Stigmatella aurantiaca DW4/3-1] Length = 898 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 243/700 (34%), Positives = 377/700 (53%), Gaps = 40/700 (5%) Query: 6 LNPLFAPLST-FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64 + P PLST + +GK+ L ++ R D+LF P + DR I+E+ Sbjct: 197 IAPRSGPLSTPLKTLGKRLGPRLLGALD--KKGLRRVGDILFLLPRCYEDRRKLKTIAEL 254 Query: 65 SEE-RIVTI-----TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118 R VT+ Y+S + +R +K ++ D +G I +F+ LKN F Sbjct: 255 EPGGRGVTVGLVKTADYVSGRNG-----KRYFKAVVADRSGSIAATYFH-AGPWLKNRFT 308 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHN---SQDVNFPLIEAVYSLPTGLSVDLFKKII 175 G+++ ++G+++ + M HP S V+F I +Y P D ++ Sbjct: 309 VGKRLVLSGEVRASLSGREMAHPEIEPAEDLESSSVHFNRIVPIY--PGFERGD--QRSF 364 Query: 176 VEALSRLP---------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW----TS 222 E SR+ LPE + K L ++ EA IH P E S Sbjct: 365 REVASRVSENYAQHIEEPLPEALRKRL----GLVALPEALRSIHFPPDTAHLEALDAHQS 420 Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282 P+ RLA+DEL Q+ + L R+ K E GI NV + + +PF+ T +Q ++ Sbjct: 421 PSHRRLAFDELFFLQLGMGLKRQNVKTEQGIAFNVSPERVDRARGALPFALTGAQARVVE 480 Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342 ++ QDM++ M R++QGDVGSGKT VA++A A++ G Q +MAP ILA+QH + Sbjct: 481 ELAQDMARPEPMNRLVQGDVGSGKTAVAVVASLLALQDGYQVAVMAPTEILAEQHERSFR 540 Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402 K + V +++ H+R+ E +A G+ H+ +GTHAL Q + + +L L ++DE Sbjct: 541 KLLEPLGFRVGLVSAAGTAKHKREVREALAQGEIHLAVGTHALIQGGVAFERLGLAVIDE 600 Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462 QHRFGV QR L K P VL+MTATPIPRTL +T GD+D+S I E P GR P+ T + Sbjct: 601 QHRFGVLQRHTLMSKGPTPDVLVMTATPIPRTLAMTLYGDLDVSIIDELPPGRTPVATRV 660 Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAII 521 + V E + +++G +AY + P +EE ++ + L + F + + ++ Sbjct: 661 FNEQQRARVYESVGAEIAKGHQAYIVYPLVEESEKLDLEDATRGAEKLQQVFPQARVGLL 720 Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581 HGRM +K++VM++F+ +L+ TTV+EVG+DV +AS++++E AE FGL+QLHQLRG Sbjct: 721 HGRMKAEEKDAVMEAFREQRIHILVCTTVVEVGVDVPNASVMVVEAAERFGLSQLHQLRG 780 Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641 RVGRG IS C L+ S S RL+V++ + DGF+IAE+DL+ R GE LG +QSG+ Sbjct: 781 RVGRGAAISFCYLVASLARSWESSERLAVMEQSSDGFIIAEKDLEIRGPGEFLGTRQSGL 840 Query: 642 PKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681 P+ +A LL +A+ +A+ IL +D L + Q + Sbjct: 841 PELAVANLARDGDLLSLAQAEARRILERDAHLQAPEHQGL 880 >gi|161869430|ref|YP_001598597.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis 053442] gi|161594983|gb|ABX72643.1| DNA helicase [Neisseria meningitidis 053442] Length = 680 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 227/600 (37%), Positives = 340/600 (56%), Gaps = 7/600 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H + R+ + + DG+G + L F + G++I G+IK M Sbjct: 65 HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP + L VY GL+ ++II AL P L + + LL + Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182 Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 P +AE+ ++H+P + + T PA +RL +DELLA Q+++ L R++ Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAA 242 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + +G + Q + + +PF+ T +QE + +I +DM+Q M R+LQGDVGSGKT+VA ++ Sbjct: 243 LGGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSA 302 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A+E+G Q +MAP ILA+QH+ K++ + I V + G++ + + +A ++A G Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 I +GTHALF D + ++ L L IVDEQHRFGV QRL L K H L+M+ATPIPRT Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I E P GR PIKT ++ R EV + +G++AYW+CP IEE Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEE 482 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ E L +I ++HGRM +K VM F +G +L+ATTVIEV Sbjct: 483 SETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEV 542 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +A++++IE+AE GLAQLHQLRGRVGRG S C+LL+ PL + + RL V+ Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA +DL R GE LG +QSG+P A+ E LLE R+ A ++ Q+P++ Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQVREIAPMLIEQNPEI 662 >gi|16078650|ref|NP_389469.1| ATP-dependent DNA helicase RecG [Bacillus subtilis subsp. subtilis str. 168] gi|221309462|ref|ZP_03591309.1| ATP-dependent DNA helicase RecG [Bacillus subtilis subsp. subtilis str. 168] gi|221313787|ref|ZP_03595592.1| ATP-dependent DNA helicase RecG [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318711|ref|ZP_03600005.1| ATP-dependent DNA helicase RecG [Bacillus subtilis subsp. subtilis str. JH642] gi|221322982|ref|ZP_03604276.1| ATP-dependent DNA helicase RecG [Bacillus subtilis subsp. subtilis str. SMY] gi|3914611|sp|O34942|RECG_BACSU RecName: Full=ATP-dependent DNA helicase recG gi|2337816|emb|CAA74246.1| putative RecG protein [Bacillus subtilis subsp. subtilis str. 168] gi|2633959|emb|CAB13460.1| branch migrating ATP-dependent DNA helicase involved in DNA recombination and repair [Bacillus subtilis subsp. subtilis str. 168] Length = 682 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 236/635 (37%), Positives = 365/635 (57%), Gaps = 19/635 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGE 100 DLL Y P + D R + E+ + VT+ G + S +KR L G Sbjct: 33 DLLNYFPYRYDDYELR-DLEEVKHDERVTVEGKVHSEPSLTYYGKKRNRLTFRLLVGHYL 91 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160 IT + F R LK G +TV+GK K + I + N IE VY Sbjct: 92 ITAVCFNRP--YLKKKLSLGSVVTVSGKWDKHRQTISVQE----LKNGPHQEDKSIEPVY 145 Query: 161 SLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 S+ ++V + ++ I +AL++ LP+ + + L + P +A +H P E Sbjct: 146 SVKENVTVKMMRRFIQQALTQYADSLPDPLPEKLRKSYKLPDYYQALKAMHQPETR---E 202 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQE 278 AR R Y+E L Q+ + RK +++ GI + + ++++PF T +Q Sbjct: 203 ALKLARRRFVYEEFLLFQLKMQAFRKAEREQTQGIRQRFSNEELMRFIKSLPFPLTNAQS 262 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +++I DMS RM R+LQGDVGSGKT VA IA+ AA+ +G Q +M P ILA+QH Sbjct: 263 RVLREITADMSSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQHA 322 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + + V ++T ++ R++ LER+A G+ I++GTHAL QD +++ L LV Sbjct: 323 DSLVSLFEKWDVSVALLTSSVKGKRRKELLERLAAGEIDILVGTHALIQDEVEFKALSLV 382 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I DEQHRFGV+QR KL K P VL MTATPIPRTL +T G++D+S I E PAGRK I Sbjct: 383 ITDEQHRFGVEQRKKLRNKGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKRI 442 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-- 516 +T + + +D ++ ++ L +G++AY ICP IEE + + ++ ++ +N L + F Sbjct: 443 ETYWVKHDMLDRILAFVEKELKQGRQAYIICPLIEESDKLDVQNAIDVYNMLSDIFRGKW 502 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 ++ ++HG++ +K+ VM F C++L++TTV+EVG++V +A+I++I +A+ FGL+QL Sbjct: 503 NVGLMHGKLHSDEKDQVMREFSANHCQILVSTTVVEVGVNVPNATIMVIYDADRFGLSQL 562 Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636 HQLRGRVGRGE S CIL+ P S+ R+ ++ T DGF ++E+DL+ R G+ G Sbjct: 563 HQLRGRVGRGEHQSFCILMADPK-SETGKERMRIMSETNDGFELSEKDLELRGPGDFFGK 621 Query: 637 KQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQD 670 KQSGMP+F +A +HD LE AR+DA +++ D Sbjct: 622 KQSGMPEFKVADM-VHDYRALETARQDAANLVASD 655 >gi|291287337|ref|YP_003504153.1| ATP-dependent DNA helicase RecG [Denitrovibrio acetiphilus DSM 12809] gi|290884497|gb|ADD68197.1| ATP-dependent DNA helicase RecG [Denitrovibrio acetiphilus DSM 12809] Length = 761 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 219/622 (35%), Positives = 348/622 (55%), Gaps = 13/622 (2%) Query: 85 QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI 144 ++R YK + + G+ ++F V EG+K T+ G+ ++HP ++ Sbjct: 147 NRKRIYKAVFSGDFGQFAAVWFRFSAGYPAGVLKEGKKYTIYGQSGSFSGMESIIHPQFM 206 Query: 145 FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIA 203 + P VYSLP ++ ++ + AL + L +P+ + L +K FPS Sbjct: 207 KESEMGNIIP----VYSLPKSVAQKVYYTAVNAALDKYLDQIPDHLPARLEEKYKFPSSK 262 Query: 204 EAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259 +A IH P+ + E S PA +R Y+EL Q+ LL ++ ++++ G +++ Sbjct: 263 QALLEIHRPKNPYELEALSEKRHPAAKRFIYEELFYLQMGLLYKKRAYERQSGTVFDIKK 322 Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319 + I +PF T +Q + +I DMS +M R++QGDVGSGKT+VA A AV+ Sbjct: 323 EYLDWIKDLLPFKFTGAQRRVMAEIFNDMSSTGQMNRLVQGDVGSGKTIVAFTAGLVAVK 382 Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379 G Q ++AP +LA+QH + K T + ++TG++ A ++ E IA G + Sbjct: 383 NGYQVAVIAPTEVLARQHMLNLLKLISGTNVTAVLLTGSVSGAEKKHTKELIAAGHVDFV 442 Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439 +GTHA+ Q+ + KL L I+DEQHRFGV+QR L +K P +LLMTATPIPRTL L+ Sbjct: 443 LGTHAVIQEDADFAKLGLAIIDEQHRFGVEQRKSLIEKGYMPDILLMTATPIPRTLALSF 502 Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499 GD+DIS I E P GR PI TV I+ V ++ + +G Y I P I+ ++ + Sbjct: 503 YGDLDISIIDELPPGRTPINTV--SEKNIERVYPLMREEIKKGHGVYVIYPLIDTSEKLD 560 Query: 500 FRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 ++ + L + F ++ ++HGRM K +MD+FK G ++L++TTVIEVG+DV Sbjct: 561 LKAATDEHRKLSQEFGADNVGLLHGRMKHEQKSELMDAFKAGNIQVLVSTTVIEVGVDVP 620 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618 A++++IENAE FGL+QLHQLRGRVGR + S C+L+ +S + R++ + DGF Sbjct: 621 HATVMVIENAERFGLSQLHQLRGRVGRSDRQSYCVLVASENVSDEASERINAMCAHADGF 680 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 ++E DL+ R G+ G +QSG+P+F + +L+ AR DA IL+ D DL+S + Sbjct: 681 KLSEIDLEMRGPGDFFGTRQSGLPEFRFSNIVRDVRILQDARSDAADILSDDQDLSSPKN 740 Query: 679 QSIRILLYLYQYNEAFQFIRAG 700 I+ +L + ++ Q+I G Sbjct: 741 TVIKQVL-IRKWRSELQYIEIG 761 >gi|327489060|gb|EGF20855.1| DNA helicase RecG [Streptococcus sanguinis SK1058] Length = 671 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 237/667 (35%), Positives = 378/667 (56%), Gaps = 22/667 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL+ GVG K + +K+ ET DLL Y P + D + + ++ + Sbjct: 3 LHQPLTVLPGVGPKSAEKFAKL-----GLET-LQDLLLYFPFRYEDFKSK-NVLDLEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + ++ Q + ++ GE+ L + L + G I V GK Sbjct: 56 KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188 K K + + + +D P+ + V L K + L L L E Sbjct: 116 WDKAKASLTGMK---LLAQVEDDLQPVYRLAQRISQASLVKLIKTAFDQGLDLL--LEEN 170 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248 + + LL++ S EA +H P+ D++ A R+ ++EL Q+ L +++++ K Sbjct: 171 LPQPLLERYQLVSRVEAVRAMHFPKDLADYK---QALRRVKFEELFYFQMQLQVLKRETK 227 Query: 249 K-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 G+ I+ + +++PF T +QE ++ +ILQD+ M R+LQGDVGSGKT Sbjct: 228 AVSNGLKIDWQSDAVAVKKKSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVGSGKT 287 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +VA +AM A AG Q+ +M P ILA+QH++ + + ++ + ++TG M A RR+ Sbjct: 288 VVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAERRET 345 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 L I GQ +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR L +K P VL+MT Sbjct: 346 LAAIEKGQVDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDVLMMT 405 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T+ GD+D+S I + PAGRKP+ T + +++ V++ LK L +G + Y+ Sbjct: 406 ATPIPRTLAITAFGDMDVSIIDQMPAGRKPVITRWVKHEQLEVVLDWLKKELHKGAQVYF 465 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545 I P IEE + + ++ + L +F + +A++HG+M +KE++M FK G +L Sbjct: 466 ISPLIEESEALDLKNAIALEEELTAYFGQQAQVALLHGKMKSEEKEAIMQDFKEGRTDIL 525 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 ++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S +L+ +P +++ Sbjct: 526 VSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-TESGK 584 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665 R+ ++ T DGFL+AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 585 RRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARKVASQ 644 Query: 666 ILTQDPD 672 I T DP+ Sbjct: 645 I-TADPN 650 >gi|288925182|ref|ZP_06419117.1| ATP-dependent DNA helicase RecG [Prevotella buccae D17] gi|288337947|gb|EFC76298.1| ATP-dependent DNA helicase RecG [Prevotella buccae D17] Length = 699 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 244/669 (36%), Positives = 377/669 (56%), Gaps = 26/669 (3%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + LS+ + + DL Y+P ++DR I E++ + V + G I Sbjct: 14 GVGPRRKEILSRELGINT-----YGDLAEYYPYKYVDRSRLYTIDELTADMPFVQLKGRI 68 Query: 77 SQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 F + R+ + +DG G + L++F T+ + + + G V GK R Sbjct: 69 LSFDEFVMGPRKKRIVAHFSDGHGVVDLVWF-NGTKYVYDSYKTGTDYIVFGKPGIFGGR 127 Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLP--------TGLSVDLFKKIIVEALSRLPVLPE 187 VHP + ++ ++ YS T ++ K ++E LS P LPE Sbjct: 128 YQFVHPDIDDASKLQLSEMGMQPYYSTTEKMKKANFTSRGIEKITKTLIEKLS--PQLPE 185 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247 + +L + S +A IH P+ A + + AR RL ++EL Q+ +L Sbjct: 186 TLPDFILNRLHLVSRPQALRWIHYPKNADEMQ---RARLRLKFEELFYVQLNILRYASDN 242 Query: 248 KKEI-GIPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 +++ G N G I R N+PF T +Q+ + +I DM +M R+LQGDVGSG Sbjct: 243 RRKYRGYVFNRVGDIFNGFYRHNLPFPLTGAQKRVMHEIRADMGSGRQMNRLLQGDVGSG 302 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KTLVAL++M A++ G QA IMAP ILA+QH IK + + I VE++TG + R+ Sbjct: 303 KTLVALMSMLIALDNGFQACIMAPTEILAEQHLHTIKDFLKGMDIRVELLTGIVKGKKRK 362 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVL 424 + L + G HI +GTHAL +D++Q+ +L L +VDEQHRFGV QR KL K PHVL Sbjct: 363 EVLAGLLDGSIHIAVGTHALIEDTVQFRQLGLAVVDEQHRFGVAQRAKLWAKNENPPHVL 422 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 +MTATPIPRTL +T GD+D+S I E P GRKPI+T+ N+ + + ++ ++EG++ Sbjct: 423 VMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTIHKYDNQTTSLYQGIRQQIAEGRQ 482 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y + P I+E ++ + +++ E + +L + F ++ +HGRM +KE M F G + Sbjct: 483 VYIVFPLIKESEKMDLKNLEEGYEALKDVFPGYRMSKVHGRMKAAEKEEEMQKFVKGETQ 542 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+ + LS Sbjct: 543 ILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQSYCILVTNYQLSAE 602 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKD 662 + R+ ++ +T DGF IAE DLK R G++ G +QSG+ L IA ++++AR + Sbjct: 603 TRKRIDIMCDTNDGFRIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQIIQLARDE 662 Query: 663 AKHILTQDP 671 A+ I+ DP Sbjct: 663 AQKIIEDDP 671 >gi|313669001|ref|YP_004049285.1| DNA helicase [Neisseria lactamica ST-640] gi|313006463|emb|CBN87926.1| putative DNA helicase [Neisseria lactamica 020-06] Length = 680 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 227/600 (37%), Positives = 340/600 (56%), Gaps = 7/600 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H + R+ + + DG+G + L F + G++I G+IK M Sbjct: 65 HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYAGHQKQTAVGKRIRAVGEIKHGFYGDEM 124 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP + L VY GL+ ++II AL P L + + LL + Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182 Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 P +AE+ ++H+P + + T PA +RL +DELLA Q+++ L R++ Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGTAAA 242 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + G + Q + + +PF+ T +QE + +I +DM+Q M R+LQGDVGSGKT+VA ++ Sbjct: 243 LRGNGVLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSA 302 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A+E+G Q +MAP ILA+QH+ K++ + I V + G++ + + +A ++A G Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 I +GTHALF D + ++ L L IVDEQHRFGV QRL L K H L+M+ATPIPRT Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I + P GR PIKT ++ R EV + +G++AYW+CP IEE Sbjct: 423 LAMSFFADLDVSVIDKLPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEE 482 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ E L +I ++HGRM +K VM F +G +L+ATTVIEV Sbjct: 483 SETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMTRFSSGELNVLVATTVIEV 542 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +A++++IE+AE GLAQLHQLRGRVGRG S C+LL+ PL + + RL V+ Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA +DL R GE LG +QSG+P A+ E LLE AR+ A ++ Q+P++ Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 662 >gi|148984139|ref|ZP_01817434.1| N-acetylmannosamine-6-phosphate 2-epimerase [Streptococcus pneumoniae SP3-BS71] gi|225861521|ref|YP_002743030.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae Taiwan19F-14] gi|147923428|gb|EDK74541.1| N-acetylmannosamine-6-phosphate 2-epimerase [Streptococcus pneumoniae SP3-BS71] gi|225728405|gb|ACO24256.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae Taiwan19F-14] gi|301800505|emb|CBW33144.1| ATP-dependent DNA helicase [Streptococcus pneumoniae OXC141] gi|327389882|gb|EGE88227.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA04375] gi|332200255|gb|EGJ14328.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA47368] Length = 671 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 240/663 (36%), Positives = 379/663 (57%), Gaps = 25/663 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL K S +A +H P KD A R+ ++EL Q+ L ++ + Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ ++ + + ++PF+ T++QE ++++IL DM + M R+LQGDVGSG Sbjct: 226 NRVQGSGLVLDWSQEKVTAVKASLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QA +M P ILA+QH+E ++ N ++ ++TG++ A +R Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T I ++ +V+ L+ + +G + Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQV 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + +A++HGRM +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKTEVALLHGRMKSDEKDQIMQDFKERKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + + Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642 Query: 664 KHI 666 +I Sbjct: 643 SYI 645 >gi|254468480|ref|ZP_05081886.1| ATP-dependent DNA helicase RecG [beta proteobacterium KB13] gi|207087290|gb|EDZ64573.1| ATP-dependent DNA helicase RecG [beta proteobacterium KB13] Length = 682 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 240/657 (36%), Positives = 366/657 (55%), Gaps = 31/657 (4%) Query: 37 NETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLND 96 N + DLL + P + DR I ++ + + G + + +R + L D Sbjct: 17 NIQNWFDLLLHLPVRYEDRTKITDIQDLKDNAFSQVLGKVID-VDIVFRGKRNLVVHLED 75 Query: 97 GTGE---ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153 G G+ + L FY K F G+ + G ++K ++HP N+Q+V Sbjct: 76 GCGDQISLRYLHFYPNQ---KAQFKVGKYVLAAGNVRKNLITTEIIHPETAVFNAQEVVL 132 Query: 154 PL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP---SIAEAFNII 209 P + +YS+ +GL ++I +AL + + ++L KS ++ ++ I Sbjct: 133 PENLTPIYSVTSGLGQKNIYRLINKAL-EFASSQKLLNFEILNHKSKTDGVNLLDSLYAI 191 Query: 210 HNPRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-IAQK 264 H P K D + +++ + + Y ELL+ Q+ L L + +FK + ++ + Sbjct: 192 HQPNKNCDLQELNYFSTIFHQHIKYAELLSQQLYLKLSKDEFKNQKSKIFTLKNNNLKDS 251 Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324 IL ++PF T+SQE I +I DMS M R+LQGDVGSGKT+VA+I + Q Sbjct: 252 ILNSLPFKLTESQEQVIHEIESDMSSGKVMHRLLQGDVGSGKTIVAIIVSTLILNNEYQV 311 Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384 MAP ILA QH++ IK+ Q+T + VE++TG++ R + ++ I G+ H +IGTHA Sbjct: 312 AFMAPTEILANQHFKKIKELFQSTDVRVELLTGSIKGRKRNEIIDDIESGKIHYVIGTHA 371 Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSL 440 LFQD+I + KL L I+DEQHRFGV+QRL L K PH+L+M+ATPIPRTL ++ Sbjct: 372 LFQDNIYFKKLGLCIIDEQHRFGVKQRLDLMSKGKKDGHQPHLLMMSATPIPRTLSMSYF 431 Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500 D+++S ++E P R PI T ++ +R E+++ LK L+ + YW+CP +EE ++ Sbjct: 432 ADLEVSTLSELPKDRVPIVTKLVRDSRRKELMQMLKNELNNDNQIYWVCPLVEESEKLTL 491 Query: 501 RSVVERFNSLHEHFTSSI-----AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555 V + E F S I IIHGRM D +K+ VM + KLL+ATTVIEVG+ Sbjct: 492 SDAVNTY----EEFISFIPKEMVGIIHGRMKDQEKDEVMSKYLQKKIKLLVATTVIEVGV 547 Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615 DV +AS ++IE+AE GL+QLHQLRGRVGRG + S+CIL++ LS+ + RL ++ + Sbjct: 548 DVPNASFMVIEHAERMGLSQLHQLRGRVGRGAKKSTCILIFKENLSELAKQRLKIIYENQ 607 Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ-PELHDSLLEIARKDAKHILTQDP 671 DGFLIAE DLK R GE++G +QSG+P IA E D + E++ I + P Sbjct: 608 DGFLIAENDLKIRGPGEMIGTRQSGVPGLRIANLVEDADLVKEVSDYSGNAIKSNKP 664 >gi|91214598|ref|ZP_01251571.1| ATP-dependent DNA helicase RecG [Psychroflexus torquis ATCC 700755] gi|91187025|gb|EAS73395.1| ATP-dependent DNA helicase RecG [Psychroflexus torquis ATCC 700755] Length = 700 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 247/682 (36%), Positives = 379/682 (55%), Gaps = 30/682 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L P+ +GVG + L ++ + F +LL + P +ID+ KISE+ + Sbjct: 6 LQTPIEYLKGVGPNRADLLKTELHIHS-----FQNLLEFFPFRYIDKSRFYKISELQDNS 60 Query: 69 I-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 V I G I+ + +++ + D TG I L++F +L+NV + + G Sbjct: 61 AEVQIIGKITGVRTLPMKQGKRVVANFQDDTGSIELVWFRGHKWILENVNTNAPYV-IFG 119 Query: 128 KIKKLKNRIIMVHPHY-----IFHNSQDVNFPLIEAVYSLPT-GLSVDLFKKIIVEALSR 181 K+ M HP S +P+ + L G+S + ++ L + Sbjct: 120 KLNNFNGSFSMPHPEIEELEKAKTKSNVKMYPVYPSTEKLSKRGISNRMISTLMFGLLEQ 179 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 E + ++ S EA +H P+ + E + A+ RL ++E Q+ LL Sbjct: 180 SGNFSETLPSSIIADLKLISKTEAMINVHFPQSS---ELLAKAQFRLKFEEFFYIQLQLL 236 Query: 242 LMRKQFKKEI-GIPINVEGKIAQKILRNI-PFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 K +I G G+ + PF T +Q+ +K+I +D+ +M R+LQ Sbjct: 237 RKNAVHKSKIKGFRFKQVGEYFNAFYNTVLPFELTGAQKRVLKEIRKDLGSNAQMNRLLQ 296 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT+VAL++M A++ G QA +MAP ILA QHYE I + + + VEI+TG+ Sbjct: 297 GDVGSGKTIVALMSMLIAIDNGFQACLMAPTEILASQHYEGISELCEPIGVQVEILTGST 356 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + R+ ER+ +G+ HI+IGTHAL +D++++ + L ++DEQHRFGV QR KL +K T Sbjct: 357 KKKDRKVLHERLQNGELHILIGTHALIEDTVKFKNIGLAVIDEQHRFGVAQRAKLWKKNT 416 Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID----EVIER 474 PHVL+MTATPIPRTL ++ GD+DIS I E P GRKPIKTV +R D +V + Sbjct: 417 LPPHVLVMTATPIPRTLAMSLYGDLDISVIDELPPGRKPIKTV----HRFDSNRLKVFKF 472 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKE 531 +K + +G++ Y + P IEE +++ +++ + S+ F I+I+HG+M DK Sbjct: 473 IKDEVHKGRQVYIVYPLIEESANFDYKDLMDGYASIEREFPKPKYQISIVHGKMKPQDKA 532 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 M+ F G ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRVGRG E S Sbjct: 533 YEMERFVKGKTQIMVATTVIEVGVNVPNASLMIIESAERFGLSQLHQLRGRVGRGAEQSY 592 Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 C+L+ LS + TR+ L T DGF IAE DLK R G ++G +QSG+ + IA Sbjct: 593 CVLITGKKLSADGKTRMETLTGTNDGFEIAEVDLKLRGPGNLMGTQQSGVLELKIADLVK 652 Query: 652 HDSLLEIARKDAKHILTQDPDL 673 + +L+IAR A H++ DP+ Sbjct: 653 DNQILKIARSYAHHVIKADPNF 674 >gi|328553517|gb|AEB24009.1| ATP-dependent DNA helicase RecG [Bacillus amyloliquefaciens TA208] Length = 682 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 229/637 (35%), Positives = 364/637 (57%), Gaps = 23/637 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSF----QLQKRRPYKILLNDGT 98 DLL Y P + D R + E+ E VT+ G + S + + R +++L+ G Sbjct: 33 DLLNYFPYRYDDYELR-DLEEVKHEERVTVEGKVHSEPSLTYYGKKRNRLTFRVLV--GN 89 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 IT + F R LK G +T++GK K + + + N IE Sbjct: 90 YLITAVCFNRP--YLKKKLTLGSVVTISGKWDKHRQTVSVQE----LKNGPHQEDKSIEP 143 Query: 159 VYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 VYS+ ++V + ++ I EAL L + + + + L P +A +H P + Sbjct: 144 VYSVKENVTVKMMRRFIKEALKHHLDNIADPLPEKLRISYKLPDYKQALQTMHQPETRES 203 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKS 276 + AR R Y+E L Q+ + RK +++ GI + ++PFS T + Sbjct: 204 LQ---QARRRFVYEEFLLFQLKMQAFRKAEREQSKGISHVFPAEKLAAFTASLPFSLTNA 260 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q +++I D++ RM R+LQGDVGSGKT VA I + AA+ +G Q +M P ILA+Q Sbjct: 261 QMRVLREITADLTSPYRMNRLLQGDVGSGKTAVAAITLYAAILSGYQGALMVPTEILAEQ 320 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 H + + N + + ++T ++ RR+ LER+A G+ I++GTHAL QD +++ L Sbjct: 321 HADSLVSLFANEDVNIALLTSSVKGKRRRELLERLALGEIDILVGTHALIQDEVEFKALS 380 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 LVI DEQHRFGV QR KL K P VL MTATPIPRTL +T G++D+S I E PAGRK Sbjct: 381 LVITDEQHRFGVDQRKKLRNKGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRK 440 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 I+T + + ++ ++ ++ L +G++AY ICP IEE + + ++ ++ +N L E + Sbjct: 441 QIETYWVKHDMLERILAFIEKELKQGRQAYIICPLIEESDKLDVQNAIDVYNMLSEVYRG 500 Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 ++ ++HG++ +K+ VM F C++L++TTV+EVG++V +A+I++I +A+ FGL+ Sbjct: 501 KWNVGLMHGKLHSDEKDQVMREFSANQCQVLVSTTVVEVGVNVPNATIMVIYDADRFGLS 560 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG+ S CIL+ P S+ R+ ++ T DGF ++E+DL+ R G+ Sbjct: 561 QLHQLRGRVGRGDHQSFCILMADPK-SETGKERMRIMSETNDGFELSEKDLELRGPGDFF 619 Query: 635 GIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQD 670 G KQSGMP+F +A +HD LE AR+DA ++++ + Sbjct: 620 GKKQSGMPEFKVADM-VHDYRALETARQDAANLVSSE 655 >gi|332360531|gb|EGJ38341.1| DNA helicase RecG [Streptococcus sanguinis SK1056] Length = 671 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 239/665 (35%), Positives = 380/665 (57%), Gaps = 29/665 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL+ GVG K + +K+ ET DLL Y P + D + + ++ + Sbjct: 3 LHQPLTVLPGVGPKSAEKFAKL-----GLET-LQDLLLYFPFRYEDFKSK-NVLDLEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + ++ Q + ++ GE+ L + L + G I V GK Sbjct: 56 KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184 K K + + + +D ++ VY L G+S V L K + L L Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDML-- 166 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 L E + + LL++ S EA +H P+ D++ A R+ ++EL Q+ L +++ Sbjct: 167 LEENLPQPLLERYQLVSRVEAVRAMHFPKDLADYK---QALRRVKFEELFYFQMQLQVLK 223 Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 ++ K G+ I+ + + +++PF T +QE ++ +ILQD+ M R+LQGDVG Sbjct: 224 RETKAVSNGLKIDWQLDAVAEKKQSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVG 283 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA +AM A AG Q+ +M P ILA+QH++ + + ++ + ++TG M A Sbjct: 284 SGKTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDNLAQLF--PELKLALLTGGMKAAE 341 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR L I +GQ +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR L +K P V Sbjct: 342 RRAILSAIENGQVDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDV 401 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T + +++ V++ LK L +G Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLKKELHKGA 461 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541 + Y+I P IEE + + ++ + L +F + +A++HG+M +KE++M FK G Sbjct: 462 QVYFISPLIEESEALDLKNAIALEEELTAYFGQQAQVALLHGKMKSEEKEAIMQDFKEGR 521 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S +L+ +P + Sbjct: 522 TDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-T 580 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 ++ R+ ++ T DGFL+AEEDLK R GEI G +QSG+P+F +A +LE ARK Sbjct: 581 ESGKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640 Query: 662 DAKHI 666 A I Sbjct: 641 VASQI 645 >gi|291484138|dbj|BAI85213.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. natto BEST195] Length = 682 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 236/635 (37%), Positives = 365/635 (57%), Gaps = 19/635 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGE 100 DLL Y P + D R + E+ + VT+ G + S +KR L G Sbjct: 33 DLLNYFPYRYDDYELR-DLEEVKHDERVTVEGKVHSEPSLTYYGKKRNRLTFRLLVGHYL 91 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160 IT + F R LK G +TV+GK K + I + N IE VY Sbjct: 92 ITAVCFNRP--YLKKQLSLGSVVTVSGKWDKHRQTISVQE----LKNGPHQEDKSIEPVY 145 Query: 161 SLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 S+ ++V + ++ I +AL++ LP+ + + L + P +A +H P E Sbjct: 146 SVKENVTVKMMRRFIQQALTQYADSLPDPLPEKLRKSYKLPDYYQALKAMHQPETR---E 202 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQE 278 AR R Y+E L Q+ + RK +++ GI + + ++++PF T +Q Sbjct: 203 ALKLARRRFVYEEFLLFQLKMQAFRKAEREQTQGIRQRFSNEELMRFIKSLPFPLTNAQS 262 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +++I DMS RM R+LQGDVGSGKT VA IA+ AA+ +G Q +M P ILA+QH Sbjct: 263 RVLREITADMSSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQHA 322 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + + V ++T ++ R++ LER+A G+ I++GTHAL QD +++ L LV Sbjct: 323 DSLVSLFEKWDVSVALLTSSVKGKRRKELLERLAAGEIDILVGTHALIQDEVEFKALSLV 382 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I DEQHRFGV+QR KL K P VL MTATPIPRTL +T G++D+S I E PAGRK I Sbjct: 383 ITDEQHRFGVEQRKKLRNKGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKRI 442 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-- 516 +T + + +D ++ ++ L +G++AY ICP IEE + + ++ ++ +N L + F Sbjct: 443 ETYWVKHDMLDRILAFVEKELKQGRQAYIICPLIEESDKLDVQNAIDVYNMLSDIFRGKW 502 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 ++ ++HG++ +K+ VM F C++L++TTV+EVG++V +A+I++I +A+ FGL+QL Sbjct: 503 NVGLMHGKLHSDEKDQVMREFSANHCQILVSTTVVEVGVNVPNATIMVIYDADRFGLSQL 562 Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636 HQLRGRVGRGE S CIL+ P S+ R+ ++ T DGF ++E+DL+ R G+ G Sbjct: 563 HQLRGRVGRGEHQSFCILMADPK-SETGKERMRIMSETNDGFELSEKDLELRGPGDFFGK 621 Query: 637 KQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQD 670 KQSGMP+F +A +HD LE AR+DA +++ D Sbjct: 622 KQSGMPEFKVADM-VHDYRALETARQDAANLVASD 655 >gi|325141701|gb|EGC64160.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis 961-5945] gi|325197708|gb|ADY93164.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis G2136] Length = 680 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 227/600 (37%), Positives = 340/600 (56%), Gaps = 7/600 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H + R+ + + DG+G + L F + G++I G+IK M Sbjct: 65 HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAIGKRIRAVGEIKHGFYGDEM 124 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP + L VY GL+ ++II AL P L + + LL + Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182 Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 P +AE+ ++H+P + + T PA +RL +DELLA Q+++ L R++ Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAA 242 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + +G + Q + + +PF+ T +QE + +I +DM+Q M R+LQGDVGSGKT+VA ++ Sbjct: 243 LGGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSA 302 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A+E+G Q +MAP ILA+QH+ K++ + I V + G++ + + +A ++A G Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 I +GTHALF D + ++ L L IVDEQHRFGV QRL L K H L+M+ATPIPRT Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I E P GR PIKT ++ R EV + +G++AYW+CP IEE Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEE 482 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ E L +I ++HGRM +K VM F +G +L+ATTVIEV Sbjct: 483 SETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEV 542 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +A++++IE+AE GLAQLHQLRGRVGRG S C+LL+ PL + + RL V+ Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA +DL R GE LG +QSG+P A+ E LLE R+ A ++ Q+P++ Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQVREIAPMLIEQNPEI 662 >gi|308389889|gb|ADO32209.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis alpha710] gi|325135657|gb|EGC58273.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis M0579] gi|325201565|gb|ADY97019.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis M01-240149] gi|325207546|gb|ADZ02998.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis NZ-05/33] Length = 680 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 228/600 (38%), Positives = 341/600 (56%), Gaps = 7/600 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H + R+ + + DG+G + L F + G++I G+IK M Sbjct: 65 HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP + L VY GL+ ++II AL P L + + LL + Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182 Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 P +AE+ ++H+P + + T PA +RL +DELLA Q+++ L R++ Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAA 242 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + +G + Q + + +PF+ T +QE + +I +DM+Q M R+LQGDVGSGKT+VA ++ Sbjct: 243 LGGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSA 302 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A+E+G Q +MAP ILA+QH+ K++ + I V + G++ + + +A ++A G Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 I IGTHALF D + ++ L L IVDEQHRFGV QRL L K H L+M+ATPIPRT Sbjct: 363 SVKIAIGTHALFSDGVTFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I + P GR PIKT ++ R EV + +G++AYW+CP IEE Sbjct: 423 LAMSFFADLDVSVIDKLPPGRTPIKTRLVNNVRRAEVEGFVLNTCRKGRQAYWVCPLIEE 482 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ E L +I ++HGRM +K VM F +G +L+ATTVIEV Sbjct: 483 SETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGELNVLVATTVIEV 542 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +A++++IE+AE GLAQLHQLRGRVGRG S C+LL+ PL + + RL V+ Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA +DL R GE LG +QSG+P A+ E LLE AR+ A ++ Q+P++ Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQAREIAPILIEQNPEI 662 >gi|270292353|ref|ZP_06198564.1| ATP-dependent DNA helicase RecG [Streptococcus sp. M143] gi|270278332|gb|EFA24178.1| ATP-dependent DNA helicase RecG [Streptococcus sp. M143] Length = 671 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 240/665 (36%), Positives = 377/665 (56%), Gaps = 29/665 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ ++ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLDLEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184 + K + + + +D ++ VY L G+S V++ K + L L Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQAGLVNVIKTAFDQGLDLL-- 166 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 + E + + LL K S +A +H P KD A R+ ++EL Q+ L ++ Sbjct: 167 IEENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLK 223 Query: 245 KQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 + + + G+ +N + N+PFS T +QE ++++IL DM + M R+LQGDVG Sbjct: 224 SENRVQGSGLVLNWSKEKVTAAKENLPFSLTPAQEKSLREILTDMKSDHHMNRLLQGDVG 283 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA +AM AAV AG QA +M P ILA+QH+E ++ + ++ ++TG++ A Sbjct: 284 SGKTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPDLKLA--LLTGSLKAAE 341 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 +R+ LE IA G+A +IIGTHAL QD + Y +L L+I+DEQHRFGV QR L +K P V Sbjct: 342 KREVLETIAKGEADLIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRVLREKGDNPDV 401 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T I ++ +V+ L+ + +G Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGS 461 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGT 541 +AY I P IEE + + ++ + L HF + +A++HG+M +K+ +M FK Sbjct: 462 QAYVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQEFKERK 521 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + Sbjct: 522 TDILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-T 580 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 + R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK Sbjct: 581 DSGKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARK 640 Query: 662 DAKHI 666 A +I Sbjct: 641 VASYI 645 >gi|317498522|ref|ZP_07956816.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium 5_1_63FAA] gi|316894215|gb|EFV16403.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium 5_1_63FAA] Length = 676 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 230/667 (34%), Positives = 367/667 (55%), Gaps = 19/667 (2%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFID-LLFYHPSSFIDRHYRPKISEISEERIVTITG 74 +G+G+K + ++ R +D L+ +P ++ ++EI + V+I Sbjct: 10 LKGIGEKSATAFGRL-------GIRDVDSLITMYPKYYLTYEDPKDVNEIEIGQRVSIFV 62 Query: 75 YISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133 I+ Q KR + D TG I L+++ LK +GR TG Sbjct: 63 RINSEVHIQYAKRMKIVTCTAKDHTGTIMLVWY--NMPYLKKQLHQGRDYIFTGTPIYKN 120 Query: 134 NRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193 RI M HP + ++ VY L +GL+ L K + + + +PE++ +++ Sbjct: 121 GRITMEHPEIFTQEDYEAKQETLQPVYPLTSGLTNKLVSKAVAQTKDYIFHIPEYLPQNI 180 Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIG 252 L + +A IH P E A++RL +DE A+ ++ + KE G Sbjct: 181 LDQYQPMEYHQAIWNIHFPESK---EQLIKAKKRLIFDEFFIFIAAMHMITSGEDLKEEG 237 Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312 I V K A+++++N+P+ T +Q+ A+ ++ +DM+ M R++QGDVGSGKT++A+I Sbjct: 238 YKIGV-CKEAKELVKNLPYELTTAQKRALNEMAKDMASGKVMNRLVQGDVGSGKTILAVI 296 Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372 + +AG Q V+MAP +LA QHYE + ++ I + ++TG+ +R+ ++I Sbjct: 297 LLLMCAKAGYQGVLMAPTEVLAAQHYESFTELLESYDIKIALLTGSTKTKEKRETYQKIK 356 Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432 G+ I+IGTHA+ QD ++Y KL LVI DEQHRFGV+QR L+ K PHVL+M+ATPIP Sbjct: 357 DGEVDIVIGTHAVIQDKVEYNKLALVITDEQHRFGVRQRESLSLKGKKPHVLVMSATPIP 416 Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492 RTL + GD+D+S I E PA R PIK ++ + ++ +S+G++ Y ICP + Sbjct: 417 RTLAIILYGDLDVSIIDELPAERLPIKNCVVNTSYRPTAYRFIEKQVSQGRQVYIICPMV 476 Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTV 550 EE + +V++ L F S+ I +HG+M DK+ VMD F G +L++TTV Sbjct: 477 EESETMEGENVIQYAQMLRSQFAPSVRISYLHGKMKAADKQKVMDDFSEGKIDVLVSTTV 536 Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610 +EVG++V +A+++++ENAE FGLAQLHQLRGRVGRG S CI + K + RL V Sbjct: 537 VEVGVNVPNATVMMVENAERFGLAQLHQLRGRVGRGGYQSYCIFMTSSK-KKETMQRLEV 595 Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670 L + DGF IA EDLK R G+ G++QSGM F++A + +++ A K + Sbjct: 596 LNKSNDGFYIANEDLKLRGPGDFFGVRQSGMMDFVLADIYTNADIMKQAADAVKQLEESG 655 Query: 671 PDLTSVR 677 D ++++ Sbjct: 656 FDFSNLK 662 >gi|255535594|ref|YP_003095965.1| ATP-dependent DNA helicase RecG [Flavobacteriaceae bacterium 3519-10] gi|255341790|gb|ACU07903.1| ATP-dependent DNA helicase RecG [Flavobacteriaceae bacterium 3519-10] Length = 696 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 244/695 (35%), Positives = 390/695 (56%), Gaps = 24/695 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE- 67 L P+ +G+G + + F+ ++ D L ++P +ID+ I+++ EE Sbjct: 3 LDTPIEFLKGIGPERAKFIKNVLGIAMVE-----DFLTFYPIRYIDKSKLYFINDLKEEP 57 Query: 68 -RIVTITGYIS--QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124 + + G I+ Q + K+R D TG + L++F R ++ +K+ I Sbjct: 58 EAEIQLKGKITDLQEMGYGNGKKR-LSAKFRDETGTLELVWF-RYSKWMKDQLPLNTDIF 115 Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVN---FPLIEAVYSLPT-GLSVDLFKKIIVEALS 180 + GK+ M HP + + ++ P+ L G++ F+ ++ E Sbjct: 116 IFGKVNLFNGTFSMAHPEIEINEKKALSGSLLPIYPGSEKLSKRGINNKFFQVVLAEITR 175 Query: 181 RLPVL-PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 LP L E + L++K S AF IH P KDF A R+ ++E Q+ Sbjct: 176 NLPALIQENLPDALMKKLKLISRIHAFYHIHFP---KDFNHFEHANRRIKFEEAFFFQLG 232 Query: 240 LLLMRKQFKKEI-GIPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 L ++ K + G P + GK + ++PF T +Q+ +K+I DM + +M R+ Sbjct: 233 YGLKKQHHKTSVVGNPFSKIGKNFKGFYEHSMPFELTNAQKRVLKEIRTDMKKPVQMNRL 292 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 LQGDVGSGKT+VAL+AM A++ G Q+ +MAP ILAQQH+ IK+ T+ T I + ++TG Sbjct: 293 LQGDVGSGKTMVALLAMLIAMDNGFQSCLMAPTEILAQQHFNSIKELTEKTDIKIRLLTG 352 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 + + R+ E + G+ I++GTHA+ +D +++ L L I+DEQHRFGV QR +L K Sbjct: 353 STKTSDRKIIHEELLSGELTILVGTHAVLEDIVRFRNLGLAIIDEQHRFGVAQRARLWAK 412 Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 APH+L+MTATPIPRTL ++ D+D+S I E P GRKPI T V K Sbjct: 413 NKIAPHILVMTATPIPRTLAMSFYSDLDVSVIDEMPVGRKPIITAHRREKDRLSVFRFAK 472 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA-IIHGRMSDIDKESVMD 535 + +G++ Y++ P IEE + ++++++E ++ + E F A ++HGRM +KE+ M Sbjct: 473 DEIEKGRQVYFVYPLIEESETLDYKNLLENYDHIVEFFEGKNATMLHGRMKPAEKEAAMK 532 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F +G ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRVGRG E S CIL+ Sbjct: 533 YFASGKAEIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVGRGGEQSYCILM 592 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 L+K S TR+ + T DGF I+E D++ R G+ILG +QSG+ F ++ Sbjct: 593 TSDKLTKESRTRVKTMTETNDGFKISEVDMQLRGPGDILGTQQSGVVDFKKLDLVADGTI 652 Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690 +++A+K + +L DP L S +S++ Y+ QY Sbjct: 653 IQVAKKTVEVLLKHDPHLQSDENRSLKN-YYVKQY 686 >gi|254804394|ref|YP_003082615.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha14] gi|254667936|emb|CBA04143.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha14] Length = 680 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 225/600 (37%), Positives = 342/600 (57%), Gaps = 7/600 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H + R+ + + DG+G + L F + G++I G+IK M Sbjct: 65 HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAIGKRIRAVGEIKHGFYGDEM 124 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP + L VY GL+ ++II AL P L + + LL + Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182 Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 P +AE+ ++H+P + + T P+ +RL +DELLA Q+++ L R++ Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPSWQRLKFDELLAQQLSMRLARQKRIGGSATA 242 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 ++ +G + Q + +PF+ T +Q+ + +I +DM+Q M R+LQGDVGSGKT+VA ++ Sbjct: 243 LSGDGTLTQALRHALPFALTDAQKKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSA 302 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A+E+G Q +MAP ILA+QH+ K++ + + V ++G+ + + +A ++A G Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADG 362 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 I +GTHALF D + ++ L L IVDEQHRFGV QRL L K H L+M+ATPIPRT Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLSIVDEQHRFGVAQRLALKNKGCDVHQLMMSATPIPRT 422 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I E P GR PIKT ++ R EV + + +G++AYW+CP IEE Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIEE 482 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ E L +I ++HGRM +K VM F +G +L+ATTVIEV Sbjct: 483 SETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEV 542 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +A++++IE+AE GLAQLHQLRGRVGRG S C+LL+ PL + + RL V+ Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA +DL R GE LG +QSG+P A+ E LLE AR+ A ++ Q+P++ Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 662 >gi|55823618|ref|YP_142059.1| ATP-dependent DNA helicase RecG [Streptococcus thermophilus CNRZ1066] gi|55739603|gb|AAV63244.1| ATP-dependent DNA helicase [Streptococcus thermophilus CNRZ1066] Length = 672 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 247/673 (36%), Positives = 389/673 (57%), Gaps = 34/673 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEISEE 67 L +P++ +G G K + +K+ + DLL Y P + D ++ K I E+ + Sbjct: 4 LDSPIADLKGFGPKSAEKFTKL------DLHTVGDLLLYFPFRYED--FKSKSIFELMDG 55 Query: 68 RIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 ITG + ++ Q KR + G I + FF + L + F G ++ + Sbjct: 56 EKAVITGTVVTPANVQYYGFKRNRLSFKIKQGEAVIAINFFNQP--YLVDKFEVGAEVAI 113 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS-VDLFKKIIVEALS-RLP 183 GK + K+ + + + H D ++ VY + G+S L K I V S L Sbjct: 114 FGKWDRKKSAVTGMK--VLAHVEDD-----MQPVYHVAQGVSQAQLIKAIKVAFDSGALN 166 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 +L E + + L+ K EA ++H P KD A R+ ++EL Q+ L ++ Sbjct: 167 LLEESLPQVLMDKYRLMGRQEAVRVMHFP---KDLAEYKQALRRIKFEELFYFQMNLQVL 223 Query: 244 RKQFKKEI-GIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 + + K E G+ I+ E KI KI +PF TK+QE ++ +IL DM M R+LQGD Sbjct: 224 KAENKSETNGLAISYDEVKIKAKIA-TLPFPLTKAQERSLSEILADMKSGAHMNRLLQGD 282 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT++A +AM A AG Q+ +M P ILA+QHY+ +K +++ ++T M Sbjct: 283 VGSGKTVIASLAMYGAYTAGLQSALMVPTEILAEQHYQSLKGLFPELKVV--LLTSGMKM 340 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 A ++ AL +I G+A +I+GTH+L QD++ Y+KL LVI DEQHRFGV QR +K P Sbjct: 341 ADKKVALSKIESGEAQMIVGTHSLIQDAVIYHKLGLVITDEQHRFGVNQRRIFREKGDNP 400 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPRTL +T+ G++D+S I + PAGRK I T + ++D V+ +K L + Sbjct: 401 DVLMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKTIITRWVKHEQLDTVLTWIKSELEK 460 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKN 539 + Y+I P IEE + + ++ V L E F ++++A++HGRM + +K+ +M FK+ Sbjct: 461 DAQVYFISPLIEESESLDLKNAVALHQELTEFFGDSATVALMHGRMKNDEKDQIMQDFKD 520 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 ++L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG++ S C+L+ +P Sbjct: 521 KKSQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGDKQSYCVLVANPK 580 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 + R+ + T DGF++AEEDLK R GEI G +QSG+P+F +A ++LE A Sbjct: 581 -NDTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADTVEDYNILEEA 639 Query: 660 RKDAKHILTQDPD 672 R+ A I++ DP+ Sbjct: 640 RRVASQIVS-DPN 651 >gi|226224414|ref|YP_002758521.1| ATP-dependent DNA helicase recG [Listeria monocytogenes Clip81459] gi|225876876|emb|CAS05585.1| Putative ATP-dependent DNA helicase recG [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 682 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 242/680 (35%), Positives = 386/680 (56%), Gaps = 23/680 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P + +G+G++ + L ++ + DLL+ P + D R +SE++ E +T Sbjct: 8 PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 I G + ++ R+ K+ T G++ + F+ + LK+ G +T++GK Sbjct: 61 IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKISVGETVTISGKWD 119 Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEWI 189 K + ++ S++ +E VY L L +K A + + E I Sbjct: 120 KSRAQVTASKIKIGAVESEEE----LEGVYRLKGTLRNKTMQKYTRLAFNSYSQDIEEVI 175 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFK 248 +LL+K EA I+H P K+ E AR R+ Y+E L Q+ + RK + + Sbjct: 176 PSNLLEKYQLMDRLEAVRILHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKIERE 232 Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 K GI IN + + + + ++PF TK+Q+ + +I DM M R+LQGDVGSGKT+ Sbjct: 233 KSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKTV 292 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VA IAM AA ++G Q+ +M P ILA+QH + + Q I V ++T ++ RR+ L Sbjct: 293 VASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRRELL 352 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428 + +G ++IGTHAL QD + Y++L LVI DEQHRFGV QR L +K P VL MTA Sbjct: 353 AMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMTA 412 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488 TPIPRTL +T+ G++D+S I E PAGRK I+T + +D VI ++ + +G + Y I Sbjct: 413 TPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYII 472 Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLI 546 CP IEE ++ + ++ ++ FN L + + ++HG++ DKE +M F N L+ Sbjct: 473 CPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNNKKIDCLV 532 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 +TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ P ++ Sbjct: 533 STTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGKE 591 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKH 665 R+ ++ T DGF+++E DL+ R G+ G KQSG+P+F +A +HD +LEIAR+DA H Sbjct: 592 RMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQDAVH 650 Query: 666 ILTQDPDLTSVRGQSIRILL 685 ++ ++ L + + + LL Sbjct: 651 MIFEEDMLENKNYEKLVALL 670 >gi|253751213|ref|YP_003024354.1| ATP-dependent DNA helicase [Streptococcus suis SC84] gi|253753114|ref|YP_003026254.1| ATP-dependent DNA helicase [Streptococcus suis P1/7] gi|253754936|ref|YP_003028076.1| ATP-dependent DNA helicase [Streptococcus suis BM407] gi|251815502|emb|CAZ51080.1| ATP-dependent DNA helicase [Streptococcus suis SC84] gi|251817400|emb|CAZ55136.1| ATP-dependent DNA helicase [Streptococcus suis BM407] gi|251819359|emb|CAR44751.1| ATP-dependent DNA helicase [Streptococcus suis P1/7] gi|292557775|gb|ADE30776.1| ATP-dependent DNA helicase RecG [Streptococcus suis GZ1] gi|319757485|gb|ADV69427.1| ATP-dependent DNA helicase [Streptococcus suis JS14] Length = 672 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 241/676 (35%), Positives = 382/676 (56%), Gaps = 30/676 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L LS G+G K + KI + N N DLL Y+P + D + I ++ + Sbjct: 4 LCDELSVLPGIGPKSAEKFLKI-SIQNIN-----DLLTYYPFRYEDFESK-SIYDLQDGE 56 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 + G + ++ Q + ++ + GE+ L + L + G+ I V GK Sbjct: 57 KAVVVGEVVSPANVQYYGYKRNRLRFSMKQGEVVLAVSFFNQPYLADKIVLGQDIAVWGK 116 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186 K K + + I D ++ VY + G+S K I A+ + L +L Sbjct: 117 WDKAKASLTGMK---ILAQVSDE----LQPVYHVAQGISQVNLVKAIKTAIDQGYLHLLE 169 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + L ++ + EA +H P +++ A R+ ++EL Q+ L +++ Sbjct: 170 ENLPSVLRERYRLMNRREAVFAMHFPTNLEEYR---QALRRMKFEELFYFQLQLQMLKAN 226 Query: 247 FKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ I + +R +PF T +Q A+ +IL DM M R+LQGDVGSG Sbjct: 227 NRDILNGLKIAYDADRLAMQIRQLPFVLTDAQSGALAEILSDMKSYGHMNRLLQGDVGSG 286 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QA IM P ILA+QH+E +++ ++ + ++TG M A RR Sbjct: 287 KTVVAGLAMFAAVTAGMQAAIMVPTEILAEQHFESLRQLF--PELSIALLTGGMKAAERR 344 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 ALE I+ GQ II+GTHAL Q+S+ Y+KL LV+ DEQHRFGV+QR +K P VL+ Sbjct: 345 TALEAISSGQVDIIVGTHALIQESVTYHKLGLVVTDEQHRFGVKQRRLFREKGDNPDVLM 404 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T + ++ V++ L+ L G + Sbjct: 405 MTATPIPRTLAITAFGDMDVSIINQLPAGRKPIITRWVKHQQLPTVLDWLERELEVGAQV 464 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCK 543 Y+I P IEE + + ++ V+ + L HF + + +HG+M + +K+++M +FK Sbjct: 465 YFISPLIEESEALDLKNAVDLQSDLQAHFGEQVTVDLLHGKMKNDEKDAIMQAFKERKTN 524 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S +L+ +P +++ Sbjct: 525 ILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGHKQSYAVLVANPK-TES 583 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T DGF++AE DLK R GEI G +QSG+P+F +A +LE AR+ A Sbjct: 584 GKERMKIMTETTDGFILAEADLKMRGSGEIFGTRQSGLPEFQVANIIEDYPILEEARRVA 643 Query: 664 KHILT-----QDPDLT 674 I++ +DP+ + Sbjct: 644 SQIVSVENWQEDPNWS 659 >gi|309379638|emb|CBX21809.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 680 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 227/600 (37%), Positives = 341/600 (56%), Gaps = 7/600 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H + R+ + + DG+G + L F + G++I G+IK M Sbjct: 65 HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYAGHQKQTAVGKRIRAVGEIKHGFYGDEM 124 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP + L VY GL+ ++II AL P L + + LL + Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182 Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 P +AE+ ++H+P + + T PA +RL +DELLA Q+++ L R++ Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGSAAA 242 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + G + Q + R +PF+ T +QE+ + ++ DM+Q + M R+LQGDVGSGKT+VA ++ Sbjct: 243 LRGNGVLTQALRRALPFALTDAQENVLAEVQTDMAQTHPMHRLLQGDVGSGKTIVAALSA 302 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A+E+G Q +MAP ILA+QH+ K++ + I V + G++ + + +A ++A G Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 I +GTHALF D + ++ L L IVDEQHRFGV QRL L K H L+M+ATPIPRT Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I + P GR PIKT ++ R EV + +G++AYW+CP IEE Sbjct: 423 LAMSFFADLDVSVIDKLPPGRTPIKTRLVNNVRRAEVEGFVLNTCRKGRQAYWVCPLIEE 482 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ E L +I ++HGRM +K VM F +G +L+ATTVIEV Sbjct: 483 SETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGELNVLVATTVIEV 542 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +A++++IE+AE GLAQLHQLRGRVGRG S C+LL+ PL + + RL V+ Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA +DL R GE LG +QSG+P A+ E LLE AR+ A ++ Q+P++ Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 662 >gi|325287658|ref|YP_004263448.1| ATP-dependent DNA helicase RecG [Cellulophaga lytica DSM 7489] gi|324323112|gb|ADY30577.1| ATP-dependent DNA helicase RecG [Cellulophaga lytica DSM 7489] Length = 701 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 253/693 (36%), Positives = 387/693 (55%), Gaps = 36/693 (5%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 M P++L P++ +GVG + L + + DLL P+ ++D+ K Sbjct: 1 MNPNYLQ---TPIAYLKGVGPSRAQTLQSELGV-----YTYQDLLNLFPNRYLDKTQYYK 52 Query: 61 ISEISEERI-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 IS++ V + G I ++ + D TG++ L++F R + +K Sbjct: 53 ISQLQRNSAEVQVIGKIIHLKEVGQKRGKRLVATFVDDTGKMELVWF-RGQKWIKENIKL 111 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIF----HNSQDVN----FPLIEAVYS--LPTGLSVD 169 + GK M HP N V+ +P E + + + ++ Sbjct: 112 NVPYVIYGKTNWFNGTFSMPHPEMELLEDHKNGLKVSMQPIYPSSEKLTNKGITNKVTSK 171 Query: 170 LFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERL 228 L +++ ++ ++ LP ++ K+L ++A IH P+ +D + A+ RL Sbjct: 172 LLQQLFIDTKAQFAETLPVYLLKEL----KLIGKSDALLNIHFPKSQQDL---AKAQFRL 224 Query: 229 AYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQ 286 ++EL Q+ L+ + K +I G P N G N +PF T +Q+ +K+I Sbjct: 225 KFEELFYIQLQLIAKKMVRKNKIKGFPFNAVGTYFSDFYNNYLPFELTNAQKRVVKEIRA 284 Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346 D+ +M R+LQGDVGSGKT+VAL+ M A++ G QA +MAP ILA QHY I + Q Sbjct: 285 DLGSNAQMNRLLQGDVGSGKTIVALMTMLLALDNGFQACLMAPTEILATQHYNGITELLQ 344 Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 +I V ++TG++ ++ RR E + G+ HI+IGTHAL +D +QY L L I+DEQHRF Sbjct: 345 GLKIKVSLLTGSVKKSARRIIHEELESGELHILIGTHALLEDKVQYKNLGLAIIDEQHRF 404 Query: 407 GVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV-IIP 464 GV QR KL +K T PH+L+MTATPIPRTL ++ GD+DIS I E P GRKPIKTV Sbjct: 405 GVAQRAKLWRKNTMPPHILVMTATPIPRTLAMSLYGDLDISVIDELPPGRKPIKTVHRFD 464 Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAII 521 NR+ +V LK ++ G++ Y + P I+E + +++ +++ + S+ F + I+I+ Sbjct: 465 ANRL-KVFRFLKDEINIGRQVYVVYPLIKESEALDYKDLMDGYESIARDFPAPKYQISIV 523 Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581 HG+M DKE M F G ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRG Sbjct: 524 HGQMKPDDKEFEMQRFIKGETQIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRG 583 Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641 RVGRG + S CIL+ LS+++ TRL + T DGF IAE DLK R G+I+G +QSG+ Sbjct: 584 RVGRGADQSYCILMTGHKLSEDAKTRLETMVRTNDGFEIAEVDLKLRGPGDIMGTQQSGV 643 Query: 642 PKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 IA + +L+ AR A IL +DP L+ Sbjct: 644 LNLKIADIVKDNDILQTARHYAIKILKEDPSLS 676 >gi|313901534|ref|ZP_07834979.1| ATP-dependent DNA helicase RecG [Thermaerobacter subterraneus DSM 13965] gi|313468195|gb|EFR63664.1| ATP-dependent DNA helicase RecG [Thermaerobacter subterraneus DSM 13965] Length = 930 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 242/710 (34%), Positives = 378/710 (53%), Gaps = 55/710 (7%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL GVG++ + L+++ A DLL++ P + DR I+ + + T Sbjct: 218 PLGRLPGVGRRQAQRLARL-GLHTAG-----DLLWHLPRRYEDRSTWKPIARLVPGEVAT 271 Query: 72 ITGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 + G + + +R ++ ++DG+G + +FF + + + GR + ++G+++ Sbjct: 272 VQGVVVAAQRVPTRTRRVVVRVTISDGSGRLDAVFFNQPFRLQQ--LPPGRPVRLSGRVE 329 Query: 131 KLKNRIIMVHPHYIF---HNSQDVNFPLIEAVYSLPTGLSVDLFKKI---IVEALS-RLP 183 M HP + V+ I VY GL +++ +V AL+ R+P Sbjct: 330 AGYRGWQMDHPEVELLEGEGDEPVHTARIVPVYPATEGLHQRWLRQLAWQVVGALAGRVP 389 Query: 184 -VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 +LPE + + L + A+A IH P D E AR RLA++E Q+AL Sbjct: 390 EILPEELRRQL----NLVERAQALRDIHFP---PDAEAWQAARRRLAFEEWFVMQVALAR 442 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R Q ++E G +G + L +PF T +Q + +I DM M R++QGDV Sbjct: 443 VRSQQQQEPGRAHRPDGPRVARFLAALPFELTPAQRRVLDEIRADMEAPRPMRRLVQGDV 502 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKT++A AM AVE+G QA +MAP ILA+QH +++ I V ++ G+ P A Sbjct: 503 GSGKTVIAAWAMVKAVESGAQAALMAPTEILAEQHARRLQQLLAPAGIPVVLLVGSQPAA 562 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 R + L+ +A GQ +++GTHAL Q+++++ L LVI+DEQHRFGV+QR L K P Sbjct: 563 DRERVLQGLATGQWPVVVGTHALIQENVRFRDLGLVIIDEQHRFGVRQRALLQDKGRRPD 622 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 +L+MTATPIPRTL LT GD+D+S I + P GR+P++TV + + + + L ++ G Sbjct: 623 LLVMTATPIPRTLALTLYGDLDVSVIDQLPPGRQPVRTVWLRGRQRRKAYDLLAARVAAG 682 Query: 483 KKAYWICPQIEEKKES------------------NFRSVVERFNSLHEHFTS-------- 516 ++ Y +CP +++ ++ H+ T+ Sbjct: 683 EQGYVVCPLVDDPAAGPAGDGPGSGGQAAGGEGPAPGPGGAPEDAEHKAVTTWAEYVARR 742 Query: 517 ----SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 + I+HGRM +KE VM +F+ +L+ATTVIEVG+DV +A+++IIE A+ FG Sbjct: 743 YPRLRVGILHGRMPGPEKERVMRAFERRALDVLVATTVIEVGVDVPNATVMIIEGADRFG 802 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 LAQLHQLRGRVGRG + S CIL+ P S RL L ++ GF IAE DL+ R G+ Sbjct: 803 LAQLHQLRGRVGRGSKESLCILVAD-PASAEGRMRLEALCRSQSGFDIAEFDLQLRGPGD 861 Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682 G +Q G+P IA P LL +AR+ A+ +L +DP L + +S+R Sbjct: 862 FFGTRQHGLPALRIADPVKDAGLLRLAREAARRLLERDPGLDAPAHRSLR 911 >gi|253575788|ref|ZP_04853123.1| ATP-dependent DNA helicase RecG [Paenibacillus sp. oral taxon 786 str. D14] gi|251844831|gb|EES72844.1| ATP-dependent DNA helicase RecG [Paenibacillus sp. oral taxon 786 str. D14] Length = 683 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 229/639 (35%), Positives = 369/639 (57%), Gaps = 17/639 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99 DL+ Y+P + D R ++E+ + VT+ I Q R+ K++ +D Sbjct: 34 DLIEYYPFRYEDYRLR-SLTEVKDGDKVTVQAQIMGLPVLQRYGRKSRLTCKMIADDWM- 91 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159 T +F R LK+ GR+I +TGK ++++ + F + + ++ V Sbjct: 92 -FTATWFNR--HFLKDQLTTGREIILTGKWDMRRSQLTVSESE--FPDRGTLRSGSLQPV 146 Query: 160 YSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 YS+ ++ +K I +AL + ++PE + +LL+K A +H P +D Sbjct: 147 YSVGGKITQQWMRKTIGQALQQYGEMIPEILPPELLRKYGLMPRKTAILRLHQP---QDS 203 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277 E AR R+ Y+EL Q+ L R + + G+ V+ ++ +R++PF T +Q Sbjct: 204 EEGQQARRRMVYEELFLFQLKLQAYRAMNHERMDGVAHVVDNATIREFVRSLPFELTDAQ 263 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + +IL+DM M R+LQGDVGSGKT++A IA+ AAV++G Q M P ILA+QH Sbjct: 264 KKVELEILKDMRSPYCMNRLLQGDVGSGKTVIAAIALYAAVKSGHQGTFMVPTEILAEQH 323 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 + + + I V ++TG++ R+ L + G I++GTHAL Q+ + + L L Sbjct: 324 MRSLSRLFEPFGITVGLLTGSVTGRKRKDLLGSLQMGLTDIVVGTHALIQEDVFFRSLSL 383 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI DEQHRFGV QR L +K P VL MTATPIPRTL +T+ GD+D+S ++E+P GRKP Sbjct: 384 VITDEQHRFGVNQRSILRRKGFNPDVLTMTATPIPRTLAITAFGDMDVSTLSERPKGRKP 443 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516 I T + + +D V+ ++ +S+G++AY ICP IEE + + ++ ++ + S+ + F + Sbjct: 444 ITTYWVKHSMMDRVLGFIEREVSQGRQAYVICPLIEESDKLDVQNAIDLYVSMQQAFPNM 503 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 + ++HGRM+ +K+ VM +F +LL++TTV+EVG+DV +A+++I+ +A+ FGL+QL Sbjct: 504 KVGLLHGRMTAAEKDEVMRAFYENEVQLLVSTTVVEVGVDVPNATLMIVMDADRFGLSQL 563 Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636 HQLRGRVGRGE S C+L+ P S+ R+ V+ +T+DGF +A DL+ R G+ G Sbjct: 564 HQLRGRVGRGEHASYCVLIADPK-SEVGQERMKVMTDTDDGFEVARRDLELRGPGDFFGT 622 Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 KQSG+P F +A ++LE AR DA ++ + TS Sbjct: 623 KQSGVPDFRVADMVSDYAVLEAARDDAARLVAGEAFWTS 661 >gi|322412623|gb|EFY03531.1| ATP-dependent DNA helicase RecG [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 671 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 247/668 (36%), Positives = 380/668 (56%), Gaps = 26/668 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L AP++ +G+G K + K+ + DLL Y+P + D + + + E+ Sbjct: 3 LTAPIAHLKGLGPKSAEKFQKL------GIYQIEDLLLYYPFRYEDFKSKSVLELLDGEK 56 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 V ITG + + Q + ++ GE+ + + L++ G ++ V GK Sbjct: 57 SV-ITGTLVTPPNVQYYGFKRNRLTFKIKQGEVVIGVSFFNQPYLQDKLTLGNEVAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186 + K + + + +D ++ VY + G+S K I A L L Sbjct: 116 WDQKKTALTGMK--LLMTVEED-----LQPVYHVAQGVSQTALIKAIKAAFDSGALDELK 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E I LL+K A +H P+ D++ A R+ ++ELL Q+ L ++++ Sbjct: 169 ENIPNRLLEKYRLMPRQAAVYAMHFPKTLTDYK---QALRRIKFEELLYFQLRLQVLKQA 225 Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + E G+ I ++ + + +PF T++QE ++++IL+DM M R+LQGDVGSG Sbjct: 226 NRSEDSGLAIALDQEKINHQIAALPFPLTQAQERSLQEILRDMRSGAHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT++A +AM AA AG Q+ +M P ILA+QHY+ + K N I I+T M +R Sbjct: 286 KTVIASLAMYAAYTAGLQSALMVPTEILAEQHYDSLIKLFPNLSI--AILTSGMKAPEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 L IA G +I+GTHAL QD++QY+KL LVI DEQHRFGV+QR +K P VL+ Sbjct: 344 TTLAAIADGSVDMIVGTHALIQDAVQYHKLGLVITDEQHRFGVKQRRIFREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ G++D+S I E PAGRKPI T + ++D V+ +K L +G +A Sbjct: 404 MTATPIPRTLAITAYGEMDVSIIDELPAGRKPIVTRWVKHQQLDTVLAWMKTELEQGAQA 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ V L +F +S IA++HG+M +KE++M +FK Sbjct: 464 YVISPLIEESEALDLKNAVALEVELKAYFKASARIALMHGKMKADEKEAIMQAFKAQEID 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 LL++TTVIEVG++V +ASI++I +A+ FGL+QLHQLRGRVGRG + S IL+ +P +++ Sbjct: 524 LLVSTTVIEVGVNVPNASIMVIMDADRFGLSQLHQLRGRVGRGYKQSYAILVANPK-TES 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R++++ T DGF++AE DLK R GEI G +QSG+P+F A ++LE ARK A Sbjct: 583 GEERMTIMTTTNDGFVLAEADLKMRGAGEIFGTRQSGLPEFKTADIVEDYAILEEARKVA 642 Query: 664 KHILTQDP 671 I T +P Sbjct: 643 TMI-TSEP 649 >gi|46908043|ref|YP_014432.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes serotype 4b str. F2365] gi|254826147|ref|ZP_05231148.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL J1-194] gi|254933283|ref|ZP_05266642.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes HPB2262] gi|46881313|gb|AAT04609.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes serotype 4b str. F2365] gi|293584843|gb|EFF96875.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes HPB2262] gi|293595387|gb|EFG03148.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL J1-194] gi|328473539|gb|EGF44376.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes 220] gi|332312252|gb|EGJ25347.1| ATP-dependent DNA helicase recG [Listeria monocytogenes str. Scott A] Length = 682 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 243/680 (35%), Positives = 386/680 (56%), Gaps = 23/680 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P + +G+G++ + L ++ + DLL+ P + D R +SE++ E +T Sbjct: 8 PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 I G + ++ R+ K+ T G++ + F+ + LK+ G +T++GK Sbjct: 61 IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKISVGETVTISGKWD 119 Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWI 189 K + ++ S++ +E VY L L +K A S + E I Sbjct: 120 KSRAQVTASKIKIGAVESEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEVI 175 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFK 248 +LL+K EA I+H P K+ E AR R+ Y+E L Q+ + RK + + Sbjct: 176 PSNLLEKYQLMDRLEAVRILHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKIERE 232 Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 K GI IN + + + + ++PF TK+Q+ + +I DM M R+LQGDVGSGKT+ Sbjct: 233 KSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKTV 292 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VA IAM AA ++G Q+ +M P ILA+QH + + Q I V ++T ++ RR+ L Sbjct: 293 VASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRRELL 352 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428 + +G ++IGTHAL QD + Y++L LVI DEQHRFGV QR L +K P VL MTA Sbjct: 353 AMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMTA 412 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488 TPIPRTL +T+ G++D+S I E PAGRK I+T + +D VI ++ + +G + Y I Sbjct: 413 TPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYII 472 Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLI 546 CP IEE ++ + ++ ++ FN L + + ++HG++ DKE +M F N L+ Sbjct: 473 CPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNNKKIDCLV 532 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 +TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ P ++ Sbjct: 533 STTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGKE 591 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKH 665 R+ ++ T DGF+++E DL+ R G+ G KQSG+P+F +A +HD +LEIAR+DA H Sbjct: 592 RMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQDAVH 650 Query: 666 ILTQDPDLTSVRGQSIRILL 685 ++ ++ L + + + LL Sbjct: 651 MIFEEDMLENKNYEKLVALL 670 >gi|238022292|ref|ZP_04602718.1| hypothetical protein GCWU000324_02199 [Kingella oralis ATCC 51147] gi|237866906|gb|EEP67948.1| hypothetical protein GCWU000324_02199 [Kingella oralis ATCC 51147] Length = 681 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 234/638 (36%), Positives = 356/638 (55%), Gaps = 10/638 (1%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DL + P + D + I+ + G + Q + R+ + D G + Sbjct: 29 DLALHLPLRYEDETHITPIAAAPIGETCQVEGEVVLQE-VQFKPRKQLIARIRDNAGGLL 87 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162 L F + +G+++ G+IK+ M+HP ++ L VY Sbjct: 88 NLRFIHFYPSQQQQLAKGQRVRALGEIKQGYYGAEMIHPKIKSPEKSELAQTLT-PVYPT 146 Query: 163 PTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS 222 GL+ +K I AL L L E + + +L++ + P++A++ ++HNP + + S Sbjct: 147 TNGLTQPTLRKAIAAALQHLD-LREILPESVLRQYNLPTLADSLRLLHNPPPSINLAQIS 205 Query: 223 ----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 PA +RL +DELLA Q+++ L +++ + P+ G + ++ +PF T++Q+ Sbjct: 206 NGALPAWQRLKFDELLAQQLSMRLAKQKRRSGSLKPLIGNGSLTDALIAQLPFGLTRAQQ 265 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-AGG-QAVIMAPIGILAQQ 336 +I D++Q + M R+LQGDVGSGKT+VA +A A+E AGG QA +MAP ILA+Q Sbjct: 266 RVFNEIRADLAQPHPMHRLLQGDVGSGKTIVAALAALVALEDAGGFQAAVMAPTEILAEQ 325 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 HY K++ + I V ++G++ + + +A IA G+ + IGTHALFQD + ++ L Sbjct: 326 HYIKFKQWLEPLGISVAWLSGSLKKRDKDQARAAIADGRIRLAIGTHALFQDDVAFHNLG 385 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 LVIVDEQHRFGV QRL L K H L+M+ATPIPRTL ++ D+D+S I E P R Sbjct: 386 LVIVDEQHRFGVAQRLALKNKGQDVHQLMMSATPIPRTLAMSFFADLDVSTIDELPPNRT 445 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 PIKT ++ R EV + +G++AYW+CP IEE ++ E L Sbjct: 446 PIKTKLVNNVRRAEVEGFVLNTCQKGQQAYWVCPLIEESDSLQLKAATETLAELQAALPQ 505 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 +I ++HGRM +K +M F G+ +L+ATTVIEVG+DV +AS+++IE+AE GLAQ Sbjct: 506 LNIGLVHGRMKPAEKAEIMAQFVAGSLNVLVATTVIEVGVDVPNASLMVIEHAERMGLAQ 565 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG S+C+LL+ PL + RL V+ DGF IA +DL+ R G+ LG Sbjct: 566 LHQLRGRVGRGAAASTCVLLFAEPLGQVGKQRLKVIYENTDGFEIARQDLEIRGAGDFLG 625 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 ++QSG A E LLE AR+ A ++ Q P++ Sbjct: 626 VRQSGAMMLRFANLEQDLELLEHARQLAPLLIEQQPEI 663 >gi|325526988|gb|EGD04435.1| ATP-dependent DNA helicase RecG [Burkholderia sp. TJI49] Length = 564 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 220/539 (40%), Positives = 320/539 (59%), Gaps = 22/539 (4%) Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215 VY G+S +K I AL R P+ LP IE+ L+ PS+A+A I+H+PR Sbjct: 10 VYPSTAGVSQAYLRKAIENALERTPLPELLPPEIERAYLKPLDVPSLADAVRILHHPRVD 69 Query: 216 KD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-----EGKIAQKIL 266 D + + PA R+ ++ELLA Q++L ++ + + + ++ Sbjct: 70 SDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAAPAMPRRAASDADALTTRLY 129 Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 +PF T +Q + +I D++ + M R+LQGDVGSGKT+VA +A A A++AG QA + Sbjct: 130 AALPFRLTGAQSRVVDEIAHDLTLAHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQAAL 189 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 MAP ILA+QH ++ + + + V + G++ +R A+E A G A ++IGTHA+ Sbjct: 190 MAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAAIEAAALGTAQLVIGTHAII 249 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLVL 437 QDS+++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRTL + Sbjct: 250 QDSVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAQGFQPHQLMMSATPIPRTLAM 309 Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497 T D+++S I E P GR P+ T ++ R DEVI R++ G++ YW+CP IEE + Sbjct: 310 TYYADLEVSTIDELPPGRTPVLTRLVGDARRDEVIARVREAALTGRQVYWVCPLIEESET 369 Query: 498 SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556 ++ VE + +L + ++HGR+S DK +VMD+F +LL+ATTVIEVG+D Sbjct: 370 LQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMDAFTRNEVQLLVATTVIEVGVD 429 Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616 V +AS+++IE+AE FGLAQLHQLRGRVGRG S C+LLY PLS RL ++ T D Sbjct: 430 VPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYTGPLSIAGRERLKTMRETTD 489 Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 GF IA DL+ R GE LG +QSG A E L+E AR+ A ++ P++ + Sbjct: 490 GFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLIEPAREAAARLIAGYPEVVT 548 >gi|298492967|ref|YP_003723144.1| ATP-dependent DNA helicase RecG ['Nostoc azollae' 0708] gi|298234885|gb|ADI66021.1| ATP-dependent DNA helicase RecG ['Nostoc azollae' 0708] Length = 827 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 245/696 (35%), Positives = 388/696 (55%), Gaps = 35/696 (5%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCG---NANETRFI-----DLLFYHPSSFIDRHYR 58 P+ A +S R +G K LS I G N R DLLFY+P ID + Sbjct: 116 TPIVAEVS--RRLGPKIEQKLSDIAEIGIRKAENLARLDLLTVRDLLFYYPRDHIDYARQ 173 Query: 59 PKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKT----- 110 I E+ VTI + + + F K + IL L D TG+I + FY Sbjct: 174 VNIQELQGGETVTIIATVKRCNCFTSPKNKKLSILELMLKDNTGQIKVARFYAGARFSSR 233 Query: 111 ---EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPL----IEAVYSL 162 E LK + I G +K K + + +P + N D L + +Y+L Sbjct: 234 AWQESLKRRYAVDSVIAACGLVKASKYGLTLDNPELEVLANPGDAINSLTIGRVVPIYAL 293 Query: 163 PTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS 222 G+ + ++ ++ AL L + + L QK + + IH P +D + Sbjct: 294 TEGVMANTVRQAVIAALPAAVNLKDPLPGGLRQKYGLMELKDGIANIHFP---EDSDTLK 350 Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIP--INVEGKIAQKILRNIPFSPTKSQESA 280 AR RL +DE Q+ LL R++ KEI + +GK+ ++ +PF TK+Q+ Sbjct: 351 TARRRLVFDEFFYLQLGLL-QRQRKAKEIQTSAVLAPKGKLLEQFNEILPFKLTKAQQRV 409 Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340 I DIL D+ + M R++QGDVGSGKT+VA++A+ AA+++G QA +MAP +LA+QHY Sbjct: 410 INDILNDLQKPTPMNRLIQGDVGSGKTVVAVVAILAAIQSGYQAALMAPTEVLAEQHYRK 469 Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400 + + + VE++TG+ RR+ ++ G+ +++GTHAL QD + + +L LV++ Sbjct: 470 LVSWFNLLHLPVELLTGSTKTPKRREIHSQLETGELPLLVGTHALIQDKVNFQQLGLVVI 529 Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460 DEQHRFGV+QR KL QK PHVL MTATPIPRTL LT GD+D+S+I E P GR+ I+T Sbjct: 530 DEQHRFGVEQRAKLRQKGEQPHVLTMTATPIPRTLALTVHGDLDVSQIDELPPGRQQIQT 589 Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--I 518 ++ + + + ++ + +G++ Y + P +EE ++ + RS V+ L E + Sbjct: 590 TLLIGQQRHQAYDLMRREVVQGRQVYVVLPLVEESEKLDLRSAVDEHKKLQESVFPDFQV 649 Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578 ++HGRM+ +K+ + F++ ++L++TTV+EVG+DV +A++I+IE+AE FGL+QLHQ Sbjct: 650 GLLHGRMTSAEKDEAITKFRDNETQILVSTTVVEVGVDVPNATLILIEHAERFGLSQLHQ 709 Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638 LRGRVGRG S C+L+ S ++ RL VL+ ++DGF I+E D++ R GE++G +Q Sbjct: 710 LRGRVGRGAAQSYCLLM-SSSRSADAQQRLKVLEQSQDGFFISEMDMRFRGPGEVMGTRQ 768 Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 SG+ F +A + +L +AR+ A+ ++ D L Sbjct: 769 SGIADFTLASLVEDEDVLLLARQAAEKVIDMDVSLA 804 >gi|323353284|ref|ZP_08087817.1| DNA helicase RecG [Streptococcus sanguinis VMC66] gi|322121230|gb|EFX92993.1| DNA helicase RecG [Streptococcus sanguinis VMC66] Length = 671 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 239/665 (35%), Positives = 379/665 (56%), Gaps = 29/665 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL+ GVG K + +K+ ET DLL Y P + D + + ++ + Sbjct: 3 LHQPLTVLPGVGPKSAEKFAKL-----GLET-LQDLLLYFPFRYEDFKSK-NVLDLEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + ++ Q + ++ GE+ L + L + G I V GK Sbjct: 56 KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184 K K + + + +D ++ VY L G+S V L K + L L Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDLL-- 166 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 L E + + LL++ S EA +H P+ D++ A R+ ++EL Q+ L +++ Sbjct: 167 LEENLPQPLLERYQLVSRVEAVRAMHFPKDLADYK---QALRRVKFEELFYFQMQLQVLK 223 Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 ++ K G+ I+ + + +++PF T +QE ++ +ILQD+ M R+LQGDVG Sbjct: 224 RETKAVSNGLKIDWQLDAVAEKKQSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVG 283 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA +AM A AG Q+ +M P ILA+QH++ + + ++ + ++TG M A Sbjct: 284 SGKTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAE 341 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L I GQ +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR L +K P V Sbjct: 342 RRETLAAIEKGQVDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDV 401 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T + +++ V++ LK L +G Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLKKELHKGA 461 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541 + Y+I P IEE + + ++ + L +F +A++HG+M +KE++M FK G Sbjct: 462 QVYFISPLIEESEALDLKNAIALEEELTAYFGQQVQVALLHGKMKSEEKEAIMQDFKEGR 521 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S +L+ +P + Sbjct: 522 TDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-T 580 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 ++ R+ ++ T DGFL+AEEDLK R GEI G +QSG+P+F +A +LE ARK Sbjct: 581 ESGKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640 Query: 662 DAKHI 666 A I Sbjct: 641 VASQI 645 >gi|261401307|ref|ZP_05987432.1| ATP-dependent DNA helicase RecG [Neisseria lactamica ATCC 23970] gi|269208687|gb|EEZ75142.1| ATP-dependent DNA helicase RecG [Neisseria lactamica ATCC 23970] Length = 680 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 227/600 (37%), Positives = 339/600 (56%), Gaps = 7/600 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H + R+ + + DG+G + L F + G++I G+IK M Sbjct: 65 HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYAGHQKQMAVGKRIRAVGEIKHGFYGDEM 124 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP S + L +Y GL+ ++II AL P L + + LL + Sbjct: 125 IHPKIRDAESSGLAESLT-PIYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLE 182 Query: 199 FPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 P +AE+ ++H P + S PA +RL +DELLA Q+++ L R++ Sbjct: 183 LPHLAESLRLLHAPPPSFTIHQLSDGALPAWQRLKFDELLAQQLSMRLARQKRIGGSAAA 242 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + G + Q + R +PF+ T +QE+ + ++ DM+Q + M R+LQGDVGSGKT+VA ++ Sbjct: 243 LRGNGVLTQALRRALPFALTDAQENVLAEVQTDMAQTHPMHRLLQGDVGSGKTIVAALSA 302 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A+E+G Q +MAP ILA+QH+ K++ + I V + G++ + + +A ++A G Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 I +GTHALF D + ++ L L IVDEQHRFGV QRL L K H L+M+ATPIPRT Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I E P GR PIKT ++ R EV + +G++AYW+CP IEE Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNTCRKGRQAYWVCPLIEE 482 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ E L +I ++HGRM +K VM F +G +L+ATTVIEV Sbjct: 483 SETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGELNVLVATTVIEV 542 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +A++++IE+AE GLAQLHQLRGRVGRG S C+LL+ L + + RL V+ Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAESLGELAKARLKVIYE 602 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA +DL R GE LG +QSG+P A+ E LLE AR+ A ++ Q+P++ Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 662 >gi|254852719|ref|ZP_05242067.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL R2-503] gi|300763876|ref|ZP_07073873.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL N1-017] gi|258606040|gb|EEW18648.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL R2-503] gi|300515612|gb|EFK42662.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL N1-017] Length = 682 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 243/680 (35%), Positives = 386/680 (56%), Gaps = 23/680 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P + +G+G++ + L ++ + DLL+ P + D R +SE++ E +T Sbjct: 8 PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 I G + ++ R+ K+ T G++ + F+ + LK+ G +T++GK Sbjct: 61 IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKIRVGETVTISGKWD 119 Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWI 189 K + ++ S++ +E VY L L +K A S + E I Sbjct: 120 KSRAQVTASKIKIGAVESEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEVI 175 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFK 248 +LL+K EA I+H P K+ E AR R+ Y+E L Q+ + RK + + Sbjct: 176 PSNLLEKYQLMDRLEAVRILHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKIERE 232 Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 K GI IN + + + + ++PF TK+Q+ + +I DM M R+LQGDVGSGKT+ Sbjct: 233 KSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKTV 292 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VA IAM AA ++G Q+ +M P ILA+QH + + Q I V ++T ++ RR+ L Sbjct: 293 VASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRRELL 352 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428 + +G ++IGTHAL QD + Y++L LVI DEQHRFGV QR L +K P VL MTA Sbjct: 353 AMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMTA 412 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488 TPIPRTL +T+ G++D+S I E PAGRK I+T + +D VI ++ + +G + Y I Sbjct: 413 TPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYII 472 Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLI 546 CP IEE ++ + ++ ++ FN L + + ++HG++ DKE +M F N L+ Sbjct: 473 CPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNNKKIDCLV 532 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 +TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ P ++ Sbjct: 533 STTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGKE 591 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKH 665 R+ ++ T DGF+++E DL+ R G+ G KQSG+P+F +A +HD +LEIAR+DA H Sbjct: 592 RMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQDAVH 650 Query: 666 ILTQDPDLTSVRGQSIRILL 685 ++ ++ L + + + LL Sbjct: 651 MIFEEDMLENKNYEKLVALL 670 >gi|78188306|ref|YP_378644.1| ATP-dependent DNA helicase RecG [Chlorobium chlorochromatii CaD3] gi|78170505|gb|ABB27601.1| ATP-dependent DNA helicase RecG [Chlorobium chlorochromatii CaD3] Length = 706 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 234/648 (36%), Positives = 357/648 (55%), Gaps = 34/648 (5%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75 +GVG + K + G DLL Y+P ++DR ++ + + + T+ G Sbjct: 10 LKGVGSR------KAVVLGEVGIVTVDDLLAYYPRRYLDRRSIKRVRALVDGELTTVVGT 63 Query: 76 ISQHSSFQ-LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134 I + Q + +K L+DG+G + L +F R F +G + V GK+ N Sbjct: 64 IVRTQLEQPTSGKARFKAWLDDGSGLLELTWF-RSVRYFSRFFTKGESLAVHGKVSFFGN 122 Query: 135 RIIMVHPHYIFHNSQDV--------NFPLIEAVYSLP----------TGLSVDLFKKIIV 176 + M HP Y ++ +F L +P GL+ + +I Sbjct: 123 QAQMQHPDYDRLTPENAVGGEKGSDDFALFNTGAIIPLYHTTEAMKQAGLASRQLRVLIK 182 Query: 177 EALSRLPVLP-EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235 AL +P E + ++++ EA IH P + E AR RL + EL Sbjct: 183 RALEEVPFREQENLPLSIIRQYGLIPQWEAEREIHLPSSPEKLE---QARYRLKWTELFY 239 Query: 236 GQIALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 Q+ L R ++ + G++ +K+ ++P+ T+ Q+ A++DI +D+ + M Sbjct: 240 AQLLFALRRSTLRRNRAAVRFTHSGELTRKLHESLPYQLTEGQKQAVRDIYRDLRSGSPM 299 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R+LQGDVG+GKT+VA+ AMA AV+ G QA++MAP ILA QH +K++ I + + Sbjct: 300 NRLLQGDVGAGKTMVAMFAMALAVDNGLQAMVMAPTEILAVQHALVMKRFFAPLGIELGL 359 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 +TG + RR LE++ G +++GTHAL + +QY LVI+DEQHRFGV QR L Sbjct: 360 LTGKQGKKERRATLEKLRTGDMQLVVGTHALLEPDVQYANPGLVIIDEQHRFGVLQRKAL 419 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 +KA PHVLLMTATPIPRTL + GD+D+S I +KP GR+PIKTV+ V Sbjct: 420 QEKAANPHVLLMTATPIPRTLSMGMFGDLDLSIIRDKPVGRQPIKTVLKKEQDKPSVYHF 479 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKES 532 ++ ++ G++ Y I P +EE ++ + ++ VE + L SI +IHG+MS +KE Sbjct: 480 VREQIAAGRQGYIIYPLVEESEKMDLKAAVESYEELSTAIFPDLSIGLIHGQMSPDEKEH 539 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 VM+ F+ +L+ TTVIEVG+DV +A+++IIE+AE FGLAQLHQLRGRVGRGE S+C Sbjct: 540 VMERFRQREFSILVGTTVIEVGVDVPNATVMIIEHAERFGLAQLHQLRGRVGRGEHPSTC 599 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 ILL ++ ++ RL + +T DGF+++E D K R G +LG +QSG Sbjct: 600 ILLT-AKMTADARERLLAMVSTNDGFVLSELDAKIRGVGNLLGKEQSG 646 >gi|222099455|ref|YP_002534023.1| ATP-dependent DNA helicase [Thermotoga neapolitana DSM 4359] gi|221571845|gb|ACM22657.1| ATP-dependent DNA helicase [Thermotoga neapolitana DSM 4359] Length = 750 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 238/646 (36%), Positives = 368/646 (56%), Gaps = 31/646 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLL + P + DR K++E+ R VT G IS + Q +L+DG + Sbjct: 111 DLLEFFPRDYEDRRKVLKLNELIPGRKVTTQGKISSVEKKKFQNMNILVAVLSDGLMHVL 170 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH---YIFHNSQDVN------- 152 L +F + + + G+++ VTG +K ++P+ Y HN++ + Sbjct: 171 LKWFNQDFLLTQLKQLVGKEVFVTGTVK--------LNPYTGQYEIHNAEVLPKEREIIR 222 Query: 153 --FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNII 209 FP +Y L +G+S ++I E + L L E + + +++K++ SI +A+ + Sbjct: 223 RIFP----IYRLTSGISQKQMRRIFEENIPSLCCSLEETLPERIIKKRNLLSIKDAYYGM 278 Query: 210 HNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269 H P+ E ARERLAY+EL Q+A +R++ +K GIP +EG++A++ ++++ Sbjct: 279 HFPKTLHHLE---KARERLAYEELFTLQLAFQKVRREREKHGGIPKKIEGRLAEEFIKSL 335 Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T +Q+ A ++I +DM + M R+LQGDVGSGKT+VA +A+ EAG QA M P Sbjct: 336 PFQLTGAQKRAHEEIRKDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQAAFMVP 395 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILA QHY + I V ++ G + + K + +GQ ++IGTHAL Q+ Sbjct: 396 TSILAIQHYRRTMESFSRFDIRVALLIGATSPSEKEKIKSGLKNGQIDLVIGTHALIQED 455 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L LVI+DEQHRFGV+QR L K L+M+ATPIPR++ L GD+D++ I Sbjct: 456 VHFKNLGLVIIDEQHRFGVRQREALMNKGRMVDTLVMSATPIPRSMALAFYGDLDVTVID 515 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 E P GRK ++T+++ ++R++EV E ++ + +G +A+ + P IEE + + +S VE + Sbjct: 516 EMPPGRKEVQTILVSMDRVNEVYEFVRQEVMKGGQAFIVYPLIEESDKLSAKSAVEMYEY 575 Query: 510 L-HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 L E F + ++HG++S +K+ VM F G +L++TTVIEVGIDV A++++IEN Sbjct: 576 LSREVFPEFRVGLMHGKLSQEEKDRVMMEFAEGRYDILVSTTVIEVGIDVPRANVMVIEN 635 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627 E FGLAQLHQLRGRVGRG + + C L+ + + + RL DGF IAE DLK Sbjct: 636 PERFGLAQLHQLRGRVGRGGQEAYCFLVVG-DVGEEAMERLRFFTLNTDGFKIAEYDLKT 694 Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 R GE G+KQ GM F +A LLE AR+D + I DL Sbjct: 695 RGPGEFFGLKQHGMSGFKVANLYKDLKLLEWAREDVREIDVDKIDL 740 >gi|294787729|ref|ZP_06752973.1| ATP-dependent DNA helicase RecG [Simonsiella muelleri ATCC 29453] gi|294484022|gb|EFG31705.1| ATP-dependent DNA helicase RecG [Simonsiella muelleri ATCC 29453] Length = 680 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 237/639 (37%), Positives = 359/639 (56%), Gaps = 9/639 (1%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DL + P + D I+ I + G + H Q + R+ + D +G Sbjct: 29 DLALHLPLRYEDETQIIPIAAAPIGEICQVEGVVL-HQEIQFKPRKQLIARIKDDSGACL 87 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162 L F + +G + G+IK+ M+HP + + L +Y Sbjct: 88 NLRFIHFYPNHQKQLAQGATVRALGEIKRGFYGDEMIHPKLKSPENNKLAQSLT-PIYPT 146 Query: 163 PTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS 222 GL+ +K + AL + L E + + LL+ PS+AE+ +HNP + + Sbjct: 147 TNGLNQPTLRKAVQAALDAVD-LTEVLPEKLLKSLKLPSLAESLRTLHNPPPELSMQTLA 205 Query: 223 ----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 PA +RL +DELLA Q+++ L R++ K P+ G +++K+L N+PF T +Q+ Sbjct: 206 DGAFPAWQRLKFDELLAQQLSMRLARQRRKSGNAKPLIGNGVLSKKLLANLPFRLTHAQQ 265 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-QAVIMAPIGILAQQH 337 +I D++ M R+LQGDVGSGKT+VA ++ A+E G Q IMAP ILA+QH Sbjct: 266 RVCDEIRADLANHVPMHRLLQGDVGSGKTIVAALSALVALECEGVQVAIMAPTEILAEQH 325 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 + K++ + I V ++G++ + + +A +A+G+ +++GTHALFQD + + L L Sbjct: 326 FIKFKQWFETLGIRVAWLSGSLKKKAKDEAKAALANGEIRVVVGTHALFQDDVLFDNLGL 385 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VIVDEQHRFGV QRL L K H L+M+ATPIPRTL ++ L D+D+S I E P R P Sbjct: 386 VIVDEQHRFGVAQRLALKNKGQDVHQLMMSATPIPRTLAMSFLADLDVSSIDELPPNRTP 445 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516 IKT ++ R ++V + +G++AYW+CP IEE + ++ + L H S Sbjct: 446 IKTKLVNQLRRNDVEGFVLSTCQKGQQAYWVCPLIEESETLQLQTATDTLAELQNHLPSL 505 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 +I ++HGRM +K +VM F +G+ +L+ATTVIEVG+DV +AS+++IE+AE GLAQL Sbjct: 506 NIGLVHGRMKAAEKAAVMSEFISGSLNVLVATTVIEVGVDVPNASLMVIEHAERMGLAQL 565 Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636 HQLRGRVGRG S+C+LL+ PL + S RL V+ DGF IA +DL+ R GE LG Sbjct: 566 HQLRGRVGRGAVASTCVLLFAEPLGQVSKARLKVIHEHTDGFEIARQDLEIRGPGEFLGA 625 Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 +QSG P A + LLE AR+ A ++ +PD+ + Sbjct: 626 RQSGAPMLRFADLQTDMVLLEQARQAAADLVAHEPDVVA 664 >gi|319764638|ref|YP_004128575.1| ATP-dependent DNA helicase recg [Alicycliphilus denitrificans BC] gi|317119199|gb|ADV01688.1| ATP-dependent DNA helicase RecG [Alicycliphilus denitrificans BC] Length = 705 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 238/668 (35%), Positives = 359/668 (53%), Gaps = 37/668 (5%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL + P + D I E V + G ++ S Q++ RR + L DGT Sbjct: 28 TRDIDLALHLPLRYEDETRITPIRSAREGETVQVEGTVTA-SEIQMRPRRQLVVTLEDGT 86 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 G L FF K + G ++ G+++ M+HP F ++ + Sbjct: 87 GSCELRFFSFYPSHQKAMAV-GERLRARGEVRGGFWGRQMLHP--AFRKAEGALPAALTP 143 Query: 159 VYSLPTGLSVDLFKKIIVEALSR--LP-VLPEWIEKDLLQKKSFPSIAEAFNI------I 209 VY L ++ + AL+R LP LP +E L + S + + + + Sbjct: 144 VYPTVAQLPQAYLRRAVASALARVDLPETLPPGLEPPLARFDSENGLHRPWGLRESLLFL 203 Query: 210 HNPRKAKDF------EWTSPARERLAYDELLAGQIALLLM---RKQFKKEIGIPINVEGK 260 HNP A D + + PA +RL +ELLA Q++ L+ R + + P Sbjct: 204 HNP--APDVALATLQDHSHPAWQRLKAEELLAQQLSQLVSKRERARLRAPRLSPAPGAQA 261 Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320 + +++L +PFS T +Q ++I +D+++ M R+LQGDVGSGKT+VA +A A ++A Sbjct: 262 LHEQLLAALPFSLTAAQRRVGEEIARDLARAVPMHRLLQGDVGSGKTVVAALAAARCMDA 321 Query: 321 GGQAVIMAPIGILAQQHYE----FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376 G Q +MAP ILA+QH+ ++ V + G + R LERIA G A Sbjct: 322 GWQCALMAPTEILAEQHFAKLIGWLAPLLAARGQQVAWLAGGQKKKERAAMLERIASGGA 381 Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK----ATAPHVLLMTATPIP 432 +++GTHA+ Q+ +++ L L ++DEQHRFGV QRL L QK PH+L+M+ATPIP Sbjct: 382 ALVVGTHAVIQEQVRFRNLALAVIDEQHRFGVAQRLALRQKLQHDGMEPHLLMMSATPIP 441 Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492 RTL ++ D+D+S I E P GR PI T +I +R D+V+ER+ ++ G++ YW+CP I Sbjct: 442 RTLAMSYYADLDVSTIDELPPGRTPIVTKLIADSRKDQVVERIGAQVAAGRQVYWVCPLI 501 Query: 493 EEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551 EE + + + L E ++ ++H RM +K++VM+ FK+G +L++TTVI Sbjct: 502 EESEALDLSNATATHADLSEALPGVTVGLLHSRMPSAEKKAVMEEFKSGRTGVLVSTTVI 561 Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP----LSKNSYTR 607 EVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG S+C+LLY L + + R Sbjct: 562 EVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYSTGDSGRLGETARDR 621 Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 L + T DGF IA DL+ R GE LG +QSG A +LLE AR A +L Sbjct: 622 LKAMAETTDGFEIARRDLEIRGPGEFLGARQSGDALLRFADLATDTALLEWARAAAPQML 681 Query: 668 TQDPDLTS 675 + L + Sbjct: 682 DRHAALAA 689 >gi|116628420|ref|YP_821039.1| ATP-dependent DNA helicase RecG [Streptococcus thermophilus LMD-9] gi|116101697|gb|ABJ66843.1| ATP-dependent DNA helicase RecG [Streptococcus thermophilus LMD-9] Length = 672 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 247/673 (36%), Positives = 389/673 (57%), Gaps = 34/673 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEISEE 67 L +P++ +G G K + +K+ + DLL Y P + D ++ K I E+ + Sbjct: 4 LDSPIADLKGFGPKSAEKFTKL------DLHTVGDLLLYFPFRYED--FKSKSIFELMDG 55 Query: 68 RIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 ITG + ++ Q KR + G I + FF + L + F G ++ + Sbjct: 56 EKAVITGTVVTPANVQYYGFKRNRLSFKIKQGEAVIAINFFNQP--YLVDKFEVGAEVAI 113 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS-VDLFKKIIVEALS-RLP 183 GK + K+ + + + H D ++ VY + G+S L K I V S L Sbjct: 114 FGKWDRKKSAVTGMK--VLAHVEDD-----MQPVYHVAQGVSQAQLIKAIKVAFDSGALN 166 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 +L E + + L+ K EA ++H P KD A R+ ++EL Q+ L ++ Sbjct: 167 LLEESLPQVLMDKYRLMGRQEAVRVMHFP---KDLAEYKQALRRIKFEELFYFQMNLQVL 223 Query: 244 RKQFKKEI-GIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 + + K E G+ I+ E KI KI +PF TK+QE ++ +IL DM M R+LQGD Sbjct: 224 KAENKSETNGLAISYDEVKIKAKIA-TLPFPLTKAQERSLSEILADMKSGAHMNRLLQGD 282 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT++A +AM A AG Q+ +M P ILA+QHY+ +K +++ ++T M Sbjct: 283 VGSGKTVIASLAMYGAYTAGLQSALMVPTEILAEQHYQSLKGLFPELKVV--LLTSGMKM 340 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 A ++ AL +I G+A +I+GTH+L QD++ Y+KL LVI DEQHRFGV QR +K P Sbjct: 341 ADKKVALSKIESGEAQMIVGTHSLIQDAVIYHKLGLVITDEQHRFGVNQRRIFREKGDNP 400 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPRTL +T+ G++D+S I + PAGRK I T + ++D V+ +K L + Sbjct: 401 DVLMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKTIITRWVKHEQLDTVLTWIKSELEK 460 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKN 539 + Y+I P IEE + + ++ V L E F ++++A++HGRM + +K+ +M FK+ Sbjct: 461 DAQVYFISPLIEESESLDLKNAVALHQELTEFFGDSATVALMHGRMKNDEKDQIMQDFKD 520 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 ++L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG++ S C+L+ +P Sbjct: 521 KKSQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGDKQSYCVLVANPK 580 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 + R+ + T DGF++AEEDLK R GEI G +QSG+P+F +A ++LE A Sbjct: 581 -NDTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEA 639 Query: 660 RKDAKHILTQDPD 672 R+ A I++ DP+ Sbjct: 640 RRVASQIVS-DPN 651 >gi|167765566|ref|ZP_02437630.1| hypothetical protein CLOSS21_00060 [Clostridium sp. SS2/1] gi|167712751|gb|EDS23330.1| hypothetical protein CLOSS21_00060 [Clostridium sp. SS2/1] gi|291559032|emb|CBL37832.1| ATP-dependent DNA helicase RecG [butyrate-producing bacterium SSC/2] Length = 676 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 230/667 (34%), Positives = 367/667 (55%), Gaps = 19/667 (2%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFID-LLFYHPSSFIDRHYRPKISEISEERIVTITG 74 +G+G+K + ++ R +D L+ +P ++ ++EI + V+I Sbjct: 10 LKGIGEKSATAFGRL-------GIRDVDSLITMYPKYYLTYEDPKDVNEIEIGQRVSIFV 62 Query: 75 YISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133 I+ Q KR + D TG I L+++ LK +GR TG Sbjct: 63 RINSEVHIQYAKRMKIVTCTAKDHTGTIMLVWY--NMPYLKKQLHQGRDYIFTGTPIYKN 120 Query: 134 NRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193 RI M HP + ++ VY L +GL+ L K + + + +PE++ +++ Sbjct: 121 GRITMEHPEIFTKEDYEAKQETLQPVYPLTSGLTNKLVSKAMAQTKDYIFHIPEYLPQNI 180 Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIG 252 L + +A IH P E A++RL +DE A+ ++ + KE G Sbjct: 181 LDQYQPMEYHQAIWNIHFPESK---EQLIKAKKRLIFDEFFIFIAAMHMITSGEDLKEEG 237 Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312 I V K A+++++N+P+ T +Q+ A+ ++ +DM+ M R++QGDVGSGKT++A+I Sbjct: 238 YKIGV-CKEAKELVKNLPYELTTAQKRALNEMAKDMASGKVMNRLVQGDVGSGKTILAVI 296 Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372 + +AG Q V+MAP +LA QHYE + ++ I + ++TG+ +R+ ++I Sbjct: 297 LLLMCAKAGYQGVLMAPTEVLAAQHYESFTELLESYDIKIALLTGSTKAKEKRETYQKIK 356 Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432 G+ I+IGTHA+ QD ++Y KL LVI DEQHRFGV+QR L+ K PHVL+M+ATPIP Sbjct: 357 DGEVDIVIGTHAVIQDKVEYNKLALVITDEQHRFGVRQRESLSLKGEKPHVLVMSATPIP 416 Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492 RTL + GD+D+S I E PA R PIK ++ + ++ +S+G++ Y ICP + Sbjct: 417 RTLAIILYGDLDVSIIDELPAERLPIKNCVVNTSYRPTAYRFIEKQVSQGRQVYIICPMV 476 Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTV 550 EE + +V++ L F S+ I +HG+M DK+ VMD F G +L++TTV Sbjct: 477 EESETMEGENVIQYAQMLRSQFAPSVRISYLHGKMKAADKQKVMDDFSEGKIDVLVSTTV 536 Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610 +EVG++V +A+++++ENAE FGLAQLHQLRGRVGRG S CI + K + RL V Sbjct: 537 VEVGVNVPNATVMMVENAERFGLAQLHQLRGRVGRGGYQSYCIFMTSSK-KKETMQRLEV 595 Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670 L + DGF IA EDLK R G+ G++QSGM F++A + +++ A K + Sbjct: 596 LNKSNDGFYIANEDLKLRGPGDFFGVRQSGMMDFVLADIYTNADIMKQAADAVKQLEESG 655 Query: 671 PDLTSVR 677 D ++++ Sbjct: 656 FDFSNLK 662 >gi|212550469|ref|YP_002308786.1| ATP-dependent DNA helicase RecG [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548707|dbj|BAG83375.1| ATP-dependent DNA helicase RecG [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 707 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 249/670 (37%), Positives = 385/670 (57%), Gaps = 27/670 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERI--VTITGYISQHSSFQLQKRRPYKILLNDGTGE 100 DLL+Y P + DR KISEI + + + G I ++ K R + +DGTG Sbjct: 33 DLLYYFPYRYTDRSKIHKISEIDGRSMPFIQLKGKIFRYEYLGEGKSRRLSAVFDDGTGV 92 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK---------NRIIMVHPHYIFHNSQDV 151 I L++F R + ++ GR+ + GK + RI ++HP N Sbjct: 93 IELIWF-RSLTWITKMYKLGREYILFGKPSTFRLSTPSGSSLERISIIHPELEEENKFYE 151 Query: 152 NFPLIEAVYSLP-----TGLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEA 205 I+ YS L K++I+E L + L E + ++++ + S+ EA Sbjct: 152 GVIGIQGEYSTTEKMKKVSLHSRTIKQMIIEILENIKEPLSETLSREIINEYKLISLDEA 211 Query: 206 FNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQK 264 IH P K+ D A+ RL ++EL Q+++L K +K I G G+ Sbjct: 212 IRNIHFP-KSNDL--LQEAQYRLKFEELFYLQLSILSAAKHREKHIDGFRFKEIGENFYF 268 Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324 + N+PF T +Q+ + +I ++M+ +M R+LQGDVGSGKTL+AL+++ A + G Q Sbjct: 269 LKNNLPFELTTAQKRVVNEIWKNMNTGKQMNRLLQGDVGSGKTLIALLSILLATDNGFQG 328 Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384 IM P +LA QHYE I + + I V ++TG+ R + L ++ G+ I+IGTHA Sbjct: 329 AIMVPTEVLAIQHYETISRMLNGSAIKVSLLTGSTKNKLREEMLPKVKSGEIQILIGTHA 388 Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVLLMTATPIPRTLVLTSLGDI 443 L +DS+++ L LV+VDEQHRFGV QR KL K + PHVL+MTATPIPRTL +T GD+ Sbjct: 389 LIEDSVEFNNLGLVVVDEQHRFGVTQRAKLWNKNSNPPHVLVMTATPIPRTLAMTIYGDL 448 Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503 D+S I E P GRKP+ T + D++ E ++ + +GK+ Y + P IEE ++ + ++ Sbjct: 449 DVSIIDELPPGRKPVDTYHRYDEKRDKIYEYVRKEIQKGKQVYIVYPLIEENEKIDLTNL 508 Query: 504 VERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 + F ++ + F +I ++HG+M +K+ M F +G ++++ATTVIEVGIDV +AS+ Sbjct: 509 QDGFQAVSKVFPEYNICMVHGQMKPEEKKQEMQKFLSGEAQIMVATTVIEVGIDVRNASV 568 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622 +II+NAE FGL+QLHQLRGRVGR E + CIL+ + LS+++ R++++ N +GF+IAE Sbjct: 569 MIIKNAERFGLSQLHQLRGRVGRSTEQAVCILMTNHELSEDARKRITIMTNFNNGFIIAE 628 Query: 623 EDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681 EDLK R G + GIKQSG L IA+ +L+ R A+ IL DP+L + Q+I Sbjct: 629 EDLKLRGPGSLNGIKQSGFDSNLKIARLSQDGDILDYTRNLARRILDDDPNLE--KPQNI 686 Query: 682 RILLYLYQYN 691 + +L ++N Sbjct: 687 LLKQHLNKWN 696 >gi|55821697|ref|YP_140139.1| ATP-dependent DNA helicase RecG [Streptococcus thermophilus LMG 18311] gi|55737682|gb|AAV61324.1| ATP-dependent DNA helicase [Streptococcus thermophilus LMG 18311] Length = 672 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 247/673 (36%), Positives = 389/673 (57%), Gaps = 34/673 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEISEE 67 L +P++ +G G K + +K+ + DLL Y P + D ++ K I E+ + Sbjct: 4 LDSPIADLKGFGPKSAEKFTKL------DLHTVGDLLLYFPFRYED--FKSKSIFELMDG 55 Query: 68 RIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 ITG + ++ Q KR + G I + FF + L + F G ++ + Sbjct: 56 EKAVITGTVVTPANVQYYGFKRNRLSFKIKQGEAVIAINFFNQP--YLVDKFEVGAEVAI 113 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS-VDLFKKIIVEALS-RLP 183 GK + K+ + + + H D ++ VY + G+S L K I V S L Sbjct: 114 FGKWDRKKSAVTGMK--VLAHVEDD-----MQPVYHVAQGVSQAQLIKAIKVAFDSGALN 166 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 +L E + + L+ K EA ++H P KD A R+ ++EL Q+ L ++ Sbjct: 167 LLEESLPQVLMDKYRLMGRQEAVRVMHFP---KDLAEYKQALRRIKFEELFYFQMNLQVL 223 Query: 244 RKQFKKEI-GIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 + + K E G+ I+ E KI KI +PF TK+QE ++ +IL DM M R+LQGD Sbjct: 224 KAENKSETNGLAISYDEVKIKAKIA-TLPFPLTKAQERSLSEILADMKSGAHMNRLLQGD 282 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT++A +AM A AG Q+ +M P ILA+QHY+ +K +++ ++T M Sbjct: 283 VGSGKTVIASLAMYGAYTAGLQSALMVPTEILAEQHYQSLKGLFPELKVV--LLTSGMKM 340 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 A ++ AL +I G+A +I+GTH+L QD++ Y+KL LVI DEQHRFGV QR +K P Sbjct: 341 ADKKVALSKIESGEAQMIVGTHSLIQDAVIYHKLGLVITDEQHRFGVNQRRIFREKGDNP 400 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPRTL +T+ G++D+S I + PAGRK I T + ++D V+ +K L + Sbjct: 401 DVLMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKTIITRWVKHEQLDTVLTWIKSELEK 460 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKN 539 + Y+I P IEE + + ++ V L E F ++++A++HGRM + +K+ +M FK+ Sbjct: 461 DAQVYFISPLIEESESLDLKNAVALHQELTEFFGDSATVALMHGRMKNDEKDQIMQDFKD 520 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 ++L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG++ S C+L+ +P Sbjct: 521 KKSQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGDKQSYCVLVANPK 580 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 + R+ + T DGF++AEEDLK R GEI G +QSG+P+F +A ++LE A Sbjct: 581 -NDTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEA 639 Query: 660 RKDAKHILTQDPD 672 R+ A I++ DP+ Sbjct: 640 RRVASQIVS-DPN 651 >gi|293365912|ref|ZP_06612615.1| DNA helicase RecG [Streptococcus oralis ATCC 35037] gi|307702316|ref|ZP_07639274.1| ATP-dependent DNA helicase RecG [Streptococcus oralis ATCC 35037] gi|291315590|gb|EFE56040.1| DNA helicase RecG [Streptococcus oralis ATCC 35037] gi|307624119|gb|EFO03098.1| ATP-dependent DNA helicase RecG [Streptococcus oralis ATCC 35037] Length = 671 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 243/674 (36%), Positives = 382/674 (56%), Gaps = 30/674 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL K S +A +H P KD A R+ ++EL Q+ L ++ + Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQSLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ +N + + N+PFS T++QE ++++IL DM + M R+LQGDVGSG Sbjct: 226 NRVQGSGLVLNWSQEKVTVVKENLPFSLTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QA +M P ILA+QH+E ++ + ++ ++TG++ A +R Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPDLKLA--LLTGSLKAAEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LE IA G+A +IIGTHAL QD + Y L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVDYACLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T I ++ +V+ L+ + +G + Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQV 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + +A++HG+M +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQEFKERKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + + Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLIANPK-TDS 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642 Query: 664 KHILT-----QDPD 672 +I + +DP+ Sbjct: 643 SYISSMEGWKEDPE 656 >gi|305667019|ref|YP_003863306.1| ATP-dependent DNA helicase RecG [Maribacter sp. HTCC2170] gi|88709254|gb|EAR01488.1| ATP-dependent DNA helicase RecG [Maribacter sp. HTCC2170] Length = 701 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 257/689 (37%), Positives = 388/689 (56%), Gaps = 39/689 (5%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 N L P++ +GVG + L G + + DLL P+ +ID+ KI ++ Sbjct: 4 NYLQTPITYLKGVGPNRAQTLQ-----GELGISTYQDLLNLFPNRYIDKTQYYKIGQLQR 58 Query: 67 ERI-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 V I G I + + + +K + D TGE+ L++F + + +N+ + + Sbjct: 59 SNADVQIKGKIIRIKTVEQKKGKRLVATFIDETGEMELVWFRGQKWIRENLKLNTPYV-I 117 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIEAVYSLPTGL-SVDLFKKIIVEALSRLP 183 GK + M HP + L++ VY L + + ++I + L +L Sbjct: 118 FGKCNWYSGKFSMPHPEMELLTEHEQGLKVLMQPVYPSTEKLGNSGITNRVINKLLQQLF 177 Query: 184 V-----LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 V E + LL S +EA IH P K+ E+ + A+ RL ++EL Q+ Sbjct: 178 VETKGKFMETLSDGLLHDLKLISKSEALFNIHFP---KNQEFLAKAQFRLKFEELFYIQL 234 Query: 239 ALL---LMRKQFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRM 294 L+ ++RKQ K G + G++ + +N +PF T +Q+ IK+I DM +M Sbjct: 235 QLISKNMLRKQKIK--GFNFDQVGELFNEFFKNHLPFELTTAQKRVIKEIRADMGSNAQM 292 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R+LQGDVGSGKT+VAL+ M A++ G QA +MAP ILA QH+ IK+ Q+ + + + Sbjct: 293 NRLLQGDVGSGKTIVALMTMLLAIDNGYQACLMAPTEILANQHFNGIKEQLQDIGVNIAL 352 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 +TG++ ++ R E++ +G+ HI+IGTHAL +D ++Y L L IVDEQHRFGV QR KL Sbjct: 353 LTGSIKKSARTIIHEQLENGELHILIGTHALLEDKVKYKNLGLAIVDEQHRFGVAQRSKL 412 Query: 415 TQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 K PH+L+MTATPIPRTL ++ GD+DIS I E P GRK IKTV +R D Sbjct: 413 WHKNEVPPHILVMTATPIPRTLAMSLYGDLDISVIDELPPGRKAIKTV----HRYDS--N 466 Query: 474 RLKVV------LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGR 524 RLKV + +G++ Y + P I+E + +++ +++ + S+ F I+I+HG+ Sbjct: 467 RLKVFGFIKDEIKKGRQIYVVYPLIQESEALDYKDLMDGYESIARDFPLPDYQISIVHGK 526 Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584 M DK+ M+ F G ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRVG Sbjct: 527 MKPADKDYEMERFVKGETQIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVG 586 Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644 RG + S CIL+ LS + TRL + T DGF IAE DLK R G+I+G +QSG+ Sbjct: 587 RGADQSYCILMTSFKLSSEAKTRLETMVRTNDGFEIAEVDLKLRGPGDIMGTQQSGVLNL 646 Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPDL 673 IA + +L+ AR A IL +DP L Sbjct: 647 KIADIVKDNDILKTARWYAMKILKEDPSL 675 >gi|331269673|ref|YP_004396165.1| ATP-dependent DNA helicase RecG [Clostridium botulinum BKT015925] gi|329126223|gb|AEB76168.1| ATP-dependent DNA helicase RecG [Clostridium botulinum BKT015925] Length = 673 Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust. Identities = 241/659 (36%), Positives = 379/659 (57%), Gaps = 30/659 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 +++ +G+G K L+K CG + +DLL Y P + HY IS + +E V I Sbjct: 7 VASLKGIGPKTKELLNK---CG---IYKILDLLLYFPRDYEKIHYCNDISNLKDEDKVII 60 Query: 73 TGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 + + KR ++ E +F +K +KN F + ++GK+K Sbjct: 61 KAKVKEIKKDIYVKRNMVISTVIFTKNDLEFQGKWFNQK--YIKNKFKVNEEYIISGKVK 118 Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190 K ++ +++P+ + + + I YSL L+ + F K I LS + ++ E I Sbjct: 119 MDKYKVSIINPNILEDTEKLIG---ITPKYSLKGSLTNNFFNKTINYILSNITIV-ENIP 174 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 K++L K + S+ ++ IH+P + ++ + A +RL + EL + LL++ KQ+KK Sbjct: 175 KNILDKYNLVSLDKSIRNIHHPTREEELLY---AMKRLKFQELFTYSLKLLML-KQYKKS 230 Query: 251 IGIPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309 GI + ++ KIL+ N+PF+ T +Q +++IL D + M R++QGDVGSGKT+V Sbjct: 231 KGIAFKISEEL--KILKENLPFTLTDAQNKVVREILIDEKRDRPMNRLVQGDVGSGKTIV 288 Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369 +LIA+ V+ G Q V+MAP ILA QHYE +N + +E++TG+ + K Sbjct: 289 SLIALFNIVKNGYQGVLMAPTEILANQHYEQAINLFENFNVKIELLTGSTKKKDIIKG-- 346 Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429 ++ G+ ++IGTHAL +D +++ L +V+ DEQHRFGV+QR KL K VL+MTAT Sbjct: 347 KLKSGEVDMVIGTHALLEDDVEFNNLGMVVTDEQHRFGVKQRSKLYNKNNNIDVLVMTAT 406 Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489 PIPRTL L+ GD+DIS I + P GRK I T + N + V + +G + Y +C Sbjct: 407 PIPRTLALSLYGDLDISTIDKLPPGRKKIDTFSVKENERNRVYNFALKKIKQGAQVYIVC 466 Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 P +EE +E N +SV + + L + + ++ + I+HG+M K+ +M+ FK G ++LI+ Sbjct: 467 PLVEENEELNVKSVEKLYMELKDKYFNNVEVEILHGKMPSKSKDEIMERFKMGKTEVLIS 526 Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT- 606 TTVIEVG++V +A+++IIE+AE FGL+QLHQLRGRVGRG++ S CIL+ + S N T Sbjct: 527 TTVIEVGVNVPNATLMIIESAERFGLSQLHQLRGRVGRGDKKSYCILITN---SSNDITK 583 Query: 607 -RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 R+ ++ + DGF IAEEDLK R GEI G Q G F+I+ + A K+AK Sbjct: 584 QRMDIITKSNDGFFIAEEDLKLRGSGEIFGFNQHGENGFIISDVINDYGIFRNANKEAK 642 >gi|72161050|ref|YP_288707.1| ATP-dependent DNA helicase RecG [Thermobifida fusca YX] gi|71914782|gb|AAZ54684.1| ATP-dependent DNA helicase RecG [Thermobifida fusca YX] Length = 733 Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust. Identities = 240/720 (33%), Positives = 383/720 (53%), Gaps = 75/720 (10%) Query: 15 TFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITG 74 + R VG + + L+ + DLL ++P + R + + E VT+ Sbjct: 7 SLRVVGDRTAKVLASALGLHTVG-----DLLRHYPRRYDRRGELTDLDGLVEGEQVTVLA 61 Query: 75 YISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 + + +++RR ++++ DG G ++LLFF+R ++ GR+ GK+ Sbjct: 62 EVLTCTVRPMRQRRGSILEVVVTDGRGRLSLLFFHR-VGWHRDRLLPGRRGLFAGKVSVY 120 Query: 133 KNRIIMVHPHYIFHNSQDVN--------------FPLIEAVYSLPTGLSVDLFKKIIVEA 178 + R + HP Y S D +P E + S K + Sbjct: 121 RGRRQLAHPEYELFESDDAIQERARTYADTLIPIYPATEKITSWK-------IAKAVATV 173 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L L LP+ + DL + S++EA+ +IH P KD++ AR+RL +DE Q+ Sbjct: 174 LDILGDLPDPLPADLRARHGLVSLSEAYRLIHTP---KDWDDVRAARKRLKWDEAFVIQV 230 Query: 239 ALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 AL R+ +++ P + G I N+PF+ T Q + I D++ + M R+ Sbjct: 231 ALAQRRRTAQRQPAQPRPRISGGILDAFDANLPFTLTDGQREVGEVISADLASDHPMHRL 290 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY----EFIKKYTQNTQII-- 351 LQGDVG+GKTLVAL AM V+AGGQA ++AP +LAQQH+ E + + Q+ Sbjct: 291 LQGDVGAGKTLVALRAMLQVVDAGGQAALLAPTEVLAQQHHRSITEMLGPLARAGQLDGA 350 Query: 352 -----VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 V ++TG++ A RR+AL A G+A I+IGTHAL Q+ + + L LV++DEQHRF Sbjct: 351 EQATRVALLTGSLGAAARREALLDAASGRAGIVIGTHALLQEQVTFADLGLVVIDEQHRF 410 Query: 407 GVQQRLKLTQKATA--PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464 GV+QR L K+T PHVL+MTATPIPRT+ +T GD+D+ + + PAGR PI T ++P Sbjct: 411 GVEQRDALRDKSTRGRPHVLVMTATPIPRTVAMTVYGDLDVVALRQLPAGRSPIATHVVP 470 Query: 465 INR----IDEVIERLKVVLSEGKKAYWICPQI---EEKKESNFR---------------- 501 + ER++ +++G++AY +CP+I E E N R Sbjct: 471 SRDKPHYLARAWERIREEVAQGRQAYIVCPRIGGEAEDPEENGRLFAEPDGGETAGRRAP 530 Query: 502 -SVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +VV+ + + + + A +HGR++ +K+ VM +F G +L+ATTV+EVG++V Sbjct: 531 LAVVDLLAEVEQGPLAGLRLAALHGRLAPDEKDKVMRAFAAGEIDVLVATTVVEVGVNVP 590 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618 +A++++I +A+ FG++QLHQLRGRVGRG C+L+ + RL + +T DGF Sbjct: 591 NATVMMIMDADRFGVSQLHQLRGRVGRGSLPGLCLLVTEAEEGSPARRRLDAVASTTDGF 650 Query: 619 LIAEEDLKQRKEGEILGIKQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 ++ DL+QR+EG+ILG+ QSG + L E + L+ AR +A ++ DP+L+ Sbjct: 651 ALSRLDLEQRREGDILGVAQSGRSGTLRLLTITHEQDEELIGQARAEATALVDADPELSD 710 >gi|327441097|dbj|BAK17462.1| RecG-like helicase [Solibacillus silvestris StLB046] Length = 679 Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust. Identities = 247/665 (37%), Positives = 378/665 (56%), Gaps = 29/665 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEISEERIV 70 P+S +G+GK+ + L KI ET DL++ P D +R K ++E V Sbjct: 5 PVSHLKGIGKETAENLMKI-----GIET-IHDLIWTFPYRHED--FRLKDLTETPHNERV 56 Query: 71 TITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGK 128 TI + + + ++ G I ++FF + L+ G ITVTGK Sbjct: 57 TIEARVESEPTVLFLGKNKSRLQFTALAGRHLIKVVFFNQN--YLRQKISTGGIITVTGK 114 Query: 129 IKKLKNRIIMVHPHYIFH-NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLP 186 + R ++V F ++ V+F E VYSL + F+K + +AL + LP Sbjct: 115 WDR--GRQVIVGSSVTFGPKTEQVDF---EPVYSLKGNIQQKRFRKYMRQALDTVKEELP 169 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + L + +I EA +H P A + AR R Y+ELL Q+ + +RK Sbjct: 170 ETLPNYLRESYQLVNIQEALEGVHFPLNA---DHAKQARRRFVYEELLQFQLRIQALRKA 226 Query: 247 FKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 K+ E GI + + + + + +P+ T +Q+ + +I +DM RM R+LQGDVGSG Sbjct: 227 NKENEKGISVRFDLEKLKAFITTLPYELTGAQKRVVNEICKDMLLPQRMNRLLQGDVGSG 286 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA I + AAV AG Q +MAP ILA+QH E + + + + +++G+ RR Sbjct: 287 KTVVAAIGLYAAVTAGYQGALMAPTEILAEQHAENLHMWFDPIGVKIALLSGSTKTKARR 346 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + L ++A G+ I+IGTHAL Q +++ KL VI DEQHRFGV+QR L +K P VL Sbjct: 347 ELLAQLAAGEIDILIGTHALIQPDVEFKKLGFVITDEQHRFGVEQRRVLREKGENPDVLF 406 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +++ V+ R+ L G++A Sbjct: 407 MTATPIPRTLAITAFGEMDVSIIDELPAGRKEIETHWLKKEQLNSVLMRMTQELEAGRQA 466 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ VE + L +F + I ++HGR+ +K++VM +F +G Sbjct: 467 YVIAPLIEESDKLDVQNAVEAYEQLKAYFGTRFEIGLMHGRLHSDEKDAVMRAFSDGKIH 526 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTV+EVG++V +A+ + I +AE FGLAQLHQLRGRVGRGE S C+L+ P + Sbjct: 527 VLVSTTVVEVGVNVPNATFMTIYDAERFGLAQLHQLRGRVGRGEHQSYCVLIADPKTDEG 586 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKD 662 R+ + T DGF +AE+DL+ R G+ G +QSG+P+F +A +HD LE AR+D Sbjct: 587 K-ERMMSMTETNDGFRLAEKDLELRGSGDFFGKRQSGLPEFKLADL-VHDYRALETARQD 644 Query: 663 AKHIL 667 A+ +L Sbjct: 645 AEKML 649 >gi|296331162|ref|ZP_06873636.1| ATP-dependent DNA helicase RecG [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674318|ref|YP_003865990.1| branch migrating ATP-dependent DNA helicase involved in DNA recombination and repair [Bacillus subtilis subsp. spizizenii str. W23] gi|296151806|gb|EFG92681.1| ATP-dependent DNA helicase RecG [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412562|gb|ADM37681.1| branch migrating ATP-dependent DNA helicase involved in DNA recombination and repair [Bacillus subtilis subsp. spizizenii str. W23] Length = 682 Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust. Identities = 234/637 (36%), Positives = 368/637 (57%), Gaps = 23/637 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSF----QLQKRRPYKILLNDGT 98 DLL Y P + D R + E+ + VT+ G + S + + R +++L+ G Sbjct: 33 DLLNYFPYRYDDYELR-DLEEVKHDERVTVEGKVHSEPSLTYYGKKRNRLTFRVLV--GH 89 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 IT + F R LK G +TV+GK K + I + N IE Sbjct: 90 YLITAVCFNRP--YLKKKLSLGSVVTVSGKWDKHRQTISVQE----LKNGPHQEDKSIEP 143 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 VYS+ ++V + ++ I +AL++ LP+ + + L + P +A +H P Sbjct: 144 VYSVKENVTVKMMRRFIQQALNQYADSLPDPLPEKLKTRYKLPDYHQALKAMHQPETR-- 201 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKS 276 E AR R Y+E L Q+ + RK +++ GI + + ++++PF T + Sbjct: 202 -EALKLARRRFVYEEFLLFQLKMQAFRKAEREQTQGIRQRFSNEELMRFIKSLPFPLTNA 260 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q +++I DMS RM R+LQGDVGSGKT VA IA+ AA+ +G Q +M P ILA+Q Sbjct: 261 QSRVLREITADMSSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQ 320 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 H + + + + V ++T ++ R++ LER+ G+ I++GTHAL QD +++ L Sbjct: 321 HADSLVSLFEKWDVSVALLTSSVKGKRRKELLERLEAGEIDILVGTHALIQDEVEFKALS 380 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 LVI DEQHRFGV+QR KL K P VL MTATPIPRTL +T G++D+S I E PAGRK Sbjct: 381 LVITDEQHRFGVEQRKKLRNKGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRK 440 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 I+T + + +D ++ ++ L +G++AY ICP IEE + + ++ ++ +N L + F Sbjct: 441 QIETYWVKHDMLDRILAFVEKELKQGRQAYIICPLIEESDKLDVQNAIDVYNMLSDIFRG 500 Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 ++ ++HG++ +K+ VM F C++L++TTV+EVG++V +A+I++I +A+ FGL+ Sbjct: 501 KWNVGLMHGKLHSDEKDQVMREFSANQCQILVSTTVVEVGVNVPNATIMVIYDADRFGLS 560 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRGE S CIL+ P S+ R+ ++ T DGF ++E+DL+ R G+ Sbjct: 561 QLHQLRGRVGRGEHQSFCILMADPK-SETGKERMRIMSETNDGFELSEKDLELRGPGDFF 619 Query: 635 GIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQD 670 G KQSGMP+F +A +HD LE AR+DA +++ D Sbjct: 620 GKKQSGMPEFKVADM-VHDYRALETARQDAANLVASD 655 >gi|157413185|ref|YP_001484051.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str. MIT 9215] gi|157387760|gb|ABV50465.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str. MIT 9215] Length = 817 Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust. Identities = 236/650 (36%), Positives = 362/650 (55%), Gaps = 25/650 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ---HSSFQLQKRRPYKILLNDGTG 99 DL+ Y P +++D R KI + + + T I + H S + +++D T Sbjct: 150 DLINYFPRTYLDYTNRVKIINLKPDNLYTCIANIKRFYIHKSKKNSNLSIMNFVVSDETS 209 Query: 100 EITLLFFYRKTEMLKNVFFE--------GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV 151 I + F+ FF G K+ ++GK+K + V P + Sbjct: 210 SIKVTKFFLGRRFRSYSFFSSQKSLYTPGTKLAISGKVKLTEYGKTFVDPQIEILKGIND 269 Query: 152 NFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI 208 NF I +YSL LS F K++ + L PE + K L S S E+ Sbjct: 270 NFNYSGKILPLYSLGEALSNMSFIKLMKKVLIYAKQYPEILNKKQLDSLSLLSKGESLIN 329 Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLL-MRKQFKKEIGIPINVEGKIAQKILR 267 IH P + +++RL +DEL QI LL RK K I + + + ++ L Sbjct: 330 IHFPLTQ---QALLESKKRLVFDELFLLQIKFLLRKRKTNKNVISQQLPQKKSLLKEFLN 386 Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF TKSQE+ + +I +D+S M R+LQGDVGSGKT++A+ ++ +E Q + Sbjct: 387 TFPFELTKSQENVLNEIKKDLSNALPMSRLLQGDVGSGKTIIAIASLLLVIEKNQQGAFL 446 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LA+QHY+ + KY + VE++TGN PQ R++ + +G I++GTHALF+ Sbjct: 447 VPTEVLAEQHYKNLLKYLDPLLVSVELLTGNTPQKKRKEIFSNLNNGLVDILVGTHALFE 506 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D + + L +V++DEQHRFGV QR +L K ++L MTATPIPRTL L+ GD+D+S+ Sbjct: 507 DKVIFNALGMVVIDEQHRFGVSQRNRLLNKGENTNLLSMTATPIPRTLALSIYGDLDVSQ 566 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 ITE P GR PI T II + + ++ + + +++G++AY I P IE+ ++ N S + F Sbjct: 567 ITELPPGRVPITTKIISEDDLSKLFKIVDDEITKGRQAYVILPLIEDSEKMNLSSAKKIF 626 Query: 508 NSLHEH--FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 L E F + ++HG+++ +K V++SF +L++TTVIEVGIDV +A+I+II Sbjct: 627 KYLSEEVFFNKKVGLLHGKLNSQEKNEVINSFIENEINILVSTTVIEVGIDVPNATIMII 686 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEE 623 N++ FGL+QLHQLRGRVGRG S C L+ KN RL VL+ + DGF IAE+ Sbjct: 687 YNSDRFGLSQLHQLRGRVGRGSTKSFCYLVTS---DKNGLENKRLCVLQKSNDGFYIAEK 743 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DL+ R G+ILG +QSG+P F++ + L++ AR++A +++ DPDL Sbjct: 744 DLELRGPGQILGYRQSGLPDFVLDNLPNNKFLIDKAREEAIKVVSDDPDL 793 >gi|299821767|ref|ZP_07053655.1| DNA helicase RecG [Listeria grayi DSM 20601] gi|299817432|gb|EFI84668.1| DNA helicase RecG [Listeria grayi DSM 20601] Length = 682 Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust. Identities = 242/679 (35%), Positives = 381/679 (56%), Gaps = 28/679 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEISEERIV 70 PLS +GVG++ + ++ A +T DLL+ P + D YR K + ++++E + Sbjct: 8 PLSALKGVGEETAKHFHEL-----AIDT-IADLLWNFPHRYED--YRLKDLMDVADEERI 59 Query: 71 TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 TI G + ++ R+ K+ E + + LKN G +TV+GK Sbjct: 60 TIQGEVLTEATIAFYGRKKSKLSFRISDHEQVVKVDFFNQPYLKNNIVVGETVTVSGKWN 119 Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS-RLPVLPEWI 189 K + +I + +E VY L + +K + +AL L + E I Sbjct: 120 KARAQITGSK----LKKGELQEEQELEGVYRLKGTIRNKTIQKYVKQALDLYLQDIEEII 175 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFK 248 L+K EA +H P+ + AR R Y+E L Q+ + RK + + Sbjct: 176 PPKWLEKYQLIGRQEALATMHFPKSEDALK---QARRRFVYEEFLLFQLKMQFFRKLERE 232 Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 K GI I+ + + + + +PF T +Q+ + +I DM M R+LQGDVGSGKT+ Sbjct: 233 KSGGISIDYDVEKLRHYIEGLPFPLTSAQKRVVNEICGDMKSHFHMNRLLQGDVGSGKTV 292 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VA IAM AAV++G QA +M P ILA+QH + + Q I V ++T ++ RR+ L Sbjct: 293 VASIAMYAAVQSGFQAALMVPTEILAEQHANSLVELLQPLDITVALLTSSVKGKKRRELL 352 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428 + + G +++GTHAL Q+ + + KL LVI DEQHRFGV+QR L +K P VL MTA Sbjct: 353 QLLEDGAIDVVVGTHALIQEEVVFSKLGLVITDEQHRFGVKQRRVLREKGEYPDVLFMTA 412 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488 TPIPRTL +T+ G++D+S I E PAGRK I+T + +D VI ++ + +G++ Y I Sbjct: 413 TPIPRTLAITAFGEMDVSIIDELPAGRKAIETFWVKHEMLDRVIGFMEKEIQKGRQVYII 472 Query: 489 CPQIEEKKESNFRSVVERFNSLHE--HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 CP IEE ++ + ++ ++ +N L + H + ++HG++ +KE +M F L+ Sbjct: 473 CPLIEESEKLDVQNAIDVYNILEQKWHGRHKVGLMHGKLLPAEKEDIMRDFNENNLDCLV 532 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 +TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG E S CIL+ +P ++ Sbjct: 533 STTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGSEQSYCILIANPK-TEVGKE 591 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKH 665 R+S++ T DGF+++E DL+ R GE G KQSG+P+F +A +HD +LEIAR+DA Sbjct: 592 RMSIMTETNDGFVVSERDLELRGPGEFFGSKQSGVPEFQVADM-VHDYRVLEIARQDAAE 650 Query: 666 I-----LTQDPDLTSVRGQ 679 + LT++P ++ Q Sbjct: 651 LIFTENLTENPAYQALYAQ 669 >gi|121603237|ref|YP_980566.1| ATP-dependent DNA helicase RecG [Polaromonas naphthalenivorans CJ2] gi|120592206|gb|ABM35645.1| ATP-dependent DNA helicase RecG [Polaromonas naphthalenivorans CJ2] Length = 715 Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust. Identities = 235/660 (35%), Positives = 357/660 (54%), Gaps = 33/660 (5%) Query: 40 RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99 R IDL + P + D ++++ + +V G ++ HS ++ RR + ++DG+ Sbjct: 47 RDIDLALHLPLRYEDETRITRLADARDGEVVQFEGEVT-HSEVLIRSRRQLLVTVDDGSD 105 Query: 100 EITLLF--FYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LI 156 L F FY + +V G + V G+++ MVHPH+ + P + Sbjct: 106 TCVLRFLNFYPSHQKTLSV---GAWVRVRGELRGGFLGREMVHPHFKLAGGE---LPGAL 159 Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK---SFPSIAEAFNIIHNPR 213 VY GL +K ++ L+R L E I L K S+ EA +H+P Sbjct: 160 TPVYPTSAGLPQVYLRKAVLSGLARAD-LSETIPAPFLSKNMPLRLSSLREALQFLHHPT 218 Query: 214 KAKDFEW----TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN------VEGKIAQ 263 + + PA +RL +ELLA QI+ L R+ +N + + Sbjct: 219 PDVALQTLEDRSHPAWQRLKAEELLAQQISQLQSRRVRAAMRAPALNGPAMRGTHCTLQE 278 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 ++L +PF T +Q+ +I D+ + M R+LQGDVG+GKT+VA +A A ++AG Q Sbjct: 279 QLLERLPFRLTGAQQRVSAEIEVDLKKNVPMHRLLQGDVGAGKTVVAALAAARCIDAGWQ 338 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 +MAP ILA+QH+ + + + I +TG+ RR+ L + G+A ++IGTH Sbjct: 339 CALMAPTEILAEQHFSKLISWLEPLGIKTARLTGSQKPKERREMLALVESGEAGLVIGTH 398 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRL----KLTQKATAPHVLLMTATPIPRTLVLTS 439 A+ Q +++ L L I+DEQHRFGV QRL K+T + PH+L+MTATPIPRTL ++ Sbjct: 399 AVIQSKVKFKNLALAIIDEQHRFGVAQRLALRSKMTHEGQEPHLLMMTATPIPRTLAMSY 458 Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499 D+D+S + E P GR PI T ++ R DEVI R++ +++G++ YW+CP IEE + + Sbjct: 459 YADLDVSTLDELPPGRTPIVTKLVNDARRDEVIARIQAQIAQGRQIYWVCPLIEESESID 518 Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 + + +L E + ++H RM +K++VM F G +L++TTVIEVG+DV Sbjct: 519 LVNATQTHAALSEALPGVMVGLLHSRMPPAEKKAVMSLFTEGVMAVLVSTTVIEVGVDVP 578 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH----PPLSKNSYTRLSVLKNT 614 +AS+++IE+AE FGL+QLHQLRGRVGRG S+C+LLY P L + + RL + T Sbjct: 579 NASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYSTGDAPRLGEVARARLKAMVET 638 Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 DGF IA DL R GE LG +QSG A + LL AR+ A +L Q PDL Sbjct: 639 NDGFEIARRDLDIRGPGEFLGARQSGAAMLRFADLQTDAGLLAWAREVAPLMLDQYPDLA 698 >gi|306829933|ref|ZP_07463120.1| DNA helicase RecG [Streptococcus mitis ATCC 6249] gi|304427944|gb|EFM31037.1| DNA helicase RecG [Streptococcus mitis ATCC 6249] Length = 671 Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust. Identities = 240/663 (36%), Positives = 377/663 (56%), Gaps = 25/663 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQAGLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL K S +A +H P KD A R+ ++EL Q+ L ++ + Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ +N + + N+PF+ T++QE ++++IL DM + M R+LQGDVGSG Sbjct: 226 NRVQGSGLVLNWSQEKVTVVKENLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QA +M P ILA+QH+E ++ + ++ ++TG++ + +R Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPDLKLA--LLTGSLKASEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LE IA G+A +IIGTHAL QD + Y +L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T GD+D+S I + PAGRKPI T I ++ V+ L+ + +G +A Sbjct: 404 MTATPIPRTLAITVFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPRVLTWLEGEIQKGSQA 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + +A++HG+M +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQDFKERKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + + Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADVIEDFPILEEARKVA 642 Query: 664 KHI 666 +I Sbjct: 643 SYI 645 >gi|77919208|ref|YP_357023.1| ATP-dependent DNA helicase RecG [Pelobacter carbinolicus DSM 2380] gi|77545291|gb|ABA88853.1| ATP-dependent DNA helicase RecG [Pelobacter carbinolicus DSM 2380] Length = 717 Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust. Identities = 242/689 (35%), Positives = 380/689 (55%), Gaps = 31/689 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL T RGVG + + K G L+ P + DR I+++ + Sbjct: 14 LGTPLDTIRGVGPR---LVEKFAKMGVFTVEH---ALYTLPFRYEDRRRLTPIAQLKPDC 67 Query: 69 IVTITGYI--SQHSSFQLQKRRPYKILLNDGTGEITLLFF-YRKTEMLKNVFFEGRKITV 125 G + + + +R+ +++++ D +G I+L +F YRKT + K + GR+ Sbjct: 68 KEIFVGEVLAASEKTTSRSRRKLFEVIVGDSSGSISLKWFHYRKTWIQKQ-YPLGRRGIF 126 Query: 126 TGKIKKLKNRIIMVHPHYIF-HNSQD---------VNFPLIEAVYSLPTGLSVDLFKKI- 174 G++K+ + HP F QD ++F I VY L GL+ +KI Sbjct: 127 YGEVKRFGAIREIHHPDVDFLREGQDPQSLLESDPLSFGRILPVYPLTEGLTQKTIRKIW 186 Query: 175 --IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERL 228 IV+ + V P + ++ ++++ +++A +H P E SPAR L Sbjct: 187 KQIVDRYAEYVVAP--LPDEIRKRQNLMPLSDALRRVHFPSSDSSLKELEEGMSPARRTL 244 Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288 +DEL ++ + L R+ E G ++ + + +PF T++Q + +I +DM Sbjct: 245 VFDELFYLELGMALKRRGVLLEEGHAFKLDHIYTKPLAGMLPFRLTEAQRRVLGEIKRDM 304 Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348 + M R+LQGDVGSGKT+VAL+A A+E Q ++AP ILA+QH+ + + + Sbjct: 305 MSPHPMNRLLQGDVGSGKTVVALMAALVAIENRTQVAVVAPTEILAEQHFFQFQGWMKAL 364 Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408 + V +TG+ P A RR+ L+++ + +++GTHA+ QD +++ L L I+DEQHRFGV Sbjct: 365 GLGVVFLTGSTPTAQRREILQQLKNSTVDMVVGTHAVLQDDVEFAALGLGIIDEQHRFGV 424 Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468 QR L +K P +L+MTATPIPRTL LT GD+ +S I + P GR+P+ T +I + Sbjct: 425 LQRACLRKKGKHPDLLVMTATPIPRTLALTVYGDLALSVIDQMPPGRQPVNTKVIVDQQR 484 Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMS 526 + + ++ L EG++AY + P +EE ++S+ + E L E I ++HG+M Sbjct: 485 RQAYQTIRNELVEGRQAYIVYPLVEETEKSDLMAATEGAEFLQEKVFPDKRIGVLHGKMR 544 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 DKE++M FK G +L++TTVIEVGIDV +A++++IE+AE FGLAQLHQLRGRVGRG Sbjct: 545 PADKEAIMRCFKAGELDILVSTTVIEVGIDVPNATVMMIEHAERFGLAQLHQLRGRVGRG 604 Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646 + S C+L+ S++ RL V++ T DGF IAE DL+ R GE LG +QSG+P F + Sbjct: 605 QHQSYCLLIRSHRCSEDGLRRLDVMEATTDGFKIAEADLEIRGPGEFLGTRQSGLPDFRV 664 Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTS 675 A +LE AR++A I LTS Sbjct: 665 ANLIRDGRILEQARQEAFSIANDPGFLTS 693 >gi|312143899|ref|YP_003995345.1| ATP-dependent DNA helicase RecG [Halanaerobium sp. 'sapolanicus'] gi|311904550|gb|ADQ14991.1| ATP-dependent DNA helicase RecG [Halanaerobium sp. 'sapolanicus'] Length = 685 Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust. Identities = 248/669 (37%), Positives = 378/669 (56%), Gaps = 29/669 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI--SEISE 66 L + +GVG K++ L+K+ N DLL+Y P + DR I ++I E Sbjct: 5 LLDEVQYIKGVGPKWAKKLAKL------NIETVYDLLYYFPREYKDRSQISSIRYAQIGE 58 Query: 67 ERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 E VTI + + +++K K+ +D T + +++ + L+++F EG+ + Sbjct: 59 E--VTIKAEVIKVEYKKIRKNFDLLKVTFSDDTDVLNGIWYNQG--YLRDIFEEGKFYLL 114 Query: 126 TGKI-----KKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 +GKI KK K + I +P + I NS +N I +YSL GL+ ++++ A Sbjct: 115 SGKINEKTWKKYKRKEI-DNPVFEKIGDNSSVLNTGRIVPIYSLTEGLTQRRLRRVMANA 173 Query: 179 LSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237 L + L + + LL+K + P + + +H P+ K E +R+RLA++E Q Sbjct: 174 LKKYSSYLDDKLPDFLLKKYNLPGLKTSILGMHFPKSDKHQE---VSRKRLAFEEFFYFQ 230 Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 + L +++ E GI +I + L + F T +Q+ K+I +DM K M R+ Sbjct: 231 LYALDKKQKNNIEEGIQHEAVPEIEARFLSELDFELTTAQKRVWKEISKDMESKEAMSRL 290 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 LQGDVGSGKT++A ++ ++ Q V MAP ILA+QHY + N + ++TG Sbjct: 291 LQGDVGSGKTIIAALSFLESLANDYQGVFMAPTEILAEQHYLNFLELFNNFDYEITLLTG 350 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 ++ RR+ E+I+ G +IIGTHALFQ+ I+Y KL LV++DEQHRFGV+QR L +K Sbjct: 351 SLKNPERREIEEKISAGDIDLIIGTHALFQEGIEYQKLGLVVIDEQHRFGVEQRHSLKEK 410 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 P +L+MTATPIPR++ + GD+D+S I E P GRK T NR ++ LK Sbjct: 411 GDNPDLLIMTATPIPRSMAMLVYGDLDLSVIDEMPPGRKRTATFWRRENRRKKIYSFLKE 470 Query: 478 VLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVM 534 + EG++AY +CP IE E + S E + L F + S+A++H + + +K+ +M Sbjct: 471 KIKEGRQAYIVCPLIEVSAEMPDLISAEELYEKLKNGFFADFSLALLHSGIKEEEKKEIM 530 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F+ G +LIATTVIEVG+DV +AS++IIENAE FGLAQLHQLRGRVGRG + + CIL Sbjct: 531 LQFRAGKIDILIATTVIEVGVDVSNASLMIIENAERFGLAQLHQLRGRVGRGRDQAYCIL 590 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 + +PP + + RL ++ + DGF IAEEDLK R GE G +Q G+ + + Sbjct: 591 ISNPP-GEEAEKRLEIMTKSSDGFYIAEEDLKMRGPGEFFGTRQHGLDDLKVGSLTEDQA 649 Query: 655 LLEIARKDA 663 LLE AR +A Sbjct: 650 LLEKARSEA 658 >gi|312135040|ref|YP_004002378.1| ATP-dependent DNA helicase recg [Caldicellulosiruptor owensensis OL] gi|311775091|gb|ADQ04578.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor owensensis OL] Length = 679 Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust. Identities = 231/613 (37%), Positives = 365/613 (59%), Gaps = 19/613 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS-QHSSFQLQKRRPYKILLNDGTGEI 101 DLL++ P ++D KI E+ + + + ++ + + + + KI + DGTG + Sbjct: 32 DLLWHIPRKYLDYSKLKKIRELCDGEVESFIAKVAGKPVEIETKSIKIIKIPVEDGTGVV 91 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161 T ++F + + +KNV EG +GKI++ I + +P + ++ ++ I VY+ Sbjct: 92 TTVWFNQ--DYIKNVLKEGEIFCFSGKIERKGFYIEVKNPEFEKYDQHLLHTGRIVPVYN 149 Query: 162 LPTGLSVDLFKKIIVEALSRLP-----VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216 GLS + + II L+++ ++P +I+ QK + I A IH P Sbjct: 150 STEGLSQKVIRNIINNLLNQIDGALEDIIPAYIK----QKYNLKDINFAIKNIHFPENKL 205 Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276 E AR+RL ++E Q+ALLL+++ +K G+ I ++ + +PF T++ Sbjct: 206 SLEL---ARKRLVFEEFYLLQLALLLLKENIEKNEGLKIENAQNSLEEFEKFLPFELTEA 262 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q+ + +I QD+ +M R++QGDVG GKT+VAL + A ++AG Q +MAP +LA Q Sbjct: 263 QKRVLAEIAQDLESTKQMNRLIQGDVGCGKTVVALASAYATIKAGYQVALMAPTEVLALQ 322 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 HY KKY N + V ++ G+ P+ + L+ + HG ++IGTHAL QD +++ L Sbjct: 323 HYNECKKYFGN-KFNVRLLIGSTPKKEKEIILKELEHGLCKMVIGTHALIQDEVKFKNLG 381 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 L I DEQHRFGV QR++LT+K ++P++L+MTATPIPRTL L GD+DIS I + P GRK Sbjct: 382 LAITDEQHRFGVIQRVELTKKGSSPNILVMTATPIPRTLSLVLYGDLDISIIDQLPPGRK 441 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-- 514 I T + + V +K L EG++ YWICP IEE + N +S VE SL E F Sbjct: 442 KILTYAVDESFRQRVYNFIKKQLDEGRQVYWICPLIEESETLNAKSAVEFAKSLKEGFFK 501 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 +I +HG++S +++ +++ FK+G +L++TTV+EVGI+V +A++++IENAE FGLA Sbjct: 502 DYNIGCLHGKLSAKERDKILNDFKDGYIHILVSTTVVEVGINVPNATVMVIENAERFGLA 561 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRGE S CI L++ S+ + R+ + +++GF IAE DLK R G++ Sbjct: 562 QLHQLRGRVGRGEHQSYCI-LFNQSDSEIAKKRMIAITRSQNGFEIAEMDLKLRGPGDLF 620 Query: 635 GIKQSGMPKFLIA 647 G KQ G+ F +A Sbjct: 621 GTKQHGVMNFKVA 633 >gi|330826895|ref|YP_004390198.1| ATP-dependent DNA helicase RecG [Alicycliphilus denitrificans K601] gi|329312267|gb|AEB86682.1| ATP-dependent DNA helicase RecG [Alicycliphilus denitrificans K601] Length = 705 Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust. Identities = 238/668 (35%), Positives = 359/668 (53%), Gaps = 37/668 (5%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL + P + D I E V + G ++ S Q++ RR + L DGT Sbjct: 28 TRDIDLALHLPLRYEDETRITPIRSAREGETVQVEGTVTA-SEIQMRPRRQLVVTLEDGT 86 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 G L FF K + G ++ G+++ M+HP F ++ + Sbjct: 87 GSCELRFFSFYPSHQKAMAV-GERLRARGEVRGGFWGRQMLHP--AFRKAEGALPAALTP 143 Query: 159 VYSLPTGLSVDLFKKIIVEALSR--LP-VLPEWIEKDLLQKKSFPSIAEAFNI------I 209 VY L ++ + AL+R LP LP +E L + S + + + + Sbjct: 144 VYPTVAQLPQAYLRRAVASALARVDLPETLPPGLEPPLARFDSENGLHRPWGLRESLLFL 203 Query: 210 HNPRKAKDF------EWTSPARERLAYDELLAGQIALLLM---RKQFKKEIGIPINVEGK 260 HNP A D + + PA +RL +ELLA Q++ L+ R + + P Sbjct: 204 HNP--APDVALATLQDHSHPAWQRLKAEELLAQQLSQLVSKRERARLRAPRLSPAPGAQA 261 Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320 + +++L +PFS T +Q ++I +D+++ M R+LQGDVGSGKT+VA +A A ++A Sbjct: 262 LHEQLLAALPFSLTAAQRRVGEEIARDLARAVPMHRLLQGDVGSGKTVVAALAAARCMDA 321 Query: 321 GGQAVIMAPIGILAQQHYE----FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376 G Q +MAP ILA+QH+ ++ V + G + R LERIA G A Sbjct: 322 GWQCALMAPTEILAEQHFAKLIGWLAPLLAARGRQVAWLAGGQKKKERAAMLERIASGGA 381 Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK----ATAPHVLLMTATPIP 432 +++GTHA+ Q+ +++ L L ++DEQHRFGV QRL L QK PH+L+M+ATPIP Sbjct: 382 ALVVGTHAVIQEQVRFRNLALAVIDEQHRFGVAQRLALRQKLQHDGMEPHLLMMSATPIP 441 Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492 RTL ++ D+D+S I E P GR PI T +I +R D+V+ER+ ++ G++ YW+CP I Sbjct: 442 RTLAMSYYADLDVSTIDELPPGRTPIVTKLIADSRKDQVVERIGAQVAAGRQVYWVCPLI 501 Query: 493 EEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551 EE + + + L E ++ ++H RM +K++VM+ FK+G +L++TTVI Sbjct: 502 EESEALDLSNATATHADLSEALPGVTVGLLHSRMPSAEKKAVMEEFKSGRMGVLVSTTVI 561 Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP----LSKNSYTR 607 EVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG S+C+LLY L + + R Sbjct: 562 EVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYSTGDSGRLGETARDR 621 Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 L + T DGF IA DL+ R GE LG +QSG A +LLE AR A +L Sbjct: 622 LKAMAETTDGFEIARRDLEIRGPGEFLGARQSGDALLRFADLATDTALLEWARAAAPQML 681 Query: 668 TQDPDLTS 675 + L + Sbjct: 682 DRHAALAA 689 >gi|118444201|ref|YP_878305.1| ATP-dependent DNA helicase RecG [Clostridium novyi NT] gi|118134657|gb|ABK61701.1| ATP-dependent DNA helicase RecG [Clostridium novyi NT] Length = 673 Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust. Identities = 242/669 (36%), Positives = 377/669 (56%), Gaps = 30/669 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 ++ + + +G+G K L++ N +DLL Y P + +Y IS+I+ E Sbjct: 3 VYDDIVSLKGIGPKTKELLNQ------CNIYNILDLLLYFPRDYEKTYYCDDISKITNED 56 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 V I + KR + +T + + +KN F ++ + GK Sbjct: 57 KVLIKAKVKSIKKDAYVKRNMVISTVEFIKDNVTFKGKWFNQKYIKNKFMVNKEYFIFGK 116 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188 ++ +N I +P + +F + YSL L+ F+K I L + ++ E Sbjct: 117 VQLERNNITFTNPTIV---EDPESFLNVIPKYSLKGSLTNKFFEKTIKHVLDNIEIV-EN 172 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248 + +L K + S+ EA IH P K E A+ RL + EL + LL++ KQ+K Sbjct: 173 LPSQILNKYNLISLDEAIRNIHKPTGFKSLE---EAQNRLKFQELFTYSLKLLML-KQYK 228 Query: 249 KEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 K G+ + ++ KIL++ IP + T SQ I++IL D + M R++QGDVGSGKT Sbjct: 229 KSEGVAFKISDEL--KILKDSIPVTLTNSQNKVIREILIDEKRDVPMNRLVQGDVGSGKT 286 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +VALI++ ++ G Q +MAP ILA QHY + ++ I +E++TG+ H+ + Sbjct: 287 IVALISIFNVIKNGYQGCLMAPTEILANQHYTQAIELFKDFNISIELLTGST--KHKDEV 344 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 R+ +G +IIGTHAL +D +++ KL +V+ DEQHRFGV+QR KL K +L+MT Sbjct: 345 KNRLKNGSIDLIIGTHALLEDDVEFSKLGIVVTDEQHRFGVKQRSKLYNKNNNIDILVMT 404 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL-KVVLSE---GK 483 ATPIPRTL L+ GD+D+S I E P GRK I T + D+ +R+ L E G Sbjct: 405 ATPIPRTLALSIYGDLDVSSIDELPPGRKKIDTYAVN----DKFRKRVYNFALKEIHSGA 460 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541 + Y +CP +EE ++ N +SV + + L E++ + I I+HG+M +K+ +M+ FKNG Sbjct: 461 QVYIVCPLVEENEDLNIKSVEKLYLELKENYFKDTEIEILHGKMPSKEKDHIMNKFKNGH 520 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 K+LI+TTVIEVG++V +A+++IIENAE FGL+QLHQLRGRVGRG++ S CIL+ + S Sbjct: 521 IKVLISTTVIEVGVNVPNATLMIIENAERFGLSQLHQLRGRVGRGDKKSYCILITNSN-S 579 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 + + R++V+ + DGF IAEEDLK R GEI G Q G F+I+ +L+ A K Sbjct: 580 EITKKRMNVITKSNDGFFIAEEDLKLRGSGEIFGFNQHGEDGFIISNIVDDYKILKSANK 639 Query: 662 DAKHILTQD 670 +A+ ++ + Sbjct: 640 EARSLINSN 648 >gi|148994014|ref|ZP_01823370.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP9-BS68] gi|168488586|ref|ZP_02712785.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP195] gi|147927481|gb|EDK78509.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP9-BS68] gi|183572842|gb|EDT93370.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP195] gi|332072525|gb|EGI83008.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA17570] Length = 671 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 242/674 (35%), Positives = 384/674 (56%), Gaps = 30/674 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL K S +A +H P KD A R+ ++EL Q+ L ++ + Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ +N + + ++PF+ T++QE ++++IL DM + M R+LQGDVGSG Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QA +M P ILA+QH+E ++ N ++ ++TG++ A +R Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + L+ IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 EVLQTIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRK I T I ++ +V+ L+ + +G +A Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKSIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + +A++HGRM +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFACKAEVALLHGRMKSDEKDQIMQDFKERKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + + Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642 Query: 664 KHILT-----QDPD 672 +I + +DP+ Sbjct: 643 SYISSIEAWQEDPE 656 >gi|315282812|ref|ZP_07871135.1| ATP-dependent DNA helicase RecG [Listeria marthii FSL S4-120] gi|313613541|gb|EFR87362.1| ATP-dependent DNA helicase RecG [Listeria marthii FSL S4-120] Length = 682 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 238/668 (35%), Positives = 383/668 (57%), Gaps = 29/668 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P + +G+G++ + L ++ + DLL+ P + D R +SE++ E +T Sbjct: 8 PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 I G + ++ R+ K+ T G++ + F+ + LK+ G +T++GK Sbjct: 61 IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKISVGETVTISGKWD 119 Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSRLPVLP 186 K + ++ N ++ +E VY L L ++ + ++ +A S + Sbjct: 120 KSRAQVTASKIKIGAVENEEE-----LEGVYRLKGTLRNKTMQKYTRLAFDAYS--SKIE 172 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK- 245 E I +LL+K EA I+H P K+ E AR R+ Y+E L Q+ + RK Sbjct: 173 EVIPTNLLEKYQLMDRLEAVRILHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKI 229 Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + +K GI IN + + + + ++PF TK+Q+ + +I DM M R+LQGDVGSG Sbjct: 230 EREKSGGISINYDVEDLRHYIESLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSG 289 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA IAM AA ++G Q+ +M P ILA+QH + + Q I V ++T ++ RR Sbjct: 290 KTVVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRR 349 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + L + +G ++IGTHAL QD + Y++L LVI DEQHRFGV QR L +K P VL Sbjct: 350 ELLAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLF 409 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D VI ++ + +G + Sbjct: 410 MTATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIEKGHQV 469 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCK 543 Y ICP IEE ++ + + ++ FN L + + ++HG++ DKE +M F + Sbjct: 470 YIICPLIEESEKLDVENAIDVFNILQNKWGTKYTPGLMHGKLLPADKEQIMRDFNDKKID 529 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 L++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ P ++ Sbjct: 530 CLVSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEV 588 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKD 662 R+ ++ T DGF+++E DL+ R G+ G KQSG+P+F +A +HD +LEIAR+D Sbjct: 589 GKERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQD 647 Query: 663 AKHILTQD 670 A H++ ++ Sbjct: 648 AVHMIFEE 655 >gi|16800991|ref|NP_471259.1| ATP-dependent DNA helicase RecG [Listeria innocua Clip11262] gi|16414426|emb|CAC97155.1| lin1925 [Listeria innocua Clip11262] Length = 682 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 238/668 (35%), Positives = 384/668 (57%), Gaps = 29/668 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P + +G+G++ + L ++ + DLL+ P + D R +SE++ E +T Sbjct: 8 PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 I G + ++ + K+ T G++ + F+ + LKN G +T++GK Sbjct: 61 IQGEVLTEATVAFYGHKKSKLSFRVSTEGQVIKIDFFNQP-YLKNKISVGETVTISGKWD 119 Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSRLPVLP 186 K + +I N ++ +E VY L L ++ + ++ ++ S+ + Sbjct: 120 KSRAQITASKIKIGAVENEEE-----LEGVYRLKGTLRNKTMQKYTRLAFDSYSK--DIE 172 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK- 245 E I +LL+K EA ++H P K+ E AR R+ Y+E L Q+ + RK Sbjct: 173 EVIPTNLLEKYQLMDRLEAVRVLHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKI 229 Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + +K GI IN + + + + ++PF TK+Q+ + +I DM M R+LQGDVGSG Sbjct: 230 EREKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSG 289 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA IAM AA ++G Q+ +M P ILA+QH + + Q I V ++T ++ RR Sbjct: 290 KTVVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRR 349 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + L + +G ++IGTHAL QD + Y++L LVI DEQHRFGV QR L +K P VL Sbjct: 350 ELLAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRILREKGEYPDVLF 409 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D VI ++ + +G + Sbjct: 410 MTATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQV 469 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCK 543 Y ICP IEE ++ + ++ ++ FN L + + ++HG++ DKE +M F + Sbjct: 470 YIICPLIEESEKLDVQNAIDVFNILQNKWGTKYVPGLMHGKLLPADKEQIMRDFNDKKID 529 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 L++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG E S CIL+ P ++ Sbjct: 530 CLVSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGAEQSYCILIADPK-TEV 588 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKD 662 R+ ++ T DGF+++E DL+ R G+ G KQSG+P+F +A +HD +LEIAR+D Sbjct: 589 GKERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQD 647 Query: 663 AKHILTQD 670 A H++ ++ Sbjct: 648 AVHMIFEE 655 >gi|146329601|ref|YP_001209906.1| ATP-dependent DNA helicase RecG [Dichelobacter nodosus VCS1703A] gi|146233071|gb|ABQ14049.1| ATP-dependent DNA helicase RecG [Dichelobacter nodosus VCS1703A] Length = 684 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 235/622 (37%), Positives = 359/622 (57%), Gaps = 29/622 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP-YKILLND-GTGE 100 DLL + P + D ++++ + + + G + + + Q Q RRP +LL D GE Sbjct: 31 DLLLHLPQRYEDHSRLTAMNDLQDGQTAFVHGQVIR-AEIQ-QYRRPVLTVLLRDRAGGE 88 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA-- 158 + L +F+ +K F GR GKI + M HP + ++ + PL + Sbjct: 89 LYLRYFHFYPNQIKT-FRAGRWGLFYGKINRSFALPEMSHPEITWLTNEHLP-PLPKTWY 146 Query: 159 -VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 +YS GL+ +++ I + L +L + E D L +K F S+A+A I+H P D Sbjct: 147 PIYSSVQGLTQAHWQQAINDVLKQLVI----SETDALTQKGFLSLAQALRILHQPPLTAD 202 Query: 218 FEW----TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 PAR+RL +EL A Q++ R +++ + + Q+ + +PF+ Sbjct: 203 PNALLLPQHPARQRLIMEELCAHQLSFTQARMHQQQKTAPELPENSVLIQQFIAALPFTL 262 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T +Q+ +I D+++ M+R++QGDVGSGKT++AL+A A+ AG Q MAP +L Sbjct: 263 TAAQKRVHAEIAADLAKNAPMMRLVQGDVGSGKTVIALLAALQAIAAGKQVAFMAPTELL 322 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QH +KK + + I ++TG + +R L+ I G+A +I+GTHALFQ + Y+ Sbjct: 323 AEQHAANMKKLLKLSAIEPVLLTGKLSAKTKRARLKAIERGEAALIVGTHALFQSQVNYH 382 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKA---TAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 +L L+I+DEQHRFGV QR +L K+ APH L++TATPIPRTL ++ G + S I + Sbjct: 383 RLALIIIDEQHRFGVHQRFQLQDKSHEEWAPHQLILTATPIPRTLAMSLYGKLSTSIIDQ 442 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 PAGRK I+T ++ + D +I RL V +G++AYW+CP IEE V E ++ Sbjct: 443 LPAGRKSIQTAVMSNHHRDTLIARLGAVCRKGQQAYWVCPFIEESDV----FVCENGEAM 498 Query: 511 HEHFTSS-----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + S + +HG++S + M++F G +L+ATTVIEVG+DV +A+++II Sbjct: 499 TAYLQRSLPDLRVEFVHGKLSSDARREKMEAFAAGAVDILVATTVIEVGVDVANATLMII 558 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625 ENAE FGL+QLHQLRGRVGRG + S C+LLY PL +N+ RL+V++ T DGF IAEEDL Sbjct: 559 ENAERFGLSQLHQLRGRVGRGSQQSYCVLLYQAPLGENAQRRLAVMRATTDGFQIAEEDL 618 Query: 626 KQRKEGEILGIKQSGMPKFLIA 647 R GE+LG KQ+G F +A Sbjct: 619 LLRGAGELLGTKQTGENGFYLA 640 >gi|116873246|ref|YP_850027.1| ATP-dependent DNA helicase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742124|emb|CAK21248.1| ATP-dependent DNA helicase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 682 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 238/668 (35%), Positives = 385/668 (57%), Gaps = 29/668 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P + +G+G++ + L ++ + DLL+ P + D R +SE++ E +T Sbjct: 8 PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 + G I ++ R+ K+ T G++ + F+ + LK+ G +T++GK Sbjct: 61 VQGEILTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKIIVGEIVTISGKWD 119 Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSRLPVLP 186 K + +I N ++ +E VY L L ++ + ++ ++ S+ + Sbjct: 120 KSRAQITASKIKLGAVENEEE-----LEGVYRLKGTLRNKTMQKYTRLAFDSYSK--DIE 172 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK- 245 E I +LL+K EA I+H P K+ E AR R+ Y+E L Q+ + RK Sbjct: 173 EVIPTNLLEKYQLIDRLEAVRILHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKI 229 Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + +K GI IN + + + + ++PF TK+Q+ + +I DM M R+LQGDVGSG Sbjct: 230 EREKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSG 289 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA IAM AA ++G Q+ +M P ILA+QH + + Q I V ++T ++ RR Sbjct: 290 KTVVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKRRR 349 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + L + +G ++IGTHAL QD + Y++L LVI DEQHRFGV QR L +K P VL Sbjct: 350 ELLAMLENGSVDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRILREKGEYPDVLF 409 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D VI ++ + +G + Sbjct: 410 MTATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQV 469 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCK 543 Y ICP IEE ++ + ++ ++ FN L + + ++HG++ DKE +M F + Sbjct: 470 YIICPLIEESEKLDVQNAIDVFNILQNKWGTKYVPGLMHGKLLPADKEQIMRDFNDKKID 529 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 L++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ P ++ Sbjct: 530 CLVSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEV 588 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKD 662 R+ ++ T DGF+++E DL+ R G+ G KQSG+P+F +A +HD +LEIAR+D Sbjct: 589 GKERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQD 647 Query: 663 AKHILTQD 670 A H++ ++ Sbjct: 648 AVHMIFEE 655 >gi|168484888|ref|ZP_02709833.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae CDC1873-00] gi|172041962|gb|EDT50008.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae CDC1873-00] Length = 671 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 241/674 (35%), Positives = 384/674 (56%), Gaps = 30/674 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL K S +A +H P KD A R+ ++EL Q+ L ++ + Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ +N + + ++PF+ T++QE ++++IL DM + M R+LQGDVGSG Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QA +M P ILA+QH+E ++ N ++ ++TG++ A +R Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + L+ IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 EVLQTIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRK I T I ++ +V+ L+ + +G +A Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKSIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + +A++HG+M +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQDFKERKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + + Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642 Query: 664 KHILT-----QDPD 672 +I + +DP+ Sbjct: 643 SYISSIEAWQEDPE 656 >gi|167754008|ref|ZP_02426135.1| hypothetical protein ALIPUT_02295 [Alistipes putredinis DSM 17216] gi|167658633|gb|EDS02763.1| hypothetical protein ALIPUT_02295 [Alistipes putredinis DSM 17216] Length = 703 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 249/698 (35%), Positives = 379/698 (54%), Gaps = 31/698 (4%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE--ERIVTITGY 75 GVG+ + L K + D+L ++P +IDR +I +I+E ++ G Sbjct: 14 GVGEARARLLEKELGIRTLG-----DMLCHYPFRYIDRTRIYRIDQIAEGDSALIQFRGR 68 Query: 76 ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 I+ S ++R + ++NDG+G L++F + + ++ GR+ + G+ K Sbjct: 69 ITGVSYAGAGRKRRFTAVVNDGSGVAELVWF-QGIKWIEKRIEVGREYLIFGRPSFFKGE 127 Query: 136 IIMVHPHY-----IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWI 189 + +VHP F + ++ +YS LS L K I + L P++ + I Sbjct: 128 LSVVHPEIETIEKAFSRKAESG---LQGIYSSTERLSSVLGTKGIYTIVCNLWPMVRDHI 184 Query: 190 EKDLLQKK----SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR- 244 + L + S+ +A IH P+ E A+ RL ++ELL Q+ + R Sbjct: 185 RETLPDRMRTRYGLLSLRDALYNIHFPQSP---ELLRQAQYRLKFEELLGIQLGIQSRRT 241 Query: 245 KQFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 + K G G + +PF T +Q+ +K+I QD +M R+LQGDVG Sbjct: 242 ARLSKNNGFLFPKVGGVFNTFFNTRLPFPLTGAQKRVVKEIRQDTISGYQMNRLLQGDVG 301 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKTLVAL++M AV+ G QA +MAP ILA+QHY ++ + + V I+TG Sbjct: 302 SGKTLVALMSMLLAVDNGFQACMMAPTEILARQHYATFQRMLEGMDVRVAILTGASKARE 361 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAPH 422 RR+AL IA G ++IGTHAL +D +Q+ L V++DEQHRFGV+QR +L T+ PH Sbjct: 362 RREALAGIADGSIDLLIGTHALIEDRVQFSNLGFVVIDEQHRFGVEQRARLWTKNEQPPH 421 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 +L+MTATPIPRTL +T GD+D+S I E P GR+PI+TV + ++ + +G Sbjct: 422 ILVMTATPIPRTLAMTLYGDLDVSVIDELPPGRQPIRTVHYTDAARLRLFGFMRQEIKKG 481 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKN 539 ++ Y + P I+E + +++ + + + ++ F I HG+M DKE M FK+ Sbjct: 482 RQIYVVYPLIKESETMDYKDLQDGYEAISRDFPLPEYVTTICHGKMKPEDKEESMRQFKS 541 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G +++AT+VIEVG+DV +A++++IE+AE FGL+QLHQLRGRVGRG + S CIL+ Sbjct: 542 GEANIMVATSVIEVGVDVPNATVMVIESAERFGLSQLHQLRGRVGRGSQQSYCILMSGEK 601 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEI 658 LSK + RL + T DGF +AE DLK R G++ G QSGM L IA P L +L + Sbjct: 602 LSKEARLRLEAMCETNDGFRLAELDLKLRGAGDVNGTLQSGMAFDLKIANPTLDSQILTV 661 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696 R+ A +LT DP LT + +R L Y E F Sbjct: 662 TREAAAEVLTADPTLTQNGHEGLRELRKRYSGREEIDF 699 >gi|332881158|ref|ZP_08448818.1| ATP-dependent DNA helicase RecG [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680907|gb|EGJ53844.1| ATP-dependent DNA helicase RecG [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 705 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 253/700 (36%), Positives = 380/700 (54%), Gaps = 43/700 (6%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 N L + RGVGK+ + L + ++ DLL P+ +IDR KI+E+ Sbjct: 6 NLLHTSVEYLRGVGKQRAELLKSELGI-----EQYQDLLNLFPNRYIDRTKFYKINELQN 60 Query: 67 ERI-VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKI 123 V + G I + +++ +++ D TG++ L++F + + + + Sbjct: 61 NNAEVQLIGKIVNLRTVASAQQKQARLVATFVDETGQMELVWF-KGHKWISDSLKLNESY 119 Query: 124 TVTGKIKKLKNRIIMVHPHYIF--------HNSQDVNFPLIEAVYSLPTGLSVDLFKKII 175 + GK+ M HP H+S +P E + G+S + +++I Sbjct: 120 VIFGKVNHFGGIFSMPHPEMDLLVDFNKAGHSSIQPVYPSTEKLTK--RGVSNRVMRQLI 177 Query: 176 VEALSR-----LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAY 230 + LP I K L + S EA IH P D + A RL + Sbjct: 178 HTVFEEVGYQFMENLPASIRKTL----NLISKQEAMRNIHFP---ADQSMLTKATVRLKF 230 Query: 231 DELLAGQIAL----LLMRKQFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDIL 285 +EL Q+ L LL +++F+ G+P G + +PF T +Q+ +K+I Sbjct: 231 EELFYIQLQLVRKNLLQKQKFQ---GMPFRKVGDAFMNFYNHHLPFPLTNAQKRVLKEIR 287 Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345 D+ +M R+LQGDVGSGKT+VAL+ M AV+ G QA +MAP ILA QHY+ I Sbjct: 288 ADLGSNAQMNRLLQGDVGSGKTIVALMTMLLAVDNGFQACLMAPTEILATQHYQSISALL 347 Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405 QNT I V ++TG+ RR E++ G I+IGTHAL +D +Q+ L L I+DEQHR Sbjct: 348 QNTGISVALLTGSSKTKERRILDEQLQEGSLSILIGTHALLEDKVQFANLGLAIIDEQHR 407 Query: 406 FGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464 FGV+QR KL +K T PH+L+MTATPIPRTL ++ GD+D+S I E P GRKPIKT+ Sbjct: 408 FGVEQRAKLWRKNTLPPHILVMTATPIPRTLAMSVYGDLDVSVIDELPPGRKPIKTIHHF 467 Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAII 521 NR E E +K + +G++AY + P IEE + +F+++ E + + F ++I+ Sbjct: 468 ENRRAETYEFVKKEIDKGRQAYVVYPLIEESEALDFKNLTEGYEYISASFPLPKYKVSIV 527 Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581 HG++ +K+ M+ F ++++ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRG Sbjct: 528 HGKLKPAEKDVEMERFVRNETQIMVATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRG 587 Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641 RVGRG E S CILL +S ++ TR+ + T DGF IAE DLK R G+++G +QSG+ Sbjct: 588 RVGRGSEQSYCILLTGNKMSNDTRTRMETMVRTNDGFEIAEVDLKLRGPGDLMGTQQSGV 647 Query: 642 PKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681 IA +L+ AR A +L DPDL Q + Sbjct: 648 LALKIADIVKDQEILKAARAYAIDLLKADPDLVQPEHQCV 687 >gi|313623266|gb|EFR93510.1| ATP-dependent DNA helicase RecG [Listeria innocua FSL J1-023] Length = 682 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 238/668 (35%), Positives = 385/668 (57%), Gaps = 29/668 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P + +G+G++ + L ++ + DLL+ P + D R +SE++ E +T Sbjct: 8 PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLRD-LSEVAHEERIT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 I G + ++ R+ K+ T G++ + F+ + LK+ G +T++GK Sbjct: 61 IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQX-YLKSKISIGETVTISGKWD 119 Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSRLPVLP 186 K + +I N ++ +E VY L L ++ + ++ ++ S+ + Sbjct: 120 KSRAQITASKIKIGAVENEEE-----LEGVYRLKGTLRNKTMQKYTRLAFDSYSK--DIE 172 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK- 245 E I +LL+K EA ++H P K+ E AR R+ Y+E L Q+ + RK Sbjct: 173 EVIPTNLLEKYQLMDRLEAVRVLHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKI 229 Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + +K GI IN + + + + ++PF TK+Q+ + +I DM M R+LQGDVGSG Sbjct: 230 EREKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSG 289 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA IAM AA ++G Q+ +M P ILA+QH + + Q I V ++T ++ RR Sbjct: 290 KTVVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRR 349 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + L + +G I+IGTHAL QD + Y++L LVI DEQHRFGV QR L +K P VL Sbjct: 350 ELLAMLENGSIDILIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRILREKGEYPDVLF 409 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D VI ++ + +G + Sbjct: 410 MTATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQV 469 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCK 543 Y ICP IEE ++ + ++ ++ FN L + + ++HG++ DKE +M F + Sbjct: 470 YIICPLIEESEKLDVQNAIDVFNILQNKWGTKYVPGLMHGKLLPADKEQIMRDFNDKKID 529 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 L++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ P ++ Sbjct: 530 CLVSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEV 588 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKD 662 R+ ++ T DGF+++E DL+ R G+ G KQSG+P+F +A +HD +LEIAR+D Sbjct: 589 GKERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQD 647 Query: 663 AKHILTQD 670 A H++ ++ Sbjct: 648 AVHMIFEE 655 >gi|307707477|ref|ZP_07643959.1| ATP-dependent DNA helicase RecG [Streptococcus mitis NCTC 12261] gi|307616429|gb|EFN95620.1| ATP-dependent DNA helicase RecG [Streptococcus mitis NCTC 12261] Length = 671 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 239/663 (36%), Positives = 378/663 (57%), Gaps = 25/663 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLTQGISQASLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL K S +A +H P KD A R+ ++EL Q+ L ++ + Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLGEYKQALRRIKFEELFYFQMQLQTLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ ++ + + ++PF+ T++QE ++++IL DM + M R+LQGDVGSG Sbjct: 226 NRVQGSGLVLDWSQEKVSAVKESLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG Q+ +M P ILA+QH+E +K + ++ ++TG++ A +R Sbjct: 286 KTVVAGLAMFAAVTAGYQSALMVPTEILAEQHFESLKSLFPDLKLA--LLTGSLKAAEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LE IA G+A IIGTHAL QD + Y +L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 EVLETIAKGEADFIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T I ++ +V+ L+ + +G +A Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + +A++HG+M +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQEFKEQKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + + Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642 Query: 664 KHI 666 +I Sbjct: 643 SYI 645 >gi|281412262|ref|YP_003346341.1| ATP-dependent DNA helicase RecG [Thermotoga naphthophila RKU-10] gi|281373365|gb|ADA66927.1| ATP-dependent DNA helicase RecG [Thermotoga naphthophila RKU-10] Length = 763 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 235/634 (37%), Positives = 357/634 (56%), Gaps = 21/634 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLL + P + DR K++++ VT G I + + Q +L+DG + Sbjct: 124 DLLEFFPRDYEDRRKIFKLNDLLPGEKVTTQGKIVSVETKRFQNMNILTAVLSDGLVHVL 183 Query: 103 LLFFYRKTEMLKNVF--FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ----DVNFPL- 155 L +F E L+ G+++ VTG +K Y HN++ + + Sbjct: 184 LKWF--NQEYLQTYLKQLTGKEVFVTGTVKS-----NAYTGQYEIHNAEVTPKEGEYARR 236 Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 I +Y L +G+S +KI E + L L E + + +L+K+ + +A+ +H P Sbjct: 237 ILPIYRLTSGISQKQMRKIFEENIPSLCCSLKETLPERILEKRKLLGVKDAYYGMHFP-- 294 Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274 K F ARERLAY+EL Q+A +RK+ +K GIP +EGK+A++ ++++PF T Sbjct: 295 -KTFYHLEKARERLAYEELFVLQLAFQKIRKEREKHGGIPKKIEGKLAEEFIKSLPFKLT 353 Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334 SQ+ A ++I DM + M R+LQGDVGSGKT+VA +A+ EAG Q M P ILA Sbjct: 354 NSQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILA 413 Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394 QHY + I V ++ G + + K + +GQ ++IGTHAL Q+ + + Sbjct: 414 IQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKN 473 Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454 L LVI+DEQHRFGV+QR L K L+M+ATPIPR++ L GD+D++ I E P G Sbjct: 474 LGLVIIDEQHRFGVKQREALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPG 533 Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 RK ++T+++P++R++E+ E ++ + +G +A+ + P IEE + N +S VE + L + Sbjct: 534 RKEVQTMLVPMDRVNEIYEFVRQEVMKGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEV 593 Query: 515 TSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 + ++HGR+S +K+ VM F G +L++TTVIEVGIDV A++++IEN E FG Sbjct: 594 FPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFG 653 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 LAQLHQLRGRVGRG + + C L+ + + + RL DGF IAE DLK R GE Sbjct: 654 LAQLHQLRGRVGRGGQEAYCFLVVG-DVGEEAMERLRFFTLNTDGFKIAEYDLKTRGPGE 712 Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666 G+KQ G+ F +A LLE AR+D + I Sbjct: 713 FFGVKQHGLSGFKVADLYRDLKLLEWAREDVQEI 746 >gi|269926755|ref|YP_003323378.1| ATP-dependent DNA helicase RecG [Thermobaculum terrenum ATCC BAA-798] gi|269790415|gb|ACZ42556.1| ATP-dependent DNA helicase RecG [Thermobaculum terrenum ATCC BAA-798] Length = 786 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 237/671 (35%), Positives = 372/671 (55%), Gaps = 23/671 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P+S+ GVG++ + ++ + R D L Y+P + DR KI+E+ T Sbjct: 109 PISSMPGVGQRRAALFGRL----GIHLIR--DALEYYPREYHDRSNLRKIAELQFGNTET 162 Query: 72 ITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 + + S +L L D TG I +F R ++ G +I VTGK+ Sbjct: 163 FIAKVKEVSVRKLSNNLNLLTARLQDETGFIDATWFSRG--FVRRDLEPGMEIIVTGKVG 220 Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEWI 189 + ++ + P Y + ++ I +Y GL+ L + +I + ++ V + + + Sbjct: 221 QFLGKLKVESPEYEHLDKSLLHSGRIVPIYRSTEGLNNKLLRSVIHDIVAYHSVRIEDHL 280 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249 + L+ + S + +A IH P ++ AR RLA+DE L Q+ L+ + ++ Sbjct: 281 PQHLIDELSLLDLGDALYQIHFP---DSWDQLEAARRRLAFDEFLEIQLGALMKQAVRRR 337 Query: 250 EIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 G + ++V + L N+PF T +QE I++I+ D+ M R+LQGDVGSGKT+ Sbjct: 338 SKGALALDVRKPQIGEFLTNLPFRLTGAQERVIQEIMHDLESDVPMNRLLQGDVGSGKTV 397 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ---NTQIIVEIITGNMPQAHRR 365 VA A+ A G Q IMAP ILA+QHY+ I + V ++TG++ R Sbjct: 398 VAASALITAFANGYQGAIMAPTEILAEQHYKGISRLVSVLGEDAPKVSLLTGSIKGKERD 457 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + + G+ I+IGTHAL Q+ +++ L + +VDEQHRFGV+QR L K PH+L+ Sbjct: 458 DLYQAVEQGEIDILIGTHALIQEGVRFNNLAVCVVDEQHRFGVEQRAALRAKGVNPHLLV 517 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPR+L LT GD+D+S + E P GR+PI+T + + L+ + G++A Sbjct: 518 MTATPIPRSLALTIYGDLDLSVLDEMPPGRQPIQTFALTPEQRSWAYNFLREEVERGRQA 577 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543 Y ICP +EE ++ ++ +E + L ++ + ++HGRM +K+ VM+ F+ G + Sbjct: 578 YIICPLVEESEKIEAKAAIEEYERLQKYVFPDLRLGLLHGRMKPREKDEVMERFRLGELQ 637 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++T V+EVGIDV +A++++IE A+ FGLAQLHQ RGRVGRG E S C+LL P S++ Sbjct: 638 VLVSTAVVEVGIDVPNATVMLIEGADRFGLAQLHQFRGRVGRGTEKSYCLLLSDSP-SED 696 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKD 662 + RL +++ DGF++AEEDLK R GE GI+QSG +A+ L D LLE RK Sbjct: 697 ARKRLEIVQECSDGFVLAEEDLKMRGPGEFYGIRQSGQINLKVAK--LSDFGLLEETRKI 754 Query: 663 AKHILTQDPDL 673 A +L DPDL Sbjct: 755 AAELLEDDPDL 765 >gi|118602897|ref|YP_904112.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567836|gb|ABL02641.1| ATP-dependent DNA helicase RecG [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 686 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 237/653 (36%), Positives = 366/653 (56%), Gaps = 23/653 (3%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI--SE 63 ++ LF+P+ G+G K L+ I G N LLF+ P+ + D+ K+ ++ Sbjct: 1 MHQLFSPIIVLNGLGPKIQQKLNAI---GIFN---LEHLLFHLPTRYQDKTKLTKLNQAQ 54 Query: 64 ISEERIVTIT-GYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122 + +E ++ +T +I Q S+ Q R+ L + G ++ L FF+ K F G Sbjct: 55 VGDEVLIQLTIEHIEQVSTHQ---RQLLCYLSDSGHQDLLLRFFHFNQ---KQNFIRGDI 108 Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEALS 180 I G+IK KN + M HP Y + + + +Y+L + KK I AL Sbjct: 109 IQCFGEIKIGKNSLEMHHPEYRLISKGQAHLLEKTLSPIYALTANIHQAQMKKWIDIALE 168 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAG 236 L + L S P++ +A +H+P+ + E + P+++RL +EL A Sbjct: 169 TLQQSNLYDNFKNLANNSMPTLKQALKTLHHPKVNDNIEQITNFNHPSQQRLIIEELCAQ 228 Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 ++ LL ++ + K + ++ + +K+L + F TK+Q+ +I +I D++ MLR Sbjct: 229 RLNLLQLKDKRKSKKSNIFKIKDVLTKKVLNVLGFQLTKAQQRSIDEINSDLASNFPMLR 288 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 +LQGDVGSGKT+VA+ A A+E G Q IMAP LA QH + Y I + +T Sbjct: 289 LLQGDVGSGKTIVAVFACLQAIENGFQVTIMAPNEALASQHLQEFSNYLDPLGIDIAFLT 348 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G+ R + L++I + IIIGTH Q + + KL LVI+DEQH+FGV QRL L Q Sbjct: 349 GSQSATQRVERLKKIIIDEVKIIIGTHVFLQTQVVFNKLGLVIIDEQHKFGVHQRLSLVQ 408 Query: 417 KA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 KA PH L+MTATPIP +L++++ D+D S I E P GRKP KT+ + ++ D+VIE++ Sbjct: 409 KAHNTPHQLVMTATPIPTSLIMSAYADLDCSVIDELPPGRKPTKTIALSNDKKDKVIEKI 468 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 K V + G + YW+C IEE + +S + L E+ ++ +IHG+M +K ++M Sbjct: 469 KQVCTTGNQVYWVCTLIEESETLRAKSATSTHHYLQENLKELTVVLIHGKMHKDEKSTIM 528 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 D F +L+ATTVIE+G++V ++ +I+IEN+E GL+QLHQLR R GR S CIL Sbjct: 529 DQFLKNKIDVLVATTVIEIGVNVTNSPLIVIENSERLGLSQLHQLRSRAGRDTNTSVCIL 588 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 +Y PLS +S+ RL L+ T DGF IA++DL+ R GEILG +Q+G+ IA Sbjct: 589 MYQAPLSHSSFVRLDTLRQTNDGFKIAQKDLELRGPGEILGTQQAGIANMKIA 641 >gi|331265918|ref|YP_004325548.1| ATP-dependent DNA helicase RecG [Streptococcus oralis Uo5] gi|326682590|emb|CBZ00207.1| ATP-dependent DNA helicase RecG [Streptococcus oralis Uo5] Length = 671 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 239/663 (36%), Positives = 376/663 (56%), Gaps = 25/663 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL K S +A +H P KD A R+ ++EL Q+ L ++ + Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQSLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ ++ + + +PF+ T++QE ++++IL DM + M R+LQGDVGSG Sbjct: 226 NRVQGSGLVLDWSQEKVTAVKETLPFTLTQAQEKSLREILADMKSDHHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QA +M P ILA+QH+E +K + ++ ++TG++ A +R Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLKNLFPDLKLA--LLTGSLKAAEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LE IA G+ IIGTHAL QD + Y +L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 EVLETIAKGEVDFIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRVLREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T I ++ +V+ L+ + +G +A Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + +A++HG+M +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQEFKERKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + + Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642 Query: 664 KHI 666 +I Sbjct: 643 SYI 645 >gi|322375696|ref|ZP_08050208.1| ATP-dependent DNA helicase RecG [Streptococcus sp. C300] gi|321279404|gb|EFX56445.1| ATP-dependent DNA helicase RecG [Streptococcus sp. C300] Length = 671 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 240/674 (35%), Positives = 384/674 (56%), Gaps = 30/674 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKASLTGMK--VLAQVEED-----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL K S +A +H P KD A R+ ++EL Q+ L ++ + Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQSLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ +N + + ++PF+ T++QE ++++IL DM + M R+LQGDVGSG Sbjct: 226 NRVQGSGLVLNWSQEKVSAVKESLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QA +M P ILA+QH+E ++ + ++ ++TG++ +R Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPDLKLA--LLTGSLKAVEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LE IA G+A +IIGTHAL QD + Y +L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T I ++ +V+ L+ + +G +A Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + ++++HG+M +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVSLLHGKMKSDEKDQIMQDFKEQKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P +++ Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TES 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642 Query: 664 KHILT-----QDPD 672 +I + +DP+ Sbjct: 643 SYISSIEGWQEDPE 656 >gi|295399774|ref|ZP_06809755.1| ATP-dependent DNA helicase RecG [Geobacillus thermoglucosidasius C56-YS93] gi|294978177|gb|EFG53774.1| ATP-dependent DNA helicase RecG [Geobacillus thermoglucosidasius C56-YS93] Length = 689 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 236/667 (35%), Positives = 384/667 (57%), Gaps = 33/667 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G++ S L ++ T +LL + P + D + ++E+ + VT Sbjct: 15 PVTAIKGIGEETSEALREM------GITTIEELLMHVPYRYEDYEVK-DLAEVKHDEKVT 67 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G + S ++ ++ G IT++ F R LK +TV+GK Sbjct: 68 VEGKVYSEPSLTYYAKKKSRLAFRLLVGRYLITVVCFNRP--YLKQKLSINDTVTVSGKW 125 Query: 130 KKLKNRIIMVHPHYIFHNSQDVN-FPL---IEAVYSLPTGLSVDLFKKIIVEALSRL-PV 184 + H I N + P +E VYS+ ++V ++ I AL++ Sbjct: 126 DR--------HRQTITANELKMGALPQKRELEPVYSVRGSVTVKGMRRFIQLALTQYGEA 177 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 + + + + Q S EA IH PR ++ + AR RL Y+E L Q+ + +R Sbjct: 178 IIDPLPLSMRQTYRLISKQEAIRAIHFPRSHEELK---QARRRLVYEEFLLFQLKIHALR 234 Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 K Q + GI + + + +PF TK+Q+ +++IL DM RM R+LQGDVG Sbjct: 235 KVQREHSQGIAHSFSPEKLHDFIDRLPFPLTKAQQRVVREILTDMQSPYRMNRLLQGDVG 294 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA I + AAV +G Q +M P ILA+QH + ++ T + V ++T ++ Sbjct: 295 SGKTVVAAIVLYAAVLSGYQGALMVPTEILAEQHAQSLQTLFAPTDVTVALLTSSVKGKR 354 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 R++ LE++A G I++GTHAL Q+ + + KL LVI DEQHRFGV+QR L +K AP V Sbjct: 355 RKEILEQLACGTIDIVVGTHALIQEEVNFQKLGLVITDEQHRFGVEQRRILREKGQAPDV 414 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL +T+ G++D+S I E PAGRK ++T + + + V++ ++ + +G+ Sbjct: 415 LMMTATPIPRTLAITAFGEMDVSVIDEMPAGRKKVQTYWVKHHMFERVLDFMEKEIQKGR 474 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541 +AY ICP IEE ++ + ++ ++ + L ++ +I ++HGR+S +KE VM +F Sbjct: 475 QAYVICPLIEESEKLDVQNAIDVHSMLTHYYRGKYNIGLMHGRLSSEEKEEVMKAFSENR 534 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTV+EVG++V +A++++I +AE FGLAQLHQLRGRVGRG+E S CIL+ P S Sbjct: 535 IQVLVSTTVVEVGVNVPNATVMVIYDAERFGLAQLHQLRGRVGRGDEQSYCILIADPK-S 593 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660 + R+ ++ T DGF+++E+DL+ R G+ G KQSGMP+F +HD +LE+AR Sbjct: 594 ETGKERMRIMTETTDGFVLSEKDLQLRGPGDFFGTKQSGMPEFKFGDV-VHDYRILEVAR 652 Query: 661 KDAKHIL 667 DA ++ Sbjct: 653 NDAAKLV 659 >gi|268609076|ref|ZP_06142803.1| ATP-dependent DNA helicase RecG [Ruminococcus flavefaciens FD-1] Length = 678 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 246/689 (35%), Positives = 377/689 (54%), Gaps = 41/689 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFID-RHYRPKI-SEIS 65 LF+ + +GVGK K+ IN +L+++ P +++D R Y P ++I+ Sbjct: 5 LFSEIEYLKGVGKARGEKYRKLGINSP-------YELIYHIPRTYLDFRAYVPVAQAKIN 57 Query: 66 EERIVTITGYISQHSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEMLKNVF-FEG 120 E ++ +T Y Q+ R K DG +I ++ + NVF F+ Sbjct: 58 EYNVLKLTVY----KKMPPQRIRGGLVICKAAATDGMDDILIVVY-------NNVFGFQS 106 Query: 121 RKITVT----GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIV 176 K T GK+ R + P +I ++ V LI+ VY L GLSV++ + + Sbjct: 107 LKENETYYMYGKVSGNFLRREISAPVFI-SAAEKV---LIQPVYPLTQGLSVNMVRTNMK 162 Query: 177 EALSRLPVLP-EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235 +AL + P E + +++K + A IH P E + AR+RLA+DELL Sbjct: 163 QALELMRADPFETLPGAVMEKYDLCPLMTALENIHFPESE---EASEAARQRLAFDELLK 219 Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+ + LM+ + ++ ++ A +PF T Q+ A+ +++ D+ + M Sbjct: 220 LQLGMSLMKSRSRRSTAYKMD-SSISAAPFTEGLPFELTDDQKKAVSEVISDLCRDVPMN 278 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R+LQGDVGSGKT VA A + G QA +MAP ILA QHY + ++ + + V ++ Sbjct: 279 RLLQGDVGSGKTAVAAAACYFTAKNGAQAALMAPTEILASQHYRTLSEFLEPFGVKVCLL 338 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 TG++ + E+I G+ +I+GTHA+ Q ++Y L LVI DEQHRFGV QR L Sbjct: 339 TGSLTAKKKAVIREQILSGEIDVIVGTHAIIQKDVEYRALGLVITDEQHRFGVAQRAALA 398 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K +PH L+M+ATPIPRTL L GD+DIS IT+ P GRKP++T + + Sbjct: 399 EKGDSPHKLVMSATPIPRTLALIIYGDLDISAITQLPKGRKPVQTYAVTGKLRHRAFGFV 458 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 K L EG++AY +CP IE+ + F N+ S A++HGRM +KE VM Sbjct: 459 KARLDEGRQAYVVCPMIEDSESDLFAVKSYAENAAKGDLKGYSTALLHGRMRAAEKEKVM 518 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 SF++G ++LI TTV+EVG+DV +A++++IENAE FGL+QLHQLRGRVGRG+ SSCIL Sbjct: 519 KSFRDGEIQVLICTTVVEVGVDVPNAAVMVIENAERFGLSQLHQLRGRVGRGQYESSCIL 578 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 + S++ R+ ++ +T DGF I+EEDLK R G+ G Q G+P IA + Sbjct: 579 ITD-NTSEDCVKRMKIMSSTSDGFKISEEDLKMRGPGDFFGSAQHGLPPLKIADIACNME 637 Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRI 683 L+ A+ A+ +L DP L S +++++ Sbjct: 638 LMNKAQNCARELLEADPQLNSPENRALKM 666 >gi|222055696|ref|YP_002538058.1| ATP-dependent DNA helicase RecG [Geobacter sp. FRC-32] gi|221564985|gb|ACM20957.1| ATP-dependent DNA helicase RecG [Geobacter sp. FRC-32] Length = 770 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 245/699 (35%), Positives = 379/699 (54%), Gaps = 38/699 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L P+ +GVG K + L+K + D LF P + DR +S++S+ R Sbjct: 68 LQTPMQFIKGVGPKLAEQLAK------KGISVVEDALFLLPHRYEDRR---SLSKVSKLR 118 Query: 69 IVTITGYISQHSSFQLQK----RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124 + ++ SF+ + +R ++ D +G ITL +F +K + GRK Sbjct: 119 PGAHEVFYAEVLSFEAKSTKGGKRFLEVTAGDESGSITLKWFRFNPVFMKKTWRVGRKGV 178 Query: 125 VTGKIKKLKNRIIMVHPHYIFHN---------SQD-VNFPLIEAVYSLPTGLSVDLFKKI 174 TG++ + + + HP + + ++D +NF I VY L GL +K+ Sbjct: 179 FTGEVVQYGFQKEIHHPEVEWLDEGADLAALTARDPLNFGRILPVYPLTEGLHQKTLRKV 238 Query: 175 IVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLA 229 + E + R + + + ++++ + EA H P D + A + + Sbjct: 239 MKEVIDRFVIDVENHLPLGVMERHHLMPLDEALRETHFPGHDADLARLNNGATVAHKTFS 298 Query: 230 YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289 +DEL ++ L L R E GI V K +++L+ +PF T +Q + +I DM Sbjct: 299 FDELFFLELGLALKRSGIVLEQGIAFQVTHKYTRELLKLLPFHLTDAQRRVLSEIKNDMM 358 Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349 + M R++QGDVG GKTLVAL+A AVE Q IMAP ILA+QH+ I ++ Sbjct: 359 LPHPMHRLVQGDVGCGKTLVALMAALVAVENDYQVAIMAPTEILAEQHFLTIHRWCDALG 418 Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409 I V ++T M + LE IA G+ I+IGTHA+ Q+ +++ +L L I+DEQHRFGV Sbjct: 419 IKVSLLTSGMKGKAKSAVLEEIAAGRTSIVIGTHAVIQEKVEFNRLGLGIIDEQHRFGVL 478 Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469 QR L +K P +L+MTATPIPRTL +T GD+ +S I E P GR P++T + +R Sbjct: 479 QRGILKRKGINPDILVMTATPIPRTLAMTVFGDLSLSVIDELPPGRTPVETRVAFESRRS 538 Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS------IAIIHG 523 +V ++ + +G++AY I P +EE ++S ++ + + EH + ++HG Sbjct: 539 QVYGIIREEVKKGRQAYIIYPLVEETEKSELKAAAQ----MAEHLARDVFPELRVGLLHG 594 Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583 RM +KESVM +FK +L+ATTVIEVGIDV +A+++++E+AE FGL+QLHQLRGRV Sbjct: 595 RMKPEEKESVMGAFKARETDILVATTVIEVGIDVPNATVMVVEHAERFGLSQLHQLRGRV 654 Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643 GRG S CILL LS++ RL V+++T DGF IAE DL+ R G+ LG +Q+G+P Sbjct: 655 GRGSGQSRCILLSSGQLSEDGEKRLRVMESTNDGFRIAEADLEIRGPGDFLGTRQAGLPD 714 Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682 F +A +LE AR +A ++ +DP L +R Sbjct: 715 FRVANILRDGRILEAARGEAFAVVERDPGLVDGENAGLR 753 >gi|311068108|ref|YP_003973031.1| ATP-dependent DNA helicase RecG [Bacillus atrophaeus 1942] gi|310868625|gb|ADP32100.1| ATP-dependent DNA helicase RecG [Bacillus atrophaeus 1942] Length = 681 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 237/652 (36%), Positives = 373/652 (57%), Gaps = 24/652 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGE 100 DLL Y P + D R + ++ + VT+ G + S +KR L G Sbjct: 32 DLLNYFPYRYDDYELR-DLEDVKHDERVTVEGKVHSEPSLTYYGKKRNRLTFRLLVGHYL 90 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160 IT + F R LK G +T++GK K + + IMV N IE VY Sbjct: 91 ITAVCFNRP--YLKKKLSLGSVVTISGKWDKHR-QTIMVQE---LKNGPHQEDKSIEPVY 144 Query: 161 SLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 S+ ++V + ++ I +ALS+ L + + + + L P +A +H P + + Sbjct: 145 SVKENVTVKMMRRFIQQALSQYLDTMSDPLPEKLRLHYKLPDYHQALKTMHQPETRESLK 204 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQE 278 AR R Y+E L Q+ + RK +++ GI + + + ++PF T +Q Sbjct: 205 ---QARRRFVYEEFLLFQLKMQAFRKAEREQSQGIKHHFSNEELMSFVESLPFPLTNAQS 261 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 ++DI DMS RM R+LQGDVGSGKT VA IA+ AA+ +G Q +M P ILA+QH Sbjct: 262 RVLRDITADMSSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQHA 321 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + +N + + ++T ++ RR+ LER+ G I++GTHAL QD +++ L LV Sbjct: 322 DSLVALFENWNVNIALLTSSVKGKRRRELLERLQAGDIDILVGTHALIQDEVEFKALGLV 381 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I DEQHRFGV+QR KL K P VL MTATPIPRTL +T G++D+S I E PAGRK I Sbjct: 382 ITDEQHRFGVEQRKKLRNKGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKQI 441 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-- 516 +T + + +D ++ ++ + +G++AY ICP IEE + + ++ ++ +N L E + Sbjct: 442 ETYWVKHDMLDRILSFIEKEVRQGRQAYIICPLIEESDKLDVQNAIDVYNMLSEVYRGKW 501 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 ++ ++HG++ +K+ VM F C++L++TTV+EVG++V +A+I++I +A+ FGL+QL Sbjct: 502 NVGLMHGKLHSDEKDQVMREFSANECQILVSTTVVEVGVNVPNATIMVIYDADRFGLSQL 561 Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636 HQLRGRVGRGE S CIL+ P S+ R+ ++ T DGF ++E+DL+ R G+ G Sbjct: 562 HQLRGRVGRGEYQSFCILMADPK-SETGKERMRIMSETNDGFELSEKDLELRGPGDFFGK 620 Query: 637 KQSGMPKFLIAQPELHD-SLLEIARKDAKHILT-----QDPDLTSVRGQSIR 682 KQSGMP+F +A +HD LE AR+DA +++ +P+ ++R Q ++ Sbjct: 621 KQSGMPEFKVADM-VHDYRALETARQDAADLVSSEAFWNEPEYQALREQLLK 671 >gi|312279039|gb|ADQ63696.1| ATP-dependent DNA helicase recG, transcription-repair coupling factor, putative [Streptococcus thermophilus ND03] Length = 672 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 247/673 (36%), Positives = 388/673 (57%), Gaps = 34/673 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEISEE 67 L +P++ +G G K + +K+ + DLL Y P + D ++ K I E+ + Sbjct: 4 LDSPIADLKGFGPKSAEKFTKL------DLHTVGDLLLYFPFRYED--FKSKSIFELMDG 55 Query: 68 RIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 ITG + ++ Q KR + G I + FF + L + F G ++ + Sbjct: 56 EKAVITGTVVTPANVQYYGFKRNRLSFKIKQGEAVIAINFFNQP--YLVDKFEVGAEVAI 113 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS-VDLFKKIIVEALS-RLP 183 GK + K+ + + + H D ++ VY + G+S L K I V S L Sbjct: 114 FGKWDRKKSAVTGMK--VLAHVEDD-----MQPVYHVAQGVSQAQLIKAIKVAFDSGALN 166 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 +L E + + L+ K EA ++H P KD A R+ ++EL Q+ L ++ Sbjct: 167 LLEESLPQVLMDKYRLMGRQEAVRVMHFP---KDLAEYKQALRRIKFEELFYFQMNLQVL 223 Query: 244 RKQFKKEI-GIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 + + K E G+ I+ E KI KI +PF TK+QE ++ +IL DM M R+LQGD Sbjct: 224 KAENKSETNGLAISYDEVKIKAKI-ATLPFPLTKAQERSLSEILADMKSGAHMNRLLQGD 282 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT++A +AM A AG Q+ +M P ILA+QHY+ +K +++ ++T M Sbjct: 283 VGSGKTVIASLAMYGAYTAGLQSALMVPTEILAEQHYQSLKGLFPELKVV--LLTSGMKM 340 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 A ++ AL +I G+A +I+GTH+L QD++ Y+KL LVI DEQHRFGV QR +K P Sbjct: 341 ADKKVALSKIESGEAQMIVGTHSLIQDAVIYHKLGLVITDEQHRFGVNQRRIFREKGDNP 400 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPRTL +T+ G++D+S I + PAGRK I T + ++D V+ +K L + Sbjct: 401 DVLMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKTIITRWVKHEQLDTVLTWIKSELEK 460 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKN 539 + Y+I P IEE + + ++ V L E F ++++A++HGRM + +K+ +M FK+ Sbjct: 461 DAQVYFISPLIEESESLDLKNAVALHQELTEFFGDSATVALMHGRMKNDEKDQIMQDFKD 520 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 ++L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG++ S C+L+ +P Sbjct: 521 KKSQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGDKQSYCVLVANPK 580 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 + R+ + T DGF++AEEDLK R GEI G +QSG+P+F +A ++LE A Sbjct: 581 -NDTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEA 639 Query: 660 RKDAKHILTQDPD 672 R A I++ DP+ Sbjct: 640 RCVASQIVS-DPN 651 >gi|290893059|ref|ZP_06556048.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL J2-071] gi|290557419|gb|EFD90944.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL J2-071] Length = 682 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 242/681 (35%), Positives = 386/681 (56%), Gaps = 25/681 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P + +G+G++ + L ++ + DLL+ P + D R +SE++ E +T Sbjct: 8 PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 I G + ++ R+ K+ T G++ + F+ + LK+ G +T++GK Sbjct: 61 IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKISVGETVTISGKWD 119 Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEW 188 K + ++ N ++ +E VY L L +K A S + E Sbjct: 120 KSRAQVTASKIKIGAVENEEE-----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEV 174 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247 I +LL+K EA I+H P K+ E AR R+ Y+E L Q+ + RK + Sbjct: 175 IPTNLLEKYQLMDRLEAVRILHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKIER 231 Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 +K GI IN + + + + ++PF TK+Q+ + +I DM M R+LQGDVGSGKT Sbjct: 232 EKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 291 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +VA IAM AA ++G Q+ +M P ILA+QH + + Q I V ++T ++ RR+ Sbjct: 292 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRREL 351 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 L + +G ++IGTHAL QD + Y++L LVI DEQHRFGV QR L +K P VL MT Sbjct: 352 LAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMT 411 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T+ G++D+S I E PAGRK I+T + +D VI ++ + +G + Y Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYI 471 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545 ICP IEE ++ + ++ ++ FN L + + ++HG++ DKE +M F + L Sbjct: 472 ICPLIEESEKLDVQNAIDVFNILQNKWDTKYIPGLMHGKLLPADKEQIMRDFNDKKIDCL 531 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ P ++ Sbjct: 532 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGK 590 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAK 664 R+ ++ T DGF+++E DL+ R G+ G KQSG+P+F +A +HD +LEIAR+DA Sbjct: 591 ERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQDAV 649 Query: 665 HILTQDPDLTSVRGQSIRILL 685 H++ ++ L + + + LL Sbjct: 650 HMIFEEDMLENKNYEKLVALL 670 >gi|224500042|ref|ZP_03668391.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes Finland 1988] gi|254829194|ref|ZP_05233881.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL N3-165] gi|254831587|ref|ZP_05236242.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes 10403S] gi|254899492|ref|ZP_05259416.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes J0161] gi|254912369|ref|ZP_05262381.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes J2818] gi|254936696|ref|ZP_05268393.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes F6900] gi|258601604|gb|EEW14929.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL N3-165] gi|258609293|gb|EEW21901.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes F6900] gi|293590351|gb|EFF98685.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes J2818] Length = 682 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 242/680 (35%), Positives = 386/680 (56%), Gaps = 23/680 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P + +G+G++ + L ++ + DLL+ P + D R +SE++ E +T Sbjct: 8 PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 I G + ++ R+ K+ T G++ + F+ + LK+ G +T++GK Sbjct: 61 IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKISVGETVTISGKWD 119 Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWI 189 K + ++ S++ +E VY L L +K A S + E I Sbjct: 120 KSRAQVTASKIKIGAVESEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEVI 175 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFK 248 +LL+K EA I+H P K+ E AR R+ Y+E L Q+ + RK + + Sbjct: 176 PGNLLEKYQLMDRLEAVRILHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKIERE 232 Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 K GI IN + + + + ++PF TK+Q+ + +I DM M R+LQGDVGSGKT+ Sbjct: 233 KSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKTV 292 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VA IAM AA ++G Q+ +M P ILA+QH + + Q I V ++T ++ RR+ L Sbjct: 293 VASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRRELL 352 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428 + +G ++IGTHAL QD + Y++L LVI DEQHRFGV QR L +K P VL MTA Sbjct: 353 AMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMTA 412 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488 TPIPRTL +T+ G++D+S I E PAGRK I+T + +D VI ++ + +G + Y I Sbjct: 413 TPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYII 472 Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLI 546 CP IEE ++ + ++ ++ FN L + + ++HG++ DKE +M F + L+ Sbjct: 473 CPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNDKKIDCLV 532 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 +TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ P ++ Sbjct: 533 STTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGKE 591 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKH 665 R+ ++ T DGF+++E DL+ R G+ G KQSG+P+F +A +HD +LEIAR+DA H Sbjct: 592 RMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQDAVH 650 Query: 666 ILTQDPDLTSVRGQSIRILL 685 ++ ++ L + + + LL Sbjct: 651 MIFEEDMLENKNYEKLVALL 670 >gi|217964036|ref|YP_002349714.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes HCC23] gi|217333306|gb|ACK39100.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes HCC23] Length = 682 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 239/666 (35%), Positives = 380/666 (57%), Gaps = 25/666 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P + +G+G++ + L ++ + DLL+ P + D R +SE++ E +T Sbjct: 8 PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 I G + ++ R+ K+ T G++ + F+ + LK+ G +T++GK Sbjct: 61 IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKISVGETVTISGKWD 119 Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEW 188 K + ++ N ++ +E VY L L +K A S + E Sbjct: 120 KSRAQVTASKIKIGAVENEEE-----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEV 174 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247 I +LL+K EA I+H P K+ E AR R+ Y+E L Q+ + RK + Sbjct: 175 IPSNLLEKYQLMDRLEAVRILHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKIER 231 Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 +K GI IN + + + + ++PF TK+Q+ + +I DM M R+LQGDVGSGKT Sbjct: 232 EKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 291 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +VA IAM AA ++G Q+ +M P ILA+QH + + Q I V ++T ++ RR+ Sbjct: 292 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRREL 351 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 L + +G ++IGTHAL QD + Y++L LVI DEQHRFGV QR L +K P VL MT Sbjct: 352 LAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMT 411 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T+ G++D+S I E PAGRK I+T + +D VI ++ + +G + Y Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYI 471 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545 ICP IEE ++ + ++ ++ FN L + + ++HG++ DKE +M F + L Sbjct: 472 ICPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNDKKIDCL 531 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ P ++ Sbjct: 532 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGK 590 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAK 664 R+ ++ T DGF+++E DL+ R G+ G KQSG+P+F +A +HD +LEIAR+DA Sbjct: 591 ERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQDAV 649 Query: 665 HILTQD 670 H++ ++ Sbjct: 650 HMIFEE 655 >gi|47096532|ref|ZP_00234122.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes str. 1/2a F6854] gi|47015064|gb|EAL06007.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes str. 1/2a F6854] Length = 697 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 242/680 (35%), Positives = 386/680 (56%), Gaps = 23/680 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P + +G+G++ + L ++ + DLL+ P + D R +SE++ E +T Sbjct: 23 PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 75 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 I G + ++ R+ K+ T G++ + F+ + LK+ G +T++GK Sbjct: 76 IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKISVGETVTISGKWD 134 Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWI 189 K + ++ S++ +E VY L L +K A S + E I Sbjct: 135 KSRAQVTASKIKIGAVESEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEVI 190 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFK 248 +LL+K EA I+H P K+ E AR R+ Y+E L Q+ + RK + + Sbjct: 191 PGNLLEKYQLMDRLEAVRILHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKIERE 247 Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 K GI IN + + + + ++PF TK+Q+ + +I DM M R+LQGDVGSGKT+ Sbjct: 248 KSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKTV 307 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VA IAM AA ++G Q+ +M P ILA+QH + + Q I V ++T ++ RR+ L Sbjct: 308 VASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRRELL 367 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428 + +G ++IGTHAL QD + Y++L LVI DEQHRFGV QR L +K P VL MTA Sbjct: 368 AMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMTA 427 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488 TPIPRTL +T+ G++D+S I E PAGRK I+T + +D VI ++ + +G + Y I Sbjct: 428 TPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYII 487 Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLI 546 CP IEE ++ + ++ ++ FN L + + ++HG++ DKE +M F + L+ Sbjct: 488 CPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNDKKIDCLV 547 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 +TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ P ++ Sbjct: 548 STTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGKE 606 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKH 665 R+ ++ T DGF+++E DL+ R G+ G KQSG+P+F +A +HD +LEIAR+DA H Sbjct: 607 RMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQDAVH 665 Query: 666 ILTQDPDLTSVRGQSIRILL 685 ++ ++ L + + + LL Sbjct: 666 MIFEEDMLENKNYEKLVALL 685 >gi|261879120|ref|ZP_06005547.1| DNA helicase RecG [Prevotella bergensis DSM 17361] gi|270334216|gb|EFA45002.1| DNA helicase RecG [Prevotella bergensis DSM 17361] Length = 700 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 240/668 (35%), Positives = 381/668 (57%), Gaps = 23/668 (3%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG K LSK +N + DLL Y+P ++DR +I E+S E V + G I Sbjct: 14 GVGPKKKEILSKELNIHT-----WGDLLEYYPYKYVDRTKIYRIMELSGEMPFVQVKGKI 68 Query: 77 SQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 F + R+ + DG G + L++F + KN + G + V GK + R Sbjct: 69 LSFEEFPMSARKKRVVAHFTDGFGIVDLVWFRGAQYVYKN-YKVGEEYIVFGKPSVYQGR 127 Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVEALSRLP--VLPEW 188 HP ++ Y+ G+ +++ +SR+P + E Sbjct: 128 YQFAHPEIDRVADLKTEEMRMQPYYNTTETMKKRGMQSRAVERLTKTLVSRIPEGAIQEA 187 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248 + ++ + + S +A+ IH P+ D + A+ RL +EL Q+++L + + Sbjct: 188 LLPSMVSRLNLISREDAYRKIHYPKSLDDVQ---RAQVRLKLEELFYVQLSILRYASEHR 244 Query: 249 KEI-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 ++ G + G I + N+PF T++Q+ + +I DM ++M R+LQGDVGSGK Sbjct: 245 RKYKGYVFDKIGAIFNQFFHENLPFDLTQAQKRVMHEIRDDMRSGHQMNRLLQGDVGSGK 304 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366 TLVAL+ M A++ G QA IMAP ILA+QH + I+ + +N + VE++TG + R++ Sbjct: 305 TLVALMTMLIAIDNGFQACIMAPTEILAEQHLDTIRTFLRNMPVRVELLTGIVKGKKRKE 364 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLL 425 L+ +A G I++GTHA+ +D++Q+ +L + +VDEQHRFGV QR KL K+ PH+L+ Sbjct: 365 ILQNLAEGNIDILVGTHAIIEDTVQFKRLGMAVVDEQHRFGVAQRAKLWAKSENPPHILV 424 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T GD+D+S I E P GRKPI T+ N+ + ++ + EG++ Sbjct: 425 MTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIMTIHKYDNQTVSLYNGIRQQVREGRQV 484 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKL 544 Y + P IEE ++S+ +++ + + L E F ++ +HGRM +KES M F +G ++ Sbjct: 485 YIVFPLIEESEKSDLKNLEDGYKKLCEIFPEFRLSKVHGRMKSSEKESEMQKFVSGETQI 544 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S C+L+ LS + Sbjct: 545 LVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQSYCLLVTGYELSTET 604 Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDA 663 R+ ++ +T DGF IAE DLK R G++ G +QSG+ L IA L+++AR +A Sbjct: 605 RKRIDIMCDTNDGFRIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLVQLARNEA 664 Query: 664 KHILTQDP 671 + I+ DP Sbjct: 665 QKIIDDDP 672 >gi|283797869|ref|ZP_06347022.1| ATP-dependent DNA helicase RecG [Clostridium sp. M62/1] gi|291074560|gb|EFE11924.1| ATP-dependent DNA helicase RecG [Clostridium sp. M62/1] gi|295091919|emb|CBK78026.1| ATP-dependent DNA helicase RecG [Clostridium cf. saccharolyticum K10] Length = 722 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 233/674 (34%), Positives = 370/674 (54%), Gaps = 27/674 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID-RHYRPKISEISE---- 66 PL+ +GVG+K + SK+ N T +LL Y+P ++ R +P S + E Sbjct: 43 PLTAIKGVGEKTARLFSKL------NVTNVEELLHYYPRAYDAFREPQPVKSLVPETTAA 96 Query: 67 -ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 E ++T T + + S Q+ + L D TG + L ++ L++ G + Sbjct: 97 VEGVLTKTADVVRFSHLQVTM-----VHLRDETGTVQLNWY--NMPFLRSTLKAGERFVF 149 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 GK+ K + +++M P ++ VY GL K + +ALS + Sbjct: 150 RGKVAKKRGKLVMEQPEIYRPAQYSALVHSMQPVYGQTKGLGNKTIAKAVAQALSERELE 209 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 +++ + L +K A IH P+ + ++ R+RL +DE +++ L+++ Sbjct: 210 RDYMPERLREKYELAEYNFALEHIHFPKDEAELLFS---RKRLVFDEFFMFLLSVRLLKE 266 Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + + Q++ ++P+S TK+QE +K++ D+S M R++QGDVGSG Sbjct: 267 KKADTKSLYVMEPRPEVQRLKDSLPYSLTKAQEKVLKEVYADLSGGQVMNRLVQGDVGSG 326 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY--TQNTQIIVEIITGNMPQAH 363 KT++A++A+ A G Q +M P +LA+QH E +++ + ++TG+M Sbjct: 327 KTIIAILALLQAAYNGYQGALMVPTEVLARQHLESMEELFAAHGIEKKAILLTGSMTAKE 386 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 +R A ++I +A II+GTHAL Q+ + Y KL LVI DEQHRFGV QR L K T PHV Sbjct: 387 KRMAYQKIESHEADIIVGTHALIQEKVIYDKLALVITDEQHRFGVAQREMLGNKGTEPHV 446 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+M+ATPIPRTL + GD+DIS I E PA RKPIK ++ + ++ + G+ Sbjct: 447 LVMSATPIPRTLAIIIYGDLDISIIDELPANRKPIKNCVVGTDYRKNAYRFIEREAAAGR 506 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGT 541 +AY ICP +E + +VV+ L E+ S+ + +HG+M +K +M+ F G Sbjct: 507 QAYVICPMVEPSEMIEAENVVDYTKKLRENLPESVRVEYLHGKMKPKEKNLLMEQFAEGE 566 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTVIEVGI+V +A++++IENAE FGLAQLHQLRGRVGRG+E S CI++ + Sbjct: 567 IQVLVSTTVIEVGINVPNATVMMIENAERFGLAQLHQLRGRVGRGKEQSYCIMV-NASSD 625 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 + RL +L + DGF IA EDLK R G+I GI+QSG +F + LL+ + Sbjct: 626 EGIQKRLEILNKSNDGFFIASEDLKLRGPGDIFGIRQSGELEFKLGDIFTDADLLKTVSE 685 Query: 662 DAKHILTQDPDLTS 675 + + IL DPDL+ Sbjct: 686 EVREILDADPDLSG 699 >gi|325299884|ref|YP_004259801.1| ATP-dependent DNA helicase RecG [Bacteroides salanitronis DSM 18170] gi|324319437|gb|ADY37328.1| ATP-dependent DNA helicase RecG [Bacteroides salanitronis DSM 18170] Length = 699 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 249/681 (36%), Positives = 386/681 (56%), Gaps = 40/681 (5%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITG 74 +GVG + + L K +N + F DLL+Y P ++DR I EI + + G Sbjct: 12 LQGVGPQRAAVLEKELNIRS-----FKDLLYYFPYKYVDRSRLYYIHEIDGNMPYIQLRG 66 Query: 75 YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR-----KITVTGKI 129 I +F ++R +DGTG + L++F + LK F EG+ V GK Sbjct: 67 QILSFETFGEGRQRRLVGHFSDGTGVVDLVWF----QGLK--FVEGKYKAHEPYIVFGKP 120 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGL--------SVDLFKKIIVEALSR 181 RI + HP + ++ ++ Y+ + +V+ K + AL R Sbjct: 121 TVFNGRINIAHPDIDPADELVLSNMGLQPYYNTTEKMKRSNLNSHAVEKLMKNLFAALQR 180 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 V+ E + L+++ +++A + IH P+ + A+ RL ++EL Q+ +L Sbjct: 181 -EVIEETLSPQLIEQHRLMPLSDALHNIHFPQNP---DLLRRAQYRLKFEELFYVQLNIL 236 Query: 242 LM----RKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 R +F+ G+ G+I +N+PF T +Q+ IK++ +DM +M R Sbjct: 237 RYTLERRNKFR---GLVFGTVGEIFHTFYEQNLPFQLTGAQKRVIKEMRRDMKSGRQMNR 293 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 +LQGDVGSGKTLVAL+ M A++ G QA +MAP ILA QHYE I ++ + VE++T Sbjct: 294 LLQGDVGSGKTLVALMTMLIALDNGYQACMMAPTEILANQHYETITRFLAGMPVRVELLT 353 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 GN+ R L + G+ I+IGTHA+ +D++ + L LV++DEQHRFGV QR KL + Sbjct: 354 GNVKGKKRETILRDLVTGEVQILIGTHAVIEDTVNFSSLGLVVIDEQHRFGVAQRAKLWK 413 Query: 417 KATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 K T PHVL+MTATPIPRTL +T GD+D+S I E P GRKPI+T+ NR + + Sbjct: 414 KNTCPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTIHQFDNRRALLYAFI 473 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 + L EG++AY + P I+E ++ + +++ + + + E F ++ +HG+M +K++ M Sbjct: 474 RKQLQEGRQAYIVYPLIQESEKMDIKNLEDGYLHVCEAFPEYKVSKVHGKMKAAEKDAEM 533 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F ++L+ATTVIEVG++V +AS+++IENAE FGL+QLHQLRGRVGRG + S CIL Sbjct: 534 QRFVENETQILVATTVIEVGVNVPNASVMVIENAERFGLSQLHQLRGRVGRGADQSYCIL 593 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHD 653 + L++++ R+ ++ +T DGF IAE DLK R G++ G +QSG+ L IA Sbjct: 594 VTGYKLTEDTRKRIQIMVDTNDGFEIAEADLKLRGPGDLEGTQQSGVAFDLKIADIARDG 653 Query: 654 SLLEIARKDAKHILTQDPDLT 674 LL+ R+ A+H+L DP T Sbjct: 654 QLLQYVREIAEHLLEADPQGT 674 >gi|332981575|ref|YP_004463016.1| ATP-dependent DNA helicase RecG [Mahella australiensis 50-1 BON] gi|332699253|gb|AEE96194.1| ATP-dependent DNA helicase RecG [Mahella australiensis 50-1 BON] Length = 691 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 224/644 (34%), Positives = 369/644 (57%), Gaps = 21/644 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P+ +GVG + + L+K+ + D++++ P + DR IS ++V Sbjct: 9 PVQYIKGVGPRRARLLNKL------DIYTLADVIYHFPRDYEDRTEIMPISRWQSGQVVN 62 Query: 72 ITGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 I I+ + R KI + DGT +++ +K +++ F G+ + GK+ Sbjct: 63 IVCKIAGPPRRVKPRARLIISKIPIQDGTSSAYAVWYNQK--FIEDRFVPGKWYFMRGKV 120 Query: 130 KKLKNRIIMVHPHYIFHNSQDV--NFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VLP 186 I +++P + +S D N L+ +Y +S + + I+ L + Sbjct: 121 NIGYGEIQLLNPQWEEISSPDERGNEGLV-PIYPSTADMSQKILRNIVKNVLELVKGQWE 179 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR-K 245 E++ +L ++ I A N IH P A+ + AR RLA+DEL Q+ ++ K Sbjct: 180 EYLPIELRKRYDLAEINFAINNIHFPVNARSL---NIARRRLAFDELFCMQLGFYSIKGK 236 Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 +++G P + + +R +PF+ T +Q+ + +IL DMS M R++QGDVG G Sbjct: 237 NDVQKVGAPFRIHDIGLEAFIRRLPFALTGAQQRVLDEILADMSNTRPMNRLVQGDVGCG 296 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT++A++A+ A Q +MAP +LAQQH++ ++K+ I + +++GNM + + Sbjct: 297 KTILAVLALYVAASNCYQGAMMAPTEVLAQQHFQTLQKFFDGYDISIALLSGNMGENKKN 356 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LE I G+ +++GTHA+ QD++++++L LVI DEQHRFGV+QR L +K PHVL+ Sbjct: 357 EVLEAIKDGRIDVVVGTHAVIQDNVEFHRLGLVITDEQHRFGVRQRAVLEKKGGNPHVLV 416 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 M+ATPIPR++ L GD+D+S + E P GR+ ++T IP + D + + +S G +A Sbjct: 417 MSATPIPRSMALIFYGDLDVSIVDEMPPGRQQVETFFIPPSMRDRLYSFINQEISNGHQA 476 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEH--FTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y ICP +E+ + S E ++ L E F SI +IHG+MS DK VM++FKNG Sbjct: 477 YIICPLVEQSDAIDALSAQELYDQLKEKGIFGDSIGLIHGQMSANDKNEVMEAFKNGQIS 536 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +LI TTVIEVG+DV +A+++++ENAE FGLAQLHQLRGRVGRG+ S C L+ + S + Sbjct: 537 VLIGTTVIEVGVDVPNATVMVVENAERFGLAQLHQLRGRVGRGQHKSYCFLISNAGNS-D 595 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 + RL ++ DGF IAE+D++ R G++LG++Q G+ + +A Sbjct: 596 AGRRLKIMTKLHDGFKIAEQDMQIRGPGQLLGLQQHGISELKLA 639 >gi|312111714|ref|YP_003990030.1| ATP-dependent DNA helicase RecG [Geobacillus sp. Y4.1MC1] gi|311216815|gb|ADP75419.1| ATP-dependent DNA helicase RecG [Geobacillus sp. Y4.1MC1] Length = 705 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 236/667 (35%), Positives = 384/667 (57%), Gaps = 33/667 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G++ S L ++ T +LL + P + D + ++E+ + VT Sbjct: 31 PVTAIKGIGEETSEALREM------GITTIEELLMHVPYRYEDYEVK-DLAEVKHDEKVT 83 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G + S ++ ++ G IT++ F R LK +TV+GK Sbjct: 84 VEGKVYSEPSLTYYAKKKSRLAFRLLVGRYLITVVCFNRP--YLKQKLSINDTVTVSGKW 141 Query: 130 KKLKNRIIMVHPHYIFHNSQDVN-FPL---IEAVYSLPTGLSVDLFKKIIVEALSRL-PV 184 + H I N + P +E VYS+ ++V ++ I AL++ Sbjct: 142 DR--------HRQTITANELKMGALPQKRELEPVYSVRGSVTVKGMRRFIQLALTQYGEA 193 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 + + + + Q S EA IH PR ++ + AR RL Y+E L Q+ + +R Sbjct: 194 IIDPLPLSMRQTYRLISKQEAIRAIHFPRSHEELK---QARRRLVYEEFLLFQLKIHALR 250 Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 K Q + GI + + + +PF TK+Q+ +++IL DM RM R+LQGDVG Sbjct: 251 KVQREHSQGIAHSFSPEKLHDFIDRLPFPLTKAQQRVVREILTDMQSPYRMNRLLQGDVG 310 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA I + AAV +G Q +M P ILA+QH + ++ T + V ++T ++ Sbjct: 311 SGKTVVAAIVLYAAVLSGYQGALMVPTEILAEQHAQSLQTLFAPTDVTVALLTSSVKGKR 370 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 R++ LE++A G I++GTHAL Q+ + + KL LVI DEQHRFGV+QR L +K AP V Sbjct: 371 RKEILEQLACGTIDIVVGTHALIQEEVNFQKLGLVITDEQHRFGVEQRRILREKGQAPDV 430 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL +T+ G++D+S I E PAGRK ++T + + + V++ ++ + +G+ Sbjct: 431 LMMTATPIPRTLAITAFGEMDVSVIDEMPAGRKKVQTYWVKHHMFERVLDFMEKEIQKGR 490 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541 +AY ICP IEE ++ + ++ ++ + L ++ +I ++HGR+S +KE VM +F Sbjct: 491 QAYVICPLIEESEKLDVQNAIDVHSMLTHYYRGKYNIGLMHGRLSSEEKEEVMKAFSENR 550 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTV+EVG++V +A++++I +AE FGLAQLHQLRGRVGRG+E S CIL+ P S Sbjct: 551 IQVLVSTTVVEVGVNVPNATVMVIYDAERFGLAQLHQLRGRVGRGDEQSYCILIADPK-S 609 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660 + R+ ++ T DGF+++E+DL+ R G+ G KQSGMP+F +HD +LE+AR Sbjct: 610 ETGKERMRIMTETTDGFVLSEKDLQLRGPGDFFGTKQSGMPEFKFGDV-VHDYRILEVAR 668 Query: 661 KDAKHIL 667 DA ++ Sbjct: 669 NDAAKLV 675 >gi|261393122|emb|CAX50727.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis 8013] Length = 680 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 227/600 (37%), Positives = 340/600 (56%), Gaps = 7/600 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H + R+ + + D +G + L F + G++I G+IK M Sbjct: 65 HQEVTFKPRKQLIVQIADDSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP + L VY GL+ ++II AL P L + + LL + Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182 Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 P +AE+ ++H P + + T PA +RL +DELLA Q+++ L R++ Sbjct: 183 LPHLAESLRLLHLPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAA 242 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + +G + Q + + +PF+ T +QE + +I +DM+Q M R+LQGDVGSGKT+VA ++ Sbjct: 243 LGGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSA 302 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A+E+G Q +MAP ILA+QH+ K++ + I V + G++ + + +A ++A G Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 I +GTHALF D + ++ L L IVDEQHRFGV QRL L K H L+M+ATPIPRT Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I + P GR PIKT ++ R EV + +G++AYW+CP IEE Sbjct: 423 LAMSFFADLDVSVIDKLPPGRTPIKTRLVNNVRRTEVEGFVLGTCRKGRQAYWVCPLIEE 482 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ E L +I ++HGRM +K VM F +G +L+ATTVIEV Sbjct: 483 SETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEV 542 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +A++++IE+AE GLAQLHQLRGRVGRG S C+LL+ PLS+ + RL V+ Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYE 602 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA +DL R GE LG +QSG+P A+ E LLE AR+ A ++ Q+P++ Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQAREIAPILIEQNPEI 662 >gi|148242370|ref|YP_001227527.1| ATP-dependent DNA helicase RecG [Synechococcus sp. RCC307] gi|147850680|emb|CAK28174.1| ATP-dependent DNA helicase [Synechococcus sp. RCC307] Length = 836 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 242/684 (35%), Positives = 390/684 (57%), Gaps = 34/684 (4%) Query: 12 PLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70 PLS +G+G K + L+++ + C DL+ Y+P ++D +I + Sbjct: 141 PLSELKGIGPKLATRLAQLGLFC-------LEDLIGYYPRDYVDYSRLVRIQALVPGETA 193 Query: 71 TITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFF-----YRKTEML---KNVFFE 119 T+ + + +F K IL L D +G + + F + + L + ++ Sbjct: 194 TVVATVRRVHAFASPKNPNLAILELQLQDPSGRLRISKFMAGKRFTSSGWLHQQQRLYPP 253 Query: 120 GRKITVTGKIKKLKNRIIMVHP--HYIFHNSQDVNFPLIE---AVYSLPTGLSVDLFKKI 174 G I +G +K+ + I + P + + V P I +Y+L GL+ + ++ Sbjct: 254 GATIAASGLVKENRFGISLHDPLLEVLEGPASQVQSPEIGRLVPIYALTEGLTAERLRQA 313 Query: 175 IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234 + AL+ + P+ + + Q+ + + A+A + IH P + E R RL +DE L Sbjct: 314 VAAALAAVRPGPDPLPEPWRQQLTLVAKADARSGIHQP---SNREHLDACRRRLVFDEFL 370 Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKI--LRNI-PFSPTKSQESAIKDILQDMSQK 291 Q+ L R Q+++ P G I +++ RN+ PF T +QE + ++L DM Q Sbjct: 371 LLQLNLAQRRLQYRQRQA-PAVPAGAIGERLKAFRNLLPFQFTGAQERVLNELLADMGQP 429 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351 M R++QGDVGSGKT+VA+ A+ AA++AG Q MAP +LAQQHY + ++ + Sbjct: 430 KPMARLVQGDVGSGKTVVAIAALLAAIDAGLQGAFMAPTEVLAQQHYAKLCEWMPQLHVN 489 Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411 V ++TG+ P RR L+ +A+GQ H+++GTHA+ +D + + +L LV+VDEQHRFGV QR Sbjct: 490 VALLTGSTPAKQRRALLQDLANGQLHLLVGTHAVLEDPVDFARLGLVVVDEQHRFGVGQR 549 Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471 +L K PH+L MTATPIPRTL L+ GD+D+S+I P GR+PIKT ++ + + Sbjct: 550 NRLLSKGLQPHLLTMTATPIPRTLALSIHGDLDVSQIDALPPGRQPIKTAVLSSAQRPKA 609 Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDID 529 ++ ++EG++AY + P +EE ++ + RS V+ + L + + ++HGR+S + Sbjct: 610 DALIREQINEGRQAYVVLPLVEESEKLDLRSAVDEHSRLQQEVFPDLQVGLLHGRLSSAE 669 Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589 K+ +++F G +LL++TTV+EVG+DV +A++++I++AE FGLAQLHQLRGRVGRG Sbjct: 670 KQQAIEAFSRGETQLLVSTTVVEVGVDVPNATVMLIDHAERFGLAQLHQLRGRVGRGAAA 729 Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649 S C LL + S + RL VL + DGF IAE DL+ R GE+LG +QSG+P +A Sbjct: 730 SHC-LLVNDSSSAVAKQRLEVLARSNDGFEIAEMDLRLRGPGEVLGTRQSGLPDLALASL 788 Query: 650 ELHDSLLEIARKDAKHILTQDPDL 673 S+L+ AR+ A+ IL DP L Sbjct: 789 SDDGSVLDEARQTAQAILDADPTL 812 >gi|212550292|ref|YP_002308612.1| ATP-dependent DNA helicase RecG [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549425|dbj|BAG84090.1| ATP-dependent DNA helicase RecG [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 700 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 263/699 (37%), Positives = 395/699 (56%), Gaps = 35/699 (5%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID--RHYR-PKISEIS-EERIVT 71 +G+G + L K IN + D+L+Y P + D + YR KI EI+ E V Sbjct: 11 LQGIGSQKVEVLEKEINVVSCQ-----DMLYYFPYRYKDQRKSYRVDKIREINIEMSYVQ 65 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G I ++S L R I +DGTG I L++F + + + V GK++ Sbjct: 66 LKGRILRYSR-SLNYPRLSGIF-DDGTGTIELVWF-NSINWVPKYYKIDEEYYVYGKLRF 122 Query: 132 LKNRII-MVHPHYIFHNSQDVNFPLIEAVY---------SLPTGLSVDLFKKIIVEALSR 181 + + I +V+P ++ +Y SL + + ++I+ ++ Sbjct: 123 FRGKYISIVNPQIKTECKFCEGVTRMQGIYRTTAKMKKASLDSNTISQIMRQIL--EYTK 180 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 P L E + ++ K S+ EA + IH P+ E A+ RL ++EL Q+A L Sbjct: 181 EP-LSETLPTGIIDKCKLISLDEAIHNIHFPKSDNLLE---QAQYRLKFEELFYVQLANL 236 Query: 242 LMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L + KK++ G + G+ + N+PF T +QE +I QDM+ +M R++QG Sbjct: 237 LNPNRRKKQLDGFCFSKVGENFHFLKNNLPFELTHAQERVFNEIRQDMNTGKQMNRLVQG 296 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VAL+++ A++ G Q IM P ILA QHYE I + + + V ++TG+ Sbjct: 297 DVGSGKTVVALLSILTAIDNGFQGAIMVPTEILATQHYETISHLLEGSTVKVALLTGSTK 356 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-AT 419 R + L ++ G I+IGTHAL +DS+++ L LV+VDEQHRFGV QR KL K +T Sbjct: 357 NKVREEMLPKVKSGDIQILIGTHALIEDSVEFSNLGLVVVDEQHRFGVTQRAKLWDKNST 416 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 PHVL+MTATPIPRT+ +T GD++IS I E P GRKPI+T I + +++ E ++ L Sbjct: 417 PPHVLVMTATPIPRTMAMTVYGDLNISTIDELPPGRKPIRTYHIYDEKRNKMYEYVREQL 476 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538 GK+ Y + P IEE ++ + ++ E F ++ + F SI+ +HG+M +K M F Sbjct: 477 KIGKQVYIVYPLIEENEKIDLINLQEGFRAVSKVFPEYSISKVHGQMKPEEKNQEMQKFV 536 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 +G +++++TTVIEVGIDV +AS+IIIENAE FGL+QLHQLRGRVGRG E + CIL+ + Sbjct: 537 SGETQVMVSTTVIEVGIDVKNASVIIIENAERFGLSQLHQLRGRVGRGTEQAVCILITNY 596 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM-PKFL-IAQPELHDSLL 656 LSK + R++V+ T +GF +AEEDLK R G I+G KQSG PK L IA ++L Sbjct: 597 ELSKEAQKRINVMTKTNNGFEVAEEDLKLRGPGSIIGTKQSGFAPKKLRIANVSKDVNIL 656 Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695 AR IL DP L R ++ L+++N +Q Sbjct: 657 IRARNFVYEILNADPALKDPRCNLLK--QQLHKWNTKYQ 693 >gi|328466166|gb|EGF37323.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes 1816] Length = 682 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 242/680 (35%), Positives = 385/680 (56%), Gaps = 23/680 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P + +G+G++ + L ++ + DLL+ P + D R +SE++ E +T Sbjct: 8 PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 I G + ++ R+ K+ T G++ + F+ + LK+ G +T++GK Sbjct: 61 IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKISVGETVTISGKWD 119 Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWI 189 K + ++ S++ +E VY L L +K A S + E I Sbjct: 120 KSRAQVTASKIKIGAVESEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEVI 175 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFK 248 +LL+K EA I+H P K+ E AR R+ Y+E L Q+ + RK + + Sbjct: 176 PSNLLEKYQLMDRLEAVRILHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKIERE 232 Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 K GI IN + + + + ++PF TK+Q+ + +I DM M R+LQGDVGSGKT+ Sbjct: 233 KSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKTV 292 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VA IAM AA ++G Q+ +M P ILA+QH + + Q I V ++T ++ RR+ L Sbjct: 293 VASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRRELL 352 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428 + +G ++IGTHAL QD + Y++L LVI DEQHRFGV QR L +K P VL MTA Sbjct: 353 AMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMTA 412 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488 TPIPRTL +T+ G++D+S I E PAGRK I+T + +D VI ++ + +G + Y I Sbjct: 413 TPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYII 472 Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLI 546 CP I E ++ + ++ ++ FN L + + ++HG++ DKE +M F N L+ Sbjct: 473 CPLIGESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNNKKIDCLV 532 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 +TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ P ++ Sbjct: 533 STTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGKE 591 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKH 665 R+ ++ T DGF+++E DL+ R G+ G KQSG+P+F +A +HD +LEIAR+DA H Sbjct: 592 RMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQDAVH 650 Query: 666 ILTQDPDLTSVRGQSIRILL 685 ++ ++ L + + + LL Sbjct: 651 MIFEEDMLENKNYEKLVALL 670 >gi|289167442|ref|YP_003445711.1| branch migration of Holliday junctions, junction-specific DNA helicase,ATP-dependent DNA helicase, recG homolog [Streptococcus mitis B6] gi|288907009|emb|CBJ21843.1| branch migration of Holliday junctions, junction-specific DNA helicase,ATP-dependent DNA helicase, recG homolog [Streptococcus mitis B6] Length = 671 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 241/674 (35%), Positives = 385/674 (57%), Gaps = 30/674 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S KII A + L +L Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKIIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E I + LL K S +A +H P KD A R+ +++L Q+ L ++ + Sbjct: 169 ENIPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEKLFYFQMQLQTLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ ++ + + ++PF+ T +QE ++++IL DM + M R+LQGDVGSG Sbjct: 226 NRVQGSGLVLDWSQEKVTAVKESLPFALTPAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QAV+M P ILA+QH+E ++ + ++ ++TG++ A +R Sbjct: 286 KTVVAGLAMFAAVTAGYQAVLMVPTEILAEQHFESLQSLFPDLKLA--LLTGSLKAAEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LE IA G+A +IIGTHAL +D ++Y +L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 EVLESIAKGEADLIIGTHALIKDGVEYARLGLIIIDEQHRFGVGQRRVLREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T I ++ +V+ L+ + +G ++ Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQS 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + +A++HG+M +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQDFKERKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + + Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642 Query: 664 KHILT-----QDPD 672 +I + +DP+ Sbjct: 643 SYISSIEAWQEDPE 656 >gi|307571393|emb|CAR84572.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes L99] Length = 697 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 239/666 (35%), Positives = 380/666 (57%), Gaps = 25/666 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P + +G+G++ + L ++ + DLL+ P + D R +SE++ E +T Sbjct: 23 PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 75 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 I G + ++ R+ K+ T G++ + F+ + LK+ G +T++GK Sbjct: 76 IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKISVGETVTISGKWD 134 Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEW 188 K + ++ N ++ +E VY L L +K A S + E Sbjct: 135 KSRAQVTASKIKIGAVENEEE-----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEV 189 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247 I +LL+K EA I+H P K+ E AR R+ Y+E L Q+ + RK + Sbjct: 190 IPSNLLEKYQLMDRLEAVRILHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKIER 246 Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 +K GI IN + + + + ++PF TK+Q+ + +I DM M R+LQGDVGSGKT Sbjct: 247 EKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 306 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +VA IAM AA ++G Q+ +M P ILA+QH + + Q I V ++T ++ RR+ Sbjct: 307 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRREL 366 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 L + +G ++IGTHAL QD + Y++L LVI DEQHRFGV QR L +K P VL MT Sbjct: 367 LAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMT 426 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T+ G++D+S I E PAGRK I+T + +D VI ++ + +G + Y Sbjct: 427 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYI 486 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545 ICP IEE ++ + ++ ++ FN L + + ++HG++ DKE +M F + L Sbjct: 487 ICPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNDKKIDCL 546 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ P ++ Sbjct: 547 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGK 605 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAK 664 R+ ++ T DGF+++E DL+ R G+ G KQSG+P+F +A +HD +LEIAR+DA Sbjct: 606 ERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQDAV 664 Query: 665 HILTQD 670 H++ ++ Sbjct: 665 HMIFEE 670 >gi|295706317|ref|YP_003599392.1| ATP-dependent DNA helicase RecG [Bacillus megaterium DSM 319] gi|294803976|gb|ADF41042.1| ATP-dependent DNA helicase RecG [Bacillus megaterium DSM 319] Length = 682 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 238/658 (36%), Positives = 372/658 (56%), Gaps = 35/658 (5%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSF----QLQKRRPYKILLNDGT 98 DLL + P + D + ++E + VT+ G + S + + R +++L+N Sbjct: 33 DLLEHFPYRYEDYELK-DLAEAKHDEKVTVEGKVHSVPSLTYYGKKRSRLTFRLLVNRYL 91 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP---- 154 IT+ F R K+ + +TVTGK + + I N Q++ F Sbjct: 92 --ITVTCFNRP--YYKSKLEIDQTVTVTGKWDQHRQTI----------NLQELQFSPFVK 137 Query: 155 --LIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHN 211 IE VYS+ L+V +K + AL + + + + + + EA IH Sbjct: 138 NQTIEPVYSVKGSLTVKGMRKFVSLALKNYGSSIQDMLPASIRSRYKLVTREEAVRSIHL 197 Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIP 270 PR +D + AR R Y+E L Q+ + +RK+ ++E G+ + +P Sbjct: 198 PRDHEDLK---QARRRFVYEEFLLFQLKMQALRKREREETPGMKQAFDSTELVNFTNLLP 254 Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T +Q+ + +I DM RM R+LQGDVGSGKT+VA +A+ A V AG Q +M P Sbjct: 255 FPLTNAQKRVVNEITHDMKSPYRMNRLLQGDVGSGKTVVAAVALYATVLAGHQGALMVPT 314 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 ILA+QH E + + I V ++TG++ RR+ L+R+ G H+++GTHAL QD + Sbjct: 315 EILAEQHAESLTAMLEKVGISVGLLTGSVKGKARRELLQRVKDGDVHVLVGTHALIQDEV 374 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 Y L LVI DEQHRFGV QR L +K +P VL MTATPIPRTL +T G++D+S I E Sbjct: 375 IYSSLGLVITDEQHRFGVGQRRVLREKGESPDVLFMTATPIPRTLAITVFGEMDVSIIDE 434 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 PAGRK I+T + + ++ ++ ++ + +G++AY ICP IEE + + ++ ++ +L Sbjct: 435 MPAGRKAIETYWVKHDMLERILHFVEKEIHDGRQAYVICPLIEESDKLDVQNAIDVHATL 494 Query: 511 HEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 +F +S+ ++HGR+S +KE VM F ++L++TTV+EVG++V +A++++I +A Sbjct: 495 AHYFNGKASVGLMHGRLSADEKEEVMKQFSVNDVQILVSTTVVEVGVNVPNATVMVIYDA 554 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628 E FGL+QLHQLRGRVGRG+ S CILL P S+ R++++ T DGF+++E DL+ R Sbjct: 555 ERFGLSQLHQLRGRVGRGDAQSYCILLADPK-SEVGKERMTIMTETNDGFVLSERDLELR 613 Query: 629 KEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685 G+ G KQSGMP+F +A +HD LE+AR+DA ++ D T + +RI L Sbjct: 614 GPGDFFGRKQSGMPEFKVADM-VHDYRALEVAREDAAKLVNSDSFWTEDQFALLRIQL 670 >gi|332664350|ref|YP_004447138.1| ATP-dependent DNA helicase RecG [Haliscomenobacter hydrossis DSM 1100] gi|332333164|gb|AEE50265.1| ATP-dependent DNA helicase RecG [Haliscomenobacter hydrossis DSM 1100] Length = 726 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 247/685 (36%), Positives = 390/685 (56%), Gaps = 29/685 (4%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 N L +P+ +GVG K L K + F DLLF +PS +ID+ I++++E Sbjct: 27 NILDSPIEYLKGVGPKKGELLRKELGVAT-----FGDLLFAYPSRYIDKTQFHHIADLTE 81 Query: 67 ER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 + V + G + + S+ ++ D +G I+L++F + + K + G++ + Sbjct: 82 DSGSVQLKGVLRRFSTEGEGRKTRLVGQFRDESGAISLVWFTGISWLQKQLII-GQEYVI 140 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVN--------FPLIEAVYSLPTGLSVDLFKKIIVE 177 G++ K+ + HP ++++ +P E + + GL +++I Sbjct: 141 YGRVNAFKDAYSIPHPEMEVVSTENTQTATAFAPVYPSTEKLNA--QGLDAKSRRRLIKL 198 Query: 178 ALSRL-PV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235 L ++ P LPE + +++K FPS E+ +IH PR + + ++ RL ++EL Sbjct: 199 LLEKIEPAQLPETLPAYVVKKFHFPSRFESILLIHFPRTEDELKAST---NRLKFEELFF 255 Query: 236 GQIALLLMRKQFKKEI-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNR 293 Q+ LL ++++ K E+ G G +N +PF T +Q+ +K+I +D + Sbjct: 256 LQLRLLQIKRRRKDEVKGYVFEKIGDFFNNFYQNKLPFELTNAQKRVLKEIRRDFGLGIQ 315 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R++QGDVGSGKT+VAL+AM A++ G Q +MAP ILAQQH+ I Y Q++ + V Sbjct: 316 MNRLVQGDVGSGKTMVALLAMLMALDNGFQTCMMAPTEILAQQHFISISNYLQDSPVEVA 375 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++G++ R+ LER+A G+ HI+IGTHAL +D + + L L I DEQHRFGV QR Sbjct: 376 FLSGSIKGKARKHILERLAAGEIHILIGTHALIEDWVVFKNLGLAITDEQHRFGVAQRAA 435 Query: 414 LTQKATA--PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471 L +K PHVL+MTATPIPRTL +T GD+DIS I E P GRK I T+ N V Sbjct: 436 LWKKNKPFPPHVLVMTATPIPRTLAMTLYGDLDISVIDELPPGRKDIVTLHRTENHRLRV 495 Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDI 528 I ++ ++ G++ Y + P IEE ++ + ++++ + ++ F + I+I+HG+M Sbjct: 496 IGFMREQIALGRQVYIVYPMIEESEKMDLQNLMSGYEAISREFPTPEFQISILHGKMKAA 555 Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588 DK+ M F G ++++ATTVIEVG++V +AS+++IEN E FGL+QLHQLRGRVGRG E Sbjct: 556 DKDFEMQRFVRGETQIMVATTVIEVGVNVPNASVMVIENTERFGLSQLHQLRGRVGRGAE 615 Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648 S C+L+ LSK+S R+ + T +GF IAE DLK R G++ G +QSG+ +A Sbjct: 616 QSYCLLMSSFKLSKDSKERIQTMVRTNNGFEIAEADLKLRGPGDLEGTQQSGIVNLRLAD 675 Query: 649 PELHDSLLEIARKDAKHILTQDPDL 673 +L AR+ A IL DP L Sbjct: 676 LAKDGKILAAAREVAARILDDDPYL 700 >gi|312877022|ref|ZP_07736995.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor lactoaceticus 6A] gi|311796163|gb|EFR12519.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor lactoaceticus 6A] Length = 679 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 230/613 (37%), Positives = 363/613 (59%), Gaps = 19/613 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS-QHSSFQLQKRRPYKILLNDGTGEI 101 DLL++ P ++D KI E+ + I + ++ + + + + KI + D TG + Sbjct: 32 DLLWHIPRKYLDYSRLKKIRELCDGEIESFVAKVAGKPVEIETRSVKVIKIPVEDSTGVV 91 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161 T ++F + + +KNV EG +GKI++ I + +P + ++ Q ++ I VY+ Sbjct: 92 TTVWFNQ--DYIKNVLKEGEIFCFSGKIERKGFYIEVKNPEFEKYDQQLLHTGRIVPVYN 149 Query: 162 LPTGLSVDLFKKIIVEALSR-----LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216 GLS + + I+ L + + ++P +I QK + I A IH P Sbjct: 150 STEGLSQKVIRNIVNNLLHQVDGMLIDIIPPYIR----QKYNLSDINFAIKNIHFPENKL 205 Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276 E AR+RL ++E Q++LLL+++ +K GI I ++ + +PF T++ Sbjct: 206 SLEL---ARKRLVFEEFYLFQLSLLLLKENIEKNEGIKIENAQSSLKEFEKLLPFELTEA 262 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q+ + +I QD+ +M R++QGDVG GKT+VAL + A ++AG Q +MAP +LA Q Sbjct: 263 QKRVLAEIAQDLESTKQMNRLIQGDVGCGKTVVALASAYATIKAGYQVALMAPTEVLALQ 322 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 HY KKY N + V ++ G+ P+ + L+ + HG ++IGTHAL QD +++ L Sbjct: 323 HYNECKKYFGN-KFNVRLLIGSTPKKEKEIILKELEHGLCKMVIGTHALIQDEVKFKNLG 381 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 L I DEQHRFGV QR++LT+K ++P++L+MTATPIPRTL L GD+DIS I + P GRK Sbjct: 382 LAITDEQHRFGVIQRVELTKKGSSPNILVMTATPIPRTLSLVLYGDLDISIIDQLPPGRK 441 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-- 514 I T + + V +K L EG++ YWICP IEE + N +S VE SL E F Sbjct: 442 KILTYAVDESFRQRVYNFIKKQLDEGRQVYWICPLIEESETLNAKSAVEFAKSLKEGFFK 501 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 ++ +HG++S +++ +++ FK+G +L++TTV+EVGI+V +A++++IENAE FGLA Sbjct: 502 DYNVGCLHGKLSAKERDKILNDFKDGHIHILVSTTVVEVGINVPNATVMVIENAERFGLA 561 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRGE S CI L++ S+ + R+ + +++GF IAE DLK R G++ Sbjct: 562 QLHQLRGRVGRGEHQSYCI-LFNQSDSEIAKKRMIAITRSQNGFEIAEMDLKLRGPGDLF 620 Query: 635 GIKQSGMPKFLIA 647 G KQ G+ F +A Sbjct: 621 GTKQHGIMNFKVA 633 >gi|15674226|ref|NP_268401.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. lactis Il1403] gi|12725313|gb|AAK06342.1|AE006453_6 ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. lactis Il1403] Length = 666 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 242/644 (37%), Positives = 366/644 (56%), Gaps = 28/644 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGE 100 DLL Y P + D R + E+ + TI G + ++ Q KR + +G Sbjct: 31 DLLLYFPFRYEDFASR-SVFELVDGEKATIIGTVVTPANVQYYGFKRNRLSFKIKEGEAV 89 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160 + + FF + L + G++I V GK ++ K +++ + + D +E VY Sbjct: 90 VAVSFFNQP--YLADKVEVGKEIAVYGKWEQAKQQLMGMK---VVAQVDDG----LEPVY 140 Query: 161 SLPTGLSVDLFKKIIVEALSR--LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 L G+ K+I + L LPE + + L++K + EA +H P +D Sbjct: 141 HLAAGMKQSQLVKVIHQVFESDLLSELPENLPEFLIKKYRLMNRQEAVLAMHFP---EDM 197 Query: 219 EWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKS 276 E A R+ ++EL Q+ L L K+ G+ + E G+I QKI +PF T + Sbjct: 198 EAHKQALRRVKFEELFMFQLKLQALKNKEKSGRAGLEVVFEQGEIDQKI-SELPFELTGA 256 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q SA+ +IL DM M R+LQGDVGSGKT+VA +AM AA A QA IM P ILA+Q Sbjct: 257 QLSALSEILTDMKSPYHMNRLLQGDVGSGKTVVASLAMYAACLANFQAAIMVPTEILARQ 316 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 H+ +K QI ++ + A RR+ L + G H+++GTHAL Q+ + +Y L Sbjct: 317 HFANLKALFPELQI--SLLVSGLKVAERREILADLVSGHTHMVVGTHALIQEGVNFYNLG 374 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 LVI DEQHRFGV QR L +K P VL+MTATPIPRTL +T+ GD+D+S I E P GR+ Sbjct: 375 LVITDEQHRFGVNQRKILREKGQNPDVLMMTATPIPRTLAITAFGDMDVSIIDELPKGRQ 434 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515 PI T + + EV+ +K +++ + Y+I P IEE + + ++ F L+E+F Sbjct: 435 PITTRWVKHEQFSEVLSWIKAEVAKDSQVYFISPLIEESETLDLKNAEALFAELNEYFGL 494 Query: 516 -SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + I ++HG+M + +K+ +M FK +L++TTVIEVG+DV +A+I++I +A+ FGL+ Sbjct: 495 FAKIGLLHGKMKNDEKDQIMQEFKAKKLDILVSTTVIEVGVDVPNATIMVIMDADRFGLS 554 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG + S IL+ +P S + R+ ++ T++GF++AEEDLK R GEI Sbjct: 555 QLHQLRGRVGRGTKKSYAILVANPK-SDSGKQRMKIMTETQNGFILAEEDLKMRGSGEIF 613 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD---PDLTS 675 G++QSG+P+F+ A ++LE+ARK+A I PDL + Sbjct: 614 GLRQSGLPEFIAADLVNDYNILEVARKEAVEIFKNADEFPDLIA 657 >gi|150390531|ref|YP_001320580.1| ATP-dependent DNA helicase RecG [Alkaliphilus metalliredigens QYMF] gi|149950393|gb|ABR48921.1| ATP-dependent DNA helicase RecG [Alkaliphilus metalliredigens QYMF] Length = 686 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 241/662 (36%), Positives = 382/662 (57%), Gaps = 25/662 (3%) Query: 17 RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76 +GVG K + L ++ N ++L++ P + DR K+S + VTI G I Sbjct: 13 KGVGPKKAARLKRL------NIETVQEMLYHFPRDYDDRRNTKKVSHLVAGEKVTIYGRI 66 Query: 77 SQHSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 + Q+ K R K+ + D TG ++++FF + LK G ++ V GK+K Sbjct: 67 IEEP--QISKIRKGLSLTKVKMRDDTGSVSVIFFNQP--FLKKNLTMGTEVMVNGKVKVG 122 Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKD 192 + + +P Y S + +I +YS GL+ ++ + LS + PE++ ++ Sbjct: 123 YKGLEITNPVYERVESANSEAQVI-PIYSTTEGLTQKEIYRMQKQLLSTIKEFPEFLPEE 181 Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEI 251 +++K + A IH P+ +D + A+ RL +DE ++LL + ++ K++ Sbjct: 182 IIKKNRLCDLRFALCGIHFPKTTQDLKV---AKYRLVFDEFFLLNLSLLSIKKQFKKQKS 238 Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 I ++++ + + ++ +PF T +Q + +I D+ + M R++QGDVGSGKT+VA+ Sbjct: 239 SIALHIKDDVYE-FIQGLPFRLTSAQRKTLDEIFDDIQRTTPMNRLVQGDVGSGKTIVAV 297 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A+ V G Q +MAP ILA+QHYE +K+ I V ++ G+M + ++ + LERI Sbjct: 298 CALLNCVLNGYQGAMMAPTEILAEQHYEALKELLSPLNIEVGLLVGSMTKKNKERLLERI 357 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 A G+ I+ GTHAL Q+ + ++ L L + DEQHRFGV+QR L K PH+L+MTATPI Sbjct: 358 AKGEVQIVTGTHALIQEGVVFHNLALAVTDEQHRFGVRQRASLMNKGANPHILVMTATPI 417 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491 PRTL L GD+DIS I E P GRK IKT + ++V +K L G++AY +CP Sbjct: 418 PRTLALIVYGDLDISTIDELPPGRKSIKTFSASKKKREDVYTFIKKELDNGRQAYVVCPL 477 Query: 492 IEEKKESNFRSVVERFNSLHEH--FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548 +EE + S E +L H F S + ++HG+M +KE+VM++FK +L++T Sbjct: 478 VEESESIEAESATE-IATLFSHTIFKSYRVGLLHGKMPSKEKETVMNAFKRKEIDILVST 536 Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608 TVIEVG++V +A+++IIENAE FGLAQLHQLRGRVGRG+ S CIL+ H S + R+ Sbjct: 537 TVIEVGVNVPNATVMIIENAERFGLAQLHQLRGRVGRGDSQSYCILI-HNSKSDIAKERM 595 Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668 +++ T DGFLI+E+DL+ R GE GI+Q G+P+ IA H +L+I ++ K ++ Sbjct: 596 KIMEKTTDGFLISEKDLELRGPGEFFGIRQHGLPELKIANLFKHIKILKIVQQQIKELIE 655 Query: 669 QD 670 D Sbjct: 656 VD 657 >gi|327458866|gb|EGF05214.1| DNA helicase RecG [Streptococcus sanguinis SK1057] Length = 671 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 237/665 (35%), Positives = 380/665 (57%), Gaps = 29/665 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L L+ GVG K + +K+ ET DLL Y P + D + + ++ + Sbjct: 3 LHQSLTVLPGVGPKSAEKFAKL-----GLET-LQDLLLYFPFRYEDFKSK-NVLDLEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + ++ Q + ++ GE+ L + L + G I + GK Sbjct: 56 KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAIFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184 K K + + + +D ++ VY L G+S V L K + L L Sbjct: 116 WDKAKASLTGMK---LLTQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDLL-- 166 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 L E + + LL++ S EA +H P+ D++ A R+ ++EL Q+ L +++ Sbjct: 167 LEENLPQPLLERYQLVSRVEAVRAMHFPKDLADYK---QALRRVKFEELFYFQMRLQVLK 223 Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 ++ K G+ I+ + + +++PF T +QE ++ +ILQD+ M R+LQGDVG Sbjct: 224 RETKAVSNGLKIDWQLDAVAEKKQSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVG 283 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA +AM A AG Q+ +M P ILA+QH++ + + ++ + ++TG M A Sbjct: 284 SGKTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELNLALLTGGMKAAE 341 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L I +GQ +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR L +K P V Sbjct: 342 RRETLAAIENGQVDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDV 401 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T + +++ V++ LK L +G Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLKKELHKGA 461 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541 + Y+I P IEE + + ++ + L +F + +A++HG+M +KE++M FK G Sbjct: 462 QVYFISPLIEESEALDLKNAIALEEELTAYFGQQAKVALLHGKMKSEEKEAIMQDFKEGQ 521 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S +L+ +P + Sbjct: 522 TDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-T 580 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 ++ R+ ++ T DGFL+AEEDLK R GEI G +QSG+P+F +A +LE ARK Sbjct: 581 ESGKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640 Query: 662 DAKHI 666 A I Sbjct: 641 VASQI 645 >gi|222529215|ref|YP_002573097.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor bescii DSM 6725] gi|222456062|gb|ACM60324.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor bescii DSM 6725] Length = 679 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 232/614 (37%), Positives = 368/614 (59%), Gaps = 21/614 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS-QHSSFQLQKRRPYKILLNDGTGEI 101 DLL++ P ++D KI E+ + I + ++ + + + + KI + D TG + Sbjct: 32 DLLWHIPRKYLDYSRLKKIRELCDGEIESFVAKVAGKPVEIETRSVKIIKIPVEDSTGVV 91 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161 T ++F + + +KNV EG +GKI++ I + +P + ++ ++ I VY+ Sbjct: 92 TTVWFNQ--DYIKNVLKEGEVFCFSGKIERKGFYIEVKNPEFEKYDQHLIHTGRIVPVYN 149 Query: 162 LPTGLSVDLFKKIIVEALSR-----LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216 GLS + + I+ L + + ++P +I QK + I A IH P Sbjct: 150 STEGLSQKVIRNIVNNLLQQVDGMLIDIIPPYIR----QKYNLSEINFAIKNIHFPENKL 205 Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI-NVEGKIAQKILRNIPFSPTK 275 E AR+RL ++E Q++LLL+++ +K GI I NV+ + ++ + +PF T+ Sbjct: 206 SLEL---ARKRLVFEEFYLLQLSLLLLKENIEKNEGIKIENVQSSL-KEFEKLLPFELTE 261 Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 +Q+ + +I QD+ +M R++QGDVG GKT+VAL + A ++AG Q +MAP +LA Sbjct: 262 AQKRVLAEIAQDLESTKQMNRLIQGDVGCGKTVVALASAYATIKAGYQVALMAPTEVLAL 321 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 QHY KKY N + V ++ G+ P+ + L+ + HG ++IGTHAL QD +++ L Sbjct: 322 QHYNECKKYFDN-KFNVRLLIGSTPKKEKEIILKELEHGLCKMVIGTHALIQDDVKFKNL 380 Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 L I DEQHRFGV QR++LT+K ++P++L+MTATPIPRTL L GD+DIS I + P GR Sbjct: 381 GLAITDEQHRFGVIQRVELTKKGSSPNILVMTATPIPRTLSLVLYGDLDISIIDQLPPGR 440 Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF- 514 K I T + + V +K L+EG++ YWICP IEE + N +S VE SL E F Sbjct: 441 KKILTYAVDESFRQRVYNFIKKQLNEGRQVYWICPLIEESETLNAKSAVEFAKSLKEGFF 500 Query: 515 -TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 ++A +HG++S +++ +++ FK+G +L++TTV+EVGI+V +A++++IENAE FGL Sbjct: 501 KDYNVACLHGKLSVKERDKILNDFKDGHIHILVSTTVVEVGINVPNATVMVIENAERFGL 560 Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633 AQLHQLRGRVGRGE S CI L++ S+ + R+ + +++GF IAE DLK R G++ Sbjct: 561 AQLHQLRGRVGRGEYQSYCI-LFNQSDSEIAKKRMIAITRSQNGFEIAEMDLKLRGPGDL 619 Query: 634 LGIKQSGMPKFLIA 647 G KQ G+ F +A Sbjct: 620 FGTKQHGIMNFKVA 633 >gi|326407876|gb|ADZ64947.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. lactis CV56] Length = 666 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 242/644 (37%), Positives = 367/644 (56%), Gaps = 28/644 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGE 100 DLL Y P + D R + E+ + TI G + ++ Q KR + +G Sbjct: 31 DLLLYFPFRYEDFASR-SVFELVDGEKATIIGTVVTPANVQYYGFKRNRLSFKIKEGEAV 89 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160 + + FF + L + G++I V GK ++ K +++ + + D +E VY Sbjct: 90 VAVSFFNQP--YLADKVEVGKEIAVYGKWEQAKQQLMGMK---VVAQVDDG----LEPVY 140 Query: 161 SLPTGLSVDLFKKIIVEALSR--LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 L G+ K+I + L LPE + + L++K + EA +H P +D Sbjct: 141 HLTAGMKQSQLVKVIHQVFESDLLSELPENLPEFLIKKYRLMNRQEAVLAMHFP---EDM 197 Query: 219 EWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKS 276 E A R+ ++EL Q+ L L K+ G+ + E G+I QKI +PF T + Sbjct: 198 EAHKQALRRVKFEELFMFQLKLQALKNKEKSGRAGLEVVFEQGEIDQKI-SELPFELTGA 256 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q SA+ +IL DM M R+LQGDVGSGKT+VA +AM AA A QA IM P ILA+Q Sbjct: 257 QLSALSEILTDMKSPYHMNRLLQGDVGSGKTVVASLAMYAACLANFQAAIMVPTEILARQ 316 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 H+ +K QI ++ + A RR+ L + G H+++GTHAL Q+ + +Y L Sbjct: 317 HFANLKALFPELQI--SLLVSGLKVAERREILADLVSGHTHMVVGTHALIQEGVDFYNLG 374 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 LVI DEQHRFGV QR L +K P VL+MTATPIPRTL +T+ GD+D+S I E P GR+ Sbjct: 375 LVITDEQHRFGVNQRKILREKGQNPDVLMMTATPIPRTLAITAFGDMDVSIIDELPKGRQ 434 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515 PI T + + EV+ +K +++ + Y+I P IEE + + ++ F L+E+F Sbjct: 435 PITTRWVKHEQFSEVLSWIKAEVAKDSQVYFISPLIEESETLDLKNAEALFAELNEYFGL 494 Query: 516 -SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + I ++HG+M + +K+ +M FK +L++TTVIEVG+DV +A+I++I +A+ FGL+ Sbjct: 495 FAKIGLLHGKMKNDEKDQIMQEFKAKKLDILVSTTVIEVGVDVPNATIMVIMDADRFGLS 554 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG + S IL+ +P S + R+ ++ T++GF++AEEDLK R GEI Sbjct: 555 QLHQLRGRVGRGTKKSYAILVANPK-SDSGKQRMKIMTETQNGFILAEEDLKMRGSGEIF 613 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL---TQDPDLTS 675 G++QSG+P+F+ A ++LE+ARK+A I + PDL + Sbjct: 614 GLRQSGLPEFIAADLVNDYNILEVARKEAVEIFKNADEFPDLIA 657 >gi|15642978|ref|NP_228020.1| ATP-dependent DNA helicase RecG [Thermotoga maritima MSB8] gi|16975404|pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction gi|4980702|gb|AAD35297.1|AE001705_8 ATP-dependent DNA helicase [Thermotoga maritima MSB8] Length = 780 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 235/635 (37%), Positives = 356/635 (56%), Gaps = 23/635 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLL + P + DR K++++ VT G I + + Q +L+DG + Sbjct: 141 DLLEFFPRDYEDRRKIFKLNDLLPGEKVTTQGKIVSVETKKFQNMNILTAVLSDGLVHVP 200 Query: 103 LLFF---YRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV-----NFP 154 L +F Y +T + + G+++ VTG +K Y HN++ Sbjct: 201 LKWFNQDYLQTYLKQ---LTGKEVFVTGTVKS-----NAYTGQYEIHNAEVTPKEGEYVR 252 Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213 I +Y L +G+S +KI E + L L E + + +L+K+ + +A+ +H P Sbjct: 253 RILPIYRLTSGISQKQMRKIFEENIPSLCCSLKETLPERILEKRKLLGVKDAYYGMHFP- 311 Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 K F ARERLAY+EL Q+A +RK+ +K GIP +EGK+A++ ++++PF Sbjct: 312 --KTFYHLEKARERLAYEELFVLQLAFQKIRKEREKHGGIPKKIEGKLAEEFIKSLPFKL 369 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T +Q+ A ++I DM + M R+LQGDVGSGKT+VA +A+ EAG Q M P IL Sbjct: 370 TNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSIL 429 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A QHY + I V ++ G + + K + +GQ ++IGTHAL Q+ + + Sbjct: 430 AIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFK 489 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L LVI+DEQHRFGV+QR L K L+M+ATPIPR++ L GD+D++ I E P Sbjct: 490 NLGLVIIDEQHRFGVKQREALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPP 549 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 GRK ++T+++P++R++EV E ++ + G +A+ + P IEE + N +S VE + L + Sbjct: 550 GRKEVQTMLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKE 609 Query: 514 FTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 + ++HGR+S +K+ VM F G +L++TTVIEVGIDV A++++IEN E F Sbjct: 610 VFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERF 669 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631 GLAQLHQLRGRVGRG + + C L+ + + + RL DGF IAE DLK R G Sbjct: 670 GLAQLHQLRGRVGRGGQEAYCFLVVG-DVGEEAMERLRFFTLNTDGFKIAEYDLKTRGPG 728 Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666 E G+KQ G+ F +A LLE AR+D + I Sbjct: 729 EFFGVKQHGLSGFKVADLYRDLKLLEWAREDVQEI 763 >gi|89098692|ref|ZP_01171574.1| ATP-dependent DNA helicase RecG [Bacillus sp. NRRL B-14911] gi|89086654|gb|EAR65773.1| ATP-dependent DNA helicase RecG [Bacillus sp. NRRL B-14911] Length = 679 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 237/668 (35%), Positives = 381/668 (57%), Gaps = 29/668 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLS--KIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEIS 65 L P+++ +G+G + + L+ I G DLL + P + D YR K +SE+ Sbjct: 2 LNEPVTSIKGIGAETAEALADMNIFTVG--------DLLEHFPFRYED--YRLKDLSEVK 51 Query: 66 EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 E VT+ G I R+ ++ + G + + LK F +T+ Sbjct: 52 HEERVTVEGKIHSEPLLTYYGRKRSRLTIRVLVGRYLIQAVFFNQPYLKKKFAINDSVTI 111 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-V 184 TGK + + I H + N+ +F E VY++ ++V ++ I A S+ Sbjct: 112 TGKWDQHRQMISASEIH-LGENAASKDF---EPVYAVKGSITVKGIRRFIGMAFSQYADS 167 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 + E + + LL++ + +A +H P +D + AR R Y+E L Q+ + +R Sbjct: 168 IAETLPERLLEQYKLLNRKDALRAMHFPGGPEDLK---QARRRFVYEEFLYFQLKMQALR 224 Query: 245 KQFKKE--IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 K F++E GI + K ++ + ++PF T +Q+ + +IL DM RM R+LQGDV Sbjct: 225 K-FEREQSKGIVQTYDLKKLKEFIGSLPFPLTGAQKRVVNEILSDMKSPYRMNRLLQGDV 283 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKT+VA I + AA AG Q +M P ILA+QH + +K+ + + E++T ++ Sbjct: 284 GSGKTVVAAIGLYAAATAGYQGALMVPTEILAEQHEKSLKELLEPQGLSCELLTSSVKGK 343 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 R+ L R++ G+ ++IGTHAL Q +++ +L VI DEQHRFGV+QR L +K +P Sbjct: 344 KRKDILARLSEGEIDVLIGTHALIQQEVEFKRLGFVITDEQHRFGVEQRRVLREKGESPD 403 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 VL MTATPIPRTL +T G++D+S I E PAGRK I+T +D +++ ++ LS+G Sbjct: 404 VLFMTATPIPRTLAITVFGEMDVSIIDEMPAGRKTIETYWAKQEMLDRILQFMEKELSKG 463 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNG 540 ++AY ICP IEE + + ++ ++ ++L ++ + ++HGR+ +K+ VM F Sbjct: 464 RQAYVICPLIEESDKLDVQNAIDVHSNLTFYYQDRYKVGLMHGRLHPEEKDGVMKEFSRN 523 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L++TTV+EVG++V +A+I++I +AE FGL+QLHQLRGRVGRG E S CILL P Sbjct: 524 EIQILVSTTVVEVGVNVPNATIMVIYDAERFGLSQLHQLRGRVGRGSEQSYCILLADPK- 582 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIA 659 S+ R+ ++ T DGF+++E+DL+ R G+ G KQSGMP+F +A +HD LE A Sbjct: 583 SEVGKERMKIMSETNDGFVLSEKDLELRGPGDFFGRKQSGMPEFKVADM-VHDYRALETA 641 Query: 660 RKDAKHIL 667 R DA ++ Sbjct: 642 RNDASKLI 649 >gi|322388803|ref|ZP_08062400.1| DNA helicase RecG [Streptococcus infantis ATCC 700779] gi|321140422|gb|EFX35930.1| DNA helicase RecG [Streptococcus infantis ATCC 700779] Length = 671 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 243/674 (36%), Positives = 380/674 (56%), Gaps = 30/674 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHRPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGVSQAGLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E I + LL K ++A +H P KD A R+ ++EL Q+ L ++ + Sbjct: 169 ENIPQSLLDKYKLMPRSQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 K G+ +N + + +PF+ T++QE ++++IL DM + M R+LQGDVGSG Sbjct: 226 NKVHGSGLVLNWSQEKLTAVKEKLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT VA +AM AAV AG QA +M P ILA+QH+E ++ + ++ ++TG++ A +R Sbjct: 286 KTAVAGLAMYAAVTAGYQAALMVPTEILAEQHFESLESLFPDLKLA--LLTGSLKAAEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LE IA G+A +IIGTHAL QD + Y +L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 RVLETIAKGEADVIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRILREKGENPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T I ++ +V+ L+ + +G + Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQV 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + +A++HG+M +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAKVALLHGKMKSDEKDQIMQDFKERKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + + Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G KQSG+P+F +A +LE ARK A Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTKQSGLPEFHVADIIEDFPILEEARKVA 642 Query: 664 KHILT-----QDPD 672 +I + +DP+ Sbjct: 643 SYISSLPNWREDPE 656 >gi|258514450|ref|YP_003190672.1| ATP-dependent DNA helicase RecG [Desulfotomaculum acetoxidans DSM 771] gi|257778155|gb|ACV62049.1| ATP-dependent DNA helicase RecG [Desulfotomaculum acetoxidans DSM 771] Length = 692 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 231/638 (36%), Positives = 367/638 (57%), Gaps = 13/638 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL-QKRRPYKILLNDGTGEI 101 D+L+Y P + +R ++E S++ V++ G + +L Q K+ L+DG Sbjct: 35 DMLYYFPRRYEERKLIEFVNECSQDDTVSVRGTVLGSQDLKLRQGLTATKVALSDGMNIF 94 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--DVNFPLIEAV 159 ++F + +K G ITVTGK+ + + + + +NS + + I V Sbjct: 95 YAVWFNQPH--IKKQIAPGLTITVTGKVDQRYGAVQIRVADFELNNSSVAENYWCSIVPV 152 Query: 160 YSLPTGLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 Y+L ++ + +I L E+I ++L++K + + +H P+ + Sbjct: 153 YALSEKINQKFLRGLIKTCLEEYTSEQEEFIPENLIKKYRLLPLNRSLLWMHQPQNILE- 211 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI-PINVEGKIAQKILRNIPFSPTKSQ 277 T AR RL ++EL Q+ L ++ +++ + + +I +K L N+ F T +Q Sbjct: 212 --TEKARRRLIFEELFLLQLLLAARKRTITRKLKFFTYSDKNEILKKFLNNLSFGLTPAQ 269 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 ++I+ DM + M R+LQGDVGSGKT+++ +A+ A E G Q +M P ILA+QH Sbjct: 270 SRVWQEIMTDMHRSVPMYRLLQGDVGSGKTVISTLALLKAAENGLQGALMVPTEILAEQH 329 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y F+K+Y + I V ++TG M +A + A + I GQ I+IGTHAL Q++I + L + Sbjct: 330 YLFLKRYMEPLGINVGLLTGKMKKAEKNMAFQLIESGQMQIVIGTHALIQENIAFKHLAM 389 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 ++DEQHRFGV+QR L K P +L+MTATPIPRTL +T GD+DIS I + P GRKP Sbjct: 390 AVIDEQHRFGVRQRATLQDKGICPDMLVMTATPIPRTLAMTLYGDLDISVIDQLPPGRKP 449 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516 IKT +I N++ + E ++ + G++AY ICP +EE + ++ ++ L E + Sbjct: 450 IKTHVIYENKLPDTYEFMRKQIRIGRQAYIICPLVEESEHVESQAAIDLALELSEGELAD 509 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 S+ ++HGRM KE VM F+ G L+ TTVIEVG+DV +A++++I +A+ FGLAQ Sbjct: 510 FSVGLLHGRMKSELKEEVMTKFRLGEIDALVTTTVIEVGVDVPNATVMVILDADRFGLAQ 569 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG E S CIL+ +P + + RL+ + +EDGF +AE+DL+ R GE G Sbjct: 570 LHQLRGRVGRGLEQSYCILVANPK-TDEARARLAAMHRSEDGFYLAEQDLRIRGPGEFCG 628 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 +QSG+P +A +LE+AR++A +L DP+L Sbjct: 629 TRQSGLPDLKVADLIRDWKILEVARQEAIDLLASDPEL 666 >gi|317121767|ref|YP_004101770.1| ATP-dependent DNA helicase RecG [Thermaerobacter marianensis DSM 12885] gi|315591747|gb|ADU51043.1| ATP-dependent DNA helicase RecG [Thermaerobacter marianensis DSM 12885] Length = 924 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 246/710 (34%), Positives = 378/710 (53%), Gaps = 27/710 (3%) Query: 3 PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62 P+ L P PLS GVG++ + L+++ A DLL++ P + DR I+ Sbjct: 226 PAALTPA-TPLSRLPGVGRRQAQRLARL-GLHTAG-----DLLWHLPRRYEDRSTWKPIA 278 Query: 63 EISEERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + + T+ G + + R +I ++DG+G + +FF + + + V GR Sbjct: 279 RLVPGEVATVQGVVVDAQRVPTRTGRTVVRITVSDGSGRLDAVFFNQPFRLQQLV--PGR 336 Query: 122 KITVTGKIKKLKNRIIMVHPHYI---FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 + ++G++ M HP + V+ I VY GL +++ + Sbjct: 337 TVLLSGRVDAGYRGWQMDHPEVEPVEGGEGEPVHTARIVPVYPATEGLHQRWLRQLAWQV 396 Query: 179 LSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237 + L +PE + L + A IH P D AR RLA++E Q Sbjct: 397 VGALAGQVPEILPAGLRAALGLVDRSTALRHIHFP---PDAAAWQAARRRLAFEEWFVMQ 453 Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 +AL +R Q ++E G +G + L ++PF T +Q + +I DM M R+ Sbjct: 454 VALARVRSQQQQEPGRAHRPDGPRVARFLASLPFELTPAQRRVLDEIRADMEAPRPMRRL 513 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 +QGDVGSGKT+VA AM AVE+G QA +MAP ILA+QH ++ I V + G Sbjct: 514 VQGDVGSGKTVVAAWAMVKAVESGAQAALMAPTEILAEQHARRLQSLLAPAGIPVVQLVG 573 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 ++P A R + LE +A G+ +++GTHAL QD +++ L LVI+DEQHRFGV+QR L K Sbjct: 574 SLPAADRERVLEGLASGRWPVVVGTHALIQDDVRFRDLSLVIIDEQHRFGVRQRALLQGK 633 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 P +L+MTATPIPRTL LT GD+D+S I + P GR+P++T+ + + + L Sbjct: 634 GQVPDLLVMTATPIPRTLALTLYGDLDVSVIDQLPPGRQPVRTLWLRGRQRRRAYDLLAA 693 Query: 478 VLSEGKKAYWICPQIEEK-------KESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDID 529 ++ G++ Y +CP ++E ++ ++V + + + I+HGRM + Sbjct: 694 RVAAGEQGYVVCPLVDEPAGGAGGAGDAEQKAVTTWAEFVARRYPRLRVGILHGRMPGAE 753 Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589 KE VM +F+ +L+ATTVIEVG+DV +A+++IIE A+ FGLAQLHQLRGRVGRG + Sbjct: 754 KERVMRAFERRALDVLVATTVIEVGVDVPNATVMIIEGADRFGLAQLHQLRGRVGRGSKE 813 Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649 S CIL+ P ++ RL L ++ GF IAE DL+ R G+ G +Q G+P IA P Sbjct: 814 SLCILVADPATAEGRL-RLEALCRSQSGFEIAEFDLELRGPGDFFGTRQHGLPALRIADP 872 Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699 LL AR+ A+ +L +DP L + Q++R + L +Y E RA Sbjct: 873 IRDAGLLRQAREAARRLLEEDPQLAAPEHQALRWEV-LDRYGEFLAEARA 921 >gi|294500971|ref|YP_003564671.1| ATP-dependent DNA helicase RecG [Bacillus megaterium QM B1551] gi|294350908|gb|ADE71237.1| ATP-dependent DNA helicase RecG [Bacillus megaterium QM B1551] Length = 682 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 238/658 (36%), Positives = 371/658 (56%), Gaps = 35/658 (5%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL----QKRRPYKILLNDGT 98 DLL + P + D + ++E + VT+ G + S + R +++L+N Sbjct: 33 DLLEHFPYRYEDYELK-DLAEAKHDEKVTVEGKVHSVPSLTYYGKKRSRLTFRLLVNRYL 91 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP---- 154 IT+ F R K+ + +TVTGK + + I N Q++ F Sbjct: 92 --ITVTCFNRP--YYKSKLEIDQTVTVTGKWDQHRQTI----------NLQELQFSPFVK 137 Query: 155 --LIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHN 211 IE VYS+ L+V +K + AL + + + + + + EA IH Sbjct: 138 NQTIEPVYSVKGSLTVKGMRKFVSLALKNYGSSIQDMLPASIRSRYKLVTREEAVRSIHL 197 Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIP 270 PR +D + AR R Y+E L Q+ + +RK+ ++E G+ + +P Sbjct: 198 PRDHEDLK---QARRRFVYEEFLLFQLKMQALRKREREETPGMKQVFDSTELVNFTNLLP 254 Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T +Q+ + +I DM RM R+LQGDVGSGKT+VA +A+ A V AG Q +M P Sbjct: 255 FPLTNAQKRVVNEITHDMKSPYRMNRLLQGDVGSGKTVVAAVALYATVLAGHQGALMVPT 314 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 ILA+QH E + + I V ++TG++ RR+ L+R+ G H+++GTHAL QD + Sbjct: 315 EILAEQHAESLTAMLEKVGISVGLLTGSVKGKARRELLQRVKDGDVHVLVGTHALIQDEV 374 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 Y L LVI DEQHRFGV QR L +K +P VL MTATPIPRTL +T G++D+S I E Sbjct: 375 IYNSLGLVITDEQHRFGVGQRRVLREKGESPDVLFMTATPIPRTLAITVFGEMDVSIIDE 434 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 PAGRK I+T + + ++ ++ ++ + +G++AY ICP IEE + + ++ ++ +L Sbjct: 435 MPAGRKAIETYWVKHDMLERILHFVEKEIHDGRQAYVICPLIEESDKLDVQNAIDVHATL 494 Query: 511 HEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 +F +S+ ++HGR+S +KE VM F ++L++TTV+EVG++V +A++++I +A Sbjct: 495 THYFNGKASVGLMHGRLSPDEKEEVMKQFSVNDVQILVSTTVVEVGVNVPNATVMVIYDA 554 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628 E FGL+QLHQLRGRVGRG+ S CILL P S+ R++++ T DGF+++E DL+ R Sbjct: 555 ERFGLSQLHQLRGRVGRGDAQSYCILLADPK-SEVGKERMTIMTETNDGFVLSERDLELR 613 Query: 629 KEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685 G+ G KQSGMP+F +A +HD LE+AR+DA ++ D T + +RI L Sbjct: 614 GPGDFFGRKQSGMPEFKVADM-VHDYRALEVAREDAAKLVNSDSFWTEDQFALLRIQL 670 >gi|307705414|ref|ZP_07642271.1| ATP-dependent DNA helicase RecG [Streptococcus mitis SK597] gi|307621013|gb|EFO00093.1| ATP-dependent DNA helicase RecG [Streptococcus mitis SK597] Length = 671 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 240/663 (36%), Positives = 377/663 (56%), Gaps = 25/663 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKTSLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL K S +A +H P KD A R+ ++EL Q+ L ++ + Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ +N + + N+PF+ T +QE ++ +IL DM + M R+LQGDVGSG Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKENLPFALTPAQEKSLLEILTDMKSDHHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QA +M P ILA+QH+E ++ + ++ ++TG++ A +R Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQSLFPDLKLA--LLTGSLKVAEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LE IA G+A +IIGTHAL QD + Y +L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRVLREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T I ++ +V+ L+ + +G +A Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLIWLEGEIQKGSQA 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L +F + +A++HG+M +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAYFAGKAEVALLHGKMKSDEKDQIMQEFKERKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + + Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKDRMLIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642 Query: 664 KHI 666 +I Sbjct: 643 SYI 645 >gi|329121239|ref|ZP_08249866.1| DNA helicase RecG [Dialister micraerophilus DSM 19965] gi|327470173|gb|EGF15636.1| DNA helicase RecG [Dialister micraerophilus DSM 19965] Length = 678 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 213/592 (35%), Positives = 346/592 (58%), Gaps = 10/592 (1%) Query: 88 RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN 147 R ++L D +TL +F + + K F +I GK++ L + + + Sbjct: 77 RLLSVILTDNINSVTLTYFNQSWK--KKQFNINEEILAYGKVEYLYGKYQISNAEIEAVP 134 Query: 148 SQDV-NFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206 +++ NF + +Y L G++ + +I AL + L E + ++L +++FP A Sbjct: 135 KENLKNFEKLVPIYPLTEGITATQMRSMIAFALKNVSNLKENLPIEILTRENFPDKLLAV 194 Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK-KEIGIPINVEGKIAQKI 265 ++HNP+ K+ E AR+RLA++EL Q +L+++++ K GI + GK+ + + Sbjct: 195 KMLHNPKNYKEKE---TARKRLAFEELFFMQAGILMLKEKRKINSYGIKCSPSGKLVKSV 251 Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 L PF TK Q+ A DI DM M R+LQGDVGSGKT +A + A VE G QA Sbjct: 252 LNKFPFELTKDQKKAFSDIENDMEDIEPMYRLLQGDVGSGKTAIAALTAAKIVENGYQAT 311 Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +MAP +LA QHY+ +N + + ++GN+ + R L ++ G+ I+IGTHAL Sbjct: 312 LMAPTEVLASQHYKTFLNLYKNLSVEIAYLSGNIKNSEREVLLNKLKSGEIDILIGTHAL 371 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445 ++++++ L LVI DEQHRFGV+QR L K PHVL+MTATPIPRT+ L+ GD+D Sbjct: 372 IENNVKFAHLGLVITDEQHRFGVKQRELLETKGENPHVLVMTATPIPRTMALSVYGDLDA 431 Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 S I + P GRKP+KT +I + V+ +K + +G +AY +CP +EE ++++ + + Sbjct: 432 SVINQMPIGRKPVKTYVINDKLLQRVLIFIKKEIQKGHQAYIVCPLVEESEKTDLAAAIS 491 Query: 506 RFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 ++ L ++ S +I+G+M + +KE +M+ F ++L+AT+VIEVG++V +A+++ Sbjct: 492 VYDKLRKNIFSEYKCGLIYGKMKNSEKEQIMNDFCENKLQILVATSVIEVGVNVPNATVM 551 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623 ++ AE FGL+QLHQLRGRVGRG+ S CI LY ++ + RL+++ +GFL++E+ Sbjct: 552 LVYGAERFGLSQLHQLRGRVGRGKIQSYCI-LYTKNTNETTTLRLNIMTKINNGFLLSEK 610 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 DL R GE+ G Q GMP +A LLE AR A+ + + ++ S Sbjct: 611 DLMLRGSGELFGYHQHGMPDLKVANIIKDLPLLEKARNYAQKFIHSEKNIKS 662 >gi|284802257|ref|YP_003414122.1| hypothetical protein LM5578_2013 [Listeria monocytogenes 08-5578] gi|284995399|ref|YP_003417167.1| hypothetical protein LM5923_1964 [Listeria monocytogenes 08-5923] gi|284057819|gb|ADB68760.1| hypothetical protein LM5578_2013 [Listeria monocytogenes 08-5578] gi|284060866|gb|ADB71805.1| hypothetical protein LM5923_1964 [Listeria monocytogenes 08-5923] Length = 697 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 242/680 (35%), Positives = 386/680 (56%), Gaps = 23/680 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P + +G+G++ + L ++ + DLL+ P + D R +SE++ E +T Sbjct: 23 PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 75 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 I G + ++ R+ K+ T G++ + F+ + LK+ G +T++GK Sbjct: 76 IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKISVGETVTISGKWD 134 Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWI 189 K + ++ S++ +E VY L L +K A S + E I Sbjct: 135 KSRAQVTASKIKIGAVESEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEVI 190 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFK 248 +LL+K EA I+H P K+ E AR R+ Y+E L Q+ + RK + + Sbjct: 191 PGNLLEKYQLMDRLEAVRILHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKIERE 247 Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 K GI IN + + + + ++PF TK+Q+ + +I DM M R+LQGDVGSGKT+ Sbjct: 248 KSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKTV 307 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VA IAM AA ++G Q+ +M P ILA+QH + + Q I V ++T ++ RR+ L Sbjct: 308 VASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRRELL 367 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428 + +G ++IGTHAL QD + Y++L LVI DEQHRFGV QR L +K P VL MTA Sbjct: 368 AMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMTA 427 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488 TPIPRTL +T+ G++D+S I E PAGRK I+T + +D VI ++ + +G + Y I Sbjct: 428 TPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYII 487 Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLI 546 CP IEE ++ + ++ ++ FN L + + ++HG++ DKE +M F + L+ Sbjct: 488 CPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNDKKIDCLV 547 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 +TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ P ++ Sbjct: 548 STTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGVDQSYCILIADPK-TEVGKE 606 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKH 665 R+ ++ T DGF+++E DL+ R G+ G KQSG+P+F +A +HD +LEIAR+DA H Sbjct: 607 RMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQDAVH 665 Query: 666 ILTQDPDLTSVRGQSIRILL 685 ++ ++ L + + + LL Sbjct: 666 MIFEEDMLENKNYEKLVALL 685 >gi|322377446|ref|ZP_08051937.1| ATP-dependent DNA helicase RecG [Streptococcus sp. M334] gi|321281646|gb|EFX58655.1| ATP-dependent DNA helicase RecG [Streptococcus sp. M334] Length = 671 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 239/663 (36%), Positives = 377/663 (56%), Gaps = 25/663 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL K S +A +H P KD A R+ ++EL Q+ L ++ + Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ +N + + ++PF+ T +QE ++++IL DM M R+LQGDVGSG Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKASLPFALTPAQEKSLQEILTDMKSDYHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QA +M P ILA+QH+E ++ + ++ ++TG++ A +R Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQGLFPDLKLA--LLTGSLKVAEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LE IA G++ +IIGTHAL QD + Y +L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 EVLETIAKGESDLIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRVLREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T I ++ +V+ L+ + +G +A Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + +A++HG+M +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAKVALLHGKMKSDEKDQIMQDFKERKTN 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + + Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKDRMRIMTETTNGFILAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642 Query: 664 KHI 666 +I Sbjct: 643 SYI 645 >gi|16803851|ref|NP_465336.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes EGD-e] gi|224501387|ref|ZP_03669694.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL R2-561] gi|16411265|emb|CAC99889.1| lmo1811 [Listeria monocytogenes EGD-e] Length = 682 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 242/680 (35%), Positives = 386/680 (56%), Gaps = 23/680 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P + +G+G++ + L ++ + DLL+ P + D R +SE++ E +T Sbjct: 8 PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 I G + ++ R+ K+ T G++ + F+ + LK+ G +T++GK Sbjct: 61 IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKISVGETVTISGKWD 119 Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWI 189 K + ++ S++ +E VY L L +K A S + E I Sbjct: 120 KSRAQVTASKIKIGAVESEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEVI 175 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFK 248 +LL+K EA I+H P K+ E AR R+ Y+E L Q+ + RK + + Sbjct: 176 PGNLLEKYQLMDRLEAVRILHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKIERE 232 Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 K GI IN + + + + ++PF TK+Q+ + +I DM M R+LQGDVGSGKT+ Sbjct: 233 KSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKTV 292 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VA IAM AA ++G Q+ +M P ILA+QH + + Q I V ++T ++ RR+ L Sbjct: 293 VASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRRELL 352 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428 + +G ++IGTHAL QD + Y++L LVI DEQHRFGV QR L +K P VL MTA Sbjct: 353 AMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMTA 412 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488 TPIPRTL +T+ G++D+S I E PAGRK I+T + +D VI ++ + +G + Y I Sbjct: 413 TPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYII 472 Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLI 546 CP IEE ++ + ++ ++ FN L + + ++HG++ DKE +M F + L+ Sbjct: 473 CPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNDKKIDCLV 532 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 +TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ P ++ Sbjct: 533 STTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGVDQSYCILIADPK-TEVGKE 591 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKH 665 R+ ++ T DGF+++E DL+ R G+ G KQSG+P+F +A +HD +LEIAR+DA H Sbjct: 592 RMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQDAVH 650 Query: 666 ILTQDPDLTSVRGQSIRILL 685 ++ ++ L + + + LL Sbjct: 651 MIFEEDMLENKNYEKLVALL 670 >gi|69249786|ref|ZP_00605048.1| ATP-dependent DNA helicase RecG [Enterococcus faecium DO] gi|257878761|ref|ZP_05658414.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,230,933] gi|257881402|ref|ZP_05661055.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,502] gi|257890619|ref|ZP_05670272.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,410] gi|258615172|ref|ZP_05712942.1| ATP-dependent DNA helicase RecG [Enterococcus faecium DO] gi|293562982|ref|ZP_06677449.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1162] gi|294622007|ref|ZP_06701151.1| ATP-dependent DNA helicase RecG [Enterococcus faecium U0317] gi|314937645|ref|ZP_07844971.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133a04] gi|314942856|ref|ZP_07849669.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133C] gi|314948008|ref|ZP_07851412.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0082] gi|314950926|ref|ZP_07853995.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133A] gi|314991426|ref|ZP_07856903.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133B] gi|314995053|ref|ZP_07860173.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133a01] gi|68194075|gb|EAN08620.1| ATP-dependent DNA helicase RecG [Enterococcus faecium DO] gi|257812989|gb|EEV41747.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,230,933] gi|257817060|gb|EEV44388.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,502] gi|257826979|gb|EEV53605.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,410] gi|291598434|gb|EFF29507.1| ATP-dependent DNA helicase RecG [Enterococcus faecium U0317] gi|291605108|gb|EFF34575.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1162] gi|313590779|gb|EFR69624.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133a01] gi|313593906|gb|EFR72751.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133B] gi|313596935|gb|EFR75780.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133A] gi|313598328|gb|EFR77173.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133C] gi|313643022|gb|EFS07602.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133a04] gi|313645606|gb|EFS10186.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0082] Length = 678 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 235/665 (35%), Positives = 379/665 (56%), Gaps = 27/665 (4%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 + L P++ GVG+K + L+ + DLL Y+P + D R ++EI Sbjct: 1 MRSLDDPITMLAGVGEKRAASLASL------GIQTIEDLLTYYPFRYEDIQER-NLNEIQ 53 Query: 66 EERIVTITGYISQ---HSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 ++ VT+ G + + F +K R ++++ ++ FF + LK Sbjct: 54 DQEKVTLKGIVVSPPVMNRFGYKKSRLQFRMMQEHDVFNVS--FFNQP--YLKEKVILSE 109 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 +I V GK R + + + D P+ S+ VDL KK E + Sbjct: 110 EIAVYGKWDA--KRKALNGMKILGSQTMDDFSPIYHVNKSIRQTTLVDLIKKGFQEYGT- 166 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 ++ E + +L++K A A +H P KD E A+ R+ ++E Q+ L Sbjct: 167 --LIEENLPNNLVEKYRLLDRASAVRSMHFP---KDHEENHQAKRRVVFEEFFLFQMRLQ 221 Query: 242 LMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 ++K K E G+ I + + ++ + +PF T +Q+ +I +D+ M R+LQG Sbjct: 222 GLKKAEKAETNGLEILYDVQKLKQFTQKLPFELTNAQKRVTNEICRDLRSPQHMQRLLQG 281 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA IA+ A V AG Q +M P ILAQQH E +++ ++ + +ITG+ Sbjct: 282 DVGSGKTVVAAIALYATVTAGFQGALMVPTEILAQQHMESLQQLFDPNEVTIALITGSTK 341 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 RR+ LE++ G+ +++IGTHAL QD +++ L LVI DEQHRFGV QR L +K Sbjct: 342 AKERRELLEKLEQGEINVVIGTHALIQDGVEFQNLGLVITDEQHRFGVNQRKVLREKGWR 401 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 P VL MTATPIPRTL +T+ G++D+S I E PAGR PI+T + ++D V++ K L+ Sbjct: 402 PDVLFMTATPIPRTLAITAYGEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTKKELA 461 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFK 538 G + Y ICP IEE + + ++ VE + L E F + ++HG+M + +KE +M++FK Sbjct: 462 RGHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAFK 521 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 + ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P Sbjct: 522 DNQMQILVSTTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVANP 581 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 ++ R+ ++ T +GF+++E+DL+ R GE+ G +QSG+P+F IA ++LE+ Sbjct: 582 K-NELGVERMKIMTETTNGFVLSEKDLELRGPGEVFGFRQSGLPQFAIADLVTDGNVLEV 640 Query: 659 ARKDA 663 AR++A Sbjct: 641 AREEA 645 >gi|289826478|ref|ZP_06545590.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 566 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 220/545 (40%), Positives = 324/545 (59%), Gaps = 20/545 (3%) Query: 138 MVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VLPEWIEK 191 M+HP Y D++ P ++ VY G+ +K+ +AL L + E + Sbjct: 1 MIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAIAELLPP 58 Query: 192 DLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALLLMRKQF 247 +L Q S+ EA +H P + D E PA+ RL +ELLA +++L +R Sbjct: 59 ELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSMLALRAGA 116 Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 ++ P++ + K+L ++PF PT +Q + +I +DM+ M+R++QGDVGSGKT Sbjct: 117 QRYHTQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGDVGSGKT 176 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 LVA +A A+ G Q +MAP +LA+QH + + + + V + G R+ Sbjct: 177 LVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKGKARQAQ 236 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHV 423 E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K PH Sbjct: 237 QEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQGFHPHQ 296 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VVLSEG 482 L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R E+I+R++ +EG Sbjct: 297 LIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRNACTTEG 356 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541 ++AYW+C IEE ++ + L +I ++HGRM +K++VM +FK G Sbjct: 357 RQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQAFKQGE 416 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLY PLS Sbjct: 417 LHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKSPLS 476 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 K + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A +++ ++ Sbjct: 477 KTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIPEVQR 536 Query: 662 DAKHI 666 A+HI Sbjct: 537 IARHI 541 >gi|239826579|ref|YP_002949203.1| ATP-dependent DNA helicase RecG [Geobacillus sp. WCH70] gi|239806872|gb|ACS23937.1| ATP-dependent DNA helicase RecG [Geobacillus sp. WCH70] Length = 682 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 238/664 (35%), Positives = 382/664 (57%), Gaps = 27/664 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYH-PSSFIDRHYRPKISEISEERIV 70 P++ +G+G++ S L ++ I+ LF H P + D + ++E+ + V Sbjct: 8 PVTAIKGIGEETSEALREM-------GITTIEELFMHIPYRYEDYEIK-DLAEVKHDEKV 59 Query: 71 TITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGK 128 T+ G + S ++ ++ G IT++ F R LK +TV GK Sbjct: 60 TVEGKVHSEPSLTYYAKKKSRLTFRLLVGRYLITVVCFNRP--YLKGKLSINDTVTVIGK 117 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPE 187 + + I Y IE VYS+ ++V ++ I AL++ + + Sbjct: 118 WDQHRQMITA----YELKLGPLPQKREIEPVYSVRGSITVKGMRRFIKLALTQYGEAIVD 173 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-Q 246 + + Q S EA IH PR ++ + AR RL Y+E L Q+ + +RK Q Sbjct: 174 PLPLSIRQTYRLISKQEAIRAIHFPRSHEELK---QARRRLVYEEFLLFQLKIHALRKVQ 230 Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 + GI + + ++ +PFS TK+Q+ + +IL DM RM R+LQGDVGSGK Sbjct: 231 REYSEGIAHSFSEEKLHAFIQQLPFSLTKAQQRVVHEILADMRSPYRMNRLLQGDVGSGK 290 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366 T+VA I + AAV +G Q +M P ILA+QH + ++ +T + V ++T ++ R++ Sbjct: 291 TVVAAIVLYAAVLSGYQGALMVPTEILAEQHAQSLQTLFASTNVAVALLTSSVKGKKRKE 350 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426 LE++A G IIIGTHAL Q+ + + KL LVI DEQHRFGV+QR L +K +P VL+M Sbjct: 351 ILEQLACGDIDIIIGTHALIQEEVNFKKLGLVITDEQHRFGVEQRRILREKGQSPDVLMM 410 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486 TATPIPRTL +T+ G++D+S I E PAGRK ++T + + + V++ ++ + +G++AY Sbjct: 411 TATPIPRTLAITAFGEMDVSVIDEMPAGRKKVQTYWVKHHMFERVLDFIEKEIQKGRQAY 470 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKL 544 ICP IEE ++ + ++ ++ + L ++ I ++HGR+S +KE VM +F ++ Sbjct: 471 VICPLIEESEKLDVQNAIDVHSMLTHYYKGKYHIGLMHGRLSSEEKEEVMKAFSENRVQV 530 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 L++TTV+EVG++V +A++++I +AE FGLAQLHQLRGRVGRG+E S CIL+ P S+ Sbjct: 531 LVSTTVVEVGVNVPNATVMVIYDAERFGLAQLHQLRGRVGRGDEQSYCILIADPK-SETG 589 Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDA 663 R+ ++ T DGF+++E+DL+ R G+ G KQSGMP+F +HD +LE+AR DA Sbjct: 590 KERMRIMTETTDGFVLSEKDLQLRGPGDFFGTKQSGMPEFKFGDV-VHDYRILEVARNDA 648 Query: 664 KHIL 667 ++ Sbjct: 649 AKLV 652 >gi|312793403|ref|YP_004026326.1| ATP-dependent DNA helicase recg [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180543|gb|ADQ40713.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor kristjanssonii 177R1B] Length = 679 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 230/613 (37%), Positives = 363/613 (59%), Gaps = 19/613 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS-QHSSFQLQKRRPYKILLNDGTGEI 101 DLL++ P ++D KI E+ + I + ++ + + + + KI + D TG + Sbjct: 32 DLLWHIPRKYLDYSRLKKIRELCDGEIESFVAKVAGKPVEIETRSVKIIKIPVEDSTGVV 91 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161 T ++F + + +KNV EG +GKI++ I + +P + ++ Q ++ I VY+ Sbjct: 92 TTVWFNQ--DYIKNVLKEGEIFCFSGKIERKGFYIEVKNPEFEKYDQQLLHTGRIVPVYN 149 Query: 162 LPTGLSVDLFKKIIVEALSR-----LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216 GLS + + I+ L + + ++P +I QK + I A IH P Sbjct: 150 STEGLSQKVIRNIVNNLLHQVDGMLIDIIPPYIR----QKYNLRDINFAIKNIHFPENKL 205 Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276 E AR+RL ++E Q++LLL+++ +K GI I ++ + +PF T++ Sbjct: 206 SLEL---ARKRLVFEEFYLLQLSLLLLKENIEKNEGIKIENAQSSLKEFEKLLPFELTEA 262 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q+ + +I QD+ +M R++QGDVG GKT+VAL + A ++AG Q +MAP +LA Q Sbjct: 263 QKRVLAEIAQDLESTKQMNRLIQGDVGCGKTVVALASAYATIKAGYQVALMAPTEVLALQ 322 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 HY KKY N + V ++ G+ P+ + L+ + HG ++IGTHAL QD +++ L Sbjct: 323 HYNECKKYFGN-KFNVRLLIGSTPKKEKEIILKELEHGLCKMVIGTHALIQDEVKFKNLG 381 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 L I DEQHRFGV QR++LT+K ++P++L+MTATPIPRTL L GD+DIS I + P GRK Sbjct: 382 LAITDEQHRFGVIQRVELTKKGSSPNILVMTATPIPRTLSLVLYGDLDISIIDQLPPGRK 441 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-- 514 I T + + V +K L EG++ YWICP IEE + N +S VE SL E F Sbjct: 442 KILTYAVDESFRQRVYNFIKKQLDEGRQVYWICPLIEESETLNAKSAVEFAKSLKEGFFK 501 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 ++ +HG++S +++ +++ FK+G +L++TTV+EVGI+V +A++++IENAE FGLA Sbjct: 502 DYNVGCLHGKLSAKERDKILNDFKDGHIHILVSTTVVEVGINVPNATVMVIENAERFGLA 561 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRGE S CI L++ S+ + R+ + +++GF IAE DLK R G++ Sbjct: 562 QLHQLRGRVGRGEHQSYCI-LFNQSDSEIAKKRMIAITRSQNGFEIAEMDLKLRGPGDLF 620 Query: 635 GIKQSGMPKFLIA 647 G KQ G+ F +A Sbjct: 621 GTKQHGIMNFKVA 633 >gi|260558329|ref|ZP_05830525.1| ATP-dependent DNA helicase RecG [Enterococcus faecium C68] gi|293567889|ref|ZP_06679230.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1071] gi|260075503|gb|EEW63809.1| ATP-dependent DNA helicase RecG [Enterococcus faecium C68] gi|291589474|gb|EFF21281.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1071] Length = 678 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 234/665 (35%), Positives = 379/665 (56%), Gaps = 27/665 (4%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 + L P++ GVG+K + L+ + DLL Y+P + D R ++EI Sbjct: 1 MRSLDDPITMLAGVGEKRAASLASL------GIQTIEDLLTYYPFRYEDIQER-NLNEIQ 53 Query: 66 EERIVTITGYISQ---HSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 ++ VT+ G + + F +K R ++++ ++ FF + LK Sbjct: 54 DQEKVTLKGIVVSPPVMNRFGYKKSRLQFRMMQEHDVFNVS--FFNQP--YLKEKVILSE 109 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 +I V GK R + + + D P+ S+ VDL KK E + Sbjct: 110 EIAVYGKWDA--KRKALNGMKILGSQTMDDFSPIYHVNKSIRQTTLVDLIKKGFQEYGT- 166 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 ++ E + +L++K A A +H P KD E A+ R+ ++E Q+ L Sbjct: 167 --LIEENLPNNLVEKYRLLDRASAVRSMHFP---KDHEENHQAKRRVVFEEFFLFQMRLQ 221 Query: 242 LMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 ++K K E G+ I + + ++ + +PF T +Q+ +I +D+ M R+LQG Sbjct: 222 GLKKAEKAETNGLEILYDVQKLKEFTQKLPFELTNAQKRVTNEICRDLRSPQHMQRLLQG 281 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA IA+ A V AG Q +M P ILAQQH E +++ ++ + ++TG+ Sbjct: 282 DVGSGKTVVAAIALYATVTAGFQGALMVPTEILAQQHMESLQQLFDPNEVTIALLTGSTK 341 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 RR+ LE++ G+ +++IGTHAL QD +++ L LVI DEQHRFGV QR L +K Sbjct: 342 AKERRELLEKLGQGEINVVIGTHALIQDGVEFQNLGLVITDEQHRFGVNQRKVLREKGWR 401 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 P VL MTATPIPRTL +T+ G++D+S I E PAGR PI+T + ++D V++ K L+ Sbjct: 402 PDVLFMTATPIPRTLAITAYGEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTKKELA 461 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFK 538 G + Y ICP IEE + + ++ VE + L E F + ++HG+M + +KE +M++FK Sbjct: 462 RGHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAFK 521 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 + ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P Sbjct: 522 DNQMQILVSTTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVANP 581 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 ++ R+ ++ T +GF+++E+DL+ R GE+ G +QSG+P+F IA ++LE+ Sbjct: 582 K-NELGVERMKIMTETTNGFVLSEKDLELRGPGEVFGFRQSGLPQFAIADLVTDGNVLEV 640 Query: 659 ARKDA 663 AR++A Sbjct: 641 AREEA 645 >gi|170288540|ref|YP_001738778.1| ATP-dependent DNA helicase RecG [Thermotoga sp. RQ2] gi|170176043|gb|ACB09095.1| ATP-dependent DNA helicase RecG [Thermotoga sp. RQ2] Length = 763 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 234/634 (36%), Positives = 355/634 (55%), Gaps = 21/634 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLL + P + DR K++++ VT G I + + Q +L+DG + Sbjct: 124 DLLEFFPRDYEDRRKIFKLNDLLPGEKVTTQGKIVSVETKRFQNMNILTAVLSDGLVHVP 183 Query: 103 LLFFYRKTEMLKNVF--FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ-----DVNFPL 155 L +F E L+ G+++ VTG +K Y HN++ Sbjct: 184 LKWF--NQEYLQTYLKQLTGKEVFVTGTVKS-----NAYTGQYEIHNAEVTPKEGEYVRR 236 Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 I +Y L +G+S +KI E + L L E + + +L+K+ + +A+ +H P Sbjct: 237 ILPIYRLTSGISQKQMRKIFEENIPSLCCSLKETLPERILEKRKLLGVKDAYYGMHFP-- 294 Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274 K F ARERLAY+EL Q+A +RK+ +K GIP +EGK+A++ ++++PF T Sbjct: 295 -KTFYHLEKARERLAYEELFVLQLAFQKIRKEREKHGGIPKKIEGKLAEEFIKSLPFKLT 353 Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334 +Q+ A ++I DM + M R+LQGDVGSGKT+VA +A+ EAG Q M P ILA Sbjct: 354 NAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILA 413 Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394 QHY + I V ++ G + + K + +GQ ++IGTHAL Q+ + + Sbjct: 414 IQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKN 473 Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454 L LVI+DEQHRFGV+QR L K L+M+ATPIPR++ L GD+D++ I E P G Sbjct: 474 LGLVIIDEQHRFGVKQREALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPG 533 Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 RK ++T+++P++R++E+ E ++ + +G +A+ + P IEE + N +S VE + L + Sbjct: 534 RKEVQTMLVPMDRVNEIYEFVRQEVMKGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEV 593 Query: 515 TSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 + ++HGR+S +K+ VM F G +L++TTVIEVGIDV A++++IEN E FG Sbjct: 594 FPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFG 653 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 LAQLHQLRGRVGRG + + C L+ + + + RL DGF IAE DLK R GE Sbjct: 654 LAQLHQLRGRVGRGGQEAYCFLVVG-DVGEEAMERLRFFTLNTDGFKIAEYDLKTRGPGE 712 Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666 G+KQ G+ F +A LLE AR+D + I Sbjct: 713 FFGVKQHGLSGFKVADLYRDLKLLEWAREDVQEI 746 >gi|312622538|ref|YP_004024151.1| ATP-dependent DNA helicase recg [Caldicellulosiruptor kronotskyensis 2002] gi|312203005|gb|ADQ46332.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor kronotskyensis 2002] Length = 679 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 233/615 (37%), Positives = 367/615 (59%), Gaps = 23/615 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR--RPYKILLNDGTGE 100 DLL++ P ++D KI E+ + I + ++ +++ R + KI + D TG Sbjct: 32 DLLWHIPRKYLDYSRLKKIRELCDGEIESFVAKVA-GKPLEIETRSVKIIKIPVEDSTGV 90 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160 +T ++F + + +KNV EG +GKI++ I + +P + ++ ++ I VY Sbjct: 91 VTTVWFNQ--DYIKNVLKEGEVFCFSGKIERKGFYIEVKNPEFEKYDQHLIHTGRIVPVY 148 Query: 161 SLPTGLSVDLFKKIIVEALSR-----LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215 + GLS + + I+ L + + ++P +I QK + I A IH P Sbjct: 149 NSTEGLSQKVIRNIVNNLLQQVDGMLIDIIPPYIR----QKYNLSEINFAIKNIHFPENK 204 Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI-NVEGKIAQKILRNIPFSPT 274 E AR+RL ++E Q++LLL+++ +K GI I NV+ + ++ + +PF T Sbjct: 205 LSLEL---ARKRLVFEEFYLLQLSLLLLKENIEKNEGIKIENVQSSL-KEFEKLLPFELT 260 Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334 +Q+ + +I QD+ +M R++QGDVG GKT+VAL + A ++AG Q +MAP +LA Sbjct: 261 DAQKRVLAEIAQDLESTKQMNRLIQGDVGCGKTVVALASAYATIKAGYQVALMAPTEVLA 320 Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394 QHY KKY N + V ++ G+ P+ + L+ + HG ++IGTHAL QD +++ Sbjct: 321 LQHYNECKKYFDN-KFNVRLLIGSTPKKEKEIILKELEHGLCKMVIGTHALIQDDVKFKN 379 Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454 L L I DEQHRFGV QR++LT+K ++P++L+MTATPIPRTL L GD+DIS I + P G Sbjct: 380 LGLAITDEQHRFGVIQRVELTKKGSSPNILVMTATPIPRTLSLVLHGDLDISIIDQLPPG 439 Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 RK I T + + V +K L EG++ YWICP IEE + N +S VE SL E F Sbjct: 440 RKKILTYAVDESFRQRVYNFIKKQLDEGRQVYWICPLIEESETLNAKSAVEFAKSLKEGF 499 Query: 515 --TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 ++A +HG++S +++ +++ FK+G +L++TTV+EVGI+V +A++++IENAE FG Sbjct: 500 FKDYNVACLHGKLSAKERDKILNDFKDGHIHILVSTTVVEVGINVPNATVMVIENAERFG 559 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 LAQLHQLRGRVGRGE S CI L++ S+ + R+ + +++GF IAE DLK R G+ Sbjct: 560 LAQLHQLRGRVGRGEYQSYCI-LFNQSDSEIAKKRMIAITRSQNGFEIAEMDLKLRGPGD 618 Query: 633 ILGIKQSGMPKFLIA 647 + G KQ G+ F +A Sbjct: 619 LFGTKQHGIMNFKVA 633 >gi|261207034|ref|ZP_05921723.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TC 6] gi|289565332|ref|ZP_06445782.1| ATP-dependent DNA helicase RecG [Enterococcus faecium D344SRF] gi|294615352|ref|ZP_06695225.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1636] gi|260078662|gb|EEW66364.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TC 6] gi|289162822|gb|EFD10672.1| ATP-dependent DNA helicase RecG [Enterococcus faecium D344SRF] gi|291591726|gb|EFF23362.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1636] Length = 678 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 233/665 (35%), Positives = 379/665 (56%), Gaps = 27/665 (4%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 + L P++ GVG+K + L+ + DLL Y+P + D R ++EI Sbjct: 1 MRSLDDPITMLAGVGEKRAASLASL------GIQTIEDLLTYYPFRYEDIQER-NLNEIQ 53 Query: 66 EERIVTITGYISQ---HSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 ++ VT+ G + + F +K R ++++ ++ FF + LK Sbjct: 54 DQEKVTLKGIVVSPPVMNRFGYKKSRLQFRMMQEHDVFNVS--FFNQP--YLKEKVILSE 109 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 +I V GK R + + + D P+ S+ VDL KK E + Sbjct: 110 EIAVYGKWDA--KRKALNGMKILGSQTMDDFSPIYHVNKSIRQTTLVDLIKKGFQEYGT- 166 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 ++ E + +L++K A A +H P KD E A+ R+ ++E Q+ L Sbjct: 167 --LIEENLPNNLVEKYRLLDRASAVRSMHFP---KDHEENHQAKRRVVFEEFFLFQMRLQ 221 Query: 242 LMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 ++K K E G+ I + + ++ + +PF T +Q+ +I +D+ M R+LQG Sbjct: 222 GLKKAEKAETNGLEILYDVQKLKEFTQKLPFELTNAQKRVTNEICRDLRSPQHMQRLLQG 281 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA IA+ A V AG Q +M P ILAQQH E +++ ++ + ++TG+ Sbjct: 282 DVGSGKTVVAAIALYATVTAGFQGALMVPTEILAQQHMESLQQLFDPNEVTIALLTGSTK 341 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 RR+ LE++ G+ +++IGTHAL QD +++ L LVI DEQHRFGV QR L +K Sbjct: 342 AKERRELLEKLGQGEINVVIGTHALIQDGVEFQNLGLVITDEQHRFGVNQRKVLREKGWR 401 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 P VL MTATPIPRTL +T+ G++D+S I E PAGR PI+T + ++D V++ K L+ Sbjct: 402 PDVLFMTATPIPRTLAITAYGEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTKKELA 461 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFK 538 G + Y ICP IEE + + ++ VE + L E F + ++HG+M + +KE +M++FK Sbjct: 462 RGHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAFK 521 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 + ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P Sbjct: 522 DNQMQILVSTTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVANP 581 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 ++ R+ ++ T +GF+++E+DL+ R GE+ G +QSG+P+F +A ++LE+ Sbjct: 582 K-NELGVERMKIMTETTNGFVLSEKDLELRGPGEVFGFRQSGLPQFAVADLVTDGNVLEV 640 Query: 659 ARKDA 663 AR++A Sbjct: 641 AREEA 645 >gi|15675625|ref|NP_269799.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes M1 GAS] gi|71911332|ref|YP_282882.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS5005] gi|13622833|gb|AAK34520.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes M1 GAS] gi|71854114|gb|AAZ52137.1| ATP-dependent DNA helicase [Streptococcus pyogenes MGAS5005] Length = 671 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 248/672 (36%), Positives = 379/672 (56%), Gaps = 32/672 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L AP+S +G G K + K+ + DLL Y+P + D + + E+ Sbjct: 3 LTAPMSNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEK 56 Query: 69 IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 V ITG + ++ Q KR L G + + FF + L + G+++ V Sbjct: 57 AV-ITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQP--YLADKIELGQEVAVF 113 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL---SRLP 183 GK K+ I + + +D P VY + G+S K I A + L Sbjct: 114 GKWDATKSAITGMK---VLAQVEDDMQP----VYRVAQGISQSTLIKAIKSAFEIDAHLE 166 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 L E + LL+K ++A +H P KD A R+ ++EL Q+ L ++ Sbjct: 167 -LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVL 222 Query: 244 RKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 + + K E G+PI + + + ++PF T +Q+ ++ DIL DMS M R+LQGDV Sbjct: 223 KAENKSETNGLPILYSKRAMETKISSLPFILTNAQKRSLDDILSDMSSGAHMNRLLQGDV 282 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKT++A ++M AA AG Q+ +M P ILA+QHY +++ + I I+T M A Sbjct: 283 GSGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELFPDLSI--AILTSGMKAA 340 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 +R L IA+G +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR +K P Sbjct: 341 VKRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPD 400 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 VL+MTATPIPRTL +T+ G++D+S I E PAGRKPI T + ++ V+E +K L + Sbjct: 401 VLMMTATPIPRTLAITAFGEMDVSIIDELPAGRKPIMTRWVKHEQLGTVLEWVKGELQKD 460 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNG 540 + Y I P IEE + + ++ V L +F + +A++HGRM + +K+++M FK+ Sbjct: 461 AQVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDK 520 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S +L+ +P Sbjct: 521 KSHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGYKQSYAVLVANPK- 579 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + + R++++ T DGF++AE DLK R GEI G +QSG+P+F +A +LE AR Sbjct: 580 TDSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEAR 639 Query: 661 KDAKHILTQDPD 672 K + I++ DP+ Sbjct: 640 KVSAAIVS-DPN 650 >gi|291536243|emb|CBL09355.1| ATP-dependent DNA helicase RecG [Roseburia intestinalis M50/1] Length = 685 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 240/676 (35%), Positives = 359/676 (53%), Gaps = 31/676 (4%) Query: 11 APLSTFRGVGKKYSLFLSKI--INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 +PL +GVG K KI G D+L ++P ++I + E+ + Sbjct: 5 SPLREIKGVGAKTEELFHKIGVYTVG--------DILLHYPRTYIQYPQAKHVDEVLDGE 56 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 + G I++ ++K R +I + G L +YR M KN G Sbjct: 57 QAAVLGRITRTPV--VRKLRTMQITVTTISEMGASLELVWYRMPYM-KNNLKVGSTYIFY 113 Query: 127 GKIKKLKNRIIMVHPHYI----FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182 GK+ K R++M + + + V P VY+L GLS +L K + AL Sbjct: 114 GKVNKKNGRLVMEQAAMFTEEQYASMEQVFLP----VYTLTNGLSNNLVTKTVRAALGDE 169 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 + +++ + +K A IH P +D E AR RL +DE +++ Sbjct: 170 RLFMDYLPHAIREKYGLCEYNYAIRQIHFP---EDMETLITARRRLVFDEFFLFILSMQY 226 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +++ KE + E +++ +P+ T +Q+ A+ D+ +DM + M R++QGDV Sbjct: 227 QKEKHVKEKNEFVFAEDDFTDELIEQLPYELTNAQKKALADVKRDMRSETVMQRLIQGDV 286 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMP 360 GSGKT+VA +AMA G Q+ IMAP +LA+QHYE + + I + ++TG+M Sbjct: 287 GSGKTIVAFLAMADTAHNGYQSAIMAPTEVLARQHYESYQSMCEQFGLHIPIVLLTGSMT 346 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 +R+A E + +IIGTHAL Q+ Y L LVI DEQHRFGV+QR K T Sbjct: 347 AKQKRRAYEALEVYSNAMIIGTHALIQEKAIYQNLALVITDEQHRFGVRQRETFAGKGTE 406 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 PHVL+M+ATPIPRTL + GD+DIS I E PA R PIK ++ + ++ + Sbjct: 407 PHVLVMSATPIPRTLAIIIYGDLDISVIDEVPAKRLPIKNCVVDRRYRPKAYAFIEHEIR 466 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFK 538 EG +AY ICP +EE + +V + L E I I +HG+M K +MD F Sbjct: 467 EGHQAYVICPLVEESENMEAENVTDYAKRLREELPEDIVIGVLHGQMKAEQKNKIMDQFV 526 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 ++L++TTV+EVG++V +A++++IENAE FGLAQLHQLRGRVGRG+ S CI++ + Sbjct: 527 KNEIQVLVSTTVVEVGVNVPNATVMMIENAERFGLAQLHQLRGRVGRGDAQSYCIMV-NA 585 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 SKNS RL +L + DGF IA EDLK R G+ GI+QSG +FL+A S+L+ Sbjct: 586 SDSKNSMKRLDILNKSNDGFKIASEDLKLRGPGDFFGIRQSGEMQFLLADIYQDASVLQQ 645 Query: 659 ARKDAKHILTQDPDLT 674 A ++ + +L DP+L Sbjct: 646 ASEEVQDLLATDPELC 661 >gi|139473203|ref|YP_001127918.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes str. Manfredo] gi|134271449|emb|CAM29669.1| ATP-dependent DNA helicase [Streptococcus pyogenes str. Manfredo] Length = 671 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 248/672 (36%), Positives = 378/672 (56%), Gaps = 32/672 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L AP+S +G G K + K+ + DLL Y+P + D + + E+ Sbjct: 3 LTAPMSNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEK 56 Query: 69 IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 V ITG + ++ Q KR L G + + FF + L + G+++ V Sbjct: 57 AV-ITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQP--YLADKIELGQEVAVF 113 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL---SRLP 183 GK K+ I + + +D P VY + G+S K I A + L Sbjct: 114 GKWDATKSAITGMK---VLAQVEDDMQP----VYRVAQGISQSTLIKAIKSAFEIDAHLE 166 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 L E + LL+K ++A +H P KD A R+ ++EL Q+ L ++ Sbjct: 167 -LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVL 222 Query: 244 RKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 + + K E G+PI + + ++PF T +Q+ ++ DIL DMS M R+LQGDV Sbjct: 223 KAENKSETNGLPILYSKHAMETKISSLPFILTNAQKRSLDDILSDMSSGAHMNRLLQGDV 282 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKT++A ++M AA AG Q+ +M P ILA+QHY +++ + I I+T M A Sbjct: 283 GSGKTVIASLSMYAAYTAGFQSALMVPTEILAEQHYISLQELFPDLSI--AILTSGMKAA 340 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 +R L IA+G +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR +K P Sbjct: 341 VKRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPD 400 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 VL+MTATPIPRTL +T+ G++D+S I E PAGRKPI T + ++ V+E +K L + Sbjct: 401 VLMMTATPIPRTLAITAFGEMDVSVIDELPAGRKPIMTRWVKHEQLGTVLEWVKGELQKD 460 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNG 540 + Y I P IEE + + ++ V L +F + +A++HGRM + +K+++M FK+ Sbjct: 461 AQVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDK 520 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S +L+ +P Sbjct: 521 KSHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGHKQSYAVLVANPK- 579 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + + R++++ T DGF++AE DLK R GEI G +QSG+P+F +A +LE AR Sbjct: 580 TDSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEAR 639 Query: 661 KDAKHILTQDPD 672 K + I++ DP+ Sbjct: 640 KVSAAIVS-DPN 650 >gi|312127713|ref|YP_003992587.1| ATP-dependent DNA helicase recg [Caldicellulosiruptor hydrothermalis 108] gi|311777732|gb|ADQ07218.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor hydrothermalis 108] Length = 679 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 232/614 (37%), Positives = 366/614 (59%), Gaps = 21/614 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS-QHSSFQLQKRRPYKILLNDGTGEI 101 DLL++ P ++D KI E+ + I + ++ + + + + KI + D TG + Sbjct: 32 DLLWHIPRKYLDYSRLKKIRELCDGEIESFVAKVAGKPVEIETKSVKIIKIPVEDSTGVV 91 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161 T ++F + + +KNV EG +GKI++ I + +P + ++ ++ I VY+ Sbjct: 92 TTVWFNQ--DYIKNVLKEGEIFCFSGKIERKGFYIEVKNPEFEKYDQHLLHTGRIVPVYN 149 Query: 162 LPTGLSVDLFKKIIVEALSR-----LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216 GLS + + I+ L + + ++P +I QK + I A IH P Sbjct: 150 STEGLSQKVIRNIVNNLLKQVDGMLIDIIPPYIR----QKYNLSEINFAIKNIHFPENKL 205 Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI-NVEGKIAQKILRNIPFSPTK 275 E AR+RL ++E Q++LLL+++ +K GI I NV+ + ++ + +PF T+ Sbjct: 206 SLEL---ARKRLVFEEFYLLQLSLLLLKENIEKNEGIKIENVQSSL-KEFEKLLPFELTE 261 Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 +Q+ + +I QD+ +M R++QGDVG GKT+VAL + A ++AG Q +MAP +LA Sbjct: 262 AQKRVLAEIAQDLESTKQMNRLIQGDVGCGKTVVALASAYATIKAGYQVALMAPTEVLAL 321 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 QHY KKY N + V ++ G+ P+ + L+ + HG ++IGTHAL QD +++ L Sbjct: 322 QHYNECKKYFGN-KFNVRLLIGSTPKKEKEIILKELEHGLCKMVIGTHALIQDEVKFKNL 380 Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 L I DEQHRFGV QR++LT+K ++P++L+MTATPIPRTL L GD+DIS I + P GR Sbjct: 381 GLAITDEQHRFGVIQRVELTKKGSSPNILVMTATPIPRTLSLVLYGDLDISIIDQLPPGR 440 Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF- 514 K I T + + V +K L EG++ YWICP IEE + N +S VE SL E F Sbjct: 441 KKILTYAVDESFRQRVYNFIKKQLDEGRQVYWICPLIEESETLNAKSAVEFAKSLKEGFF 500 Query: 515 -TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 +I +HG++S +++ +++ FK+G +L++TTV+EVGI+V +A++++IENAE FGL Sbjct: 501 KDYNIGCLHGKLSAKERDKILNDFKDGHIHILVSTTVVEVGINVPNATVMVIENAERFGL 560 Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633 AQLHQLRGRVGRGE S CI L++ S+ + R+ + +++GF IAE DLK R G++ Sbjct: 561 AQLHQLRGRVGRGEHQSYCI-LFNQSDSEITKKRMIAITRSQNGFEIAEMDLKLRGPGDL 619 Query: 634 LGIKQSGMPKFLIA 647 G KQ G+ F +A Sbjct: 620 FGTKQHGVMNFKVA 633 >gi|257885669|ref|ZP_05665322.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,501] gi|294618523|ref|ZP_06698085.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1679] gi|257821525|gb|EEV48655.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,501] gi|291595223|gb|EFF26554.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1679] Length = 678 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 235/665 (35%), Positives = 379/665 (56%), Gaps = 27/665 (4%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 + L P++ GVG+K + L+ + DLL Y+P + D R ++EI Sbjct: 1 MRSLDDPITMLAGVGEKRAASLASL------GIQTIEDLLTYYPFRYEDIQER-NLNEIQ 53 Query: 66 EERIVTITGYISQ---HSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 ++ VT+ G + + F +K R ++++ ++ FF + LK Sbjct: 54 DQEKVTLKGIVVSPPVMNRFGYKKSRLQFRMMQEHDVFNVS--FFNQP--YLKEKVILSE 109 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 +I V GK R + + + D P+ S+ VDL KK E + Sbjct: 110 EIAVYGKWDA--KRKALNGMKILGSQTMDDFSPIYHVNKSIRQTTLVDLIKKGFQEYGT- 166 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 ++ E + +L++K A A +H P KD E A+ R+ ++E Q+ L Sbjct: 167 --LIEENLPNNLVEKYRLLDRASAVRSMHFP---KDHEENHQAKRRVVFEEFFLFQMRLQ 221 Query: 242 LMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 ++K K E G+ I + + ++ + +PF T +Q+ +I +D+ M R+LQG Sbjct: 222 GLKKAEKAETNGLEILYDVQKLKEFTQKLPFELTNAQKRVTNEICRDLRSPQHMQRLLQG 281 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA IA+ A V AG Q +M P ILAQQH E +++ ++ + ++TG+ Sbjct: 282 DVGSGKTVVAAIALYATVTAGFQGALMVPTEILAQQHMESLQQLFDPNEVTIALLTGSTK 341 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 RR+ LE++ G+ +I+IGTHAL QD +++ L LVI DEQHRFGV QR L +K Sbjct: 342 AKERRELLEKLEQGEINIVIGTHALIQDGVEFQNLGLVITDEQHRFGVNQRKVLREKGWR 401 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 P VL MTATPIPRTL +T+ G++D+S I E PAGR PI+T + ++D V++ K L+ Sbjct: 402 PDVLFMTATPIPRTLAITAYGEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTKKELA 461 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFK 538 G + Y ICP IEE + + ++ VE + L E F + ++HG+M + +KE +M++FK Sbjct: 462 RGHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAFK 521 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 + ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P Sbjct: 522 DNQMQILVSTTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVANP 581 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 ++ R+ ++ T +GF+++E+DL+ R GE+ G +QSG+P+F IA ++LE+ Sbjct: 582 K-NELGVERMKIMTETTNGFVLSEKDLELRGPGEVFGFRQSGLPQFAIADLVTDGNVLEV 640 Query: 659 ARKDA 663 AR++A Sbjct: 641 AREEA 645 >gi|213650299|ref|ZP_03380352.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 574 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 220/545 (40%), Positives = 324/545 (59%), Gaps = 20/545 (3%) Query: 138 MVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VLPEWIEK 191 M+HP Y D++ P ++ VY G+ +K+ +AL L + E + Sbjct: 9 MIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAIAELLPP 66 Query: 192 DLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALLLMRKQF 247 +L Q S+ EA +H P + D E PA+ RL +ELLA +++L +R Sbjct: 67 ELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSMLALRAGA 124 Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 ++ P++ + K+L ++PF PT +Q + +I +DM+ M+R++QGDVGSGKT Sbjct: 125 QRYHTQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGDVGSGKT 184 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 LVA +A A+ G Q +MAP +LA+QH + + + + V + G R+ Sbjct: 185 LVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKGKARQAQ 244 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHV 423 E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K PH Sbjct: 245 QEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQGFHPHQ 304 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VVLSEG 482 L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R E+I+R++ +EG Sbjct: 305 LIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRNACTTEG 364 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541 ++AYW+C IEE ++ + L +I ++HGRM +K++VM +FK G Sbjct: 365 RQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQAFKQGE 424 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLY PLS Sbjct: 425 LHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKSPLS 484 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 K + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A +++ ++ Sbjct: 485 KTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIPEVQR 544 Query: 662 DAKHI 666 A+HI Sbjct: 545 IARHI 549 >gi|56964070|ref|YP_175801.1| ATP-dependent DNA helicase RecG [Bacillus clausii KSM-K16] gi|56910313|dbj|BAD64840.1| ATP-dependent DNA helicase RecG [Bacillus clausii KSM-K16] Length = 681 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 246/685 (35%), Positives = 374/685 (54%), Gaps = 56/685 (8%) Query: 13 LSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70 ++ +GVG++ L+K I+ G DLL Y P + D + +ER V Sbjct: 8 VTAIKGVGEESGKLLNKMGILTVG--------DLLEYFPFRYEDYALKRPTEAAHDER-V 58 Query: 71 TITGYISQHSSFQLQKRRPYKILLN---DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 T+ G I +S + + ++ DG +T FF R LK+ G +TVTG Sbjct: 59 TMAGKIQNEASVRYYGKNKNRLTFRIEVDGV-LVTATFFNRA--FLKSKLQPGMDVTVTG 115 Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIE------AVYSLPTGLSVDLFKKIIVEALSR 181 K H + ++ F ++E VY ++ +K I A S Sbjct: 116 KWD----------AHRLTITGSELKFGIVEREGNLEPVYHSSGKVTSKALQKWIAAAFSA 165 Query: 182 LPV-----LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 LPE I K + EA +H P + E T AR R Y+ELL Sbjct: 166 YGSQIEDPLPESIRK----RYKLMGKGEALRHLHYPF---NREATKQARRRYVYEELLLF 218 Query: 237 QIALLLMRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+ + ++ + ++ G ++V+ +PF T +Q+ AI DI+ D+ RM Sbjct: 219 QLKMRAFKEAIRNQQGGGQLDVKEDDIAAFTSLLPFPLTGAQQRAIADIVSDIRSPLRMN 278 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R+LQGDVGSGKT VA MA V AGGQ +MAP ILA+QH I+ + + + ++ Sbjct: 279 RLLQGDVGSGKTAVAAACMAGVVGAGGQCALMAPTEILAEQHATTIEAWFEPLGLKTALL 338 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 G++ RR+ L++IA G+ I+IGTHAL Q+ + + L LVI DEQHRFGV+QR L Sbjct: 339 VGSVKGKKRRELLDQIAKGEVDIVIGTHALIQEDVVFSTLSLVITDEQHRFGVEQRRILR 398 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 K P VL MTATPIPRTL ++ GD+D+S + E PAGRKPI+T + ++ V+E + Sbjct: 399 DKGEHPDVLFMTATPIPRTLAISVFGDMDVSVLDEMPAGRKPIETYWVQHEMLERVLEFV 458 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + + +G++AY ICP IEE ++ + ++ ++ + L HF + + ++HGR+ +KE+V Sbjct: 459 RKEVKKGRQAYVICPLIEESEKLDVQNAIDFHSMLTAHFQGDAQVGLMHGRLQAAEKEAV 518 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M +F +L++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG+E S CI Sbjct: 519 MAAFARNELHILVSTTVVEVGVNVPNATVMVIYDADRFGLAQLHQLRGRVGRGDEKSYCI 578 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 L+ P ++ R+ ++ T DGF+++E DL+ R G+ G KQSG+P F +A +HD Sbjct: 579 LVAQPK-TEVGKERMRIMTETSDGFVLSERDLELRGPGDFFGSKQSGLPDFKLADV-VHD 636 Query: 654 -SLLEIARKDAKHI-----LTQDPD 672 LE AR+DA I L DP+ Sbjct: 637 YRTLEAARQDADRIFKANVLKTDPE 661 >gi|303236600|ref|ZP_07323181.1| ATP-dependent DNA helicase RecG [Prevotella disiens FB035-09AN] gi|302483104|gb|EFL46118.1| ATP-dependent DNA helicase RecG [Prevotella disiens FB035-09AN] Length = 698 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 245/678 (36%), Positives = 383/678 (56%), Gaps = 34/678 (5%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE-ISEERIVT 71 L GVG + LSK + + + DLL Y+P ++DR ISE + + V Sbjct: 8 LMYLSGVGPRKKEILSKELGI-----STYRDLLEYYPYKYVDRTKVYLISELVPDMPFVQ 62 Query: 72 ITGYISQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 I G I F++ KR+ + +DG G L++F + KN + G++ V GK Sbjct: 63 IKGRILSFEEFEMGKRKKRVVAHFSDGHGVCDLVWFNGSQYIYKN-YIIGKEYIVFGKPT 121 Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLP-----TGLSVDLFKKIIVEALSRL-PV 184 R HP + +N ++ Y G++ +K+ +++L Sbjct: 122 VYNGRFNFSHPDIDEASELQLNDMGMQPFYITTEKMKKAGITSRAIEKLTKTLIAKLNTT 181 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM- 243 LPE + + ++ S EA IH P+ +D T A+ RL ++EL Q+ +L Sbjct: 182 LPETLPDFITERLHLISRNEAVRKIHYPKSIED---TQRAKVRLKFEELFYVQLNILRYA 238 Query: 244 ---RKQFK----KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 R++++ K++G N N+PF T +Q+ +K+I DM +M R Sbjct: 239 SDHRRKYRGLYFKKVGAQFN------WFYAHNLPFELTNAQKRVMKEIRADMGSGQQMNR 292 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 +LQGDVGSGKTLVAL++M AV+ G QA +MAP ILA+QH + +K + + + +E++T Sbjct: 293 LLQGDVGSGKTLVALMSMLIAVDNGFQACLMAPTEILAEQHLQTLKDFLKGMNLRIELLT 352 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G + R++ L+ + G HII+GTHA+ +D +Q+ L L ++DEQHRFGV QR KL Sbjct: 353 GIVKGKKRKEVLDGLLDGSIHIIVGTHAIIEDKVQFNNLGLAVIDEQHRFGVAQRAKLWS 412 Query: 417 K-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 K PHVL+MTATPIPRTL +T GD+D+S I E P GRKPI+T+ + + + + Sbjct: 413 KNENPPHVLVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTIHKFDTQTVSLYDGI 472 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVM 534 + + G++ Y + P I+E ++ + +++ + +L E F S++ IHG+M D +KE+ M Sbjct: 473 RKQIQLGRQVYIVFPLIKESEKIDLKNLESGYEALKEVFPECSMSKIHGKMKDKEKEAEM 532 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F G ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG E S CIL Sbjct: 533 KLFVEGKTQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGAEQSYCIL 592 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHD 653 + + L+ + R+ ++ +T DGF IAE DLK R G++ G +QSG+ L IA Sbjct: 593 VTNQKLTTETRKRIEIMCDTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDG 652 Query: 654 SLLEIARKDAKHILTQDP 671 L+++AR +AK I+ DP Sbjct: 653 QLVQMARDEAKRIIEDDP 670 >gi|317969805|ref|ZP_07971195.1| ATP-dependent DNA helicase RecG [Synechococcus sp. CB0205] Length = 811 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 234/683 (34%), Positives = 372/683 (54%), Gaps = 33/683 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS RGVG K + L+ + + DL+ Y+P ++D +I+ + + T Sbjct: 117 PLSEVRGVGPKSATRLAAL------DLWLARDLVRYYPRDYLDYANLVRIAGLEPGKTAT 170 Query: 72 ITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFE--------G 120 I + + SF + IL L D TG I + F+ + + G Sbjct: 171 IVATVRRSHSFTSPRNPNLSILELHLADITGRIRVSKFFAGKRFSSPAWLKAQQRNYPVG 230 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-----FPLIEAVYSLPTGLSVDLFKKII 175 + ++G +K+ P S + + + VY L GL+ D + +I Sbjct: 231 ASVAISGLVKETPYGPAFQDPLMEVLESPNASVRSDQIGRLLPVYGLTEGLTADRLRNLI 290 Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235 ++ + + L ++ + EA IH P S AR RL +DE L Sbjct: 291 RPVVAAAGQWGDPLPASLQAREGLVPLPEALLQIHGPTSQASL---SEARHRLVFDEFLL 347 Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI-PFSPTKSQESAIKDILQDMSQKNRM 294 Q+ LL R+Q + VEG + + PF T +Q+ + +I D+ + M Sbjct: 348 LQLGLLQRRRQLTSRPAPALAVEGDALLQAFLQLLPFPLTGAQQRVLAEIRADLRRDQPM 407 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R++QGDVGSGKT+VA+ A+ A+++G Q +MAP +LA+QHY + ++ + + Sbjct: 408 ARLVQGDVGSGKTVVAIAALLTAIDSGCQGALMAPTEVLAEQHYRKLCEWLPQLHVTCAL 467 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 +TG+ P RR+ L +A+G +++GTHAL +D +Q+ +L LV+VDEQHRFGV QR +L Sbjct: 468 LTGSTPLRRRRELLADLANGTLKMLVGTHALLEDPVQFQRLGLVVVDEQHRFGVHQRNRL 527 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 K PH+L MTATPIPRTL L+ GD+++S+I E P GR PI+T ++ DE Sbjct: 528 LDKGLQPHLLTMTATPIPRTLALSIHGDLEVSQIDELPPGRTPIRTSLLASADRDEAYSL 587 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKES 532 ++ ++ G++AY + P +EE ++ + RS V+ L E + + ++HGRM DK++ Sbjct: 588 IREQVALGQRAYVVLPLVEESEKLDLRSAVDVHQQLSEQVFPNLQVGLLHGRMPSADKQA 647 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 + +F +G ++L++TTV+EVG+DV +AS+++I++A+ FGLAQLHQLRGRVGRG S C Sbjct: 648 AITAFASGETQVLVSTTVVEVGVDVPEASVMVIDHADRFGLAQLHQLRGRVGRGAAASYC 707 Query: 593 ILLYHPPLSKN--SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 +L+ S+N + RL VL + DGF IAE DL+ R G++LG +QSG+P +A Sbjct: 708 LLVND---SRNVLARQRLEVLVRSNDGFEIAEMDLRLRGPGQVLGTRQSGLPDLALASLT 764 Query: 651 LHDSLLEIARKDAKHILTQDPDL 673 +LE AR+ A+ I+ +DPDL Sbjct: 765 DDGEVLEQARRVAQEIVAEDPDL 787 >gi|291538889|emb|CBL12000.1| ATP-dependent DNA helicase RecG [Roseburia intestinalis XB6B4] Length = 685 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 240/676 (35%), Positives = 359/676 (53%), Gaps = 31/676 (4%) Query: 11 APLSTFRGVGKKYSLFLSKI--INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 +PL +GVG K KI G D+L ++P ++I + E+ + Sbjct: 5 SPLREIKGVGAKTEELFHKIGVYTVG--------DILLHYPRTYIQYPQAKHVDEVLDGE 56 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 + G I++ ++K R +I + G L +YR M KN G Sbjct: 57 QAAVLGRITRTPV--VRKVRTMQITVTTISEMGASLELVWYRMPYM-KNNLKVGSTYIFY 113 Query: 127 GKIKKLKNRIIMVHPHYI----FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182 GK+ K R++M + + + V P VY+L GLS +L K + AL Sbjct: 114 GKVNKKNGRLVMEQAAMFTEEQYASMEQVFLP----VYTLTNGLSNNLVTKTVRAALGDE 169 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 + +++ + +K A IH P +D E AR RL +DE +++ Sbjct: 170 HLFMDYLPHAIREKYGLCEYNYAIRQIHFP---EDMETLITARRRLVFDEFFLFILSMQY 226 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +++ KE + E +++ +P+ T +Q+ A+ D+ +DM + M R++QGDV Sbjct: 227 QKEKHVKEKNEFVFAEDDFTDELIEQLPYELTNAQKKALADVKRDMRSETVMQRLIQGDV 286 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMP 360 GSGKT+VA +AMA G Q+ IMAP +LA+QHYE + + I + ++TG+M Sbjct: 287 GSGKTIVAFLAMADTAHNGYQSAIMAPTEVLARQHYESYQSMCEQFGLHIPIVLLTGSMT 346 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 +R+A E + +IIGTHAL Q+ Y L LVI DEQHRFGV+QR K T Sbjct: 347 AKQKRRAYEALEVYSNAMIIGTHALIQEKAIYQNLALVITDEQHRFGVRQRETFAGKGTE 406 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 PHVL+M+ATPIPRTL + GD+DIS I E PA R PIK ++ + ++ + Sbjct: 407 PHVLVMSATPIPRTLAIIIYGDLDISVIDEVPAKRLPIKNCVVDRRYRPKAYAFIEHEIR 466 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFK 538 EG +AY ICP +EE + +V + L E I I +HG+M K +MD F Sbjct: 467 EGHQAYVICPLVEESENMEAENVTDYAKRLREELPEDIVIGVLHGQMKAEQKNKIMDQFV 526 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 ++L++TTV+EVG++V +A++++IENAE FGLAQLHQLRGRVGRG+ S CI++ + Sbjct: 527 KNEIQVLVSTTVVEVGVNVPNATVMMIENAERFGLAQLHQLRGRVGRGDAQSYCIMV-NA 585 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 SKNS RL +L + DGF IA EDLK R G+ GI+QSG +FL+A S+L+ Sbjct: 586 SDSKNSMKRLDILNKSNDGFKIASEDLKLRGPGDFFGIRQSGEMQFLLADIYQDASVLQQ 645 Query: 659 ARKDAKHILTQDPDLT 674 A ++ + +L DP+L Sbjct: 646 ASEEVQDLLATDPELC 661 >gi|313886107|ref|ZP_07819842.1| putative ATP-dependent DNA helicase RecG [Porphyromonas asaccharolytica PR426713P-I] gi|312924453|gb|EFR35227.1| putative ATP-dependent DNA helicase RecG [Porphyromonas asaccharolytica PR426713P-I] Length = 697 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 241/696 (34%), Positives = 383/696 (55%), Gaps = 35/696 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRH-------YRPKI 61 L PL+ G+G K + +++ ++ + DLL+Y P + DR P + Sbjct: 4 LTTPLADLPGLGTKRAQLIAEELDLNT-----YRDLLYYIPYRYADRRVIYPIGSLMPSM 58 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 SE V I G + S+ L ++ L D TGE+ LL +++ ++ G Sbjct: 59 SE------VQIEGILQPFSAPSLGRKSSLSARLMDDTGEL-LLVWFKGLNYIQRSLTPGC 111 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS---VD-LFKKIIVE 177 K V GK++ N++ + HP + + + + VY L +D F ++ Sbjct: 112 KYIVYGKLQLFNNQLQITHPEIKPADKPNPSVGGYQPVYRTTERLKRARIDSAFLGRYID 171 Query: 178 ALSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235 L + P +PE + + L+ + + A IH+P + E A+ RL YDEL Sbjct: 172 QLLQSPYFSIPETLSEPLIAHRHLAPLQTAIRWIHHP---QSVEQAQVAKFRLKYDELFY 228 Query: 236 GQIAL--LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 + L L + ++ + E G ++ GK+ + +P+ T +Q+ +++I +D + + Sbjct: 229 LNLYLRRLAVMQRMRYE-GYRLDQVGKLFNSLYHALPYDLTGAQKRVLREIRRDTNSGAQ 287 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R+LQGDVGSGKTLVAL AM AV+ G QA ++AP ILAQQHYE I ++ + + + Sbjct: 288 MNRLLQGDVGSGKTLVALFAMLLAVDNGYQACMLAPTEILAQQHYETISEFVEGLDVSIA 347 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++TG+ RR+ L +A G I+IGTHA+ ++ + + KL + ++DEQHRFGV QR K Sbjct: 348 LLTGSSKTRERRETLSALADGSLSILIGTHAILEERVAFRKLGMAVIDEQHRFGVAQRSK 407 Query: 414 LTQKA--TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471 L K T PH+L+M+ATPIPRTL +T GD+++S I E P GRKPI TV I + + + Sbjct: 408 LWGKNVLTLPHILVMSATPIPRTLAMTMYGDLEVSVIDEMPPGRKPITTVQIAEKKKETL 467 Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDK 530 + ++ G++ Y + P IE +ES+F ++ + E F + +HGR+S DK Sbjct: 468 YSLINETINRGQQIYVVFPMIEGTEESDFANLEVGYKEYVERFGEKRVVYVHGRLSAEDK 527 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 M+ F +G +L+ATTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S Sbjct: 528 AEQMERFASGEVPILLATTVIEVGVNVPNATVMVINDAQRFGLAQLHQLRGRVGRGGDKS 587 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQP 649 CIL+ L ++ R+ + T+DGF IAEED++ R G++ G +QSG + IA P Sbjct: 588 YCILVTPDDLQGDAKQRIDTMVATQDGFKIAEEDMRLRGFGQMEGTRQSGTLAGIRIADP 647 Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685 + +LL + R D ++L P L + RI L Sbjct: 648 VVDYNLLALTRLDVNYLLDYSPLLDKPDTELYRINL 683 >gi|281492921|ref|YP_003354901.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. lactis KF147] gi|281376573|gb|ADA66059.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. lactis KF147] Length = 666 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 242/644 (37%), Positives = 367/644 (56%), Gaps = 28/644 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGE 100 DLL Y P + D R + E+ + TI G + ++ Q KR + +G Sbjct: 31 DLLLYFPFRYEDFASR-SVFELVDGEKATIIGTVVTPANVQYYGFKRNRLSFKIKEGEAV 89 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160 + + FF + L + G++I V GK ++ K +++ + + D +E VY Sbjct: 90 VAVSFFNQP--YLADKVEVGKEIAVYGKWEQAKQQLMGMK---VVAQVDDG----LEPVY 140 Query: 161 SLPTGLSVDLFKKIIVEALSR--LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 L G+ K+I + L LPE + + L++K + EA +H P +D Sbjct: 141 HLTAGMKQSQLVKVIHQVFESDLLSELPENLPEFLIKKYRLMNRQEAVLAMHFP---EDT 197 Query: 219 EWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKS 276 E A R+ ++EL Q+ L L K+ G+ + E G+I QKI +PF T + Sbjct: 198 EAHKQALRRVKFEELFMFQLKLQALKNKEKSGRAGLEVVFEQGEIDQKI-SELPFELTGA 256 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q SA+ +IL DM M R+LQGDVGSGKT+VA +AM AA A QA IM P ILA+Q Sbjct: 257 QLSALSEILTDMKSPYHMNRLLQGDVGSGKTVVASLAMYAACLANFQAAIMVPTEILARQ 316 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 H+ +K QI ++ + A RR+ L + G H+++GTHAL Q+ + +Y L Sbjct: 317 HFANLKALFPELQI--SLLVSGLKVAERREILADLVSGHTHMVVGTHALIQEGVDFYNLG 374 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 LVI DEQHRFGV QR L +K P VL+MTATPIPRTL +T+ GD+D+S I E P GR+ Sbjct: 375 LVITDEQHRFGVNQRKILREKGQNPDVLMMTATPIPRTLAITAFGDMDVSIIDELPKGRQ 434 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515 PI T + + EV+ +K +++ + Y+I P IEE + + ++ F L+E+F Sbjct: 435 PITTRWVKHEQFSEVLSWIKAEVAKDSQVYFISPLIEESETLDLKNAEALFAELNEYFGL 494 Query: 516 -SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + I ++HG+M + +K+ +M FK +L++TTVIEVG+DV +A+I++I +A+ FGL+ Sbjct: 495 FAKIGLLHGKMKNDEKDQIMQEFKAKKLDILVSTTVIEVGVDVPNATIMVIMDADRFGLS 554 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG + S IL+ +P S + R+ ++ T++GF++AEEDLK R GEI Sbjct: 555 QLHQLRGRVGRGTKKSYAILVANPK-SDSGKQRMKIMTETQNGFILAEEDLKMRGSGEIF 613 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL---TQDPDLTS 675 G++QSG+P+F+ A ++LE+ARK+A I + PDL + Sbjct: 614 GLRQSGLPEFIAADLVNDYNILEVARKEAVEIFKNADEFPDLIA 657 >gi|56808185|ref|ZP_00365964.1| COG1200: RecG-like helicase [Streptococcus pyogenes M49 591] gi|209559895|ref|YP_002286367.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes NZ131] gi|209541096|gb|ACI61672.1| Putative ATP-dependent DNA helicase [Streptococcus pyogenes NZ131] Length = 671 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 247/671 (36%), Positives = 378/671 (56%), Gaps = 30/671 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L AP+S +G G K + K+ + DLL Y+P + D + + E+ Sbjct: 3 LTAPMSNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEK 56 Query: 69 IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 V ITG + ++ Q KR L G + + FF + L + G+++ V Sbjct: 57 AV-ITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQP--YLADKIELGQEVAVF 113 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA--LSRLPV 184 GK K+ I + + +D P VY + G+S K I A ++ Sbjct: 114 GKWDATKSAITGMK---VLAQVEDDMQP----VYRVAQGISQSTLIKAIKSAFEINAHLE 166 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 L E + LL+K ++A +H P KD A R+ ++EL Q+ L +++ Sbjct: 167 LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVLK 223 Query: 245 KQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 + K E G+PI + + ++PF T +Q+ ++ DIL DMS M R+LQGDVG Sbjct: 224 AENKSETNGLPILYSKHAMETKISSLPFILTNAQKRSLDDILSDMSSGAHMNRLLQGDVG 283 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT++A ++M AA AG Q+ +M P ILA+QHY +++ + I I+T M A Sbjct: 284 SGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELFPDLSI--AILTSGMKAAV 341 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 +R L IA+G +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR +K P V Sbjct: 342 KRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPDV 401 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL +T+ G++D+S I E PAGRKPI T + ++ V+E +K L + Sbjct: 402 LMMTATPIPRTLAITAFGEMDVSVIDELPAGRKPIMTRWVKHEQLGTVLEWVKGELQKDA 461 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGT 541 + Y I P IEE + + ++ V L +F + +A++HGRM + +K+++M FK+ Sbjct: 462 QVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDKK 521 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S +L+ +P + Sbjct: 522 SHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGHKQSYAVLVANPK-T 580 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 + R++++ T DGF++AE DLK R GEI G +QSG+P+F +A +LE ARK Sbjct: 581 DSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640 Query: 662 DAKHILTQDPD 672 + I++ DP+ Sbjct: 641 VSAAIVS-DPN 650 >gi|313892557|ref|ZP_07826144.1| ATP-dependent DNA helicase RecG [Dialister microaerophilus UPII 345-E] gi|313118954|gb|EFR42159.1| ATP-dependent DNA helicase RecG [Dialister microaerophilus UPII 345-E] Length = 678 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 214/592 (36%), Positives = 344/592 (58%), Gaps = 10/592 (1%) Query: 88 RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN 147 R ++L D +TL +F + + K F +I GK++ L + + + Sbjct: 77 RLLSVILTDNINSVTLTYFNQSWK--KKQFNINEEILAYGKVEYLYGKYQISNAEIEAVP 134 Query: 148 SQDV-NFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206 +++ NF + +Y L G++ + +I AL + L E + ++L +++FP A Sbjct: 135 KENLKNFEKLVPIYPLTEGITATQMRSMIAFALKNVSNLKENLPIEILIRENFPDKLLAI 194 Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK-KEIGIPINVEGKIAQKI 265 +HNP+ K+ E AR+RLA++EL Q +L+++++ K GI GK+ + + Sbjct: 195 KTLHNPKNYKEKE---TARKRLAFEELFFMQAGILMLKEKRKINSYGIKCGPSGKLVKSV 251 Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 L PF TK Q+ A DI DM M R+LQGDVGSGKT +A + A VE G QA Sbjct: 252 LNKFPFELTKDQKKAFSDIENDMEDIEPMYRLLQGDVGSGKTAIAALTAAKIVENGYQAT 311 Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 IMAP +LA QHY+ +N + + ++GN+ + R L ++ G+ I+IGTHAL Sbjct: 312 IMAPTEVLASQHYKTFLNLYKNLSVEIAYLSGNIKNSEREVLLNKLKSGEIDILIGTHAL 371 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445 ++++++ L LVI DEQHRFGV+QR L K PHVL+MTATPIPRT+ L+ GD+D Sbjct: 372 IENNVKFAHLGLVITDEQHRFGVKQRELLETKGENPHVLVMTATPIPRTMALSVYGDLDA 431 Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 S I + P GRKP+KT +I + V+ +K + +G +AY +CP +EE ++++ + + Sbjct: 432 SVINQMPIGRKPVKTYVINDKLLQRVLIFIKKEIQKGHQAYIVCPLVEESEKTDLAAAIS 491 Query: 506 RFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 ++ L ++ S +I+G+M + +KE +M+ F ++L+AT+VIEVG++V +A+++ Sbjct: 492 VYDKLRKNIFSEYKCGLIYGKMKNSEKEQIMNDFCENKLQILVATSVIEVGVNVPNATVM 551 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623 ++ AE FGL+QLHQLRGRVGRG+ S CI LY ++ + RL+++ +GFL++E+ Sbjct: 552 LVYGAERFGLSQLHQLRGRVGRGKIQSYCI-LYTKNTNETTTLRLNIMTKINNGFLLSEK 610 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 DL R GE+ G Q GMP +A LLE AR A+ + + ++ S Sbjct: 611 DLMLRGSGELFGYHQHGMPDLKVANIIRDLPLLEKARNYAQKFIHSEKNIKS 662 >gi|188997024|ref|YP_001931275.1| ATP-dependent DNA helicase RecG [Sulfurihydrogenibium sp. YO3AOP1] gi|188932091|gb|ACD66721.1| ATP-dependent DNA helicase RecG [Sulfurihydrogenibium sp. YO3AOP1] Length = 799 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 233/664 (35%), Positives = 376/664 (56%), Gaps = 36/664 (5%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 D LF P+ + DR + KI ++ + T + K + IL D Sbjct: 123 DALFNLPNRYEDRRIK-KILKVKDGETGTFIAEVEDIKKVNKGKLKVEVILKQDNVR--F 179 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162 FF + L F +G+K+ + GK+ I ++ P I +D+ I VYSL Sbjct: 180 SAFFTHDSPYLFIAFRKGKKVKIFGKVSFFNKNISIIQPE-ILEPVEDI-IDRIAPVYSL 237 Query: 163 -------PTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215 TG +++ ++ + + + + + +++ D+L K +FP +++A +H P + Sbjct: 238 RGDSSVKTTGQTLNHLRRGMYKIVEKFSSVKDYMPDDILSKYNFPPLSKAIKNVHFPEDS 297 Query: 216 KDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271 D + + ++RL +DEL Q+A R +K I+V+ +N+PF Sbjct: 298 FDIDLLNNFQDIHQKRLIFDELFLLQLAQKYRRYLLQKHPSYKISVDPNFLTNFQKNLPF 357 Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331 T+ Q IK+IL D+ ++ M R++QGDVGSGKT+VA A A G QA +MAP Sbjct: 358 ELTQVQIRTIKEILADIQKEIPMNRMVQGDVGSGKTVVAATASLAVALNGYQAAVMAPTE 417 Query: 332 ILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 ILA QHY F+K Y ++ +I I+TG+M + +++ + + G+ I+IGTHAL + Sbjct: 418 ILAWQHYHNFKNFLKNYLKDYEIA--ILTGSMKTSEKKQVYKAVELGEIKILIGTHALLE 475 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDIS 446 + +++ L L +VDEQHRFGV+QR L +++ PHVL+MTATPIPRTL L + GD+DIS Sbjct: 476 EKLKFKNLALAVVDEQHRFGVEQRKALIERSDKMPHVLVMTATPIPRTLALANYGDLDIS 535 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 K+ + P GRKP+KTV++ + +++ E +K L++G++A+ + P I+E ++S+ +S E Sbjct: 536 KLDQLPKGRKPVKTVLLFDDEREKMYEIIKQELNKGRQAFVVYPLIQESEKSDLKSAEEG 595 Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + E F + ++HG+MS +K+ +M FK G +L++TTVIEVG+DV +A++++I Sbjct: 596 YKHWQERFPDKKVLLLHGKMSQEEKDEIMKQFKEGKAHILVSTTVIEVGVDVPNATVMVI 655 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP----PLSKN--------SYTRLSVLKN 613 E A FGL+Q+HQLRGR+GRG+ C L+ PL + + RL +L Sbjct: 656 EEAHRFGLSQIHQLRGRIGRGQYEGYCFLVVPANLKYPLKDSTKEKSRLKTLERLKILVK 715 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 T DGF IAE+DL+ R GEI G +QSG F IA +LE+A K+A+ ++ +DP+L Sbjct: 716 TTDGFEIAEKDLELRGTGEITGTRQSGESDFSIADLTRDKEILELATKEAEELIKKDPEL 775 Query: 674 TSVR 677 + R Sbjct: 776 ENHR 779 >gi|148269855|ref|YP_001244315.1| ATP-dependent DNA helicase RecG [Thermotoga petrophila RKU-1] gi|147735399|gb|ABQ46739.1| ATP-dependent DNA helicase RecG [Thermotoga petrophila RKU-1] Length = 779 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 234/634 (36%), Positives = 356/634 (56%), Gaps = 21/634 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLL + P + DR K++++ VT G I + + Q +L+DG + Sbjct: 140 DLLEFFPRDYEDRRKIFKLNDLLPGEKVTTQGKIVSVETKRFQNMNILTAVLSDGLVHVL 199 Query: 103 LLFFYRKTEMLKNVF--FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ----DVNFPL- 155 L +F E L+ G+++ VTG +K Y HN++ + + Sbjct: 200 LKWF--NQEYLQTYLKQLTGKEVFVTGTVKS-----NAYTGQYEIHNAEVTPKEGEYARR 252 Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 I +Y L +G+S +KI E + L L E + + +L+K+ + +A+ +H P Sbjct: 253 ILPIYRLTSGISQKQMRKIFEENIPSLCCSLKETLPERILEKRKLLGVKDAYYGMHFP-- 310 Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274 K F ARERLAY+EL Q+A +RK+ +K GIP +EGK+A++ ++++PF T Sbjct: 311 -KTFYHLEKARERLAYEELFVLQLAFQKIRKEREKHGGIPKKIEGKLAEEFIKSLPFKLT 369 Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334 SQ+ A ++I DM + M R+LQGDVGSGKT+VA +A+ EAG Q M P ILA Sbjct: 370 NSQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILA 429 Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394 QHY + I V ++ G + + K + +GQ ++IGTHAL Q+ + + Sbjct: 430 IQHYRRTIESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKN 489 Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454 L LVI+DEQHRFGV+QR L K L+M+ATPIPR++ L GD+D++ I E P G Sbjct: 490 LGLVIIDEQHRFGVKQREALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPG 549 Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 RK ++T+++P++R++E+ E ++ + +G +A+ + P IEE + N +S VE + L + Sbjct: 550 RKEVQTMLVPMDRVNEIYEFVRQEVMKGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEV 609 Query: 515 TSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 + ++HGR+S +K+ VM F G +L++T VIEVGIDV A++++IEN E FG Sbjct: 610 FPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTMVIEVGIDVPRANVMVIENPERFG 669 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 LAQLHQLRGRVGRG + + C L+ + + + RL DGF IAE DLK R GE Sbjct: 670 LAQLHQLRGRVGRGGQEAYCFLVVG-DVGEEAMERLRFFTLNTDGFKIAEYDLKTRGPGE 728 Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666 G+KQ G+ F +A LLE AR+D + I Sbjct: 729 FFGVKQHGLSGFKVADLYRDLKLLEWAREDVQEI 762 >gi|86158152|ref|YP_464937.1| ATP-dependent DNA helicase RecG [Anaeromyxobacter dehalogenans 2CP-C] gi|85774663|gb|ABC81500.1| ATP-dependent DNA helicase RecG [Anaeromyxobacter dehalogenans 2CP-C] Length = 772 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 230/636 (36%), Positives = 346/636 (54%), Gaps = 11/636 (1%) Query: 49 PSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFY 107 P ++ DR +ISE+ T+ G ++ +++ +P K+ + +G + L+FF Sbjct: 113 PRAYQDRTALRRISELRVGDEATVLGTVAHVRIQRMRSGKPLLKVGVQEGGSALELVFFN 172 Query: 108 RKTEMLKNVFFEGRKITVTGKIKK-LKNRIIMVHPHYIFHNSQD-VNFPLIEAVYSLPTG 165 LK F G + +GK+ + R M P + D NF I VY P Sbjct: 173 PPPWRLKQ-FAAGESLLCSGKVTEGFGARRQMSQPEVEKVQAGDSANFGRIVPVYPGPAD 231 Query: 166 LSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEW 220 +K++ + L P + + DL ++ AEA H P D E Sbjct: 232 YQHPALRKLMKRLVDELVPAAVDDLPADLRARRELVGRAEALREAHFPPPGTDPLRAAER 291 Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280 +PA RL ++EL Q+AL + R+ + E GI + + + +PF T +QE A Sbjct: 292 VTPAFRRLVFEELFFLQLALAMRRRGVRAEAGIAFDASPAALARAVEPLPFRLTGAQERA 351 Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340 + +I +DM++ M R+LQGDVGSGKT VA AM AV +G QA +M P ILA QH Sbjct: 352 LAEIARDMAEPEPMNRLLQGDVGSGKTAVAFAAMMLAVRSGWQAALMVPTEILAGQHART 411 Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400 + ++ + + V ++ + +R+A +A G+A I +GTHAL + ++ + +L LV+V Sbjct: 412 LSRWLEGRGVEVALVGASARGKGQREARAAVAEGRARIAVGTHALLEQAVGFERLGLVVV 471 Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460 DEQHRFGV QR L K P VL+MTATPIPRTL L GD+D SKI E P GR P+ T Sbjct: 472 DEQHRFGVMQRASLISKGRRPDVLVMTATPIPRTLALAFYGDLDQSKIGELPPGRTPVTT 531 Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIA 519 + ++ + L G++ Y + P +EE ++++ L + F I Sbjct: 532 RLFGDSQRKAAYALARGELEAGRQVYVVYPLVEESEKTDLADATTGATELAKVFPGHEIG 591 Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579 ++HGRM +K+ VMD F+ G ++L+ATTVIEVG+DV +AS++I+E+AE FGL+QLHQL Sbjct: 592 LLHGRMKPDEKQRVMDRFRAGELQVLVATTVIEVGVDVPNASVMIVEHAERFGLSQLHQL 651 Query: 580 RGRVGRGEEISSCILLYH-PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638 RGRVGRG S C+LL H + RL ++ T+DGF IA DL+ R GE+LG +Q Sbjct: 652 RGRVGRGAAKSFCLLLAHFRRAGDEARERLRAMEETQDGFEIARVDLRIRGPGELLGTRQ 711 Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 SG +A +++LE AR++A ++ +DPDL Sbjct: 712 SGQKLLDVADLYRDEAILEEAREEAFGLVERDPDLA 747 >gi|306826760|ref|ZP_07460062.1| DNA helicase RecG [Streptococcus pyogenes ATCC 10782] gi|304431049|gb|EFM34056.1| DNA helicase RecG [Streptococcus pyogenes ATCC 10782] Length = 671 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 248/672 (36%), Positives = 378/672 (56%), Gaps = 32/672 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L AP+S +G G K + K+ + DLL Y+P + D + + E+ Sbjct: 3 LTAPMSNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEK 56 Query: 69 IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 V ITG + ++ Q KR L G + + FF + L + G+++ V Sbjct: 57 AV-ITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQP--YLADKIELGQEVAVF 113 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL---SRLP 183 GK K+ I + + +D P VY + G+S K I A + L Sbjct: 114 GKWDATKSAITGMK---VLAQVEDDMQP----VYRVAQGISQSTLIKAIKSAFEIDAHLE 166 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 L E + LL+K ++A +H P KD A R+ ++EL Q+ L ++ Sbjct: 167 -LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVL 222 Query: 244 RKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 + + K E G+PI + + ++PF T +Q+ ++ DIL DMS M R+LQGDV Sbjct: 223 KAENKSETNGLPILYSKHAMETKISSLPFILTNAQKRSLDDILSDMSSGAHMNRLLQGDV 282 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKT++A ++M AA AG Q+ +M P ILA+QHY +++ + I I+T M A Sbjct: 283 GSGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELFPDLSI--AILTSGMKAA 340 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 +R L IA+G +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR +K P Sbjct: 341 VKRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPD 400 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 VL+MTATPIPRTL +T+ G++D+S I E PAGRKPI T + ++ V+E +K L + Sbjct: 401 VLMMTATPIPRTLAITAFGEMDVSVIDELPAGRKPIMTRWVKHEQLGTVLEWVKGELQKD 460 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNG 540 + Y I P IEE + + ++ V L +F + +A++HGRM + +K+++M FK+ Sbjct: 461 AQVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDK 520 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S +L+ +P Sbjct: 521 KSHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGHKQSYAVLVANPK- 579 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + + R++++ T DGF++AE DLK R GEI G +QSG+P+F +A +LE AR Sbjct: 580 TDSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEAR 639 Query: 661 KDAKHILTQDPD 672 K + I++ DP+ Sbjct: 640 KVSAAIVS-DPN 650 >gi|24380195|ref|NP_722150.1| putative ATP-dependent DNA helicase, RecG [Streptococcus mutans UA159] gi|24378200|gb|AAN59456.1|AE015010_5 putative ATP-dependent DNA helicase, RecG [Streptococcus mutans UA159] Length = 671 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 243/635 (38%), Positives = 365/635 (57%), Gaps = 27/635 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL----QKRRPYKILLNDGT 98 DLL Y+P + D + + + E+ V +TG + ++ Q + R +KI ++ Sbjct: 31 DLLLYYPFRYEDFKAKSVLDLLDGEKAV-VTGKVVTPANVQYYGFKRNRLSFKIKQDEAV 89 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 I + FF + L++ + I + GK + K+ + + I D P Sbjct: 90 --IAVSFFNQP--YLQDKVELDQDIAIFGKWDQKKSALTGMK---ILAQVTDDMQP---- 138 Query: 159 VYSLPTGLSVDLFKKIIVEALSR--LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216 VY + G+S K I A L L E + + LL K A +H P K Sbjct: 139 VYHVAQGISQSALIKAIQSAFEAGYLRFLSENLPQVLLNKYRLLDRQTATRAMHFP---K 195 Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTK 275 D E A R+ ++EL Q+ L +++ K E G+ I + + +PF+ T Sbjct: 196 DLEEYKQALRRIKFEELFYFQLNLQVLKANNKSESNGLLITYDHDQVVAKIAALPFALTN 255 Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 +Q+ ++ +IL DM M R+LQGDVGSGKT++A +AM AA AG Q+ +M P ILA+ Sbjct: 256 AQKRSLDEILADMKSGAHMNRLLQGDVGSGKTVIASLAMYAAYSAGLQSALMVPTEILAE 315 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 QHYE ++ T ++ + ++T M A RR AL IA G +I+GTHAL Q+ + Y+KL Sbjct: 316 QHYESLR--TLFPELSIALLTSGMKAAVRRSALAAIADGSVDMIVGTHALIQEGVDYHKL 373 Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 LVI DEQHRFGV+QR +K P VL+MTATPIPRTL +T+ G++D+S I E PAGR Sbjct: 374 GLVITDEQHRFGVKQRRLFREKGENPDVLMMTATPIPRTLAITAFGEMDVSLIDELPAGR 433 Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 KPI T + ++D+V+ +K L + ++ Y I P IEE + + ++ V L +F Sbjct: 434 KPIVTRWVKHEQLDKVLPWVKEQLKKKEQVYVISPLIEESETLDLKNAVALEEDLKAYFA 493 Query: 516 SS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 SS IA++HGRM + +KE++M +FK G+ +L++TTVIEVG++V +A+I+II +A+ FGL Sbjct: 494 SSANIALMHGRMKNDEKEAIMQAFKKGSIDILVSTTVIEVGVNVPNATIMIIMDADRFGL 553 Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633 +QLHQLRGRVGRGE+ S IL+ +P + R+ ++ T DGF++AEEDLK R GEI Sbjct: 554 SQLHQLRGRVGRGEKRSYAILVANPK-TDTGKNRMRIMTKTTDGFVLAEEDLKMRGSGEI 612 Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668 G++QSG+P+F +A +LE ARK A I+ Sbjct: 613 FGVRQSGIPEFQVADIVEDYPILEEARKVASQIVA 647 >gi|255015905|ref|ZP_05288031.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 2_1_7] gi|262384186|ref|ZP_06077322.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 2_1_33B] gi|262295084|gb|EEY83016.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 2_1_33B] Length = 698 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 243/670 (36%), Positives = 371/670 (55%), Gaps = 21/670 (3%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG K + L K A + + DLLFY P +IDR K++EIS + + G I Sbjct: 14 GVGPKKADILQK-----EAGISSYEDLLFYFPYKYIDRSRFYKVAEISGNMPYIQLKGQI 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 + + + +DGTG I L++F + + + + + V GK + + Sbjct: 69 LYFDTLGEGRSKRLVGKFSDGTGTIDLVWF-KGLNYVTDKYRPNTEYIVFGKPTEFGHTY 127 Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190 + HP D + Y+ + ++ L + LPE + Sbjct: 128 NIPHPDIDSMEQADQVANGLTPFYNTSEKMKKSFLNSRAIQNLQYTLLSWLNWELPETLS 187 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 D+L++ S+ EA IH P A A+ RL +DEL Q+ +L K + Sbjct: 188 PDVLKRIHMMSMTEAMRNIHFPESAAKLR---DAQLRLKFDELFFIQLNILRTASVRKLK 244 Query: 251 I-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 + GI G + +PF T +Q+ +++I DM +M R+LQGDVGSGKTL Sbjct: 245 LKGIVFPTVGHYFNTFYKEYLPFELTNAQKRVVREIRIDMGSGRQMNRLLQGDVGSGKTL 304 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 V L++M A++ QA +MAP ILA QHY I + ++ + V ++TG+ + R K L Sbjct: 305 VGLLSMLLAIDNHCQACMMAPTEILATQHYATIMGFLKDMDVKVALLTGSTKKKERDKIL 364 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAPHVLLMT 427 IA G+ I+IGTHAL ++++ + L L I+DEQHRFGV+QR +L T+ A PHVL+MT Sbjct: 365 PAIASGEIQIVIGTHALIEETVVFSSLGLAIIDEQHRFGVEQRSRLWTKNAIVPHVLVMT 424 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T GD+D+S I E P GRKPI+T+ N+ ++ E L+ + +G++ Y Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTLHRYDNKKAQLYEFLRKEIQKGRQVYV 484 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 + P IE ++ +++ + F + E F + ++HGRM DK++ M F +G ++L+ Sbjct: 485 VYPLIEGNEKLDYKDLEAGFETFKEVFPEYKVCMVHGRMKAADKDTEMQKFISGEAQILM 544 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG E S CIL+ LS ++ Sbjct: 545 ATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGRGAEQSYCILVSSYKLSNDTRK 604 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKH 665 RL ++ N+ +GF IAE DL+ R G++ G +QSG L IA +L+ AR A+ Sbjct: 605 RLEIMVNSTNGFEIAEADLRLRGHGDLEGTRQSGEGIDLKIADLAADGQILQYARDIAQG 664 Query: 666 ILTQDPDLTS 675 +L +DP+L S Sbjct: 665 VLDEDPELLS 674 >gi|167769311|ref|ZP_02441364.1| hypothetical protein ANACOL_00636 [Anaerotruncus colihominis DSM 17241] gi|167668279|gb|EDS12409.1| hypothetical protein ANACOL_00636 [Anaerotruncus colihominis DSM 17241] Length = 680 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 241/680 (35%), Positives = 362/680 (53%), Gaps = 33/680 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 ++T RGVG++ + L+++ DLL ++P +ID ++ +++ + Sbjct: 9 VATLRGVGEQRAQALARL------GIVTVEDLLLHYPRGYIDLTAPCEVMSAPLDQVCAV 62 Query: 73 TG-YISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRK--TEMLK---NVFFEGRKITV 125 I + +L+ R YK++ D +G + L FF K + LK F GR + Sbjct: 63 RATVIKKGRETRLRGGLRLYKVIAADDSGVLELTFFNTKFTVDALKIDEPYLFYGR---M 119 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 G + + + R V+P + + P I AVY L GL+ F ++ +AL+R P L Sbjct: 120 EGTLLRREMRAPAVYP-------ERADQPFI-AVYPLTEGLTQKAFANLVEQALARAPRL 171 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 PE I + + I +A IH P A E A+ RL ++EL + L+R Sbjct: 172 PERIPETVRAGNGLEGIGQAVRDIHRPSDAAALER---AKRRLIFEELFMLAAGVGLLRT 228 Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + E P+ A +PF T +Q AI D+ D+ + R++QGDVGSG Sbjct: 229 RARTEQAAPMQPHSLKA--FYTALPFELTGAQRRAIADLTDDLQKPTPANRLVQGDVGSG 286 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA A +G Q+ +MAP +LA+QHYE +K + + ++ G++ A +R Sbjct: 287 KTMVAAAGAYFAFLSGAQSAMMAPTELLARQHYEGLKPLCEKLGMKTALLIGSLTPAQKR 346 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + G+ + GTHAL + + L LVI DEQHRFGV QR KL +K H L+ Sbjct: 347 AVYNALETGEIDLCFGTHALISQGVHFMNLGLVITDEQHRFGVAQRAKLRRKGRCAHTLV 406 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 M+ATPIPRTL L G++DIS I E P GR P+ T I + + ++ L G +A Sbjct: 407 MSATPIPRTLALMIYGELDISVIDELPPGRSPVLTYKISSGKRERAFGFIRKHLDRGLQA 466 Query: 486 YWICPQIEEKKES-NFRSVVERFNSLHE-HFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542 Y +CP++E +E + E L FT ++ ++HGRM +KE VM+SF+ G Sbjct: 467 YIVCPRVEAGEEDMGLHAATEYMMDLSSGAFTGYTVGLLHGRMKASEKERVMESFQRGEI 526 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 +LL++TTV+EVG+DV +A I++IENAE FGL+QLHQLRGRVGRG+E S CILL S+ Sbjct: 527 QLLVSTTVVEVGVDVPNAVIMMIENAERFGLSQLHQLRGRVGRGKEQSYCILLSD-SRSE 585 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662 + RL ++ T DGF IAE DLK R G LG +Q G+P+ IA + AR+ Sbjct: 586 ETVERLKIMCKTSDGFAIAEYDLKTRGPGNFLGQEQHGLPRLRIADLVTDADTVTQARES 645 Query: 663 AKHILTQDPDLTSVRGQSIR 682 A++IL DP L + ++R Sbjct: 646 AEYILAADPTLCAPEHAALR 665 >gi|293556809|ref|ZP_06675370.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1039] gi|291600893|gb|EFF31184.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1039] Length = 678 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 234/665 (35%), Positives = 379/665 (56%), Gaps = 27/665 (4%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 + L P++ GVG+K + L+ + DLL Y+P + D R ++EI Sbjct: 1 MRSLDDPITMLAGVGEKRAASLASL------GIQTIEDLLTYYPFRYEDIQER-NLNEIQ 53 Query: 66 EERIVTITGYISQ---HSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 ++ VT+ G + + F +K R ++++ ++ FF + LK Sbjct: 54 DQEKVTLKGIVVSPPVMNRFGYKKSRLQFRMMQEHDVFNVS--FFNQP--YLKEKVILSE 109 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 +I V GK R + + + D P+ S+ VDL KK E + Sbjct: 110 EIAVYGKWDA--KRKALNGMKILGSQTMDDFSPIYHVNKSIRQTTLVDLIKKGFQEYGT- 166 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 ++ E + +L++K A A +H P KD E A+ R+ ++E Q+ L Sbjct: 167 --LIEENLPNNLVEKYRLLDRASAVRSMHFP---KDHEENHQAKRRVVFEEFFLFQMRLQ 221 Query: 242 LMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 ++K K E G+ I + + ++ + +PF T +Q+ +I +D+ M R+LQG Sbjct: 222 GLKKAEKAETNGLEILYDVQKLKEFTQKLPFELTNAQKRVTNEICRDLRSPQHMQRLLQG 281 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA IA+ A V AG Q +M P ILAQQH E +++ ++ + ++TG+ Sbjct: 282 DVGSGKTVVAAIALYATVTAGFQGALMVPTEILAQQHMESLQQLFDPNEVTIALLTGSTK 341 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 RR+ LE++ G+ +++IGTHAL QD +++ L LVI DEQHRFGV QR L +K Sbjct: 342 AKERRELLEKLEQGEINVVIGTHALIQDGVEFQNLGLVITDEQHRFGVNQRKVLREKGWR 401 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 P VL MTATPIPRTL +T+ G++D+S I E PAGR PI+T + ++D V++ K L+ Sbjct: 402 PDVLFMTATPIPRTLAITAYGEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTKKELA 461 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFK 538 G + Y ICP IEE + + ++ VE + L E F + ++HG+M + +KE +M++FK Sbjct: 462 RGHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAFK 521 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 + ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P Sbjct: 522 DNQMQILVSTTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVANP 581 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 ++ R+ ++ T +GF+++E+DL+ R GE+ G +QSG+P+F IA ++LE+ Sbjct: 582 K-NELGVERMKIMTETTNGFVLSEKDLELRGPGEVFGFRQSGLPQFAIADLVTDGNVLEV 640 Query: 659 ARKDA 663 AR++A Sbjct: 641 AREEA 645 >gi|296315116|ref|ZP_06865057.1| ATP-dependent DNA helicase RecG [Neisseria polysaccharea ATCC 43768] gi|296838029|gb|EFH21967.1| ATP-dependent DNA helicase RecG [Neisseria polysaccharea ATCC 43768] Length = 680 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 226/600 (37%), Positives = 339/600 (56%), Gaps = 7/600 (1%) Query: 79 HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138 H + R+ + + D +G + L F + G++I G+IK M Sbjct: 65 HQEVTFKPRKQLIVQIADDSGSVLFLRFIHFYAGHQKQTAAGKRIRAVGEIKHGFYGDEM 124 Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 +HP + L VY GL+ ++II AL P L + + LL + Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182 Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 P +AE+ ++H+P + + T PA +RL +DELLA Q+++ L R++ Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGSAAA 242 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + G + Q + R +PF+ T +QE+ + ++ DM+Q + M R+LQGDVGSGKT+VA ++ Sbjct: 243 LRGNGVLTQALRRALPFALTDAQENVLAEVQTDMAQTHPMHRLLQGDVGSGKTIVAALSA 302 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A+E+G Q +MAP ILA+QH+ K++ + I V + G++ + + +A ++A G Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 I +GTHALF D + ++ L L IVDEQHRFGV QRL L K H L+M+ATPIPRT Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I + P GR PIKT ++ R EV + +G++AYW+CP IEE Sbjct: 423 LAMSFFADLDVSVIDKLPPGRTPIKTRLVNNVRRTEVEGFVLNTCRKGRQAYWVCPLIEE 482 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + ++ E L +I ++HGRM +K VM F G +L+ATTVIEV Sbjct: 483 SETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEV 542 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G+DV +A++++IE+AE GLAQLHQLRGRVGRG S C+LL+ PL + + RL V+ Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA +DL R GE LG +QSG+P A+ E LLE AR+ A ++ Q+P++ Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQAREIAPILIEQNPEI 662 >gi|167630218|ref|YP_001680717.1| ATP-dependent DNA helicase recg, putative [Heliobacterium modesticaldum Ice1] gi|167592958|gb|ABZ84706.1| ATP-dependent DNA helicase recg, putative [Heliobacterium modesticaldum Ice1] Length = 828 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 241/667 (36%), Positives = 374/667 (56%), Gaps = 21/667 (3%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75 RGVG + + L K+ G A DLLF+ P +IDR I++I VT+ G Sbjct: 156 LRGVGPQRAALLKKL---GIAT---VRDLLFHLPHRYIDRSRLMSIAQIRYPGDVTVAGV 209 Query: 76 ISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 I + Q RR ++ ++DG+G + ++ F RK L + G + V+GK++ Sbjct: 210 IRAYQ--QWNPRRGLAVIKGQIDDGSGLLPIVLFNRK--HLPAKYPPGTAVVVSGKVEFR 265 Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEK 191 + ++ ++ I VY GL+ + + + L + P L + + Sbjct: 266 YGKAELLVEEMENQAEAGLHTNRIIPVYPATEGLNQRFLRGLYGQVLDKYAPSLIDPLPT 325 Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251 + K PS+ EA IH P + E R ++A++E+ A +R+Q + I Sbjct: 326 PVAAKVKLPSLVEAVRQIHFP---ESLEAAEAGRRKVAFNEIFLLSTAWRYVRRQKQGRI 382 Query: 252 -GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310 G+ + Q+ +P++ T +Q+ I +I DM M R+LQGDVG+GKT+VA Sbjct: 383 EGVRHQPAREELQRFWSLLPYTLTGAQQRVISEIEADMEADRPMHRLLQGDVGAGKTVVA 442 Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370 A+ AV +G QA +MAP +LA+QH + N + V +TG+M + R + L Sbjct: 443 ASAVVKAVASGYQAALMAPTEVLAEQHAINWQSLLANMAMPVAHLTGSMGRRRREEVLRG 502 Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430 +A G +++GTHAL Q + + +L LVI+DEQHRFGV+QR L K+ A +L+MTATP Sbjct: 503 LADGSIPVVVGTHALLQKEVTFRRLGLVIIDEQHRFGVRQRAVLKGKSEAADLLVMTATP 562 Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490 IPRTL +T GD+D+S + E+P GR+ +KT + + + ++ ++ G +AY +CP Sbjct: 563 IPRTLAMTVYGDLDVSILDERPPGRRQVKTHHVGSDAWPRIYRLMRREVAAGHQAYVVCP 622 Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIA--IIHGRMSDIDKESVMDSFKNGTCKLLIAT 548 IE+ +ES+ +V ER+ +L + +A I+HGR+ +K +VM+ F G +L+AT Sbjct: 623 AIEDSEESDLAAVEERYATLSRNVFPDLAVGILHGRLKKEEKAAVMERFYRGQLHILVAT 682 Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608 TVIEVG+DV A+I++IE AE FGLAQLHQLRGRVGRG+ S CIL+ LS+ R+ Sbjct: 683 TVIEVGVDVPAATIMVIEGAERFGLAQLHQLRGRVGRGDAQSYCILVAD-KLSEEGRQRM 741 Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668 ++ ++DGF +AEEDLK R GE LG +QSG+P F A L+E+A++ A+H Sbjct: 742 RAMEASDDGFRLAEEDLKLRGPGEFLGTRQSGIPVFKAADLVRDADLMEMAKEWARHWSE 801 Query: 669 QDPDLTS 675 QDP+L + Sbjct: 802 QDPELEA 808 >gi|227824767|ref|ZP_03989599.1| ATP-dependent DNA helicase recG [Acidaminococcus sp. D21] gi|226905266|gb|EEH91184.1| ATP-dependent DNA helicase recG [Acidaminococcus sp. D21] Length = 688 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 247/681 (36%), Positives = 378/681 (55%), Gaps = 45/681 (6%) Query: 12 PLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHP--SSFIDRHYRPKISEIS-E 66 P+S+ +G+G K ++ I+ G DLL + P ++D + I E++ + Sbjct: 7 PVSSLKGIGPKKAIEFEGLGIVTIG--------DLLNHFPRQGCYLDYSHVKTIRELTLD 58 Query: 67 ERIVTITGYISQHSSFQLQKRRPYK------ILLNDGTGEITLLFFYRKTEMLKNVFFE- 119 + G I++ + KRR + ++++DGT + F + ++ + E Sbjct: 59 GSMQLFRGQIAR-----IIKRRSARNMRYASVVVSDGTAFAEIFLFGAQVYAVR--YLEN 111 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G + V GK+ + + + P I Y+L L+ + + +AL Sbjct: 112 GDDVLVIGKVGPGRTAKAVTQAVISKVKDEHPEAPGILPTYALSGSLTQKNVRSAVRQAL 171 Query: 180 ----SRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234 LP LP+WI ++KK F S EA IH P + E AR R ++EL Sbjct: 172 LLAKHHLPECLPDWI----MRKKGFLSRYEALEAIHFPPSLEKME---EARRRFIFEELF 224 Query: 235 AGQIALLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 Q LL R KK +GI + G + Q +L ++ F+ T+SQ+ A ++I DM Sbjct: 225 FIQCGLLHHRANIKKRSLGIKMGHCGPLWQSVLDHLGFTLTESQKKAWQEINDDMESPEP 284 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R+LQGDVGSGKT VA++A+A A E G Q +MAP ILA+QHY+ ++K + I Sbjct: 285 MNRLLQGDVGSGKTAVAMLALAKAAENGYQGCLMAPTEILAEQHYKEMQKVLEPLGIHTA 344 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++TG++ QA RR+ LE +A G ++GT+AL QD++ ++ L L I DEQHRFGV+QR + Sbjct: 345 LLTGSLGQAARREVLEGLADGTIKAVVGTYALIQDAVTFHSLALAITDEQHRFGVEQRSR 404 Query: 414 LTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 L+ K++ PHVL+MTATPIPRTL LT GD+D+S + P GRKPIKT+ + +V Sbjct: 405 LSGKSSYTPHVLVMTATPIPRTLALTVYGDLDVSLMKGLPPGRKPIKTLCYTDEKRADVY 464 Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDK 530 L + EG +AY + P IE + +S + + L + F I ++HGR+ +K Sbjct: 465 AGLIHQVKEGHQAYIVAPLIEGSDTVDAKSATDLYEELTQTFLKGIPCGLLHGRLKAEEK 524 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 ++VM F +G K+LIATTVIEVG++V +A+++IIE A+ FGLAQ+HQLRGRVGRG S Sbjct: 525 DAVMADFVSGKTKVLIATTVIEVGVNVPNATLMIIEGADRFGLAQMHQLRGRVGRGSSQS 584 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 C+LL + RL ++++ DGFL+AE+D++ R G++ G++Q G+P IA Sbjct: 585 YCVLLTGSN-QPQTLERLQIMRSCSDGFLLAEKDMELRGAGQLFGVRQHGLPDLYIADIL 643 Query: 651 LHDSLLEIARKDAKHILTQDP 671 L AR+ AK I+ DP Sbjct: 644 RDTDTLVEAREYAKRIMA-DP 663 >gi|149173513|ref|ZP_01852143.1| ATP-dependent DNA helicase RecG [Planctomyces maris DSM 8797] gi|148847695|gb|EDL62028.1| ATP-dependent DNA helicase RecG [Planctomyces maris DSM 8797] Length = 691 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 222/647 (34%), Positives = 368/647 (56%), Gaps = 30/647 (4%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 +PL P+ GVG L K+ DLL++ P S +D ++E+ E Sbjct: 4 SPLETPVQFLNGVGPDRGELLGKL------GIQTVEDLLWHLPRSVLDLTDVRPVNELEE 57 Query: 67 ERIVTITGYISQHSSFQLQKRRP-YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 ++ ++ G + + + + R ILL+ GTG + +F + + + FF+G+ + Sbjct: 58 DQPASVCGKVVDLDARTISRGRTITAILLDCGTGFLKGTWFNQPWVIKR--FFQGQLLMF 115 Query: 126 TGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP- 183 +GK K+ + + HP + + D LI YSL G+ + ++ + A+ Sbjct: 116 SGKPKRRSGKWEISHPQFQVLEEDLDDPQGLILPRYSLTEGIKMYQMRRFVRAAVEEYAQ 175 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 ++P+++ + + S +++A +H PR +++ R+ YD+LL Q+AL L Sbjct: 176 LIPDYLPESFREAHSLIPLSQAVIQMHKPRTMEEYH---AGVHRVIYDDLLEFQLALALR 232 Query: 244 RKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 R+ + P + V K+ +I R P+ T+ Q AI++I D++ M R+LQ DV Sbjct: 233 RRLWTCVDNAPLVKVTAKVDARIRRLFPYDFTEGQNQAIEEIKTDLASGRAMHRMLQADV 292 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 G+GKT +A+ AM A + G QAV+MAP +LA QH+E I K +++++ ++TG++ + Sbjct: 293 GAGKTAIAIYAMLAMIAGGNQAVLMAPTELLAVQHWETINKILKHSRVKHCLLTGSLSPS 352 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 R+ LE+IA G+ +I+GT A+ Q ++Y+ L LVI+DEQH+FGV QR + PH Sbjct: 353 ERKATLEQIASGEQQLIVGTQAVVQKDVRYHNLGLVIIDEQHKFGVMQRAHFSSDQNTPH 412 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER------LK 476 +L+MTATPIPR+L LT G++DIS TE P GR+P+ T +R+ +R L+ Sbjct: 413 MLVMTATPIPRSLCLTQFGELDISVNTELPPGRQPVMT-----SRVSTTPQRKKAWDFLR 467 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVER-FNSLH--EHFTSSIAIIHGRMSDIDKESV 533 ++ G++AY +CP+I+ + E N RS E + L E T+SI ++HG+M ++ + Sbjct: 468 TQIAAGRQAYIVCPRIDSEDEQNIRSSAEEVYRKLQKSELSTASIGLVHGQMDREERAEI 527 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M F GT ++L++TTV+EVG+DV +A++++I A+ FGL+QLHQLRGRV RG +C Sbjct: 528 MRQFHQGTIQVLVSTTVVEVGVDVPNATLMVILQADRFGLSQLHQLRGRVSRGLHRGNCF 587 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 L + S+++ RLSV++ T DGF IAE D + R G+I G +Q G Sbjct: 588 LFSYTE-SEDALNRLSVMEQTTDGFEIAEADFQARGPGDIFGTRQHG 633 >gi|293605612|ref|ZP_06687992.1| DNA helicase RecG [Achromobacter piechaudii ATCC 43553] gi|292815992|gb|EFF75093.1| DNA helicase RecG [Achromobacter piechaudii ATCC 43553] Length = 696 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 249/672 (37%), Positives = 362/672 (53%), Gaps = 28/672 (4%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS 77 G GK + K+ N G F+ + P + D IS + + G I+ Sbjct: 17 GAGKPMTDTERKLRNLGLVLPEDFV---LHLPLRYEDETRVVPISALRPGYAGQVEGEIT 73 Query: 78 QHSSFQLQKRRPYKILLNDGTGEITL--LFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 + S Q + RR L D TGEI L L FY + +V G+++ G+++ Sbjct: 74 K-SEVQYRPRRQLTATLADETGEIQLRWLNFYPSQQKQISV---GKRLRARGEVRSNLFG 129 Query: 136 IIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLL 194 MVHP + D P + VY GL ++ I +AL R L + + + L Sbjct: 130 RQMVHPRM---TNADAPLPTALTPVYPTTEGLPQLTLRRAIAQALDRAD-LSDTLPPEAL 185 Query: 195 QKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQ--FK 248 + P A +H P + + + PA R+ +DELLA Q++L R K Sbjct: 186 ARYDLPPFEPAIRALHTPAQGESEQALLDRVHPAWRRIKFDELLAQQLSLAAARAARRIK 245 Query: 249 KEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 + +P+ N G + K+ N+PF T +QE +++I D+++ M R+LQGDVGSGKT Sbjct: 246 EAESLPVRNEPGGLVAKLYANLPFKLTAAQERVVQEISADLAKPYPMHRLLQGDVGSGKT 305 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +VA IA A A+ G Q +MAP ILA+QH+ + + Q I V ++G++ RR+A Sbjct: 306 VVAAIAAAQAIAGGAQVALMAPTEILAEQHFRKLVSWLQPLGINVAWLSGSLTAKARREA 365 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------P 421 A G +++GT AL QD +++++L L IVDEQHRFGV QRL LT+K P Sbjct: 366 AAAAADGSVQLVVGTQALIQDHVEFHRLGLSIVDEQHRFGVGQRLALTKKGETVRGRIVP 425 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 H L M+ATPIPRTL +T D+D+S I E P GR P+ T ++ R +EVI + Sbjct: 426 HQLNMSATPIPRTLAMTFFADLDVSVIDELPPGRTPVLTKLVSDARREEVIAHVAQAARG 485 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540 G++ YW+CP +EE + ++ V+ + + I ++HGR+ +K +VM +F+ G Sbjct: 486 GQQVYWVCPLVEESEALELQTAVDTYEGMRTDLPDLRIGLVHGRLPQAEKAAVMQAFREG 545 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+LLY PL Sbjct: 546 EVDLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCVLLYQTPL 605 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S+ + RL + T DGF IA DL+QR GE LG +QSGM A E ++ E AR Sbjct: 606 SQVARERLRAMFETSDGFEIARRDLEQRGPGEFLGTRQSGMALLRFADLETDAAIAEDAR 665 Query: 661 KDAKHILTQDPD 672 A + + PD Sbjct: 666 DAAVWLRAEYPD 677 >gi|50914858|ref|YP_060830.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS10394] gi|50903932|gb|AAT87647.1| ATP-dependent DNA helicase [Streptococcus pyogenes MGAS10394] Length = 671 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 247/672 (36%), Positives = 378/672 (56%), Gaps = 32/672 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L AP+S +G G K + K+ + DLL Y+P + D + + E+ Sbjct: 3 LTAPMSNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEK 56 Query: 69 IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 V ITG + ++ Q KR L G + + FF + L + G+++ V Sbjct: 57 AV-ITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQP--YLADKIELGQEVAVF 113 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL---SRLP 183 GK K+ I + + +D P VY + G+S K I A + L Sbjct: 114 GKWDATKSAITGMK---VLAQVEDDMQP----VYRVAQGISQSTLIKAIKSAFEIDAHLE 166 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 L E + LL+K ++A +H P KD A R+ ++EL Q+ L ++ Sbjct: 167 -LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVL 222 Query: 244 RKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 + + + E G+PI + + ++PF T +Q+ ++ DIL DMS M R+LQGDV Sbjct: 223 KAENRSETNGLPILYSKHAMETKISSLPFILTNAQKRSLDDILSDMSSGAHMNRLLQGDV 282 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKT++A ++M AA AG Q+ +M P ILA+QHY +++ + I I+T M A Sbjct: 283 GSGKTVIASLSMYAAYTAGFQSALMVPTEILAEQHYISLQELFPDLSI--AILTSGMKAA 340 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 +R L IA+G +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR +K P Sbjct: 341 VKRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPD 400 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 VL+MTATPIPRTL +T+ G++D+S I E PAGRKPI T + ++ V+E +K L + Sbjct: 401 VLMMTATPIPRTLAITAFGEMDVSVIDELPAGRKPIMTRWVKHEQLGTVLEWVKGELQKD 460 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNG 540 + Y I P IEE + + ++ V L +F + +A++HGRM + +K+++M FK+ Sbjct: 461 AQVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDK 520 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S +L+ +P Sbjct: 521 KSHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGHKQSYAVLVANPK- 579 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + + R++++ T DGF++AE DLK R GEI G +QSG+P+F +A +LE AR Sbjct: 580 TDSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEAR 639 Query: 661 KDAKHILTQDPD 672 K + I++ DP+ Sbjct: 640 KVSAAIVS-DPN 650 >gi|146320180|ref|YP_001199891.1| RecG-like helicase [Streptococcus suis 98HAH33] gi|145690986|gb|ABP91491.1| RecG-like helicase [Streptococcus suis 98HAH33] Length = 635 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 232/640 (36%), Positives = 366/640 (57%), Gaps = 25/640 (3%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 LS G+G K + KI + N N DLL Y+P + D + I ++ + + Sbjct: 8 LSVLPGIGPKSAEKFLKI-SIQNIN-----DLLTYYPFRYEDFESK-SIYDLQDGEKAVV 60 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G + ++ Q + ++ + GE+ L + L + G+ I V GK K Sbjct: 61 VGEVVSPANVQYYGYKRNRLRFSMKQGEVVLAVSFFNQPYLADKIVLGQDIAVWGKWDKA 120 Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLPEWIE 190 K + + I D ++ VY + G+S K I A+ + L +L E + Sbjct: 121 KASLTGMK---ILAQVSDE----LQPVYHVAQGISQVNLVKAIKTAIDQGYLHLLEENLP 173 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 L ++ + EA +H P +++ A R+ ++EL Q+ L +++ + Sbjct: 174 SVLRERYRLMNRREAVFAMHFPTNLEEYR---QALRRMKFEELFYFQLQLQMLKANNRDI 230 Query: 251 I-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309 + G+ I + +R +PF T +Q A+ +IL DM M R+LQGDVGSGKT+V Sbjct: 231 LNGLKIAYDADRLAMQIRQLPFVLTDAQSGALAEILSDMKSYGHMNRLLQGDVGSGKTVV 290 Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369 A +AM AAV AG QA IM P ILA+QH+E +++ ++ + ++TG M A RR ALE Sbjct: 291 AGLAMFAAVTAGMQAAIMVPTEILAEQHFESLRQLF--PELSIALLTGGMKAAERRTALE 348 Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429 I+ GQ II+GTHAL Q+S+ Y+KL LV+ DEQHRFGV+QR +K P VL+MTAT Sbjct: 349 AISSGQVDIIVGTHALIQESVTYHKLGLVVTDEQHRFGVKQRRLFREKGDNPDVLMMTAT 408 Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489 PIPRTL +T+ GD+D+S I + PAGRKPI T + ++ V++ L+ L G + Y+I Sbjct: 409 PIPRTLAITAFGDMDVSIINQLPAGRKPIITRWVKHQQLPTVLDWLERELEVGAQVYFIS 468 Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIA 547 P IEE + + ++ V+ + L HF + + +HG+M + +K+++M +FK +L++ Sbjct: 469 PLIEESEALDLKNAVDLQSDLQAHFGEQVTVDLLHGKMKNDEKDAIMQAFKERKTNILVS 528 Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607 TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S +L+ +P +++ R Sbjct: 529 TTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGHKQSYAVLVANPK-TESGKER 587 Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 + ++ T DGF++AE DLK R GEI G +QSG+P+F +A Sbjct: 588 MKIMTETTDGFILAEADLKMRGSGEIFGTRQSGLPEFQVA 627 >gi|220929301|ref|YP_002506210.1| ATP-dependent DNA helicase RecG [Clostridium cellulolyticum H10] gi|219999629|gb|ACL76230.1| ATP-dependent DNA helicase RecG [Clostridium cellulolyticum H10] Length = 689 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 238/665 (35%), Positives = 378/665 (56%), Gaps = 22/665 (3%) Query: 17 RGVGK-KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75 +GVG+ + SLF IN DL+ Y+P + DR I+++ + G Sbjct: 18 KGVGELRESLFKKLGIN-------NIFDLITYYPRDYEDRSSIKNIADLQNGVPCSFEGT 70 Query: 76 ISQHSSFQLQKR--RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133 I + S ++ K+ + D TG+IT ++F + +KN G GK + Sbjct: 71 IVSNVSVTRPRKGLTLSKVSIEDSTGKITAIWFNQP--YVKNSLAIGENYIFFGKADRKL 128 Query: 134 NRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPEWIE 190 N++ +V+P + + +D+ L I VYS L + + ++ EA+ + L + I Sbjct: 129 NKLQIVNPVFEKSSLKDMKKSLKILPVYSSTKDLGQNTIRTVVNEAIKGIEDFELEDMIP 188 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 + + + A IH P A+D E AR RLA++EL Q+ LL K Sbjct: 189 DAVREIHNLADKTYAIKQIHFPASAQDMER---ARFRLAFEELFMLQLGLL-SYKSLATC 244 Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310 + I + ++++PF T +Q+ ++ +DM + M R++QGDVGSGKT++A Sbjct: 245 TRVGIKYTHIEMESFVKSLPFQLTNAQKKVFMEVEKDMESSHIMNRLVQGDVGSGKTVIA 304 Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370 ++A+ AV+ G Q +M P ILA+QHY+ I+ + I V++++ ++ + ++ +E Sbjct: 305 VLALFKAVKCGYQGALMVPTEILAEQHYKSIRSLFDSFGISVQLLSSSLTKKQKQLIVEE 364 Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430 + G+ ++IGTHAL +D IQ+ +L LVI DEQHRFGV+QR LT+K P VL+MTATP Sbjct: 365 LKEGKTDVVIGTHALIEDYIQFKQLGLVITDEQHRFGVRQRTILTEKGQNPDVLVMTATP 424 Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490 IPRTL L GD+DIS I E P GRKPIKT + + + + + ++ + EG++ Y +CP Sbjct: 425 IPRTLALILYGDLDISIIDELPPGRKPIKTYSVNESMRERINKFVRDKVKEGRQIYIVCP 484 Query: 491 QIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548 +EE +E +S V + + + S ++ IIHG+M +KE +M F +G +L++T Sbjct: 485 LVEESEEIEAKSAVVTADDISKSVFSDLNVGIIHGKMKSSEKEDIMKKFVSGEINILVST 544 Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608 T+IEVG++V +A+++IIENAE FGLAQLHQLRGRVGRG+E S CI L++ SK S R+ Sbjct: 545 TIIEVGVNVPNATLMIIENAERFGLAQLHQLRGRVGRGDEQSFCI-LFNQSNSKVSRERM 603 Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668 + + DGF+I+E+DL+ R GE G +Q G+P+ IA +L++A+ A I+ Sbjct: 604 KTMTQSTDGFVISEKDLEIRGPGEFFGTRQHGLPELKIANLYKDMDILKLAQNSAIEIIE 663 Query: 669 QDPDL 673 DP L Sbjct: 664 ADPGL 668 >gi|262282056|ref|ZP_06059825.1| ATP-dependent DNA helicase RecG [Streptococcus sp. 2_1_36FAA] gi|262262510|gb|EEY81207.1| ATP-dependent DNA helicase RecG [Streptococcus sp. 2_1_36FAA] Length = 671 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 243/664 (36%), Positives = 383/664 (57%), Gaps = 25/664 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PLS GVG K + +K+ ET DLL Y P + D + ++ ++ + Sbjct: 3 LHQPLSVLPGVGPKSAEKFAKL-----GIET-LQDLLLYFPFRYEDFQSK-QVLDLEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 I G ++ ++ Q + ++ + GE+ L + L + G I V GK Sbjct: 56 KAVIFGIVATPANVQYYGFKRNRLRFSIKQGEVILAVNFFNQPYLADKVEVGANIAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 K K + + + +D ++ VY + G+S K+I A + L +L Sbjct: 116 WDKAKASLTGMK---LLAQVKDD----LQPVYRVAQGISQTSLIKLIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL++ S AEA +H P KD A R+ ++EL Q+ L +++ + Sbjct: 169 ENLPQVLLERYQLLSRAEAVRAMHFP---KDLAEYKQALRRVKFEELFYFQMQLQVLKME 225 Query: 247 FKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 K G+ ++ + + Q+ +PF T +QE A+ +IL D+ M R+LQGDVGSG Sbjct: 226 TKDVSNGLVLDWQEEQLQEKKSQLPFPLTGAQERALAEILSDLKSPAHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM A AG Q+ +M P ILA+QH+E + + ++ ++TG+M A R+ Sbjct: 286 KTVVAGLAMYAVHTAGYQSALMVPTEILAEQHFESLSHLFPDLKLA--LLTGSMKAAERK 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + L I GQ ++IGTHAL QD +QY+ L LVIVDEQHRFGV QR L +K P VL+ Sbjct: 344 ETLLAIELGQVDMVIGTHALIQDGVQYHHLGLVIVDEQHRFGVAQRRILREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T + +++ V++ +K L +G + Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWIKKELVKGAQV 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y+I P IEE + + ++ ++ L +F + ++++HG+M +KE++M +FKN Sbjct: 464 YFISPLIEESEALDLKNAIDLEEELQAYFGVDARVSLLHGKMKSDEKEAIMQAFKNKEVD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+I++I +A+ FGL+QLHQLRGRVGRG++ S IL+ +P +++ Sbjct: 524 ILVSTTVIEVGVNVPNATIMVIMDADRFGLSQLHQLRGRVGRGDKQSYAILVANPK-TES 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T DGF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKKRMKIMTETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARKVA 642 Query: 664 KHIL 667 I+ Sbjct: 643 SQIV 646 >gi|225012820|ref|ZP_03703254.1| ATP-dependent DNA helicase RecG [Flavobacteria bacterium MS024-2A] gi|225003094|gb|EEG41070.1| ATP-dependent DNA helicase RecG [Flavobacteria bacterium MS024-2A] Length = 699 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 251/709 (35%), Positives = 397/709 (55%), Gaps = 28/709 (3%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI- 64 ++P+ ++ +GVG + + L + +N F DLL + P+ +IDR I E+ Sbjct: 1 MDPMQTEITYLKGVGPERARLLKEELNIKT-----FQDLLHFFPNRYIDRSRFHPIKELP 55 Query: 65 SEERIVTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRK 122 + V I G I+ S +Q++R +++ N D TG + L++F R + L+ ++ Sbjct: 56 TTNAEVQIKGIIT--SIDYIQQKRGKRMVANFQDETGSMQLVWF-RGYQWLRESIRINQQ 112 Query: 123 ITVTGKIKKLKNRIIMVHPHY----IFHNSQDVNF-PLIEAVYSL-PTGLSVDLFKKIIV 176 + G+I K + M HP +F F P+ + L G+S + +K++ Sbjct: 113 YVIFGRINWFKGQASMPHPELELESVFQQGVKAAFYPIYPSSEKLINKGVSQRVIQKLVA 172 Query: 177 EALS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235 L + E + + LL F S EA + +H P S A+ RL ++E Sbjct: 173 TLLQLKEAEFSETLPQYLLNHFKFISKKEALHQVHYPSTQN---LLSRAQMRLKFEEFFY 229 Query: 236 GQIALLLMRKQFKKEI-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNR 293 Q+ L+L +Q K++I G G + + N +PF+ T++Q+ +K+I D+ + Sbjct: 230 MQLQLILKNRQRKQKIKGYVFPEVGSVFKDFFDNHLPFTLTEAQKRVVKEIRNDLGTGRQ 289 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R+LQGDVGSGKT+VAL+AM A++ G Q+ ++AP ILAQQHY+ + + T + Sbjct: 290 MNRLLQGDVGSGKTIVALLAMLIAIDNGFQSTLVAPTEILAQQHYQSLDALLEGTGVQCA 349 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++TG+ + R E + G+ I++GTHA+F++ +Q+ L + I+DEQHRFGV QR K Sbjct: 350 LLTGSSTKKERVVLHEALESGELSILVGTHAVFEEKVQFQNLGIAIIDEQHRFGVAQRAK 409 Query: 414 LTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 L QK PHVL+MTATPIPRTL ++ GD+DIS I P GRKPIKT+ N V Sbjct: 410 LWQKNDIPPHVLVMTATPIPRTLAMSIYGDLDISIIDTLPPGRKPIKTLHRFDNNRLAVF 469 Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDID 529 +K ++ G++ Y + P I+E + +++ +++ + S+ F + I+I+HG+M D Sbjct: 470 AFVKEQINLGRQIYIVYPLIQESESLDYKDLMDGYESISRSFPPPKNQISIVHGKMKPED 529 Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589 K M+ F G ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRVGRG E Sbjct: 530 KAYEMERFVRGKTQIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVGRGSEQ 589 Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649 S C+L+ LS+ TRL + + DGF IAE DL+ R G ++G +QSG+ + IA Sbjct: 590 SYCVLMSGSKLSEEGKTRLQTMVKSNDGFEIAEVDLRLRGPGNLMGTQQSGVLQLKIADV 649 Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQSI-RILLYLYQYNEAFQFI 697 LL+ AR A+ I+ +D + Q I R L L + + FI Sbjct: 650 IKDTELLKAARDTAQQIIKKDAAFDNREHQVIKRTLSALKHDSNIWNFI 698 >gi|322392696|ref|ZP_08066156.1| DNA helicase RecG [Streptococcus peroris ATCC 700780] gi|321144688|gb|EFX40089.1| DNA helicase RecG [Streptococcus peroris ATCC 700780] Length = 671 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 239/663 (36%), Positives = 373/663 (56%), Gaps = 25/663 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GE+ + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGVSQTGLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL K ++A +H P KD A R+ ++EL Q+ L ++ + Sbjct: 169 ENLPQSLLDKYKLMPRSQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 K + G+ +N + + +PF T++QE+++ +IL DM + M R+LQGDVGSG Sbjct: 226 NKVQGSGLVLNWSQEKLTAVKEKLPFDLTQAQENSLHEILTDMKSDHHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV AG QA +M P ILA+QH+E ++ + ++ ++TG++ A +R Sbjct: 286 KTVVAGLAMYAAVTAGYQAALMVPTEILAEQHFESLESLFPDLKLA--LLTGSLKAAEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 LE IA G +IIGTHAL QD + Y KL L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 TVLETIAKGDVDVIIGTHALIQDGVDYAKLGLIIIDEQHRFGVGQRRILREKGENPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + P GRKPI T + ++ +V+ L+ + +G +A Sbjct: 404 MTATPIPRTLAITAFGDMDVSVIDQMPTGRKPIVTRWVKHEQLPQVLTWLEGEIQKGSQA 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + +A++HG+M +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAKVALLHGKMKSDEKDQIMQEFKERKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + + Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G KQSG+P+F +A +LE ARK A Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTKQSGLPEFHVADIIEDFPILEEARKVA 642 Query: 664 KHI 666 +I Sbjct: 643 SYI 645 >gi|138894706|ref|YP_001125159.1| ATP-dependent DNA helicase RecG [Geobacillus thermodenitrificans NG80-2] gi|134266219|gb|ABO66414.1| ATP-dependent DNA helicase RecG [Geobacillus thermodenitrificans NG80-2] Length = 678 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 240/675 (35%), Positives = 389/675 (57%), Gaps = 41/675 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 + P++ +G+G++ + L+ + T +LL Y P + D + + ++ + E Sbjct: 1 MLQPVTAVKGIGEETAAALADL------GITTVGELLNYAPYRY-DDYEQKDLAAVRHEE 53 Query: 69 IVTITGYISQHS----SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124 VT+ G + HS ++ +K+ L G IT++ F R LK +T Sbjct: 54 KVTVEGKV--HSAPLLTYYGKKKSRLSFRLLTGRYLITVVCFNRP--YLKGKITLNETVT 109 Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL------IEAVYSLPTGLSVDLFKKIIVEA 178 V GK + + I N+ ++ F IE VYS+ + L+V +++I A Sbjct: 110 VIGKWDRHRQTI----------NAYELRFGAAPEATGIEPVYSVRSPLTVKTMRRLIKAA 159 Query: 179 LSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237 ++ + +P+ + L + EA +H PR ++ AR RL Y+E L Q Sbjct: 160 FAQFGMHIPDLLPPALRRAYRLIDKQEAVRALHFPRSREELHQ---ARRRLVYEEFLLYQ 216 Query: 238 IALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 + + +RK + E GI + + L +PFS T +Q I++IL DM +M R Sbjct: 217 LKMQALRKVMRDERRGIIHSFPEEQLASFLSGLPFSLTNAQRRVIREILDDMRAPRQMNR 276 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 +LQGDVGSGKT+VA +A+ AAV +G Q +M P ILA+QH + + +T + VE++T Sbjct: 277 LLQGDVGSGKTVVAAVALYAAVLSGFQGALMVPTEILAEQHVRSLAELFADTGVTVELLT 336 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 ++ R++ L ++ G I+IGTHAL Q+ +Q+ +L LVI DEQHRFGV+QR L + Sbjct: 337 SSVKGKRRKELLAKLEDGTVDIVIGTHALIQEGVQFRQLGLVITDEQHRFGVEQRRVLRE 396 Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 K AP VL+MTATPIPRTL +T+ GD+D+S + E PAGRK ++T + N+ V++ ++ Sbjct: 397 KGHAPDVLMMTATPIPRTLAITAFGDMDVSVLDEMPAGRKKVETYWVKHNQFARVLDFIE 456 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVM 534 L G +AY ICP IEE ++ + ++ ++ + L ++ + ++HGR+S +KE+VM Sbjct: 457 KELRRGHQAYVICPLIEESEKLDVQNAIDVHSQLVYYYRGKYEVGLMHGRLSADEKEAVM 516 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 +F +L++TTV+EVG++V +A++++I +AE FGLAQLHQLRGRVGRG+ S CIL Sbjct: 517 RAFSENRIHVLVSTTVVEVGVNVPNATVMVIYDAERFGLAQLHQLRGRVGRGDAQSYCIL 576 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD- 653 + P S+ R+ ++ T DGF++AE+DL+ R G+ G KQSG+P+F P +HD Sbjct: 577 IADPK-SEIGKERMHIMTETTDGFVLAEKDLELRGPGDFFGTKQSGLPEFQFGDP-VHDY 634 Query: 654 SLLEIARKDAKHILT 668 +LE+AR+DA +++ Sbjct: 635 RILEVARRDAAKLVS 649 >gi|257887985|ref|ZP_05667638.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,141,733] gi|257824039|gb|EEV50971.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,141,733] Length = 678 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 234/665 (35%), Positives = 380/665 (57%), Gaps = 27/665 (4%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 + L P++ GVG+K + L+ + DLL Y+P + D R ++EI Sbjct: 1 MRSLDDPITMLAGVGEKRAASLASL------GIQTIEDLLTYYPFRYEDIQER-NLNEIQ 53 Query: 66 EERIVTITGYISQ---HSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 ++ VT+ G + + F +K R ++++ ++ FF + LK Sbjct: 54 DQEKVTLKGIVVSPPVMNRFGYKKSRLQFRMMQEHDVFNVS--FFNQP--YLKEKVILSE 109 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 +I V GK R + + + D P+ S+ VDL KK E + Sbjct: 110 EIAVYGKWDA--KRKALNGMKILGSQTMDDFSPIYHVNKSIRQTTLVDLIKKGFQEYGT- 166 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 ++ E + K+L++K A A +H P K+ E A+ R+ ++E Q+ L Sbjct: 167 --LIEENLPKNLVEKYRLLDRASAVRSMHFP---KNHEENHQAKRRVVFEEFFLFQMRLQ 221 Query: 242 LMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 ++K K E G+ I + + ++ + +PF T +Q+ +I +D+ M R+LQG Sbjct: 222 GLKKAEKAETNGLEILYDVQKLKEFTQKLPFELTNAQKRVTNEICRDLRSPQHMQRLLQG 281 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA IA+ A V AG Q +M P ILAQQH E +++ ++ V ++TG+ Sbjct: 282 DVGSGKTVVAAIALYATVTAGFQGALMVPTEILAQQHMESLQQLFDPNEVTVALLTGSTK 341 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 RR+ LE++ G+ +++IGTHAL QD +++ L LVI DEQHRFGV QR L +K Sbjct: 342 TKERRELLEKLERGEINVVIGTHALIQDGVEFQNLGLVITDEQHRFGVNQRKVLREKGWR 401 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 P VL MTATPIPRTL +T+ G++D+S I E PAGR PI+T + ++D V++ + L+ Sbjct: 402 PDVLFMTATPIPRTLAITAYGEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTRKELA 461 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFK 538 G + Y ICP IEE + + ++ VE + L E F + ++HG+M + +KE +M++FK Sbjct: 462 RGHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAFK 521 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 + ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P Sbjct: 522 DNQMQILVSTTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVANP 581 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 ++ R+ ++ T +GF+++E+DL+ R GE+ G +QSG+P+F IA ++LE+ Sbjct: 582 K-NELGVERMKIMTETTNGFVLSEKDLELRGPGEVFGFRQSGLPQFAIADLVTDGNVLEV 640 Query: 659 ARKDA 663 AR++A Sbjct: 641 AREEA 645 >gi|312863296|ref|ZP_07723534.1| ATP-dependent DNA helicase RecG [Streptococcus vestibularis F0396] gi|311100832|gb|EFQ59037.1| ATP-dependent DNA helicase RecG [Streptococcus vestibularis F0396] Length = 676 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 242/678 (35%), Positives = 387/678 (57%), Gaps = 44/678 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEISEE 67 L +P++ +G G K + +K+ + DLL Y P + D ++ K I E+ + Sbjct: 8 LDSPIADLKGFGPKSAEKFTKL------DLHTVGDLLLYFPFRYED--FKSKSIFELMDG 59 Query: 68 RIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYR-----KTEMLKNVFFEG 120 ITG + ++ Q KR + G I + FF + K EM G Sbjct: 60 EKAVITGTVVTPANVQYYGFKRNRLSFKIKQGEAVIAISFFNQPYLVDKIEM-------G 112 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 ++ + GK + K+ + + + +D P VY + G+S K I A Sbjct: 113 AEVAIFGKWDQKKSAVTGMK---VLAQVEDDMQP----VYHVTQGVSQAQLIKAIKAAFD 165 Query: 181 R--LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L +L E + + L+ K EA + +H P KD A R ++EL Q+ Sbjct: 166 SGALNLLEESLPQVLMDKYRLMGRQEAVHAMHFP---KDLAEYKQALRRTKFEELFYFQM 222 Query: 239 ALLLMRKQFKKEI-GIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 L +++ + K E G+ I E KI KI +PF T++Q+ ++ +IL DM M R Sbjct: 223 NLQVLKAENKSETNGLAIAYDEAKIKAKIAE-LPFPLTEAQQLSLSEILADMKSGAHMNR 281 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 +LQGDVGSGKT++A +AM A AG Q+ +M P ILA+QHY+ ++ + + +++ ++T Sbjct: 282 LLQGDVGSGKTVIASLAMYGAYTAGLQSALMVPTEILAEQHYQSLQGFFPDLEVV--LLT 339 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 M A ++ AL +I G+A +I+GTH+L QD++ Y++L LVI DEQHRFGV QR + Sbjct: 340 SGMKAADKKVALSKIESGEAQMIVGTHSLIQDTVTYHRLGLVITDEQHRFGVNQRRIFRE 399 Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 K P VL+MTATPIPRTL +T+ G++D+S I + PAGRKPI T + ++D V+ +K Sbjct: 400 KGDNPDVLMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKPIITRWVKHEQLDTVLAWIK 459 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVM 534 L + + Y+I P IEE + + ++ V L + F ++++A++HGRM + +K+ +M Sbjct: 460 GELEKDAQVYFISPLIEESEALDLKNAVALHQELTDFFGDSATVALMHGRMKNDEKDQIM 519 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 FK+ ++L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG++ S C+L Sbjct: 520 QDFKDKKSQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGDKQSYCVL 579 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 + +P + R+ + T DGF++AEEDLK R GEI G +QSG+P+F +A + Sbjct: 580 VANPK-NDTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYN 638 Query: 655 LLEIARKDAKHILTQDPD 672 +LE AR+ A I++ DP+ Sbjct: 639 ILEEARRVASQIVS-DPN 655 >gi|196247674|ref|ZP_03146376.1| ATP-dependent DNA helicase RecG [Geobacillus sp. G11MC16] gi|196212458|gb|EDY07215.1| ATP-dependent DNA helicase RecG [Geobacillus sp. G11MC16] Length = 682 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 240/675 (35%), Positives = 389/675 (57%), Gaps = 41/675 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 + P++ +G+G++ + L+ + T +LL Y P + D + + ++ + E Sbjct: 5 MLQPVTAVKGIGEETAAALADL------GITTVGELLNYAPYRY-DDYEQKDLAAVRHEE 57 Query: 69 IVTITGYISQHS----SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124 VT+ G + HS ++ +K+ L G IT++ F R LK +T Sbjct: 58 KVTVEGKV--HSAPLLTYYGKKKSRLSFRLLTGRYLITVVCFNRP--YLKGKITLNETVT 113 Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL------IEAVYSLPTGLSVDLFKKIIVEA 178 V GK + + I N+ ++ F IE VYS+ + L+V +++I A Sbjct: 114 VIGKWDRHRQTI----------NAYELRFGAAPEATGIEPVYSVRSPLTVKTMRRLIKAA 163 Query: 179 LSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237 ++ + +P+ + L + EA +H PR ++ AR RL Y+E L Q Sbjct: 164 FAQFGMHIPDLLPPALRRAYRLIDKQEAVRALHFPRSREELHQ---ARRRLVYEEFLLYQ 220 Query: 238 IALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 + + +RK + E GI + + L +PFS T +Q I++IL DM +M R Sbjct: 221 LKMQALRKVMRDERRGIIHSFPEEQLASFLSGLPFSLTNAQRRVIREILDDMRAPRQMNR 280 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 +LQGDVGSGKT+VA +A+ AAV +G Q +M P ILA+QH + + +T + VE++T Sbjct: 281 LLQGDVGSGKTVVAAVALYAAVLSGFQGALMVPTEILAEQHVRSLAELFADTGVTVELLT 340 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 ++ R++ L ++ G I+IGTHAL Q+ +Q+ +L LVI DEQHRFGV+QR L + Sbjct: 341 SSVKGKRRKELLAKLEDGTVDIVIGTHALIQEGVQFRQLGLVITDEQHRFGVEQRRVLRE 400 Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 K AP VL+MTATPIPRTL +T+ GD+D+S + E PAGRK ++T + N+ V++ ++ Sbjct: 401 KGHAPDVLMMTATPIPRTLAITAFGDMDVSVLDEMPAGRKKVETYWVKHNQFARVLDFIE 460 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVM 534 L G +AY ICP IEE ++ + ++ ++ + L ++ + ++HGR+S +KE+VM Sbjct: 461 KELRRGHQAYVICPLIEESEKLDVQNAIDVHSQLVYYYRGKYEVGLMHGRLSADEKEAVM 520 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 +F +L++TTV+EVG++V +A++++I +AE FGLAQLHQLRGRVGRG+ S CIL Sbjct: 521 RAFSENRIHVLVSTTVVEVGVNVPNATVMVIYDAERFGLAQLHQLRGRVGRGDAQSYCIL 580 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD- 653 + P S+ R+ ++ T DGF++AE+DL+ R G+ G KQSG+P+F P +HD Sbjct: 581 IADPK-SEIGKERMHIMTETTDGFVLAEKDLELRGPGDFFGTKQSGLPEFQFGDP-VHDY 638 Query: 654 SLLEIARKDAKHILT 668 +LE+AR+DA +++ Sbjct: 639 RILEVARRDAAKLVS 653 >gi|222153644|ref|YP_002562821.1| ATP-dependent DNA helicase [Streptococcus uberis 0140J] gi|222114457|emb|CAR43286.1| ATP-dependent DNA helicase [Streptococcus uberis 0140J] Length = 671 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 234/668 (35%), Positives = 376/668 (56%), Gaps = 27/668 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEISEE 67 L +P+S +G+G K + K+ DLL Y+P + D ++ K + ++ + Sbjct: 3 LQSPISELKGLGPKSAEKFQKL------GIFTIEDLLLYYPFRYED--FKSKSVFDLQDG 54 Query: 68 RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 +TG + ++ Q + ++ GE+ + + L + ++I V G Sbjct: 55 EKAVVTGMVVTPATVQYYGFKRNRLSFKVKQGELVIAVNFFNQPYLADKVTLNQEIAVFG 114 Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVL 185 K + K + + + ++ VY + G+S K I A L + Sbjct: 115 KWDQKKASLTGMKLLITVEDD-------LQPVYHVAQGISQSSLLKAIKSAFDTGLLETI 167 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 PE I + LLQ A +H P +D++ A R+ ++EL Q+ L ++++ Sbjct: 168 PENIPQQLLQNYRLMPRQAAIKAMHFPNDLRDYK---QALRRIKFEELFYFQMNLQVLKQ 224 Query: 246 QFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 K E G+ + + + ++++PF T +Q +++DIL+DMS M R+LQGDVGS Sbjct: 225 ANKAETAGLKMAYSKDLLSEKIKSLPFPLTNAQNRSLQDILKDMSSGQHMNRLLQGDVGS 284 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKT++A +AM AA AG Q+ +M P ILA+QHY +++ ++ + I+ M A + Sbjct: 285 GKTVIASLAMYAAYTAGYQSALMVPTEILAEQHYTSLQELF--PELSIAILKSGMKVAEK 342 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424 R AL IA G +I+GTHAL QD++QY++L LVI DEQHRFGV+QR +K P VL Sbjct: 343 RAALSAIAEGNVDMIVGTHALIQDAVQYHQLGLVITDEQHRFGVKQRRIFREKGENPDVL 402 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 +MTATPIPRTL +T+ G++D+S I E PAGRKPI T + ++D V+ + + +G + Sbjct: 403 MMTATPIPRTLAITAYGEMDVSIIDELPAGRKPILTRWVKHQQLDTVLYWMTQEIEKGAQ 462 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTC 542 Y I P IEE + + ++ V L +F + IA++HG+M + +K+++M +FK G Sbjct: 463 VYVISPLIEESEALDLKNAVALEQELKAYFKEKARIALMHGKMKNEEKDTIMQTFKKGQI 522 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 +L++TTVIEVG++V +A+I++I +A+ FGL+QLHQLRGRVGRG + S IL+ +P ++ Sbjct: 523 DILVSTTVIEVGVNVPNATIMLIMDADRFGLSQLHQLRGRVGRGHKQSYAILVANPK-TE 581 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662 R+ ++ NT DGF++AE DLK R GEI G +QSG+P+F A +LE AR+ Sbjct: 582 TGKERMKIMTNTNDGFILAEADLKMRGSGEIFGTRQSGIPEFKTADLVEDYPILEEARRV 641 Query: 663 AKHILTQD 670 A I Q+ Sbjct: 642 ATLITGQE 649 >gi|124268921|ref|YP_001022925.1| ATP-dependent DNA helicase RecG [Methylibium petroleiphilum PM1] gi|124261696|gb|ABM96690.1| putative ATP-dependent DNA helicase [Methylibium petroleiphilum PM1] Length = 665 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 234/646 (36%), Positives = 357/646 (55%), Gaps = 22/646 (3%) Query: 40 RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99 R IDL + P + D I+ E V + G + + S +L+ RR + L D + Sbjct: 8 RDIDLALHLPLRYEDETRVTPIAAAHEGETVQVEGRV-RDSRVELRPRRQLIVRLADDSD 66 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159 E+ L F + K + G ++ V G+++ MVHP + N + V Sbjct: 67 ELVLRFLHFYPSHQKTLAV-GARLRVRGELRGGFLGREMVHPSFKAVNDDTPLATALTPV 125 Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS----FPSIAEAFNIIHNPRK- 214 Y L +K + AL+R P+ +LL S PS+ +A +H+P Sbjct: 126 YPASAQLPQAYLRKAVSSALTRAPL------DELLPPGSVPAGLPSLKQALLFLHHPAPE 179 Query: 215 ---AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIP 270 A + + PA +RL +DELLA Q++ L +++ P+ G + +++L +P Sbjct: 180 VMLATLEDHSHPAWQRLKFDELLAQQLSQLQAQRERAALRAPPLRAGAGGLHEQLLAALP 239 Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T +Q ++I +D+++ + R+LQGDVGSGKT+VA +A A++AG Q +MAP Sbjct: 240 FRLTGAQHRVTEEIARDLARPHPTHRLLQGDVGSGKTVVAALAATVAIDAGWQCALMAPT 299 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 ILA+QH+ + + + + + +TG+ R + LER+A G+A +++GTHA+ QD + Sbjct: 300 EILAEQHFRKLVGWLEPLGVPIAWLTGSQKGKARTRMLERVASGEARLVVGTHAVIQDRV 359 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDIS 446 + +L L ++DEQHRFGV QRL+L +K PH+L+M+ATPIPRTL +T D+D+S Sbjct: 360 VFERLGLAVIDEQHRFGVAQRLQLKRKLEGTPLEPHLLMMSATPIPRTLAMTYYADLDVS 419 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 + E P GR PI T + R D VI R++ +++G++ YW+CP IEE + + ++ E Sbjct: 420 TLDELPPGRTPIVTKVFADGRRDSVIARIRDEVAKGRQVYWVCPLIEESETLDLQNATET 479 Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 L E + ++HGRM +K +VM F G +L++TTVIEVG+DV +AS+++I Sbjct: 480 HARLGEALPGVQVGLLHGRMPAAEKAAVMARFTGGELAVLVSTTVIEVGVDVPNASLMVI 539 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625 E+AE FGL+QLHQLRGRVGRG S C+LLY PPLS RL + T DGF IA DL Sbjct: 540 EHAERFGLSQLHQLRGRVGRGSVASVCVLLYTPPLSDTGKARLRAMAETNDGFEIARRDL 599 Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671 R GE +G +QSG A +LL AR+ A +L P Sbjct: 600 DIRGPGEFMGARQSGAALLRFADLAEDSALLAQARQLAPQLLEHHP 645 >gi|322386106|ref|ZP_08059743.1| DNA helicase RecG [Streptococcus cristatus ATCC 51100] gi|321269875|gb|EFX52798.1| DNA helicase RecG [Streptococcus cristatus ATCC 51100] Length = 671 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 226/633 (35%), Positives = 369/633 (58%), Gaps = 23/633 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLL Y P + D + + ++ + I+G ++ ++ Q + ++ GE+ Sbjct: 31 DLLLYFPFRYEDFKSK-NVLDLEDGEKAVISGIVATPANVQYYGYKRNRLRFTIKQGEVA 89 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162 + + L + G + + GK K K + + + +D ++ VY + Sbjct: 90 IAVNFFNQPYLADKIELGATVAIFGKWDKTKASLTGMK---VLAQVEDD----LQPVYRV 142 Query: 163 PTGLS----VDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 G+S V L K + L RL L E + LL++ +A +H PR ++ Sbjct: 143 AQGISQASLVKLIKVAFDQGLDRL--LEENLPPVLLERYQLLERTQAVRAMHFPRDLAEY 200 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQ 277 + A R+ ++EL Q+ L +++ + K G+ I + K+ + +PFS T++Q Sbjct: 201 K---QALRRVKFEELFYFQMQLQVLKHETKDVSQGLAIPWQEKMLAQKKDALPFSLTEAQ 257 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 E ++++IL D+ M R+LQGDVGSGKT+VA +AM AA AG Q+ +M P ILA+QH Sbjct: 258 ERSLEEILSDLQSPAHMNRLLQGDVGSGKTVVAGLAMYAAYTAGYQSALMVPTEILAEQH 317 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 + + + ++ + ++TG M A RR+ L I GQ +++GTHAL Q+ + Y++L L Sbjct: 318 LDSLAQLF--PELNLALLTGGMKAAERRETLAAIESGQVDMVVGTHALIQEGVVYHRLGL 375 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI+DEQHRFGV QR L +K P VL+MTATPIPRTL +T+ GD+D+S I + PAGRKP Sbjct: 376 VIIDEQHRFGVDQRRILREKGNNPDVLMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKP 435 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-- 515 I T + +++ V++ +K L++G + Y+I P IEE + + ++ + L +F Sbjct: 436 IITRWVKHEQLEVVLDWMKKELAKGAQVYFISPLIEESEALDLKNAIALEEELKAYFANQ 495 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A++HGRM + +KE++M FK+G +L++TTVIEVG++V +A+I++I +A+ FGL+Q Sbjct: 496 AQVALLHGRMKNDEKEAIMQDFKDGKTDILVSTTVIEVGVNVPNATIMVIMDADRFGLSQ 555 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG + S +L+ +P +++ R+ ++ T DGF++AEEDLK R GEI G Sbjct: 556 LHQLRGRVGRGNKQSYAVLVANPK-TESGKKRMKIMTETTDGFVLAEEDLKMRGSGEIFG 614 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668 +QSG+P+F +A +LE ARK A I+ Sbjct: 615 TRQSGIPEFQVADIVEDYPILEEARKVASQIVA 647 >gi|169350086|ref|ZP_02867024.1| hypothetical protein CLOSPI_00828 [Clostridium spiroforme DSM 1552] gi|169293299|gb|EDS75432.1| hypothetical protein CLOSPI_00828 [Clostridium spiroforme DSM 1552] Length = 670 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 204/529 (38%), Positives = 317/529 (59%), Gaps = 24/529 (4%) Query: 156 IEAVYSLPTGLSVDLFKKIIVEALS--------RLPVLPEWIEKDLLQKKSFPSIAEAFN 207 I VYSL GL+ F+ + +AL+ +P+ I+ L+ K+ A N Sbjct: 132 ITPVYSLKDGLTQKSFQNYVKKALAFYQDHIQDEVPI-AYMIKHHLIHKEL------ALN 184 Query: 208 IIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267 +IH P +D + A L Y+E L Q+ + ++ KK +GI + +I K + Sbjct: 185 LIHFPNSNRDIQ---EAMRYLKYEEFLKFQLTMQYIKLSRKKNLGIKKQFDQQIINKFIN 241 Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 +PF+ T Q+ A+ +IL+D+ M R +QGDVGSGKT+V I + A AG Q +M Sbjct: 242 ELPFALTTDQKQAVNEILEDLKSDTTMYRFVQGDVGSGKTVVGAIGLYANYLAGFQGALM 301 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 AP ILA QH+ ++K ++T I + ++TG++ ++ +++ G+ +I+IGTHALFQ Sbjct: 302 APTEILATQHFTLLQKLFKDTNINLTLLTGHLSNKEKQIIYQQLNDGKINIVIGTHALFQ 361 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + + YYKL LVI DEQHRFGV QR L +K ++M+ATPIPRTL ++ GD+D+S Sbjct: 362 EKVNYYKLGLVITDEQHRFGVNQRKALKEKGQQVDFMIMSATPIPRTLAISLYGDMDVST 421 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 I P GRKPI + ++ + + ++ +LK L+ G + Y +CP +EE + + ++ + Sbjct: 422 IKTMPKGRKPIISDVVRSHSMKPILNKLKTYLASGGQCYVVCPLVEESEAIDSKAATSIY 481 Query: 508 NSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + +F+ + ++HG+M D K +MD FK+ ++L++TTVIEVG+DV +A+ ++I Sbjct: 482 AGMKSYFSGHYEVGLLHGKMDDETKNKIMDDFKDNQIQILVSTTVIEVGVDVENANWMVI 541 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625 NAE FGL+QLHQLRGRVGRG++ C LL + SK + RL LKN DGF ++ DL Sbjct: 542 YNAERFGLSQLHQLRGRVGRGDKQGYCFLLTNSK-SKEALERLEFLKNCYDGFEVSFYDL 600 Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL---TQDP 671 K R G+ILG +QSG+P F+I ++LE++RKDA +L + DP Sbjct: 601 KLRGPGDILGDQQSGLPNFMIGDVFKDVNILEVSRKDALELLKSESNDP 649 >gi|302871974|ref|YP_003840610.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor obsidiansis OB47] gi|302574833|gb|ADL42624.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor obsidiansis OB47] Length = 679 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 230/613 (37%), Positives = 361/613 (58%), Gaps = 19/613 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS-QHSSFQLQKRRPYKILLNDGTGEI 101 DLL++ P ++D KI E+ I + ++ + + + + KI + D TG + Sbjct: 32 DLLWHIPRKYLDYSKLKKIRELCNGEIESFVAKVAGKPVEIETKSVKIIKIPVEDSTGVV 91 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161 T ++F + + +KNV EG +GKI++ I + +P + ++ ++ I VY+ Sbjct: 92 TTVWFNQ--DYIKNVLKEGEIFCFSGKIERKGFYIEVKNPEFEKYDQHLLHTGRIVPVYN 149 Query: 162 LPTGLSVDLFKKIIVEALSR-----LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216 GLS + + I+ L + + ++P +I QK + I A IH P Sbjct: 150 STEGLSQKVIRNIVNNLLQQVDGALIDIIPPYIR----QKYNLSEINFAIKNIHFPENKL 205 Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276 E AR+RL ++E Q++LLL+++ +K G+ I ++ + +PF T++ Sbjct: 206 SLEL---ARKRLVFEEFYLLQLSLLLLKENIEKNEGLKIENAQSSLKEFEKLLPFELTEA 262 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q+ + +I QD+ +M R++QGDVG GKT+VAL + A ++AG Q +MAP +LA Q Sbjct: 263 QKRVLAEIAQDLESTKQMNRLIQGDVGCGKTVVALASAYATIKAGYQVALMAPTEVLALQ 322 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 HY KKY N + V ++ G+ P+ + L+ I HG ++IGTHAL QD +++ L Sbjct: 323 HYNECKKYFGN-KFNVRLLIGSTPKKEKEIILKEIEHGLCKMVIGTHALIQDEVKFKNLG 381 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 L I DEQHRFGV QR++LT+K ++P++L+MTATPIPRTL L GD+DIS I + P GRK Sbjct: 382 LAITDEQHRFGVIQRVELTKKGSSPNILVMTATPIPRTLSLVLYGDLDISIIDQLPPGRK 441 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-- 514 I T + + V +K L EG++ YWICP IEE + N +S VE SL E F Sbjct: 442 KILTYAVDESFRQRVYNFIKKQLDEGRQVYWICPLIEESETLNAKSAVEFAKSLKEGFFK 501 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 +I +HG++S +++ +++ FK+G +L++TTV+EVGI+V +A++++IENAE FGLA Sbjct: 502 DYNIGCLHGKLSVKERDKILNDFKDGYIHILVSTTVVEVGINVPNATVMVIENAERFGLA 561 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRGE S CI L++ S+ + R+ + +++GF IAE DLK R G++ Sbjct: 562 QLHQLRGRVGRGEHQSYCI-LFNQSDSEIAKKRMIAITRSQNGFEIAEMDLKLRGPGDLF 620 Query: 635 GIKQSGMPKFLIA 647 G KQ G+ F +A Sbjct: 621 GTKQHGVMNFKVA 633 >gi|21911087|ref|NP_665355.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS315] gi|28895227|ref|NP_801577.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes SSI-1] gi|21905297|gb|AAM80158.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes MGAS315] gi|28810473|dbj|BAC63410.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes SSI-1] Length = 671 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 246/671 (36%), Positives = 378/671 (56%), Gaps = 30/671 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L AP+S +G G K + K+ + DLL Y+P + D + + E+ Sbjct: 3 LTAPMSNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEK 56 Query: 69 IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 V ITG + ++ Q KR L G + + FF + L + G+++ V Sbjct: 57 AV-ITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQP--YLADKIELGQEVAVF 113 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA--LSRLPV 184 GK K+ I + + +D P VY + G+S K I A ++ Sbjct: 114 GKWDATKSAITGMK---VLAQVEDDMQP----VYRVAQGISQSTLIKAIKSAFEINAHLE 166 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 L E + LL+K ++A +H P KD A R+ ++EL Q+ L +++ Sbjct: 167 LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVLK 223 Query: 245 KQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 + + E G+PI + + ++PF T +Q+ ++ DIL DMS M R+LQGDVG Sbjct: 224 AENRSETNGLPILYSKHAMETKISSLPFILTNAQKRSLDDILSDMSSGAHMNRLLQGDVG 283 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT++A ++M AA AG Q+ +M P ILA+QHY +++ + I I+T M A Sbjct: 284 SGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELFPDLSI--AILTSGMKAAV 341 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 +R L IA+G +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR +K P V Sbjct: 342 KRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPDV 401 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL +T+ G++D+S I E PAGRKPI T + ++ V+E +K L + Sbjct: 402 LMMTATPIPRTLAITAFGEMDVSVIDELPAGRKPIMTRWVKHEQLGTVLEWVKGELQKDA 461 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGT 541 + Y I P IEE + + ++ V L +F + +A++HGRM + +K+++M FK+ Sbjct: 462 QVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDKK 521 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S +L+ +P + Sbjct: 522 SHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGHKQSYAVLVANPK-T 580 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 + R++++ T DGF++AE DLK R GEI G +QSG+P+F +A +LE ARK Sbjct: 581 DSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640 Query: 662 DAKHILTQDPD 672 + I++ DP+ Sbjct: 641 VSAAIVS-DPN 650 >gi|94991096|ref|YP_599196.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS10270] gi|94544604|gb|ABF34652.1| ATP-dependent DNA helicase recG [Streptococcus pyogenes MGAS10270] Length = 671 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 247/672 (36%), Positives = 379/672 (56%), Gaps = 32/672 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L AP+S +G G K + K+ + DLL Y+P + D + + E+ Sbjct: 3 LTAPMSNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEK 56 Query: 69 IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 V ITG + ++ Q KR L G + + FF + L + G+++ V Sbjct: 57 AV-ITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQP--YLADKIELGQEVAVF 113 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL---SRLP 183 GK K+ I + + +D I+ VY + G+S K I A + L Sbjct: 114 GKWDATKSAITGMK---VLAQVEDD----IQPVYRVAQGISQSTLIKAIKSAFEIDAHLE 166 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 L E + LL+K ++A +H P KD A R+ ++EL Q+ L ++ Sbjct: 167 -LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVL 222 Query: 244 RKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 + + + E G+PI + + ++PF T +Q+ ++ DIL DMS M R+LQGDV Sbjct: 223 KAENRSETNGLPILYSKHAMETKISSLPFILTNAQKRSLDDILSDMSSGAHMNRLLQGDV 282 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKT++A ++M AA AG Q+ +M P ILA+QHY +++ + I I+T M A Sbjct: 283 GSGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELFPDLSI--AILTSGMKAA 340 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 +R L IA+G +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR +K P Sbjct: 341 VKRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPD 400 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 VL+MTATPIPRTL +T+ G++D+S I E PAGRKPI T + ++ V+E +K L + Sbjct: 401 VLVMTATPIPRTLAITAFGEMDVSVIDELPAGRKPIMTRWVKHEQLGTVLEWVKGELQKD 460 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNG 540 + Y I P IEE + + ++ V L +F + +A++HGRM + +K+++M FK+ Sbjct: 461 AQVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDK 520 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S +L+ +P Sbjct: 521 KSHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGHKQSYAVLVANPK- 579 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + + R++++ T DGF++AE DLK R GEI G +QSG+P+F +A +LE AR Sbjct: 580 TDSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFKVADIVEDYPILEEAR 639 Query: 661 KDAKHILTQDPD 672 K + I++ DP+ Sbjct: 640 KVSAAIVS-DPN 650 >gi|299142557|ref|ZP_07035688.1| ATP-dependent DNA helicase RecG [Prevotella oris C735] gi|298575992|gb|EFI47867.1| ATP-dependent DNA helicase RecG [Prevotella oris C735] Length = 700 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 244/674 (36%), Positives = 379/674 (56%), Gaps = 35/674 (5%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG K LSK +N + DLL Y+P ++DR I E++ V I G I Sbjct: 14 GVGPKRKEILSKELNVQT-----WRDLLEYYPYKYVDRSKVYAIDELNGTMPFVQIKGKI 68 Query: 77 SQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 F R+ + DG G + L++F R + + + + V GK R Sbjct: 69 LSFEEFSNGARKKRIVAHFTDGHGVVDLVWF-RGAQYIYKTYALNTEYIVFGKPTIYGGR 127 Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLP-----TGLSVDLFKKIIVEALSRLP--VLPEW 188 HP +N ++ YS G++ +K+ +SRLP + E Sbjct: 128 YQFAHPEIEKAADLQLNEMGMQPYYSTTEKMKNNGMTSRAIEKLTKTLISRLPEGSISET 187 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248 + +L+ F S AF+ IH P+ + + A+ RL ++EL Q+ +L + Sbjct: 188 LPPFILRPHHFISREAAFHGIHYPKSLDELQ---RAQVRLKFEELFYVQLNILRYASDHR 244 Query: 249 KEIGIPINVEGKIAQKILRN--------IPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 ++ G + Q + +N + F T +Q+ + +I DM+ +M R+LQG Sbjct: 245 RK------YRGYVFQHVGQNFNGFYHNNLTFELTGAQKRVMHEIRNDMASGKQMNRLLQG 298 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKTLVAL+ M A++ G QA IMAP ILA+QHY IK++ + + VE++TG + Sbjct: 299 DVGSGKTLVALMTMLIAIDNGFQACIMAPTEILAEQHYATIKEFLKGIDVRVELLTGIVK 358 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-T 419 R++ LE +A G I++GTHA+ +D++Q+ +L L +VDEQHRFGV QR +L K+ T Sbjct: 359 GKRRKQVLEALAVGDVKILVGTHAVIEDTVQFARLGLAVVDEQHRFGVAQRARLWAKSET 418 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 PHVL+MTATPIPRTL +T GD+D+S I E P GRKPI+T+ N++ + ++ + Sbjct: 419 PPHVLVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTIHKFDNQMTSLYNGIRQQI 478 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538 +G++ Y + P I+E ++++ + + + + SL E F I+ +HG+M +KE M F Sbjct: 479 RQGRQVYIVFPLIKENEKNDLKDLEKGYESLLEIFPEFRISKVHGKMKPAEKEEEMRRFV 538 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 +G ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+ Sbjct: 539 SGETQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGAKQSYCILVTSY 598 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLE 657 LS+ + R+ ++ +T DGF IAE DLK R G++ G +QSG+ L IA L++ Sbjct: 599 KLSEETRKRIDIMCDTNDGFRIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLVQ 658 Query: 658 IARKDAKHILTQDP 671 +AR +AK I+ DP Sbjct: 659 LARDEAKKIIDNDP 672 >gi|307709631|ref|ZP_07646083.1| ATP-dependent DNA helicase RecG [Streptococcus mitis SK564] gi|307619529|gb|EFN98653.1| ATP-dependent DNA helicase RecG [Streptococcus mitis SK564] Length = 671 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 241/674 (35%), Positives = 382/674 (56%), Gaps = 30/674 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL GVG K + K G N DLL Y P + D + ++ E+ + Sbjct: 3 LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + +S Q + ++ + GEI + L + G + V GK Sbjct: 56 KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEIVFAVNFFNQPYLADKIELGATLAVFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186 + K + + + +D ++ VY L G+S K+I A + L +L Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL K S +A +H P KD A R+ ++EL Q+ L ++ + Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKYE 225 Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ ++ + + ++PF+ T++QE ++++IL DM M R+LQGDVGSG Sbjct: 226 NRVQGSGLVLDWSQEKVSAVKESLPFALTQAQEKSLQEILTDMKSDRHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM AAV A QA +M P ILA+QH+E +K + ++ ++TG++ A +R Sbjct: 286 KTVVAGLAMFAAVTAVYQAALMVPTEILAEQHFESLKGLFPDLKLA--LLTGSLKVAEKR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + LE IA G+A +IIGTHAL QD + Y +L L+I+DEQHRFGV QR L +K P VL+ Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T I ++ +V+ L+ + +G +A Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L HF + +A++HG+M +K+ +M FK Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQEFKERKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + + Sbjct: 524 ILVSTTVIEVGVNVPNATVMLIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642 Query: 664 KHILT-----QDPD 672 +I + +DP+ Sbjct: 643 SYISSIEGWQEDPE 656 >gi|290579830|ref|YP_003484222.1| putative ATP-dependent DNA helicase [Streptococcus mutans NN2025] gi|254996729|dbj|BAH87330.1| putative ATP-dependent DNA helicase [Streptococcus mutans NN2025] Length = 671 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 245/636 (38%), Positives = 368/636 (57%), Gaps = 29/636 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL----QKRRPYKILLNDGT 98 DLL Y+P + D + + + E+ V +TG + ++ Q + R +KI ++ Sbjct: 31 DLLLYYPFRYEDFKAKSVLDLLDGEKAV-VTGKVVTPANVQYYGFKRNRLSFKIKQDEAV 89 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 I + FF + L++ + I + GK + K+ + + I D P Sbjct: 90 --IAVSFFNQP--YLQDKVELDQDIAIFGKWDQKKSALTGMK---ILAQVTDDMQP---- 138 Query: 159 VYSLPTGLSVDLFKKIIVEALSR--LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216 VY + G+S K I A L L E + + LL K A +H P K Sbjct: 139 VYHVAQGISQSALIKAIQSAFEAGYLRFLSENLPQVLLNKYRLLDRQTATRAMHFP---K 195 Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVE-GKIAQKILRNIPFSPT 274 D E A R+ ++EL Q+ L +++ K E G+ I + ++A KI +PF+ T Sbjct: 196 DLEEYKQALRRIKFEELFYFQLNLQVLKANNKSESNGLLITYDHDQVAAKI-AALPFALT 254 Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334 +Q+ ++ +IL DM M R+LQGDVGSGKT++A +AM AA AG Q+ +M P ILA Sbjct: 255 NAQKRSLDEILADMKSGAHMNRLLQGDVGSGKTVIASLAMYAAYSAGLQSALMVPTEILA 314 Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394 +QHYE ++ T ++ + ++T M A RR AL IA G +I+GTHAL Q+ + Y+K Sbjct: 315 EQHYESLR--TLFPELSIALLTSGMKAAVRRSALAAIADGSVDMIVGTHALIQEGVDYHK 372 Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454 L LVI DEQHRFGV+QR +K P VL+MTATPIPRTL +T+ G++D+S I E PA Sbjct: 373 LGLVITDEQHRFGVKQRRLFREKGENPDVLMMTATPIPRTLAITAFGEMDVSLIDELPAS 432 Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 RKPI T + ++D+V+ +K L + ++ Y I P IEE + + ++ V L +F Sbjct: 433 RKPIVTRWVKHEQLDKVLPWVKEQLKKKEQVYVISPLIEESETLDLKNAVALEEDLKAYF 492 Query: 515 TSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 SS IA++HGRM + +KE++M +FK G+ +L++TTVIEVG++V +A+I+II +A+ FG Sbjct: 493 ASSANIALMHGRMKNDEKEAIMQAFKKGSIDILVSTTVIEVGVNVPNATIMIIMDADRFG 552 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 L+QLHQLRGRVGRGE+ S IL+ +P + R+ ++ T DGF++AEEDLK R GE Sbjct: 553 LSQLHQLRGRVGRGEKQSYTILVANPK-TDTGKNRMRIMTKTTDGFVLAEEDLKMRGSGE 611 Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668 I G++QSG+P+F +A +LE ARK A I+ Sbjct: 612 IFGVRQSGIPEFQVADIVEDYPILEEARKVASQIVA 647 >gi|19746733|ref|NP_607869.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS8232] gi|94994975|ref|YP_603073.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS10750] gi|19748960|gb|AAL98368.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes MGAS8232] gi|94548483|gb|ABF38529.1| ATP-dependent DNA helicase recG [Streptococcus pyogenes MGAS10750] Length = 671 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 247/672 (36%), Positives = 378/672 (56%), Gaps = 32/672 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L AP+S +G G K + K+ + DLL Y+P + D + + E+ Sbjct: 3 LTAPMSNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEK 56 Query: 69 IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 V ITG + ++ Q KR L G + + FF + L + G+++ V Sbjct: 57 AV-ITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQP--YLADKIELGQEVAVF 113 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL---SRLP 183 GK K+ I + + +D P VY + G+S K I A + L Sbjct: 114 GKWDATKSAITGMK---VLAQVEDDMQP----VYRVAQGISQSTLIKAIKSAFEIDAHLE 166 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 L E + LL+K ++A +H P KD A R+ ++EL Q+ L ++ Sbjct: 167 -LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVL 222 Query: 244 RKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 + + + E G+PI + + ++PF T +Q+ ++ DIL DMS M R+LQGDV Sbjct: 223 KAENRSETNGLPILYSKHAMETKISSLPFILTNAQKRSLDDILSDMSSGAHMNRLLQGDV 282 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKT++A ++M AA AG Q+ +M P ILA+QHY +++ + I I+T M A Sbjct: 283 GSGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELFPDLSI--AILTSGMKAA 340 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 +R L IA+G +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR +K P Sbjct: 341 VKRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPD 400 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 VL+MTATPIPRTL +T+ G++D+S I E PAGRKPI T + ++ V+E +K L + Sbjct: 401 VLMMTATPIPRTLAITAFGEMDVSVIDELPAGRKPIMTRWVKHEQLGTVLEWVKGELQKD 460 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNG 540 + Y I P IEE + + ++ V L +F + +A++HGRM + +K+++M FK+ Sbjct: 461 AQVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDK 520 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S +L+ +P Sbjct: 521 KSHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGHKQSYAVLVANPK- 579 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + + R++++ T DGF++AE DLK R GEI G +QSG+P+F +A +LE AR Sbjct: 580 TDSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEAR 639 Query: 661 KDAKHILTQDPD 672 K + I++ DP+ Sbjct: 640 KVSAAIVS-DPN 650 >gi|229086408|ref|ZP_04218584.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock3-44] gi|228696924|gb|EEL49733.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock3-44] Length = 685 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 236/664 (35%), Positives = 383/664 (57%), Gaps = 35/664 (5%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G++ S L ++ ++ LL Y P + D + ++E+ E VT Sbjct: 11 PVTDVKGIGEETSELLHEMGIYTVSH------LLEYFPYRYED-YAMKDLAEVKHEERVT 63 Query: 72 ITGYISQHSSFQLQ------KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 + G + HS+ LQ R ++L++ IT++ F R K +T+ Sbjct: 64 VEGKV--HSAPLLQYYGKKKSRLTVRVLVDRYL--ITVVCFNRP--YYKQKLKLDETVTI 117 Query: 126 TGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP- 183 TGK + + I + H+ QDV E VYS+ L+V ++ I +AL+ Sbjct: 118 TGKWDQHRQTIAVSELHFGPVARQQDV-----EPVYSVKGKLTVKQMRRFIAQALNEYGN 172 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 + E + LL + EA +H P +D + AR R Y+E Q+ + + Sbjct: 173 AITEVLPDGLLSRYKLLPRYEALRALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQTL 229 Query: 244 RK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 RK + + G ++ + ++ +PF T +Q + +I++DM RM R+LQGDV Sbjct: 230 RKMERENSKGTKKDISMRELEEFTDALPFPLTSAQRRVVSEIMKDMQSPYRMNRLLQGDV 289 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKT+VA IA+ AA A Q +M P ILA+QHY+ + + + + VE++T ++ A Sbjct: 290 GSGKTVVAAIALYAAKLAHYQGALMVPTEILAEQHYQSLVETFSHFNMNVELLTSSVKGA 349 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 RR+ L ++ G+ I++GTHAL QD + +++L LVI DEQHRFGV QR L +K +P Sbjct: 350 RRREVLAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPD 409 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T + ++ V+ ++ + +G Sbjct: 410 VLFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLERVLGFVEKEVKKG 469 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNG 540 ++AY ICP IEE ++ + ++ ++ + L H+ S + ++HGR+S +KE VM+ F Sbjct: 470 RQAYVICPLIEESEKLDVQNAIDLHSMLMHHYQGKSQVGLMHGRLSSQEKEDVMEQFSEN 529 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+ P Sbjct: 530 KVQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK- 588 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIA 659 S+ R+ ++ T DGF+++E+DL+ R G+ G KQSG+P+F +A +HD LE A Sbjct: 589 SETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETA 647 Query: 660 RKDA 663 R+DA Sbjct: 648 RQDA 651 >gi|114775351|ref|ZP_01450919.1| ATP-dependent DNA helicase RecG [Mariprofundus ferrooxydans PV-1] gi|114553462|gb|EAU55843.1| ATP-dependent DNA helicase RecG [Mariprofundus ferrooxydans PV-1] Length = 671 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 229/640 (35%), Positives = 353/640 (55%), Gaps = 24/640 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRPKISEISEERIV 70 PLST +GVG L + + R + DLL + P +ID I+++ + Sbjct: 9 PLSTVKGVGPALEKRLHQ-------RDIRTLGDLLLHLPKDYIDDRQLSPIAQLCDGVSA 61 Query: 71 TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 I G I + K+R ILL D +G I L FF+ M EGR+I V G + Sbjct: 62 RIQGRILTKEARGYGKKRQVIILLADDSGRIRLNFFHSGYMMSDARLSEGREIAVRGVAE 121 Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190 + + + M HP + + P + VY GLS +I +AL+ LPV Sbjct: 122 RWQGQWQMTHPEWCVSEAFQ---PGYQPVYRALAGLSGKRIATLIRQALTLLPVAASSPL 178 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 +L + P + +A +H P D E + A RL +EL+ + L LMR++ ++ Sbjct: 179 DAVLAATASP-LRQALRELHQPHDL-DSEALNRAAVRLKCEELI---LYLQLMREKKRQA 233 Query: 251 IGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309 ++++ + + +++ +++PF T +Q SA DI D++ RM R+LQGDVG+GKT V Sbjct: 234 DCPAVSLQAETSSRLMHQSLPFELTDAQASAWSDISTDLNSGKRMHRLLQGDVGAGKTWV 293 Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369 A +AM A G QA ++AP +LA+QH E ++ ++++TG+ RR+ L Sbjct: 294 AALAMIKAAGCGYQAALLAPTEVLAKQHAETLQALFAPLGFTIKLLTGSTRAKERRELLA 353 Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----TAPHVLL 425 + G+ +I+GTHAL + + + L L +VDEQHRFGV+QR L K A H+L Sbjct: 354 ELGSGELKLIVGTHALLSEDVVFNHLALALVDEQHRFGVRQRWGLADKKRDGHQAVHLLG 413 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL L GD+D+S + P GRKP++T +I +++ +I ++ +L + Sbjct: 414 MTATPIPRTLALALYGDMDLSIMRGMPPGRKPVETRVIASDKMKSLIAGMQRILDAEGRI 473 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544 YWI P+I+E ++ SV +R L +F +++ +HGRM DK +++F G CK+ Sbjct: 474 YWIVPRIDEDEDG--LSVDQRVELLKRYFPDANVLGLHGRMKSGDKNGALEAFTTGVCKM 531 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 L++TTV+EVG++V +A +I+IE AE +GLAQLHQLRGRVGR E C+L+ S+ S Sbjct: 532 LVSTTVVEVGVNVPEARLIVIEEAESYGLAQLHQLRGRVGRSSEQGYCMLIAGDAASEGS 591 Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644 TRL+ + NT DG +AE DL R G+ +G +Q G F Sbjct: 592 RTRLNQMVNTHDGLELAEADLALRGSGDAVGTRQHGDAGF 631 >gi|313637341|gb|EFS02825.1| ATP-dependent DNA helicase RecG [Listeria seeligeri FSL S4-171] Length = 682 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 236/681 (34%), Positives = 386/681 (56%), Gaps = 25/681 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P + +G+G++ + L ++ + DLL+ P + D R +S ++ E +T Sbjct: 8 PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSLVAHEERIT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 I G + ++ R+ K+ T G++ + F+ + LK+ G +T++GK Sbjct: 61 IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKINVGETVTISGKWD 119 Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEW 188 K + +I N ++ +E VY L L +K A + E Sbjct: 120 KGRAQITASKVKIGAVENEEE-----LEGVYRLKGTLRNKTMQKYTRAAFDAYSSSIEEV 174 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247 I +LL+K EA ++H P+ + + AR R+ Y+E L Q+ + RK + Sbjct: 175 IPANLLEKYQLMDRLEAVRVLHFPKNNDELK---QARRRMVYEEFLLFQLKMQFFRKIER 231 Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 +K GI IN + + + + ++PF+ TK+Q+ + +I DM M R+LQGDVGSGKT Sbjct: 232 EKSGGISINYDVEDLRHYIDSLPFALTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 291 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +VA IAM AA ++G Q+ +M P ILA+QH + + Q + V ++T ++ RR+ Sbjct: 292 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDVTVGLLTSSVKGKRRREL 351 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 L + +G ++IGTHAL QD + Y++L LVI DEQHRFGV QR L +K P VL MT Sbjct: 352 LAMLENGSVDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVTQRRVLREKGEYPDVLFMT 411 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T+ G++D+S I E PAGRK I+T + ++ VI ++ + +G + Y Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLERVIGFMEKEIDKGHQVYI 471 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545 ICP IEE ++ + ++ ++ FN L + + ++HG++ DKE +M F + L Sbjct: 472 ICPLIEESEKLDVQNAIDVFNILQNKWGTKYRPGLMHGKLLPADKEQIMRDFNDKKIDCL 531 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ P ++ Sbjct: 532 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVXX 590 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAK 664 R+ ++ T DGF+++E DL+ R G+ G KQSG+P+F +A +HD +LEIAR+DA Sbjct: 591 XRMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQDAV 649 Query: 665 HILTQDPDLTSVRGQSIRILL 685 H++ ++ L + + + + LL Sbjct: 650 HMIFEENMLENKQYEKLVALL 670 >gi|281423396|ref|ZP_06254309.1| ATP-dependent DNA helicase RecG [Prevotella oris F0302] gi|281402732|gb|EFB33563.1| ATP-dependent DNA helicase RecG [Prevotella oris F0302] Length = 700 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 243/674 (36%), Positives = 379/674 (56%), Gaps = 35/674 (5%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG K LSK +N + DLL Y+P ++DR I E++ V I G I Sbjct: 14 GVGPKRKEILSKELNVQT-----WRDLLEYYPYKYVDRSKVYAIDELNGTMPFVQIKGKI 68 Query: 77 SQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 F R+ + DG G + L++F R + + + + V GK R Sbjct: 69 LSFEEFSNGARKKRIVAHFTDGHGVVDLVWF-RGAQYIYKTYTLNTEYIVFGKPTIYGGR 127 Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLP-----TGLSVDLFKKIIVEALSRLP--VLPEW 188 HP +N ++ YS G++ +K+ +SRLP + E Sbjct: 128 YQFAHPEIEKAADLQLNEMGMQPYYSTTEKMKNNGMTSRAIEKLTKTLISRLPEGSISET 187 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248 + +L+ F S AF+ IH P+ + + A+ RL ++EL Q+ +L + Sbjct: 188 LPPFILRPHHFISREAAFHGIHYPKSLDELQ---RAQVRLKFEELFYVQLNILRYASDHR 244 Query: 249 KEIGIPINVEGKIAQKILRN--------IPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 ++ G + Q + +N + F T +Q+ + +I DM+ +M R+LQG Sbjct: 245 RK------YRGYVFQHVGQNFNDFYHNNLTFELTGAQKRVMHEIRNDMASGKQMNRLLQG 298 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKTLVAL+ M A++ G QA IMAP ILA+QHY IK++ + + VE++TG + Sbjct: 299 DVGSGKTLVALMTMLIAIDNGFQACIMAPTEILAEQHYATIKEFLKGIDVRVELLTGIVK 358 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-T 419 R++ LE +A G I++GTHA+ +D++Q+ +L L +VDEQHRFGV QR +L K+ T Sbjct: 359 GKRRKQVLEALAVGDVKILVGTHAVIEDTVQFARLGLAVVDEQHRFGVAQRARLWAKSET 418 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 PH+L+MTATPIPRTL +T GD+D+S I E P GRKPI+T+ N++ + ++ + Sbjct: 419 PPHILVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTIHKFDNQMTSLYNGIRQQI 478 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538 +G++ Y + P I+E ++++ + + + + SL E F I+ +HG+M +KE M F Sbjct: 479 RQGRQVYIVFPLIKENEKNDLKDLEKGYESLLEIFPEFRISKVHGKMKPAEKEEEMRRFV 538 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 +G ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+ Sbjct: 539 SGETQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGAKQSYCILVTGY 598 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLE 657 LS+ + R+ ++ +T DGF IAE DLK R G++ G +QSG+ L IA L++ Sbjct: 599 KLSEETRKRIDIMCDTNDGFRIAEADLKLRGPGDLEGTQQSGIAFNLKIADIARDGQLVQ 658 Query: 658 IARKDAKHILTQDP 671 +AR +AK I+ DP Sbjct: 659 LARDEAKKIIDNDP 672 >gi|326201982|ref|ZP_08191852.1| ATP-dependent DNA helicase RecG [Clostridium papyrosolvens DSM 2782] gi|325987777|gb|EGD48603.1| ATP-dependent DNA helicase RecG [Clostridium papyrosolvens DSM 2782] Length = 690 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 228/641 (35%), Positives = 369/641 (57%), Gaps = 15/641 (2%) Query: 41 FIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR--RPYKILLNDGT 98 D+L Y+P + DR I+++ + G I + S KR ++ + D T Sbjct: 36 LFDVLTYYPREYEDRSSIKNIADLQNGVPCSFEGTIVSNVSITRPKRGMTVSRVSIEDST 95 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IE 157 G+IT ++F + +KN G GK ++ N++ +V+P + +S+D+ L I Sbjct: 96 GKITAIWFNQP--YVKNSLKLGDNYIFFGKAERKLNKLQIVNPVFEKASSKDMKKSLKIL 153 Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215 VYS L ++ + ++ EA+ + L + I + K P + IH P Sbjct: 154 PVYSSTKDLGQNIIRSVVYEAIKIINDIELEDMIPLSVRDKFKLPDRTYSIKQIHFPASV 213 Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPT 274 +D E AR RL ++EL Q+ LL + +GI ++ + +++ PF T Sbjct: 214 RDIE---SARFRLVFEELFMLQLGLLSYKSLATDTRVGIKYTHIDQM-EDFIKSFPFELT 269 Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334 +Q+ ++ +DM M R++QGDVGSGKT++A++A+ AV+ G Q +M P ILA Sbjct: 270 NAQKKVFVEVEKDMESSRVMNRLVQGDVGSGKTMIAVLALFKAVKCGYQGALMVPTEILA 329 Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394 +QH++ IK + VE+++ ++ + ++ +E + G+ ++IGTHAL +D +++ + Sbjct: 330 EQHFKSIKSLFDCFGVSVELLSSSLTKKQKQLIVEELKEGKTDVVIGTHALIEDYVEFKQ 389 Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454 L LVI DEQHRFGV+QR LT+K P VL+MTATPIPRTL L GD+DIS I E P G Sbjct: 390 LGLVITDEQHRFGVRQRTILTEKGQNPDVLVMTATPIPRTLALILYGDLDISIIDELPPG 449 Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 RKPIKT + + + ++ ++EG++ Y +CP +EE +E +S V + + Sbjct: 450 RKPIKTYSVNEAMRERINNFVREKVNEGRQVYIVCPLVEESEEIEAKSAVVTAEDISKSV 509 Query: 515 TS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 ++ IIHG+M +KE++M SF +G +L++TT+IEVG++V +A+++IIENAE FG Sbjct: 510 FRDLNVGIIHGKMKSSEKEAIMKSFVSGEISILVSTTIIEVGVNVPNATVMIIENAERFG 569 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 LAQLHQLRGRVGRG+E S CI L++ SK + R+ ++ ++ DGF+I+E+DL+ R GE Sbjct: 570 LAQLHQLRGRVGRGDEQSFCI-LFNQSNSKVAKERMKIMTHSNDGFVISEKDLEIRGPGE 628 Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 G +Q G+P+ IA +L+ A++ A I+ DP L Sbjct: 629 FFGTRQHGLPELKIANLYKDMEILKQAQESAMEIIQADPGL 669 >gi|71904171|ref|YP_280974.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS6180] gi|71803266|gb|AAX72619.1| ATP-dependent DNA helicase [Streptococcus pyogenes MGAS6180] Length = 671 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 247/672 (36%), Positives = 378/672 (56%), Gaps = 32/672 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L AP+S +G G K + K+ + DLL Y+P + D + + E+ Sbjct: 3 LTAPMSNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEK 56 Query: 69 IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 V ITG + ++ Q KR L G + + FF + L + G+++ V Sbjct: 57 AV-ITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQP--YLADKIELGQEVAVF 113 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL---SRLP 183 GK K+ I + + +D P VY + G+S K I A + L Sbjct: 114 GKWDATKSAITGMK---VLAQVEDDMQP----VYRVAQGISQSTLIKAIKSAFEIDAHLE 166 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 L E + LL+K ++A +H P KD A R+ ++EL Q+ L ++ Sbjct: 167 -LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVL 222 Query: 244 RKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 + + + E G+PI + + ++PF T +Q+ ++ DIL DMS M R+LQGDV Sbjct: 223 KAENRSETNGLPILYSKHAMETKISSLPFILTNAQKRSLDDILSDMSSGAHMNRLLQGDV 282 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKT++A ++M AA AG Q+ +M P ILA+QHY +++ + I I+T M A Sbjct: 283 GSGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELFPDLSI--AILTSGMKAA 340 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 +R L IA+G +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR +K P Sbjct: 341 VKRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPD 400 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 VL+MTATPIPRTL +T+ G++D+S I E PAGRKPI T + ++ V+E +K L + Sbjct: 401 VLMMTATPIPRTLAITAFGEMDVSIIDELPAGRKPIMTRWVKHEQLGTVLEWVKGELQKD 460 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNG 540 + Y I P IEE + + ++ V L +F + +A++HGRM + +K+++M FK+ Sbjct: 461 AQVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDK 520 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S +L+ +P Sbjct: 521 KSHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGYKQSYAVLVANPK- 579 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + + R++++ T DGF++AE DLK R GEI G +QSG+P+F +A +LE AR Sbjct: 580 TDSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEAR 639 Query: 661 KDAKHILTQDPD 672 K + I++ DP+ Sbjct: 640 KVSAAIVS-DPN 650 >gi|320160931|ref|YP_004174155.1| ATP-dependent DNA helicase RecG [Anaerolinea thermophila UNI-1] gi|319994784|dbj|BAJ63555.1| ATP-dependent DNA helicase RecG [Anaerolinea thermophila UNI-1] Length = 816 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 237/688 (34%), Positives = 389/688 (56%), Gaps = 37/688 (5%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64 L L PL GVGKK + L K+ IN DLL++ P + D I+++ Sbjct: 124 LRTLQTPLHRVSGVGKKTAEALEKLGINT-------LQDLLYFFPRRYDDYSRLKPINKL 176 Query: 65 SEERIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122 VT+ G + +S Q++ K + + ++ DGTG + L +F + + N F +G + Sbjct: 177 KYGDEVTVLGVVQAIASRQVRDGKLQLIEAIITDGTGTLRLSWFNKLWYV--NRFPKGTQ 234 Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182 + V+GK+ ++IM P + + ++ I VY L L+ ++++ + + Sbjct: 235 VAVSGKLDMYLGKLIMKDPEIEEIDREQLHTSRIVPVYPLTADLNQKSLRRLMYRTIMQW 294 Query: 183 -PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 P + +++ + + A + H P ++D AR RLA+DE+ Q+ +L Sbjct: 295 APKVSDFLPASVRSSLKLLELGVALSQAHFP-DSQDV--LDQARWRLAFDEIFLLQLGVL 351 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 + +K +V ++ L +P+ T +Q+ A+++I D+ M R+LQGD Sbjct: 352 RQKHSWKSLQARVFDVPDTWLEQKLAQLPYELTNAQKRAVQEIRADLVSGKPMDRLLQGD 411 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK-YTQNTQII--------V 352 VGSGKT+VA +A+ G Q +MAP ILA+QHY + + TQ+ + + Sbjct: 412 VGSGKTIVAALAIGMVTYHGAQVAVMAPTSILAEQHYRNLSRVLTQSDESTLPILQPEQI 471 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 ++T ++ A R K L + HG ++IGTHAL +D +Q+ L LV++DEQHRFGV QR Sbjct: 472 RLLTSDVRGAEREKILNDLQHGSVKLLIGTHALIEDPVQFQDLQLVVIDEQHRFGVAQRA 531 Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT-VIIPINRIDEV 471 L QK PH+L+MTATPIPR+L LT GD+D++ + E P GR+P++T V+ P+ R + Sbjct: 532 ALRQKGNNPHLLVMTATPIPRSLALTIYGDLDLTVMDEMPPGRQPVETHVLHPLER-ERA 590 Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDID 529 + ++ +S+G +AY I P +E+ + SVV+ + L + I ++HG++ + Sbjct: 591 YQLIRHEISKGHQAYIIYPMVEQNENGEHLSVVQEYTRLQQEIFPEFRIGMMHGKLKPEE 650 Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589 K+ VM F++G +L++T+VIEVG+DV +A++++IE A FGLAQLHQ RGRVGRG E Sbjct: 651 KDEVMAGFRDGKYHILVSTSVIEVGVDVPNATVMLIEGANRFGLAQLHQFRGRVGRGSEK 710 Query: 590 SSCILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 S C+L+ P S ++ RLSV+ T DGF++AE+DL+QR GE LG +Q+G + +A Sbjct: 711 SYCLLI---PESDDALENERLSVMVETNDGFVLAEKDLQQRGPGEFLGTRQAGFSELKMA 767 Query: 648 Q-PELHDSLLEIARKDAKHILTQDPDLT 674 ++H ++E AR+ A+ I QDP+L+ Sbjct: 768 NLTDVH--IIEKARQQAQLIFQQDPELS 793 >gi|289547971|ref|YP_003472959.1| ATP-dependent DNA helicase RecG [Thermocrinis albus DSM 14484] gi|289181588|gb|ADC88832.1| ATP-dependent DNA helicase RecG [Thermocrinis albus DSM 14484] Length = 783 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 230/619 (37%), Positives = 350/619 (56%), Gaps = 28/619 (4%) Query: 89 PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS 148 P +++ DGTG + L F Y K +K F ++ V G++K+ + MVHP + Sbjct: 164 PLRVVCTDGTGYLVLRFRY-KDPRVKLRFKPSTQLIVYGRVKEFQGEKYMVHPEILSEEE 222 Query: 149 QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL----PEWIEKDLLQKKSFPSIAE 204 P LS K + +A+ + L PE+I +++LQK +F I E Sbjct: 223 AGSILPFYNIRTKNEQSLSAKTRHKRVRKAMFHITELAKHMPEYIPREILQKYNFLEIGE 282 Query: 205 AFNIIHNPRKAKDFEWTS---PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK- 260 +F + H P + S P + RL YDEL Q+AL L R + + + P EGK Sbjct: 283 SFYLTHRPPTGDEETLNSFLAPFQRRLVYDELFIFQLALQLRRSEIRSQKA-PTLKEGKE 341 Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320 ++ + ++PF T +Q+ I++IL D+ ++ M R+LQGDVGSGKT+VA+ A + Sbjct: 342 WVEQFVSSLPFELTGAQKRVIQEILTDVEKEVPMSRLLQGDVGSGKTVVAMAISYAFAKE 401 Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380 G Q +M P ILA+QHYE +K+ + + V ++T ++ R A G HI+I Sbjct: 402 GYQTAVMVPTEILARQHYENFRKFLEPMGVRVGLLTSSVKGRERLSVKYHTARGHLHILI 461 Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPRTLVLT 438 GTHAL Q+ +++ +L V+VDEQHRFGV QR L QK PH L+M+ATPIPRTL L+ Sbjct: 462 GTHALLQEEVEFNRLGFVVVDEQHRFGVLQRKILLQKGRGFYPHCLVMSATPIPRTLALS 521 Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498 GD+D+S + + PAGRKP+ T I+ +R +E++E ++ L G + Y I P IEE + Sbjct: 522 LYGDLDVSFLDQMPAGRKPVITTIVFESRTEEMLEVIRRELQAGHRVYVIYPLIEESERL 581 Query: 499 NFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557 + ++ + F ++ ++HG+M D +K ++M+ F+ +L++T+V+EVG+DV Sbjct: 582 SLKAATTEYERWKNLFPERNVLLLHGKMKDSEKIAIMEEFRE-KGDILVSTSVVEVGVDV 640 Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL------YHPPLSKNSYTRLSVL 611 A++++IE+A FGL+QLHQLRGRVGR S C L+ Y P + RL VL Sbjct: 641 PTATVMVIESAHRFGLSQLHQLRGRVGRSNLTSYCFLVVPDQERYSPAMR-----RLKVL 695 Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ--PELHDSLLEIARKDAKHILTQ 669 +T DGF IAEED+ R GE+LG QSG F +A E LLE+AR+DA ++ + Sbjct: 696 VSTYDGFKIAEEDMLMRGPGELLGESQSGFFGFRVANFMREQDRRLLELAREDASELIKK 755 Query: 670 DPDLTSVRGQSIRILLYLY 688 DP L + +++LY Y Sbjct: 756 DPFLLN-HADLRKMVLYRY 773 >gi|260584631|ref|ZP_05852377.1| ATP-dependent DNA helicase RecG [Granulicatella elegans ATCC 700633] gi|260157654|gb|EEW92724.1| ATP-dependent DNA helicase RecG [Granulicatella elegans ATCC 700633] Length = 683 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 225/641 (35%), Positives = 365/641 (56%), Gaps = 25/641 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLL + P + D R +S I ++ VT+ G I + +I GE Sbjct: 33 DLLTHFPFRYEDLQVR-DVSTIMDQEKVTLAGIIVTEPVVHYYGFKKNRISCRMAIGEQV 91 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV----NFPLIEA 158 + + LKN + ++ + GK ++ ++ + I +D+ NF EA Sbjct: 92 IQVSFFNQPYLKNKLIQHQECIIFGKWDAKRSTLMGMK---IISTKEDMEETSNF---EA 145 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPV----LPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 VY + K+I AL P+ +P + + +K+ S EA +H P Sbjct: 146 VYRTNKSIRQSTLLKLIQTAL---PLYKENIPNPLPASIQRKRQLLSHPEAVEGMHFP-- 200 Query: 215 AKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 KD + +R++L Y EL Q+ L L +K+ + G I E + ++ +PF+ Sbjct: 201 -KDEHHSKQSRQQLVYQELFCYQLKLQSLKKKRHHSQKGQSILYENVALKAFIQTLPFTL 259 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T+ Q+ + +I D+ M R+LQGDVGSGKT+VA IAM A G QA +M P +L Sbjct: 260 TEGQKKVVNEICYDLRAPYEMSRLLQGDVGSGKTVVATIAMVATALTGKQACLMVPTELL 319 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A QHYE I T+ T+I V +TG RR+ LE++ G+ +++GTHALFQ+ + Y+ Sbjct: 320 ADQHYETICALTKETEIKVGKLTGTTTLKERRQLLEQLEKGELQLLVGTHALFQEDVIYH 379 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L +++DEQHRFGV+QR +L QK T +VL MTATPIPRTL +T+ G++D S + E P Sbjct: 380 DLAFIVIDEQHRFGVKQRAQLAQKGTGVNVLQMTATPIPRTLAITTFGEMDTSILKEVPK 439 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 GR+PI+T + +++V + ++ + G++AY I P IEE + + ++ E + + + Sbjct: 440 GRQPIQTFWVKEQELEKVYDYIEKQVQTGRQAYVISPLIEESENLDVQNATEIYEMISKR 499 Query: 514 FTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 F + S+ ++HGR+ +KESVM +F+ ++L++TTVIEVG+DV +A++++I +A+ F Sbjct: 500 FENRLSVGLLHGRLKSDEKESVMTAFQKNDVQVLVSTTVIEVGVDVPNATVMVILDADRF 559 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631 GLAQLHQLRGRVGRGE S+CIL+ P ++ R+ ++ + DGF ++++DL+ R G Sbjct: 560 GLAQLHQLRGRVGRGEHASTCILIASPK-TEQGKQRMQIMCESTDGFYLSQKDLELRGSG 618 Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 ++ G++QSG+P+F +A +LE AR+DA + ++ D Sbjct: 619 DVFGLRQSGIPEFKVADIVQDYDILEQAREDAITFVIEEED 659 >gi|255029718|ref|ZP_05301669.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes LO28] Length = 648 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 236/660 (35%), Positives = 380/660 (57%), Gaps = 27/660 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P + +G+G++ + L ++ + DLL+ P + D R +SE++ E +T Sbjct: 8 PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 I G + ++ R+ K+ T G++ + F+ + LK+ G +T++GK Sbjct: 61 IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKISVGETVTISGKWD 119 Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSRLPVLPE 187 K + ++ S++ +E VY L L ++ + ++ ++ S+ + E Sbjct: 120 KSRAQVTASKIKIGAVESEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQ--DIEE 173 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-Q 246 I +LL+K EA I+H P K+ E AR R+ Y+E L Q+ + RK + Sbjct: 174 VIPGNLLEKYQLMDRLEAVRILHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKIE 230 Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 +K GI IN + + + + ++PF TK+Q+ + +I DM M R+LQGDVGSGK Sbjct: 231 REKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGK 290 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366 T+VA IAM AA ++G Q+ +M P ILA+QH + + Q I V ++T ++ RR+ Sbjct: 291 TVVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRRE 350 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426 L + +G ++IGTHAL QD + Y++L LVI DEQHRFGV QR L +K P VL M Sbjct: 351 LLAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFM 410 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486 TATPIPRTL +T+ G++D+S I E PAGRK I+T + +D VI ++ + +G + Y Sbjct: 411 TATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVY 470 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKL 544 ICP IEE ++ + ++ ++ FN L + + ++HG++ DKE +M F + Sbjct: 471 IICPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNDKKIDC 530 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 L++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ P ++ Sbjct: 531 LVSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGVDQSYCILIADPK-TEVG 589 Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDA 663 R+ ++ T DGF+++E DL+ R G+ G KQSG+P+F +A +HD +LEIAR+DA Sbjct: 590 KERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQDA 648 >gi|313632773|gb|EFR99739.1| ATP-dependent DNA helicase RecG [Listeria seeligeri FSL N1-067] Length = 682 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 236/681 (34%), Positives = 386/681 (56%), Gaps = 25/681 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P + +G+G++ + L ++ + DLL+ P + D R +S ++ E +T Sbjct: 8 PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSLVAHEERIT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 I G + ++ R+ K+ T G++ + F+ + LK+ G +T++GK Sbjct: 61 IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKINVGETVTISGKWD 119 Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEW 188 K + +I N ++ +E VY L L +K A + E Sbjct: 120 KGRAQITASKVKIGAVENEEE-----LEGVYRLKGTLRNKTMQKYTRAAFDAYSSSIEEV 174 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247 I +LL+K EA ++H P+ + + AR R+ Y+E L Q+ + RK + Sbjct: 175 IPANLLEKYQLMDRLEAVRVLHFPKNNDELK---QARRRMVYEEFLLFQLKMQFFRKIER 231 Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 +K GI IN + + + + ++PF+ TK+Q+ + +I DM M R+LQGDVGSGKT Sbjct: 232 EKSGGISINYDVEDLRHYIDSLPFALTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 291 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +VA IAM AA ++G Q+ +M P ILA+QH + + Q + V ++T ++ RR+ Sbjct: 292 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDVTVGLLTSSVKGKRRREL 351 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 L + +G ++IGTHAL QD + Y++L LVI DEQHRFGV QR L +K P VL MT Sbjct: 352 LAMLENGSVDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMT 411 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T+ G++D+S I E PAGRK I+T + ++ VI ++ + +G + Y Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLERVIGFMEKEIDKGHQVYI 471 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545 ICP IEE ++ + ++ ++ FN L + + ++HG++ DKE +M F + L Sbjct: 472 ICPLIEESEKLDVQNAIDVFNILQNKWGTKYRPGLMHGKLLPADKEQIMRDFNDKKIDCL 531 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ P ++ Sbjct: 532 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVXX 590 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAK 664 R+ ++ T DGF+++E DL+ R G+ G KQSG+P+F +A +HD +LEIAR+DA Sbjct: 591 XRMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQDAV 649 Query: 665 HILTQDPDLTSVRGQSIRILL 685 H++ ++ L + + + + LL Sbjct: 650 HMIFEENMLENKQYEKLVALL 670 >gi|301311100|ref|ZP_07217029.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 20_3] gi|300831163|gb|EFK61804.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 20_3] Length = 698 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 243/670 (36%), Positives = 370/670 (55%), Gaps = 21/670 (3%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG K + L K A + + DLLFY P +IDR K++EIS + + G I Sbjct: 14 GVGPKKADILQK-----EAGISSYEDLLFYFPYKYIDRSRFYKVAEISGNMPYIQLKGQI 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 + + + +DGTG I L++F + + + + + V GK + + Sbjct: 69 LYFDTLGEGRSKRLVGKFSDGTGTIDLVWF-KGLNYVTDKYRPNTEYIVFGKPTEFGHTY 127 Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190 + HP D + Y+ + ++ L + LPE + Sbjct: 128 NIPHPDIDSMEQADQVANGLTPFYNTSEKMKKSFLNSRAIQNLQYTLLSWLNWELPETLS 187 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 D+L++ S+ EA IH P A A+ RL +DEL Q+ +L K + Sbjct: 188 PDVLKRIHMMSMTEAVRNIHFPESAAKLR---DAQLRLKFDELFFIQLNILRTASVRKLK 244 Query: 251 I-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 + GI G + +PF T +Q+ +++I DM +M R+LQGDVGSGKTL Sbjct: 245 LKGIVFPTVGHYFNTFYKEYLPFELTNAQKRVVREIRIDMGSGRQMNRLLQGDVGSGKTL 304 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 V L++M A++ QA +MAP ILA QHY I + ++ + V ++TG+ + R K L Sbjct: 305 VGLLSMLLAIDNHCQACMMAPTEILATQHYATIMGFLKDMDVKVALLTGSTKKKERDKIL 364 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMT 427 IA G+ I+IGTHAL ++++ + L L I+DEQHRFGV+QR +L K T PHVL+MT Sbjct: 365 PAIASGEIQIVIGTHALIEETVVFSSLGLAIIDEQHRFGVEQRSRLWMKNTIVPHVLVMT 424 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T GD+D+S I E P GRKPI+T+ N+ ++ E L+ + +G++ Y Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTLHRYDNKKAQLYEFLRKEIQKGRQVYV 484 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 + P IE ++ +++ + F + E F + ++HGRM DK++ M F +G ++L+ Sbjct: 485 VYPLIEGNEKLDYKDLEAGFETFKEVFPEYKVCMVHGRMKAADKDTEMQKFISGEAQILM 544 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG E S CIL+ LS ++ Sbjct: 545 ATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGRGAEQSYCILVSSYKLSNDTRK 604 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKH 665 RL ++ N+ +GF IAE DL+ R G++ G +QSG L IA +L+ AR A+ Sbjct: 605 RLEIMVNSTNGFEIAEADLRLRGHGDLEGTRQSGEGIDLKIADLAADGQILQYARDIAQG 664 Query: 666 ILTQDPDLTS 675 +L +DP+L S Sbjct: 665 VLDEDPELLS 674 >gi|81428314|ref|YP_395314.1| ATP-dependent DNA helicase, RecG [Lactobacillus sakei subsp. sakei 23K] gi|78609956|emb|CAI55003.1| ATP-dependent DNA helicase, RecG [Lactobacillus sakei subsp. sakei 23K] Length = 680 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 221/661 (33%), Positives = 374/661 (56%), Gaps = 23/661 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL----QKRRPYKILLNDGT 98 DLL+Y P + D + +SE ++ VT+ G + + R ++L+N Sbjct: 32 DLLYYFPFRYEDLKVK-DLSEAVDQEKVTLKGTVVADPVVSRWGPGKTRLNVRLLINH-- 88 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 ++ ++ F+ + LK+ F G I V GK +N + V + Q + P A Sbjct: 89 -DVIMVTFFNQP-YLKDKFEAGVDIAVYGKWDARRNSLTGVKVLAV----QSADNPSFAA 142 Query: 159 VYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 +YS + K+I EA V+P+ I D+ ++ S E +H P + Sbjct: 143 IYSTNKNVRQGTLVKLIREAFDNYQSVIPDLIPADIRERYKLVSEVELIAGMHFP---ES 199 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKS 276 + AR + E Q+ L ++++ + E G+ + + ++ ++ +PF T + Sbjct: 200 YPEAKQARRTAIFHEFFLYQLQLQVIKQADRHVENGLALPYQNAALKEFIKTLPFDLTDA 259 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q+ + +I D+ M R+LQGDVGSGKT+VA IAM AAV AG QA +M P ILA+Q Sbjct: 260 QKRVVNEICLDLKAPAHMNRLLQGDVGSGKTIVAAIAMFAAVTAGFQAALMVPTEILAEQ 319 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 HY+ ++K + V ++TG+ RR L I G+ +II+GTHAL QD++ Y+KL Sbjct: 320 HYQSLQKLYAPMNVTVGLLTGSTTAKERRTLLADIESGRINIIVGTHALIQDAVVYHKLG 379 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 ++DEQHRFGV QR L +K P +L MTATPIPRTL +T+ G++D+S I E P GR Sbjct: 380 FAVIDEQHRFGVNQRRVLREKGLQPDMLAMTATPIPRTLAITAYGEMDVSTIDELPKGRI 439 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 PI+T + N++++ + ++ L++ + + I P I E ++ + ++ E + +L E F Sbjct: 440 PIETSWVRSNQVEQALSFVQKQLADNSQVFAITPLIAESEQMDLKNAEEIYATLAERFEP 499 Query: 517 S--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 +A++HG++ D +K +M +F N +LL++TTV+EVG+DV +A++++I +A+ FGLA Sbjct: 500 QYHVALLHGKLKDDEKNRIMTAFSNNEIQLLVSTTVVEVGVDVPNATVMMIFDADRFGLA 559 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG++ + C+L+ P ++ R++++ T +GF++A++DL+ R GE+ Sbjct: 560 QLHQLRGRVGRGKKKAYCLLIADPK-NQQGVDRMTIMTETTNGFVVAQKDLELRGPGEVF 618 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694 G +QSG+P F + P + L++A+++ + I T DP + ++ YL Q + + Sbjct: 619 GDRQSGLPVFKVGDPVADFASLQVAQQEVQKIFTVDPTFSQPAYAPLKA--YLAQQKQNY 676 Query: 695 Q 695 Q Sbjct: 677 Q 677 >gi|150009297|ref|YP_001304040.1| ATP-dependent DNA helicase RecG [Parabacteroides distasonis ATCC 8503] gi|256841865|ref|ZP_05547371.1| ATP-dependent DNA helicase RecG [Parabacteroides sp. D13] gi|298376914|ref|ZP_06986868.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_1_19] gi|149937721|gb|ABR44418.1| ATP-dependent DNA helicase RecG [Parabacteroides distasonis ATCC 8503] gi|256736759|gb|EEU50087.1| ATP-dependent DNA helicase RecG [Parabacteroides sp. D13] gi|298265898|gb|EFI07557.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_1_19] Length = 698 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 243/670 (36%), Positives = 370/670 (55%), Gaps = 21/670 (3%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG K + L K A + + DLLFY P +IDR K++EIS + + G I Sbjct: 14 GVGPKKADILQK-----EAGISSYEDLLFYFPYKYIDRSRFYKVAEISGNMPYIQLKGQI 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 + + + +DGTG I L++F + + + + + V GK + + Sbjct: 69 LYFDTLGEGRSKRLVGKFSDGTGTIDLVWF-KGLNYVTDKYRPNTEYIVFGKPTEFGHTY 127 Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190 + HP D + Y+ + ++ L + LPE + Sbjct: 128 NIPHPDIDSMEQADQVANGLTPFYNTSEKMKKSFLNSRAIQNLQYTLLSWLNWELPETLS 187 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 D+L++ S+ EA IH P A A+ RL +DEL Q+ +L K + Sbjct: 188 PDVLKRIHMMSMTEAMRNIHFPESAAKLR---DAQLRLKFDELFFIQLNILRTASVRKLK 244 Query: 251 I-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 + GI G + +PF T +Q+ +++I DM +M R+LQGDVGSGKTL Sbjct: 245 LKGIIFPTVGHYFNTFYKEYLPFELTNAQKRVVREIRIDMGSGRQMNRLLQGDVGSGKTL 304 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 V L++M A++ QA +MAP ILA QHY I + ++ + V ++TG+ + R K L Sbjct: 305 VGLLSMLLAIDNHCQACMMAPTEILATQHYATIMGFLKDMDVKVALLTGSTKKKERDKIL 364 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVLLMT 427 IA G+ I+IGTHAL ++++ + L L I+DEQHRFGV+QR +L K A PHVL+MT Sbjct: 365 PAIASGEIQIVIGTHALIEETVVFSSLGLAIIDEQHRFGVEQRSRLWMKNAIVPHVLVMT 424 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T GD+D+S I E P GRKPI+T+ N+ ++ E L+ + +G++ Y Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTLHRYDNKKAQLYEFLRKEIQKGRQVYV 484 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 + P IE ++ +++ + F + E F + ++HGRM DK++ M F +G ++L+ Sbjct: 485 VYPLIEGNEKLDYKDLEAGFETFKEVFPEYKVCMVHGRMKAADKDTEMQKFISGEAQILM 544 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG E S CIL+ LS ++ Sbjct: 545 ATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGRGAEQSYCILVSSYKLSNDTRK 604 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKH 665 RL ++ N+ +GF IAE DL+ R G++ G +QSG L IA +L+ AR A+ Sbjct: 605 RLEIMVNSTNGFEIAEADLRLRGHGDLEGTRQSGEGIDLKIADLAADGQILQYARDIAQG 664 Query: 666 ILTQDPDLTS 675 +L +DP+L S Sbjct: 665 VLDEDPELLS 674 >gi|309389035|gb|ADO76915.1| ATP-dependent DNA helicase RecG [Halanaerobium praevalens DSM 2228] Length = 685 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 248/666 (37%), Positives = 382/666 (57%), Gaps = 31/666 (4%) Query: 17 RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76 +GVG K++ LS++ + R DLL+Y P + DR ++S+I +I + Sbjct: 13 KGVGPKWAERLSQL----DIKTVR--DLLYYFPREYEDR---SQLSQIKYTKIGEKANFK 63 Query: 77 SQHSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI--- 129 + QK RP K+ +DG+ + +++ L+N F EG + +TGKI Sbjct: 64 VEVLKINYQKIRPNLDLLKVSFSDGSDVVNGIWY--NQAYLRNQFKEGDQYLITGKISEK 121 Query: 130 --KKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PV 184 +K K + I +P Y I + +N I +Y L GLS +K+I + + Sbjct: 122 NWRKYKRKEIN-NPVYEKIGSEASVLNTGRIVPIYPLTEGLSQRRLRKVIANVIKNYGSL 180 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 L + + ++LL+K FP + A +H P+ K + +R+RLA++E Q+ L + Sbjct: 181 LKDQLPRNLLEKYQFPDLKTAILGMHFPKNQKH---KNLSRQRLAFEEFFHLQLYALEEK 237 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 K+ K GI + + K+L + F T +Q+ + +I DM + M R+LQGDVGS Sbjct: 238 KKKTKFKGIKHEFKQSVNDKLLSQLNFELTAAQKRVLNEIEADMGSEKTMARLLQGDVGS 297 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKT+VA +A+ + G Q + MAP ILA+QH+ ++ ++ VEI+TG++ QA R Sbjct: 298 GKTIVAALALLQTLANGCQGIFMAPTEILAEQHFLNFQELLKDFDYKVEILTGSVKQAAR 357 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424 ++ I G+ +IIGTHALFQ ++ Y LV++DEQHRFGV+QR L +K +P +L Sbjct: 358 KEIEAEIKTGEIDLIIGTHALFQKALTYQNPGLVVIDEQHRFGVEQRHSLKEKGDSPDLL 417 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 +MTATPIPR++ + GD+D+S I + P GRK I T NR ++ L+ +++G++ Sbjct: 418 IMTATPIPRSMAMLIYGDLDLSVIDQMPPGRKKIATFWRRENRRKKIYSFLEEKINKGRQ 477 Query: 485 AYWICPQIEEKKE-SNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541 AY +CP IEE +E + E +N+L F + +A+IH + ++K+ +M+ F+ G Sbjct: 478 AYIVCPLIEESEEMPELLAAEELYNNLKTGFFKNNKLALIHSSVPALEKKEIMEKFRAGK 537 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +LIATTVIEVG+DV +ASI+IIENAE FGLAQLHQLRGRVGRG S CIL+ +P Sbjct: 538 IDILIATTVIEVGVDVSNASIMIIENAERFGLAQLHQLRGRVGRGSYQSYCILISNPR-G 596 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 +++ RL ++ + +GFLIAEEDLK R GE G KQ G+ +A LL AR Sbjct: 597 EDATRRLEIMCKSNNGFLIAEEDLKMRGPGEFFGTKQHGIDDLKVASLTADQELLAKART 656 Query: 662 DAKHIL 667 +A+ I+ Sbjct: 657 EAQAIV 662 >gi|307718497|ref|YP_003874029.1| ATP-dependent DNA helicase RecG [Spirochaeta thermophila DSM 6192] gi|306532222|gb|ADN01756.1| ATP-dependent DNA helicase RecG [Spirochaeta thermophila DSM 6192] Length = 683 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 249/696 (35%), Positives = 374/696 (53%), Gaps = 38/696 (5%) Query: 5 FLNPLFAPLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62 L + AP++T G+G K + K I + G DLL ++P + DR ++ Sbjct: 2 LLEDISAPITTLAGIGGKTARHFHKLGIRSVG--------DLLQHYPRDYEDRSTFTSLA 53 Query: 63 EI------SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNV 116 E + +T+ YI + S+ L +I +NDGT L+ F R L Sbjct: 54 EAHATGKATTVATITLMDYIGKPSNPVL------RIFINDGTELAALVCFGRN--FLSRK 105 Query: 117 FFEGRKITVTGKIK----KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFK 172 F G K+ V+G+ + KL++ ++ P+ F I +Y L + + Sbjct: 106 FSPGMKVFVSGQFEMRYGKLQSTRFIIEPY----TESPKEFGKILPIYPTTEDLPQTILR 161 Query: 173 KIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231 + AL + LP+L + + LL +S P + EA IH P D + AR RL Y Sbjct: 162 SAVQAALRQYLPLLDDPLPPSLLAARSLPPLPEALAAIHFP---PDRAALTRARTRLIYQ 218 Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 EL Q+ ++ + K ++ P++ + +++ R++PF T QE A+++I D + Sbjct: 219 ELFFLQVIVVRAAMKRKTQLQAPVHFPRTLQERVRRSLPFPLTPDQEKALEEIYADTTSP 278 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351 M R+LQGDVGSGKTLVAL+A +EAG Q M P +LA QH E I Sbjct: 279 RPMARLLQGDVGSGKTLVALLAALPYIEAGHQVAFMVPTELLALQHAETAHTLLSPFGIR 338 Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411 ++ G + A RR L I G+ ++IGTH LF D + Y L LVI+DEQH+FGV QR Sbjct: 339 TALLAGTLQPAARRTLLSAILRGEVDLVIGTHTLFSDDVAYRNLRLVIIDEQHKFGVSQR 398 Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471 +L +KA+ P +LLMTATPIPRT+ LT GD+D+S I P GRKP++T + + + ++V Sbjct: 399 ARLLEKASHPDLLLMTATPIPRTMALTLYGDMDMSTIKTMPPGRKPVRTHLAVLGKEEKV 458 Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530 ++ L +G +AY++ P I E ++ R+ L + +A+IH R+ D +K Sbjct: 459 YTWVEKELEKGHQAYFVYPLIGESEKLELRNAESMVEFLRRRYPRWKVALIHSRIPDEEK 518 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 E +M F GT ++L+AT+VIEVG++V A+ I+IE+AE FGLA LHQLRGRVGR + S Sbjct: 519 ERIMREFMQGTIRILVATSVIEVGVNVPTATCIVIEHAERFGLATLHQLRGRVGRSDRQS 578 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL-GIKQSGMPKFLIAQP 649 L+Y P L++ + RL +K T DGFLIAE+DL+ R G++L G Q+G + IA Sbjct: 579 YAFLVYSPDLTEEAKARLRTMKETTDGFLIAEKDLEIRGPGDLLDGTIQAGHLRLRIAHL 638 Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685 L+ RKD + +L +DP L IR L+ Sbjct: 639 TRDAPLMHEVRKDVEALLARDPGLLRPEHTLIRTLI 674 >gi|160947391|ref|ZP_02094558.1| hypothetical protein PEPMIC_01325 [Parvimonas micra ATCC 33270] gi|158446525|gb|EDP23520.1| hypothetical protein PEPMIC_01325 [Parvimonas micra ATCC 33270] Length = 675 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 240/682 (35%), Positives = 378/682 (55%), Gaps = 38/682 (5%) Query: 13 LSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70 L +G+G+K L+K I N LL Y P S+ID KISEI++E Sbjct: 3 LKDIKGIGEKKIALLNKLGIFTVNN--------LLEYFPYSYIDTTKFKKISEITKEG-- 52 Query: 71 TITGYISQHSSFQLQKRRPYKIL----LNDGTGEITLLFF----YRKTEMLKNVFFEGRK 122 + + + S + +K+R ++ +++ T+++F K + NV+ Sbjct: 53 SYSYRLKIISLMENRKKRNIRVTKFLAMDEEMNYCTIVYFNSIFISKNLKINNVY----- 107 Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182 + G+ K L + + P N ++ +I Y L G+S KII L + Sbjct: 108 -EMYGRAKLLGKNVEIQSP--TMQNKANIIGSIIPQ-YHLCKGISNLDIVKIIQNLLKKN 163 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 E I ++L + + S A IH P KD E A+ RLA+DE+ Q+++ Sbjct: 164 SYFEEKIPSNILNELNLESYDNAIRNIHFP---KDNESFIRAKRRLAFDEIFYFQLSMKK 220 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +++ + I I E ++++ F T SQ + DI +DM+ +M R++QGDV Sbjct: 221 LKRNNEDAIKFEIKDE---TFDFIKSLSFKLTNSQNKVLDDIFKDMTSDKQMNRLVQGDV 277 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 G GKT+++ +AM ++ G Q+V+MAP ILA+QHYE KK I VE++ G++ ++ Sbjct: 278 GCGKTIISFVAMFNVIKNGFQSVLMAPTEILARQHYESAKKLFFKYNIKVELLVGSLKES 337 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 ++ E+I +G+ IIIGTHA+FQ+ + Y L VI DEQHRFGV+QRL L++K+ P Sbjct: 338 EKKVIREKIENGEVDIIIGTHAVFQEKVVYKNLGFVITDEQHRFGVKQRLLLSKKSKNPD 397 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 +L+M+ATPIPRT+ L D+DIS I E P+GR +KT + N + + +K +SEG Sbjct: 398 ILVMSATPIPRTVGLVMFCDLDISTIDELPSGRGKVKTYFVDENYEERYMNFIKKHISEG 457 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNG 540 ++AY +CP ++E +SV+ + L E + + I IHG++ +DK+ +M F+NG Sbjct: 458 RQAYIVCPLVDESDTLELQSVINLYERLKERYFQDVEIEFIHGKLKPVDKDRIMKDFENG 517 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 K+L+ATTVIEVGI+V +++I++I NAE FGL+QLHQLRGR+GRG S CIL+ + Sbjct: 518 KIKVLVATTVIEVGINVPNSNIMVIYNAERFGLSQLHQLRGRIGRGNYESFCILVSNNK- 576 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 S N R+ ++ ++ DGF I+E+D R G+ILG +QSG +F I + LL+ A Sbjct: 577 STNVKKRMDIMCSSNDGFYISEQDFLLRGYGDILGYRQSGEARFKILNIQKDYELLKSAI 636 Query: 661 KDAKHILTQDPDLTSVRGQSIR 682 K IL D + Q ++ Sbjct: 637 KYVDEILKHDFNFDKEENQVVK 658 >gi|289435154|ref|YP_003465026.1| ATP-dependent DNA helicase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171398|emb|CBH27942.1| ATP-dependent DNA helicase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 682 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 236/681 (34%), Positives = 386/681 (56%), Gaps = 25/681 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P + +G+G++ + L ++ + DLL+ P + D R +S ++ E +T Sbjct: 8 PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLRD-LSLVAHEERIT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 I G + ++ R+ K+ T G++ + F+ + LK+ G +T++GK Sbjct: 61 IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKINVGETVTISGKWD 119 Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEW 188 K + +I N ++ +E VY L L +K A + E Sbjct: 120 KGRAQITASKVKIGAVENEEE-----LEGVYRLKGTLRNKTMQKYTRAAFDAYSSSIEEV 174 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247 I +LL+K EA ++H P+ + + AR R+ Y+E L Q+ + RK + Sbjct: 175 IPTNLLEKYQLMDRLEAVRVLHFPKNNDELK---QARRRMVYEEFLLFQLKMQFFRKIER 231 Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 +K GI IN + + + + ++PF+ TK+Q+ + +I DM M R+LQGDVGSGKT Sbjct: 232 EKSGGISINYDVEDLRHYIDSLPFALTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 291 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +VA IAM AA ++G Q+ +M P ILA+QH + + Q + V ++T ++ RR+ Sbjct: 292 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDVTVGLLTSSVKGKRRREL 351 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 L + +G ++IGTHAL QD + Y++L LVI DEQHRFGV QR L +K P VL MT Sbjct: 352 LAMLENGSVDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVTQRRVLREKGEYPDVLFMT 411 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T+ G++D+S I E PAGRK I+T + ++ VI ++ + +G + Y Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLERVIGFMEKEIDKGHQVYI 471 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545 ICP IEE ++ + ++ ++ FN L + + ++HG++ DKE +M F + L Sbjct: 472 ICPLIEESEKLDVQNAIDVFNILQNKWGTKYRPGLMHGKLLPADKEQIMRDFNDKKIDCL 531 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ P ++ Sbjct: 532 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGK 590 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAK 664 R+ ++ T DGF+++E DL+ R G+ G KQSG+P+F +A +HD +LEIAR+DA Sbjct: 591 ERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQDAV 649 Query: 665 HILTQDPDLTSVRGQSIRILL 685 H++ ++ L + + + + LL Sbjct: 650 HMIFEENMLENKQYEKLVALL 670 >gi|322373680|ref|ZP_08048216.1| ATP-dependent DNA helicase RecG [Streptococcus sp. C150] gi|321278722|gb|EFX55791.1| ATP-dependent DNA helicase RecG [Streptococcus sp. C150] Length = 672 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 244/678 (35%), Positives = 383/678 (56%), Gaps = 44/678 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEISEE 67 L +P++ +G G K + +K+ + DLL Y P + D ++ K I E+ + Sbjct: 4 LDSPIADLKGFGPKSAEKFTKL------DLHTVGDLLLYFPFRYED--FKSKSIFELMDG 55 Query: 68 RIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYR-----KTEMLKNVFFEG 120 ITG + ++ Q KR + G I + FF + K EM G Sbjct: 56 EKAVITGTVVTPANVQYYGFKRNRLSFKIKQGEAVIAISFFNQPYLVDKIEM-------G 108 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 ++ + GK + K+ + + + +D P VY + G+S K I A Sbjct: 109 AEVAIFGKWDQKKSAVTGMK---VLAQVEDDMQP----VYHVAQGVSQAQLIKAIKAAFD 161 Query: 181 R--LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L +L E + + LL K EA +H P KD A R ++EL Q+ Sbjct: 162 SGALNLLEESLPQVLLDKYRLMGRQEAVRAMHFP---KDLAEYKQALRRTKFEELFYFQM 218 Query: 239 ALLLMRKQFKKEI-GIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 L +++ + K E G+ I E KI KI +PF T++Q+ ++ +IL DM M R Sbjct: 219 NLQVLKAENKSETNGLAIAYDEAKIKDKIAA-LPFPLTEAQQRSLSEILADMKSGAHMNR 277 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 +LQGDVGSGKT++A +AM A AG Q+ +M P ILA+QHY+ ++ +++ ++T Sbjct: 278 LLQGDVGSGKTVIASLAMYGAYTAGFQSALMVPTEILAEQHYQSLQGLFPELEVV--LLT 335 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 M A ++ AL +I G+A +I+GTH+L QD++ Y+ L LVI DEQHRFGV QR + Sbjct: 336 SGMKAADKKVALSKIESGEAQMIVGTHSLIQDAVTYHSLGLVITDEQHRFGVNQRRIFRE 395 Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 K P VL+MTATPIPRTL +T+ G++D+S I + PAGRKPI T + ++D V+ +K Sbjct: 396 KGDNPDVLMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKPIITRWVKHEQLDTVLTWIK 455 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVM 534 L + + Y+I P IEE + + ++ V L E F ++++A++HGRM + +K+ +M Sbjct: 456 GELEKDAQVYFISPLIEESEALDLKNAVALHQELTEFFGDSATVALMHGRMKNDEKDQIM 515 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 FK+ ++L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG++ S C+L Sbjct: 516 QDFKDRKSQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGDKQSYCVL 575 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 + +P + R+ + T DGF++AEEDLK R GEI G +QSG+P+F +A + Sbjct: 576 VANPK-NDTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYN 634 Query: 655 LLEIARKDAKHILTQDPD 672 +LE AR+ A I++ DP+ Sbjct: 635 ILEEARRVASQIVS-DPN 651 >gi|295397853|ref|ZP_06807916.1| DNA helicase RecG [Aerococcus viridans ATCC 11563] gi|294973898|gb|EFG49662.1| DNA helicase RecG [Aerococcus viridans ATCC 11563] Length = 683 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 230/663 (34%), Positives = 375/663 (56%), Gaps = 30/663 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 ++ +GVG K + L K+ + DLL++ P + D + E+ + ++ Sbjct: 9 VTVLKGVGAKKAALLEKV------GISTVEDLLYHFPFRYEDVSVKSA-GELVDNTKASV 61 Query: 73 TGYISQHSSFQL----QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 G + Q + R Y++ ++ E+ + F+ + + KN+ ++I V GK Sbjct: 62 KGVVVTEPVVQYFGRNRNRLTYRLAMDH---EVLQVIFFNQPYLKKNIQV-NQEIVVYGK 117 Query: 129 IKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVL 185 + K +I+ + +F N QD EA+Y L GLS +I +A+ ++ Sbjct: 118 FEAAKQQIVGIK---LFSNHQDEESGDNDFEAIYHLTQGLSTKSLTDLIKQAIDLYGDLV 174 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 E + + L +K A IH P ++ AR +L Y EL + L + Sbjct: 175 VELLPETLREKYQLMPHKLAIQQIHFPDSQEN---NRQARRQLKYQELFLYALKLQWRKL 231 Query: 246 QFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 Q ++ G I + + ++ IPF T Q++ + +I D+ Q +M R+LQGDVGS Sbjct: 232 QQRRIANGAQILYDNDHLRDFIQTIPFELTAGQKAVVNEICADLRQPFQMNRLLQGDVGS 291 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKT+VA+I + A ++AG Q +M P ILA QHY I + + T V ++TG+ R Sbjct: 292 GKTVVAMICLVATIDAGFQGAMMVPTEILADQHYASISGFFEKTDYKVALLTGSTKTKAR 351 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA--TAPH 422 R+ L + +G ++IGTHAL QD +++ L +V++DEQHRFGV QR KL K AP+ Sbjct: 352 REILADLVNGDIDLLIGTHALIQDDVKFADLGMVVIDEQHRFGVNQRSKLVAKGEFKAPN 411 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 VL MTATPIPRTL +T +GD+D+SK+ E P+GR PI+T + NR +V E++ + + +G Sbjct: 412 VLYMTATPIPRTLEITMMGDMDVSKLKEMPSGRIPIETSWVRHNRQAQVDEQIWLEVRKG 471 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNG 540 ++ Y ICP I E + ++ + + F S S+ ++HG+MS +K+ VM++FKN Sbjct: 472 RQVYIICPLIGESEALEAQNAEHIYETYVAQFGSQFSVGLLHGQMSADEKDQVMEAFKNN 531 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L++TTVIEVG++V +A+ ++I +A+ FGLAQLHQLRGRVGRGE S C+L+ P Sbjct: 532 DIQILVSTTVIEVGVNVPNATYMVILDADRFGLAQLHQLRGRVGRGEYASYCVLVADPR- 590 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + N R++++ + DGF ++++DL+ R G+ G +QSG+P+F +A P +LE+AR Sbjct: 591 TDNGKQRMNIMVESTDGFYLSQQDLELRGAGDYFGTRQSGLPEFKVADPIEDGVILEVAR 650 Query: 661 KDA 663 +DA Sbjct: 651 EDA 653 >gi|152976221|ref|YP_001375738.1| ATP-dependent DNA helicase RecG [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024973|gb|ABS22743.1| ATP-dependent DNA helicase RecG [Bacillus cytotoxicus NVH 391-98] Length = 682 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 236/664 (35%), Positives = 380/664 (57%), Gaps = 35/664 (5%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G + S L ++ A+ LL + P + D + ++++ E VT Sbjct: 8 PVTDVKGIGTETSELLHEMGIYTVAH------LLEHFPYRYED-YAMKDLADVKHEERVT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFF----YRKTEMLKNVFFEGRKITV 125 + G I Q ++ ++ + G IT + F Y++ L V +T+ Sbjct: 61 VEGKIHSAPILQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLKLDEV------VTI 114 Query: 126 TGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP- 183 TGK + + I + H+ F Q+ IE VYS+ L+V ++ I +AL Sbjct: 115 TGKWDQHRQTISVSELHFGPFVRKQE-----IEPVYSVKGKLTVKQMRRFIAQALKEYGN 169 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 + E + LL + EA +H P +D + AR R Y+E Q+ + + Sbjct: 170 AIVELLPNGLLGRYKLLPRYEALRALHFPVNQEDLK---QARRRFVYEEFFLFQLKMQAL 226 Query: 244 RK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 RK + + G +V + ++ + +PF T +Q+ I +IL+DM RM R+LQGDV Sbjct: 227 RKIERENSQGTKKDVSVEELKEFIDALPFPLTGAQQRVIAEILKDMRSPYRMNRLLQGDV 286 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKT+VA IA+ AA A Q +M P ILA+QH++ + + + + VE++T ++ A Sbjct: 287 GSGKTVVAAIALYAAKLAHYQGALMVPTEILAEQHFQSLTEIFSHFHLSVELLTSSVKGA 346 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 RR+ L ++ G+ I++GTHAL QD + ++KL LVI DEQHRFGV QR L +K +P Sbjct: 347 RRREILAKLEQGEIDILVGTHALIQDEVIFHKLGLVITDEQHRFGVAQRRVLREKGESPD 406 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D V+ + + +G Sbjct: 407 VLFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWTKHDMLDRVLNFVAKEVKKG 466 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNG 540 ++AY ICP IEE ++ + ++ ++ + L H+ + ++HGR+S +KE VM+ F Sbjct: 467 RQAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGEFQVGLMHGRLSAQEKEEVMEQFSEN 526 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+ P Sbjct: 527 KVQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK- 585 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIA 659 S+ R+ ++ T DGF+++E+DL+ R G+ G KQSG+P+F +A +HD LE A Sbjct: 586 SETGQERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADI-VHDYRALETA 644 Query: 660 RKDA 663 R+DA Sbjct: 645 RQDA 648 >gi|227550756|ref|ZP_03980805.1| DNA helicase RecG [Enterococcus faecium TX1330] gi|257896396|ref|ZP_05676049.1| ATP-dependent DNA helicase RecG [Enterococcus faecium Com12] gi|293379481|ref|ZP_06625625.1| ATP-dependent DNA helicase RecG [Enterococcus faecium PC4.1] gi|227180074|gb|EEI61046.1| DNA helicase RecG [Enterococcus faecium TX1330] gi|257832961|gb|EEV59382.1| ATP-dependent DNA helicase RecG [Enterococcus faecium Com12] gi|292642004|gb|EFF60170.1| ATP-dependent DNA helicase RecG [Enterococcus faecium PC4.1] Length = 678 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 233/665 (35%), Positives = 379/665 (56%), Gaps = 27/665 (4%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 + L P++ GVG+K + L+ + DLL Y+P + D R ++EI Sbjct: 1 MRSLDDPITMLAGVGEKRAASLASL------GIQTIEDLLTYYPFRYEDIQER-NLNEIQ 53 Query: 66 EERIVTITGYISQ---HSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 ++ VT+ G + + F +K R ++++ ++ FF + LK Sbjct: 54 DQEKVTLKGIVVSPPVMNRFGYKKSRLQFRMMQEHDVFNVS--FFNQP--YLKEKVILSE 109 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 +I V GK R + + + D P+ S+ VDL KK E + Sbjct: 110 EIAVYGKWDA--KRKALNGMKILGSQTMDDFSPIYHVNKSIRQTTLVDLIKKGFQEYGT- 166 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 ++ E + +L++K A A +H P K+ E A+ R+ ++E Q+ L Sbjct: 167 --LIEENLPNNLVEKYRLLDRASAVRSMHFP---KNHEENHQAKRRVVFEEFFLFQMRLQ 221 Query: 242 LMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 ++K K E G+ I + + ++ + +PF T +Q+ +I +D+ M R+LQG Sbjct: 222 GLKKAEKAETNGLEILYDVQKLKEFTQKLPFELTNAQKRVTNEICRDLRSPQHMQRLLQG 281 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA IA+ A V AG Q +M P ILAQQH E +++ ++ V ++TG+ Sbjct: 282 DVGSGKTVVAAIALYATVTAGFQGALMVPTEILAQQHMESLQQLFDPNEVTVALLTGSTK 341 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 RR+ LE++ G+ +++IGTHAL QD +++ L LVI DEQHRFGV QR L +K Sbjct: 342 TKERRELLEKLERGEINVVIGTHALLQDGVEFQNLGLVITDEQHRFGVNQRKVLREKGWR 401 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 P VL MTATPIPRTL +T+ G++D+S I E PAGR PI+T + ++D V++ + L+ Sbjct: 402 PDVLFMTATPIPRTLAITAYGEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTRKELA 461 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFK 538 G + Y ICP IEE + + ++ VE + L E F + ++HG+M + +KE +M++FK Sbjct: 462 RGHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAFK 521 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 + ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P Sbjct: 522 DNQMQILVSTTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVANP 581 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 ++ R+ ++ T +GF+++E+DL+ R GE+ G +QSG+P+F IA ++LE+ Sbjct: 582 K-NELGVERMKIMTETTNGFVLSEKDLELRGPGEVFGFRQSGLPQFAIADLVTDGNVLEV 640 Query: 659 ARKDA 663 AR++A Sbjct: 641 AREEA 645 >gi|154493809|ref|ZP_02033129.1| hypothetical protein PARMER_03152 [Parabacteroides merdae ATCC 43184] gi|154086422|gb|EDN85467.1| hypothetical protein PARMER_03152 [Parabacteroides merdae ATCC 43184] Length = 698 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 242/670 (36%), Positives = 370/670 (55%), Gaps = 21/670 (3%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG K + L K A + + D+LFY P +IDR K++E++ + + + G I Sbjct: 14 GVGPKKAEILQK-----EAGISSYEDMLFYFPYKYIDRSRFYKVAEVTGDMPYIQMKGRI 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 + + R DGTG I L++F +L + G V GK + + Sbjct: 69 LFFDTVGEGRTRRLIGKFTDGTGTIDLVWFKGINYVLDKIK-TGVDYIVFGKPTEFGHIY 127 Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190 + HP + D + Y+ + ++ L + LPE + Sbjct: 128 NIPHPDIDPLDQADKVANGLTPFYNTSEKMKKSFLNSRAIQNLQYTLLSGLNWTLPETLP 187 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 D+L + S EA +H P A+ RL +DEL Q+ +L K + Sbjct: 188 PDVLNRIRMMSFPEAIRNVHFPESVDKLR---KAQLRLKFDELFFIQLNILRTSNLRKLK 244 Query: 251 I-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 + GI G + +PF T +Q+ +++I DM +M R+LQGDVGSGKTL Sbjct: 245 LRGIVFPSVGDYFNTFYKEYLPFELTNAQKRVVREIRADMGSGRQMNRLLQGDVGSGKTL 304 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VAL++M AV+ QA +MAP ILA QHY + + ++ I V ++TG+ + R K L Sbjct: 305 VALLSMLLAVDNHCQACMMAPTEILATQHYATVMGFLKDMDIKVALLTGSTKKKERNKIL 364 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAPHVLLMT 427 IA G+ ++IGTHAL ++++ + L L I+DEQHRFGV+QR +L T+ A PHVL+MT Sbjct: 365 PAIASGEIQLVIGTHALIEETVVFSSLGLAIIDEQHRFGVEQRSRLWTKNAVVPHVLVMT 424 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T GD+D+S I E P GRKPI+TV N+ ++ + L+ + +G++ Y Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTVHRYDNKKAQLYDFLRKEIGQGRQVYV 484 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 + P IE ++ +++++ E F + E F + ++HG+M DKE+ M F +G ++L+ Sbjct: 485 VYPLIEGSEKLDYKNLEEGFETFKEVFPEYKVCMVHGKMKAADKEAEMQKFISGEAQILM 544 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG E S C+L+ LS + Sbjct: 545 ATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGRGAEQSYCVLVSSYKLSNETRK 604 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKH 665 RL ++ ++ +GF IAE DL+ R G++ G +QSG L IA +L+ AR A+ Sbjct: 605 RLEIMVSSNNGFEIAEADLRLRGHGDLEGTRQSGEGIDLKIANLAADGQILQYARDIAQD 664 Query: 666 ILTQDPDLTS 675 +L +DPDL S Sbjct: 665 VLNEDPDLLS 674 >gi|193215249|ref|YP_001996448.1| ATP-dependent DNA helicase RecG [Chloroherpeton thalassium ATCC 35110] gi|193088726|gb|ACF14001.1| ATP-dependent DNA helicase RecG [Chloroherpeton thalassium ATCC 35110] Length = 711 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 248/723 (34%), Positives = 383/723 (52%), Gaps = 45/723 (6%) Query: 7 NPLF-APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 N F A L+ +GVG K + K A + DLL Y P ++DR I +S Sbjct: 5 NEFFRAELTYLKGVGPKRAAAFEK------AGIKNYEDLLNYFPRRYLDRTQIKSIGALS 58 Query: 66 EERIVTITGYISQ-HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124 E T+ G + Q K + + L D TG I L++F + L + EG + Sbjct: 59 EGETATLVGEVRQIRFDGANWKTKRFIASLYDKTGRIDLVWF-QGANYLSKMLREGDALA 117 Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQD-------------VNFPLIEAVYSLPT-----GL 166 V GKI ++HP + N + N I +YSLP GL Sbjct: 118 VHGKIGFFNGTPQLMHPDFDKLNGAERSDDDDLKNDFELFNTGKIVPLYSLPEALKRGGL 177 Query: 167 SVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR 225 + + ++I+ L + L + E + + + +A A+ IH P E A+ Sbjct: 178 NSRIMRRIVRNLLDKSLGHIEENLPASICENYRLMPLAMAYEQIHFPASP---ELLEQAK 234 Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVE-----GKIAQKILRNIPFSPTKSQESA 280 R+ + EL Q L +RK ++ ++ E G+ K+ +NIPF T +Q+ Sbjct: 235 FRMKWTELFYMQ-TLFAVRKC---DVETSVSAEKFETVGEFTNKLFKNIPFEMTGAQKEV 290 Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340 I++I +D+ ++M R++QGDVGSGKTLVA+ AM A++ G Q MAP ILA QH+ Sbjct: 291 IREIRRDLKSGSQMNRLVQGDVGSGKTLVAIFAMMIALDNGAQCAFMAPTEILATQHFLT 350 Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400 +KK+ + + + ++ G +A R + L I G+ I +GTHAL + + + L L ++ Sbjct: 351 LKKFLEPLGVKIALLVGKQRKALRTEILAGIESGETQITVGTHALIEGKVVFENLGLAVI 410 Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460 DEQHRFGV QR L KA PH+LLMTATPIPRTL +T GD+D+S I E P RKPI T Sbjct: 411 DEQHRFGVMQRKALQDKAVNPHILLMTATPIPRTLTMTLFGDLDVSIINEMPKNRKPIVT 470 Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSI 518 + + ++EV E +K + +G++AY + P +EE ++ + + E L + + Sbjct: 471 KLRHESEVEEVYEFIKSEIRKGRQAYIVYPLVEESEKMDLAAATEAHEELKDTVFDMCRV 530 Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578 +IHG++ +KE M++F+NG ++L+ TTVIEVG+DV +A++++I++AE FGLAQLHQ Sbjct: 531 GLIHGQLFPYEKEDEMEAFRNGKSRILVGTTVIEVGVDVPNATVMVIQHAERFGLAQLHQ 590 Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638 LRGRVGRGE S C L+Y L+ ++ RLS ++ + DGF ++E D + R G ILG +Q Sbjct: 591 LRGRVGRGEAQSYCFLVY-SKLTPDAKERLSAMEESTDGFRLSEIDARLRGAGNILGTEQ 649 Query: 639 SGMPKFL-IAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFI 697 SG+ L +A +L AR+ A ++ D L + R YL Y++ ++ Sbjct: 650 SGIISDLKVANLNEDSHILASAREAAFTLVRDDKQLRKPENKPARD-YYLKHYHDRYKLA 708 Query: 698 RAG 700 G Sbjct: 709 DVG 711 >gi|332300534|ref|YP_004442455.1| DEAD/DEAH box helicase domain protein [Porphyromonas asaccharolytica DSM 20707] gi|332177597|gb|AEE13287.1| DEAD/DEAH box helicase domain protein [Porphyromonas asaccharolytica DSM 20707] Length = 697 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 238/690 (34%), Positives = 381/690 (55%), Gaps = 23/690 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL+ G+G K + +++ ++ + DLL+Y P + DR I ++ Sbjct: 4 LTTPLADLPGLGTKRAQLIAEELDLHT-----YRDLLYYIPYRYADRRVIYPIGTLTPSM 58 Query: 69 I-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 V + G + S+ L ++ L D TGE+ LL +++ ++ G K V G Sbjct: 59 TEVQVEGILQPFSAPSLGRKSNLSARLMDDTGEL-LLVWFKGHNYIQRALTPGCKYIVYG 117 Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS---VD-LFKKIIVEALSRLP 183 K++ N++ + HP + + + VY L +D F ++ L + P Sbjct: 118 KLQLFNNQLQITHPEIKPADKPSPSVGGYQPVYRTTERLKRARIDSAFLGRYIDQLLQSP 177 Query: 184 V--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL- 240 +PE + + L+ + + A IH+P + E A+ RL YDEL + L Sbjct: 178 YFSIPETLSEPLVAHRHLAPLQTAIRWIHHP---QSVEQAQVAKFRLKYDELFYLNLYLR 234 Query: 241 -LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L + ++ + E G ++ GK+ + +P+ T +Q+ +++I +D + +M R+LQ Sbjct: 235 RLAVMQRMRYE-GYRLDQVGKLFNGLYYALPYDLTGAQKRVLREIRRDTNSGAQMNRLLQ 293 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKTLVAL AM AV+ G QA ++AP ILAQQHYE I ++ + + + ++TG+ Sbjct: 294 GDVGSGKTLVALFAMLLAVDNGYQACMLAPTEILAQQHYETISEFVEGLDVSIALLTGSS 353 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA- 418 RR+ L +A+G I+IGTHA+ ++ + ++KL + ++DEQHRFGV QR KL K Sbjct: 354 KTRERRETLSALANGSLSILIGTHAILEERVAFHKLGMAVIDEQHRFGVAQRSKLWGKNV 413 Query: 419 -TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 T PH+L+M+ATPIPRTL +T GD+++S I E P GRKPI TV I + + + Sbjct: 414 LTLPHILVMSATPIPRTLAMTMYGDLEVSVIDEMPPGRKPITTVQIAEKKKKTLYSLINE 473 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDS 536 ++ G++ Y + P IE +ES+F ++ + E F + +HGR+S DK M+ Sbjct: 474 TINRGQQIYVVFPMIEGTEESDFANLEVGYKEYVERFGEERVVYVHGRLSAEDKAEQMER 533 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F +G +L+ATTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ Sbjct: 534 FASGEVPILLATTVIEVGVNVPNATVMVINDAQRFGLAQLHQLRGRVGRGGDKSYCILVT 593 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSL 655 L ++ R+ + T+DGF IAEED++ R G++ G +QSG + IA P +L Sbjct: 594 PDDLQGDAKQRIDTMVATQDGFKIAEEDMRLRGFGQMEGTRQSGTLAGIRIADPVADYNL 653 Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILL 685 L + R D ++L P L + RI L Sbjct: 654 LALTRLDVNYLLDYSPLLDKPDTELYRINL 683 >gi|116513187|ref|YP_812094.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. cremoris SK11] gi|116108841|gb|ABJ73981.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. cremoris SK11] Length = 681 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 235/643 (36%), Positives = 363/643 (56%), Gaps = 26/643 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGE 100 DLL Y P + D R + E+ + TI G + ++ Q KR + +G Sbjct: 46 DLLLYFPFRYEDFASR-SVFELVDGEKATIIGTVVTPANVQYYGFKRNRLSFKIKEGEAV 104 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160 + + FF + L N G++I V GK ++ K +++ + + D +E VY Sbjct: 105 VAVSFFNQP--YLANKVEVGKEIAVYGKWEQAKQQLMGMK---VVAQVDDG----LEPVY 155 Query: 161 SLPTGLSVDLFKKIIVEALSR--LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 L G+ K+I + L LPE + + L++K + EA +H P +D Sbjct: 156 HLTAGMKQSQLVKVIHQVFESGLLSELPENLPEFLIEKYRLMNRQEAVLAMHFP---EDM 212 Query: 219 EWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 E A R+ ++EL Q+ L L K+ G+ + E + K + ++PF T Q Sbjct: 213 EAHKQALRRVKFEELFMFQLKLQALKNKEKSGRAGLQVIFEQEEIDKKISDLPFELTGGQ 272 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 A+ +IL DM M R+LQGDVGSGKT+VA ++M AA A QA IM P ILA+QH Sbjct: 273 SRALTEILDDMKSPYHMNRLLQGDVGSGKTVVASLSMYAACLANFQAAIMVPTEILARQH 332 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 + ++ QI ++ + A RR+ L +A G H+++GTHAL Q+ + +Y L L Sbjct: 333 FANLQALFPELQI--SLLVSGLKAAERREILADLASGHTHMVVGTHALIQEGVDFYNLGL 390 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI DEQHRFGV QR L +K P VL+MTATPIPRTL +T+ GD+D+S I E P GR+P Sbjct: 391 VITDEQHRFGVNQRKILREKGQNPDVLMMTATPIPRTLAITAFGDMDVSIIDELPKGRQP 450 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-- 515 I T + + EV+ +K ++ + Y+I P IEE + + ++ F L+++F Sbjct: 451 ITTRWVKHEQFSEVLSWVKGEVANDSQVYFISPLIEESETLDLKNAEALFAELNDYFGLF 510 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + I ++HG+M + +K+ +M FK +L++TTVIEVG+DV +A+I++I +A+ FGL+Q Sbjct: 511 AKIGLLHGKMKNDEKDQIMQEFKAKKLDILVSTTVIEVGVDVPNATIMVIMDADRFGLSQ 570 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG + S IL+ +P S + R+ ++ T++GF++AEEDLK R GEI G Sbjct: 571 LHQLRGRVGRGTKKSYAILVANPK-SDSGKQRMKIMTETQNGFVLAEEDLKMRGSGEIFG 629 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD---PDLTS 675 ++QSG+P+F+ A ++LE+AR++A I + PDL + Sbjct: 630 LRQSGLPEFIAADLVNDYNILEVARQEAVEIFKKADEFPDLIA 672 >gi|258645745|ref|ZP_05733214.1| ATP-dependent DNA helicase RecG [Dialister invisus DSM 15470] gi|260403114|gb|EEW96661.1| ATP-dependent DNA helicase RecG [Dialister invisus DSM 15470] Length = 697 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 218/638 (34%), Positives = 359/638 (56%), Gaps = 15/638 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99 DL+ Y+P + D ++++S E + G + + ++ RR IL L DGTG Sbjct: 50 DLISYYPRRYEDWTRITPMADLSYEMETAVYGTVVEIR--EVHPRRNLSILTVTLVDGTG 107 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-FPLIEA 158 + L++F + + K F G I GKI+ + + + +++++ F + Sbjct: 108 AVNLVYFNQPWK--KEQFAYGSNILAYGKIEYNYRKWQISNADTEAVAAEELHAFKKLVP 165 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 VY L G+ + +I A+ + E + D+L ++ A +H+P + Sbjct: 166 VYPLTEGIRASQMRAMIRFAIDHAEGIRENLPADVLVREHLMGRMAAIRGMHDP---AGW 222 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQ 277 E AR R A++EL Q + L+RK+ + + +GI G + ++++ PF+ T+ Q Sbjct: 223 EEQRAARRRTAFEELFFMQAGIQLLRKRRETDNVGIKCMPSGNLVHEVMKKFPFALTEGQ 282 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 +S +DI M M R++QGDVGSGKT +A++A+ VE G Q +MAP +LA QH Sbjct: 283 KSVFRDIEDSMEGIVPMQRLVQGDVGSGKTAIAILALTKIVENGYQGALMAPTEVLAAQH 342 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 ++ ++ + + ++G+ A R++ LE++ G HI+IGTHAL ++++ + L L Sbjct: 343 FKTFQQVFKGMPVKTAYLSGHTKAAERKEILEQLKDGSIHILIGTHALIEENVVFSALGL 402 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI DEQHRFGV+QR L K +PHVL+MTATPIPRT+ L+ GD+D+S I P GR P Sbjct: 403 VITDEQHRFGVKQRQALESKGKSPHVLIMTATPIPRTMALSVYGDLDVSFIKGMPPGRHP 462 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--T 515 +KT ++ + + + +K + G +AY +CP +E+ ++ + + V + +L +H Sbjct: 463 VKTYVVGSHMLQRIFRFMKKEMESGHQAYVVCPLVEQSEKQDLAAAVSVYENLRDHVFPQ 522 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + ++HGRM + +KE VM+ F+ G KLL+AT+VIEVG++V DA+++ + A+ FGL+Q Sbjct: 523 FGVGLVHGRMKNAEKEQVMEDFRKGKFKLLVATSVIEVGVNVPDATVMFVYGADRFGLSQ 582 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG+E + C+ LY ++ + R+ ++ DG L+AE+DL R GE G Sbjct: 583 LHQLRGRVGRGKEQAYCV-LYTDNQNETTQLRMKLMCEIRDGALLAEKDLLLRGAGEFFG 641 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 Q GMP A LLE+A+ DAK + + D Sbjct: 642 YHQHGMPDLKAADIVRDLPLLELAKHDAKEAVDKGLDF 679 >gi|319955243|ref|YP_004166510.1| ATP-dependent DNA helicase recg [Cellulophaga algicola DSM 14237] gi|319423903|gb|ADV51012.1| ATP-dependent DNA helicase RecG [Cellulophaga algicola DSM 14237] Length = 701 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 256/691 (37%), Positives = 378/691 (54%), Gaps = 41/691 (5%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 N L P++ +GVG + L + + DL+ P +ID+ KI+ + + Sbjct: 4 NFLQTPIAYLKGVGPNRASTLQSELGI-----QTYQDLINLFPHRYIDKTQYYKINLLQQ 58 Query: 67 ERI-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 V + G I+ S +K D TG++ L++F + + +N+ + V Sbjct: 59 NTSEVQVVGKITHIKSVAQKKGNRLVATFLDDTGKMELVWFRGQKWIRENLKLNVPYV-V 117 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLS---------VDLFKKII 175 GK M HP + + ++ VY LS L ++I Sbjct: 118 FGKTNFYNGTFSMPHPEMELLVDHEKGLKIYMQPVYPSTEKLSNKGITNRVLSKLIQQIF 177 Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235 VE + E + ++++ S +EA IH P K+ E + A+ RL ++EL Sbjct: 178 VELNGKFT---EALSPKIIEELHLISKSEAMFNIHFP---KNQELLAKAQFRLKFEELFY 231 Query: 236 GQIALLLMRKQFKKEI-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNR 293 Q+ L+ KK I G P + G I N +PF T +Q+ +K+I D+ + Sbjct: 232 IQLQLIAKNMLHKKRIKGFPFDKVGTIFTDFYNNHLPFELTNAQKRVLKEIRSDLGSNAQ 291 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R+LQGDVGSGKT+VAL+AM A++ G QA +MAP ILA QH+ I++ + I V Sbjct: 292 MNRLLQGDVGSGKTIVALMAMLLAIDNGFQACLMAPTEILANQHFVGIQELLEGVGITVS 351 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++TG++ ++ R+ E++ G+ I+IGTHAL +D +QY L L IVDEQHRFGV QR K Sbjct: 352 LLTGSVKKSARKVIHEQLESGELQILIGTHALLEDKVQYKNLGLAIVDEQHRFGVAQRSK 411 Query: 414 LTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 L K T PHVL+MTATPIPRTL ++ GD+DIS I E P GRKPIKTV +R D Sbjct: 412 LWHKNTIPPHVLVMTATPIPRTLAMSLYGDLDISVIDELPPGRKPIKTV----HRYDS-- 465 Query: 473 ERLKVV------LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHG 523 RLKV + +G++ Y + P I+E + +++ +++ + S+ F I+I+HG Sbjct: 466 NRLKVFQFIREEIKKGRQIYVVYPLIQESEVLDYKDLMDGYESIVRDFPQPEYQISIVHG 525 Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583 +M +DKE M F G ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRV Sbjct: 526 QMKPVDKEYEMQRFVKGETQIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRV 585 Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643 GRG + S CIL+ LS + TRL + T DGF IAE DLK R G+++G +QSGM Sbjct: 586 GRGADQSFCILMTSFKLSTEAKTRLETMVRTNDGFEIAEVDLKLRGPGDLMGTQQSGMLN 645 Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 IA + +L+ AR A +L DP L Sbjct: 646 LKIADIVRDNDILKTARYYALQLLKDDPTLA 676 >gi|87302807|ref|ZP_01085618.1| ATP-dependent DNA helicase RecG [Synechococcus sp. WH 5701] gi|87282690|gb|EAQ74648.1| ATP-dependent DNA helicase RecG [Synechococcus sp. WH 5701] Length = 862 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 223/651 (34%), Positives = 358/651 (54%), Gaps = 31/651 (4%) Query: 47 YHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILL----NDGTGEIT 102 ++P ++D +I E+ TI + + +F R P ++L +D TG + Sbjct: 195 HYPRDYLDYANLVRIRELVPGSTATIVATVQRSHAFA-SPRNPRLVILELQLHDITGRLR 253 Query: 103 LLFFYRKT--------EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP 154 L F+ + + F G + +G +++ + P +S N P Sbjct: 254 LSKFFAGRRFSSPGWLKAQQRQFPPGCSVAASGLVRQTPYGPTLQDPLLEVLDSP--NTP 311 Query: 155 L-------IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFN 207 + + VY+L GL + ++ I L+ + + L +++ A A+ Sbjct: 312 VRSRQIGRLVPVYALTEGLGAERLRQAIQTVLTAAAHWGDPLPAALRRQEGLQDRATAWR 371 Query: 208 IIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV---EGKIAQK 264 +H+P D + R RL +DE L Q++LL R Q + P+ + + + Sbjct: 372 GLHDPADRDDLRAS---RHRLVFDEFLLLQLSLLQRRAQLARRPARPLRLPRGQSSLMAS 428 Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324 L +PF T++Q + DI D+ Q+ M R+LQGDVGSGKT+VA+ A+ A+EAG Q Sbjct: 429 FLELLPFQLTEAQRRVLADIQADLEQEQPMARLLQGDVGSGKTVVAIAALLVAIEAGCQG 488 Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384 +MAP +LA+QH + ++ + ++TG+ P RR+ L+ +A+GQ +++GTHA Sbjct: 489 ALMAPTEVLAEQHARKLGEWLSQLHVSTALLTGSTPAGRRRQLLQDLANGQLQLLVGTHA 548 Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444 L +D + + +L LV+VDEQHRFGV+QR +L K PH+L MTATPIPRTL L+ GD++ Sbjct: 549 LLEDPVAFARLGLVVVDEQHRFGVRQRDRLMGKGLQPHLLTMTATPIPRTLALSVHGDLE 608 Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504 +S+I P GR PI+T ++ + E E ++ ++ G++AY + P +EE + + RS V Sbjct: 609 VSQIDGLPPGRTPIRTRLLRGGQRQEAYELIRAEVALGQRAYVVLPLVEESENLDLRSAV 668 Query: 505 ERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 L E + ++HGRM K+ +++F +G C +L++TTV+EVG+DV +AS+ Sbjct: 669 TVHQQLQEEIFPDLRVGLLHGRMPSPRKQEAINAFASGHCDVLVSTTVVEVGVDVPEASV 728 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622 ++IE+AE FGLAQLHQLRGRVGRG S C+L+ + + RL +L + DGF IAE Sbjct: 729 MVIEHAERFGLAQLHQLRGRVGRGAAASHCLLINDGK-AGQAQQRLELLVRSSDGFEIAE 787 Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DL+ R G++LG +QSG+P +A +LE AR A+ +L DPDL Sbjct: 788 MDLQLRGPGQVLGTRQSGLPDLALASLSDDGDVLEQARSLARRLLELDPDL 838 >gi|154686003|ref|YP_001421164.1| ATP-dependent DNA helicase RecG [Bacillus amyloliquefaciens FZB42] gi|154351854|gb|ABS73933.1| RecG [Bacillus amyloliquefaciens FZB42] Length = 682 Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust. Identities = 234/651 (35%), Positives = 371/651 (56%), Gaps = 28/651 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSF----QLQKRRPYKILLNDGT 98 DLL Y P + D R + E+ E VT+ G + S + + R +++L+ G Sbjct: 33 DLLNYFPYRYDDYELR-DLEEVKHEERVTVEGKVHSEPSLTYYGKKRNRLTFRVLV--GN 89 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 IT + F R LK G +T++GK K + + + N IE Sbjct: 90 YLITAVCFNRP--YLKKKLTLGSVVTISGKWDKHRQTVSVQE----LKNGPHQEDKSIEP 143 Query: 159 VYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 VYS+ ++V + ++ I EAL L + + + L + P A +H P + Sbjct: 144 VYSVKENVTVKMMRRFIKEALQHHLDSAADPLPEKLRIRYKLPDYKHALQTMHQPETRES 203 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKS 276 + AR R Y+E L Q+ + RK +++ GI + ++PFS T + Sbjct: 204 LQ---QARRRFVYEEFLLFQLKMQAFRKAEREQSKGISHVFPAEKLAAFTDSLPFSLTTA 260 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q +++I DM+ RM R+LQGDVGSGKT VA IA+ AA+ +G Q +M P ILA+Q Sbjct: 261 QTRVLREITADMTSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQ 320 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 H + + N + + ++T ++ RR+ LER+A G+ I++GTHAL QD +++ L Sbjct: 321 HADSLVSLFANEDVNIALLTSSVKGKRRRELLERLALGEIDILVGTHALIQDEVEFKALS 380 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 LVI DEQHRFGV+QR KL K P VL MTATPIPRTL +T G++D+S I E PAGRK Sbjct: 381 LVITDEQHRFGVEQRKKLKNKGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRK 440 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 I+T + + ++ ++ ++ L +G++AY ICP IEE + + ++ ++ +N L + + Sbjct: 441 QIETYWVKHDMLERILAFIEKELKQGRQAYVICPLIEESDKLDVQNAIDVYNMLSDVYRG 500 Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 ++ ++HG++ +K+ VM F C++L++TTV+EVG++V +A+I++I +A+ FGL+ Sbjct: 501 KWNVGLMHGKLHSDEKDQVMREFSANQCQVLVSTTVVEVGVNVPNATIMVIYDADRFGLS 560 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG+ S CIL+ P S+ R+ ++ T DGF ++E+DL+ R G+ Sbjct: 561 QLHQLRGRVGRGDHQSFCILMADPK-SETGKERMRIMSETNDGFELSEKDLELRGPGDFF 619 Query: 635 GIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILT-----QDPDLTSVRGQ 679 G KQSGMP+F +A +HD LE AR+DA ++++ +D + +RGQ Sbjct: 620 GKKQSGMPEFKVADM-VHDYRALETARQDAANLVSSEAFWKDDEYRMLRGQ 669 >gi|319946374|ref|ZP_08020612.1| DNA helicase RecG [Streptococcus australis ATCC 700641] gi|319747527|gb|EFV99782.1| DNA helicase RecG [Streptococcus australis ATCC 700641] Length = 671 Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust. Identities = 231/632 (36%), Positives = 373/632 (59%), Gaps = 21/632 (3%) Query: 43 DLLFYHPSSFIDRHYRPK-ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101 DLL Y P + D ++ K + ++ + ++G ++ ++ Q + ++ GE+ Sbjct: 31 DLLLYFPFRYED--FKSKNVLDLEDGEKAVVSGLVATPANVQYYGYKRNRLRFTIKQGEL 88 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161 L + L + G+ + V GK K K + + + +D ++ VY Sbjct: 89 VLAVSFFNQPYLADKIELGQTVAVFGKWDKAKGALTGMK---LLAQVEDD----LQPVYR 141 Query: 162 LPTGLSVDLFKKIIVEALSRL--PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 L G+S K+I A +L E + + L+ K S +A +H P KD E Sbjct: 142 LSQGVSQSALVKVIKTAFEAGLDQLLEENLPQILMDKYHLLSRRQAVRAMHFP---KDLE 198 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQE 278 A R+ ++ELL Q+ L +++++ + GI ++ + K + + ++PF+ T++QE Sbjct: 199 EYKQALRRVKFEELLFFQLQLQVLKEENRSVGQGIVLDWDEKKLKALQASLPFALTEAQE 258 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 ++ +IL DM M R+LQGDVGSGKT+VA +AM AAV AG QA +M P ILA+QH Sbjct: 259 KSLSEILADMRSPYHMNRLLQGDVGSGKTVVAGLAMYAAVTAGKQAALMVPTEILAEQHL 318 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + N +I+ ++TG++ A RR+ LE I GQ +++GTHAL Q+ + ++ L LV Sbjct: 319 QSLTSLFSNLRIL--LLTGSLKAAERRERLELIQTGQVDLVVGTHALIQEGVHFHDLGLV 376 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DEQHRFGV QR L +K P VL+MTATPIPRTL +T+ GD+D+S I + PAGRK I Sbjct: 377 IIDEQHRFGVAQRRILREKGQNPDVLMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKEI 436 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--S 516 T + +++ V++ L + +G +AY I P IEE + + ++ + L +F + Sbjct: 437 ITRWVKHQQLNLVLDWLVKEIEKGSQAYVISPLIEESEALDLKNAIALEEELIAYFGDRA 496 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 IA++HG+M +KE++M +FK G LL++TTVIEVG++V +A+++II +A+ FGL+QL Sbjct: 497 RIALLHGKMKGEEKEAIMQAFKQGEIDLLVSTTVIEVGVNVPNATVMIIMDADRFGLSQL 556 Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636 HQLRGRVGRG++ S +L+ +P +++ R+ ++ T +GF++AEEDLK R GEI G Sbjct: 557 HQLRGRVGRGDKQSYAVLVANPK-TESGKCRMKIMTETTNGFVLAEEDLKLRGSGEIFGT 615 Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668 +QSG+P+F +A +LE ARK A ++T Sbjct: 616 RQSGIPEFQVANLIEDYPILEEARKVAVQVVT 647 >gi|229117341|ref|ZP_04246719.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock1-3] gi|228666241|gb|EEL21705.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock1-3] Length = 682 Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust. Identities = 232/663 (34%), Positives = 374/663 (56%), Gaps = 33/663 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G + S L ++ ++ LL + P + D + ++E+ + VT Sbjct: 8 PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G + Q ++ ++ + G IT + F R K +T+TGK Sbjct: 61 VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRP--YYKQKLNLDETVTITGKW 118 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184 + + I + H+ V +E VYS+ L+V ++ I +AL S + V Sbjct: 119 DQHRQTIAVSELHF----GSVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSMVEV 174 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LP+ LL + EA +H P +D + AR R Y+E Q+ + +R Sbjct: 175 LPD----GLLNRYKLLPRYEALRALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227 Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 K + + G + Q+ + +PF T +Q + +IL+DM+ RM R+LQGDVG Sbjct: 228 KMERENSKGTKKEIPSTELQEFIDALPFPLTGAQHRVVDEILKDMTSPYRMNRLLQGDVG 287 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA I + AA A Q +M P ILA+QHY+ + + + VE++T ++ A Sbjct: 288 SGKTVVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSRFGMTVELLTSSVKGAR 347 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L R+ G+ I++GTHAL QD + +++L LVI DEQHRFGV QR L +K +P V Sbjct: 348 RREILARLEQGEVDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D V+ ++ + +G+ Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541 +AY ICP IEE ++ + ++ ++ + L H+ + ++HGR+S +KE +M F Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+ P S Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660 + R+ ++ T DGF+++E+DL+ R G+ G KQSG+P+F +A +HD LE AR Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645 Query: 661 KDA 663 +DA Sbjct: 646 QDA 648 >gi|159896821|ref|YP_001543068.1| ATP-dependent DNA helicase RecG [Herpetosiphon aurantiacus ATCC 23779] gi|159889860|gb|ABX02940.1| ATP-dependent DNA helicase RecG [Herpetosiphon aurantiacus ATCC 23779] Length = 832 Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust. Identities = 253/717 (35%), Positives = 385/717 (53%), Gaps = 66/717 (9%) Query: 8 PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67 P+ L T +G+G + +K+ DLL++ P + D R +I ++ Sbjct: 107 PIDTLLKTLQGIGPSTARSFAKL------GVHTLEDLLYHVPHRYDDFSKRKQICDLVVG 160 Query: 68 RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 T+ + SF + R+ +I + D TG + +F R T M K F EG +I ++G Sbjct: 161 ETDTVIVTVDAIKSFNAKGRQGVEITVGDDTGVLKASWF-RGTWMAKQ-FREGMRIVLSG 218 Query: 128 KIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKII---VEALSRLP 183 K+ + M +P + F V+ + V+ L GL +++I V+A++ P Sbjct: 219 KVSMFREMKSMSNPQWEPFVEDDLVHTGRLVPVHPLTKGLQDRNARQVIKRVVDAVT--P 276 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 L + + +L ++ + A + IH P + AR+RL +DE L Q+ +L Sbjct: 277 TLSDPLPIELRERAGLLPLGVAISQIHFP---DSWAMVQRARQRLGFDEFLYIQLGVLQR 333 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 ++ ++ G PI I L ++PF+ T +Q +I +D+ + M R++QGDVG Sbjct: 334 KRLYQGVQGQPIAFNQAIHDAYLSSLPFALTNAQTRTFNEICRDLERPVPMTRLVQGDVG 393 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII------------ 351 SGKT VA A+ AV AG Q +MAP ILA+QHY +KK N +I Sbjct: 394 SGKTAVAAAALVQAVAAGFQGAMMAPTEILAEQHYRGLKKLLANVKIPGRETNSNGDWRD 453 Query: 352 -------------------------------VEIITGNMPQAHRRKALERIAHGQAHIII 380 V ++TG++ RR+AL+ IA G+ III Sbjct: 454 ELDQEKRNRLAQIKQLLMLADEPEPEPGGIRVALLTGSLKARQRREALKLIADGEVDIII 513 Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440 GTHAL Q ++ Y L L +VDEQHRFGV+QR L +K PH+L+MTATPIPR+L LT Sbjct: 514 GTHALIQANVDYQALGLAVVDEQHRFGVEQREALKRKGFNPHLLVMTATPIPRSLALTIY 573 Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 GD+D+S I E+P GR+PI+T I + + ++ ++ G++A+ ICP +E EK E Sbjct: 574 GDLDVSVIDERPPGRQPIRTKWISSGERSKAYKHMRKEIAAGRQAFVICPLVEESEKLED 633 Query: 499 NFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557 ++VE+ + HE F + +IHGRM+ +K+++M F++ +L+AT V+EVGID+ Sbjct: 634 VKSAIVEQEHLQHEIFPDLKVGLIHGRMTSSEKDTIMAQFRDREFDILVATAVVEVGIDI 693 Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617 +A+ I+IE AE FGLAQLHQ RGRVGRG S C+L+ + + RLS ++ +EDG Sbjct: 694 PNATTIMIEGAERFGLAQLHQFRGRVGRGSHQSFCVLVSDKEDNDVTVARLSSMEESEDG 753 Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDL 673 F +AE DL+ R GE GI+QSG P +AQ L D+ LL AR +A+ IL DP+L Sbjct: 754 FRLAEIDLELRGPGEFFGIRQSGTPDLKVAQ--LTDTRLLHAARIEAERILKLDPEL 808 >gi|94989151|ref|YP_597252.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS9429] gi|94993043|ref|YP_601142.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS2096] gi|94542659|gb|ABF32708.1| ATP-dependent DNA helicase [Streptococcus pyogenes MGAS9429] gi|94546551|gb|ABF36598.1| ATP-dependent DNA helicase recG [Streptococcus pyogenes MGAS2096] Length = 671 Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust. Identities = 248/672 (36%), Positives = 377/672 (56%), Gaps = 32/672 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L AP+S +G G K + K+ + DLL Y+P + D + + E+ Sbjct: 3 LTAPMSNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEK 56 Query: 69 IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 V ITG + ++ Q KR L G + + FF + L + G+++ V Sbjct: 57 AV-ITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQP--YLADKIELGQEVAVF 113 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL---SRLP 183 GK K+ I + + +D P VY + G+S K I A + L Sbjct: 114 GKWDATKSAITGMK---VLAQVEDDMQP----VYRVAQGISQSTLIKAIKSAFEIDAHLE 166 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 L E + LL+K ++A +H P KD A R+ ++EL Q+ L ++ Sbjct: 167 -LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVL 222 Query: 244 RKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 + + K E G+PI + + ++PF T +Q+ ++ DIL DMS M R+LQGDV Sbjct: 223 KAENKSETNGLPILYSKHAMETKISSLPFILTNAQKRSLDDILSDMSSGAHMNRLLQGDV 282 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKT++A ++M AA AG Q+ +M P ILA+QHY +++ + I I+T M A Sbjct: 283 GSGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELFPDLSI--AILTSGMKAA 340 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 +R L IA+G +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR +K P Sbjct: 341 VKRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPD 400 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 VL+MTATPIPRTL +T+ G++D+S I E PAGRKPI T + ++ V+E +K L + Sbjct: 401 VLMMTATPIPRTLAITAFGEMDVSVIDELPAGRKPIMTRWVKHEQLGTVLEWVKGELQKD 460 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNG 540 + Y I P IEE + + ++ V L +F + +A++HGRM + +K++ M FK+ Sbjct: 461 AQVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDARMQDFKDK 520 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S +L+ +P Sbjct: 521 KSHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGYKQSYAVLVANPK- 579 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + + R++++ T DGF++AE DLK R GEI G +QSG+P+F +A +LE AR Sbjct: 580 TDSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEAR 639 Query: 661 KDAKHILTQDPD 672 K + I++ DP+ Sbjct: 640 KVSAAIVS-DPN 650 >gi|149928265|ref|ZP_01916508.1| ATP-dependent DNA helicase RecG [Limnobacter sp. MED105] gi|149822994|gb|EDM82236.1| ATP-dependent DNA helicase RecG [Limnobacter sp. MED105] Length = 703 Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust. Identities = 231/628 (36%), Positives = 342/628 (54%), Gaps = 44/628 (7%) Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITL--LFFYRKTEMLKNVFFEGRKITVT 126 + T+ G + Q R+ ++ + DG + L L FY L+ EG +I + Sbjct: 67 LATVVG-----TEVQYHPRKQLRVWVEDGDTTLLLRWLHFYPG---LQQKLSEGTRIQIN 118 Query: 127 GKIKKLKNRIIMVHPHYIFH----------------NSQDVNFPLIEAVYSLPTGLSVDL 170 G+I++ MVHP NS V P+ + L Sbjct: 119 GQIRQGYGTFEMVHPTVKIAPPGTLDASINPIAPPTNSSSVLEPVYPSTGQLKQSDWHRW 178 Query: 171 FKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHN---PRKAKDFEW-TSPARE 226 KK+ A + LP +L +K A +H P + D T PA Sbjct: 179 MKKL--PAACFIDTLP----TNLCKKHKLLPWPTALQTLHGQAKPEELYDLNLRTHPAWT 232 Query: 227 RLAYDELLAGQIALLLMRKQFKKEIGIPINVE----GKIAQKILRNIPFSPTKSQESAIK 282 R+ DELLA Q+ L R+Q E P+ E + + + +PF T +QE A + Sbjct: 233 RVKVDELLAQQLLLREYRQQRTLEKASPLKAEKITKTSLVCQFMAQLPFQLTGAQERACR 292 Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342 +I +D++ M R+LQGDVGSGKTLVA +A A+E G QA I+AP +LA QH+ + Sbjct: 293 EIFEDLAHPYPMQRLLQGDVGSGKTLVAALACLRAIENGKQAAILAPTEVLAAQHHHKLA 352 Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402 + + G M ++ + + L+ +A G+ +IIGTHAL QD +Q+ L LV+VDE Sbjct: 353 PLFDAVGVRCAKLQGAMKKSEKDRTLKALAAGEIDVIIGTHALVQDHVQFQSLALVVVDE 412 Query: 403 QHRFGVQQRLKLTQKATAPHV---LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 QHRFGV QRL L KA+ H+ L+M+ATPIPRTL T L D+ +S + EKP GRKPI Sbjct: 413 QHRFGVAQRLSLIAKASDGHLAHQLMMSATPIPRTLAQTYLSDLAVSSLDEKPPGRKPII 472 Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSI 518 T ++ + +++I ++ +++G++ YW+CP IEE + + ++ + L E T I Sbjct: 473 TKLLSQKKREQLISAIEGEINKGQQVYWVCPLIEESETLDLQAAQATYADLCEQLPTRRI 532 Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578 ++HG+ + K++ M +F G LL++TTVIEVG+DV +AS+++I+ AE FGLAQLHQ Sbjct: 533 GLLHGKQDNKLKQATMAAFSAGELDLLVSTTVIEVGVDVGNASLMVIDQAERFGLAQLHQ 592 Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638 LRGRVGRG S C+LLY PLS S RL + ++DGF +AE+DL+ R GE+LG +Q Sbjct: 593 LRGRVGRGSVQSVCVLLYGGPLSNTSKLRLKAMHESDDGFYLAEKDLEIRGPGELLGKRQ 652 Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHI 666 SG+P A P + LLE+AR A+ + Sbjct: 653 SGLPMMRYADPLVDKDLLELARTLAQQM 680 >gi|167464130|ref|ZP_02329219.1| ATP-dependent DNA helicase RecG [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384318|ref|ZP_08058016.1| ATP-dependent DNA helicase RecG-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150820|gb|EFX44257.1| ATP-dependent DNA helicase RecG-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 681 Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust. Identities = 223/632 (35%), Positives = 364/632 (57%), Gaps = 18/632 (2%) Query: 44 LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTGE 100 L+ Y P + D R +SE+ + +T+ G + Q R+ K++++ Sbjct: 34 LIAYFPFRYEDYRLR-DLSEVKDGERITVQGNLIGAPVLQRYGRKSRLSCKVVIDHFF-- 90 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160 +T ++F R LK+ G++I +TGK + ++ + + ++S ++ VY Sbjct: 91 VTAVWFNRP--FLKDKLASGKEIRLTGKWDARRKQLTVSESEFPGNDSLTGT---LQPVY 145 Query: 161 SLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 SL L+ +K+I +AL + ++ E + D +++ +A +IH P +D Sbjct: 146 SLTGSLTQKSIRKMIQQALKQFGNLIQEVLPADFVKRYQLLPRKQAVALIHQPSGLED-- 203 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQE 278 AR R+ Y+EL Q+ + + +K G+ V+ + ++++PF T SQ+ Sbjct: 204 -GKQARRRMVYEELFFFQLKMHAFKAITRKRADGLAQQVDLPKIRSFVKSLPFELTPSQK 262 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +IL DM Q M R+L+GDVG+GKT+VA A+ A V AG Q +M P ILA+QH Sbjct: 263 QVVGEILHDMQQPYTMNRLLKGDVGAGKTVVAATALYATVTAGCQGALMVPTEILAEQHK 322 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + + I ++TG+ RR+ L + G ++IGTHAL Q+ + + KL LV Sbjct: 323 KSLSRMFKPYGIETALLTGSSTDKKRREILAGVQMGLIQVLIGTHALIQEDVFFRKLGLV 382 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 + DEQHRFGV QR L +K P VL MTATPIPRTL +T+ GD+D+S + E P GRKPI Sbjct: 383 VTDEQHRFGVSQRSILRRKGMNPDVLSMTATPIPRTLAITAFGDLDVSTLREMPKGRKPI 442 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517 KT + + ++ V+ ++ + G++AY ICP IEE + + ++ ++ L +HF + Sbjct: 443 KTYWVHHDMLERVLGFIQKEAAGGRQAYVICPLIEESDKLDVQNAIDVHVQLQQHFPDLN 502 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 I ++HGRM+ +K+ M SFK+G+ ++L++TTVIEVG+DV +A+++++ +A+ FGL+QLH Sbjct: 503 IGLLHGRMTAAEKDDTMRSFKDGSIQVLVSTTVIEVGVDVPNATLMVVYDADRFGLSQLH 562 Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637 QLRGRVGRGE S C+L+ P ++ R+ + T DGF IA DL+ R G+ G K Sbjct: 563 QLRGRVGRGEHQSFCVLIADPK-TEVGKERMQAMTETTDGFEIARRDLELRGPGDFFGTK 621 Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669 QSG+P+F IA ++EIAR DA ++ + Sbjct: 622 QSGLPEFRIADLMCDFEIMEIARDDAADLVAK 653 >gi|94971548|ref|YP_593596.1| ATP-dependent DNA helicase RecG [Candidatus Koribacter versatilis Ellin345] gi|94553598|gb|ABF43522.1| ATP-dependent DNA helicase RecG [Candidatus Koribacter versatilis Ellin345] Length = 753 Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust. Identities = 239/698 (34%), Positives = 393/698 (56%), Gaps = 51/698 (7%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLL+Y P + DR I E+ + ++ + F+ + +++ + G + Sbjct: 67 DLLYYLPFRYEDRLNPRGIGELRPGEMASVVAEVRTSGLFRTRAGPMFQLTVGQGHQTLK 126 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLK---NRIIMVHPHY-IFHN----SQDVN-- 152 L+F+ LK+ F G+ + + GK+++ K + ++ P + + H+ ++D + Sbjct: 127 CLWFH--GAYLKDRFKPGQLLAMYGKVEESKFGRRELQIIQPQFEVLHDPDEPAEDADSG 184 Query: 153 ----------FPLIEAVYSLPTGLSVDLFKKIIVEALSRL------PVLP-EWIEKDLLQ 195 P+ E + L+ F+++I AL L P+ P DLL+ Sbjct: 185 KLKTLEIGRIVPIYETAGN--GKLTSKYFRRVIYGALENLTDEIPDPIPPVTRSHVDLLE 242 Query: 196 KKSFPSIAEAFNIIHNPRKAKDFEWTSPARE----RLAYDELLAGQIALLLMRKQFKKEI 251 +++ AF+ H P + + F AR RL ++EL ++ L L R++ + + Sbjct: 243 RRA------AFSKAHWPDEGESFTRLQSARSAAHIRLIFEELFFLELGLELKRRKMRAQA 296 Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 GIP V+ ++ + I R +PF PT +Q+ + +I+ DM Q + M R+LQGDVGSGKT+VA Sbjct: 297 GIPFRVDDQVREAIKRILPFHPTAAQKRVLGEIVADMKQPSPMRRLLQGDVGSGKTIVAF 356 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A A+E G Q +MAP ILA QHY ++ + + ++TG++ Q +R+ I Sbjct: 357 EAAVIAIENGYQVALMAPTEILATQHYLSARRILEGAGYRIVLLTGSVEQDRKREIRRHI 416 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTAT 429 A G A ++IGTHAL Q+ +++ L LVIVDEQHRFGV QR KL +K A P VL+MTAT Sbjct: 417 AQGNAQLVIGTHALIQEGVEFDALGLVIVDEQHRFGVMQRFKLMKKTDAAEPDVLVMTAT 476 Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489 PIPRTL LT GD+D+S + E P GR PI T + R DEV ++ ++ G +AY + Sbjct: 477 PIPRTLALTLYGDLDVSILNELPPGRTPIVTRRVSDERADEVWAFVRKQIAAGHQAYIVY 536 Query: 490 PQIEEKKES----NFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543 P IEE +++ ++ ++ ++ L ++ + + ++HGRM DK++VM F+ G + Sbjct: 537 PVIEENEDAESGKQLKAAMKMYDELRKNVFADLRVGLLHGRMDSDDKDAVMRRFQAGDVQ 596 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG+DV +A+I+++E+AE FGL+Q+HQLRGR+GRG S C+L+ +S Sbjct: 597 VLVSTTVIEVGVDVPNANIMVVEHAERFGLSQMHQLRGRIGRGSAKSFCVLMTGGKVSPE 656 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 + RL + +T DGF I+E DL+ R GE G KQ+GMP F +A LLE+A+++A Sbjct: 657 AEQRLDAMVSTNDGFQISELDLQLRGPGEFFGTKQAGMPDFRVANLLRDRELLELAKREA 716 Query: 664 KHILTQ-DPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 ++ + PDL+ +++ L + +N + + G Sbjct: 717 AYVTSGPHPDLSEAEIKNVLTHLRTH-WNRRYGLVEVG 753 >gi|256820801|ref|YP_003142080.1| ATP-dependent DNA helicase RecG [Capnocytophaga ochracea DSM 7271] gi|256582384|gb|ACU93519.1| ATP-dependent DNA helicase RecG [Capnocytophaga ochracea DSM 7271] Length = 704 Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust. Identities = 254/715 (35%), Positives = 389/715 (54%), Gaps = 40/715 (5%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 N L P++ RGVG + + L ++ + DLL P+ +IDR KI+E+ Sbjct: 5 NILHTPINYLRGVGNQRAELLKTELSI-----YEYQDLLNLFPNRYIDRTKFYKINELQN 59 Query: 67 ERI-VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKI 123 V + G I + + ++ +++ D TG + L++F + + L+ Sbjct: 60 NNAEVQLVGKIVNLRTVESAHQKGTRLVATFVDDTGTMELVWF-KGLKWLRESLKINEPY 118 Query: 124 TVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182 + GK+ M HP + + I+ VY P+ + L K+ I + R Sbjct: 119 VIFGKLNFFGGTFSMPHPEMDLLSEFKKAGHSSIQPVY--PS--TEKLAKRNITNRVMRQ 174 Query: 183 PV----------LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232 V E + ++L + S EA IH P + A RL ++E Sbjct: 175 LVQTVFEEVGNSFAENLPDNILVSMNLISKQEAMRNIHFPTNQT---LLTKASVRLKFEE 231 Query: 233 LLAGQIAL----LLMRKQFKKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287 L Q+ L LL +++F+ G P NV ++PF T +Q+ +K+I D Sbjct: 232 LFYIQVQLVRKNLLHKQKFQ---GQPFKNVGDAFMNFYNHHLPFPLTDAQKRVLKEIRAD 288 Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347 + +M R+LQGDVGSGKT+VAL+ M AV+ G QA +MAP ILA QHY+ I + + Sbjct: 289 VGSNVQMNRLLQGDVGSGKTIVALMTMLLAVDNGCQACLMAPTEILANQHYQNISELLKE 348 Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407 T + V ++TG+ R+ E++ G+ I+IGTHAL ++ +Q+ L L I+DEQHRFG Sbjct: 349 TGVTVALLTGSSKTKERKMLDEQLQSGELSILIGTHALLENKVQFRNLGLAIIDEQHRFG 408 Query: 408 VQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466 V+QR KL K T PH+L+MTATPIPRTL ++ GD+DIS I E P GRKPIKT+ N Sbjct: 409 VEQRSKLWHKNTIPPHILVMTATPIPRTLAMSVYGDLDISIIDELPPGRKPIKTLHQFEN 468 Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHG 523 E E +K + +G++AY + P IEE + +F+++ E ++ + F ++++HG Sbjct: 469 HRAETYEFIKKEIDKGRQAYVVYPLIEESEALDFKNLTEGYDYITASFPLPKYKVSMVHG 528 Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583 R+ +K++ MD F ++++ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRV Sbjct: 529 RLKPAEKDAEMDRFLRNETQIMVATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRV 588 Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643 GRG E S CILL +S ++ TR+ + T DGF IAE DLK R G+++G +QSG+ Sbjct: 589 GRGSEQSYCILLTGNKMSNDTCTRMETMVRTNDGFEIAEVDLKLRGPGDLMGTQQSGVLA 648 Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY-LYQYNEAFQFI 697 IA +L+ AR A +L DP+L + Q I LY L +Y + +I Sbjct: 649 LKIADLVKDQDILKAARFQAIDLLKADPNLELPQNQRIAHTLYQLQRYKNLWTYI 703 >gi|317504798|ref|ZP_07962756.1| DNA helicase RecG [Prevotella salivae DSM 15606] gi|315664073|gb|EFV03782.1| DNA helicase RecG [Prevotella salivae DSM 15606] Length = 700 Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust. Identities = 247/680 (36%), Positives = 385/680 (56%), Gaps = 31/680 (4%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE-RIVTITGYI 76 GVG K LSK +N + DLL Y+P ++DR I E++ V I G I Sbjct: 14 GVGPKRKEILSKELNIQT-----WRDLLEYYPYKYVDRSKIYTIDELNGSIPFVQIKGKI 68 Query: 77 SQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 F RR + +DG G + L++F R T+ + + + V GK +R Sbjct: 69 LSFEEFSNGTRRKRIVAHFSDGHGVVDLVWF-RGTQYIYKTYALNTEYIVFGKPTVFGSR 127 Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLP-----TGLSVDLFKKIIVEALSRLP------V 184 HP + +N ++ YS G++ +K+ +SRLP Sbjct: 128 YQFAHPEIEKADELQLNEMGMQPYYSTTERMKTNGITSRTIEKLTKNLISRLPKDAISET 187 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LP +I++ L S AF IH P+ + + A+ RL ++EL Q+ +L Sbjct: 188 LPVFIQRPL----HLISREAAFKGIHYPKSLDELQ---HAQVRLKFEELFYVQLNILRYA 240 Query: 245 KQFKKEI-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +++ G G+I +N +PF T +Q+ + ++ DM+ +M R+LQGDV Sbjct: 241 SDHRRKYRGYVFQRVGQIFNTFYQNNLPFDLTNAQKRVMHELRDDMASGKQMNRLLQGDV 300 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVAL+ M A++ G QA IMAP ILA+QH IK++ Q + VE++TG + Sbjct: 301 GSGKTLVALMTMLIAIDNGFQACIMAPTEILAEQHLTTIKEFLQGMDVRVELLTGIVKGK 360 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAP 421 R++ LE +A+G +I++GTHA+ +D++Q+ +L L +VDEQHRFGV QR +L K+ P Sbjct: 361 KRQEVLEALANGDINILVGTHAVIEDTVQFARLGLAVVDEQHRFGVAQRARLWAKSENPP 420 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 H+L+MTATPIPRTL +T GD+D+S I E P GRKPI+T+ N++ + ++ + + Sbjct: 421 HILVMTATPIPRTLAMTIYGDLDVSIIDELPPGRKPIQTIHKFDNQMTSLYNGIRQQIQQ 480 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540 G++ Y + P I+E ++++ + + + + SL E F SI+ +HG+M +KE M F +G Sbjct: 481 GRQVYIVFPLIKENEKNDLKDLEKGYESLLEIFPDFSISKVHGKMKPSEKEEEMRRFVSG 540 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+ + Sbjct: 541 ETQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGAKQSYCILVTSYKM 600 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIA 659 S+ + R+ ++ T DGF IAE DLK R G++ G +QSG+ L IA L+++A Sbjct: 601 SEETQKRIDIMCETNDGFRIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLVQLA 660 Query: 660 RKDAKHILTQDPDLTSVRGQ 679 R +A+ I+ DP V Q Sbjct: 661 RDEAQKIIEHDPTCQKVEYQ 680 >gi|296135161|ref|YP_003642403.1| ATP-dependent DNA helicase RecG [Thiomonas intermedia K12] gi|295795283|gb|ADG30073.1| ATP-dependent DNA helicase RecG [Thiomonas intermedia K12] Length = 719 Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust. Identities = 247/689 (35%), Positives = 373/689 (54%), Gaps = 46/689 (6%) Query: 41 FIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILL------ 94 + DL + P + D + + + IVT + + Q+Q R P + LL Sbjct: 47 YWDLALHLPLRYEDETRLTPLGALRDGEIVTTDAVVIE---TQVQGRAPRRQLLVRLQDP 103 Query: 95 NDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP 154 G +TL F+ LK G ++ V G++++ MVHP + D N P Sbjct: 104 EAGDAILTLRLFHFYPNQLKT-LQPGVRLRVHGQVRQGLFGWEMVHPTWKL---VDANAP 159 Query: 155 L---IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHN 211 L + VY G+ +K + AL RL V + + ++ L + P + + +H Sbjct: 160 LPNTLTPVYPTTAGVPQSYLRKAVAGALERL-VWRDTVPQEELTRHHLPDLPSSLRTLHA 218 Query: 212 PRKAKDFEWTS---PARERLAYDELLAGQIALLLMRKQFK--KEIGIPINVEGKIAQKIL 266 P A + PA+ RL +DELLA Q+A R Q + K +P E L Sbjct: 219 PPAAALPALEAGAHPAQRRLKFDELLAQQLAQQQARAQRQRWKAPMLPAAPEAHSLPAQL 278 Query: 267 RN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 R IPF+ T +QE + +I D++Q M R+LQGDVGSGKT+VA +A A AV +G Q Sbjct: 279 RAAIPFTLTAAQERCVAEIAADLAQTAPMHRLLQGDVGSGKTVVAALAAAQAVASGWQCA 338 Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +MAP ILA QH + + + + V ++G+ + R AL+R+A G+A +++GTHA+ Sbjct: 339 LMAPTEILAAQHARKLADWLEPLGVGVAWLSGSQTKKEREAALQRVASGEAQLVLGTHAV 398 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--------PHVLLMTATPIPRTLVL 437 Q +++ +L L IVDEQHRFGV QRL L A PH+L+M+ATPIPRTL + Sbjct: 399 IQAQVRFARLGLAIVDEQHRFGVAQRLALRDSLRAGTQGSGLQPHLLMMSATPIPRTLAM 458 Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497 GD+D+S I P GR P++T ++ +R DE+I R+ + ++G++AYW+CP +EE + Sbjct: 459 ALFGDLDVSTIDVLPPGRTPVRTSVVSTDRRDELIARVGALTAQGRQAYWVCPLVEESET 518 Query: 498 SNFRSVVERFNSLHEHFTS-------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550 + ++ V L + + ++HGRM +K + M +F G LL+ATTV Sbjct: 519 LDLQNAVATHAELSAALATRPGQGAVQVGLLHGRMKAQEKRATMQAFSAGEIGLLVATTV 578 Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610 IEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG S C+LL+ PLS + RL Sbjct: 579 IEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAQSDCVLLFTSPLSPTARERLGA 638 Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670 ++ DGF +A++DL+ R GE+LG++QSG+P A LLE AR A+ +L Sbjct: 639 MRELTDGFALAQKDLELRGPGELLGLRQSGVPGLRYADLAQDIDLLEAARDTAQRLLVAA 698 Query: 671 PDLTSVRGQSIRILLYLYQYNEAFQFIRA 699 P+ + R + R L E F ++ A Sbjct: 699 PE--AARQHAARWL------GEGFDWLSA 719 >gi|220931855|ref|YP_002508763.1| ATP-dependent DNA helicase RecG [Halothermothrix orenii H 168] gi|219993165|gb|ACL69768.1| ATP-dependent DNA helicase RecG [Halothermothrix orenii H 168] Length = 683 Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust. Identities = 245/673 (36%), Positives = 379/673 (56%), Gaps = 38/673 (5%) Query: 17 RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76 RGVG +Y+ L K+ N N + DLL+Y P ++ DR I I VT+ G I Sbjct: 13 RGVGPRYAEVLKKL----NINTVK--DLLYYFPRTYQDRSQFTPIKYIRPGYEVTVQGEI 66 Query: 77 SQHSSFQLQKRRP-YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 + +++K K + DG+ + ++F +K +G+ +GK+ + R Sbjct: 67 IKIEENKIRKGLSILKATITDGSDVLNGVWF--NQNYIKKQLKKGQTYIFSGKLNEKSFR 124 Query: 136 II---MVHPHYIFHNSQD-VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-----VLP 186 + +P + + D ++ I +Y L +G++ + II AL+ LP Sbjct: 125 FRKKEISNPVFEKVDKGDSIHTGRIVPIYPLTSGVTQKRLRTIIYNALNDYAHHLTDYLP 184 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 +I K K FP I+ + +H P + + + +R RLA++EL Q+ +L +K Sbjct: 185 GFIRK----KYKFPDISRSIWGLHFPENREHYIY---SRRRLAFEELFFLQLLVLKRKKG 237 Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 + GI EG++ +K L+ +PF T +Q+ ++I DM + M R+LQGDVGSGK Sbjct: 238 IIESRGINHKDEGEVIKKFLKLLPFRLTAAQKRVWREIKADMEKPTPMQRLLQGDVGSGK 297 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQA 362 T++A +A+ + G Q V MAP ILA+QHY + ++ T ++V ITG+ Sbjct: 298 TIIAALALIETMANGYQGVFMAPTEILAEQHYLKLKDLLEPLGYRTALLVGGITGS---- 353 Query: 363 HRRKALER-IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 +R+ +ER I + +I+GTH LFQ+ I Y+ L LV++DEQHRFGV+QR KL +K P Sbjct: 354 -QRENIERGIEEKKIDLIVGTHTLFQERINYFSLGLVVIDEQHRFGVEQRFKLEKKGDNP 412 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPRT+ LT GD+D+S I E P GR P+ T N + +K L E Sbjct: 413 DVLVMTATPIPRTMALTIYGDLDLSIIDELPPGRSPVITTWRTQNSRKRIYSFVKEKLEE 472 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKN 539 G++AY +CP IE +E S +E L + + ++ ++HG++ +K+ VM+ F+ Sbjct: 473 GRQAYVVCPVIEPSEELEVVSALEIKEKLEDKYLKGYNVGLLHGKLPPEEKKQVMEDFRQ 532 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G +L++TTV+EVG+DV +A+I+IIENA+ FGLAQLHQLRGRVGRG+ S CIL+ + P Sbjct: 533 GVIDVLVSTTVVEVGVDVPNATIMIIENADRFGLAQLHQLRGRVGRGKYQSYCILIGN-P 591 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 ++ RL V+ + DGF IA+EDLK R GE G +Q G+P +A LL++A Sbjct: 592 TTEEGKRRLKVMTSLNDGFEIADEDLKIRGPGEFFGTRQHGIPDLKVASLIKDKKLLQLA 651 Query: 660 RKDAKHILTQDPD 672 R++A +I+ D Sbjct: 652 RQEAFNIIYSTRD 664 >gi|260655186|ref|ZP_05860674.1| ATP-dependent DNA helicase RecG [Jonquetella anthropi E3_33 E1] gi|260630108|gb|EEX48302.1| ATP-dependent DNA helicase RecG [Jonquetella anthropi E3_33 E1] Length = 691 Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust. Identities = 233/673 (34%), Positives = 360/673 (53%), Gaps = 32/673 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L +PL+ +GVG + L ++ DLL++ P + DR ++ + Sbjct: 10 LRSPLTDLKGVGSARADALGRL------GLFSIEDLLYFFPRRYEDRRTLVPLASAVHDA 63 Query: 69 IVTITGYISQHSSFQLQKR--RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 + S + K+ + L+DG L+F R L+ G ++ + Sbjct: 64 QGAFRAVVLSWSRLRSPKKGVSMLRASLSDGQSVAGALWFGRPG--LERALQAGTELALW 121 Query: 127 GKIKKLKNRIIMVHPHY-IFHNSQDVN-----FPLIEAVYSLPTGLSVDLFKKIIVEALS 180 GK+ + NR+ +++P + Q+ P+ LP +L + + +S Sbjct: 122 GKVNRRGNRVELINPELEVLRGGQEPTIIGTILPIYPGTAQLPDRWLRELVSRAVDFGVS 181 Query: 181 RLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 +L LPE L+ ++ +P A +H P W + AR RLA++E L QI Sbjct: 182 QLTETLPE----SLISERGWPDAKTAVFQMHRPTSRSG--WLA-ARTRLAFEEFLWLQIG 234 Query: 240 LLLMRKQFKKEIGIPINVEG---KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 L L R KE P ++G + Q L + FS T Q A +I +D+ M + Sbjct: 235 LALRRAGSDKEARAP-RLDGLARPLRQAFLDRLGFSLTDDQRRATAEIDEDLMNPAGMNK 293 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 +LQGDVGSGKT VAL+AM AVE+G QAV+MAP +LA QH+ ++++ + ++ Sbjct: 294 LLQGDVGSGKTAVALLAMLRAVESGKQAVLMAPTQVLAFQHWMTVRRWLDPLGVKTALLA 353 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G + Q+ + + L +A G + IGTHAL Q+ + + L +V++DEQHRFGV QR L+ Sbjct: 354 GGLKQSEKEEILTGLADGTIDLAIGTHALVQEGVDFADLGVVVIDEQHRFGVLQRRTLSA 413 Query: 417 KATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 ++ PH L+MTATPIPRTL L+ GD+ +S + KPAGR PI+T + ++ +++ L Sbjct: 414 RSGGQPHRLVMTATPIPRTLALSIYGDLSLSTLRHKPAGRLPIRTSWVSESKRPDLLNWL 473 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVM 534 + + G++ YWICP IEE +E ++ RF L F + ++HGRM+ +K +VM Sbjct: 474 EEQMDGGRQVYWICPIIEESEELPVAALEARFAELKARFGAERTGMLHGRMTSDEKTAVM 533 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 + F G LL ATTVIEVG+DV +A++++IE+AE FGL+QLHQLRGRVGRG+ S C L Sbjct: 534 EDFSAGRLTLLAATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDRQSWCFL 593 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 L H S RL T+DGF IA+ D+ R GE G++Q G+ F +A Sbjct: 594 LSHA--GGPSAERLRAFCRTDDGFAIADLDMSLRGPGEFCGVRQHGITDFRVADLVRDVQ 651 Query: 655 LLEIARKDAKHIL 667 L+E A+K A+ ++ Sbjct: 652 LMEDAQKTARKMV 664 >gi|298208660|ref|YP_003716839.1| ATP-dependent DNA helicase recG [Croceibacter atlanticus HTCC2559] gi|83848583|gb|EAP86452.1| ATP-dependent DNA helicase recG [Croceibacter atlanticus HTCC2559] Length = 700 Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust. Identities = 252/691 (36%), Positives = 384/691 (55%), Gaps = 43/691 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L P+ +GVG + L ++ F DLL + P +ID+ KI+E+ Sbjct: 5 LQTPIDYLKGVGTNRADLLRTELDIHT-----FQDLLNFFPFRYIDKTKYYKINELQRNS 59 Query: 69 I-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 V + G I+ + + ++ + D TG++ L++F R + +K + G Sbjct: 60 ADVQVIGKITHIKTVEQKRGKRLVADFIDDTGKMELVWF-RGHKWIKENLKLNTAYVIYG 118 Query: 128 KIKKLKNRIIMVHPH---YIFHNSQDVNFPLIEAVYS-----LPTGLSVDLFKKIIVEAL 179 K+ M HP Y H ++V + + VYS G++ K++ + Sbjct: 119 KVNHYNGTFSMPHPEMEPYATH-KEEVKIAM-QPVYSSTEKLTNKGITQRFMGKMMQQVF 176 Query: 180 SRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 + E + L ++ S +A IH P K+ E + A+ RL ++EL Q+ Sbjct: 177 IQTGATYEETLAAPLREELKLISKTQALRNIHFP---KNSELLAKAQFRLKFEELFYIQL 233 Query: 239 ALL---LMRKQFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRM 294 +L L RKQ K G P + G++ N +PF T +Q+ IK+I D+ +M Sbjct: 234 QMLSKNLQRKQRLK--GFPFDQVGEVFNDFYENHLPFELTNAQKRVIKEIRNDLGSSAQM 291 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R+LQGDVGSGKT+VAL+ + A++ QAV+MAP ILAQQHY+ IK + I V + Sbjct: 292 NRLLQGDVGSGKTIVALMCVLLAIDNNFQAVLMAPTEILAQQHYQGIKDLVAHLDIKVNL 351 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 +TG++ ++ R E + G +++IGTHA+ +D +Q+ L L I+DEQHRFGV QR KL Sbjct: 352 LTGSVKKSARTLIHEALEDGTLNLLIGTHAVLEDKVQFKNLGLAIIDEQHRFGVAQRSKL 411 Query: 415 TQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 +K T PH+L+MTATPIPRTL ++ GD+DIS I E P GRK IKTV +R D Sbjct: 412 WRKNTIPPHILVMTATPIPRTLAMSVYGDLDISVIDELPPGRKAIKTV----HRFDS--H 465 Query: 474 RLKVV------LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGR 524 RL+V + +G++ Y + P I+E + +++ +++ + S+ F ++I+HG+ Sbjct: 466 RLRVFRFIRDEIEKGRQVYVVYPLIQESEVLDYKDLMDGYESIVRDFPLPEYQVSIVHGQ 525 Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584 M DK+ M F G +++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRVG Sbjct: 526 MKPADKDYEMQRFVEGKTHIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVG 585 Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644 RG E S CIL+ LS +S TRL + T DGF IAE DLK R G+++G +QSG+ Sbjct: 586 RGAEQSFCILMTGHKLSDDSKTRLETMTRTNDGFEIAEVDLKLRGPGDMMGTQQSGVLNL 645 Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 IA +++L++AR A IL +DP L+ Sbjct: 646 KIADIVKDNNILKLARSYAYAILKEDPSLSD 676 >gi|281421376|ref|ZP_06252375.1| ATP-dependent DNA helicase RecG [Prevotella copri DSM 18205] gi|281404448|gb|EFB35128.1| ATP-dependent DNA helicase RecG [Prevotella copri DSM 18205] Length = 698 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 237/670 (35%), Positives = 376/670 (56%), Gaps = 21/670 (3%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG K LSK + + + DLL Y+P ++DR ISE++ + V + G I Sbjct: 14 GVGPKKKEILSKELGINS-----YSDLLEYYPYKYVDRSKVFHISELNADMPFVQLKGKI 68 Query: 77 SQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 + KR + +DG G + L +YR + + + G + V GK R Sbjct: 69 LSYDEIDTGKRNKLLVAHFSDGYG-VADLIWYRGAQYIMKTYKVGTEYLVFGKPTVFNGR 127 Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-----LPVLPEWIE 190 HP + ++ ++ YSL L + +E +++ LP LPE + Sbjct: 128 FQFTHPDMDDATNLQISEMGMQPYYSLTENLRKRGYTSRSIEKMTKQLVTILPPLPETLP 187 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKK 249 ++ + S A +IH P ++ + A+ RL ++EL Q+ ++ Q +K Sbjct: 188 NHIVDRLHLVSRDAAIRMIHYPHSHQEMQ---KAQVRLKFEELFYVQLNIIRYATDQRRK 244 Query: 250 EIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 G N I ++PF T +Q+ + +I DM +M R+LQGDVGSGKTL Sbjct: 245 FRGYVFNRIADIFNGFYAHHLPFELTGAQKRVMHEIRADMCSGRQMNRLLQGDVGSGKTL 304 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VAL+ M A++ G QA +MAP ILA+QH + I + Q I VE++TG + R K L Sbjct: 305 VALMTMLIALDNGYQACMMAPTEILAEQHLQTICDFLQGMDIRVELLTGIVKGKKREKIL 364 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMT 427 +A G I++GTHA+ +D + + +L + ++DEQHRFGV QR KL K+ PH+L+MT Sbjct: 365 ADLATGDIQILVGTHAILEDPVVFRRLGVAVIDEQHRFGVAQRAKLWNKSENPPHILVMT 424 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T GD+D+S I E P GRKPI+T+ ++ + + ++ ++ G++ Y Sbjct: 425 ATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTLHKFDTQLTSLYQSIRRQINLGRQVYI 484 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 + P I+E ++S+ +++ E + +L + F ++ IHG+M +KE M+ F G ++L+ Sbjct: 485 VFPLIKESEKSDLKNLEEGYETLKQAFPEFKLSKIHGKMKSTEKEVEMEQFVKGETQILV 544 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+ + LS+ + Sbjct: 545 ATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGCDQSYCILVTNYKLSEETRK 604 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKH 665 R+ ++ +T DGF IAE DLK R G++ G +QSGM L IA L+++AR +A+ Sbjct: 605 RIDIMCDTNDGFRIAEADLKLRGPGDLEGTQQSGMAFDLKIANIARDGQLVQLARTEAQE 664 Query: 666 ILTQDPDLTS 675 I+ DP+ + Sbjct: 665 IIDNDPECNA 674 >gi|293570719|ref|ZP_06681769.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E980] gi|291609191|gb|EFF38463.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E980] Length = 678 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 234/666 (35%), Positives = 381/666 (57%), Gaps = 29/666 (4%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRPKISEI 64 + L P++ GVG+K + L+ + R I DLL Y+P + D R ++EI Sbjct: 1 MRSLDDPITMLAGVGEKRAASLASL-------GIRTIEDLLTYYPFRYEDIQER-NLNEI 52 Query: 65 SEERIVTITGYISQ---HSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 ++ VT+ G + + F +K R ++++ ++ FF + LK Sbjct: 53 QDQEKVTLKGIVVSPPVMNRFGYKKSRLQFRMMQEHDVFNVS--FFNQP--YLKEKVILS 108 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 +I V GK R + + + D P+ S+ VDL KK E + Sbjct: 109 EEIAVYGKWDA--KRKALNGMKILGSQTMDDFSPIYHVNKSIRQTTLVDLIKKGFQEYGT 166 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 ++ E + +L++K A A +H P K+ E A+ R+ ++E Q+ L Sbjct: 167 ---LIEENLPNNLVEKYRLLDRASAVRSMHFP---KNHEENHQAKRRVVFEEFFLFQMRL 220 Query: 241 LLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 ++K K E G+ I + + ++ + +PF T +Q+ +I +D+ M R+LQ Sbjct: 221 QGLKKAEKAETNGLEILYDVQKLKEFTQKLPFELTNAQKRVTNEICRDLRSPQHMQRLLQ 280 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT+VA IA+ A V AG Q +M P ILAQQH E +++ ++ V ++TG+ Sbjct: 281 GDVGSGKTVVAAIALYATVTAGFQGALMVPTEILAQQHMESLQQLFDPNEVTVALLTGST 340 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 RR+ LE++ G+ +++IGTHAL QD +++ L LVI DEQHRFGV QR L +K Sbjct: 341 KTKERRELLEKLERGEINVVIGTHALIQDGVEFQNLGLVITDEQHRFGVNQRKVLREKGW 400 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 P VL MTATPIPRTL +T+ G++D+S I E PAGR PI+T + ++D V++ + L Sbjct: 401 RPDVLFMTATPIPRTLAITAYGEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTRKEL 460 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSF 537 + G + Y ICP IEE + + ++ VE + L E F + ++HG+M + +KE +M++F Sbjct: 461 ARGHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAF 520 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 K+ ++L++TTVIEVG+++ +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ + Sbjct: 521 KDNQMQILVSTTVIEVGVNMPNATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVAN 580 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 P ++ R+ ++ T +GF+++E+DL+ R GE+ G +QSG+P+F IA ++LE Sbjct: 581 PK-NELGVERMKIMTETTNGFVLSEKDLELRGPGEVFGFRQSGLPQFAIADLVTDGNVLE 639 Query: 658 IARKDA 663 +AR++A Sbjct: 640 VAREEA 645 >gi|291545912|emb|CBL19020.1| ATP-dependent DNA helicase RecG [Ruminococcus sp. SR1/5] Length = 686 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 231/672 (34%), Positives = 374/672 (55%), Gaps = 24/672 (3%) Query: 11 APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP-KISEISEERI 69 PL +GVG+K KI T +LL Y+P ++ D + P +I+ E++ Sbjct: 5 TPLRELKGVGEKTEKLFQKI------GITTAEELLRYYPRTY-DIYEEPVEIASAEEDKT 57 Query: 70 VTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 V+I I+ + + + R ++L + D +G + + +F L+ +G + Sbjct: 58 VSIRATIA--TGIYINQIRNLQVLTTTVADASGRLPVAWF--NAPYLRGTLKKGSVFILR 113 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186 GKI + K R M HP + + ++ VY L GLS + K++ + L P+ Sbjct: 114 GKIIRKKGRPQMEHPEIFTPAAYEEIIHSMQPVYGLTKGLSNKMITKLVHQILDTRPLHG 173 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E++ +++ ++ A IH P+ ++ AR+RL +DE L +A+ L++++ Sbjct: 174 EYLPEEIRERYQLADANYAIRTIHFPKNMQEL---LTARKRLVFDEFLLFVLAIQLLKEK 230 Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 ++ ++I+ +P+ T +Q++ +I +D+S M R++QGDVGSGK Sbjct: 231 TEEAPNTFPMKPVWTTEEIIEGLPYDLTGAQKNVWHEIERDLSGHKLMSRLVQGDVGSGK 290 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV---EIITGNMPQAH 363 T++A +AM + E G Q+ +M P +LA QHYE + + I ++TG+ Sbjct: 291 TVIAFLAMVLSAENGFQSALMVPTEVLANQHYEGFLRLMEEQNIASCHPVLLTGSTTARQ 350 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 +R+ ++IA G+ ++IIGTHAL Q+ ++Y L LVI DEQHRFGV+QR LT + PHV Sbjct: 351 KREIYQKIADGEVNVIIGTHALIQEKVEYKNLGLVITDEQHRFGVRQREALTTRGNPPHV 410 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+M+ATPIPRTL + GD+DIS I E PA R PIK ++ + + ++ + G+ Sbjct: 411 LVMSATPIPRTLAIILYGDLDISIIDELPAKRLPIKNCVVGTSYRPKAYSFIEKQVQMGR 470 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGT 541 +AY ICP +EE + +V + L E I I+HG+M +K +M++F +G Sbjct: 471 QAYVICPMVEESEGLEAENVTDYARKLQEILPGEIKVEILHGKMKPKEKNRIMEAFASGE 530 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTV+EVG++V +A+++++ENAE FGLAQLHQLRGRVGRGE S CI + Sbjct: 531 IQVLVSTTVVEVGVNVPNATVMMVENAERFGLAQLHQLRGRVGRGEHQSYCIFI-QGNNE 589 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 +N+ RL +L + DGF IA EDLK R G++ GI+QSG+ +F I +L+ A + Sbjct: 590 ENTSKRLKILNESNDGFYIAGEDLKLRGPGDLFGIRQSGLMEFKIGDIYNDAGILKNASE 649 Query: 662 DAKHILTQDPDL 673 A IL D DL Sbjct: 650 AAGEILALDFDL 661 >gi|238927334|ref|ZP_04659094.1| DNA helicase RecG [Selenomonas flueggei ATCC 43531] gi|238884616|gb|EEQ48254.1| DNA helicase RecG [Selenomonas flueggei ATCC 43531] Length = 706 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 240/673 (35%), Positives = 370/673 (54%), Gaps = 46/673 (6%) Query: 1 MRPSFLN------PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID 54 MR FL L ++ RGVG + + L+++ DLL ++P ++ D Sbjct: 7 MRQPFLKGWRQCVKLTDSVNAVRGVGVRKAALLARL------GVRTVYDLLTFYPRAYED 60 Query: 55 RHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTE 111 + +I +++ T+ G I Q + Q +RR + +L + DGTG ++F ++ Sbjct: 61 QSRITRIMDLAAGTRATVLGMIQQVTERQ-TRRRGFTVLTALVGDGTGYAQAVWFNQR-- 117 Query: 112 MLKNVFFEGRKITVTGKIKKL-----KNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTG 165 LK G++I +TGK+ + V + +D L I +Y+ G Sbjct: 118 FLKGKLRTGQRILLTGKVDYAYGGGGQMAFSPVTSFVLLGAQEDAAAHLGILPIYAATEG 177 Query: 166 LSVDLFKKIIVEALSR-----LPVLPEWI--EKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 L+ +++ + L+ LPE I E L+ + + AF+ IH P KD Sbjct: 178 LTQKQLRQMTADVLAHAGEELTETLPEQIRAEYHLIGRSA------AFSQIHFP---KDT 228 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQ-FKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 E + AR RLA++EL Q LL ++KQ + E GI G + ++ +PF+ T+ Q Sbjct: 229 EELAAARRRLAFEELYLIQCGLLALKKQTAEDEEGIAHRANGALVARVRDALPFALTEDQ 288 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 E +I +DM M R++QGDVGSGKT +AL+A+ VE+G Q +MAP ILA+QH Sbjct: 289 EKVWAEISRDMEAPLPMRRLVQGDVGSGKTAIALLALVKTVESGCQGALMAPTEILARQH 348 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y+ ++++ I V ++G + + + L +A ++ ++IGTHAL Q+ + + +L L Sbjct: 349 YDGLREFLTPLGIRVGFLSGRLTKKEHAEVLSALASHESDVVIGTHALIQEGVAFDRLGL 408 Query: 398 VIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 V+ DEQHRFGV QR L +K+ P VL+MTATPIPRT+ LT GD+D+S+I P GR+ Sbjct: 409 VVTDEQHRFGVAQRSALEKKSGIVPDVLVMTATPIPRTMTLTVYGDLDVSRIEHLPPGRQ 468 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 PI+T + ++ ++ + G++AY +CP IE +ES+ S E +N L Sbjct: 469 PIRTFLRDETARAKIYAFVRREIERGRQAYVVCPLIEANEESDLPSAEEVYNELSCGSFR 528 Query: 517 SI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 I ++HGR+ DKE+VM F G KLL+ATTVIEVG++V +A+++++E+AE FGLA Sbjct: 529 GIRCGLVHGRLKASDKEAVMRGFYAGEIKLLVATTVIEVGVNVPNATVLVVEHAERFGLA 588 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG + S CIL+ RL V++ T DGF +AEEDL+ R G+ Sbjct: 589 QLHQLRGRVGRGSDASYCILI--AGRQAAGAERLRVIEETSDGFRLAEEDLRLRGPGQFF 646 Query: 635 GIKQSGMPKFLIA 647 G Q G+ IA Sbjct: 647 GAMQHGLGDLKIA 659 >gi|220917310|ref|YP_002492614.1| ATP-dependent DNA helicase RecG [Anaeromyxobacter dehalogenans 2CP-1] gi|219955164|gb|ACL65548.1| ATP-dependent DNA helicase RecG [Anaeromyxobacter dehalogenans 2CP-1] Length = 904 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 227/636 (35%), Positives = 346/636 (54%), Gaps = 11/636 (1%) Query: 49 PSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFY 107 P ++ DR +ISE+ + G +S +++ +P K+ + +G + L+FF Sbjct: 245 PRAYQDRTALRRISELRVGDEAAVLGTVSHVRVQRMRSGKPLLKVGVQEGGSALELVFFN 304 Query: 108 RKTEMLKNVFFEGRKITVTGKIKK-LKNRIIMVHPHYIFHNSQD-VNFPLIEAVYSLPTG 165 LK F G + +GK+ + R M P + D NF I VY P Sbjct: 305 PPPWRLKQ-FAAGESLLCSGKVTEGFGARRQMSQPEVEKVQAGDSANFGRIVPVYPGPAD 363 Query: 166 LSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEW 220 +K++ + L P + + ++ ++ AEA H P D E Sbjct: 364 YQHPALRKLMKRLVDELVPAAVDDVPAEIRARRGLVGRAEALREAHFPPAGTDPLHAAER 423 Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280 +PA RL ++EL Q+AL + R+ + E GI + + + +PF T +QE A Sbjct: 424 VTPAFRRLVFEELFFLQLALAMRRRGVRAEAGIAFDASPAALARAVEPLPFRLTGAQERA 483 Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340 + +I +DM+ M R+LQGDVGSGKT VA AM AV++G QA +M P ILA+QH Sbjct: 484 LAEIARDMADAEPMNRLLQGDVGSGKTAVAFAAMMLAVQSGWQAALMVPTEILAEQHART 543 Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400 + ++ + + V ++ + +R+A +A G+A I +GTHAL + ++ + +L LV+V Sbjct: 544 LSRWLEGRGVEVALVGASARGKGQREARAAVAEGRARIAVGTHALLEQAVGFERLGLVVV 603 Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460 DEQHRFGV QR L K P VL+MTATPIPRTL L GD+D SKI+E P GR P+ T Sbjct: 604 DEQHRFGVMQRASLISKGRRPDVLVMTATPIPRTLALAFYGDLDQSKISELPPGRTPVTT 663 Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIA 519 + ++ + L G++ Y + P +EE ++++ L + F I Sbjct: 664 RLFGDSQRKAAYALARGELEAGRQVYVVYPLVEESEKTDLADATTGAADLGKVFPGHEIG 723 Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579 ++HGRM +K+ VMD F+ G +L+ATTVIEVG+DV +AS++I+E+AE FGL+QLHQL Sbjct: 724 LLHGRMKPEEKQRVMDRFRAGEVHVLVATTVIEVGVDVPNASVMIVEHAERFGLSQLHQL 783 Query: 580 RGRVGRGEEISSCILLYH-PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638 RGRVGRG S C+LL H ++ RL ++ T+DGF IA DL+ R GE+LG +Q Sbjct: 784 RGRVGRGAAKSHCLLLAHFRRAGDDARERLRAMEETQDGFEIARVDLRIRGPGELLGTRQ 843 Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 SG +A +++LE AR++A ++ +D DL Sbjct: 844 SGQKLLDVADLYRDEAILEEAREEAFGLVERDGDLA 879 >gi|329116832|ref|ZP_08245549.1| ATP-dependent DNA helicase RecG [Streptococcus parauberis NCFD 2020] gi|326907237|gb|EGE54151.1| ATP-dependent DNA helicase RecG [Streptococcus parauberis NCFD 2020] Length = 671 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 249/690 (36%), Positives = 392/690 (56%), Gaps = 49/690 (7%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRPK-ISEISE 66 L +P+S +G+G K + ++ E I DLL Y+P + D ++ K + ++ + Sbjct: 3 LQSPISELKGLGPKSAEKFHQL-------EIYTIEDLLIYYPFRYED--FKSKSVFDLQD 53 Query: 67 ERIVTITGYISQHSSFQL----QKRRPYKILLNDGTGEITLL---FFYRKTEMLKNVFFE 119 +TG + ++ Q + R +KI ++ + + K E+ K V Sbjct: 54 GEKAVLTGQVVTPATVQYYGFKRNRLSFKIKQDELVIAVNFFNQPYLADKVEIDKEVAIF 113 Query: 120 GR----KITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-FPLIEAVYSLPTGLSVDLFKKI 174 G+ K +TG +K L + + P ++H Q V+ LI+A+ + +D K+ Sbjct: 114 GKWDQKKAALTG-MKFLMSLEDDLQP--VYHTVQGVSQTALIKAIKAAFDANVLDQIKE- 169 Query: 175 IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234 +P L LLQK +A +H P+ ++++ A R+ ++EL Sbjct: 170 ------NIPAL-------LLQKYKLMPRQDAIRAMHFPKDLREYKL---ALRRIKFEELF 213 Query: 235 AGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 Q+ L L++ K E G+ IN + ++ N+PF T +Q ++++IL DM + Sbjct: 214 YFQMHLQLLKVANKSESSGLAINFSQEAVNAVITNLPFPLTGAQNKSLREILADMKSGHH 273 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R+LQGDVGSGKT++A +AM AA AG Q+ +M P ILA+QHY+ + + + I Sbjct: 274 MNRLLQGDVGSGKTVIASLAMYAAYTAGFQSALMVPTEILAEQHYDSLSQLFPDLSI--A 331 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 I+ M A RR AL IA G +I+GTHAL QD++QY+ L LVI DEQHRFGV+QR Sbjct: 332 ILKSGMKVAERRTALAAIADGSVDMIVGTHALIQDAVQYHHLGLVITDEQHRFGVKQRRI 391 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 +K P VL+MTATPIPRTL +T+ G++D+S I E PAGRKPI T + +D+V+ Sbjct: 392 FREKGDNPDVLMMTATPIPRTLAITAYGEMDVSIIDELPAGRKPIVTRWVKHQELDKVLP 451 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKE 531 + +++G + Y I P IEE + + ++ V + L ++F S IA++HG+M + DK+ Sbjct: 452 WIMDEIAQGAQVYVISPLIEESEALDLKNAVALESELKDYFKESARIALMHGKMKNEDKD 511 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 ++M +FKN LL++TTVIEVG++V +A+I++I +A+ FGL+QLHQLRGRVGRG + S Sbjct: 512 AIMQAFKNKETDLLVSTTVIEVGVNVPNATIMMIMDADRFGLSQLHQLRGRVGRGHKQSY 571 Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 IL+ +P + + R+ ++ T DGF++AE DLK R GEI G +QSG+P+F A Sbjct: 572 AILVANPK-TDSGKKRMRIMTETTDGFVLAEADLKMRGSGEIFGTRQSGIPEFKTADIVE 630 Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSI 681 ++LE AR+ A I++Q R Q+I Sbjct: 631 DYNILEEARRIASEIVSQVAWQEDDRWQAI 660 >gi|15895013|ref|NP_348362.1| RecG helicase [Clostridium acetobutylicum ATCC 824] gi|15024704|gb|AAK79702.1|AE007683_1 RecG helicase [Clostridium acetobutylicum ATCC 824] gi|325509150|gb|ADZ20786.1| RecG helicase [Clostridium acetobutylicum EA 2018] Length = 678 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 238/676 (35%), Positives = 387/676 (57%), Gaps = 39/676 (5%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE-ERIVT 71 ++T +GVG K +L L+K CG +DLL Y P + + I E+ + ++++ Sbjct: 7 IATLKGVGPKTALKLNK---CGIFT---ILDLLLYFPRDYENLSLMSNILEVEDGQKVIV 60 Query: 72 ITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 + F+ + R+ KI+ +DG + ++F + +KN F T+ GKIK Sbjct: 61 KCTPLRLEKEFRSKSRKTVTKIIFSDGKTTFSGIWFNQP--YIKNKFKYNETYTIMGKIK 118 Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV---LPE 187 + KN I M +P + + S + I Y+L L F ++I E L + + +PE Sbjct: 119 RTKNEITMNNPIPVENRSS--SDEKIVPKYALSGTLKNTFFIRLIFELLQNIKIDENMPE 176 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247 WI ++K +F S+ E+ IH+PR + ++ RL + EL + +L++++ Sbjct: 177 WI----IKKNAFHSLDESLREIHSPRNMLELREST---RRLKFQELFTYSLKVLMLKEYI 229 Query: 248 KKEIGIPINVEG---KIAQKILR---NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 KK N +G KIA ++++ ++PF T++Q I++IL+D + M R++QGD Sbjct: 230 KK------NNKGFAFKIAPELIKLKESLPFKLTEAQNLVIREILKDEKRPQAMNRLVQGD 283 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VALIA+ ++ G QAV+MAP ILA+QH+E + I +E++TG++ Sbjct: 284 VGSGKTIVALIAIFNVIKNGFQAVLMAPTEILAKQHFESANTLFKEFNIRIELLTGSVTD 343 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 ++R E++ G+ +IIGTHAL +D++++ L +V+ DE HRFGV QR +L K Sbjct: 344 KNKRIIKEKLKDGEIDLIIGTHALIEDNVEFSNLGIVVTDELHRFGVMQRNRLFNKGNNI 403 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPRTL L GD+D+S I P GRK +KT+ I N + + Sbjct: 404 DVLVMTATPIPRTLALYLYGDLDVSIIDTLPPGRKEVKTLCIKKNSRQKAYNFALNEIKN 463 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKN 539 G++ Y +CP +EE ++ SV + + L + I I +HG+M+ +K ++M+ F N Sbjct: 464 GRQIYVVCPLVEENEKLELTSVEKLYEELKSSYFKGIKIEMLHGKMAPKEKNAIMERFNN 523 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 +L++TTVIEVG++V +AS++IIE+A+ FGLAQLHQLRGRVGRG+ S C+L+ Sbjct: 524 KETIVLVSTTVIEVGVNVPNASVMIIEDAQRFGLAQLHQLRGRVGRGQYQSYCMLVAEMK 583 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 +K + R+ ++ ++ DGF I+EED K R GE+ GI+QSG +++ S+L A Sbjct: 584 -NKVAERRMEIMCSSSDGFYISEEDFKLRGSGEVFGIRQSGEDGLILSDIIQDISILREA 642 Query: 660 RKDAKHIL--TQDPDL 673 AK ++ T+ D+ Sbjct: 643 NSAAKKLIISTEKSDI 658 >gi|332284439|ref|YP_004416350.1| ATP-dependent DNA helicase RecG [Pusillimonas sp. T7-7] gi|330428392|gb|AEC19726.1| ATP-dependent DNA helicase RecG [Pusillimonas sp. T7-7] Length = 699 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 232/641 (36%), Positives = 358/641 (55%), Gaps = 28/641 (4%) Query: 17 RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76 + G SL K+ + G + F+ + P + D I+ + + G + Sbjct: 19 QAAGAGSSLIERKLRHLGLHQPSDFV---VHLPLRYEDETQITPIASVQPGAAAQVEGDV 75 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 + S Q + RR ++ D TG++ L + + K V G++I V G+++ Sbjct: 76 IR-SEVQFRPRRQLHAIIQDDTGQLALRWLHFYPNQQKQVE-AGKRIRVRGEVRNGFGGY 133 Query: 137 IMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193 MVHP PL +A +Y GL +K I AL + L + + +L Sbjct: 134 EMVHPKV-----STAGMPLPQALTPIYPTTDGLPQTSLRKAIDAALG-VADLSDSLPVEL 187 Query: 194 LQKKSFPSIAEAFNIIHNPRK----AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249 Q+ S A+A ++H+P A E PA R+ +DELLA Q++L R ++ Sbjct: 188 CQRYGLISFADAIRVLHHPPANVSYADLIEREHPAWVRIKFDELLAQQLSLAAARAARRR 247 Query: 250 EIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 + ++ +G + Q++ +++PF+ T +Q I +I QD+ + M R+LQGDVGSGKT+ Sbjct: 248 QRAPALSAAQGNLPQQLKQSLPFTLTGAQTRVIAEISQDLLRTFPMHRLLQGDVGSGKTI 307 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VA A A A+ +G Q IMAP ILA+QH+ ++ + + + + + G++ R+ A Sbjct: 308 VAAFAAAQAIASGCQVAIMAPTEILAEQHFHKLRAWLEPLGVRLAWLAGSLTGKQRKAAF 367 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK--------ATA 420 + +A QA +++GT AL Q+ + + L L+I+DEQHRFGV QRL+L++K A Sbjct: 368 DAVASSQAQLVVGTTALIQEKVIFDNLGLIILDEQHRFGVGQRLELSRKGEDSLGGQALM 427 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 PH L M+ATPIPRTL +T D+D+S I E P GR P+ T +I NR DEV+ + + Sbjct: 428 PHQLNMSATPIPRTLAMTFFADLDVSAIDELPPGRSPVLTKLIADNRRDEVLGSVMTEVR 487 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539 +G++AYW+CP +EE + ++ V+ L + + +IHG+++ +K+ VM F+ Sbjct: 488 QGRQAYWVCPLVEESEALQLQTAVDTHARLVQALPDMRVGLIHGKLATSEKQEVMQEFRA 547 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G LL+ATTVIEVG+DV +AS++IIE+AE FGLAQLHQLRGRVGRG S C+L+Y P Sbjct: 548 GRIDLLVATTVIEVGVDVPNASLMIIEHAERFGLAQLHQLRGRVGRGSRQSICVLMYQAP 607 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 LS + RL + T DGF IA DL+ R GE LG++QSG Sbjct: 608 LSAIARQRLRAMYETADGFEIARRDLELRGPGEFLGVRQSG 648 >gi|157692267|ref|YP_001486729.1| ATP-dependent DNA helicase RecG [Bacillus pumilus SAFR-032] gi|157681025|gb|ABV62169.1| DNA helicase RecG [Bacillus pumilus SAFR-032] Length = 682 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 243/652 (37%), Positives = 374/652 (57%), Gaps = 23/652 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS----SFQLQKRRPYKILLNDGT 98 DLL Y P + D R + E+ + VT+ G + HS ++ +KR L G Sbjct: 33 DLLGYFPYRYDDYELR-NLEEVKHDERVTVEGKV--HSEPVLTYYGKKRSRLTFRLLVGR 89 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 IT + F R LK G ++VTGK K + IMV + QD + IE+ Sbjct: 90 FLITAICFNRP--YLKRSLVLGDTVSVTGKWDK-NRQSIMVQEFKKGTHEQDGS---IES 143 Query: 159 VYSLPTGLSVDLFKKIIVEALS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 VYS+ ++V + ++ + +ALS + + + K L+ S EA IH P Sbjct: 144 VYSVKENVTVKMMRRFVKQALSLYVDKAEDQLPKQLVSTYKLMSYQEALKTIHLPETRDS 203 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKS 276 + AR R Y+E L Q+ + +RK+ + K GI + + + ++PF TK+ Sbjct: 204 LK---QARRRFVYEEFLIFQLKMQAIRKKEREKTSGIQHPFSKEAVFEFVHSLPFPLTKA 260 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q + +I+ DM+ RM R+LQGDVGSGKT VA IA+ AA +G Q +M P ILA+Q Sbjct: 261 QSRVLDEIMSDMASPYRMNRLLQGDVGSGKTAVAAIALYAAHLSGYQGALMVPTEILAEQ 320 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 H + + + + + + ++T ++ RR+ LER+ G+ I++GTHAL QD +++ +L Sbjct: 321 HADSLYQLFEKWGLNIALLTSSVKGKRRRELLERLKEGEIDILVGTHALIQDEVEFQQLG 380 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 LVI DEQHRFGV+QR KL K P VL MTATPIPRTL +T G++D+S I E PAGRK Sbjct: 381 LVITDEQHRFGVEQRKKLRSKGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDELPAGRK 440 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 I+T + + ++ ++ + L +G++AY ICP IEE + + ++ ++ + L E + Sbjct: 441 QIETYWVKHDMLERILAFVDKELKKGRQAYIICPLIEESDKLDVQNAIDVHSMLTEAYRG 500 Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 SI ++HG+++ +K+ VM F ++L++TTV+EVG++V +A+I++I +A+ FGL+ Sbjct: 501 KWSIGLMHGKLASDEKDQVMRDFTANEVQILVSTTVVEVGVNVPNATIMVIYDADRFGLS 560 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRGE S CIL+ P S+ R+ ++ T DGF ++E+DL+ R G+ Sbjct: 561 QLHQLRGRVGRGEHQSFCILMADPK-SETGKERMRIMSETTDGFELSEKDLELRGPGDFF 619 Query: 635 GIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685 G KQSGMP+F +A +HD LE ARKDA ++ D T + +R L Sbjct: 620 GKKQSGMPEFKVADM-VHDYRALETARKDAAELVQSDAFWTDPEYKELRQTL 670 >gi|229098324|ref|ZP_04229271.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock3-29] gi|228685222|gb|EEL39153.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock3-29] Length = 682 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 232/663 (34%), Positives = 374/663 (56%), Gaps = 33/663 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G + S L ++ ++ LL + P + D + ++E+ + VT Sbjct: 8 PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G + Q ++ ++ + G IT + F R K +T+TGK Sbjct: 61 VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRP--YYKQKLNLDETVTITGKW 118 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184 + + I + H+ V +E VYS+ L+V ++ I +AL S + V Sbjct: 119 DQHRQTIAVSELHF----GSVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LP+ LL + EA +H P +D + AR R Y+E Q+ + +R Sbjct: 175 LPD----GLLNRYKLLPRYEALRALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227 Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 K + + G + Q+ + +PF T +Q + +IL+DM+ RM R+LQGDVG Sbjct: 228 KMERENSKGTKKEIPSTELQEFIDALPFPLTGAQRRVVDEILKDMTSPYRMNRLLQGDVG 287 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA I + AA A Q +M P ILA+QHY+ + + + VE++T ++ A Sbjct: 288 SGKTVVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSRFGMTVELLTSSVKGAR 347 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L R+ G+ I++GTHAL QD + +++L LVI DEQHRFGV QR L +K +P V Sbjct: 348 RREILARLEQGEVDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D V+ ++ + +G+ Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541 +AY ICP IEE ++ + ++ ++ + L H+ + ++HGR+S +KE +M F Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+ P S Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660 + R+ ++ T DGF+++E+DL+ R G+ G KQSG+P+F +A +HD LE AR Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645 Query: 661 KDA 663 +DA Sbjct: 646 QDA 648 >gi|90961599|ref|YP_535515.1| ATP-dependent DNA helicase [Lactobacillus salivarius UCC118] gi|90820793|gb|ABD99432.1| ATP-dependent DNA helicase [Lactobacillus salivarius UCC118] Length = 676 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 239/668 (35%), Positives = 380/668 (56%), Gaps = 40/668 (5%) Query: 13 LSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 + RGVG K L+K+ +N DLL ++P + D + + EI+ + VT Sbjct: 7 VGVLRGVGPKKIQALNKLGVNT-------IEDLLTFYPFRYNDIAVK-NLEEINSQEKVT 58 Query: 72 ITGYISQHS---SFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 + G ++ F +K R +K+L+N +T F+ + + K V G+++ V G Sbjct: 59 LKGIVASEPVLVRFGRKKSRLNFKLLINHDVIGVT---FFNQPWISKQVT-TGQELAVYG 114 Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL----- 182 K L+ + + I + D VY + + K+++ +A Sbjct: 115 KYDALRQSLSGIK--IISRKTND-----FVGVYRSSKDIKESIIKQLVKQAYDEYNSYIK 167 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 V+PE I K + + + IH P K+ + AR +DE + + L L Sbjct: 168 DVVPESIRI----KYRLENRKQMIHDIHFPSTKKEADL---ARRSAIFDEFFSFEAGLQL 220 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +++ K +G+ I + ++ ++ +PF TK+Q+ + +I DM N M R+LQGDV Sbjct: 221 LKRDNHKNMGLRIKYNNEKLKEFIKGLPFELTKAQKRVVNEICADMLSPNHMNRLLQGDV 280 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ- 361 GSGKT++A IAM A V AG QAV+MAP ILAQQH E + + I V ++T + Sbjct: 281 GSGKTIIAAIAMYATVTAGFQAVLMAPTEILAQQHAEKLANLFEQYGISVALMTSSSLSR 340 Query: 362 -AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 +R+ L+ + +G I+IGTHA+ QD+I+++ L L I DEQHRFGV QR L +K Sbjct: 341 VKVKRELLKHLKNGDIDIVIGTHAVIQDNIEFHNLGLAITDEQHRFGVNQRRILRKKGVN 400 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 P +L MTATPIPRTL +T+ G++D+S I E P GR+P+KT + ++ V E +K L Sbjct: 401 PEILAMTATPIPRTLAITTYGEMDVSIIDELPKGRQPVKTSWVKKKQVKNVFEFVKRQLE 460 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKN 539 G +AY I P +EE + + ++ E F E+F S +A++HG+M +KE M +FKN Sbjct: 461 LGTQAYIISPLVEESELLDLQNAEEVFEKAKEYFGSEKVALLHGKMDANEKEQAMQAFKN 520 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 +L++TTVIEVG+DV +A+++II +A+ FGLAQLHQLRGRVGRG + S CIL+ P Sbjct: 521 KEVSILVSTTVIEVGVDVPNATVMIILDADRFGLAQLHQLRGRVGRGSKESYCILVADPK 580 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 S+ R+ ++ T DGFLI+++DL+ R GE+LG KQSG+P+F + P ++ ++L++A Sbjct: 581 -SEYGKERMKIMTETNDGFLISQKDLELRGPGEVLGKKQSGLPEFKVGDPVVNLNILQVA 639 Query: 660 RKDAKHIL 667 +++A +++ Sbjct: 640 QEEAHNVV 647 >gi|294339213|emb|CAZ87567.1| ATP-dependent DNA helicase recG [Thiomonas sp. 3As] Length = 719 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 246/687 (35%), Positives = 372/687 (54%), Gaps = 46/687 (6%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILL------ND 96 D+ + P + D + + + +VT ++Q Q+Q R P + LL Sbjct: 49 DIALHLPLRYEDETRLTPLGALRDGELVTTDAVVTQ---AQVQGRAPRRQLLVRLQDPEA 105 Query: 97 GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL- 155 G +TL F+ LK G ++ V G++++ MVHP + D N PL Sbjct: 106 GDAVLTLRLFHFYPNQLKT-LQPGVRLRVHGQVRQGLFGWEMVHPTWKL---VDANAPLP 161 Query: 156 --IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213 + VY G+ +K + AL RL V + + ++ L + P + + +H P Sbjct: 162 NTLTPVYPTTAGVPQSYLRKAVAGALERL-VWRDTVPQEELTRHHLPDLPSSLRTLHAPP 220 Query: 214 KAKDFEWTS---PARERLAYDELLAGQIALLLMRKQFK--KEIGIPINVEGKIAQKILRN 268 A + PA+ RL +DELLA Q+A R Q + K +P LR Sbjct: 221 AAALPALEAGAHPAQRRLKFDELLAQQLAQQQARAQRQRWKAPTLPAAPGAHSLPAQLRA 280 Query: 269 -IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 IPF+ T +QE + +I D++Q M R+LQGDVGSGKT+VA +A A AV +G Q +M Sbjct: 281 AIPFTLTAAQERCVAEIAADLAQTAPMHRLLQGDVGSGKTVVAALAAAQAVASGWQCALM 340 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 AP ILA QH + + + + V ++G+ + R AL+R+A GQA +++GTHA+ Q Sbjct: 341 APTEILAAQHARKLADWLEPLGVGVAWLSGSQTKKEREAALQRVASGQAQLVLGTHAVIQ 400 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--------PHVLLMTATPIPRTLVLTS 439 +++ +L L IVDEQHRFGV QRL L A PH+L+M+ATPIPRTL + Sbjct: 401 AQVRFARLGLAIVDEQHRFGVAQRLALRDSLRAGTQGSGLQPHLLMMSATPIPRTLAMAL 460 Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499 GD+D+S I P GR P++T ++ +R DE+I R+ + ++G++AYW+CP +EE + + Sbjct: 461 FGDLDVSTIDVLPPGRTPVRTSVVSTDRRDELIARVGALTAQGRQAYWVCPLVEESETLD 520 Query: 500 FRSVVERFNSLHEHFTS-------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552 ++ V L + + ++HGRM +K + M +F G LL+ATTVIE Sbjct: 521 LQNAVATHAELSAALATRSGQGAVQVGLLHGRMKAQEKRATMQAFSAGEIGLLVATTVIE 580 Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612 VG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG S C+LL+ PLS + RL ++ Sbjct: 581 VGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAQSDCVLLFTSPLSPTARERLGAMR 640 Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 DGF +A++DL+ R GE+LG++QSG+P A LLE AR A+ +L P+ Sbjct: 641 ELTDGFALAQKDLELRGPGELLGLRQSGVPGLRYADLAQDIDLLEAARDTAQRLLVAAPE 700 Query: 673 LTSVRGQSIRILLYLYQYNEAFQFIRA 699 + R + R L E F ++ A Sbjct: 701 --AARQHAARWL------GEGFDWLSA 719 >gi|221064802|ref|ZP_03540907.1| ATP-dependent DNA helicase RecG [Comamonas testosteroni KF-1] gi|220709825|gb|EED65193.1| ATP-dependent DNA helicase RecG [Comamonas testosteroni KF-1] Length = 731 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 235/670 (35%), Positives = 360/670 (53%), Gaps = 41/670 (6%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL + P + D + + V I ++ HS QL+ RR K+ ++DG+ Sbjct: 54 TRDIDLALHLPLRYEDETRIVPLKNARDGETVQIEATVT-HSEVQLRPRRMLKVTVDDGS 112 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--DVNFPLI 156 L FF K + G ++ + G++K M+HP + + P+ Sbjct: 113 STCVLTFFSFYPSQQKTMA-PGARLRIRGEVKGGFWGRQMMHPAFRVAGGELPTALTPVY 171 Query: 157 EAVYSLPTG-----LSVDLFKKIIVEAL--SRLPVLPEWIEKDLLQKKSFPSIAEAFNII 209 A SLP ++ L + + E L + P + ++ +D LQ + A + Sbjct: 172 PASASLPQAYLRRAIASALLRADLSETLPPEQSPPIAQFYGQDGLQPAY--DLRNALTFL 229 Query: 210 HNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM---RKQFKKEIGIPINVEGKIA 262 H+P + + PA +RL +ELLA Q++ R + + + P + Sbjct: 230 HHPTPDVALVTLEDHSHPAWQRLKAEELLAQQLSQYEAKRERARLRAPVLRPQAGMADLT 289 Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ L +PF T +Q+ + +I DM ++ M R+LQGDVGSGKT+VA ++ A +EAG Sbjct: 290 QQFLAQLPFGLTGAQQRVVGEIRADMERRIPMHRLLQGDVGSGKTVVAALSAVACIEAGW 349 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQII----VEIITGNMPQAHRRKALERIAHGQAHI 378 Q +MAP ILA+QH+ + + + V + G + R L + G+A + Sbjct: 350 QCALMAPTEILAEQHFGKLVGWLEPILAPLGKKVAWLAGAQKKKERAAMLALVESGEAAL 409 Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRT 434 ++GTHA+ Q+ +Q+ L L ++DEQHRFGV QRL L QK A PH+L+M+ATPIPRT Sbjct: 410 VVGTHAVIQEQVQFKNLALAVIDEQHRFGVAQRLALRQKLAATGMEPHLLMMSATPIPRT 469 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I E P GR PI T +I +R DEVIER+ ++ G++ YW+CP IEE Sbjct: 470 LAMSYYADLDVSTIDELPPGRTPIVTKLISDSRKDEVIERIGAQVASGRQVYWVCPLIEE 529 Query: 495 KKESNFRSVVERFNSLHEHFTSS-----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549 + + + + HE+ + + + ++H RM +K++VM+ F G +L++TT Sbjct: 530 SEALDLSNA----TATHEYLSETLPGVMVGLLHSRMPTAEKKAVMELFSAGVMGVLVSTT 585 Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY----HPPLSKNSY 605 VIEVG+DV +AS+++IE++E FGL+QLHQLRGRVGRG S+C+LLY + LS Sbjct: 586 VIEVGVDVPNASLMVIEHSERFGLSQLHQLRGRVGRGAAASACVLLYSVNDNGRLSDTGK 645 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665 RL + T DGF IA DL+ R GE LG +QSG P A E LL+ AR+ A Sbjct: 646 ERLRAMAETNDGFEIARRDLEIRGPGEFLGARQSGAPMLRFADLEQDVLLLDWARELAPL 705 Query: 666 ILTQDPDLTS 675 +L Q P L + Sbjct: 706 MLEQFPALAA 715 >gi|149183210|ref|ZP_01861656.1| ATP-dependent DNA helicase [Bacillus sp. SG-1] gi|148849075|gb|EDL63279.1| ATP-dependent DNA helicase [Bacillus sp. SG-1] Length = 682 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 245/683 (35%), Positives = 384/683 (56%), Gaps = 29/683 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEISEERIV 70 P++ +G+G + +L L+ + N + E L+ Y P + D YR K ++E E V Sbjct: 8 PVTEIKGIGDETALQLASM-NVQSVGE-----LIEYVPYRYED--YRLKDLAEAENEERV 59 Query: 71 TITGYISQHSS--FQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 T+ G I S F +K+ + L G+ I FF LK ITVTGK Sbjct: 60 TVEGKIHSAPSLMFYGRKKSRLNVRLLAGSYLIQATFF--NQPYLKKKLNLQDTITVTGK 117 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPE 187 K +II V + + ++ +F E VYSL + +K I A + E Sbjct: 118 WDK-NRQIITVQQYSLGPHTAKGDF---EPVYSLKGSIKNQSLRKYIRTAFEHYGNEIHE 173 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247 I L + + EA +H P + AR R+ Y+E L Q+ + +RK F Sbjct: 174 PIPGSLRTEYKLLNRKEALFNLHFPSSPNSLKH---ARRRMVYEEFLLFQLKMQALRK-F 229 Query: 248 KKE--IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 ++E GI N + + ++ + ++PF T +Q+ + +I DM RM R+LQGDVGSG Sbjct: 230 EREHSNGISQNYDLQKVKEFINSLPFPLTDAQKRVVNEISADMKSPYRMNRLLQGDVGSG 289 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA IA+ +++ AG Q +M P ILA+QH E + + I ++T ++ R+ Sbjct: 290 KTVVAAIALFSSITAGYQGALMVPTEILAEQHAESLSELLAPAGINTALLTSSVKGKRRK 349 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 L+++A G+ ++IGTHAL QD + + L +VI DEQHRFGVQQR L +K +P VL Sbjct: 350 LLLQKLADGEIDVLIGTHALIQDEVNFKNLGMVITDEQHRFGVQQRRVLREKGESPDVLF 409 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T G++D+S I E PAGRK I+T ++++ V++ ++ LS+G++A Sbjct: 410 MTATPIPRTLAITVFGEMDVSIIDEMPAGRKTIETYWAKQDKLERVLDFMEKELSQGRQA 469 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y ICP IEE + + ++ ++ L +F + ++HGR+ +K+ VM +F + Sbjct: 470 YVICPLIEESDKLDVQNAIDVHAQLEFYFQDRYKVGLMHGRLHSDEKDEVMKAFSRNEIQ 529 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S CILL P Sbjct: 530 VLVSTTVVEVGVNVPNATMMVIYDAERFGLSQLHQLRGRVGRGSEQSYCILLADPKTDVG 589 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKD 662 R+ ++ T DGF ++E+DL+ R G+ G KQSG+P+F +A +HD LE+AR D Sbjct: 590 K-ERMRIMAETNDGFELSEKDLELRGPGDFFGKKQSGLPEFKVADM-IHDYRALEVARND 647 Query: 663 AKHILTQDPDLTSVRGQSIRILL 685 A+ ++ D + +++R L Sbjct: 648 AQRLIQSDEFWHASEYEALRRFL 670 >gi|145629154|ref|ZP_01784953.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae 22.1-21] gi|144978657|gb|EDJ88380.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae 22.1-21] Length = 569 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 217/550 (39%), Positives = 332/550 (60%), Gaps = 18/550 (3%) Query: 140 HPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK 197 HP Y + N+ V + +YS GL + +K+ +AL+ +L + ++L + Sbjct: 6 HPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQALA---LLDKVQIAEILPNE 62 Query: 198 SFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKE 250 P S+ EA ++H P E PA++RL ++ELLA +A+ +R ++ Sbjct: 63 FNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQKVRLGTQQF 122 Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310 +P++ + + Q+ L +PF PT +Q+ + DI QD+ + M+R++QGDVGSGKTLVA Sbjct: 123 SALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDVGSGKTLVA 182 Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370 +A A++ G Q +MAP ILA+QH +++ + I V + G + R+ LE+ Sbjct: 183 ALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGKSRQAELEK 242 Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLM 426 I G +++GTHALFQ+ +++ L LVI+DEQHRFGV QRL L +K PH L+M Sbjct: 243 IKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRLMLREKGEKAGFYPHQLIM 302 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VVLSEGKKA 485 TATPIPRTL +T D+D S I E P GR PI TV++ R E++ R+K ++E ++A Sbjct: 303 TATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRAEIVMRVKNACVNEKRQA 362 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKL 544 YW+C I+E + ++ + L + +I ++HGRM +K+ VM FKN L Sbjct: 363 YWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMRFKNAELDL 422 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 L+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S C+L+Y PPL K S Sbjct: 423 LVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYKPPLGKVS 482 Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 RL VL++++DGF+I+E+DL+ R GE+LG KQ+G+ + +A ++ + AK Sbjct: 483 QKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRVANLMRDRKMIPTVQHYAK 542 Query: 665 HILTQDPDLT 674 ++ + PD+ Sbjct: 543 LLIQKYPDVA 552 >gi|212691804|ref|ZP_03299932.1| hypothetical protein BACDOR_01299 [Bacteroides dorei DSM 17855] gi|237708604|ref|ZP_04539085.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 9_1_42FAA] gi|237724128|ref|ZP_04554609.1| ATP-dependent DNA helicase RecG [Bacteroides sp. D4] gi|265755202|ref|ZP_06089972.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_1_33FAA] gi|212665705|gb|EEB26277.1| hypothetical protein BACDOR_01299 [Bacteroides dorei DSM 17855] gi|229437588|gb|EEO47665.1| ATP-dependent DNA helicase RecG [Bacteroides dorei 5_1_36/D4] gi|229457304|gb|EEO63025.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 9_1_42FAA] gi|263234344|gb|EEZ19934.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_1_33FAA] Length = 698 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 245/671 (36%), Positives = 382/671 (56%), Gaps = 21/671 (3%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITG 74 +GVG + + L+K +N + + DLL+Y P ++DR I EI + + G Sbjct: 12 LQGVGPQRATVLNKELNLFSLH-----DLLYYFPYKYVDRSRLYYIHEIDGNMPYIQLKG 66 Query: 75 YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134 I +F ++R +DGTG I L++F +L++ + + V GK Sbjct: 67 EILSFETFGEGRQRRLVGHFSDGTGIIDLVWFQGIKYLLEH-YKTKTEYIVFGKPTVFNG 125 Query: 135 RIIMVHPHYIFHNSQDVNFPLIEAVYS----LPTG-LSVDLFKKIIVEALSRL-PVLPEW 188 RI + HP ++ ++ Y+ + G L+ ++++ AL+ L L E Sbjct: 126 RINVAHPDMDPSGELTLSTMGLQPYYNTTERMKRGFLNSHGLERLMKNALALLQEPLAET 185 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248 + L+++ S+ EA IH P K+ E A+ RL ++EL Q+ +L K + Sbjct: 186 LPPQLVEEHHLMSLDEAIRNIHFP---KNPELLRKAQYRLKFEELFYVQLNILRYSKDRQ 242 Query: 249 KEI-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 ++ G+ G+I +N+PF T +Q+ IK+I +DM +M R+LQGDVGSGK Sbjct: 243 RKYRGLRFERVGEIFNTFYSQNLPFELTGAQKRVIKEIRKDMGSGRQMNRLLQGDVGSGK 302 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366 TLVAL++M A++ G QA +MAP ILA QHYE I+K+ + VE++ G++ R K Sbjct: 303 TLVALMSMLIALDNGYQACMMAPTEILAAQHYETIRKFLFGMDVRVELLMGSVKGKKREK 362 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLL 425 L + G I+IGTHA+ +D++ + L +V++DEQHRFGV QR KL K PHVL+ Sbjct: 363 ILRDLLTGDVQILIGTHAVLEDTVGFSSLGMVVIDEQHRFGVAQRAKLWSKNVCPPHVLV 422 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T GD+D+S I E P GRKPI+T+ NR + ++ + EG++ Sbjct: 423 MTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTIHQFDNRRASLYASIRKQIEEGRQI 482 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544 Y + P I+E ++ + +++ E + + F ++ +HG+M +K++ M F +G ++ Sbjct: 483 YIVYPLIKESEKMDIKNLEEGYELICAEFPDCQVSKVHGKMKPAEKDAEMQRFVSGDTQI 542 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 ++ATTVIEVG++V +AS+++IENAE FGL+QLHQLRGRVGRG + S CIL+ L++ + Sbjct: 543 MVATTVIEVGVNVPNASVMVIENAERFGLSQLHQLRGRVGRGADQSYCILVTTYKLTEET 602 Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDA 663 RL ++ T DGF IAE DLK R G++ G +QSG+ L IA LL+ R A Sbjct: 603 RKRLEIMVQTNDGFEIAEADLKLRGPGDLEGTQQSGVAFDLKIADIARDGQLLQYVRDVA 662 Query: 664 KHILTQDPDLT 674 I+ +DP T Sbjct: 663 NRIVDEDPTGT 673 >gi|194015058|ref|ZP_03053675.1| ATP-dependent DNA helicase RecG [Bacillus pumilus ATCC 7061] gi|194014084|gb|EDW23649.1| ATP-dependent DNA helicase RecG [Bacillus pumilus ATCC 7061] Length = 682 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 243/652 (37%), Positives = 372/652 (57%), Gaps = 23/652 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS----SFQLQKRRPYKILLNDGT 98 DLL Y P + D R + E+ + VT+ G + HS ++ +KR L G Sbjct: 33 DLLGYFPYRYDDYELR-NLEEVKHDERVTVEGKV--HSEPVLTYYGKKRSRLTFRLLVGR 89 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 IT + F R LK G ++VTGK K + IMV + QD + IE Sbjct: 90 FLITAICFNRP--YLKRSLVLGDTVSVTGKWDK-NRQSIMVQEFKKGTHEQDGS---IEP 143 Query: 159 VYSLPTGLSVDLFKKIIVEALS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 VYS+ ++V + ++ + +ALS + + + K L+ S EA IH P Sbjct: 144 VYSVKENVTVKMMRRFVKQALSLYVDKAEDPLPKQLVSTYKLMSYQEALKTIHLPETRDS 203 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKS 276 + AR R Y+E L Q+ + +RK+ + K GI + + ++PF TK+ Sbjct: 204 LK---QARRRFVYEEFLIFQLKMQAIRKKEREKTSGIQHPFSKDAVFEFVHSLPFPLTKA 260 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q + +I+ DM+ RM R+LQGDVGSGKT VA IA+ AA +G Q +M P ILA+Q Sbjct: 261 QSRVLDEIMSDMASPYRMNRLLQGDVGSGKTAVAAIALYAAHLSGYQGALMVPTEILAEQ 320 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 H + + + + + + ++T ++ RR+ LER+ G+ I++GTHAL QD +++ +L Sbjct: 321 HADSLYQLFEKWGLNIALLTSSVKGKRRRELLERLKEGEIDILVGTHALIQDEVEFQQLG 380 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 LVI DEQHRFGV+QR KL K P VL MTATPIPRTL +T G++D+S I E PAGRK Sbjct: 381 LVITDEQHRFGVEQRKKLRSKGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDELPAGRK 440 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 I+T + + +D ++ + L +G++AY ICP IEE + + ++ ++ + L E + Sbjct: 441 QIETYWVKHDMLDRILAFVDKELKKGRQAYIICPLIEESDKLDVQNAIDVHSMLTEAYRG 500 Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 SI ++HG+++ +K+ VM F ++L++TTV+EVG++V +A+I++I +A+ FGL+ Sbjct: 501 KWSIGLMHGKLASDEKDQVMRDFTANEVQILVSTTVVEVGVNVPNATIMVIYDADRFGLS 560 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRGE S C+L+ P S+ R+ ++ T DGF ++E+DL+ R G+ Sbjct: 561 QLHQLRGRVGRGEHQSFCVLMADPK-SETGKERMRIMSETTDGFELSEKDLELRGPGDFF 619 Query: 635 GIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685 G KQSGMP+F +A +HD LE ARKDA ++ D T + +R L Sbjct: 620 GKKQSGMPEFKVADM-VHDYRALETARKDAAELVQSDAFWTDSEYKELRQTL 670 >gi|146300684|ref|YP_001195275.1| ATP-dependent DNA helicase RecG [Flavobacterium johnsoniae UW101] gi|146155102|gb|ABQ05956.1| ATP-dependent DNA helicase RecG [Flavobacterium johnsoniae UW101] Length = 702 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 251/691 (36%), Positives = 388/691 (56%), Gaps = 42/691 (6%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 N L P+ +GVG L K + ++ DL+ ++P+ +IDR KI+E+ Sbjct: 4 NLLETPIEYLKGVGPSRGQLLRKELGI-----HKYGDLVNFYPNRYIDRTRYYKINELQN 58 Query: 67 E-RIVTITGYISQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124 V I G I + + K + + D TG+I L +F + + ++ + Sbjct: 59 TGSEVQIIGKIINIKTVEFAKNKKRLVASFVDDTGQIELNWF-QGHKWIRESLKLNEPLV 117 Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVY-SLPTGLSVDLFKKIIVEALSRL 182 + GK ++ M HP + + + ++ VY S T + + + I + + +L Sbjct: 118 IFGKCSLYGSQFSMAHPEIELLSEHEKSLRSAMQPVYPSTETLTNRGISNRTINKMMEQL 177 Query: 183 PVLPEWIEKDLLQKKSFPSI-----------AEAFNIIHNPRKAKDFEWTSPARERLAYD 231 +IE L ++FP A FNI H P+ A + + A+ RL ++ Sbjct: 178 -----FIETGALFTETFPPYLLEEVKLISKRAALFNI-HFPKSA---DALAKAQFRLKFE 228 Query: 232 ELLAGQIALL---LMRKQFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQD 287 EL Q+ L+ L+RK K G P G++ + +N +PF T +Q+ IK+I D Sbjct: 229 ELFFIQLQLITKNLIRKHKIK--GHPFTKVGELFNEFYQNHLPFDLTNAQKRVIKEIRSD 286 Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347 M +M R+LQGDVGSGKT+V ++M A++ G QA +MAP ILA QH+ + ++ Sbjct: 287 MGSNAQMNRLLQGDVGSGKTIVGFMSMLLAIDNGFQACLMAPTEILANQHFIGLSEFANT 346 Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407 I ++I+TG+ + RR E + +G I+IGTHAL +D +++ L L I+DEQHRFG Sbjct: 347 LNISIKILTGSTKTSERRIIHEDLENGSLQILIGTHALLEDKVKFKNLGLAIIDEQHRFG 406 Query: 408 VQQRLKLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV-IIPI 465 V+QR KL +K PHVL+MTATPIPRTL ++ GD+D+S I E P GRKPI+TV Sbjct: 407 VEQRSKLWKKNEIPPHVLVMTATPIPRTLAMSLYGDLDVSVIDELPPGRKPIQTVHRFDT 466 Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIH 522 NR+ +V + L+ +++G++ Y + P I+E ++ +++ +++ + S+ F SI+I+H Sbjct: 467 NRL-KVWKFLRDEIAKGRQIYIVYPLIQESEKMDYKDLMDGYESISRDFPLPQYSISIVH 525 Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582 G+M DK++ M F G +++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGR Sbjct: 526 GKMKPADKDAEMKRFSEGKTNIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGR 585 Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642 VGRG E S CIL+ LS +S TR+ + T DGF IAE DLK R G+++G +QSG+ Sbjct: 586 VGRGAEQSYCILMTGHKLSSDSKTRMETMVQTNDGFEIAEVDLKLRGPGDLMGTQQSGVL 645 Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 IA +L AR A IL +DP L Sbjct: 646 NLQIADIVKDREILSFARNYALKILKEDPPL 676 >gi|147669719|ref|YP_001214537.1| ATP-dependent DNA helicase RecG [Dehalococcoides sp. BAV1] gi|146270667|gb|ABQ17659.1| ATP-dependent DNA helicase RecG [Dehalococcoides sp. BAV1] Length = 818 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 227/657 (34%), Positives = 367/657 (55%), Gaps = 33/657 (5%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLL+Y P+ +D KIS++ TI + Q + RR + +L D TG + Sbjct: 148 DLLYYFPNRHLDYSRLKKISQLEAGPEQTIIANVWQSKVNFMSGRRSTEAVLGDDTGNMR 207 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVY 160 ++F M++N+ R + ++G++ + R + P + + + ++ + VY Sbjct: 208 AVWF-NNPYMVRNLKPNAR-VVLSGRVSIFQGRPVFESPEWEELPDEADLIHTGRLVPVY 265 Query: 161 SLPTGLSVDLFKKIIVEALS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 L GL ++++ + P + +++ + L++ ++EA H P D E Sbjct: 266 PLTAGLHQRSLRRLMKNFIDISSPNISDFMPAETLKRTRLLPLSEAIRQAHFP---DDEE 322 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 + AR RLA+DEL Q+ +L +K++ ++ G +NV + + +PF T +Q Sbjct: 323 LKNAARNRLAFDELFILQLGVLAKKKRWHEQAGRALNVNIPDIDRFVSKLPFKLTDAQTK 382 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 + DI D+S+ M R+LQG+VGSGKT+VA+I++ A G Q MAP ILA+QH++ Sbjct: 383 CLADIKADISKGVPMSRLLQGEVGSGKTIVAVISLFTAASNGLQGAFMAPTEILAEQHFK 442 Query: 340 FIKK---------------YT----QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380 + + YT + + V ++ +M + + E+I G+ I I Sbjct: 443 SVTRLFASIARVSTLLDGIYTFEGLLDRPLKVALLISDMKGSQKDILKEKIKKGEVDIAI 502 Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440 GTHAL Q I++ L L ++DEQHRFGV+QR L K PH+L+MTATPIPRTL LT Sbjct: 503 GTHALIQKEIRFKSLGLAVIDEQHRFGVEQRSALRSKGLNPHILIMTATPIPRTLALTLY 562 Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500 GD+D+S I E P GR+ IKT + + + ++ + EG++A+ ICP +EE + Sbjct: 563 GDLDLSVIDELPPGRQSIKTRWLKPEQRNSAYTFIRKQIQEGRQAFIICPLVEESEVIQA 622 Query: 501 RSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 ++ + +L S +A++HGRM+ +KE++M F G +L++T VIEVGID+ Sbjct: 623 KAATAEYETLSREVFPESRVALLHGRMNASEKETIMRHFSEGEMDILVSTPVIEVGIDIP 682 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618 +A+++++E+A+ FGL+QLHQ RGRVGRG E S C+ L P S RLS++++T+DGF Sbjct: 683 NAAVMLVESADRFGLSQLHQFRGRVGRGTEQSYCMFLAENP-SLLGQERLSIIESTQDGF 741 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLT 674 +AEEDL+ R GE G +QSG+PK +A + D LLE ARK+A + DP+L+ Sbjct: 742 KLAEEDLRLRGPGEFFGTRQSGLPKLRMAS--ISDVGLLEQARKEATRLFELDPELS 796 >gi|28210919|ref|NP_781863.1| ATP-dependent DNA helicase recG [Clostridium tetani E88] gi|28203358|gb|AAO35800.1| ATP-dependent DNA helicase recG [Clostridium tetani E88] Length = 683 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 245/698 (35%), Positives = 379/698 (54%), Gaps = 50/698 (7%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 ++ + +GVG K L+K CG IDLL Y P + + + E++ Sbjct: 3 IYNSVGVLKGVGPKTLENLNK---CGIFT---IIDLLLYFPRDYKIIKTCTSLKDALEKQ 56 Query: 69 IVTITGYISQHSSFQLQKRRPYK---------ILLNDGTGEITLLFFYRKTEMLKNVFFE 119 + IT + L+ +R + I+L + I +F + +KN F Sbjct: 57 EIIITAEV-------LEIKRDVRTRSGKVISTIILQNEEERIKCRWFNQP--YIKNRFRI 107 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVE 177 G+K T+ GK+ K ++++P + N++ N ++ +Y L G+ + K+I + Sbjct: 108 GKKYTLNGKLDVYKGEKLIINPKTVEKNAEATNCTKEIVIPIYPLREGVKNNTLVKLIKD 167 Query: 178 ALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234 L +L + LP WI ++K +F S+ E+ IHNP E+ A+ RL + EL Sbjct: 168 VLDKLIIDENLPTWI----MKKYNFCSLDESIRAIHNPISESQLEF---AKRRLKFQELF 220 Query: 235 AGQIALLLM---RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 + + L+ RKQ K GI + + K+ + F TK+Q+ +++IL+D ++ Sbjct: 221 TYSLKIALLKESRKQSNK--GISFKIYKEEINKLQDKLNFQLTKAQKIVLEEILKDQNKN 278 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351 M R++QGDVGSGKT++A+I + G Q V+M P ILAQQH+ IK I Sbjct: 279 ISMNRLVQGDVGSGKTILAIITLLNVAMNGYQGVLMVPTEILAQQHFIEIKNLLSEFNIR 338 Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411 VE++ G+ + + G+ IIIGTHAL +D +++ KL +VI DEQHRFGV QR Sbjct: 339 VELLCGSTSNKEKSNIKAALKGGEIDIIIGTHALIEDDVEFEKLGIVITDEQHRFGVMQR 398 Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471 KL K +L+MTATPIPRTL L GD+DIS I E P GR+ + T I + D + Sbjct: 399 NKLFTKGEGADILVMTATPIPRTLSLYLYGDLDISIIDELPPGRQKVDTYFINEKKRDRI 458 Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDID 529 ++EG++ Y +CP +EE + SV E + L E++ + I I+HG+M+ + Sbjct: 459 YSFALKEINEGRQVYVVCPLVEENDQLELTSVEELYKDLKENYFNEIEMEILHGKMTPKE 518 Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589 K +M FKN K+LI+TTVIEVGI+V +A+I+++E AE FGLAQLHQLRGRVGRG E Sbjct: 519 KNDIMLRFKNNEIKILISTTVIEVGINVPNATIMVVEGAERFGLAQLHQLRGRVGRGSEK 578 Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649 S CIL+ + + N+ R+ L + DGF IAE+DLK R GE+ G +Q G +++ P Sbjct: 579 SYCILMGNIK-NMNTRKRMETLVKSNDGFFIAEQDLKIRGSGELFGFRQHGEENLILSNP 637 Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687 +L+IA +++ + L S + + ++IL YL Sbjct: 638 IEDIEILKIAHNESQEL------LKSNKKEDLKILGYL 669 >gi|283781500|ref|YP_003372255.1| ATP-dependent DNA helicase RecG [Pirellula staleyi DSM 6068] gi|283439953|gb|ADB18395.1| ATP-dependent DNA helicase RecG [Pirellula staleyi DSM 6068] Length = 699 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 232/703 (33%), Positives = 376/703 (53%), Gaps = 25/703 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRPKISEISEE 67 L P+ RG+G + +L ++ E R D+LF P S+ D ++S++ E Sbjct: 11 LATPVEEIRGIGPARAPYLHRL-------ELRTARDVLFCFPRSYQDMSELREVSQLEEG 63 Query: 68 RIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 + ++ G + + L+ R +L+ GT I ++F + L++ + GR++ V+ Sbjct: 64 VMASVVGVVEEVDFRPLRNGRTLLAVLVRQGTQYIRCMWFSQG--FLRDKYKPGRRVLVS 121 Query: 127 GKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 G K R HP + + +D I VYSL G++ ++++ + + Sbjct: 122 GAPKLQGLRWEFTHPRTQMLADDEDAPTGRILPVYSLTDGITQTQMRRMVQNVVEKYSEY 181 Query: 186 PEWIEKDLLQKK-SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 E + D L+K I+EA +H P + E AR R Y ELL Q+AL + Sbjct: 182 LEEVFPDELRKAHDLLPISEATLEVHFPTSKERLEG---ARRRFIYQELLVLQLALCWRK 238 Query: 245 KQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 + + +P+ ++ +I +I R +PF+ T+SQ I +I DM + M R+LQGDVG Sbjct: 239 SRLETNCTAVPMPIDARIDARITRLLPFALTESQRQVINEITADMGRDRPMNRLLQGDVG 298 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA+ AM V G QA +MAP +LA+QH + +++ + +TG+MP Sbjct: 299 SGKTVVAMFAMLLTVAHGRQAALMAPTEVLARQHARTLADRLAASRVRIACVTGSMPTGE 358 Query: 364 RRKALERIAHGQAHIIIGTHALFQDS----IQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R++ L +I G+ I++GTHA+ + + + KL LV++DEQH+FGV+QR L Sbjct: 359 RKQTLAKIQQGEIDIVVGTHAIAASAGGSDLPFAKLGLVVIDEQHKFGVRQRAALKGAGE 418 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 PH L+MTATPIPRT+ LT GD+++S +T P GR+ + T + R + + L Sbjct: 419 NPHYLVMTATPIPRTISLTLFGDLEVSTLTGTPPGRQKVNTYCVGDERREGWWNFFRKRL 478 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSF 537 +EG++ Y I P +E+ + +SV + L E I ++HG+MS +K+ ++ F Sbjct: 479 AEGRQGYVIAPLVEQSEHIEAQSVTTLYEKLSEGELQGIRCGMLHGKMSSTEKDEILTRF 538 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 + G ++LIAT VIEVGIDV +A+++ IE+ E FGLAQLHQLRGRV RG+ C + Sbjct: 539 EAGKLQVLIATPVIEVGIDVPNATLMTIEDGERFGLAQLHQLRGRVTRGQHPGFCCVFAQ 598 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 P ++ S RL+ + DGF +AE D + R G++LG KQ G+P +A +L Sbjct: 599 PS-TEESQQRLAAFTQSTDGFELAEIDFRLRGPGDLLGTKQHGLPPLRMADLVRDREILL 657 Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 AR DA+ +L + P+L + +R ++ L +Y + G Sbjct: 658 KARVDAQQMLLESPELATQELAKLRRMV-LVRYGKTLDLGSVG 699 >gi|225869886|ref|YP_002745833.1| ATP-dependent DNA helicase [Streptococcus equi subsp. equi 4047] gi|225699290|emb|CAW92639.1| ATP-dependent DNA helicase [Streptococcus equi subsp. equi 4047] Length = 671 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 232/634 (36%), Positives = 368/634 (58%), Gaps = 25/634 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLL Y+P + D + + + E+ V +TG + S Q + ++ GE+ Sbjct: 31 DLLLYYPFRYEDFKSKSALELLDGEKAV-LTGRVVTPPSVQYYGFKRNRLSFKLKQGELV 89 Query: 103 L-LFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161 + + F+ + +L+ + + +++ + G+ + K + + + ++ VY Sbjct: 90 ISVSFFNQPYLLEKIVLD-QEVAIFGRWDQKKAALTGMKLLMTLEDD-------LQPVYH 141 Query: 162 LPTGLSVDLFKKIIVEALSR--LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 + G+S K I A L L E + + L+QK A +H P+ +D++ Sbjct: 142 VAQGISQPTLIKAIRSAFDSGALAQLEENLPEPLIQKYRLLPRQAAVYAMHFPKHMEDYK 201 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKE---IGIPINVEGKIAQKILRNIPFSPTKS 276 A R+ ++E Q+ L +++ K E + IP + + +A+KI +PFS T++ Sbjct: 202 ---QALRRIKFEEFFYFQMNLQVLKLANKAEGNGLAIPFHQQA-VAKKI-AALPFSLTRA 256 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q+ ++++IL DM+ M R+LQGDVGSGKT++A +AM AA AG Q+ +M P ILA+Q Sbjct: 257 QQRSLEEILADMTSGAHMNRLLQGDVGSGKTVIASLAMYAAQTAGFQSALMVPTEILAEQ 316 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 HY+ + + + I ++T M A +R AL IA G +I+GTHAL QD++ Y+KL Sbjct: 317 HYDSLCQLFPDLSI--ALLTSGMKAAEKRAALSAIADGSVDMIVGTHALIQDAVTYHKLG 374 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 LVI DEQHRFGV QR +K P VL+MTATPIPRTL +T+ G++D+S I E PAGRK Sbjct: 375 LVITDEQHRFGVNQRRLFREKGNNPDVLMMTATPIPRTLAITAYGEMDVSIIDELPAGRK 434 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-- 514 PI T + ++D V+ +K L++G +AY I P IEE + + ++ V L ++F Sbjct: 435 PIITRWVKHRQLDSVLAWVKTELAKGTQAYVISPLIEESETLDLKNAVALEAELKDYFKA 494 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 ++S+A++HG+M DKE +M FK +L++TTVIEVG++V +A+I++I NA+ FGL+ Sbjct: 495 SASVALMHGKMKADDKEMIMQRFKAKEIDVLVSTTVIEVGVNVPNATIMLIMNADRFGLS 554 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG + S IL+ P + + R++++ T DGF++AE DLK R GEI Sbjct: 555 QLHQLRGRVGRGSKQSYAILVADPK-TDSGKERMTIMTTTNDGFVLAEADLKLRGSGEIF 613 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668 G +QSG+P+F A +LE AR+ A I+ Sbjct: 614 GTRQSGLPEFKTADIVEDYHILEEARRVAAEIVA 647 >gi|304437335|ref|ZP_07397294.1| DNA helicase RecG [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369591|gb|EFM23257.1| DNA helicase RecG [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 706 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 242/671 (36%), Positives = 365/671 (54%), Gaps = 42/671 (6%) Query: 1 MRPSFLNP------LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID 54 MR FL L ++ RGVG K + L+++ DLL ++P ++ D Sbjct: 7 MRQPFLKEWRKRVNLTDSVNAVRGVGVKKAALLARL------GVRTVYDLLTFYPRAYED 60 Query: 55 RHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTE 111 + +I +++ T+ G I Q Q +RR + +L + DGTG ++F ++ Sbjct: 61 QSRITRIMDLAAGTRATVHGVIQQVVERQ-TRRRGFTVLTALVGDGTGYAQAVWFNQR-- 117 Query: 112 MLKNVFFEGRKITVTGKIKKL-----KNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTG 165 LK G++I +TGK+ + V + + +D L I VY+ G Sbjct: 118 FLKGKLRAGQRILLTGKVDYAYGGGGQMAFSPVTSFALLGSQEDATAHLGILPVYAATEG 177 Query: 166 LSVDLFKKIIVEALSR-----LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220 L+ +++ + L+ + LPE I + A AF IH P KD E Sbjct: 178 LTQKQLRQMTADVLAHAGEALMETLPEQIRAEY----HLIGRAAAFRQIHFP---KDTEE 230 Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQES 279 + AR RLA++EL Q LL ++KQ + E GI G + ++ +PF+ T+ QE Sbjct: 231 LAAARRRLAFEELYLIQCGLLALKKQTAEHEEGIAHRANGALIARVRDALPFALTEDQEK 290 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 +I +DM M R++QGDVGSGKT +AL+A+ VE+G Q +MAP ILA+QHY+ Sbjct: 291 VWAEISRDMEAPLPMRRLVQGDVGSGKTAIALLALVKTVESGCQGALMAPTEILARQHYD 350 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 +++ I V ++G + + + L +A + IIIGTHAL Q+ + + L LV+ Sbjct: 351 GLRELLTPLGIRVGFLSGRLTKKEHTEVLSALAAHEIDIIIGTHALIQEGVAFDSLGLVV 410 Query: 400 VDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 DEQHRFGV QR L +K+ P VL+MTATPIPRT+ LT GD+D+S+I P GR+PI Sbjct: 411 TDEQHRFGVAQRSALEKKSGVVPDVLVMTATPIPRTMTLTVYGDLDVSRIEHLPPGRQPI 470 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518 +T + ++ ++ + G++AY +CP IE +ES+ S E + L I Sbjct: 471 RTFLRDETARAKIYAFVRREIERGRQAYVVCPLIEANEESDLPSAEEVYAELSRGSFCGI 530 Query: 519 --AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 ++HGR+ DKE+VM F G KLL+ATTVIEVG++V +A+++++E+AE FGLAQL Sbjct: 531 RCGLVHGRLKAADKEAVMRGFYAGEIKLLVATTVIEVGVNVPNATVLVVEHAERFGLAQL 590 Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636 HQLRGRVGRG + S CIL+ ++ RL V++ T DGF +AEEDL+ R G+ G Sbjct: 591 HQLRGRVGRGSDASYCILIAGRQVAGAE--RLRVIEETSDGFRLAEEDLRLRGPGQFFGA 648 Query: 637 KQSGMPKFLIA 647 Q G+ IA Sbjct: 649 MQHGLGDLKIA 659 >gi|257899371|ref|ZP_05679024.1| ATP-dependent DNA helicase RecG [Enterococcus faecium Com15] gi|257837283|gb|EEV62357.1| ATP-dependent DNA helicase RecG [Enterococcus faecium Com15] Length = 678 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 233/665 (35%), Positives = 379/665 (56%), Gaps = 27/665 (4%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 + L P++ GVG+K + L+ + DLL Y+P + D R ++EI Sbjct: 1 MRSLDDPITMLAGVGEKRAASLASL------GIQTIEDLLTYYPFRYEDIQER-NLNEIQ 53 Query: 66 EERIVTITGYISQ---HSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 ++ VT+ G + + F +K R ++++ ++ FF + LK Sbjct: 54 DQEKVTLKGIVVSPPVMNRFGYKKSRLQFRMMQEHDVFNVS--FFNQP--YLKEKVILSE 109 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 +I V GK R + + + D P+ S+ VDL KK E + Sbjct: 110 EIAVYGKWDA--KRKALNGMKILGSQTMDDFSPIYHVNKSIRQTTLVDLIKKGFQEYGT- 166 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 ++ E + +L++K A A +H P K+ E A+ R+ ++E Q+ L Sbjct: 167 --LIEENLPNNLVEKYRLLDRASAVRSMHFP---KNHEENHQAKRRVVFEEFFLFQMRLQ 221 Query: 242 LMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 ++K K E G+ I + + ++ + +PF T +Q+ +I +D+ M R+LQG Sbjct: 222 GLKKAEKAETNGLEILYDVQKLKEFTQKLPFELTNAQKRVTNEICRDLRSPQHMQRLLQG 281 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA IA+ A V AG Q +M P ILAQQH E +++ ++ V ++TG+ Sbjct: 282 DVGSGKTVVAAIALYATVIAGFQGALMVPTEILAQQHMESLQQLFDPNEVTVALLTGSTK 341 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 RR+ LE++ G+ +++IGTHAL QD +++ L LVI DEQHRFGV QR L +K Sbjct: 342 TKERRELLEKLERGEINVVIGTHALIQDGVEFQNLGLVITDEQHRFGVNQRKVLREKGWR 401 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 P VL MTATPIPRTL +T+ G++D+S I E PAGR PI+T + ++D V++ + L+ Sbjct: 402 PDVLFMTATPIPRTLAITAYGEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTRKELA 461 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFK 538 G + Y ICP IEE + + ++ VE + L E F + ++HG+M + +KE +M++FK Sbjct: 462 RGHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAFK 521 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 + ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P Sbjct: 522 DNQMQILVSTTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVANP 581 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 ++ R+ ++ T +GF+++E+DL+ R GE+ G +QSG+P+F IA ++LE+ Sbjct: 582 K-NELGVERMKIMTETTNGFVLSEKDLELRGPGEVFGFRQSGLPQFAIADLVTDGNVLEV 640 Query: 659 ARKDA 663 AR++A Sbjct: 641 AREEA 645 >gi|229541126|ref|ZP_04430186.1| ATP-dependent DNA helicase RecG [Bacillus coagulans 36D1] gi|229325546|gb|EEN91221.1| ATP-dependent DNA helicase RecG [Bacillus coagulans 36D1] Length = 682 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 236/684 (34%), Positives = 381/684 (55%), Gaps = 28/684 (4%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 +PL P+S +G+G++ L G DLL Y P + D + + E+ Sbjct: 3 SPLDQPVSVLKGIGEETEASL------GQMGIFTIYDLLTYFPFRYEDDRLK-DLREVRH 55 Query: 67 ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 + VT+TG + S ++ ++ + G+ + LK ITVT Sbjct: 56 DERVTVTGRVHSEPSLIYYSKKRSRLSMKVFAGDFLITVVCFNQPYLKKKIHVHDVITVT 115 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-L 185 GK + + I Q F VY++ ++V +K I A + Sbjct: 116 GKWD-MHRQTITAQSVKTGTADQTSGFG---PVYAVKGKMTVKTLRKYIQSAFHAYGSEI 171 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 E + ++L K +A +H P+ ++ + AR + Y+E LA Q+ + +RK Sbjct: 172 EEALPAEMLAKYKLMPKKQAMYAMHFPKSEQEVKM---ARRTIVYEEFLAFQLKMQALRK 228 Query: 246 QFKKE--IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 F++E G I + + + + ++PFS T +Q+ + +I D+ RM R+LQGDVG Sbjct: 229 -FEREHSNGRAIRYDVRKLRHFIGSLPFSLTAAQKRVVNEICADLKSPFRMNRLLQGDVG 287 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA IA+ AAV AG Q +M P ILA+QH E + + + + V ++T + Sbjct: 288 SGKTVVAAIALYAAVTAGFQGALMVPTEILAEQHAESLCQLLEPHGVQVALLTSTVKGKR 347 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 R+ LE++ G I+IGTHAL Q+ + + +L LVI DEQHRFGV+QR L +K P V Sbjct: 348 RKALLEQLGTGGIDILIGTHALIQEDVAFSRLGLVITDEQHRFGVEQRRILREKGMNPDV 407 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPRTL +T G++D+S I + PAGRK I+T + N + V+ ++ L +G+ Sbjct: 408 LFMTATPIPRTLAITVFGEMDVSVIDQMPAGRKKIETYWVKNNLFERVLGFIEKELKKGR 467 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541 +AY ICP IEE + + ++ ++ + L+++F + ++HGR+ +KE+VM +F Sbjct: 468 QAYVICPLIEESDKLDVQNAIDVYAILNQYFNGRYTAGLMHGRLPGDEKEAVMKAFSRNE 527 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTV+EVG++V +A+I++I +AE FGLAQLHQLRGRVGRG+ S CILL P + Sbjct: 528 IQVLVSTTVVEVGVNVPNATIMVIYDAERFGLAQLHQLRGRVGRGDAQSYCILLADPK-T 586 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660 + R+ ++ T++GF+++E+DL+ R G+ G KQSG+P+F +A +HD LE AR Sbjct: 587 EIGKERMKIMTETDNGFVLSEKDLELRGPGDFFGKKQSGLPEFKVADM-VHDFRALETAR 645 Query: 661 KDAKHILT-----QDPDLTSVRGQ 679 +DA+ +++ DP + +R Q Sbjct: 646 QDAQQLISSDTFWHDPAFSHLRRQ 669 >gi|304404155|ref|ZP_07385817.1| ATP-dependent DNA helicase RecG [Paenibacillus curdlanolyticus YK9] gi|304347133|gb|EFM12965.1| ATP-dependent DNA helicase RecG [Paenibacillus curdlanolyticus YK9] Length = 682 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 236/638 (36%), Positives = 365/638 (57%), Gaps = 19/638 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSF----QLQKRRPYKILLNDGT 98 DLL Y P + D R ++E+ + VT+ G+I + + + R K+ ++ Sbjct: 32 DLLDYFPFRYEDYRLR-DLTEVKDGEKVTVQGHIRSLPAVARFGRGKARMSCKVEIDHFL 90 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 +T ++F R L++ GR+IT+TGK ++++ + F + ++ Sbjct: 91 --VTAVWFNRA--FLQDQLVLGREITLTGKWDANRHQLTVSESE--FPDRGKSRSGSLQP 144 Query: 159 VYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 VYS+ L+ +K I +AL + ++ + + L+ K EA IH+P A + Sbjct: 145 VYSVGGSLTQPFMRKAIGQALIQFGDLIEDSLPPQLISKHRLIPRQEAVMRIHHPEGAAE 204 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKS 276 + AR RL Y+EL Q+ L R + + G+ ++ + + +PF T S Sbjct: 205 GQG---ARRRLVYEELFWFQLKLQAYRSLLRTRSDGMAFPIDSAVIRDFAARLPFELTDS 261 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q+ + +I QDM QK+ M R+LQGDVGSGKT+VA IA+ AA +AG Q +M P ILA+Q Sbjct: 262 QKKVVNEITQDMRQKHGMNRLLQGDVGSGKTVVAAIALYAAAKAGHQGALMVPTEILAEQ 321 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 H +++ T + V ++TG++ RR L + G I IGTHAL QD + + L Sbjct: 322 HLRSLQRLFDGTGVEVGLLTGSVTARKRRDILAGLQMGMIDIAIGTHALIQDDVIFRSLG 381 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 LV+ DEQHRFGV QR L +K +P VL MTATPIPRTL +T+ GD+D+S + E+P GRK Sbjct: 382 LVVTDEQHRFGVNQRSVLRRKGLSPDVLTMTATPIPRTLAITAFGDMDVSTLRERPKGRK 441 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 PIKT + +D V E ++ +G++AY ICP IEE ++ + ++ ++ ++ Sbjct: 442 PIKTHWTKPSAMDRVFEFIQREADQGRQAYVICPLIEESEKLDVQNAIDMHATIAMSLPK 501 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + ++HGRM+ +K+ M +F ++L+ATTV+EVG+DV +A++I+I +AE FGL+Q Sbjct: 502 LKVGLLHGRMTTAEKDEAMRAFGANETQVLVATTVVEVGVDVPNATLIVIIDAERFGLSQ 561 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRGE S CIL+ P S+ R+ V+ T+DGF +A +DL+ R G+ G Sbjct: 562 LHQLRGRVGRGEHQSHCILVADPK-SETGRERMKVMTETDDGFEVARKDLELRGPGDFFG 620 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 KQSG+P+F +A LE AR+DA LT +PD Sbjct: 621 TKQSGVPEFKLADMVADFETLEEAREDAAE-LTSEPDF 657 >gi|254526118|ref|ZP_05138170.1| Type III restriction enzyme, res subunit family [Prochlorococcus marinus str. MIT 9202] gi|221537542|gb|EEE39995.1| Type III restriction enzyme, res subunit family [Prochlorococcus marinus str. MIT 9202] Length = 618 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 221/568 (38%), Positives = 334/568 (58%), Gaps = 14/568 (2%) Query: 114 KNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDL 170 K+++ G K+ ++GK+K + V P + NF I +YSL LS Sbjct: 33 KSLYTPGTKLAISGKVKLTEYGKTFVDPQIEILKGINDNFNYSGKILPLYSLGEALSNMS 92 Query: 171 FKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAY 230 F K++ + L PE + K L S S E+ IH P + +++RL + Sbjct: 93 FIKLMKKVLIYAKQYPEILNKKQLDSLSLLSKGESLINIHFPLTQ---QALLESKKRLVF 149 Query: 231 DELLAGQIALLL-MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289 DEL QI LL RK K I + + + ++ L PF TKSQE+ + +I +D+S Sbjct: 150 DELFLLQIKFLLRKRKTNKNVISQQLPQKKSLLKEFLNTFPFELTKSQENVLNEIKKDLS 209 Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349 M R+LQGDVGSGKT++A+ ++ +E Q M P +LA+QHY+ + KY Sbjct: 210 NPVPMSRLLQGDVGSGKTIIAIASLLLVIEKNLQGAFMVPTEVLAEQHYKNLLKYLDPLL 269 Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409 + VE++TGN PQ R++ + +G I++GTHALF+D + + L +V++DEQHRFGV Sbjct: 270 VSVELLTGNTPQKKRKEIFSNLKNGLVDILVGTHALFEDKVIFNGLGMVVIDEQHRFGVS 329 Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469 QR +L K ++L MTATPIPRTL L+ GD+D+S+ITE P GR PI T II + + Sbjct: 330 QRNRLLNKGENTNLLSMTATPIPRTLALSIYGDLDVSQITELPPGRVPITTKIISEDDLS 389 Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH--FTSSIAIIHGRMSD 527 + + + +++G++AY I P IE+ ++ N S + F L E F + ++HG+++ Sbjct: 390 NLFKIVDDEITKGRQAYVILPLIEDSEKMNLSSAKKIFKYLSEEVFFNKKVGLLHGKLNS 449 Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587 +K V++SF + +L++TTVIEVGIDV +A+I+II N++ FGL+QLHQLRGRVGRG Sbjct: 450 QEKNEVINSFIDNEINILVSTTVIEVGIDVPNATIMIIYNSDRFGLSQLHQLRGRVGRGS 509 Query: 588 EISSCILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645 S C L+ KN RL VL+ + DGF IAE+DL+ R G+ILG +QSG+P F+ Sbjct: 510 TKSFCYLVTS---DKNGLENKRLCVLQKSNDGFYIAEKDLELRGPGQILGYRQSGLPDFV 566 Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDL 673 + + L++ AR++A I++ DPDL Sbjct: 567 LDNLPDNKFLIDKAREEAIKIVSDDPDL 594 >gi|221632119|ref|YP_002521340.1| ATP-dependent DNA helicase RecG [Thermomicrobium roseum DSM 5159] gi|221156495|gb|ACM05622.1| ATP-dependent DNA helicase RecG [Thermomicrobium roseum DSM 5159] Length = 807 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 241/684 (35%), Positives = 370/684 (54%), Gaps = 40/684 (5%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID-----------RHYRPK 60 P++ GVG + + L + T DLLF P ++D R RP Sbjct: 122 PVTVLPGVGSQRARQLEAL------GVTTVRDLLFLVPRRYLDYTQVVPIGRLGRLVRP- 174 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFE 119 EE ++ G + Q + + R Y + L D TG I +++F + Sbjct: 175 ----GEEVTCSVIGEVVQIETRETSGGRRYVSVQLRDETGTIPVIWF---NPYIARQLEA 227 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G++I V+G+++ + +P + ++ + I VY L GL +++ AL Sbjct: 228 GQRIAVSGRLEGHGPYVRFRNPEWEPAEAELLQAGRIVPVYPLTQGLYQRQVRQLTRAAL 287 Query: 180 S-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 LP L + + L ++ PS+A A +H P E RLA+DE L Q+ Sbjct: 288 DLALPRLEDPLPPALRERNRLPSLAWALEQLHYPETLAAAERAR---RRLAFDEFLVLQL 344 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 L+ R + + GI I ++ + L ++PF T +Q A+++IL D+++ + M R+L Sbjct: 345 GLVQRRLAWHAQAGIAIPIDRAFLETFLASLPFQLTGAQRRALEEILADLAEPHPMSRLL 404 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN----TQIIVEI 354 QGDVGSGKT+VA A AG QA I+AP ILA+QH+ + + + +V + Sbjct: 405 QGDVGSGKTVVAAAAALLVHRAGYQAAILAPTEILAEQHFRTLTRLYHGLPGGERPLVAL 464 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 +TG+ P+ R L +A G II+GTHAL ++ +Q+ +L L ++DEQHRFGV QR L Sbjct: 465 LTGSTPERDRGSILAGLASGTISIIVGTHALLEERVQFRRLALAVIDEQHRFGVLQRHTL 524 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 K PHVL+MTATPIPR+L L GD+D+S I E P GR+P+KT ++P + + E Sbjct: 525 RSKGENPHVLVMTATPIPRSLALVLHGDLDLSIIDELPPGRQPVKTYVVPGRKRTQAYEF 584 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKES 532 ++ + +G +A+ ICP +EE + R+ + L + ++HGRMS +KE Sbjct: 585 VRREIEKGHQAFIICPLVEESEAIEARAATAEYERLQREVFPDLRLGLLHGRMSPREKED 644 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 VM F++G +L++T V+EVGID+ +A++I+IE AE FGLAQLHQ RGRVGRG S C Sbjct: 645 VMTRFRDGELHILVSTAVVEVGIDIPNATVILIEGAERFGLAQLHQFRGRVGRGSAPSYC 704 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +L+ ++ + RL + +T DGF +AE DL+ R GE LG +QSG+P A L Sbjct: 705 LLVSDAS-TETARQRLEAVASTTDGFRLAEIDLELRGPGEFLGTRQSGLPNLRFAS--LA 761 Query: 653 D-SLLEIARKDAKHILTQDPDLTS 675 D S L+ AR+ A+ +L QDP L + Sbjct: 762 DLSTLQAARRTAEDLLRQDPLLAA 785 >gi|189500980|ref|YP_001960450.1| ATP-dependent DNA helicase RecG [Chlorobium phaeobacteroides BS1] gi|189496421|gb|ACE04969.1| ATP-dependent DNA helicase RecG [Chlorobium phaeobacteroides BS1] Length = 719 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 236/693 (34%), Positives = 371/693 (53%), Gaps = 45/693 (6%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ RGVG + + L G + DL + P ++DR +S + E T Sbjct: 19 PVTCIRGVGPRKAALL------GQSGIETIADLYDFFPRRYLDRRIIKPVSGLVEGEPAT 72 Query: 72 ITGYISQHSSFQLQKRRPYKILLN----DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 + G +++ Q RP LN D +GE+ L++F R + +G + V G Sbjct: 73 VVGTVTK---VYRQHARPGHSRLNVTLLDKSGELELVWF-RSVSHVSAAVRQGDTLAVHG 128 Query: 128 KIKKLKNRIIMVHPHY---------IFHNSQDVN-----------FPLIEAVYSLPTGLS 167 K+ + M HP Y + DV+ +P EA G+ Sbjct: 129 KVVFFGRQRQMQHPEYERLNPDAHGSTEDGDDVSALLYTGKIVPVYPSSEARKG--AGMG 186 Query: 168 VDLFKKIIVEALS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE 226 + ++ +A + P E + + ++ + I +A+ +IH P + E A Sbjct: 187 PKGMRGLLEKAFTLNPPCFRENLSEKIISQYGLLPINQAYRMIHFPSSPEMLER---ALY 243 Query: 227 RLAYDELLAGQIALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285 R + EL Q+ + R K++ + G +++ ++PF T++Q+ A+++I Sbjct: 244 RFKWTELFYAQLFFAIRRTALKEQNRAVRFERSGLFTKRLYASLPFVMTEAQKKAVREIY 303 Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345 +D+ RM R+LQGDVGSGKTLVA+ AMA A + G QA MAP ILA QHY +KK Sbjct: 304 RDLRSGIRMNRLLQGDVGSGKTLVAMFAMALAADNGLQAAFMAPTEILAFQHYMVLKKNE 363 Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405 + + ++G RR L+R+ G+ HI++GTHA+ ++ +++ KL L ++DEQHR Sbjct: 364 GALGLRIGFLSGRQKAKERRDVLDRLEDGRLHILVGTHAVIEEGVRFKKLGLAVIDEQHR 423 Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465 FGV QR L KA +PH+LLMTATPIPRTL + GD+D++ I + P GRK + T + Sbjct: 424 FGVLQRKALQDKAGSPHILLMTATPIPRTLAMGVYGDLDVTVIDQLPFGRKRVVTRMRSE 483 Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHG 523 + +EV+ L+ + +G++AY + P +EE K+ + ++ E F L + I ++HG Sbjct: 484 RQKNEVLAVLRQEIEKGRQAYIVYPLVEESKKIDLKAATESFLQLRDELLPGLRIGLLHG 543 Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583 +M +KESVM+ F++GT LL+ TTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRV Sbjct: 544 QMRSEEKESVMERFRSGTLDLLVGTTVIEVGVDVPNASVMVIEHAERFGLAQLHQLRGRV 603 Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MP 642 GRG E S C LL H + ++ RL+ ++ DGF ++E D R G +LG +QSG M Sbjct: 604 GRGAEQSYCFLL-HAAVGGDARERLAAMERNHDGFRLSEIDASLRGTGNVLGKEQSGTMT 662 Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 +A ++ AR+ A + QD L+ Sbjct: 663 GMKVADIVRDYDIMCSAREAAIETVEQDSALSD 695 >gi|160935086|ref|ZP_02082472.1| hypothetical protein CLOLEP_03962 [Clostridium leptum DSM 753] gi|156866539|gb|EDO59911.1| hypothetical protein CLOLEP_03962 [Clostridium leptum DSM 753] Length = 682 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 240/669 (35%), Positives = 362/669 (54%), Gaps = 26/669 (3%) Query: 13 LSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 L + +GVG K + K+ ++ A LL Y+P ++ D + +I + V Sbjct: 9 LQSLKGVGAKRAQLFEKLGVDSVGA-------LLRYYPRAYEDWSHPFEIDAAPFDCPVC 61 Query: 72 I-TGYISQHSSFQLQKRRP-YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 I IS+ + +++K Y+ +DG+ + L FF + + N+ + + GK+ Sbjct: 62 IRAAVISKVTETRIRKGMTLYRCQASDGSSVMRLTFFNNR--YIPNLIKQNGEYLFYGKV 119 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEW 188 + M P + P VY GLS + + +ALS LP + + Sbjct: 120 GGTFTKREMTSPSFTTSAESSGFHP----VYGQTEGLSSRQIEAAVRQALSLLPERVNDP 175 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248 + ++L + +A IH P+ + AR RL ++EL Q+ L ++ + + Sbjct: 176 LPEELRASYQLEELGQAIRDIHLPQSEPAL---NAARRRLIFEELFVLQLGLCQLKTRNR 232 Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 +E + + +Q+ +PF PT +Q A+ + + DM +K M R++QGDVGSGKT Sbjct: 233 RETSCFLTAD--RSQEFFSCLPFPPTGAQRRAVAECVADMRRKTPMNRLIQGDVGSGKTA 290 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VA A G Q+ MAP ILA+QHY ++K + T + V ++TG+ Q RR+ L Sbjct: 291 VAAALCYCAAREGIQSAFMAPTEILAEQHYHTMEKLFEGTGVSVALLTGSTKQRERRELL 350 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428 + GQ H++IGTHAL D +++ +L LVI DEQHRFGV QR L K PH+L+M+A Sbjct: 351 FALKAGQIHLLIGTHALLSDPVEFQRLGLVITDEQHRFGVAQRAALAGKGENPHLLVMSA 410 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488 TPIPRTL L GD+D+S + E P GR+ I T I + L+ L++G + Y + Sbjct: 411 TPIPRTLALMIYGDLDVSVLDELPPGRQKIDTFWIDSKKRGRAYGFLQKHLNQGLQGYIV 470 Query: 489 CPQIE-EKKESNFRSVVERFNSL--HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545 CP +E E E++ S VE SL E + ++HGRM +KE+VM +F G LL Sbjct: 471 CPLVENESGEASLASAVEYAESLKAREFRDYRVGLLHGRMKPAEKEAVMRAFSRGELDLL 530 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 ++TTVIEVG+DV +A I++IENAE FGL+QLHQLRGRVGRG+E S CIL+ + Y Sbjct: 531 VSTTVIEVGVDVPNAVIMLIENAERFGLSQLHQLRGRVGRGKEKSYCILVSDAQNEEAVY 590 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665 RL + T DGF IA+EDLK R G+ G +Q G+P+ IA +L A++ AK Sbjct: 591 -RLKAMCRTNDGFQIADEDLKLRGPGDFFGARQHGLPELKIADMLGDMDILSQAQQAAKI 649 Query: 666 ILTQDPDLT 674 +L +DP L+ Sbjct: 650 LLKKDPALS 658 >gi|206901942|ref|YP_002250862.1| ATP-dependent DNA helicase RecG [Dictyoglomus thermophilum H-6-12] gi|206741045|gb|ACI20103.1| ATP-dependent DNA helicase RecG [Dictyoglomus thermophilum H-6-12] Length = 778 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 241/668 (36%), Positives = 374/668 (55%), Gaps = 29/668 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P+ +GVG + L+K+ DL+ Y+P + DR KISE+ VT Sbjct: 96 PVQFLKGVGPHRAKLLNKL------EIYTIYDLITYYPRDYDDRSKLKKISELKPGEKVT 149 Query: 72 I-TGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 I I + L K+ P K L DGTG + +++ +K +K +G + ++G++ Sbjct: 150 IKVKIIDYEETKTLYKKIPIIKAKLTDGTGIVYGVWYGQK--YIKQALPQGTDVLISGEV 207 Query: 130 KKLKNRIIMVHPHYIFHNSQD---VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186 K++ I +P Y + +D +N I +YSL +GL+ + +KII +AL+ + Sbjct: 208 KRVLKHIEFENPEYEVLDEEDKEFLNVGRIVPIYSLTSGLTQKVLRKIIYDALTDYSIFL 267 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD------FEWTSPARERLAYDELLAGQIAL 240 E D L K + E +N++ P + F + A +R+A++EL Q+ L Sbjct: 268 E----DPLPK----YLREKYNLMDKPVSIWEKHFPTSFLTMASASKRIAFEELFFLQLNL 319 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 RK+ +K + ++ ++ L ++PF TK+QE ++I +D+S M R+LQG Sbjct: 320 AEKRKEIEKLSAPVFKTDSELVERFLNSLPFKLTKAQEKVWEEIKKDLSSGRPMHRLLQG 379 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT++A +A A + G Q M P ILA+QHY +KK + I + ++T + P Sbjct: 380 DVGSGKTVIAALAAILAYDNGYQTAFMVPTEILAEQHYNRLKKIFEPLGIRIALLTSSTP 439 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 + + +A G+ I+IGTHAL Q+ + + KL LVI+DEQHRFGV QR KL +K Sbjct: 440 KKEKTYIYLDLAEGKLPIVIGTHALIQEEVTFKKLGLVIIDEQHRFGVIQRAKLWKKGEN 499 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 PH+L+MTATPIPR+L L G++DIS I E P GRKP+ T + +V ++ + Sbjct: 500 PHLLVMTATPIPRSLALVLYGELDISIIDELPPGRKPVITYLFSKRERKKVYSFVEKEIM 559 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539 +GK+A+ +CP IEE ++ S + + L + F I +IHG + ++ +M+ F+N Sbjct: 560 KGKQAFVVCPLIEESEKLEAESAKKLYEELKKFFPQFKIGLIHGLVPSEERNRIMEEFQN 619 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G ++L+ATTVIEVG+D+ +ASI++IE+A FGLAQLHQLRGRVGRG E + C L+ Sbjct: 620 GEIQILVATTVIEVGVDIPNASIMVIEDAHRFGLAQLHQLRGRVGRGSEQAYCFLIADLK 679 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 +++ RL V+ T DGF+IA +DL+ R GE G +Q G LI L EIA Sbjct: 680 -GEDATERLKVMVETNDGFVIANKDLEIRGPGEFFGTRQHGALNSLIVDLTKDMKLFEIA 738 Query: 660 RKDAKHIL 667 R +A ++ Sbjct: 739 RNEAFELM 746 >gi|315221232|ref|ZP_07863155.1| ATP-dependent DNA helicase RecG [Streptococcus anginosus F0211] gi|315189591|gb|EFU23283.1| ATP-dependent DNA helicase RecG [Streptococcus anginosus F0211] Length = 690 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 241/669 (36%), Positives = 377/669 (56%), Gaps = 26/669 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL+ GVG K + +K+ DLL Y P + D + + E+ + Sbjct: 22 LHQPLTVLPGVGPKSAEKFTKL------GIESLQDLLLYFPFRYEDFKSK-NVLELEDGE 74 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 I+G ++ ++ Q + ++ GE+ L + L + G I + GK Sbjct: 75 KAVISGVVTTPANVQYYGYKRNRLRFTIKQGEVVLAVNFFNQPYLADKVEVGSTIAIFGK 134 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL--SRLPVLP 186 K K + + I +D ++ VY + G+S K+I A S +L Sbjct: 135 WDKAKASLTGMK---ILAQVEDD----LQPVYRVAQGISQASLVKVIKTAFDQSLELLLE 187 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL++ ++A +H P KD A R+ ++EL Q+ L +++ + Sbjct: 188 ENLPQILLERYQLVERSQAVRAMHFP---KDLTEYKQALRRVKFEELFYFQMQLQVLKCE 244 Query: 247 FKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 K G+ I + + + +PF T +QE ++ +ILQDM M R+LQGDVGSG Sbjct: 245 TKDVSQGLIIPWQADLLENKKATLPFELTVAQERSLNEILQDMKSPAHMNRLLQGDVGSG 304 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM A AG Q+ +M P ILA+QH++ + + +II ++TG M A RR Sbjct: 305 KTVVAGLAMYATYTAGLQSTLMVPTEILAEQHFDSLSQLFPELRII--LLTGGMKPAERR 362 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 +ALE I GQ +I+GTHAL Q+S+ Y++L LVI+DEQHRFGV QR L +K P VL+ Sbjct: 363 QALEAIEVGQVDMIVGTHALIQESVIYHQLGLVIIDEQHRFGVGQRRILREKGNNPDVLM 422 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T + +++ V++ L L G + Sbjct: 423 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLLKELQRGAQI 482 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L +F + +A++HG+M +K+++M FK G Sbjct: 483 YVISPLIEESEALDLKNAIALEKELKAYFGDKAHVALLHGKMKSDEKDAIMQDFKEGKTD 542 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S +L+ +P +++ Sbjct: 543 ILVSTTVIEVGVNVPNATVMLIMDADRFGLSQLHQLRGRVGRGNKQSYAVLVANPK-TES 601 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T DGF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 602 GKKRMKIMTETTDGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADILEDYPILEEARKVA 661 Query: 664 KHILTQDPD 672 I++ PD Sbjct: 662 SQIVST-PD 669 >gi|313889712|ref|ZP_07823355.1| ATP-dependent DNA helicase RecG [Streptococcus pseudoporcinus SPIN 20026] gi|313122009|gb|EFR45105.1| ATP-dependent DNA helicase RecG [Streptococcus pseudoporcinus SPIN 20026] Length = 671 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 236/679 (34%), Positives = 382/679 (56%), Gaps = 27/679 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEISEE 67 L +PLS +G G K + K+ N +LL Y+P + D ++ K + ++ + Sbjct: 3 LHSPLSELKGFGPKSAEKFQKL------NIFTIEELLLYYPFRYED--FKSKSVFDLQDG 54 Query: 68 RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 +TG + ++ Q + ++ G++ + + L + G+++ V G Sbjct: 55 EKAVLTGTVVTPATVQYYGFKRNRLSFKIKQGDLVIAINFFNQPYLADKVELGKEVAVFG 114 Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVL 185 K + K + + ++ D ++ VY + G+S K I A L + Sbjct: 115 KWDQKKTSVTGMK--FLMSLEDD-----LQPVYHVVQGVSQAALIKAIKSAFDTNLLSEI 167 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 E I + L+QK EA +H P ++ A R+ ++EL Q+ L +++ Sbjct: 168 EENIPELLIQKYRLMGRQEAIRAMHFPADLPEYR---QALRRIKFEELFYFQMQLQVLKH 224 Query: 246 QFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 K E G+ I + K ++++ +PFS T +Q +++++IL+DM+ M R+LQGDVGS Sbjct: 225 ANKSETAGLAIAYDKKALEQVIAGLPFSLTGAQLNSLEEILKDMASGQHMNRLLQGDVGS 284 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKT++A +AM A AG Q+ +M P ILA+QHY+ + ++ + I+ M A + Sbjct: 285 GKTVIASLAMYATYTAGYQSALMVPTEILAEQHYQSLTNLF--PELSIAILKSGMKVAAK 342 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424 R AL IA G +I+GTHAL QD++QY+KL LVI DEQHRFGV+QR +K P VL Sbjct: 343 RSALAAIADGSVDMIVGTHALIQDAVQYHKLGLVITDEQHRFGVKQRRIFREKGENPDVL 402 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 +MTATPIPRTL +T+ G++D+S I + PAGRKPI T + ++ +V+ ++ +++G + Sbjct: 403 MMTATPIPRTLAITAYGEMDVSIIDQLPAGRKPIVTRWVKHQQLHDVLTWMRQEIAKGAQ 462 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTC 542 Y I P IEE + + ++ V L +F + IA++HG+M + DK+++M +FKN Sbjct: 463 VYVISPLIEESEALDLKNAVALEQELKNYFQGDARIALMHGKMKNEDKDAIMQAFKNQEI 522 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 LL++TTVIEVG++V +A+I++I +A+ FGL+QLHQLRGRVGRG + S +L+ +P ++ Sbjct: 523 DLLVSTTVIEVGVNVPNATIMLIMDADRFGLSQLHQLRGRVGRGHKQSYALLVANPK-TE 581 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662 R+ ++ T DGF++AE DLK R GEI G +QSG+P+F A +LE AR+ Sbjct: 582 TGKERMRIMTETSDGFVLAEADLKMRGSGEIFGTRQSGIPEFKTADLLEDYPILEEARRV 641 Query: 663 AKHILTQDPDLTSVRGQSI 681 A I +Q T R I Sbjct: 642 ASEIASQANWQTDQRWHKI 660 >gi|228992583|ref|ZP_04152510.1| ATP-dependent DNA helicase recG [Bacillus pseudomycoides DSM 12442] gi|228767217|gb|EEM15853.1| ATP-dependent DNA helicase recG [Bacillus pseudomycoides DSM 12442] Length = 685 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 232/681 (34%), Positives = 387/681 (56%), Gaps = 25/681 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G++ S L ++ ++ LL + P + D + ++E+ E VT Sbjct: 11 PVTDVKGIGEETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHEERVT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G + Q ++ ++ + G IT + F R K E +T+TGK Sbjct: 64 VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLKLDE--TVTITGKW 121 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188 + + I + H+ V +E VYS+ L+V ++ I +AL + E Sbjct: 122 DQHRQTISISELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGSSIEEM 177 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248 + LL + EA +H P +D + AR R Y+E Q+ + +RK + Sbjct: 178 LPDGLLGRYKLLPRYEALRALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQALRKMER 234 Query: 249 KEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 + G ++ K ++ +PF T +Q + +I++DM RM R+LQGDVGSGKT Sbjct: 235 ESSKGTKKDISMKELEEFTDALPFPLTGAQRRVVSEIIKDMQSPYRMNRLLQGDVGSGKT 294 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +VA IA+ AA A Q +M P ILA+QHY+ + + + + VE++T ++ A RR+ Sbjct: 295 VVAAIALYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFNMNVELLTSSVKGARRREV 354 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 L ++ G+ I++GTHAL QD + +++L LVI DEQHRFGV QR L +K +P VL MT Sbjct: 355 LAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 414 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T+ G++D+S I E PAGRK I+T + ++ V+ ++ +++G++AY Sbjct: 415 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLERVLGFVEKEVNKGRQAYV 474 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545 ICP IEE ++ + ++ ++ + L H+ + ++HGR+S +KE VM+ F ++L Sbjct: 475 ICPLIEESEKLDVQNAIDLHSMLMHHYQGKFQVGLMHGRLSSQEKEDVMEKFSENKVQIL 534 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+ P S+ Sbjct: 535 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGK 593 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAK 664 R+ ++ T DGF+++E+DL+ R G+ G KQSG+P+F +A +HD LE AR+DA Sbjct: 594 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETARQDAA 652 Query: 665 HILTQDPDLTSVRGQSIRILL 685 ++ + + + ++R+ L Sbjct: 653 VLVDSEAFWHNEQYAALRVYL 673 >gi|219854623|ref|YP_002471745.1| hypothetical protein CKR_1280 [Clostridium kluyveri NBRC 12016] gi|219568347|dbj|BAH06331.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 682 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 216/563 (38%), Positives = 335/563 (59%), Gaps = 19/563 (3%) Query: 113 LKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFK 172 +KN F + + GKI++ I +++P + + I +Y L +G++ ++ Sbjct: 103 MKNKFKINKVYRIMGKIERFNGSISIMNPTLVSNEVNSKKEDKIIPIYPLKSGITNNILI 162 Query: 173 KIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA 229 K+I + + + + LP WI ++K F S+ +A IH P ++ E A+ RL Sbjct: 163 KLISKVIHEVDIEENLPTWI----IKKYKFCSLNKAIKAIHKPGSIEELE---EAKRRLK 215 Query: 230 YDELLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288 + EL + + +L+++ + + GI + ++ + + + IP+ TKSQ I++IL D Sbjct: 216 FQELFSYSLKILMLKNYHSRNKKGIAFKIASELKE-LKKRIPYELTKSQNKVIREILLDE 274 Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348 ++ M R+LQGDVGSGKT+VA+IA+ V+ G QAV MAP ILA+QHYE KK+ Q+T Sbjct: 275 KMESPMNRLLQGDVGSGKTIVAIIAIFNVVKNGYQAVFMAPTEILAKQHYEECKKFLQDT 334 Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408 + ++++ G++ + +++ E + +G+ IIIGTHAL +D +++ + +V+ DEQHRFGV Sbjct: 335 GVNIQLLCGSVTERNKKILKEDLKYGKIDIIIGTHALIEDDVEFKNIGMVVTDEQHRFGV 394 Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468 QR KL K L+MTATPIPRTL L GD++IS I E P GRK I T Sbjct: 395 AQRSKLINKGKYVDTLVMTATPIPRTLSLCLHGDLNISIIDELPPGRKKIHTYYTDKKSK 454 Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMS 526 D V + + +G++ Y +CP +E+ + SV E ++ L E + I +++G+MS Sbjct: 455 DRVYKFAVEEIKKGRQVYVVCPLVEQNDNLHLSSVKEIYDKLKEKYFKDLEIGVLYGKMS 514 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 KE M+ FKNG K +I+TTVIEVG++V +A+++IIENAE FGLAQLHQLRGRVGRG Sbjct: 515 SSSKEETMNKFKNGEIKAIISTTVIEVGVNVPNAAVMIIENAERFGLAQLHQLRGRVGRG 574 Query: 587 EEISSCILLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644 E S CIL+ KN + R+ ++K++ DGF IAEEDLK R GEI G KQ G + Sbjct: 575 EYKSYCILIADI---KNDFVRRRMEIMKSSNDGFFIAEEDLKIRGSGEIFGFKQHGENEL 631 Query: 645 LIAQPELHDSLLEIARKDAKHIL 667 + + + ++A +AK L Sbjct: 632 IFSNLSEDIHIFKLANLEAKRFL 654 >gi|225869162|ref|YP_002745110.1| ATP-dependent DNA helicase [Streptococcus equi subsp. zooepidemicus] gi|225702438|emb|CAX00322.1| ATP-dependent DNA helicase [Streptococcus equi subsp. zooepidemicus] Length = 671 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 232/634 (36%), Positives = 368/634 (58%), Gaps = 25/634 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLL Y+P + D + + + E+ V +TG + S Q + ++ GE+ Sbjct: 31 DLLLYYPFRYEDFKSKSALELLDGEKAV-LTGRVVTPPSVQYYGFKRNRLSFKLKQGELV 89 Query: 103 L-LFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161 + + F+ + +L+ + + +++ + G+ + K + + + ++ VY Sbjct: 90 ISVSFFNQPYLLEKIVLD-QEVAIFGRWDQKKAALTGMKLLMTLEDD-------LQPVYH 141 Query: 162 LPTGLSVDLFKKIIVEALSR--LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 + G+S K I A L L E + + L+QK A +H P+ +D++ Sbjct: 142 VAQGISQPTLIKAIRSAFDSGALAQLEENLPEPLIQKYRLLPRQAAVYAMHFPKHMEDYK 201 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKE---IGIPINVEGKIAQKILRNIPFSPTKS 276 A R+ ++E Q+ L +++ K E + IP + + +A+KI +PFS T++ Sbjct: 202 ---QALRRIKFEEFFYFQMNLQVLKLANKAEGNGLAIPFHQQA-VAKKI-AALPFSLTRA 256 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q+ ++++IL DM+ M R+LQGDVGSGKT++A +AM AA AG Q+ +M P ILA+Q Sbjct: 257 QQRSLEEILADMASAAHMNRLLQGDVGSGKTVIASLAMYAAQTAGFQSALMVPTEILAEQ 316 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 HY+ + + + I ++T M A +R AL IA G +I+GTHAL QD++ Y+KL Sbjct: 317 HYDSLCQLFPDLSI--ALLTSGMKVAEKRTALSAIADGSVDMIVGTHALIQDTVTYHKLG 374 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 LVI DEQHRFGV QR +K P VL+MTATPIPRTL +T+ G++D+S I E PAGRK Sbjct: 375 LVITDEQHRFGVNQRRLFREKGNNPDVLMMTATPIPRTLAITAYGEMDVSIIDELPAGRK 434 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-- 514 PI T + ++D V+ +K L++G +AY I P IEE + + ++ V L ++F Sbjct: 435 PIITRWVKHQQLDSVLAWVKTELAKGAQAYVISPLIEESETLDLKNAVALEAELKDYFKA 494 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 ++S+A++HG+M DKE +M FK +L++TTVIEVG++V +A+I++I NA+ FGL+ Sbjct: 495 SASVALMHGKMKADDKEMIMQRFKAKEIDVLVSTTVIEVGVNVPNATIMLIMNADRFGLS 554 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG + S IL+ P + + R++++ T DGF++AE DLK R GEI Sbjct: 555 QLHQLRGRVGRGSKQSYAILVADPK-TDSGKERMTIMTTTNDGFVLAEADLKLRGSGEIF 613 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668 G +QSG+P+F A +LE AR+ A I+ Sbjct: 614 GTRQSGLPEFKTADIVEDYHILEEARRVAAEIVA 647 >gi|153954009|ref|YP_001394774.1| ATP-dependent DNA helicase RecG [Clostridium kluyveri DSM 555] gi|146346890|gb|EDK33426.1| Hypothetical protein CKL_1384 [Clostridium kluyveri DSM 555] Length = 679 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 216/563 (38%), Positives = 335/563 (59%), Gaps = 19/563 (3%) Query: 113 LKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFK 172 +KN F + + GKI++ I +++P + + I +Y L +G++ ++ Sbjct: 100 MKNKFKINKVYRIMGKIERFNGSISIMNPTLVSNEVNSKKEDKIIPIYPLKSGITNNILI 159 Query: 173 KIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA 229 K+I + + + + LP WI ++K F S+ +A IH P ++ E A+ RL Sbjct: 160 KLISKVIHEVDIEENLPTWI----IKKYKFCSLNKAIKAIHKPGSIEELE---EAKRRLK 212 Query: 230 YDELLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288 + EL + + +L+++ + + GI + ++ + + + IP+ TKSQ I++IL D Sbjct: 213 FQELFSYSLKILMLKNYHSRNKKGIAFKIASELKE-LKKRIPYELTKSQNKVIREILLDE 271 Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348 ++ M R+LQGDVGSGKT+VA+IA+ V+ G QAV MAP ILA+QHYE KK+ Q+T Sbjct: 272 KMESPMNRLLQGDVGSGKTIVAIIAIFNVVKNGYQAVFMAPTEILAKQHYEECKKFLQDT 331 Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408 + ++++ G++ + +++ E + +G+ IIIGTHAL +D +++ + +V+ DEQHRFGV Sbjct: 332 GVNIQLLCGSVTERNKKILKEDLKYGKIDIIIGTHALIEDDVEFKNIGMVVTDEQHRFGV 391 Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468 QR KL K L+MTATPIPRTL L GD++IS I E P GRK I T Sbjct: 392 AQRSKLINKGKYVDTLVMTATPIPRTLSLCLHGDLNISIIDELPPGRKKIHTYYTDKKSK 451 Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMS 526 D V + + +G++ Y +CP +E+ + SV E ++ L E + I +++G+MS Sbjct: 452 DRVYKFAVEEIKKGRQVYVVCPLVEQNDNLHLSSVKEIYDKLKEKYFKDLEIGVLYGKMS 511 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 KE M+ FKNG K +I+TTVIEVG++V +A+++IIENAE FGLAQLHQLRGRVGRG Sbjct: 512 SSSKEETMNKFKNGEIKAIISTTVIEVGVNVPNAAVMIIENAERFGLAQLHQLRGRVGRG 571 Query: 587 EEISSCILLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644 E S CIL+ KN + R+ ++K++ DGF IAEEDLK R GEI G KQ G + Sbjct: 572 EYKSYCILIADI---KNDFVRRRMEIMKSSNDGFFIAEEDLKIRGSGEIFGFKQHGENEL 628 Query: 645 LIAQPELHDSLLEIARKDAKHIL 667 + + + ++A +AK L Sbjct: 629 IFSNLSEDIHIFKLANLEAKRFL 651 >gi|292669654|ref|ZP_06603080.1| DNA helicase RecG [Selenomonas noxia ATCC 43541] gi|292648451|gb|EFF66423.1| DNA helicase RecG [Selenomonas noxia ATCC 43541] Length = 688 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 241/655 (36%), Positives = 359/655 (54%), Gaps = 40/655 (6%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 +S RGVG K S +++ DLL Y+P ++ D+ +I+++ T+ Sbjct: 7 ISKVRGVGVKKSAAFARL------GIRTVYDLLTYYPRAYEDQSSITRIADLRAGMRATV 60 Query: 73 TGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 G I Q + Q +RR + +L + DGTG + ++F ++ LK+ EGR+I +TGK Sbjct: 61 LGVIHQVTDRQ-TRRRGFTVLTALIGDGTGYMQAVWFNQR--FLKSKLREGRRILLTGKT 117 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEA------------VYSLPTGLSVDLFKKIIVE 177 N SQ +F L+ A +Y+ GL ++++ Sbjct: 118 DYAYN------GGGQLALSQITSFELLGARDHAESLLGILPIYAATEGLPQKQLRQMMEY 171 Query: 178 ALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL++ L E + + Q+ A+AF IH P++ ++ AR RLA++EL Sbjct: 172 ALAQSADKLTETLPPRIRQEYDLIGRADAFRRIHFPKREEELR---AARRRLAFEELYLI 228 Query: 237 QIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q LL ++K+ +E GI G +A ++L +PF T+ Q +I +DM M Sbjct: 229 QCGLLALKKRTAEEQEGIAHRPNGVLAARVLEALPFELTEDQAKVWGEIARDMESPLPMR 288 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT VAL+A+ E G Q +MAP ILA+QHY++++ I V + Sbjct: 289 RLVQGDVGSGKTAVALLALVKTTENGYQGALMAPTEILARQHYDYLQTLLTPLGIRVGFL 348 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G + + R + +A II+GTHAL QD + + L LV+ DEQHRFGV QR L Sbjct: 349 SGRLTKKERAEIDAALAAHTVDIIVGTHALIQDHVAFDALGLVVTDEQHRFGVAQRTALE 408 Query: 416 QKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 +K+ P VL+MTATPIPRT+ LT GD+D+S+I P GR+PI+T + ++ Sbjct: 409 KKSGGTPDVLVMTATPIPRTMTLTVYGDLDVSRIEHLPPGRRPIRTFLRDETARGKIYAF 468 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA--IIHGRMSDIDKES 532 ++ + G++AY +CP IE +ES+ S E + L IA ++HGRM +KE Sbjct: 469 VRREIESGRQAYVVCPLIEASEESDLPSAEEVYEELSRSIFRGIACGLLHGRMKSAEKEE 528 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 VM+ F KLL++TTVIEVG++V +ASI+++E+AE FGLAQLHQLRGRVGRG S C Sbjct: 529 VMNGFYANRIKLLVSTTVIEVGVNVPNASILVVEHAERFGLAQLHQLRGRVGRGSYDSYC 588 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 IL+ S RL V++ T DGF +AEEDL+ R G+ G Q G+ IA Sbjct: 589 ILI--AGRSAAPQERLQVIEQTSDGFRLAEEDLRLRGPGQFFGAMQHGLGDLKIA 641 >gi|332522488|ref|ZP_08398740.1| ATP-dependent DNA helicase RecG [Streptococcus porcinus str. Jelinkova 176] gi|332313752|gb|EGJ26737.1| ATP-dependent DNA helicase RecG [Streptococcus porcinus str. Jelinkova 176] Length = 671 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 241/682 (35%), Positives = 384/682 (56%), Gaps = 33/682 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L +PLS +G G K + K+ + +LL Y+P + D + E+ Sbjct: 3 LHSPLSELKGFGPKSAEKFQKL------DIFTIEELLLYYPFRYEDFKSKSVFDLQDGEK 56 Query: 69 IV----TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124 V +T Q+ F+ + R +KI +D + + F+ + + V + +++ Sbjct: 57 AVLKGKVVTPATVQYYGFK-RNRLSFKIKEDD---LVIAINFFNQPYLADKVELD-KEVA 111 Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--L 182 + GK + K + + ++ D ++ VY + G+S K I A L Sbjct: 112 IFGKWDQKKTSLTGMK--FLMSLEDD-----LQPVYHVAQGVSQTALIKAIKSAFDTNLL 164 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 + E I + L+QK EA +H P D A R+ ++EL Q+ L + Sbjct: 165 SEIEENIPELLVQKYRLMGRQEAIRAMHFP---ADLPEYRQALRRIKFEELFYFQMQLQV 221 Query: 243 MRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 ++ K G+ I + + ++++ ++PFS T +Q ++++IL+DM+ M R+LQGD Sbjct: 222 LKHANKSATSGLAIAYDQRALEQVIASLPFSLTGAQLKSLEEILKDMASGQHMNRLLQGD 281 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT++A +AM AA AG Q+ +M P ILA+QHY+ + ++ + I+ M Sbjct: 282 VGSGKTVIASLAMYAAYTAGYQSALMVPTEILAEQHYQSLTSLF--PELSIAILKSGMKA 339 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 A +R AL IA G +I+GTHAL QD++QY+KL LVI DEQHRFGV+QR +K P Sbjct: 340 AAKRSALTAIADGSVDMIVGTHALIQDAVQYHKLGLVITDEQHRFGVKQRRIFREKGENP 399 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPRTL +T+ G++D+S I + PAGRKPI T + ++D+V+ ++ +++ Sbjct: 400 DVLMMTATPIPRTLAITAYGEMDVSIIDQLPAGRKPIVTRWVKHQQLDDVLTWMRQEIAK 459 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKN 539 G + Y I P IEE + + ++ V L +F + IA++HG+M + DK+++M +FKN Sbjct: 460 GAQVYVISPLIEESEALDLKNAVALEQELKNYFQGDARIALMHGKMKNEDKDAIMQAFKN 519 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 LL++TTVIEVG++V +A+I++I +A+ FGL+QLHQLRGRVGRG + S +L+ +P Sbjct: 520 QEIDLLVSTTVIEVGVNVPNATIMLIMDADRFGLSQLHQLRGRVGRGHKQSYALLVANPK 579 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 ++ R+ ++ T DGF++AE DLK R GEI G +QSG+P+F IA +LE A Sbjct: 580 -TETGKERMRIMTETNDGFILAEADLKMRGSGEIFGTRQSGIPEFKIADLLEDYPILEEA 638 Query: 660 RKDAKHILTQDPDLTSVRGQSI 681 R+ A I +Q T R Q I Sbjct: 639 RRVASEIASQPNWQTDQRWQKI 660 >gi|87124312|ref|ZP_01080161.1| putative DNA helicase [Synechococcus sp. RS9917] gi|86167884|gb|EAQ69142.1| putative DNA helicase [Synechococcus sp. RS9917] Length = 856 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 236/690 (34%), Positives = 373/690 (54%), Gaps = 39/690 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL +GVG K + L+ + + Y+P ++D +I + Sbjct: 157 LDTPLGKVKGVGPKLAERLAALGLLLVRDLL------LYYPRDYVDYSALRRIEALQAGE 210 Query: 69 IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNV--------F 117 TI + + F + IL L D TG + + F + Sbjct: 211 TATIVASVRRCHGFTSPRNPNLSILELQLQDPTGRLKVTRFLAGRRFSSPAALHSQTRQY 270 Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-------IEAVYSLPTGLSVDL 170 G + V+G +K + P + + PL + VY L GL+ D Sbjct: 271 PAGATVAVSGLVKAGPYGLSFQDP--LIEVMESAQAPLRSRQIGRLLPVYPLTEGLTADR 328 Query: 171 FKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAY 230 ++ + L + PE + Q+ + ++A IH P D + AR RL + Sbjct: 329 LRRTVDAVLPLGRLWPEPLTVQQRQRLGLLTRSQALQAIHQP---PDRDSLQQARRRLVF 385 Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGK---IAQKILRNIPFSPTKSQESAIKDILQD 287 DE L Q+ L+L R ++ + G + + L +PF T +QE + +I D Sbjct: 386 DEFLLLQLGLMLRRAALRQRQAPALRALGARDGLVGRFLDELPFRFTAAQERVLAEIELD 445 Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347 +++ M R++QGDVGSGKT+VA+ A+ AVEAG Q MAP +LA+QHY + ++ Sbjct: 446 LARPEPMARLVQGDVGSGKTVVAIAALLKAVEAGWQGAFMAPTEVLAEQHYRSLCRWLIP 505 Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407 + VE++TG P+ RR+ L +A+GQ ++++GTHAL +D + + +L LV+VDEQHRFG Sbjct: 506 LNVSVELLTGATPRPVRRRLLTDLANGQLNVLVGTHALIEDPVDFSRLGLVVVDEQHRFG 565 Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467 V+QR +L K PH+L MTATPIPRTL L+ GD+D+S+I E P GR PIKT ++ + Sbjct: 566 VKQRNRLLGKGLQPHLLTMTATPIPRTLALSLHGDLDVSQIDELPPGRTPIKTRLLTASA 625 Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRM 525 DE ++ ++ G++AY + P +E+ ++ + RS VE L + + ++HGR+ Sbjct: 626 RDEAYALIREEVARGQRAYVVLPLVEDSEKLDLRSAVEVHRQLCDEVFPEFEVGLLHGRL 685 Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585 S +K++V+ +F G ++L++TTV+EVG+DV +AS+++I++A+ FGLAQLHQLRGRVGR Sbjct: 686 SSAEKQAVIHAFAEGRAQVLVSTTVVEVGVDVPEASVMVIDHADRFGLAQLHQLRGRVGR 745 Query: 586 GEEISSCILLYHPPLSKN--SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643 G S C+L+ S+N + RL VL + DGF IAE DL+ R G++LG +QSG+P Sbjct: 746 GAAASHCLLIND---SRNVLAKQRLEVLVRSNDGFEIAEMDLRLRGPGQVLGTRQSGLPD 802 Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDL 673 +A S+LE AR++A +++ DP L Sbjct: 803 LALASLADDGSVLEEAREEAAALISADPSL 832 >gi|300214416|gb|ADJ78832.1| ATP-dependent DNA helicase [Lactobacillus salivarius CECT 5713] Length = 678 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 238/668 (35%), Positives = 379/668 (56%), Gaps = 40/668 (5%) Query: 13 LSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 + RGVG K L+K+ +N DLL ++P + D + + EI+ + VT Sbjct: 9 VGVLRGVGPKKIQALNKLGVNT-------IEDLLTFYPFRYNDIAVK-NLEEINSQEKVT 60 Query: 72 ITGYISQHS---SFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 + G ++ F +K R +K+L+N +T F+ + + K V G+++ V G Sbjct: 61 LKGIVASEPVLVRFGRKKSRLNFKLLINHDVIGVT---FFNQPWISKQVT-TGQELAVYG 116 Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL----- 182 K L+ + + I + D VY + + K+++ +A Sbjct: 117 KYDALRQSLSGIK--IISRKTND-----FVGVYRSSKDIKESVVKQLVKQAYEEYNSYIR 169 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 V+PE I K + + + +H P K+ AR +DE + + L L Sbjct: 170 DVVPESIRI----KYHLENRKQMIHDMHFPSTKKE---ADSARRSAIFDEFFSFEAGLQL 222 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +++ K +G+ I + ++ ++ +PF TK+Q+ + +I DM N M R+LQGDV Sbjct: 223 LKRDNHKNMGLRIKYNNEKLKEFIKGLPFELTKAQKRVVNEICADMLSPNHMNRLLQGDV 282 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ- 361 GSGKT++A IAM A V AG QAV+MAP ILAQQH E + + I V ++T + Sbjct: 283 GSGKTIIAAIAMYATVTAGFQAVLMAPTEILAQQHAEKLANLFEQYGISVALMTSSSLSR 342 Query: 362 -AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 +R+ L+ + +G I+IGTHA+ QD+I+++ L L I DEQHRFGV QR L +K Sbjct: 343 VKVKRELLKHLKNGDIDIVIGTHAVIQDNIEFHNLGLAITDEQHRFGVNQRRILRKKGVN 402 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 P +L MTATPIPRTL +T+ G++D+S I E P GR+P+KT + ++ V E +K L Sbjct: 403 PEILAMTATPIPRTLAITTYGEMDVSIIDELPKGRQPVKTSWVKKKQVKNVFEFVKRQLE 462 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKN 539 G +AY I P +EE + + ++ E F E+F S +A++HG+M +KE M +FKN Sbjct: 463 LGTQAYIISPLVEESELLDLQNAEEVFEKAKEYFGSEKVALLHGKMDANEKEQAMQAFKN 522 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 +L++TTVIEVG+DV +A+++II +A+ FGLAQLHQLRGRVGRG + S CIL+ P Sbjct: 523 KEVSILVSTTVIEVGVDVPNATVMIILDADRFGLAQLHQLRGRVGRGSKESYCILVADPK 582 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 S+ R+ ++ T DGFLI+++DL+ R GE+LG KQSG+P+F + P ++ ++L++A Sbjct: 583 -SEYGKERMKIMTGTNDGFLISQKDLELRGPGEVLGKKQSGLPEFKVGDPVVNLNILQVA 641 Query: 660 RKDAKHIL 667 +++A +++ Sbjct: 642 QEEAHNVV 649 >gi|227890686|ref|ZP_04008491.1| ATP-dependent DNA helicase [Lactobacillus salivarius ATCC 11741] gi|227867624|gb|EEJ75045.1| ATP-dependent DNA helicase [Lactobacillus salivarius ATCC 11741] Length = 678 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 245/696 (35%), Positives = 388/696 (55%), Gaps = 58/696 (8%) Query: 13 LSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 + RGVG K L+K+ +N DLL ++P + D + + EI+ + VT Sbjct: 9 VGVLRGVGPKKIQALNKLGVNT-------IEDLLTFYPFRYNDIAVK-NLEEINSQEKVT 60 Query: 72 ITGYISQHS---SFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 + G ++ F +K R +K+L+N +T F+ + + K V G+++ V G Sbjct: 61 LKGIVASEPILVRFGRKKSRLNFKLLINHDVIGVT---FFNQPWISKQVT-TGQELAVYG 116 Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL----- 182 K L+ + + I + D VY + + K+++ +A Sbjct: 117 KYDALRQSLSGIK--IISRKTND-----FVGVYRSSEDIKESVVKQLVKQAYEEYNSYIR 169 Query: 183 PVLPEWIE--------KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234 V+PE I K ++ FPS +K D AR +DE Sbjct: 170 DVVPESIRIKYHLENRKQMIHDMHFPST----------KKEADL-----ARRSAIFDEFF 214 Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 + + L L+++ K +G+ I + ++ ++ +PF TK+Q+ + +I DM N M Sbjct: 215 SFEAGLQLLKRDNHKNMGLRIKYNNEKLKEFIKGLPFELTKAQKRVVNEICADMLSPNHM 274 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R+LQGDVGSGKT++A IAM A V AG QAV+MAP ILAQQH E + + I V + Sbjct: 275 NRLLQGDVGSGKTIIAAIAMYATVTAGLQAVLMAPTEILAQQHAEKLANLFEQYGISVAL 334 Query: 355 ITGNMPQ--AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 +T + +R+ L+ + +G I+IGTHA+ QD+I+++ L L I DEQHRFGV QR Sbjct: 335 MTSSSLSRVKVKRELLKHLKNGDIDIVIGTHAVIQDNIEFHNLGLAITDEQHRFGVNQRR 394 Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 L +K P +L MTATPIPRTL +T+ G++D+S I E P GR+P+KT + ++ V Sbjct: 395 ILRKKGVNPEILAMTATPIPRTLAITTYGEMDVSIIDELPKGRQPVKTSWVKKKQVKNVF 454 Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKE 531 E +K L G +AY I P +EE + + ++ E F E+F S +A++HG+M +KE Sbjct: 455 EFVKRQLELGTQAYIISPLVEESELLDLQNAEEVFEKAKEYFGSEKVALLHGKMDANEKE 514 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 M +FKN +L++TTVIEVG+DV +A+++II +A+ FGLAQLHQLRGRVGRG + S Sbjct: 515 QAMQAFKNKEVSILVSTTVIEVGVDVPNATVMIILDADRFGLAQLHQLRGRVGRGSKESY 574 Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 CIL+ P S+ R+ ++ T DGFLI+++DL+ R GE+LG KQSG+P+F + P + Sbjct: 575 CILVADPK-SEYGKERMKIMTETNDGFLISQKDLELRGPGEVLGKKQSGLPEFKVGDPVV 633 Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687 + ++L++A+++A H + P+ + R ++ ++ YL Sbjct: 634 NLNILQVAQEEA-HNVVFSPNFET-REENFELIKYL 667 >gi|198277587|ref|ZP_03210118.1| hypothetical protein BACPLE_03809 [Bacteroides plebeius DSM 17135] gi|198270085|gb|EDY94355.1| hypothetical protein BACPLE_03809 [Bacteroides plebeius DSM 17135] Length = 699 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 248/679 (36%), Positives = 378/679 (55%), Gaps = 44/679 (6%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + + L+K +N + DLL+Y P ++DR I EI + + G I Sbjct: 14 GVGPQRAAILNKELNIYSLR-----DLLYYFPYKYVDRSRLYYIHEIDGNMPYIQLRGRI 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 F ++R DGTG + L V+F+G K +TGK K + I Sbjct: 69 LSFEMFGEGRQRRLVGHFTDGTGVVDL------------VWFQGLKY-ITGKYKANEEYI 115 Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLP-TGLSVDLFKKIIVEALSRLPVLPEWIEKDL-- 193 + P +F+ +V P I+ L + + + + E + R + +EK + Sbjct: 116 VFGKPT-VFNGRINVAHPDIDPAQELTLSTMGLQPYYNT-TEKMKRTSLNSHALEKLMKN 173 Query: 194 ----LQKKSF-----PSIAEAFNI------IHNPRKAKDFEWTSPARERLAYDELLAGQI 238 LQK+SF PS+ A + ++N ++ E A+ RL ++EL Q+ Sbjct: 174 LFQALQKESFEETLSPSLIAAHQLMPLTDALYNIHFPQNPELLRKAQYRLKFEELFYVQL 233 Query: 239 ALLLMRKQFKKEI-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 +L K+ + + G+ G+I ++PF T +Q+ IK++ +DM +M R Sbjct: 234 NILRYTKERRNKFRGLVFERVGEIFNTFYAHHLPFQLTGAQKRVIKEMRRDMGSGRQMNR 293 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 +LQGDVGSGKTLVAL+ M A++ G QA +MAP ILA QHYE I+++ + VE++T Sbjct: 294 LLQGDVGSGKTLVALMTMLIALDNGFQACMMAPTEILATQHYETIRRFLNGMPVRVELLT 353 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 GN+ R L + G HI+IGTHA+ +D++ + L LV++DEQHRFGV QR KL Sbjct: 354 GNVKGKRRETILRDLLTGDVHILIGTHAVIEDTVNFSSLGLVVIDEQHRFGVAQRAKLWA 413 Query: 417 KAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 K T PHVL+MTATPIPRTL +T GD+D+S I E P GRKPI+T+ NR + E + Sbjct: 414 KNTRPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTIHQFDNRRKSMYEFM 473 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 + + EG++ Y + P I+E ++ + +++ E + + E F ++ +HG+M +KE M Sbjct: 474 RKQIQEGRQVYIVYPLIQESEKMDIKNLEEGYMHICEEFPEYKVSKVHGKMKPAEKEEEM 533 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F ++++ATTVIEVG++V +AS++ IENAE FGL+QLHQLRGRVGRG + S CIL Sbjct: 534 QRFLANETQIMVATTVIEVGVNVPNASVMAIENAERFGLSQLHQLRGRVGRGADQSYCIL 593 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHD 653 + L++ + R+ ++ T DGF IAE DLK R G++ G +QSG+ L IA Sbjct: 594 VTGYKLTEETRKRIEIMVQTNDGFEIAEADLKLRGPGDLEGTQQSGVAFDLKIADIAKDG 653 Query: 654 SLLEIARKDAKHILTQDPD 672 LL+ R+ A+ +L DP+ Sbjct: 654 QLLQYVREIAERLLDDDPE 672 >gi|73748952|ref|YP_308191.1| ATP-dependent DNA helicase RecG [Dehalococcoides sp. CBDB1] gi|73660668|emb|CAI83275.1| ATP-dependent DNA helicase RecG [Dehalococcoides sp. CBDB1] Length = 740 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 227/657 (34%), Positives = 367/657 (55%), Gaps = 33/657 (5%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLL+Y P+ +D KIS++ TI + Q + RR + +L D TG + Sbjct: 70 DLLYYFPNRHLDYSRLKKISQLEAGPEQTIIANVWQSKVNFMGGRRSTEAVLGDDTGNMR 129 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVY 160 ++F M++N+ R + ++G++ + R + P + + + ++ + VY Sbjct: 130 AVWF-NNPYMVRNLKPNAR-VVLSGRVSIFQGRPVFESPEWEELPDEADLIHTGRLVPVY 187 Query: 161 SLPTGLSVDLFKKIIVEALS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 L GL ++++ + P + +++ + L++ ++EA H P D E Sbjct: 188 PLTAGLHQRSLRRLMKNFIDISSPNISDFMPAETLKRTRLLPLSEAIRQAHFP---DDEE 244 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 + AR RLA+DEL Q+ +L +K++ ++ G +NV + + +PF T +Q Sbjct: 245 LKNAARNRLAFDELFILQLGVLAKKKRWHEQAGRALNVNIPDIDRFVSKLPFKLTDAQTK 304 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 + DI D+S+ M R+LQG+VGSGKT+VA+I++ A G Q MAP ILA+QH++ Sbjct: 305 CLADIKADISKGVPMSRLLQGEVGSGKTIVAVISLFTAAANGLQGAFMAPTEILAEQHFK 364 Query: 340 FIKK---------------YT----QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380 + + YT + + V ++ +M + + E+I G+ I I Sbjct: 365 SVTRLFASIARVSTLLDGIYTFEGLLDRPLKVALLISDMKGSQKDILKEKIKKGEVDIAI 424 Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440 GTHAL Q I++ L L ++DEQHRFGV+QR L K PH+L+MTATPIPRTL LT Sbjct: 425 GTHALIQKEIRFKSLGLAVIDEQHRFGVEQRSALRSKGLNPHILIMTATPIPRTLALTLY 484 Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500 GD+D+S I E P GR+ IKT + + + ++ + EG++A+ ICP +EE + Sbjct: 485 GDLDLSVIDELPPGRQSIKTRWLKPEQRNSAYTFIRKQIQEGRQAFIICPLVEESEVIQA 544 Query: 501 RSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 ++ + +L S +A++HGRM+ +KE++M F G +L++T VIEVGID+ Sbjct: 545 KAATAEYETLSREVFPESRVALLHGRMNASEKETIMRHFSEGEMDILVSTPVIEVGIDIP 604 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618 +A+++++E+A+ FGL+QLHQ RGRVGRG E S C+ L P S RLS++++T+DGF Sbjct: 605 NAAVMLVESADRFGLSQLHQFRGRVGRGTEQSYCMFLAENP-SLLGQERLSIIESTQDGF 663 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLT 674 +AEEDL+ R GE G +QSG+PK +A + D LLE ARK+A + DP+L+ Sbjct: 664 KLAEEDLRLRGPGEFFGTRQSGLPKLRMAS--ISDVGLLEQARKEATRLFELDPELS 718 >gi|284047837|ref|YP_003398176.1| ATP-dependent DNA helicase RecG [Acidaminococcus fermentans DSM 20731] gi|283952058|gb|ADB46861.1| ATP-dependent DNA helicase RecG [Acidaminococcus fermentans DSM 20731] Length = 687 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 243/664 (36%), Positives = 370/664 (55%), Gaps = 24/664 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHP--SSFIDRHYRPKISEISEE-R 68 P++ +G+G K +L N N DLL + P ++D + I E++ Sbjct: 6 PVTRLKGIGPKKALEFE------NINVVTIGDLLNHFPRQGCYLDYSHIRTIGELTTGGE 59 Query: 69 IVTITGYISQHSSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 + G I + ++ + + Y I + DGTG ++ F +T M + V+ G ++ V G Sbjct: 60 MQLFRGTIVRMNNRRSARNLKYATITIGDGTGFAEIVLFGAQTYMTR-VYHTGDEVLVIG 118 Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS-RLPVLP 186 K+ + + P I Y+L L+ + + + +AL+ LP Sbjct: 119 KVMPGRTAKSVTGASLSHVKEDGAEAPGILPTYALTGSLTQNQVRGAVRQALALARKELP 178 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + +L+ K F EA IH P+ + E AR+RL ++EL Q LL R + Sbjct: 179 ECLPEKILRAKQFLPRLEALENIHFPKSPELLE---KARQRLIFEELFFLQCGLLHHRVE 235 Query: 247 FKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 KK+ GI + G + +K+L N+ FS T SQ+ A ++I DM M R++QGDVGSG Sbjct: 236 IKKDSQGIKMARCGTLVRKVLDNLGFSLTDSQKKAWQEIDDDMQSPEPMNRLVQGDVGSG 295 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT +AL+A+A AVE G Q +MAP ILA+QHY+ ++K + I ++TG + RR Sbjct: 296 KTALALLALAKAVENGYQGCLMAPTEILAEQHYQEMQKVLEPAGIRTALLTGGLSAKTRR 355 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVL 424 + LE +A G ++GT+AL QD + ++ L L I DEQHRFGV QR KL K+ APHVL Sbjct: 356 QVLEGLADGSIQAVVGTYALIQDKVVFHSLALAITDEQHRFGVAQRAKLQAKSQYAPHVL 415 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 +MTATPIPRTL LT GD+D+S + P GRKP++T+ + V + + + EG + Sbjct: 416 VMTATPIPRTLALTVYGDLDVSLMKGLPPGRKPVRTLCYTEEKRPAVYQGMVHQIREGHQ 475 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTC 542 AY +CP IEE + + ++ E + L + I ++HGR+ +K++VM+SF Sbjct: 476 AYVVCPLIEESEGVDAKAAEELYEELTSTYLRGIPCGLLHGRLKPEEKDAVMESFARNET 535 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 K+LI TTV+EVG++V +A++++IE A+ FGLAQ+HQLRGRVGRG S C+LL S Sbjct: 536 KVLITTTVVEVGVNVPNATLMVIEGADRFGLAQMHQLRGRVGRGSAQSYCVLL---TAST 592 Query: 603 NSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 N T RL ++++ DGFL+AE+DL+ R G+ G++Q G+ IA L AR Sbjct: 593 NPVTLERLQIMRSCSDGFLLAEKDLELRGAGQFFGLRQHGLSDLYIADILRDTDTLVEAR 652 Query: 661 KDAK 664 K A+ Sbjct: 653 KAAQ 656 >gi|228998631|ref|ZP_04158218.1| ATP-dependent DNA helicase recG [Bacillus mycoides Rock3-17] gi|228761099|gb|EEM10058.1| ATP-dependent DNA helicase recG [Bacillus mycoides Rock3-17] Length = 682 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 232/681 (34%), Positives = 387/681 (56%), Gaps = 25/681 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G++ S L ++ ++ LL + P + D + ++E+ E VT Sbjct: 8 PVTDVKGIGEETSELLHEMGIHTVSH------LLEHFPYRYED-YAMKDLAEVKHEERVT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G + Q ++ ++ + G IT + F R K E +T+TGK Sbjct: 61 VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLKLDE--TVTITGKW 118 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188 + + I + H+ V +E VYS+ L+V ++ I +AL + E Sbjct: 119 DQHRQTISISELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGSSIEEM 174 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248 + LL + EA +H P +D + AR R Y+E Q+ + +RK + Sbjct: 175 LPDGLLGRYKLLPRYEALRALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQALRKMER 231 Query: 249 KEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 + G ++ K ++ +PF T +Q + +I++DM RM R+LQGDVGSGKT Sbjct: 232 ESSKGTKKDISMKELEEFTDALPFPLTGAQRRVVSEIIKDMQSPYRMNRLLQGDVGSGKT 291 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +VA IA+ AA A Q +M P ILA+QHY+ + + + + VE++T ++ A RR+ Sbjct: 292 VVAAIALYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFNMNVELLTSSVKGARRREV 351 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 L ++ G+ I++GTHAL QD + +++L LVI DEQHRFGV QR L +K +P VL MT Sbjct: 352 LAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 411 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T+ G++D+S I E PAGRK I+T + ++ V+ ++ +++G++AY Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLERVLGFVEKEVNKGRQAYV 471 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545 ICP IEE ++ + ++ ++ + L H+ + ++HGR+S +KE VM+ F ++L Sbjct: 472 ICPLIEESEKLDVQNAIDLHSMLMHHYQGKFQVGLMHGRLSSQEKEDVMEKFSENKVQIL 531 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+ P S+ Sbjct: 532 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGK 590 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAK 664 R+ ++ T DGF+++E+DL+ R G+ G KQSG+P+F +A +HD LE AR+DA Sbjct: 591 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETARQDAA 649 Query: 665 HILTQDPDLTSVRGQSIRILL 685 ++ + + + ++R+ L Sbjct: 650 VLVDSEAFWHNEQYAALRVYL 670 >gi|308173550|ref|YP_003920255.1| branch migrating ATP-dependent DNA helicase [Bacillus amyloliquefaciens DSM 7] gi|307606414|emb|CBI42785.1| branch migrating ATP-dependent DNA helicase involved in DNA recombination and repair [Bacillus amyloliquefaciens DSM 7] Length = 682 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 231/637 (36%), Positives = 365/637 (57%), Gaps = 23/637 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSF----QLQKRRPYKILLNDGT 98 DLL Y P + D R + E+ E VT+ G + S + + R +++L+ G Sbjct: 33 DLLNYFPYRYDDYELR-DLEEVKHEERVTVEGKVHSEPSLTYYGKKRNRLTFRVLV--GN 89 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 IT + F R LK G +T++GK K + I + N IE Sbjct: 90 YLITAVCFNRP--YLKKKLTLGSVVTISGKWDKHRQTISVQE----LKNGPHQEDKSIEP 143 Query: 159 VYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 VYS+ ++V + ++ I EAL L + + + + L P +A +H P + Sbjct: 144 VYSVKENVTVKMMRRFIKEALKHHLDNIADPLPEKLRISYKLPDYKQALQTMHQPETRES 203 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKS 276 + AR R Y+E L Q+ + RK +++ GI + ++PFS T + Sbjct: 204 LQ---QARRRFVYEEFLLFQLKMQAFRKAEREQSKGISHVFPAEKLAAFTASLPFSLTNA 260 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q +++I D++ RM R+LQGDVGSGKT VA IA+ AA+ +G Q +M P ILA+Q Sbjct: 261 QMRVLREITADLTSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQ 320 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 H + + N + + ++T ++ RR+ LER+A G+ I++GTHAL QD +++ L Sbjct: 321 HADSLVSLFANEDVNIALLTSSVKGKRRRELLERLALGEIDILVGTHALIQDEVEFKALS 380 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 LVI DEQHRFGV QR KL K P VL MTATPIPRTL +T G++D+S I E PAGRK Sbjct: 381 LVITDEQHRFGVDQRKKLRNKGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRK 440 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 I+T + + ++ ++ ++ L +G++AY ICP IEE + + ++ ++ +N L E + Sbjct: 441 QIETYWVKHDMLERILAFIEKELKQGRQAYIICPLIEESDKLDVQNAIDVYNMLSEVYRG 500 Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 ++ ++HG++ +K+ VM F C++L++TTV+EVG++V +A+I++I +A+ FGL+ Sbjct: 501 KWNVGLMHGKLHSDEKDQVMREFSANQCQVLVSTTVVEVGVNVPNATIMVIYDADRFGLS 560 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG+ S CIL+ P S+ R+ ++ T DGF ++E+DL+ R G+ Sbjct: 561 QLHQLRGRVGRGDHQSFCILMADPK-SETGKERMRIMSETNDGFELSEKDLELRGPGDFF 619 Query: 635 GIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQD 670 G KQSGMP+F +A +HD LE AR+DA ++++ + Sbjct: 620 GKKQSGMPEFKVADM-VHDYRALETARQDAANLVSSE 655 >gi|195977526|ref|YP_002122770.1| ATP-dependent DNA helicase RecG [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974231|gb|ACG61757.1| ATP-dependent DNA helicase RecG [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 671 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 233/634 (36%), Positives = 367/634 (57%), Gaps = 25/634 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLL Y+P + D + + + E+ V +TG + S Q + ++ GE+ Sbjct: 31 DLLLYYPFRYEDFKSKSALELLDGEKAV-LTGRVVTPPSVQYYGFKRNRLSFKLKQGELV 89 Query: 103 L-LFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161 + + F+ + +L + + +++ + G+ + K + + + ++ VY Sbjct: 90 ISVSFFNQPYLLDKIVLD-QEVAIFGRWDQRKAALTGMKLLMTLEDD-------LQPVYH 141 Query: 162 LPTGLSVDLFKKIIVEALSR--LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 + G+S K I A L L E + + L+QK A +H P+ +D++ Sbjct: 142 VAQGISQPALIKAIRSAFDSGALAQLEENLPEPLIQKYRLLPRQAAVYAMHFPKHMEDYK 201 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKE---IGIPINVEGKIAQKILRNIPFSPTKS 276 A R+ ++E Q+ L +++ K E + IP + + +A+KI +PFS T++ Sbjct: 202 ---QALRRIKFEEFFYFQMNLQVLKLANKAEGNGLAIPFHQQA-VAKKI-AALPFSLTRA 256 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q+ ++++IL DM+ M R+LQGDVGSGKT++A +AM AA AG Q+ +M P ILA+Q Sbjct: 257 QQRSLEEILADMTSGAHMNRLLQGDVGSGKTVIASLAMYAAQTAGFQSALMVPTEILAEQ 316 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 HY+ + + + I ++T M A +R AL IA G +I+GTHAL QD++ Y+KL Sbjct: 317 HYDSLCQLFPDLSI--ALLTSGMKVAEKRTALSAIADGSVDMIVGTHALIQDTVTYHKLG 374 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 LVI DEQHRFGV QR +K P VL+MTATPIPRTL +T+ G++D+S I E PAGRK Sbjct: 375 LVITDEQHRFGVNQRRLFREKGNNPDVLMMTATPIPRTLAITAYGEMDVSIIDELPAGRK 434 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-- 514 PI T + ++D V+ +K L++G +AY I P IEE + + ++ V L ++F Sbjct: 435 PIITRWVKHQQLDSVLAWVKTELAKGAQAYVISPLIEESETLDLKNAVALEAELKDYFKA 494 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 ++SIA++HG+M DKE +M FK +L++TTVIEVG++V +A+I++I NA+ FGL+ Sbjct: 495 SASIALMHGKMKADDKEMIMQRFKAKEIDVLVSTTVIEVGVNVPNATIMLIMNADRFGLS 554 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG + S IL+ P + + R++++ T DGF++AE DLK R GEI Sbjct: 555 QLHQLRGRVGRGSKQSYAILVADPK-TDSGKERMTIMTTTNDGFVLAEADLKLRGSGEIF 613 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668 G +QSG+P+F A +LE AR+ A I+ Sbjct: 614 GTRQSGLPEFKTADIVEDYHILEEARRVATEIVA 647 >gi|315658488|ref|ZP_07911360.1| DNA helicase RecG [Staphylococcus lugdunensis M23590] gi|315496817|gb|EFU85140.1| DNA helicase RecG [Staphylococcus lugdunensis M23590] Length = 681 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 225/659 (34%), Positives = 368/659 (55%), Gaps = 19/659 (2%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS +G+G K L+++ N DL+ Y P+ + D +S ++ +VT Sbjct: 12 PLSHIKGLGPKRIAILNEL------NIYSVGDLVLYLPTRYEDNTV-VDLSTAEDQTMVT 64 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + R K+ ++ I + + LKN +++TV GK + Sbjct: 65 VEGEVYSMPTVAFFGRNKSKLTIHLMINNIAVKCVFFNQPYLKNKIALNQRVTVKGKWNR 124 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191 K I + + +F N +E +Y + G+ + +I EAL R + EW+ + Sbjct: 125 AKQEI---NGNRMFFNQSSSKQDELEPIYRIKDGIKQKNMRDMIREAL-RDVTIHEWLSE 180 Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKE 250 DL K S+ I+H+P KD AR A+ EL ++ + L R + + Sbjct: 181 DLKAKYKLESLESTIKILHHP---KDKAALLRARRTYAFTELFMFELRMQWLNRLEKAAD 237 Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310 I IN + + + + +PF T +Q+ ++ +I +D+ RM R+LQGDVGSGKT+VA Sbjct: 238 NAIEINYDLRQVKDFIDVLPFDLTDAQKQSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVA 297 Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370 I M A AG Q+ +M P ILA+QH E + K ++ V ++TG++ R+ LE+ Sbjct: 298 AICMYALKTAGYQSALMVPTEILAEQHAESLVKLF-GERMNVALLTGSVKGKKRQLLLEQ 356 Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430 +A G +IGTHAL Q+ +Q+ + LVI DEQHRFGV QR L +K +VL MTATP Sbjct: 357 LAQGTIDCVIGTHALIQEDVQFNNIGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATP 416 Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490 IPRTL ++ G++D+S I + P GRKPIKT + ++V+ ++ L +G++AY ICP Sbjct: 417 IPRTLAISVFGEMDVSSIKQLPKGRKPIKTSWAKHEQYEQVLHQMTSELQKGRQAYVICP 476 Query: 491 QIEEKKE-SNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548 IE + + ++VV + SL ++ + + ++HG++S DK+ VM+ F +L++T Sbjct: 477 LIESSEHLEDVQNVVAIYESLQHYYGAKRVGLLHGKLSTEDKDDVMNQFSCHQIDILVST 536 Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608 TV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E S C+L+ P ++ R+ Sbjct: 537 TVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIERM 595 Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 +++ T DGF ++E DL+ R G+ G+KQSG+P F++A +LE+AR +A ++ Sbjct: 596 TIMTQTNDGFELSERDLEMRGPGDFFGVKQSGLPDFMVANVVEDYRMLEVARDEASELI 654 >gi|330996640|ref|ZP_08320518.1| ATP-dependent DNA helicase RecG [Paraprevotella xylaniphila YIT 11841] gi|329572712|gb|EGG54345.1| ATP-dependent DNA helicase RecG [Paraprevotella xylaniphila YIT 11841] Length = 698 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 236/643 (36%), Positives = 366/643 (56%), Gaps = 20/643 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101 DLL+ P IDR I E++ + V I G I + ++R DG G + Sbjct: 34 DLLYTFPYKHIDRTRLYYIHELTADMPYVQIRGQILSFDTEGEGRKRRLVAHFTDGQGVV 93 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161 L++F + + + + V G+ RI + HP + +N ++ Y+ Sbjct: 94 DLIWF-NGIKYILSAYKTRTDYIVFGRPSVFNGRINIAHPDVDKADELRLNTMGLQPYYT 152 Query: 162 LP-----TGL---SVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213 GL S++ F + E L +PE + L+ + S+ EA +H P Sbjct: 153 TTDKMKRAGLNSRSIEHFTATLFERLD--AEIPETLPPYLVSALNLVSLDEALRHVHYPT 210 Query: 214 KAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEIGIPINVEGKIAQKIL-RNIPF 271 A+D A+ RL ++EL Q+ ++ R++ +K G G++ +N+PF Sbjct: 211 SAEDLR---KAQFRLKFEELFYIQLNIIKYARERRQKYRGYVFARVGELFHTFYEKNLPF 267 Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331 T +Q+ I++I QDM +M R+LQGDVGSGKTLVAL+++ A++ G QA IMAP Sbjct: 268 ELTGAQKRVIREIRQDMGSGRQMNRLLQGDVGSGKTLVALMSILIALDNGFQACIMAPTE 327 Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391 ILA+QHY + + VE++TG + R+ L+ + G+ I++GTHA+ +D++ Sbjct: 328 ILAEQHYVTFQNLLSGMPVRVELLTGTVKGKRRQAVLDGLKDGEVRILVGTHAVLEDTVL 387 Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + L +V++DEQHRFGV QR +L K + PHVL+MTATPIPRTL +T GD+D+S I E Sbjct: 388 FKSLGMVVIDEQHRFGVAQRARLWAKNSNPPHVLVMTATPIPRTLAMTLYGDLDVSVIDE 447 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P GRKPI+TV NR + + L+ L+EG++AY + P I+E ++ + +++ E + L Sbjct: 448 LPPGRKPIQTVHQFDNRRESLYRGLRSQLNEGRQAYVVYPLIKESEKMDIKNLEEGYEQL 507 Query: 511 HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 I+ +HG+M +KE+ M F +G ++L+ATTVIEVG++V +AS+++IENAE Sbjct: 508 CRDLPEYKISRVHGKMKAAEKEAEMQDFISGKTQILVATTVIEVGVNVPNASVMVIENAE 567 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629 FGLAQLHQLRGRVGRG + S CIL+ LS ++ R+ ++ T DGF IAE DLK R Sbjct: 568 RFGLAQLHQLRGRVGRGADQSYCILVTKYQLSADTRKRIQIMTETNDGFEIAEADLKLRG 627 Query: 630 EGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKHILTQDP 671 G++ G +QSG+ L +A +L++AR+ A+ +L DP Sbjct: 628 PGDLEGTQQSGVSFTLRLANLARDGQVLQLARETAEKVLDDDP 670 >gi|289809908|ref|ZP_06540537.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 562 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 214/520 (41%), Positives = 313/520 (60%), Gaps = 14/520 (2%) Query: 159 VYSLPTGLSVDLFKKIIVEALSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPR--- 213 VY G+ +K+ +AL L + E + +L Q S+ EA +H P Sbjct: 20 VYPTTEGVKQATLRKLTDQALELLDTCAIAELLPPELAQ--GMMSLPEALRTLHRPPPTL 77 Query: 214 KAKDFEWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272 + D E PA+ RL +ELLA +++L +R ++ P++ + K+L ++PF Sbjct: 78 QLADLETGKHPAQRRLILEELLAHNLSMLALRAGAQRYHTQPLSTNNILKDKLLASLPFK 137 Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332 PT +Q + +I +DM+ M+R++QGDVGSGKTLVA +A A+ G Q +MAP + Sbjct: 138 PTSAQARVVAEIERDMALDVPMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTEL 197 Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392 LA+QH + + + + V + G R+ E IA GQ +I+GTHA+FQ+ +Q+ Sbjct: 198 LAEQHANNFRNWFEPLGVEVGWLAGKQKGKARQAQQEAIASGQVQMIVGTHAIFQEQVQF 257 Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKI 448 L LVI+DEQHRFGV QRL L +K PH L+MTATPIPRTL +T+ D+D S I Sbjct: 258 NGLALVIIDEQHRFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVI 317 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 E P GR P+ TV IP R E+I+R++ +EG++AYW+C IEE ++ + Sbjct: 318 DELPPGRTPVTTVAIPDTRRHEIIDRVRNACTTEGRQAYWVCTLIEESDLLEAQAAEATW 377 Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 L +I ++HGRM +K++VM +FK G LL+ATTVIEVG+DV +AS++IIE Sbjct: 378 EELKLALPELNIGLVHGRMKPAEKQAVMQAFKQGELHLLVATTVIEVGVDVPNASLMIIE 437 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626 N E GLAQLHQLRGRVGRG S C+LLY PLSK + RL VL+++ DGF+IA++DL+ Sbjct: 438 NPERLGLAQLHQLRGRVGRGAVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLE 497 Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666 R GE+LG +Q+G +F +A +++ ++ A+HI Sbjct: 498 IRGPGELLGTRQTGNAEFKVADLLRDQAMIPEVQRIARHI 537 >gi|328911691|gb|AEB63287.1| branch migrating ATP-dependent DNA helicase involved in DNA recombination and repair [Bacillus amyloliquefaciens LL3] Length = 682 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 230/637 (36%), Positives = 365/637 (57%), Gaps = 23/637 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSF----QLQKRRPYKILLNDGT 98 DLL Y P + D R + E+ E VT+ G + S + + R +++L+ G Sbjct: 33 DLLNYFPYRYDDYELR-DLEEVKHEERVTVEGKVHSEPSLTYYGKKRNRLTFRVLV--GN 89 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 IT + F R LK G +T++GK K + + + N IE Sbjct: 90 YLITAVCFNRP--YLKKKLTLGSVVTISGKWDKHRQTVSVQE----LKNGPHQEDKSIEP 143 Query: 159 VYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 VYS+ ++V + ++ I EAL L + + + + L P +A +H P + Sbjct: 144 VYSVKENVTVKMMRRFIKEALKHHLDNIADPLPEKLRISYKLPDYKQALQTMHQPETRES 203 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKS 276 + AR R Y+E L Q+ + RK +++ GI + ++PFS T + Sbjct: 204 LQ---QARRRFVYEEFLLFQLKMQAFRKAEREQSKGISHVFPAEKLAAFTASLPFSLTNA 260 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q +++I D++ RM R+LQGDVGSGKT VA IA+ AA+ +G Q +M P ILA+Q Sbjct: 261 QMRVLREITADLTSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQ 320 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 H + + N + + ++T ++ RR+ LER+A G+ I++GTHAL QD +++ L Sbjct: 321 HADSLVSLFANEDVNIALLTSSVKGKRRRELLERLALGEIDILVGTHALIQDEVEFKALS 380 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 LVI DEQHRFGV QR KL K P VL MTATPIPRTL +T G++D+S I E PAGRK Sbjct: 381 LVITDEQHRFGVDQRKKLRNKGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRK 440 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 I+T + + ++ ++ ++ L +G++AY ICP IEE + + ++ ++ +N L E + Sbjct: 441 QIETYWVKHDMLERILAFIEKELKQGRQAYIICPLIEESDKLDVQNAIDVYNMLSEVYRG 500 Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 ++ ++HG++ +K+ VM F C++L++TTV+EVG++V +A+I++I +A+ FGL+ Sbjct: 501 KWNVGLMHGKLHSDEKDQVMREFSANQCQVLVSTTVVEVGVNVPNATIMVIYDADRFGLS 560 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG+ S CIL+ P S+ R+ ++ T DGF ++E+DL+ R G+ Sbjct: 561 QLHQLRGRVGRGDHQSFCILMADPK-SETGKERMRIMSETNDGFELSEKDLELRGPGDFF 619 Query: 635 GIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQD 670 G KQSGMP+F +A +HD LE AR+DA ++++ + Sbjct: 620 GKKQSGMPEFKVADM-VHDYRALETARQDAANLVSSE 655 >gi|253682695|ref|ZP_04863492.1| ATP-dependent DNA helicase RecG [Clostridium botulinum D str. 1873] gi|253562407|gb|EES91859.1| ATP-dependent DNA helicase RecG [Clostridium botulinum D str. 1873] Length = 673 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 243/662 (36%), Positives = 375/662 (56%), Gaps = 36/662 (5%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 +++ +G+G K L+K CG + +DLL Y P + Y I+ + + V I Sbjct: 7 VASLKGIGPKTQELLNK---CG---IYKILDLLLYFPRDYEKIQYCNDINNLKDADKVII 60 Query: 73 TGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 + Q KR ++ E +F +K +KN F + + GK+K Sbjct: 61 KAKVKQIKKDIYVKRNMIISSVIFTKNNLEFEGKWFNQK--YIKNKFKLNEECIILGKVK 118 Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190 +++I +++P+ + + + +N I YSL L+ + F K I LS + ++ E I Sbjct: 119 MDRHKISIINPNILENTEKLLN---ITPKYSLKGNLTNNFFNKTINYILSNITIV-ENIP 174 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 K++L K S+ +A IHNP++ E A +RL + EL + LL++ KQ+KK Sbjct: 175 KNILDKYDLLSLDKAIRSIHNPKQE---EELLNAMKRLKFQELFTYSLKLLML-KQYKKS 230 Query: 251 IGIPINVEGKIAQ--KILR-NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 GI KIA+ KIL+ ++PF+ T +Q +++IL D + M R++QGDVGSGKT Sbjct: 231 KGIAF----KIAEELKILKESLPFTLTDAQNKVVREILIDEKRDRPMNRLVQGDVGSGKT 286 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +V+LIA+ V+ G Q V+MAP ILA QHY+ + + +E++TG+ + K+ Sbjct: 287 IVSLIALFNVVKNGYQGVLMAPTEILANQHYQQAINLLEKFNVRIELLTGSTKKKDIIKS 346 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 ++ G+ I+IGTHAL +D +++ L +V+ DEQHRFGV+QR K+ K VL+MT Sbjct: 347 --KLKSGEIDIVIGTHALLEDDVEFNNLGMVVTDEQHRFGVKQRSKIYNKNNNIDVLVMT 404 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL L+ GD+DIS I + P GRK I T + N+ + V + G + Y Sbjct: 405 ATPIPRTLALSLYGDLDISTIDKLPPGRKKIDTFSVRENKRNRVYNFALKEIQNGAQVYI 464 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545 +CP +E +E N +SV + L + + + + I+HG+M KE +M+ FK G K+L Sbjct: 465 VCPFVEANEELNIKSVEKLHMELKDEYFNDVEVEILHGKMPSKSKEEIMERFKMGKTKVL 524 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 I+TTVIEVG++V +A+++IIE+AE FGL+QLHQLRGRVGRG + S CIL+ + N+Y Sbjct: 525 ISTTVIEVGVNVPNATLMIIESAERFGLSQLHQLRGRVGRGNKKSYCILITNS----NNY 580 Query: 606 ---TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662 R++++ + DGF IAEEDLK R GEI G Q G F+I+ + A K+ Sbjct: 581 ITKQRMNIITKSNDGFFIAEEDLKLRGSGEIFGFNQHGENGFIISDIINDYRIFRNANKE 640 Query: 663 AK 664 AK Sbjct: 641 AK 642 >gi|299532849|ref|ZP_07046236.1| ATP-dependent DNA helicase RecG [Comamonas testosteroni S44] gi|298719073|gb|EFI60043.1| ATP-dependent DNA helicase RecG [Comamonas testosteroni S44] Length = 701 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 234/666 (35%), Positives = 357/666 (53%), Gaps = 33/666 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL + P + D ++ + V I ++ HS QL+ RR K+ ++DG+ Sbjct: 24 TRDIDLALHLPLRYEDETRIVRLKNARDGETVQIEATVT-HSEVQLRPRRMLKVTVDDGS 82 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--DVNFPLI 156 L FF K + G ++ + G++K M+HP + + P+ Sbjct: 83 STCLLTFFSFYPSQQKTMA-PGARLRIRGEVKGGFWGRQMMHPAFRVAGGELPTALTPVY 141 Query: 157 EAVYSLPTG-----LSVDLFKKIIVEAL--SRLPVLPEWIEKDLLQKKSFPSIAEAFNII 209 A SLP ++ L + + E L + P + ++ ++ LQ + A + Sbjct: 142 PATASLPQAYLRRAIASALLRADLSETLPPGQSPPIAQFYGQNGLQPAY--DLRNALIFL 199 Query: 210 HNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM---RKQFKKEIGIPINVEGKIA 262 H+P + + PA +RL +ELLA Q++ R + + + P + Sbjct: 200 HHPTPDVALVTLEDHSHPAWQRLKAEELLAQQLSQYEAKRERARLRAPVLRPQAGMADLT 259 Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ L +PF T +Q+ + +I DM ++ M R+LQGDVGSGKT+VA ++ A +EAG Sbjct: 260 QQFLAQLPFGLTGAQQRVVGEIRADMERRIPMHRLLQGDVGSGKTVVAALSAVACIEAGW 319 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQII----VEIITGNMPQAHRRKALERIAHGQAHI 378 Q +MAP ILA+QH+ + + + V + G + R L + G+A + Sbjct: 320 QCALMAPTEILAEQHFGKLVGWLEPILAPLGKKVAWLAGAQKKKERAAMLALVESGEAAL 379 Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRT 434 ++GTHA+ Q+ +Q+ L L ++DEQHRFGV QRL L QK A PH+L+M+ATPIPRT Sbjct: 380 VVGTHAVIQEQVQFKNLALAVIDEQHRFGVAQRLALRQKLAATGMEPHLLMMSATPIPRT 439 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I E P GR PI T +I +R DEVIER+ ++ G++ YW+CP IEE Sbjct: 440 LAMSYYADLDVSTIDELPPGRTPIVTKLISDSRKDEVIERIGAQVASGRQVYWVCPLIEE 499 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + + + L E + ++H RM +K++VM+ F G +L++TTVIEV Sbjct: 500 SEALDLSNATATHEYLSEMLPGVMVGLLHSRMPTAEKKAVMELFSAGVMGVLVSTTVIEV 559 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY----HPPLSKNSYTRLS 609 G+DV +AS+++IE++E FGL+QLHQLRGRVGRG S+C+LLY + LS RL Sbjct: 560 GVDVPNASLMVIEHSERFGLSQLHQLRGRVGRGAAASACVLLYSVNDNGRLSDTGKERLR 619 Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669 + T DGF IA DL+ R GE LG +QSG P A E LL+ AR+ A +L Q Sbjct: 620 AMAETNDGFEIARRDLEIRGPGEFLGARQSGAPMLRFADLEQDVMLLDWARELAPLMLEQ 679 Query: 670 DPDLTS 675 P L + Sbjct: 680 FPALAA 685 >gi|259503534|ref|ZP_05746436.1| DNA helicase RecG [Lactobacillus antri DSM 16041] gi|259168612|gb|EEW53107.1| DNA helicase RecG [Lactobacillus antri DSM 16041] Length = 678 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 232/676 (34%), Positives = 361/676 (53%), Gaps = 40/676 (5%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID----------- 54 + L P++ +GVG K + L+ + DLL Y+PS + D Sbjct: 1 MKSLQDPVAALKGVGPKRAADLATL------GIDTVEDLLTYYPSRYDDVTPADLDNVQD 54 Query: 55 RHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLK 114 R + E +++ GY SF+LQ + ++ F+ + + K Sbjct: 55 RQRITTQGTVVSEPLLSHFGYRRSRLSFRLQV-----------GPRVIMVTFFNQAYLAK 103 Query: 115 NVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKI 174 V G+ +TV GK + ++ ++ +QD A+Y + + + + Sbjct: 104 RVAL-GQTVTVMGKWDAQRAQVTA--NKFLAAGAQDSGDS--GAIYPVNKHIRQATLRGL 158 Query: 175 IVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233 I +A V+P + L Q +H P ++ AR AY+E Sbjct: 159 IRQAFDEYQNVIPTLLPAPLRQHYRLLDRRTMIKALHFP---ENVGQAKAARRTAAYEEF 215 Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 Q+ L +R+ + G PI + + I F T +Q+ + +I +D+ + Sbjct: 216 FLFQLRLQAIRQARRHADGNPILYHNDELKNFIAGIGFELTGAQKRVVNEICRDLRAPYQ 275 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R+LQGDVGSGKT+VA IA+ A + AG QA +MAP ILA QH E + + T + V Sbjct: 276 MNRLLQGDVGSGKTIVAAIAIYATITAGYQAALMAPTEILAAQHAEKLARTFAGTHVHVG 335 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++TG++ R+ + I G+ +++IGTHAL QD ++Y L LVI DEQHRFGV QR Sbjct: 336 LLTGSLTAKQHRELVGAIKRGEINLVIGTHALIQDDVEYANLGLVITDEQHRFGVNQRQL 395 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 L +K P VL MTATPIPRTL +T+ G++D+S I E PAGRKPI+T + +N+ E + Sbjct: 396 LREKGDQPDVLAMTATPIPRTLAITAYGEMDVSVIDELPAGRKPIETCWLKLNQQSEALH 455 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKE 531 L+ L+ G + Y + P IEE + ++ + +N L E+F + ++HGR+S +K+ Sbjct: 456 FLRDQLAGGAQVYIVSPLIEESAALDVQNATDLYNELAEYFQPRYQVGLLHGRLSAEEKD 515 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 VM F+ G +LL++TTVIEVG+D +A+++++ NA+ FGLAQLHQLRGRVGRG+ S Sbjct: 516 RVMHKFQQGEYQLLVSTTVIEVGVDNPNATVMMVYNADRFGLAQLHQLRGRVGRGDRQSY 575 Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 C+LL P + R+ + T DGF++A+ DL+ R G++LG KQSGMP+F + P Sbjct: 576 CLLLADPKTDEGQ-ERMKTMVETNDGFVVAQRDLELRGSGDVLGNKQSGMPEFKVGDPVG 634 Query: 652 HDSLLEIARKDAKHIL 667 +L+IAR+DA +L Sbjct: 635 DLKMLQIARQDATDLL 650 >gi|304383222|ref|ZP_07365695.1| DNA helicase RecG [Prevotella marshii DSM 16973] gi|304335693|gb|EFM01950.1| DNA helicase RecG [Prevotella marshii DSM 16973] Length = 698 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 244/671 (36%), Positives = 381/671 (56%), Gaps = 26/671 (3%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI-SEERIVTITG 74 +GVG K LSK ++ + + DLL Y+P ++DR I E+ S+ V I G Sbjct: 11 LQGVGPKRKEILSKELHIES-----YRDLLEYYPYKYVDRSRIYAIDELRSDMPFVQIKG 65 Query: 75 YISQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133 I + +RR I DG G + L++F + KN I V G+ Sbjct: 66 RILSFEEYDTGRRRKRIIAHFTDGHGVVDLVWFQGTQYVYKNYRVNTDYI-VFGRPSLYN 124 Query: 134 NRIIMVHPHYIFHNSQDVNFPLIEAV-YSLPT------GLSVDLFKKIIVEALSRLPV-L 185 R HP N+ + + Y + T G++ +K+ + ++P L Sbjct: 125 GRYQFAHPD--IENAAQLQLSTMGMQPYYVTTERMKKAGITSRAIEKLTKTLIEKIPSPL 182 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 PE + + Q S EA IH P+ A+D TS AR RL ++EL Q+ +L Sbjct: 183 PETLPPFITQPLHLISRDEACRKIHYPQSAED---TSRARLRLKFEELFYVQLNILRYAS 239 Query: 246 QFKKEI-GIPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 K++ G G + + N+PF T++Q+ I++I DM+ ++M R+LQGDVG Sbjct: 240 DHKRKYRGYVFTRVGSLFNRFYSSNLPFPLTEAQKRVIREIRSDMASGSQMNRLLQGDVG 299 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKTLVAL++M A++ G QA IMAP ILA+QH I + + + VE++TG + Sbjct: 300 SGKTLVALMSMLIALDNGFQACIMAPTEILAEQHLTTIGTFLKGMDVRVELLTGMVKGRR 359 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPH 422 R+ LE +A+G+ I++GTHA+ ++++Q+ +L +VDEQHRFGV QR +L K+ PH Sbjct: 360 RQAILEGLANGEVQILVGTHAVIEENVQFARLGFAVVDEQHRFGVAQRARLWSKSENPPH 419 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 VL+MTATPIPRTL +T GD+D+S I E P GRKPI+T+ ++ + + ++ + G Sbjct: 420 VLVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTLHKYDTQLTSLYQSIRREIELG 479 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541 ++ Y + P I E ++ + +++ + + +L E F ++ +HG+M +KE+ M F +G Sbjct: 480 RQVYIVFPLISESEKIDLKNLEDGYAALLEIFPEYRLSKVHGKMKSAEKEAEMQRFISGE 539 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L+ATTVIEVG++V +AS++II +A+ FGL+QLHQLRGRVGRG E S CIL+ LS Sbjct: 540 TQILVATTVIEVGVNVPNASVMIIMDAQRFGLSQLHQLRGRVGRGAEQSYCILVSPFKLS 599 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIAR 660 + R+ ++ T DGF IAE DLK R G++ G +QSG+ L IA ++++AR Sbjct: 600 AETRRRIDIMCETNDGFRIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQIVQLAR 659 Query: 661 KDAKHILTQDP 671 ++A+ I+ DP Sbjct: 660 EEARKIIETDP 670 >gi|301299276|ref|ZP_07205562.1| ATP-dependent DNA helicase RecG [Lactobacillus salivarius ACS-116-V-Col5a] gi|300853120|gb|EFK80718.1| ATP-dependent DNA helicase RecG [Lactobacillus salivarius ACS-116-V-Col5a] Length = 676 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 240/676 (35%), Positives = 379/676 (56%), Gaps = 56/676 (8%) Query: 13 LSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 + RGVG K L+K+ +N DLL ++P + D + + EI+ + VT Sbjct: 7 VGVLRGVGPKKIQALNKLGVNT-------IEDLLTFYPFRYNDIAVK-NLEEINSQEKVT 58 Query: 72 ITGYISQHS---SFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 + G ++ F +K R +K+L+N +T F+ + + K V G+++ V G Sbjct: 59 LKGIVASEPVLVRFGRKKSRLNFKLLINHDVIGVT---FFNQPWISKQVT-TGQELAVYG 114 Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL----- 182 K L+ + + I + D VY + + K+++ +A Sbjct: 115 KYDALRQSLSGIK--IISRKTND-----FVGVYRSSKDIKESVVKQLVKQAYEEYNSYIR 167 Query: 183 PVLPEWIE--------KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234 V+PE I K ++ FPS +K D AR +DE Sbjct: 168 DVVPESIRIKYHLENRKQMIHDMHFPST----------KKEADL-----ARRSAIFDEFF 212 Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 + + L L+++ K +G+ I + ++ ++ +PF TK+Q+ + +I DM N M Sbjct: 213 SFEAGLQLLKRDNHKNMGLRIKYNNEKLKEFIKGLPFELTKAQKRVVNEICADMLSPNHM 272 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R+LQGDVGSGKT++A IAM A V AG QAV+MAP ILAQQH E + + I V + Sbjct: 273 NRLLQGDVGSGKTIIAAIAMYATVTAGFQAVLMAPTEILAQQHAEKLANLFEQYGISVAL 332 Query: 355 ITGNMPQ--AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 +T + +R+ L+ + +G I+IGTHA+ QD+I+++ L L I DEQHRFGV QR Sbjct: 333 MTSSSLSRVKVKRELLKHLKNGDIDIVIGTHAVIQDNIEFHNLGLAITDEQHRFGVNQRR 392 Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 L +K P +L MTATPIPRTL +T+ G++D+S I E P GR+P+KT + ++ V Sbjct: 393 ILRKKGVNPEILAMTATPIPRTLAITTYGEMDVSIIDELPKGRQPVKTSWVKKKQVKNVF 452 Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKE 531 E +K L G +AY I P +EE + + ++ E F E+F S +A++HG+M +KE Sbjct: 453 EFVKRQLELGTQAYIISPLVEESELLDLQNAEEVFEKAKEYFGSEKVALLHGKMDANEKE 512 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 M +FKN +L++TTVIEVG+DV +A+++II +A+ FGLAQLHQLRGRVGRG + S Sbjct: 513 QAMQAFKNKEVSILVSTTVIEVGVDVPNATVMIILDADRFGLAQLHQLRGRVGRGSKESY 572 Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 CIL+ P S+ R+ ++ T DGFLI+++DL+ R GE+LG KQSG+P+F + P + Sbjct: 573 CILVADPK-SEYGKERMKIMTETNDGFLISQKDLELRGPGEVLGKKQSGLPEFKVGDPVV 631 Query: 652 HDSLLEIARKDAKHIL 667 + ++L++A+++A +++ Sbjct: 632 NLNILQVAQEEAHNVV 647 >gi|227530549|ref|ZP_03960598.1| DNA helicase RecG [Lactobacillus vaginalis ATCC 49540] gi|227349555|gb|EEJ39846.1| DNA helicase RecG [Lactobacillus vaginalis ATCC 49540] Length = 679 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 231/670 (34%), Positives = 365/670 (54%), Gaps = 26/670 (3%) Query: 5 FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64 + L P+S +GVG K ++ + N DLL Y+P+ + D +S + Sbjct: 1 MMKSLQDPVSVLKGVGPK------RVADLATLNIDTIEDLLTYYPTRY-DDFTANDLSTV 53 Query: 65 SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEGRKI 123 +++ VTI G I F R ++ G+ + + F+ + + K V + R++ Sbjct: 54 KDKQRVTIKGKIVSEPLFSRFGYRRNRLSFRLQVGQQVVMATFFNQPYLKKQVELD-RQV 112 Query: 124 TVTGKIKKLKNRII---MVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 TV GK + ++ +V N A+Y L + +I +A Sbjct: 113 TVMGKWDASRQQVTGTKLVTATGTPENE-------FGAIYPTNKHLRQSTLRSLIRQAYE 165 Query: 181 RLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 V+P + L QK E +H P AR Y+E Q+ Sbjct: 166 DYQRVIPTLLPTFLRQKYRLLDRREMIKDLHFPGSQM---IAKAARRTATYEEFFLFQLR 222 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L +R+ ++E G I ++ + +PF T +Q+ + +I +D+ Q +M R+LQ Sbjct: 223 LQAIRRAHRQEDGTRILYHNDELKEFISQLPFELTNAQKKVVNEICRDLRQPIQMNRLLQ 282 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT+VA IA+ A + AG QA +MAP ILA QH E + K T + V ++TG++ Sbjct: 283 GDVGSGKTIVAAIAIYATISAGYQAALMAPTEILATQHAEKLAKVFAGTHVHVGLLTGSL 342 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R+ + I G ++IIGTHAL Q ++Y L LVI DEQHRFGV QR +L +K Sbjct: 343 TAKQHRELVGAIKKGDINLIIGTHALIQSDVEYANLGLVITDEQHRFGVNQRQQLREKGE 402 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 P VL MTATPIPRTL +TS G++D+S I + PAGRKPI+T + + ++ ++ L+ L Sbjct: 403 HPDVLAMTATPIPRTLAITSYGEMDVSVIDKLPAGRKPIETRWLKDKQSNDALKFLRQQL 462 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSF 537 + G +AY + P IEE + + ++ + + L +F + ++HGR++ K++VM F Sbjct: 463 ASGAQAYVVSPLIEESEALDVQNATDLYERLANYFQPDYQVGLLHGRLNGEKKDAVMKDF 522 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 ++G ++L++TTV+EVG+D +A+++II NA+ FGLAQLHQLRGRVGRGE S C+L+ Sbjct: 523 QDGKIQVLVSTTVVEVGVDNPNATVMIIYNADRFGLAQLHQLRGRVGRGERQSYCLLIAD 582 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 P + + R+ + T DGF +A+ DL+ R G++LG KQSG+P F + P +L+ Sbjct: 583 PKTDEGT-ARMKTMVATTDGFKVAQRDLELRGAGDVLGAKQSGLPDFKVGDPIGDLKILQ 641 Query: 658 IARKDAKHIL 667 IA++DA ++L Sbjct: 642 IAKEDAANLL 651 >gi|297191821|ref|ZP_06909219.1| ATP-dependent DNA helicase RecG [Streptomyces pristinaespiralis ATCC 25486] gi|197722012|gb|EDY65920.1| ATP-dependent DNA helicase RecG [Streptomyces pristinaespiralis ATCC 25486] Length = 738 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 238/712 (33%), Positives = 380/712 (53%), Gaps = 71/712 (9%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGE 100 DLL ++P + +R +SE+ + VT+ ++ +F + R ++ + DG+G Sbjct: 44 DLLHHYPRRYAERGELTSLSELPLDEHVTVVAQVADARIHTFNQGRGRRLEVTITDGSGR 103 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY--------------IFH 146 + L+FF + G + GK+ ++ + HP Y F Sbjct: 104 LQLVFFGKGVHKPHKDLLPGTRAMFAGKVSVFNRKLQLSHPAYEPLSGGASAADAVDAFA 163 Query: 147 NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206 N +P + + S ++D EA+ LP L + + ++ +A Sbjct: 164 NQLIPIYPACKQLESWKISKAIDAVLDRSAEAVDPLP-------PALREGRGMATLPDAL 216 Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI----NVEGKIA 262 IH PR D E ARERL +DE Q+AL R+++ + +P V G + Sbjct: 217 RKIHRPRTKADIE---AARERLKWDEAFVLQVAL--ARRRYA-DTQLPAVARRPVPGGLL 270 Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 +PF+ T+ Q+S K+I D++ ++ M R+LQG+VGSGKT+VAL AM A V+AGG Sbjct: 271 DAFDAELPFTLTEGQQSVSKEIFDDLATEHPMHRLLQGEVGSGKTMVALRAMLAVVDAGG 330 Query: 323 QAVIMAPIGILAQQHYEFIKKYT-------------QNTQIIVEIITGNMPQAHRRKALE 369 QA ++AP +LAQQH+ I + Q T+++ ++TG+M A RR AL Sbjct: 331 QAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGAEQGTKVV--LLTGSMGAAARRHALL 388 Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTA 428 + G+A I+IGTHAL +D ++++ L LV+VDEQHRFGV+QR L K PH+L+MTA Sbjct: 389 DLVTGEAGIVIGTHALIEDKVRFHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVMTA 448 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKK 484 TPIPRT+ +T GD++ S + + PAGR PI + ++P + ER++ + G + Sbjct: 449 TPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAADKPHFLSRAWERVREEVEGGHQ 508 Query: 485 AYWICPQIEEKKESNFR-------------SVVERFNSLHEHFTSS--IAIIHGRMSDID 529 AY +CP+I + +E + +V+E + L + S + ++HGRM+ D Sbjct: 509 AYVVCPRIGDDEEQPKKKTAEDEAEKRPPLAVLEVADQLAKGPLSGLRVEVLHGRMAPDD 568 Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589 K+ VM F G +L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQLRGRVGRG Sbjct: 569 KDDVMRRFSAGDVDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAP 628 Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649 C+L+ P + + RL+ + +T DGF ++ DL+QR+EG++LG QSG+ L Sbjct: 629 GLCLLVTEMPEASPARQRLAAVASTLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRMLT 688 Query: 650 ELHD-SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 + D ++ AR++A I+ DPDL R +R L E Q++ G Sbjct: 689 VIEDEEVIAAAREEAVAIVGADPDLE--RLPELRTALDALLDKEREQYLDKG 738 >gi|289550993|ref|YP_003471897.1| ATP-dependent DNA helicase RecG [Staphylococcus lugdunensis HKU09-01] gi|289180525|gb|ADC87770.1| ATP-dependent DNA helicase RecG [Staphylococcus lugdunensis HKU09-01] Length = 681 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 224/659 (33%), Positives = 368/659 (55%), Gaps = 19/659 (2%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS +G+G K L+++ N DL+ Y P+ + D +S ++ +VT Sbjct: 12 PLSHIKGLGPKRIAILNEL------NIYSVGDLVLYLPTRYEDNTV-VDLSTAEDQTMVT 64 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + R K+ ++ I + + LKN +++TV GK + Sbjct: 65 VEGEVYSMPTVAFFGRNKSKLTIHLMINNIAVKCVFFNQPYLKNKIALNQRVTVKGKWNR 124 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191 K I + + +F N +E +Y + G+ + +I EAL + + EW+ + Sbjct: 125 AKQEI---NGNRMFFNQSSSKQDELEPIYRIKDGIKQKNMRDMIREALRDVKI-HEWLSE 180 Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKE 250 DL K S+ I+H+P KD AR A+ EL ++ + L R + + Sbjct: 181 DLKAKYKLESLESTIKILHHP---KDKAALLRARRTYAFTELFMFELRMQWLNRLEKAAD 237 Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310 I IN + + + + +PF T +Q+ ++ +I +D+ RM R+LQGDVGSGKT+VA Sbjct: 238 NAIEINYDLRQVKDFIDVLPFDLTDAQKQSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVA 297 Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370 I M A AG Q+ +M P ILA+QH E + K ++ V ++TG++ R+ LE+ Sbjct: 298 AICMYALKTAGYQSALMVPTEILAEQHAESLVKLF-GERMNVALLTGSVKGKKRQLLLEQ 356 Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430 +A G +IGTHAL Q+ +Q+ + LVI DEQHRFGV QR L +K +VL MTATP Sbjct: 357 LAQGTIDCVIGTHALIQEDVQFNNIGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATP 416 Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490 IPRTL ++ G++D+S I + P GRKPIKT + ++V+ ++ L +G++AY ICP Sbjct: 417 IPRTLAISVFGEMDVSSIKQLPKGRKPIKTSWAKHEQYEQVLHQMTSELQKGRQAYVICP 476 Query: 491 QIEEKKE-SNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548 IE + + ++VV + SL ++ + + ++HG++S DK+ VM+ F +L++T Sbjct: 477 LIESSEHLEDVQNVVAIYESLQHYYGAERVGLLHGKLSTEDKDDVMNQFSCHQIDILVST 536 Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608 TV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E S C+L+ P ++ R+ Sbjct: 537 TVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIERM 595 Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 +++ T DGF ++E DL+ R G+ G+KQSG+P F++A +LE+AR +A ++ Sbjct: 596 TIMTQTNDGFELSERDLEMRGPGDFFGVKQSGLPDFMVANVVEDYRMLEVARDEASELI 654 >gi|300863472|ref|ZP_07108427.1| ATP-dependent DNA helicase recG [Oscillatoria sp. PCC 6506] gi|300338535|emb|CBN53569.1| ATP-dependent DNA helicase recG [Oscillatoria sp. PCC 6506] Length = 694 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 235/655 (35%), Positives = 372/655 (56%), Gaps = 26/655 (3%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKI---LLN 95 T +DLL Y P +I ++ R KI+ + VTI G I +H K I ++ Sbjct: 27 TSILDLLLYFPRDYI-KYRRVKIAGLQIGDSVTIVGKIKKHEIISPPKNPRLTIQTLIVK 85 Query: 96 DGTGEITLLFF----YRKTEMLKN----VFFEGRKITVTGKIKKLKNR-IIMVHPHY--- 143 D TG I F Y +++ +N ++ G +TV+G +K + +I+ P Sbjct: 86 DKTGNIACKRFFNHTYYQSQQWRNEQNLMYVNGSIVTVSGVVKADRYYGMILTSPEIQLI 145 Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203 +D +I +Y L G+S ++ ++ + AL +L + + + L +K + Sbjct: 146 DLDQVRDTKNSII-PIYPLTKGVSNEIVQEAVSSALEMTELLIDPLPQHLRRKCGLMELQ 204 Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIA 262 A IH P E AR RL +DE Q++ L+ R+Q I I + Sbjct: 205 VAIANIHQPPDEPQLE---AARRRLVFDEFFYLQLSFLVRRRQLLARSAITKITPTSPLV 261 Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 ++ +PFS T +Q I DIL DM+ K M R++QGDVGSGKT+VA++A+ A+++G Sbjct: 262 EQFYSQLPFSLTLAQRQVINDILNDMTAKTPMNRLVQGDVGSGKTVVAVVAILVAIQSGY 321 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 QA +MAP +LA+QHY I + + + V+++TG+ A RR+ ++ G+ +++GT Sbjct: 322 QAALMAPTEVLAEQHYRKIATWFEPLGVSVQLLTGSTKTAKRREIHAQLETGELSLLVGT 381 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 HAL Q+ + + +L LV++DEQHRFGVQQR L K PHVL MTATPIPRTL LT GD Sbjct: 382 HALLQEKVNFNQLGLVVIDEQHRFGVQQRQNLLNKGNRPHVLTMTATPIPRTLALTLHGD 441 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502 +D+S+I E P GR+ I T + IN+ + + + +G++AY I P +EE ++ + R+ Sbjct: 442 LDVSQIDELPPGRQKIHTKV--INKGAPAYDFIHHQVLQGRQAYIILPLVEESEKLDLRA 499 Query: 503 VVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560 V + L + ++HGRM+ +K+ + SF++ ++L++TTV+EVG+DV +A Sbjct: 500 AVAEYERLSTEIFPEFRVGLLHGRMTSAEKDEALKSFRDNKTQILVSTTVVEVGVDVPNA 559 Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620 ++I+I++A+ FGLAQLHQLRGRVGRG S C+LL + + RL VL+ + DGF I Sbjct: 560 TVILIDHADRFGLAQLHQLRGRVGRGSHRSYCLLL-DTSKTAEAKARLEVLEKSTDGFFI 618 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 +E DL+ R G ++G +QSG+ +F +A + LL +AR A I+ DP+L + Sbjct: 619 SEMDLRLRGPGVVMGYRQSGISEFALANILDDEDLLNLARCMAVVIVKSDPNLEA 673 >gi|300775765|ref|ZP_07085626.1| DNA helicase RecG [Chryseobacterium gleum ATCC 35910] gi|300505792|gb|EFK36929.1| DNA helicase RecG [Chryseobacterium gleum ATCC 35910] Length = 695 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 235/679 (34%), Positives = 376/679 (55%), Gaps = 24/679 (3%) Query: 17 RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE--RIVTITG 74 +G+G + + + ++ D+L ++P ++D+ KIS++ EE + + + G Sbjct: 11 KGIGPERAKLIKNVLGLSTVE-----DMLNFYPIRYLDKSKIYKISQLQEESSQEIQLKG 65 Query: 75 YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134 I+Q Q K + ND TG + L++F + ++ LK +++ + GKI Sbjct: 66 KITQVQEIQTGKTKRLSAKFNDDTGSMDLVWF-QYSKWLKEQLPVNKEVYIFGKINVFNR 124 Query: 135 RIIMVHPHYIFHNSQDVN------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188 + M HP ++ + +P E + GL+ F+ + +P L E Sbjct: 125 QFSMPHPEIEAEEKKEGDTRLKPIYPSSEKL--TKRGLNQRFFQNALRNICKEIPGLIEE 182 Query: 189 IEKDLLQKK-SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247 D L K F S AF +H P KD E + A RL ++E Q+ L + Sbjct: 183 NFPDYLMKTFKFMSRQHAFLNVHFP---KDMEHFNKADYRLKFEESFFFQLGYGLKKLHH 239 Query: 248 KKEI-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 K + G P + G N +PF T +Q+ +K+I DM + +M R+LQGDVGSG Sbjct: 240 KTQSHGNPFPIIGDHFNDFYENHLPFDLTNAQKRVLKEIRMDMKRSIQMNRLLQGDVGSG 299 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VAL+ M A++ G Q+ +MAP ILAQQHY IK+ + T I + ++TG+ + RR Sbjct: 300 KTMVALLTMLIAMDNGFQSCLMAPTEILAQQHYNGIKELLEKTGINIRLLTGSTKASERR 359 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVL 424 E + +G I++GTHA+ +D +++ L L I+DEQHRFGV QR KL K PH+L Sbjct: 360 VIHEELENGTLSILVGTHAVLEDKVKFKNLGLAIIDEQHRFGVAQRAKLWAKNKIPPHIL 419 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 +MTATPIPRTL ++ D+D+S I E P GRKPI T V K + +G++ Sbjct: 420 IMTATPIPRTLAMSFYSDLDVSVIDEMPVGRKPIITAHRREKDRLYVYNFCKDEIKKGRQ 479 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y++ P IEE + ++++++E + ++F+ ++ ++HG+M +K++ M F +G + Sbjct: 480 VYFVYPLIEESETLDYKNLMEGLEHVMDYFSEYNVTMLHGKMKPDEKDAAMAYFASGKAE 539 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +++ATTVIEVG++V +AS+++IE++E FGL+QLHQLRGRVGRG E S CIL+ LSK Sbjct: 540 IMVATTVIEVGVNVPNASVMVIESSERFGLSQLHQLRGRVGRGAEQSYCILMTSDKLSKE 599 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 S TR+ + T DGF I+E D++ R G+ILG +QSG+ F ++++ + Sbjct: 600 SRTRIRTMTETNDGFKISEVDMQLRGPGDILGTQQSGVVDFKRLDLINDSAIIKTTKNTV 659 Query: 664 KHILTQDPDLTSVRGQSIR 682 + IL DP L+ Q I+ Sbjct: 660 EKILEADPMLSRPDNQIIK 678 >gi|22537822|ref|NP_688673.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae 2603V/R] gi|25011766|ref|NP_736161.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae NEM316] gi|76788227|ref|YP_330296.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae A909] gi|77406424|ref|ZP_00783482.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae H36B] gi|77412547|ref|ZP_00788841.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae CJB111] gi|22534716|gb|AAN00546.1|AE014268_6 ATP-dependent DNA helicase RecG [Streptococcus agalactiae 2603V/R] gi|24413306|emb|CAD47385.1| Unknown [Streptococcus agalactiae NEM316] gi|76563284|gb|ABA45868.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae A909] gi|77161398|gb|EAO72415.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae CJB111] gi|77174957|gb|EAO77768.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae H36B] Length = 671 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 244/669 (36%), Positives = 375/669 (56%), Gaps = 29/669 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L +P+S +G G K + K+ + DLL Y+P + D + + E+ Sbjct: 3 LQSPISNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEK 56 Query: 69 IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 V ITG + ++ Q KR L G + + FF + L + G+++ V Sbjct: 57 AV-ITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQP--YLADKIELGQEVAVF 113 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA--LSRLPV 184 GK K+ I + + +D P VY + G+S K I A +S Sbjct: 114 GKWDATKSAITGMK---VLAQVEDDMQP----VYRVAQGISQSTLIKAIKSAFEISAHLE 166 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 L E + LL+K ++A +H P KD A R+ ++EL Q+ L +++ Sbjct: 167 LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVLK 223 Query: 245 KQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 + K E G+PI + + ++PF T +Q+ ++ +IL DMS M R+LQGDVG Sbjct: 224 SENKSETNGLPILYSKHAMETKISSLPFILTNAQKRSLDEILSDMSSGAHMNRLLQGDVG 283 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT++A ++M AA AG Q+ +M P ILA+QHY +++ + I I+T M A Sbjct: 284 SGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELFPDLSI--AILTSGMKAAV 341 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 +R L IA+G +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR +K P V Sbjct: 342 KRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPDV 401 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL +T+ G++D+S I E PAGRKPI T + ++ V+E +K L + Sbjct: 402 LMMTATPIPRTLAITAFGEMDVSIIDELPAGRKPIITRWVKHEQLGTVLEWVKGELQKDA 461 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGT 541 + Y I P IEE + + ++ V L +F + +A++HGRM + +K+++M FK+ Sbjct: 462 QVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDKK 521 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S +L+ +P + Sbjct: 522 SHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGYKQSYAVLVANPK-T 580 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 + R++++ T DGF++AE DLK R GEI G +QSG+P+F +A +LE AR+ Sbjct: 581 DSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARR 640 Query: 662 DAKHILTQD 670 A I+ + Sbjct: 641 VASDIVKDN 649 >gi|319649610|ref|ZP_08003766.1| ATP-dependent DNA helicase RecG [Bacillus sp. 2_A_57_CT2] gi|317398772|gb|EFV79454.1| ATP-dependent DNA helicase RecG [Bacillus sp. 2_A_57_CT2] Length = 682 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 244/673 (36%), Positives = 380/673 (56%), Gaps = 32/673 (4%) Query: 6 LNPLF-APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISE 63 +NP + ++ +G+G++ ++ L+++ N N + DLL Y P + D YR K + E Sbjct: 1 MNPNYNQSVTAVKGIGEETAVSLAEM----NINTVK--DLLEYFPYRYED--YRLKDLEE 52 Query: 64 ISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123 I + VT+ G I S R+ ++ + G + LKN + Sbjct: 53 IKHDERVTVEGKIHSEPSLAYYGRKRSRLTVRVLVGRYLIQVVMFNQPYLKNKITLNETV 112 Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL- 182 TVTGK + + +II + I S + +F E VY++ ++V ++ I A S+ Sbjct: 113 TVTGKWDQHR-QIITANELKIGSASSNKDF---EPVYAVKGNITVKGIRRFIKLAFSQYG 168 Query: 183 ----PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 LPE K LLQ + +A +H P A D E R R Y+E Q+ Sbjct: 169 NEISETLPE---KYLLQYRLLDR-RDAMRSLHFP--ANDQELKQ-GRRRFVYEEFFYFQL 221 Query: 239 ALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 + +RK + ++ GI + + + ++PF+ T +Q+ + +IL DM RM R+ Sbjct: 222 KMQALRKIEREQSKGIAQAYDLSRLMEFIDSLPFALTNAQKRVVNEILTDMKSPYRMNRL 281 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 LQGDVGSGKT VA IA+ A+ A Q +M P ILA+QH E +K + + E++T Sbjct: 282 LQGDVGSGKTAVAAIALFASRTADFQGALMVPTEILAEQHAESLKTMLEPFGLRCELLTS 341 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 ++ RR+ L+ + G+ ++IGTHAL Q+ ++Y KL LVI DEQHRFGV QR L +K Sbjct: 342 SVKGKRRREILQHLKDGEIDVLIGTHALIQEEVEYNKLGLVITDEQHRFGVGQRRILREK 401 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 +P VL MTATPIPRTL +T G++D+S I E PAGRK I+T +D V+ ++ Sbjct: 402 GESPDVLFMTATPIPRTLAITVFGEMDVSIIDEMPAGRKAIETYWAKPEMLDRVLGFMEK 461 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMD 535 LS G++ Y ICP IEE + + ++ ++ +L HF + ++HGR+ +KE+VM Sbjct: 462 ELSAGQQVYVICPLIEESDKLDVQNAIDVHATLMHHFHGRYDVGLMHGRLHPDEKENVMK 521 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +F ++L++TTV+EVG++V +A++++I +AE FGLAQLHQLRGRVGRG++ S C+LL Sbjct: 522 AFSRNETQILVSTTVVEVGVNVPNATMMVIYDAERFGLAQLHQLRGRVGRGDKQSYCVLL 581 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-S 654 P S+ R+ ++ T DGF ++E+DL+ R G+ G KQSG+P+F +A +HD Sbjct: 582 ADPK-SEVGKERMKIMTETNDGFALSEKDLELRGPGDFFGKKQSGLPEFKVADM-VHDYR 639 Query: 655 LLEIARKDAKHIL 667 LE AR DA ++ Sbjct: 640 ALEAARNDAASLV 652 >gi|217967527|ref|YP_002353033.1| ATP-dependent DNA helicase RecG [Dictyoglomus turgidum DSM 6724] gi|217336626|gb|ACK42419.1| ATP-dependent DNA helicase RecG [Dictyoglomus turgidum DSM 6724] Length = 779 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 236/639 (36%), Positives = 364/639 (56%), Gaps = 26/639 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ--LQKRRPYKILLNDGTGE 100 DL+ Y+P + DR KISEI VTI I + + +K K ++D TG Sbjct: 121 DLITYYPRDYDDRSKLKKISEIKPGERVTIKVKIIDYEETKTLYKKIPIIKAKISDNTGW 180 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQD---VNFPLI 156 +++ +K +K V G ++ ++G+ K+L I +P Y +D +N I Sbjct: 181 AYAVWYGQK--YIKQVLPPGTELLISGEAKRLLKHIEFENPEYETLDEGEDKEFLNVGRI 238 Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216 +YSL +GL+ + +KII +AL+ + E D L K + E +N++ P Sbjct: 239 VPIYSLTSGLTQKVLRKIIYDALTDYSIFLE----DPLPK----YLREKYNLMDKPVSVW 290 Query: 217 D------FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI-NVEGKIAQKILRNI 269 + F + A +R+ ++EL Q+ L R++ + E+ P+ N++ ++ +K L ++ Sbjct: 291 EKHFPTSFLTMASASKRITFEELFFLQLNLAKKRREIE-ELSAPVFNIQSELVEKFLGSL 349 Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF TK+QE ++I +D+S M R+LQGDVGSGKT++A +A A + G Q M P Sbjct: 350 PFKLTKAQEKVWEEIKKDLSSGRPMHRLLQGDVGSGKTVIAALATILAYDNGYQTAFMVP 409 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILA+QHY +K + I + ++T + P+ + +A G+ ++IGTHAL Q+ Sbjct: 410 TEILAEQHYNRLKNIFEPLGIKIALLTSSTPKKEKTYIYLDLAEGKLPVVIGTHALIQEE 469 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + KL LVI+DEQHRFGV QR KL +K APH+L+MTATPIPR+L L G++DIS I Sbjct: 470 VTFKKLGLVIIDEQHRFGVIQRAKLWKKGEAPHLLVMTATPIPRSLALVLYGELDISIID 529 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 E P GRKP+ T + +V ++ + +GK+A+ +CP IEE ++ S + + Sbjct: 530 ELPPGRKPVITYLFSKKERRKVYSFVEKEIEKGKQAFVVCPLIEESEKLEAESAKKLYEE 589 Query: 510 LHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 L + F +I +IHG + ++ +M+ F+ G ++L+ATTVIEVG+D+ +ASI++IENA Sbjct: 590 LKKFFPRFNIGLIHGLVPREERTRIMEEFQKGEIQILVATTVIEVGVDIPNASIMVIENA 649 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628 + FGLAQLHQLRGRVGRG E S C L+ +N+ RL V+ T DGF+IA +DL+ R Sbjct: 650 DRFGLAQLHQLRGRVGRGSEQSYCFLIADLK-GENAKERLKVMVETNDGFVIANKDLEIR 708 Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 GE G KQ G L L EIAR +A ++ Sbjct: 709 GPGEFFGTKQHGTLDVLFVDLTKDMKLFEIARNEAFEVI 747 >gi|125625276|ref|YP_001033759.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. cremoris MG1363] gi|124494084|emb|CAL99085.1| ATP-dependent DNA helicase [Lactococcus lactis subsp. cremoris MG1363] gi|300072086|gb|ADJ61486.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. cremoris NZ9000] Length = 666 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 233/643 (36%), Positives = 363/643 (56%), Gaps = 26/643 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGE 100 DLL Y P + D R + E+++ TI G + ++ Q KR + +G Sbjct: 31 DLLLYFPFRYEDFASR-SVFELTDGEKATIIGTVVTPANVQYYGFKRNRLSFKIKEGEAV 89 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160 + + FF + L + G++I V GK ++ K +++ + + D +E VY Sbjct: 90 VAVSFFNQP--YLADKVEVGKEIAVYGKWEQTKQQLMGMK---VVAQVDDG----LEPVY 140 Query: 161 SLPTGLSVDLFKKIIVEALSR--LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 L G+ K+I + L LPE + + L++K + EA +H P +D Sbjct: 141 HLTAGMKQSQLVKVIHQVFESGLLSELPENLPEFLIEKYRLMNRQEAVLAMHFP---EDM 197 Query: 219 EWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 A R+ ++EL Q+ L L K+ G+ + E + K + ++PF T Q Sbjct: 198 AAHKQALRRVKFEELFMFQLKLQALKNKEKSGRAGLQVIFEQEEIDKKISDLPFELTGGQ 257 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 A+ +IL DM M R+LQGDVGSGKT+VA ++M AA A QA IM P ILA+QH Sbjct: 258 SRALTEILDDMKSPYHMNRLLQGDVGSGKTVVASLSMYAACLANFQAAIMVPTEILARQH 317 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 + ++ QI ++ + A RR+ L +A G H+++GTHAL Q+ + +Y L L Sbjct: 318 FANLQALFPELQI--SLLVSGLKAAERREILADLASGHTHMVVGTHALIQEGVDFYNLGL 375 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI DEQHRFGV QR L +K P VL+MTATPIPRTL +T+ GD+D+S I E P GR+P Sbjct: 376 VITDEQHRFGVNQRKILREKGQNPDVLMMTATPIPRTLAITAFGDMDVSIIDELPKGRQP 435 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-- 515 I T + + EV+ +K ++ + Y+I P IEE + + ++ F L+++F Sbjct: 436 ITTRWVKHEQFSEVLSWVKGEVANDSQVYFISPLIEESESLDLKNAEALFAELNDYFGLF 495 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + I ++HG+M + +K+ +M FK +L++TTVIEVG+DV +A+I++I +A+ FGL+Q Sbjct: 496 AKIGLLHGKMKNDEKDQIMQEFKAKKLDVLVSTTVIEVGVDVPNATIMVIMDADRFGLSQ 555 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG + S IL+ +P S + R+ ++ T++GF++AEEDLK R GEI G Sbjct: 556 LHQLRGRVGRGTKKSYAILVANPK-SDSGKQRMKIMTETQNGFVLAEEDLKMRGSGEIFG 614 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD---PDLTS 675 ++QSG+P+F+ A ++LE+AR++A I + PDL + Sbjct: 615 LRQSGLPEFIAADLVNDYNILEVARQEAVEIFKKADEFPDLIA 657 >gi|289432949|ref|YP_003462822.1| ATP-dependent DNA helicase RecG [Dehalococcoides sp. GT] gi|288946669|gb|ADC74366.1| ATP-dependent DNA helicase RecG [Dehalococcoides sp. GT] Length = 818 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 226/657 (34%), Positives = 366/657 (55%), Gaps = 33/657 (5%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLL+Y P+ +D KIS++ TI + Q + RR + +L D TG + Sbjct: 148 DLLYYFPNRHLDYSRLKKISQLEAGPEQTIIANVWQSKVNFMGGRRSTEAVLGDDTGNMR 207 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVY 160 ++F M++N+ R + ++G++ + R + P + + + ++ + VY Sbjct: 208 AVWF-NNPYMVRNLKPNAR-VVLSGRVSIFQGRPVFESPEWEELPDEADLIHTGRLVPVY 265 Query: 161 SLPTGLSVDLFKKIIVEALS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 L GL ++++ + P + +++ + L++ ++EA H P D E Sbjct: 266 PLTAGLHQRSLRRLMKNFIDISSPNISDFMPAETLKRTRLLPLSEAIRQAHFP---DDEE 322 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 + AR RLA+DEL Q+ +L +K++ ++ G +NV + + +PF T +Q Sbjct: 323 LKNAARNRLAFDELFILQLGVLAKKKRWHEQAGRALNVNIPDIDRFVSKLPFKLTDAQTR 382 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 + DI D+S+ M R+LQG+VGSGKT+VA+I++ A G Q MAP ILA+QH++ Sbjct: 383 CLADIKADISKGVPMSRLLQGEVGSGKTIVAVISLFTAAANGLQGAFMAPTEILAEQHFK 442 Query: 340 FIKK---------------YT----QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380 + + YT + + V ++ +M + + E+I G+ I I Sbjct: 443 SVTRLFASIARVSTLLDGIYTFEGLLDRPLKVALLISDMKGSQKDILKEKIKKGEVDIAI 502 Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440 GTHAL Q I++ L L ++DEQHRFGV+QR L K PH+L+MTATPIPRTL LT Sbjct: 503 GTHALIQKEIRFKSLGLAVIDEQHRFGVEQRSALRSKGLNPHILIMTATPIPRTLALTLY 562 Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500 GD+D+S I E P GR+ IKT + + + ++ + EG++A+ ICP +EE + Sbjct: 563 GDLDLSVIDELPPGRQSIKTRWLKPEQRNSAYTFIRKQIQEGRQAFIICPLVEESEVIQA 622 Query: 501 RSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 ++ + +L S +A++HGRM+ +KE++M F G +L++T VIEVGID+ Sbjct: 623 KAATAEYETLSREVFPESRVALLHGRMNASEKETIMRHFSEGEMDILVSTPVIEVGIDIP 682 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618 +A+++++E+A+ FGL+QLHQ RGRVGRG E S C+ L P S RLS++++T+DGF Sbjct: 683 NAAVMLVESADRFGLSQLHQFRGRVGRGTEQSYCMFLAENP-SLLGQERLSIIESTQDGF 741 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLT 674 +AEEDL+ R GE G +QSG+P +A + D LLE ARK+A + DP+L+ Sbjct: 742 KLAEEDLRLRGPGEFFGTRQSGLPNLRMAS--ISDVGLLEQARKEATRLFESDPELS 796 >gi|323340718|ref|ZP_08080970.1| DNA helicase RecG [Lactobacillus ruminis ATCC 25644] gi|323091841|gb|EFZ34461.1| DNA helicase RecG [Lactobacillus ruminis ATCC 25644] Length = 680 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 235/668 (35%), Positives = 375/668 (56%), Gaps = 37/668 (5%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 +S G+G K L L + ET DLL Y+P + D + ++SE+++ + I Sbjct: 8 VSNLSGIGPKKELALKAL-----GIET-IEDLLCYYPFRYEDMATK-EVSELADGQKAVI 60 Query: 73 TGYISQHSSF----QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 G ++ + + R +K+L G I + FF + LK+ G + V GK Sbjct: 61 QGVVATAPVVVRFGRAKNRLNFKLLA--GHDVIQITFFGQA--YLKDRVQPGSDVAVYGK 116 Query: 129 IKKLKNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVL 185 + + + +F N SQ+ I +Y + K+++ +A V+ Sbjct: 117 YDTARQSMTGMK---LFSNGGSQED----IAGIYRASKEIKAQTIKQLVKKAYEEYQDVI 169 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 E + + +K + E + +H P+ ++FE AR +DE + L L++K Sbjct: 170 EEIVPESTRRKFRLLNRKEMIHDMHFPKTTQEFEI---ARRSAIFDEFFKYEARLALLKK 226 Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ I + + ++ + +PF T +Q+ + +I +DM + M R+LQGDVGSG Sbjct: 227 LDRNDAGLLIKYDNSMVKRFISALPFELTNAQKRVVNEICKDMHRPLHMNRLLQGDVGSG 286 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT++A IAM AAV AG QA +MAP ILAQQH + + Q+ + V ++TG + Sbjct: 287 KTVIAAIAMYAAVTAGFQAALMAPTEILAQQHAKKLSDLFQDFGVSVCLLTGTEASKTKV 346 Query: 366 K--ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 K LER+A+ + I++GTHAL QD + + KL LV+ DEQHRFGV QR L +K P V Sbjct: 347 KHDILERLANKEIDILVGTHALIQDPVIFKKLGLVVTDEQHRFGVNQRKALREKGENPDV 406 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPRTL +T+ G++D+S I E P GRKPI+T + N+++ ++ L+ L +G Sbjct: 407 LAMTATPIPRTLAITTYGEMDVSVINELPKGRKPIRTSWVKQNQMNATLDFLERQLKDGS 466 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGT 541 +AY + P IEE + + ++ E F L + + + ++HGRM +K+ +M FK G Sbjct: 467 QAYVVSPLIEESEAVDLKNAQEVFEKLEKRYAPCYKVGLLHGRMKSDEKDEIMKDFKEGK 526 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L++TTV+EVG+DV +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL P Sbjct: 527 YDILVSTTVVEVGVDVPNATVMVILDADRFGLAQLHQLRGRVGRGSKASYCILCADP--- 583 Query: 602 KNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 K Y R+ + T DGF+I+++DL+ R GE+LG +QSG+P F I P + + L+ A Sbjct: 584 KTDYGKERMQTMVETTDGFVISQKDLELRGPGEVLGSRQSGLPDFRIGDPVANFNTLQAA 643 Query: 660 RKDAKHIL 667 ++A+ I+ Sbjct: 644 MEEARAII 651 >gi|259047424|ref|ZP_05737825.1| ATP-dependent DNA helicase RecG [Granulicatella adiacens ATCC 49175] gi|259035615|gb|EEW36870.1| ATP-dependent DNA helicase RecG [Granulicatella adiacens ATCC 49175] Length = 683 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 237/676 (35%), Positives = 375/676 (55%), Gaps = 26/676 (3%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 +N +F + GVG K L+++ ET + DLL + P + D R ++ I Sbjct: 1 MNEVFQSVQVLPGVGPKRLEPLAEL-----GIETVY-DLLTHFPFRYEDIQIR-DVNTIM 53 Query: 66 EERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 ++ VT+ G ++ S + +K R +++ ++ I + FF + LK+ +G Sbjct: 54 DQEKVTLKGLVATQPVVSYYGFKKNRLAFRMAIDQQV--IQVAFFNQP--YLKDKVVQGE 109 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 +I + GK K +M N +D +EAVY L K++ A+ R Sbjct: 110 EIAIYGKWDA-KRSTLMGMKILSNRNVEDEEGDQVEAVYRTNKSLKQATILKLVQTAMDR 168 Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 +PE + +L +A +H P KD A+ +L Y EL Q+ L Sbjct: 169 FEDKIPEVLPGELTASHHLMGHRDAVRAMHFP---KDELERQSAQYQLVYQELFLYQLRL 225 Query: 241 LLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 MR K+ ++ G + + + ++ +PF T Q+ + +I D+ M R+LQ Sbjct: 226 QWMRQKRHQQTKGQAVLYDNAALKAFIQTLPFELTDGQKKVVNEICFDLRAPYEMNRLLQ 285 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT+VA IAM A G QA +M P ILA+QH I+K Q T + ++TG+M Sbjct: 286 GDVGSGKTIVATIAMVATALTGKQAALMVPTEILAEQHMLTIEKLLQGTSLKAVLLTGSM 345 Query: 360 --PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 Q R++ L I G+A+++IGTHALFQ + + L V++DEQHRFGVQQR L K Sbjct: 346 NRSQKKRKELLATIESGEANLVIGTHALFQQDVNFKDLAFVVIDEQHRFGVQQRQALAGK 405 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 +VL MTATPIPRTL +T+ G++D S + E P GR+PIKT + ++++ + + Sbjct: 406 GAGVNVLQMTATPIPRTLAITAFGEMDTSILGEIPRGRQPIKTTWVREQEMEQIFDFVDR 465 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMD 535 + +G++AY I P IEE + + ++ E + + HF+ + ++HG+M +KE VM Sbjct: 466 QIQKGRQAYMISPLIEESEHLDVQNAEEIYRMISAHFSDRVKVGLLHGKMPADEKEVVMA 525 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FK ++L++TTVIEVG+DV +A++++I +A+ FGLAQLHQLRGRVGRG+ S+CIL+ Sbjct: 526 DFKANNLQVLVSTTVIEVGVDVPNATVMVILDADRFGLAQLHQLRGRVGRGQHASTCILV 585 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 P ++N R+ ++ + DGF ++++DL+ R G++ G+KQSG+P F IA + Sbjct: 586 ASPK-TENGKERMRIMCESTDGFYLSQKDLELRGSGDVFGVKQSGIPDFKIADLIRDYDI 644 Query: 656 LEIARKDAKHILTQDP 671 LE ARKDA ++DP Sbjct: 645 LEQARKDAILYASEDP 660 >gi|254882342|ref|ZP_05255052.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 4_3_47FAA] gi|319640606|ref|ZP_07995325.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_1_40A] gi|254835135|gb|EET15444.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 4_3_47FAA] gi|317387776|gb|EFV68636.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_1_40A] Length = 698 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 245/668 (36%), Positives = 381/668 (57%), Gaps = 21/668 (3%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITG 74 +GVG + + L+K +N + + DLL+Y P ++DR I EI + + G Sbjct: 12 LQGVGPQRATVLNKELNLFSLH-----DLLYYFPYKYVDRSRLYYIHEIDGNMPYIQLKG 66 Query: 75 YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134 I + ++R +DGTG I L++F +L++ + + V GK Sbjct: 67 EILSFETLGEGRQRRLVGHFSDGTGIIDLVWFQGIKYLLEH-YKTRTEYIVFGKPTVFNG 125 Query: 135 RIIMVHPHYIFHNSQDVNFPLIEAVYS----LPTG-LSVDLFKKIIVEALSRL-PVLPEW 188 RI + HP ++ ++ Y+ + G L+ +K++ AL+ L L E Sbjct: 126 RINVAHPDMDPSGELTLSTMGLQPYYNTTERMKRGFLNSHGLEKLMKNALALLQEPLAET 185 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248 + L+++ S+ EA IH P K+ E A+ RL ++EL Q+ +L K + Sbjct: 186 LPPRLVEEHHLMSLDEAIRNIHFP---KNPELLRKAQYRLKFEELFYVQLNILRYSKDRQ 242 Query: 249 KEI-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 ++ G+ G+I +N+PF T +Q+ IK+I +DM +M R+LQGDVGSGK Sbjct: 243 RKYRGLRFERVGEIFNTFYSQNLPFELTGAQKRVIKEIRKDMGSGRQMNRLLQGDVGSGK 302 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366 TLVAL++M A++ G QA +MAP ILA QHYE I+K+ + VE++ G++ R K Sbjct: 303 TLVALMSMLIALDNGYQACMMAPTEILAAQHYETIRKFLFGMDVRVELLMGSVKGKKREK 362 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLL 425 L+ + G I+IGTHA+ +D++ + L +VI+DEQHRFGV QR KL K PHVL+ Sbjct: 363 ILKDLLTGDVQILIGTHAVLEDTVGFSSLGMVIIDEQHRFGVAQRAKLWSKNVCPPHVLV 422 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T GD+D+S I E P GRKPI+T+ NR + ++ + EG++ Sbjct: 423 MTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTIHQFDNRRASLYASIRKQIEEGRQI 482 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544 Y + P I+E ++ + +++ E + + F ++ +HG+M +K++ M F +G ++ Sbjct: 483 YIVYPLIKESEKMDIKNLEEGYELICAEFPDCQVSKVHGKMKPAEKDAEMQRFVSGETQI 542 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 ++ATTVIEVG++V +AS+++IENAE FGL+QLHQLRGRVGRG + S CIL+ L++ + Sbjct: 543 MVATTVIEVGVNVPNASVMVIENAERFGLSQLHQLRGRVGRGADQSYCILVTTYKLTEET 602 Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDA 663 RL ++ T DGF IAE DLK R G++ G +QSG+ L IA LL+ R A Sbjct: 603 RKRLEIMVQTNDGFEIAEADLKLRGPGDLEGTQQSGVAFDLKIADIARDGQLLQYVRDVA 662 Query: 664 KHILTQDP 671 I+ +DP Sbjct: 663 NRIVDEDP 670 >gi|258511312|ref|YP_003184746.1| ATP-dependent DNA helicase RecG [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478038|gb|ACV58357.1| ATP-dependent DNA helicase RecG [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 678 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 227/636 (35%), Positives = 352/636 (55%), Gaps = 23/636 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLN----DGT 98 DLL +P + +R +P SE + VT + Q++ R I+ DG Sbjct: 32 DLLHTYPFRYDERAEKP-FSEWRDGDRVTARAVV--EGPVQVRWRGSKSIMTARVRVDGQ 88 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 + L+F L++ +GR I VTGK + R++ + P + Sbjct: 89 HPVVCLWF--SQHYLRSKLSDGRFIVVTGKWNEALRRLVASETSF----DAGTQAPSLVP 142 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 VY LS ++I++AL + + E + L++K + +A +H P+ +D Sbjct: 143 VYRASKELSTKAIHQLILKALEQYAEEIQESLPYALVRKYRLWTHRDALFGMHRPKSLED 202 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI--PINVEGKIAQKILRNIPFSPTK 275 AR RL ++E L QI L +R + ++ G P+ + A + L +P T Sbjct: 203 ---VRQARRRLVFEEFLLFQIQLQWLRAKREEPAGRAQPVPSDALTAFEAL--LPGPMTN 257 Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 +Q A +DIL+D+ + M R++QGDVGSGKT VAL A A A GQ+ +MAP ILA+ Sbjct: 258 AQRRACEDILRDLQRPVPMTRLIQGDVGSGKTWVALFACFAVHLARGQSALMAPTEILAE 317 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 QH + + + VE++TG++ R + L +A G + +GTHAL + +++ L Sbjct: 318 QHARLAHELLGSAGVRVELLTGSVTGRERDRVLAGLASGDVSLAVGTHALLSEGVEFRDL 377 Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 L++ DEQHRFGV QR +L +K AP VL+++ATPIPRTL L GD+D+S + E P GR Sbjct: 378 ALLVTDEQHRFGVAQRARLREKGRAPDVLMLSATPIPRTLALAIYGDMDVSILNELPKGR 437 Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 KP++T+ +P + V+ ++ L+ G +AY + P IE + + SV E + + EH Sbjct: 438 KPVQTIAVPSKDDETVLRLIRRELARGHQAYIVAPAIEASERDDVASVTELYERVREHLA 497 Query: 516 S-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + ++HGRM DKE +M +F++G L+ATTVIEVGIDV +A+++ I AE FGLA Sbjct: 498 GFRVELLHGRMPSADKERMMRAFRDGDIHALVATTVIEVGIDVPNATVMAIYGAERFGLA 557 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG S C+L+ H S+ + R+ + T DGF IAE DL+ R GE+ Sbjct: 558 QLHQLRGRVGRGPHPSYCLLI-HDASSEAARARIETMLQTNDGFEIAERDLELRGPGELF 616 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670 G++QSG+P+F + ++E+AR++A +L +D Sbjct: 617 GLRQSGLPEFALGDLARDYRIMEVAREEALALLRRD 652 >gi|224025353|ref|ZP_03643719.1| hypothetical protein BACCOPRO_02092 [Bacteroides coprophilus DSM 18228] gi|224018589|gb|EEF76587.1| hypothetical protein BACCOPRO_02092 [Bacteroides coprophilus DSM 18228] Length = 699 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 238/670 (35%), Positives = 374/670 (55%), Gaps = 22/670 (3%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITG 74 +GVG + + LSK +N + F DLL+Y P ++DR I EI + + G Sbjct: 12 LQGVGPQRADILSKELNIRS-----FKDLLYYFPYKYVDRSRLYYIHEIDGNMPYIQLRG 66 Query: 75 YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134 + + ++R +DGTG + L++F + + + + + V GK Sbjct: 67 KVLSFETVGEGRQRRLVGHFSDGTGVVDLVWF-QGLKFVMGKYKANEEYIVFGKPTVFNG 125 Query: 135 RIIMVHPHYIFHNSQDVNFPLIEAVYSLP-----TGLSVDLFKKIIVEALSRL--PVLPE 187 RI + HP ++ ++ Y+ T L+ +K++ + L L E Sbjct: 126 RINIAHPDIDPAAELTLSAMGLQPYYNTTERMKRTNLTSHALEKLMKNLFTALQHECLDE 185 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247 + L++ S+ +A IH PR + A+ RL ++EL Q+ +L K+ Sbjct: 186 TLSPSLIEAHHLMSLTDALYNIHFPRNP---DLLRKAQYRLKFEELFYIQLNILRYTKER 242 Query: 248 KKEI-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ G+I +N+PF T +Q+ I+++ +DM +M R+LQGDVGSG Sbjct: 243 RNKFRGLVFGRVGEIFNTFYAQNLPFQLTGAQKRVIREMRRDMGSGRQMNRLLQGDVGSG 302 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KTLVAL+ M A++ G QA +MAP ILA QHYE I ++ + + VE++TG + R Sbjct: 303 KTLVALMTMLIALDNGFQACMMAPTEILAVQHYETINRFLEGMNVRVELLTGTVKGKKRE 362 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVL 424 L + G I+IGTHA+ +D++ + L LV++DEQHRFGV QR KL K T PHVL Sbjct: 363 AILSGLLTGDVQILIGTHAVIEDTVNFSSLGLVVIDEQHRFGVAQRAKLWAKNTCPPHVL 422 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 +MTATPIPRTL +T GD+D+S I E P GRKPI+TV NR + L+ + EG++ Sbjct: 423 VMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTVHQFDNRRPSMYAFLRKQIQEGRQ 482 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y + P I+E ++ + +++ + + + E F ++ +HG+M +KE M F + Sbjct: 483 VYIVYPLIQESEKMDIKNLEDGYLHICEEFPEYKVSKVHGKMKPAEKEEEMQRFLRNETQ 542 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +++ATTVIEVG++V +AS+++IENAE FGL+QLHQLRGRVGRG + S C+L+ L++ Sbjct: 543 IMVATTVIEVGVNVPNASVMVIENAERFGLSQLHQLRGRVGRGADQSYCVLVTGYKLTEE 602 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKD 662 + R+ ++ T DGF IAE DLK R G++ G +QSG+ L IA LL+ R+ Sbjct: 603 TRKRIEIMVQTNDGFEIAEADLKLRGPGDLEGTQQSGVAFDLKIADIARDGQLLQYVREI 662 Query: 663 AKHILTQDPD 672 A+ +L +DP+ Sbjct: 663 AERLLEEDPE 672 >gi|228470578|ref|ZP_04055435.1| ATP-dependent DNA helicase RecG [Porphyromonas uenonis 60-3] gi|228307705|gb|EEK16681.1| ATP-dependent DNA helicase RecG [Porphyromonas uenonis 60-3] Length = 697 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 236/696 (33%), Positives = 383/696 (55%), Gaps = 35/696 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRH-------YRPKI 61 L PL+ G+G K + +++ ++ + DLL++ P + DR P + Sbjct: 4 LTTPLADLPGLGTKRAQLIAEELDLHT-----YRDLLYHIPYRYADRRVIYPIGSLMPSM 58 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 SE V + G + S+ L ++ L D TGE+ LL +++ + ++ G Sbjct: 59 SE------VQVEGILQPFSAPSLGRKSNLSARLMDDTGEL-LLVWFKGQDYIQRSLTPGC 111 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS---VD-LFKKIIVE 177 K V GK++ N++ + HP + + + + +Y + L +D F ++ Sbjct: 112 KYIVYGKLQLFNNQLQITHPEIKLADKPNPSVGGYQPIYRITERLKRSRIDSAFLGRYID 171 Query: 178 ALSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235 L + P +PE + + L+ + + A IH+P + E A+ RL YDEL Sbjct: 172 QLLQSPYFSIPETLSEPLIAHRHLVPLQTAIRWIHHP---QSVEQAQVAKFRLKYDELFY 228 Query: 236 GQIAL--LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 + L L + ++ + E G ++ G + + +P+ T +Q+ +++I +D + + Sbjct: 229 LNLYLRRLAVMQRMRYE-GYRLDQVGPLFNSLYHALPYDLTGAQKRVLREIRRDTNSGAQ 287 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R+LQGDVGSGKTLVAL AM AV+ G QA ++AP ILAQQHYE I ++ + + + Sbjct: 288 MNRLLQGDVGSGKTLVALFAMLLAVDNGYQACMLAPTEILAQQHYETISEFVEGLDVSIA 347 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++TG+ RR+ L +A G I+IGTHA+ ++ + + KL + ++DEQHRFGV QR K Sbjct: 348 LLTGSSKTRERRETLSALADGSLSILIGTHAILEERVAFRKLGMAVIDEQHRFGVAQRSK 407 Query: 414 LTQKA--TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471 L K T PH+L+M+ATPIPRTL +T GD+++S I E P GRKPI TV I + + + Sbjct: 408 LWGKNVLTLPHILVMSATPIPRTLAMTMYGDLEVSVIDEMPPGRKPITTVQIAEKKKETL 467 Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDK 530 + ++ G++ Y + P IE +ES+F ++ + E F + +HGR+S DK Sbjct: 468 YSLINETINRGQQIYVVFPMIEGTEESDFANLEVGYKEYVERFGEERVVYVHGRLSAEDK 527 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 M+ F +G +L+ATTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S Sbjct: 528 AEQMERFASGEVPILLATTVIEVGVNVPNATVMVINDAQRFGLAQLHQLRGRVGRGGDKS 587 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQP 649 C+L+ L ++ R+ + T+DGF IAEED++ R G++ G +QSG + IA P Sbjct: 588 YCLLVTPDDLQGDAKQRIDTMVATQDGFKIAEEDMRLRGFGQMEGTRQSGTLAGISIADP 647 Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685 +LL + R D ++L P L + RI L Sbjct: 648 VADYNLLALTRLDVNYLLDYSPLLDKPDTELYRINL 683 >gi|229006131|ref|ZP_04163819.1| ATP-dependent DNA helicase recG [Bacillus mycoides Rock1-4] gi|228755207|gb|EEM04564.1| ATP-dependent DNA helicase recG [Bacillus mycoides Rock1-4] Length = 685 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 232/681 (34%), Positives = 387/681 (56%), Gaps = 25/681 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G++ S L ++ ++ LL + P + D + ++E+ E VT Sbjct: 11 PVTDVKGIGEETSELLHEMGIHTVSH------LLEHFPYRYED-YAMKDLAEVKHEERVT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G + Q ++ ++ + G IT + F R K E +T+TGK Sbjct: 64 VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLKLDE--TVTITGKW 121 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188 + + I + H+ V +E VYS+ L+V ++ I +AL + E Sbjct: 122 DQHRQTISISELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGSSIEEM 177 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248 + LL + EA +H P +D + AR R Y+E Q+ + +RK + Sbjct: 178 LPDGLLGRYKLLPRYEALRALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQALRKMER 234 Query: 249 KEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 + G ++ K ++ +PF T +Q + +I++DM RM R+LQGDVGSGKT Sbjct: 235 ESSKGTKKDISMKELEEFTDALPFPLTGAQRRVVSEIIKDMQSPYRMNRLLQGDVGSGKT 294 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +VA IA+ AA A Q +M P ILA+QHY+ + + + + VE++T ++ A RR+ Sbjct: 295 VVAAIALYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFNMNVELLTSSVKGARRREV 354 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 L ++ G+ I++GTHAL QD + +++L LVI DEQHRFGV QR L +K +P VL MT Sbjct: 355 LAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 414 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T+ G++D+S I E PAGRK I+T + ++ V+ ++ +++G++AY Sbjct: 415 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLERVLGFVEKEVNKGRQAYV 474 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545 ICP IEE ++ + ++ ++ + L H+ + ++HGR+S +KE VM+ F ++L Sbjct: 475 ICPLIEESEKLDVQNAIDLHSMLIHHYQGKFQVGLMHGRLSSQEKEDVMEKFSENKVQIL 534 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+ P S+ Sbjct: 535 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGK 593 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAK 664 R+ ++ T DGF+++E+DL+ R G+ G KQSG+P+F +A +HD LE AR+DA Sbjct: 594 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETARQDAA 652 Query: 665 HILTQDPDLTSVRGQSIRILL 685 ++ + + + ++R+ L Sbjct: 653 VLVDSEAFWHNEQYAALRVYL 673 >gi|319939812|ref|ZP_08014168.1| ATP-dependent DNA helicase RecG [Streptococcus anginosus 1_2_62CV] gi|319811025|gb|EFW07340.1| ATP-dependent DNA helicase RecG [Streptococcus anginosus 1_2_62CV] Length = 671 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 236/669 (35%), Positives = 378/669 (56%), Gaps = 26/669 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL+ GVG K + +K+ DLL Y P + D + + E+ + Sbjct: 3 LHQPLTVLPGVGPKSAEKFTKL------GIESLQDLLLYFPFRYEDFKSK-NVIELEDGE 55 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 ++G + ++ Q + ++ E+ L + L + G I + GK Sbjct: 56 KAVVSGVVVTPANVQYYGYKRNRLRFTIKQDEVVLAINFFNQPYLADKVEVGSTIAIFGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186 K K + + I +D ++ VY + G+S K+I A + +L Sbjct: 116 WDKAKASLTGMK---ILAQVEDD----LQPVYRVVQGISQASLVKVIKTAFDQGLELLLE 168 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + LL++ +A +H P+ +++ A R+ ++EL Q+ L +++ + Sbjct: 169 ENLPQVLLERYQLLGRNQAVRAMHFPKNLTEYK---QALRRIKFEELFYFQMQLQVLKHE 225 Query: 247 FKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 K G+ I + + +K +PF T +QE ++ +ILQDM M R+LQGDVGSG Sbjct: 226 TKDASQGLIIPWQADLLEKKKATLPFELTAAQERSLNEILQDMKSPAHMNRLLQGDVGSG 285 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA +AM A AG Q+ +M P ILA+QH++ + + +II ++TG M A RR Sbjct: 286 KTVVAGLAMYATYTAGLQSALMVPTEILAEQHFDSLSQLFPELRII--LLTGGMKPAERR 343 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 +ALE I GQ +I+GTHAL Q+ + Y++L LVI+DEQHRFGV QR L +K P VL+ Sbjct: 344 QALEAIEAGQVDMIVGTHALIQEGVTYHRLGLVIIDEQHRFGVGQRRILREKGNNPDVLM 403 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + PAGRKPI T + +++ V++ L+ L G + Sbjct: 404 MTATPIPRTLAITAFGDMDVSIINQMPAGRKPIITRWVKHEQLEIVLDWLRKELQRGAQV 463 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ + L +F + +A++HG+M +K+++M FK G Sbjct: 464 YVISPLIEESEVLDLKNAIALEEELKAYFGDKTHVALLHGKMKSDEKDAIMQDFKEGKTD 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG++ S +L+ +P +++ Sbjct: 524 ILVSTTVIEVGVNVPNATVMLIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TES 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T DGF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A Sbjct: 583 GKKRMKIMTETTDGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIVEDYPILEEARKVA 642 Query: 664 KHILTQDPD 672 I++ PD Sbjct: 643 SQIVST-PD 650 >gi|120609293|ref|YP_968971.1| ATP-dependent DNA helicase RecG [Acidovorax citrulli AAC00-1] gi|120587757|gb|ABM31197.1| ATP-dependent DNA helicase RecG [Acidovorax citrulli AAC00-1] Length = 708 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 231/676 (34%), Positives = 362/676 (53%), Gaps = 49/676 (7%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 +R IDL + P + D + + + I ++ S QL+ RR + ++DGT Sbjct: 19 SRDIDLALHLPLRYEDETRITPLRNVRDGDTAQIEATVTA-SEVQLRPRRQLVVTVDDGT 77 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IE 157 G L FF K + G ++ + G++K M+HP + + P + Sbjct: 78 GTCELRFFSFYPSHQKTLAV-GARLRIRGEVKGGFWGRQMLHPAFRLAGGE---LPAALT 133 Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQ-------KKSFPSIAEAFN 207 VY GL ++ IV AL R+ + +P +E + + +S+ ++ +A Sbjct: 134 PVYPTTAGLPQPYLRRAIVSALQRVDLSETIPPGLEPPIPRFLGEGGGGRSWWTLRDALV 193 Query: 208 IIHNPRK----AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI-----NVE 258 +H+P A + + PA +RL +ELLA Q++ L +++ + + P+ E Sbjct: 194 FLHHPTPDVALATLEDHSHPAWQRLKAEELLAQQLSQLEAKRE-RDRLRAPVLRPAPGGE 252 Query: 259 GKIA--QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316 G A +++L +PF T +Q +I D+++ M R+LQGDVGSGKT+VA ++ A Sbjct: 253 GGAALHERLLAALPFGLTAAQRRVCAEIAADLARAVPMHRLLQGDVGSGKTVVAALSAAV 312 Query: 317 AVEAGGQAVIMAPIGILAQQHYE----FIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372 ++AG Q +MAP ILA+QH+ +++ + V + G + R L + Sbjct: 313 CMDAGWQCALMAPTEILAEQHFRKLIGWLEPLLAASGRRVAWLAGGQKKKERAAMLALVE 372 Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL----KLTQKATAPHVLLMTA 428 G+A +++GTHA+ Q+ +++ L L ++DEQHRFGV QRL KL + PH+L+M+A Sbjct: 373 SGEAALVVGTHAVIQEQVRFRNLALAVIDEQHRFGVAQRLALRRKLADQGMEPHLLMMSA 432 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488 TPIPRTL ++ D+D+S I E P GR PI T +I +R DEVIER+ ++ G++ YW+ Sbjct: 433 TPIPRTLAMSYYADLDVSTIDELPPGRTPIVTKLIADSRKDEVIERIGAQVASGRQVYWV 492 Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSS---------IAIIHGRMSDIDKESVMDSFKN 539 CP IEE + + + L E + ++H RM +K++VM+ F Sbjct: 493 CPLIEESEALDLSNATATHLELSEALQGDPAHGQAPVMVGLLHSRMPPAEKKAVMELFTA 552 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 GT +L++TTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG S+C+LLY Sbjct: 553 GTMGVLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGSAASACVLLYSTG 612 Query: 600 ----LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 L + + RL + T+DGF IA DL+ R GE LG +QSG P A L Sbjct: 613 ESGRLGETARDRLRAMAETQDGFEIARRDLEIRGPGEFLGARQSGAPMLRFADLATDTLL 672 Query: 656 LEIARKDAKHILTQDP 671 LE AR+ A +L P Sbjct: 673 LEWARETAPRMLDGHP 688 >gi|326335996|ref|ZP_08202172.1| DNA helicase RecG [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691793|gb|EGD33756.1| DNA helicase RecG [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 700 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 245/685 (35%), Positives = 375/685 (54%), Gaps = 30/685 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L P+ RGVG + + L + N + DLL P+ +IDR KI ++ + Sbjct: 4 LETPIEHLRGVGTQRATLLKNELQVAN-----YQDLLHLFPTRYIDRTQYYKIQDLRDSS 58 Query: 69 I-VTITGYISQHSSFQLQKRRPYKIL--LNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 V I G I + + +R +++ DGT + L++F+ ++ LK+ + Sbjct: 59 AEVQIIGRIIHLKTVTGKNKRQQRLVATFTDGTASMELIWFH-PSQWLKDHLLLNVPYVI 117 Query: 126 TGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-- 182 G+ MVHP Q+ I+AVY L+ + I + RL Sbjct: 118 FGRCSLFAGTFSMVHPEMETLEEHQNTLQGNIQAVYPSTEKLTK---RGITQRVMRRLFE 174 Query: 183 -------PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235 E + ++LQ EA IH P+ + + A+ RL +EL Sbjct: 175 TLFHEVGKDFQETLPNEMLQPLRLLPKGEALFQIHFPQSQ---DLLAKAQFRLKLEELFY 231 Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRM 294 Q+ L+ KK G G + +PF T++Q+ IK+I DM+ +M Sbjct: 232 IQLQLIQKNYLNKKLKGFLFPKVGDYFNTFYYQYLPFPLTEAQKRVIKEIRNDMATGAQM 291 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R+LQGDVG+GKT+VAL AM A++ QA +MAP ILAQQH++ I +T + + + Sbjct: 292 NRLLQGDVGAGKTIVALFAMLLALDNHYQACLMAPTEILAQQHFQGISSLLAHTNVHIAL 351 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 +TG+ R + + +GQ I+IGTHAL +D ++++ L L I+DEQHRFGV+QR KL Sbjct: 352 LTGSTKTKERHLIHQSLENGQLQIVIGTHALLEDKVRFHNLGLAIIDEQHRFGVEQRSKL 411 Query: 415 TQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 K PHVL+M+ATPIPRTL ++ GD+DIS I E P GRKPIKT+ ++ + Sbjct: 412 WHKNELPPHVLIMSATPIPRTLAMSLYGDLDISVIDELPPGRKPIKTIHQYDTHRGKIYQ 471 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDK 530 L +++G++ Y + P IEE + +F+++ E + L F + +IA++HG++ +K Sbjct: 472 FLHDEITKGRQIYVVYPLIEESEALSFKNLTEGYQQLCSAFPAPEYTIAMVHGQLKPEEK 531 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 E+ M F+ G ++++ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG E S Sbjct: 532 EAQMQLFQEGKAQIMVATTVIEVGVNVPNASVMLIESAERFGLSQLHQLRGRVGRGAEQS 591 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 CIL+ LS +S TR+ + T DGF IAE DLK R G+++G +QSG+ IA Sbjct: 592 YCILMTDVKLSHDSRTRMETMVATNDGFQIAEVDLKLRGPGDLMGKQQSGVLALKIADLV 651 Query: 651 LHDSLLEIARKDAKHILTQDPDLTS 675 +LL++AR A ++ DP+LT Sbjct: 652 KDGALLKVARDYATDLIHIDPELTD 676 >gi|218265097|ref|ZP_03478685.1| hypothetical protein PRABACTJOHN_04395 [Parabacteroides johnsonii DSM 18315] gi|218221586|gb|EEC94236.1| hypothetical protein PRABACTJOHN_04395 [Parabacteroides johnsonii DSM 18315] Length = 698 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 248/686 (36%), Positives = 381/686 (55%), Gaps = 53/686 (7%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG K + L K A + + DLLFY P +IDR K++E++ + + + G I Sbjct: 14 GVGPKKAEILQK-----EAGISSYEDLLFYFPYKYIDRSRFYKVAEVTGDMPYIQLKGRI 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 + + R DGTG I L++F + + + G V GK + + Sbjct: 69 LFFDTVGEGRTRRLIGKFTDGTGTIDLVWF-KGINYVMDKIKTGVDYIVFGKPTEFGHIY 127 Query: 137 IMVHPHYI--------------FHNSQD------VNFPLIEAV-YSLPTGLSVDLFKKII 175 + HP F+N+ + +N ++ + Y+L +GL+ L + + Sbjct: 128 NIPHPDIDTLDQADKVANGLTPFYNTSEKMKKSFLNSRAVQNLQYTLLSGLNWTLPETLP 187 Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235 L+R+ ++P FP EA +H P A+ RL +DEL Sbjct: 188 PAVLNRIRMMP------------FP---EAIRNVHFPESVDKLR---KAQLRLKFDELFF 229 Query: 236 GQIALLL---MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292 Q+ +L +RK K I P +V +PF T +Q+ +++I DM Sbjct: 230 IQLNILRSSNLRKLKLKGIVFP-SVGDYFNTFYKEYLPFELTNAQKRVVREIRADMGSGR 288 Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352 +M R+LQGDVGSGKTLVAL++M AV+ QA +MAP ILA QHY + + ++ I V Sbjct: 289 QMNRLLQGDVGSGKTLVALLSMLLAVDNHCQACMMAPTEILATQHYATVMGFLKDMDIKV 348 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 ++TG+ + R K L IA G+ I+IGTHAL ++++ + L L I+DEQHRFGV+QR Sbjct: 349 ALLTGSTKKKERNKILPAIASGEIQIVIGTHALIEETVVFSSLGLAIIDEQHRFGVEQRS 408 Query: 413 KL-TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471 +L T+ + PHVL+MTATPIPRTL +T GD+D+S I E P GRKPI+TV N+ ++ Sbjct: 409 RLWTKNSIVPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTVHRYDNKKAQL 468 Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530 + L+ + +G++ Y + P IE ++ +++++ E F + E F + ++HG+M DK Sbjct: 469 YDFLRKEIGQGRQVYVVYPLIEGSEKLDYKNLEEGFETFKEVFPEYKVCMVHGKMKAADK 528 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 E+ M F +G ++L+ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG E S Sbjct: 529 EAEMQKFISGEAQILMATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGRGAEQS 588 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQP 649 C+L+ LS + RL ++ ++ +GF IAE DL+ R G++ G +QSG L IA Sbjct: 589 YCVLVSSYKLSNETRKRLEIMVSSNNGFEIAEADLRLRGHGDLEGTRQSGEGIDLKIANL 648 Query: 650 ELHDSLLEIARKDAKHILTQDPDLTS 675 +L+ AR A+ +L +DPDL S Sbjct: 649 AADGQILQYARDIAQEVLNEDPDLLS 674 >gi|260062801|ref|YP_003195881.1| ATP-dependent DNA helicase RecG [Robiginitalea biformata HTCC2501] gi|88784369|gb|EAR15539.1| ATP-dependent DNA helicase RecG [Robiginitalea biformata HTCC2501] Length = 701 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 244/709 (34%), Positives = 381/709 (53%), Gaps = 38/709 (5%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 +P PL+ +GVG + L + F DLL++ P+ +ID+ KI E+ Sbjct: 4 DPRNTPLAYLKGVGPGRARLLESELGLKT-----FRDLLYFFPNRYIDKSRYYKIRELER 58 Query: 67 ERI-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 V + G I + + ++ + D TGE+ L++F R + + G + Sbjct: 59 SSAEVQLIGKIVHLKTVEQKRGKRLVATFRDDTGEMELVWF-RSQKWFRERLKLGEPYVI 117 Query: 126 TGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYS-----LPTGLSVDLFKKIIVEAL 179 G++ M HP + Q ++ VY G+S L + + L Sbjct: 118 FGRVNWYNGAFSMPHPDLELLSAHQQQKRIRMQPVYPSTEKLTRQGISNRLLTQWVAAVL 177 Query: 180 SRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSP------ARERLAYDE 232 +++ VLPE + +L EA ++ PR + A+ RL ++E Sbjct: 178 AQVREVLPETLPDRIL---------EALQLLPKPRSLVQIHFPDSNALLARAQARLKFEE 228 Query: 233 LLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQ 290 L Q+ALL + + KK I G G+ ++ +PF T +Q+ I++I D+ Sbjct: 229 LFYIQLALLSKKHERKKRIRGYLFEQVGERFTAFYKDHLPFDLTGAQKRVIREIRADLGS 288 Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350 +M R+LQGDVGSGKT+VA++ + A++ G QA ++AP ILAQQH+ + + + + Sbjct: 289 NAQMNRLLQGDVGSGKTIVAVLTILLALDNGYQACLVAPTEILAQQHFNAVSELLEPLGL 348 Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410 V ++TG++ + R+ L ++ G I+IGTHA+ + +++ L L I+DEQHRFGV Q Sbjct: 349 PVGLLTGSVKEKDRKPLLAGLSDGSLPILIGTHAVLEPRVKFNNLGLAIIDEQHRFGVAQ 408 Query: 411 RLKLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469 R KL +K PH+L+MTATPIPRTL ++ GD+DIS I E P GRKP++TV+ Sbjct: 409 RAKLWKKNKRPPHILVMTATPIPRTLAMSLYGDLDISLIDELPPGRKPVRTVLRGDRDRL 468 Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMS 526 V LK + +G++AY + P I+E + +++ +++ F S+ F ++I+HG+M Sbjct: 469 RVFGFLKDEIRKGRQAYIVYPLIQESEAMDYKDLMDGFESISREFPQPDFQVSIVHGQMK 528 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 KE M F G ++++ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG Sbjct: 529 PEAKEYEMQRFAEGKTQIMVATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGRG 588 Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646 + S CIL+ LS+ + TRL + T DGF IAE DLK R G +LG +QSG+ I Sbjct: 589 ADQSYCILMCGEKLSEEARTRLQTMARTNDGFEIAETDLKLRGPGNLLGTQQSGVLSLRI 648 Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695 A LL+ AR+ A+ +L DP L + +R L Q E FQ Sbjct: 649 ADLVRDRELLQSAREFARQLLLADPGLEQAENRVVRTRL---QQMEVFQ 694 >gi|150003059|ref|YP_001297803.1| ATP-dependent DNA helicase RecG [Bacteroides vulgatus ATCC 8482] gi|294775914|ref|ZP_06741413.1| ATP-dependent DNA helicase RecG [Bacteroides vulgatus PC510] gi|149931483|gb|ABR38181.1| ATP-dependent DNA helicase RecG [Bacteroides vulgatus ATCC 8482] gi|294450283|gb|EFG18784.1| ATP-dependent DNA helicase RecG [Bacteroides vulgatus PC510] Length = 698 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 245/668 (36%), Positives = 381/668 (57%), Gaps = 21/668 (3%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITG 74 +GVG + + L+K +N + + DLL+Y P ++DR I EI + + G Sbjct: 12 LQGVGPQRATVLNKELNLFSLH-----DLLYYFPYKYVDRSRLYYIHEIDGNMPYIQLKG 66 Query: 75 YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134 I + ++R +DGTG I L++F +L++ + + V GK Sbjct: 67 EILSFETLGEGRQRRLVGHFSDGTGIIDLVWFQGIKYLLEH-YKTRTEYIVFGKPTVFNG 125 Query: 135 RIIMVHPHYIFHNSQDVNFPLIEAVYS----LPTG-LSVDLFKKIIVEALSRL-PVLPEW 188 RI + HP ++ ++ Y+ + G L+ +K++ AL+ L L E Sbjct: 126 RINVAHPDMDPSGELTLSTMGLQPYYNTTERMKRGFLNSHGLEKLMKNALALLQEPLAET 185 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248 + L+++ S+ EA IH P K+ E A+ RL ++EL Q+ +L K + Sbjct: 186 LPPRLVEEHHLMSLDEAIRNIHFP---KNPELLRKAQYRLKFEELFYVQLNILRYSKDRQ 242 Query: 249 KEI-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 ++ G+ G+I +N+PF T +Q+ IK+I +DM +M R+LQGDVGSGK Sbjct: 243 RKYRGLRFERVGEIFNTFYSQNLPFELTGAQKRVIKEIRKDMGSGRQMNRLLQGDVGSGK 302 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366 TLVAL++M A++ G QA +MAP ILA QHYE I+K+ + VE++ G++ R K Sbjct: 303 TLVALMSMLIALDNGYQACMMAPTEILAAQHYETIRKFLFGMDVRVELLMGSVKGKKREK 362 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLL 425 L+ + G I+IGTHA+ +D++ + L +VI+DEQHRFGV QR KL K PHVL+ Sbjct: 363 ILKDLLTGDVQILIGTHAVLEDTVGFSSLGMVIIDEQHRFGVAQRAKLWSKNVCPPHVLV 422 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T GD+D+S I E P GRKPI+T+ NR + ++ + EG++ Sbjct: 423 MTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTIHQFDNRRASLYASIRKQIEEGRQI 482 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544 Y + P I+E ++ + +++ E + + F ++ +HG+M +K++ M F +G ++ Sbjct: 483 YIVYPLIKESEKMDIKNLEEGYELICAEFPDCQVSKVHGKMKPAEKDAEMQRFVSGETQI 542 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 ++ATTVIEVG++V +AS+++IENAE FGL+QLHQLRGRVGRG + S CIL+ L++ + Sbjct: 543 MVATTVIEVGVNVPNASVMVIENAERFGLSQLHQLRGRVGRGADQSYCILVTTYKLTEET 602 Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDA 663 RL ++ T DGF IAE DLK R G++ G +QSG+ L IA LL+ R A Sbjct: 603 RKRLEIMVQTNDGFEIAEADLKLRGPGDLEGTQQSGVAFDLKIADIARDGQLLQYVRDVA 662 Query: 664 KHILTQDP 671 I+ +DP Sbjct: 663 NRIVDEDP 670 >gi|77414524|ref|ZP_00790670.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae 515] gi|77159422|gb|EAO70587.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae 515] Length = 671 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 244/669 (36%), Positives = 375/669 (56%), Gaps = 29/669 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L +P+S +G G K + K+ + DLL Y+P + D + + E+ Sbjct: 3 LQSPISNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEK 56 Query: 69 IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 V ITG + ++ Q KR L G + + FF + L + G+++ V Sbjct: 57 AV-ITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQP--YLADKIELGQEVAVF 113 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA--LSRLPV 184 GK K+ I + + +D P VY + G+S K I A +S Sbjct: 114 GKWDATKSAITGMK---VLAQVEDDMQP----VYRVAQGISQSTLIKAIKSAFEISAHLE 166 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 L E + LL+K ++A +H P KD A R+ ++EL Q+ L +++ Sbjct: 167 LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVLK 223 Query: 245 KQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 + K E G+PI + + ++PF T +Q+ ++ +IL DMS M R+LQGDVG Sbjct: 224 SENKSETNGLPILYSKHAMETKISSLPFILTNAQKRSLDEILSDMSSGAHMNRLLQGDVG 283 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT++A ++M AA AG Q+ +M P ILA+QHY +++ + I I+T M A Sbjct: 284 SGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELFPDLSI--AILTSGMKAAV 341 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 +R L IA+G +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR +K P V Sbjct: 342 KRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPDV 401 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL +T+ G++D+S I E PAGRKPI T + ++ V+E +K L + Sbjct: 402 LMMTATPIPRTLAITAFGEMDVSIIDELPAGRKPIITRWVKHEQLGTVLEWVKGELQKDA 461 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGT 541 + Y I P IEE + + ++ V L +F + +A++HGRM + +K+++M FK+ Sbjct: 462 QVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQXFKDKK 521 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S +L+ +P + Sbjct: 522 SHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGYKQSYAVLVANPK-T 580 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 + R++++ T DGF++AE DLK R GEI G +QSG+P+F +A +LE AR+ Sbjct: 581 DSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARR 640 Query: 662 DAKHILTQD 670 A I+ + Sbjct: 641 VASDIVKDN 649 >gi|225572202|ref|ZP_03781066.1| hypothetical protein RUMHYD_00496 [Blautia hydrogenotrophica DSM 10507] gi|225040374|gb|EEG50620.1| hypothetical protein RUMHYD_00496 [Blautia hydrogenotrophica DSM 10507] Length = 685 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 234/679 (34%), Positives = 373/679 (54%), Gaps = 43/679 (6%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK--ISEISEERIV 70 L +GVG+K ++ N T DLL Y+P ++ Y P I ++ E + Sbjct: 7 LRDIKGVGEKTEQLFGRL----NLQTTE--DLLHYYPRNY--EVYAPAVPIGQLKENAVQ 58 Query: 71 TITGYI-SQHSSFQLQKRRPYKILLNDGTGE---ITLLFFYRKTEMLKNVFFEGRKITVT 126 T+ G+I S+ +S Q+ R IL E ++L +F+ L+ +G Sbjct: 59 TVAGFIASKAASAQV---RNLNILTTSIVSEGEKLSLTWFH--APYLRKTLKQGSYFVFR 113 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186 G++ K R++M HP + + ++ +Y L GL+ K + L + Sbjct: 114 GRVVKKNGRMVMEHPEIFTPAAYEEILNRMQPIYGLTAGLTNKTVTKYVRLLLENQALEG 173 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E++ D+ ++ A IH P KD + AR RL +DE L +++ +++++ Sbjct: 174 EYLPLDVRERYRLADYNFAIQNIHFP---KDRDSLIAARSRLVFDEFLFFILSVWMLKEK 230 Query: 247 FKKEIGI-PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + P+ + +K+L N+P+ TK+Q + +++ QD+ + M R++QGDVGSG Sbjct: 231 TQSAVNYYPMKPVWE-TEKLLENLPYRLTKAQRNVWREVEQDLCRDRLMSRLIQGDVGSG 289 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE---------IIT 356 KT++A +AM + G QA +M P +LA QHY+ + ++ E ++T Sbjct: 290 KTILAFLAMILTAQNGYQAALMVPTEVLAVQHYKAL------CGLLSEHGLGDCRPILLT 343 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G+ +R+ +IA G+ ++I+GTHAL Q+ ++Y+KL LVI DEQHRFGV+QR LT Sbjct: 344 GSTTAKEKRERYAQIASGEVNLIVGTHALIQEKVEYHKLALVITDEQHRFGVRQREALTT 403 Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 + PHVL+M+ATPIPRTL + GD+DIS I E PA R PIK ++ + + + ++ Sbjct: 404 RGAVPHVLVMSATPIPRTLAIILYGDLDISVIDELPASRLPIKNCVVNTSYRPKAYQFME 463 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVM 534 + G++AY ICP +EE + + +V+E L F I+I +HG+M +K +M Sbjct: 464 KQILMGRQAYVICPMVEESEGLDVENVLEYTQKLKSIFPPEISICSLHGKMKPKEKNQIM 523 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 + F G K+L++TTV+EVG++V +A+++++ENAE FGLAQLHQLRGRVGRG E S CI Sbjct: 524 EDFSAGKIKILVSTTVVEVGVNVPNATVMMVENAERFGLAQLHQLRGRVGRGTEQSYCIF 583 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 + K RL +L + DGF IA EDLK R G++ GI+QSG +F +A Sbjct: 584 MQGN--DKEVSKRLKILGQSNDGFFIASEDLKLRGPGDLFGIRQSGEMQFQLADIYQDSG 641 Query: 655 LLEIARKDAKHILTQDPDL 673 LL+ A + A+ IL D L Sbjct: 642 LLKSASEAARDILDLDSCL 660 >gi|219850480|ref|YP_002464913.1| ATP-dependent DNA helicase RecG [Chloroflexus aggregans DSM 9485] gi|219544739|gb|ACL26477.1| ATP-dependent DNA helicase RecG [Chloroflexus aggregans DSM 9485] Length = 862 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 237/693 (34%), Positives = 378/693 (54%), Gaps = 75/693 (10%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLL++ P + D R I E+ T+ G ++ + + ++ ++D TG I Sbjct: 160 DLLYHFPRRYDDVRSRRTIDELQVGAEETVIGEVTDVRTIGTGPKLRVRVEVSDETGSIE 219 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY---------IFHNSQDVNF 153 +FF ++ + G+ I ++GK+ + P + + H + V Sbjct: 220 AIFFNQR--WIAQQIRVGQTIVLSGKVTVFGGKRQFTSPRWERYTPDPDALLHTGRLV-- 275 Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 ++ L GL + +++I + + + P +P+ + + + + EA IH P Sbjct: 276 ----PIHPLTQGLHENQARRLIKQVVDTVAPRIPDHLPPERCAQAGLLPLGEALTQIHFP 331 Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272 + E + AR RL +DE L Q+ +L ++ +++E+G+P ++ ++ ++LR +PF Sbjct: 332 ---TNHESLAAARRRLGFDEFLFIQLGVLQRKRLWQQEMGLPFTIDLQVHAELLRLLPFR 388 Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332 T +Q+ AI +I D+ + + M R+LQGDVGSGKT+VA A+ AV G Q +MAP I Sbjct: 389 LTAAQQRAINEIFADLQRPSPMARLLQGDVGSGKTVVAAAALLQAVANGFQGALMAPTEI 448 Query: 333 LAQQHYEFIKK-------------------YTQN-----------------TQII----- 351 LA+QH + +K+ Y Q QII Sbjct: 449 LAEQHAKNLKQLLSRVPVPRRSSEAMDGEQYRQTDWRAQLDPEEAARLNEIVQIIGMTPE 508 Query: 352 ---------VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402 V ++TG++ RR+ L+ IA G+ +++GTHAL +++Q+ +L LV+VDE Sbjct: 509 EDMGGHGVRVALLTGSLGTRERRRVLDGIARGEIDVVVGTHALITETVQFARLGLVVVDE 568 Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462 QHRFGV+QRL+L K PH+L+MTATPIPRTL LT GD+D+S + E+P GR+ I+T Sbjct: 569 QHRFGVEQRLRLKNKGCNPHMLVMTATPIPRTLTLTIYGDLDVSVLDERPPGRQEIRTRR 628 Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL-HEHFTS-SIAI 520 I ++ ++ ++EG++ Y ICP +EE ++ + S E + L HE F +A+ Sbjct: 629 ISRLEREKAYRHIRKQVAEGRQVYVICPLVEESEKLDLPSAEEMYEKLQHEVFPDLRVAL 688 Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580 +HG+MS +K+ VM +F++ +L++T VIEVGIDV +A+ I+IE AE FGLAQLHQ R Sbjct: 689 LHGKMSAREKDGVMRAFRDHQYDILVSTAVIEVGIDVPNATTIVIEGAERFGLAQLHQFR 748 Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 GRVGRG S CIL+ ++ S RL+ L+ T DGF +AE DL+ R GE G +QSG Sbjct: 749 GRVGRGSHQSYCILISDSD-NQQSKERLAALEQTNDGFQLAEFDLQLRGPGEFFGTRQSG 807 Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 P +A+ + LL AR+ A+ IL+ DP L Sbjct: 808 TPDLKMAR-QGDTRLLSEARRMAEAILSDDPAL 839 >gi|326315383|ref|YP_004233055.1| ATP-dependent DNA helicase RecG [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372219|gb|ADX44488.1| ATP-dependent DNA helicase RecG [Acidovorax avenae subsp. avenae ATCC 19860] Length = 708 Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust. Identities = 232/675 (34%), Positives = 362/675 (53%), Gaps = 47/675 (6%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 +R IDL + P + D + + + I ++ S QL+ RR + ++DGT Sbjct: 19 SRDIDLALHLPLRYEDETRITPLRNVRDGDTAQIEATVTA-SEVQLRPRRQLVVTVDDGT 77 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IE 157 G L FF K + G ++ + G++K M+HP + + P + Sbjct: 78 GTCELRFFSFYPSHQKTLAV-GARLRIRGEVKGGFWGRQMLHPAFRLAGGE---LPAALT 133 Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQ-------KKSFPSIAEAFN 207 VY GL ++ +V AL R+ + +P +E + + +S+ ++ +A Sbjct: 134 PVYPTTAGLPQPYLRRAVVGALQRVDLSETIPPGLEPPIPRFLGEGGGGRSWWTLRDALV 193 Query: 208 IIHNPRK----AKDFEWTSPARERLAYDELLAGQIALLLM---RKQFKKEIGIPINVE-G 259 +H+P A + + PA +RL +ELLA Q++ L R + + + P+ E G Sbjct: 194 FLHHPTPDVALATLEDHSHPAWQRLKAEELLAQQLSQLEAKRERDRLRAPVLRPVPGEQG 253 Query: 260 KIA--QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317 A +++L +PF T +Q+ +I D+++ M R+LQGDVGSGKT+VA ++ A Sbjct: 254 GPALHERLLAALPFGLTAAQQRVCAEIAADLARPVPMHRLLQGDVGSGKTVVAALSAAVC 313 Query: 318 VEAGGQAVIMAPIGILAQQHYE----FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373 ++AG Q +MAP ILA+QH+ +++ + V + G + R L + Sbjct: 314 MDAGWQCALMAPTEILAEQHFRKLIGWLEPLLAASGRRVAWLAGGQKKKERAAMLALVES 373 Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL----KLTQKATAPHVLLMTAT 429 G+A +++GTHA+ QD +++ L L ++DEQHRFGV QRL KL + PH+L+M+AT Sbjct: 374 GEAALVVGTHAVIQDQVRFRNLALAVIDEQHRFGVAQRLALRRKLADQGMEPHLLMMSAT 433 Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489 PIPRTL ++ D+D+S I E P GR PI T +I +R DEVIER+ ++ G++ YW+C Sbjct: 434 PIPRTLAMSYYADLDVSTIDELPPGRTPIVTKLIADSRKDEVIERIGAQVASGRQVYWVC 493 Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSS---------IAIIHGRMSDIDKESVMDSFKNG 540 P IEE + + + L E + ++H RM +K++VM+ F G Sbjct: 494 PLIEESEALDLSNATATHVELSEALQGDPARGQAPVMVGLLHSRMPPAEKKAVMELFTAG 553 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP- 599 T +L++TTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG S+C+LLY Sbjct: 554 TMGVLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGSAASACVLLYSTGE 613 Query: 600 ---LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 L + + RL + T+DGF IA DL+ R GE LG +QSG P A LL Sbjct: 614 GGRLGETARDRLRAMAETQDGFEIARRDLEIRGPGEFLGARQSGAPMLRFADLATDTLLL 673 Query: 657 EIARKDAKHILTQDP 671 E AR+ A +L P Sbjct: 674 EWARETAPRMLDGHP 688 >gi|260909993|ref|ZP_05916680.1| DNA helicase RecG [Prevotella sp. oral taxon 472 str. F0295] gi|260635943|gb|EEX53946.1| DNA helicase RecG [Prevotella sp. oral taxon 472 str. F0295] Length = 699 Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust. Identities = 247/682 (36%), Positives = 377/682 (55%), Gaps = 46/682 (6%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + LSK +N F DLL Y+P ++DR +I+++ + V + G+I Sbjct: 14 GVGPRKKEILSKELNIKT-----FGDLLEYYPYKYVDRTQIFRIAQLQGDMPYVQVKGHI 68 Query: 77 SQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 F + R+ + DG L++F + T+ + N + G + V GK R Sbjct: 69 LSFEEFDMGPRKKRLVAHFTDGWNVADLVWF-QGTKYVLNTYKVGVEYIVFGKPSVYGGR 127 Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKK--IIVEALSRLP---------- 183 HP + L E P + D KK I A+ +L Sbjct: 128 YQFAHPDI----DEATELKLAEMGMQ-PHYGTTDRMKKSGITSRAMEKLTKGLLEQMQAP 182 Query: 184 ---VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 LP +I L S EA +H P + + A+ RL ++EL Q+ + Sbjct: 183 LAETLPPFITNAL----HLVSRDEAMRGVHYPHNTDELQ---RAQVRLKFEELFYVQLNI 235 Query: 241 L----LMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRML 295 L R++++ G + G+ N+PF T +Q+ + +I DM +M Sbjct: 236 LRYANFHRRKYR---GYHFSKIGQYFNDFYHNNLPFELTCAQKRVMHEIRNDMDSGRQMN 292 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R+LQGDVGSGKTLVAL++M AV+ G QA +MAP ILA+QH I++ Q T + E++ Sbjct: 293 RLLQGDVGSGKTLVALMSMLIAVDNGFQACMMAPTEILAEQHLATIQQMLQGTGVTAELL 352 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 TG + R L+R+ GQ HI++GTHAL +D++Q+ L L +VDEQHRFGV+QR KL Sbjct: 353 TGIVKGKRRADVLQRLVSGQLHILVGTHALLEDTVQFAHLGLAVVDEQHRFGVKQRAKLW 412 Query: 416 QKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 K PHVL+MTATPIPRTL +T GD+D+S I E P GRKPI+T+ N+ + Sbjct: 413 GKNDNPPHVLVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTLHKYDNQTTSLYAG 472 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533 ++ ++ G++ Y + P IEE ++++ +++ E + +L + F ++ IHGRM +KE+ Sbjct: 473 IRQQVNLGRQVYIVYPLIEESEKTDLKNLEEGYKALTDIFPEYKMSKIHGRMKSKEKEAE 532 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M F +G ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CI Sbjct: 533 MARFASGETQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQSYCI 592 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELH 652 L+ + LS + R+ ++ T DGF IAE DLK R G++ G +QSGM L IA Sbjct: 593 LVTNRALSAETRKRIDIMCETNDGFRIAEADLKLRGPGDLEGTQQSGMAFDLKIANIARD 652 Query: 653 DSLLEIARKDAKHILTQDPDLT 674 +L+++AR +A+ I+ +DP+ Sbjct: 653 GALVQMARDEAQKIIERDPNCN 674 >gi|325685873|gb|EGD27939.1| DNA helicase RecG [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 679 Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust. Identities = 229/673 (34%), Positives = 370/673 (54%), Gaps = 26/673 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 +F P++ +GVG K + L + DLLFY P + + P + ++ + + Sbjct: 7 IFRPVTALKGVGAKTAEALQSL------GIYSIYDLLFYFPYRYDELENLP-LDQLEDGQ 59 Query: 69 IVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124 V + G ++ + + F K R +K+ ++ +I ++ F+ + + K + G++I Sbjct: 60 KVMLKGIVATNPYQNYFGYHKSRVSFKLRIDH---DIIMVNFFNQPWLTKQLSV-GQEIA 115 Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LP 183 V GK L+ + + + + NS D P +YS+ + + +I A++ + Sbjct: 116 VYGKYD-LRKQSLSAYKLLVNKNSDDGMAP----IYSVNRQIKQKKLQTMIDLAIAESMD 170 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 + + +DL + + + +H+P KD AR + E Q+ L LM Sbjct: 171 EMGNAVPEDLRKHYRLMADQDLVIAMHHP---KDLTEAKEARRSAVFREFFLFQMQLALM 227 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 Q K G + + + K+ +++PF+ + Q+ I +I DM +M R+LQGDVG Sbjct: 228 SSQNKSHSGYAKHYDLEEIGKLTKSLPFALSPDQKKVINEIFADMFVDQQMQRLLQGDVG 287 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA+ A+ AV AG QA +M P ILA QHY I ++ + V ++TG+ Sbjct: 288 SGKTVVAVFAIYGAVTAGYQAALMVPTEILANQHYHKISAMLEDFGVRVALLTGSTKTME 347 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ + +A G +++IGTHAL Q+ + + KL LVI+DEQHRFGV QRL L K P + Sbjct: 348 RREIYKELADGSINVVIGTHALIQEQVAFKKLGLVIIDEQHRFGVVQRLALINKGDRPDI 407 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPR+L LT GD +S+I PAGRKPIK+ +++DEV ++ L+EG Sbjct: 408 LAMTATPIPRSLALTVYGDTALSEIRHLPAGRKPIKSYWKTSSQLDEVYSLMRQQLAEGF 467 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTC 542 + Y + P I E + + + + L F + ++HG+M+ DKE +MD F G Sbjct: 468 QIYAVTPLISESETIDLENAEALHDRLAGEFPDQEVVLLHGKMAAADKEQIMDRFAAGEV 527 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 +L+ T+VIEVG+DV +A++++I +A+ FGL+QLHQLRGR+GRG+ S C+ L P ++ Sbjct: 528 DILVTTSVIEVGVDVANANLMVIFDADRFGLSQLHQLRGRIGRGQTQSYCVFLADPK-TE 586 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662 R+ ++ T DGF +AEEDLK R EG++ G QSG+P+F ++ +AR + Sbjct: 587 AGKQRMKIVAETNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRTGSVVSDYQVMVVARDE 646 Query: 663 AKHILTQDPDLTS 675 AK I+ DPDL + Sbjct: 647 AKRIVQADPDLKA 659 >gi|332881843|ref|ZP_08449486.1| ATP-dependent DNA helicase RecG [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680187|gb|EGJ53141.1| ATP-dependent DNA helicase RecG [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 698 Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust. Identities = 235/643 (36%), Positives = 367/643 (57%), Gaps = 20/643 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101 DLL+ P IDR I E++ + V I G I + ++R DG G + Sbjct: 34 DLLYTFPYKHIDRTRLYYIHELTADMPYVQIRGQILSFDTEGEGRKRRLVAHFTDGQGVV 93 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161 L++F + + + + V G+ RI + HP + +N ++ Y+ Sbjct: 94 DLIWF-NGIKYVLSAYKTRTDYIVFGRPSVFNGRINIAHPDVDKADELRLNTMGLQPYYT 152 Query: 162 LP-----TGL---SVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213 GL S++ F + E L +PE + L+ + S+ EA +H P Sbjct: 153 TTDKMKRAGLNSRSIEHFTATLFERLD--AGIPETLPPYLVSSLNLVSLDEALRHVHYPT 210 Query: 214 KAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEIGIPINVEGKIAQKIL-RNIPF 271 A+D A+ RL ++EL Q+ ++ R++ +K G G++ +N+PF Sbjct: 211 SAEDLR---KAQFRLKFEELFYIQLNIIKYARERRQKYRGYVFVRVGELFHTFYEKNLPF 267 Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331 T +Q+ I++I QDM +M R+LQGDVGSGKTLVAL+++ A++ G QA IMAP Sbjct: 268 ELTGAQKRVIREIRQDMGSGRQMNRLLQGDVGSGKTLVALMSILIALDNGFQACIMAPTE 327 Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391 ILA+QHY + + VE++TG + R+ L+ + G+ I++GTHA+ +D++ Sbjct: 328 ILAEQHYVTFQNLLFGMPVRVELLTGTVKGKRRQAVLDGLKDGEVRILVGTHAVLEDTVL 387 Query: 392 YYKLILVIVDEQHRFGVQQRLKL-TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + L +V++DEQHRFGV QR +L T+ + PHVL+MTATPIPRTL +T GD+D+S I E Sbjct: 388 FKSLGMVVIDEQHRFGVAQRARLWTKNSNPPHVLVMTATPIPRTLAMTLYGDLDVSVIDE 447 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P GRKPI+T+ NR + + L+ L+EG++AY + P I+E ++ + +++ E + L Sbjct: 448 LPPGRKPIQTIHQFDNRRESLYRGLRSQLNEGRQAYVVYPLIKESEKMDIKNLEEGYEQL 507 Query: 511 HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 I+ +HG+M +KE+ M F +G ++L+ATTVIEVG++V +AS+++IENAE Sbjct: 508 CRDLPEYKISRVHGKMKAAEKEAEMQDFISGKTQILVATTVIEVGVNVPNASVMVIENAE 567 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629 FGLAQLHQLRGRVGRG + S CIL+ LS ++ R+ ++ T DGF IAE DLK R Sbjct: 568 RFGLAQLHQLRGRVGRGADQSYCILVTKYQLSADTRKRIQIMTETNDGFEIAEADLKLRG 627 Query: 630 EGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKHILTQDP 671 G++ G +QSG+ L +A +L++AR+ A+ +L DP Sbjct: 628 PGDLEGTQQSGVSFTLRLANLARDGQVLQLARETAEKVLDDDP 670 >gi|222109587|ref|YP_002551851.1| ATP-dependent DNA helicase recg [Acidovorax ebreus TPSY] gi|221729031|gb|ACM31851.1| ATP-dependent DNA helicase RecG [Acidovorax ebreus TPSY] Length = 723 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 236/680 (34%), Positives = 357/680 (52%), Gaps = 51/680 (7%) Query: 40 RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99 R IDL + P + D I + V I ++ S Q++ RR + + DGTG Sbjct: 33 RDIDLALHLPLRYEDETRITPIRSARDGDTVQIEATVTA-SEVQMRPRRQLVVTVEDGTG 91 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159 L FF K + G ++ V G+IK M+HP F ++ + V Sbjct: 92 SCELRFFSFYPSHQKTMAV-GARLRVRGEIKGGFWGRQMLHP--AFRKAEGDLPAALTPV 148 Query: 160 YSLPTGLSVDLFKKIIVEALSRL------------PVLPEWIEKDLLQKKSFP-SIAEAF 206 Y L ++ + AL+R+ P +P W+ + P S+ EA Sbjct: 149 YPTVAQLPQAYLRRAVASALTRVELPETLPPGLEPPAVPSWVRGNGQNGLLRPWSLREAL 208 Query: 207 NIIHNPRKAKDF------EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK 260 +H+P A D + + PA +RL +ELLA Q++ L +++ + + + + Sbjct: 209 LFLHHP--APDVALATLQDHSHPAWQRLKAEELLAQQLSQLTAKRERARLRAPALRPQAQ 266 Query: 261 IA-----QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315 +++L +PFS T +Q ++I +D+++ M R+LQGDVGSGKT+VA +A Sbjct: 267 AGSTPLHEQLLGVLPFSLTAAQRRVGEEIARDLARPVPMHRLLQGDVGSGKTVVAALAAT 326 Query: 316 AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII----VEIITGNMPQAHRRKALERI 371 ++AG Q +MAP ILA+QH+ + + Q V + G + R + L RI Sbjct: 327 VCMDAGWQCALMAPTEILAEQHFAKLIGWLQPLLAARGRQVAWLVGGQKKKERAEMLARI 386 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK----ATAPHVLLMT 427 G+A +++GTHA+ Q+ +++ L L ++DEQHRFGV QRL L +K PH+L+M+ Sbjct: 387 ESGEAALVVGTHAVIQEQVRFKNLALAVIDEQHRFGVAQRLALRKKLQHAGMEPHLLMMS 446 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL ++ D+D+S I E P GR PI T +I +R DEV+ER+ ++ G++ YW Sbjct: 447 ATPIPRTLAMSYYADLDVSTIDELPPGRTPIVTKLIADSRKDEVVERIGAQVAAGRQVYW 506 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIA---------IIHGRMSDIDKESVMDSFK 538 +CP IEE + + + L E A ++H RM +K++VMD FK Sbjct: 507 VCPLIEESEALDLSNATATHAELSEALQGDAAHGRAPVMVGLLHSRMPAAEKKAVMDLFK 566 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G +L++TTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG S+C+LLY Sbjct: 567 GGQMGVLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYST 626 Query: 599 P----LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 L + + RL + T DGF IA DL+ R GE LG +QSG A Sbjct: 627 GDSGRLGETARDRLKAMAETTDGFEIARRDLEIRGPGEFLGARQSGDALLRFADLATDTL 686 Query: 655 LLEIARKDAKHILTQDPDLT 674 LLE AR+ A +L + P L Sbjct: 687 LLEWARETAPQMLDRHPLLA 706 >gi|310659145|ref|YP_003936866.1| recg [Clostridium sticklandii DSM 519] gi|308825923|emb|CBH21961.1| RecG [Clostridium sticklandii] Length = 685 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 238/658 (36%), Positives = 360/658 (54%), Gaps = 29/658 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYK------ILLND 96 DLL ++P + DR + KI+++ E V I G I + ++P K I + D Sbjct: 33 DLLMHYPMRYEDRRHFKKIADVHFEEKVCIEGKI-----ISVDVKKPKKNMVILRICIYD 87 Query: 97 GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI 156 T + L F +++ GR I G K++ + P F N +I Sbjct: 88 NTQKAFLTVF--NNPYIQSQLTIGRTIKAYGTAKRINGICNISAPEIDFDNYSKKT-GII 144 Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLP-EWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215 VY L GL D K I L L + E++ Q+ + +A IH P Sbjct: 145 YPVYPLTRGLFNDEIIKSIKWILQSLNIKELEYLNSKYRQQLRLCELDDAIKNIHFP--- 201 Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI---LRNIPFS 272 KD A+ RL +DE I L ++ KE GI + KI + +PF Sbjct: 202 KDPLLIKVAKFRLVFDEFFLLNIGLSSIKHGLVKEPGIKHESSEETKSKIEAFVEELPFE 261 Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332 TK+Q +++I+ DM+ M R++QGDVGSGKT++A+IA A G Q +MAP I Sbjct: 262 LTKAQSKVMQEIIDDMASDKPMQRLVQGDVGSGKTVIAMIAAYYAYINGYQCALMAPTEI 321 Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392 LA+QHY +NT + ++TG+ +R E + +G I+IGTHAL +D +++ Sbjct: 322 LAKQHYNNFLDIFKNTNAEIRLLTGSTTAKSKRTVYEELLNGSCDIVIGTHALIEDKVKF 381 Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451 L LVI DEQHRFGV+QR KL K +L+MTATPIPRTL GD+DIS I + Sbjct: 382 NNLSLVITDEQHRFGVRQRSKLLLKNHLTVDMLVMTATPIPRTLAFILHGDLDISVIDQM 441 Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511 P+GRKPIKT ++V + K ++ G++ Y +CP IEE + + ++ E F L Sbjct: 442 PSGRKPIKTFASKKQEANKVYDFAKQEIALGRQIYIVCPLIEESENLDIQAANELFEKLS 501 Query: 512 EHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 E +A++HG+M +K+ +MD+F +G +LI+TTVIEVG++V ++S++II++A+ Sbjct: 502 ESVFKGYKLALLHGKMKAQEKQEIMDAFSSGRIDILISTTVIEVGVNVPNSSVMIIQDAQ 561 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQ 627 FGL+QLHQLRGRVGRGE S C+LLY KN Y R+ +++N+ DGF I+++DL+ Sbjct: 562 RFGLSQLHQLRGRVGRGEYQSYCVLLYE---GKNKYIEQRMKIMQNSNDGFEISQKDLEL 618 Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685 R GE G +Q G+ F +A H S+L +A+ A ++++DP+L + ++I+I L Sbjct: 619 RGPGEYFGTRQHGLDNFKLADISKHISILNLAKDFADEVMSEDPELKNEENKAIKIEL 676 >gi|297584000|ref|YP_003699780.1| ATP-dependent DNA helicase RecG [Bacillus selenitireducens MLS10] gi|297142457|gb|ADH99214.1| ATP-dependent DNA helicase RecG [Bacillus selenitireducens MLS10] Length = 677 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 238/665 (35%), Positives = 372/665 (55%), Gaps = 30/665 (4%) Query: 12 PLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70 P+S G+G +Y L + I+ +DLL + P + + +P ++E V Sbjct: 4 PVSAVSGIGPRYVEILESMGIHT-------VMDLLTHFPFRYENHEIQP-LAEAEHNERV 55 Query: 71 TITGYISQHS-----SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 T+ G + HS F+ +K R LL DG + F+ + M K + K+ V Sbjct: 56 TVQGTV--HSVPELRMFKGKKSRLTVRLLADGL--LVKAVFFNQPYMKKQISLND-KLIV 110 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPV 184 +G K + +I I + + +E VYS+ L + ++ I A++ + Sbjct: 111 SGTFDKHRLQI----SGAIVKAEEKIKRGGLEPVYSVKGDLKQNKMRQFIEAAVADFVEG 166 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 +PE + LL++ + AF +H P KD + AR R+AY+ELL Q+ + R Sbjct: 167 VPELLPDSLLERYQLLARNRAFYYLHFP---KDESFFLQARRRMAYEELLLFQLKMQWFR 223 Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 + + K E G + + L ++PF T +QE + +IL D+ RM R+LQGDVG Sbjct: 224 QTERKAESGQQKSWSKEAFDSFLLSLPFKLTDAQERVLTEILTDLGGAERMNRLLQGDVG 283 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT++A A+ A +G Q +M P ILA+QH E + + + I+G+ Sbjct: 284 SGKTVIAAAALYANYLSGFQGALMVPTEILAEQHSESLASLFNGMGMTIAHISGSSKTKE 343 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 +R+ALER+A G+ ++ GTHAL Q+ + ++KL LVI DEQHRFGV+QR L K P V Sbjct: 344 KREALERLATGEVDLVTGTHALIQEGVSFHKLGLVITDEQHRFGVEQRRTLRNKGLRPDV 403 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPRTL +++ GD+D+S I + PAGRKPI+T N + V++ + + +G Sbjct: 404 LFMTATPIPRTLAISAFGDMDVSTIDQLPAGRKPIETHWGKRNMLPRVMQFIDREIEKGH 463 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTC 542 +AY I P IEE + ++ ++ S E S+ ++HGR+ +K++VM +F+ Sbjct: 464 QAYVIAPLIEESEVLEVQNAIDLHKSFEEALPHRSVGLMHGRLHHEEKDAVMQAFQKNDV 523 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 ++L++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CILL P + Sbjct: 524 QILVSTTVVEVGVNVPNATVMVIYDADRFGLAQLHQLRGRVGRGSDQSHCILLADPK-TD 582 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662 R+S++ T DGF ++ DL+ R GE G++QSGMPKF +A +LE ARKD Sbjct: 583 VGKERMSIMTETTDGFELSRRDLEMRGPGEFFGVRQSGMPKFKVADLVEDYRILETARKD 642 Query: 663 AKHIL 667 A+ I+ Sbjct: 643 ARTII 647 >gi|187778910|ref|ZP_02995383.1| hypothetical protein CLOSPO_02505 [Clostridium sporogenes ATCC 15579] gi|187772535|gb|EDU36337.1| hypothetical protein CLOSPO_02505 [Clostridium sporogenes ATCC 15579] Length = 679 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 248/681 (36%), Positives = 387/681 (56%), Gaps = 44/681 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSS--FIDRHYRPKISEISE 66 +++P++T +GVG K L K C N +DLL Y P FID + + K+S ++ Sbjct: 3 VYSPITTLKGVGPKTKEQLEK---CMIFN---IMDLLLYFPRDYEFIDNYSKDKLS--NK 54 Query: 67 ERIVTITGYISQHSSFQLQKR-RPYKIL----LNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + I+ + Q + + R R KIL NDG I +F + +KN F G Sbjct: 55 KVIIKV-----QVENIKRDVRTRTGKILTTIIFNDGEKAIVGSWFNQP--YIKNYFKIGE 107 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 + + G +++ + + ++ I N ++ V I Y L L +L K++ AL Sbjct: 108 EYILQGSLREYRG-TLTINNAQILKNKYAEKVEERKIIPKYPLKGDLKNNLLIKLVNSAL 166 Query: 180 SRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 + + LP W L++K F S+ ++ IH P K+ E + RL + ELLA Sbjct: 167 GNIAIGENLPRW----LIEKYKFISLDKSIRTIHKPENQKELE---ESIRRLKFQELLAY 219 Query: 237 QIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 + + +++ K GI V + + I+R++PF T +Q +++I +D ++ M Sbjct: 220 CLKIASLKEYLKTATEGIAFKVLEETSD-IIRSLPFKLTNAQNRVLEEIFKDQKKEKPMN 278 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R+LQGDVGSGKT++ALI + ++ G Q V++AP ILA QHYE K ++ + + ++ Sbjct: 279 RLLQGDVGSGKTIIALICLFNVIKNGYQGVMLAPTEILAIQHYEEALKLFKDFNLNIALL 338 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 G++ + +++ E++ G+ +IIGTHAL +D +++Y L +VI DEQHRFGV QR K+ Sbjct: 339 VGSVKASLKKEIKEKLKKGEIDLIIGTHALIEDDVEFYNLGMVITDEQHRFGVMQRSKML 398 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 K + L+M+ATPIPRTL L+ GD+D+S I E P GRK I T + + V Sbjct: 399 NKGRSIDTLVMSATPIPRTLTLSLYGDLDLSIIDELPPGRKKIDTYYVNDSYRKRVYNFA 458 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESV 533 +++G++ Y +CP +EEK+E N SV + +N L E + IAI+HG+M +K+++ Sbjct: 459 LKEINDGRQVYIVCPLVEEKEELNLNSVEKLYNDLKEDYFKEVEIAILHGKMKGKEKDAI 518 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M FK G K LI+TTVIEVG++V +A+++IIENAE FGLAQLHQLRGRVGRG+ S CI Sbjct: 519 MKEFKEGKIKALISTTVIEVGVNVPNATLMIIENAERFGLAQLHQLRGRVGRGKYKSYCI 578 Query: 594 LLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 L+ KN R+ ++K++ DGF +AEEDLK R GEI G +Q G L+A Sbjct: 579 LIAK---VKNDIIRKRMEIMKSSNDGFFVAEEDLKLRGGGEIFGFRQHGSSNLLLADVIE 635 Query: 652 HDSLLEIARKDAKHILTQDPD 672 LL+IA ++K I+ + + Sbjct: 636 DIHLLKIANVESKKIIDSNSE 656 >gi|229104417|ref|ZP_04235086.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock3-28] gi|228679115|gb|EEL33323.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock3-28] Length = 682 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 231/663 (34%), Positives = 375/663 (56%), Gaps = 33/663 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G + S L ++ ++ LL + P + D + ++E+ + VT Sbjct: 8 PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G + Q ++ ++ + G IT + F R K +T+TGK Sbjct: 61 VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRP--YYKQKLNLDETVTITGKW 118 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184 + + I + H+ V +E VYS+ L+V ++ I +AL S + V Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LP+ LL + EA +H P +D + AR R Y+E Q+ + +R Sbjct: 175 LPD----GLLNRYKLLPRYEALRALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227 Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 K + + G + Q+ + +PF T +Q + +IL+DM+ RM R+LQGDVG Sbjct: 228 KMERENSKGTKKEIPSTELQEFIDALPFPLTGAQRRVVDEILKDMTSPYRMNRLLQGDVG 287 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA I + AA A Q +M P ILA+QHY+ + + + + VE++T ++ A Sbjct: 288 SGKTVVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMAVELLTSSVKGAR 347 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L R+ G+ I++GTHAL Q + +++L LVI DEQHRFGV QR L +K +P V Sbjct: 348 RREILARLEQGEVDILVGTHALIQGEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D V+ ++ +++G+ Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEITKGR 467 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541 +AY ICP IEE ++ + ++ ++ + L H+ + ++HGR+S +KE +M F Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+ P S Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660 + R+ ++ T DGF+++E+DL+ R G+ G KQSG+P+F +A +HD LE AR Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645 Query: 661 KDA 663 +DA Sbjct: 646 QDA 648 >gi|264680588|ref|YP_003280498.1| ATP-dependent DNA helicase RecG [Comamonas testosteroni CNB-2] gi|262211104|gb|ACY35202.1| ATP-dependent DNA helicase RecG [Comamonas testosteroni CNB-2] Length = 725 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 234/666 (35%), Positives = 356/666 (53%), Gaps = 33/666 (4%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98 TR IDL + P + D + + V I ++ HS QL+ RR K+ ++DG+ Sbjct: 48 TRDIDLALHLPLRYEDETRIVALKNARDGETVQIEATVT-HSEVQLRPRRMLKVTVDDGS 106 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--DVNFPLI 156 L FF K + G ++ + G++K M+HP + + P+ Sbjct: 107 STCLLTFFSFYPSQQKTMA-PGARLRIRGEVKGGFWGRQMMHPAFRVAGGELPTALTPVY 165 Query: 157 EAVYSLPTG-----LSVDLFKKIIVEAL--SRLPVLPEWIEKDLLQKKSFPSIAEAFNII 209 A SLP ++ L + + E L + P + ++ ++ LQ + A + Sbjct: 166 PATASLPQAYLRRAIASALLRADLSETLPPGQSPPIAQFYGQNGLQPAY--DLRNALIFL 223 Query: 210 HNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM---RKQFKKEIGIPINVEGKIA 262 H+P + + PA +RL +ELLA Q++ R + + + P + Sbjct: 224 HHPTPDVALVTLEDHSHPAWQRLKAEELLAQQLSQYEAKRERARLRAPVLRPQAGMADLT 283 Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ L +PF T +Q+ + +I DM ++ M R+LQGDVGSGKT+VA ++ A +EAG Sbjct: 284 QQFLAQLPFGLTGAQQRVVGEIRADMERRIPMHRLLQGDVGSGKTVVAALSAVACIEAGW 343 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQII----VEIITGNMPQAHRRKALERIAHGQAHI 378 Q +MAP ILA+QH+ + + + V + G + R L + G+A + Sbjct: 344 QCALMAPTEILAEQHFGKLVGWLEPILAPLGKKVAWLAGAQKKKERAAMLALVESGEAAL 403 Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRT 434 ++GTHA+ Q+ +Q+ L L ++DEQHRFGV QRL L QK A PH+L+M+ATPIPRT Sbjct: 404 VVGTHAVIQEQVQFKNLALAVIDEQHRFGVAQRLALRQKLAATGMEPHLLMMSATPIPRT 463 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L ++ D+D+S I E P GR PI T +I +R DEVIER+ ++ G++ YW+CP IEE Sbjct: 464 LAMSYYADLDVSTIDELPPGRTPIVTKLISDSRKDEVIERIGAQVASGRQVYWVCPLIEE 523 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + + + L E + ++H RM +K++VM+ F G +L++TTVIEV Sbjct: 524 SEALDLSNATATHEYLSEMLPGVMVGLLHSRMPTAEKKAVMELFSAGVMGVLVSTTVIEV 583 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY----HPPLSKNSYTRLS 609 G+DV +AS+++IE++E FGL+QLHQLRGRVGRG S+C+LLY + LS RL Sbjct: 584 GVDVPNASLMVIEHSERFGLSQLHQLRGRVGRGAAASACVLLYSVNDNGRLSDTGKERLR 643 Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669 + T DGF IA DL+ R GE LG +QSG P A E LL+ AR+ A +L Q Sbjct: 644 AMAETNDGFEIARRDLEIRGPGEFLGARQSGAPMLRFADLEQDVMLLDWARELAPLMLEQ 703 Query: 670 DPDLTS 675 P L + Sbjct: 704 FPALAA 709 >gi|15836956|ref|NP_297644.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa 9a5c] gi|9105182|gb|AAF83164.1|AE003887_7 ATP-dependent DNA helicase [Xylella fastidiosa 9a5c] Length = 718 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 231/615 (37%), Positives = 349/615 (56%), Gaps = 37/615 (6%) Query: 92 ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQD 150 +L +D +T+ FF+ + + F G ++ G K + +VHP Y I +D Sbjct: 92 VLTDDAHHILTMRFFHFRAAQIAR-FTVGTRVRAYGVPKLGQYGWEIVHPSYRILAPGED 150 Query: 151 VNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLP------VLPEWIEKDLLQKKSFPSIA 203 V ++ VY + G+ + +++I EAL LP +LP+ DL P + Sbjct: 151 VRLNDCLDPVYPVIEGVGPAIVRQLIREALEHLPTDAVLELLPDVWLSDL----GLPMLR 206 Query: 204 EAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259 A I+H P D T PA++RL+ +ELLA Q++L R ++ + Sbjct: 207 TALLIMHRPPLNTDIARLMVGTHPAQQRLSLEELLAHQLSLRRQRIALQRHSAPALPDGA 266 Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319 + +L +PF T +Q+ I D+++ MLR++QGDVGSGKT+VA +A AVE Sbjct: 267 ALVASLLHALPFHLTAAQQQVFAQIAADVAKPVPMLRLVQGDVGSGKTVVAALAALLAVE 326 Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379 Q + AP +LA+QH+ ++ + + + V + + R +AL +A G A ++ Sbjct: 327 QNKQVALAAPTALLAEQHFINLRDWLEPLGVRVHWLAAKVTGKARLQALNDVASGDAQVV 386 Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATA---PHVLLMTATPIPRTL 435 +GTHAL Q+S+ ++ L L IVDEQHRFGV QRL L K ATA PH L+MTATPIPRTL Sbjct: 387 VGTHALMQESVVFHDLALTIVDEQHRFGVHQRLLLRDKGATAGIVPHQLVMTATPIPRTL 446 Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495 + + D+D+S I E P GR P++T ++ R E++ER+++ ++G++ YW+C I+E Sbjct: 447 AMAAYADLDVSVIDEMPPGRTPVQTNVLSAERRPELVERIRLACAQGRQVYWVCTLIDES 506 Query: 496 K--------ESN---FRSVVERFNSLHEHFTSS-----IAIIHGRMSDIDKESVMDSFKN 539 + SN RS V+ + +E ++ + ++HGRM +K+ M +FK Sbjct: 507 QTEAEQAPPSSNDIEHRSEVQAAQATYEALSAQLPGVRVGLVHGRMKAAEKQRTMRAFKC 566 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 +L+ATTVIEVG+DV +AS++IIENAE FGLAQLHQLRGRVGRG +SSC+LLY PP Sbjct: 567 NEIDVLVATTVIEVGVDVPNASLMIIENAERFGLAQLHQLRGRVGRGSVVSSCVLLYQPP 626 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 LS + RL +++ T DGF IAE+DL+ R GE+LG +Q+G+ F +A LL Sbjct: 627 LSMLARQRLEIMRQTNDGFAIAEKDLELRGPGELLGTRQTGLAAFRVADLARDAHLLPRV 686 Query: 660 RKDAKHILTQDPDLT 674 A +L + P L Sbjct: 687 YSLANMLLDESPQLA 701 >gi|163757124|ref|ZP_02164228.1| ATP-dependent DNA helicase [Kordia algicida OT-1] gi|161322945|gb|EDP94290.1| ATP-dependent DNA helicase [Kordia algicida OT-1] Length = 701 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 252/699 (36%), Positives = 380/699 (54%), Gaps = 41/699 (5%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 N L P+ +GVG + L K G FI+L P+ +ID+ K++E+ Sbjct: 4 NVLQTPIDYLKGVGPNRADLLRK--ELGIHTYQDFINLF---PNRYIDKTRYFKVNELQR 58 Query: 67 ERI-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 V + G I Q ++ + D TGE+ L++F R + +K+ + Sbjct: 59 NSSEVQVVGKIVHIKMVQQKRGKRLVATFVDATGEMELVWF-RGHKWIKDSLKLNTPYVI 117 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVD---------LFKKII 175 GK M HP + + ++ VY L+ L +++ Sbjct: 118 FGKTNWFNGTFSMPHPEMELLKEHEQSLRTAMQPVYPSTEKLNNKGITNRVINKLMQQLF 177 Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235 +E+ ++ E + +L + S EA IH P+ E + A+ RL ++EL Sbjct: 178 IESRTQFY---ETLPPTILNELKLISKTEALFNIHFPKSQ---ELLAKAQYRLKFEELFY 231 Query: 236 GQIALLLMRKQFKKEI-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNR 293 QI L+ K +I G P + G+ + N +PF T +Q+ IK+I D+ + Sbjct: 232 IQIQLITKNLIHKSKIKGFPFDQVGEKFNEFYANHLPFELTNAQKRVIKEIRNDLGSNAQ 291 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R+LQGDVGSGKT+VAL++M A++ QA IMAP ILA QHY I + + + V+ Sbjct: 292 MNRLLQGDVGSGKTIVALMSMLLAIDNDFQACIMAPTEILAIQHYNGIMELVKPLGLNVK 351 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++TG++ RR E + G HI+IGTHA+ +D +Q+ L L I+DEQHRFGV QR K Sbjct: 352 LLTGSVKTKDRRVIHEMLEDGSLHILIGTHAILEDKVQFKNLGLAIIDEQHRFGVAQRAK 411 Query: 414 LTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 L K T PH+L+MTATPIPRTL ++ GD+D+S I E P GRK IKTV +R D Sbjct: 412 LWHKNTFPPHILVMTATPIPRTLAMSLYGDLDVSVIDELPPGRKAIKTV----HRYDS-- 465 Query: 473 ERLKVV------LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHG 523 RLKV +++G++ Y + P I+E ++ +++ +++ + S+ F I+I+HG Sbjct: 466 NRLKVFRFIRDEIAKGRQIYIVYPLIQESEQLDYKDLMDGYESIAREFPMPDYQISIVHG 525 Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583 +M DK+ M+ F G ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRV Sbjct: 526 KMKPADKDFEMNRFIKGETQIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRV 585 Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643 GRG E S CIL+ LS + TRL + T DGF IAE DLK R G I+G +QSG+ Sbjct: 586 GRGAEQSFCILMTSHKLSADGKTRLETMVRTSDGFEIAEVDLKLRGPGNIMGTQQSGVLN 645 Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682 IA + +L+ AR A+ +L DP L + +++R Sbjct: 646 LKIADIVKDNDILKTARYFAQQVLKADPSLMAPEHKAVR 684 >gi|270308438|ref|YP_003330496.1| ATP-dependent DNA helicase [Dehalococcoides sp. VS] gi|270154330|gb|ACZ62168.1| ATP-dependent DNA helicase [Dehalococcoides sp. VS] Length = 818 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 224/657 (34%), Positives = 360/657 (54%), Gaps = 33/657 (5%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLL+Y P+ +D KIS++ TI + Q + RR + +L D TG + Sbjct: 148 DLLYYFPNRHLDYSRLKKISQLEAGSEQTIIANVWQSKVNYMGGRRSTEAVLGDDTGNMR 207 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVY 160 ++F M++N+ R + ++G++ R + P + + + ++ + VY Sbjct: 208 AVWF-NNPYMVRNLKPNAR-VVLSGRVSIFNGRPVFESPEWEELPDEADLIHTGRLVPVY 265 Query: 161 SLPTGLSVDLFKKIIVEALS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 L GL ++++ + P + +++ +D L++ +AEA H P E Sbjct: 266 PLTAGLHQRSLRRLMKNFIDISTPGISDFLPEDTLKRNRLLPLAEAIRQAHFPDTE---E 322 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 AR RLA+DEL Q+ +L +K+++++ G + V + +PF T +Q Sbjct: 323 LKDTARNRLAFDELFILQLGVLAKKKRWQEQTGRALKVNLPAIDHFISRLPFKLTDAQTK 382 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 + DI D+S+ M R+LQG+VGSGKT+VA+I++ A G Q MAP ILA+QH++ Sbjct: 383 CLADIKADISKNVPMSRLLQGEVGSGKTIVAVISLFTAAANGLQGAFMAPTEILAEQHFK 442 Query: 340 FIKKYTQNTQIIVEIITG-------------------NMPQAHRRKALERIAHGQAHIII 380 + + + + ++ G +M + + E+I G+ I I Sbjct: 443 SVTRLFASIAKVSTLLDGVHTFEGLLDHPLRVALMISDMKSSQKDILKEKIKKGEIDIAI 502 Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440 GTHAL Q I++ L L ++DEQHRFGV+QR L K PH+L+MTATPIPRTL LT Sbjct: 503 GTHALIQKEIRFKSLGLAVIDEQHRFGVEQRSALKSKGLNPHILIMTATPIPRTLALTLY 562 Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500 GD+D+S I E P GR+ IKT + + + ++ + G++A+ ICP +EE + Sbjct: 563 GDLDLSVIDELPPGRQSIKTRWLKPEQRNSAYNFIRKQIEAGRQAFIICPLVEESEAIQA 622 Query: 501 RSVVERFNSL-HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 ++ + +L E F +A++HGRM+ +KES+M F G +L++T V+EVGID+ Sbjct: 623 KAATAEYETLSSEVFPEYKVALLHGRMNAAEKESIMKHFNEGKMDILVSTPVVEVGIDIP 682 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618 +A+++++E+A+ FGL+QLHQ RGRVGRG E S C+ L P S RLS++++T+DGF Sbjct: 683 NATVMLVESADRFGLSQLHQFRGRVGRGTEQSYCMFLAKNP-SLLGQERLSIIESTQDGF 741 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLT 674 +AEEDL+ R GE G +QSG+P +A + D LLE ARK+A + DP+L Sbjct: 742 KLAEEDLRLRGPGEFFGTRQSGLPDLRMAS--ISDVGLLEQARKEATRLFESDPELN 796 >gi|229019051|ref|ZP_04175891.1| ATP-dependent DNA helicase recG [Bacillus cereus AH1273] gi|229025297|ref|ZP_04181716.1| ATP-dependent DNA helicase recG [Bacillus cereus AH1272] gi|228735988|gb|EEL86564.1| ATP-dependent DNA helicase recG [Bacillus cereus AH1272] gi|228742253|gb|EEL92413.1| ATP-dependent DNA helicase recG [Bacillus cereus AH1273] Length = 682 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 233/663 (35%), Positives = 377/663 (56%), Gaps = 33/663 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G + S L ++ ++ LL + P + D + ++E+ + VT Sbjct: 8 PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G + Q ++ ++ + G IT + F R K E +T+TGK Sbjct: 61 VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLKLDE--TVTITGKW 118 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184 + + I + H+ V +E VYS+ L+V ++ I +AL S + V Sbjct: 119 DQHRQTIAVSELHF----GPAVRQQEVEPVYSVKGKLTVKQVRRFIAQALKEYGDSIIEV 174 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LP+ + L + K P EA +H P +D + AR R Y+E Q+ + +R Sbjct: 175 LPDGL---LSRYKLLPRY-EALKALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227 Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 K + + G + Q+ +PF T +Q + +I++DM+ RM R+LQGDVG Sbjct: 228 KMERENSKGTKKEISSVELQEFTDALPFPLTGAQSRVVDEIMKDMTSPYRMNRLLQGDVG 287 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA IA+ A A Q +M P ILA+QHY+ + + + + VE++T ++ A Sbjct: 288 SGKTVVAAIALYGAKLAHYQGAMMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGAR 347 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L R+ G+ I++GTHAL QD + +++L LVI DEQHRFGV QR L +K +P V Sbjct: 348 RREILARLEQGEVDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D V+ ++ + +G+ Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541 +AY ICP IEE ++ + ++ ++ + L H+ + ++HGR+S +KE +M F Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+ P S Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660 + R+ ++ T DGF+++E+DL+ R G+ G KQSG+P+F +A +HD LE AR Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645 Query: 661 KDA 663 +DA Sbjct: 646 QDA 648 >gi|218514909|ref|ZP_03511749.1| ATP-dependent DNA helicase protein [Rhizobium etli 8C-3] Length = 431 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 192/416 (46%), Positives = 260/416 (62%), Gaps = 2/416 (0%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP+ L+PLF+P+S GVG K + L K++ + R IDLLF+ P + IDR +P Sbjct: 16 MRPAILDPLFSPISGLPGVGPKIAELLVKLLGRETPEDCRVIDLLFHAPFALIDRRNQPG 75 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I+ + IVTIT + +H K PY++ L+D TGE+TL+FF + L+ Sbjct: 76 IARAPQGAIVTITARVDRHQVPPRGKSNVPYRVFLHDETGELTLVFFRGQAAWLEKQLPI 135 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 ++TV+GK+ R MVHP YI + N PL+E +Y L GLS +KII AL Sbjct: 136 DAEVTVSGKVDWFNGRASMVHPDYIVRAEEAENLPLVEPIYPLTAGLSPKTLRKIIDAAL 195 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA-YDELLAGQI 238 R P LPEWI+ L QK+ P + R + P R + YDE LAGQ+ Sbjct: 196 PRFPELPEWIDPALAQKQGLPFYPRQLSTCCMSRATRPISTRRPRRGGGSPYDEFLAGQL 255 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 +L L+R++ +K G P+ G ++ KIL+ +PFSPT SQ AI DIL+DM+ RMLR+L Sbjct: 256 SLSLVRQRLRKVAGQPVLATGAVSGKILKTLPFSPTSSQNEAIADILKDMAGTERMLRLL 315 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKTLVAL++MAA +E+GGQAV+MAP ILA+QH+ I K+ + + +E++TG Sbjct: 316 QGDVGSGKTLVALMSMAAVIESGGQAVLMAPTEILARQHHATISKFAASAGLGIEVLTGR 375 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 R + LERIA G A I+IGTHALFQDS+ Y KL+L +VDEQHRFGV QRL+L Sbjct: 376 TKGREREEILERIASGAAQIVIGTHALFQDSVTYDKLMLAVVDEQHRFGVHQRLRL 431 >gi|168335018|ref|ZP_02693133.1| RecG-like helicase [Epulopiscium sp. 'N.t. morphotype B'] Length = 677 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 221/583 (37%), Positives = 340/583 (58%), Gaps = 21/583 (3%) Query: 94 LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153 ++DGT ++T++FF + +KN F G G +K N++ MV P Y Sbjct: 82 VSDGTEQMTIIFF--EQPYMKNNFHVGLIYNFYGTVKLKYNKLNMVSPSYQTLEKYTQQT 139 Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 LI VY+ LS + +K I A+ + + + I D++ K + +A IH P Sbjct: 140 KLI-PVYASTYQLSQFIIRKHIKNAIDIAICNVSDVIPTDIVAKHNLMPKRQAIENIHFP 198 Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK-KEIGI----PINVEGKIAQKILR 267 + F AR RL ++EL Q++L +++ F+ K+ G P+++E + Sbjct: 199 KDDASF---VEARRRLVFEELFLLQLSLYILKSDFRQKQAGTVKQSPVDLEA-----FVE 250 Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 +PF T +Q+ +K++ D+ R++QGDVGSGKT+VA IA+ V G Q+ +M Sbjct: 251 TLPFKLTAAQQRVVKEVAADLKLLGAANRLIQGDVGSGKTVVAAIALFIVVRNGFQSTLM 310 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 AP +LA+QH+EF++K + I V ++TG+ + + LE++A G I++GTHAL + Sbjct: 311 APTEVLARQHFEFLEKTFEAFDISVALLTGSTTKKQKMGLLEKLAKGDIDILVGTHALIE 370 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D++ Y KL LVI DEQHRFGV+QRL L QK P VL MTATPIPRTL L GD+DIS Sbjct: 371 DNVVYAKLGLVITDEQHRFGVRQRLSLAQKGDFPDVLAMTATPIPRTLALILYGDMDIST 430 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE-KKESNFRSVVER 506 I E P GR PIKT + + + ++ +S G++ Y ICP +EE +K N + V+ Sbjct: 431 IDELPPGRTPIKTNAVDSRYYARIYKFMREHVSNGRQCYIICPMVEENEKVENVKDVISY 490 Query: 507 FNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 L + +A+ +HG+M DK +M+ F NG +L++TTV+EVG++V +A+II+ Sbjct: 491 AEKLQAEEFAGLAVEYLHGKMKAKDKNKIMERFANGEIDILVSTTVVEVGVNVPNATIIL 550 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624 IENAE FGL+QLHQLRGRVGRG S CIL+ +K++ RL +++ T DGF IA+ D Sbjct: 551 IENAERFGLSQLHQLRGRVGRGSYESFCILV-SDSYNKDTRARLKIMQETTDGFKIADTD 609 Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 L+ R GE G +Q G+ + IA +L++ +++ ++I+ Sbjct: 610 LQLRGSGEFFGTRQHGLLEMKIANMYTDIDVLKVVQQEVENIM 652 >gi|313159146|gb|EFR58521.1| ATP-dependent DNA helicase RecG [Alistipes sp. HGB5] Length = 702 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 247/699 (35%), Positives = 376/699 (53%), Gaps = 33/699 (4%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE--ERIVTITGY 75 GVG+ + L K + D+L ++P +IDR +I+EI+E ++ Sbjct: 13 GVGEARARLLDKELGIRTLG-----DMLSHYPFRYIDRTKVYRIAEITEGAPTLLQFRAR 67 Query: 76 ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 I+ + +++ + + D TG L++F + K V GR+ + G+ + Sbjct: 68 ITGVAYAGTGRKKRFTAYVQDPTGSAELVWFQGIKWIEKRVEV-GREYLIFGRPSFYRGL 126 Query: 136 IIMVHP------HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-----PV 184 + M HP + ++ + + L L +II + + Sbjct: 127 LSMAHPELETMEQALSRKAESGMQGIYPSTEKLSNVLGAKGMYQIICNTWALVKDHITDC 186 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 +PE + + + +A+ IH P+ A E A+ RL +DELL Q+ + R Sbjct: 187 MPEAVRA----RYGLIPLRDAYYNIHFPQSA---EMLRQAQYRLKFDELLGIQLNVQSRR 239 Query: 245 -KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 ++ K G + + V G +PF T +Q+ +K+I QD +M R+LQGDV Sbjct: 240 TERLSKNNGFLFMKVGGVFNTFYNEKLPFPLTGAQKRVVKEIRQDTVTGFQMNRLLQGDV 299 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVAL++M AV+ G QA +MAP ILA+QH+ I + + + ++TG+ Sbjct: 300 GSGKTLVALMSMLLAVDNGFQACMMAPTEILARQHFATITRMLEGMDVKTAVLTGSSKVK 359 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAP 421 RR ALE IA G+ I+IGTHAL +D +Q+ L V++DEQHRFGV+QR +L T+ P Sbjct: 360 ERRLALEGIASGEVDILIGTHALIEDRVQFANLGFVVIDEQHRFGVEQRARLWTKNEQPP 419 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 H+L+MTATPIPRTL +T GD+D+S I E P GR+PIKTV + +K +++ Sbjct: 420 HILVMTATPIPRTLAMTLYGDLDVSVIDELPPGRRPIKTVHYTDAARLRLFGFMKQEIAK 479 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFK 538 G++ Y + P I+E + +++ + + + ++ F I HG+M DKE M FK Sbjct: 480 GRQVYVVYPLIKESEAMDYKDLTDGYEAISRDFPLPDYVTTICHGKMKPADKEESMRQFK 539 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 +G +++AT+VIEVG+DV +A++++IE+AE FGL+QLHQLRGRVGRG E S CIL+ Sbjct: 540 SGEADIMVATSVIEVGVDVPNATVMVIESAERFGLSQLHQLRGRVGRGGEQSYCILMSGE 599 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLE 657 LSK S RL + T DGF +AE DLK R G+I G QSGM L IA P L +L Sbjct: 600 KLSKESRARLQAMCETNDGFRLAELDLKLRGAGDINGTLQSGMAFDLKIANPTLDVQILT 659 Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696 ++R+ A ILT D DL+ + ++ L Y E F Sbjct: 660 VSREAAAAILTADRDLSLPEHRGLQELRRKYSGQEEIDF 698 >gi|82523774|emb|CAI78518.1| hypothetical protein [uncultured bacterium] Length = 694 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 223/670 (33%), Positives = 378/670 (56%), Gaps = 20/670 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYI--SQHSSFQLQKRRPYKILLNDGTGE 100 DL+++ P + DR + ++++ + T+ G + + K+ +++ ++DG+G Sbjct: 33 DLMYFFPRRYEDRRHIVPLAKVVVGQWQTVRGKVLLGEARKSWYTKKHVFEVAIDDGSGR 92 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPL--IE 157 I+ ++F + + + F GR++ GK+ + K+R+ MV P Y + + + L I Sbjct: 93 ISCVWFNQPYQA--HYFVPGRQVVCYGKVDQYKDRLQMVSPEYEVIEEDEKESLSLNRIV 150 Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216 +Y L G++ +K++ AL + L + + L K ++ + IH P+ Sbjct: 151 PMYPLTKGMTQRFIRKVVWAALGKYKEGLTDELPVPLRNKLHLYNLKRSIENIHFPQNEN 210 Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276 D A +R++++E Q++++L R ++ G + + +K F+ T + Sbjct: 211 D---QQEALKRISFEEFYFFQVSVMLRRLSITQKQGFAHVIPDVLTEKFSEGFGFNLTGA 267 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q I+DI +D+ + MLR+LQGDVGSGKTLVAL AA E Q+ +MAP ILA+Q Sbjct: 268 QNRVIQDIKEDLQKPTPMLRLLQGDVGSGKTLVALFGTLAAFENKHQSALMAPTEILAKQ 327 Query: 337 HYEFIKKYTQN---TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 HY+ I + + ++ G++ + K ++IA G +++GTHAL +++ + Sbjct: 328 HYDTICALMKKGPLKGMKAALLVGSLKDQEKEKVHKKIAAGTLDLVVGTHALITENVMFK 387 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L V++DEQH+FGV+QR L +K P VL+MTATPIPRTL +T GD+D+S I E P Sbjct: 388 DLSYVVIDEQHKFGVRQRALLAEKGRNPDVLIMTATPIPRTLCITLYGDLDVSVIDEMPP 447 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 GR I T EV + +K L EG++AY + P IEE ++S+ ++ E F + + Sbjct: 448 GRGKITTRHFKHENDKEVYQLVKKRLDEGRQAYIVYPIIEESEKSDLKAADEMFKNFKKK 507 Query: 514 FTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 + ++HG+M + + +M+ FK+G +L+ATTV+EVG+DV +A++++IE+AE F Sbjct: 508 EFKGYRVGLVHGQMKQQEAQKIMEQFKDGKIDVLVATTVLEVGVDVANATVMVIEHAERF 567 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631 GLAQLHQLRGR+GRG SSC+L+ ++ ++ R+S + T DGF IA+EDL R G Sbjct: 568 GLAQLHQLRGRIGRGVHDSSCLLIADLE-TEEAHKRISAICATNDGFKIAQEDLMIRGPG 626 Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQ-Y 690 G Q G+ + +A P +LE+AR++A+ +L DP L + G++ +IL + + Y Sbjct: 627 HFFGRHQHGLNELKVANPATQLDILELAREEAQELLQDDPKLDT--GKNYQILHVIQKRY 684 Query: 691 NEAFQFIRAG 700 Q + AG Sbjct: 685 PGYLQMVSAG 694 >gi|315223950|ref|ZP_07865795.1| DNA helicase RecG [Capnocytophaga ochracea F0287] gi|314946122|gb|EFS98126.1| DNA helicase RecG [Capnocytophaga ochracea F0287] Length = 724 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 251/715 (35%), Positives = 387/715 (54%), Gaps = 40/715 (5%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 N L P++ RGVG + + L ++ + DLL P+ +IDR KI+E+ Sbjct: 25 NILHTPINYLRGVGNQRAELLKTELSI-----YEYQDLLNLFPNRYIDRTKFYKINELQN 79 Query: 67 ERI-VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKI 123 V + G I + + ++ +++ D TG + L++F + + L+ Sbjct: 80 NNAEVQLVGKIVNLRTVESAHQKGTRLVATFVDDTGAMELVWF-KGLKWLRESLKINEPY 138 Query: 124 TVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182 + GK+ M HP + + I+ VY P+ + L K+ I + R Sbjct: 139 VIFGKLNFFGGTFSMPHPEMDLLSEFKKAGHSSIQPVY--PS--TEKLAKRNITNRVMRQ 194 Query: 183 PV----------LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232 V E + ++L + S EA IH P + A RL ++E Sbjct: 195 LVQTVFEEIGNSFAENLPDNILASMNLISKQEAMRNIHFPTNQT---LLTKASVRLKFEE 251 Query: 233 LLAGQIAL----LLMRKQFKKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287 L Q+ L LL +++F+ G P NV ++PF T +Q+ +K+I D Sbjct: 252 LFYIQVQLVRKNLLHKQKFQ---GQPFKNVGDAFMNFYNHHLPFPLTDAQKRVLKEIRAD 308 Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347 + +M R+LQGDVGSGKT+VAL+ M AV+ G QA +MAP ILA QHY+ I + + Sbjct: 309 VGSNAQMNRLLQGDVGSGKTIVALMTMLLAVDNGCQACLMAPTEILANQHYQNISELLKE 368 Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407 T + V ++TG+ R+ E++ G+ I+IGTHAL ++ +Q+ L L I+DEQHRFG Sbjct: 369 TGVTVALLTGSSKTKERKMLDEQLQSGELSILIGTHALLENKVQFRNLGLAIIDEQHRFG 428 Query: 408 VQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466 V+QR KL K T PH+L+MTATPIPRTL ++ GD+D+S I E P GRKPIKT+ N Sbjct: 429 VEQRSKLWHKNTIPPHILVMTATPIPRTLAMSVYGDLDVSIIDELPPGRKPIKTLHQFEN 488 Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHG 523 E E +K + +G++ Y + P IEE + +F+++ E ++ + F ++++HG Sbjct: 489 HRAETYEFIKKEIDKGRQVYVVYPLIEESEALDFKNLTEGYDYITASFPLPKYKVSMVHG 548 Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583 R+ +K+ M+ F ++++ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRV Sbjct: 549 RLKPTEKDVEMERFLRNETQIMVATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRV 608 Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643 GRG E S CILL +S ++ TR+ + T DGF IAE DLK R G+++G +QSG+ Sbjct: 609 GRGSEQSYCILLTGNKMSNDTRTRMETMVRTNDGFEIAEVDLKLRGPGDLMGTQQSGVLA 668 Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY-LYQYNEAFQFI 697 IA +L+ AR A +L DP+L + Q I LY L +Y + +I Sbjct: 669 LKIADLVKDQDILKAARFQAIDLLKADPNLELPKNQRIAHTLYQLQRYKNLWTYI 723 >gi|288929111|ref|ZP_06422956.1| ATP-dependent DNA helicase RecG [Prevotella sp. oral taxon 317 str. F0108] gi|288329213|gb|EFC67799.1| ATP-dependent DNA helicase RecG [Prevotella sp. oral taxon 317 str. F0108] Length = 699 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 243/679 (35%), Positives = 377/679 (55%), Gaps = 44/679 (6%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + LSK +N F DLL Y+P ++DR +I+++ + V + G+I Sbjct: 14 GVGPRKKEILSKELNINT-----FGDLLEYYPYKYVDRTQIYRIAQLQGDMPYVQVKGHI 68 Query: 77 SQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 F + R+ + DG L++F + + + + + G + V GK R Sbjct: 69 LSFEEFDMGPRKKRIVAHFTDGWNVADLVWF-QGAKYVLSTYKVGVEYIVFGKPSVYGGR 127 Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKK-IIVEALSRLP----------- 183 HP + L E G + + K I A+ RL Sbjct: 128 YQFAHPDI----DEATELKLAEMGMQPHYGTTERMKKAGITSRAMERLTKGLLEQMQAPL 183 Query: 184 --VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 LP +I L S +A +H P + + A+ RL ++EL Q+ +L Sbjct: 184 TETLPPFITNAL----HLVSRDQAMRGVHYPHNTDELQ---RAQMRLKFEELFYVQLNIL 236 Query: 242 ----LMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 R++++ G + G+ N+PF T +Q+ + +I +DM +M R Sbjct: 237 RYANFHRRKYR---GYNFSKIGQFFNSFYHNNLPFELTGAQKRVMHEIRKDMDSGRQMNR 293 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 +LQGDVGSGKTLVAL++M AV+ G QA IMAP ILA+QH +++ Q T + E++T Sbjct: 294 LLQGDVGSGKTLVALMSMLIAVDNGFQACIMAPTEILAEQHLATVQQMLQGTGVTAELLT 353 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G + R L+R+A GQ HI++GTHAL +D++Q+ L L +VDEQHRFGV+QR KL Sbjct: 354 GIVKGKRRADVLQRLASGQLHILVGTHALLEDTVQFAHLGLAVVDEQHRFGVKQRAKLWG 413 Query: 417 KA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 K+ PHVL+MTATPIPRTL +T GD+D+S I E P GRKPI+T+ N+ + + Sbjct: 414 KSDNPPHVLVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTLHKYDNQTTSLYAGI 473 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 + + G++ Y + P I+E ++++ +++ E + +L + F ++ IHG+M +KE+ M Sbjct: 474 RQQVGLGRQVYIVYPLIKESEKTDLKNLEEGYEALTDIFPEYKMSKIHGKMKSKEKEAEM 533 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F +G ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL Sbjct: 534 ARFASGETQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQSYCIL 593 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHD 653 + + LS + R+ ++ T DGF IAE DLK R G++ G +QSGM L IA Sbjct: 594 VTNRALSAETRKRIDIMCETNDGFRIAEADLKLRGPGDLEGTQQSGMAFDLKIANIARDG 653 Query: 654 SLLEIARKDAKHILTQDPD 672 +L+++AR +A+ I+ +DPD Sbjct: 654 ALVQLARDEAQKIVERDPD 672 >gi|332521832|ref|ZP_08398281.1| ATP-dependent DNA helicase RecG [Lacinutrix algicola 5H-3-7-4] gi|332042504|gb|EGI78706.1| ATP-dependent DNA helicase RecG [Lacinutrix algicola 5H-3-7-4] Length = 700 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 242/683 (35%), Positives = 381/683 (55%), Gaps = 31/683 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L P+ +GVG + L K + + DL+ P+ ++DR KI++++ Sbjct: 5 LQTPIDYLKGVGPNRADLLRKELGIHT-----YQDLINLFPNRYLDRTKYYKINQLNPST 59 Query: 69 I-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 V I G I+ ++ + D TG + L++F R + ++ + + G Sbjct: 60 AEVQIIGKITSFKEVAQKRGKRLVATFQDETGTMELVWF-RGQKWIRESLKKNVPYVIFG 118 Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLS-VDLFKKIIVEALSRLPV- 184 K + M HP + N ++ +Y LS + +++++ + L + Sbjct: 119 KTNLFGGKFNMPHPDIELKTEHEQNLRSTMQPIYPSTEKLSNKGITNRMMMKIMQNLFIE 178 Query: 185 ----LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 E + K++L+ S +EA IH P+ E A+ RL ++EL Q+ L Sbjct: 179 TGGKFVETLSKNILENLKIISKSEALFNIHFPKSP---ELLFKAQFRLKFEELFYIQLQL 235 Query: 241 LLMRKQFKKEI-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 +L K +I G P G + ++ +PF T +Q+ +K+I D+ +M R+L Sbjct: 236 ILKNLIHKSKIKGFPFENVGALFNTFFKHHLPFELTGAQKRVLKEIRADLGSNAQMNRLL 295 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKT+VAL++M A++ G QA +MAP IL+ QHY + + I ++++TG+ Sbjct: 296 QGDVGSGKTIVALMSMLMALDNGFQACLMAPTEILSVQHYNGLVDLCKELNISIKLLTGS 355 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 RR+ + + +G+ I+IGTHAL +D +++ L L I+DEQHRFGV+QR KL +K Sbjct: 356 SKTLERREIHDMLENGELDILIGTHALLEDKVKFKNLGLAIIDEQHRFGVKQRSKLWKKN 415 Query: 419 T-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID----EVIE 473 T PHVL+MTATPIPRTL ++ GD+DIS I E P GRK IKTV +R D +V + Sbjct: 416 TFPPHVLVMTATPIPRTLAMSVYGDLDISIIDELPPGRKTIKTV----HRYDSNRLKVFQ 471 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDK 530 L+ + + ++ Y + P I+E + +++ +++ + S+ F + I+I+HG+M DK Sbjct: 472 FLRSEIKKKRQVYIVYPLIQESAQMDYKDLMDGYESIARDFPAPEFQISIVHGKMKPADK 531 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 E M F G ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRVGRG E S Sbjct: 532 EFEMQRFIKGQTQIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVGRGAEQS 591 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 CIL+ LS+NS R+ + T DGF IAE DLK R G+I+G +QSG+ IA Sbjct: 592 YCILMTSHKLSENSKKRIETMVRTNDGFEIAEVDLKLRGPGDIMGTQQSGILNLRIADIV 651 Query: 651 LHDSLLEIARKDAKHILTQDPDL 673 + +L+ AR AK +L +DP L Sbjct: 652 KDNDILQHARYYAKKVLEKDPSL 674 >gi|228477237|ref|ZP_04061875.1| ATP-dependent DNA helicase RecG [Streptococcus salivarius SK126] gi|228251256|gb|EEK10427.1| ATP-dependent DNA helicase RecG [Streptococcus salivarius SK126] Length = 676 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 242/682 (35%), Positives = 383/682 (56%), Gaps = 52/682 (7%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEISEE 67 L +P++ +G G K + +K+ + DLL Y P + D ++ K I E+ + Sbjct: 8 LDSPIADLKGFGPKSAEKFTKL------DLHTVGDLLLYFPFRYED--FKSKSIFELMDG 59 Query: 68 RIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYR-----KTEMLKNVFFEG 120 ITG + ++ Q KR + G I + FF + K EM G Sbjct: 60 EKAVITGTVVTPANVQYYGFKRNRLSFKIKQGEAVIAISFFNQPYLVDKIEM-------G 112 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 ++ + GK + K+ + + + +D P VY + G+S K I A Sbjct: 113 AEVAIFGKWDQKKSAVTGMK---VLAQVEDDMQP----VYHVAQGVSQAQLIKAIKAAFD 165 Query: 181 R--LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L +L E + + L+ K EA +H P KD A R ++EL Q+ Sbjct: 166 SGALNLLEESLPQVLMDKYRLMGRQEAVRAMHFP---KDLAEYKQALRRTKFEELFYFQM 222 Query: 239 ALLLMRKQFKKEI-GIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 L +++ + K E G+ I E KI KI +PF T++Q+ ++ +IL DM M R Sbjct: 223 NLQVLKAENKSETNGLAIAYDEAKIKAKIAE-LPFPLTEAQQRSLSEILADMKSGAHMNR 281 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 +LQGDVGSGKT++A +AM A AG Q+ +M P ILA+QHY+ ++ +++ ++T Sbjct: 282 LLQGDVGSGKTVIASLAMYGAYTAGLQSALMVPTEILAEQHYQSLQGLFPELEVV--LLT 339 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 M A ++ AL +I G+A +I+GTH+L QD++ Y++L LVI DEQHRFGV QR + Sbjct: 340 SGMKAADKKVALSKIESGEAQMIVGTHSLIQDAVTYHRLGLVITDEQHRFGVNQRRIFRE 399 Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 K P VL+MTATPIPRTL +T+ G++D+S I + PAGRKPI T + ++D + +K Sbjct: 400 KGDNPDVLMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKPIITRWVKHEQLDTALTWIK 459 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT------SSIAIIHGRMSDIDK 530 L + + Y+I P IEE + + ++ V +LH+ T +++A++HGRM + +K Sbjct: 460 GELEKDAQVYFISPLIEESEALDLKNAV----ALHQELTDFLGDSATVALMHGRMKNDEK 515 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 + +M FK+ ++L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S Sbjct: 516 DQIMQDFKDKKSQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGHKQS 575 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 C+L+ +P + R+ + T DGF++AEEDLK R GEI G +QSG+P+F +A Sbjct: 576 YCVLVANPK-NDTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIV 634 Query: 651 LHDSLLEIARKDAKHILTQDPD 672 ++LE AR+ A I++ DP+ Sbjct: 635 EDYNILEEARRVASQIVS-DPN 655 >gi|325678863|ref|ZP_08158461.1| ATP-dependent DNA helicase RecG [Ruminococcus albus 8] gi|324109367|gb|EGC03585.1| ATP-dependent DNA helicase RecG [Ruminococcus albus 8] Length = 678 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 241/694 (34%), Positives = 375/694 (54%), Gaps = 35/694 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L P+ GVG K S N DLL++ P +ID + I + Sbjct: 5 LAKPVMYLSGVGPKKSELYE------NMGVKTVYDLLYHFPRYYIDLNSPQTIRDAPLNE 58 Query: 69 IVTITGYISQHSSFQLQKR--RPYKILLNDGTGEITLL-----FFYRKTEMLKNVFFEGR 121 V + G + + +R YK + D T ++T++ + ++ E+ + F G+ Sbjct: 59 TVVLKGRVVRKLPEAPIRRGLSVYKAVFTDDTADLTIVIYNAGYLFKSLEVEREYFLVGK 118 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 +TG + + + ++P + P ++ VY L G++ +L ++ + AL+ Sbjct: 119 ---LTGNLIRREINSPQIYP-------AEGTDP-VQPVYRLTEGITQNLLRQNVHAALTS 167 Query: 182 LPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 L + E + ++L++ S+ A IH P E A++RL +DELL + + Sbjct: 168 LGAQIYEPVPAEILRENELCSLGFAMQNIHFPTDMHTLEM---AKDRLVFDELLTLALGM 224 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L+M+ + ++ G + G+ + +PF T Q++AI D + DM + M R++QG Sbjct: 225 LMMKSRCREHAGCVMT--GESIDEYYSGLPFELTDGQKNAINDCIADMQKNFPMNRLIQG 282 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT VA A A + G Q +MAP ILA QHYE + + + + V ++TG+M Sbjct: 283 DVGSGKTAVAAGAAFFAYKNGCQTALMAPTEILAAQHYETLCGFLEPLGVKVVLLTGSMT 342 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 + K IA G+ +++GTHAL Q S + KL LVI DEQHRFGV QR L K Sbjct: 343 AKKKEKVKAGIAAGEYSVVVGTHALVQASTTFKKLGLVITDEQHRFGVGQRAMLAGKGDN 402 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 PH L+M+ATPIPRTL L GD+DIS + E P GR+P++T + + +K L Sbjct: 403 PHKLVMSATPIPRTLALMIYGDLDISVLKELPKGRQPVETYAVTGKLRERAFGYVKQHLD 462 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFK 538 EG++ Y +CP IEE ++ + V +L E F + ++HGR++ KE VM FK Sbjct: 463 EGRQGYIVCPMIEESA-ADLQDVKSYAKNLSEGFFKDYRVGLLHGRLAPDKKEKVMKQFK 521 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 LL++TTV+EVG+DV +A+I++IENA+ FGL+QLHQLRGRVGRG+ SSCIL+ Sbjct: 522 EHELDLLVSTTVVEVGVDVPNAAIMVIENADRFGLSQLHQLRGRVGRGQFKSSCILITDN 581 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 P ++ RL +L + DGF I++EDLK R G+ G +Q G+PK IA + +L Sbjct: 582 P-TEEVVQRLKILSKSHDGFEISQEDLKLRGPGDFFGSRQHGLPKMKIADMSQNMDVLVK 640 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILL-YLYQYN 691 A+ AK IL +DP L + + ++ L+ +L++ N Sbjct: 641 AQAAAKVILDKDPQLDTPQNSGLKELVEHLFEQN 674 >gi|149370699|ref|ZP_01890388.1| ATP-dependent DNA helicase [unidentified eubacterium SCB49] gi|149356250|gb|EDM44807.1| ATP-dependent DNA helicase [unidentified eubacterium SCB49] Length = 701 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 253/712 (35%), Positives = 386/712 (54%), Gaps = 40/712 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L P+ +GVG + L + F DLL P+ ++DR KI E+ Sbjct: 6 LQTPIEYLKGVGPNRANLLRTELGIHT-----FQDLLNLFPNRYLDRTKFYKIQELQRNN 60 Query: 69 I-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 V I G I+ + ++ + D TG + L++F R + +K+ + + G Sbjct: 61 ADVQIIGKITHIKMVEQKRGKRLVATFRDETGVMELIWF-RGQKWIKDNLKINQPYVIFG 119 Query: 128 KIKKLKNRIIMVHPHY--------IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA- 178 K K M HP +S +P E + + +G++ + K++ + Sbjct: 120 KTKWFNGSFSMPHPELELVKEHKNKLRSSMQPIYPSTEKLTN--SGITNKVINKLMEQVF 177 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L E + K ++ + S +EA IH P E + A RL ++EL Q+ Sbjct: 178 LDAKNAFTETLSKPIINELKLLSKSEAIFNIHFPENG---ERLARAEYRLKFEELFYIQL 234 Query: 239 ALLLMRKQFKKEI-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLR 296 L+ K +I G P V G + + +PF T +Q+ +K+I QD+ +M R Sbjct: 235 QLIRKNLIHKSKIKGYPFPVVGDNFKNFYNHHLPFQLTGAQKRVVKEIRQDLGSNAQMNR 294 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 +LQGDVGSGKT+VAL++M A++ G QA +MAP IL+ QHY + + + +I + ++T Sbjct: 295 LLQGDVGSGKTIVALLSMLIALDNGFQACLMAPTAILSVQHYNGLVELCKGLEISISLLT 354 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G+ + R+ E + +G +I+IGTHAL +D +++ L L I+DEQHRFGV QR KL Sbjct: 355 GSSTTSQRKVIHENLENGSLNILIGTHALLEDKVKFKNLGLAIIDEQHRFGVAQRSKLWH 414 Query: 417 KAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 K PHVL+MTATPIPRTL ++ GD+DIS I E P GRK IKTV +R D RL Sbjct: 415 KNELPPHVLVMTATPIPRTLAMSVYGDLDISIIDELPPGRKEIKTV----HRFDS--NRL 468 Query: 476 KVV------LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMS 526 KV ++ G++ Y + P I+E + +++ +++ + S+ F I+I+HG+M Sbjct: 469 KVFRFIRDEIALGRQVYIVYPLIQESEALDYKDLMDGYESIVRDFPQPKYQISIVHGQMK 528 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 DKE M+ F G ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRVGRG Sbjct: 529 PADKEFEMNRFLKGETQIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVGRG 588 Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646 E S IL+ LS ++ TRL+ + +T DGF IAE DLK R G+I+G +QSG+ I Sbjct: 589 AEQSYTILMTSHKLSADAKTRLATMTSTSDGFEIAEVDLKLRGPGDIMGTQQSGVLNLRI 648 Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR-ILLYLYQYNEAFQFI 697 A +L+IAR A +L DP LT+ +I+ L +Y + +I Sbjct: 649 ADIVKDSEILKIARSYAFQVLKADPGLTNTENLNIKNTFAQLVKYKNIWNYI 700 >gi|121592808|ref|YP_984704.1| ATP-dependent DNA helicase RecG [Acidovorax sp. JS42] gi|120604888|gb|ABM40628.1| ATP-dependent DNA helicase RecG [Acidovorax sp. JS42] Length = 723 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 234/678 (34%), Positives = 356/678 (52%), Gaps = 47/678 (6%) Query: 40 RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99 R IDL + P + D I + V I ++ S Q++ RR + + DGTG Sbjct: 33 RDIDLALHLPLRYEDETRITPIRSARDGDTVQIEATVTA-SEVQMRPRRQLVVTVEDGTG 91 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159 L FF K + G ++ V G+IK M+HP F ++ + V Sbjct: 92 SCELRFFSFYPSHQKTMAV-GARLRVRGEIKGGFWGRQMLHP--AFRKAEGDLPAALTPV 148 Query: 160 YSLPTGLSVDLFKKIIVEALSRL------------PVLPEWIEKDLLQKKSFP-SIAEAF 206 Y L ++ + AL+R+ P +P W+ + P S+ E+ Sbjct: 149 YPTVAQLPQAYLRRAVASALTRVELPETLPPGLEPPAVPSWVRGNGQNGLQRPWSLRESL 208 Query: 207 NIIHNPRK----AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA 262 +H+P A + + PA +RL +ELLA Q++ L +++ + + + + Sbjct: 209 LFLHHPTPDVALATLQDHSHPAWQRLKAEELLAQQLSQLTAKRERARLRAPALRPQAQAG 268 Query: 263 -----QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317 +++L +PFS T +Q ++I +D+++ M R+LQGDVGSGKT+VA +A Sbjct: 269 STPLHEQLLGVLPFSLTAAQRRVGEEIARDLARPVPMHRLLQGDVGSGKTVVAALAATVC 328 Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII----VEIITGNMPQAHRRKALERIAH 373 ++AG Q +MAP ILA+QH+ + + Q V + G + R + L RI Sbjct: 329 MDAGWQCALMAPTEILAEQHFAKLIGWLQPLLAARGRQVAWLVGGQKKKERAEMLARIES 388 Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK----ATAPHVLLMTAT 429 G+A +++GTHA+ Q+ +++ L L ++DEQHRFGV QRL L +K PH+L+M+AT Sbjct: 389 GEAALVVGTHAVIQEQVRFKNLALAVIDEQHRFGVAQRLALRKKLQHAGMEPHLLMMSAT 448 Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489 PIPRTL ++ D+D+S I E P GR PI T +I +R DEV+ER+ ++ G++ YW+C Sbjct: 449 PIPRTLAMSYYADLDVSTIDELPPGRTPIVTKLIADSRKDEVVERIGAQVAAGRQVYWVC 508 Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIA---------IIHGRMSDIDKESVMDSFKNG 540 P IEE + + + L E A ++H RM +K++VMD FK G Sbjct: 509 PLIEESEALDLSNATATHAELSEALQGDAAPGRAPVMVGLLHSRMPAAEKKAVMDLFKGG 568 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP- 599 +L++TTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG S+C+LLY Sbjct: 569 QMGVLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYSTGD 628 Query: 600 ---LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 L + + RL + T DGF IA DL+ R GE LG +QSG A LL Sbjct: 629 SGRLGETARDRLKAMAETTDGFEIARRDLEIRGPGEFLGARQSGDALLRFADLATDTLLL 688 Query: 657 EIARKDAKHILTQDPDLT 674 E AR+ A +L + P L Sbjct: 689 EWARETAPQMLDRHPLLA 706 >gi|312869882|ref|ZP_07730021.1| ATP-dependent DNA helicase RecG [Lactobacillus oris PB013-T2-3] gi|311094467|gb|EFQ52772.1| ATP-dependent DNA helicase RecG [Lactobacillus oris PB013-T2-3] Length = 678 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 233/677 (34%), Positives = 363/677 (53%), Gaps = 42/677 (6%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFID---------- 54 + L P+ +GVG K + L+ + I+ DLL Y+P+ + D Sbjct: 1 MKSLQDPVVALKGVGPKRAADLATLGIDT-------VEDLLTYYPNRYDDVTPADLENVQ 53 Query: 55 -RHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEML 113 R + E +++ GY SF+LQ + ++ F+ + + Sbjct: 54 DRQRITTQGTVVSEPLLSHFGYRRSRLSFRLQV-----------GPRVIMVTFFNQAYLA 102 Query: 114 KNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKK 173 K V G+ +TV GK + ++ F ++ D AVYS+ + + Sbjct: 103 KRVAL-GQTVTVMGKWDAQRAQVTANK----FLSAGDQEQADSGAVYSVNKHIRQATLRG 157 Query: 174 IIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232 +I +A V+P + L Q +H P ++ AR AY+E Sbjct: 158 LIKQAFDEYQNVIPTLLPASLRQHYRLLDRRTMIKALHFP---ENVGQAKAARRTAAYEE 214 Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292 Q+ L +R+ + G I ++ + I F T +Q+ + +I +D+ + Sbjct: 215 FFLFQLRLQAIRQARRHADGDRILYRNDELKEFIAGIGFELTDAQKRVVNEICRDLREPY 274 Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352 +M R+LQGDVGSGKT+VA IA+ A + AG QA +MAP ILA QH E + + T + V Sbjct: 275 QMNRLLQGDVGSGKTIVAAIAIYATITAGYQAALMAPTEILAAQHAEKLSRVFAGTHVHV 334 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 ++TG++ R+ I G+ ++IIGTHAL QD ++Y L LVI DEQHRFGV QR Sbjct: 335 GLLTGSLTAKQHRELTGAIKRGEINLIIGTHALIQDDVEYANLGLVITDEQHRFGVNQRQ 394 Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 L +K P VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +++ E + Sbjct: 395 LLREKGAHPDVLAMTATPIPRTLAITTYGEMDVSVIDELPAGRKAIETRWLKVDQQSEAL 454 Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDK 530 L+ L+ G +AY + P IEE + + ++ + +N L E+F + ++HGRMS +K Sbjct: 455 HFLRDQLATGAQAYIVSPLIEESEALDVQNATDLYNELAEYFQPHYQVGLLHGRMSAEEK 514 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 E M F+ G +LL++TTVIEVG+D +A++++I NA+ FGLAQLHQLRGRVGRG+ S Sbjct: 515 EQAMHKFQRGEYQLLVSTTVIEVGVDNPNATVMLIYNADRFGLAQLHQLRGRVGRGDRQS 574 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 C+LL P + + R+ + T DGF++A+ D++ R G++LG KQSGMP+F + P Sbjct: 575 YCLLLADPK-TDDGKQRMKTMVETNDGFVVAQRDMELRGSGDVLGSKQSGMPEFKVGDPV 633 Query: 651 LHDSLLEIARKDAKHIL 667 +L++AR+DA +L Sbjct: 634 GDLKMLQVARQDAADLL 650 >gi|256847363|ref|ZP_05552809.1| ATP-dependent DNA helicase RecG [Lactobacillus coleohominis 101-4-CHN] gi|256716027|gb|EEU31002.1| ATP-dependent DNA helicase RecG [Lactobacillus coleohominis 101-4-CHN] Length = 676 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 236/671 (35%), Positives = 372/671 (55%), Gaps = 30/671 (4%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 + L P+ST RGVG K + L+ + DLL Y PS + D + P E + Sbjct: 1 MKSLQDPVSTIRGVGPKTAEALTTL------GIQTVEDLLTYFPSRYDD--FAPTDLETA 52 Query: 66 EERI-VTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 +++ VTI G I S F ++ R +++++ G + Y LK Sbjct: 53 KDKQKVTIHGTIVSEPVMSRFGYRRTRLGFRVMV----GHAVVQVVYFNQPYLKKQAVMD 108 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 + +T+ G + I + N QD + A+Y + +K+I A Sbjct: 109 QDVTIMGTWNASRQEI---QGTKLLTNQQDQE---MGAIYPANKHVHQATLRKLIKIAYH 162 Query: 181 RLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 V+ + L Q+ + + +IH+ KD AR AY+E Q+ Sbjct: 163 NYANVIATLLPISLRQRYQ---LLDRRTMIHDMHFPKDGSAARAARRTAAYEEFFLFQLR 219 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L +R+ +++ G I + + ++ IPF T +Q+ + +I +D+ Q +M R+LQ Sbjct: 220 LQSIRRANRQKDGNQILYNNQELRDFIKTIPFELTGAQKRVVNEICRDLRQPYQMNRLLQ 279 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT+VA IA+ A V AG QA +MAP ILA QH + + K T + + ++TG+M Sbjct: 280 GDVGSGKTIVAAIAINAVVIAGYQAALMAPTEILAAQHAQKLAKVFVGTHVNIGLLTGSM 339 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +R+ L+ I G ++IIGTHAL Q+ + Y L L I+DEQHRFGV QR +L K Sbjct: 340 NTRQKRQMLKGIKDGSINLIIGTHALIQEQVDYANLGLAIIDEQHRFGVNQRQQLRMKGV 399 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 P VL MTATPIPRTL +TS G++D+S I E PAGR+PIKT + N+ D+ ++ LK L Sbjct: 400 HPDVLAMTATPIPRTLAITSYGEMDVSIIDELPAGRQPIKTTWLKSNQADQALQFLKGQL 459 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSF 537 ++G + Y + P IE+ + + ++ + + E+F + ++HGRM + KE VM F Sbjct: 460 AQGAQVYVVSPLIEQSETLDVQNATDLYQEFVEYFAPQYQVGLLHGRMDNEQKEQVMQDF 519 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 ++ ++++ATTVIEVG+D +A++++I +A+ FGLAQLHQLRGRVGRG++ S C+L+ Sbjct: 520 QDNKIQVMVATTVIEVGVDNPNATVMLIYDADRFGLAQLHQLRGRVGRGQQQSYCLLIAD 579 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 P +++ R+ + T DGF++A+ DL+ R G++LG KQSG+P F + P +L+ Sbjct: 580 PK-TEDGVKRMQTMVETNDGFVVAQRDLELRGSGDVLGNKQSGVPDFKVGDPVADLKMLQ 638 Query: 658 IARKDAKHILT 668 IAR DA +++ Sbjct: 639 IARSDAANLIN 649 >gi|291563511|emb|CBL42327.1| ATP-dependent DNA helicase RecG [butyrate-producing bacterium SS3/4] Length = 684 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 232/669 (34%), Positives = 375/669 (56%), Gaps = 30/669 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFID-LLFYHPSSFIDRHYRPK-ISEISEERIV 70 + T +G+G+K + K+ R ID LL Y+P + D + PK I E+SE+ Sbjct: 7 IETLKGIGEKTAKLFEKV-------GIRTIDDLLHYYPRGY-DTYGEPKAIGELSEDETG 58 Query: 71 TITGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 T+ G++ S + + + ++D TG++ L++++ LKN G++ Sbjct: 59 TVEGFLKSGATGVHVNGLSIVQATISDMTGKLRLVWYH--MPYLKNTLRPDSHFIFRGRV 116 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + KN + M P + + + VY+ GL + + +AL+ + +++ Sbjct: 117 IRKKNGLTMEQPQMFKPEAYEELLSSMRPVYAQTKGLGNKMITSAVEQALAFRTLERDYL 176 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR--KQF 247 L A IH P ++ ++ AR+RL YDE LL +R K+ Sbjct: 177 PAGLRIANELAEYNFAIEHIHFPSNEEELKF---ARKRLVYDEFF---FFLLAVRHLKEK 230 Query: 248 KKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 ++ + P ++E + +K+L ++P+ T +Q ++++L+D+ + M R++QGDVGSGK Sbjct: 231 RQNVQSPFHMEKQDECRKLLADLPYRLTNAQLRTLEEVLRDLKSGSVMNRLIQGDVGSGK 290 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI----KKYTQNTQIIVEIITGNMPQA 362 T++A++A+ AA E G Q +M P +LA+QH+E + +K+ + ++I ++TG+M Sbjct: 291 TIIAVLALLAACENGYQGALMVPTEVLARQHFESVTELFEKHGVDKKVI--LLTGSMTAK 348 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 +R A E++A +A IIIGTHAL Q+ I Y L LVI DEQHRFGV QR K PH Sbjct: 349 EKRIAYEKVASHEADIIIGTHALIQEKIVYDNLALVITDEQHRFGVAQREMFGNKGQMPH 408 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 VL+M+ATPIPRTL + GD+DIS I E PA R PIK ++ + ++ + G Sbjct: 409 VLVMSATPIPRTLAIILYGDLDISVIDELPANRLPIKNCVVDKSYRPRAYRFIENEVKNG 468 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541 ++AY ICP +EE + + +V++ L ++ + +HG+M +K +M+ F G Sbjct: 469 RQAYVICPMVEESEMIDAENVLDYTKILRQNLPGIRVEYLHGKMKGKEKNKIMEEFAAGE 528 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG++ S CI++ + + Sbjct: 529 IQVLVSTTVIEVGVNVPNATVMMIENAERFGLAQLHQLRGRVGRGDKQSYCIMV-NASGN 587 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 K RL VL + DGF IA EDLK R G+I GI+QSG +F +A L+ + Sbjct: 588 KEKNRRLDVLNKSNDGFYIASEDLKLRGPGDIFGIRQSGDLEFQLADIYTDAVTLKKVSE 647 Query: 662 DAKHILTQD 670 D +L QD Sbjct: 648 DVNRLLEQD 656 >gi|89902448|ref|YP_524919.1| ATP-dependent DNA helicase RecG [Rhodoferax ferrireducens T118] gi|89347185|gb|ABD71388.1| ATP-dependent DNA helicase RecG [Rhodoferax ferrireducens T118] Length = 747 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 245/750 (32%), Positives = 368/750 (49%), Gaps = 109/750 (14%) Query: 3 PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62 P PL P R +G + R IDL + P + D ++S Sbjct: 12 PQLPKPLTGPQKALRKLGLE-----------------RAIDLALHLPLRYEDETRIERLS 54 Query: 63 EISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122 E+ E + + G ++ H +L R + L+DGT + LL F+ + G + Sbjct: 55 EVREGEVAQVEGVVT-HCEVKLSGHRQLLVTLDDGT-DTCLLRFFTFYPSSQKALAVGNR 112 Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPTG----------LSVDL 170 I V G++K + M+HP + + P+ V LP +L Sbjct: 113 IRVRGEVKGGFGGLTMMHPAFKSAGGELAVALTPIYPTVAGLPQAYLRRAVQGGVARAEL 172 Query: 171 FKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK----AKDFEWTSPARE 226 + +E L + + P W ++ A +HNP A + + PA + Sbjct: 173 SDTVPLENLCEIGLQPSW------------NMRNALLFLHNPTPEVALATLQDHSHPAWQ 220 Query: 227 RLAYDELLAGQIALLLMRKQ------------------------FKKEIGIPINVEGKIA 262 RL +ELLA Q++ L +++ +++ + + G + Sbjct: 221 RLKAEELLAQQLSQLQAKRERARLRAPVLHSQALDDLVDDAHAAGRRDARLKPGLPGSLR 280 Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 ++L +PF T +Q +I +D+++ M R+LQGDVGSGKT+VA +A A ++AG Sbjct: 281 NRLLATLPFQLTAAQHRVSAEIARDLARPVPMHRLLQGDVGSGKTVVAALAAAICIDAGW 340 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q +MAP ILA QH+ + + + I V +TG+ RR+ L IA G+A ++IGT Sbjct: 341 QCALMAPTEILATQHFAKLVSWLEPLGIRVAWLTGSQKAKERREMLALIASGEAGLVIGT 400 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------------------- 420 HA+ QD +Q+ L L I+DEQHRFGV QRL L K +A Sbjct: 401 HAVIQDKVQFKNLALAIIDEQHRFGVAQRLALRSKLSAQTDHPELVEGPAAASSLRQAQD 460 Query: 421 -----------PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469 PH+L+MTATPIPRTL ++ D+D+S I E P GR PI T ++ R + Sbjct: 461 QPSSVRTVGLEPHLLMMTATPIPRTLAMSYYADLDVSTIDELPPGRTPIITKVVNDARRE 520 Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDI 528 EVI R++ L G++ YW+CP IEE + + + E L + + ++H RM Sbjct: 521 EVIARIRAQLDAGRQIYWVCPLIEESEALDLSNATETHAQLSAALPGAMVGLLHSRMPVA 580 Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588 +K++VM F +G LL++TTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG Sbjct: 581 EKKAVMSLFTSGRMGLLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAA 640 Query: 589 ISSCILLYH----PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644 S+C+LLY P LS+ + RL + T DGF IA DL+ R GE LG +QSG Sbjct: 641 ASACVLLYSTGDAPRLSETARARLKAMAETHDGFEIARRDLEIRGPGEFLGARQSGAAML 700 Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPDLT 674 A +LL+ AR+ A +L Q P L Sbjct: 701 RFADLATDTALLQWARQLAPVMLDQHPALA 730 >gi|217961275|ref|YP_002339843.1| ATP-dependent DNA helicase RecG [Bacillus cereus AH187] gi|229140501|ref|ZP_04269056.1| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-ST26] gi|217065342|gb|ACJ79592.1| ATP-dependent DNA helicase RecG [Bacillus cereus AH187] gi|228643062|gb|EEK99338.1| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-ST26] Length = 682 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 231/663 (34%), Positives = 377/663 (56%), Gaps = 33/663 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G + S L ++ ++ LL + P + D + ++E+ + VT Sbjct: 8 PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G + Q ++ ++ + G IT + F R K +T+TGK Sbjct: 61 VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRP--YYKQKLNLDETVTITGKW 118 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184 + + I + H+ V +E VYS+ L+V ++ I +AL S + V Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LP+ + L + K P EA +H P +D + AR R Y+E Q+ + +R Sbjct: 175 LPDGL---LSRYKLLPRY-EALRALHFPTGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227 Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 K + + G + + QK + +PF T +Q + +I++DM+ RM R+LQGDVG Sbjct: 228 KMERENSKGTKKEIPSEELQKFIDALPFPLTGAQRRVVDEIMKDMTSPYRMNRLLQGDVG 287 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA I + AA A Q +M P ILA+QHY+ + + + + VE++T ++ Sbjct: 288 SGKTVVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGVR 347 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L ++ G+ I++GTHAL QD + +++L LVI DEQHRFGV QR L +K +P V Sbjct: 348 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D V+ ++ + +G+ Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541 +AY ICP IEE ++ + ++ ++ + L H+ + ++HGR+S +KE +M F Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+ P S Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660 + R+ ++ T DGF+++E+DL+ R G+ G KQSG+P+F +A +HD LE AR Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645 Query: 661 KDA 663 +DA Sbjct: 646 QDA 648 >gi|303241725|ref|ZP_07328222.1| ATP-dependent DNA helicase RecG [Acetivibrio cellulolyticus CD2] gi|302590726|gb|EFL60477.1| ATP-dependent DNA helicase RecG [Acetivibrio cellulolyticus CD2] Length = 691 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 242/643 (37%), Positives = 366/643 (56%), Gaps = 24/643 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99 D++ Y P + DR KI+E+ + G I+ S Q + R+ YK+L+ D TG Sbjct: 35 DIITYFPRDYEDRSRLKKINELIDGESCAFEGIIASKVS-QHRFRKGLTLYKVLIKDETG 93 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN-SQDVNFPLIEA 158 IT +F + + V G + G+I + + P Y H+ + N I Sbjct: 94 AITASWFNQ--HYIGKVLRIGERFIFFGRISGRYKNLEVQSPVYEKHDIGEARNVLKIVP 151 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 VY L+ + + I AL + L +++ K +L + I + IH P+ +D Sbjct: 152 VYPSTADLTQNTIRATISSALEMVGGKLEDFLPKSILSEHQLSEINYSIQQIHFPKSDED 211 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKS 276 F+ AR RL ++EL Q+ LL ++K F+K+ GI ++ ++ +PF T + Sbjct: 212 FK---NARYRLVFEELFLLQLCLLSVKKSFEKDKKGIEFKNVPEM-DDFIKMLPFKLTNA 267 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q+ ++I +DM N M R++QGDVGSGKT+VA++A+ A+ G Q +M P ILA+Q Sbjct: 268 QKKVFEEIEKDMESNNVMNRLVQGDVGSGKTIVAVLALFKAIRNGYQGALMVPTEILAEQ 327 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 HY+ I + I ++TG+ + + K LE I G+ I+IGTHAL +D+I++ L Sbjct: 328 HYKSISELMGRYDINTALLTGSQTKKQKTKILEEIKSGEVQIVIGTHALIEDNIEFKNLG 387 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 LVI DEQHRFGV+QR L++K P ++MTATPIPRTL L GD+DIS I E P GRK Sbjct: 388 LVITDEQHRFGVRQRSLLSKKGEDPDAIVMTATPIPRTLALILYGDLDISIIDELPPGRK 447 Query: 457 PIKTVIIPINRIDEVIERLKVVL----SEGKKAYWICPQIEEKKESNFRSVVERFNSL-H 511 P+KT P++ D + ER+ + +G++ Y +CP +EE +E N +S V+ + Sbjct: 448 PVKTY--PVD--DGMRERINNFIIKEVRQGRQVYIVCPLVEESEEINAKSAVQHAEKIAK 503 Query: 512 EHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 + F + +I+G+M DKE VM SF G +L++TTVIEVG++V +ASI++IENAE Sbjct: 504 DDFKDLRVGLIYGKMKAKDKEEVMRSFVGGEIDILVSTTVIEVGVNVPNASIMVIENAER 563 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630 FGLAQLHQLRGRVGRGE S CI LY ++ R+ +++ T DGF+I+E+DL R Sbjct: 564 FGLAQLHQLRGRVGRGEYQSHCI-LYSEGKTEVCRERMKIMQKTNDGFIISEKDLDLRGP 622 Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 GE G +Q G+P+ IA +L+ A++ A ++ D DL Sbjct: 623 GEFFGTRQHGIPELKIANLYEDIDILKKAQEAAITLINDDKDL 665 >gi|116626790|ref|YP_828946.1| ATP-dependent DNA helicase RecG [Candidatus Solibacter usitatus Ellin6076] gi|116229952|gb|ABJ88661.1| ATP-dependent DNA helicase RecG [Candidatus Solibacter usitatus Ellin6076] Length = 699 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 228/651 (35%), Positives = 358/651 (54%), Gaps = 18/651 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS--QHSSFQLQKRRPYKILLNDGTGE 100 DLL Y P + DR + +++ + T+ + + S F+ + ++ D + Sbjct: 31 DLLGYVPFRYEDRSNMKPVGQLAPGEMATVIAEVRSVKMSGFKRRSLGMFEARFTDASRA 90 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIK--KLKNRIIMVHPHYIFHNSQD------VN 152 I + ++ L NVF EG K+ + GK++ + M+HP + + D ++ Sbjct: 91 ILVGKWFHGG-YLANVFAEGMKVALFGKVEFDSYAGELTMLHPEFEILSGDDDEGEAALH 149 Query: 153 FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 + +Y L+ +F+ +I L + L + + + L + P A IH P Sbjct: 150 VGRVVPIYEGAGKLTTKIFRTLIHRILGTIEPLDDALPQFLKDRLKMPDRWRAVQDIHFP 209 Query: 213 RKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268 D + SPA+ RL ++E + + L R + + GI + ++ ++I Sbjct: 210 PPDSDLRLLNAFRSPAQFRLIFEEFFWLECGVALKRSKARMMPGIAFELNERVREQIKAM 269 Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 +PF PT +Q+ +K+I DM+ + M R+LQGDVGSGKT+VA A A+E G Q ++A Sbjct: 270 LPFKPTGAQKRVLKEIAGDMAAAHPMNRLLQGDVGSGKTIVAAEAAVIAIENGYQVAVLA 329 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P ILA QH K+ + ++TG+ + + + +A G + IGTHAL Q+ Sbjct: 330 PTEILAAQHSFTFKRIFEKLGYPTMLLTGSFSAREKSQMKKLLAEGLVKVAIGTHALIQE 389 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 +++ KL L I+DEQHRFGV QRL L +K P +L+MTATPIPRTL +T GD+D+S I Sbjct: 390 DVEFKKLGLAIIDEQHRFGVLQRLGLAKKGATPDILVMTATPIPRTLAMTLYGDLDVSII 449 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 E P GRKPI T +RI++V+ +K + EG++AY + P IEE + ++ + + Sbjct: 450 DEMPPGRKPIVTKHSTSDRIEQVLSFVKKQIDEGRQAYVVYPVIEESETQAMKAAQKEYE 509 Query: 509 SLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 L + IA+ +HGR+ +KE+VM FK+G K+L++TTVIEVG+DV +AS++++E Sbjct: 510 HLSKEVFPDIAVGLMHGRLGADEKEAVMQRFKDGLIKILVSTTVIEVGVDVPNASVMVVE 569 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626 AE FGL+QLHQLRGRVGRG E S CIL+ ++ + R+ L + DGF I+E DLK Sbjct: 570 QAERFGLSQLHQLRGRVGRGAEQSYCILVTE-KMNDTARERIRTLVESTDGFYISEMDLK 628 Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677 R GE G KQSG+P +A +LEIAR++A + + P +R Sbjct: 629 LRGPGEFFGTKQSGLPSLRVANILRDAEILEIARREAIDFIARPPSEEDLR 679 >gi|300811693|ref|ZP_07092168.1| ATP-dependent DNA helicase RecG [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497320|gb|EFK32367.1| ATP-dependent DNA helicase RecG [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 679 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 229/673 (34%), Positives = 369/673 (54%), Gaps = 26/673 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 +F P++ +GVG K + L + DLLFY P + + P + ++ + + Sbjct: 7 IFRPVTALKGVGAKTAEALQSL------GIYSIYDLLFYFPYRYDELENLP-LDQLEDGQ 59 Query: 69 IVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124 V + G ++ + + F K R +K+ ++ +I ++ F+ + + K + G++I Sbjct: 60 KVMLKGIVATNPYQNYFGYHKSRVSFKLRIDH---DIIMVNFFNQPWLTKQLSV-GQEIA 115 Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LP 183 V GK L+ + + + NS D P +YS+ + + +I A++ + Sbjct: 116 VYGKYD-LRKQSLSAYKLLANKNSDDGMAP----IYSVNRQIKQKKLQTMIDLAIAESMD 170 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 + + +DL + + + +H+P KD AR + E Q+ L LM Sbjct: 171 EMGNAVPEDLRKHYRLMADQDLVIAMHHP---KDLTEAKEARRSAVFREFFLFQMQLALM 227 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 Q K G + + + K+ +++PF+ + Q+ I +I DM +M R+LQGDVG Sbjct: 228 SSQNKSHSGYAKHYDLEEIGKLTKSLPFALSPDQKKVINEIFADMFVDQQMQRLLQGDVG 287 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA+ A+ AV AG QA +M P ILA QHY I ++ + V ++TG+ Sbjct: 288 SGKTVVAVFAIYGAVTAGYQAALMVPTEILANQHYHKISAMLEDFGVRVALLTGSTKTME 347 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ + +A G +++IGTHAL Q+ + + KL LVI+DEQHRFGV QRL L K P + Sbjct: 348 RREIYKELADGSINVVIGTHALIQEQVAFKKLGLVIIDEQHRFGVVQRLALINKGDRPDI 407 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPR+L LT GD +S+I PAGRKPIK+ +++DEV ++ L+EG Sbjct: 408 LAMTATPIPRSLALTVYGDTALSEIRHLPAGRKPIKSYWKTSSQLDEVYSLMRQQLAEGF 467 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTC 542 + Y + P I E + + + + L F + ++HG+M+ DKE +MD F G Sbjct: 468 QIYAVTPLISESETIDLENAEALHDRLAGEFPDQEVVLLHGKMAAADKEQIMDRFAAGEV 527 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 +L+ T+VIEVG+DV +A++++I +A+ FGL+QLHQLRGR+GRG+ S C+ L P ++ Sbjct: 528 DILVTTSVIEVGVDVANANLMVIFDADRFGLSQLHQLRGRIGRGQTQSYCVFLADPK-TE 586 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662 R+ ++ T DGF +AEEDLK R EG++ G QSG+P+F ++ +AR + Sbjct: 587 AGKQRMKIVAETNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRTGSVVSDYQVMVVARDE 646 Query: 663 AKHILTQDPDLTS 675 AK I+ DPDL + Sbjct: 647 AKRIVQADPDLKA 659 >gi|188995477|ref|YP_001929729.1| ATP-dependent DNA helicase RecG [Porphyromonas gingivalis ATCC 33277] gi|188595157|dbj|BAG34132.1| ATP-dependent DNA helicase RecG [Porphyromonas gingivalis ATCC 33277] Length = 698 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 239/681 (35%), Positives = 379/681 (55%), Gaps = 22/681 (3%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI- 64 ++ L ++ GVG K + L + I ++DLL Y P ++DR I EI Sbjct: 1 MDILSTKITYLTGVGPKRAEVLKEEIEVRT-----YLDLLHYFPFRYVDRSRFYAIREIR 55 Query: 65 SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124 S+ + + G + S +R+ +DGTG I L++F + + +++ EGR+ Sbjct: 56 SDMPYIQLRGVLRNFSEVGEGRRKRLTATFSDGTGSIELVWF-KGIKYIRDKLQEGRRYI 114 Query: 125 VTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL- 182 V GK + + HP ++ V L ++ S+ L K + + L L Sbjct: 115 VFGKPVFFASGYNIAHPEIDAEEKAEQVAGGLTPIYHTTERMKSMGLGSKQLQQLLYVLL 174 Query: 183 ----PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L E + +L F S EA IH P+ E AR RL ++EL Q+ Sbjct: 175 NQVSATLTETLPPYILSSYGFVSYQEAIRQIHFPQGVAQLE---AARTRLKFEELFYVQL 231 Query: 239 ALLLMRKQFKKEI-GIPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKNRMLR 296 L+ + + K GI G + + ++PF T +Q+ +++I QD ++M R Sbjct: 232 HLIGSKLERKARFQGIVFAQVGALFNTFYKEHLPFELTGAQKKVVREIRQDTLSGHQMNR 291 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 ++QGDVGSGKTLVAL++M A++ G QA +MAP ILA+QH+ + + + I V ++ Sbjct: 292 LVQGDVGSGKTLVALLSMLLALDNGCQACLMAPTEILARQHHHTLSELLRPLGIEVGLLI 351 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G+ R + L R+A G I++GTHAL + + +++L + ++DEQHRFGVQQR +L + Sbjct: 352 GSCTARQRERLLPRLADGSLSIVVGTHALLEQGVAFHRLGMAVIDEQHRFGVQQRARLWE 411 Query: 417 KA--TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 K T PH+L+M+ATPIPRTL +T GD+DIS I E P GRKPI+T+ N + V Sbjct: 412 KNLDTLPHILIMSATPIPRTLAMTLYGDLDISIIDELPPGRKPIQTLHHFDNDMAPVFRF 471 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESV 533 L+ L+ G++ Y + P IE + ++ +++ + F F + ++HG+M +KE+ Sbjct: 472 LRSQLAAGRQVYVVYPMIEGSETTDLKNLEDGFELFSSIFPDEGVTMVHGKMKAKEKEAR 531 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M F +G ++L+ATTVIEVG++V +A+++++ENA+ FGL+QLHQLRGRVGRG E S CI Sbjct: 532 MADFVSGRSRILLATTVIEVGVNVPNATVMVVENADRFGLSQLHQLRGRVGRGGEQSYCI 591 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELH 652 L+ ++S R+ V+ T DGF IAEED++ R G++ G +QSG L IA P Sbjct: 592 LITGTKTGEDSRRRIQVMVETNDGFEIAEEDMRLRGFGDLEGTRQSGRQISLRIANPARD 651 Query: 653 DSLLEIARKDAKHILTQDPDL 673 L+ ++R A+ +L +DP+L Sbjct: 652 TELIALSRSIAEQLLERDPEL 672 >gi|253583420|ref|ZP_04860618.1| ATP-dependent DNA helicase [Fusobacterium varium ATCC 27725] gi|251833992|gb|EES62555.1| ATP-dependent DNA helicase [Fusobacterium varium ATCC 27725] Length = 686 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 226/605 (37%), Positives = 358/605 (59%), Gaps = 14/605 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEI-SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101 DL +Y P ++ DR KI ++ +E +V ++ + + K D TG I Sbjct: 39 DLFYYFPRAYDDRTNIMKIGDLRGDEYVVLKATLLTVSAPPTRSGLKMVKATATDNTGII 98 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVY 160 L++F + L+ G + G+IK+ +V+P + + N Q + I +Y Sbjct: 99 ELVWF--QMPYLRKTLKIGEEYIFIGQIKR-GYVYQLVNPEFKLGSNQQKLEAGEILPIY 155 Query: 161 SLPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 S + + +K++ EA+ S+L + E I +++L+K + +A IH P +K+ E Sbjct: 156 STSKEMPQNTLRKLMKEAVKSKLYIFQENIPEEILKKYKVMNREQAMKEIHFPTNSKNLE 215 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK--IAQKILRNIPFSPTKSQ 277 A+ R A +ELL ++ +L R + + +E K + ++ L N+ FS TK+Q Sbjct: 216 ---EAKRRFAIEELLVLEMGILQKRFEMDSQNTSKYELEDKKTLVKQYLENLTFSLTKAQ 272 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + I +I +D+S + R++QGDVGSGKT+V+++ + VE Q V+MAP ILA QH Sbjct: 273 KKVITEIYRDLSNGRIINRLIQGDVGSGKTIVSMVLLLYMVENSYQGVLMAPTEILAVQH 332 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y +K + + VE++TG+ ++K L+ I G+ I+IGTHAL ++++++ +L L Sbjct: 333 YLSVKDKFEKLGVRVELLTGSFKGKAKQKLLDSIKEGEVDIVIGTHALIEENVEFERLGL 392 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +I+DEQHRFGV QR L K ++++M+ATPIPR+L L+ GD+D+S I E P GRKP Sbjct: 393 IIIDEQHRFGVVQRKLLRDKGVLANLVVMSATPIPRSLALSIYGDLDVSVIDELPPGRKP 452 Query: 458 IKT-VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 IKT I I+ + E + LS+G++AY++ P IEE ++ +S E + ++ Sbjct: 453 IKTKWIATIDETKTMYEFIGKKLSQGRQAYFVAPLIEESEKLAAKSTEELLEEVSKYLPE 512 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 I ++HGRM + DK+ +M+SFKN ++++TTVIEVG+DV +A++++I NAE FGL+ Sbjct: 513 YRIGVLHGRMKNADKDEIMNSFKNKELDIMVSTTVIEVGVDVPNATVMVINNAERFGLSA 572 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRGE S C L+ + S +RL V++ T+DGF IAEEDLK RK GEI G Sbjct: 573 LHQLRGRVGRGEYQSYCFLVSRTE-NAVSKSRLQVMEETQDGFKIAEEDLKLRKSGEIFG 631 Query: 636 IKQSG 640 KQSG Sbjct: 632 TKQSG 636 >gi|57233949|ref|YP_181980.1| ATP-dependent DNA helicase RecG [Dehalococcoides ethenogenes 195] gi|57224397|gb|AAW39454.1| ATP-dependent DNA helicase RecG [Dehalococcoides ethenogenes 195] Length = 740 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 222/657 (33%), Positives = 361/657 (54%), Gaps = 33/657 (5%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLL+Y P+ +D KIS++ TI + Q + RR + +L D TG + Sbjct: 70 DLLYYFPNRHLDYSRLKKISQLEAGSEQTIIANVWQSKVNYMGGRRSTEAVLGDDTGNMR 129 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVY 160 ++F M++N+ R + ++G++ R + P + + + ++ + VY Sbjct: 130 AVWF-NNPYMVRNLKPNAR-VVLSGRVSIFNGRPVFESPEWEELPDEADLIHTGRLVPVY 187 Query: 161 SLPTGLSVDLFKKIIVEALS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 L GL ++++ + P + +++ +D L++ +AEA H P E Sbjct: 188 PLTAGLHQRSLRRLMKNFIDISTPGISDFLPEDTLKRTRLLPLAEAIRQAHFPDTE---E 244 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 AR RLA+DEL Q+ +L +K+++++ G + + + +PF T +Q Sbjct: 245 LKDAARNRLAFDELFILQLGVLAKKKRWQEQTGRALKINLPAIDHFISQLPFKLTDAQTK 304 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 + DI D+S+ M R+LQG+VGSGKT+VA+I++ A G Q MAP ILA+QH++ Sbjct: 305 CLADIKADISKSVPMSRLLQGEVGSGKTIVAVISLFTAAANGLQGAFMAPTEILAEQHFK 364 Query: 340 FIKK---------------YT----QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380 + + YT + + V ++ +M + + E+I G+ I I Sbjct: 365 SVTRLFASIAKVSTLLDGVYTFEGLLDRPLRVALMISDMKSSQKDILKEKIKKGEIDIAI 424 Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440 GTHAL Q I++ L L ++DEQHRFGV+QR L K PH+L+MTATPIPRTL LT Sbjct: 425 GTHALIQKEIRFKSLGLAVIDEQHRFGVEQRSALRSKGLNPHILIMTATPIPRTLALTLY 484 Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500 G++D+S I E P GR+ IKT + + + ++ + G++A+ ICP +EE + Sbjct: 485 GELDLSVIDELPPGRQSIKTRWLKPEQRNSAYNFIRKQIEAGRQAFIICPLVEESEAIQA 544 Query: 501 RSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 ++ + +L S +A++HGRM+ +KES+M F G +L++T V+EVGID+ Sbjct: 545 KAATAEYETLSSEVFPESKVALLHGRMNAAEKESIMKHFNEGKMDILVSTPVVEVGIDIP 604 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618 +A+++++E+A+ FGL+QLHQ RGRVGRG E S C+ L P S RLS++++T+DGF Sbjct: 605 NATVMLVESADRFGLSQLHQFRGRVGRGTEQSYCMFLAENP-SLLGQERLSIIESTQDGF 663 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLT 674 +AEEDL+ R GE G +QSG+P +A + D LLE AR++A + DP+L Sbjct: 664 KLAEEDLRLRGPGEFFGTRQSGLPDLRMAS--ISDVGLLEQARREATRLFESDPELN 718 >gi|315187033|gb|EFU20790.1| ATP-dependent DNA helicase RecG [Spirochaeta thermophila DSM 6578] Length = 683 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 245/696 (35%), Positives = 372/696 (53%), Gaps = 38/696 (5%) Query: 5 FLNPLFAPLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62 L + AP++T G+G K + K I + G DLL ++P + DR ++ Sbjct: 2 LLEDISAPITTLAGIGGKTARHFHKLGIRSVG--------DLLQHYPRDYEDRSTFTSLA 53 Query: 63 EI------SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNV 116 E + +T+ YI + S+ L +I +NDGT L+ F R L Sbjct: 54 EAHATGKATTVATITLMDYIGKPSNPVL------RIFINDGTELAALVCFGRN--FLSRK 105 Query: 117 FFEGRKITVTGKIK----KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFK 172 F G K+ V+G+ + KL++ ++ P+ F I +Y L + + Sbjct: 106 FSPGMKVFVSGQFEMRYGKLQSTRFIIEPY----TESPKEFGKILPIYPTTEDLPQTILR 161 Query: 173 KIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231 + AL + LP+L + + LL +S P + EA IH P D + + AR RL Y Sbjct: 162 SAVEAALRQYLPLLDDPLPPSLLAARSLPPLPEALAAIHFP---PDRDALTRARTRLIYQ 218 Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 EL Q+ ++ + K ++ P++ + +++ R++PF T QE +++I D + Sbjct: 219 ELFFLQVIVVRAAMKRKTQLQAPVHFPRTLQERLRRSLPFPLTPDQEKVLEEIYADTTSP 278 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351 M R+LQGDVGSGKTLVAL+A +EAG Q M P +LA QH E + Sbjct: 279 RPMARLLQGDVGSGKTLVALLAALPYIEAGHQVAFMVPTELLALQHAETAHTLLSPFGVR 338 Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411 ++ G + A RR L I G+ ++IGTH LF D + Y L L I+DEQH+FGV QR Sbjct: 339 TALLAGTLQPAARRTLLSAILRGEVDLVIGTHTLFSDDVAYRNLRLAIIDEQHKFGVSQR 398 Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471 +L +KA+ P +LLMTATPIPRT+ LT GD+D+S I P GRKP++T + + + ++V Sbjct: 399 ARLLEKASHPDLLLMTATPIPRTMALTLYGDMDMSTIKTMPPGRKPVRTHLAVLGKEEKV 458 Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530 ++ L +G +AY++ P I E ++ R+ L + +A+IH R+ D +K Sbjct: 459 YTWVEKELEKGHQAYFVYPLIGESEKLELRNAESMVEFLRRRYPRWKVALIHSRIPDEEK 518 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 E +M F G ++L+AT+VIEVG++V A+ I+IE+AE FGLA LHQLRGRVGR + S Sbjct: 519 ERIMREFMQGKIRILVATSVIEVGVNVPTATCIVIEHAERFGLATLHQLRGRVGRSDRQS 578 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL-GIKQSGMPKFLIAQP 649 L+Y P L++ + RL +K T DGFLIAE+DL+ R G++L G Q+G + IA Sbjct: 579 YAFLVYSPDLTEEAKARLRTMKETTDGFLIAEKDLEIRGPGDLLDGTIQAGHLRLRIAHL 638 Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685 L+ RKD + +L +DP L IR L+ Sbjct: 639 TRDAPLMHEVRKDVEALLARDPGLLRPEHTLIRTLI 674 >gi|42782947|ref|NP_980194.1| ATP-dependent DNA helicase RecG [Bacillus cereus ATCC 10987] gi|42738874|gb|AAS42802.1| ATP-dependent DNA helicase RecG [Bacillus cereus ATCC 10987] Length = 682 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 231/663 (34%), Positives = 377/663 (56%), Gaps = 33/663 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G + S L ++ ++ LL + P + D + ++E+ + VT Sbjct: 8 PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G + Q ++ ++ + G IT + F R K +TVTGK Sbjct: 61 VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRP--YYKQKLNLDETVTVTGKW 118 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184 + + I + H+ V +E VYS+ L+V ++ I +AL S + V Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LP+ + L + K P EA +H P +D + AR R Y+E Q+ + +R Sbjct: 175 LPDGL---LSRYKLLPRY-EALRALHFPSGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227 Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 K + + G + + Q+ + +PF T +Q + +I++DM+ RM R+LQGDVG Sbjct: 228 KMERENSKGTKKEIPSEELQEFIDALPFPLTGAQSRVVDEIMKDMTSPYRMNRLLQGDVG 287 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA I + AA A Q +M P ILA+QHY+ + + + + VE++T ++ Sbjct: 288 SGKTVVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGVR 347 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L ++ G+ I++GTHAL QD + +++L LVI DEQHRFGV QR L +K +P V Sbjct: 348 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D V+ ++ + +G+ Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541 +AY ICP IEE ++ + ++ ++ + L H+ + ++HGR+S +KE +M F Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+ P S Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660 + R+ ++ T DGF+++E+DL+ R G+ G KQSG+P+F +A +HD LE AR Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645 Query: 661 KDA 663 +DA Sbjct: 646 QDA 648 >gi|295104656|emb|CBL02200.1| ATP-dependent DNA helicase RecG [Faecalibacterium prausnitzii SL3/3] Length = 686 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 234/673 (34%), Positives = 356/673 (52%), Gaps = 30/673 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID--RHYRPKISEISEERI 69 P+ +GVG K + K+ DLL ++P +ID + Y + E + Sbjct: 14 PVRYLKGVGPKTAERFEKL------GIVTLADLLCHYPRRYIDFSKPYSIAEAPADTECV 67 Query: 70 VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF-----YRKTEMLKNVFFEGRKIT 124 V + RR +I D + + +F +K ++ + +F+G Sbjct: 68 VKAEVFAKPGGRILPGGRRMERITAGDDVASLEITWFNNPYATQKLQLGQEYYFQG---I 124 Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184 VTG + + + MV+P ++ + EAVY GL+ + I + L + Sbjct: 125 VTGGMLRRQ----MVNPQ--VRTAEQIQAAPFEAVYPQTEGLTSSAISRCIRQLLPHAEL 178 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LP+ + ++LQK AEA IH P E + AR RL Y+ELL Q+ + MR Sbjct: 179 LPDPLPPEMLQKYRLLPKAEAVRAIHCPATE---EQAAAARRRLIYEELLVLQLGIGRMR 235 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 + G P+ +++PF+PT +Q A+++IL DM+ M R+LQGDVGS Sbjct: 236 SRGAAVTGAPMRRADP--SPFWQSLPFAPTGAQRRAVEEILNDMAGDTAMNRLLQGDVGS 293 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKTLVA A+ A + AG QA ++AP ILA QH E + + + V ++TG M A R Sbjct: 294 GKTLVAAAAIWACIRAGYQAALLAPTEILAAQHAEGLNRLLAPFGMRVALLTGGMKAAAR 353 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424 R L I +A +++GTHAL + +++ +L L ++DEQHRFGV+QR L +KA PH+L Sbjct: 354 RTTLAAIRKDEADLVVGTHALMSEGVEFARLGLAVIDEQHRFGVRQRGALAEKAANPHLL 413 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 +M+ATPIPRTL L GD+DIS + E P GR P+KT I R ++ L + +G++ Sbjct: 414 VMSATPIPRTLGLLIYGDLDISILDELPPGRTPVKTRCITGKRRQDLYRFLDSEIDKGRQ 473 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542 Y +CP IE+ + +V + + + + ++HG++ +K +VM+ FK G Sbjct: 474 VYLVCPAIEDVPDGGLNAVKTYYEDIAKALLPDRRVGLMHGKLKPKEKAAVMEDFKAGRL 533 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 L++TTVIEVG+DV +AS+++IENAE +GL+ LHQLRGRVGRG S C L+ S+ Sbjct: 534 DALVSTTVIEVGVDVPNASVMVIENAERYGLSALHQLRGRVGRGAAESWCFLVSD-NTSE 592 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662 RL L +T DGF +A+ DL+ R G+ G +Q G+P IA L A+ + Sbjct: 593 AVQKRLKFLCSTTDGFAVAQYDLETRGPGDFFGSRQHGLPTLQIADLMNDTRTLHAAQSE 652 Query: 663 AKHILTQDPDLTS 675 A +L DP L S Sbjct: 653 AIALLAADPLLES 665 >gi|228922609|ref|ZP_04085909.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837038|gb|EEM82379.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 682 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 234/663 (35%), Positives = 378/663 (57%), Gaps = 33/663 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G + S L ++ ++ LL + P + D + ++E+ + VT Sbjct: 8 PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G I Q ++ ++ + G IT + F R K E +T+TGK Sbjct: 61 VEGKIHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLKLDE--TVTITGKW 118 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184 + + I + H+ V +E VYS+ L+V ++ I +AL S + V Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LP+ + L + K P EA +H P +D + AR R Y+E Q+ + +R Sbjct: 175 LPDGL---LGRYKLLPRY-EALRALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227 Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 K + + G + Q+ + +PF T +Q + +IL+DM+ RM R+LQGDVG Sbjct: 228 KMERENSKGTKKEIPSVELQEFIDALPFPLTGAQRRVVDEILKDMTSPYRMNRLLQGDVG 287 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA I + A+ A Q +M P ILA+QHY+ + + + I VE++T ++ A Sbjct: 288 SGKTVVAAIGLYASKLAHYQGALMVPTEILAEQHYQSLAETFSHFGIKVELLTSSVKGAR 347 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L ++ G+ I++GTHAL QD + +++L LVI DEQHRFGV QR L +K +P V Sbjct: 348 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D V+ ++ + +G+ Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541 +AY ICP IEE ++ + ++ ++ + L H+ + ++HGR+S +KE +M F Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+ P S Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660 + R+ ++ T DGF+++E+DL+ R G+ G KQSG+P+F +A +HD LE AR Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645 Query: 661 KDA 663 +DA Sbjct: 646 QDA 648 >gi|23098975|ref|NP_692441.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831] gi|22777203|dbj|BAC13476.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831] Length = 676 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 241/679 (35%), Positives = 379/679 (55%), Gaps = 34/679 (5%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G+K + L+ + N D+L Y P + D + + E+ + VT Sbjct: 5 PVTEVKGIGEKVAEQLATM------NIYTVEDMLEYFPYRY-DIFEKKPLHELIHDDKVT 57 Query: 72 ITGYISQHSSFQLQKRRPYKILLN---DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 I G + S R+ ++ DG ++F K IT+TGK Sbjct: 58 IEGIVVHDPSLTFYGRKKSRLTFTVEVDGVAVKAVMF---NRSFAKKQITSQSWITLTGK 114 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPE 187 +R+ + +Y ++ + I+ +YS+ + F+K+I L + + E Sbjct: 115 WDA--HRLQITVSNYQLGRMEEKS--AIKPIYSVKGDFTSYKFQKLISNTLKDSVTEIKE 170 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247 + L + PS A +H P KD AR R Y+E L Q+ + L RK+ Sbjct: 171 ILPATYLDQYKLPSRENAVKTMHFP---KDRVELKHARRRFIYEEFLLFQLKMQLFRKKH 227 Query: 248 KKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 ++ G + + + +++ PF T +Q A+K IL DM +RM R+LQGDVGSGK Sbjct: 228 RESTTGNRQDFDQEKLTSFIKSFPFKLTDAQNRALKQILNDMKDPHRMNRLLQGDVGSGK 287 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK-YTQNTQIIVEIITGNMPQAHRR 365 T VA I + A+V +G Q +M P ILA+QH++ +++ + + +I ++TG++ RR Sbjct: 288 TAVAAICLYASVTSGQQGALMVPTEILAEQHFQSLQQMFGERAEIA--LLTGSVKGKKRR 345 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + E+I + + I+IGTHAL Q + + L LVIVDEQHRFGV+QR L K P VL Sbjct: 346 ELTEKIENQKIDIVIGTHALIQGDVFFKNLGLVIVDEQHRFGVEQRRVLRDKGLHPDVLF 405 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ GD+D+S I + P+GRK I+T+ + N D +++ ++ + EG++A Sbjct: 406 MTATPIPRTLAITAFGDMDVSVIDQLPSGRKEIETLWVKANTFDRILDFVRKRVDEGEQA 465 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCK 543 Y I P IEE + + ++ VE ++ L +++ I I +HGR++ +KE VM F + Sbjct: 466 YVISPLIEESDKLDIQNAVELYHQLEAYYSDDIRIGLMHGRLTANEKEDVMRQFAENKIQ 525 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTV+EVG++V +A+I+II +AE FGL+QLHQLRGRVGRGE+ S CIL+ P + Sbjct: 526 VLVSTTVVEVGVNVPNATIMIIYDAERFGLSQLHQLRGRVGRGEKQSYCILIAEPK-GEI 584 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKD 662 R+ ++ T DGF ++E+DL+ R G+ G KQSGMP+F +A +HD LE AR D Sbjct: 585 GKERMRIMTETTDGFELSEQDLQLRGPGDFFGKKQSGMPEFKVADM-VHDYRALETARDD 643 Query: 663 AKHILT----QDPDLTSVR 677 A IL ++ D VR Sbjct: 644 ASIILENNLLEEEDYQQVR 662 >gi|104774262|ref|YP_619242.1| ATP-dependent DNA helicase RecG [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423343|emb|CAI98190.1| ATP-dependent DNA helicase RecG [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 679 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 229/673 (34%), Positives = 369/673 (54%), Gaps = 26/673 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 +F P++ +GVG K + L + DLLFY P + + P + ++ + + Sbjct: 7 IFRPVTALKGVGAKTAEALQSL------GIYSIYDLLFYFPYRYDELENLP-LDQLEDGQ 59 Query: 69 IVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124 V + G ++ + + F K R +K+ ++ +I ++ F+ + + K + G++I Sbjct: 60 KVMLKGIVATNPYQNYFGYHKSRVSFKLRIDH---DIIMVNFFNQPWLTKQLSV-GQEIA 115 Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LP 183 V GK L+ + + + NS D P +YS+ + + +I A++ + Sbjct: 116 VYGKYD-LRKQSLSAYKLLANKNSDDGMAP----IYSINRQIKQKKLQTMIDLAIAESMD 170 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 + + +DL + + + +H+P KD AR + E Q+ L LM Sbjct: 171 EMGNAVPEDLRKHYRLMADQDLVIAMHHP---KDLAEAKEARRSAVFREFFLFQMQLALM 227 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 Q K G + + + K+ +++PF+ + Q+ I +I DM +M R+LQGDVG Sbjct: 228 SSQNKSHSGYAKHYDLEEIGKLTKSLPFALSPDQKKVINEIFADMFVDQQMQRLLQGDVG 287 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA+ A+ AV AG QA +M P ILA QHY I ++ + V ++TG+ Sbjct: 288 SGKTVVAVFAIYGAVTAGYQAALMVPTEILANQHYHKISAMLEDFGVRVALLTGSTKTME 347 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ + +A G +++IGTHAL Q+ + + KL LVI+DEQHRFGV QRL L K P + Sbjct: 348 RREIYKELADGSINVVIGTHALIQEQVAFKKLGLVIIDEQHRFGVVQRLALINKGDRPDI 407 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPR+L LT GD +S+I PAGRKPIK+ +++DEV ++ L+EG Sbjct: 408 LAMTATPIPRSLALTVYGDTALSEIRHLPAGRKPIKSYWKTSSQLDEVYSLMRQQLAEGF 467 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTC 542 + Y + P I E + + + + L F + ++HG+M+ DKE +MD F G Sbjct: 468 QIYAVTPLISESEMIDLENAEALHDRLAGEFPDQEVVLLHGKMAAADKEQIMDRFAAGEV 527 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 +L+ T+VIEVG+DV +A++++I +A+ FGL+QLHQLRGR+GRG+ S C+ L P ++ Sbjct: 528 DILVTTSVIEVGVDVANANLMVIFDADRFGLSQLHQLRGRIGRGQTQSYCVFLADPK-TE 586 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662 R+ ++ T DGF +AEEDLK R EG++ G QSG+P+F ++ +AR + Sbjct: 587 AGKQRMKIVAETNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRTGSVVSDYQVMVVARDE 646 Query: 663 AKHILTQDPDLTS 675 AK I+ DPDL + Sbjct: 647 AKRIVQADPDLKT 659 >gi|163814174|ref|ZP_02205566.1| hypothetical protein COPEUT_00328 [Coprococcus eutactus ATCC 27759] gi|158450623|gb|EDP27618.1| hypothetical protein COPEUT_00328 [Coprococcus eutactus ATCC 27759] Length = 678 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 229/662 (34%), Positives = 361/662 (54%), Gaps = 30/662 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 + T +G+G K + +SK+ DLL Y+P ++I I + ++ Sbjct: 7 IKTIKGIGDKTAAAMSKL------GIYTVSDLLMYYPRTYISYEDPVDIENLQTGMRQSV 60 Query: 73 TGYISQHSSFQLQKRRPYKILL---NDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 I +S +++K R I + D +G I L++F L+N F G++ +G++ Sbjct: 61 RVMI--NSRVEVRKVRGLTISIVYAKDFSGTIKLMWF--NCPFLRNFFHIGQEFVFSGEV 116 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + M P Y + + + VY++ G++ +K AL L +++ Sbjct: 117 SYKSGMMTMTQPEYYTPDKYSELTNVWQPVYTVTPGITSKTIQKAARNALPAASGLVDYL 176 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF-- 247 +D+L + + EA IH P + A +R+A+DE + ++ F Sbjct: 177 PEDVLSEYGIMDLPEAVASIHFPADEYHLKL---AVKRIAFDEFYGFISDMHRLKSDFAG 233 Query: 248 -KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 + E I + E ++ + + F+ T +Q +A++D+L+DMS + M R++QGDVGSGK Sbjct: 234 YRNECVISCDEE---VRRFIEKLSFTLTNAQMNAVRDMLEDMSSDHVMNRLIQGDVGSGK 290 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366 T+VA + + AA +G Q VIMAP +LA QHY+ + + I V ++TG+M +R Sbjct: 291 TIVAAVGLFAAAVSGWQGVIMAPTEVLAVQHYKELHAQFEPYGISVGLLTGSMTVKEKRL 350 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426 + I +G +I+GTHAL QD ++Y +L LV+ DEQHRFGV+QR KLT+K PH L+M Sbjct: 351 MYQDIKNGDVSVIVGTHALIQDKVEYNRLGLVVTDEQHRFGVKQREKLTEKGGHPHTLVM 410 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486 +ATPIPRTL + GD+DIS I E PAGR PIK ++ + + +S+G + Y Sbjct: 411 SATPIPRTLAIIMYGDLDISVIDELPAGRIPIKNCVVDESYRKTAQSFIMKEVSKGHQVY 470 Query: 487 WICPQIEEKKE-SNFRSVVERFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKN 539 +CP +E + + +V E L E S + +HG+M +K +++D F N Sbjct: 471 IVCPMVEASEVLDDVANVTEYTEELRETLRSQYGGDIQVTCLHGKMKADEKNAILDDFSN 530 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G+ +L++TTVIEVGI+ +A+++++ENAE FGLAQLHQLRGRVGRG+ S CI + Sbjct: 531 GSISILVSTTVIEVGINNPNATVMMVENAERFGLAQLHQLRGRVGRGKLQSYCIFVSGKK 590 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 K++ RL VL+ + DGF IA EDLK R G+ GI+QSG F I H +L+ A Sbjct: 591 -DKDTMERLEVLEKSNDGFYIAGEDLKMRGPGDFFGIRQSGEVMFKIGDIYNHADMLKAA 649 Query: 660 RK 661 +K Sbjct: 650 QK 651 >gi|52141640|ref|YP_085196.1| ATP-dependent DNA helicase [Bacillus cereus E33L] gi|51975109|gb|AAU16659.1| ATP-dependent DNA helicase [Bacillus cereus E33L] Length = 682 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 229/663 (34%), Positives = 375/663 (56%), Gaps = 33/663 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G + S L ++ ++ LL + P + D + ++E+ + VT Sbjct: 8 PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G + Q ++ ++ + G IT + F R K +T+TGK Sbjct: 61 VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRP--YYKQKLNLDETVTITGKW 118 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184 + + I + H+ V +E VYS+ L+V ++ I +AL S + V Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LP LL + EA +H P +D + AR R Y+E Q+ + +R Sbjct: 175 LP----NGLLSRYKLLPRYEALRALHFPTGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227 Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 K + + G + + Q+ + +PF T +Q + +I++DM+ RM R+LQGDVG Sbjct: 228 KMERENSKGTKKEIPSEELQEFIDTLPFPLTGAQRRVVDEIMKDMTSPYRMNRLLQGDVG 287 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA I + AA A Q +M P ILA+QHY+ + + + + VE++T ++ Sbjct: 288 SGKTVVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGVR 347 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L ++ G+ I++GTHAL QD + +++L LVI DEQHRFGV QR L +K +P V Sbjct: 348 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D V+ ++ +++G+ Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEINKGR 467 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541 +AY ICP IEE ++ + ++ ++ + L H+ + ++HGR+S +KE +M F Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+ P S Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660 + R+ ++ T DGF+++E+DL+ R G+ G KQSG+P+F +A +HD LE AR Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645 Query: 661 KDA 663 +DA Sbjct: 646 QDA 648 >gi|17232281|ref|NP_488829.1| ATP-dependent DNA helicase RecG [Nostoc sp. PCC 7120] gi|17133926|dbj|BAB76488.1| DNA helicase [Nostoc sp. PCC 7120] Length = 822 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 230/650 (35%), Positives = 373/650 (57%), Gaps = 23/650 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99 DLLFY+P ID + I E+ VTI + + + F K + IL L D TG Sbjct: 153 DLLFYYPRDHIDYARQVNIRELEAGETVTIVATVKKCNCFTSPKNQKLSILELILKDNTG 212 Query: 100 EITLLFFYRKT--------EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQD 150 +I + F E LK + G + G +K K + + +P + N D Sbjct: 213 QIKISRFSAGARFTSRAWQESLKRRYPVGSVLAACGLVKGTKYGLTLDNPELEVLANPGD 272 Query: 151 ----VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206 + + +YSL G+ + ++ ++ AL L + + K L +K + +A Sbjct: 273 TIESLTMGRVVPIYSLTEGVMASMVRQAVLAALPAAVHLKDPLPKGLREKYGLMELKDAI 332 Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK-EIGIPINVEGKIAQKI 265 IH P ++ + AR RL +DE Q+ LL ++Q K + + +GK+ + Sbjct: 333 ANIHFPDESATLQV---ARRRLVFDEFFYLQLGLLQRQQQAKAIQTSAILAPKGKLIENF 389 Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 +PF T +Q+ + DIL D+ + M R++QGDVGSGKT+VA++A+ AA+++G QA Sbjct: 390 YEILPFQLTGAQQRVLNDILNDLQKSAPMNRLVQGDVGSGKTVVAVVAILAAIQSGYQAA 449 Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +MAP +LA+QHY + + + VE++TG+ RR+ ++ G+ +++GTHAL Sbjct: 450 LMAPTEVLAEQHYRKLVSWFNLLHLPVELLTGSTKTVKRRQIHSQLETGELPLLVGTHAL 509 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445 QD + + +L LV++DEQHRFGV+QR L QK PHVL MTATPIPRTL LT GD+++ Sbjct: 510 IQDPVNFQRLGLVVIDEQHRFGVKQRALLQQKGEQPHVLTMTATPIPRTLALTIHGDMNV 569 Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 S+I E P GR+ I+T ++ + + + ++ +++G++ Y + P +EE ++ + RS VE Sbjct: 570 SQIDELPPGRQKIQTTMLSGQQRPQAYDLIRREIAQGRQTYVVLPLVEESEKLDLRSAVE 629 Query: 506 RFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 L E + ++HGRMS +K+ + F++ ++L++TTV+EVG+DV +A+++ Sbjct: 630 EHQKLQESVFPDFQVGLLHGRMSSAEKDEAITKFRDNETQILVSTTVVEVGVDVPNATVM 689 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623 +IENAE FGL+QLHQLRGRVGRG S C+L+ S ++ RL VL+ ++DGF I+E Sbjct: 690 LIENAERFGLSQLHQLRGRVGRGAAQSYCLLM-SSSRSPDAQQRLKVLEQSQDGFFISEM 748 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 D++ R GE+LG +QSG+P F +A + +L +AR+ A+ ++ D L Sbjct: 749 DMRFRGPGEVLGTRQSGVPDFTLASLVEDEEVLLLARQAAEKVIEIDASL 798 >gi|218290485|ref|ZP_03494605.1| ATP-dependent DNA helicase RecG [Alicyclobacillus acidocaldarius LAA1] gi|218239506|gb|EED06701.1| ATP-dependent DNA helicase RecG [Alicyclobacillus acidocaldarius LAA1] Length = 678 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 223/635 (35%), Positives = 352/635 (55%), Gaps = 21/635 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLN----DGT 98 DLL +P + +R +P + +R+ T Q++ R I+ DG Sbjct: 32 DLLHTYPFRYDERAEKPFPEWRNGDRV---TARAVVEGPVQVRWRGSKSIMTARVRVDGQ 88 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 + L+F L++ +GR + VTGK + R+++ + P + Sbjct: 89 HPVVCLWF--SQHYLRSKLSDGRFVVVTGKWNETLRRLVVSETSF----DAVAQAPSLVP 142 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 VY +S ++I++AL + + E + L++K + +A +H P+ +D Sbjct: 143 VYRASKDISTKAIHQLILKALEQYADQIAESLPYALVRKYRLWTHRDALFGMHRPKSLED 202 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 AR RL ++E L QI L +R + ++ +G V + +P T +Q Sbjct: 203 ---VRQARRRLVFEEFLLFQIQLQWLRAKREEPVGRAQPVPDDALTAFVALLPGPMTDAQ 259 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 A +DIL+D+ + M R++QGDVGSGKT VAL A A A GQ+ +MAP ILA+QH Sbjct: 260 RRACEDILRDLQRPVPMTRLIQGDVGSGKTWVALFACFAVHLARGQSALMAPTEILAEQH 319 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 ++ + VE++TG++ R + L +A G + +GTHAL + +++ L L Sbjct: 320 ARLAQQLLGPAGVRVELLTGSVTGRERERVLAGLASGDVSLAVGTHALLSEGVEFRDLAL 379 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 ++ DEQHRFGV QR +L +K AP VL+++ATPIPRTL L GD+D+S + E P GR+P Sbjct: 380 LVTDEQHRFGVAQRARLREKGRAPDVLMLSATPIPRTLALAIYGDMDVSILNELPKGRRP 439 Query: 458 IKTVIIPINRIDEVIERL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 ++T+ + +R DE + RL + L+ G +AY + P IE ++ + SV E + + EH Sbjct: 440 VQTIAVS-SRDDETVLRLIRRELARGHQAYIVAPAIEASEQDDVASVTELYERVREHLAG 498 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + ++HGRM DKE +M +F++G L+ATTVIEVGIDV +A+++ I AE FGLAQ Sbjct: 499 FRVELLHGRMPSADKERMMRAFRDGEIHALVATTVIEVGIDVPNATVMAIYGAERFGLAQ 558 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG S C+L+ H S+ + R+ + T DGF IAE DL+ R GE+ G Sbjct: 559 LHQLRGRVGRGPHRSYCLLI-HDASSEAARARIETMLQTNDGFEIAERDLELRGPGELFG 617 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670 ++QSG+P+F + ++E+AR++A +L +D Sbjct: 618 LRQSGLPEFALGDLARDYRIMEVAREEALALLRRD 652 >gi|324327752|gb|ADY23012.1| ATP-dependent DNA helicase RecG [Bacillus thuringiensis serovar finitimus YBT-020] Length = 682 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 229/663 (34%), Positives = 375/663 (56%), Gaps = 33/663 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G + S L ++ ++ LL + P + D + ++E+ + VT Sbjct: 8 PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G + Q ++ ++ + G IT + F R K +T+TGK Sbjct: 61 VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRP--YYKQKLNLDETVTITGKW 118 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184 + + I + H+ V +E VYS+ L+V ++ I +AL S + V Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LP+ LL + EA +H P +D + AR R Y+E Q+ + +R Sbjct: 175 LPD----GLLSRYKLLPRYEALRALHFPSGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227 Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 K + + G + + Q+ + +PF T +Q + +I++DM+ RM R+LQGDVG Sbjct: 228 KMERENSKGTKKEIPSEELQEFIDALPFPLTGAQRRVVDEIMKDMTSPYRMNRLLQGDVG 287 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA I + AA A Q +M P ILA+QHY+ + + + + VE++T ++ Sbjct: 288 SGKTVVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGVR 347 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L ++ G+ I++GTHAL QD + +++L LVI DEQHRFGV QR L +K +P V Sbjct: 348 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D V+ ++ + +G+ Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541 +AY ICP IEE ++ + ++ ++ + L H+ + ++HGR+S +KE +M F Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+ P S Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660 + R+ ++ T DGF+++E+DL+ R G+ G KQSG+P+F +A +HD LE AR Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645 Query: 661 KDA 663 +DA Sbjct: 646 QDA 648 >gi|189462953|ref|ZP_03011738.1| hypothetical protein BACCOP_03655 [Bacteroides coprocola DSM 17136] gi|189430235|gb|EDU99219.1| hypothetical protein BACCOP_03655 [Bacteroides coprocola DSM 17136] Length = 699 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 236/670 (35%), Positives = 372/670 (55%), Gaps = 22/670 (3%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITG 74 +GVG + + L+K +N F DLL Y P ++DR I EI + + G Sbjct: 12 LQGVGPQRAAILNKELNI-----YSFRDLLCYFPYKYVDRSRLYYIHEIDGNMPYIQLKG 66 Query: 75 YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134 + + ++R +DGTG + L++F + + + + + V GK Sbjct: 67 KVLSFETMGEGRQRRLVGHFSDGTGIVDLVWF-QGLKFIMGKYKANEEYIVFGKPTIFNG 125 Query: 135 RIIMVHPHYIFHNSQDVNFPLIEAVYSLP-----TGLSVDLFKKIIVEALSRL--PVLPE 187 RI + HP ++ ++ Y+ + L+ +K++ L ++ E Sbjct: 126 RINIAHPDIDPAQELTLSTMGLQPYYNTTEKMKRSNLNSHALEKLMKNLFGALQKEIIEE 185 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247 + L+ + +A IH P+ + A+ RL ++EL Q+ +L K+ Sbjct: 186 TLSPQLVDHYRLMPLTDALYNIHFPQNP---DLLRRAQYRLKFEELFYVQLNILRYTKER 242 Query: 248 KKEI-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + G+ G+I +N+PF T +Q+ IK++ +DM +M R+LQGDVGSG Sbjct: 243 RNKFRGLVFGKVGEIFNTFYSQNLPFQLTGAQKRVIKEMRRDMGSGRQMNRLLQGDVGSG 302 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KTLVAL+ M A++ G QA +MAP ILA QHYE I ++ + VE++TG + R Sbjct: 303 KTLVALMTMLIALDNGYQACMMAPTEILATQHYETICRFLAGMNVRVELLTGTVKGKRRE 362 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVL 424 L+ + G HI+IGTHA+ +D++ + L LV++DEQHRFGV QR KL K T PHVL Sbjct: 363 TILKDLVTGDVHILIGTHAVIEDTVNFSSLGLVVIDEQHRFGVAQRAKLWAKNTCPPHVL 422 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 +MTATPIPRTL +T GD+D+S I E P GRKPI+TV NR + ++ + EG++ Sbjct: 423 VMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTVHQFDNRRASMYAFIRKQIQEGRQ 482 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCK 543 AY + P I+E ++ + +++ + + + E F ++ +HG+M +K+ M F + Sbjct: 483 AYIVYPLIQESEKMDIKNLEDGYMHICEEFPEYKVSKVHGKMKPAEKDEEMQRFLANETQ 542 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +++ATTVIEVG++V +AS+++IENAE FGL+QLHQLRGRVGRG + S CIL+ L++ Sbjct: 543 IMVATTVIEVGVNVPNASVMVIENAERFGLSQLHQLRGRVGRGADQSYCILVTGYKLTEE 602 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKD 662 + R+ ++ T DGF IAE DLK R G++ G +QSG+ L IA LL+ R+ Sbjct: 603 TRKRIEIMVQTNDGFEIAEADLKLRGPGDLEGTQQSGVAFDLKIADIARDGQLLQFVREI 662 Query: 663 AKHILTQDPD 672 A+H+L DP+ Sbjct: 663 AEHLLDADPN 672 >gi|30263858|ref|NP_846235.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. Ames] gi|47778232|ref|YP_022668.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. 'Ames Ancestor'] gi|49186705|ref|YP_029957.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. Sterne] gi|65321183|ref|ZP_00394142.1| COG1200: RecG-like helicase [Bacillus anthracis str. A2012] gi|165873284|ref|ZP_02217892.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0488] gi|167636663|ref|ZP_02394953.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0442] gi|167642024|ref|ZP_02400255.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0193] gi|170689646|ref|ZP_02880827.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0465] gi|170709348|ref|ZP_02899763.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0389] gi|177655967|ref|ZP_02937119.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0174] gi|190566221|ref|ZP_03019140.1| ATP-dependent DNA helicase RecG [Bacillus anthracis Tsiankovskii-I] gi|196035896|ref|ZP_03103298.1| ATP-dependent DNA helicase RecG [Bacillus cereus W] gi|196047426|ref|ZP_03114638.1| ATP-dependent DNA helicase RecG [Bacillus cereus 03BB108] gi|218904985|ref|YP_002452819.1| ATP-dependent DNA helicase RecG [Bacillus cereus AH820] gi|225865836|ref|YP_002751214.1| ATP-dependent DNA helicase RecG [Bacillus cereus 03BB102] gi|227813237|ref|YP_002813246.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. CDC 684] gi|228916492|ref|ZP_04080058.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928903|ref|ZP_04091935.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935169|ref|ZP_04097996.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947574|ref|ZP_04109864.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228986998|ref|ZP_04147124.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229092898|ref|ZP_04224032.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock3-42] gi|229123369|ref|ZP_04252573.1| ATP-dependent DNA helicase recG [Bacillus cereus 95/8201] gi|229157431|ref|ZP_04285509.1| ATP-dependent DNA helicase recG [Bacillus cereus ATCC 4342] gi|229186095|ref|ZP_04313264.1| ATP-dependent DNA helicase recG [Bacillus cereus BGSC 6E1] gi|229603604|ref|YP_002868092.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0248] gi|254683437|ref|ZP_05147297.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. CNEVA-9066] gi|254721386|ref|ZP_05183175.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A1055] gi|254735893|ref|ZP_05193599.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. Western North America USA6153] gi|30258502|gb|AAP27721.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. Ames] gi|47551937|gb|AAT35402.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. 'Ames Ancestor'] gi|49180632|gb|AAT56008.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. Sterne] gi|164710969|gb|EDR16538.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0488] gi|167510023|gb|EDR85438.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0193] gi|167527914|gb|EDR90730.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0442] gi|170125743|gb|EDS94655.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0389] gi|170666391|gb|EDT17173.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0465] gi|172079911|gb|EDT65018.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0174] gi|190563140|gb|EDV17106.1| ATP-dependent DNA helicase RecG [Bacillus anthracis Tsiankovskii-I] gi|195991545|gb|EDX55511.1| ATP-dependent DNA helicase RecG [Bacillus cereus W] gi|196021734|gb|EDX60429.1| ATP-dependent DNA helicase RecG [Bacillus cereus 03BB108] gi|218539493|gb|ACK91891.1| ATP-dependent DNA helicase RecG [Bacillus cereus AH820] gi|225787117|gb|ACO27334.1| ATP-dependent DNA helicase RecG [Bacillus cereus 03BB102] gi|227004793|gb|ACP14536.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. CDC 684] gi|228597271|gb|EEK54922.1| ATP-dependent DNA helicase recG [Bacillus cereus BGSC 6E1] gi|228626158|gb|EEK82907.1| ATP-dependent DNA helicase recG [Bacillus cereus ATCC 4342] gi|228660145|gb|EEL15781.1| ATP-dependent DNA helicase recG [Bacillus cereus 95/8201] gi|228690520|gb|EEL44303.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock3-42] gi|228772776|gb|EEM21216.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228812094|gb|EEM58425.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824534|gb|EEM70339.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830710|gb|EEM76315.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843071|gb|EEM88153.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268012|gb|ACQ49649.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0248] Length = 682 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 229/663 (34%), Positives = 376/663 (56%), Gaps = 33/663 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G + S L ++ ++ LL + P + D + ++E+ + VT Sbjct: 8 PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G + Q ++ ++ + G IT + F R K +T+TGK Sbjct: 61 VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRP--YYKQKLNLDETVTITGKW 118 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184 + + I + H+ V +E VYS+ L+V ++ I +AL S + V Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LP+ LL + EA +H P +D + AR R Y+E Q+ + +R Sbjct: 175 LPD----GLLSRYKLLPRYEALRALHFPTGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227 Query: 245 KQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 K ++ G + + Q+ + +PF T +Q + +I++DM+ RM R+LQGDVG Sbjct: 228 KMERENSKGTKKEIPSEELQEFIDALPFPLTGAQRRVVDEIMKDMTSPYRMNRLLQGDVG 287 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA I + AA A Q +M P ILA+QHY+ + + + + VE++T ++ Sbjct: 288 SGKTVVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGVR 347 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L ++ G+ I++GTHAL QD + +++L LVI DEQHRFGV QR L +K +P V Sbjct: 348 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D V+ ++ +++G+ Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEINKGR 467 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541 +AY ICP IEE ++ + ++ ++ + L H+ + ++HGR+S +KE +M F Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+ P S Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660 + R+ ++ T DGF+++E+DL+ R G+ G KQSG+P+F +A +HD LE AR Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645 Query: 661 KDA 663 +DA Sbjct: 646 QDA 648 >gi|331085071|ref|ZP_08334158.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408771|gb|EGG88236.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium 9_1_43BFAA] Length = 685 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 229/674 (33%), Positives = 369/674 (54%), Gaps = 33/674 (4%) Query: 13 LSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKIS--EISEER 68 + +G+G+K K + G DL+ Y P + Y P +S EI E++ Sbjct: 7 VGELKGIGEKTEKLFQKLGVFTVG--------DLIRYFPRGY--DVYDPPVSIGEIQEQK 56 Query: 69 IVTITGYISQHSSFQLQKR--RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 + + G I + + Q+ R + L D TG I ++++ + L+N G+ + + Sbjct: 57 VQAVRGMI--YGTLQVSSRGAQVTSGYLKDMTGTIKVVWY--RMPFLRNTLQNGQIVILR 112 Query: 127 GKIKKLKNRIIMVHPHYIFH--NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184 G++ K +M HP IF +S + ++ +Y L GL+ + K + +AL L + Sbjct: 113 GRVVTKKGVRVMEHPE-IFSPADSYEKKLDTLQPIYPLTAGLTNNAVMKAVRQALEYLEL 171 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 E + + K + IH P++ ++F ARERL ++E L ++L M+ Sbjct: 172 QKEILPATVRMKYHLAEYNFSVRGIHFPKEKQEF---YQARERLVFEEFLVFILSLRQMK 228 Query: 245 -KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 K+ + PI+ +I + L+ +P+ T +Q+ + + +DM+ + M R++QGDVG Sbjct: 229 EKKERSRNQFPIHPSEEI-EAFLKKLPYELTNAQKKVWEQLQKDMAGTHTMARLIQGDVG 287 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQ 361 SGKT++A+++ + G Q +MAP +LA+QH++ I + + +I VE++TG+M Sbjct: 288 SGKTIIAVLSFMSVAFCGWQGAMMAPTEVLARQHFDSITEMFEQYEIPLKVELLTGSMTA 347 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 +R A RI GQA II+GTHAL Q+ + Y L LV+ DEQHRFGV+QR + K P Sbjct: 348 KEKRLAYGRIESGQAQIIVGTHALIQEKVTYANLALVVTDEQHRFGVKQREQFAGKGELP 407 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 H+L+M+ATPIPRTL + GD+D+S I E PA R PIK ++ + + ++ ++E Sbjct: 408 HILVMSATPIPRTLAIILYGDLDVSVIDELPANRLPIKNCVVDTSYRKTAYQFIRRQVAE 467 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKN 539 G++ Y ICP +EE + +V++ L I + +HG+M K+ +M+ F Sbjct: 468 GRQCYVICPMVEESEHMEAENVIDYAEKLQGELGEDIIVDFLHGKMKQSQKDEIMERFGK 527 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 ++L++TTVIEVGI+V +A++++IENAE FGLAQLHQLRGRVGRG S CI + Sbjct: 528 NESQVLVSTTVIEVGINVPNATVMMIENAERFGLAQLHQLRGRVGRGNYQSYCIFMSGSK 587 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 K + RL +L + DGF IA EDLK R G++ GI+QSG+ F + +L+ A Sbjct: 588 -GKETKERLEILNRSNDGFYIANEDLKLRGPGDLFGIRQSGLMDFRLGDVFQDAKILQRA 646 Query: 660 RKDAKHILTQDPDL 673 + A IL L Sbjct: 647 NEAADWILKNGKGL 660 >gi|228940943|ref|ZP_04103502.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973872|ref|ZP_04134448.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980462|ref|ZP_04140772.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis Bt407] gi|228779282|gb|EEM27539.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis Bt407] gi|228785897|gb|EEM33900.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818779|gb|EEM64845.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941624|gb|AEA17520.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar chinensis CT-43] Length = 682 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 232/663 (34%), Positives = 378/663 (57%), Gaps = 33/663 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G + S L ++ ++ LL + P + D + ++E+ + VT Sbjct: 8 PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G + Q ++ ++ + G IT + F R K E +T+TGK Sbjct: 61 VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLTLDE--TVTITGKW 118 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184 + + I + H+ V +E VYS+ L+V ++ I +AL S + V Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LP+ + L + K P EA +H P +D + AR R Y+E Q+ + +R Sbjct: 175 LPDGL---LGRYKLLPRY-EALKALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227 Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 K + + G + Q+ + +PF T +Q + +IL+DM+ RM R+LQGDVG Sbjct: 228 KMERENSKGTKKEIPSVELQEFIDALPFPLTGAQRRVVDEILKDMTSPYRMNRLLQGDVG 287 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA I + A+ A Q +M P ILA+QHY+ + + + + VE++T ++ A Sbjct: 288 SGKTVVAAIGLYASKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGAR 347 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L ++ G+ I++GTHAL QD + +++L LVI DEQHRFGV QR L +K +P V Sbjct: 348 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D V+ ++ + +G+ Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541 +AY ICP IEE ++ + ++ ++ + L H+ + ++HGR+S +KE +M F Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+ P S Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660 + R+ ++ T DGF+++E+DL+ R G+ G KQSG+P+F +A +HD LE AR Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645 Query: 661 KDA 663 +DA Sbjct: 646 QDA 648 >gi|258648960|ref|ZP_05736429.1| ATP-dependent DNA helicase RecG [Prevotella tannerae ATCC 51259] gi|260850563|gb|EEX70432.1| ATP-dependent DNA helicase RecG [Prevotella tannerae ATCC 51259] Length = 702 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 250/678 (36%), Positives = 377/678 (55%), Gaps = 39/678 (5%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITG 74 +GVG + + LSK ++ + DLL+ P +IDR +I + E V I G Sbjct: 14 LKGVGPRRAELLSKELHIDSLG-----DLLYTFPFRYIDRSEVHEIQALQEGMPYVQIRG 68 Query: 75 -YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133 +IS + +K+R + DGTG + +++F + +K + G K Sbjct: 69 RFISFSEEGEGRKKR-ISAVFTDGTGYVDVVWFA-GLKYVKETLRYDETYLLLGTPKLFA 126 Query: 134 NRIIMVHPHY--IFHNSQDVNFPLIEAVYSLP-----TGLSVDLFKKIIVEALSRLPV-- 184 RI HP I ++ N L + VY G + K++ A + + Sbjct: 127 RRISFAHPELEKIAPDAPLQNLGL-QPVYHTTERMKKMGFTSKSMSKLMQAAFALIESTP 185 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LPE + +QK + +A H P + A RL ++EL Q+ +L Sbjct: 186 LPETLPAWFVQKHQLMELTKALLTAHFPPSSAAL---PEALRRLKFEELFYLQLDILRYM 242 Query: 245 KQFKKEIGIPINVEG----KIAQKILR----NIPFSPTKSQESAIKDILQDMSQKNRMLR 296 K + ++V+G K+ LR +PF T +Q+ I++I D+ +M R Sbjct: 243 KHRQ------LSVQGFCFPKVGNLFLRFFHERLPFELTGAQKRVIREIRNDVGSGRQMNR 296 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 +LQGDVGSGKT+VAL+A A++ G QA IMAP ILA+QH I + + + V ++T Sbjct: 297 LLQGDVGSGKTMVALMACLLALDNGFQACIMAPTEILAEQHLATITAFLGDLPLRVALLT 356 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-T 415 G + R++ L+ +A G ++IGTH L + ++++ L L ++DEQHRFGV+QR +L T Sbjct: 357 GIVKGKARQEILDGVADGSVQLLIGTHTLIEPTVRFLNLGLAVIDEQHRFGVKQRSQLWT 416 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 + PH+L+MTATPIPRTL +T GD+D+S I E P GRKPIKTV + ++ + L Sbjct: 417 KNIRPPHILVMTATPIPRTLAMTVYGDLDVSIIDELPPGRKPIKTVHYYQDNSSQLYDGL 476 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 + LS G++AY + P I+E + + +++ + F SL E F+ I ++HG+M I+KES M Sbjct: 477 RYQLSLGRQAYVVYPLIKENAQMDLKALEQGFESLREVFSDMDIGVVHGQMRPIEKESEM 536 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F G K+L++TTVIEVG++V +AS+++IENAE FGLAQLHQLRGRVGRG S CIL Sbjct: 537 ARFVRGETKILVSTTVIEVGVNVPNASVMVIENAERFGLAQLHQLRGRVGRGATQSYCIL 596 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHD 653 + LSK+S R+ ++ +T DGF IAE DLK R G++ G QSG+P L IA Sbjct: 597 VTKRELSKDSRARIGIMVDTNDGFEIAEADLKLRGPGDLEGTAQSGLPFDLKIANIVRDG 656 Query: 654 SLLEIARKDAKHILTQDP 671 +LL+ AR+ A+ I+ DP Sbjct: 657 NLLQTAREAAEAIIEADP 674 >gi|30021943|ref|NP_833574.1| ATP-dependent DNA helicase recG [Bacillus cereus ATCC 14579] gi|228960071|ref|ZP_04121735.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar pakistani str. T13001] gi|229047542|ref|ZP_04193132.1| ATP-dependent DNA helicase recG [Bacillus cereus AH676] gi|229111326|ref|ZP_04240879.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock1-15] gi|229129131|ref|ZP_04258104.1| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-Cer4] gi|229146426|ref|ZP_04274797.1| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-ST24] gi|229152054|ref|ZP_04280249.1| ATP-dependent DNA helicase recG [Bacillus cereus m1550] gi|296504350|ref|YP_003666050.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis BMB171] gi|29897499|gb|AAP10775.1| ATP-dependent DNA helicase recG [Bacillus cereus ATCC 14579] gi|228631403|gb|EEK88037.1| ATP-dependent DNA helicase recG [Bacillus cereus m1550] gi|228637059|gb|EEK93518.1| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-ST24] gi|228654368|gb|EEL10233.1| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-Cer4] gi|228672102|gb|EEL27393.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock1-15] gi|228723789|gb|EEL75144.1| ATP-dependent DNA helicase recG [Bacillus cereus AH676] gi|228799587|gb|EEM46540.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar pakistani str. T13001] gi|296325402|gb|ADH08330.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis BMB171] Length = 682 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 233/663 (35%), Positives = 378/663 (57%), Gaps = 33/663 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G + S L ++ ++ LL + P + D + ++E+ + VT Sbjct: 8 PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G + Q ++ ++ + G IT + F R K E IT+TGK Sbjct: 61 VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLKLDE--TITITGKW 118 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184 + + I + H+ V +E VYS+ L+V ++ I +AL S + V Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LP+ + L + K P EA +H P +D + AR R Y+E Q+ + +R Sbjct: 175 LPDGL---LGRYKLLPRY-EALRALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227 Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 K + + G + Q+ + +PF T +Q + +IL+DM+ RM R+LQGDVG Sbjct: 228 KMERENSKGTKKEIPSAELQEFIDALPFPLTGAQRRVVDEILKDMTSPYRMNRLLQGDVG 287 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA I + A+ A Q +M P ILA+QHY+ + + + + VE++T ++ A Sbjct: 288 SGKTVVAAIGLYASKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGAR 347 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L ++ G+ I++GTHAL QD + +++L LVI DEQHRFGV QR L +K +P V Sbjct: 348 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D V+ ++ + +G+ Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541 +AY ICP IEE ++ + ++ ++ + L H+ + ++HGR+S +KE +M F Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+ P S Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660 + R+ ++ T DGF+++E+DL+ R G+ G KQSG+P+F +A +HD LE AR Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645 Query: 661 KDA 663 +DA Sbjct: 646 QDA 648 >gi|118479077|ref|YP_896228.1| ATP-dependent DNA helicase RecG [Bacillus thuringiensis str. Al Hakam] gi|301055346|ref|YP_003793557.1| ATP-dependent DNA helicase [Bacillus anthracis CI] gi|118418302|gb|ABK86721.1| ATP-dependent DNA helicase RecG [Bacillus thuringiensis str. Al Hakam] gi|300377515|gb|ADK06419.1| ATP-dependent DNA helicase [Bacillus cereus biovar anthracis str. CI] Length = 685 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 229/663 (34%), Positives = 376/663 (56%), Gaps = 33/663 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G + S L ++ ++ LL + P + D + ++E+ + VT Sbjct: 11 PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G + Q ++ ++ + G IT + F R K +T+TGK Sbjct: 64 VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRP--YYKQKLNLDETVTITGKW 121 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184 + + I + H+ V +E VYS+ L+V ++ I +AL S + V Sbjct: 122 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 177 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LP+ LL + EA +H P +D + AR R Y+E Q+ + +R Sbjct: 178 LPD----GLLSRYKLLPRYEALRALHFPTGQEDLK---QARRRFVYEEFFLFQLKMQTLR 230 Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 K + + G + + Q+ + +PF T +Q + +I++DM+ RM R+LQGDVG Sbjct: 231 KMERENSKGTKKEIPSEELQEFIDALPFPLTGAQRRVVDEIMKDMTSPYRMNRLLQGDVG 290 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA I + AA A Q +M P ILA+QHY+ + + + + VE++T ++ Sbjct: 291 SGKTVVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGVR 350 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L ++ G+ I++GTHAL QD + +++L LVI DEQHRFGV QR L +K +P V Sbjct: 351 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 410 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D V+ ++ +++G+ Sbjct: 411 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEINKGR 470 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541 +AY ICP IEE ++ + ++ ++ + L H+ + ++HGR+S +KE +M F Sbjct: 471 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 530 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+ P S Sbjct: 531 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 589 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660 + R+ ++ T DGF+++E+DL+ R G+ G KQSG+P+F +A +HD LE AR Sbjct: 590 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 648 Query: 661 KDA 663 +DA Sbjct: 649 QDA 651 >gi|116514351|ref|YP_813257.1| ATP-dependent DNA helicase RecG [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093666|gb|ABJ58819.1| ATP-dependent DNA helicase RecG [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325126050|gb|ADY85380.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 679 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 229/673 (34%), Positives = 369/673 (54%), Gaps = 26/673 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 +F P++ +GVG K + L + DLLFY P + + P + ++ + + Sbjct: 7 IFRPVTALKGVGAKTAEALQSL------GIYSIYDLLFYFPYRYDELENLP-LDQLEDGQ 59 Query: 69 IVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124 V + G ++ + + F K R +K+ ++ +I ++ F+ + + K + G++I Sbjct: 60 KVMLKGIVATNPYQNYFGYHKSRVSFKLRIDH---DIIMVNFFNQPWLTKQLSV-GQEIA 115 Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LP 183 V GK L+ + + + NS D P +YS+ + + +I A++ + Sbjct: 116 VYGKYD-LRKQSLSAYKLLANKNSDDGMAP----IYSINRQIKQKKLQTMIDLAIAESMD 170 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 + + +DL + + + +H+P KD AR + E Q+ L LM Sbjct: 171 EMGNAVPEDLRKHYRLMADQDLVIAMHHP---KDLAEAKEARRSAVFREFFLFQMQLALM 227 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 Q K G + + + K+ +++PF+ + Q+ I +I DM +M R+LQGDVG Sbjct: 228 SSQNKSHSGYAKHYDLEEIGKLTKSLPFALSPDQKKVINEIFADMFVDQQMQRLLQGDVG 287 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA+ A+ AV AG QA +M P ILA QHY I ++ + V ++TG+ Sbjct: 288 SGKTVVAVFAIYGAVTAGYQAALMVPTEILANQHYHKISAMLEDFGVRVALLTGSTKTME 347 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ + +A G +++IGTHAL Q+ + + KL LVI+DEQHRFGV QRL L K P + Sbjct: 348 RREIYKELADGSINVVIGTHALIQEQVAFKKLGLVIIDEQHRFGVVQRLALINKGDRPDI 407 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPR+L LT GD +S+I PAGRKPIK+ +++DEV ++ L+EG Sbjct: 408 LAMTATPIPRSLALTVYGDTALSEIRHLPAGRKPIKSYWKTSSQLDEVYSLMRQQLAEGF 467 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTC 542 + Y + P I E + + + + L F + ++HG+M+ DKE +MD F G Sbjct: 468 QIYAVTPLISESEMIDLENAEALHDRLAGEFPDQEVVLLHGKMAAADKEQIMDRFAAGEV 527 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 +L+ T+VIEVG+DV +A++++I +A+ FGL+QLHQLRGR+GRG+ S C+ L P ++ Sbjct: 528 DILVTTSVIEVGVDVANANLMVIFDADRFGLSQLHQLRGRIGRGQTQSYCVFLADPK-TE 586 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662 R+ ++ T DGF +AEEDLK R EG++ G QSG+P+F ++ +AR + Sbjct: 587 AGKQRMKIVAETNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRTGSVVSDYQVMVVARDE 646 Query: 663 AKHILTQDPDLTS 675 AK I+ DPDL + Sbjct: 647 AKRIVQADPDLKA 659 >gi|332884646|gb|EGK04903.1| ATP-dependent DNA helicase RecG [Dysgonomonas mossii DSM 22836] Length = 698 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 249/684 (36%), Positives = 375/684 (54%), Gaps = 53/684 (7%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG K + L+K IN + DLL+Y P +IDR I EI + I G I Sbjct: 14 GVGPKKAEILNKEINVFSVE-----DLLYYFPYKYIDRSRIYFIHEIDGNMPYIQIRGRI 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 + +F +++ DGTG I L V+F+G K +T K K I Sbjct: 69 TAFETFGEGRKKRLVAHFTDGTGFIDL------------VWFQGAKF-ITDKYKVNLPYI 115 Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYS---LPTGL---------------SVDLFKKIIVEA 178 + P +F + ++ P I+ S PTGL + +KI+ A Sbjct: 116 VFGKPT-LFGDKFNIPHPDIDPYISEEERPTGLMPYYNTTEKMKNHYLNSKAIQKIMAAA 174 Query: 179 LSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE---RLAYDELL 234 S + LPE + ++ + + A IH P E T+ RE RL ++EL Sbjct: 175 FSSVVRSLPETLPDSIINEARLMGLKSAMRNIHFP------ESTALLREAQYRLKFEELF 228 Query: 235 AGQIALLLMRKQFKKEI-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKN 292 Q+ +L K ++ G + G + N+PF T +Q+ IK+I QDM+ Sbjct: 229 YIQLNILRYTADRKSKLKGFVFSKVGDYLNRFYDENLPFPLTNAQKRIIKEIRQDMATGE 288 Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352 +M R+LQGDVGSGKTLVAL+ M A++ QA +MAP ILA QHY+ I + + V Sbjct: 289 QMNRLLQGDVGSGKTLVALMLMLIALDNNFQAALMAPTEILATQHYQTITEALAGLDVNV 348 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 E++TG+ ++ R + + G I+IGTHAL +D++Q+ L LV++DEQHRFGV QR Sbjct: 349 ELLTGSTKKSDRERIHNALLTGDLQILIGTHALIEDTVQFSNLGLVVIDEQHRFGVAQRA 408 Query: 413 KLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471 KL K PH+L+MTATPIPRTL +T GD+D+S I E P GRKPI+T+ + + Sbjct: 409 KLWSKNVNPPHILVMTATPIPRTLAMTVYGDLDVSVIDELPPGRKPIQTIHQYDKKRGAL 468 Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530 E ++ L EG++ Y + P IEE ++ + +++ E F + E F ++ +HG+M +K Sbjct: 469 YESIRRQLQEGRQVYIVYPLIEESEKLDLKNLEEGFEHIKEIFPDYTVCKVHGKMKPKEK 528 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 ++ M F ++++ATTVIEVG++V +AS+++IE+A+ FGL+QLHQLRGRVGRG + S Sbjct: 529 DAEMQRFVTNEAQIMVATTVIEVGVNVPNASVMVIESAQRFGLSQLHQLRGRVGRGADQS 588 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQP 649 CIL+ LS ++ R+ ++ + DGF IAE DLK R G++ G +QSG+P IA Sbjct: 589 YCILVTPYELSADTRKRIDIMVESNDGFEIAEADLKLRGPGDLEGTQQSGIPFNLRIANL 648 Query: 650 ELHDSLLEIARKDAKHILTQDPDL 673 +L+ AR+ A+ +L +DP + Sbjct: 649 VRDGEILQYAREVAQKVLDEDPQM 672 >gi|291524768|emb|CBK90355.1| ATP-dependent DNA helicase RecG [Eubacterium rectale DSM 17629] Length = 688 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 237/682 (34%), Positives = 366/682 (53%), Gaps = 38/682 (5%) Query: 11 APLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 +P++ +G+G+K +K + G D+L + P ++ P+I++I E Sbjct: 5 SPITAVKGIGEKTQKAFAKMGVYTVG--------DILLHFPRDYVKF---PEITDIDELN 53 Query: 69 IVTITGYISQHSSFQ----LQKRRPYKILLND--GTGEITLLFFYRKTEMLKNVFFEGRK 122 V ++ + H+ + ++ +I L D G + L +YR LK +GR Sbjct: 54 NVNVSSTYAIHAVIKKAPVVKNTARMQITLQDIGSPGHMIQLVWYR-MPYLKAQLVQGRH 112 Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182 + G IK R +M P + ++ VYS+ +G++ +L K I E LS Sbjct: 113 LIFYGHIKPKGGRYVMEQPVVYEVQKYEAIRDTLQPVYSVTSGVTNNLIVKTIKETLSHD 172 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 +L +++ KD+ + F A IH P DF+ AR RL +DE + ++ Sbjct: 173 TLLSDYLPKDIRHRYGFCEYNYAMKQIHFP---DDFDALVEARRRLVFDEFF---LFIMG 226 Query: 243 MRKQFKKEIGIPINVE---GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 MR Q KK+ E +++ +P+ T +Q+ I +I QD+ M R++Q Sbjct: 227 MRYQNKKQQKDKNEFEFTDDAFIDRMIEKLPYELTGAQKKTIDEIKQDIKSPYVMQRLIQ 286 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE----FIKKYTQNTQIIVEII 355 GDVGSGKT+VA + MA A + G Q+ IMAP +LA QHYE + ++ ++ ++ ++ Sbjct: 287 GDVGSGKTIVAFLLMAWASKCGYQSAIMAPTEVLANQHYETFCSLVSQFGLDSPVV--LL 344 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 TG+M +R+A ER+ + + +IIGTHAL Q+ + L LVI DEQHRFGV+QR + Sbjct: 345 TGSMTAKQKREAYERLENEKNALIIGTHALIQEKADFSNLSLVITDEQHRFGVKQRESFS 404 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 K PH+L+M+ATPIPRTL + GD+DIS I E PA R PIK ++ + + Sbjct: 405 DKGRKPHILVMSATPIPRTLAIIIYGDMDISVINEVPAKRLPIKNCVVGTAFRPKAYSFI 464 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA--IIHGRMSDIDKESV 533 + + G +AY ICP +EE + S +V + N L I +++GRM K+ V Sbjct: 465 EEQVRAGHQAYVICPLVEETENSEGENVTDYANVLKAALPKDITVDVLNGRMKSKAKDEV 524 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M F N ++L++TTV+EVG++V +A++++IENA+ FGLAQLHQLRGRVGRG+ S CI Sbjct: 525 MQRFANNESQVLVSTTVVEVGVNVPNATVMMIENADRFGLAQLHQLRGRVGRGDAQSYCI 584 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 + SK S RL +L + DGF IA EDLK R G+ GI+QSG F +A Sbjct: 585 FINS-SNSKKSKKRLEILNKSNDGFYIASEDLKLRGPGDFFGIRQSGDLAFALADVYQDS 643 Query: 654 SLLEIARKDAKHILTQDPDLTS 675 +L+ A + +L DP L + Sbjct: 644 DVLKEASEMVDEVLEADPALCT 665 >gi|329963080|ref|ZP_08300860.1| ATP-dependent DNA helicase RecG [Bacteroides fluxus YIT 12057] gi|328529121|gb|EGF56051.1| ATP-dependent DNA helicase RecG [Bacteroides fluxus YIT 12057] Length = 698 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 233/642 (36%), Positives = 366/642 (57%), Gaps = 16/642 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101 DLL+Y P ++DR I EI + + G I + ++R +DGTG + Sbjct: 34 DLLYYFPYKYVDRSRIYSIREIDGTMPYIQLKGEILGFETAGEGRQRRLIAHFSDGTGIV 93 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161 L++F + + L + ++ V GK RI + HP + ++ ++ YS Sbjct: 94 DLVWF-QGIKYLVGKYKVHQEYIVFGKPTAFNGRINIAHPDIDLASELKLSSMGMQPYYS 152 Query: 162 LP-----TGLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215 + L+ +K++ + +L L E + +L + + EA IH P + Sbjct: 153 TTDKMKRSSLNSHAIEKMMSTVIQQLSEPLSETLSAAILNEHHLMPLTEALTHIHFPVNS 212 Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKIL-RNIPFSP 273 + A+ RL ++EL Q+ +L K +++ G G+I RN+PF Sbjct: 213 ---DLLRKAQYRLKFEELFYVQLNILRYAKDRQRKYRGYIFEKVGEIFNTFYSRNLPFEL 269 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T +Q+ +K+I +D+ +M R+LQGDVGSGKTLVAL++M A++ G QA +MAP IL Sbjct: 270 TNAQKRVLKEIRRDVGSGKQMNRLLQGDVGSGKTLVALMSMLMALDNGFQACMMAPTEIL 329 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A QHYE I++ + VE++TG++ R L + G HI+IGTHA+ +D++ + Sbjct: 330 ANQHYETIRELLYGMDVRVELLTGSIKGKRREAILAGLLTGDIHILIGTHAVIEDTVNFA 389 Query: 394 KLILVIVDEQHRFGVQQRLKL-TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452 L LV++DEQHRFGV QR +L T+ PHVL+MTATPIPRTL +T GD+D+S I E P Sbjct: 390 SLGLVVIDEQHRFGVAQRARLWTKNVQPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELP 449 Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512 GRKPI T+ NR + + ++ +SEG++ Y + P I+E ++ + +++ E + + E Sbjct: 450 PGRKPIATIHQFDNRRESLYRSVRKQISEGRQVYIVYPLIKESEKIDLKNLEEGYLHVCE 509 Query: 513 HF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 F + +HG+M +K++ M F G ++++ATTVIEVG++V +AS++IIENAE F Sbjct: 510 EFPECKVCKVHGKMKPAEKDAQMQQFVAGEAQIMVATTVIEVGVNVPNASVMIIENAERF 569 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631 GL+QLHQLRGRVGRG + S CIL+ L++++ RL ++ T DGF IAE DLK R G Sbjct: 570 GLSQLHQLRGRVGRGADQSYCILVTGYKLAEDTRKRLEIMVRTNDGFEIAEADLKLRGPG 629 Query: 632 EILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKHILTQDPD 672 ++ G +QSG+ L IA LL+ R+ A+ ++ DP+ Sbjct: 630 DLEGTQQSGIAFDLKIADVVRDGQLLQYVREVAQKVIDVDPN 671 >gi|319899972|ref|YP_004159700.1| ATP-dependent DNA helicase RecG [Bacteroides helcogenes P 36-108] gi|319415003|gb|ADV42114.1| ATP-dependent DNA helicase RecG [Bacteroides helcogenes P 36-108] Length = 698 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 237/666 (35%), Positives = 377/666 (56%), Gaps = 21/666 (3%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + + L+K + + + DLL+Y P ++DR I EI + + G I Sbjct: 14 GVGPQRASVLNKELGIYSLH-----DLLYYFPYKYVDRSRIYHIQEIDGTMPYIQLKGEI 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 + ++R +DGTG + L++F + + L + + V GK RI Sbjct: 69 LHFETVGEGRQRRLIAHFSDGTGMVDLVWF-QGIKYLLGQYKVHQDYVVFGKPTAFNGRI 127 Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLP-----TGLSVDLFKKIIVEALSRL-PVLPEWIE 190 + HP + ++ ++ Y+ + L+ +K++ + +L +PE + Sbjct: 128 NIAHPDIDPVSELKLSTMGMQPYYNTTAKMKRSSLNSHAIEKMMSTVIQQLREPIPETLS 187 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 +L + S+ +A IH P + E A+ RL ++EL Q+ +L K +++ Sbjct: 188 PAILNEHHLMSLTDALTNIHFPVNS---ELLRKAQYRLKFEELFYVQLNILRYAKDRQRK 244 Query: 251 I-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 G G+I RN+PF T +Q+ +K+I +D+ +M R+LQGDVGSGKTL Sbjct: 245 YRGYIFEKVGEIFNSFYSRNLPFELTNAQKRVLKEIRRDVGSGKQMNRLLQGDVGSGKTL 304 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VAL++M A++ G QA +MAP ILA QHYE I + + + VE++TG++ R L Sbjct: 305 VALMSMLIALDNGFQACMMAPTEILANQHYETICELLYDMDVRVELLTGSVKGKRRETIL 364 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAPHVLLMT 427 + G HI+IGTHA+ +D + + L LV++DEQHRFGV QR +L T+ PHVL+MT Sbjct: 365 ADLLTGDVHILIGTHAVIEDKVNFASLGLVVIDEQHRFGVAQRARLWTKSIQPPHVLVMT 424 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T GD+D+S I E P GRKPI T+ NR + + ++ ++EG++ Y Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATIHQFDNRKESLYRSVRKQIAEGRQVYI 484 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 + P I+E ++ + +++ E + + E F + +HG+M +K++ M F +G ++++ Sbjct: 485 VYPLIKESEKIDLKNLEEGYLHICEEFPDCKVCKVHGKMKPAEKDAQMQLFVSGEAQIMV 544 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S CIL+ L++++ Sbjct: 545 ATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCILVTGYKLAEDTRK 604 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKH 665 RL ++ T DGF IAE DLK R G++ G +QSG+ L IA LL+ R+ A+ Sbjct: 605 RLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLLQYVREIAQK 664 Query: 666 ILTQDP 671 ++ DP Sbjct: 665 VIDADP 670 >gi|313124079|ref|YP_004034338.1| ATP-dependent DNA helicase recg [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280642|gb|ADQ61361.1| ATP-dependent DNA helicase RecG [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 679 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 229/673 (34%), Positives = 368/673 (54%), Gaps = 26/673 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 +F P++ +GVG K + L + DLLFY P + + P + ++ + + Sbjct: 7 IFRPVTALKGVGAKTAEALQSL------GIYSIYDLLFYFPYRYDELENLP-LDQLEDGQ 59 Query: 69 IVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124 V + G ++ + + F K R +K+ ++ +I ++ F+ + + K + G++I Sbjct: 60 KVMLKGIVATNPYQNYFGYHKSRVSFKLRIDH---DIIMVNFFNQPWLTKQLSV-GQEIA 115 Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LP 183 V GK L+ + + + NS D P +YS+ + + +I A++ + Sbjct: 116 VYGKYD-LRKQSLSAYKLLANKNSDDGMAP----IYSVNRQIKQKKLQTMIDLAIAESMD 170 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 + + +DL + + + +H+P KD AR + E Q+ L LM Sbjct: 171 EIGNAVPEDLRKHYRLMADQDLVIAMHHP---KDLTEAKEARRSAVFREFFLFQMQLALM 227 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 Q K G + + + K+ +++PF+ + Q+ I +I DM +M R+LQGDVG Sbjct: 228 SSQNKSHSGYAKHYDLEEIGKLTKSLPFALSPDQKKVINEIFADMFVDQQMQRLLQGDVG 287 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA+ A+ AV AG QA +M P ILA QHY I ++ + V ++TG+ Sbjct: 288 SGKTVVAVFAIYGAVTAGYQAALMVPTEILANQHYHKISAMLEDFGVRVALLTGSTKTME 347 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ + +A G +++IGTHAL Q+ + + KL LVI+DEQHRFGV QRL L K P + Sbjct: 348 RREIYKELADGSINVVIGTHALIQEQVAFKKLGLVIIDEQHRFGVVQRLALINKGDRPDI 407 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPR+L LT GD +S+I PAGRKPIK+ +++DEV ++ L+EG Sbjct: 408 LAMTATPIPRSLALTVYGDTALSEIRHLPAGRKPIKSYWKTSSQLDEVYSLMRQQLAEGF 467 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTC 542 + Y + P I E + + + + L F + ++HG+M DKE +MD F G Sbjct: 468 QIYAVTPLISESETIDLENAEALHDRLAGEFPDQEVVLLHGKMGAADKEQIMDRFAAGEV 527 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 +L+ T+VIEVG+DV +A++++I +A+ FGL+QLHQLRGR+GRG+ S C+ L P ++ Sbjct: 528 DILVTTSVIEVGVDVANANLMVIFDADRFGLSQLHQLRGRIGRGQTQSYCVFLADPK-TE 586 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662 R+ ++ T DGF +AEEDLK R EG++ G QSG+P+F ++ +AR + Sbjct: 587 AGKQRMKIVAETNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRTGSVVSDYQVMVVARDE 646 Query: 663 AKHILTQDPDLTS 675 AK I+ DPDL + Sbjct: 647 AKRIVQADPDLKA 659 >gi|206976738|ref|ZP_03237642.1| ATP-dependent DNA helicase RecG [Bacillus cereus H3081.97] gi|229197966|ref|ZP_04324680.1| ATP-dependent DNA helicase recG [Bacillus cereus m1293] gi|206745048|gb|EDZ56451.1| ATP-dependent DNA helicase RecG [Bacillus cereus H3081.97] gi|228585445|gb|EEK43549.1| ATP-dependent DNA helicase recG [Bacillus cereus m1293] Length = 682 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 230/663 (34%), Positives = 377/663 (56%), Gaps = 33/663 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G + S L ++ ++ LL + P + D + ++E+ + VT Sbjct: 8 PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G + Q ++ ++ + G IT + F R K +T+TGK Sbjct: 61 VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRP--YYKQKLNLDETVTITGKW 118 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184 + + I + H+ V +E VYS+ L+V ++ I +AL S + V Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LP+ + L + K P EA +H P +D + AR R Y+E Q+ + +R Sbjct: 175 LPDGL---LSRYKLLPRY-EALRALHFPTGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227 Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 K + + G + + Q+ + +PF T +Q + +I++DM+ RM R+LQGDVG Sbjct: 228 KMERENSKGTKKEIPSEELQEFIDALPFPLTGAQRRVVDEIMKDMTSPYRMNRLLQGDVG 287 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA I + AA A Q +M P ILA+QHY+ + + + + VE++T ++ Sbjct: 288 SGKTVVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGVR 347 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L ++ G+ I++GTHAL QD + +++L LVI DEQHRFGV QR L +K +P V Sbjct: 348 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D V+ ++ + +G+ Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541 +AY ICP IEE ++ + ++ ++ + L H+ + ++HGR+S +KE +M F Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+ P S Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660 + R+ ++ T DGF+++E+DL+ R G+ G KQSG+P+F +A +HD LE AR Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645 Query: 661 KDA 663 +DA Sbjct: 646 QDA 648 >gi|71898961|ref|ZP_00681127.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa Ann-1] gi|71731207|gb|EAO33272.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa Ann-1] Length = 718 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 232/616 (37%), Positives = 353/616 (57%), Gaps = 39/616 (6%) Query: 92 ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQD 150 +L +D +T+ FF+ + + F G ++ G K + +VHP Y IF + Sbjct: 92 VLSDDAHHRLTMRFFHFRAAQIAR-FTVGTRVRAYGVPKLGQYGWEIVHPSYRIFAPGEA 150 Query: 151 VNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLP------VLPEWIEKDLLQKKSFPSIA 203 V+ ++ VY + G+ + +++I EAL LP +LP+ DL P++ Sbjct: 151 VSLNDCLDPVYPVIDGVGPAIVRQLIREALEHLPTDAALELLPDVWLSDL----GLPTLR 206 Query: 204 EAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259 A I+H P D T PA++RL+ +ELLA Q++L R ++ P+ +G Sbjct: 207 TALLIMHRPPLDADIARLMVGTHPAQQRLSLEELLAHQLSLRRQRIALQRH-SAPVLPDG 265 Query: 260 K-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318 + +L +PF T +Q+ I D+++ MLR++QGDVGSGKT+VA +A AV Sbjct: 266 AALVASLLHALPFHLTAAQQRVFAQIAADVAKPVPMLRLVQGDVGSGKTVVAALAALLAV 325 Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378 E Q + AP +LA+QH+ ++ + + + V + + R +AL +A G A + Sbjct: 326 EQNKQVALAAPTALLAEQHFINLRDWLEPLGVRVYWLAAKVTGKARLQALNDVASGDAQV 385 Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATA---PHVLLMTATPIPRT 434 ++GTHAL Q+S+ ++ L L IVDEQHRFGV QRL L K ATA PH L+MTATPIPRT Sbjct: 386 VVGTHALMQESVVFHDLALTIVDEQHRFGVHQRLLLRDKGATAGIVPHQLVMTATPIPRT 445 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L + + D+D+S I E P GR P++T ++ R E++ER+++ ++G++ YW+C I+E Sbjct: 446 LAMAAYADLDVSVIDEMPPGRTPVQTNVLSAERRPELVERIRLACAQGRQVYWVCTLIDE 505 Query: 495 KK--------ESN---FRSVVERFNSLHEHFTSS-----IAIIHGRMSDIDKESVMDSFK 538 + SN RS V+ + +E ++ + ++HGRM +K+ M +FK Sbjct: 506 SQTEAEQAPHSSNDIGHRSEVQAAQATYEALSAQLPGVRVGLVHGRMKAAEKQRTMRAFK 565 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 +L+ATTVIEVG+DV +AS++IIENAE GLAQLHQLRGRVGRG +SSC+LLY P Sbjct: 566 CNEIDVLVATTVIEVGVDVPNASLMIIENAERLGLAQLHQLRGRVGRGSVVSSCVLLYQP 625 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 PLS + RL +++ T DGF IAE+DL+ R GE+LG +Q+G+ F +A LL Sbjct: 626 PLSMLARQRLQIMRQTNDGFAIAEKDLELRGPGELLGTRQTGLAAFRVADLARDAHLLPR 685 Query: 659 ARKDAKHILTQDPDLT 674 A +L + P L Sbjct: 686 VYSLANTLLDESPQLA 701 >gi|330684637|gb|EGG96342.1| ATP-dependent DNA helicase RecG [Staphylococcus epidermidis VCU121] Length = 682 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 224/661 (33%), Positives = 378/661 (57%), Gaps = 22/661 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+ +G+G K L ++ N N DL+ Y P+ + D ++E ++ VT Sbjct: 12 PLNQIKGIGPKRLAVLQEL----NINTVE--DLILYLPTRYEDNTV-IDLNEAEDQSTVT 64 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITL-LFFYRKTEMLKNVFFEGRKITVTGKIK 130 + G + + R K+ ++ +I + F+ + + K + G +TV GK Sbjct: 65 VQGEVYSSPTVAFFGRNKSKLTVHIMVNQIAVKCVFFNQPYLKKKIELHG-TVTVKGKWN 123 Query: 131 KLKNRIIMVHPHYIFHNSQD-VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + K I + + +F N QD +N +E VY + G+ + I ++L+ + V+ EW+ Sbjct: 124 RSKQEI---NGNRMFFNQQDNLNDTQLEPVYRIKEGIKQKQLRDHIRQSLNDV-VIHEWL 179 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFK 248 +L K ++ N +H+P+ +D AR A+ EL ++ + L R + Sbjct: 180 SDELRNKYKLETLEFTLNHLHHPQGKQDL---LRARRTYAFTELFMFELRMQWLNRLEKA 236 Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 + I I + + + + ++PF T +Q++++ +I +D+ RM R+LQGDVGSGKT+ Sbjct: 237 SDDAIEIEYDIQKVKAFIDSLPFELTDAQKTSVNEIFRDLKAPIRMHRLLQGDVGSGKTV 296 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VA I M A AG Q+ +M P ILA+QH E + + +T + V ++TG++ RR L Sbjct: 297 VAAICMYALKTAGYQSALMVPTEILAEQHAESLIQLFGDT-MNVALLTGSVKGKKRRILL 355 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428 E++ +G +IGTHAL QD + + + LVI DEQHRFGV QR +L +K +VL MTA Sbjct: 356 EQLENGTIDCLIGTHALIQDDVTFDNVGLVITDEQHRFGVNQRQRLREKGAMTNVLFMTA 415 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488 TPIPRTL ++ G++D+S I + P GRKPI T + ++V+ ++ L +G++AY I Sbjct: 416 TPIPRTLAISVFGEMDVSSIKQLPKGRKPIITSWAKHEQYEQVLTQMTNELKKGRQAYVI 475 Query: 489 CPQIEEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 CP IE + + ++VVE F SL +++ + + ++HG++S+ +K+ VM F +L+ Sbjct: 476 CPLIESSEHLEDVQNVVELFESLQQYYGENKVGLLHGKLSNEEKDEVMHRFSEHEIDILV 535 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 +TTV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E S C+L+ P ++ Sbjct: 536 STTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIE 594 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666 R++++ T DGF ++E DL+ R G+ G+KQSG+P FL+A +LE+AR +A + Sbjct: 595 RMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANIVEDYRMLEVARDEAGEL 654 Query: 667 L 667 + Sbjct: 655 I 655 >gi|126664109|ref|ZP_01735102.1| ATP-dependent DNA helicase [Flavobacteria bacterium BAL38] gi|126623823|gb|EAZ94518.1| ATP-dependent DNA helicase [Flavobacteria bacterium BAL38] Length = 706 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 257/695 (36%), Positives = 387/695 (55%), Gaps = 50/695 (7%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 LN L P+ +GVG + L K + ++ DLL P+ +IDR KI+E+ Sbjct: 3 LNLLETPIEYLKGVGPQRGDLLRKELGI-----HKYADLLNLFPNRYIDRTRYYKINELQ 57 Query: 66 EERI-VTITGYISQHSSFQLQKRRPYKI-LLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123 V I G I + + K R + D TG++ L++F + + +++ KI Sbjct: 58 NSNSEVQIVGKIINIKTVEQGKGRSRLVATFIDDTGQMELVWFQGQKWIRESI-----KI 112 Query: 124 TVT----GKIKKLKNRIIMVHPHYIFHNSQDVNF-----PLIEAVYSLPT-GLSVDLFKK 173 V GK+ + M HP + P+ + L G+S + K Sbjct: 113 NVPYVIFGKVTQFGATYNMAHPEMELLEEHKTSLRSAMQPVYPSTEKLANKGISNKVINK 172 Query: 174 IIVEALSRLPVL-----PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERL 228 ++ + VL P ++ +L K P A FNI H P K++D + A+ RL Sbjct: 173 MMQQLFVETQVLFSENLPNYLLDEL---KLIPKNAALFNI-HFP-KSQDL--LAKAQFRL 225 Query: 229 AYDELLAGQIALL---LMRKQFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDI 284 ++EL Q+ L+ L+RK K G+P G+ +N +PF T +Q+ +K+I Sbjct: 226 KFEELFFIQLQLITKNLIRKHKIK--GMPFEKVGENFNNFYKNHLPFDLTNAQKRVLKEI 283 Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY----EF 340 D+ +M R+LQGDVGSGKT+VAL+ M A + G Q+ +MAP ILA QH+ E Sbjct: 284 RNDLGSNAQMNRLLQGDVGSGKTIVALMCMLLAKDNGFQSCLMAPTEILANQHFNGLSEL 343 Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400 + T I ++I+TG+ A R+ E + +G IIIGTHAL +D +Q+ L L I+ Sbjct: 344 LNPETSGLNISIKILTGSTKTAERKIIHEALENGTLDIIIGTHALLEDKVQFQNLGLAII 403 Query: 401 DEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 DEQHRFGV+QR KL KA+ PHVL+MTATPIPRTL ++ GD+DIS I E P GRKPI+ Sbjct: 404 DEQHRFGVEQRSKLWGKASIPPHVLVMTATPIPRTLAMSLYGDLDISVIDELPPGRKPIQ 463 Query: 460 TV-IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---T 515 TV NR+ +V + LK +++G++ Y + P I+E ++ +++ +++ + S+ F Sbjct: 464 TVHRYDSNRL-KVWKFLKDEIAKGRQVYIVYPLIQESEKMDYKDLMDGYESISRDFPLPQ 522 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 SI+I++G+M DK+ M F G +++ATTVIEVG++V +AS+++IE+AE FGL+Q Sbjct: 523 YSISIVYGKMKPADKDEEMRRFSEGKTNIMVATTVIEVGVNVPNASVMVIESAERFGLSQ 582 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG E S CIL+ LS +S R+ + T DGF I+E DLK R G+I+G Sbjct: 583 LHQLRGRVGRGAEQSYCILMTSHKLSNDSKIRMETMVRTNDGFEISEVDLKLRGPGDIMG 642 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670 +QSG+ IA +L++AR A +L +D Sbjct: 643 KQQSGVLNLQIADLVKDKDILQLARHHAIKLLKED 677 >gi|34540181|ref|NP_904660.1| ATP-dependent DNA helicase RecG [Porphyromonas gingivalis W83] gi|34396493|gb|AAQ65559.1| ATP-dependent DNA helicase RecG [Porphyromonas gingivalis W83] Length = 698 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 240/681 (35%), Positives = 378/681 (55%), Gaps = 22/681 (3%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI- 64 ++ L ++ GVG K + L + I ++DLL Y P ++DR I EI Sbjct: 1 MDILSTKITYLTGVGPKRAEVLKEEIEVRT-----YLDLLHYFPFRYVDRSRFYAIREIR 55 Query: 65 SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124 S+ + + G + S +R+ +DGTG I L++F + + +++ EGR+ Sbjct: 56 SDMPYIQLRGVLRNFSEVGEGRRKRLTATFSDGTGSIELVWF-KGIKYIRDKLQEGRRYI 114 Query: 125 VTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL- 182 V GK + + HP ++ V L ++ S+ L K + + L L Sbjct: 115 VFGKPVFFASGYNIAHPEIDAEEKAEQVAGGLTPIYHTTERMKSMGLGSKQLQQLLYVLL 174 Query: 183 ----PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L E + +L F S EA IH P+ E AR RL ++EL Q+ Sbjct: 175 NQVSATLTETLPPYILSSYGFVSYQEAIRQIHFPQGVAQLE---AARTRLKFEELFYVQL 231 Query: 239 ALLLMRKQFKKEI-GIPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKNRMLR 296 L+ + + K GI G + + ++PF T +Q+ I++I QD ++M R Sbjct: 232 HLIGSKLERKARFQGIVFAQVGALFNTFYKEHLPFELTGAQKRVIREIRQDTLSGHQMNR 291 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 ++QGDVGSGKTLVAL++M A++ G QA +MAP ILA+QH+ + + + I V ++ Sbjct: 292 LVQGDVGSGKTLVALLSMLLALDNGCQACLMAPTEILARQHHHTLSELLRPLGIEVGLLI 351 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G+ R + L R+A G I++GTHAL + + + +L + ++DEQHRFGVQQR +L + Sbjct: 352 GSCTARQRERLLPRLADGSLSIVVGTHALLEQGVAFRRLGMAVIDEQHRFGVQQRARLWE 411 Query: 417 KA--TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 K T PH+L+M+ATPIPRTL +T GD+DIS I E P GRKPI+T+ N + V Sbjct: 412 KNLDTLPHILIMSATPIPRTLAMTLYGDLDISIIDELPPGRKPIQTLHHFDNDMAPVFRF 471 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESV 533 L+ L+ G++ Y + P IE + ++ +++ + F F + ++HG+M +KE+ Sbjct: 472 LRSQLAAGRQVYVVYPMIEGSETTDLKNLEDGFELFSSIFPDEGVTMVHGKMKAKEKEAR 531 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M F +G ++L+ATTVIEVG++V +A+++++ENA+ FGL+QLHQLRGRVGRG E S CI Sbjct: 532 MADFVSGRSRILLATTVIEVGVNVPNATVMVVENADRFGLSQLHQLRGRVGRGGEQSYCI 591 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELH 652 L+ ++S R+ V+ T DGF IAEED++ R G++ G +QSG L IA P Sbjct: 592 LITGTKTGEDSRRRIQVMVETNDGFEIAEEDMRLRGFGDLEGTRQSGRQISLRIANPARD 651 Query: 653 DSLLEIARKDAKHILTQDPDL 673 L+ ++R A+ +L +DP+L Sbjct: 652 TELIALSRSIAEQLLERDPEL 672 >gi|218899008|ref|YP_002447419.1| ATP-dependent DNA helicase RecG [Bacillus cereus G9842] gi|218545708|gb|ACK98102.1| ATP-dependent DNA helicase RecG [Bacillus cereus G9842] Length = 682 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 232/663 (34%), Positives = 377/663 (56%), Gaps = 33/663 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G + S L ++ ++ LL + P + D + ++E+ + VT Sbjct: 8 PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G + Q ++ ++ + G IT + F R K E +T+TGK Sbjct: 61 VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLTLDE--TVTITGKW 118 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184 + + I + H+ V +E VYS+ L+V ++ I +AL S + V Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LP+ + L + K P EA +H P +D + AR R Y+E Q+ + +R Sbjct: 175 LPDGL---LGRYKLLPRY-EALKALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227 Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 K + + G + Q+ + +PF T +Q + +IL+DM+ RM R+LQGDVG Sbjct: 228 KMERENSKGTKKEIPSVELQEFIDALPFPLTGAQRRVVDEILKDMTSPYRMNRLLQGDVG 287 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA I + A+ A Q +M P ILA+QHY+ + + + + VE++T ++ A Sbjct: 288 SGKTVVAAIGLYASKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGAR 347 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR L ++ G+ I++GTHAL QD + +++L LVI DEQHRFGV QR L +K +P V Sbjct: 348 RRDILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D V+ ++ + +G+ Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541 +AY ICP IEE ++ + ++ ++ + L H+ + ++HGR+S +KE +M F Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+ P S Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660 + R+ ++ T DGF+++E+DL+ R G+ G KQSG+P+F +A +HD LE AR Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645 Query: 661 KDA 663 +DA Sbjct: 646 QDA 648 >gi|228909680|ref|ZP_04073503.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis IBL 200] gi|228849969|gb|EEM94800.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis IBL 200] Length = 682 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 232/663 (34%), Positives = 378/663 (57%), Gaps = 33/663 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G + S L ++ ++ LL + P + D + ++E+ + VT Sbjct: 8 PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G + Q ++ ++ + G IT + F R K E +T+TGK Sbjct: 61 VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLTLDE--TVTITGKW 118 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184 + + I + H+ V +E VYS+ L+V ++ I +AL S + V Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LP+ + L + K P EA +H P +D + AR R Y+E Q+ + +R Sbjct: 175 LPDGL---LGRYKLLPRY-EALRALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227 Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 K + + G + Q+ + +PF T +Q + +IL+DM+ RM R+LQGDVG Sbjct: 228 KMERENSKGTKKEIPSVELQEFIDALPFPLTGAQRRVVNEILKDMTSPYRMNRLLQGDVG 287 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA I + A+ A Q +M P ILA+QHY+ + + + + VE++T ++ A Sbjct: 288 SGKTVVAAIGLYASKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGAR 347 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L ++ G+ I++GTHAL QD + +++L LVI DEQHRFGV QR L +K +P V Sbjct: 348 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D V+ ++ + +G+ Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541 +AY ICP IEE ++ + ++ ++ + L H+ + ++HGR+S +KE +M F Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+ P S Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660 + R+ ++ T DGF+++E+DL+ R G+ G KQSG+P+F +A +HD LE AR Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645 Query: 661 KDA 663 +DA Sbjct: 646 QDA 648 >gi|228954132|ref|ZP_04116160.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805452|gb|EEM52043.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 682 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 233/663 (35%), Positives = 378/663 (57%), Gaps = 33/663 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G + S L ++ ++ LL + P + D + ++E+ + VT Sbjct: 8 PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G I Q ++ ++ + G IT + F R K E +T+TGK Sbjct: 61 VEGKIHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLKLDE--TVTITGKW 118 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184 + + I + H+ V +E VYS+ L+V ++ I +AL S + V Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LP+ + L + K P EA +H P +D + AR R Y+E Q+ + +R Sbjct: 175 LPDGL---LGRYKLLPRY-EALRALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227 Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 K + + G + Q+ + +PF T +Q + +IL+DM+ RM R+LQGDVG Sbjct: 228 KMERENSKGTKKEIPSVELQEFIDALPFPLTGAQHRVVDEILKDMTSPYRMNRLLQGDVG 287 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA I + A+ A Q +M P ILA+QHY+ + + + + VE++T ++ A Sbjct: 288 SGKTVVAAIGLYASKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGAR 347 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L ++ G+ I++GTHAL QD + +++L LVI DEQHRFGV QR L +K +P V Sbjct: 348 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D V+ ++ + +G+ Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541 +AY ICP IEE ++ + ++ ++ + L H+ + ++HGR+S +KE +M F Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+ P S Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660 + R+ ++ T DGF+++E+DL+ R G+ G KQSG+P+F +A +HD LE AR Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645 Query: 661 KDA 663 +DA Sbjct: 646 QDA 648 >gi|229180131|ref|ZP_04307475.1| ATP-dependent DNA helicase recG [Bacillus cereus 172560W] gi|228603340|gb|EEK60817.1| ATP-dependent DNA helicase recG [Bacillus cereus 172560W] Length = 682 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 233/663 (35%), Positives = 379/663 (57%), Gaps = 33/663 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G + S L ++ ++ LL + P + D + ++E+ + VT Sbjct: 8 PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G I Q ++ ++ + G IT + F R K E +T+TGK Sbjct: 61 VEGKIHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLKLDE--TVTITGKW 118 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184 + + I + H+ V +E VYS+ L+V ++ I +AL S + V Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LP+ + L + K P EA +H P +D + AR R Y+E Q+ + +R Sbjct: 175 LPDGL---LGRYKLLPRY-EALRALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227 Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 K + + G + Q+ + +PF T +Q + +IL+DM+ RM R+LQGDVG Sbjct: 228 KMERENSKGTKKEIPSVELQEFIDALPFPLTGAQRRVVDEILKDMTSPYRMNRLLQGDVG 287 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA I++ A+ A Q +M P ILA+QHY+ + + + + VE++T ++ A Sbjct: 288 SGKTVVAAISLYASKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGAR 347 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L ++ G+ I++GTHAL QD + +++L LVI DEQHRFGV QR L +K +P V Sbjct: 348 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D V+ ++ + +G+ Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541 +AY ICP IEE ++ + ++ ++ + L H+ + ++HGR+S +KE +M F Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+ P S Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660 + R+ ++ T DGF+++E+DL+ R G+ G KQSG+P+F +A +HD LE AR Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645 Query: 661 KDA 663 +DA Sbjct: 646 QDA 648 >gi|206971157|ref|ZP_03232108.1| ATP-dependent DNA helicase RecG [Bacillus cereus AH1134] gi|206733929|gb|EDZ51100.1| ATP-dependent DNA helicase RecG [Bacillus cereus AH1134] Length = 682 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 233/663 (35%), Positives = 378/663 (57%), Gaps = 33/663 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G + S L ++ ++ LL + P + D + ++E+ + VT Sbjct: 8 PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G I Q ++ ++ + G IT + F R K E +T+TGK Sbjct: 61 VEGKIHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLKLDE--TVTITGKW 118 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184 + + I + H+ V +E VYS+ L+V ++ I +AL S + V Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LP+ + L + K P EA +H P +D + AR R Y+E Q+ + +R Sbjct: 175 LPDGL---LGRYKLLPRY-EALRALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227 Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 K + + G + Q+ + +PF T +Q + +IL+DM+ RM R+LQGDVG Sbjct: 228 KMERENSKGTKKEIPSVELQEFIDALPFPLTGAQRRVVDEILKDMTSPYRMNRLLQGDVG 287 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA I + A+ A Q +M P ILA+QHY+ + + + + VE++T ++ A Sbjct: 288 SGKTVVAAIGLYASKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGAR 347 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L ++ G+ I++GTHAL QD + +++L LVI DEQHRFGV QR L +K +P V Sbjct: 348 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D V+ ++ + +G+ Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKRDMLDRVLGFVEKEIKKGR 467 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541 +AY ICP IEE ++ + ++ ++ + L H+ + ++HGR+S +KE +M F Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+ P S Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660 + R+ ++ T DGF+++E+DL+ R G+ G KQSG+P+F +A +HD LE AR Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645 Query: 661 KDA 663 +DA Sbjct: 646 QDA 648 >gi|255038637|ref|YP_003089258.1| ATP-dependent DNA helicase RecG [Dyadobacter fermentans DSM 18053] gi|254951393|gb|ACT96093.1| ATP-dependent DNA helicase RecG [Dyadobacter fermentans DSM 18053] Length = 706 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 239/682 (35%), Positives = 370/682 (54%), Gaps = 28/682 (4%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT-ITG 74 +GVG + + L++ ++ F DL+ ++P DR K+S+++E+ + G Sbjct: 21 LKGVGPQKAALLNQELSIFT-----FGDLIQHYPFRHEDRSVFHKLSDLNEQMTAAQVKG 75 Query: 75 YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134 + + S ++ DGTG + L++F + + G + V G Sbjct: 76 RLREFSVIGEGSKKRLVGTFQDGTGFLDLVWF-QSISWYEKWLRRGGEYIVYGTPVLYGG 134 Query: 135 RIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEW 188 + + HP ++ + + +Y L L + + R + + E Sbjct: 135 KWSITHPEIEVLTPENASAGYWQPIYPLTEKLRKKFLDSKALSKMMRNLLEIAHTHIRET 194 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248 + L++K S A+A H P+ + A+ RL ++EL Q L+ + K Sbjct: 195 LPAPLVEKYRLVSKAQALWHFHLPQDNRTLH---QAQRRLKFEELFYNQFRLIKNKLLHK 251 Query: 249 KEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 E G+ + + + +++PF T +Q + +I +D+ +M R+LQGDVGSGKT Sbjct: 252 TEYPGLIFDKTLLVKEFYEQHLPFKLTGAQIRVLHEIHEDLKTGKQMNRLLQGDVGSGKT 311 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +VA I M A++ QA +MAP IL QHY+ +KK+ + + +TG+ + R Sbjct: 312 IVAFITMLFALDNDAQACLMAPTEILTDQHYQGLKKFADLLGVNIAKLTGSTKKKEREVI 371 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL--TQKATAPHVLL 425 + +G HII+GTHAL +D++Q+ L L I+DEQHRFGV QR KL K PH+L+ Sbjct: 372 HRELLNGTLHIIVGTHALIEDAVQFKNLGLCIIDEQHRFGVAQRAKLWAKNKRINPHMLV 431 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID----EVIERLKVVLSE 481 MTATPIPRTL +T GD+DIS I E PAGRKPIKTV +R D +V LK +++ Sbjct: 432 MTATPIPRTLAMTLYGDLDISAINELPAGRKPIKTV----HRFDKNRLQVFGFLKEEIAK 487 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540 G++ Y + P IEE ++ + + +++ + S+ F ++I+HG+M DK+ M F G Sbjct: 488 GRQVYMVYPLIEESEKMDLKDLMDGYESVARAFPGVPLSIVHGKMRSQDKDFEMGRFVRG 547 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 K+++ATTVIEVG++V +AS+++IENAE FGL+QLHQLRGRVGRG E S CIL+ L Sbjct: 548 ETKIMVATTVIEVGVNVPNASVMVIENAERFGLSQLHQLRGRVGRGAEQSYCILMTDYKL 607 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 SK++ R+ + T DGF IAE DL+ R G+I G +QSG+ L+A +L+ AR Sbjct: 608 SKDTKLRIETMCRTNDGFEIAEVDLQLRGPGDISGTQQSGLVDLLVANLAQDGEILKAAR 667 Query: 661 KDAKHILTQDPDLTSVRGQSIR 682 A+ ILT DPDL Q IR Sbjct: 668 ASAEEILTTDPDLLQPVHQPIR 689 >gi|27262498|gb|AAN87530.1| ATP-dependent DNA helicase recG [Heliobacillus mobilis] Length = 807 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 239/670 (35%), Positives = 375/670 (55%), Gaps = 31/670 (4%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75 RGVG + + L ++ ET DLLF+ P +IDR I++I ++G Sbjct: 135 LRGVGPQRAAALKRL-----GIET-IQDLLFHLPHRYIDRSQLLSIAQIRYPGDYNVSGV 188 Query: 76 ISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 I + Q RR ++ L+DGTG + ++ F RK L + G + V+GK++ Sbjct: 189 IRAYQ--QYNPRRGLAVIKGQLDDGTGILPIVLFNRK--QLTAKYPPGTAVIVSGKVE-F 243 Query: 133 KNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIE 190 + +H I + ++ ++ I VY GL+ + + + + + P + + + Sbjct: 244 RYGKAELHVEEIENQAEAGLHTNRIVPVYPATEGLNQRFLRGLYEQVIPKYAPQMNDIVP 303 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 K L + + P++++A +H P E R +LA++E Q A +R++ Sbjct: 304 KGLDRSTNLPALSQAVQWVHFP---DSLEQAELGRRKLAFNEAFLLQTAWQFIRRRRN-- 358 Query: 251 IGIPINVEG-KIAQ----KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 +PI G K AQ K+ +P+ T +Q+ +++I DM M R+LQGDVG+G Sbjct: 359 --VPIEGIGHKPAQEELNKLWSLLPYELTAAQKRVVREIAADMEANRPMNRLLQGDVGAG 416 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA A+ AV +G QA +MAP +LA+QH ++ I V ++G++ + + Sbjct: 417 KTIVAASAVVKAVASGYQAALMAPTEVLAEQHAISWQRLLAEMAIPVAHLSGSLTRRRKE 476 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + L+ ++ G +++GTHAL Q + + +L LV++DEQHRFGV+QR L +K +L+ Sbjct: 477 EVLKGLSEGTYPVVVGTHALLQKEVVFQRLGLVVIDEQHRFGVRQRAALWEKGQQADLLV 536 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T GD+D+S + E+P GR+ +KT + + V ++ +S+G +A Sbjct: 537 MTATPIPRTLAMTLYGDLDVSILNERPPGRQEVKTYHVGSDTWPRVYNLIRREVSQGHQA 596 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543 Y +CP IEE +E + +V ER+ +L + I+HGRM +K +VM+ F G K Sbjct: 597 YIVCPAIEESEEMDLAAVEERYGTLTRDVFPDLEVGILHGRMKKEEKAAVMERFYRGNTK 656 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L+ATTVIEVGIDV A++++IE AE FGLAQLHQLRGRVGRG+ S CIL+ LS Sbjct: 657 VLVATTVIEVGIDVPAATVMVIEGAERFGLAQLHQLRGRVGRGQAQSFCILIAD-KLSDE 715 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+S ++ T DGF +AEEDLK R GE LG +QSG+P F +A LL+ A+ + Sbjct: 716 GKRRMSAMEGTNDGFRLAEEDLKLRGPGEFLGTRQSGIPAFKVADLVKDADLLDQAKSAS 775 Query: 664 KHILTQDPDL 673 + QDP L Sbjct: 776 EQWNAQDPTL 785 >gi|229162791|ref|ZP_04290748.1| ATP-dependent DNA helicase recG [Bacillus cereus R309803] gi|228620673|gb|EEK77542.1| ATP-dependent DNA helicase recG [Bacillus cereus R309803] Length = 685 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 230/663 (34%), Positives = 375/663 (56%), Gaps = 33/663 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G + S L ++ ++ LL + P + D + ++E+ + VT Sbjct: 11 PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G + Q ++ ++ + G IT + F R K E +T+TGK Sbjct: 64 VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLKLDEA--VTITGKW 121 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184 + + I + H+ V +E VYS+ L+V ++ I +AL S + V Sbjct: 122 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 177 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LP+ LL + EA +H P +D + AR R Y+E Q+ + +R Sbjct: 178 LPD----GLLSRYKLLPRYEALRALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQTLR 230 Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 K + + G + Q+ + +PF T +Q + +I++DM+ RM R+LQGDVG Sbjct: 231 KMERENSKGTKKEIPSAELQEFIDTLPFPLTGAQRRVVDEIMKDMTSPYRMNRLLQGDVG 290 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA I + AA A Q +M P ILA+QHY+ + + + + VE++T ++ Sbjct: 291 SGKTVVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGVR 350 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L ++ G+ I++GTHAL QD + +++L LVI DEQHRFGV QR L +K +P V Sbjct: 351 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 410 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D V+ ++ + +G+ Sbjct: 411 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 470 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541 +AY ICP IEE ++ + ++ ++ + L H+ + ++HGR+S +KE +M F Sbjct: 471 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 530 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+ P S Sbjct: 531 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 589 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660 + R+ ++ T DGF+++E+DL+ R G+ G KQSG+P+F +A +HD LE AR Sbjct: 590 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 648 Query: 661 KDA 663 +DA Sbjct: 649 QDA 651 >gi|49478911|ref|YP_037916.1| ATP-dependent DNA helicase RecG [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330467|gb|AAT61113.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 657 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 224/631 (35%), Positives = 362/631 (57%), Gaps = 27/631 (4%) Query: 44 LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE--I 101 LL + P + D + ++E+ + VT+ G + Q ++ ++ + G I Sbjct: 9 LLEHFPYRYED-YAMKDLAEVKHDERVTVEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLI 67 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161 T + F R K +T+TGK + + I + H+ V +E VYS Sbjct: 68 TAVCFNRP--YYKQKLNLDETVTITGKWDQHRQTIAVSELHF----GPVVRQQEVEPVYS 121 Query: 162 LPTGLSVDLFKKIIVEAL-----SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216 + L+V ++ I +AL S + VLP+ LL + EA +H P + Sbjct: 122 VKGKLTVKQMRRFIAQALKEYGDSIVEVLPD----GLLSRYKLLPRYEALRALHFPTGQE 177 Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTK 275 D + AR R Y+E Q+ + +RK + + G + + Q+ + +PF T Sbjct: 178 DLK---QARRRFVYEEFFLFQLKMQTLRKMERENSKGTKKEIPSEELQEFIDALPFPLTG 234 Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 +Q + +I++DM+ RM R+LQGDVGSGKT+VA I + AA A Q +M P ILA+ Sbjct: 235 AQRRVVDEIMKDMTSPYRMNRLLQGDVGSGKTVVAAIGLYAAKLAHYQGALMVPTEILAE 294 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 QHY+ + + + + VE++T ++ RR+ L ++ G+ I++GTHAL QD + +++L Sbjct: 295 QHYQSLAETFSHFGMKVELLTSSVKGVRRREILAKLEQGEIDILVGTHALIQDEVIFHRL 354 Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 LVI DEQHRFGV QR L +K +P VL MTATPIPRTL +T+ G++D+S I E PAGR Sbjct: 355 GLVITDEQHRFGVAQRRVLREKGESPDVLFMTATPIPRTLAITAFGEMDVSIIDEMPAGR 414 Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 K I+T + +D V+ ++ +++G++AY ICP IEE ++ + ++ ++ + L H+ Sbjct: 415 KVIETYWAKHDMLDRVLGFVEKEINKGRQAYVICPLIEESEKLDVQNAIDLHSMLTHHYQ 474 Query: 516 S--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 + ++HGR+S +KE +M F ++L++TTV+EVG++V +A++++I +AE FGL Sbjct: 475 GKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERFGL 534 Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633 +QLHQLRGRVGRG E S C+L+ P S+ R+ ++ T DGF+++E+DL+ R G+ Sbjct: 535 SQLHQLRGRVGRGSEQSYCLLIADPK-SETGKERMRIMTETNDGFVLSEKDLELRGPGDF 593 Query: 634 LGIKQSGMPKFLIAQPELHD-SLLEIARKDA 663 G KQSG+P+F +A +HD LE AR+DA Sbjct: 594 FGSKQSGLPEFKVADM-VHDYRALETARQDA 623 >gi|302386340|ref|YP_003822162.1| ATP-dependent DNA helicase RecG [Clostridium saccharolyticum WM1] gi|302196968|gb|ADL04539.1| ATP-dependent DNA helicase RecG [Clostridium saccharolyticum WM1] Length = 683 Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust. Identities = 234/682 (34%), Positives = 374/682 (54%), Gaps = 32/682 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEISEERIVT 71 +++ +G+G+K K+ DLL Y+P ++ D + P + E+ ++++T Sbjct: 6 INSLKGIGEKTGKLFQKV------GVITVEDLLEYYPRAY-DTYEEPSPLGELKPDQVMT 58 Query: 72 ITGY------ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 + G + ++S Q+ L D TG TLL + L G + Sbjct: 59 VAGMLYKTPDVKRYSHIQV-----ITTTLKDMTG--TLLLTWYNMPYLHTTLKAGMRAVF 111 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 G++ K R+ M P + + ++ VY GLS + +ALS ++ Sbjct: 112 RGRVVKKNGRLTMEQPEVFTAEAYEQVVHSMQPVYGQTKGLSNKTIVRAQRQALSLRSMV 171 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL--LLM 243 +++ DL +K A IH P + + AR+RL +DE +A+ L Sbjct: 172 RDYMPADLRRKHELAEYNFAMEHIHFPTDRSELLF---ARKRLVFDEFFLFLMAVRRLKE 228 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 R++ KK + +N+ ++ + + +++P+S TK+Q+ + +I D+S M R++QGDVG Sbjct: 229 RREDKKSAYV-LNLSQEV-ETLRKSLPYSLTKAQQKVLTEIYGDLSGGRVMNRLIQGDVG 286 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE--IITGNMPQ 361 SGKT++A++++ A G Q +MAP +LA+QH E + + I + ++TG+M Sbjct: 287 SGKTIIAILSLLQAAYNGYQGALMAPTEVLAKQHLESMTELFAAHHIDKKPILVTGSMTA 346 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 +R A E+IA +A IIIGTHAL QD + Y L LVI DEQHRFGV QR L +K P Sbjct: 347 KEKRIAYEKIASHEADIIIGTHALIQDKVIYDNLALVITDEQHRFGVGQRELLGKKGEEP 406 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 HVL+M+ATPIPRTL + GD+DIS I E PA R PIK ++ + E ++ + Sbjct: 407 HVLVMSATPIPRTLAIIIYGDLDISVIDELPANRLPIKNCVVDTGYRKKAYEFIRKEIGN 466 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540 G++AY ICP +E + + +V++ +L E ++ +HG+M +K +M+ F G Sbjct: 467 GRQAYVICPMVEASEMIDAENVLDYTKTLREALPGITVEYLHGKMKPKEKNGIMERFACG 526 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 K+L++TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG+ S CI++ Sbjct: 527 EIKVLVSTTVIEVGVNVPNATVMMIENAERFGLAQLHQLRGRVGRGKYQSYCIMVGASD- 585 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + + RL +L + DGF IA EDLK R G+I GI+QSG +F + +LL+ Sbjct: 586 QEGTKERLDILNQSNDGFFIASEDLKLRGPGDIFGIRQSGDLEFKLGDIFTDANLLKTVS 645 Query: 661 KDAKHILTQDPDLTSVRGQSIR 682 ++ K I T+DP+L Q ++ Sbjct: 646 EEVKRIFTEDPELEKEEHQELK 667 >gi|218233045|ref|YP_002368656.1| ATP-dependent DNA helicase RecG [Bacillus cereus B4264] gi|229071353|ref|ZP_04204576.1| ATP-dependent DNA helicase recG [Bacillus cereus F65185] gi|229081110|ref|ZP_04213620.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock4-2] gi|229192024|ref|ZP_04318994.1| ATP-dependent DNA helicase recG [Bacillus cereus ATCC 10876] gi|218161002|gb|ACK60994.1| ATP-dependent DNA helicase RecG [Bacillus cereus B4264] gi|228591575|gb|EEK49424.1| ATP-dependent DNA helicase recG [Bacillus cereus ATCC 10876] gi|228702154|gb|EEL54630.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock4-2] gi|228711807|gb|EEL63759.1| ATP-dependent DNA helicase recG [Bacillus cereus F65185] Length = 682 Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust. Identities = 233/663 (35%), Positives = 378/663 (57%), Gaps = 33/663 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G + S L ++ ++ LL + P + D + ++E+ + VT Sbjct: 8 PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G I Q ++ ++ + G IT + F R K E +T+TGK Sbjct: 61 VEGKIHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLKLDE--TVTITGKW 118 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184 + + I + H+ V +E VYS+ L+V ++ I +AL S + V Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LP+ + L + K P EA +H P +D + AR R Y+E Q+ + +R Sbjct: 175 LPDGL---LGRYKLLPRY-EALRALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227 Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 K + + G + Q+ + +PF T +Q + +IL+DM+ RM R+LQGDVG Sbjct: 228 KMERENSKGTKKEIPSVELQEFIDALPFPLTGAQRRVVDEILKDMTSPYRMNRLLQGDVG 287 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA I + A+ A Q +M P ILA+QHY+ + + + + VE++T ++ A Sbjct: 288 SGKTVVAAIGLYASKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGAR 347 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L ++ G+ I++GTHAL QD + +++L LVI DEQHRFGV QR L +K +P V Sbjct: 348 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D V+ ++ + +G+ Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541 +AY ICP IEE ++ + ++ ++ + L H+ + ++HGR+S +KE +M F Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+ P S Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660 + R+ ++ T DGF+++E+DL+ R G+ G KQSG+P+F +A +HD LE AR Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645 Query: 661 KDA 663 +DA Sbjct: 646 QDA 648 >gi|319745647|gb|EFV97947.1| DNA helicase RecG [Streptococcus agalactiae ATCC 13813] Length = 671 Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust. Identities = 242/669 (36%), Positives = 374/669 (55%), Gaps = 29/669 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L +P+S +G G K + K+ + DLL Y+P + D + + E+ Sbjct: 3 LQSPISNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEK 56 Query: 69 IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 V ITG + ++ Q KR L G + + FF + L + G+++ V Sbjct: 57 AV-ITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNISFFNQP--YLADKIELGQEVAVF 113 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA--LSRLPV 184 GK K+ I + + +D P VY + G+S K I A ++ Sbjct: 114 GKWDATKSAITGMK---VLAQVEDDMQP----VYRVAQGISQSTLIKAIKSAFEINAHLE 166 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 L E + LL+K + A +H P KD A R+ ++EL Q+ L +++ Sbjct: 167 LKENLPATLLEKYRLMGRSRACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVLK 223 Query: 245 KQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 + K E G+PI + + + ++PF T +Q+ ++ +IL DMS M R+LQGDVG Sbjct: 224 AENKSETNGLPILYSKRAMETKISSLPFILTNAQKRSLDEILSDMSSGAHMNRLLQGDVG 283 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT++A ++M AA AG Q+ +M P ILA+QHY +++ + I I+T M A Sbjct: 284 SGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELFPDLSI--AILTSGMKAAV 341 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 + L IA+G +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR +K P V Sbjct: 342 KLTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPDV 401 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL +T+ G++D+S I E PAGRKPI T + ++ V+E +K L + Sbjct: 402 LMMTATPIPRTLAITAFGEMDVSIIDELPAGRKPIITRWVKHEQLGTVLEWVKGELQKDA 461 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGT 541 + Y I P IEE + + ++ V L +F + +A++HGRM + +K+++M FK+ Sbjct: 462 QVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDKK 521 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S +L+ +P + Sbjct: 522 SHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGYKQSYAVLVANPK-T 580 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 + R++++ T DGF++AE DLK R GEI G +QSG+P+F +A +LE AR+ Sbjct: 581 DSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARR 640 Query: 662 DAKHILTQD 670 A I+ + Sbjct: 641 VASDIVKDN 649 >gi|149925181|ref|ZP_01913479.1| ATP-dependent DNA helicase RecG [Plesiocystis pacifica SIR-1] gi|149813951|gb|EDM73598.1| ATP-dependent DNA helicase RecG [Plesiocystis pacifica SIR-1] Length = 814 Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust. Identities = 239/661 (36%), Positives = 353/661 (53%), Gaps = 46/661 (6%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR-----RPYKILLNDG 97 DL + P + DR +SE+ E I G I R R ++ N Sbjct: 141 DLAYLLPLGYEDRRQTTLLSEVEEGASAVIHGVIRSFRQGWYSGRYSATMRIEQVQPNGA 200 Query: 98 TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-I 156 + +F+R M + V G ++ + G +K+ + ++ MVHP + D L I Sbjct: 201 HLGLEARWFHRVGGMSQRVT-TGEEVLLAGVVKRFRGKLSMVHPDIL-----DAQLGLGI 254 Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRL-----------PVLPEWIEKDLLQKKSFPSIAEA 205 Y + G+ ++ A+ RL P+ PE +E+ L + +A Sbjct: 255 ATRYPVVEGVGQRTLVRLCKAAVERLRAAREQGILHDPLPPELVERHQLIDQ-----LDA 309 Query: 206 FNIIHNPRKAKD-------FEWTSPARERLAYDELLAGQIALLLMRKQFKKE-IGIPINV 257 +H P + D +SPA RLA+DE Q+ALL R ++ +P Sbjct: 310 VAWLHEPPQDLDEVQLEALIRRSSPAHRRLAFDEFFFLQLALLRQRGTYRATPCALPPLA 369 Query: 258 EGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316 EG ++ LR +P+ PT +Q I DI D+S+ MLR+LQGDVGSGKT VA A A Sbjct: 370 EGSFDRERLRACLPWEPTGAQWRVIDDIEGDLSRHKPMLRLLQGDVGSGKTAVAFAAALA 429 Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376 ++AG QA IMAP ILA+QH ++ + + + + ++TG+ P+A R L + G+ Sbjct: 430 VIDAGAQAAIMAPTEILAEQHMRGMQVWCEKAGVRIALLTGSTPRAQRTSLLALLGAGEI 489 Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436 +++GTHAL +++ L LVIVDEQHRFGV+QR L K APH+L+MTATPIPR+L Sbjct: 490 DLLVGTHALLVGDVEFASLALVIVDEQHRFGVEQRGALRAKGEAPHLLVMTATPIPRSLA 549 Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE----GKKAYWICPQI 492 LT+ G++D+S I E P GR T + R + R + +L+E G KAY +CP + Sbjct: 550 LTAFGELDVSIIDELPPGRIAPTTQVFAGGR---SLGRARKLLAERVRAGDKAYVVCPLV 606 Query: 493 EEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551 E + V +L + +A++HGRM DK++VM+ F++G ++L+ATTVI Sbjct: 607 EASEAVAASDVEATAAALRKLLPKHEVAVVHGRMVSRDKDAVMERFRSGEVRVLVATTVI 666 Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611 EVG+DV DA I+IE+AE FGLAQLHQLRGRVGR S C+L + ++ RL VL Sbjct: 667 EVGVDVPDARAILIEHAERFGLAQLHQLRGRVGRSAGHSLCLLHTASDPASDAGKRLEVL 726 Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQD 670 + + DGF++AE DL+ R GE+ G +QSG+P+ A +L AR+ A I+ D Sbjct: 727 EGSGDGFVVAERDLELRGPGEVFGTRQSGVPRLRFASFSGEGMKMLIAAREAAMAIIEAD 786 Query: 671 P 671 P Sbjct: 787 P 787 >gi|167745671|ref|ZP_02417798.1| hypothetical protein ANACAC_00363 [Anaerostipes caccae DSM 14662] gi|167654983|gb|EDR99112.1| hypothetical protein ANACAC_00363 [Anaerostipes caccae DSM 14662] Length = 676 Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust. Identities = 210/582 (36%), Positives = 338/582 (58%), Gaps = 11/582 (1%) Query: 92 ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV 151 L D +G +T +F LK G G R++M HP Sbjct: 81 CLGRDSSGTMTFTWF--NMPYLKKQIHRGEDYIFVGTAVFKNGRLMMEHPEIFKEEDYSA 138 Query: 152 NFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHN 211 ++ VY L +G++ K +++ + + E++ + +L+K +EA +H Sbjct: 139 KQQTLQPVYPLTSGITNKTVSKAVMQTEEYIKGIREYLPEQILKKYRPMDYSEAIWNVHF 198 Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG-IPINVEGKIAQKILRNIP 270 PR D + A++RL +DE + LM+++ ++E PI V G+ A ++++++P Sbjct: 199 PR---DKQTLVEAKKRLIFDEFFIFMAGMNLMKQEHREEKNRYPIPVCGE-ADRLIQSLP 254 Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T +Q+ A+ ++ +D+ + M R++QGDVGSGKT++A+I + +AG Q V+MAP Sbjct: 255 YELTGAQKRALLEMQKDLMGEKVMNRLVQGDVGSGKTILAVILLLMCAKAGYQGVLMAPT 314 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA QHYE ++ + ++TG++ +R+ + I + + I+IGTHAL QD++ Sbjct: 315 EVLASQHYETFQELLGPFGVSAALLTGSVKAKEKREIYQGIKNHEYDIVIGTHALIQDAV 374 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 +Y +L LVI DEQHRFGV+QR L++K PHVL+M+ATPIPRTL + GD+D+S I E Sbjct: 375 EYDRLALVITDEQHRFGVRQREILSKKGKEPHVLVMSATPIPRTLAIIMYGDLDVSVIDE 434 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P R PIK ++ + ++ ++EG++ Y ICP +EE + +V++ N L Sbjct: 435 LPKNRLPIKNCVVNQSYRPNAYRFMEKQVAEGRQIYIICPMVEESEAMEGENVIQYANML 494 Query: 511 HEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 E F SI ++HG+M +K+ +MD F + ++L++TTVIEVG++V +A+++++ENA Sbjct: 495 REQFPPSIQIGVLHGKMKPKEKQKIMDEFSERSIQILVSTTVIEVGVNVPNATVMMVENA 554 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628 E FGLAQLHQLRGRVGRGE S CI + K + RL VL + DGF IA +DLK R Sbjct: 555 ERFGLAQLHQLRGRVGRGEHQSYCIFMSGVK-KKETMERLEVLNKSNDGFYIANQDLKLR 613 Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670 G+ G++QSGM F++A + LL+ A DA H L ++ Sbjct: 614 GPGDFFGVRQSGMMDFVLADIYTNADLLKQA-SDAVHQLCEE 654 >gi|266623315|ref|ZP_06116250.1| ATP-dependent DNA helicase RecG [Clostridium hathewayi DSM 13479] gi|288864892|gb|EFC97190.1| ATP-dependent DNA helicase RecG [Clostridium hathewayi DSM 13479] Length = 683 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 220/669 (32%), Positives = 369/669 (55%), Gaps = 18/669 (2%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL + +G+G+K +K+ ET +LL Y+P ++ + E+ + ++ Sbjct: 5 PLDSLKGIGEKTGRLFAKL-----GIET-VDELLEYYPRAYDACEEPVSVGELKPDTVMA 58 Query: 72 ITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 ++G + + + + + ++ D TG +TL ++ L G + G++ Sbjct: 59 VSGVLFKSAEVKRYSHIQVITTMIRDITGSLTLTWY--NMPYLHATLKAGMRAVFRGRVV 116 Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190 K R+ M P ++ ++ +Y GL + + +ALS ++ +++ Sbjct: 117 KKNGRLTMEQPEIFLGDAYGEVIHSMQPIYGQTKGLPNKTIVRAVKQALSARQMVRDYMP 176 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR-KQFKK 249 DL + A IH P + + AR+RL +DE +A+ ++ ++ + Sbjct: 177 LDLRIRHELAEYNFAIEHIHFPTDRTELLF---ARKRLVFDEFFLFLMAVRRLKDRRVDR 233 Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309 E P+ ++ ++++N+P++ T +Q + ++ +DM+ K M R++QGDVGSGKT++ Sbjct: 234 ESHFPMKPSDEV-MRLVKNLPYALTNAQNKVLTEVFRDMTGKKVMNRLIQGDVGSGKTII 292 Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQAHRRKA 367 A++A+ G Q +M P +LA+QHYE + + I V ++TG+M +R A Sbjct: 293 AVLALLETACNGFQGALMVPTEVLARQHYESMLSLFEENGIEKQVVLVTGSMTAKEKRTA 352 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 E+IA +A II+GTHAL Q+ + Y KL LVI DEQHRFGV QR L K PH+L+M+ Sbjct: 353 YEKIASHEADIIVGTHALIQEKVVYDKLALVITDEQHRFGVSQREMLGDKGDEPHILVMS 412 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL + GD+DIS I E PA R PIK ++ + +K ++ G++AY Sbjct: 413 ATPIPRTLAIIIYGDLDISIIDELPANRLPIKNCVVDTSYRSTAYSFIKGEVAAGRQAYV 472 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 ICP +E + +V++ L S+ +HG+M +K ++M+ F G K+L+ Sbjct: 473 ICPMVEASEMIEAENVLDYSKKLQSALPGISVEYLHGKMKAREKNAIMERFAAGEIKVLV 532 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 +TTV+EVG++V +A++++IENAE FGLAQLHQLRGRVGRG+ S CIL+ + + Sbjct: 533 STTVVEVGVNVPNATVMMIENAERFGLAQLHQLRGRVGRGKHQSYCILV-DGSGQEGTRE 591 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666 RL++L + DGF IA EDLK R G+I G++QSG +F +A ++L+ ++ + Sbjct: 592 RLTILSKSNDGFYIASEDLKLRGPGDIFGLRQSGDLEFKLADIFTDANILKTVSEEVNRL 651 Query: 667 LTQDPDLTS 675 L +DP+LTS Sbjct: 652 LDEDPELTS 660 >gi|302389602|ref|YP_003825423.1| ATP-dependent DNA helicase RecG [Thermosediminibacter oceani DSM 16646] gi|302200230|gb|ADL07800.1| ATP-dependent DNA helicase RecG [Thermosediminibacter oceani DSM 16646] Length = 674 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 237/668 (35%), Positives = 371/668 (55%), Gaps = 23/668 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67 L + + +GVG + L + IN +DLL + P ++D P E + Sbjct: 3 LLSEVQYIKGVGPSRAKLLRSLGINT-------VMDLLHFFPRRYLD--LTPLNFEQGHD 53 Query: 68 RIVTITGYISQHSSFQLQKR---RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124 V I +++ R R KI + DG + + +FF +K+ F G K+ Sbjct: 54 DSVGAFPCIVADYGYEVLTRSRMRIVKIPVTDGRRKGSAVFF--NQPYMKDAFKPGDKLV 111 Query: 125 VTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183 + GKI+K +++P + F + V++ I VY L GL+ + +KII L Sbjct: 112 LIGKIRKNYGEYEILNPEWQKFEKTDYVDYARICPVYPLTKGLTQKIMRKIIKSVLQDPL 171 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 + E + + +L++ A A IH P + +E + A+ER A++ELL Q+A+++ Sbjct: 172 EVDEVLPQSVLKEYRLMPKASALRNIHFP---ESWEKLTKAQERFAFEELLLFQLAMMIT 228 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 R+ E + + + L+N+PFS T+ Q+ IK+I+ D+ M R++QGDVG Sbjct: 229 RRHLMGEKRKNTYKDFDL-KPFLKNLPFSLTEGQKKVIKEIISDLKSDRIMNRLIQGDVG 287 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA IA+ AV+ G Q M P IL+ QH +KK+ I VE++ G+MP+A Sbjct: 288 SGKTVVASIALYLAVKNGYQGAFMVPTEILSIQHGATLKKFLNPHGIKVEVLKGDMPKAV 347 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 + + L + G+ +++GTHAL Q+++++Y+L +V+ DEQHRFGV+QR L +K P V Sbjct: 348 KEQILCDLEKGRIDVVVGTHALIQENVKFYRLGMVVTDEQHRFGVRQREALVKKGYYPDV 407 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+M+ATPIPRTL LT D+DIS I P GR+ + T ++ + V + ++ + +G Sbjct: 408 LVMSATPIPRTLALTIYSDLDISVIDTMPRGRQKVDTYVVDESMRTRVYKFMESEIKKGN 467 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542 +AY +CP +EE + SV E L + F I I+HG+M +K+ +M F + Sbjct: 468 QAYVVCPAVEE-SDIGLSSVEEIGRELQDTFPHLRIGILHGKMKTEEKDRIMKDFYDKKI 526 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 +L+ATTV+EVG+DV A++I++ENAE FGLAQLHQLRGRVGR + S C+L+ Sbjct: 527 DVLVATTVVEVGVDVPSATLIVVENAERFGLAQLHQLRGRVGRSDLKSYCVLISGSK-DM 585 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662 RL+ + T +GF IA++DL+ R GE LG+KQ GMP+F A LLE + Sbjct: 586 GVKARLNFMMKTHNGFEIAQKDLELRGPGEFLGVKQHGMPEFKFASLIKDLKLLETTKTL 645 Query: 663 AKHILTQD 670 A I+ +D Sbjct: 646 ADEIIEKD 653 >gi|261405809|ref|YP_003242050.1| ATP-dependent DNA helicase RecG [Paenibacillus sp. Y412MC10] gi|261282272|gb|ACX64243.1| ATP-dependent DNA helicase RecG [Paenibacillus sp. Y412MC10] Length = 683 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 225/649 (34%), Positives = 363/649 (55%), Gaps = 17/649 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99 DLL Y+P + D R +SE+ + +TI I+ Q R+ K+L + Sbjct: 34 DLLEYYPFRYEDYRLR-SLSEVKDGDKITIQAKIASVPVLQRYGRKSRLTCKMLAENWM- 91 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159 T +F R LK+ GR+I +TGK + + ++ + F + ++ V Sbjct: 92 -FTATWFNR--HFLKDQLTAGREIVLTGKWDQRRMQLTVSESE--FPDKGTFRSGTLQPV 146 Query: 160 YSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 YS+ ++ +K + +AL + ++PE + + LL+K A IH P +++ Sbjct: 147 YSIGGKITQSWIRKTMGQALEQYGEMIPEILPQSLLRKYDLMPRKAAIMTIHQPVDSREG 206 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277 + R R+ Y+EL Q+ + R + + G+ + ++ +R+ PF T +Q Sbjct: 207 Q---EGRRRMVYEELFLFQLKMQAFRALNRGRMDGVVHTADNATIREFVRSFPFELTDAQ 263 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + +IL DM M R+LQGDVGSGKT+VA IA+ V +G Q +M P ILA+QH Sbjct: 264 KKVELEILHDMRSPYCMNRLLQGDVGSGKTIVAAIALFTTVRSGFQGALMVPTEILAEQH 323 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 ++K + I V ++TG++ R+ L + G I++GTHAL QD + + +L L Sbjct: 324 MRSLQKLFEPFGITVGLLTGSVTGKKRKDLLASLQMGLTDIVVGTHALIQDDVYFRELGL 383 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 V+ DEQHRFGV QR L +K P VL MTATPIPRTL +T+ GD+D+S ++E+P GR P Sbjct: 384 VVTDEQHRFGVNQRSVLRRKGYNPDVLTMTATPIPRTLAITAFGDMDVSTLSERPKGRIP 443 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516 I T + +D V+ + +++G++AY I P IEE + + ++ ++ + + F + Sbjct: 444 ITTYWVKHELMDRVLGFISREVNQGRQAYLIAPLIEESDKLDVQNAIDLHVQMQQAFPAY 503 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 S+ ++HGRM+ +K+ VM F + +LLI+TTV+EVG+DV +A+++II +A+ FGL+QL Sbjct: 504 SVGLLHGRMTPAEKDEVMRQFYSNEVQLLISTTVVEVGVDVPNATLMIIMDADRFGLSQL 563 Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636 HQLRGRVGRG+ S C+L+ P S+ R+ V+ TEDGF ++ DL+ R G+ G Sbjct: 564 HQLRGRVGRGQHASYCVLVADPK-SEVGQERMQVMTETEDGFEVSRRDLELRGPGDFFGT 622 Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685 KQSG+P+F +A ++E AR DA +++ TS + +R L Sbjct: 623 KQSGLPEFRLADMVADFKVVEEARGDAAALVSDSSFWTSPEYEPLRDFL 671 >gi|311106511|ref|YP_003979364.1| ATP-dependent DNA helicase RecG [Achromobacter xylosoxidans A8] gi|310761200|gb|ADP16649.1| ATP-dependent DNA helicase RecG [Achromobacter xylosoxidans A8] Length = 696 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 244/672 (36%), Positives = 362/672 (53%), Gaps = 28/672 (4%) Query: 17 RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76 +G GK + K+ N G F+ + P + D IS++ + G I Sbjct: 16 KGAGKAMTDTERKLRNLGLVLPEDFV---LHLPLRYEDETRIVPISDLRPGFAGQVEGEI 72 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITL--LFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134 ++ S + RR L D +GE+ L L FY + +V G+++ G+++ Sbjct: 73 TK-SEVSYRPRRQLTATLADDSGELQLRWLNFYPSQQKQVSV---GKRLRARGEVRGGLF 128 Query: 135 RIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193 MVHP + D P + VY GL ++ I +AL R L + + + Sbjct: 129 GRQMVHPRM---TNADAPLPTALTPVYPSTEGLPQLTLRRAIAQALDRAD-LSDTLPDEA 184 Query: 194 LQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQ--F 247 + P A +H P + + + PA R+ +DELLA Q++L R Sbjct: 185 RARYDLPPFEPAIRALHTPAQGESEQALLDRVHPAWRRIKFDELLAQQLSLAAARAARRV 244 Query: 248 KKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 K+ +P N G + K+ +PF T +QE +++I D+++ M R+LQGDVGSGK Sbjct: 245 KEAESLPARNEAGGLVAKLYEALPFKLTGAQERVVQEISADLAKPYPMHRLLQGDVGSGK 304 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366 T+VA IA A A+ +G Q +MAP ILA+QH+ + + Q + V ++G++ RR+ Sbjct: 305 TVVAAIAAAQAIASGAQVALMAPTEILAEQHFRKLVSWLQPLGVNVAWLSGSLSAKARRE 364 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA------TA 420 A A G +I+GT AL QD +++++L L IVDEQHRFGV QRL LT+K Sbjct: 365 AAAAAADGSVQLIVGTQALIQDHVEFHRLGLSIVDEQHRFGVGQRLALTRKGETVRGRNV 424 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 PH L M+ATPIPRTL +T D+D+S I E P GR P+ T ++ R +EVI + Sbjct: 425 PHQLNMSATPIPRTLAMTFFADLDVSVIDELPPGRSPVLTKLVSDARREEVIAHIAQAAR 484 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539 G++AYW+CP +EE + ++ V+ + + I ++HGR+ +K +VM +F++ Sbjct: 485 GGQQAYWVCPLVEESEALELQTAVDTYEGMRVDLPDLRIGLVHGRLPQAEKAAVMQAFRD 544 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+LLY P Sbjct: 545 GEVDLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCVLLYQTP 604 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 LS+ + RL + T DGF IA DL+QR GE LG +QSGM A E ++ E A Sbjct: 605 LSQVARERLRAMFETSDGFEIARRDLEQRGPGEFLGTRQSGMALLRFADLETDAAIAEDA 664 Query: 660 RKDAKHILTQDP 671 R A + + P Sbjct: 665 RDAAVWLRAEHP 676 >gi|291557450|emb|CBL34567.1| ATP-dependent DNA helicase RecG [Eubacterium siraeum V10Sc8a] Length = 677 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 246/672 (36%), Positives = 367/672 (54%), Gaps = 35/672 (5%) Query: 11 APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE-ISEERI 69 +P+ +GVG+K + L K+ T + L ++P +ID + IS+ +++ Sbjct: 10 SPVCYIKGVGEKRAKLLEKL------GITTALQLAEHYPRGYIDFNETTAISDLVNDGEN 63 Query: 70 VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF---YRKTEM-LKNVFFEGRKITV 125 + +++ + +K+L++DGTG++ + FF Y T + L N + Sbjct: 64 HVVKAIVTKKFPAYYGRINIFKVLVSDGTGDMLITFFNSDYSFTRLKLDNEY------CF 117 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 GK+ R M P +F +SQD N + YSL TG+S + I L R Sbjct: 118 YGKMAGDFLRKEMNSP--VFIDSQDPN--KLMPRYSLTTGISQGIMSNCIKNVL-RDFTF 172 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 PE + L+ K + S A IH P + ++ A+ RL ++EL Q+ L M+ Sbjct: 173 PEHLTDTLMDKYNLISYDNALRWIHFPENKEQYD---KAKYRLTFEELFLLQLGLKSMKN 229 Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + KK G P+ E K + ++PF+ T +Q AI + DM + M R+LQGDVGSG Sbjct: 230 RKKKLAGAPM--ESKSIDEYYSSLPFTLTGAQIRAISECCDDMQKSVPMNRLLQGDVGSG 287 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT VA A A G Q+ +MAP ILA+QHY+ + K+ + + ++TG+ A ++ Sbjct: 288 KTAVAAGAAYFAYLNGYQSTLMAPTEILAKQHYDTLYKFLAPLGVTIALLTGSQTPAQKK 347 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + + IA GQ + +GT AL Q S ++ L LVI DEQHRFGV QR L K PHVL+ Sbjct: 348 QIRQLIADGQIDVAVGTQALIQKSTKFSSLGLVITDEQHRFGVGQRAALGSKGNEPHVLV 407 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 M+ATPIPRTL + GD+DIS + E P GR PI+T + + + + + ++ G +A Sbjct: 408 MSATPIPRTLGMIIYGDLDISILDEMPKGRLPIRTYAVDTSYRERLYRFILKYVNNGFQA 467 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCK 543 Y +CP IEE S + E NSL +++ ++HG+M DK++VM FK+ K Sbjct: 468 YIVCPLIEEGV-SEKAAATEYINSLQNTCLANVPTGLLHGKMKQADKDAVMQDFKDNKLK 526 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L+AT+VIEVG+DV +A +++IENAE FGL+QLHQLRGRVGRG E S CIL+ +K+ Sbjct: 527 VLVATSVIEVGVDVPNAVVMVIENAEQFGLSQLHQLRGRVGRGTEQSHCILVTD---NKS 583 Query: 604 SYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 YT R+ + T DGF IA EDLK R G+ G KQ G+P+ IA +L++ + Sbjct: 584 DYTKQRMDTMVKTSDGFEIANEDLKLRGPGDFFGSKQHGLPQLKIADIYADLDILKMTGE 643 Query: 662 DAKHILTQDPDL 673 A IL D L Sbjct: 644 AADDILRDDSRL 655 >gi|167750970|ref|ZP_02423097.1| hypothetical protein EUBSIR_01955 [Eubacterium siraeum DSM 15702] gi|167656149|gb|EDS00279.1| hypothetical protein EUBSIR_01955 [Eubacterium siraeum DSM 15702] Length = 677 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 246/672 (36%), Positives = 367/672 (54%), Gaps = 35/672 (5%) Query: 11 APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE-ISEERI 69 +P+ +GVG+K + L K+ T + L ++P +ID + IS+ +++ Sbjct: 10 SPVCYIKGVGEKRAKLLEKL------GITTALQLAEHYPRGYIDFNETTAISDLVNDGEN 63 Query: 70 VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF---YRKTEM-LKNVFFEGRKITV 125 + +++ + +K+L++DGTG++ + FF Y T + L N + Sbjct: 64 HVVKAIVTKKFPAYYGRINIFKVLVSDGTGDMLITFFNSDYSFTRLKLDNEY------CF 117 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 GK+ R M P +F +SQD N + YSL TG+S + I L R Sbjct: 118 YGKMAGDFLRKEMNSP--VFIDSQDPN--KLMPRYSLTTGISQGIMSNCIKNVL-RDFTF 172 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 PE + L+ K S S A IH P + ++ A+ RL ++EL Q+ L M+ Sbjct: 173 PEHLSDTLMDKYSLISYDNALRWIHFPENKEQYD---KAKYRLTFEELFLLQLGLKSMKN 229 Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + K+ G P+ E K + ++PF+ T +Q AI + DM + M R+LQGDVGSG Sbjct: 230 RKKRLAGAPM--ESKSIDEYYSSLPFTLTGAQIRAISECCDDMQKSVPMNRLLQGDVGSG 287 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT VA A A G Q+ +MAP ILA+QHY+ + K+ + + ++TG+ A ++ Sbjct: 288 KTAVAAGAAYFAYLNGYQSTLMAPTEILAKQHYDTLYKFLAPLGVTIALLTGSQTPAQKK 347 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + + IA GQ + +GT AL Q S ++ L LVI DEQHRFGV QR L K PHVL+ Sbjct: 348 QIRQLIADGQIDVAVGTQALIQKSTRFSSLGLVITDEQHRFGVGQRAALGSKGNEPHVLV 407 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 M+ATPIPRTL + GD+DIS + E P GR PI+T + + + + + ++ G +A Sbjct: 408 MSATPIPRTLGMIIYGDLDISILDEMPKGRLPIRTYAVDTSYRERLYRFILKYVNNGFQA 467 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCK 543 Y +CP IEE S + E NSL +++ ++HG+M DK++VM FK+ K Sbjct: 468 YIVCPLIEEGV-SEKAAATEYINSLQNTCLANVPTGLLHGKMKQADKDAVMQDFKDNKLK 526 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L+AT+VIEVG+DV +A +++IENAE FGL+QLHQLRGRVGRG E S CIL+ +K+ Sbjct: 527 VLVATSVIEVGVDVPNAVVMVIENAEQFGLSQLHQLRGRVGRGTEQSHCILVTD---NKS 583 Query: 604 SYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 YT R+ + T DGF IA EDLK R G+ G KQ G+P+ IA +L++ + Sbjct: 584 DYTKQRMDTMVKTSDGFEIANEDLKLRGPGDFFGSKQHGLPQLKIADIYADLDILKMTGE 643 Query: 662 DAKHILTQDPDL 673 A IL D L Sbjct: 644 AADDILRDDSRL 655 >gi|223940295|ref|ZP_03632153.1| ATP-dependent DNA helicase RecG [bacterium Ellin514] gi|223891062|gb|EEF57565.1| ATP-dependent DNA helicase RecG [bacterium Ellin514] Length = 706 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 244/696 (35%), Positives = 371/696 (53%), Gaps = 57/696 (8%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKI--INCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64 +PL PL RGVG + L+++ G DLL + P + DR Y I+E+ Sbjct: 18 SPLARPLKELRGVGTEREAQLARLGLFTVG--------DLLLHRPRRYEDRRYFRNIAEL 69 Query: 65 SEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122 + T G I F+ R ++I+L+DGTG + ++ ++N F +G + Sbjct: 70 QLDEASTTRGTIVALGLKRFKKGMRSVFEIILDDGTGRLHCRWW--NLPFMQNYFAQGDE 127 Query: 123 ITVTGKIKKLKNRIIMVHPHY-IFHNSQD--VNFPLIEAVYSLPTGL-----------SV 168 + V GK+ LK R I HP + + ++ ++ I +Y L G+ ++ Sbjct: 128 VFVFGKLNSLKPRTI-DHPETEVIYGGEESSIHINRIAPIYPLTEGMPQRWIRSFIHRTL 186 Query: 169 DLFKKIIVEALSRLPVLPEWIEKDLLQK---------------KSFPSIAEAFNIIHNPR 213 F+K IVE +L + + + K PS A A +++H P Sbjct: 187 GEFEKEIVEPWPKLCEETQGVAASFRLRDYGLTSKERPEAQGYKELPSKANALHMVHFPE 246 Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK-KEIGIPINVEGKIAQKILRNIPFS 272 D E AR RLA DE + Q + L RK+F+ K P + + L + F+ Sbjct: 247 AIGDIEL---ARRRLALDEFIELQREIQLRRKRFELKAQSRPCAGDNHFIKPFLAKLGFT 303 Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332 T++Q ++++ +DM + M R+LQGDVGSGKT+V+ A+E+G +MAP I Sbjct: 304 LTEAQTKVLRELRKDMGGAHPMRRLLQGDVGSGKTVVSACCALMALESGYNVALMAPTEI 363 Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA----LERIAHGQAH---IIIGTHAL 385 LA+QH + +++ + I V + TG+ K L +A +H + IGTHAL Sbjct: 364 LAEQHLQNFRRWFEPLGIRVIMQTGSQKSVRADKTAGPMLPEVAESTSHQLTMAIGTHAL 423 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445 +D L LVI+DEQH+FGV QR KL +K PH+L+MTATPIPRTL LT G++D+ Sbjct: 424 IEDGFALNHLGLVIIDEQHKFGVTQREKLLRKGNYPHLLVMTATPIPRTLGLTLYGELDV 483 Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 S I E P GR IKT + +++ +V ++ L+EG++AY + P++EE + ++V + Sbjct: 484 STIDELPTGRGRIKTFVRTADKLPKVWAFIREKLAEGRQAYVVYPRVEESGPTGLKAVTK 543 Query: 506 RFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 F +L I ++HGR+ +KE VM F+ +L+AT +IEVG+DV +A+I++ Sbjct: 544 EFENLKSLLAPYRIGLLHGRLKAAEKELVMTGFRKNQVNILLATPLIEVGVDVPNATIMV 603 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624 IEN+E FGLAQLHQLRGR+GRG S CIL+ + + RL VL+ T DGF IAE D Sbjct: 604 IENSEQFGLAQLHQLRGRIGRGAHDSFCILIAAVK-NAEARQRLQVLEETNDGFRIAEAD 662 Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 LK R GE+LG +QSG+P F +L+ +AR Sbjct: 663 LKIRGPGELLGQQQSGLPNFKFGNLAEDLALIRLAR 698 >gi|222097300|ref|YP_002531357.1| ATP-dependent DNA helicase recg [Bacillus cereus Q1] gi|221241358|gb|ACM14068.1| ATP-dependent DNA helicase RecG [Bacillus cereus Q1] Length = 657 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 225/631 (35%), Positives = 362/631 (57%), Gaps = 27/631 (4%) Query: 44 LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE--I 101 LL + P + D + ++E+ + VT+ G + Q ++ ++ + G I Sbjct: 9 LLEHFPYRYED-YAMKDLAEVKHDERVTVEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLI 67 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161 T + F R K +T+TGK + + I + H+ V +E VYS Sbjct: 68 TAVCFNRP--YYKQKLNLDETVTITGKWDQHRQTIAVSELHF----GPVVRQQEVEPVYS 121 Query: 162 LPTGLSVDLFKKIIVEAL-----SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216 + L+V ++ I +AL S + VLP+ + L + K P EA +H P + Sbjct: 122 VKGKLTVKQMRRFIAQALKEYGDSIVEVLPDGL---LSRYKLLPRY-EALRALHFPSGQE 177 Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTK 275 D + AR R Y+E Q+ + +RK + + G + + Q+ + +PF T Sbjct: 178 DLK---QARRRFVYEEFFLFQLKMQTLRKMERENSKGTKKEIPSEELQEFIDALPFPLTG 234 Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 +Q + +I++DM+ RM R+LQGDVGSGKT+VA I + AA A Q +M P ILA+ Sbjct: 235 AQSRVVDEIMKDMTSPYRMNRLLQGDVGSGKTVVAAIGLYAAKLAHYQGALMVPTEILAE 294 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 QHY+ + + + VE++T ++ RR+ L ++ G+ I++GTHAL QD + +++L Sbjct: 295 QHYQSLAETFSRFGMKVELLTSSVKGVRRREILAKLEQGEIDILVGTHALIQDEVIFHRL 354 Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 LVI DEQHRFGV QR L +K +P VL MTATPIPRTL +T+ G++D+S I E PAGR Sbjct: 355 GLVITDEQHRFGVAQRRVLREKGESPDVLFMTATPIPRTLAITAFGEMDVSIIDEMPAGR 414 Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 K I+T + +D V+ ++ + +G++AY ICP IEE ++ + ++ ++ + L H+ Sbjct: 415 KVIETYWAKHDMLDRVLGFVEKEIKKGRQAYVICPLIEESEKLDVQNAIDLHSMLTHHYQ 474 Query: 516 S--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 + ++HGR+S +KE +M F ++L++TTV+EVG++V +A++++I +AE FGL Sbjct: 475 GKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERFGL 534 Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633 +QLHQLRGRVGRG E S C+L+ P S+ R+ ++ T DGF+++E+DL+ R G+ Sbjct: 535 SQLHQLRGRVGRGSEQSYCLLIADPK-SETGKERMRIMTETNDGFVLSEKDLELRGPGDF 593 Query: 634 LGIKQSGMPKFLIAQPELHD-SLLEIARKDA 663 G KQSG+P+F +A +HD LE AR+DA Sbjct: 594 FGSKQSGLPEFKVADM-VHDYRALETARQDA 623 >gi|145219225|ref|YP_001129934.1| ATP-dependent DNA helicase RecG [Prosthecochloris vibrioformis DSM 265] gi|145205389|gb|ABP36432.1| ATP-dependent DNA helicase RecG [Chlorobium phaeovibrioides DSM 265] Length = 705 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 230/688 (33%), Positives = 368/688 (53%), Gaps = 38/688 (5%) Query: 11 APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70 + L +G+G K KI A + +L Y P ++DR I+ + + Sbjct: 5 SSLQALKGLGPK------KIEILQEAGISSLENLFDYWPRRYLDRRAMNSIAGLRMGEMA 58 Query: 71 TITGYISQHSSFQLQKRRP-YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 T+ G + Q + +K+ L D +G + L +F R G + V GK+ Sbjct: 59 TVVGTVRSAGIEQGGRGMARFKVKLADRSGVLDLTWF-RGARYFSRAIVPGDILAVYGKV 117 Query: 130 KKLKNRIIMVHPHY------------------IFHNSQDVN-FPLIEAVYSLPTGLSVDL 170 + M HP + +F+ + + +P EA+ +GL+ Sbjct: 118 GYFGRQAQMQHPDFDRLGREGADRDKEGSDAELFNTGRIIPLYPTSEAMKR--SGLASRQ 175 Query: 171 FKKIIVEALS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA 229 + +I A R P E + +L+ S ++EA+ +H P + + A R+ Sbjct: 176 LRGLIARAFDIRQPGGTENLSSGILKAHSLMPLSEAYRELHQPSSPERLQM---AEYRMK 232 Query: 230 YDELLAGQIALLLMRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288 + EL Q++ L R+ + + + G+ + +P+S T +Q++AI+++ +D+ Sbjct: 233 WTELFYAQLSFALRRRALRHTRTAVQFSHSGEFTAALHAALPYSLTGAQKNAIRELYRDL 292 Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348 ++ M R++QGDVGSGKT+VA+ AMA A + Q+V MAP ILA QH+ +K+ + Sbjct: 293 KGESPMQRLVQGDVGSGKTIVAMFAMALAADNNLQSVFMAPTEILAVQHWLGMKRLFEPL 352 Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408 I V ++TG P+ R L + G+ HI +GTHAL Q + ++ L LV++DEQHRFGV Sbjct: 353 GIQVCLLTGRQPKKVREALLMELREGRVHIAVGTHALLQHDVDFHSLGLVVIDEQHRFGV 412 Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468 QR L KA PHVLLMTATPIPRTL + GD+D+S I E P GR+P++T++ Sbjct: 413 LQRKTLQDKAQHPHVLLMTATPIPRTLTMGVFGDLDVSLIREMPTGRQPVRTLVQQEADK 472 Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMS 526 V E L+ ++ G++ Y + P +EE ++ + ++ VE F+ L + +IHG+M+ Sbjct: 473 PRVFEFLRAQVAAGRQGYIVYPLVEESEKVDLKAAVESFDELSASVFPDLRLGLIHGQMT 532 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 KE VM+ F++G +L+ TTVIEVG+DV +A++++I +AE FGLAQLHQLRGRVGRG Sbjct: 533 PDMKEVVMEQFRSGLIDILVGTTVIEVGVDVANATVMVIMHAERFGLAQLHQLRGRVGRG 592 Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646 + SSC LLY L+ + RL + +T DGF+I+E D R G +LG +QSG L Sbjct: 593 TQASSCFLLY-AKLTSDGKERLDAMASTTDGFVISEIDAAIRGAGNLLGKEQSGTLSGLK 651 Query: 647 AQPELHD-SLLEIARKDAKHILTQDPDL 673 D +++ AR+ A ++ +D +L Sbjct: 652 MADLTRDFDIMQSAREAAFSLVAEDGEL 679 >gi|329926589|ref|ZP_08281002.1| ATP-dependent DNA helicase RecG [Paenibacillus sp. HGF5] gi|328939130|gb|EGG35493.1| ATP-dependent DNA helicase RecG [Paenibacillus sp. HGF5] Length = 683 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 225/649 (34%), Positives = 363/649 (55%), Gaps = 17/649 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99 DLL Y+P + D R +SE+ + +TI I+ Q R+ K+L + Sbjct: 34 DLLEYYPFRYEDYRLR-SLSEVKDGDKITIQAKIASVPVLQRYGRKSRLTCKMLAENWM- 91 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159 T +F R LK+ GR+I +TGK + + ++ + F + ++ V Sbjct: 92 -FTATWFNR--HFLKDQLTAGREIVLTGKWDQRRMQLTVSESE--FPDKGAFRSGTLQPV 146 Query: 160 YSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 YS+ ++ +K + +AL + ++PE + + LL+K A IH P +++ Sbjct: 147 YSIGGKITQSWIRKTMGQALEQYGEMIPEILPQSLLRKYDLMPRKAAIMTIHQPVDSREG 206 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277 + R R+ Y+EL Q+ + R + + G+ + ++ +R+ PF T +Q Sbjct: 207 Q---EGRRRMVYEELFLFQLKMQAFRALNRGRMDGVVHTADNATIREFVRSFPFELTDAQ 263 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + +IL DM M R+LQGDVGSGKT+VA IA+ V +G Q +M P ILA+QH Sbjct: 264 KKVELEILHDMRSPYCMNRLLQGDVGSGKTIVAAIALFTTVRSGFQGALMVPTEILAEQH 323 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 ++K + I V ++TG++ R+ L + G I++GTHAL QD + + +L L Sbjct: 324 MRSLQKLFEPFGITVGLLTGSVTGKKRKDLLASLQMGLTDIVVGTHALIQDDVYFRELGL 383 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 V+ DEQHRFGV QR L +K P VL MTATPIPRTL +T+ GD+D+S ++E+P GR P Sbjct: 384 VVTDEQHRFGVNQRSVLRRKGYNPDVLTMTATPIPRTLAITAFGDMDVSTLSERPKGRIP 443 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516 I T + +D V+ + +++G++AY I P IEE + + ++ ++ + + F + Sbjct: 444 ITTYWVKHELMDRVLGFISREVNQGRQAYLIAPLIEESDKLDVQNAIDLHVQMQQAFPAY 503 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 S+ ++HGRM+ +K+ VM F + +LLI+TTV+EVG+DV +A+++II +A+ FGL+QL Sbjct: 504 SVGLLHGRMTPAEKDEVMRQFYSNEVQLLISTTVVEVGVDVPNATLMIIMDADRFGLSQL 563 Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636 HQLRGRVGRG+ S C+L+ P S+ R+ V+ TEDGF ++ DL+ R G+ G Sbjct: 564 HQLRGRVGRGQHASYCVLVADPK-SEVGQERMQVMTETEDGFEVSRRDLELRGPGDFFGT 622 Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685 KQSG+P+F +A ++E AR DA +++ TS + +R L Sbjct: 623 KQSGLPEFRLADMVADFKVVEEARGDAAALVSDSSFWTSPEYEPLRDFL 671 >gi|163941593|ref|YP_001646477.1| ATP-dependent DNA helicase RecG [Bacillus weihenstephanensis KBAB4] gi|163863790|gb|ABY44849.1| ATP-dependent DNA helicase RecG [Bacillus weihenstephanensis KBAB4] Length = 685 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 237/675 (35%), Positives = 380/675 (56%), Gaps = 57/675 (8%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G + S L ++ ++ LL + P + D + ++E+ + VT Sbjct: 11 PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 63 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G + Q ++ ++ + G IT + F R K +T+TGK Sbjct: 64 VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRP--YYKQKLNLDETVTITGKW 121 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNF-PLI-----EAVYSLPTGLSVDLFKKIIVEAL---- 179 + + I + ++NF P++ E VYS+ L+V ++ + +A Sbjct: 122 DQHRQTIAV----------SELNFGPVVRQQEVEPVYSVKGKLTVKQMRRFVAQAFKEYG 171 Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 S + VLP+ LL + S EA +H P +D + AR R Y+E Q+ Sbjct: 172 DSIVEVLPD----GLLSRYKLLSRYEALRGLHFPVGQEDLK---QARRRFVYEEFFLFQL 224 Query: 239 ALLLMRKQ-------FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 + +RK KKEI + VE Q+ +PF T +Q + +I++DM Sbjct: 225 KMQTLRKMERENSKGTKKEISL---VE---LQEFTDALPFPLTGAQRRVVDEIMKDMISP 278 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351 RM R+LQGDVGSGKT+VA IA+ AA A Q +M P ILA+QHY+ + + + + Sbjct: 279 YRMNRLLQGDVGSGKTVVAAIALYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMK 338 Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411 VE++T ++ A RR+ L R+ G+ I++GTHAL QD + +++L LVI DEQHRFGV QR Sbjct: 339 VELLTSSVKGARRREILSRLEQGEVDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQR 398 Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471 L +K +P VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D V Sbjct: 399 RVLREKGESPDVLFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRV 458 Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDID 529 + ++ + +G++AY ICP IEE ++ + ++ ++ + L H+ + ++HGR+S + Sbjct: 459 LGFVEKEMKKGRQAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQE 518 Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589 KE +M F ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E Sbjct: 519 KEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQ 578 Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649 S C+L+ P S+ R+ ++ T DGF+++E+DL+ R G+ G KQSG+P+F +A Sbjct: 579 SYCLLIADPK-SETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM 637 Query: 650 ELHD-SLLEIARKDA 663 +HD LE AR+DA Sbjct: 638 -VHDYRALETARQDA 651 >gi|310642729|ref|YP_003947487.1| ATP-dependent DNA helicase recg [Paenibacillus polymyxa SC2] gi|309247679|gb|ADO57246.1| ATP-dependent DNA helicase RecG [Paenibacillus polymyxa SC2] Length = 682 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 234/659 (35%), Positives = 367/659 (55%), Gaps = 20/659 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99 D+L Y+P + D R +SE+ + +T+ I Q R+ K++ D Sbjct: 33 DMLEYYPFRYEDYRLR-SLSEVKDGDKITVQAKIMGIPVLQRYGRKSRLTCKLMAEDWM- 90 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159 T +F R LK+ GR+I VTGK LK R+ M F + I+ V Sbjct: 91 -FTATWFNR--HFLKDQLTSGREIVVTGKWD-LK-RMQMTVADSEFPDKGVARSGTIQPV 145 Query: 160 YSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 YS+ ++ +K + + L + ++PE + L++K S +A IH P+ ++ Sbjct: 146 YSIGGKITQSWMRKTMNQTLQQFGEMIPEILPDLLVRKYSMMPRKQAIAGIHQPQDNREG 205 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 + AR R+ Y+EL Q+ + R + + G+ V+ ++ +R +PF T +Q Sbjct: 206 Q---EARRRMVYEELFLFQLKMQAFRALNRGRADGVVHTVDNATIREFVRALPFELTDAQ 262 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + +IL D+ M R+LQGDVGSGKT+VA I + A V +G Q +M P ILA+QH Sbjct: 263 KKVELEILHDLRSPYCMNRLLQGDVGSGKTVVAAIGLFATVRSGFQGALMVPTEILAEQH 322 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 + K + I V ++TG+ R++ L + G I++GTHAL Q+ + + +L L Sbjct: 323 MRSLHKLFEPFGISVGLLTGSTTGKKRKELLAALQMGLLDIVVGTHALIQEDVYFRQLGL 382 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 V+ DEQHRFGV QR L +K P VL MTATPIPRTL +T+ GD+D+S I+E+P GR P Sbjct: 383 VVTDEQHRFGVNQRSVLRRKGYNPDVLTMTATPIPRTLAITAFGDMDVSTISERPKGRIP 442 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516 I T + +D V+ + + +G++AY ICP IEE ++ + ++ ++ + + F Sbjct: 443 ISTYWVKHELMDRVLGFISREVDQGRQAYLICPLIEESEKLDVQNAIDLHIQMQQAFPHY 502 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 + ++HGRM+ +KE VM SF +LL++TTV+EVG+DV +A+++II +A+ FGL+QL Sbjct: 503 RVGLLHGRMTPAEKEEVMRSFYANEVQLLVSTTVVEVGVDVPNATLMIIMDADRFGLSQL 562 Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636 HQLRGRVGRG S C+L+ P S+ R+ V+ +T+DGF +A DL R G+ G Sbjct: 563 HQLRGRVGRGAHASYCVLIADPK-SEVGQERMKVMTDTDDGFEVARRDLDLRGPGDFFGT 621 Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695 KQSG+P+F +A +LE AR+DA ++ TS + +++R L Q + FQ Sbjct: 622 KQSGLPEFRLADMVADFEVLEKAREDATDLIKDSSFWTSPQYEALRGYL---QKEQIFQ 677 >gi|75908279|ref|YP_322575.1| ATP-dependent DNA helicase RecG [Anabaena variabilis ATCC 29413] gi|75702004|gb|ABA21680.1| ATP-dependent DNA helicase RecG [Anabaena variabilis ATCC 29413] Length = 822 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 229/650 (35%), Positives = 373/650 (57%), Gaps = 23/650 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99 DLLFY+P ID + I E+ VTI + + + F K + IL L D TG Sbjct: 153 DLLFYYPRDHIDYARQVNIRELEAGETVTIVATVKKCNCFTSPKNQKLSILELILKDNTG 212 Query: 100 EITLLFFYRKT--------EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQD 150 +I + F E LK + G + G +K K + + +P + N D Sbjct: 213 QIKISRFSAGARFTSRAWQESLKRRYPVGSVLAACGLVKGTKYGLTLDNPELEVLANPGD 272 Query: 151 ----VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206 + + +YSL G+ + ++ ++ AL L + + K L +K + +A Sbjct: 273 TIESLTMGRVVPIYSLTEGVMASMVRQAVLAALPAAVHLKDPLPKGLREKYGLMELKDAI 332 Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK-EIGIPINVEGKIAQKI 265 IH P ++ + AR RL +DE Q+ LL ++Q K + + +G++ + Sbjct: 333 ANIHFPDESATLQV---ARRRLVFDEFFYLQLGLLQRQQQAKAIQTSAILAPKGQLIENF 389 Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 +PF T +Q+ + DIL D+ + M R++QGDVGSGKT+VA++A+ AA+++G QA Sbjct: 390 YEILPFQLTGAQQRVLNDILNDLQKSTPMNRLVQGDVGSGKTVVAVVAILAAIQSGYQAA 449 Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +MAP +LA+QHY + + + VE++TG+ RR+ ++ G+ +++GTHAL Sbjct: 450 LMAPTEVLAEQHYRKLVSWFNLLHLPVELLTGSTKTVKRRQIHSQLETGELPLLVGTHAL 509 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445 QD + + +L LV++DEQHRFGV+QR L QK PHVL MTATPIPRTL LT GD+++ Sbjct: 510 IQDPVNFQRLGLVVIDEQHRFGVKQRALLQQKGEQPHVLTMTATPIPRTLALTIHGDMNV 569 Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 S+I E P GR+ I+T ++ + + + ++ +++G++ Y + P +EE ++ + RS VE Sbjct: 570 SQIDELPPGRQKIQTTMLSGQQRPQAYDLIRREIAQGRQTYVVLPLVEESEKLDLRSAVE 629 Query: 506 RFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 L E + ++HGRMS +K+ + F++ ++L++TTV+EVG+DV +A+++ Sbjct: 630 EHQKLQESVFPEFQVGLLHGRMSSAEKDEAITKFRDNETQILVSTTVVEVGVDVPNATVM 689 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623 +IENAE FGL+QLHQLRGRVGRG S C+L+ S ++ RL VL+ ++DGF I+E Sbjct: 690 LIENAERFGLSQLHQLRGRVGRGAAQSYCLLM-SSSRSPDAQQRLKVLEQSQDGFFISEM 748 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 D++ R GE+LG +QSG+P F +A + +L +AR+ A+ ++ D L Sbjct: 749 DMRFRGPGEVLGTRQSGVPDFTLASLVEDEEVLLLARQAAEKVIEIDVSL 798 >gi|229134663|ref|ZP_04263472.1| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-ST196] gi|229168594|ref|ZP_04296317.1| ATP-dependent DNA helicase recG [Bacillus cereus AH621] gi|228615000|gb|EEK72102.1| ATP-dependent DNA helicase recG [Bacillus cereus AH621] gi|228648709|gb|EEL04735.1| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-ST196] Length = 682 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 237/675 (35%), Positives = 380/675 (56%), Gaps = 57/675 (8%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G + S L ++ ++ LL + P + D + ++E+ + VT Sbjct: 8 PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G + Q ++ ++ + G IT + F R K +T+TGK Sbjct: 61 VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRP--YYKQKLNLDETVTITGKW 118 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNF-PLI-----EAVYSLPTGLSVDLFKKIIVEAL---- 179 + + I + ++NF P++ E VYS+ L+V ++ + +A Sbjct: 119 DQHRQTIAV----------SELNFGPVVRQQEVEPVYSVKGKLTVKQMRRFVAQAFKEYG 168 Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 S + VLP+ LL + S EA +H P +D + AR R Y+E Q+ Sbjct: 169 DSIVEVLPD----GLLSRYKLLSRYEALRGLHFPVGQEDLK---QARRRFVYEEFFLFQL 221 Query: 239 ALLLMRKQ-------FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 + +RK KKEI + VE Q+ +PF T +Q + +I++DM Sbjct: 222 KMQTLRKMERENSKGTKKEISL---VE---LQEFTDALPFPLTGAQRRVVDEIMKDMISP 275 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351 RM R+LQGDVGSGKT+VA IA+ AA A Q +M P ILA+QHY+ + + + + Sbjct: 276 YRMNRLLQGDVGSGKTVVAAIALYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMK 335 Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411 VE++T ++ A RR+ L R+ G+ I++GTHAL QD + +++L LVI DEQHRFGV QR Sbjct: 336 VELLTSSVKGARRREILSRLEQGEVDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQR 395 Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471 L +K +P VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D V Sbjct: 396 RVLREKGESPDVLFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRV 455 Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDID 529 + ++ + +G++AY ICP IEE ++ + ++ ++ + L H+ + ++HGR+S + Sbjct: 456 LGFVEKEIKKGRQAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQE 515 Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589 KE +M F ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E Sbjct: 516 KEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQ 575 Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649 S C+L+ P S+ R+ ++ T DGF+++E+DL+ R G+ G KQSG+P+F +A Sbjct: 576 SYCLLIADPK-SETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM 634 Query: 650 ELHD-SLLEIARKDA 663 +HD LE AR+DA Sbjct: 635 -VHDYRALETARQDA 648 >gi|229013038|ref|ZP_04170203.1| ATP-dependent DNA helicase recG [Bacillus mycoides DSM 2048] gi|228748292|gb|EEL98152.1| ATP-dependent DNA helicase recG [Bacillus mycoides DSM 2048] Length = 682 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 237/675 (35%), Positives = 380/675 (56%), Gaps = 57/675 (8%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G + S L ++ ++ LL + P + D + ++E+ + VT Sbjct: 8 PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G + Q ++ ++ + G IT + F R K +T+TGK Sbjct: 61 VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRP--YYKQKLNLDETVTITGKW 118 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNF-PLI-----EAVYSLPTGLSVDLFKKIIVEAL---- 179 + + I + ++NF P++ E VYS+ L+V ++ + +A Sbjct: 119 DQHRQTIAV----------SELNFGPVVRQQEVEPVYSVKGKLTVKQMRRFVAQAFKEYG 168 Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 S + VLP+ LL + S EA +H P +D + AR R Y+E Q+ Sbjct: 169 DSIVEVLPD----GLLSRYKLLSRYEALRGLHFPVGQEDLK---QARRRFVYEEFFLFQL 221 Query: 239 ALLLMRKQ-------FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 + +RK KKEI + VE Q+ +PF T +Q + +I++DM Sbjct: 222 KMQTLRKMERENSKGTKKEISL---VE---LQEFTDALPFPLTGAQRRVVDEIMKDMISP 275 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351 RM R+LQGDVGSGKT+VA IA+ AA A Q +M P ILA+QHY+ + + + + Sbjct: 276 YRMNRLLQGDVGSGKTVVAAIALYAAKLAHYQGALMVPTEILAEQHYQSLTETFSHFGMK 335 Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411 VE++T ++ A RR+ L R+ G+ I++GTHAL QD + +++L LVI DEQHRFGV QR Sbjct: 336 VELLTSSVKGARRREILSRLEQGEVDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQR 395 Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471 L +K +P VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D V Sbjct: 396 RVLREKGESPDVLFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRV 455 Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDID 529 + ++ + +G++AY ICP IEE ++ + ++ ++ + L H+ + ++HGR+S + Sbjct: 456 LGFVEKEIKKGRQAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQE 515 Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589 KE +M F ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E Sbjct: 516 KEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQ 575 Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649 S C+L+ P S+ R+ ++ T DGF+++E+DL+ R G+ G KQSG+P+F +A Sbjct: 576 SYCLLIADPK-SETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM 634 Query: 650 ELHD-SLLEIARKDA 663 +HD LE AR+DA Sbjct: 635 -VHDYRALETARQDA 648 >gi|110640048|ref|YP_680258.1| ATP-dependent DNA helicase RecG [Cytophaga hutchinsonii ATCC 33406] gi|110282729|gb|ABG60915.1| ATP-dependent DNA helicase [Cytophaga hutchinsonii ATCC 33406] Length = 696 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 243/667 (36%), Positives = 371/667 (55%), Gaps = 44/667 (6%) Query: 41 FIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTG 99 F DLL+Y+P DR I +I E+ + + G I+ SS + ++ + D TG Sbjct: 32 FEDLLYYYPFRHEDRSKIYAIKDIHEDLPYIQVRGRITGISSQGVGPKKRLIAYVQDDTG 91 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159 + L++F + KN+ V GK ++ +VHP + S+D ++ V Sbjct: 92 ILELVWFQGGAWIEKNIL-PNTIYVVFGKPNLYGRKLNVVHPEMEVY-SEDKTEKGLQPV 149 Query: 160 YSLPTGLSV---------DLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNII 209 Y++ L L +K++ E S+LP +LP I + + S A+A I Sbjct: 150 YNVTEKLKARGMDSKAISKLTEKLVKEIASKLPEILPAAI----IDEYKLISRAQAMEWI 205 Query: 210 HNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI---- 265 H P A E A+ RL ++EL QI LL +K ++K I+ G + I Sbjct: 206 HLPPNAASVE---KAKARLKFEELFLIQIKLL-HQKTYRK-----IHYRGFVFNHIPTLN 256 Query: 266 ---LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 ++PF T +Q+ +K+I +D+ +M R+LQGDVGSGKT+V + M A++ G Sbjct: 257 VFYKEHLPFDLTDAQKRVVKEIYKDVCSGKQMNRLLQGDVGSGKTIVGFLCMLMAIDNGY 316 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 QA ++AP ILA QHYE +K+ + V +TG+ + R + G +I+IGT Sbjct: 317 QACLIAPTEILAAQHYEGLKELAAKVGLTVAKLTGSSKKKERDVIHRDLLDGSLNILIGT 376 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPRTLVLTSL 440 HA+ +D +Q+ L + I+DEQHRFGV QR KL +K T PHVL+MTATPIPRTL +T Sbjct: 377 HAILEDIVQFKNLGICIIDEQHRFGVAQRAKLWKKNTELPPHVLVMTATPIPRTLAMTLY 436 Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDE----VIERLKVVLSEGKKAYWICPQIEEKK 496 GD+DIS I + PAGRKPI T ++ D+ V ++ + EG++ Y + P IEE + Sbjct: 437 GDLDISVIDQMPAGRKPISTS----HKFDKDRLLVFGFIRKQILEGRQIYIVYPLIEENE 492 Query: 497 ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555 + + + +++ F S++ F + I+HGRM DK+ M F G K+++ATTVIEVG+ Sbjct: 493 KLDLKDLMDGFESINRAFPEFPVGILHGRMKPADKDFEMQRFVKGETKIMVATTVIEVGV 552 Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615 +V +AS+++IENAE FGL+QLHQLRGRVGRG + S C+L+ LS N+ TR+ + T Sbjct: 553 NVPNASVMVIENAERFGLSQLHQLRGRVGRGADQSYCVLMTSHKLSANTKTRIETMVRTT 612 Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 +GF IA+ DLK R G++ G +QSG+ IA L+++R+ A +L DP+L Sbjct: 613 NGFEIADVDLKLRGPGDLAGTQQSGVLDLRIADLAQDSQTLQLSRQSAMDLLDSDPELLK 672 Query: 676 VRGQSIR 682 + +R Sbjct: 673 PENRMLR 679 >gi|325268173|ref|ZP_08134806.1| DNA helicase RecG [Prevotella multiformis DSM 16608] gi|324989315|gb|EGC21265.1| DNA helicase RecG [Prevotella multiformis DSM 16608] Length = 698 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 240/674 (35%), Positives = 376/674 (55%), Gaps = 30/674 (4%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITG 74 +GVG + LS+ + + DLL Y P ++DR ISE+S + V I G Sbjct: 11 LQGVGPRKKEILSRELGIRT-----YRDLLEYFPYKYVDRTKVYLISELSPDMPFVQIKG 65 Query: 75 YISQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133 I + + KRR I DG G I L ++ T+ + + R+ V GK Sbjct: 66 RIIRFEETETGKRRKRVIAHFTDGHG-ICDLVWFNGTKYVYQNYQLNREYVVFGKPGVFN 124 Query: 134 NRIIMVHPHYIFHNSQDVNFPLIEAVYSLP--------TGLSVDLFKKIIVEALSR--LP 183 RI HP +N ++ Y T +V+ K ++ LS Sbjct: 125 GRIQFSHPDIDDAAQLQLNDMGMQPFYITTEKMKKAGITSRAVEKLTKTLIGKLSEPLEE 184 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 LP +I L S A IH PR D T AR RL ++EL Q+ +L Sbjct: 185 TLPPFITSHL----HLISRDAALRKIHYPRSVDD---TQRARVRLKFEELFYVQLNILRY 237 Query: 244 RKQFKKEI-GIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +++ G N + + N+PF T +Q+ + +I DM+ +M R+LQGD Sbjct: 238 ASDHRRKYRGYIFNRIGAQFNWFYTHNLPFELTGAQKRVMHEIRADMAGGRQMNRLLQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVAL++M A++ G QA +MAP ILA+QH + ++ + + + +E++TG + Sbjct: 298 VGSGKTLVALMSMLIAIDNGYQACMMAPTEILAEQHLQTLRNFLKGMNLRIELLTGIIKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TA 420 RR+ L+ + G HI++GTHAL +D +Q+++L + +VDEQHRFGV QR +L K+ Sbjct: 358 KRRREVLDGLMDGSIHIVVGTHALLEDKVQFHRLGMAVVDEQHRFGVAQRARLWGKSENP 417 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 PH+L+MTATPIPRTL +T GD+D+S I E P GRKPI+T+ +++ + ++ + Sbjct: 418 PHILVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTLHKYDDQMPSLYNGIRQQIH 477 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539 G++ Y + P I+E + + +++ + F +L + F ++ +HG+M D +KE+ M F + Sbjct: 478 LGRQVYIVYPLIKESERMDLKNLEDGFAALCDIFPEFRLSKVHGKMKDKEKEAEMQKFVS 537 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+ Sbjct: 538 GQTQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQSYCILVTSHR 597 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEI 658 L+K + R+ ++ T DGF IAE DLK R G++ G +QSG+ L IA ++++ Sbjct: 598 LTKETSRRIDIMCETNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQIVQM 657 Query: 659 ARKDAKHILTQDPD 672 AR++A+ I+ DPD Sbjct: 658 AREEAQKIIDDDPD 671 >gi|239636294|ref|ZP_04677296.1| ATP-dependent DNA helicase RecG [Staphylococcus warneri L37603] gi|239597649|gb|EEQ80144.1| ATP-dependent DNA helicase RecG [Staphylococcus warneri L37603] Length = 682 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 223/661 (33%), Positives = 378/661 (57%), Gaps = 22/661 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+ +G+G K L ++ N N DL+ Y P+ + D ++E ++ VT Sbjct: 12 PLNQIKGIGPKRLAVLQEL----NINTVE--DLILYLPTRYEDNTV-IDLNEAEDQSTVT 64 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITL-LFFYRKTEMLKNVFFEGRKITVTGKIK 130 + G + + R K+ ++ +I + F+ + + K + G +TV GK Sbjct: 65 VQGEVYSSPTVAFFGRNKSKLTVHIMVNQIAVKCVFFNQPYLKKKIELHG-TVTVKGKWN 123 Query: 131 KLKNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + K I + + +F N Q ++N +E VY + G+ + I ++L+ + V+ EW+ Sbjct: 124 RSKQEI---NGNRMFFNQQENLNDTQLEPVYRIKEGIKQKQLRDHIRQSLNDV-VIHEWL 179 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFK 248 +L K ++ N +H+P+ +D AR A+ EL ++ + L R + Sbjct: 180 SDELRNKYKLETLEFTLNHLHHPQGKQDL---LRARRTYAFTELFMFELRMQWLNRLEKA 236 Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 + I I+ + + + + ++PF T +Q++++ +I +D+ RM R+LQGDVGSGKT+ Sbjct: 237 SDDAIEIDYDIQKVKSFIDSLPFELTDAQKTSVNEIFRDLKAPIRMHRLLQGDVGSGKTV 296 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VA I M A AG Q+ +M P ILA+QH E + + +T + V ++TG++ RR L Sbjct: 297 VAAICMYALKTAGYQSALMVPTEILAEQHAESLIQLFGDT-MNVALLTGSVKGKKRRILL 355 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428 E++ +G +IGTHAL QD + + + LVI DEQHRFGV QR KL +K +VL MTA Sbjct: 356 EQLENGTIDCLIGTHALIQDDVAFDNVGLVITDEQHRFGVNQRQKLREKGAMTNVLFMTA 415 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488 TPIPRTL ++ G++D+S I + P GRK I T + ++V+ ++ L +G++AY I Sbjct: 416 TPIPRTLAISVFGEMDVSSIKQLPKGRKTIMTSWAKHEQYEQVLTQMTSELKKGRQAYVI 475 Query: 489 CPQIEEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 CP IE + + ++VVE F SL +++ + + ++HG++S+ +K+ VM F +L+ Sbjct: 476 CPLIESSEHLEDVQNVVELFESLQQYYGENKVGLLHGKLSNEEKDEVMHRFSEHEIDILV 535 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 +TTV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E S C+L+ P ++ Sbjct: 536 STTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIE 594 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666 R++++ T DGF ++E DL+ R G+ G+KQSG+P FL+A +LE+AR +A + Sbjct: 595 RMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANIVEDYRMLEVARDEAGEL 654 Query: 667 L 667 + Sbjct: 655 I 655 >gi|291531081|emb|CBK96666.1| ATP-dependent DNA helicase RecG [Eubacterium siraeum 70/3] Length = 677 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 245/672 (36%), Positives = 369/672 (54%), Gaps = 35/672 (5%) Query: 11 APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE-ISEERI 69 +P+ +GVG+K + L K+ T + L ++P +ID + IS+ +++ Sbjct: 10 SPVCYIKGVGEKRAKLLEKL------GITTALQLAEHYPRGYIDFNETTAISDLVNDGEN 63 Query: 70 VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF---YRKTEM-LKNVFFEGRKITV 125 + +++ + +K+L++DGTG++ + FF Y T + L N + Sbjct: 64 HVVKAIVTKKFPAYYGRINIFKVLVSDGTGDMLITFFNSDYSFTRLKLDNEY------CF 117 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 GK+ R M P +F +SQD N + YSL TG+S + I L R Sbjct: 118 YGKMAGDFLRKEMNSP--VFIDSQDPN--KLMPRYSLTTGISQGIMSNCIKNVL-RDFTF 172 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 PE + L++K S S A IH P + ++ A+ RL ++EL Q+ L M+ Sbjct: 173 PEHLTDTLMKKYSLISYDNALRWIHFPENKEQYD---KAKYRLTFEELFLLQLGLKSMKN 229 Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + K+ G P+ E K + ++PF+ T +Q AI + DM + M R+LQGDVGSG Sbjct: 230 RKKRLAGAPM--ENKSIDEYYSSLPFTLTGAQIRAISECCDDMQKSVPMNRLLQGDVGSG 287 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT VA A A G Q+ +MAP ILA+QHY+ + K+ + + ++TG+ A ++ Sbjct: 288 KTAVAAGAAYFAYLNGYQSTLMAPTEILAKQHYDTLYKFLAPLGVTIALLTGSQTPAQKK 347 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + + IA GQ + +GT AL Q S ++ L LVI DEQHRFGV QR L K PH+L+ Sbjct: 348 QIRQLIADGQIDVAVGTQALIQKSTRFSSLGLVITDEQHRFGVGQRAALGSKGNEPHILV 407 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 M+ATPIPRTL + GD+DIS + E P GR PI+T + + + + + + ++ G +A Sbjct: 408 MSATPIPRTLGMIIYGDLDISILDEMPKGRLPIRTYAVDTSYRERLYKFILKYVNNGFQA 467 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCK 543 Y +CP IEE S + E NSL +++ ++HG+M DK++VM FK+ K Sbjct: 468 YIVCPLIEEGI-SEKAAATEYINSLQNTCLANVPTGLLHGKMKQADKDAVMQDFKDNKLK 526 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L+AT+VIEVG+DV +A +++IENAE FGL+QLHQLRGRVGRG E S CIL+ +K+ Sbjct: 527 VLVATSVIEVGVDVPNAVVMVIENAEQFGLSQLHQLRGRVGRGTEQSHCILVTD---NKS 583 Query: 604 SYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 YT R+ + T DGF IA EDLK R G+ G KQ G+P+ IA +L++ + Sbjct: 584 DYTKQRMDTMVKTSDGFEIANEDLKLRGPGDFFGSKQHGLPQLKIADIYADLDILKMTGE 643 Query: 662 DAKHILTQDPDL 673 A IL D L Sbjct: 644 AADDILRDDSRL 655 >gi|160943140|ref|ZP_02090377.1| hypothetical protein FAEPRAM212_00625 [Faecalibacterium prausnitzii M21/2] gi|158445609|gb|EDP22612.1| hypothetical protein FAEPRAM212_00625 [Faecalibacterium prausnitzii M21/2] Length = 686 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 227/645 (35%), Positives = 347/645 (53%), Gaps = 30/645 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID--RHYRPKISEISEERI 69 P+ +GVG K + K+ DLL ++P +ID + Y + E + Sbjct: 14 PVRYLKGVGPKTAERFEKL------GIVTLADLLCHYPRRYIDFSKPYSIAEAPADTECV 67 Query: 70 VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF-----YRKTEMLKNVFFEGRKIT 124 V + RR +I D + + +F +K ++ + +F+G Sbjct: 68 VKAEVFAKPGGRILPGGRRMERITAGDDVASLEITWFNNPYATQKLQLGQEYYFQG---I 124 Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184 VTG + + + MV+P ++ + EAVY GL+ + + I + L + Sbjct: 125 VTGGMLRRQ----MVNPQ--VRTAEQIQAAPFEAVYPQTEGLTSSVISRCIRQLLPHAEL 178 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LP+ + ++LQK AEA IH P E + AR RL Y+ELL Q+ + MR Sbjct: 179 LPDPLPPEMLQKYRLLPKAEAVRAIHCPATE---EQAAAARRRLIYEELLVLQLGIGRMR 235 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 + G P+ +++PFSPT +Q A+++IL DM+ + M R+LQGDVGS Sbjct: 236 NRGAAATGAPMRRADP--SPFWQSLPFSPTGAQRRAVEEILTDMASETAMNRLLQGDVGS 293 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKTLVA A+ A + AG QA ++AP ILA QH E + + + V ++TG M A R Sbjct: 294 GKTLVAAAAIWACIRAGYQAALLAPTEILAAQHAEGLNRLLAPFGMRVALLTGGMKAAAR 353 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424 R L I +A +++GTHAL + +++ +L L ++DEQHRFGV+QR L +KA PH+L Sbjct: 354 RTTLAAIRKDEADLVVGTHALMSEGVEFARLGLAVIDEQHRFGVRQRGALAEKAANPHLL 413 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 +M+ATPIPRTL L GD+DIS + E P GR P+KT I R ++ L + +G++ Sbjct: 414 VMSATPIPRTLGLLIYGDLDISVLDELPPGRTPVKTRCITGKRRQDLYRFLDSEIDKGRQ 473 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542 Y +CP IE+ + +V + + + + ++HG++ +K +VM+ FK G Sbjct: 474 VYLVCPAIEDVPDGGLNAVKTYYEDIAKTLLPDRRVGLMHGKLKPKEKAAVMEDFKAGRL 533 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 L++TTVIEVG+DV +AS+++IENAE +GL+ LHQLRGRVGRG S C L+ S+ Sbjct: 534 DALVSTTVIEVGVDVPNASVMVIENAERYGLSALHQLRGRVGRGAAESWCFLVSD-NTSE 592 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 RL L +T DGF +A+ DL+ R G+ G +Q G+P IA Sbjct: 593 AVQKRLKFLCSTTDGFAVAQYDLETRGPGDFFGSRQHGLPTLQIA 637 >gi|323486979|ref|ZP_08092293.1| hypothetical protein HMPREF9474_04044 [Clostridium symbiosum WAL-14163] gi|323692024|ref|ZP_08106272.1| ATP-dependent DNA helicase RecG [Clostridium symbiosum WAL-14673] gi|323399691|gb|EGA92075.1| hypothetical protein HMPREF9474_04044 [Clostridium symbiosum WAL-14163] gi|323503947|gb|EGB19761.1| ATP-dependent DNA helicase RecG [Clostridium symbiosum WAL-14673] Length = 696 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 220/678 (32%), Positives = 378/678 (55%), Gaps = 21/678 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEISEERIV 70 P+++ +G+G K + +++ DLL Y+P ++ D P+ ISE+ E + Sbjct: 17 PVTSLKGIGDKTAGLFARL------GVQTVEDLLHYYPRAY-DTFREPQPISELLPETMA 69 Query: 71 TITGYISQHSSF-QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 ++G +++ + + + + + D +G +TL ++ L+ G G++ Sbjct: 70 AVSGMLTKTADVVKFGHLQVTTVTVRDISGILTLTWY--NMPYLRGTLKAGEHFIFRGRL 127 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + + R+ M P + ++ VY GL + + EAL +++ Sbjct: 128 VRKRGRLTMEQPEIYRPEAYARLVHSMQPVYGQTKGLGNKTIARTVAEALEVKETEKDYL 187 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR-KQFK 248 L +K A IH P+ + ++ R+RL +DE +++ L++ K+ Sbjct: 188 PAALREKYQLAEYNFALEHIHFPKDETELLFS---RKRLVFDEFFMFLLSVRLLKDKKVD 244 Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 K P ++ +I + + + +P+S T +Q+ + ++ +D+S + M R++QGDVGSGKT+ Sbjct: 245 KASPCPFKIDNQI-RGLEQRLPYSLTNAQKKVLDEVYRDLSGGHIMNRLIQGDVGSGKTI 303 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE--IITGNMPQAHRRK 366 +A++A+ A G Q +M P +LA+QH+E + + + ++TG+M +R Sbjct: 304 IAVLALLQAAGNGYQGALMVPTEVLARQHFESMNELFTGLGLSARPVLLTGSMTAKEKRL 363 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426 A ERIA+ +A II+GTHAL Q+ + Y KL LVI DEQHRFGV QR L K PH+L+M Sbjct: 364 AYERIANHEADIIVGTHALIQEKVIYDKLALVITDEQHRFGVGQREMLGNKGMEPHILVM 423 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486 +ATPIPRTL + GD+DIS I E PA R+PIK ++ + + ++ + EG++AY Sbjct: 424 SATPIPRTLAIIIYGDLDISVIDELPANRQPIKNCVVGRDYRENAYRFIEKEVKEGRQAY 483 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKL 544 ICP +E + +VV+ +L EH + I + +HG+M +K +M+ F ++ Sbjct: 484 VICPMVEASEMLEAENVVDYTKTLREHLSGDIRVEYLHGKMKAKEKNRLMELFAANEIQV 543 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 L++TTVIEVGI+V +A++++IEN+E FGLAQLHQLRGRVGRG+ S CI++ + +++ Sbjct: 544 LVSTTVIEVGINVPNATVMMIENSERFGLAQLHQLRGRVGRGKAQSYCIMV-NCSGEEDA 602 Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 RL +L + DGF IA EDLK R G++ G++QSG +F +A +L+ ++ K Sbjct: 603 QKRLEILNKSNDGFFIASEDLKLRGPGDLFGVRQSGDLEFRLADIFTDADILKTVSEEVK 662 Query: 665 HILTQDPDLTSVRGQSIR 682 ++ QDP L+S + ++ Sbjct: 663 MLMDQDPLLSSGENRELK 680 >gi|304316960|ref|YP_003852105.1| ATP-dependent DNA helicase RecG [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778462|gb|ADL69021.1| ATP-dependent DNA helicase RecG [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 682 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 238/658 (36%), Positives = 361/658 (54%), Gaps = 17/658 (2%) Query: 17 RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76 +GVG K +L L KI ET D L Y+P + +R I + T YI Sbjct: 11 KGVGPKRALLLKKI-----GIET-VKDALEYYPKEYENREKIIPIDMLKIGEKQTFKAYI 64 Query: 77 SQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 + + +++++ KI + DG+G + L+++ +K F G + + GK+ + Sbjct: 65 AGKAREYKVKRLTITKIPVKDGSGAVELVWY--NQPYIKGNFKLGEEYIINGKVFYKYGQ 122 Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLL 194 I + +P +S ++N I +Y L GLS + + II L L + E +++ L Sbjct: 123 IYVENPVMDRSDSLNINAGRIVPIYKLTEGLSQKVIRSIIFNLLKEYLNDIEEIFDENFL 182 Query: 195 QKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 ++ + I A IH P +K E + + RL + E Q+ L L++ ++ + Sbjct: 183 KEYNLLDIKSAIKNIHFPESSKMLERS---KYRLVFQEFFILQLGLTLIKNRYNTDKA-G 238 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 I + + F T++QE A+ +IL DM M R+LQGDVGSGKT++A AM Sbjct: 239 IKFRRVDLKDFFSKLKFHLTQAQERALNEILDDMYSGKVMNRLLQGDVGSGKTVIAAAAM 298 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 AV+ G QA IMAP ILA+QHY +K+ I +E++TG++ + +E I +G Sbjct: 299 YVAVKNGYQASIMAPTEILAKQHYFTLKELYDELDIKIELLTGSIGTKKKNIIIEEIKNG 358 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 + I++GTH+L ++++Q+ L L I DEQHRFGV+QR +K VL+MTATPIPRT Sbjct: 359 EIDILVGTHSLIEENVQFKNLGLAITDEQHRFGVRQRAVFKEKGEQTDVLVMTATPIPRT 418 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 L L GD+DIS I E P GRK I+T I D + + + +G++AY +CP IE+ Sbjct: 419 LALMLYGDLDISVIDELPPGRKKIETYAISATLRDRAYKFVINEVKKGRQAYIVCPLIED 478 Query: 495 KKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552 N +S + +++ + ++HG MS DK VM+ F NG +L++TTVIE Sbjct: 479 SNLINAKSAEVVYEEIYKGVFKEFRVGLVHGGMSSNDKNKVMNEFVNGKIDILVSTTVIE 538 Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612 VG++V +AS+I+IENAE FGLAQLHQLRGRVGR S CIL+ + S RL V+ Sbjct: 539 VGVNVPNASVIVIENAERFGLAQLHQLRGRVGRSSNQSYCILIAY-SYSDVVKKRLKVMT 597 Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670 T DGF IAE+DL+ R GE G+KQ G+P+ +A +L++A+K + L D Sbjct: 598 ETNDGFKIAEKDLEIRGPGEFFGVKQHGLPELKLANIFEDIEILKLAQKAVEKFLNND 655 >gi|288818616|ref|YP_003432964.1| ATP-dependent DNA helicase [Hydrogenobacter thermophilus TK-6] gi|288788016|dbj|BAI69763.1| ATP-dependent DNA helicase [Hydrogenobacter thermophilus TK-6] gi|308752207|gb|ADO45690.1| ATP-dependent DNA helicase RecG [Hydrogenobacter thermophilus TK-6] Length = 784 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 236/666 (35%), Positives = 372/666 (55%), Gaps = 32/666 (4%) Query: 45 LFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLL 104 L+Y P + DR I + V + + + + + ++ P + DGTG + L Sbjct: 121 LWYLPVRYEDRRLNNSIKTTKPGQKVALKLRVLE-TGYDPSEKYPAYVKCEDGTGILYLR 179 Query: 105 FFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT 164 F Y+ + L F +G I G++K+ K MVHP F Q+ F I Y + + Sbjct: 180 FRYKDQKPL-YAFKKGSYIVAYGRLKEFKGEKYMVHPEVSF---QEEEFGKILPFYYIRS 235 Query: 165 -----GLSVDLFKKIIVEALSRL----PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215 +S + I +A+ +L +PE++ ++LLQK FP+IAE+ + H+P+ Sbjct: 236 KGEIKAISSKTRHRKIRQAIGKLLEYVKYMPEYLPEELLQKYQFPNIAESLYMAHSPQDG 295 Query: 216 KDFEWTS---PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272 + S P + RL Y+EL Q+ L + ++Q + ++ K ++++ +PF Sbjct: 296 DEDALNSRATPFQRRLIYEELFLFQLLLQIRKRQISNLEAVKLSHPEKHTEELISTLPFK 355 Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332 T++Q +++I +D+ M R+LQGDVGSGKT+VA+ A G Q IMAP I Sbjct: 356 LTEAQRRVLEEIAKDLKTGKPMNRLLQGDVGSGKTVVAMAVSYAFAREGYQCAIMAPTEI 415 Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392 LAQQHYE K++ + + V ++T ++ + R I+ G ++IGTHAL QD +++ Sbjct: 416 LAQQHYENFKRFLEPLGVKVGLLTSSVKGSARNSVYRHISAGNISVLIGTHALLQDRLEF 475 Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPRTLVLTSLGDIDISKITE 450 L V++DEQHRFGV QR ++ K PH L+M+ATPIPRTL L+ GD+DIS I + Sbjct: 476 ENLAFVVIDEQHRFGVMQRREMLSKGKNLFPHCLVMSATPIPRTLALSLYGDLDISIIDQ 535 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P GRKP+ T +I +++++ I ++ L +G K Y + P IE ++ +S E + Sbjct: 536 MPEGRKPVITKLIFESQMEKCISFIRSELEKGGKVYVVYPLIEGSEKVELKSATESYMLW 595 Query: 511 HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 F + ++HGR+ D +KE+VM FK + +L++TTVIEVG+DV A++++IE+A Sbjct: 596 KSLFPDRKVLLMHGRLKDQEKEAVMREFKE-SADILVSTTVIEVGVDVPSATVMVIESAH 654 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS----YTRLSVLKNTEDGFLIAEEDL 625 FGL+Q+HQLRGRVGR E C L+ P KN+ RL VL T DGF IAEEDL Sbjct: 655 MFGLSQIHQLRGRVGRSERQGYCFLVV-PDSLKNTDAEAIKRLRVLVQTSDGFKIAEEDL 713 Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDS--LLEIARKDAKHILTQDPDLTSVRGQSIRI 683 K R GE+LG QSG F +A + LLE+A++DAK ++ + + +++ ++ Sbjct: 714 KMRGPGELLGASQSGYFGFTVASLARAEDRYLLELAKEDAKAMIEKLNHMENLK----KV 769 Query: 684 LLYLYQ 689 L Y Y+ Sbjct: 770 LAYRYK 775 >gi|229174521|ref|ZP_04302053.1| ATP-dependent DNA helicase recG [Bacillus cereus MM3] gi|228609081|gb|EEK66371.1| ATP-dependent DNA helicase recG [Bacillus cereus MM3] Length = 682 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 228/663 (34%), Positives = 374/663 (56%), Gaps = 33/663 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G + S L+++ ++ LL + P + D + ++E+ + VT Sbjct: 8 PVTDVKGIGGETSELLNEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G + Q ++ ++ + G IT + F R K +T+TGK Sbjct: 61 VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRP--YYKQKLNLNETVTITGKW 118 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184 + + I + H+ V +E VYS+ L+V ++ I +A S + V Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQAFKEYGESIVEV 174 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LP+ LL + EA +H P +D + AR R Y+E Q+ + +R Sbjct: 175 LPD----GLLSRYKLLPRYEALRSLHFPAGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227 Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 K + + G + Q+ + +PF T +Q + +I++DM+ RM R+LQGDVG Sbjct: 228 KMERENSKGTKKEIPSAELQEFIDALPFPLTGAQRRVVDEIMKDMTSPYRMNRLLQGDVG 287 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA I + AA A Q +M P ILA+QHY+ + + + + VE++T ++ Sbjct: 288 SGKTVVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMNVELLTSSVKGVR 347 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L ++ G+ I++GTHAL QD + +++L LVI DEQHRFGV QR L +K +P V Sbjct: 348 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D V+ ++ + +G+ Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541 +AY ICP IEE ++ + ++ ++ + L H+ + ++HGR+S +KE +M F Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+ P S Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660 + R+ ++ T DGF+++E+DL+ R G+ G KQSG+P+F +A +HD LE AR Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645 Query: 661 KDA 663 +DA Sbjct: 646 QDA 648 >gi|319778250|ref|YP_004129163.1| ATP-dependent DNA helicase RecG [Taylorella equigenitalis MCE9] gi|317108274|gb|ADU91020.1| ATP-dependent DNA helicase RecG [Taylorella equigenitalis MCE9] Length = 680 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 229/598 (38%), Positives = 342/598 (57%), Gaps = 26/598 (4%) Query: 94 LNDGTGEITLLF--FYRKTEMLKNVFFEGRKITVTGKIK-KLKNRIIMVHPHYIFHNSQD 150 L+D +G ++L + FY L G + V G +K K ++HP + Sbjct: 73 LSDDSGTLSLRWIHFYPN---LVGYLKSGPVVRVKGLVKGSPKWGCTIIHPEI-----KK 124 Query: 151 VNFPL---IEAVYSLPTGLSVDLFKKII---VEALSRLPVLPEWIEKDLLQKKSFPSIAE 204 + PL + +YS GL+ D+ +K I +E + + +L K S P+ E Sbjct: 125 ITDPLPANLTPIYSTTAGLTQDVLRKKIKLNLELAKTNGDFRDTLPLQILNKYSLPAFEE 184 Query: 205 AFNIIHNPR--KAKDFE-WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK- 260 A +HNP+ +AK E T PA RL +DELLA Q+ L L R + ++ IP+ + + Sbjct: 185 AIFTLHNPKLSEAKSIENKTHPAWHRLVFDELLAQQLTLQLARDKREQLKAIPLELNDRS 244 Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320 + + ++ T +Q+ I +I +D+ + M R+LQGDVGSGKT+VA +A + + Sbjct: 245 LFEGVINEFSLELTGAQKRVISEITEDLKKPKPMNRLLQGDVGSGKTIVAALAASLVISN 304 Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380 G Q +MAP ILA+QHY + K+ I + + G++ + E I A+ +I Sbjct: 305 GYQVALMAPTEILAEQHYLKLSKWFNPLGIEIVRLYGSLSAKEKNSVYEAILKSTANFVI 364 Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLV 436 GT AL Q+ +++ L L+IVDEQHRFGV QRL L +K PH L M+ATPIPRTL Sbjct: 365 GTQALIQEKVEFANLGLLIVDEQHRFGVIQRLTLNKKGELGEYIPHQLSMSATPIPRTLA 424 Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496 ++ L DID+S I E P GR PI T +I R D+V ++ + +G +AYW+CP +EE + Sbjct: 425 MSYLADIDVSTIDELPPGRTPILTKLIKKERRDQVAFHIRDEVKKGLQAYWVCPLVEESE 484 Query: 497 ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555 +S V+ +N + + ++HG++ +K +M FK+ C++L+ATTVIEVG+ Sbjct: 485 ALQLQSAVDTYNWIRNLLPDIKVGLVHGQLKSSEKNDIMQKFKDNECQILVATTVIEVGV 544 Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615 DV +ASI++IE+AE FGLAQLHQLRGRVGRG+ S+CIL+Y PL+ RL + T Sbjct: 545 DVPNASIMVIEHAERFGLAQLHQLRGRVGRGQNSSTCILIYQEPLTVVGKERLKAMYETT 604 Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IA DL+ R GE+LG KQSG+ AQ ++ + LE R +AK+++ PDL Sbjct: 605 DGFEIARRDLEIRGPGELLGQKQSGVAMLRFAQIQVDTATLEFVRDEAKNLIRNYPDL 662 >gi|325283038|ref|YP_004255579.1| ATP-dependent DNA helicase RecG [Deinococcus proteolyticus MRP] gi|324314847|gb|ADY25962.1| ATP-dependent DNA helicase RecG [Deinococcus proteolyticus MRP] Length = 786 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 235/665 (35%), Positives = 366/665 (55%), Gaps = 26/665 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99 DLL Y+P DR P + + E + VT+ G + S F+ + IL L G G Sbjct: 137 DLLHYYPHRHEDRRALPSLDHVEEGQKVTVQGVVV--SRFKRTPKPRMTILEATLETGGG 194 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL--IE 157 + +F + ++ EG ++ VTG++K+ + H +S + + I Sbjct: 195 RVKATWFNQP--WMERQLREGARVIVTGRVKRFGRTAQLAAEHLESLDSAEGSLSTGRIV 252 Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 VY G+S + ++ AL P L +++ ++ +A+A IH P D Sbjct: 253 GVYDAKEGISQEFLRRAAWRALQAAP-LDDYLPAHWRREYGLTPLADALQGIHFP---AD 308 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRK----QFKKEIGIPINVEGKIAQKILRNIPFSP 273 S A RL +DE L ++ +LL + Q K+ P +++ + N+PF+ Sbjct: 309 EGQLSRAMARLRFDEYLFLELRMLLQGEEAVLQGKRFEAHPEDID-----RFEGNLPFNF 363 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T +Q + +I+++M +M R++QGDVGSGKT VA A+ AV G Q +MAP IL Sbjct: 364 TGAQRRVLGEIVEEMRSDRQMARLVQGDVGSGKTAVAACALYLAVRDGYQGALMAPTEIL 423 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QHY + KY + + V ++ G M + RIA G+ I++GT AL Q+++Q+ Sbjct: 424 ARQHYANLCKYLEPLDVRVGLLIGAMTPKAKLDMQGRIALGEVDIVVGTQALIQENVQWD 483 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L L ++DE+HRFGV QR KL A+ P VL+M+ATPIPR+L LT+ GD+++S I E P Sbjct: 484 NLGLAVIDEEHRFGVMQRRKLL--ASRPDVLVMSATPIPRSLALTAYGDLELSVIDELPP 541 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 GR PI+T +I + + + +G++AY + IEE + + E +L E Sbjct: 542 GRTPIETKLIQDGYRAQAYGFVMGQIRQGRQAYVVTALIEENENLELLAATELAENLAEM 601 Query: 514 FTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 + I ++HG+M+ +K+ +M SF+ LL++TTVIEVG+DV +A++++IENAE FG Sbjct: 602 LPEARIGLLHGKMTAAEKDDIMASFRRHDFDLLVSTTVIEVGVDVPNATVMVIENAERFG 661 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 L+QLHQLRGRVGRG S C+L+ +SK + RL +++ + DGF+IAE DLK R GE Sbjct: 662 LSQLHQLRGRVGRGSLQSYCVLIAG-EMSKKTEQRLRIIEGSTDGFVIAEADLKLRGPGE 720 Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692 I G +QSG+P + ++E AR+ AKHIL+ DP L R Q +R L + Sbjct: 721 IRGTRQSGIPDLRLGDLANDAEVIEQARQLAKHILSNDPRLEHPRLQYLRSELQNRSQSV 780 Query: 693 AFQFI 697 AF+ + Sbjct: 781 AFREV 785 >gi|313205993|ref|YP_004045170.1| ATP-dependent DNA helicase recg [Riemerella anatipestifer DSM 15868] gi|312445309|gb|ADQ81664.1| ATP-dependent DNA helicase RecG [Riemerella anatipestifer DSM 15868] gi|315022306|gb|EFT35334.1| ATP-dependent DNA helicase RecG [Riemerella anatipestifer RA-YM] gi|325336566|gb|ADZ12840.1| RecG-like helicase [Riemerella anatipestifer RA-GD] Length = 696 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 235/691 (34%), Positives = 388/691 (56%), Gaps = 30/691 (4%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV--TIT 73 +GVG + + + ++ DLL ++P ++D+ +++++ + V + Sbjct: 10 LKGVGPERAKLIKNLLGISTVE-----DLLTFYPIRYLDKSRLYRVADLQKNADVEMQLK 64 Query: 74 GYISQHSSF---QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 G I + + QKR K D TG I L++F R T+ + +++ + GK+ Sbjct: 65 GKIRELQEVVYGKGQKRLSAKFY--DETGVIELVWF-RYTKWMVEQMPINKEVFIFGKVN 121 Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS-----LPTGLSVDLFKKIIVEALSRLPV- 184 M HP + ++ L+ +YS + G++ F+ II E + + Sbjct: 122 WFNGVFSMPHPEIELDEKKALSETLL-PIYSGSEKLIKRGVNNKFFQTIIREVIKQASFF 180 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 L E + ++L EA+ IH P ++ W + A +RL ++E Q+ L + Sbjct: 181 LEENLPSNILSSLKLIGRREAYQNIHFP---QNISWINEANKRLKFEEAFFFQLGYGL-K 236 Query: 245 KQFKK--EIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 KQ++K +GIP + G +N +PF T +Q+ +K+I DM + +M R+LQGD Sbjct: 237 KQYQKVSNVGIPFPLVGDYFNNFYQNKLPFELTNAQKRVLKEIRNDMKKPIQMNRLLQGD 296 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VAL++M A++ G QA +MAP ILAQQHY I + + T I + ++TG+ + Sbjct: 297 VGSGKTMVALLSMLLALDNGTQACLMAPTEILAQQHYNSIVQLLEGTGIEIRLLTGSTKK 356 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATA 420 + R+ E + G+ I++GTHA+ +D++++ L L I+DEQHRFGV QR KL K Sbjct: 357 SERKDIHEGLESGRLSILVGTHAILEDAVKFKNLGLGIIDEQHRFGVAQRAKLWSKNKIP 416 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 PH+L+MTATPIPRTL ++ D+D+S I E P GRKPI T V + K + Sbjct: 417 PHILIMTATPIPRTLAMSFYSDLDVSVIDELPTGRKPIITAHRREKDRLSVYQFAKEEIQ 476 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539 +G++ Y++ P IEE + ++++++E F + ++F + ++HG+M +K+ M+ F + Sbjct: 477 KGRQIYFVYPLIEESETLDYKNLMEGFEIVLDYFKDYEVTMLHGKMKPHEKDEAMNYFAS 536 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G ++++ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG E S CIL+ Sbjct: 537 GKAQIMVATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGRGAEQSYCILMSSDK 596 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 LS R+ + T DGF I+E D++ R G+ILG +QSG+ F S++++A Sbjct: 597 LSTEGRKRIKTMCETNDGFKISEVDMQLRGPGDILGTQQSGIVDFKKLDLTKDASVIKVA 656 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690 +K ++ DP+LT +R Y+ QY Sbjct: 657 QKIVTLLVQSDPNLTHPAHAQLRN-YYIKQY 686 >gi|328957308|ref|YP_004374694.1| ATP-dependent DNA helicase RecG [Carnobacterium sp. 17-4] gi|328673632|gb|AEB29678.1| ATP-dependent DNA helicase RecG [Carnobacterium sp. 17-4] Length = 682 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 232/648 (35%), Positives = 366/648 (56%), Gaps = 20/648 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98 DLL ++P + D + + EI ++ VT+ G + S F +K R +++++ Sbjct: 33 DLLSHYPIRYEDIQEK-DLLEIEDQEKVTLKGNVVSEAVVSRFGPKKNRLSFRLIIEHAV 91 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 IT+ FF + LK+ G +I V GK + + + S+ +F E+ Sbjct: 92 --ITVTFFNQA--YLKSKIVTGEEIAVFGKWDAKRKSLTGMKILGSKSGSEQGDF---ES 144 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 VYS + ++I EA +PE I +L K S +A +H P Sbjct: 145 VYSANKHIKQSTILQLITEAFKIYQEHIPEVIPAELRTKYRLISHHDAVYAMHFPASE-- 202 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKS 276 E AR + ++E L Q+ + ++RK+ K G +N + + +PF T + Sbjct: 203 -EQKKQARREVVFEEFLLYQMRMQIVRKKQKAMGKGNILNYNVNDLRNFIETLPFELTTA 261 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q+ + +I D+ Q M R+LQGDVGSGKT+VA IA+ AA G Q+ +M P GILA+Q Sbjct: 262 QKRVVNEICSDLRQPIHMHRLLQGDVGSGKTIVAAIALYAATNVGVQSALMVPTGILAEQ 321 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 H E + + ++ + ++TG+ RR LE++A+G+ ++IGTHAL Q + + +L Sbjct: 322 HMESLTELFDPLEVRIALLTGSTKTKERRIILEQLANGELDVLIGTHALIQQDVYFSRLG 381 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 LVI DEQHRFGV QR L K VL MTATPIPRTL +T+ G++D+S I E PAGR Sbjct: 382 LVITDEQHRFGVNQRKLLRDKGKDADVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRI 441 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 PI+T I ++ +E ++ L +G +AY ICP IEE + + ++ + + L ++ Sbjct: 442 PIQTTWIKPKNFEKTLEFIESQLKKGSQAYVICPLIEESESIDVKNATDIYEKLTAYYGD 501 Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + ++HG+M DKE++M++FK ++L++TTVIEVG++V +A+ +II +A+ FGL+ Sbjct: 502 RFQVGLLHGKMKSADKENIMENFKEKKLQVLVSTTVIEVGVNVPNATTMIIYDADRFGLS 561 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG++ S CIL+ +P ++N R+ ++ T DGFL++E+DL+ R G++ Sbjct: 562 QLHQLRGRVGRGDKESYCILVANPK-TENGMERMKIMTETTDGFLLSEKDLELRGPGDLF 620 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682 G KQSG+P F I LE AR++A ++ Q LT+ Q IR Sbjct: 621 GNKQSGIPDFKIGDIVGDFGALEAARQEAVQLINQKDFLTNELYQPIR 668 >gi|187478413|ref|YP_786437.1| ATP-dependent DNA helicase RecG [Bordetella avium 197N] gi|115422999|emb|CAJ49529.1| ATP-dependent DNA helicase [Bordetella avium 197N] Length = 684 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 240/664 (36%), Positives = 361/664 (54%), Gaps = 37/664 (5%) Query: 34 GNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTIT----GYISQ------HSSFQ 83 G+ E R +L P F+ + P E E RI+ I G+ +Q S Sbjct: 10 GSLIERRLRNLGLVEPEDFV--LHLPLRYE-DETRIIPIAEARPGFPAQVEGEILRSDVL 66 Query: 84 LQKRRPYKILLNDGTGEITL--LFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHP 141 + RR ++ D +GE+ L L FY + N GR++ G ++ MVHP Sbjct: 67 YRPRRQLTAVIADDSGELHLRWLNFYPSQQKQLN---SGRRLRARGDVRGGMFGREMVHP 123 Query: 142 HYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP 200 ++ D P + VY GL+ + ++ + +AL+ L L + + + + Q+ Sbjct: 124 RM---SNADGALPTALTPVYPSTDGLTQPVLRRAVTQALAGL-ALDDTLPEAVRQRYGLL 179 Query: 201 SIAEAFNIIHNPRKA---KDF-EWTSPARERLAYDELLAGQIALLLMRKQFKKEIG---I 253 EA ++H P +D E T PA R+ +DELLA Q++L R + Sbjct: 180 PFNEAVRLLHAPPPGIAERDLSERTHPAWRRIKFDELLAQQLSLAAARAARHDKRAPSMA 239 Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313 P + ++ +PF+ T +Q+ + +I D+++ M R+LQGDVGSGKT+VA +A Sbjct: 240 PDTKPAGLTARLYAALPFTLTGAQQRVVAEIATDLARPYPMHRLLQGDVGSGKTVVAAVA 299 Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373 A A+ G Q +MAP ILA+QH+ + + + + V ++G++ +RRKA E I Sbjct: 300 AAQAIANGFQVALMAPTEILAEQHFRKLAAWLEPLGVSVAWLSGSLTLKNRRKAAEAIEA 359 Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA------TAPHVLLMT 427 G+ +++GT AL QD + + +L L IVDEQHRFGV QRL L++K PH L M+ Sbjct: 360 GEVQLVVGTQALIQDHVNFPRLGLSIVDEQHRFGVGQRLALSRKGEEAEGRVVPHQLSMS 419 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T D+D+S I E P GR P+ T ++ R DE+I + G++AYW Sbjct: 420 ATPIPRTLAMTFFADLDVSVIDELPPGRTPVLTKLLSEGRRDELIAHIAQAARAGRQAYW 479 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 +CP +EE + ++ V+ + ++ + ++HGR+ +K +VM++F+ G LL+ Sbjct: 480 VCPLVEESEALQLQTAVDTYETMRVELPDLRVGLVHGRLPQTEKAAVMEAFRAGDVDLLV 539 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRGE S C+LLY PLS+ + Sbjct: 540 ATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGEAESVCVLLYQTPLSQVARE 599 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666 RL + T DGF IA DL+ R GE LG +QSGM A + L E AR A + Sbjct: 600 RLRAMFETSDGFEIARRDLELRGPGEFLGTRQSGMELLRFANIDQDIELAEAARDTAAWL 659 Query: 667 LTQD 670 D Sbjct: 660 RQHD 663 >gi|333029286|ref|ZP_08457347.1| ATP-dependent DNA helicase RecG [Bacteroides coprosuis DSM 18011] gi|332739883|gb|EGJ70365.1| ATP-dependent DNA helicase RecG [Bacteroides coprosuis DSM 18011] Length = 698 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 236/671 (35%), Positives = 377/671 (56%), Gaps = 29/671 (4%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + + L++ +N + + DL++Y P ++DR ISE++ + + G I Sbjct: 14 GVGPRRAEILNQELNIFSLH-----DLIYYFPYKYVDRSRVYTISELTGSMPYIQLKGQI 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 + +++ DGTG I L++F R + + + + + GK ++ Sbjct: 69 LHFNVVGEGRKKRLVARFTDGTGFIDLVWF-RGVKYISSSLKLRQDYLIFGKPTVFNGQV 127 Query: 137 IMVHPHYIFHNSQDVNF------PLIEAVYSLPTG----LSVDLFKKIIVEALSRLPVLP 186 + HP N+ D+ P + G S++ K +V+ L + P+ P Sbjct: 128 NIAHPD--MENATDIQLSSLGLKPYYNTTEKMKRGSMNSQSIEKLMKSVVDLL-KYPI-P 183 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + + ++QK + EA IIH P A A+ RL ++EL Q+ +L K+ Sbjct: 184 ETLPEHIIQKYKLMPLQEALKIIHFPGDALSLR---KAQYRLKFEELFYIQLNILSYSKE 240 Query: 247 FK-KEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 + K G G+ +N+PF T +Q+ +K+I QD+ +M R+LQGDVGS Sbjct: 241 RQLKYKGFTFPKIGEYFNNFFFKNLPFELTGAQKRVLKEIRQDVGTGVQMNRLLQGDVGS 300 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKTLVAL++M A++ G QA +MAP ILA QHYE I ++ I VE++TG+ + R Sbjct: 301 GKTLVALMSMLMALDNGYQACMMAPTEILASQHYETILEFIHGLDIRVELLTGSTRKKDR 360 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAPHV 423 + L + G+ IIIGTHAL +D++ + L ++DEQHRFGV QR KL + PH+ Sbjct: 361 ERILSGLISGEVQIIIGTHALLEDTVTFKALGFAVIDEQHRFGVAQRAKLWIKNDNPPHI 420 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL +T GD+D+S I E P GRKPI+T+ NR + + +K L+ G+ Sbjct: 421 LVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTIHQFDNRKKSLYKMVKDQLAMGR 480 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542 + Y++ P IEE ++ + +++ + + + + F + +HG+M +K+ M+ F +G Sbjct: 481 QIYFVYPLIEESEKIDLKNLEQGYELITQEFPEYRVVKVHGKMKPAEKDEQMNLFASGQA 540 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 +++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S C+L+ LS+ Sbjct: 541 HIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCVLVTGYKLSE 600 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARK 661 + R+ ++ + DGF IAE DLK R G++ G +QSG+ L +A LL+ R Sbjct: 601 ITRKRIEIMVESNDGFEIAEADLKLRGPGDLEGTQQSGVAFDLKVADLAKDGQLLQFVRT 660 Query: 662 DAKHILTQDPD 672 A+ I+ +D + Sbjct: 661 VAQDIIDKDKN 671 >gi|326790886|ref|YP_004308707.1| ATP-dependent DNA helicase RecG [Clostridium lentocellum DSM 5427] gi|326541650|gb|ADZ83509.1| ATP-dependent DNA helicase RecG [Clostridium lentocellum DSM 5427] Length = 687 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 242/654 (37%), Positives = 369/654 (56%), Gaps = 29/654 (4%) Query: 43 DLLFYHPSSFIDRHYRPKIS--EISEERIVTITGYISQHSSFQLQKRRPYKILLN----D 96 D++ ++P + DR ++ E+ E + V +T S Q+ K+ KIL++ D Sbjct: 31 DMIEHYPREYEDRRQITPLAACELDEPQNVLVTVC----SKPQIAKKG-NKILVSFRVKD 85 Query: 97 GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFP 154 T I + FF + ++N F G K + GKIK ++ M P Y + S+ Sbjct: 86 ETSSIMVTFFGQA--YMRNNFVMGEKYLLYGKIKHKYGQLEMDSPEYQKVADPSKLGTVA 143 Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213 I +Y LS + + +I L+ LP + + + + ++++ S EA IH P Sbjct: 144 KITPIYPTTQKLSQKVIRGLIEHCLNEVLPEVKDHLPERIIKQYHLVSKEEALRGIHFP- 202 Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK-KEIGIPINVEGKIAQKILRNIPFS 272 KD E AR+RL ++EL Q++L ++ F K +GI +V ++ + + ++PF Sbjct: 203 --KDSEHFFEARKRLVFEELFMLQLSLYQLKADFATKLMGIAHDVTSEL-KAFMASLPFE 259 Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332 T +Q+ +++I+ DM M R++QGDVGSGKT++A I++ V+ G Q +MAP + Sbjct: 260 LTGAQKRVMREIVGDMKSPYAMNRLVQGDVGSGKTVIAAISLFLVVKDGFQGALMAPTEV 319 Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392 L QHYEFIK + I V ++TG+ +R+ L I + I++GTHAL +D+++ Sbjct: 320 LVVQHYEFIKGIMEPFGIQVGLLTGSTTAKQKRELLAAIKTNEIQIVVGTHALIEDNVEI 379 Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452 L LVI DEQHRFGV+QRLKLT+K P V++MTATPIPRTL L GD+DIS I E P Sbjct: 380 PNLGLVITDEQHRFGVRQRLKLTEKGHLPDVMVMTATPIPRTLALILYGDMDISIIDELP 439 Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE-KKESNFRSVVERFNSLH 511 GR+PI+T + + ++ + G++ Y ICP +EE +K S ++V+E L Sbjct: 440 PGRQPIRTNAVDSAYHPRIYRFIEKQIEAGRQCYIICPMVEESEKTSELKNVIEYTEYLK 499 Query: 512 EHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 IA +HG+M +K +M F K+L++TTVIEVG++V +A+II+IENAE Sbjct: 500 TQVFPHIPIAYLHGKMKPKEKNEIMAQFARAETKILVSTTVIEVGVNVPNATIILIENAE 559 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQ 627 FGLAQLHQLRGRVGRG+ S C+L+ SKN T RL +++ + DGF+IAE DLK Sbjct: 560 RFGLAQLHQLRGRVGRGKHQSYCVLVSD---SKNKVTKKRLKIMEESTDGFVIAETDLKL 616 Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681 R GE G KQ G+P+ IA +L + K++L DP+L + + Sbjct: 617 RGPGEFFGTKQHGLPEMKIANLYTDAKVLGEVQGCVKNLLAIDPNLGETQNNQL 670 >gi|313204849|ref|YP_004043506.1| ATP-dependent DNA helicase recg [Paludibacter propionicigenes WB4] gi|312444165|gb|ADQ80521.1| ATP-dependent DNA helicase RecG [Paludibacter propionicigenes WB4] Length = 698 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 239/682 (35%), Positives = 378/682 (55%), Gaps = 48/682 (7%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG K + L+K + +A DLL ++P ++DR + EISE+ + + G I Sbjct: 13 GVGPKKADLLNKELGIRSAE-----DLLRHYPYKYVDRSRFYYLHEISEDMPFIQVKGQI 67 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 + + + DG I L++F + + + + + G + V GK R Sbjct: 68 IRFEKVGEGPTQRLTAIFTDGRETIELVWF-KGVKYVIDKYKTGVQYVVFGKPSPFNGRF 126 Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLP-------------------TGLSVDLFKKIIVE 177 +VHP IE V LP + L+ + +KII Sbjct: 127 NIVHPE-------------IELVSQLPPPEQMGLQPFYNTSEKMKNSFLNSKMLQKIIFP 173 Query: 178 ALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 + + P +P+ + LLQK + ++ E+ +H P+ A + AR+RL ++EL Sbjct: 174 VIQSIKPGIPDTLPAYLLQKFALMNLTESLVNVHFPKNANAL---NKARQRLKFEELFYI 230 Query: 237 QIALLLMRKQFKKEI-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRM 294 Q+ +L K + G G ++ +PF T +Q+ +++I D++ +M Sbjct: 231 QLNILQQTKWRDQHFKGFVFGQIGHYFNTFFKDFLPFELTGAQKRVLREIRIDVASGRQM 290 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R+LQGDVGSGKTLVAL+AM AV+ G QA IMAP ILA QH+ + ++ + + V + Sbjct: 291 NRLLQGDVGSGKTLVALMAMLMAVDNGFQACIMAPTEILATQHFASLTEFLGDMGVSVAL 350 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 +TG+ R + E++ G+ +I+IGTHAL +D++Q+ L LV++DEQHRFGV+QR +L Sbjct: 351 LTGSTRPKARVELHEKLRSGELNILIGTHALIEDTVQFSNLGLVVIDEQHRFGVEQRARL 410 Query: 415 TQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 +K PH+L+MTATPIPRTL +T GD+ +S I E P GRKPI+T N+ + + Sbjct: 411 WRKNVQPPHILVMTATPIPRTLAMTLYGDLSVSVIDELPPGRKPIQTYHYYENKRQGLNQ 470 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKES 532 + + G++ Y + P I+E ++ + +++ + + E F T +I+ +HG++ +K+ Sbjct: 471 FIAKQVEAGRQIYIVYPLIQESEKIDLQNLETGYEYMREVFPTYTISKVHGKLKPAEKDH 530 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 M F G ++++ATTVIEVG++V +AS+++IE+A+ FGL+QLHQLRGRVGRG E S C Sbjct: 531 EMQKFVTGQTQIMVATTVIEVGVNVPNASVMVIESAQRFGLSQLHQLRGRVGRGAEQSFC 590 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPEL 651 ILL L+ ++ R+ ++ T DGF I+E DLK R G++ G +QSG+P L IA Sbjct: 591 ILLTDYKLASDTRKRMEIMVRTNDGFEISEADLKLRGPGDLEGTQQSGLPFDLKIANLAQ 650 Query: 652 HDSLLEIARKDAKHILTQDPDL 673 +LEIAR A IL DP L Sbjct: 651 DGKMLEIARNAAMEILEDDPQL 672 >gi|77408999|ref|ZP_00785719.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae COH1] gi|77172383|gb|EAO75532.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae COH1] Length = 671 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 242/669 (36%), Positives = 373/669 (55%), Gaps = 29/669 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L +P+S +G G K + K+ + DLL Y+P + D + + E+ Sbjct: 3 LQSPISNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEK 56 Query: 69 IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 V ITG + ++ Q KR L G + + FF + L + G+++ V Sbjct: 57 AV-ITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQP--YLADKIELGQEVAVF 113 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA--LSRLPV 184 GK K+ I + + +D P VY + G+S K I A ++ Sbjct: 114 GKWDATKSAITGMK---VLAQVEDDMQP----VYRVSQGISQSTLIKAIKSAFEINAHLE 166 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 L E + LL K ++A +H P KD A R+ ++EL Q+ L +++ Sbjct: 167 LKENLPATLLGKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVLK 223 Query: 245 KQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 + K E G+ I + + ++PF T +Q+ ++ +IL DMS M R+LQGDVG Sbjct: 224 AENKSETNGLSILYSKHAMETKISSLPFILTNAQKRSLDEILSDMSSGAHMNRLLQGDVG 283 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT++A ++M AA AG Q+ +M P ILA+QHY +++ + I I+T M A Sbjct: 284 SGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELFPDLSI--AILTSGMKAAV 341 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 +R L IA+G +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR +K P V Sbjct: 342 KRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPDV 401 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL +T+ G++D+S I E PAGRKPI T + ++ V+E +K L + Sbjct: 402 LMMTATPIPRTLAITAFGEMDVSIIDELPAGRKPIITRWVKHEQLGTVLEWVKGELQKDA 461 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGT 541 + Y I P IEE + + ++ V L +F + +A++HGRM + +K+++M FK+ Sbjct: 462 QVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDKK 521 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S +L+ +P + Sbjct: 522 SHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGYKQSYAVLVANPK-T 580 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 + R++++ T DGF++AE DLK R GEI G +QSG+P+F +A +LE AR+ Sbjct: 581 DSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARR 640 Query: 662 DAKHILTQD 670 A I+ + Sbjct: 641 VASDIVKDN 649 >gi|229031485|ref|ZP_04187485.1| ATP-dependent DNA helicase recG [Bacillus cereus AH1271] gi|228729774|gb|EEL80754.1| ATP-dependent DNA helicase recG [Bacillus cereus AH1271] Length = 682 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 229/663 (34%), Positives = 375/663 (56%), Gaps = 33/663 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G + S L ++ ++ LL + P + D + ++E+ + VT Sbjct: 8 PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G + Q ++ ++ + G IT + F R K +T+TGK Sbjct: 61 VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRP--YYKQKLNLDETVTITGKW 118 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184 + + I + H+ Q +E VYS+ L+V ++ I +A S + V Sbjct: 119 DQHRQTIAVSELHFGPVARQQE----VEPVYSVKGKLTVKQMRRFIAQAFKEYGKSIVEV 174 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LP+ + L + K P EA +H P +D + AR R Y+E Q+ + +R Sbjct: 175 LPDGL---LSRYKLLPRY-EALRALHFPAGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227 Query: 245 KQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 K ++ G + Q+ + +PF T +Q + +I++DM+ RM R+LQGDVG Sbjct: 228 KMERENSKGTKKEIPSAELQEFIDALPFPLTGAQSRVVDEIMKDMTSPYRMNRLLQGDVG 287 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA I + AA A Q +M P ILA+QHY+ + + + + VE++T ++ Sbjct: 288 SGKTVVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGVR 347 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L ++ G+ I++GTHAL QD + +++L LVI DEQHRFGV QR L +K +P V Sbjct: 348 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D V+ ++ + +G+ Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541 +AY ICP IEE ++ + ++ ++ + L H+ + ++HGR+S +KE +M F Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+ P S Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660 + R+ ++ T DGF+++E+DL+ R G+ G KQSG+P+F +A +HD LE AR Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645 Query: 661 KDA 663 +DA Sbjct: 646 QDA 648 >gi|213963738|ref|ZP_03391988.1| ATP-dependent DNA helicase RecG [Capnocytophaga sputigena Capno] gi|213953618|gb|EEB64950.1| ATP-dependent DNA helicase RecG [Capnocytophaga sputigena Capno] Length = 704 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 243/696 (34%), Positives = 377/696 (54%), Gaps = 35/696 (5%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 N L +S RGVG + + L + + DLL P+ +IDR KI+E+ Sbjct: 5 NILHTSISHLRGVGAQRAELLKTELGI-----YEYQDLLNLFPNRYIDRTKFYKINELQN 59 Query: 67 ERI-VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKI 123 V + G I + + ++ +++ D TG + L++F + + L++ Sbjct: 60 NNAEVQLVGKIVNLRTVESAHQKSNRLVATFVDETGTMELVWF-KGLKWLRDSLKINEPY 118 Query: 124 TVTGKIKKLKNRIIMVHPHYIF--------HNSQDVNFPLIEAVYSLPTGLSVDLFKKII 175 + GK+ M HP HNS +P E + ++ + ++++ Sbjct: 119 VIFGKLNFFGGTFSMPHPEMDLLSEFKKTGHNSIQPVYPSTEKLAK--RNITNRVMRQLV 176 Query: 176 VEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234 + E + +L + S EA IH P + A RL ++EL Sbjct: 177 QTVFEEIGYNFTENLPDTILTAMNLISKQEAMCNIHFPTNQS---LLTKASIRLKFEELF 233 Query: 235 AGQIAL----LLMRKQFKKEIGIPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMS 289 Q+ L LL +++F+ G P G ++PF T +Q+ A+K+I D+ Sbjct: 234 YIQVQLVRKNLLHKQKFQ---GQPFKKVGDAFMNFYNYHLPFPLTNAQKRALKEIRADVG 290 Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349 +M R+LQGDVGSGKT+VAL+ M AV+ QA +MAP ILA QHY+ I + +NT Sbjct: 291 SNAQMNRLLQGDVGSGKTIVALMTMLLAVDNHCQACLMAPTEILANQHYQTISELLKNTG 350 Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409 I V ++TG+ RR E++ G+ I+IGTHAL ++ +Q+ L L I+DEQHRFGV+ Sbjct: 351 ITVALLTGSSKTKERRILDEQLQSGELSILIGTHALLEEKVQFQNLGLAIIDEQHRFGVE 410 Query: 410 QRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468 QR KL +K T PH+L+MTATPIPRTL ++ GD+D+S I E P GRKPIKT+ NR Sbjct: 411 QRAKLWRKNTIPPHILVMTATPIPRTLAMSVYGDLDVSVIDELPPGRKPIKTLHQYENRR 470 Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRM 525 E E +K + +G++AY + P IEE + +F+++ E + + F ++I+HG++ Sbjct: 471 AETYEFIKREIDKGRQAYVVYPLIEESEALDFKNLTEGYEYITASFPLPKYKVSIVHGKL 530 Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585 +K++ M+ F ++++ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGR Sbjct: 531 KPAEKDAEMERFLRNETQIMVATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGR 590 Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645 G E S CILL +S + R+ + T DGF IAE DLK R G+++G +QSG+ Sbjct: 591 GSEQSYCILLTGNKMSNETRIRMETMVRTNDGFEIAEVDLKLRGPGDLMGTQQSGVLALK 650 Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681 IA +L+ AR A ++ DP+L + Q + Sbjct: 651 IADLVKDQDILKAARFQAIDLVKADPNLELPQNQRV 686 >gi|171779290|ref|ZP_02920261.1| hypothetical protein STRINF_01138 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282346|gb|EDT47773.1| hypothetical protein STRINF_01138 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 671 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 243/634 (38%), Positives = 363/634 (57%), Gaps = 25/634 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGE 100 DLL Y+P + D + + + E+ V I G + ++ Q KR + G Sbjct: 31 DLLLYYPFRYEDFKSKSILDLVDGEKAV-IVGTVVTPANVQYYGYKRNRLSFKIKQGEAV 89 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160 I + FF + L + G + + GK LK+ + + I +D P VY Sbjct: 90 IAISFFNQP--YLADKVELGSDVAIFGKWDALKSAVTGMK---ILAQVEDDMQP----VY 140 Query: 161 SLPTGLSVDLFKKIIVEA--LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 + G+S + K I A L LPE + + L K A+A +H P KD Sbjct: 141 RVAQGISQNALIKAIKSAFALGAQNWLPENLPQVFLDKYRLLGRAKATEAMHFP---KDL 197 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINV-EGKIAQKILRNIPFSPTKS 276 A R+ ++EL Q+ L ++ K E G+ I E K+A KI ++PF T Sbjct: 198 AEYKQALRRIKFEELFYFQMNLQALKADNKSEANGLMIAYDEQKVADKIA-SLPFDLTGG 256 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q+ ++ DIL DM M R+LQGDVGSGKT+VA +AM AA AG Q+ +M P ILA+Q Sbjct: 257 QKRSLSDILSDMRSGGHMNRLLQGDVGSGKTVVASLAMYAAYTAGYQSALMVPTEILAEQ 316 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 H+E + + + I I+T M A+++ AL IA G +I+GTHAL QD++ Y++L Sbjct: 317 HFESLMQLFPDLSI--AILTSGMKAANKKAALAAIADGSVDMIVGTHALIQDTVSYHRLG 374 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 VI DEQHRFGV QR +K P VL+MTATPIPRTL +T+ G++D+S I E PAGRK Sbjct: 375 FVITDEQHRFGVNQRRIFREKGENPDVLMMTATPIPRTLAITAFGEMDVSIIDELPAGRK 434 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515 PI T + ++D V++ +K L +G +AY I P IEE + + ++ + L E+F Sbjct: 435 PIITRWVKHEQLDIVLDWVKKELPKGAQAYVISPLIEESESLDLKNAIALHEDLSEYFAD 494 Query: 516 -SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 +++A++HGRM + +KE++M FK ++L++TTVIEVG++V +A+I+II +A+ FGL+ Sbjct: 495 CANVALMHGRMKNEEKEAIMQDFKAQKSQVLVSTTVIEVGVNVPNATIMIIMDADRFGLS 554 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG++ S IL+ +P ++ R+ ++ T DGF +AE DLK R GEI Sbjct: 555 QLHQLRGRVGRGDKQSYAILVANPK-TETGKKRMKIMTETTDGFALAEADLKMRGSGEIF 613 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668 G +QSG+P+F +A ++LE AR+ A I++ Sbjct: 614 GTRQSGIPEFQVADIVEDYNILEEARRVASQIVS 647 >gi|163790813|ref|ZP_02185238.1| ATP-dependent DNA helicase RecG [Carnobacterium sp. AT7] gi|159873881|gb|EDP67960.1| ATP-dependent DNA helicase RecG [Carnobacterium sp. AT7] Length = 682 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 230/648 (35%), Positives = 368/648 (56%), Gaps = 20/648 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98 DLL ++P + D R + EI ++ VT+ G + S F +K R +++++ Sbjct: 33 DLLSHYPIRYEDIQER-DLLEIEDQEKVTLKGNVVSEAVVSRFGPKKNRLSFRLIIEHAV 91 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 I++ FF + LK+ G +I V GK + + + +S+ +F E+ Sbjct: 92 --ISVTFFNQA--YLKSKIVTGEEIAVFGKWDAKRKSLTGIKILGTRSDSEKGDF---ES 144 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 VYS + ++I EA + +PE + +L K S +A +H P K Sbjct: 145 VYSANKHIKQSTILQLITEAYNLYQDHIPEVVPPELRIKYRLISHRDAVYAMHFPASEKQ 204 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKS 276 AR + ++E L Q+ + ++RK+ K G +N + + +PF TK+ Sbjct: 205 ---KKQARREVVFEEFLLYQMRMQIVRKKQKAMGKGNTLNYNVTDLRNFIETLPFELTKA 261 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q+ + +I D+ Q M R+LQGDVGSGKT+VA IA+ AA G Q+ +M P ILA+Q Sbjct: 262 QKRVVNEICSDLRQPIHMHRLLQGDVGSGKTIVAAIALYAATNVGVQSALMVPTEILAEQ 321 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 H E + + ++ + ++TG+ RR LE++A+G+ ++IGTHAL Q + + KL Sbjct: 322 HMESLSELFNPLEVRIALLTGSTKTKDRRLILEQLANGELDVLIGTHALIQQDVYFSKLG 381 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 LVI DEQHRFGV QR L K VL MTATPIPRTL +T+ G++D+S I E PAGR Sbjct: 382 LVITDEQHRFGVNQRKLLRDKGKDADVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRI 441 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 PI+T I ++ +E +++ L +G +AY ICP IEE + + ++ + + L ++ Sbjct: 442 PIQTTWIKPQNFEKTLEFIELQLRKGSQAYVICPLIEESETMDVKNATDIYEKLTAYYGD 501 Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + ++HG+M +KES M++FK ++L++TTVIEVG++V +A+ +II +A+ FGL+ Sbjct: 502 RFQVGLLHGKMKSSEKESTMENFKEKKLQVLVSTTVIEVGVNVPNATTMIIYDADRFGLS 561 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG++ S CIL+ +P ++N R+ ++ T DGF+++E+DL+ R G++ Sbjct: 562 QLHQLRGRVGRGDKESYCILVANPK-TENGMERMKIMTETTDGFILSEKDLELRGPGDLF 620 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682 G KQSG+P F I LE AR++A ++ Q LT+ Q +R Sbjct: 621 GNKQSGLPDFKIGDIIGDFGALEAARQEANQLVNQKDFLTNEVYQQLR 668 >gi|325859672|ref|ZP_08172802.1| ATP-dependent DNA helicase RecG [Prevotella denticola CRIS 18C-A] gi|327312996|ref|YP_004328433.1| ATP-dependent DNA helicase RecG [Prevotella denticola F0289] gi|325482598|gb|EGC85601.1| ATP-dependent DNA helicase RecG [Prevotella denticola CRIS 18C-A] gi|326944569|gb|AEA20454.1| ATP-dependent DNA helicase RecG [Prevotella denticola F0289] Length = 698 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 237/674 (35%), Positives = 376/674 (55%), Gaps = 30/674 (4%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITG 74 +GVG + LS+ + + DLL Y P ++DR ISE+S + V I G Sbjct: 11 LQGVGPRRKEILSRELGIRT-----YRDLLEYFPYKYVDRTKVYLISELSPDMPFVQIKG 65 Query: 75 YISQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133 I + + KRR I DG G I L ++ T+ + + R+ V GK Sbjct: 66 RIIRFEETETGKRRKRVIAHFTDGHG-ICDLVWFNGTKYVYQNYQLNREYVVFGKPAVFN 124 Query: 134 NRIIMVHPHYIFHNSQDVNFPLIEAVYSLP-----TGLSVDLFKKIIVEALSRLP----- 183 R HP +N ++ Y G++ +K+ + +L Sbjct: 125 GRFQFSHPDIDDAAQLQLNDMGMQPFYITTEKMKKAGITSRAMEKLTKTLIGKLSEPLEE 184 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 LP +I L S A IH PR D T AR RL ++EL Q+ +L Sbjct: 185 TLPPFITSHL----HLISRDAALRKIHYPRSVDD---TQRARVRLKFEELFYVQLNILRY 237 Query: 244 RKQFKKEI-GIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +++ G N + + N+PF T +Q+ + +I DM+ +M R+LQGD Sbjct: 238 ASDHRRKYRGYIFNRIGAQFNWFYTHNLPFELTGAQKRVMHEIRADMAGGRQMNRLLQGD 297 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVAL++M A++ G QA +MAP ILA+QH + ++ + + + +E++TG + Sbjct: 298 VGSGKTLVALMSMLIAIDNGYQACMMAPTEILAEQHLQTLRDFLKGMNLRIELLTGIVKG 357 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TA 420 RR+ L+ + G HI++GTHAL +D +Q+++L + +VDEQHRFGV QR +L K+ Sbjct: 358 KRRREVLDGLMDGSIHIVVGTHALLEDKVQFHRLGMAVVDEQHRFGVAQRARLWSKSENP 417 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 PH+L+MTATPIPRTL +T GD+D+S I E P GRKPI+T+ +++ + ++ + Sbjct: 418 PHILVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTLHKYDDQMPSLYNGIRQQIR 477 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539 G++ Y + P I+E + + +++ + F++L + F ++ +HG+M D +KE+ M F + Sbjct: 478 LGRQVYIVYPLIKESERMDLKNLEDGFSALCDIFPEFRLSKVHGKMKDKEKEAEMQKFVS 537 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+ Sbjct: 538 GQTQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQSYCILVTSHR 597 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEI 658 L+K + R+ ++ T DGF IAE DLK R G++ G +QSG+ L IA ++++ Sbjct: 598 LTKETSRRIDIMCETNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQIVQM 657 Query: 659 ARKDAKHILTQDPD 672 AR++A+ I+ DPD Sbjct: 658 AREEAQKIIDADPD 671 >gi|291528911|emb|CBK94497.1| RecG-like helicase [Eubacterium rectale M104/1] Length = 688 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 237/682 (34%), Positives = 364/682 (53%), Gaps = 38/682 (5%) Query: 11 APLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 +P++ +G+G+K +K + G D+L + P ++ P+I++I E Sbjct: 5 SPITAVKGIGEKTQKAFAKMGVYTVG--------DILLHFPRDYVKF---PEITDIDELN 53 Query: 69 IVTITGYISQHSSFQ----LQKRRPYKILLND--GTGEITLLFFYRKTEMLKNVFFEGRK 122 V ++ + H+ + ++ +I L D G + L +YR LK +GR Sbjct: 54 NVNVSSTYAIHAVIKKAPVVKNTARMQITLQDIGSPGHMIQLVWYR-MPYLKAQLVQGRH 112 Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182 + G IK R +M P + ++ VYS+ TG++ +L K I E LS Sbjct: 113 LIFYGHIKPKGGRYVMEQPVVYEVQKYEAIRDTLQPVYSVTTGVTNNLIVKTIKETLSHD 172 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 +L +++ KD+ + F A IH P DF+ AR RL +DE + ++ Sbjct: 173 TLLSDYLPKDIRSRYGFCEYNYAMKQIHFP---DDFDALVEARRRLVFDEFF---LFIMG 226 Query: 243 MRKQFKKEIGIPINVE---GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 MR Q KK+ E ++ +P+ T +Q+ I +I QD+ M R++Q Sbjct: 227 MRYQNKKQQKDKNEFEFTDDAFIDGLIDKLPYELTGAQKKTIDEIKQDIKSPYVMQRLIQ 286 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE----FIKKYTQNTQIIVEII 355 GDVGSGKT+VA + MA A + G Q+ IMAP +LA QHYE + ++ ++ ++ ++ Sbjct: 287 GDVGSGKTIVAFLLMAWASKCGYQSAIMAPTEVLANQHYETFCSLVSQFGLDSPVV--LL 344 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 TG+M +R+A R+ + + +IIGTHAL Q+ + L LVI DEQHRFGV+QR + Sbjct: 345 TGSMTAKQKREAYARLENEKNALIIGTHALIQEKADFSNLSLVITDEQHRFGVKQRESFS 404 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 K PH+L+M+ATPIPRTL + GD+DIS I E PA R PIK ++ + + Sbjct: 405 DKGRKPHILVMSATPIPRTLAIIIYGDMDISVINEVPAKRLPIKNCVVGTAFRPKAYSFI 464 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA--IIHGRMSDIDKESV 533 + + G +AY ICP +EE + S +V + N L I +++GRM K+ V Sbjct: 465 EEQVRAGHQAYVICPLVEETENSEGENVTDYANVLKAALPKDITVDVLNGRMKSKAKDEV 524 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M F N ++L++TTV+EVG++V +A++++IENA+ FGLAQLHQLRGRVGRG+ S CI Sbjct: 525 MQRFANNESQVLVSTTVVEVGVNVPNATVMMIENADRFGLAQLHQLRGRVGRGDAQSYCI 584 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 + SK S RL +L + DGF IA EDLK R G+ GI+QSG F +A Sbjct: 585 FINS-SNSKKSKKRLEILNKSNDGFYIASEDLKLRGPGDFFGIRQSGDLAFALADVYQDS 643 Query: 654 SLLEIARKDAKHILTQDPDLTS 675 +L+ A + +L DP L + Sbjct: 644 DVLKEASEMVDEVLEADPALCT 665 >gi|313115462|ref|ZP_07800929.1| ATP-dependent DNA helicase RecG [Faecalibacterium cf. prausnitzii KLE1255] gi|310622229|gb|EFQ05717.1| ATP-dependent DNA helicase RecG [Faecalibacterium cf. prausnitzii KLE1255] Length = 686 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 231/673 (34%), Positives = 357/673 (53%), Gaps = 30/673 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID--RHYRPKISEISEERI 69 P+ +GVG K + K+ DLL ++P +ID + Y + E + Sbjct: 14 PVRYLKGVGPKTAERFEKL------GIVTLADLLCHYPRRYIDFTKPYSIAEAPTDVECV 67 Query: 70 VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF-----YRKTEMLKNVFFEGRKIT 124 V + RR +I D + + +F +K ++ + +F+G Sbjct: 68 VRAEVFAKPGGRILPGGRRMERITAGDDVSSLEITWFNNPYAAQKLQLGQEYYFQG---I 124 Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184 VTG + + + MV+P ++ + EAVY GL+ + K + + L + Sbjct: 125 VTGGMLRRQ----MVNPQ--VRTAEQIKASPFEAVYPQTEGLTSNAIAKCVRQLLPHAEL 178 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LP+ + ++L K S A+A IH P E AR RL Y+ELL Q+ + M+ Sbjct: 179 LPDPLPPEMLAKYRLLSKADAVRAIHCPATE---EQAYAARRRLIYEELLVLQLGIGRMK 235 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 + G P+ + ++PFSPT +Q A+ +IL DM+ + M R+LQGDVGS Sbjct: 236 NRGAAATGAPMQLADP--SLFWASLPFSPTGAQRRAVSEILADMAGETSMNRLLQGDVGS 293 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKTLVA A+ A + AG QA ++AP ILA QH E + + + V ++TG M A R Sbjct: 294 GKTLVAAAAIWACIRAGYQAALLAPTEILATQHAEGLNRMLAPFGMRVALLTGGMKAAAR 353 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424 R L I + +A +++GTHA+ + +++ +L L ++DEQHRFGV+QR L +KA PH+L Sbjct: 354 RTTLAAIRNDEADLVVGTHAILSEGVEFARLGLAVIDEQHRFGVRQRGMLAEKAANPHLL 413 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 +M+ATPIPRTL L GD+DIS + E P GR P+KT I + ++ L + G++ Sbjct: 414 VMSATPIPRTLGLLIYGDLDISILDELPPGRTPVKTRCITGKKRRDLYHFLDQEIGRGRQ 473 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542 Y +CP IE+ + +V + + + + ++HG++ +K +VM+ FK G Sbjct: 474 VYLVCPAIEDTPDGGLNAVKSYYEDIAKALLPERRVGLMHGKLKPKEKAAVMEDFKAGRL 533 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 L++TTVIEVG+DV +AS+++IENAE +GL+ LHQLRGRVGRG S C L+ S+ Sbjct: 534 DALVSTTVIEVGVDVPNASVMVIENAERYGLSALHQLRGRVGRGAAESWCFLVSD-NQSE 592 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662 N RL L +T DGF +A+ DL+ R G+ G +Q G+P IA L A+ + Sbjct: 593 NVQKRLKFLCSTTDGFAVAQYDLETRGPGDFFGSRQHGLPTLQIADLMNDTRTLHAAQAE 652 Query: 663 AKHILTQDPDLTS 675 A +L DP L + Sbjct: 653 AVAMLADDPLLEA 665 >gi|308069664|ref|YP_003871269.1| ATP-dependent DNA helicase recG [Paenibacillus polymyxa E681] gi|305858943|gb|ADM70731.1| ATP-dependent DNA helicase recG [Paenibacillus polymyxa E681] Length = 695 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 231/659 (35%), Positives = 367/659 (55%), Gaps = 20/659 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99 D+L Y+P + D R +SE+ + +T+ I Q R+ K++ D Sbjct: 46 DMLEYYPFRYEDYRLR-SLSEVKDGDKITVQAKIMGIPVLQRYGRKSRLTCKLMAEDWM- 103 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159 T +F R +K GR+I VTGK LK R+ M F + ++ V Sbjct: 104 -FTATWFNR--HFMKEQLTSGREIVVTGKWD-LK-RMQMTVADSEFPDKGAARSGTLQPV 158 Query: 160 YSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 YS+ ++ +K + + L + ++PE + + L++K S +A IH P+ ++ Sbjct: 159 YSIGGKITQSWMRKTMSQTLQQFGEMIPEILPELLVRKYSMMPRKQAIAGIHQPQDNREG 218 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 + AR R+ Y+EL Q+ + R + + G+ V+ ++ +R +PF T +Q Sbjct: 219 Q---EARRRMVYEELFLFQLKMQAFRALNRGRADGVVHTVDNATIREFVRALPFELTDAQ 275 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + +IL D+ M R+LQGDVGSGKT+VA I + A V +G Q +M P ILA+QH Sbjct: 276 KKVELEILHDLRSPYCMNRLLQGDVGSGKTVVAAIGLFATVRSGFQGALMVPTEILAEQH 335 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 + K + I V ++TG+ R++ L + G I++GTHAL Q+ + + +L L Sbjct: 336 MRSLHKLFEPFGISVGLLTGSTTGKKRKELLAALQMGLLDIVVGTHALIQEDVYFRQLGL 395 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 V+ DEQHRFGV QR L +K P VL MTATPIPRTL +T+ GD+D+S ++E+P GR P Sbjct: 396 VVTDEQHRFGVNQRSVLRRKGYNPDVLTMTATPIPRTLAITAFGDMDVSTLSERPKGRIP 455 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516 I T + +D V+ + + +G++AY ICP IEE ++ + ++ ++ + + F Sbjct: 456 ISTYWVKHELMDRVLGFISREVDQGRQAYLICPLIEESEKLDVQNAIDLHIQMQQAFPHY 515 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 + ++HGRM+ +KE VM SF +LL++TTV+EVG+DV +A+++II +A+ FGL+QL Sbjct: 516 RVGLLHGRMTPAEKEEVMRSFYANEVQLLVSTTVVEVGVDVPNATLMIIMDADRFGLSQL 575 Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636 HQLRGRVGRG S C+L+ P S+ R+ V+ +T+DGF +A DL R G+ G Sbjct: 576 HQLRGRVGRGAHASYCVLIADPK-SEVGQERMKVMTDTDDGFEVARRDLDLRGPGDFFGT 634 Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695 KQSG+P+F +A +LE AR+DA ++ TS + +++R L Q + FQ Sbjct: 635 KQSGLPEFRLADMVADFEVLEKAREDATDLIKDASFWTSPQYEALRGYL---QKEQIFQ 690 >gi|260171931|ref|ZP_05758343.1| ATP-dependent DNA helicase RecG [Bacteroides sp. D2] gi|315920243|ref|ZP_07916483.1| ATP-dependent DNA helicase recG [Bacteroides sp. D2] gi|313694118|gb|EFS30953.1| ATP-dependent DNA helicase recG [Bacteroides sp. D2] Length = 698 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 243/681 (35%), Positives = 368/681 (54%), Gaps = 43/681 (6%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + + L+K + + + DL++Y P +IDR I EI + + G I Sbjct: 14 GVGPQKAAVLNKELEIYSLH-----DLIYYFPYKYIDRSRIYYIHEIDGNMPYIQLKGEI 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 + ++R +DGTG + L++F +L I + GK RI Sbjct: 69 LGFETIGEGRQRRLTAHFSDGTGVVDLVWFQGIKYILGKYKLHEEYI-IFGKPTVFNGRI 127 Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190 + HP + ++ ++ YS + +E + + LPE + Sbjct: 128 NVAHPDVDKPDDLKLSSVGLQPYYSTTEKMKRSFLNSHAIEKMMATVIQQIQEPLPETLS 187 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSP-----ARERLAYDELLAGQIALLLMRK 245 LL + + EA IH P T+P A+ RL ++EL Q+ +L K Sbjct: 188 PKLLTEHHLMPLTEALRNIHFP--------TNPDVLRRAQYRLKFEELFYVQLNILRYAK 239 Query: 246 QFKKEIGIPINVEGKIAQKI--------LRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 +K G I +K+ +N+PF T +Q+ +K+I D+ +M R+ Sbjct: 240 DRQKR------YRGYIFEKVGDVFNTFYTKNLPFQLTGAQKRVLKEIRNDVGSGRQMNRL 293 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 LQGDVGSGKTLVAL++M A++ G QA +MAP ILA QHYE IK+ I VE++TG Sbjct: 294 LQGDVGSGKTLVALMSMLLALDNGYQACMMAPTEILANQHYETIKELLFGMDIRVELLTG 353 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 ++ R L + G I+IGTHA+ +D++ + L V++DEQHRFGV QR +L K Sbjct: 354 SIKGKRREAILSGLLTGDVQILIGTHAVIEDTVNFSSLGFVVIDEQHRFGVAQRARLWSK 413 Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PHVL+MTATPIPRTL +T GD+D+S I E P GRKPI T+ NR + + ++ Sbjct: 414 NVQPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPITTIHQFDNRRESMYRSVR 473 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMD 535 + EG++ Y + P I+E ++ + +++ E + + E F ++ +HG+M +K+ M Sbjct: 474 KQIDEGRQVYIVYPLIKESEKIDLKNLEEGYQHILEEFPKCTVCKVHGKMKPAEKDEQMQ 533 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F +G ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CIL+ Sbjct: 534 LFVSGKAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCILV 593 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDS 654 + L++++ RL ++ T DGF IAE DLK R G++ G +QSG+ L IA Sbjct: 594 TNYKLTEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIVRDGQ 653 Query: 655 LLEIARKDAKHILTQDPDLTS 675 LL+ R A+ I+ QDP S Sbjct: 654 LLQYVRAIAESIVEQDPAAQS 674 >gi|312131452|ref|YP_003998792.1| ATP-dependent DNA helicase recg [Leadbetterella byssophila DSM 17132] gi|311907998|gb|ADQ18439.1| ATP-dependent DNA helicase RecG [Leadbetterella byssophila DSM 17132] Length = 697 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 231/654 (35%), Positives = 363/654 (55%), Gaps = 15/654 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101 DLL ++P + DR KISE+++ + G I + + +DG + Sbjct: 34 DLLEHYPFRYEDRTRFYKISELTDTLPAAQLLGKIKSVELVGGKGKSRLVATFSDGVASM 93 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161 L++F + + G V GK + HP + S + +Y Sbjct: 94 ELVWF-QGVSYFHKILQIGANYIVYGKPSLFGGIFSIQHPEIELYKSDRPLPKYFQPIYH 152 Query: 162 LPTGLSVDLFKKIIVEALSR--LPVLPEWIEKDL----LQKKSFPSIAEAFNIIHNPRKA 215 L L + R LP++ E I + L L+K S EA+ +H PR Sbjct: 153 LTDKLRKKFIESKTFTQWFRTLLPLVQEHIHETLPEFLLKKYKLVSKKEAYYYLHLPRSP 212 Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPT 274 + A RL ++EL QI L+ + K E G N + + ++PF T Sbjct: 213 LE---QLHANRRLKFEELFYNQIKLISLSLVRKNEYPGQVFNKTTLLTKFYQDHLPFDLT 269 Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334 +Q+ I++I D+ +M R++QGDVGSGKT+VA I M A++ G QA +MAP ILA Sbjct: 270 GAQKRVIREIFGDLKSGRQMNRLVQGDVGSGKTIVAFICMLMAIDGGAQACMMAPTEILA 329 Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394 QQH+ +KK+ ++ + ++TG+ + R + + + GQ HI++GTHA+ +D +Q+ Sbjct: 330 QQHFSNLKKFADALELEIRLLTGSSTKKEREEIHQGLITGQIHILVGTHAVLEDVVQFQN 389 Query: 395 LILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452 L L ++DEQHRFGV QR KL +K PH+L+MTATPIPRTL +T GD+DIS+I E P Sbjct: 390 LGLCVIDEQHRFGVAQRAKLWEKNKKLYPHMLVMTATPIPRTLAMTLYGDLDISEIDELP 449 Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512 GRKPIKTV + V +K L++G++ Y + P IEE ++ + +++ + + ++ Sbjct: 450 PGRKPIKTVHRFESSRLAVWGFMKEELAKGRQIYVVFPLIEESEKLDLKNLFDGYENIRA 509 Query: 513 HFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 F +++I+HG+M DKE M FK G ++++ATTVIEVG+DV +AS+++IE+A F Sbjct: 510 AFPEFAVSIVHGKMKPKDKEYEMQRFKKGETQIMVATTVIEVGVDVPNASVMVIESAHRF 569 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631 GL+QLHQLRGRVGRG E S CIL+ LS ++ R+ + +E+GF I++ DL+ R G Sbjct: 570 GLSQLHQLRGRVGRGAEQSYCILMTDYKLSADTRKRMETMVESENGFYISKVDLELRGPG 629 Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685 ++ G +QSG+ +A + +L+IAR++A IL DP L+ ++I++ L Sbjct: 630 DLSGTQQSGLVDLKLANLAKDEEILKIAREEAFTILQMDPSLSMPEHKAIQMHL 683 >gi|313618310|gb|EFR90360.1| ATP-dependent DNA helicase RecG [Listeria innocua FSL S4-378] Length = 580 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 216/565 (38%), Positives = 339/565 (60%), Gaps = 20/565 (3%) Query: 114 KNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGL---SVD 169 KN G +T++GK K + +I N ++ +E VY L L ++ Sbjct: 1 KNKISVGETVTISGKWDKSRAQITASKIKIGAVENEEE-----LEGVYRLKGTLRNKTMQ 55 Query: 170 LFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA 229 + ++ ++ S+ + E I +LL+K +EA ++H P K+ E AR R+ Sbjct: 56 KYTRLAFDSYSK--DIEEVIPANLLEKYQLMDRSEAVRVLHFP---KNNEELKQARRRMV 110 Query: 230 YDELLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288 Y+E L Q+ + RK + +K GI IN + + + + ++PF TK+Q+ + +I DM Sbjct: 111 YEEFLLFQLKMQFFRKIEREKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDM 170 Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348 M R+LQGDVGSGKT+VA IAM AA ++G Q+ +M P ILA+QH + + Q Sbjct: 171 LSHFHMNRLLQGDVGSGKTVVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPF 230 Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408 I V ++T ++ RR+ L + +G ++IGTHAL QD + Y++L LVI DEQHRFGV Sbjct: 231 DITVGLLTSSVKGKQRRELLAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGV 290 Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468 QR L +K P VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T + + Sbjct: 291 AQRRILREKGEYPDVLFMTATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQML 350 Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMS 526 D VI ++ + +G + Y ICP IEE ++ + ++ ++ FN L + + ++HG++ Sbjct: 351 DRVIGFMEKEIDKGHQVYIICPLIEESEKLDVQNAIDVFNILQNKWGTKYVPGLMHGKLL 410 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 DKE +M F + L++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG Sbjct: 411 PADKEQIMRDFNDKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRG 470 Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646 + S CIL+ P ++ R+ ++ T DGF+++E DL+ R G+ G KQSG+P+F + Sbjct: 471 ADQSYCILIADPK-TEVGKERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKV 529 Query: 647 AQPELHD-SLLEIARKDAKHILTQD 670 A +HD +LEIAR+DA H++ ++ Sbjct: 530 ADM-VHDYRVLEIARQDAVHMIFEE 553 >gi|156740619|ref|YP_001430748.1| ATP-dependent DNA helicase RecG [Roseiflexus castenholzii DSM 13941] gi|156231947|gb|ABU56730.1| ATP-dependent DNA helicase RecG [Roseiflexus castenholzii DSM 13941] Length = 842 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 237/678 (34%), Positives = 357/678 (52%), Gaps = 54/678 (7%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP-YKILLNDGTGEI 101 DLL++ P + D R I+E+ + T+ + + ++ +L+ D TG + Sbjct: 149 DLLYHFPHRYDDFTSRKTIAELQPGAVETVIAEVLDARTLPMKSGGSRLDVLVGDETGTL 208 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVY 160 ++FF + L F G K+ ++GKI M P + F + ++ + V+ Sbjct: 209 KVVFF--RQPWLAQRFLVGTKVVLSGKIGVYDGLRQMASPEWQPFTDDDLIHVGRLVPVH 266 Query: 161 SLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 L GL + +I + + R P+L + + + ++ + +A IH P E Sbjct: 267 PLTRGLVERSARALIKQVVDRCAPMLEDHLPPAVRERTGLMPLPQAIAQIHFPDSRDMLE 326 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 AR RL +DE L Q+ +L + ++ + G I + + LR +PF T +Q Sbjct: 327 Q---ARRRLGFDEFLFIQLGVLQRKMIWQAQRGYAITRRDDVHEAFLRRLPFELTGAQVR 383 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI++I DM++ M R+LQGDVGSGKT+VA A A+ +G QA +MAP ILA+QHY Sbjct: 384 AIEEIFADMARPVPMARLLQGDVGSGKTVVAAAAALQAIASGYQAALMAPTEILAEQHYR 443 Query: 340 FIKKYTQNTQII-----------------------------------------VEIITGN 358 ++ N + V ++TG+ Sbjct: 444 GLRALLGNVPVPRDQRQVSAEDDLDPEQRERLEEIKRILGMSGDDDLDGRGVRVALLTGS 503 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + RR+ LE IA G +I+GTHAL +S+QY L L IVDEQHRFGV+QR +L K Sbjct: 504 LGAKERRRVLEGIARGDIDLIVGTHALITESVQYAALGLAIVDEQHRFGVEQRQRLKDKG 563 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH+L+MTATPIPRTL LT GD+D+S + E P GR+ IKT I D+ ++ Sbjct: 564 YNPHMLVMTATPIPRTLTLTIYGDLDVSVLDELPPGRQEIKTRWITTVERDKAYRHIRRE 623 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDS 536 +++G++A+ ICP +EE ++ + S E +L +A+IHG+M +K++VM + Sbjct: 624 VAKGRQAFVICPLVEESEKVDLPSAEEMHATLSRDVFPDLRVALIHGKMLPREKDAVMIA 683 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F+N +L+AT VIEVGIDV +A+ I+IE AE FGLAQLHQ RGRVGRG S CIL+ Sbjct: 684 FRNHEYDILVATAVIEVGIDVPNATTILIEGAERFGLAQLHQFRGRVGRGVHQSYCILVC 743 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SL 655 ++ + R+ ++ DGF +AE DL R GE G +QSG P +AQ L D L Sbjct: 744 DKEQNEVTRQRMEAMETISDGFRLAEIDLHLRGPGEFFGTRQSGTPDLKVAQ--LTDVRL 801 Query: 656 LEIARKDAKHILTQDPDL 673 L+ A ++A+ IL DP L Sbjct: 802 LQTAYREAQKILADDPQL 819 >gi|197122525|ref|YP_002134476.1| ATP-dependent DNA helicase RecG [Anaeromyxobacter sp. K] gi|196172374|gb|ACG73347.1| ATP-dependent DNA helicase RecG [Anaeromyxobacter sp. K] Length = 904 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 229/636 (36%), Positives = 347/636 (54%), Gaps = 11/636 (1%) Query: 49 PSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFY 107 P ++ DR +ISE+ T+ G +S +++ +P K+ + +G + L+FF Sbjct: 245 PRAYQDRTALRRISELRVGDEATVLGTVSHVRIQRMRSGKPLLKVGVQEGGSALELVFFN 304 Query: 108 RKTEMLKNVFFEGRKITVTGKIKK-LKNRIIMVHPHYIFHNSQD-VNFPLIEAVYSLPTG 165 LK F G + +GK+ + R M P + D NF I VY P Sbjct: 305 PPPWRLKQ-FAAGESLLCSGKVTEGFGARRQMSQPEVEKVQAGDSANFGRIVPVYPGPAD 363 Query: 166 LSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEW 220 +K++ + L P + + ++ ++ AEA H P D E Sbjct: 364 YQHPALRKLMKRLVDELVPAAVDDLPAEIRARRDLVGRAEALREAHFPPAGTDPLRAAER 423 Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280 +PA RL ++EL Q+AL L R+ + E GI + + + +PF T +QE A Sbjct: 424 VTPAFRRLVFEELFFLQLALALRRRGVRAEAGIAFDASPAALARAVEPLPFRLTGAQERA 483 Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340 + +I +DM+ M R+LQGDVGSGKT VA AM AV++G QA +M P ILA+QH Sbjct: 484 LAEIARDMADPEPMNRLLQGDVGSGKTAVAFAAMMLAVQSGWQAALMVPTEILAEQHART 543 Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400 + ++ + + V ++ + +R+A +A G+A I +GTHAL + ++ + +L LV+V Sbjct: 544 LSRWLEGRGVEVALVGASARGKGQREARAAVAEGRARIAVGTHALLEQAVGFERLGLVVV 603 Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460 DEQHRFGV QR L K P VL+MTATPIPRTL L GD+D SKI+E P GR P+ T Sbjct: 604 DEQHRFGVMQRAGLISKGRRPDVLVMTATPIPRTLALAFYGDLDQSKISELPPGRTPVTT 663 Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIA 519 + ++ + L G++ Y + P +EE ++++ L + F I Sbjct: 664 RLFGDSQRKAAYALARGELDAGRQVYVVYPLVEESEKTDLADATTGAADLAKVFPGHEIG 723 Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579 ++HGRM +K+ VMD F+ G +L+ATTVIEVG+DV +AS++I+E+AE FGL+QLHQL Sbjct: 724 LLHGRMKPEEKQRVMDRFRAGEVHVLVATTVIEVGVDVPNASVMIVEHAERFGLSQLHQL 783 Query: 580 RGRVGRGEEISSCILLYH-PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638 RGRVGRG S C+LL H ++ RL ++ T+DGF IA DL+ R GE+LG +Q Sbjct: 784 RGRVGRGAAKSHCLLLAHFRRAGDDARERLRAMEETQDGFEIARVDLRIRGPGELLGTRQ 843 Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 SG +A +++LE AR++A ++ +D DL Sbjct: 844 SGQKLLDVADLYRDEAILEEAREEAFGLVERDGDLA 879 >gi|241667284|ref|ZP_04754862.1| ATP-dependent DNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254875835|ref|ZP_05248545.1| ATP-dependent DNA helicase recG [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254841856|gb|EET20270.1| ATP-dependent DNA helicase recG [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 679 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 219/617 (35%), Positives = 355/617 (57%), Gaps = 26/617 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLL P + D + IS + ++ I G I+ + +++ ++ + ++ND TG T Sbjct: 27 DLLTIFPKEYKDTRFVSTISSLVTDKKYLIEGRIT-NLTYKKFGKKFLRFIVNDETGICT 85 Query: 103 LLFFYRKTEMLKNVFF---EGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEA 158 ++ F + N F + GK+ L MVHP + + + Sbjct: 86 IVMF----KFYPNQIFALENAEYVRCYGKVD-LSLNPQMVHPEWAVIKDGVCAIKKEFSP 140 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 VY L +S + +II+ L V + + + LL+ S ++A +H + D Sbjct: 141 VYRLKK-VSDKVVSRIILSCLKSKSV-ADILPRQLLRGFGLMSFSDALYYVHALTDSIDD 198 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 ++ + AR + ++E+LA ++A +RK +++E + + +P+ T++Q+ Sbjct: 199 KFINIARSSIKFEEMLAYKLAEESIRKSITNSSAPRLSLEESQQNEFYKKLPYQLTQAQQ 258 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 I +IL D+SQ + M+R+LQGDVG+GKT+VA +A+ AV++G QAV+MAP ILA+QHY Sbjct: 259 RTITEILADISQSSAMIRLLQGDVGAGKTIVAAMAVYTAVKSGYQAVVMAPTEILAEQHY 318 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 F Y + I V + G + R++L I + +I+GTHA+FQ+ ++Y L LV Sbjct: 319 SFFASYMPDLDIDVVPLLGKLTAKQTRESLAVIKSKKDCVIVGTHAVFQERVEYCNLGLV 378 Query: 399 IVDEQHRFGVQQRLKLTQKAT------APHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452 +VDEQHRFGV+QRL L K++ PH L+++ATPIPRTL +T G++ +S + E P Sbjct: 379 VVDEQHRFGVEQRLALINKSSLNDRHLVPHQLIISATPIPRTLAMTLYGNLQLSILDELP 438 Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512 RKPI T ++ + +I ++K +S G++ YW+CP +EE + +F ++ +LH+ Sbjct: 439 PNRKPIVTTVLNRAKKQSLIGKVKEAVSRGEQVYWVCPLVEESENMDF---LQDVKTLHK 495 Query: 513 HFTSS-----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + + +++G M DK M FK K+L+ATTVIEVG+DV +ASI+II+N Sbjct: 496 ELAEALGKENVGLVYGSMKSKDKIQEMSDFKAKKYKVLVATTVIEVGVDVPNASIMIIDN 555 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627 AE G++QLHQLRGRVGRG + S CILLY +S+ RLS+++ ++DGF +AE+DL+ Sbjct: 556 AERLGISQLHQLRGRVGRGAKESYCILLYSDRISEVGKKRLSLVRESQDGFYLAEKDLEI 615 Query: 628 RKEGEILGIKQSGMPKF 644 R G+ILG +QSG+ F Sbjct: 616 RGAGDILGKEQSGVSTF 632 >gi|225010853|ref|ZP_03701321.1| ATP-dependent DNA helicase RecG [Flavobacteria bacterium MS024-3C] gi|225005061|gb|EEG43015.1| ATP-dependent DNA helicase RecG [Flavobacteria bacterium MS024-3C] Length = 701 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 241/657 (36%), Positives = 374/657 (56%), Gaps = 22/657 (3%) Query: 41 FIDLLFYHPSSFIDRHYRPKISEISEERI-VTITGYISQHSSFQLQKRRPYKILLNDGTG 99 + DLL + P+ ++DR I+++ + V I G I+Q + +K D TG Sbjct: 33 YQDLLHFFPNRYVDRTQFHHINQLEASQAEVQIVGVITQIETITQKKGSRLVAKFLDNTG 92 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEA 158 + L++F + + +K + GKI + R M HP + N Q N ++A Sbjct: 93 AMELVWF-KGAKWIKESIKTNTPYVIFGKISVFQGRFNMAHPDMELLENYQANNRMGLQA 151 Query: 159 VYSLPTGLS-VDLFKKIIVEALSRL-----PVLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 +Y LS ++ + ++ A+ +L E + +L+ + A IH P Sbjct: 152 IYPSTERLSNANMGNRFMLRAMEQLFNECGSAFKETLSASILENLKLLQRSTALFHIHFP 211 Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALL---LMRKQFKKEIGIPINVEGKIAQKILRN- 268 + AK S A RL ++EL Q+ L+ L+RK KK G+P + G N Sbjct: 212 KDAK---MLSRAAARLKFEELFFIQLQLIRKNLVRK--KKIKGLPFSDVGAYFNDFYNNQ 266 Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 +PF T +Q+ +K+I D+ +M R+LQGDVGSGKT+VA++A+ A++ G QA +MA Sbjct: 267 LPFELTNAQKRVVKEIRTDVGSNAQMNRLLQGDVGSGKTIVAVMAILFALDNGFQACLMA 326 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P ILA QH++ + + I V ++TG++ ++ R+ LE + G+ ++IGTHAL +D Sbjct: 327 PTEILANQHFKGVSELLAPLGIHVALLTGSVRKSARKPLLESLEEGELKVLIGTHALLED 386 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISK 447 ++ Y L L I+DEQHRFGV QR KL K T PHVL+MTATPIPRTL ++ GD+DIS Sbjct: 387 NVVYKNLGLAIIDEQHRFGVAQRAKLWHKNTLPPHVLVMTATPIPRTLAMSIYGDLDISV 446 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 I E P GRK IKTV + V + +K + +G++ Y + P I E + +++ +++ + Sbjct: 447 IDELPPGRKEIKTVWRSDSHRLGVFKFIKEEILKGRQVYIVYPLINESEVLDYKDLMDGY 506 Query: 508 NSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 +S+ F + ++I+HG+M K M+ F G ++++ATTVIEVG++V +AS++I Sbjct: 507 DSISRSFPAPEFQVSIVHGQMKADAKAYEMERFVKGETQIMVATTVIEVGVNVPNASVMI 566 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624 IE+AE FGL+QLHQLRGRVGRG E S CIL+ +S+ TRL + + DGF IAE D Sbjct: 567 IESAERFGLSQLHQLRGRVGRGAEQSFCILMSGNKVSQEGKTRLETMVASSDGFEIAEVD 626 Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681 LK R G+++G +QSG+ + IA +LL+ AR+ A +L DP L S+ + I Sbjct: 627 LKLRGPGDLMGTQQSGVLQLKIADIVKDAALLKKAREVAVTVLKSDPSLDSIENKPI 683 >gi|299148213|ref|ZP_07041275.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_1_23] gi|298512974|gb|EFI36861.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_1_23] Length = 698 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 243/681 (35%), Positives = 368/681 (54%), Gaps = 43/681 (6%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + + L+K + + + DL++Y P +IDR I EI + + G I Sbjct: 14 GVGPQKAAVLNKELEIYSLH-----DLIYYFPYKYIDRSRIYYIHEIDGNMPYIQLKGEI 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 + ++R +DGTG + L++F +L I + GK RI Sbjct: 69 LGFETIGEGRQRRLTAHFSDGTGVVDLVWFQGIKYILGKYKLHEEYI-IFGKPTVFNGRI 127 Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190 + HP + ++ ++ YS + +E + + LPE + Sbjct: 128 NVAHPDVDKPDDLKLSSVGLQPYYSTTEKMKRSFLNSHAIEKMMATVIQQIQEPLPETLS 187 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSP-----ARERLAYDELLAGQIALLLMRK 245 LL + + EA IH P T+P A+ RL ++EL Q+ +L K Sbjct: 188 PKLLAEHHLMPLTEALRNIHFP--------TNPDVLRRAQYRLKFEELFYVQLNILRYAK 239 Query: 246 QFKKEIGIPINVEGKIAQKI--------LRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 +K G I +K+ +N+PF T +Q+ +K+I D+ +M R+ Sbjct: 240 DRQKR------YRGYIFEKVGDVFNTFYTKNLPFQLTGAQKRVLKEIRNDVGSGRQMNRL 293 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 LQGDVGSGKTLVAL++M A++ G QA +MAP ILA QHYE IK+ I VE++TG Sbjct: 294 LQGDVGSGKTLVALMSMLLALDNGYQACMMAPTEILANQHYETIKELLFGMDIRVELLTG 353 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 ++ R L + G I+IGTHA+ +D++ + L V++DEQHRFGV QR +L K Sbjct: 354 SIKGKRREAILAGLLTGDVQILIGTHAVVEDTVNFSSLGFVVIDEQHRFGVAQRARLWSK 413 Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PHVL+MTATPIPRTL +T GD+D+S I E P GRKPI T+ NR + + ++ Sbjct: 414 NVQPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPITTIHQFDNRRESMYRSVR 473 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMD 535 + EG++ Y + P I+E ++ + +++ E + + E F ++ +HG+M +K+ M Sbjct: 474 KQIDEGRQVYIVYPLIKESEKIDLKNLEEGYQHILEEFPKCTVCKVHGKMKPAEKDEQMQ 533 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F +G ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CIL+ Sbjct: 534 LFVSGKAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCILV 593 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDS 654 + L++++ RL ++ T DGF IAE DLK R G++ G +QSG+ L IA Sbjct: 594 TNYKLTEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIVRDGQ 653 Query: 655 LLEIARKDAKHILTQDPDLTS 675 LL+ R A+ I+ QDP S Sbjct: 654 LLQYVRAIAESIVEQDPAAQS 674 >gi|237714387|ref|ZP_04544868.1| ATP-dependent DNA helicase recG [Bacteroides sp. D1] gi|262408219|ref|ZP_06084766.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 2_1_22] gi|294646288|ref|ZP_06723940.1| ATP-dependent DNA helicase RecG [Bacteroides ovatus SD CC 2a] gi|294806775|ref|ZP_06765602.1| ATP-dependent DNA helicase RecG [Bacteroides xylanisolvens SD CC 1b] gi|229445551|gb|EEO51342.1| ATP-dependent DNA helicase recG [Bacteroides sp. D1] gi|262353771|gb|EEZ02864.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 2_1_22] gi|292638369|gb|EFF56735.1| ATP-dependent DNA helicase RecG [Bacteroides ovatus SD CC 2a] gi|294446057|gb|EFG14697.1| ATP-dependent DNA helicase RecG [Bacteroides xylanisolvens SD CC 1b] Length = 698 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 243/681 (35%), Positives = 368/681 (54%), Gaps = 43/681 (6%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + + L+K + + + DL++Y P +IDR I EI + + G I Sbjct: 14 GVGPQKAAVLNKELEIYSLH-----DLIYYFPYKYIDRSRIYYIHEIDGNMPYIQLKGEI 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 + ++R +DGTG + L++F +L I + GK RI Sbjct: 69 LGFETIGEGRQRRLTAHFSDGTGVVDLVWFQGIKYILGKYKLHEEYI-IFGKPTVFNGRI 127 Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190 + HP + ++ ++ YS + +E + + LPE + Sbjct: 128 NVAHPDVDKPDDLKLSSVGLQPYYSTTEKMKRSFLNSHAIEKMMATVIQQIQEPLPETLS 187 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSP-----ARERLAYDELLAGQIALLLMRK 245 LL + + EA IH P T+P A+ RL ++EL Q+ +L K Sbjct: 188 PKLLTEHHLMPLTEALRNIHFP--------TNPDVLRRAQYRLKFEELFYVQLNILRYAK 239 Query: 246 QFKKEIGIPINVEGKIAQKI--------LRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 +K G I +K+ +N+PF T +Q+ +K+I D+ +M R+ Sbjct: 240 DRQKR------YRGYIFEKVGDVFNTFYAKNLPFQLTGAQKRVLKEIRNDVGSGRQMNRL 293 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 LQGDVGSGKTLVAL++M A++ G QA +MAP ILA QHYE IK+ I VE++TG Sbjct: 294 LQGDVGSGKTLVALMSMLLALDNGYQACMMAPTEILANQHYETIKELLFGMDIRVELLTG 353 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 ++ R L + G I+IGTHA+ +D++ + L V++DEQHRFGV QR +L K Sbjct: 354 SIKGKRREAILAGLLTGDVQILIGTHAVIEDTVNFSSLGFVVIDEQHRFGVAQRARLWSK 413 Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PHVL+MTATPIPRTL +T GD+D+S I E P GRKPI T+ NR + + ++ Sbjct: 414 NVQPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPITTIHQFDNRRESMYRSVR 473 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMD 535 + EG++ Y + P I+E ++ + +++ E + + E F ++ +HG+M +K+ M Sbjct: 474 KQIDEGRQVYIVYPLIKESEKIDLKNLEEGYQHILEEFPKCTVCKVHGKMKPAEKDEQMQ 533 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F +G ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CIL+ Sbjct: 534 LFVSGKAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCILV 593 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDS 654 + L++++ RL ++ T DGF IAE DLK R G++ G +QSG+ L IA Sbjct: 594 TNYKLTEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIVRDGQ 653 Query: 655 LLEIARKDAKHILTQDPDLTS 675 LL+ R A+ I+ QDP S Sbjct: 654 LLQYVRAIAESIVEQDPAAQS 674 >gi|241895658|ref|ZP_04782954.1| ATP-dependent DNA helicase RecG [Weissella paramesenteroides ATCC 33313] gi|241871025|gb|EER74776.1| ATP-dependent DNA helicase RecG [Weissella paramesenteroides ATCC 33313] Length = 678 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 233/680 (34%), Positives = 384/680 (56%), Gaps = 38/680 (5%) Query: 3 PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62 PS L+ + S GVG K L+K+ DLL Y+P + D + Sbjct: 2 PSLLDSI----SELSGVGPKREQALNKL------GVFTIDDLLTYYPRRYNDLAQKLPSE 51 Query: 63 EISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118 + E+ VT G ++ S +K R +++ ++ T +I+ F+ + + KN+ Sbjct: 52 TLDGEK-VTFKGLVTSPPVVSRLGFKKTRLNFRLTVSHDTIQIS---FFNQPWLSKNIVV 107 Query: 119 EGRKITVTGKIKKLKNRI--IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIV 176 G ++ + G K + I + P +N + +EA+Y + K +I Sbjct: 108 -GEEVAIYGTYNKAHQSLSAIKMMPK---NNENE-----LEAIYPSSKEIKAGTIKDLIF 158 Query: 177 EALSRLPVL--PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234 +AL + L E I D+ ++ + + +H P +F AR ++ E Sbjct: 159 QALGKYGDLLTQEIIPSDIRRRYRLMNYHDTVFGMHAPEN--EF-LAGEARRTASFMEFF 215 Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 Q+ L ++++ + G +N + + + ++ +PF T +Q+ + +I++DM + M Sbjct: 216 VFQMRLQVIKQMDRHNQGRSVNFDNQQLKSFIKVLPFELTAAQKKVVNEIVRDMRRPVHM 275 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R+LQGDVGSGKT+VA +AM AA+ AG QA +MAP ILAQQH I Y +++ VEI Sbjct: 276 NRLLQGDVGSGKTVVAALAMYAAITAGMQATLMAPTEILAQQHARTIGNYFDPSEVRVEI 335 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 +TG A RR+ L +A G I+IGTHAL Q I ++ L L ++DEQHRFGVQQR L Sbjct: 336 LTGTTKAAARRQILADLAEGDIDILIGTHALIQPDIAFHNLGLAVIDEQHRFGVQQRATL 395 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 + P +L MTATPIPRTL +T+ G++D+S I + PAGRK IKT + N+I + I+ Sbjct: 396 RKVGVNPDILAMTATPIPRTLAITAYGEMDVSIIDQLPAGRKKIKTYWLRHNKIAKAIQF 455 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKES 532 +K L+ G +AY + P IEE + + ++ + L +F ++ ++HGR+S+ +K++ Sbjct: 456 VKEQLASGAQAYVVTPLIEESETLDVQNAQAVYEELSTYFAPKFNVGLLHGRLSNDEKDT 515 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 VM +FK ++L+ATTVIEVG+DV +A++++I +A+ FGL+QLHQLRGRVGRGE + Sbjct: 516 VMTAFKANEFQVLVATTVIEVGVDVPNATVMLILDADRFGLSQLHQLRGRVGRGERQAYT 575 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 L+ P ++ R+ + T DGF++A++DL+ R G++LG +QSG+P+F + P Sbjct: 576 FLVSDPK-TQYGIDRMEAMVETTDGFVLAQKDLELRGAGDVLGNRQSGVPEFRVGDPIAD 634 Query: 653 DSLLEIARKDAKHILTQDPD 672 +++ +A+++A I++Q PD Sbjct: 635 LAMMNVAQEEAIEIVSQ-PD 653 >gi|332654548|ref|ZP_08420291.1| ATP-dependent DNA helicase RecG [Ruminococcaceae bacterium D16] gi|332516512|gb|EGJ46118.1| ATP-dependent DNA helicase RecG [Ruminococcaceae bacterium D16] Length = 694 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 230/687 (33%), Positives = 367/687 (53%), Gaps = 41/687 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL+ F GVG S L K+ TR DL+ Y P + DR KI I Sbjct: 5 LNTPLTDFPGVGPARSAKLEKL------GLTRVRDLMTYFPRDYEDRR---KIWSIRSAP 55 Query: 69 I---VTITGYISQHSSFQLQKR--RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123 + V + ++H ++ K+ D G + + FF ++ G + Sbjct: 56 LGVKVCVQAMAAEHPRLSRIRKGMELVKVKAVDHAGALHITFF--NQSYVERAIQAGEEY 113 Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKII---VEALS 180 G +++ +R MV+P + + Q V I VY L G+S L +I VEA + Sbjct: 114 VFWGVVEEQGSRRTMVNPIFERTDRQAVTG-CILPVYPLTAGISNHLLCSLIRPAVEACA 172 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 +PE + + + + +F IH P + + AR RL ++EL L Sbjct: 173 SQ--MPESLPRSVRLEHELAQTEFSFRNIHFPDSPESLDL---ARRRLTFEELFYLSTGL 227 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 +++ + G V + ++ L +PF PT++Q + ++ D+S M R++QG Sbjct: 228 AMLKHRRGDAAGR--VVPSRPLEEFLSLLPFPPTQAQRRVMGEVAADLSSGRSMNRLVQG 285 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA A ++G Q +MAP +LAQQH + + + V ++TG+ Sbjct: 286 DVGSGKTVVAAWGAYLAAKSGMQTALMAPTEVLAQQHARSLSALLEPAGVRVGLLTGSFT 345 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 A +++ + IA G +++GTHAL ++++ L L++ DEQHRFGV QR L K A Sbjct: 346 PAQKKRLRQAIAQGDVDLVVGTHALISQDVEFHDLGLMVADEQHRFGVAQRSALAAKGHA 405 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 PHVL+M+ATPIPRTL L GD+D+S I + P GR P++T ++ ++ + ++ ++ Sbjct: 406 PHVLVMSATPIPRTLALIIYGDLDVSVIDQLPPGRTPVETYVVHEDKRQRMYNFVRKLVG 465 Query: 481 EGKKAYWICPQIEEK-KESNFRSVVERFNSLH------EHFTSSI------AIIHGRMSD 527 EG++AY ICP +E++ E N F L +H + A++HG+M Sbjct: 466 EGRQAYIICPAVEDRTAEDNPDGDPSPFADLKAVKSYAQHLQDEVFPDLRLALLHGKMRP 525 Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587 +K++VM +F G +L++TTV+EVG+DV +A++II+ENAE FGL+QLHQLRGRVGRG+ Sbjct: 526 REKDAVMAAFAAGDVDVLVSTTVVEVGVDVPNAALIIVENAERFGLSQLHQLRGRVGRGK 585 Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 S C+L+ + ++++ TRL L +T DGF I+EEDLK R G+ G +Q G+P+ +A Sbjct: 586 HQSYCVLITN-SHAQDAMTRLKTLASTTDGFKISEEDLKLRGPGDFFGSRQHGLPQLALA 644 Query: 648 QPELHDSLLEIARKDAKHILTQDPDLT 674 LL+ A++ A+ +L DP L+ Sbjct: 645 DLSGDMRLLQQAQQSARQLLQNDPTLS 671 >gi|170730951|ref|YP_001776384.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa M12] gi|167965744|gb|ACA12754.1| ATP-dependent DNA helicase [Xylella fastidiosa M12] Length = 718 Score = 369 bits (947), Expect = e-99, Method: Compositional matrix adjust. Identities = 237/658 (36%), Positives = 365/658 (55%), Gaps = 43/658 (6%) Query: 52 FIDRHYRPKISEISEERIVTITGYI-SQHSSFQLQKRRPY-KILLNDGTGEI-TLLFFYR 108 + DR I+E+ + V I + + SF + RP +++L+D I T+ FF+ Sbjct: 52 YEDRTRLTPIAELQDGVAVQIEARVEAVERSF---RYRPLLRVVLSDDAHHILTMRFFHF 108 Query: 109 KTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGL 166 + + F G ++ G K + +VHP Y I + V+ ++ VY + G+ Sbjct: 109 RAAQIAR-FTVGTRVRAYGVPKLGQYGWEIVHPSYRILAPGEAVSLNDCLDPVYPVIDGV 167 Query: 167 SVDLFKKIIVEALSRLP------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE- 219 + +++I EAL LP +LP+ DL P++ A I+H P D Sbjct: 168 GPAIVRQLIREALEHLPTDAVLELLPDVWLSDL----GLPTLRTALLIMHRPPLDADIAR 223 Query: 220 ---WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276 T PA++RL+ +ELLA Q++L R ++ + + +L +PF T + Sbjct: 224 LMVGTHPAQQRLSLEELLAHQLSLRRQRIALQRHSAPALPDGAALVASLLHALPFHLTAA 283 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q+ I D+++ MLR++QGDVGSGKT+VA +A AVE Q + AP +LA+Q Sbjct: 284 QQRVFAQIAADVAKPVPMLRLVQGDVGSGKTVVAALAALLAVEQNKQVALAAPTALLAEQ 343 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 H+ ++ + + + V + + R +AL +A G A +++GTHAL Q+S+ ++ L Sbjct: 344 HFINLRDWLEPLGVRVHWLAAKVTGKARLQALNDVASGDAQVVVGTHALMQESVVFHDLA 403 Query: 397 LVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452 L IVDEQHRFGV QRL L K PH L+MTATPIPRTL + + D+D+S I E P Sbjct: 404 LTIVDEQHRFGVHQRLLLRDKGAIAGIVPHQLVMTATPIPRTLAMAAYADLDVSVIDEMP 463 Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--------ESN---FR 501 GR P++T ++ R E++ER+++ ++G++ YW+C I+E + SN R Sbjct: 464 PGRTPVQTNVLSAERRPELVERIRLACAQGRQVYWVCTLIDESQTEAEQAPPSSNDIGHR 523 Query: 502 SVVERFNSLHEHFTSS-----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556 S V+ + +E ++ + ++HGRM +K+ M +FK +L+ATTVIEVG+D Sbjct: 524 SEVQAAQATYEALSAQLPGVRVGLVHGRMKAAEKQRTMRAFKYNEIDVLVATTVIEVGVD 583 Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616 V +AS++IIENAE GLAQLHQLRGRVGRG +SSC+LLY PPLS + RL +++ T D Sbjct: 584 VPNASLMIIENAERLGLAQLHQLRGRVGRGSVVSSCVLLYQPPLSMLARQRLQIMRQTND 643 Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 GF IAE+DL+ R GE+LG +Q+G+ F +A LL A +L + P L Sbjct: 644 GFAIAEKDLELRGPGELLGTRQTGLAAFRVADLARDAHLLPRVYSLANVLLDESPQLA 701 >gi|170758229|ref|YP_001787810.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A3 str. Loch Maree] gi|169405218|gb|ACA53629.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A3 str. Loch Maree] Length = 679 Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 247/681 (36%), Positives = 388/681 (56%), Gaps = 44/681 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSS--FIDRHYRPKISEISE 66 +++P++T +GVG K L K C N +DLL Y P FID + + K+ +S+ Sbjct: 3 VYSPITTLKGVGPKTKEQLEK---CMIFN---IMDLLLYFPRDYEFIDNYSKDKL--LSK 54 Query: 67 ERIVTITGYISQHSSFQLQKR-RPYKIL----LNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + I+ + Q + + R R KIL NDG I +F + +KN F G Sbjct: 55 KVIIKV-----QVENIKRDLRTRTGKILTTIIFNDGEKAIVGSWFNQP--YIKNYFKIGE 107 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 + + G +K+ + + + + I N +++V I Y L L+ +L K++ L Sbjct: 108 EYVLQGSLKEYRGNLTINNAQ-ILKNKYTEEVGERNIIPKYPLKGDLNNNLLIKLVDSVL 166 Query: 180 SRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 + + + LP W L++K F S+ ++ IH P K+ E + RL + ELLA Sbjct: 167 TNIDIGENLPRW----LIEKYKFLSLDKSIRTIHKPENQKELE---ESIRRLKFQELLAY 219 Query: 237 QIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 + + +++ + GI V +I ++ +PF T +Q +++I +D ++ M Sbjct: 220 CLKIAFLKEYLETATKGISFIVSEEI-NNLIEALPFKLTNAQNKVLQEIFKDQKREKPMN 278 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R+LQGDVGSGKT++ALI++ + G Q V++AP ILA QHYE K ++ + +E++ Sbjct: 279 RLLQGDVGSGKTIIALISLFNVIRNGYQGVMLAPTEILAVQHYEEALKLFKDFNLNIELL 338 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 G++ + +++ E++ G+ +IIGTHAL +D +++Y L +VI DEQHRFGV QR K+ Sbjct: 339 VGSIKVSSKKEIKEKLKEGKIDLIIGTHALIEDDVEFYNLGMVITDEQHRFGVMQRSKML 398 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 K + L+M+ATPIPR+L L+ GD+D+S I E P GR+ I T + + V Sbjct: 399 NKGKSVDTLVMSATPIPRSLTLSLYGDLDLSIIDELPPGRQKIDTYYVNDSYRKRVYNFA 458 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-SIAIIHGRMSDIDKESV 533 ++ G++ Y +CP +EEK+E N SV + ++ L E+F IAI+HG+M +K+++ Sbjct: 459 LKEINNGRQVYIVCPLVEEKEELNLNSVEKLYDDLKGEYFKEVEIAILHGKMKGKEKDNI 518 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M FK G K LI+TTVIEVG++V +A+++IIENAE FGLAQLHQLRGRVGRG+ S CI Sbjct: 519 MKDFKEGKIKALISTTVIEVGVNVPNATLMIIENAERFGLAQLHQLRGRVGRGKHKSYCI 578 Query: 594 LLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 L+ KN R+ ++K++ DGFL+AEEDLK R GEI G KQ G L+A Sbjct: 579 LIAR---VKNDIIRKRMEIMKSSNDGFLVAEEDLKLRGGGEIFGFKQHGSSNLLLADVIE 635 Query: 652 HDSLLEIARKDAKHILTQDPD 672 LL IA ++K I+ + + Sbjct: 636 DIHLLRIANTESKKIIDSNNE 656 >gi|255281781|ref|ZP_05346336.1| ATP-dependent DNA helicase RecG [Bryantella formatexigens DSM 14469] gi|255267848|gb|EET61053.1| ATP-dependent DNA helicase RecG [Bryantella formatexigens DSM 14469] Length = 685 Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 236/691 (34%), Positives = 372/691 (53%), Gaps = 27/691 (3%) Query: 12 PLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKI---SEISE 66 PL +G+G+K L K I N G DLL Y+P ++ R + P+I S++ E Sbjct: 6 PLDELKGIGEKTKLVFEKAGIRNLG--------DLLSYYPRTY--RRF-PEITDTSQVKE 54 Query: 67 ERIVTITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 R + I + + Q KR + +L D G I + ++ L+N G Sbjct: 55 GREIAIYAAPERTLTVQYVKRMQIVSAVLCDKAGAIGVRWY--NMPYLRNTIKPGGYHVF 112 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 G+I + + + P ++ VY L GL+ L K + +AL + + Sbjct: 113 CGRIVQKGANLFLEQPAIYTPEQYQKLLAELQPVYVLTKGLTNQLVSKTVRQALDGMELS 172 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 +++ +D+ ++ A IH P +D + AR RL +DE +AL ++ Sbjct: 173 GDYLPEDIRRRYQLADYRNAIEEIHFP---QDEQHMKIARRRLVFDEFFLFILALRQFKE 229 Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 Q ++ + ++RN+ + T +Q+ +DI +DM+ + R++QGDVGSG Sbjct: 230 QHEQAKNPYTIRRTPLTDTVIRNLGYELTGAQQRVWEDIQRDMTGEKVAARLIQGDVGSG 289 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY--TQNTQIIVEIITGNMPQAH 363 KT++A +AM A E G Q+ +M P +LA+QH++ + + Q+ + ++TG+M Sbjct: 290 KTILAFLAMILAAENGLQSALMVPTEVLARQHFDSMTELIEAQHLRFCPVLLTGSMTARE 349 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 +R A E+IA G+A +IIGTHAL Q+ +QY ++ LVI DEQHRFGV+QR L +K PH Sbjct: 350 KRVACEKIASGEADMIIGTHALIQEKVQYKRMGLVITDEQHRFGVRQRELLGEKGAEPHT 409 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+M+ATPIPRTL + GD++IS I E P R PIK ++ + ++ + G Sbjct: 410 LVMSATPIPRTLAVILYGDLEISVIDELPKSRLPIKNCVVNTTYRKKAYHFIEKEIRLGH 469 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGT 541 +AY ICP +EE ++ V+ L E I I +HG+M +K VM+ F G Sbjct: 470 QAYIICPMVEENEQIEAEDVISYTERLREVMPEDIRIEYLHGKMKPKEKNEVMERFLCGD 529 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTV+EVG++V +A++++IENAE FGLAQLHQLRGRVGRG+ S CI++ + Sbjct: 530 IQVLVSTTVVEVGVNVPNATVMMIENAERFGLAQLHQLRGRVGRGKAQSYCIMISSTD-N 588 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 + + RL +L ++ DGF IA EDLK R G+ILG++QSG+ +F +A +L+ A + Sbjct: 589 EKTRKRLEILNHSNDGFFIASEDLKLRGPGDILGVRQSGLMEFKLADVFADAKILQNACE 648 Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692 A IL D L + + L Y NE Sbjct: 649 AADVILKHDSALQAPENAELHNKLENYLSNE 679 >gi|253578691|ref|ZP_04855962.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849634|gb|EES77593.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 684 Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 236/689 (34%), Positives = 386/689 (56%), Gaps = 32/689 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP-KISEISEERIVT 71 L T +GVG+K +KI T LL Y+P ++ D + P +I + E +V Sbjct: 5 LRTLKGVGEKTEKLFAKI------GVTDMESLLSYYPRNY-DAYEEPVEIRSLEEGAVVA 57 Query: 72 I-----TG-YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 I TG Y++Q + Q+ + D TG+I++ +F L++ +G + + Sbjct: 58 ISVAVITGVYVNQVRNLQV-----ITTTVADLTGKISVTWF--NAPYLRSAVRKGSRFVL 110 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 G++ + + ++ M HP + + ++ +Y L GLS K+I + L + Sbjct: 111 RGRVVRKQGKLQMEHPEIFTPAAYEEILHSLQPIYGLTAGLSNKTIVKLIHQVLDEQKLQ 170 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 E++ + ++ A IH P K+ + AR RL +DE L +A+ +++ Sbjct: 171 TEYLADEYKERYHLADRNFAIPAIHFP---KNMQELLAARRRLVFDEFLLFILAVQSLKE 227 Query: 246 QFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 + ++ P++ Q I+ ++P+ TK+Q + +I +D+S + M R++QGDVGS Sbjct: 228 KTEEAPNAFPMHPVWTTEQ-IIESLPYDLTKAQLNVWHEIERDLSGQALMSRLVQGDVGS 286 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE---IITGNMPQ 361 GKT++A +AM VE G QAV+MAP +LA+QH++ ++K Q I ++TG+ Sbjct: 287 GKTILAFLAMIMTVENGYQAVLMAPTEVLARQHFQAMEKLLQEQNIDFGHPVLLTGSDTA 346 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 +R+ IA +A+++IGTHAL Q+ +QY L LVI DEQHRFGV+QR LT P Sbjct: 347 KEKREKYVLIASKEANLVIGTHALIQEKVQYNNLGLVITDEQHRFGVKQREALTTMGNPP 406 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 +VL+M+ATPIPRTL + GD+DIS I E PA R PIK ++ + + ++ + + Sbjct: 407 NVLVMSATPIPRTLAIIIYGDLDISVIDELPAQRLPIKNCVVDTSYRPKAYSFMEKQIRQ 466 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKN 539 G++ Y ICP +EE + + +V++ L F+ I I +HG+M +K +M++F Sbjct: 467 GRQVYVICPMVEESEGMDGENVLDYTLKLRNVFSPDIKIASLHGKMKAKEKNVIMEAFAA 526 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G ++L++TTV+EVG++V +A+++++ENAE FGLAQLHQLRGRVGRGE S CI + Sbjct: 527 GEIQILVSTTVVEVGVNVPNATVMMVENAERFGLAQLHQLRGRVGRGEYQSYCIFM-QGN 585 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 +K RL +L + DGF IA EDLK R G++ GI+QSG+ +F + +L+ A Sbjct: 586 GAKEISKRLQILNKSNDGFYIAGEDLKLRGPGDLFGIRQSGLLEFKLGDIYQDADILKAA 645 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLY 688 + A IL+ D DL+ + + ++ L Y Sbjct: 646 SETASEILSLDGDLSLPQNEELQRRLSAY 674 >gi|257467948|ref|ZP_05632044.1| ATP-dependent DNA helicase recG [Fusobacterium ulcerans ATCC 49185] gi|317062234|ref|ZP_07926719.1| ATP-dependent DNA helicase [Fusobacterium ulcerans ATCC 49185] gi|313687910|gb|EFS24745.1| ATP-dependent DNA helicase [Fusobacterium ulcerans ATCC 49185] Length = 686 Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 224/605 (37%), Positives = 354/605 (58%), Gaps = 14/605 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEI-SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101 DL +Y P ++ DR KI ++ +E +V ++ + + K D TG + Sbjct: 39 DLFYYFPRAYDDRTNIMKIGDLRGDEYVVLKATLLTVSAPPTRSGLKMVKATATDNTGIL 98 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVY 160 L++F + L+ G + G+IK+ +V+P + + N Q + I +Y Sbjct: 99 ELVWF--QMPYLRKTLKIGEEYIFIGQIKR-GYVYQLVNPEFKLSSNQQKLEAGEILPIY 155 Query: 161 SLPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 S + + +K++ EA+ S+L + E I +++L+K A IH P +K+ E Sbjct: 156 STSKEIPQNTLRKLMKEAMKSKLYIFQENIPEEILKKYKVMDRERAMKEIHFPSNSKNLE 215 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK--IAQKILRNIPFSPTKSQ 277 A+ R A +ELL ++ +L R + + +E K + ++ L N+ FS TK+Q Sbjct: 216 ---EAKRRFAIEELLVLEMGILQKRFEMDSQNTSKYELEDKKTLVKQYLENLTFSLTKAQ 272 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + I +I +D+S + R++QGDVGSGKT+V+++ + VE Q V+MAP ILA QH Sbjct: 273 KKVITEIYRDLSNGRIINRLIQGDVGSGKTIVSMVLLLYMVENSYQGVLMAPTEILAVQH 332 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y +K + + VE++TG+ ++K L+ I G+ I+IGTHAL ++++++ +L L Sbjct: 333 YLSVKDKFEKLGVRVELLTGSFKGKAKQKLLDSIKEGEVDIVIGTHALIEENVEFERLGL 392 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +I+DEQHRFGV QR L K ++++M+ATPIPR+L L+ GD+D+S I E P GRKP Sbjct: 393 IIIDEQHRFGVVQRKLLRDKGVLANLVVMSATPIPRSLALSIYGDLDVSVIDELPPGRKP 452 Query: 458 IKT-VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 IKT I I+ + E + LS+G++AY++ P IEE ++ +S E + ++ Sbjct: 453 IKTKWIATIDETKTMYEFIGKKLSQGRQAYFVAPLIEESEKLAAKSTEELLEEVSKYLPD 512 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 I ++HGRM + +K+ VM FKN ++++TTVIEVG+DV +A++++I NAE FGL+ Sbjct: 513 YRIGVLHGRMKNAEKDEVMSRFKNKELDIMVSTTVIEVGVDVPNATVMVINNAERFGLSA 572 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRGE S C L+ + S +RL V++ T+DGF IAEEDLK RK GEI G Sbjct: 573 LHQLRGRVGRGEYQSYCFLVSRTD-NAVSKSRLQVMEETQDGFKIAEEDLKLRKSGEIFG 631 Query: 636 IKQSG 640 KQSG Sbjct: 632 TKQSG 636 >gi|163782095|ref|ZP_02177094.1| ATP-dependent DNA helicase RecG [Hydrogenivirga sp. 128-5-R1-1] gi|159882627|gb|EDP76132.1| ATP-dependent DNA helicase RecG [Hydrogenivirga sp. 128-5-R1-1] Length = 670 Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 230/632 (36%), Positives = 359/632 (56%), Gaps = 30/632 (4%) Query: 87 RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFH 146 R +++ DG E+ L F ++K + + ++ +G + V GK+K +VHP + Sbjct: 43 RYTVEVVCTDGNDEVKLKFRFKKNDFVFALYRKGSDVVVQGKLKSFNREKYIVHPELLKA 102 Query: 147 NSQDVNFPLIEA-VYSLPTGLSVDLFKKIIVEALSRL-----PVLPEWIEKDLLQKKSFP 200 FP+ T +S + I AL + P LPE++ + L +K FP Sbjct: 103 GEYGEIFPIYYVRTKGEVTSISSKTRQNRIRNALRKTVQKTAPYLPEYLPESLRRKYGFP 162 Query: 201 SIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKE----IG 252 + E ++H P K D + ++ P R YD+L Q++LLL +K+ + E I Sbjct: 163 EVDETVELLHIP-KGVDLKSLNSFSDPYHRRAIYDDLFLFQLSLLLKKKETELENSPKIE 221 Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312 +P++ + + + F T +Q +++IL DM +++ M R+LQGDVGSGKT+VA+ Sbjct: 222 VPVD---RFIAEFQSKLSFKLTGAQLRVLREILTDMGREHPMNRLLQGDVGSGKTVVAIG 278 Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372 A AAV+ G Q +M P ILA QHY K++ + + V ++TG++ + ++ A I Sbjct: 279 AALAAVKKGYQVAVMVPTEILAHQHYRKFKEFFEKEGVEVGLLTGSLTPSQKKSAYRHIK 338 Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATP 430 G +++GTHAL Q+ +++ +L LV++DEQHRFGV QR L +K PH L+M+ATP Sbjct: 339 EGNIKVVVGTHALIQERLEFNRLGLVVIDEQHRFGVMQRKLLLEKGGGLYPHCLVMSATP 398 Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490 IPRTL L+ GD+DIS I E P GRK ++T+++ + D++++ + LS G K Y I P Sbjct: 399 IPRTLALSVYGDLDISVIDELPPGRKEVRTLLLYESERDKLLQAINRELSLGNKVYVIYP 458 Query: 491 QIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549 IEE ++ E + ++ ++HGRMSD +K+ VM+ FK +L++TT Sbjct: 459 LIEESDRVELKAATEEYEKWKSLLPDRNVLLLHGRMSDGEKQEVMERFKE-EGDVLVSTT 517 Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK---NSYT 606 VIEVGIDV +A++++IE+A FGL+QLHQLRGRVGR + S C L+ L + ++ Sbjct: 518 VIEVGIDVPEATLMVIEDAHRFGLSQLHQLRGRVGRSDRPSYCYLVVPDDLKRGDIDALK 577 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ-PELHD-SLLEIARKDAK 664 RL VL T DGF +AE D+K R GE+LG+ QSG F +A HD ++L+ AR+DA+ Sbjct: 578 RLKVLVRTNDGFEVAEMDMKLRGPGELLGVSQSGYFGFNVANLARSHDRAVLQNAREDAQ 637 Query: 665 HILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696 +L +DP L G L LY+Y + Sbjct: 638 SLLEEDPRLD---GHPDLKELLLYRYGDKLDL 666 >gi|229061458|ref|ZP_04198803.1| ATP-dependent DNA helicase recG [Bacillus cereus AH603] gi|228717881|gb|EEL69529.1| ATP-dependent DNA helicase recG [Bacillus cereus AH603] Length = 682 Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 236/675 (34%), Positives = 379/675 (56%), Gaps = 57/675 (8%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G + S L ++ ++ LL + P + D + ++E+ + VT Sbjct: 8 PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G + Q ++ ++ + G IT + F R K +T+TGK Sbjct: 61 VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRP--YYKQKLNLDETVTITGKW 118 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNF-PLI-----EAVYSLPTGLSVDLFKKIIVEAL---- 179 + + I + ++NF P++ E VYS+ L+V ++ + +A Sbjct: 119 DQHRQTIAV----------SELNFGPVVRQQEVEPVYSVKGKLTVKQMRRFVAQAFKEYG 168 Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 S + VLP+ LL + S EA +H P +D + AR R Y+E Q+ Sbjct: 169 DSIVEVLPD----GLLSRYKLLSRYEALRGLHFPVGQEDLK---QARRRFVYEEFFLFQL 221 Query: 239 ALLLMRKQ-------FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 + +RK KKEI + VE Q+ +PF T +Q + +I++DM Sbjct: 222 KMQTLRKMERENSKGTKKEISL---VE---LQEFTDALPFPLTGAQRRVVDEIMKDMISP 275 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351 RM R+LQGDVGSGKT+VA IA+ AA A Q +M P ILA+QHY+ + + + + Sbjct: 276 YRMNRLLQGDVGSGKTVVAAIALYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMK 335 Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411 VE++T ++ A RR+ L + G+ I++GTHAL QD + +++L LVI DEQHRFGV QR Sbjct: 336 VELLTSSVKGARRREILSTLEQGEVDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQR 395 Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471 L +K +P VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D V Sbjct: 396 RVLREKGESPDVLFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRV 455 Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDID 529 + ++ + +G++AY ICP IEE ++ + ++ ++ + L H+ + ++HGR+S + Sbjct: 456 LGFVEKEIKKGRQAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQE 515 Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589 KE +M F ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E Sbjct: 516 KEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQ 575 Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649 S C+L+ P S+ R+ ++ T DGF+++E+DL+ R G+ G KQSG+P+F +A Sbjct: 576 SYCLLIADPK-SETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM 634 Query: 650 ELHD-SLLEIARKDA 663 +HD LE AR+DA Sbjct: 635 -VHDYRALETARQDA 648 >gi|226355891|ref|YP_002785631.1| ATP-dependent DNA helicase RecG [Deinococcus deserti VCD115] gi|226317881|gb|ACO45877.1| putative ATP-dependent DNA helicase RecG [Deinococcus deserti VCD115] Length = 780 Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 232/665 (34%), Positives = 361/665 (54%), Gaps = 25/665 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILL-------N 95 D+L +P DR P ++E+ E + VT+ G + S +R P +L Sbjct: 130 DVLHAYPHRHEDRRALPDLAEVEEGQKVTVEGTVVAKS-----RRSPRPGMLVIEVTLET 184 Query: 96 DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQD-VNF 153 G + +F + ++ EG ++ +TG++K+ + + H +QD ++ Sbjct: 185 PSGGRVKATWFNQP--WVERQLREGARLVLTGRVKRFGRNVQLGVEHLETVDGAQDSLST 242 Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213 I VY G+S + ++ +L +P L +++ QK +++A IH P Sbjct: 243 GRIVGVYDSKEGISQEFLRRAAFRSLQSVP-LDDYLPAHWRQKYGITDLSDALWGIHFP- 300 Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 D S A RL +DE L ++ +LL + + G G ++ +PF Sbjct: 301 --ADEAQLSRANARLRFDEYLFLELRMLLQGEDAVLQ-GKRFEARGDDIERFESVLPFRM 357 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T +Q + +I DM + +M R++QGDVGSGKT VA A+ AV G Q +MAP IL Sbjct: 358 TNAQRRVLLEITDDMRSERQMARLVQGDVGSGKTAVAACALYLAVRDGYQGALMAPTEIL 417 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QHY + Y + V ++ G M + + RIA G+ +++GT AL Q+++Q+ Sbjct: 418 ARQHYNNLVGYLNQLDVRVGLLIGAMAAKQKLEMQTRIARGEVDVVVGTQALIQENVQFD 477 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L L ++DE+HRFGVQQR KL A P VL+M+ATPIPR+L LT+ GD+++S I E P Sbjct: 478 NLGLAVIDEEHRFGVQQRRKLL--AGRPDVLVMSATPIPRSLALTAYGDLELSVIDEMPP 535 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 GR PI+T +I + + + EG++A+ + I+E + + + + L Sbjct: 536 GRTPIETKLIQDTHRTQAYGFVMRQIREGRQAFVVTALIDENENLELLAATQLADDLKTI 595 Query: 514 FTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 + I ++HGRMS +K+ VM+ F+ LL++TTVIEVG+DV +A++++IENAE FG Sbjct: 596 LPEARIDLLHGRMSAAEKDHVMERFRAREFDLLVSTTVIEVGVDVPNATVMVIENAERFG 655 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 LAQLHQLRGRVGRG S C+L+ SK + RL +++ + DGF+IAE DLK R GE Sbjct: 656 LAQLHQLRGRVGRGSAQSYCVLIAGEH-SKKTRQRLGIIEGSTDGFVIAEADLKLRGPGE 714 Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692 I G +QSG+P +A S++E AR+ AKHIL DP L R Q +R L ++ Sbjct: 715 IRGTRQSGIPDLRLADLANDTSIIEQARELAKHILAHDPRLEHPRLQYLRAELQSRSHSV 774 Query: 693 AFQFI 697 AF+ + Sbjct: 775 AFREV 779 >gi|302874760|ref|YP_003843393.1| ATP-dependent DNA helicase RecG [Clostridium cellulovorans 743B] gi|302577617|gb|ADL51629.1| ATP-dependent DNA helicase RecG [Clostridium cellulovorans 743B] Length = 687 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 245/675 (36%), Positives = 375/675 (55%), Gaps = 34/675 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 +++ + +GVG K L+K G N +DLL Y P + + I+ I+ + Sbjct: 9 IYSDIKNLKGVGPKALQLLNK---SGIYN---LLDLLLYFPREYENITSSEDITNINGKE 62 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 + I + + + K + GE T + +K +F ++ T+ G+ Sbjct: 63 KLKIKCKVLRIFPDKRTKTGKTITTIAFSDGENTFYGKWFNQPYVKKKYFIDKEYTLIGE 122 Query: 129 IKKLKNRIIMVHP-HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--- 184 +KK+ + +P + ++ + I Y L GL+ + F K+I L + + Sbjct: 123 VKKVGKDYEISNPKDFKEKEDKEKSDKNIIPKYPLKAGLTNNFFIKLITSILEAMFIREN 182 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LPEWI ++K S+ A IH P++ A RL + EL + +L+++ Sbjct: 183 LPEWI----IEKYKLCSLDYAIRNIHYPKEENAL---RAAERRLKFQELFTYSLKILMLK 235 Query: 245 KQFKKEIGIPINVEG---KIAQKI--LRN-IPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 + K N EG KIA ++ L+N +PF T +Q A+++IL DM + M R+L Sbjct: 236 EYVKS------NKEGIAFKIAPELVDLKNSLPFQLTDAQSKAVREILSDMKKPTPMNRLL 289 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY-EFIKKYTQNTQIIVEIITG 357 QGDVGSGKT+VALIA+ A + Q V+MAP ILA QHY EFI+ I +E++TG Sbjct: 290 QGDVGSGKTIVALIALFNAAKNQYQGVLMAPTEILANQHYHEFIR-IMAPFNIKIELLTG 348 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 + + + + E I G+ I+IGTHAL +D +Q+ L +++ DEQHRFGV QR KL K Sbjct: 349 STTKKQKERIKEEIKGGKIDILIGTHALIEDDVQFENLGIIVTDEQHRFGVMQRNKLFNK 408 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 VL+MTATPIPRTL L GD+++S I + P GR+ I+T + D + E K Sbjct: 409 GKNIDVLVMTATPIPRTLALYLYGDLEVSIIDQLPPGREKIETKHGTKKQRDNIYEFSKK 468 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMD 535 + EG++ Y +CP +E+ + + +SV F L E + ++ IHG+MS DK+ VM+ Sbjct: 469 SIKEGRQVYVVCPLVEDNEVLDLKSVEALFIELKESYFKDYNVGFIHGKMSPKDKDKVMN 528 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FKN ++L+ATTVIEVGI+V +A+I+IIENAE FGLAQLHQLRGRVGRG+ S C L+ Sbjct: 529 EFKNKETQILVATTVIEVGINVPNANIMIIENAERFGLAQLHQLRGRVGRGQYKSYCFLI 588 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 SK + R+ +++ + DGF IAEEDLK R GE+ G++QSG L++ ++ Sbjct: 589 ADTK-SKVTEKRMKIMEQSNDGFFIAEEDLKIRGTGEVFGLRQSGENGLLLSDVIEDINI 647 Query: 656 LEIARKDAKHILTQD 670 L+ A K+AK ++ + Sbjct: 648 LKCANKEAKELVASE 662 >gi|312897745|ref|ZP_07757161.1| ATP-dependent DNA helicase RecG [Megasphaera micronuciformis F0359] gi|310621129|gb|EFQ04673.1| ATP-dependent DNA helicase RecG [Megasphaera micronuciformis F0359] Length = 677 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 235/635 (37%), Positives = 352/635 (55%), Gaps = 23/635 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEIS--EERIVTITGYISQHSSFQLQKRRPY---KILLNDG 97 DL+ Y P ++ DR I +IS ++R V + G + S +L+ RR K+L++DG Sbjct: 29 DLVQYFPRAYEDRSKIRAIKDISNNDDRPVLVNGTVK--SVVELRPRRGMTILKVLISDG 86 Query: 98 TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157 TG + L++F + + K +F G+ + GK ++ R+ M P V L+ Sbjct: 87 TGGLELVWFNQPFK--KRLFKVGKDVHAFGKTERAYGRLQMNSPEA--EPGPAVPGGLV- 141 Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL-LQKKSFPSIAEAFNIIHNPRKAK 216 VY+L GL ++ + + + + I L L + E + +H P Sbjct: 142 PVYALTEGLRQADVRRAVAALFADEASVKDLIPPCLSLDIQGTEVSVETYKALHFP---A 198 Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276 FE AR+RLA++EL A Q LLL R+ + + GK+ + +L N+PF TK Sbjct: 199 SFEALERARKRLAFEELFALQAGLLLKRRAEQSGQAVKFGPNGKLIKGLLNNLPFLLTKG 258 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q A DI+ D + M R++QGDVGSGKT+VA +A+A AVE G Q +MAP GILA Q Sbjct: 259 QTEAFADIVNDTETQVPMQRLVQGDVGSGKTVVAALALAKAVENGYQGALMAPTGILAIQ 318 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 HYE + + ++ + + ++TG R L++ AH + I++GTHAL QD + + L Sbjct: 319 HYEELNRLFKDLPVRIALLTGRTTGKERELILQKAAHREVDILVGTHALIQDDVIFSDLA 378 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 LV+ DEQHRFGV+QR L K H L +TATPIPRT+ L+ GD+D+S + E P GRK Sbjct: 379 LVVTDEQHRFGVRQRAALRNKGKDVHTLFLTATPIPRTMALSVYGDLDVSTMRELPPGRK 438 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE-HFT 515 P+KT + + ++ ++ G + Y +CP +EE ++ ++ + SL F Sbjct: 439 PVKTYAVTEGMRSRIYAFMRKEIAAGHQCYVVCPLVEESASADLQAATALYESLKSTDFA 498 Query: 516 S-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 S ++HGRMS +K+ VM+ F+ G KLL+AT+VIEVG++V +A+I+ ++ AE FGLA Sbjct: 499 DISCGLVHGRMSGKEKDEVMERFQRGDIKLLVATSVIEVGVNVPNATIMCVDGAERFGLA 558 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQRKEGE 632 QLHQLRGRVGRG + CILL S N T RL ++ DGF ++E+DL R G+ Sbjct: 559 QLHQLRGRVGRGAAQAYCILLAK---SGNEETRQRLKWMETIHDGFSLSEKDLLLRGAGQ 615 Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 + G Q G+P A+ LL AR A+ L Sbjct: 616 LFGSMQHGLPDLKAARIIEDADLLIPARDGAQAYL 650 >gi|322390145|ref|ZP_08063679.1| DNA helicase RecG [Streptococcus parasanguinis ATCC 903] gi|321143176|gb|EFX38620.1| DNA helicase RecG [Streptococcus parasanguinis ATCC 903] Length = 671 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 241/678 (35%), Positives = 381/678 (56%), Gaps = 44/678 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PLS GVG K + K+ ET DLL Y P + D R + E+ + Sbjct: 3 LHQPLSVLPGVGPKSAEKFKKL-----GIET-LEDLLLYFPFRYEDFKTR-NVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYR-----KTEMLKNVFFEGR 121 I+G ++ ++ Q KR + + G I + FF + K E+ + V G+ Sbjct: 56 KAVISGLVATPANVQYYGYKRNRLRFSIKQGDQVIAVNFFNQPYLADKIEVQQTVAIFGK 115 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVE 177 G + +K + +D ++ VY + G+S V L K + Sbjct: 116 WDKAKGSLTGMK----------LLAQVEDD----LQPVYRVTQGVSQNSLVKLIKIAFDQ 161 Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237 L +L L E + + L ++ S ++A +H P KD A R+ ++ELL Q Sbjct: 162 GLDQL--LEENVPQILRERYQLMSRSQAVQAMHFP---KDLAEYKQALRRVKFEELLFFQ 216 Query: 238 IALLLMRKQ-FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 + L +++++ GI + + + + + +PF T++QE+++ +IL DM+ M R Sbjct: 217 LQLQVLKEENHDASQGISLAWDPEKLAERKKQLPFELTQAQENSLNEILTDMASPYHMNR 276 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 +LQGDVGSGKT+VA +AM AA+ AG QA +M P ILA+QH E ++ + + + ++T Sbjct: 277 LLQGDVGSGKTVVAGLAMYAALSAGKQAALMVPTEILAEQHKESLQNLFPD--LPIALLT 334 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G + A +R+ LE IA G A +I+GTHAL Q+ + Y L LVI+DEQHRFGV QR L + Sbjct: 335 GGLKAAEKREVLEEIASGTAQLIVGTHALIQEGVHYQDLGLVIIDEQHRFGVSQRRILRE 394 Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 K P VL+MTATPIPRTL +T+ GD+D+S I + PAGRK I T + +++ V++ L Sbjct: 395 KGQNPDVLMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKEIITRWVKHEQLEVVLDWLV 454 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVM 534 L +G +AY+I P IEE + + ++ + L F + ++++HG+M +K+++M Sbjct: 455 KELGKGSQAYFISPLIEESEALDLKNALALQEELEAFFGQRARVSLLHGKMKSEEKDAIM 514 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 +FK +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S IL Sbjct: 515 QAFKEHQVDVLVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGNKQSYAIL 574 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 + +P + + R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A Sbjct: 575 VANPK-TDSGKQRMKIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADLVEDYP 633 Query: 655 LLEIARKDAKHILTQDPD 672 +LE RK A I+ PD Sbjct: 634 ILEEGRKVASQIVA-TPD 650 >gi|307690625|ref|ZP_07633071.1| ATP-dependent DNA helicase RecG [Clostridium cellulovorans 743B] Length = 681 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 245/675 (36%), Positives = 375/675 (55%), Gaps = 34/675 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 +++ + +GVG K L+K G N +DLL Y P + + I+ I+ + Sbjct: 3 IYSDIKNLKGVGPKALQLLNK---SGIYN---LLDLLLYFPREYENITSSEDITNINGKE 56 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 + I + + + K + GE T + +K +F ++ T+ G+ Sbjct: 57 KLKIKCKVLRIFPDKRTKTGKTITTIAFSDGENTFYGKWFNQPYVKKKYFIDKEYTLIGE 116 Query: 129 IKKLKNRIIMVHP-HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--- 184 +KK+ + +P + ++ + I Y L GL+ + F K+I L + + Sbjct: 117 VKKVGKDYEISNPKDFKEKEDKEKSDKNIIPKYPLKAGLTNNFFIKLITSILEAMFIREN 176 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LPEWI ++K S+ A IH P++ A RL + EL + +L+++ Sbjct: 177 LPEWI----IEKYKLCSLDYAIRNIHYPKEENALR---AAERRLKFQELFTYSLKILMLK 229 Query: 245 KQFKKEIGIPINVEG---KIAQKI--LRN-IPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 + K N EG KIA ++ L+N +PF T +Q A+++IL DM + M R+L Sbjct: 230 EYVKS------NKEGIAFKIAPELVDLKNSLPFQLTDAQSKAVREILSDMKKPTPMNRLL 283 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY-EFIKKYTQNTQIIVEIITG 357 QGDVGSGKT+VALIA+ A + Q V+MAP ILA QHY EFI+ I +E++TG Sbjct: 284 QGDVGSGKTIVALIALFNAAKNQYQGVLMAPTEILANQHYHEFIR-IMAPFNIKIELLTG 342 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 + + + + E I G+ I+IGTHAL +D +Q+ L +++ DEQHRFGV QR KL K Sbjct: 343 STTKKQKERIKEEIKGGKIDILIGTHALIEDDVQFENLGIIVTDEQHRFGVMQRNKLFNK 402 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 VL+MTATPIPRTL L GD+++S I + P GR+ I+T + D + E K Sbjct: 403 GKNIDVLVMTATPIPRTLALYLYGDLEVSIIDQLPPGREKIETKHGTKKQRDNIYEFSKK 462 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMD 535 + EG++ Y +CP +E+ + + +SV F L E + ++ IHG+MS DK+ VM+ Sbjct: 463 SIKEGRQVYVVCPLVEDNEVLDLKSVEALFIELKESYFKDYNVGFIHGKMSPKDKDKVMN 522 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 FKN ++L+ATTVIEVGI+V +A+I+IIENAE FGLAQLHQLRGRVGRG+ S C L+ Sbjct: 523 EFKNKETQILVATTVIEVGINVPNANIMIIENAERFGLAQLHQLRGRVGRGQYKSYCFLI 582 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 SK + R+ +++ + DGF IAEEDLK R GE+ G++QSG L++ ++ Sbjct: 583 ADTK-SKVTEKRMKIMEQSNDGFFIAEEDLKIRGTGEVFGLRQSGENGLLLSDVIEDINI 641 Query: 656 LEIARKDAKHILTQD 670 L+ A K+AK ++ + Sbjct: 642 LKCANKEAKELVASE 656 >gi|332828323|gb|EGK01032.1| ATP-dependent DNA helicase RecG [Dysgonomonas gadei ATCC BAA-286] Length = 707 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 237/669 (35%), Positives = 372/669 (55%), Gaps = 27/669 (4%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG K + L+K +N + DLL+Y P +IDR I EI + + G I Sbjct: 23 GVGPKKAEILNKELNVFSVE-----DLLYYFPYKYIDRSRIYFIHEIDGNMPYIQLRGRI 77 Query: 77 SQHSSFQLQKRRPYKILLN---DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133 + F+ R K L+ DGTG I L++F + ++ + V GK Sbjct: 78 T---GFETHGERHKKRLVGHFTDGTGYIDLVWF-QGARFIEEKYKLNLPYIVFGKPTMFG 133 Query: 134 NRIIMVHPH---YIFHNSQDVNF-PLIEAVYSLPTG-LSVDLFKKIIVEALSRL-PVLPE 187 ++ + HP YI + P + L+ +K++ A + + L E Sbjct: 134 DKFNIAHPDIDPYINEEERPTGLMPYYNTTEKMKNHYLNSKAIQKMMAAAFTSIIRNLQE 193 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247 + + ++Q + +A +H P A A+ RL ++EL Q+ +L Sbjct: 194 TLPEKVIQNARLMDLKQAMRNVHFPENAT---LLREAQYRLKFEELFYIQLNILRYTADR 250 Query: 248 KKEIG--IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 K ++ + V G + +N+PF T +Q+ IK+I QDM+ +M R+LQGDVGSG Sbjct: 251 KSKLKGFVFTKVGGYLNTFYEQNLPFPLTNAQKRIIKEIRQDMATGEQMNRLLQGDVGSG 310 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KTLVAL+ M A++ G QA +MAP ILA QHY IK++ + VE++TG+ + R Sbjct: 311 KTLVALMLMLIALDNGFQAALMAPTEILATQHYYTIKEFLAGMDVNVELLTGSTKKKDRE 370 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAPHVL 424 + + I+IGTHAL +D++Q+ L LV++DEQHRFGV QR KL T+ PH+L Sbjct: 371 RIHSGLLTNDVQILIGTHALIEDTVQFGNLGLVVIDEQHRFGVAQRAKLWTKNTNPPHIL 430 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 +MTATPIPRTL +T GD+D+S I E P GRKPI+T+ + + ++ L EG++ Sbjct: 431 VMTATPIPRTLAMTVYGDLDVSVIDELPPGRKPIQTIHQYDKKRGALYNSIRKQLQEGRQ 490 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y + P IEE ++ + +++ E F + E F ++ +HG+M +K++ M F + Sbjct: 491 VYMVYPLIEESEKLDLKNLEEGFEHIKEIFPEYTVCKVHGKMKPKEKDAEMQRFVTNEAQ 550 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +++ATTVIEVG++V +AS+++IE+A+ FGL+QLHQLRGRVGRG + S CIL+ LS + Sbjct: 551 IMVATTVIEVGVNVPNASVMVIESAQRFGLSQLHQLRGRVGRGADQSYCILVTPYELSAD 610 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKD 662 + R++++ + DGF IAE DLK R G++ G +QSG+P IA +++ AR+ Sbjct: 611 TRKRINIMVESNDGFEIAEADLKLRGPGDLEGTQQSGIPFNLRIANLVRDGEIVQYAREI 670 Query: 663 AKHILTQDP 671 A+++L +DP Sbjct: 671 AQNVLDEDP 679 >gi|303258026|ref|ZP_07344035.1| ATP-dependent DNA helicase RecG [Burkholderiales bacterium 1_1_47] gi|330999442|ref|ZP_08323156.1| ATP-dependent DNA helicase RecG [Parasutterella excrementihominis YIT 11859] gi|302859369|gb|EFL82451.1| ATP-dependent DNA helicase RecG [Burkholderiales bacterium 1_1_47] gi|329574868|gb|EGG56427.1| ATP-dependent DNA helicase RecG [Parasutterella excrementihominis YIT 11859] Length = 685 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 235/680 (34%), Positives = 366/680 (53%), Gaps = 32/680 (4%) Query: 10 FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69 A +S R G+K + ++ G ++ F+ + P + D I E+ Sbjct: 1 MAEISWKRKPGQKLAPLAERLKKLGLVSDWDFV---LHLPLRYEDETSITPIEELEVGVD 57 Query: 70 VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G ++ +S + ++ ++D T + + F + ++++ G+++ + G Sbjct: 58 AQVEGVVTNNSDNRFGN---FEAWVDDETDMLKVRFIHYYPS-IRDLLKVGKRVRLYGNP 113 Query: 130 KK-LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188 + + M+HP S+ + VY G++ +K I AL + + Sbjct: 114 RAAFGGGLEMIHPKVRAPKSESDLPKTLSPVYPAGEGVTQLWLRKRIDRALMDVDI---- 169 Query: 189 IEKDLLQKKS-----FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIA 239 DLL ++ P ++EA N +H+P+ T PA +RL +DELLA QI+ Sbjct: 170 --SDLLTEEERNELHLPGLSEAINSLHHPKAGAPIGPLQNRTDPAWQRLKFDELLAQQIS 227 Query: 240 LLLMRKQFKKEIG--IPI--NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 L R+ G +P+ + K ++PF TK+Q KDI + + + M Sbjct: 228 LKKSREMRDMNKGPLMPLRKGDNNSLTAKFFHSLPFKLTKAQIRVWKDIYESLGSERPMN 287 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +A A++AG QA +MAP ILA+QH++ I + + + V + Sbjct: 288 RLVQGDVGSGKTVVAALAACQAIDAGYQAALMAPTEILAEQHFKKIISWLEPFGVRVVWL 347 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL--K 413 +G +R+AL I G A +++GTHA+ Q +++ L L IVDEQHRFGV QRL + Sbjct: 348 SGKQKAKEKREALAAIEDG-AELVVGTHAIIQPDVKFKALGLAIVDEQHRFGVDQRLAIR 406 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 Q PH+L+++ATPIPRTL ++ L DID+S I E P GR+ I T ++ ++R +++E Sbjct: 407 AQQNGMMPHLLMLSATPIPRTLAMSYLADIDVSVIDELPPGRQEISTKLVSMSRKGDLVE 466 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532 + L+ G +AYW+CP IEE ++ + + E + + I ++HG+M+ DK + Sbjct: 467 WIGKSLAAGLQAYWVCPLIEESEKVDLTAATETCEEIKQILPQFKIELLHGKMTPEDKNA 526 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 VMD F G KLL++TTVIEVG+DV +ASI++IE+AE FGLAQLHQLRGRVGRG S C Sbjct: 527 VMDRFVKGETKLLVSTTVIEVGVDVPNASIMVIEHAERFGLAQLHQLRGRVGRGSIKSYC 586 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 ++ LSK RL V +T DGF I+ DL+ R GE LG +QSG A E Sbjct: 587 FAIFGDQLSKIGKERLQVFNDTTDGFEISRRDLELRGPGEFLGARQSGAALLRFADFETD 646 Query: 653 DSLLEIARKDA-KHILTQDP 671 L+E A A K I +DP Sbjct: 647 GFLVEKAMAMADKWIREKDP 666 >gi|160881019|ref|YP_001559987.1| ATP-dependent DNA helicase RecG [Clostridium phytofermentans ISDg] gi|160429685|gb|ABX43248.1| ATP-dependent DNA helicase RecG [Clostridium phytofermentans ISDg] Length = 678 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 230/657 (35%), Positives = 363/657 (55%), Gaps = 21/657 (3%) Query: 27 LSKIINCGNANETRFIDLLFYHPSSFIDRHYR-------PK-ISEISEERIVTITGYISQ 78 L KI G E +F L + + I+ + R PK IS E + I I+ Sbjct: 7 LGKIKGIGEKTELKFHKLSLFSVNDLIEHYPRGYEVYEMPKPISSAVEGTTIAIEAGIA- 65 Query: 79 HSSFQLQKRRPYKI---LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 S +++K R +I ++ D +G I L +F + LKN G + GK+ + Sbjct: 66 -SIAEVKKIRNLQIITCMVRDPSGTIKLTWFNQP--FLKNTLRMGARFIFRGKVTRKNGS 122 Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQ 195 +++ P + +++ +Y+L GL+ K + LS++ E++ K +++ Sbjct: 123 LVIGQPKIYKQEEYRILLNVMQPIYALTEGLTNHTVSKAVNTVLSQIDDFKEFLPKTIIK 182 Query: 196 KKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI 255 +++ S A IH P KA+D AR RL +DE + L +R+ + + Sbjct: 183 EQNLISRKAAIREIHFP-KARD--TMLEARRRLVFDEFFIYTVILQRIRENKGSILNGFV 239 Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315 E + +++ +P+ T +Q+ +++ +D+ M R++QGDVGSGKT++A++A+ Sbjct: 240 IKEQQEVSELIAGLPYELTNAQKKVWEEVKKDLLCNTSMNRLIQGDVGSGKTILAVLALL 299 Query: 316 AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375 + G Q M P +LA+QH E ++ + +E++ G+M + +RKA +RI + + Sbjct: 300 LVAKNGYQGCFMVPTEVLAKQHLEALQSSLTRFGVKIELLVGSMTASMKRKAYQRIENHE 359 Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435 II+GTHAL Q+ + Y KL LVI DEQHRFGV+QR L K PHVL+M+ATPIPRTL Sbjct: 360 VDIIVGTHALIQEKVIYDKLALVITDEQHRFGVKQRESLLNKGDNPHVLVMSATPIPRTL 419 Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495 + GD+DIS + E PA R PIK ++ + + +SEG++AY ICP +EE Sbjct: 420 AIILYGDLDISVVDELPANRLPIKNCVVDSTYRETAYRFIGKQISEGRQAYVICPMVEES 479 Query: 496 KESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + +VVE L E S I +HG+M DK+ +M F +G K+L++TTV+EV Sbjct: 480 ETMEAENVVEYTEKLKEALPSINGIEYLHGKMKPKDKDDIMGRFASGEIKVLVSTTVVEV 539 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 G++V ++++++IENAE FGLAQLHQLRGRVGRG S CIL+ SK + RL +L Sbjct: 540 GVNVPNSTVMMIENAERFGLAQLHQLRGRVGRGAHQSYCILVSGSS-SKETMERLEILNK 598 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670 + DGF IA EDLK R G++ GI+QSG +F I S+L+ A + AK++ ++ Sbjct: 599 SNDGFFIASEDLKLRGPGDLFGIRQSGDLEFKIGDIYQDASVLKAANEAAKNLTAEE 655 >gi|323343283|ref|ZP_08083510.1| DNA helicase RecG [Prevotella oralis ATCC 33269] gi|323095102|gb|EFZ37676.1| DNA helicase RecG [Prevotella oralis ATCC 33269] Length = 700 Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 237/682 (34%), Positives = 382/682 (56%), Gaps = 25/682 (3%) Query: 5 FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64 LN L + +GVG K L+K ++ + DLL Y+P ++DR +I+++ Sbjct: 1 MLNILDQDIQYLQGVGPKRQAILNKELDIRT-----WRDLLEYYPYKYVDRSKVYRIADL 55 Query: 65 SEER-IVTITGYISQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRK 122 + + V I G I + + R+ + +DGTG L++F + KN + G + Sbjct: 56 TGDMPFVQIKGRILSFEEYAVSARKKRIVAHFSDGTGVCDLVWFQGTQYVYKN-YKVGEE 114 Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLP-----TGL---SVDLFKKI 174 V GK R HP ++ ++ Y GL ++ K Sbjct: 115 YIVFGKPGIYNGRYRFAHPDIDRAAEVQLSSMGMQPYYMTTEKMKKAGLQSRGIEKLTKT 174 Query: 175 IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234 +VE L++ LPE + + S EA IH P K+ + A+ RL ++EL Sbjct: 175 LVEKLTQ-DALPETLPPFITGPHHLVSRFEALRGIHYP---KNLDEMQRAQVRLKFEELF 230 Query: 235 AGQIALL-LMRKQFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKN 292 Q+ +L + +K G G N +PF+ T +Q+ + +I DM Sbjct: 231 YVQLNILRYANDRRRKYRGYVFGRVGMQFNDFFHNHLPFALTNAQKRVMHEIRADMGSGR 290 Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352 +M R+LQGDVGSGKT VAL++M A++ G QA IMAP ILA+QH ++ + I V Sbjct: 291 QMNRLLQGDVGSGKTFVALMSMLIAIDNGFQACIMAPTEILAEQHLATLRAFLGAMSIRV 350 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 E++TG + RR L+ +A G+ I++GTHA+ ++++Q+ +L L +VDEQHRFGV+QR Sbjct: 351 ELLTGIVKGKKRRHILDALAAGEVDILVGTHAIIEENVQFARLGLAVVDEQHRFGVEQRA 410 Query: 413 KLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471 KL K+ PH+L+MTATPIPRTL +T GD+D+S I E P GRKPI+T+ ++ + Sbjct: 411 KLWAKSKNPPHILVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTIHKLDTQMTSL 470 Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530 + ++ + +G++ Y + P I+E ++ + +++ + F +L E F + ++ +HG+M +K Sbjct: 471 YQGIRQQIEQGRQVYIVFPLIKESEKIDLKNLEDGFETLKEAFPNYRMSKVHGQMKPAEK 530 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 E+ M F NG ++L++TTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S Sbjct: 531 ETEMQRFVNGETQILVSTTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQS 590 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQP 649 CIL+ L++ + R+ ++ T DGF I+E DLK R G++ G +QSG+ L IA Sbjct: 591 YCILVTTYKLTEETQKRIDIMCETNDGFRISEADLKLRGPGDLEGTQQSGVAFDLKIANI 650 Query: 650 ELHDSLLEIARKDAKHILTQDP 671 L+++AR +A+ I+ DP Sbjct: 651 ARDGQLIQLARDEAQKIIDNDP 672 >gi|28199580|ref|NP_779894.1| ATP-dependent DNA helicase [Xylella fastidiosa Temecula1] gi|182682315|ref|YP_001830475.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa M23] gi|28057695|gb|AAO29543.1| ATP-dependent DNA helicase [Xylella fastidiosa Temecula1] gi|182632425|gb|ACB93201.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa M23] gi|307578592|gb|ADN62561.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa subsp. fastidiosa GB514] Length = 718 Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 236/658 (35%), Positives = 365/658 (55%), Gaps = 43/658 (6%) Query: 52 FIDRHYRPKISEISEERIVTITGYI-SQHSSFQLQKRRPY-KILLNDGTGEI-TLLFFYR 108 + DR I+E+ + V I + + SF + RP +++L+D I T+ FF+ Sbjct: 52 YEDRTRLTPIAELQDGVAVQIEARVEAVERSF---RYRPLLRVVLSDDAHHILTMRFFHF 108 Query: 109 KTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGL 166 + + F G ++ G K + +VHP Y I + V+ ++ VY + G+ Sbjct: 109 RAAQIAR-FTVGTRVRAYGVPKLGQYGWEIVHPSYRILAPGEAVSLNDCLDPVYPVIDGV 167 Query: 167 SVDLFKKIIVEALSRLP------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE- 219 + +++I EAL LP +LP+ DL P++ A I+H P D Sbjct: 168 GPAIVRQLIREALEHLPTDAALELLPDVWLSDL----GLPTLRTALLIMHRPPLDADIAR 223 Query: 220 ---WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276 T PA++RL+ +ELL+ Q++L R ++ + + +L +PF T + Sbjct: 224 LMVGTHPAQQRLSLEELLSHQLSLRRQRIALQRHSAPALPDGAALVASLLHALPFHLTAA 283 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q+ I D+++ MLR++QGDVGSGKT+VA +A AVE Q + AP +LA+Q Sbjct: 284 QQRVFAQIAADVAKPVPMLRLVQGDVGSGKTVVAALAALLAVEQNKQVALAAPTALLAEQ 343 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 H+ ++ + + + V + + R +AL +A G A +++GTHAL Q+S+ ++ L Sbjct: 344 HFINLRDWLEPLGVRVYWLAAKVTGKARLQALNDVASGDAQVVVGTHALMQESVVFHDLA 403 Query: 397 LVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452 L IVDEQHRFGV QRL L K PH L+MTATPIPRTL + + D+D+S I E P Sbjct: 404 LTIVDEQHRFGVHQRLLLRDKGATDGIVPHQLVMTATPIPRTLAMAAYADLDVSVIDEMP 463 Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--------ESN---FR 501 GR P++T ++ R E++ER+++ ++G++ YW+C I+E + SN R Sbjct: 464 PGRTPVQTNVLSAERRPELVERIRLACAQGRQVYWVCTLIDESQTEAEQAPPSSNDIGHR 523 Query: 502 SVVERFNSLHEHFTSS-----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556 S V+ + +E ++ + ++HGRM +K+ M +FK +L+ATTVIEVG+D Sbjct: 524 SEVQAAQATYEALSAQLPGVRVGLVHGRMKAAEKQRTMRAFKCNEIDVLVATTVIEVGVD 583 Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616 V +AS++IIENAE GLAQLHQLRGRVGRG +SSC+LLY PPLS + RL +++ T D Sbjct: 584 VPNASLMIIENAERLGLAQLHQLRGRVGRGSVVSSCVLLYQPPLSMLARQRLQIMRQTND 643 Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 GF IAE+DL+ R GE+LG +Q+G+ F +A LL A +L + P L Sbjct: 644 GFAIAEKDLELRGPGELLGTRQTGLAAFRVADLARDAHLLPRVYSLANMLLDESPQLA 701 >gi|29349332|ref|NP_812835.1| ATP-dependent DNA helicase RecG [Bacteroides thetaiotaomicron VPI-5482] gi|29341240|gb|AAO79029.1| ATP-dependent DNA helicase recG [Bacteroides thetaiotaomicron VPI-5482] Length = 698 Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 237/670 (35%), Positives = 362/670 (54%), Gaps = 21/670 (3%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + + L+K + DL++Y P ++DR I EI + + G I Sbjct: 14 GVGPQKAAVLNKELEI-----YSLYDLIYYFPYKYVDRSRIYYIHEIDGNMPYIQLKGEI 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 + ++R +DGTG + L++F +L I + GK RI Sbjct: 69 LGFETIGEGRQRRLTAHFSDGTGIVDLVWFQGIKYILGKYKLHEEYI-IFGKPTVFNGRI 127 Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190 + HP + ++ ++ Y+ + +E + + LPE + Sbjct: 128 NVAHPDIDKPDDLKLSSVGLQPYYNTTEKMKRSFLNSHAIEKMMATVIQQIQEPLPETLS 187 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 +L + EA IH P A+ RL ++EL Q+ +L K ++ Sbjct: 188 PKILSDHHLMPLTEALRNIHFPTNPDSLR---RAQYRLKFEELFYVQLNILCYAKDRQRR 244 Query: 251 I-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 G G + +N+PF T +Q+ +K+I D+ +M R+LQGDVGSGKTL Sbjct: 245 YRGYIFERVGDVFNTFYSQNLPFQLTGAQKRVLKEIRNDVGSGRQMNRLLQGDVGSGKTL 304 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VAL++M A++ G QA +MAP ILA QHYE IK+ I VE++TG++ R L Sbjct: 305 VALMSMLLALDNGFQACMMAPTEILANQHYETIKELLFGMDIRVELLTGSIKGKKREAIL 364 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAPHVLLMT 427 + G I+IGTHA+ +D++ + L LV++DEQHRFGV QR +L T+ PHVL+MT Sbjct: 365 TGLLTGDVKILIGTHAVIEDTVNFSSLGLVVIDEQHRFGVAQRARLWTKNIQPPHVLVMT 424 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T GD+D+S I E P GRKPI T+ NR + + ++ + EG++ Y Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPITTIHQFDNRRESMYRAVRKQIEEGRQVYI 484 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 + P I+E ++ + +++ E + + E F ++A +HG+M +K+ M F +G ++++ Sbjct: 485 VYPLIKESEKIDLKNLEEGYQHILEEFPGCTVAKVHGKMKSAEKDEQMQLFISGQAQIMV 544 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CIL+ + L++++ Sbjct: 545 ATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCILVTNYKLTEDTRK 604 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKH 665 RL ++ T DGF IAE DLK R G++ G +QSG+ L IA LL+ R A+ Sbjct: 605 RLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIANLARDGQLLQYVRSIAED 664 Query: 666 ILTQDPDLTS 675 I+ DP S Sbjct: 665 IVDNDPSAQS 674 >gi|310779483|ref|YP_003967816.1| ATP-dependent DNA helicase RecG [Ilyobacter polytropus DSM 2926] gi|309748806|gb|ADO83468.1| ATP-dependent DNA helicase RecG [Ilyobacter polytropus DSM 2926] Length = 684 Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 235/643 (36%), Positives = 370/643 (57%), Gaps = 25/643 (3%) Query: 9 LFAPLSTF--RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 +F PL F +G+ K + K+ N G DL +Y P ++ DR I+++ E Sbjct: 7 VFEPLGNFELKGITDKS---IEKLKNLGIVT---LYDLFYYFPRNYEDRTNFKSINQLKE 60 Query: 67 ERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 I G + + + + R+ K ++DGTG + L++F + LK G + Sbjct: 61 GEYAVIKGKLFGIETLRTRTRKTMIKAKVSDGTGFVELVWF--QMPYLKKSLKMGDEYIF 118 Query: 126 TGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLP 183 G +K+ N M +P Y + S+ V+ ++ +YS + +KI+ AL S Sbjct: 119 IGNVKRGYN-YQMTNPEYRKYAESKGVSKEIL-PIYSSNKDFNQRSLRKIVKTALDSYTE 176 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 + E I +++L+K S +A IH P+ +D E A+ R A +ELL + +L Sbjct: 177 LFQENIPEEILKKYSIADRKKALKDIHFPKNTRDIE---EAKRRFAIEELLILETGILEK 233 Query: 244 R---KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 R E+ + + + +K L N+ +S TK+Q+ + +I ++++ + R+LQG Sbjct: 234 RFAIDSMNNEMYV-LEDNKNLVKKFLGNLGYSLTKAQKRVVTEIYKELNNGKIINRLLQG 292 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA+I + +E Q V MAP ILA QHY I I VE++TG++ Sbjct: 293 DVGSGKTIVAVIMLLYMIENSYQGVFMAPTEILATQHYLSIADTLLELGIRVELLTGSVK 352 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 + LE I +G+ +I+GTH+L +D+++++KL L+++DEQHRFGV QR KL +K Sbjct: 353 GRKKDAILEDIKNGKIDLIVGTHSLIEDNVEFHKLGLIVIDEQHRFGVIQRKKLREKGVI 412 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII-PINRIDEVIERLKVVL 479 ++++M+ATPIPR+L L+ GD+D+S I E P GR P+KT I + ++ ++ L Sbjct: 413 ANLIVMSATPIPRSLALSIYGDLDVSIIDEMPPGRTPVKTKWINSSSDAEKAYSFIQKKL 472 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA-IIHGRMSDIDKESVMDSFK 538 +EG++AY++ P IEE ++ +F+SV E F + F A ++HGRM + +K+ +M FK Sbjct: 473 TEGRQAYFVAPLIEESEKLSFKSVQELFKEVTRRFPQCRAGLLHGRMKNSEKDEIMHFFK 532 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 N +L+ATTVIEVGI+V +ASI++I N E FGL+ LHQLRGRVGRG S C L+ Sbjct: 533 NHKLDILVATTVIEVGINVPNASIMVINNTERFGLSALHQLRGRVGRGIHPSYC-FLFSE 591 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641 + S +RL ++++T DGF IAEEDL+ RK GEI GI+QSG Sbjct: 592 TDNDVSKSRLMIMESTTDGFKIAEEDLRLRKPGEIFGIRQSGF 634 >gi|71276566|ref|ZP_00652840.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa Dixon] gi|71900210|ref|ZP_00682349.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa Ann-1] gi|71162637|gb|EAO12365.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa Dixon] gi|71730043|gb|EAO32135.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa Ann-1] Length = 718 Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 237/658 (36%), Positives = 364/658 (55%), Gaps = 43/658 (6%) Query: 52 FIDRHYRPKISEISEERIVTITGYI-SQHSSFQLQKRRPY-KILLNDGTGEI-TLLFFYR 108 + DR I+E+ + V I + + SF + RP +++L+D I T+ FF+ Sbjct: 52 YEDRTRLTPIAELQDGVAVQIEARVEAVERSF---RYRPLLRVVLSDDAHHILTMRFFHF 108 Query: 109 KTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGL 166 + + F G ++ G K + +VHP Y I + V+ ++ VY + G+ Sbjct: 109 RAAQIAR-FTVGTRVRAYGVPKLGQYGWEIVHPSYRILAPGEAVSLNDCLDPVYPVIDGV 167 Query: 167 SVDLFKKIIVEALSRLP------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE- 219 + +++I EAL LP +LP+ DL P++ A I+H P D Sbjct: 168 GPAIVRQLIREALEHLPTDAVLELLPDVWLSDL----GLPTLRTALLIMHRPPLDADIAR 223 Query: 220 ---WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276 T PA++RL+ +ELLA Q++L R ++ + + +L +PF T + Sbjct: 224 LMVGTHPAQQRLSLEELLAHQLSLRRQRIALQRHSAPALPDGAALVASLLHALPFHLTAA 283 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q+ I D+++ MLR++QGDVGSGKT+VA +A AVE Q + AP +LA+Q Sbjct: 284 QQRVFAQIAADVAKPVPMLRLVQGDVGSGKTVVAALAALLAVEQNKQVALAAPTALLAEQ 343 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 H ++ + + + V + + R +AL +A G A +++GTHAL Q+S+ ++ L Sbjct: 344 HLINLRDWLEPLGVRVHWLAAKVTGKARLQALNDVASGDAQVVVGTHALMQESVVFHDLA 403 Query: 397 LVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452 L IVDEQHRFGV QRL L K PH L+MTATPIPRTL + + D+D+S I E P Sbjct: 404 LTIVDEQHRFGVHQRLLLRDKGAIAGIVPHQLVMTATPIPRTLAMAAYADLDVSVIDEMP 463 Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--------ESNF---R 501 GR P++T ++ R E++ER+++ ++G++ YW+C I+E + SN R Sbjct: 464 PGRTPVQTNVLSAERRPELVERIRLACAQGRQVYWVCTLIDESQTEAEHAPHSSNDIGPR 523 Query: 502 SVVERFNSLHEHFTSS-----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556 S V+ + +E ++ + ++HGRM +K+ M +FK +L+ATTVIEVG+D Sbjct: 524 SEVQAAQATYEALSAQLPGVRVGLVHGRMKAAEKQRTMRAFKCNEIDVLVATTVIEVGVD 583 Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616 V +AS++IIENAE GLAQLHQLRGRVGRG +SSC+LLY PPLS + RL +++ T D Sbjct: 584 VPNASLMIIENAERLGLAQLHQLRGRVGRGSVVSSCVLLYQPPLSMLARQRLQIMRQTND 643 Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 GF IAE+DL+ R GE+LG +Q+G+ F +A LL A +L + P L Sbjct: 644 GFAIAEKDLELRGPGELLGTRQTGLAAFRVADLARDAHLLPRVYSLANMLLDESPQLA 701 >gi|170756283|ref|YP_001782038.1| ATP-dependent DNA helicase RecG [Clostridium botulinum B1 str. Okra] gi|169121495|gb|ACA45331.1| ATP-dependent DNA helicase RecG [Clostridium botulinum B1 str. Okra] Length = 679 Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 247/681 (36%), Positives = 388/681 (56%), Gaps = 44/681 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSS--FIDRHYRPKISEISE 66 +++P++T +GVG K L K C N +DLL Y P FID + + K+ +S+ Sbjct: 3 VYSPITTLKGVGPKTKEQLEK---CMIFN---IMDLLLYFPRDYEFIDNYSKDKL--LSK 54 Query: 67 ERIVTITGYISQHSSFQLQKR-RPYKIL----LNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + I+ + Q + + R R KIL NDG I +F + +KN F G Sbjct: 55 KVIIKV-----QVENIKRDIRTRTGKILTTIIFNDGEKAIVGSWFNQP--YIKNYFKIGE 107 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 + + G +K+ + + + + I N +++V I Y L L +L K++ L Sbjct: 108 EYVLQGSLKEYRGNLTINNAQ-ILKNKCAEEVEERKIIPKYPLKGDLKNNLLIKLVDSVL 166 Query: 180 SRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 + + + LP W L++K F S+ ++ IH P K+ E + RL + ELLA Sbjct: 167 TNIDIGENLPIW----LIEKYKFLSLDKSIRTIHKPENQKELE---ESIRRLKFQELLAY 219 Query: 237 QIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 + + +++ + GI V +I ++ +PF T +Q +++I +D ++ M Sbjct: 220 CLKIAFLKEYLETATEGISFIVSEEI-NNLIEVLPFKLTNAQNKVLQEIFKDQEKEKPMN 278 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R+LQGDVGSGKT++ALI++ ++ G Q V++AP ILA QHYE K ++ + +E++ Sbjct: 279 RLLQGDVGSGKTIIALISLFNVIKNGYQGVMLAPTEILAVQHYEEALKLFKDFNLNIELL 338 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 G++ + +++ E++ G+ +IIGTHAL +D +++Y L +VI DEQHRFGV QR K+ Sbjct: 339 IGSIKVSSKKEIKEKLKEGKIDLIIGTHALIEDDVEFYNLGMVITDEQHRFGVMQRSKML 398 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 K + L+M+ATPIPR+L L+ GD+D+S I E P GR+ I T + + V Sbjct: 399 NKGKSVDTLVMSATPIPRSLTLSLYGDLDLSIIDELPPGRQKIDTYYVNDSYRKRVYNFA 458 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-SIAIIHGRMSDIDKESV 533 ++ G++ Y +CP +EEK+E N SV + +N L E+F IAI+HG+M +K+++ Sbjct: 459 LKEINNGRQVYIVCPLVEEKEELNLNSVEKLYNDLKGEYFKEVEIAILHGKMKGKEKDTI 518 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M FK G K LI+TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG+ S CI Sbjct: 519 MKDFKEGKIKALISTTVIEVGVNVPNATLMVIENAERFGLAQLHQLRGRVGRGKHKSYCI 578 Query: 594 LLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 L+ KN R+ ++K++ DGFL+AEEDLK R GEI G KQ G L+A Sbjct: 579 LIAR---VKNDIIRKRMEIMKSSNDGFLVAEEDLKLRGGGEIFGFKQHGSSNLLLADVIE 635 Query: 652 HDSLLEIARKDAKHILTQDPD 672 LL IA ++K I+ + + Sbjct: 636 DIHLLRIANMESKKIIDSNNE 656 >gi|317404929|gb|EFV85296.1| ATP-dependent DNA helicase [Achromobacter xylosoxidans C54] Length = 696 Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 243/672 (36%), Positives = 359/672 (53%), Gaps = 28/672 (4%) Query: 17 RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76 +G GK + K+ N G F+ + P + D IS++ + G I Sbjct: 16 KGAGKAMTDTERKLRNLGLVLPEDFV---LHLPLRYEDETRVIPISQLRPGFAGQVEGEI 72 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITL--LFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134 ++ S + RR L D +GE+ L L FY + V G+++ G+++ Sbjct: 73 TK-SEVLYRPRRQLTATLADDSGELQLRWLNFYPSQQKQVTV---GKRLRARGEVRGGLF 128 Query: 135 RIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193 MVHP + D P + VY GL ++ I +AL R L + + Sbjct: 129 GREMVHPRL---TNADAPLPTALTPVYPSTEGLPQLTLRRAIAQALDRAD-LSDTLPPQA 184 Query: 194 LQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQ--F 247 L + P A A +H P + + + PA R+ +DELLA Q++L R Sbjct: 185 LARYDLPPFAPAIRALHTPAQGESEAALLDRVHPAWRRIKFDELLAQQLSLAAARAARRV 244 Query: 248 KKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 K+ +P+ E G + ++ + +PF T +Q+ + +I D+++ M R+LQGDVGSGK Sbjct: 245 KEAEVLPVRDEPGGLVDRLYQALPFKLTGAQQRVVAEISADLARPYPMHRLLQGDVGSGK 304 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366 T+VA IA A A+ G Q +MAP ILA+QH+ + + Q + V ++G++ RR+ Sbjct: 305 TVVAAIAAAQAIAGGAQVALMAPTEILAEQHFRKLVSWLQPLGVNVAWLSGSLTAKARRE 364 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------ 420 A A G +++GT AL QD +++ +L L IVDEQHRFGV QRL LT+K Sbjct: 365 AAAAAADGSVQLVVGTQALIQDHVEFQRLGLSIVDEQHRFGVGQRLALTRKGETVRGRIV 424 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 PH L M+ATPIPRTL +T D+D+S I E P GR P+ T ++ R +EVI + Sbjct: 425 PHQLNMSATPIPRTLAMTFFADLDVSVIDELPPGRTPVLTKLVSDARREEVIAHIAQAAR 484 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539 G++AYW+CP +EE + ++ V+ + + I ++HGR+ +K +VM +F+ Sbjct: 485 GGQQAYWVCPLVEESEALELQTAVDTYEGMRVDLPDLRIGLVHGRLPQAEKAAVMQAFRE 544 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+LLY P Sbjct: 545 GEIDLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCVLLYQTP 604 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 LS+ + RL + T DGF IA DL+QR GE LG +QSGM A E + E A Sbjct: 605 LSQVARERLRAMFETSDGFEIARRDLEQRGPGEFLGTRQSGMALLRFADLETDAEIAEQA 664 Query: 660 RKDAKHILTQDP 671 R A + + P Sbjct: 665 RDAAVWLRAEHP 676 >gi|291543374|emb|CBL16483.1| ATP-dependent DNA helicase RecG [Ruminococcus sp. 18P13] Length = 680 Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 243/700 (34%), Positives = 378/700 (54%), Gaps = 40/700 (5%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID-RHYRPKISEI 64 +N LF P+S RGVG+K + +++ +T + DLLF+ P S++D R+ P +S Sbjct: 1 MNELFRPISALRGVGEKRAKAYARL-----GIQTPY-DLLFHIPRSYLDFRNPEPVLSAP 54 Query: 65 SEERIVTITGYISQHSSFQLQKR--RPYKILLNDGTGEITLLFFYRKTEMLKNVFFE--- 119 + V + G I++ Q ++ +K DG + T++F+ N F+ Sbjct: 55 LDTPCV-VEGCITRKLPEQRIRKGLSVFKATATDGESDFTVVFY--------NNFYAFDA 105 Query: 120 ---GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKII 175 G GK+ R + P Y+ + P L++ VY L GL+ + + + Sbjct: 106 LKVGETYRFAGKLTGTLLRREIHSPQYL-----RADCPVLMKPVYPLTNGLTNPMVQANM 160 Query: 176 VEALSRLPVLP-EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234 +AL L P + + + ++ ++ EA ++H P + A+ RLA+D LL Sbjct: 161 RQALELLRREPFDGLPSGIRRQYDLCTLPEALGVVHQPASEPILQE---AKRRLAFDALL 217 Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 Q+ +L++R + + + ++ + + ++PF+PT +Q+ +I +I D+ + Sbjct: 218 QLQLGMLMLRNRSRAQTAYTMDPDTDLT-PFYASLPFAPTNAQKRSIAEICGDLCRTVPA 276 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R+LQGDVGSGKT VA A + G Q+ +MAP ILA QHY ++ + I V + Sbjct: 277 NRLLQGDVGSGKTAVAAAACYFTCKNGFQSALMAPTEILATQHYHTLEGFLSPLGIRVGL 336 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 +TG++P +R+ + G+ +++GTHAL Q + L LVI DEQHRFGV QR L Sbjct: 337 LTGSLPAKEKRRIRTALQAGELDVLVGTHALIQKDTVFPALGLVITDEQHRFGVGQRAAL 396 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 QK PH L+M+ATPIPRTL L GD+DIS + E P GR PI+T + Sbjct: 397 AQKGGTPHKLVMSATPIPRTLALIVYGDLDISVLDELPVGRLPIRTYAVTGKLRQRAYGF 456 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKES 532 ++ + G++AY +CP IEE ES+ +V L ++ + ++HG+M +KE Sbjct: 457 VRSRMDAGEQAYIVCPMIEE-GESDLLAVTSYAEQLRAGAFAAYRVGLLHGKMKPAEKEQ 515 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 VM SFK G LL+ TTV+EVG+DV +A++++IEN+E FGL+QLHQLRGRVGRG + S C Sbjct: 516 VMASFKAGELDLLVCTTVVEVGVDVPNATVMLIENSERFGLSQLHQLRGRVGRGSKQSHC 575 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 IL+ S+ S RL VL +T DGF IAEEDLK R G+ G Q G+P +A+ Sbjct: 576 ILITD-STSEESRERLRVLSSTTDGFRIAEEDLKLRGPGDFFGSAQHGLPPVHLAELAED 634 Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRI-LLYLYQYN 691 L+ ++ A+ IL DP L ++R ++ LY N Sbjct: 635 MELVRQTQQAARDILEADPQLRDPVNHALRADVVRLYARN 674 >gi|255011369|ref|ZP_05283495.1| ATP-dependent DNA helicase RecG [Bacteroides fragilis 3_1_12] gi|313149184|ref|ZP_07811377.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12] gi|313137951|gb|EFR55311.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12] Length = 698 Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 236/668 (35%), Positives = 366/668 (54%), Gaps = 25/668 (3%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + + L+K + + + DLL+Y P ++DR I EI + + G I Sbjct: 14 GVGPQKAAVLNKELEIYSLH-----DLLYYFPYKYVDRSRIYYIHEIDGNMPYIQLKGKI 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 +F ++R +DGTG + L++F + + + + + + GK RI Sbjct: 69 LGFETFGEGRQRRLLAHFSDGTGVVDLVWF-QGIKYVTGKYKLHEEYIIFGKPTVFNGRI 127 Query: 137 IMVHPHYIFHNSQDVNFPL--IEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEW 188 + HP N D+ ++ Y+ + +E + + LPE Sbjct: 128 NVAHPD--IDNPADLKLSSMGLQPYYNTTEKMKRSFLNSHAIEKMMATIIGQIQEPLPET 185 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248 + L+ + EA IH P E A+ RL ++EL Q+ +L K + Sbjct: 186 LSPKLIADHHLMPLTEALRNIHFPSNP---ELLRKAQYRLKFEELFYVQLNILRYAKDRQ 242 Query: 249 KEI-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 ++ G G+I +N+PF T +Q+ +++I QD+ +M R+LQGDVGSGK Sbjct: 243 RKYRGYVFETVGEIFNTFYSKNLPFELTGAQKRVLREIRQDVGCGKQMNRLLQGDVGSGK 302 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366 TLVAL++M A++ G QA +MAP ILA QHY+ IK+ + VE++TG++ R Sbjct: 303 TLVALMSMLIALDNGFQACMMAPTEILANQHYDTIKELLFGMDVRVELLTGSVKGKKREA 362 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLL 425 L + G HI+IGTHA+ +D++ + L L ++DEQHRFGV QR +L K+ PHVL+ Sbjct: 363 ILAGLLTGDVHILIGTHAVIEDTVNFASLGLAVIDEQHRFGVAQRARLWSKSIQPPHVLV 422 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T GD+D+S I E P GRKPI T+ NR + + ++ + EG++ Sbjct: 423 MTATPIPRTLAMTLYGDLDVSVIDELPPGRKPISTIHQFDNRRESLYRSVRKQIEEGRQI 482 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544 Y + P I+E ++ + +++ E + + E F + +HG+M +K++ M F +G ++ Sbjct: 483 YIVYPLIKESEKIDLKNLEEGYLHICEEFPDCKVCKVHGKMKPAEKDAQMQLFISGEAQI 542 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 ++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S CIL+ L++ + Sbjct: 543 MVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCILVTTYKLTEET 602 Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDA 663 RL ++ T DGF IAE DLK R G++ G +QSG+ L IA LL+ R A Sbjct: 603 RKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLLQYVRNIA 662 Query: 664 KHILTQDP 671 + I DP Sbjct: 663 EEITDADP 670 >gi|296875899|ref|ZP_06899960.1| DNA helicase RecG [Streptococcus parasanguinis ATCC 15912] gi|296433140|gb|EFH18926.1| DNA helicase RecG [Streptococcus parasanguinis ATCC 15912] Length = 671 Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 242/678 (35%), Positives = 380/678 (56%), Gaps = 44/678 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PLS GVG K + K+ ET DLL Y P + D R + E+ + Sbjct: 3 LHQPLSVLPGVGPKSAEKFKKL-----GIET-LEDLLLYFPFRYEDFKTR-NVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYR-----KTEMLKNVFFEGR 121 I+G ++ ++ Q KR + + G I + FF + K E+ + V G+ Sbjct: 56 KAVISGVVATPANVQYYGYKRNRLRFSIKQGDQVIAVNFFNQPYLADKIEVQQTVAIFGK 115 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVE 177 G + +K + +D ++ VY + G+S V L K + Sbjct: 116 WDKAKGSLTGMK----------LLAQVEDD----LQPVYRVTQGVSQNSLVKLIKIAFDQ 161 Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237 L +L L E + + L + S ++A +H P KD A R+ ++ELL Q Sbjct: 162 GLDQL--LEENVPQILRDRYQLMSRSQAVQAMHFP---KDLAEYKQALRRVKFEELLFFQ 216 Query: 238 IALLLMRKQ-FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 + L +++++ GI + + + + + +PF T++QE+++ +IL DM+ M R Sbjct: 217 LQLQVLKEENHDASQGISLACDPEKLAERKKQLPFELTQAQENSLNEILTDMASPYHMNR 276 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 +LQGDVGSGKT+VA +AM AA+ AG QA +M P ILA+QH E ++ + + + ++T Sbjct: 277 LLQGDVGSGKTVVAGLAMYAALSAGKQAALMVPTEILAEQHKESLQNLFPD--LPIALLT 334 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G + A +R+ LE IA G +I+GTHAL Q+ + Y L LVI+DEQHRFGV QR L + Sbjct: 335 GGLKVAEKREVLEEIASGTVQLIVGTHALIQEGVHYQDLGLVIIDEQHRFGVSQRRILRE 394 Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 K P VL+MTATPIPRTL +T+ GD+D+S I + PAGRK I T + +++ V++ L Sbjct: 395 KGQNPDVLMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKEIITRWVKHEQLEVVLDWLV 454 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVM 534 L +G +AY+I P IEE + + ++ + L F + I+++HG+M +K+++M Sbjct: 455 KELGKGSQAYFISPLIEESEALDLKNALALQEELEAFFGQRARISLLHGKMKSEEKDAIM 514 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 +FK +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S IL Sbjct: 515 QAFKEHQVDVLVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGNKQSYAIL 574 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 + +P + + R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A Sbjct: 575 VANPK-TDSGKQRMKIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADLVEDYP 633 Query: 655 LLEIARKDAKHILTQDPD 672 +LE ARK A I+ PD Sbjct: 634 ILEEARKVASQIVA-TPD 650 >gi|237719141|ref|ZP_04549622.1| ATP-dependent DNA helicase recG [Bacteroides sp. 2_2_4] gi|229451520|gb|EEO57311.1| ATP-dependent DNA helicase recG [Bacteroides sp. 2_2_4] Length = 698 Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 242/681 (35%), Positives = 367/681 (53%), Gaps = 43/681 (6%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + + L+K + + + DL++Y P +IDR I EI + + G I Sbjct: 14 GVGPQKAAVLNKELEIYSLH-----DLIYYFPYKYIDRSRIYYIHEIDGNMPYIQLKGEI 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 + ++R +DGTG + L++F +L I + GK RI Sbjct: 69 LGFETIGEGRQRRLTAHFSDGTGVVDLVWFQGIKYILGKYKLHEEYI-IFGKPTVFNGRI 127 Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190 + HP ++ ++ Y+ + +E + + LPE + Sbjct: 128 NVAHPDVDKPEDLKLSSVGLQPYYNTTEKMKRSFLNSHAIEKMMATVIQQIQEPLPETLS 187 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSP-----ARERLAYDELLAGQIALLLMRK 245 LL + + EA IH P T+P A+ RL ++EL Q+ +L K Sbjct: 188 SKLLAEHHLMPLTEALRNIHFP--------TNPDVLRRAQYRLKFEELFYVQLNILRYAK 239 Query: 246 QFKKEIGIPINVEGKIAQKI--------LRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 +K G I +K+ +N+PF T +Q+ +K+I D+ +M R+ Sbjct: 240 DRQKR------YRGYIFEKVGDVFNTFYTKNLPFQLTGAQKRVLKEIRNDVGSGRQMNRL 293 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 LQGDVGSGKTLVAL++M A++ G QA +MAP ILA QHYE IK+ I VE++TG Sbjct: 294 LQGDVGSGKTLVALMSMLLALDNGYQACMMAPTEILANQHYETIKELLFGMDIRVELLTG 353 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 ++ R L + G I+IGTHA+ +D++ + L V++DEQHRFGV QR +L K Sbjct: 354 SIKGKRREAILTGLLTGDVKILIGTHAVIEDTVNFSSLGFVVIDEQHRFGVAQRARLWSK 413 Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PHVL+MTATPIPRTL +T GD+D+S I E P GRKPI T+ NR + + ++ Sbjct: 414 NVQPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPITTIHQFDNRRESMYRSVR 473 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMD 535 + EG++ Y + P I+E ++ + +++ E + + E F ++ +HG+M +K+ M Sbjct: 474 KQIEEGRQVYIVYPLIKESEKIDLKNLEEGYQHVLEEFPKCTVCKVHGKMKPAEKDEQMQ 533 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F +G ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CIL+ Sbjct: 534 LFVSGKAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCILV 593 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDS 654 + L++++ RL ++ T DGF IAE DLK R G++ G +QSG+ L IA Sbjct: 594 TNYKLTEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIVRDGQ 653 Query: 655 LLEIARKDAKHILTQDPDLTS 675 LL+ R A+ I+ QDP S Sbjct: 654 LLQYVRAIAESIVEQDPAAQS 674 >gi|254751166|ref|ZP_05203205.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. Vollum] Length = 564 Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 203/517 (39%), Positives = 321/517 (62%), Gaps = 18/517 (3%) Query: 156 IEAVYSLPTGLSVDLFKKIIVEAL-----SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIH 210 +E VYS+ L+V ++ I +AL S + VLP+ + L + K P EA +H Sbjct: 23 VEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEVLPDGL---LSRYKLLPRY-EALRALH 78 Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNI 269 P +D + AR R Y+E Q+ + +RK + + G + + Q+ + + Sbjct: 79 FPTGQEDLKQ---ARRRFVYEEFFLFQLKMQTLRKMERENSKGTKKEIPSEELQEFIDAL 135 Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T +Q + +I++DM+ RM R+LQGDVGSGKT+VA I + AA A Q +M P Sbjct: 136 PFPLTGAQRRVVDEIMKDMTSPYRMNRLLQGDVGSGKTVVAAIGLYAAKLAHYQGALMVP 195 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILA+QHY+ + + + + VE++T ++ RR+ L ++ G+ I++GTHAL QD Sbjct: 196 TEILAEQHYQSLAETFSHFGMKVELLTSSVKGVRRREILAKLEQGEIDILVGTHALIQDE 255 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + +++L LVI DEQHRFGV QR L +K +P VL MTATPIPRTL +T+ G++D+S I Sbjct: 256 VIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMTATPIPRTLAITAFGEMDVSIID 315 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 E PAGRK I+T + +D V+ ++ +++G++AY ICP IEE ++ + ++ ++ + Sbjct: 316 EMPAGRKVIETYWAKHDMLDRVLGFVEKEINKGRQAYVICPLIEESEKLDVQNAIDLHSM 375 Query: 510 LHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 L H+ + ++HGR+S +KE +M F ++L++TTV+EVG++V +A++++I + Sbjct: 376 LTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYD 435 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627 AE FGL+QLHQLRGRVGRG E S C+L+ P S+ R+ ++ T DGF+++E+DL+ Sbjct: 436 AERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGKERMRIMTETNDGFVLSEKDLEL 494 Query: 628 RKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDA 663 R G+ G KQSG+P+F +A +HD LE AR+DA Sbjct: 495 RGPGDFFGSKQSGLPEFKVADM-VHDYRALETARQDA 530 >gi|53715245|ref|YP_101237.1| ATP-dependent DNA helicase RecG [Bacteroides fragilis YCH46] gi|52218110|dbj|BAD50703.1| ATP-dependent DNA helicase RecG [Bacteroides fragilis YCH46] Length = 698 Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 234/666 (35%), Positives = 366/666 (54%), Gaps = 21/666 (3%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + + L+K + + + DLL+Y P ++DR I EI + + G I Sbjct: 14 GVGPQKAAVLNKELEIYSLH-----DLLYYFPYKYVDRSRIYYIHEIDGNMPYIQLKGKI 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 +F ++R +DGTG + L++F + + + N + + V GK RI Sbjct: 69 LGFETFGEGRQRRLLAHFSDGTGVVDLVWF-QGIKYVTNKYKLHEEYIVFGKPTVFNGRI 127 Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190 + HP ++ ++ Y+ + +E + + L E + Sbjct: 128 NVAHPDIDSPADLKLSSMGLQPYYNTTEKMKRSFLNSHAIEKMMATVIGQIQEPLSETLS 187 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 L+ S+ +A IH P E A+ RL ++EL Q+ +L K +++ Sbjct: 188 PKLIADHHLMSLTDALRNIHFPSNP---ELLRKAQYRLKFEELFYVQLNILRYAKDRQRK 244 Query: 251 I-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 G G+I +N+PF T +Q+ +++I QD+ +M R+LQGDVGSGKTL Sbjct: 245 YRGYVFETVGEIFNTFYSKNLPFELTGAQKRVLREIRQDVGCGKQMNRLLQGDVGSGKTL 304 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VAL++M A++ G QA +MAP ILA QHY+ I++ + VE++TG++ R L Sbjct: 305 VALMSMLMALDNGFQACMMAPTEILANQHYDTIRELLFGMDVRVELLTGSVKGKKREAIL 364 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLLMT 427 + G HI+IGTHA+ +D++ + L L ++DEQHRFGV QR +L K+ PHVL+MT Sbjct: 365 TGLLTGDVHILIGTHAVIEDTVNFASLGLAVIDEQHRFGVAQRARLWSKSVQPPHVLVMT 424 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T GD+D+S I E P GRKPI T+ NR + + ++ + EG++ Y Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATIHQFDNRRESLYRSVRKQIEEGRQVYI 484 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 + P I+E ++ + +++ E + + E F + +HG+M +K++ M F +G ++++ Sbjct: 485 VYPLIKESEKIDLKNLEEGYLHICEEFPDCKVCKVHGKMKPAEKDAQMQLFISGDAQIMV 544 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S CIL+ L++ + Sbjct: 545 ATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCILVTTYKLTEETRK 604 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKH 665 RL ++ T DGF IAE DLK R G++ G +QSG+ L IA LL+ R A+ Sbjct: 605 RLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLLQYVRTIAEE 664 Query: 666 ILTQDP 671 I DP Sbjct: 665 ITDADP 670 >gi|312868533|ref|ZP_07728733.1| ATP-dependent DNA helicase RecG [Streptococcus parasanguinis F0405] gi|311096278|gb|EFQ54522.1| ATP-dependent DNA helicase RecG [Streptococcus parasanguinis F0405] Length = 671 Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 242/678 (35%), Positives = 381/678 (56%), Gaps = 44/678 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PLS GVG K + K+ ET DLL Y P + D R + E+ + Sbjct: 3 LHQPLSVLPGVGPKSAEKFKKL-----GIET-LEDLLLYFPFRYEDFKTR-NVLELEDGE 55 Query: 69 IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYR-----KTEMLKNVFFEGR 121 I+G ++ ++ Q KR + + G I + FF + K E+ + V G+ Sbjct: 56 KAVISGVVATPANVQYYGYKRNRLRFSIKQGDQVIAVNFFNQPYLADKIEVQQTVAIFGK 115 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVE 177 G + +K + +D ++ VY + G+S V L K + Sbjct: 116 WDKAKGSLTGMK----------LLAQVEDD----LQPVYRVTQGVSQNSLVKLIKIAFDQ 161 Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237 L +L L E + L + S ++A +H P KD A R+ ++ELL Q Sbjct: 162 GLDQL--LEENVPHILRDRYQLMSRSQAVQAMHFP---KDLAEYKQALRRVKFEELLFFQ 216 Query: 238 IALLLMRKQ-FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 + L +++++ GI + + + + + +PF T++QE+++ +IL DM+ M R Sbjct: 217 LQLQVLKEENHDASQGISLAWDPEKLAERKKQLPFELTQAQENSLNEILTDMASPYHMNR 276 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 +LQGDVGSGKT+VA +AM AA+ AG QA +M P ILA+QH E ++ + + + ++T Sbjct: 277 LLQGDVGSGKTVVAGLAMYAALSAGKQAALMVPTEILAEQHKESLQNLFPD--LPIALLT 334 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G + A +R+ LE IA G+A +I+GTHAL Q+ + Y L LVI+DEQHRFGV QR L + Sbjct: 335 GGLKAAEKREVLEEIASGKAQLIVGTHALIQEGVHYQDLGLVIIDEQHRFGVSQRRILRE 394 Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 K P VL+MTATPIPRTL +T+ GD+D+S I + PAGRK I T + +++ V++ L Sbjct: 395 KGQNPDVLMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKEIITRWVKHEQLEVVLDWLV 454 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVM 534 L +G +AY+I P IEE + + ++ + L F + ++++HG+M +K+++M Sbjct: 455 KELGKGSQAYFISPLIEESEALDLKNALALQEELETFFGQRARVSLLHGKMKSEEKDAIM 514 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 +FK +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S IL Sbjct: 515 QAFKEHQVDVLVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGNKQSYAIL 574 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 + +P + + R+ ++ T +GF++AEEDLK R GEI G +QSG+P+F +A Sbjct: 575 VANPK-TDSGKQRMKIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADLVEDYP 633 Query: 655 LLEIARKDAKHILTQDPD 672 +LE ARK A I+ PD Sbjct: 634 ILEEARKVASKIVAT-PD 650 >gi|163856603|ref|YP_001630901.1| ATP-dependent DNA helicase RecG [Bordetella petrii DSM 12804] gi|163260331|emb|CAP42633.1| ATP-dependent DNA helicase [Bordetella petrii] Length = 696 Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 229/601 (38%), Positives = 338/601 (56%), Gaps = 22/601 (3%) Query: 87 RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK-LKNRIIMVHPHYIF 145 RR ++ D +GE+ L + K + GR++ G+++ L R I VHP Sbjct: 82 RRQLTAVMADDSGELQLRWLNFYPSQQKQLAI-GRRLRARGEVRGGLFGREI-VHPRM-- 137 Query: 146 HNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAE 204 +S + P + VY GL +K I +AL + L + + L++ A Sbjct: 138 -SSAETPLPDALTPVYPSTDGLPQPSLRKAIGQALQQA-NLDDTLPPAALERYDLMPFAP 195 Query: 205 AFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK 260 A ++H P E PA R+ +DELLA Q++L R + P+ +G Sbjct: 196 AIRLLHAPPPGVSEHDLIERGHPAWRRIKFDELLAQQLSLAAARAARRSIRAEPLPAQGG 255 Query: 261 IAQKILR---NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317 + R +PF T +Q+ +++I D+++ M R+LQGDVGSGKT+VA IA A A Sbjct: 256 AGGLVARLYAALPFQLTGAQQRVVQEIAADLAKPYPMHRLLQGDVGSGKTVVAAIAAAQA 315 Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377 + G Q +MAP ILA+QH+ + + Q + V ++G++ RR+A A G Sbjct: 316 IACGAQVALMAPTEILAEQHFRKLVSWLQPLGVNVAWLSGSLTAKARRQAAASAADGSVQ 375 Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA------TAPHVLLMTATPI 431 +++GT AL QD +++++L L IVDEQHRFGV QRL LT+K T PH L M+ATPI Sbjct: 376 LVVGTQALIQDHVEFHRLGLSIVDEQHRFGVGQRLALTRKGEAPQGHTVPHQLNMSATPI 435 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491 PRTL +T D+D+S I E P GR P+ T ++ R DEVI + + EG++AYW+CP Sbjct: 436 PRTLAMTFFADLDVSVIDELPPGRTPVVTKLVSDGRRDEVIAHIAHAVREGRQAYWVCPL 495 Query: 492 IEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550 +EE + ++ V+ + ++ + ++HGR+ DK +VM +F++G LL+ATTV Sbjct: 496 VEESEALQLQTAVDTYETMQAELPDLRLGLVHGRLPQTDKAAVMQAFRDGDIDLLVATTV 555 Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610 IEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+LLY PLS+ + RL Sbjct: 556 IEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAESVCVLLYQTPLSQVARQRLRA 615 Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670 + T DGF IA DL+QR GE LG +QSG+ A E + E AR+ A + + Sbjct: 616 MFETSDGFEIARRDLEQRGPGEFLGTRQSGVTLLRFADLESDVGIAEQAREAAAWLRNEY 675 Query: 671 P 671 P Sbjct: 676 P 676 >gi|168182572|ref|ZP_02617236.1| ATP-dependent DNA helicase RecG [Clostridium botulinum Bf] gi|237795934|ref|YP_002863486.1| ATP-dependent DNA helicase RecG [Clostridium botulinum Ba4 str. 657] gi|182674174|gb|EDT86135.1| ATP-dependent DNA helicase RecG [Clostridium botulinum Bf] gi|229262431|gb|ACQ53464.1| ATP-dependent DNA helicase RecG [Clostridium botulinum Ba4 str. 657] Length = 679 Score = 367 bits (942), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 245/681 (35%), Positives = 387/681 (56%), Gaps = 44/681 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSS--FIDRHYRPKISEISE 66 +++P++T +GVG K L K C N +DLL Y P FID + + K+ +S+ Sbjct: 3 VYSPITTLKGVGPKTKEQLEK---CMIFN---IMDLLLYFPRDYEFIDNYSKDKL--LSK 54 Query: 67 ERIVTITGYISQHSSFQLQKR-RPYKIL----LNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + I+ + Q + + R R KIL NDG I +F + +KN F G Sbjct: 55 KVIIKV-----QVENIKRDIRTRTGKILTTIIFNDGEKAIVGSWFNQP--YIKNYFKIGE 107 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 + + G +K+ + + + + I N +++V I Y L L +L K++ L Sbjct: 108 EYVLQGSLKEYRGNLTINNAQ-ILKNKCAEEVEERKIIPKYPLKGDLKNNLLIKLVDSVL 166 Query: 180 SRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 + + + LP W L++K F S+ ++ IH P K+ E + RL + ELLA Sbjct: 167 TNIDIGENLPIW----LIEKYKFLSLDKSIRTIHKPENQKELE---ESIRRLKFQELLAY 219 Query: 237 QIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 + + +++ + GI V +I ++ +PF T +Q +++I +D ++ M Sbjct: 220 CLKIAFLKEYLETATEGISFIVSEEI-NNLIEVLPFKLTNAQNKVLQEIFKDQEKEKPMN 278 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R+LQGDVGSGKT++ALI++ ++ G Q V++AP ILA QHYE K ++ + +E++ Sbjct: 279 RLLQGDVGSGKTIIALISLFNVIKNGYQGVMLAPTEILAVQHYEEALKLFKDFNLNIELL 338 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 G++ + +++ E++ G+ +IIGTHAL +D +++Y L +VI DEQHRFGV QR K+ Sbjct: 339 IGSIKVSSKKEIKEKLKEGKIDLIIGTHALIEDDVEFYNLGMVITDEQHRFGVMQRSKML 398 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 K + L+M+ATPIPR+L L+ GD+D+S I E P GR+ I T + + V Sbjct: 399 NKGKSVDTLVMSATPIPRSLTLSLYGDLDLSIIDELPPGRQKIDTYYVNDSYRKRVYNFA 458 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESV 533 ++ G++ Y +CP +EEK+E + SV + +N L E + IAI+HG+M +K+++ Sbjct: 459 LKEINNGRQVYIVCPLVEEKEELDLNSVEKLYNDLKEEYFKEVEIAILHGKMKGKEKDTI 518 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M FK G K LI+TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG+ S CI Sbjct: 519 MKDFKEGKIKALISTTVIEVGVNVPNATLMVIENAERFGLAQLHQLRGRVGRGKHKSYCI 578 Query: 594 LLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 L+ KN R+ ++K++ DGFL+AEEDLK R GEI G KQ G L+A Sbjct: 579 LIAK---VKNDIIRKRMEIMKSSNDGFLVAEEDLKLRGGGEIFGFKQHGSSNLLLADVIE 635 Query: 652 HDSLLEIARKDAKHILTQDPD 672 LL IA ++K I+ + + Sbjct: 636 DIHLLRIANMESKKIIDSNNE 656 >gi|226313294|ref|YP_002773188.1| ATP-dependent DNA helicase RecG [Brevibacillus brevis NBRC 100599] gi|226096242|dbj|BAH44684.1| ATP-dependent DNA helicase [Brevibacillus brevis NBRC 100599] Length = 684 Score = 367 bits (942), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 231/664 (34%), Positives = 382/664 (57%), Gaps = 17/664 (2%) Query: 11 APLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69 +P+S GVG++ + F IN DLL Y PS + D R ++E+ + Sbjct: 7 SPVSLLHGVGEERAKAFAGLGINS-------IGDLLEYFPSRYEDYRVR-DLTEVKDGER 58 Query: 70 VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 VT+ G + S + +R ++ + + + + +K+ G++I VTGK Sbjct: 59 VTLAGTVYGEPSVRFYGKRKSRLSVKVVMDRVVVTAVWFNQTFVKSRLSPGKEILVTGKW 118 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188 K K +I + + + + + VY L ++ L +K I AL + +PE Sbjct: 119 DKHKLQITVSEMTEV-DSERATKRGELAPVYPLGGDVTHTLLRKTIQLALRQYGKEIPEI 177 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248 + D++++ AF+ IH P A+D AR R+ ++EL Q+ + +RK + Sbjct: 178 LPADIVERYRLMPRIHAFHSIHFPENAED---GRQARRRIMFEELFLFQLKMQTLRKINR 234 Query: 249 KEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 ++ G+ + + + ++ ++ +PF T +Q+ +K+IL DM + M R+LQGDVGSGKT Sbjct: 235 QQTEGVALAIPMEEVREFVKGLPFPLTDAQKRVVKEILDDMRAPHAMNRLLQGDVGSGKT 294 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +VA IA+ AAV+AG Q +M P ILA+QH + + K + I V +++G++ RR+ Sbjct: 295 VVAAIALIAAVKAGYQGALMVPTEILAEQHVQSLTKLLSDYGIQVALLSGSLTAKRRREV 354 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 + + G +++GTHAL Q+ + + +L LVI DEQHRFGV+QR L K +P VL MT Sbjct: 355 IGSLQMGLIDVVVGTHALIQEDVFFSRLGLVITDEQHRFGVEQRRILRNKGLSPDVLFMT 414 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T+ GD+D+S I + PAGRKPI+T ++ V+E+++ L +G++AY Sbjct: 415 ATPIPRTLAITAFGDMDVSTIDQMPAGRKPIETTWKKHDQFPAVLEQMRDELRKGRQAYV 474 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 ICP IEE ++ + ++ ++ L F + ++HGR+ +K++VM +F +L+ Sbjct: 475 ICPLIEESEKLDVQNAIDVHAQLTHIFPEFGVGLMHGRLPAKEKDAVMQAFLAAEHAVLV 534 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 +TTV+EVG++V +A+ ++I +AE FGLAQLHQLRGRVGRG E S C+L+ P S+ Sbjct: 535 STTVVEVGVNVPNATYMVIYDAERFGLAQLHQLRGRVGRGSEQSYCVLIADPK-SEIGKE 593 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666 R+ V+ T DGF +++ DL+ R G+ G KQSG+P+F +A LE+AR++ + Sbjct: 594 RMRVMCETTDGFELSQRDLELRGPGDFFGTKQSGLPEFKVADLLSDYKALEVARQETVKL 653 Query: 667 LTQD 670 + +D Sbjct: 654 VAED 657 >gi|265767075|ref|ZP_06094904.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 2_1_16] gi|263253452|gb|EEZ24928.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 2_1_16] Length = 698 Score = 367 bits (942), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 234/666 (35%), Positives = 366/666 (54%), Gaps = 21/666 (3%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + + L+K + + + DLL+Y P ++DR I EI + + G I Sbjct: 14 GVGPQKAAVLNKELEIYSLH-----DLLYYFPYKYVDRSRIYYIHEIDGNMPYIQLKGKI 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 +F ++R +DGTG + L++F + + + N + + V GK RI Sbjct: 69 LGFETFGEGRQRRLLAHFSDGTGVVDLVWF-QGIKYVTNKYKLHEEYIVFGKPTVFNGRI 127 Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190 + HP ++ ++ Y+ + +E + + L E + Sbjct: 128 NVAHPDIDSPADLKLSSMGLQPYYNTTEKMKRSFLNSHAIEKMMATVIGQIQEPLSETLS 187 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 L+ S+ +A IH P E A+ RL ++EL Q+ +L K +++ Sbjct: 188 PKLIADHHLMSLTDALRNIHFPSNP---ELLRKAQYRLKFEELFYVQLNILRYAKDRQRK 244 Query: 251 I-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 G G+I +N+PF T +Q+ +++I QD+ +M R+LQGDVGSGKTL Sbjct: 245 YRGYVFETVGEIFNTFYSKNLPFELTGAQKRVLREIRQDVGCGKQMNRLLQGDVGSGKTL 304 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VAL++M A++ G QA +MAP ILA QHY+ I++ + VE++TG++ R L Sbjct: 305 VALMSMLMALDNGFQACMMAPTEILANQHYDTIRELLFGMDVRVELLTGSVKGKKREAIL 364 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMT 427 + G HI+IGTHA+ +D++ + L L ++DEQHRFGV QR +L K+ PHVL+MT Sbjct: 365 AGLLTGDVHILIGTHAVIEDTVNFASLGLAVIDEQHRFGVAQRARLWSKSVQPPHVLVMT 424 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T GD+D+S I E P GRKPI T+ NR + + ++ + EG++ Y Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATIHQFDNRRESLYRSVRKQIEEGRQVYI 484 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 + P I+E ++ + +++ E + + E F + +HG+M +K++ M F +G ++++ Sbjct: 485 VYPLIKESEKIDLKNLEEGYLHICEEFPDCKVCKVHGKMKPAEKDAQMQLFISGDAQIMV 544 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S CIL+ L++ + Sbjct: 545 ATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCILVTTYKLTEETRK 604 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKH 665 RL ++ T DGF IAE DLK R G++ G +QSG+ L IA LL+ R A+ Sbjct: 605 RLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLLQYVRTIAEE 664 Query: 666 ILTQDP 671 I DP Sbjct: 665 ITDADP 670 >gi|298480238|ref|ZP_06998436.1| ATP-dependent DNA helicase RecG [Bacteroides sp. D22] gi|298273519|gb|EFI15082.1| ATP-dependent DNA helicase RecG [Bacteroides sp. D22] Length = 698 Score = 367 bits (942), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 241/677 (35%), Positives = 366/677 (54%), Gaps = 43/677 (6%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + + L+K + + + DL++Y P +IDR I EI + + G I Sbjct: 14 GVGPQKAAVLNKELEIYSLH-----DLIYYFPYKYIDRSRIYYIHEIDGNMPYIQLKGEI 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 + ++R +DGTG + L++F +L I + GK RI Sbjct: 69 LGFETIGEGRQRRLTAHFSDGTGVVDLVWFQGIKYILGKYKLHEEYI-IFGKPTVFNGRI 127 Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190 + HP ++ ++ Y+ + +E + + LPE + Sbjct: 128 NVAHPDVDKPEDLKLSSVGLQPYYNTTEKMKRSFLNSHAIEKMMATVIQQIQEPLPETLS 187 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSP-----ARERLAYDELLAGQIALLLMRK 245 LL + + EA IH P T+P A+ RL ++EL Q+ +L K Sbjct: 188 SKLLAEHHLMPLTEALRNIHFP--------TNPDVLRRAQYRLKFEELFYVQLNILRYAK 239 Query: 246 QFKKEIGIPINVEGKIAQKI--------LRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 +K G I +K+ +N+PF T +Q+ +K+I D+ +M R+ Sbjct: 240 DRQKR------YRGYIFEKVGDVFNTFYTKNLPFQLTGAQKRVLKEIRNDVGSGRQMNRL 293 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 LQGDVGSGKTLVAL++M A++ G QA +MAP ILA QHYE IK+ I VE++TG Sbjct: 294 LQGDVGSGKTLVALMSMLLALDNGYQACMMAPTEILANQHYETIKELLFGMDIRVELLTG 353 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 ++ R L + G I+IGTHA+ +D++ + L V++DEQHRFGV QR +L K Sbjct: 354 SIKGKRREAILTGLLTGDVKILIGTHAVIEDTVNFSSLGFVVIDEQHRFGVAQRARLWSK 413 Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PHVL+MTATPIPRTL +T GD+D+S I E P GRKPI T+ NR + + ++ Sbjct: 414 NVQPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPITTIHQFDNRRESMYRSVR 473 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMD 535 + EG++ Y + P I+E ++ + +++ E + + E F ++ +HG+M +K+ M Sbjct: 474 KQIEEGRQVYIVYPLIKESEKIDLKNLEEGYQHILEEFPKCTVCKVHGKMKPAEKDEQMQ 533 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F +G ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CIL+ Sbjct: 534 LFVSGKAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCILV 593 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDS 654 + L++++ RL ++ T DGF IAE DLK R G++ G +QSG+ L IA Sbjct: 594 TNYKLTEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIVRDGQ 653 Query: 655 LLEIARKDAKHILTQDP 671 LL+ R A+ I+ QDP Sbjct: 654 LLQYVRAIAESIVEQDP 670 >gi|253570321|ref|ZP_04847730.1| ATP-dependent DNA helicase recG [Bacteroides sp. 1_1_6] gi|298384865|ref|ZP_06994424.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 1_1_14] gi|251840702|gb|EES68784.1| ATP-dependent DNA helicase recG [Bacteroides sp. 1_1_6] gi|298262009|gb|EFI04874.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 1_1_14] Length = 698 Score = 367 bits (942), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 237/670 (35%), Positives = 362/670 (54%), Gaps = 21/670 (3%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + + L+K + DL++Y P ++DR I EI + + G I Sbjct: 14 GVGPQKAAVLNKELEI-----YSLYDLIYYFPYKYVDRSRIYYIHEIDGNMPYIQLKGEI 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 + ++R +DGTG + L++F +L I + GK RI Sbjct: 69 LGFETIGEGRQRRLTAHFSDGTGIVDLVWFQGIKYILGKYKLHEEYI-IFGKPTVFNGRI 127 Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190 + HP + ++ ++ Y+ + +E + + LPE + Sbjct: 128 NVAHPDIDKPDDLKLSSVGLQPYYNTTEKMKRSFLNSHAIEKMMATVIQQIQEPLPETLS 187 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 +L + EA IH P A+ RL ++EL Q+ +L K ++ Sbjct: 188 PKILSDHHLMPLTEALRNIHFPTNPDSLR---RAQYRLKFEELFYVQLNILRYAKDRQRR 244 Query: 251 I-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 G G + +N+PF T +Q+ +K+I D+ +M R+LQGDVGSGKTL Sbjct: 245 YRGYIFERVGDVFNTFYSQNLPFQLTGAQKRVLKEIRNDVGSGRQMNRLLQGDVGSGKTL 304 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VAL++M A++ G QA +MAP ILA QHYE IK+ I VE++TG++ R L Sbjct: 305 VALMSMLLALDNGFQACMMAPTEILANQHYETIKELLFGMDIRVELLTGSIKGKKREAIL 364 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAPHVLLMT 427 + G I+IGTHA+ +D++ + L LV++DEQHRFGV QR +L T+ PHVL+MT Sbjct: 365 TGLLTGDVKILIGTHAVIEDTVNFSSLGLVVIDEQHRFGVAQRARLWTKNIQPPHVLVMT 424 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T GD+D+S I E P GRKPI T+ NR + + ++ + EG++ Y Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPITTIHQFDNRRESMYRAVRKQIEEGRQVYI 484 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 + P I+E ++ + +++ E + + E F ++A +HG+M +K+ M F +G ++++ Sbjct: 485 VYPLIKESEKIDLKNLEEGYQHILEEFPGCTVAKVHGKMKSAEKDEQMQLFISGQAQIMV 544 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CIL+ + L++++ Sbjct: 545 ATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCILVTNYKLTEDTRK 604 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKH 665 RL ++ T DGF IAE DLK R G++ G +QSG+ L IA LL+ R A+ Sbjct: 605 RLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIANLARDGQLLQYVRSIAED 664 Query: 666 ILTQDPDLTS 675 I+ DP S Sbjct: 665 IVDNDPSAQS 674 >gi|18310713|ref|NP_562647.1| ATP-dependent DNA helicase RecG [Clostridium perfringens str. 13] gi|18145394|dbj|BAB81437.1| ATP-dependent DNA helicase [Clostridium perfringens str. 13] Length = 690 Score = 367 bits (942), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 246/678 (36%), Positives = 380/678 (56%), Gaps = 46/678 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 ++ + +GVG K L+K+ +DLL Y P R Y +IS Sbjct: 16 IYDDIGLVKGVGPKLKERLNKV------GIFTVLDLLLYFP-----RDYEFLNDDIS--- 61 Query: 69 IVTITGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEML---------KNVF 117 + G IS + K + Y I +G T+ F Y +++ K F Sbjct: 62 ---LNGDISDEKAILKCKVQSYGSSIRTRNGKTLTTINFTYNNLKVIGKWFNQPYIKRNF 118 Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK KK+ N + +++P ++ N I +Y+L GL+ + K+I E Sbjct: 119 ILGNEYNLMGKFKKVNNTLEVINP---LIPCKEANKSEILPIYTLKNGLTNKILVKLINE 175 Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237 L + ++ E + +++++K S+ +A IH P + + A RL + EL Sbjct: 176 ILKNM-IIKENLPEEIVKKYKLISLDKAIRSIHFPEGRGELQ---SAINRLKFQELFTYS 231 Query: 238 IALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 + +++M+ KKE GI + + + + ++P++ T +Q +++IL D + M R Sbjct: 232 LKIIMMKAHIKKENSGISFKM-SPLLKDLKESLPYTLTNAQSRTLREILLDQKRNIAMNR 290 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 ++QGDVGSGKTLVALI+M G Q V+MAP ILA QHY KKY + + +E++T Sbjct: 291 LVQGDVGSGKTLVALISMFNVYMNGYQTVLMAPTEILANQHYAEAKKYLEQFGVDIELLT 350 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G+ + +++ E+IA G+ ++IGTHAL QD ++ L LV+ DEQHRFGV+QR +L Sbjct: 351 GSTKEKEKKRIKEKIASGKGIMLIGTHALIQDDVELNNLGLVVTDEQHRFGVEQRSRLIN 410 Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERL 475 K VL+MTATPIPRTL L D+DIS I E P GRKPI T+++ +N R+ L Sbjct: 411 KNKRADVLVMTATPIPRTLSLYLYSDLDISIIDELPPGRKPIDTMLVDMNQRMKAYNFAL 470 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESV 533 K V +G++ Y + P IEE ++ N SV + + L I I+HG+M+ DK+ + Sbjct: 471 KEV-EKGRQFYIVSPLIEENEKLNLNSVEKIYEELKNGIFKDIRIEILHGKMAGKDKDKI 529 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 +++FKNG K +I+TTVIEVG++V +++++IIENAE FGLAQLHQLRGRVGRGE S CI Sbjct: 530 INTFKNGEIKGIISTTVIEVGVNVPNSTMMIIENAERFGLAQLHQLRGRVGRGEHKSYCI 589 Query: 594 LLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 L+ + +KN T R+ ++ + DGF IAEEDLK R GE+ G++Q G F++A Sbjct: 590 LIAN---TKNDITRRRMEIMTESSDGFYIAEEDLKLRGAGEVFGMRQHGDEGFILANVVD 646 Query: 652 HDSLLEIARKDAKHILTQ 669 ++L+ A +AK I+ Sbjct: 647 DINILKCANHEAKLIVNN 664 >gi|255690507|ref|ZP_05414182.1| ATP-dependent DNA helicase RecG [Bacteroides finegoldii DSM 17565] gi|260623959|gb|EEX46830.1| ATP-dependent DNA helicase RecG [Bacteroides finegoldii DSM 17565] Length = 698 Score = 367 bits (942), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 236/665 (35%), Positives = 361/665 (54%), Gaps = 21/665 (3%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + + L+K + + + DL++Y P ++DR I EI + + G I Sbjct: 14 GVGPQRAAILNKELGIYSLH-----DLIYYFPYKYVDRSRVYYIHEIDGNMPYIQLKGEI 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 + ++R +DGTG + L++F +L I + GK RI Sbjct: 69 LGFEAIGEGRQRRLTAHFSDGTGVVDLVWFQGIKYILGKYKLHEEYI-IFGKPTVFNGRI 127 Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190 + HP + ++ ++ Y+ + +E + + LPE + Sbjct: 128 NVAHPDIDKSDELKLSSVGLQPYYNTTEKMKRSFLNSHAIEKMMATVIQQIQEPLPETLS 187 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 LL + + EA IH P + A+ RL ++EL Q+ +L K ++ Sbjct: 188 PKLLAEHHLMPLTEALRNIHFPANP---DLLRRAQYRLKFEELFYVQLNILRYAKDRQRR 244 Query: 251 I-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 G G + +N+PF T +Q+ +K+I D+ +M R+LQGDVGSGKTL Sbjct: 245 YRGYVFEKVGDVFNTFYAKNLPFQLTGAQKRVLKEIRNDVGSGRQMNRLLQGDVGSGKTL 304 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VAL++M A++ G QA +MAP ILA QHYE IK+ I VE++TG++ R L Sbjct: 305 VALMSMLLALDNGYQACMMAPTEILANQHYETIKELLFGMDIRVELLTGSIKGKKREAIL 364 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLLMT 427 + G HI+IGTHA+ +D++ + L V++DEQHRFGV QR +L K PHVL+MT Sbjct: 365 SGLLTGDVHILIGTHAVIEDTVNFSSLGFVVIDEQHRFGVAQRARLWSKNNQPPHVLVMT 424 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T GD+D+S I E P GRKPI TV NR + + ++ + EG++ Y Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPITTVHQFDNRRESIYRSVQKQIDEGRQVYI 484 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 + P I+E ++ + +++ E + + E F + +HG+M +K+ M F +G ++++ Sbjct: 485 VYPLIKESEKIDLKNLEEGYQHILEEFPKCKVCKVHGKMKPAEKDEQMQLFVSGEAQIMV 544 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CIL+ + L++++ Sbjct: 545 ATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCILVTNYKLTEDTRK 604 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKH 665 RL ++ T DGF IAE DLK R G++ G +QSG+ L IA LL+ R A+ Sbjct: 605 RLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGVAFDLKIADIARDGQLLQYVRTIAEE 664 Query: 666 ILTQD 670 I+ D Sbjct: 665 IVEHD 669 >gi|307564986|ref|ZP_07627503.1| ATP-dependent DNA helicase RecG [Prevotella amnii CRIS 21A-A] gi|307346299|gb|EFN91619.1| ATP-dependent DNA helicase RecG [Prevotella amnii CRIS 21A-A] Length = 699 Score = 367 bits (941), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 245/674 (36%), Positives = 387/674 (57%), Gaps = 30/674 (4%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + LSK + + DLL Y+P +IDR SE+S + V + G I Sbjct: 14 GVGPRRKDILSKELGINT-----YRDLLEYYPYKYIDRTKVYLTSELSLDMPFVQLRGKI 68 Query: 77 SQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 + + KR+ + +DG G L++F + KN + G++ V GK R Sbjct: 69 LSFEEYDMGKRKKRIVAHFSDGHGVCDLVWFNGIQYIYKN-YKIGKEYIVFGKPGFYNGR 127 Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVY---------SLPTGLSVDLFKKIIVEALSRLP-VL 185 HP + +N ++ Y SL + L K +I + +S L L Sbjct: 128 FQFTHPDIDDASQLQLNDMGMQPFYVTTEKMKNASLSSRAIEKLTKTLISKLVSPLEETL 187 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 P +I L + S EAF IH P+ D T AR RL ++EL Q+ ++ Sbjct: 188 PPFIISHL----NLISRDEAFRKIHYPKTVND---TQRARMRLKFEELFYVQLNIMRYAS 240 Query: 246 QFKKEI-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 + +++ G G+ N+PF+ T +Q+ IK+I DM +M R+LQGDVG Sbjct: 241 EHRRKYRGYEFRRIGEQFNWFYHNNLPFALTNAQKRVIKEIRADMGSGRQMNRLLQGDVG 300 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKTLVA ++M ++ G QA +AP ILA+QH + I+++ + + VE++TG + Sbjct: 301 SGKTLVAFMSMLIGIDNGFQACFVAPTEILAEQHLQTIREFLHDMNLNVELLTGIVKGKR 360 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PH 422 R+ LE + +G +I++GTHA+F+D++ + KL + ++DEQHRFGV QR +L K+ PH Sbjct: 361 RKSVLEGLVNGTINILVGTHAIFEDNVHFQKLGIAVIDEQHRFGVAQRAQLWAKSKQPPH 420 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 +L+MTATPIPRTL +T GD+D+S I E P GRKPI+T+ +++ + ++ +S+G Sbjct: 421 ILVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIETIHRYDDQMTSLYHGIRQQVSKG 480 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541 ++ Y + P I+E ++S+ +++ E FN+L E F ++ IHG+M D +KE M F G Sbjct: 481 RQVYIVFPLIKESEKSDLKNLEEGFNTLLEVFPDYHLSKIHGKMKDKEKEEEMQKFVLGQ 540 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L+ATTVIEVG++V +AS++II +A+ FGL+QLHQLRGRVGRG + S C+L+ + L+ Sbjct: 541 TQILVATTVIEVGVNVPNASVMIILDAQRFGLSQLHQLRGRVGRGADQSYCVLVTNRKLT 600 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIAR 660 K + R++V+ +T DGF I+E DLK R G++ G +QSG+ L IA L+++AR Sbjct: 601 KETKKRINVICDTNDGFAISEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLVQLAR 660 Query: 661 KDAKHILTQDPDLT 674 +A+ I+ DP+ + Sbjct: 661 DEAQKIIESDPECS 674 >gi|332638230|ref|ZP_08417093.1| ATP-dependent DNA helicase RecG [Weissella cibaria KACC 11862] Length = 678 Score = 367 bits (941), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 223/648 (34%), Positives = 368/648 (56%), Gaps = 36/648 (5%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98 DLL Y+P + D + +E + VT G I+ + F +K R +++ + T Sbjct: 32 DLLGYYPMRYNDLAMKTP-AETQDGEKVTFKGVITSPPVVNRFGYKKTRTSFRLTVEHDT 90 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 ++ F+ + + KN+ G+++ V G K R M + N D +EA Sbjct: 91 ---IMVSFFNQPWVGKNLEL-GQEVAVHGTYDK--TRQGMSGIKLMSRNGDDE----MEA 140 Query: 159 VYSLPTGLSVDLFKKIIVEALS------RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 VY + K +I++AL R ++P ++ ++ + + + Sbjct: 141 VYPSSKEIKAKTIKDLIIQALGKYGELLRTDIVPAYL-------RTRYKLMNHHDTVFGM 193 Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272 D + + AR +++E Q+ L +++ + G IN + + +PF Sbjct: 194 HAPTDGQVATEARRSASFEEFFVFQMRLQVIKSMDRDNRGRSINFNNDELKAFIATLPFE 253 Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332 T +Q+ + +I++DM + M R+LQGDVGSGKT+VA +AM AA+ AG QA +MAP I Sbjct: 254 LTDAQKRVVNEIVRDMRRPIHMNRLLQGDVGSGKTVVAALAMYAAITAGMQATLMAPTEI 313 Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392 LAQQH + I + ++ VE++TG+ A RR+ LE +A+G+ I+IGTHAL Q I + Sbjct: 314 LAQQHAKTIGNFFDPDKVRVELLTGSTKTAARRQILEDVANGEVDILIGTHALIQPDIAF 373 Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452 L L ++DEQHRFGVQQR L + P +L MTATPIPRTL +T+ G++D+S I + P Sbjct: 374 RNLGLAVIDEQHRFGVQQRATLREIGMNPDILAMTATPIPRTLAITAYGEMDVSIIDQLP 433 Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512 AGRK IKT + N +++ I ++ L EG +AY + P IEE + + ++ + L E Sbjct: 434 AGRKQIKTYWLRSNEMEKTIAFIRSQLQEGAQAYVVTPLIEESETLDVQNAEAVYAELSE 493 Query: 513 HF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 +F T + ++HGR+S+ +KE VM +FK ++L++TTVIEVG+DV ++++++I +A+ Sbjct: 494 YFAPTYRVGLLHGRLSNQEKEDVMAAFKANEFQVLVSTTVIEVGVDVPNSTVMLILDADR 553 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630 FGL+QLHQLRGRVGRG S L+ P ++ R+ + T DGF++A++DL+ R Sbjct: 554 FGLSQLHQLRGRVGRGSRQSYTFLISDPK-TQYGIDRMEAMVATTDGFVLAQKDLELRGA 612 Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT-----QDPDL 673 G+ILG +QSG+P+F + P +++ +A+++A I++ +DP+L Sbjct: 613 GDILGNRQSGVPEFRVGDPIADLAMMTVAQEEAIEIVSKPDWDKDPEL 660 >gi|163845859|ref|YP_001633903.1| ATP-dependent DNA helicase RecG [Chloroflexus aurantiacus J-10-fl] gi|222523571|ref|YP_002568041.1| ATP-dependent DNA helicase RecG [Chloroflexus sp. Y-400-fl] gi|163667148|gb|ABY33514.1| ATP-dependent DNA helicase RecG [Chloroflexus aurantiacus J-10-fl] gi|222447450|gb|ACM51716.1| ATP-dependent DNA helicase RecG [Chloroflexus sp. Y-400-fl] Length = 872 Score = 367 bits (941), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 237/693 (34%), Positives = 371/693 (53%), Gaps = 75/693 (10%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLL++ P + D R ISE+ T+ G ++ + + ++ ++D TG I Sbjct: 170 DLLYHFPRRYDDVRNRRSISELQVGAEETVIGEVTDVRTIGAGPKLRVRVEVSDETGSIE 229 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY---------IFHNSQDVNF 153 +FF ++ + G+ I ++GK+ + P + + H + V Sbjct: 230 AIFFNQR--WIAQQIRVGQTIALSGKVTTFGGKRQFSSPRWERYTPDPDALLHTGRLV-- 285 Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 ++ L GL + ++ I + + + P + + + LQ + EA IH P Sbjct: 286 ----PIHPLTQGLHENQVRRFIKQVVDTMAPQVEDHLPPVRLQHARLLPLGEALAQIHFP 341 Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272 D + AR RL +DE L QI +L ++ +++E+G ++ ++ ++ R +PF Sbjct: 342 ---TDHTSLAAARRRLGFDEFLFIQIGVLQRKRLWQQEMGYAFTIDSQVHAELQRLLPFQ 398 Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332 T +Q+ AI++I D+ + + M R+LQGDVGSGKT+VA A+ AV G Q +MAP I Sbjct: 399 LTTAQQRAIEEIFSDLRRPSPMARLLQGDVGSGKTVVAAAALLQAVANGFQGALMAPTEI 458 Query: 333 LAQQHYEFIKKY---------------------------------TQNTQII-------- 351 LA+QH + +K+ Q +II Sbjct: 459 LAEQHAKNLKQLLSRVRVPRKTTSATASSAYQQADWRSLLDPEEAAQLAEIISILGMSPE 518 Query: 352 ---------VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402 V ++TG++ RR+ LE IA G+ +++GTHAL +++Q+ +L LV+VDE Sbjct: 519 EDMGGHGVRVALLTGSLGTRERRRVLEGIARGEIDLVVGTHALITETVQFAQLGLVVVDE 578 Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462 QHRFGV+QRL+L K PH+L+MTATPIPRTL +T GD+D+S + E+P GR+ I+T Sbjct: 579 QHRFGVEQRLRLKNKGYNPHMLVMTATPIPRTLTMTIYGDLDVSVLDERPPGRQEIRTKR 638 Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL-HEHFTS-SIAI 520 + +V ++ ++EG++ Y ICP +EE ++ + S E + L HE F +A+ Sbjct: 639 VGRAERAKVYRHIRKQVAEGRQVYVICPLVEESEKLDLPSAEEMYERLQHEVFPDLRVAL 698 Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580 +HG++S +K+ VM +F++ +L+AT VIEVGIDV +A+ I+IE AE FGLAQLHQ R Sbjct: 699 LHGKLSAREKDDVMRAFRDHQYDILVATAVIEVGIDVPNATTIVIEGAERFGLAQLHQFR 758 Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 GRVGRG S CIL+ ++ S RL+ L+ T DGF +AE DL+ R GE G +QSG Sbjct: 759 GRVGRGHHQSYCILISDSD-NQQSKERLAALEQTTDGFKLAEIDLQLRGPGEFFGTRQSG 817 Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 P +AQ + LL AR A IL DP+L Sbjct: 818 TPDLKMAQ-QGDTRLLAEARALADAILADDPEL 849 >gi|172057921|ref|YP_001814381.1| ATP-dependent DNA helicase RecG [Exiguobacterium sibiricum 255-15] gi|171990442|gb|ACB61364.1| ATP-dependent DNA helicase RecG [Exiguobacterium sibiricum 255-15] Length = 676 Score = 366 bits (940), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 233/667 (34%), Positives = 360/667 (53%), Gaps = 33/667 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 ++ +GVG+ + L ++ + D+L + P + D ++E E V Sbjct: 7 VTALKGVGRDLARKLEEM------DMLTIADVLEHVPFRY-DDFVTGSLTEAIHEDKVKF 59 Query: 73 TGYISQHSSFQL----QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 TG + + + + R +++L+ D +T+ F R K+ G ++TV+GK Sbjct: 60 TGQVQSEALVRYYGKGKNRLTFRLLVEDRYS-VTVTMFNRA--FYKDQLKLGEEVTVSGK 116 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEA----VYSLPTGLSVDLFKKIIVEALSRLPV 184 H + ++ ++ F IE VYSL + + F++++ A + Sbjct: 117 WDL----------HRMTISATELQFGAIEGELTPVYSLKGDMRMKTFRRVVELAFAECEA 166 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 L E I +++ + +H P +D + AR Y+E L Q+ L +R Sbjct: 167 LEERIPENIRKTYRLLDRMTMLRRLHFPTTRQDL---TTARRSYVYEECLYFQLKLQTLR 223 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 +K G+ + + + + + +PF T +Q+ +IL DM + RM R+LQGDVGS Sbjct: 224 LGKRKGQGLALPLFQQEIDQFIATLPFPLTGAQKRVTDEILADMHRPERMNRLLQGDVGS 283 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKT+VA IA+ AAV A Q +M P ILA+QH + + I V ++T ++ R Sbjct: 284 GKTVVAAIALFAAVRANKQGALMVPTEILAEQHASSLAPLLEPLGIKVGLLTSSVKGKSR 343 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424 LE + G+ +++GTHAL QD++ + L LVI DEQHRFGV+QR +L KA VL Sbjct: 344 LLLLEALRQGKIDVLVGTHALIQDTVVFKDLHLVITDEQHRFGVEQRKRLRAKAEQADVL 403 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 MTATPIPRTL ++ GD+D+S I E PAGRK I+T +ID V ++ L G + Sbjct: 404 YMTATPIPRTLAISVFGDMDVSIIDEMPAGRKEIETYWAKPEQIDRVFGFVEKELLLGHQ 463 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543 AY I P IEE + + ++ +E L E F T + ++HGR+S +K+ VM +FK + Sbjct: 464 AYVITPLIEESESLDVQNAIELHVLLTERFSTHQVGLMHGRLSSSEKDDVMQAFKENQVQ 523 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTV+EVG++V +ASII+I +AE FGLAQLHQLRGRVGRG S CIL+ P S Sbjct: 524 VLVSTTVVEVGVNVPNASIIVIYDAERFGLAQLHQLRGRVGRGATQSFCILIADPS-SDT 582 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ + T DGF +AE+DL+ R G G +QSG+P+F++ P L ++E AR DA Sbjct: 583 GKERIKTMTETNDGFKLAEKDLELRGAGNFFGTEQSGLPRFILTDPALDIQVMETARNDA 642 Query: 664 KHILTQD 670 +L D Sbjct: 643 VRLLRSD 649 >gi|295102722|emb|CBL00267.1| ATP-dependent DNA helicase RecG [Faecalibacterium prausnitzii L2-6] Length = 686 Score = 366 bits (940), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 229/645 (35%), Positives = 348/645 (53%), Gaps = 30/645 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID--RHYRPKISEISEERI 69 P+ +GVG K + K+ DLL ++P ++D + Y + E + Sbjct: 14 PVRYLKGVGPKTAERFEKL------GILTLSDLLCHYPRRYLDFSKPYSIAEAPADTECV 67 Query: 70 VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF-----YRKTEMLKNVFFEGRKIT 124 V + RR +I D + + +F +K E+ + +F+G Sbjct: 68 VKAEVFAKPGGRILPGGRRMERITAGDDVSSLEITWFNNPYAAQKLELGQEYYFQG---I 124 Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184 VTG + + + MV+P + ++Q + P EAVY GL+ K + + L + Sbjct: 125 VTGGMLRRQ----MVNPQ-VRTDAQVKSSPF-EAVYPQTEGLTSSAIAKCVRQLLPHAEL 178 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LP+ + ++L+K S A+A IH P E AR RL Y+ELL Q+ + M+ Sbjct: 179 LPDPLPPEMLKKYRLLSKADAVRAIHCPATE---EEAFAARRRLIYEELLVLQLGIGRMK 235 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 G P+ ++PFSPT +Q A+++IL DMS + M R+LQGDVGS Sbjct: 236 NHGAASTGAPMKKAD--VSPFWESLPFSPTGAQRRAVEEILTDMSGETSMNRLLQGDVGS 293 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKTLVA A+ A + AG QA ++AP ILA QH E + + + ++TG M A R Sbjct: 294 GKTLVAAAAIWACIRAGYQAALLAPTEILASQHAENLNRLLSPFGMRAALLTGGMKAAAR 353 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424 R L I +A +I+GTHA+ + +++ +L L +VDEQHRFGV+QR L +KA PH+L Sbjct: 354 RTTLAAIRDDEADLIVGTHAILSEGVEFARLGLAVVDEQHRFGVRQRGLLAEKAANPHLL 413 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 +M+ATPIPRTL L GD+DIS + E P GRKP+KT I + ++ L + G++ Sbjct: 414 VMSATPIPRTLGLLMYGDLDISILDELPPGRKPVKTRCITGKKRADLYGFLDREIDSGRQ 473 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542 Y +CP IE+ S +V + + + + + ++HG++ +K VMD FK+G Sbjct: 474 VYIVCPAIEDAGGSGLNAVKSYYEDIAKAYLPDRRVGLMHGKLKPKEKAEVMDDFKSGRL 533 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 L++TTVIEVG+DV +A++++IENAE +GL+ LHQLRGRVGRG S C L+ S+ Sbjct: 534 DALVSTTVIEVGVDVPNATVMVIENAERYGLSALHQLRGRVGRGAAESWCFLVSD-NASE 592 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 + RL L +T DGF +A+ DL+ R G+ G +Q G+P IA Sbjct: 593 SVQKRLKFLCSTSDGFAVAQYDLETRGPGDFFGSRQHGLPTLQIA 637 >gi|168214207|ref|ZP_02639832.1| ATP-dependent DNA helicase RecG [Clostridium perfringens CPE str. F4969] gi|170714286|gb|EDT26468.1| ATP-dependent DNA helicase RecG [Clostridium perfringens CPE str. F4969] Length = 690 Score = 366 bits (940), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 246/678 (36%), Positives = 380/678 (56%), Gaps = 46/678 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 ++ + +GVG K L+K+ +DLL Y P R Y +IS Sbjct: 16 IYDDIGLVKGVGPKLKERLNKV------GIFTVLDLLLYFP-----RDYEFLNDDIS--- 61 Query: 69 IVTITGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEML---------KNVF 117 + G IS + K + Y I +G T+ F Y +++ K F Sbjct: 62 ---LNGDISDEKAILKCKVQSYGSSIRTRNGKTLTTINFTYNNLKVIGKWFNQPYIKRNF 118 Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK KK+ N + +++P ++ N I +Y+L GL+ + K+I E Sbjct: 119 ILGNEYNLMGKFKKVNNTLEVINP---LIPCKEANKSEILPIYTLKNGLTNKILVKLINE 175 Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237 L + ++ E + +++++K S+ +A IH P + + A RL + EL Sbjct: 176 ILKNM-IIKENLPEEIVKKYKLISLDKAIRSIHFPEGRGELQ---SAINRLKFQELFTYS 231 Query: 238 IALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 + +++M+ KKE GI + + + + ++P++ T +Q +++IL D + M R Sbjct: 232 LKIIMMKAHIKKENSGISFKM-SPLLKDLKESLPYTLTNAQSRTLREILLDQKRNIAMNR 290 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 ++QGDVGSGKTLVALI+M G Q V+MAP ILA QHY KKY + + +E++T Sbjct: 291 LVQGDVGSGKTLVALISMFNVYMNGYQTVLMAPTEILANQHYAEAKKYLEQFGVDIELLT 350 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G+ + +++ E+IA G+ ++IGTHAL QD ++ L LV+ DEQHRFGV+QR +L Sbjct: 351 GSTKEKEKKRIKEKIASGKGIMLIGTHALIQDDVELNNLGLVVTDEQHRFGVEQRSRLIN 410 Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERL 475 K VL+MTATPIPRTL L D+DIS I E P GRKPI T+++ +N R+ L Sbjct: 411 KNKRADVLVMTATPIPRTLSLYLYSDLDISIIDELPPGRKPIDTMLVDMNQRMKAYNFAL 470 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESV 533 K V +G++ Y + P IEE ++ N SV + + L I I+HG+MS DK+ + Sbjct: 471 KEV-EKGRQFYIVSPLIEENEKLNLNSVEKIYEELKNGIFKDVRIEILHGKMSGKDKDKI 529 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 +++FKNG K +I+TTVIEVG++V +++++IIENAE FGLAQLHQLRGRVGRG+ S CI Sbjct: 530 INTFKNGEIKGIISTTVIEVGVNVPNSTMMIIENAERFGLAQLHQLRGRVGRGKHKSYCI 589 Query: 594 LLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 L+ + +KN T R+ ++ + DGF IAEEDLK R GE+ G++Q G F++A Sbjct: 590 LIAN---TKNDITRRRMEIMTESSDGFYIAEEDLKLRGAGEVFGMRQHGDEGFILANVVD 646 Query: 652 HDSLLEIARKDAKHILTQ 669 ++L+ A +AK I+ Sbjct: 647 DINILKCANHEAKLIVNN 664 >gi|293368690|ref|ZP_06615296.1| ATP-dependent DNA helicase RecG [Bacteroides ovatus SD CMC 3f] gi|292636231|gb|EFF54717.1| ATP-dependent DNA helicase RecG [Bacteroides ovatus SD CMC 3f] Length = 698 Score = 366 bits (940), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 241/677 (35%), Positives = 366/677 (54%), Gaps = 43/677 (6%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + + L+K + + + DL++Y P +IDR I EI + + G I Sbjct: 14 GVGPQKAAVLNKELEIYSLH-----DLIYYFPYKYIDRSRIYYIHEIDGNMPYIQLKGEI 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 + ++R +DGTG + L++F +L I + GK RI Sbjct: 69 LGFETIGEGRQRRLTAHFSDGTGVVDLVWFQGIKYILGKYKLHEEYI-IFGKPTVFNGRI 127 Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190 + HP ++ ++ Y+ + +E + + LPE + Sbjct: 128 NVAHPDVDKPEDLKLSSVGLQPYYNTTEKMKRSFLNSHAIEKMMATVIQQIQEPLPETLS 187 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSP-----ARERLAYDELLAGQIALLLMRK 245 LL + + EA IH P T+P A+ RL ++EL Q+ +L K Sbjct: 188 SKLLAEHHLMPLTEALRNIHFP--------TNPDVLRRAQYRLKFEELFYVQLNILRYAK 239 Query: 246 QFKKEIGIPINVEGKIAQKI--------LRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 +K G I +K+ +N+PF T +Q+ +K+I D+ +M R+ Sbjct: 240 DRQKR------YRGYIFEKVGDVFNTFYTKNLPFQLTGAQKRVLKEIRNDVGSGRQMNRL 293 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 LQGDVGSGKTLVAL++M A++ G QA +MAP ILA QHYE IK+ I VE++TG Sbjct: 294 LQGDVGSGKTLVALMSMLLALDNGYQACMMAPTEILANQHYETIKELLFGMDIRVELLTG 353 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 ++ R L + G I+IGTHA+ +D++ + L V++DEQHRFGV QR +L K Sbjct: 354 SIKGKRREAILTGLLTGDVKILIGTHAVIEDTVNFSSLGFVVIDEQHRFGVAQRARLWSK 413 Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PHVL+MTATPIPRTL +T GD+D+S I E P GRKPI T+ NR + + ++ Sbjct: 414 NVQPPHVLVMTATPIPRTLAMTLYGDLDVSIIDELPPGRKPITTIHQFDNRRESMYRSVR 473 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMD 535 + EG++ Y + P I+E ++ + +++ E + + E F ++ +HG+M +K+ M Sbjct: 474 KQIEEGRQVYIVYPLIKESEKIDLKNLEEGYQHILEEFPKCTVCKVHGKMKPAEKDEQMQ 533 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F +G ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CIL+ Sbjct: 534 LFVSGKAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCILV 593 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDS 654 + L++++ RL ++ T DGF IAE DLK R G++ G +QSG+ L IA Sbjct: 594 TNYKLTEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIVRDGQ 653 Query: 655 LLEIARKDAKHILTQDP 671 LL+ R A+ I+ QDP Sbjct: 654 LLQYVRAIAESIVEQDP 670 >gi|242373518|ref|ZP_04819092.1| DNA helicase RecG [Staphylococcus epidermidis M23864:W1] gi|242348881|gb|EES40483.1| DNA helicase RecG [Staphylococcus epidermidis M23864:W1] Length = 682 Score = 366 bits (940), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 221/660 (33%), Positives = 370/660 (56%), Gaps = 22/660 (3%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L +G+G K L ++ N DL+ Y P+ + D +++ ++ VT+ Sbjct: 13 LDKIKGIGPKRLTLLEEL------NIHTVEDLVLYLPTRYEDNTV-IDLNQAEDQSTVTV 65 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITL-LFFYRKTEMLKNVFFEGRKITVTGKIKK 131 G + + R K+ ++ I + F+ + + K + G +TV GK + Sbjct: 66 QGEVYSTPAVAFFGRNKSKLTVHIMVNNIAVKCVFFNQPYLKKKIELHG-TVTVKGKWNR 124 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190 K I + + +F N Q + +E VY + G+ + I +AL + + EW+ Sbjct: 125 AKQEI---NGNRMFFNEQTTQDDVQLEPVYRIKEGIKQKQIRDNIRQALEDVTI-HEWLS 180 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKK 249 DL +K ++ +H+P KD + AR A+ EL ++ + L R + Sbjct: 181 DDLREKYKLETLEYTLRTLHHP---KDKQSLLRARRTYAFTELFMFELRMQWLNRLEKTS 237 Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309 + I I+ + ++ + ++PF T +Q++++ +I +D+ RM R+LQGDVGSGKT+V Sbjct: 238 DEAIEIDYDINKVKEFIDHLPFELTDAQKTSVNEIFRDLKAPIRMHRLLQGDVGSGKTVV 297 Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369 A I M A AG Q+ +M P ILA+QH E + + ++T + V ++TG++ RR LE Sbjct: 298 AAICMYALKTAGYQSALMVPTEILAEQHAESLIELFRDT-MNVALLTGSVKGKKRRILLE 356 Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429 ++ +G +IGTHAL QD + + + LVI DEQHRFGV QR L +K +VL MTAT Sbjct: 357 QLENGSIDCLIGTHALIQDDVIFENVGLVITDEQHRFGVNQRQSLREKGAMTNVLFMTAT 416 Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489 PIPRTL ++ G++D+S I + P GRKPI T R D+V+ ++ L +G++AY IC Sbjct: 417 PIPRTLAISVFGEMDVSSIKQLPKGRKPIITSWAKHERYDQVLTQMTSELRKGRQAYVIC 476 Query: 490 PQIEEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 P IE + + ++VV + SL +++ T + ++HG+++ +K+ VM F N +L++ Sbjct: 477 PLIESSEHLEDVQNVVALYESLQQYYGTEKVGLLHGKLTAEEKDDVMQRFSNHEIDILVS 536 Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607 TTV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E S C+L+ P ++ R Sbjct: 537 TTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIER 595 Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 ++++ T DGF ++E DL+ R G+ G+KQSG+P FL+A +LE+AR +A ++ Sbjct: 596 MTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANIVEDYRMLEVARDEAAQLI 655 >gi|229547467|ref|ZP_04436192.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX1322] gi|256854780|ref|ZP_05560144.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis T8] gi|229307391|gb|EEN73378.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX1322] gi|256710340|gb|EEU25384.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis T8] gi|315028368|gb|EFT40300.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX4000] Length = 678 Score = 366 bits (940), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 220/628 (35%), Positives = 359/628 (57%), Gaps = 20/628 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98 DLL Y+P + D + +SEI ++ VT+ G + S + +K R ++++ Sbjct: 31 DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 I + FF + LK+ +I V GK + + + +++D P+ Sbjct: 90 --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 + V L + E S ++ E + DLL+K S EA +H P ++ Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LIEEILPNDLLEKYRLMSRKEAMWAMHFPSNPEE- 200 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277 + A+ R+ ++E Q+ + ++KQ K E G+ I + + + +PF T +Q Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDVDRLKTFTQGLPFELTGAQ 258 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + +I +D+ M R+LQGDVGSGKT+VA IA+ A + AG Q +M P ILAQQH Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 E +++ ++ ++TG+ RR LE +A+G+ I++GTHAL Q + +++L L Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI DEQHRFGV QR L +K P VL MTATPIPRTL +T+ G++D+S I E PAGR P Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516 I+T I ++D V+E ++ L+ G +AY ICP IEE + + ++ E F + ++ Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + ++HG+M + +K+ +M FK+ +LL++TTVIEVG++V +A++++I +A+ FGLAQ Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG S CIL+ +P ++ R+ ++ T +GF+++E DL+ R GE+ G Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663 +QSG+P+F + ++LE+AR++A Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645 >gi|57866670|ref|YP_188376.1| ATP-dependent DNA helicase RecG [Staphylococcus epidermidis RP62A] gi|81674916|sp|Q5HPW4|RECG_STAEQ RecName: Full=ATP-dependent DNA helicase recG gi|57637328|gb|AAW54116.1| ATP-dependent DNA helicase RecG [Staphylococcus epidermidis RP62A] Length = 682 Score = 366 bits (940), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 223/659 (33%), Positives = 363/659 (55%), Gaps = 20/659 (3%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L +G+G K L ++ N DL+ Y P+ + D +++ ++ VT+ Sbjct: 13 LDKIKGIGPKRLALLEEL------NIKSVEDLVLYLPTRYEDNTV-IDLNQADDQATVTV 65 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G + + R K+ ++ I + + LK +T+ GK + Sbjct: 66 QGEVYSSPTVAFFGRNKSKLTVHLMINHIAVKCVFFNQPYLKKKLELNSIVTIKGKWNRN 125 Query: 133 KNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191 K I + + IF N Q + +E VY + G+ + I +ALS + + EW+ Sbjct: 126 KQEI---NGNRIFFNDQKNQEDAHLEPVYRVKEGIKQKQLRDNIRQALSDVTI-HEWLTD 181 Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKE 250 DL +K ++A +H+P ++ AR A+ EL ++ + L R + + Sbjct: 182 DLREKYKLETLAYTIQTLHHPIDKQNL---LRARRTYAFTELFMFELRMQWLNRLEKTSD 238 Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310 I IN + ++ + ++PF T +Q+ ++ +I +D+ RM R+LQGDVGSGKT+VA Sbjct: 239 EAIEINYDINKVKQFIDSLPFELTDAQKVSVNEIFRDLKAPIRMHRLLQGDVGSGKTIVA 298 Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370 I M A AG Q+ +M P ILA+QH E + + NT + V ++TG++ RR LE+ Sbjct: 299 AICMYALKTAGYQSALMVPTEILAEQHAESLMQLFGNT-MNVALLTGSVKGKKRRLLLEQ 357 Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430 + +G +IGTHAL QD + + + LVI DEQHRFGV QR L +K +VL MTATP Sbjct: 358 LENGTIDCLIGTHALIQDDVVFNNVGLVITDEQHRFGVNQRQILREKGAMTNVLFMTATP 417 Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490 IPRTL ++ G++D+S I + P GRKPIKT + D+V+ ++ L +G++AY ICP Sbjct: 418 IPRTLAISVFGEMDVSSIKQLPKGRKPIKTSWAKHEQYDQVLAQMSNELKKGRQAYVICP 477 Query: 491 QIEEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548 IE + + ++VVE + SL + + ++HG+M+ DK+ VM F +L++T Sbjct: 478 LIESSEHLEDVQNVVELYESLQSDYGNEKVGLLHGKMTAEDKDQVMQKFSEHEIDILVST 537 Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608 TV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E S C+L+ P ++ R+ Sbjct: 538 TVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIERM 596 Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 +++ T DGF ++E DL+ R G+ G+KQSG+P FL+A +LE+AR +A ++ Sbjct: 597 TIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANVVEDYRMLEVARDEAAELI 655 >gi|302344911|ref|YP_003813264.1| ATP-dependent DNA helicase RecG [Prevotella melaninogenica ATCC 25845] gi|302149743|gb|ADK96005.1| ATP-dependent DNA helicase RecG [Prevotella melaninogenica ATCC 25845] Length = 698 Score = 366 bits (940), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 229/648 (35%), Positives = 371/648 (57%), Gaps = 25/648 (3%) Query: 41 FIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYISQHSSFQLQKRRPYKIL-LNDGT 98 + DLL Y P ++DR ISE+S++ V I G I ++ KR+ + DG Sbjct: 31 YRDLLEYFPYKYVDRTKLYLISELSQDMPFVQIKGRILSFEETEMGKRKKRIVAHFTDGH 90 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 G I + ++ T+ + + ++ + GK R HP + +N ++ Sbjct: 91 G-ICDIVWFNGTKYIYQNYQVNKEYIIFGKPTFFNGRFQFTHPDIDDASQLQLNDMGMQP 149 Query: 159 VYSLP--------TGLSVDLFKKIIVEALSR--LPVLPEWIEKDLLQKKSFPSIAEAFNI 208 Y T +V+ K+++ L+ LP +I L S A Sbjct: 150 FYVTTEKMKKAGITSRAVEKLTKMLISKLTEPLEETLPPFITTHL----HLISRDAAMRK 205 Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPIN-VEGKIAQKIL 266 IH P+ D T AR RL ++EL Q+ +L +++ G N + + Sbjct: 206 IHYPKSVDD---TQRARVRLKFEELFYVQLNILRYASDHRRKYRGYIFNRIGAQFNWFYS 262 Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 N+PF T +Q+ + +I DM+ +M R+LQGDVGSGKTLVAL++M A++ G QA + Sbjct: 263 HNLPFELTGAQKRVMHEIRADMASGRQMNRLLQGDVGSGKTLVALMSMLIAIDNGYQACM 322 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 MAP ILA+QH + IK++ + + VE++TG + R++ L+ + G +I++GTHA+ Sbjct: 323 MAPTEILAEQHLQTIKEFLKGMNLRVELLTGIVKGKKRQEVLDGLIDGSINIVVGTHAII 382 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDI 445 +D +Q+ L + +VDEQHRFGV+QR KL K+ PHVL+MTATPIPRTL +T GD+D+ Sbjct: 383 EDKVQFQHLGMAVVDEQHRFGVEQRAKLWSKSENPPHVLVMTATPIPRTLAMTIYGDLDV 442 Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 S I E P GRKPI+T+ +++ + ++ ++ G++ Y + P I+E + + +++ + Sbjct: 443 SIIDELPPGRKPIQTIHKYDDQMASLYSGIRQQINLGRQVYIVYPLIKESERMDLKNLED 502 Query: 506 RFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 F ++ + F ++ IHG+M D +KE+ M F +G ++L+ATTVIEVG++V +AS+++ Sbjct: 503 GFEAMQDIFPEFQLSKIHGKMKDKEKEAEMQKFVSGQTQILVATTVIEVGVNVPNASVMV 562 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624 I +A+ FGL+QLHQLRGRVGRG E S CIL+ + L+K + R+ ++ +T DGF IAE D Sbjct: 563 ILDAQRFGLSQLHQLRGRVGRGAEQSYCILVTNHKLTKETRKRIDIMCDTNDGFEIAEAD 622 Query: 625 LKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKHILTQDP 671 LK R G++ G +QSG+ L IA ++++AR++A+ I+ DP Sbjct: 623 LKLRGPGDLEGTQQSGIAFDLKIADIARDGQIVQMAREEAQKIIDDDP 670 >gi|312902137|ref|ZP_07761397.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0470] gi|311290801|gb|EFQ69357.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0470] Length = 678 Score = 366 bits (940), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 220/628 (35%), Positives = 359/628 (57%), Gaps = 20/628 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98 DLL Y+P + D + +SEI ++ VT+ G + S + +K R ++++ Sbjct: 31 DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 I + FF + LK+ +I V GK + + + +++D P+ Sbjct: 90 --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 + V L + E S ++ E + DLL+K S EA +H P ++ Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LIEEILPNDLLEKYRLMSRKEAMWAMHFPSNPEE- 200 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277 + A+ R+ ++E Q+ + ++KQ K E G+ I + + + +PF T +Q Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDVDRLKTFTQGLPFELTGAQ 258 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + +I +D+ M R+LQGDVGSGKT+VA IA+ A + AG Q +M P ILAQQH Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 E +++ ++ ++TG+ RR LE +A+G+ I++GTHAL Q + +++L L Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI DEQHRFGV QR L +K P VL MTATPIPRTL +T+ G++D+S I E PAGR P Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516 I+T I ++D V+E ++ L+ G +AY ICP IEE + + ++ E F + ++ Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + ++HG+M + +K+ +M FK+ +LL++TTVIEVG++V +A++++I +A+ FGLAQ Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG S CIL+ +P ++ R+ ++ T +GF+++E DL+ R GE+ G Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663 +QSG+P+F + ++LE+AR++A Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645 >gi|167626709|ref|YP_001677209.1| ATP-dependent DNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596710|gb|ABZ86708.1| ATP-dependent DNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 679 Score = 366 bits (940), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 218/617 (35%), Positives = 357/617 (57%), Gaps = 26/617 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLL P + D + IS + ++ I G I+ + +++ ++ + ++ND TG T Sbjct: 27 DLLTIFPKEYKDTRFVSTISSLVTDKKYLIEGRIT-NLTYKKFGKKFLRFIVNDETGICT 85 Query: 103 LL---FFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEA 158 ++ F+ + +L+N + + GK+ L MVHP + + + Sbjct: 86 IVMFKFYPNQIVVLENAEY----VRCYGKVD-LSLNPQMVHPEWAVIKDGVCAIKKEFSP 140 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 VY L +S + ++I+ L V + + + LL S ++A +H + D Sbjct: 141 VYRLKK-VSDKVVSRVILSCLKSKSV-ADILPRQLLLGFGLMSFSDALYYVHALTDSIDD 198 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 + + AR + ++E+LA ++A +RK +++E + + +P+ T++Q+ Sbjct: 199 KLINIARSSIKFEEMLAYKLAEESIRKSITNSSAPRLSLEESQQNEFYKKLPYQLTQAQQ 258 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 I +IL D+SQ + M+R+LQGDVG+GKT+VA +A+ AV++G QAV+MAP ILA+QHY Sbjct: 259 RTITEILADISQSSPMIRLLQGDVGAGKTIVAAMAVYTAVKSGYQAVVMAPTEILAEQHY 318 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 F Y + I V + G + R++L I + +I+GTHA+FQ+ ++Y L LV Sbjct: 319 SFFVSYMADLDIDVVPLLGKLTAKQTRESLAVIKSKKDCVIVGTHAVFQERVEYCNLGLV 378 Query: 399 IVDEQHRFGVQQRLKLTQKAT------APHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452 +VDEQHRFGV+QRL L K++ PH L+++ATPIPRTL +T G++ +S + E P Sbjct: 379 VVDEQHRFGVEQRLALINKSSLNDRHLVPHQLIISATPIPRTLAMTLYGNLQLSILDELP 438 Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512 RKPI T ++ + +I ++K +S G++ YW+CP +EE + +F ++ +LH+ Sbjct: 439 PNRKPIVTTVLNRAKKQSLIGKVKEAVSRGEQVYWVCPLVEESENMDF---LQDVKTLHK 495 Query: 513 HFTSS-----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + + +++G M DK M FK K+L+ATTVIEVG+DV +ASI+II+N Sbjct: 496 ELAEALGKENVGLVYGSMKSKDKIQEMSDFKAKKYKVLVATTVIEVGVDVPNASIMIIDN 555 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627 AE G++QLHQLRGRVGRG + S CILLY +S+ RLS+++ ++DGF +AE+DL+ Sbjct: 556 AERLGISQLHQLRGRVGRGAKESYCILLYSDRISEVGKKRLSLVRESQDGFYLAEKDLEI 615 Query: 628 RKEGEILGIKQSGMPKF 644 R G+ILG +QSG+ F Sbjct: 616 RGAGDILGKEQSGVSTF 632 >gi|301164699|emb|CBW24258.1| putative ATP-dependent DNA helicase [Bacteroides fragilis 638R] Length = 698 Score = 366 bits (940), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 234/666 (35%), Positives = 366/666 (54%), Gaps = 21/666 (3%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + + L+K + + + DLL+Y P ++DR I EI + + G I Sbjct: 14 GVGPQKAAVLNKELEIYSLH-----DLLYYFPYKYVDRSRIYYIHEIDGNMPYIQLKGKI 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 +F ++R +DGTG + L++F + + + N + + V GK RI Sbjct: 69 LGFETFGEGRQRRLLAHFSDGTGVVDLVWF-QGIKYVTNKYKLHEEYIVFGKPTVFNGRI 127 Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190 + HP ++ ++ Y+ + +E + + L E + Sbjct: 128 NVAHPDIDSPADLKLSSMGLQPYYNTTEKMKRSFLNSHAIEKMMATVIGQIQEPLFETLS 187 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 L+ S+ +A IH P E A+ RL ++EL Q+ +L K +++ Sbjct: 188 PKLIADHHLMSLTDALRNIHFPSNP---ELLRKAQYRLKFEELFYVQLNILRYAKDRQRK 244 Query: 251 I-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 G G+I +N+PF T +Q+ +++I QD+ +M R+LQGDVGSGKTL Sbjct: 245 YRGYVFETVGEIFNTFYSKNLPFELTGAQKRVLREIRQDVGCGKQMNRLLQGDVGSGKTL 304 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VAL++M A++ G QA +MAP ILA QHY+ I++ + VE++TG++ R L Sbjct: 305 VALMSMLMALDNGFQACMMAPTEILANQHYDTIRELLFGMDVRVELLTGSVKGKKREAIL 364 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMT 427 + G HI+IGTHA+ +D++ + L L ++DEQHRFGV QR +L K+ PHVL+MT Sbjct: 365 AGLLTGDVHILIGTHAVIEDTVNFASLGLAVIDEQHRFGVAQRARLWSKSVQPPHVLVMT 424 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T GD+D+S I E P GRKPI T+ NR + + ++ + EG++ Y Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATIHQFDNRRESLYRSVRKQIEEGRQVYI 484 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 + P I+E ++ + +++ E + + E F + +HG+M +K++ M F +G ++++ Sbjct: 485 VYPLIKESEKIDLKNLEEGYLHICEEFPDCKVCKVHGKMKPAEKDAQMQLFISGDAQIMV 544 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S CIL+ L++ + Sbjct: 545 ATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCILVTTYKLTEETRK 604 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKH 665 RL ++ T DGF IAE DLK R G++ G +QSG+ L IA LL+ R A+ Sbjct: 605 RLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADMARDGQLLQYVRTIAEE 664 Query: 666 ILTQDP 671 I DP Sbjct: 665 ITDADP 670 >gi|225850660|ref|YP_002730894.1| ATP-dependent DNA helicase RecG [Persephonella marina EX-H1] gi|225644951|gb|ACO03137.1| ATP-dependent DNA helicase RecG [Persephonella marina EX-H1] Length = 802 Score = 366 bits (940), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 226/625 (36%), Positives = 348/625 (55%), Gaps = 32/625 (5%) Query: 104 LFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLP 163 ++F L + F +G+K+ + GK+ K I MV P IF + V I VYSL Sbjct: 182 VYFVHDKPFLFSFFRKGKKVLLYGKVSVFKKDISMVQPE-IFTDFDPVIHDRIVPVYSLK 240 Query: 164 -------TGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215 T +++ ++ I + L S L PE+I D+L++ +FP I +H P K Sbjct: 241 GDSTVKITSQTINHLRRGIFKILKSFLRFHPEYIPADILKRHNFPDIKSCIKNLHFPEKD 300 Query: 216 KDFEWTSPAR----ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271 +D E + R RL +D+L Q+A + + K + I V + +PF Sbjct: 301 QDIESLNSFRTVYQRRLIFDDLFILQLAQMYRKNLLKSDPAERITVSEGFIDEFESKLPF 360 Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331 T+ Q AIK+IL D+S+ M R++QGDVGSGKT+VA ++ A Q +MAP Sbjct: 361 ELTEDQRKAIKEILSDISKTVPMNRLVQGDVGSGKTVVAAASVIAVALDNKQTAVMAPTE 420 Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391 ILA QHY K +N I ++TG++PQ ++K I G+A ++IGTHAL QD ++ Sbjct: 421 ILAAQHYRTFKDILKNFGITPYLLTGSIPQKDKKKIYRLIQSGEAKVVIGTHALIQDELK 480 Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + L LV+VDEQHRFGV QR L +K+ PH L+MTATPIPRT+ + S GD+DIS I + Sbjct: 481 FKNLSLVVVDEQHRFGVIQRKALIEKSHKVPHTLIMTATPIPRTMQIASFGDLDISTIKQ 540 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P GRKP++TV+I + + ++ + +G++ + + P IEE ++ + +S E + Sbjct: 541 LPKGRKPVETVLIYDDEKKILYRKVSQEIEKGRQVFVVYPLIEESEKIDLKSAEEGYEQW 600 Query: 511 HEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 + F I ++HG+M +K+ +M+SF+ G +L++TTVIEVG+D+ +AS+++IE A Sbjct: 601 KKAFPDKKILLLHGKMPQEEKDRIMESFRKGEADILVSTTVIEVGVDIPNASVMVIEEAH 660 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK------------NSYTRLSVLKNTEDG 617 FGL+Q+HQLRGR+GRG+ C L+ + + RL +L T DG Sbjct: 661 RFGLSQIHQLRGRIGRGQYEGYCYLVLPSRFKRKLENRDEEKRRVQTVERLKILVKTNDG 720 Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ--PELHDSLLEIARKDAKHILTQDPDLTS 675 F IAEEDLK R G+I G QSG IA +L +L+IA+ +A+ ++ +DP L Sbjct: 721 FRIAEEDLKIRGGGDIAGTAQSGRLNIGIADLSRDLDRKILQIAKDEAQKLIEKDPYL-- 778 Query: 676 VRGQSIRILLYLYQYNEAFQFIRAG 700 R ++ + +Y + F + G Sbjct: 779 -RHHTVLKEIVFERYADRFDLVNVG 802 >gi|148380449|ref|YP_001254990.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A str. ATCC 3502] gi|153931726|ref|YP_001384672.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A str. ATCC 19397] gi|153935165|ref|YP_001388193.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A str. Hall] gi|148289933|emb|CAL84046.1| putative ATP-dependent DNA helicase [Clostridium botulinum A str. ATCC 3502] gi|152927770|gb|ABS33270.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A str. ATCC 19397] gi|152931079|gb|ABS36578.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A str. Hall] Length = 679 Score = 366 bits (940), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 246/681 (36%), Positives = 388/681 (56%), Gaps = 44/681 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSS--FIDRHYRPKISEISE 66 +++P++T +GVG K L K C N +DLL Y P FID + + K+ +S+ Sbjct: 3 VYSPITTLKGVGPKTKEQLEK---CMIFN---IMDLLLYFPRDYEFIDNYSKDKL--LSK 54 Query: 67 ERIVTITGYISQHSSFQLQKR-RPYKIL----LNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + I+ + Q + + R R KIL NDG I +F + +KN F G Sbjct: 55 KVIIKV-----QVENIKRDIRTRTGKILTTIIFNDGEKAIVGSWFNQP--YIKNYFKIGE 107 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 + + G +K+ + + + + I N ++V I Y L L +L K++ L Sbjct: 108 EYVLQGSLKEYRGNLTINNAQ-ILKNKCGEEVEERKIIPKYPLKGDLKNNLLIKLVDSVL 166 Query: 180 SRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 + + + LP W L++K F S+ ++ IH P K+ E + RL + ELLA Sbjct: 167 TNIDIGENLPIW----LIEKYKFLSLDKSIRTIHKPENQKELE---ESIRRLKFQELLAY 219 Query: 237 QIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 + + +++ + GI V +I ++ +PF T +Q +++I +D ++ M Sbjct: 220 CLKIAFLKEYLETATEGISFIVSEEI-NNLIEVLPFKLTNAQNKVLQEIFKDQEKEKPMN 278 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R+LQGDVGSGKT++ALI++ ++ G Q V++AP ILA QHYE K ++ + +E++ Sbjct: 279 RLLQGDVGSGKTIIALISLFNVIKNGYQGVMLAPTEILAVQHYEEALKLFKDFNLNIELL 338 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 G++ + +++ E++ G+ +IIGTHAL +D +++Y L +VI DEQHRFGV QR K+ Sbjct: 339 IGSIKVSSKKEIKEKLKEGKIDLIIGTHALIEDDVEFYNLGMVITDEQHRFGVMQRSKML 398 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 K + L+M+ATPIPR+L L+ GD+D+S I E P GR+ I T + + V Sbjct: 399 NKGKSVDTLVMSATPIPRSLTLSLYGDLDLSIIDELPPGRQKIDTYYVNDSYRKRVYNFA 458 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-SIAIIHGRMSDIDKESV 533 ++ G++ Y +CP +EEK+E N SV + ++ L E+F IAI+HG+M +K+++ Sbjct: 459 LKEINNGRQVYIVCPLVEEKEELNLNSVEKLYDDLKGEYFKEVEIAILHGKMKGKEKDTI 518 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M FK+G K LI+TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG+ S CI Sbjct: 519 MKDFKDGKIKALISTTVIEVGVNVPNATLMVIENAERFGLAQLHQLRGRVGRGKHKSYCI 578 Query: 594 LLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 L+ KN R+ ++K++ DGFL+AEEDLK R GEI G KQ G L+A Sbjct: 579 LIAR---VKNDIIRKRMEIMKSSNDGFLVAEEDLKLRGGGEIFGFKQHGSSNLLLADVIE 635 Query: 652 HDSLLEIARKDAKHILTQDPD 672 LL IA ++K I+ + + Sbjct: 636 DIHLLRIANMESKKIIDSNNE 656 >gi|288801682|ref|ZP_06407124.1| ATP-dependent DNA helicase RecG [Prevotella melaninogenica D18] gi|288335724|gb|EFC74157.1| ATP-dependent DNA helicase RecG [Prevotella melaninogenica D18] Length = 698 Score = 366 bits (940), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 229/648 (35%), Positives = 371/648 (57%), Gaps = 25/648 (3%) Query: 41 FIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYISQHSSFQLQKRRPYKIL-LNDGT 98 + DLL Y P ++DR ISE+S++ V I G I ++ KR+ + DG Sbjct: 31 YRDLLEYFPYKYVDRTKLYLISELSQDMPFVQIKGRILSFEETEMGKRKKRIVAHFTDGH 90 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 G +++F T+ + + ++ + GK R HP + +N ++ Sbjct: 91 GVCDIVWF-NGTKYIYQNYQVNKEYIIFGKPTFFNGRFQFTHPDIDDASQLQLNDMGMQP 149 Query: 159 VYSLP--------TGLSVDLFKKIIVEALSR--LPVLPEWIEKDLLQKKSFPSIAEAFNI 208 Y T +V+ K+++ L+ LP +I L S A Sbjct: 150 FYVTTEKMKKAGITSRAVEKLTKMLISKLTEPLEETLPPFITTHL----HLISRDAAMRK 205 Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPIN-VEGKIAQKIL 266 IH P+ D T AR RL ++EL Q+ +L +++ G N + + Sbjct: 206 IHYPKSVDD---TQRARVRLKFEELFYVQLNILRYASDHRRKYRGYIFNRIGAQFNWFYS 262 Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 N+PF T +Q+ + +I DM+ +M R+LQGDVGSGKTLVAL++M A++ G QA + Sbjct: 263 HNLPFELTGAQKRVMHEIRADMASGRQMNRLLQGDVGSGKTLVALMSMLIAIDNGYQACM 322 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 MAP ILA+QH + IK++ + + VE++TG + R++ L+ + G +I++GTHA+ Sbjct: 323 MAPTEILAEQHLQTIKEFLKGMNLRVELLTGIVKGKKRQEVLDGLIDGSINIVVGTHAII 382 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDI 445 +D +Q+ L + +VDEQHRFGV+QR KL K+ PHVL+MTATPIPRTL +T GD+D+ Sbjct: 383 EDKVQFQHLGMAVVDEQHRFGVEQRAKLWSKSENPPHVLVMTATPIPRTLAMTIYGDLDV 442 Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 S I E P GRKPI+T+ +++ + ++ ++ G++ Y + P I+E + + +++ + Sbjct: 443 SIIDELPPGRKPIQTIHKYDDQMASLYSGIRQQINLGRQVYIVYPLIKESERMDLKNLED 502 Query: 506 RFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 F ++ + F ++ IHG+M D +KE+ M F +G ++L+ATTVIEVG++V +AS+++ Sbjct: 503 GFEAMQDIFPEFQLSKIHGKMKDKEKEAEMQKFVSGQTQILVATTVIEVGVNVPNASVMV 562 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624 I +A+ FGL+QLHQLRGRVGRG E S CIL+ + L+K + R+ ++ +T DGF IAE D Sbjct: 563 ILDAQRFGLSQLHQLRGRVGRGAEQSYCILVTNHKLTKETRKRIDIMCDTNDGFEIAEAD 622 Query: 625 LKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKHILTQDP 671 LK R G++ G +QSG+ L IA ++++AR++A+ I+ DP Sbjct: 623 LKLRGPGDLEGTQQSGIAFDLKIADIARDGQIVQMAREEAQKIIDDDP 670 >gi|295086530|emb|CBK68053.1| ATP-dependent DNA helicase RecG [Bacteroides xylanisolvens XB1A] Length = 698 Score = 366 bits (940), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 241/677 (35%), Positives = 365/677 (53%), Gaps = 43/677 (6%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + + L+K + + + DL++Y P +IDR I EI + + G I Sbjct: 14 GVGPQKAAVLNKELEIYSLH-----DLIYYFPYKYIDRSRIYYIHEIDGNMPYIQLKGEI 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 + ++R +DGTG + L++F +L I + GK RI Sbjct: 69 LGFETIGEGRQRRLTAHFSDGTGVVDLVWFQGIKYILGKYKLHEEYI-IFGKPTVFNGRI 127 Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190 + HP ++ ++ Y+ + +E + + LPE + Sbjct: 128 NVAHPDVDKPEDLKLSSVGLQPYYNTTEKMKRSFLNSHAIEKMMATVIQQIQEPLPETLS 187 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSP-----ARERLAYDELLAGQIALLLMRK 245 LL + + EA IH P T+P A+ RL ++EL Q+ +L K Sbjct: 188 SKLLAEYHLMPLTEALRNIHFP--------TNPDVLRRAQYRLKFEELFYVQLNILRYAK 239 Query: 246 QFKKEIGIPINVEGKIAQKI--------LRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 +K G I +K+ +N+PF T +Q+ +K+I D+ +M R+ Sbjct: 240 DRQKR------YRGYIFEKVGDVFNTFYTKNLPFQLTGAQKRVLKEIRNDVGSGRQMNRL 293 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 LQGDVGSGKTLVAL++M A++ G QA +MAP ILA QHYE IK+ I VE++TG Sbjct: 294 LQGDVGSGKTLVALMSMLLALDNGYQACMMAPTEILANQHYETIKELLFGMDIRVELLTG 353 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 ++ R L + G I+IGTHA+ +D++ + L V++DEQHRFGV QR +L K Sbjct: 354 SIKGKRREAILTGLLTGDVKILIGTHAVIEDTVNFSSLGFVVIDEQHRFGVAQRARLWSK 413 Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 PHVL+MTATPIPRTL +T GD+D+S I E P GRKPI T+ NR + + + Sbjct: 414 NVQPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPITTIHQFDNRRESMYRSVH 473 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMD 535 + EG++ Y + P I+E ++ + +++ E + + E F ++ +HG+M +K+ M Sbjct: 474 KQIEEGRQVYIVYPLIKESEKIDLKNLEEGYQHVLEEFPKCTVCKVHGKMKPAEKDEQMQ 533 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F +G ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CIL+ Sbjct: 534 LFVSGKAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCILV 593 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDS 654 + L++++ RL ++ T DGF IAE DLK R G++ G +QSG+ L IA Sbjct: 594 TNYKLTEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIVRDGQ 653 Query: 655 LLEIARKDAKHILTQDP 671 LL+ R A+ I+ QDP Sbjct: 654 LLQYVRAIAESIVEQDP 670 >gi|242242509|ref|ZP_04796954.1| ATP-dependent DNA helicase RecG [Staphylococcus epidermidis W23144] gi|242234083|gb|EES36395.1| ATP-dependent DNA helicase RecG [Staphylococcus epidermidis W23144] Length = 682 Score = 366 bits (939), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 223/659 (33%), Positives = 363/659 (55%), Gaps = 20/659 (3%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L +G+G K L ++ N DL+ Y P+ + D +++ ++ VT+ Sbjct: 13 LDKIKGIGPKRLALLEEL------NIKSVEDLVLYLPTRYEDNTV-IDLNQADDQATVTV 65 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G + + R K+ ++ I + + LK +T+ GK + Sbjct: 66 QGEVYSSPTVAFFGRNKSKLTVHLMINHIAVKCVFFNQPYLKKKLELNSIVTIKGKWNRN 125 Query: 133 KNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191 K I + + IF N Q + +E VY + G+ + I +ALS + + EW+ Sbjct: 126 KQEI---NGNRIFFNDQKNQEDAHLEPVYRVKEGIKQKQLRDNIRQALSDVTI-HEWLTD 181 Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKE 250 DL +K ++A +H+P ++ AR A+ EL ++ + L R + + Sbjct: 182 DLREKYKLETLAYTIQTLHHPIDKQNL---LRARRTYAFTELFMFELRMQWLNRLEKTSD 238 Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310 I IN + ++ + ++PF T +Q+ ++ +I +D+ RM R+LQGDVGSGKT+VA Sbjct: 239 EAIEINYDINKVKQFIDSLPFELTDAQKVSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVA 298 Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370 I M A AG Q+ +M P ILA+QH E + + NT + V ++TG++ RR LE+ Sbjct: 299 AICMYALKTAGYQSALMVPTEILAEQHAESLMQLFGNT-MNVALLTGSVKGKKRRLLLEQ 357 Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430 + +G +IGTHAL QD + + + LVI DEQHRFGV QR L +K +VL MTATP Sbjct: 358 LENGTIDCLIGTHALIQDDVVFNNVGLVITDEQHRFGVNQRQILREKGAMTNVLFMTATP 417 Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490 IPRTL ++ G++D+S I + P GRKPIKT + D+V+ ++ L +G++AY ICP Sbjct: 418 IPRTLAISVFGEMDVSSIKQLPKGRKPIKTSWAKHEQYDQVLAQMSNELKKGRQAYVICP 477 Query: 491 QIEEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548 IE + + ++VVE + SL + + ++HG+M+ DK+ VM F +L++T Sbjct: 478 LIESSEHLEDVQNVVELYESLQSDYGNEKVGLLHGKMTAEDKDQVMQKFSEHEIDILVST 537 Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608 TV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E S C+L+ P ++ R+ Sbjct: 538 TVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIERM 596 Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 +++ T DGF ++E DL+ R G+ G+KQSG+P FL+A +LE+AR +A ++ Sbjct: 597 TIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANVVEDYRMLEVARDEAAELI 655 >gi|317057047|ref|YP_004105514.1| ATP-dependent DNA helicase RecG [Ruminococcus albus 7] gi|315449316|gb|ADU22880.1| ATP-dependent DNA helicase RecG [Ruminococcus albus 7] Length = 678 Score = 366 bits (939), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 238/691 (34%), Positives = 371/691 (53%), Gaps = 34/691 (4%) Query: 5 FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64 L+ L P+ GVG K S K+ DLL++ P +ID + + + Sbjct: 1 MLSELAKPVMYLSGVGPKKSELYEKL------GVKTVYDLLYHFPRYYIDLNEPQAVRDA 54 Query: 65 SEERIVTITGYISQHSSFQLQKR--RPYKILLNDGTGEITLL-----FFYRKTEMLKNVF 117 V + G + + +R YK ++ D T +IT++ F ++ E+ + Sbjct: 55 PLNEQVVLKGRVVRKLPEGNIRRGLTVYKAIVTDDTADITIVIYNAGFMFKALEVGHEYY 114 Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G+ +TG + + + ++P ++ VY L GL+ ++ + Sbjct: 115 LVGK---LTGNMLRREINSPQIYPV--------AGTDPVQPVYRLTEGLTQKQLRQNVHT 163 Query: 178 ALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL L + E + D+++++ S++ A +H P E A+ RL +DELL Sbjct: 164 ALGALDGSIYEPLPNDVVREQGLCSLSYALQNVHYPTDMHTLEL---AKSRLVFDELLTL 220 Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 + +L+M+ + + G +N E + +PF T Q+SAI D ++DM + M R Sbjct: 221 ALGMLMMKNRSRDNTGCQMNDES--VDEYFSALPFELTAGQKSAINDCIEDMRKPFPMNR 278 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 ++QGDVGSGKT VA A A + G Q +MAP ILA QHY+ +K + + + V ++T Sbjct: 279 LIQGDVGSGKTAVAAGAAYFAYKNGCQTALMAPTEILAGQHYDTLKAFLEPLGVKVVLLT 338 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G++ + K IA G+ ++I+GTHAL Q S ++ +L LVI DEQHRFGV+QR L Sbjct: 339 GSLTPKKKEKIKAEIAAGEYNVIVGTHALVQASTEFKRLGLVITDEQHRFGVEQRAMLAG 398 Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 K PH L+M+ATPIPRTL L GD+DIS + E P GR+P++T + + +K Sbjct: 399 KGDHPHKLVMSATPIPRTLALMIYGDLDISVLKELPKGRQPVETYAVTGKLRERAFGYVK 458 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVM 534 L EG++AY +CP IEE +S+ R V + E S + ++HGR+S KE VM Sbjct: 459 QYLEEGRQAYIVCPMIEE-SDSDLRDVKSYAKEISEGAFSGYRVGLLHGRLSAESKEKVM 517 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 FK +L++TTV+EVG+DV +A++++IEN++ FGL+QLHQLRGRVGRGE S CIL Sbjct: 518 KKFKAHELDILVSTTVVEVGVDVPNAAVMVIENSDRFGLSQLHQLRGRVGRGEHKSVCIL 577 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 + P ++ RL +L + DGF I+++DLK R G+ G +Q G+PK IA Sbjct: 578 ITDNP-TEEVVQRLKILSSCHDGFEISQQDLKLRGPGDFFGSRQHGLPKMKIADMSQDMD 636 Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILL 685 +L A++ AK IL +D L + +R L+ Sbjct: 637 VLVRAQETAKQILCKDTHLDKGENRGLRELV 667 >gi|239982544|ref|ZP_04705068.1| ATP-dependent DNA helicase RecG [Streptomyces albus J1074] gi|291454386|ref|ZP_06593776.1| ATP-dependent DNA helicase [Streptomyces albus J1074] gi|291357335|gb|EFE84237.1| ATP-dependent DNA helicase [Streptomyces albus J1074] Length = 734 Score = 366 bits (939), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 233/715 (32%), Positives = 376/715 (52%), Gaps = 71/715 (9%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGE 100 DLL ++P + +R ++++ + VT+ +S +F + + ++ + DG+G Sbjct: 34 DLLHHYPRRYAERGELTTLADLPLDEHVTVVAQVSDARVHTFNAGRGKRLEVTITDGSGS 93 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF---HNSQDVN----- 152 + L+FF R G + GK+ +R+ + HP Y ++DV+ Sbjct: 94 LRLVFFGRGVHKPHQDLQPGTRAMFAGKVSVFNHRLQLAHPAYQLLRGDGAEDVSSWAGA 153 Query: 153 ----FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI 208 +P + S +VD EAL LP L + + + EA Sbjct: 154 LIPLYPATAKLESWKIAKAVDAVLPSADEALDPLP-------GALREGRGLLPLPEALRK 206 Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKILR 267 IH P+ D + AR RL +DE Q+AL R + +P + Sbjct: 207 IHRPQSQADV---AQARARLKWDEAFVLQVALARRRHAEGQLSAVPRRPAPDGLLTAFDA 263 Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 +PF+ T+ Q+ ++I D++ + M R+LQG+VGSGKT+VAL AM A V++GGQA ++ Sbjct: 264 RLPFTLTEGQQKVSREIFDDLATDHPMHRLLQGEVGSGKTMVALRAMLAVVDSGGQAAML 323 Query: 328 APIGILAQQHYEFIKKYTQN-------------TQIIVEIITGNMPQAHRRKALERIAHG 374 AP +LAQQH+ I + + T+++ ++TG+M A RRKAL +A G Sbjct: 324 APTEVLAQQHHRSITEMMDDLADGSTLGAPEHATKVV--LLTGSMTAAARRKALLDLATG 381 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK------ATAPHVLLMTA 428 +A I+IGTHAL +D++Q+++L LV+VDEQHRFGV+QR L K A PH+L+MTA Sbjct: 382 EAGIVIGTHALIEDTVQFHELGLVVVDEQHRFGVEQRDALRAKGHTKEEARTPHLLVMTA 441 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKK 484 TPIPRT+ +T GD++ S + + PAGR PI T ++P + ER++ + G + Sbjct: 442 TPIPRTVAMTVFGDLETSVLDQLPAGRSPISTHVVPAQDKPHFLARAWERVREEVENGHQ 501 Query: 485 AYWICPQIEEKKESNFRSVVERFNS------------LHEHFTSS------IAIIHGRMS 526 AY +CP+I +++E + ++ + E + I ++HGRM+ Sbjct: 502 AYVVCPRIGDEEEGGTKGTKKKAADEGDRRPPLAVLEVAEQLAAGPLAGLRIEVLHGRMA 561 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 DK+ VM F G +L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQLRGRVGRG Sbjct: 562 PDDKDDVMRRFAAGEVDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRG 621 Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646 C+L+ P + + RL + T DGF ++ DL+QR+EG++LG QSG+ L Sbjct: 622 SAPGLCLLVTDMPEAAPARARLGAVAATLDGFELSRIDLEQRREGDVLGQAQSGVRSSLR 681 Query: 647 AQPELHD-SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 + D ++ AR++A + +DPDL + ++R L E Q++ G Sbjct: 682 MLAVIEDEEIIAEAREEATRTVAEDPDLAGL--PALRTALDALLDEEREQYLDKG 734 >gi|332296364|ref|YP_004438287.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense DSM 14796] gi|332179467|gb|AEE15156.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense DSM 14796] Length = 667 Score = 366 bits (939), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 225/606 (37%), Positives = 348/606 (57%), Gaps = 39/606 (6%) Query: 85 QKRRPYKILLNDGTGEITLLFF---YRKTEMLK---NVFFEGRKITVTGKIKKLKNR-II 137 +++R K+ LN + + +F Y+K ++LK N +F G + L NR ++ Sbjct: 63 ERKRLVKVELNIEGKKASACWFNQPYKKNQILKLRPNAYFAGEAV--------LNNRELV 114 Query: 138 MVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK 197 HP I + I Y L S +K I + + E + + L+ + Sbjct: 115 FYHP--IISKDPIYSDSGIYPEYCLEINDSE--IRKTIKDIFDEKKEIKETLPESLINRL 170 Query: 198 SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257 + +A +H P KD AR+R+A+DELL ++ +L +++F + +N Sbjct: 171 KLMKLKDALYNLHFP---KDLRSLESARKRIAFDELLQWKLTILTEKQKFSSKSAPILNP 227 Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317 E + +K L ++PF+ T+ Q+ I +I D+S+ M R+LQGDVGSGKT++A+ A+ A Sbjct: 228 ESDLVKKFLSSLPFTLTEDQKKVIDEIFSDVSKNKPMQRLLQGDVGSGKTVIAVSALLCA 287 Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377 V +G QA M P IL++QHYE ++++ + + + ++TG+ ++ R +E I G Sbjct: 288 VSSGFQAAFMVPSEILSKQHYEKLREWLKPMGVKIYLLTGSTKKSERNLIIEEINKGVPL 347 Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437 I+ GTHAL + ++ L LV++DEQHRFGV+QRL L +K PH L+MTATPIPRTL Sbjct: 348 ILTGTHALITEGLELKNLGLVVIDEQHRFGVRQRLSLIEKGICPHTLVMTATPIPRTLAS 407 Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY-----WICPQI 492 D+D S+I P GRK I T I IN+ D I++L ++ E K Y ++CP I Sbjct: 408 IFYADLDYSEIRTMPEGRKEIVTKI--INKSD--IKKLYSIIRENLKQYDSRVFYVCPLI 463 Query: 493 EEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551 E+ SV +R L F + +IHGR+S +++ +M FK G K+L++TTVI Sbjct: 464 EDSNSLKLESVKKRHKELVNIFPEFEVGLIHGRLSQSEQDKIMQDFKTGKIKILVSTTVI 523 Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT--RLS 609 EVGID+ A+I++IEN E FGLAQLHQLRGR+GRG S+C LL + SY+ R+ Sbjct: 524 EVGIDIPQANIMVIENPERFGLAQLHQLRGRIGRGNLSSTCYLL----ADEESYSSRRVQ 579 Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKHILT 668 + + +GF +AE DL+ R +GEI+G KQSG+ + L +A P ++ IA+K A+ I++ Sbjct: 580 IFEKVNNGFELAERDLELRGQGEIIGSKQSGLDQTLKVANPLKDTDIMRIAQKVAELIIS 639 Query: 669 QDPDLT 674 +DPDLT Sbjct: 640 KDPDLT 645 >gi|332976649|gb|EGK13490.1| DNA helicase RecG [Desmospora sp. 8437] Length = 681 Score = 366 bits (939), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 238/669 (35%), Positives = 371/669 (55%), Gaps = 27/669 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP-KISEISEERIV 70 P++ GVG K + L K+ DLL Y P + D +R ISE + Sbjct: 7 PVTEVPGVGPKRAEELEKL------GIRTVADLLGYFPYRYDD--FRVIDISEAIHDDKA 58 Query: 71 TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 T+ G + S + ++ ++ + + + L+ G +I V+G Sbjct: 59 TLEGVLYGPPSIRWYGKKKSRLTARIEVNGVHVGVVWFNQPFLRKKLKPGLRIIVSGTWD 118 Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-----PVL 185 +R+ + + +E VYS+ + V ++ I +A + VL Sbjct: 119 A--HRLQLTADRSWIGDESKGRVNRMEPVYSVTGSIQVSWLRRTIHQAFAAFGREIEEVL 176 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 PE I + + A+A +H P K +D AR R+ Y+EL ++ LL RK Sbjct: 177 PEGIRR----RYRLLDRAKAMYYLHFP-KGRDE--GKQARRRMVYEELFLYELRLLWHRK 229 Query: 246 QFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 Q K ++ GI + + + ++R++PF T +Q +++IL DM +RM R+LQGDVGS Sbjct: 230 QQKERDRGIAHRFDRERVEALIRDLPFPLTGAQRRVVEEILADMEAGSRMNRLLQGDVGS 289 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKT+VA I + A +G Q +M P ILA+QH +++ I +E++TG+M + Sbjct: 290 GKTVVAAIILYANWLSGYQGALMVPTEILAEQHLRSLQETLAPVGIHLELLTGSMTTREK 349 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424 R L RI G A +++GTHAL Q+++ Y L LVI DEQHRFGV+QR L +K +P VL Sbjct: 350 RDVLSRIQMGLADLVVGTHALIQENVHYRNLGLVITDEQHRFGVRQRSILREKGESPDVL 409 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 MTATPIPRTL +T+ GD+DIS I E PAGR+P++T + + V++ + EG++ Sbjct: 410 HMTATPIPRTLAITAYGDMDISTIDEMPAGRQPVETFWVKRDVWSRVVDFIGKTCREGRQ 469 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCK 543 AY ICP IEE ++ + ++ F + + ++HGRM+ +KE VM SF + + Sbjct: 470 AYVICPLIEESEKVDLQNAQAVFEEIAVSLAPIRVGLLHGRMTPAEKEEVMQSFADNQTQ 529 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTV+EVG++V +A++++I++A+ FGLAQLHQLRGRVGRG ++CIL+ P S+ Sbjct: 530 VLVSTTVVEVGVNVPNATVMVIDDADRFGLAQLHQLRGRVGRGGGEATCILVADPK-SET 588 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ V+ +T DGF IA DL+ R G+ G+KQSG P+F +A +LE+AR DA Sbjct: 589 GVERMRVMTDTTDGFEIARRDLELRGPGDFFGVKQSGAPEFRVADLIGDFRVLEVARADA 648 Query: 664 KHILTQDPD 672 +L +DPD Sbjct: 649 AALL-EDPD 656 >gi|160890807|ref|ZP_02071810.1| hypothetical protein BACUNI_03252 [Bacteroides uniformis ATCC 8492] gi|270295805|ref|ZP_06202005.1| ATP-dependent DNA helicase RecG [Bacteroides sp. D20] gi|317479756|ref|ZP_07938878.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 4_1_36] gi|156859806|gb|EDO53237.1| hypothetical protein BACUNI_03252 [Bacteroides uniformis ATCC 8492] gi|270273209|gb|EFA19071.1| ATP-dependent DNA helicase RecG [Bacteroides sp. D20] gi|316904126|gb|EFV25958.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 4_1_36] Length = 698 Score = 366 bits (939), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 234/666 (35%), Positives = 372/666 (55%), Gaps = 21/666 (3%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + + L+K + + + DLL+Y P ++DR I EI + + G I Sbjct: 14 GVGPQRASVLNKELGIYSLH-----DLLYYFPYKYVDRSRIYYIQEIDGTMPYIQLKGEI 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 + ++R +DGTG + L++F + + L + ++ V GK RI Sbjct: 69 LSFETAGEGRQRRLIAHFSDGTGVVDLVWF-QGIKYLVGKYKVHQEYIVFGKPTFFNGRI 127 Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190 M HP + ++ ++ Y+ + +E + V LPE + Sbjct: 128 NMAHPDIDSASDLKLSSMGLQPYYNTTEKMKRSSLNSHAIEKMMNTVVQQLREPLPETLS 187 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 +L + + EA IH P + A+ RL ++EL Q+ +L K +++ Sbjct: 188 PAILAEHHLMPLTEALVNIHFPANP---DLLRKAQYRLKFEELFYVQLNILRYAKDRQRK 244 Query: 251 I-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 G G++ RN+PF T +Q+ +K+I +D+ +M R+LQGDVGSGKTL Sbjct: 245 YRGYIFERVGEVFNTFYSRNLPFELTNAQKRVLKEIRKDVGSGKQMNRLLQGDVGSGKTL 304 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VAL++M A++ G QA +MAP ILA QHYE I++ ++ VE++TG++ R L Sbjct: 305 VALMSMLMALDNGFQACMMAPTEILANQHYETIRELLYGMEVRVELLTGSVKGKRREAIL 364 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAPHVLLMT 427 + G HI+IGTHA+ +D++ + L LV++DEQHRFGV QR +L T+ PHVL+MT Sbjct: 365 AGLLTGDIHILIGTHAVIEDTVNFASLGLVVIDEQHRFGVAQRARLWTKNVQPPHVLVMT 424 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T GD+D+S I E P GRKPI T+ +R + + + ++EG++ Y Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPIVTLHQFDSRRISLYQSMHKQIAEGRQVYI 484 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 + P I+E ++ + +++ E + + E F + +HG+M +K++ M F +G ++++ Sbjct: 485 VYPLIKESEKIDLKNLEEGYLHVCEEFPECRVCKVHGKMKPAEKDAQMQLFVSGEAQIMV 544 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 ATTVIEVG++V +AS+++IENAE FGL+QLHQLRGRVGRG + S CIL+ L++++ Sbjct: 545 ATTVIEVGVNVPNASVMVIENAERFGLSQLHQLRGRVGRGADQSYCILVTGYKLAEDTRK 604 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKH 665 RL ++ T DGF IAE DLK R G++ G +QSG+ L IA LL+ R+ A+ Sbjct: 605 RLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLLQYVREVAQT 664 Query: 666 ILTQDP 671 ++ DP Sbjct: 665 VVDADP 670 >gi|153938732|ref|YP_001391791.1| ATP-dependent DNA helicase RecG [Clostridium botulinum F str. Langeland] gi|152934628|gb|ABS40126.1| ATP-dependent DNA helicase RecG [Clostridium botulinum F str. Langeland] gi|295319817|gb|ADG00195.1| ATP-dependent DNA helicase RecG [Clostridium botulinum F str. 230613] Length = 679 Score = 366 bits (939), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 241/676 (35%), Positives = 384/676 (56%), Gaps = 34/676 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSS--FIDRHYRPKISEISE 66 +++P++T +GVG K L K C N +DLL Y P FID + + K+ +S+ Sbjct: 3 VYSPITTLKGVGPKTKEQLEK---CMIFN---IMDLLLYFPRDYEFIDNYSKDKL--LSK 54 Query: 67 ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 + I+ + + + I+ NDG I +F + +KN F G + + Sbjct: 55 KVIIKVQVENIKRDIRTRTGKVLTTIIFNDGEKAIVGSWFNQP--YIKNYFKIGEEYVLQ 112 Query: 127 GKIKKLKNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184 G +K+ + + + + I N +++V I Y L L +L K++ L+ + + Sbjct: 113 GSLKEYRGNLTINNAQ-ILKNKCTEEVEERKIIPKYPLKGDLKNNLLIKLVDSVLTNIDI 171 Query: 185 ---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 LP W L++K F S+ ++ IH P K+ E + RL + ELLA + + Sbjct: 172 GENLPIW----LIEKYKFLSLDKSIRTIHKPENQKELE---ESIRRLKFQELLAYCLKIA 224 Query: 242 LMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 +++ + GI V +I ++ +PF T +Q +++I +D ++ M R+LQG Sbjct: 225 FLKEYLETATEGISFIVSEEI-NNLIEVLPFKLTNAQNKVLQEIFKDQEKEKPMNRLLQG 283 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT++ALI++ ++ G Q V++AP ILA QHYE K ++ + +E++ G++ Sbjct: 284 DVGSGKTIIALISLFNVIKNGYQGVMLAPTEILAVQHYEEALKLFKDFNLNIELLIGSIK 343 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 + +++ E++ G+ +IIGTHAL +D +++Y L +VI DEQHRFGV QR K+ K + Sbjct: 344 VSSKKEIKEKLKEGKIDLIIGTHALIEDDVEFYNLGMVITDEQHRFGVMQRSKMLNKGKS 403 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 L+M+ATPIPR+L L+ GD+D+S I E P GR+ I T + + V ++ Sbjct: 404 VDTLVMSATPIPRSLTLSLYGDLDLSIIDELPPGRQKIDTYYVNDSYRKRVYNFALKEIN 463 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-SIAIIHGRMSDIDKESVMDSFK 538 G++ Y +CP +EEK+E N SV + ++ L E+F IAI+HG+M +K+++M FK Sbjct: 464 NGRQVYIVCPLVEEKEELNLNSVEKLYDDLKGEYFKEVEIAILHGKMKGKEKDTIMKDFK 523 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G K LI+TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG+ S CIL+ Sbjct: 524 EGKIKALISTTVIEVGVNVPNATLMVIENAERFGLAQLHQLRGRVGRGKHKSYCILIAR- 582 Query: 599 PLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 KN R+ ++K++ DGFL+AEEDLK R GEI G KQ G L+A LL Sbjct: 583 --VKNDIIRKRMEIMKSSNDGFLVAEEDLKLRGGGEIFGFKQHGSSNLLLADVIEDIHLL 640 Query: 657 EIARKDAKHILTQDPD 672 IA ++K I+ + + Sbjct: 641 RIANMESKKIIDSNNE 656 >gi|168180622|ref|ZP_02615286.1| ATP-dependent DNA helicase RecG [Clostridium botulinum NCTC 2916] gi|182668552|gb|EDT80531.1| ATP-dependent DNA helicase RecG [Clostridium botulinum NCTC 2916] Length = 679 Score = 366 bits (939), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 246/681 (36%), Positives = 388/681 (56%), Gaps = 44/681 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSS--FIDRHYRPKISEISE 66 +++P++T +GVG K L K C N +DLL Y P FID + + K+ +S+ Sbjct: 3 VYSPITTLKGVGPKTKEQLEK---CMIFN---IMDLLLYFPRDYEFIDNYSKDKL--LSK 54 Query: 67 ERIVTITGYISQHSSFQLQKR-RPYKIL----LNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + I+ + Q + + R R KIL NDG I +F + +KN F G Sbjct: 55 KVIIKV-----QVENIKRDIRTRTGKILTTIIFNDGEKAIVGSWFNQP--YIKNYFKIGE 107 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 + + G +K+ + + + + I N +++V I Y L L +L K++ L Sbjct: 108 EYVLQGSLKEYRGNLTINNAQ-ILKNKCAEEVEERKIIPKYPLKGDLKNNLLIKLVDSVL 166 Query: 180 SRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 + + + LP W L++K F S+ ++ IH P K+ E + RL + ELLA Sbjct: 167 TNIDIGENLPIW----LIEKYKFLSLDKSIRTIHKPENQKELE---ESIRRLKFQELLAY 219 Query: 237 QIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 + + +++ + GI V +I ++ +PF T +Q +++I +D ++ M Sbjct: 220 CLKIAFLKEYLETATEGISFIVSEEI-NNLIEVLPFKLTNAQNKVLQEIFKDQEKEKPMN 278 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R+LQGDVGSGKT++ALI++ ++ G Q V++AP ILA QHYE K ++ + +E++ Sbjct: 279 RLLQGDVGSGKTIIALISLFNVIKNGYQGVMLAPTEILAVQHYEEALKLFKDFNLNIELL 338 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 G++ + +++ E++ G+ +IIGTHAL +D +++Y L +VI DEQHRFGV QR K+ Sbjct: 339 IGSIKVSSKKEIKEKLKEGKIDLIIGTHALIEDDVEFYNLGMVITDEQHRFGVMQRSKML 398 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 K + L+M+ATPIPR+L L+ GD+D+S I E P GR+ I T + + V Sbjct: 399 NKGKSVDTLVMSATPIPRSLTLSLYGDLDLSIIDELPPGRQKIDTYYVNDSYRKRVYNFA 458 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-SIAIIHGRMSDIDKESV 533 ++ G++ Y +CP +EEK+E N SV + ++ L E+F IAI+HG+M +K+++ Sbjct: 459 LKEINNGRQVYIVCPLVEEKEELNLNSVEKLYDDLKGEYFKEVEIAILHGKMKGKEKDTI 518 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M FK G K LI+TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG+ S CI Sbjct: 519 MKDFKEGKIKALISTTVIEVGVNVPNATLMVIENAERFGLAQLHQLRGRVGRGKHKSYCI 578 Query: 594 LLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 L+ KN R+ ++K++ DGFL+AEEDLK R GEI G KQ G L+A Sbjct: 579 LIAR---VKNDIIRKRMEIMKSSNDGFLVAEEDLKLRGGGEIFGFKQHGSSNLLLADVIE 635 Query: 652 HDSLLEIARKDAKHILTQDPD 672 LL IA ++K I+ + + Sbjct: 636 DIHLLRIANMESKKIIDSNNE 656 >gi|254674059|emb|CBA09843.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha275] Length = 488 Score = 366 bits (939), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 195/454 (42%), Positives = 282/454 (62%), Gaps = 1/454 (0%) Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280 T PA +RL +DELLA Q+++ L R++ + +G + Q + + +PF+ T +QE Sbjct: 17 TLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAALGGDGTLTQALRQALPFALTDAQEKV 76 Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340 + +I +DM+Q M R+LQGDVGSGKT+VA ++ A+E+G Q +MAP ILA+QH+ Sbjct: 77 VSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSALTAIESGAQVAVMAPTEILAEQHFIK 136 Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400 K++ + I V + G++ + + +A ++A G I +GTHALF D + ++ L L IV Sbjct: 137 FKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADGSVKIAVGTHALFSDGVAFHNLGLTIV 196 Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460 DEQHRFGV QRL L K H L+M+ATPIPRTL ++ D+D+S I E P GR PIKT Sbjct: 197 DEQHRFGVAQRLALKNKGREVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTPIKT 256 Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIA 519 ++ R EV + +G++AYW+CP IEE + ++ E L +I Sbjct: 257 RLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEESETLQLQTATETLEQLQTALPELNIG 316 Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579 ++HGRM +K VM F G +L+ATTVIEVG+DV +A++++IE+AE GLAQLHQL Sbjct: 317 LVHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEVGVDVPNAALMVIEHAERMGLAQLHQL 376 Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639 RGRVGRG S C+LL+ PL + + RL V+ DGF IA +DL R GE LG +QS Sbjct: 377 RGRVGRGAAESVCVLLFAEPLGELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQS 436 Query: 640 GMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 G+P A+ E LLE AR+ A ++ Q+P++ Sbjct: 437 GVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 470 >gi|322806762|emb|CBZ04331.1| ATP-dependent DNA helicase RecG [Clostridium botulinum H04402 065] Length = 679 Score = 366 bits (939), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 246/681 (36%), Positives = 388/681 (56%), Gaps = 44/681 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSS--FIDRHYRPKISEISE 66 +++P++T +GVG K L K C N +DLL Y P FID + + K+ +S+ Sbjct: 3 VYSPITTLKGVGPKTKEQLEK---CMIFN---IMDLLLYFPRDYEFIDNYSKDKL--LSK 54 Query: 67 ERIVTITGYISQHSSFQLQKR-RPYKIL----LNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + I+ + Q + + R R KIL NDG I +F + +KN F G Sbjct: 55 KVIIKV-----QVENIKRDIRTRTGKILTTIIFNDGEKAIVGSWFNQP--YIKNYFKIGE 107 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 + + G +K+ + + + + I N +++V I Y L L +L K++ L Sbjct: 108 EYVLQGSLKEYRGNLTINNAQ-ILKNKCAEEVEERRIIPKYPLKGDLKNNLLIKLVDSVL 166 Query: 180 SRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 + + + LP W L++K F S+ ++ IH P K+ E + RL + ELLA Sbjct: 167 TNIDIGENLPIW----LIEKYKFLSLDKSIRTIHKPENQKELE---ESIRRLKFQELLAY 219 Query: 237 QIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 + + +++ + GI V +I ++ +PF T +Q +++I +D ++ M Sbjct: 220 CLKIAFLKEYLETATEGISFIVSEEI-NNLIEVLPFKLTNAQNKVLQEIFKDQEKEKPMN 278 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R+LQGDVGSGKT++ALI++ ++ G Q V++AP ILA QHYE K ++ + +E++ Sbjct: 279 RLLQGDVGSGKTIIALISLFNVIKNGYQGVMLAPTEILAVQHYEEALKLFKDFNLNIELL 338 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 G++ + +++ E++ G+ +IIGTHAL +D +++Y L +VI DEQHRFGV QR K+ Sbjct: 339 IGSIKVSSKKEIKEKLKEGKIDLIIGTHALIEDDVEFYNLGMVITDEQHRFGVMQRSKML 398 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 K + L+M+ATPIPR+L L+ GD+D+S I E P GR+ I T + + V Sbjct: 399 NKGKSVDTLVMSATPIPRSLTLSLYGDLDLSIIDELPPGRQKIDTYYVNDSYRKRVYNFA 458 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-SIAIIHGRMSDIDKESV 533 ++ G++ Y +CP +EEK+E N SV + ++ L E+F IAI+HG+M +K+++ Sbjct: 459 LKEINNGRQVYIVCPLVEEKEELNLNSVEKLYDDLKGEYFKEVEIAILHGKMKGKEKDTI 518 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M FK G K LI+TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG+ S CI Sbjct: 519 MKDFKEGKIKALISTTVIEVGVNVPNATLMVIENAERFGLAQLHQLRGRVGRGKHKSYCI 578 Query: 594 LLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 L+ KN R+ ++K++ DGFL+AEEDLK R GEI G KQ G L+A Sbjct: 579 LIAR---VKNDIIRKRMEIMKSSNDGFLVAEEDLKLRGGGEIFGFKQHGSSNLLLADVIE 635 Query: 652 HDSLLEIARKDAKHILTQDPD 672 LL IA ++K I+ + + Sbjct: 636 DIHLLRIANMESKKIIDSNNE 656 >gi|332685789|ref|YP_004455563.1| ATP-dependent DNA helicase RecG [Melissococcus plutonius ATCC 35311] gi|332369798|dbj|BAK20754.1| ATP-dependent DNA helicase RecG [Melissococcus plutonius ATCC 35311] Length = 679 Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 232/653 (35%), Positives = 365/653 (55%), Gaps = 43/653 (6%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGY-----ISQHSSFQLQKRRPYKILLNDG 97 DLL Y+P + D + ++ EI ++ VT+ G+ I H ++ + R ++I+ Sbjct: 31 DLLTYYPFRYEDIQEK-ELDEIQDQEKVTLKGFVVSEPIVTHYGYK-KNRLVFRIMQEHA 88 Query: 98 TGEITLLFFYRKTEMLKNVFFEGRKITVTGKI----KKLKNRIIMVHPHY-------IFH 146 I + FF + LK +I + GK K L I+ I+H Sbjct: 89 V--INVSFFNQS--FLKEKVHLSEEIAIYGKWDAKRKSLNGIKILASKDGKTEDFSPIYH 144 Query: 147 NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206 VN + ++ + DL+ + I E L P + LL+K S EA Sbjct: 145 ----VNKKIHQSTLVQLIQTAFDLYGEAIEETL------PNY----LLKKYHLLSRKEAM 190 Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKI 265 +H P + A+ R+ ++E L Q+ + ++KQ K E GI I+ + K ++ Sbjct: 191 FSMHFPNLPSE---NYQAKRRIVFEEFLIFQLQIQGLKKQEKAEQNGISIHYDIKRLKQF 247 Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 +++PF T++Q+ +I +D+ N M R+LQGDVGSGKT+VA I + A V AG Q Sbjct: 248 TKSLPFQLTEAQKKVTNEICRDLLSANHMQRLLQGDVGSGKTIVAAIVLYAVVTAGFQGA 307 Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +M P ILAQQH E +K ++ + ++T + RR+ LE++ +G IIIGTHAL Sbjct: 308 LMVPTEILAQQHMESFQKLYNPLEVRIALLTSSTKLKERREILEQLRNGAIDIIIGTHAL 367 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445 Q+ + +++L LVI DEQHRFGV QR L +K P VL MTATPIPRTL +T+ G++D+ Sbjct: 368 IQEDVVFHQLGLVITDEQHRFGVNQRKILREKGMRPDVLFMTATPIPRTLAITAFGEMDV 427 Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 S I E PAGR+P++T + ++D V+E K L + Y ICP IEE + + ++ +E Sbjct: 428 SSIDEMPAGRQPVETRWVRSTKLDSVLEWAKRELVNNHQTYVICPLIEESEALDAKNALE 487 Query: 506 RFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + L F + ++HG+M + KE +M FKN ++L++TTVIEVG++V +A+++ Sbjct: 488 IYEYLSNFFNDEYKVGLLHGKMKNTQKEEIMQEFKNNQLQILVSTTVIEVGVNVPNATLM 547 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623 +I +A+ FGLAQLHQLRGRVGRG E + CIL+ P ++ R+ ++ T +GF ++E+ Sbjct: 548 LIIDADRFGLAQLHQLRGRVGRGTEAAYCILIADPK-NELGTERMKIMTETTNGFELSEK 606 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676 DL R GE+ G +QSG+P+F++ ++LEIA+++A I Q SV Sbjct: 607 DLTLRGSGEVFGDRQSGVPQFIVGDIVNDFNILEIAQQEAAQIWHQKSWWCSV 659 >gi|86130104|ref|ZP_01048704.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134] gi|85818779|gb|EAQ39938.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134] Length = 700 Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 248/704 (35%), Positives = 374/704 (53%), Gaps = 39/704 (5%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 M P+FL P+ +GVG + L + F DL+ P +ID+ K Sbjct: 1 MNPTFLQ---TPIDYLKGVGPNRADLLRSELGIHT-----FQDLMHLFPHRYIDKTRYYK 52 Query: 61 ISEISEERI-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 ISE+ V I G + + + RR +DG G++ L++F R + +K Sbjct: 53 ISELERSNAEVQIIGKFTSMKMIEGKGRRLVATFRDDG-GQMELVWF-RGHKWIKEGIKM 110 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSV-DLFKKIIVE 177 + GK + M HP + + + ++ VY LS + K++ Sbjct: 111 NTPYVIFGKCNYYNGKFSMPHPEMELLSEHEKSIRSAMQPVYPSTEKLSNRGITNKVVNG 170 Query: 178 ALSRLPV-----LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232 + L + L E + K L+ + EA +H P+ E + A+ RL ++E Sbjct: 171 VMQTLFMEAKNHLFESLSKPLVTELKLMPKREALLNVHFPQSQ---EHLARAQYRLKFEE 227 Query: 233 LLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQ 290 Q+ L K +I G P G I + + +PF T +Q+ +K+I D+ Sbjct: 228 FFYIQLQLAFKNVNHKTKIKGYPFEKVGPIFTEFYNDHLPFELTGAQKRVLKEIRHDLGT 287 Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350 +M R+LQGDVGSGKT+VAL++M A++ G QA +MAP ILA QHY+ + + + Sbjct: 288 NAQMNRLLQGDVGSGKTIVALMSMLMALDNGFQACLMAPTAILAVQHYQGLLELCKELNT 347 Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410 + ++ G+ R+ E++ +G+ I+IGTHAL +D +++ L L ++DEQHRFGV+Q Sbjct: 348 SISLLQGSTKTLERKIIHEQLENGELDILIGTHALLEDKVKFKNLGLAVIDEQHRFGVKQ 407 Query: 411 RLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469 R KL K PHVL+MTATPIPRTL +T GD+D+S I E P GRK IKTV +R D Sbjct: 408 RSKLWHKNEYPPHVLVMTATPIPRTLAMTVYGDLDVSVIDELPPGRKAIKTV----HRYD 463 Query: 470 EVIERLKVV------LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAI 520 RLKV ++ G++ Y + P I+E + +++ +++ + S+ F I+I Sbjct: 464 A--NRLKVFKFIRDEIALGRQVYIVYPLIQESEAMDYKDLMDGYESISREFPMPEYQISI 521 Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580 +HG+M DKE M+ F G ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLR Sbjct: 522 VHGKMKPDDKEIEMNRFIKGETQIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLR 581 Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 GRVGRG E S CIL+ LS +S RL + T DGF IAE DLK R G+I G +QSG Sbjct: 582 GRVGRGAEQSYCILMTSHKLSSDSKVRLETMTRTNDGFEIAEVDLKLRGPGDITGTQQSG 641 Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684 IA + +L++AR A ++ DP Q IR + Sbjct: 642 ALNLKIADIIRDNDILKVARSYAWQLVKDDPKFEKEENQIIRFM 685 >gi|257439260|ref|ZP_05615015.1| ATP-dependent DNA helicase RecG [Faecalibacterium prausnitzii A2-165] gi|257198302|gb|EEU96586.1| ATP-dependent DNA helicase RecG [Faecalibacterium prausnitzii A2-165] Length = 698 Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 228/645 (35%), Positives = 346/645 (53%), Gaps = 30/645 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID--RHYRPKISEISEERI 69 P+ +GVG K + K+ DLL ++P +ID R Y + E + Sbjct: 26 PVRYLKGVGPKTAERFEKL------GIVTLADLLCHYPRRYIDFSRPYSIAEAPPDTECV 79 Query: 70 VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF-----YRKTEMLKNVFFEGRKIT 124 V + RR +I D + + +F +K E+ + +FEG Sbjct: 80 VKAEVFAKPAGRILPGGRRMERITAGDDVSSLEITWFNNPYATQKLELGQEYYFEG---I 136 Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184 VTG + + + MV+P + + EAVY GLS + K I + L + Sbjct: 137 VTGGMLRRQ----MVNPQ--VRTAAQITAAPFEAVYPQTEGLSSTVIAKCIRQLLPHAEL 190 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LP+ + +++L+K S A+A IH P E AR RL Y+ELL Q+ + M+ Sbjct: 191 LPDPLPEEMLKKYRLLSKADAVRAIHCPATE---EEAFAARRRLIYEELLVLQLGIGRMK 247 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 + G P+ + ++PFSPT +Q A+ +IL D+S M R+LQGDVGS Sbjct: 248 NRGSASTGAPM--QRLDPAPFWASLPFSPTGAQRRAVDEILTDLSGSTSMNRLLQGDVGS 305 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKTLVA A+ A + +G QA ++AP ILA QH E + + + V ++TG M A R Sbjct: 306 GKTLVAAAAIWACIRSGYQAALLAPTEILAAQHAENLNRMLAPFGMRVALLTGGMKAAAR 365 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424 R L I +A +++GTHA+ + +++ +L L +VDEQHRFGV+QR L +KA PH+L Sbjct: 366 RTTLAAIRSDEADLVVGTHAILSEGVEFARLGLAVVDEQHRFGVRQRGMLAEKAANPHLL 425 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 +M+ATPIPRTL L GD+DIS + E P GRKP+KT I + ++ L + G++ Sbjct: 426 VMSATPIPRTLGLLIYGDLDISILDELPPGRKPVKTRCITGKKRRDLYGFLDREIGAGRQ 485 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542 Y +CP IE+ + +V + + + + ++HG++ +K +VMD FK G Sbjct: 486 VYIVCPAIEDTPDGGLNAVKSYYEDIAKALLPDRRVGLMHGKLKPKEKAAVMDDFKAGRL 545 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 L++TTVIEVG+DV +A++++IENAE +GL+ LHQLRGRVGRG S C L+ ++ Sbjct: 546 DALVSTTVIEVGVDVPNATVMVIENAERYGLSALHQLRGRVGRGAAESWCFLVSD-NTAE 604 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 + RL L +T DGF +A+ DL+ R G+ G +Q G+P IA Sbjct: 605 SVQKRLKFLCSTSDGFAVAQFDLETRGPGDFFGSRQHGLPTLQIA 649 >gi|317050612|ref|YP_004111728.1| DEAD/DEAH box helicase domain-containing protein [Desulfurispirillum indicum S5] gi|316945696|gb|ADU65172.1| DEAD/DEAH box helicase domain protein [Desulfurispirillum indicum S5] Length = 675 Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 224/673 (33%), Positives = 365/673 (54%), Gaps = 30/673 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 +S + VG + + LSK+ ET DLL++ P + + Y +++ SE V + Sbjct: 3 VSYLKKVGPRRAALLSKL-----GVET-ISDLLWHLPRDY--QQYVRCLAQASEGDQVLL 54 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G I S + + PYK +L GE+ L +F ++ F G +T+ G+++ Sbjct: 55 HGTIV---SCTVPFKPPYKAVLLTDEGEVDLTWFSGARTYIQATFAPGESLTIEGQLRFF 111 Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEK 191 + R + HP + PL Y L LS + + I E + L E + Sbjct: 112 RQRPGITHPKVATATADSDIMPL----YPLTENLSQKMLQDIFTENRAAILDATEEVLPP 167 Query: 192 DLLQKKSFPSIAEAFNIIHNPRK---AKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248 +L+Q+ P + E+ +H P A S +RL ++E+ ++ L+ + Sbjct: 168 ELVQRYHLPGLRESLAALHYPSSRELAALKTGLSRYHKRLIFEEIFLHELGRALVSYAQR 227 Query: 249 KEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 + GI I++ +A ++ R + F+ T+ Q++ +++I QD++ M R+LQGDVGSGKT Sbjct: 228 QRFGIAIDISVDTMADELTRRLGFTLTEGQQAVVQEIQQDLAASQPMNRLLQGDVGSGKT 287 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 VAL AMA G QA+++AP +LAQQHY + VE++ G++ + + + Sbjct: 288 AVALYAMAGVTTKGYQALLLAPTEVLAQQHYTLFARILDGL-CQVELLCGSLSKKQKDQR 346 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 I G A IIIGTHAL Q+ I +++L L ++DEQHRFGV+QR + + L M+ Sbjct: 347 RAAIHEGAADIIIGTHALLQEDISFHRLGLSVIDEQHRFGVEQRAVFARNNPGVNQLYMS 406 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL LT D+ +S + P GR+P++T+ + R ++ + ++ VL +G + Y Sbjct: 407 ATPIPRTLALTMYADMALSSLKTLPVGRQPVQTLFLGSARQKQLHQEIEQVLQQGLQVYI 466 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIA-----IIHGRMSDIDKESVMDSFKNGTC 542 + P IEE ++ + +E + ++E + +A ++HGRM K+ VM+ F G Sbjct: 467 VAPLIEESEKVD----LENASRIYEQYRVQLAPHGVDLLHGRMGAEAKQQVMERFGRGET 522 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 ++L++TTVIEVG+D AS+++I + E FGL+QLHQLRGRVGRG CI + + Sbjct: 523 QVLVSTTVIEVGVDYPRASLMVIYHPERFGLSQLHQLRGRVGRGSHPGRCIFFAPGQIGR 582 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662 S RL VL ++ DGF IA++DL+ R G++ G++Q G+P FL+A P E AR + Sbjct: 583 ESRERLQVLVDSTDGFYIAQKDLEIRGPGQLFGMRQWGIPSFLVADPIRDVKAWEFARDE 642 Query: 663 AKHILTQDPDLTS 675 + IL +DP L + Sbjct: 643 VRAILARDPALNA 655 >gi|168210637|ref|ZP_02636262.1| ATP-dependent DNA helicase RecG [Clostridium perfringens B str. ATCC 3626] gi|170711318|gb|EDT23500.1| ATP-dependent DNA helicase RecG [Clostridium perfringens B str. ATCC 3626] Length = 690 Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 246/678 (36%), Positives = 378/678 (55%), Gaps = 46/678 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 ++ + +GVG K L+K+ +DLL Y P R Y +IS Sbjct: 16 IYDDIGLVKGVGPKLKERLNKV------GIFTVLDLLLYFP-----RDYEFLNDDIS--- 61 Query: 69 IVTITGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEML---------KNVF 117 + G IS + K + Y I +G T+ F Y +++ K F Sbjct: 62 ---LNGDISDEKAILKCKVQSYGSSIRTRNGKTLTTINFTYNNLKVIGKWFNQPYIKRNF 118 Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK KK+ N + +++P ++ N I +Y+L GL+ + K+I E Sbjct: 119 ILGNEYNLMGKFKKVNNTLEVINP---LIPCKEANKSEILPIYTLKNGLTNKILVKLINE 175 Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237 L + ++ E + ++++K S+ +A IH P + + A RL + EL Sbjct: 176 ILKNM-IIKENLPDEIVKKYKLISLDKAIRSIHFPAGRGELQ---SAINRLKFQELFTYS 231 Query: 238 IALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 + +++M+ KKE GI + + + + ++P++ T +Q +++IL D + M R Sbjct: 232 LKIIMMKAHIKKENSGISFKM-SPLLKDLKDSLPYTLTNAQSRTLREILMDQKRNIAMNR 290 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 ++QGDVGSGKTLVALI+M G Q V+MAP ILA QHY KKY + +E++T Sbjct: 291 LVQGDVGSGKTLVALISMFNVYMNGYQTVLMAPTEILANQHYAEAKKYLDKFGVDIELLT 350 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G+ + +++ E+IA G+ ++IGTHAL QD ++ L LV+ DEQHRFGV+QR +L Sbjct: 351 GSTKEKEKKRIKEKIASGKEIMLIGTHALIQDDVELNNLGLVVTDEQHRFGVEQRSRLIN 410 Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERL 475 K VL+MTATPIPRTL L D+DIS I E P GRKPI T+++ +N R+ L Sbjct: 411 KNKRADVLVMTATPIPRTLSLYLYSDLDISIIDELPPGRKPIDTMLVDMNQRMKAYNFAL 470 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESV 533 K V +G++ Y + P IEE ++ N SV + + L I I+HG+M+ DK+ + Sbjct: 471 KEV-EKGRQFYIVSPLIEENEKLNLNSVEKIYEELKNGIFKDVRIEILHGKMAGKDKDKI 529 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 +++FKNG K +I+TTVIEVG++V +++++IIENAE FGLAQLHQLRGRVGRGE S CI Sbjct: 530 INTFKNGEIKGIISTTVIEVGVNVPNSTMMIIENAERFGLAQLHQLRGRVGRGEHKSYCI 589 Query: 594 LLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 L+ + +KN T R+ ++ + DGF IAEEDLK R GE+ G++Q G F++A Sbjct: 590 LIAN---TKNDITRRRMEIMTESSDGFYIAEEDLKLRGAGEVFGMRQHGDEGFILANVVD 646 Query: 652 HDSLLEIARKDAKHILTQ 669 ++L+ A +AK I+ Sbjct: 647 DINILKCANHEAKLIVNN 664 >gi|153809138|ref|ZP_01961806.1| hypothetical protein BACCAC_03448 [Bacteroides caccae ATCC 43185] gi|149128471|gb|EDM19690.1| hypothetical protein BACCAC_03448 [Bacteroides caccae ATCC 43185] Length = 698 Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 237/676 (35%), Positives = 365/676 (53%), Gaps = 33/676 (4%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + + L+K + + + DL++Y P ++DR I EI + + G I Sbjct: 14 GVGPQKAAVLNKELGIYSLH-----DLIYYFPYKYVDRSRIYYIHEIDGNMPYIQLKGEI 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 + ++R +DGTG + L++F +L I + GK RI Sbjct: 69 LGFETIGEGRQRRLTAHFSDGTGVVDLVWFQGIKYILGKYKLHEEYI-IFGKPTVFNGRI 127 Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL------PEWIE 190 + HP + ++ ++ Y+ + +E + +L PE + Sbjct: 128 NLAHPDVDKTDDLKLSSVGLQPYYNTTEKMKRSFLNSHAIEKMMATVILQIQEPLPETLS 187 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 LL + + EA IH P + A+ RL ++EL Q+ +L K ++ Sbjct: 188 PKLLSEHHLMPLTEALRNIHFPTNP---DLLRRAQYRLKFEELFYVQLNILRYAKDRQRR 244 Query: 251 IGIPINVEGKIAQKI--------LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 G I +K+ +N+PF T +Q+ +K+I D+ +M R+LQGDV Sbjct: 245 ------YRGYIFEKVGDVFNTFYTKNLPFQLTGAQKRVLKEIRNDVGSGRQMNRLLQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVAL++M A++ G QA +MAP ILA QHYE IK+ I VE++TG++ Sbjct: 299 GSGKTLVALMSMLLALDNGYQACMMAPTEILANQHYETIKELLFGMDIRVELLTGSIKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAP 421 R L + G I+IGTHA+ +D++ + L V++DEQHRFGV QR +L K P Sbjct: 359 RREAILTGLLTGDVKILIGTHAVIEDTVNFSSLGFVVIDEQHRFGVAQRARLWSKNIQPP 418 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 HVL+MTATPIPRTL +T GD+D+S I E P GRKPI TV NR + + ++ + E Sbjct: 419 HVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATVHQFDNRRESLYRSVRKQIEE 478 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNG 540 G++ Y + P I+E ++ + +++ E + + E F ++ +HG+M +K+ M F +G Sbjct: 479 GRQVYIVYPLIKESEKIDLKNLEEGYQHILEEFPECTVCKVHGKMKAAEKDEQMQLFISG 538 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S CIL+ + L Sbjct: 539 KAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCILVTNYKL 598 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIA 659 ++++ RL ++ T DGF IAE DLK R G++ G +QSG+ L IA LL+ Sbjct: 599 TEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGVAFDLKIADIARDGQLLQYV 658 Query: 660 RKDAKHILTQDPDLTS 675 R A+ I+ DP S Sbjct: 659 RAIAEDIVEHDPGAQS 674 >gi|226949848|ref|YP_002804939.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A2 str. Kyoto] gi|226841536|gb|ACO84202.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A2 str. Kyoto] Length = 679 Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 241/676 (35%), Positives = 384/676 (56%), Gaps = 34/676 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSS--FIDRHYRPKISEISE 66 +++P++T +GVG K L K C N +DLL Y P FID + + K+ +S+ Sbjct: 3 VYSPITTLKGVGPKTKEQLEK---CMIFN---IMDLLLYFPRDYEFIDNYSKDKL--LSK 54 Query: 67 ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 + I+ + + + I+ NDG I +F + +KN F G + + Sbjct: 55 KVIIKVRVENIKRDIRTRTGKILTTIIFNDGEKAIVGSWFNQP--YIKNYFKIGEEYVLQ 112 Query: 127 GKIKKLKNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184 G +K+ + + + + I N +++V I Y L L +L K++ L+ + + Sbjct: 113 GSLKEYRGNLTINNAQ-ILKNKCAEEVEERKIIPKYPLKGDLKNNLLIKLVDSVLTNIDI 171 Query: 185 ---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 LP W L++K F S+ ++ IH P K+ E + RL + ELLA + + Sbjct: 172 GENLPIW----LIEKYKFLSLDKSIRTIHKPENQKELE---ESIRRLKFQELLAYCLKIA 224 Query: 242 LMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 +++ + GI V +I ++ +PF T +Q +++I +D ++ M R+LQG Sbjct: 225 FLKEYLETATEGISFIVSEEI-NNLIEVLPFKLTNAQNKVLQEIFKDQEKEKPMNRLLQG 283 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT++ALI++ ++ G Q V++AP ILA QHYE K ++ + +E++ G++ Sbjct: 284 DVGSGKTIIALISLFNVIKNGYQGVMLAPTEILAVQHYEEALKLFKDFNLNIELLIGSIK 343 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 + +++ E++ G+ +IIGTHAL +D +++Y L +VI DEQHRFGV QR K+ K + Sbjct: 344 VSSKKEIKEKLKEGKIDLIIGTHALIEDDVEFYNLGMVITDEQHRFGVMQRSKMLNKGKS 403 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 L+M+ATPIPR+L L+ GD+D+S I E P GR+ I T + + V ++ Sbjct: 404 VDTLVMSATPIPRSLTLSLYGDLDLSIIDELPPGRQKIDTYYVNDSYRKRVYNFALKEIN 463 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-SIAIIHGRMSDIDKESVMDSFK 538 G++ Y +CP +EEK+E N SV + ++ L E+F IAI+HG+M +K+++M FK Sbjct: 464 NGRQVYIVCPLVEEKEELNLNSVEKLYDDLKGEYFKEVEIAILHGKMKGKEKDTIMKDFK 523 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G K LI+TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG+ S CIL+ Sbjct: 524 EGKIKALISTTVIEVGVNVPNATLMVIENAERFGLAQLHQLRGRVGRGKHKSYCILIAR- 582 Query: 599 PLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 KN R+ ++K++ DGFL+AEEDLK R GEI G KQ G L+A LL Sbjct: 583 --VKNDIIRKRMEIMKSSNDGFLVAEEDLKLRGGGEIFGFKQHGSSNLLLADVIEDIHLL 640 Query: 657 EIARKDAKHILTQDPD 672 IA ++K I+ + + Sbjct: 641 RIANMESKKIIDSNNE 656 >gi|320107807|ref|YP_004183397.1| ATP-dependent DNA helicase RecG [Terriglobus saanensis SP1PR4] gi|319926328|gb|ADV83403.1| ATP-dependent DNA helicase RecG [Terriglobus saanensis SP1PR4] Length = 747 Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 235/722 (32%), Positives = 377/722 (52%), Gaps = 70/722 (9%) Query: 43 DLLFYHPSSFIDR-HYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101 DLL++ P + DR H RP I+E+ + ++ G + + +++ + G + Sbjct: 31 DLLYHLPFRYEDRLHPRP-IAELKAGEMASVIGEVRGSVLLHTRSMPLFEMTVAQGVDTV 89 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN---RIIMVHPHY--IFHNSQDVNFPLI 156 ++F + LK+ F G+ + + GK++ ++ + M+ P + + ++ F ++ Sbjct: 90 KAMWF--RGTYLKDKFKLGQTVALYGKMEPSRSNAGKFKMLQPQFEILPEPGEEGGFEML 147 Query: 157 E-----AVYSLPTG-------LSVDLFKKII---VEALSRLPVLPEWIEKDLLQKKSFPS 201 E VY G L ++++ +E L R L E + L +K Sbjct: 148 EMGRIVPVYETLGGTTAWGAKLGSKWMRRVVWDVLEELGREGTLDEPLPGALRKKLGLMD 207 Query: 202 IAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257 EA +H P +PA RL ++EL ++ L L RK+ ++ G+P Sbjct: 208 RLEALRRVHFPEAGTSMVDLQSSATPAHRRLIFEELFYLELGLELKRKRMRERTGVPFTT 267 Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317 K+ + I R +PF PT +Q+ + +I+ DM + M R+LQGDVGSGKT+VA+ A A Sbjct: 268 GTKVREAIKRVLPFHPTPAQKRVLGEIVADMQKPQPMRRLLQGDVGSGKTIVAMQAAIVA 327 Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377 +E G QA +MAP ILA QHY KK ++ V ++TG++ +R +I G++ Sbjct: 328 IENGYQAALMAPTEILATQHYLSAKKLLGDS-YTVTLLTGSLDAQQKRLNRRKIFAGESE 386 Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPRTL 435 +++GT AL Q+ + + L LVIVDEQHRFGV+QR L +K P VL+MTATPIPRTL Sbjct: 387 LVVGTQALIQEKVDFANLGLVIVDEQHRFGVRQRFTLMKKPGTGDPDVLVMTATPIPRTL 446 Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495 +T GD+D+S + E P GR PI T R +EV + + G++AY + P IE Sbjct: 447 AMTVYGDLDVSVLDELPPGRTPIVTRRTGEERSEEVWAFVLKQVKMGRQAYIVYPMIEGA 506 Query: 496 KES----NF----------------------------RSVVERFNSLHEHFTSS------ 517 KE +F ++V+ +++H + Sbjct: 507 KEDQPELDFAVDPPAEVEEPKKRAAKKATKPKKLFSEKTVMRSATEMYDHLRAGALRDIR 566 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 + ++HG++S +KE M F+ G +L+ATTVIEVG+DV +AS+++IE+AE FG+AQ+H Sbjct: 567 LGLLHGKLSADEKEVTMRRFQRGEIDVLVATTVIEVGVDVPNASVMVIEHAERFGMAQMH 626 Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637 QLRGRVGRG S CIL+ +S + R+ + T++GF +AE DL QR GE G + Sbjct: 627 QLRGRVGRGAAKSYCILVTGARVSPQAEERVGAMVRTQNGFELAELDLAQRGPGEFFGTR 686 Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFI 697 Q+GMP F +A LLE+A+K+A + + D+ V + +R L +Q+ + + Sbjct: 687 QAGMPDFRVASLLRDRDLLEMAKKEAARFIERPYDVPEVEREMVRSQLK-HQWQRRYGLV 745 Query: 698 RA 699 A Sbjct: 746 EA 747 >gi|91786378|ref|YP_547330.1| ATP-dependent DNA helicase RecG [Polaromonas sp. JS666] gi|91695603|gb|ABE42432.1| ATP-dependent DNA helicase RecG [Polaromonas sp. JS666] Length = 731 Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 239/681 (35%), Positives = 353/681 (51%), Gaps = 60/681 (8%) Query: 40 RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99 R IDL + P + D ++ + + +V I ++ HS + RR ++ ++DG+ Sbjct: 48 RDIDLALHLPLRYEDETRIVQLRDARDGDMVQIEAQVT-HSEVTFRPRRQLRVTVDDGSD 106 Query: 100 EITLLF--FYRKTEMLKNVFFEGRKITVTGKIKKLK-----NRIIMVHPHYIFHNSQ--D 150 L F FY + +V G ++ V G+I+ R MVHP + + Sbjct: 107 TCVLRFLNFYPSHQKTLSV---GARVRVRGEIRGGSFAGGFGRE-MVHPSFKLAGGELPG 162 Query: 151 VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQK---KSFPSIAEAFN 207 P+ V SLP +K ++ L+R L E I + L K + + EA Sbjct: 163 ALTPVYPTVASLPQAY----LRKAVLSGLARAD-LSETIPQQFLNKNLPQPLSDLREALQ 217 Query: 208 IIHNPRK----AKDFEWTSPARERLAYDEL---------------------LAGQIALLL 242 +H+P + + + PA +RL +EL L GQ Sbjct: 218 FLHHPTPDVMLSTLEDRSHPAWQRLKAEELLAQQLSQLQARRGRAAMRAPALGGQS---- 273 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 MR + + +++L +PF T +Q+ +I D+ + M R+LQGDV Sbjct: 274 MRNPAADDGASLQGPHCTLHEQLLERLPFRLTPAQQRVCAEIDADLQKSIPMHRLLQGDV 333 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKT+VA +A A + AG Q +MAP ILA+QH+ + + + I +TG+ Sbjct: 334 GSGKTVVAALATARCMGAGWQCALMAPTEILAEQHFRKLIGWLEPLGIRTAWLTGSQKAK 393 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL----KLTQKA 418 RR+AL I G+A ++IGTHA+ QD +++ L L I+DEQHRFGV QRL K+T+ Sbjct: 394 ERREALALIKSGEAGLVIGTHAVIQDKVEFKNLALAIIDEQHRFGVAQRLALRSKMTEGG 453 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH+L+MTATPIPRTL ++ D+D+S I E P GR PI T ++ R DEVIER++ Sbjct: 454 QEPHLLMMTATPIPRTLAMSYYADLDVSTIDELPPGRTPIVTKVVNDARRDEVIERIRGQ 513 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 L EG++ YW+CP IEE + + + + +L + ++H RM +K++VM F Sbjct: 514 LLEGRQVYWVCPLIEESESIDLINATQTHEALSAALPGVGVGLLHSRMPVAEKKAVMSLF 573 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 G +L++TTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG S+C+LLY Sbjct: 574 TEGVMGVLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYS 633 Query: 598 ----PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 P L + + RL + T DGF IA DL+ R GE LG +QSG P A Sbjct: 634 TGDAPRLGETARERLKAMVQTHDGFEIARRDLEIRGPGEFLGARQSGAPLLRFADLATDT 693 Query: 654 SLLEIARKDAKHILTQDPDLT 674 LL AR A +L Q L Sbjct: 694 QLLAWARGVAPVMLDQHAGLA 714 >gi|328885306|emb|CCA58545.1| ATP-dependent DNA helicase RecG [Streptomyces venezuelae ATCC 10712] Length = 730 Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 233/714 (32%), Positives = 376/714 (52%), Gaps = 73/714 (10%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS--SFQLQKRRPYK--ILLNDGT 98 DLL ++P + +R ++++ + VT+ ++ +F K R + + + DG+ Sbjct: 34 DLLHHYPRRYAERGELTTLADLPLDEHVTVVARVADARVLTFNGSKGRGQRLEVTITDGS 93 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF-----HNSQDVN- 152 G + L+FF + + G + GK+ R+ + HP Y + DV Sbjct: 94 GRLQLVFFGKGVHKPHHDLLPGTRAMFAGKVSLFNRRLQLAHPSYELLRGDGEEAVDVWA 153 Query: 153 ------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206 +P + S +VD VEAL LP L + + + +A Sbjct: 154 GALIPIYPATAKLESWKIAKAVDAVLPSAVEALDPLP-------DALREGRGLAQLPDAL 206 Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266 +IH PR D + ARERL +DE Q+AL R + +P IL Sbjct: 207 RLIHRPRTKADI---ATARERLKWDEAFVLQVALARRRH---ADTQLPAVARRPAPDGIL 260 Query: 267 ----RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 +PF+ T Q ++I D++ ++ M R+LQG+VGSGKT+VAL AM A V++GG Sbjct: 261 DAFDAKLPFTLTDGQRKVSQEIFDDLATEHPMHRLLQGEVGSGKTMVALRAMLAVVDSGG 320 Query: 323 QAVIMAPIGILAQQHYEFIKKY-------------TQNTQIIVEIITGNMPQAHRRKALE 369 QA ++AP +LAQQH+ + + + T+++ ++TG+M A RR+AL Sbjct: 321 QAAMLAPTEVLAQQHHRSVTEMMGELAEGGMLGGADRATKVV--LLTGSMGTAARRQALL 378 Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTA 428 + G+A ++IGTHAL +D ++++ L LV+VDEQHRFGV+QR L K PH+L+MTA Sbjct: 379 DLVTGEAGVVIGTHALIEDKVKFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTA 438 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKK 484 TPIPRT+ +T GD++ S + + PAGR PI + ++P + ER++ + +G + Sbjct: 439 TPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAADKPHFLARAWERVREEVGKGHQ 498 Query: 485 AYWICPQI--EEKKESNFRSVVERFN---------SLHEHFTSS------IAIIHGRMSD 527 AY +CP+I EE ++ ++ E + E + IA++HGRM Sbjct: 499 AYVVCPRIGDEEDQKKKAKASAEDEAEKRPPLAVLDVAEKLRTGPLAGLRIAVLHGRMHP 558 Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587 DK+ VM F G +L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQLRGRVGRG Sbjct: 559 DDKDDVMRRFAAGELDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGS 618 Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 C+L+ P + + RL+ + T DGF ++ DL+QR+EG++LG QSG+ L Sbjct: 619 APGLCLLVSEMPEATPARQRLAAVAATLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRV 678 Query: 648 QPELHD-SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 + D ++ AR++A ++ DPDLT Q++R L + +++ G Sbjct: 679 LAVIDDEEVIAAAREEATALVLADPDLTG--HQALRTALDALLDKDREEYLEKG 730 >gi|253566377|ref|ZP_04843831.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_2_5] gi|251945481|gb|EES85919.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_2_5] Length = 698 Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 233/666 (34%), Positives = 365/666 (54%), Gaps = 21/666 (3%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + + L+K + + + DLL+Y P ++DR I EI + + G I Sbjct: 14 GVGPQKAAVLNKELEIYSLH-----DLLYYFPYKYVDRSRIYYIHEIDGNMPYIQLKGKI 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 +F ++R +DGTG + L++F + + + N + + V GK RI Sbjct: 69 LGFETFGEGRQRRLLAHFSDGTGVVDLVWF-QGIKYVTNKYKLHEEYIVFGKPTVFNGRI 127 Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190 + HP ++ ++ Y+ + +E + + L E + Sbjct: 128 NVAHPDIDSPADLKLSSMGLQPYYNTTEKMKRSFLNSHAIEKMMATVIGQIQEPLSETLS 187 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 L+ S+ +A IH P E A+ RL ++EL Q+ +L K +++ Sbjct: 188 PKLIADHHLMSLTDALRNIHFPSNP---ELLRKAQYRLKFEELFYVQLNILRYAKDRQRK 244 Query: 251 I-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 G G+ +N+PF T +Q+ +++I QD+ +M R+LQGDVGSGKTL Sbjct: 245 YRGYVFETVGETFNTFYSKNLPFELTGAQKRVLREIRQDVGCGKQMNRLLQGDVGSGKTL 304 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VAL++M A++ G QA +MAP ILA QHY+ I++ + VE++TG++ R L Sbjct: 305 VALMSMLMALDNGFQACMMAPTEILANQHYDTIRELLFGMDVRVELLTGSVKGKKREAIL 364 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMT 427 + G HI+IGTHA+ +D++ + L L ++DEQHRFGV QR +L K+ PHVL+MT Sbjct: 365 AGLLTGDVHILIGTHAVIEDTVNFASLGLAVIDEQHRFGVAQRARLWSKSVQPPHVLVMT 424 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T GD+D+S I E P GRKPI T+ NR + + ++ + EG++ Y Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATIHQFDNRRESLYRSVRKQIEEGRQVYI 484 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 + P I+E ++ + +++ E + + E F + +HG+M +K++ M F +G ++++ Sbjct: 485 VYPLIKESEKIDLKNLEEGYLHICEEFPDCKVCKVHGKMKPAEKDAQMQLFISGDAQIMV 544 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S CIL+ L++ + Sbjct: 545 ATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCILVTTYKLTEETRK 604 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKH 665 RL ++ T DGF IAE DLK R G++ G +QSG+ L IA LL+ R A+ Sbjct: 605 RLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLLQYVRTIAEE 664 Query: 666 ILTQDP 671 I DP Sbjct: 665 ITDADP 670 >gi|229824775|ref|ZP_04450844.1| hypothetical protein GCWU000182_00124 [Abiotrophia defectiva ATCC 49176] gi|229791104|gb|EEP27218.1| hypothetical protein GCWU000182_00124 [Abiotrophia defectiva ATCC 49176] Length = 681 Score = 365 bits (937), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 240/654 (36%), Positives = 372/654 (56%), Gaps = 52/654 (7%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER--IV 70 ++ +G+G K + L+K+ G + D++ Y P ++ D++ KI+ IS + + Sbjct: 7 ITAIKGIGNKTAALLNKL---GIYTKR---DIIKYFPRNY-DKY--EKITPISSLKNGMT 57 Query: 71 TITGYISQHSSF--QLQKRRPYKILLNDGTGEITLLFF---YRKTEMLKNV--FFEGRKI 123 + I + Q+ K+ + DG+G+I L +F + KT++ K V F GR + Sbjct: 58 AVISAIPASAPILKQMGKKSILICEVTDGSGKIELNWFNMPFMKTKLSKGVHNIFRGR-V 116 Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKK----IIVEAL 179 + GK I +V P + +++ +Y L G++ +L +K ++VE + Sbjct: 117 SRNGKF------IRIVQPEILTEAEYRRKTEVLQPIYRLTKGVTSNLLRKSIKEVLVEVI 170 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 S + LP+ I+KD S S+ +A IH P K ++ AR RL +DE A Sbjct: 171 SGIDYLPQNIKKD----NSLISLKDALQEIHFP---KSYDTLIEARRRLVFDEFFL--FA 221 Query: 240 LLLMR-KQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 L + R KQ ++E G VE + ++PFS T +Q+ ++I D++ RM R+ Sbjct: 222 LSIDRLKQGREENGSSYVVEKSSTTVDFISSLPFSLTNAQQKVWEEIENDLTSGFRMNRL 281 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 +QGDVGSGKTL+A++A + G Q+ +M P +LA+QH+E + I V ++TG Sbjct: 282 VQGDVGSGKTLLAILACLLMTKNGYQSSVMVPTEVLARQHFESFSTMLEQYGIRVVLLTG 341 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 ++ R++ L RI + +A IIIGTHAL Q+ + Y KL LVI DEQHRFGV+QR KL K Sbjct: 342 SVKGRERKETLSRIENHEADIIIGTHALIQEKVVYDKLALVITDEQHRFGVKQREKLADK 401 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 PH+++M+ATPIPRTL + GD+DIS + E PA R PIK ++ D + K Sbjct: 402 GIEPHIMVMSATPIPRTLAVILYGDLDISIVNELPADRLPIKNCVVD---EDYRMTAYKF 458 Query: 478 VLSE---GKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530 +LSE G +AY ICP +E+ +E S+ S E SL + + I +HG+M + +K Sbjct: 459 ILSEVNKGHQAYIICPMVEKSEENDELSDVISYTEELTSLIGN-KAKIKYLHGKMKNDEK 517 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 +M+ F +G +LI+TTV+EVG++V +A++++IENA+ FGLA LHQLRGR+GRG S Sbjct: 518 NQIMEEFSDGRIDILISTTVVEVGVNVPNATVMMIENADRFGLASLHQLRGRIGRGNAQS 577 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644 CI + SK + RL++L + DGF IAEED+K R G++ GI+QSG F Sbjct: 578 YCIFM-SGNTSKEAMERLNILNKSNDGFKIAEEDMKLRGPGDVFGIRQSGEMAF 630 >gi|295133061|ref|YP_003583737.1| ATP-dependent DNA helicase RecG [Zunongwangia profunda SM-A87] gi|294981076|gb|ADF51541.1| ATP-dependent DNA helicase RecG [Zunongwangia profunda SM-A87] Length = 528 Score = 365 bits (937), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 211/487 (43%), Positives = 314/487 (64%), Gaps = 9/487 (1%) Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEG 259 S AEA IH P+ A E + A+ RL ++EL Q+ LLL + K++I G G Sbjct: 29 SKAEALFNIHFPKNA---ELLAKAQFRLKFEELFYIQLQLLLKNQLRKQKIKGFVFGEIG 85 Query: 260 KIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318 + +N +PF T +Q+ IK+I D+ +M R+LQGDVGSGKT+VAL++M A+ Sbjct: 86 EYFSGFYKNHLPFDLTGAQKRVIKEIRADLGTGAQMNRLLQGDVGSGKTIVALMSMLIAI 145 Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378 + QA +MAP ILA QHY+ + + + ++ + ++TG+ +AHRR+ E++ +G+ I Sbjct: 146 DNNFQACLMAPTEILAIQHYQGLVELCEKMELSIYLLTGSSKKAHRRELHEKLENGEIDI 205 Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVLLMTATPIPRTLVL 437 +IGTHAL +D ++++ L L I+DEQHRFGV QR KL +K PH+L+MTATPIPRTL + Sbjct: 206 LIGTHALLEDKVKFHNLGLAIIDEQHRFGVAQRAKLWRKNKIPPHILVMTATPIPRTLAM 265 Query: 438 TSLGDIDISKITEKPAGRKPIKTV-IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496 + GD+DIS I E P GRKPI+TV NR+ +V LK + +G++ Y + P I+E + Sbjct: 266 SLYGDLDISVIDELPPGRKPIRTVHRFDSNRL-KVFRFLKEEIDKGRQVYVVYPLIQESE 324 Query: 497 ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555 + +++ +++ + S+ F I+I+HG+M DK+ M F G ++++ATTVIEVG+ Sbjct: 325 KMDYKDLMDGYESIAREFPDFQISIVHGQMKPEDKDYEMQRFAEGKTEIMVATTVIEVGV 384 Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615 +V +AS+++IE+AE FGL+QLHQLRGRVGRG E S CIL+ LS +S TRL + T Sbjct: 385 NVPNASVMVIESAERFGLSQLHQLRGRVGRGAEQSYCILMTGHKLSNDSKTRLETMTATN 444 Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 DGF IAE DLK R G+I+G +QSG+ IA + LL+ AR A+ +L +DP L Sbjct: 445 DGFQIAEVDLKLRGPGDIMGTQQSGVLNLKIADIVKDNDLLKTARHIAQKVLKEDPKLAL 504 Query: 676 VRGQSIR 682 + + +R Sbjct: 505 EKNKVLR 511 >gi|300854456|ref|YP_003779440.1| ATP-dependent DNA helicase [Clostridium ljungdahlii DSM 13528] gi|300434571|gb|ADK14338.1| ATP-dependent DNA helicase [Clostridium ljungdahlii DSM 13528] Length = 679 Score = 365 bits (937), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 214/553 (38%), Positives = 334/553 (60%), Gaps = 21/553 (3%) Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184 + GKI+ + ++ +P + NS I +Y L +G++ + F K+I L+++ + Sbjct: 112 IAGKIQHYRGNSVITNPKVVNINSNSKIEEKILPIYPLKSGITNNTFIKLISYVLTKVSI 171 Query: 185 ---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 LP+WI + K S+ +A IIHNP +F ++RL + EL + +L Sbjct: 172 DENLPKWI----ITKYKLCSLDKAIRIIHNPV---NFRELREGKKRLKFQELFTYSLKIL 224 Query: 242 LMRKQF-KKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 ++++ F K + G+ + ++ + L+N +P+ TK+Q I++IL D ++ M R+LQ Sbjct: 225 MLKEYFGKNKKGVAFKIAPELIE--LKNKLPYKLTKAQNKVIREILIDEKREVPMNRLLQ 282 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT+VALI++ V+ G QAV+MAP ILAQQHYE K + + +E++ G++ Sbjct: 283 GDVGSGKTVVALISIFNVVKNGYQAVLMAPTEILAQQHYEEAMKLLEGFDVEIELLCGSV 342 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 ++ + E++ G+ IIIGTHAL +D++++ + +V+ DEQHRFGV QR KL K Sbjct: 343 TPKNKDEIKEKLKMGEIDIIIGTHALIEDNVEFKNIGIVVTDEQHRFGVIQRSKLVNKGD 402 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 L+MTATPIPRTL L GD+++S I E P GR+ I T N D+V + + Sbjct: 403 HVDTLIMTATPIPRTLSLYLYGDLNVSTIDELPPGRQKIDTYYRDKNSRDKVYKFALEEI 462 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA--IIHGRMSDIDKESVMDSF 537 G++ Y +CP +EE +E + SV + + L E + +I I++G+M KE M+ F Sbjct: 463 KRGRQVYVVCPLVEENEELDLSSVEDIYEELKEKYFKNIQIDILYGKMQPKLKEEKMNKF 522 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 KNG K++I+TTVIEVGI+V +A+++IIENAE FGLAQLHQLRGRVGRG S CIL+ Sbjct: 523 KNGEIKVIISTTVIEVGINVPNATVMIIENAERFGLAQLHQLRGRVGRGSYKSYCILIAD 582 Query: 598 PPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 KN R+ +++++ DGF IAE+DLK R GEI G +Q G + + + ++ Sbjct: 583 I---KNDIIRKRMEIMRSSNDGFFIAEQDLKIRGSGEIFGFRQHGEDELVFSNLVEDINI 639 Query: 656 LEIARKDAKHILT 668 L+ A ++AK +L Sbjct: 640 LKEANREAKRLLA 652 >gi|116490527|ref|YP_810071.1| ATP-dependent DNA helicase RecG [Oenococcus oeni PSU-1] gi|116091252|gb|ABJ56406.1| ATP-dependent DNA helicase RecG [Oenococcus oeni PSU-1] Length = 676 Score = 365 bits (937), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 237/697 (34%), Positives = 386/697 (55%), Gaps = 38/697 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 LF ++ GVG+K + L + I+N DLL Y+P + D R S+ + Sbjct: 3 LFDSITELSGVGQKRAEILKQLGILNIE--------DLLTYYPFRYDDLESRLP-SQTDD 53 Query: 67 ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122 + VT G +S S F +K R +++L+ G I++ FF LK G++ Sbjct: 54 GQKVTFKGMVSSQPTISRFGYKKSRIAFRLLI--GHDNISVSFF--NQPWLKEQIEIGKE 109 Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182 + + G + + I H D + A+Y + +++I A ++ Sbjct: 110 MAIFGTYDAVHEAL---KGQRIIHAENDS----LAAIYPSNQAIHQKTIQQLIENAYAKY 162 Query: 183 P-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 + + I + L+ S + + +H P A++ + AR A++E Q+ L Sbjct: 163 ADQINDIIPRRLMLAYRLLSRKKQIHDMHFPDSAENAKL---ARRSAAFEEFFIFQMRLQ 219 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 LMR K G I +I + +P+S T +Q+ I++IL D+ + M R+LQGD Sbjct: 220 LMRISAGKNRGREIEYNSEILNDFIAKLPYSLTDAQKKVIQEILLDLKRPIHMNRLLQGD 279 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT--QIIVEIITGNM 359 VGSGKT+VA IAM A AG QA IM P ILAQQH + Q+ + +E++T + Sbjct: 280 VGSGKTVVAAIAMLACYSAGLQAAIMVPTEILAQQHAINLSNLYQSAGLNLRIELLTSGL 339 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A RR+ L + G+ I++GTHAL Q + +Y L L ++DEQHRFGV+QR +L ++ Sbjct: 340 KAAARRQILADLESGEIDIVVGTHALIQADVHFYNLGLAVIDEQHRFGVKQRARLREQGQ 399 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 P +L MTATPIPRTL +T+ G++D+S I + P GR+PI T + N+ D V + +K L Sbjct: 400 NPDILAMTATPIPRTLAITAYGEMDVSTIDQLPNGRRPIITKWVKSNQFDNVFDWVKTQL 459 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538 + G + Y + P IEE + + ++ V ++ L E I ++HGR+++ +K+ V++ F Sbjct: 460 AAGAQVYVVTPLIEESETLDVQNAVLIYDRLKEELKPYRIGLLHGRLTNDEKQQVINDFS 519 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 ++L+ TTVIEVG+D+ +A+I++I +A+ FG+AQLHQLRGRVGRG++ S IL+ P Sbjct: 520 TNRVQVLVTTTVIEVGVDIKNATIMVILDADRFGIAQLHQLRGRVGRGKKQSYAILVSDP 579 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLE 657 ++ R+ + +T DGF +AE+DLK R G+++GIKQ+GMP+F + P +HD ++E Sbjct: 580 K-TQYGIDRMEAIVSTNDGFALAEKDLKLRGPGDVIGIKQAGMPEFNVGDP-IHDLKMME 637 Query: 658 IARKDAKHILTQ-DPDLTSVRGQSIRIL-LYLYQYNE 692 A++ A I +Q + D + ++ L L +Y+Y + Sbjct: 638 TAQQSAIEITSQSNWDADKENAELVKYLSLTMYRYKD 674 >gi|320449878|ref|YP_004201974.1| ATP-dependent DNA helicase RecG [Thermus scotoductus SA-01] gi|320150047|gb|ADW21425.1| ATP-dependent DNA helicase RecG [Thermus scotoductus SA-01] Length = 775 Score = 365 bits (937), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 226/644 (35%), Positives = 358/644 (55%), Gaps = 13/644 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR--RPYKILLNDGTGE 100 DLL Y+P + DR P + + + + T++ + + K+ + ++ D G Sbjct: 125 DLLHYYPRRYEDRRTLPGVRFLEDGQKATLSVKVLSKELVKTPKKGMQLVQVRAQDAWGF 184 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160 L ++ +T +L + EG + VTG++++ +N + + H+ ++ ++ I +Y Sbjct: 185 RITLVWFNQTWVLSQIQ-EGETLIVTGRVQR-RNGVQLYVEHFENEGTESLSTGRIVPIY 242 Query: 161 SLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220 G+ ++ AL LP+ +E + + P +EA IH P +D E Sbjct: 243 PAKEGIGQAFLRRTAHRALETALPLPDPLEPYREEHRLLP-YSEALRQIHFP---EDEEA 298 Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280 A RL +DE + ++ LL +G VE + + +PF T++QE Sbjct: 299 LKKALLRLKFDEYVLLELKALLDAGGLV--LGRSFKVEETWTETFKKTLPFPLTRAQERV 356 Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340 + +I QDM +M R+LQGDVGSGKT+VA A+ A G Q +MAP ILA+QHY+ Sbjct: 357 MAEIAQDMQSPRQMARLLQGDVGSGKTVVAAYALYLAALNGAQGALMAPTEILAKQHYQN 416 Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400 + +Y + VE++ G+M R +ER+ G+A + +GTHAL Q+ + + L L +V Sbjct: 417 LSRYLFPLGVRVELLLGSMTPKEREGVIERLLSGEAQVAVGTHALIQEGVGFKDLGLAVV 476 Query: 401 DEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 DE+HRFGV QR L + A P VL+M+ATPIPR+L LT GD+++S + E P GRKP+K Sbjct: 477 DEEHRFGVLQRRALLKLAKVPPDVLVMSATPIPRSLALTLYGDLEVSILDEMPPGRKPVK 536 Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518 T ++P + + + +G + + + P IEE +E + ++ + L + Sbjct: 537 TKVLPHRLRLQAYAFAREEVRKGHQVFVVAPAIEESEELDLKTATALYEELKGLLPEVRM 596 Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578 A++HGRM +K+SVM++F+ G LL++TTV+EVG+D+ AS+II+ENAE FGLAQLHQ Sbjct: 597 ALLHGRMPAREKDSVMEAFRKGEFDLLVSTTVVEVGVDIPRASLIIVENAERFGLAQLHQ 656 Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638 LRGRVGRG + S +L S+ + RL VL+ + DGF IAE DLK R GE+ G +Q Sbjct: 657 LRGRVGRG-GLESYAILIAGEASQKTLKRLKVLEESGDGFYIAEMDLKLRGPGELRGTRQ 715 Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682 SG P+ + ++E AR AK IL DPDL+ + Q+++ Sbjct: 716 SGYPELKLGDLSQDTEVIEQARALAKRILEMDPDLSLPQHQALK 759 >gi|227517284|ref|ZP_03947333.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0104] gi|257417234|ref|ZP_05594228.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis AR01/DG] gi|227075291|gb|EEI13254.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0104] gi|257159062|gb|EEU89022.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis ARO1/DG] Length = 678 Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 219/628 (34%), Positives = 359/628 (57%), Gaps = 20/628 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98 DLL Y+P + D + +SEI ++ VT+ G + S + +K R ++++ Sbjct: 31 DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 I + FF + LK+ +I V GK + + + +++D + P+ Sbjct: 90 --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFS-PIYHV 144 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 + V L + E S ++ E + DLL+K EA +H P ++ Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LVEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE- 200 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277 + A+ R+ ++E Q+ + ++KQ K E G+ I + + + +PF T +Q Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDVDRLKTFTQGLPFELTGAQ 258 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + +I +D+ M R+LQGDVGSGKT+VA IA+ A + AG Q +M P ILAQQH Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 E +++ ++ ++TG+ RR LE +A+G+ I++GTHAL Q + +++L L Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI DEQHRFGV QR L +K P VL MTATPIPRTL +T+ G++D+S I E PAGR P Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516 I+T I ++D V+E ++ L+ G +AY ICP IEE + + ++ E F + ++ Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + ++HG+M + +K+ +M FK+ +LL++TTVIEVG++V +A++++I +A+ FGLAQ Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG S CIL+ +P ++ R+ ++ T +GF+++E DL+ R GE+ G Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663 +QSG+P+F + ++LE+AR++A Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645 >gi|297530639|ref|YP_003671914.1| ATP-dependent DNA helicase RecG [Geobacillus sp. C56-T3] gi|297253891|gb|ADI27337.1| ATP-dependent DNA helicase RecG [Geobacillus sp. C56-T3] Length = 682 Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 230/670 (34%), Positives = 376/670 (56%), Gaps = 37/670 (5%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G++ + L+ I E LL Y P + D + + ++ + E VT Sbjct: 8 PVTAVKGIGEETAAALADI-GIATVGE-----LLAYAPYRY-DDYEQKDLAVVRHEEKVT 60 Query: 72 ITG--YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G Y + ++ +K+ + IT++ F R LK +TV GK Sbjct: 61 VEGKVYSAPLLTYYGKKKSRLSFRMLADRYLITVVCFNRP--YLKEKIALNETVTVIGKW 118 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNF------PLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183 + + I N+ ++ F IE VYS+ + L+V ++++ A + Sbjct: 119 DRHRQAI----------NAYELRFGPAPETTGIEPVYSVRSPLTVKTMRRLMKAAFEQFG 168 Query: 184 V-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 +P+ + L + EA +H PR ++ AR RL Y+E L Q+ + Sbjct: 169 EHIPDLLPPALRRAYRLVDKQEALRALHFPRTREELHQ---ARRRLIYEEFLLYQLKMQA 225 Query: 243 MRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R+ + E G+ + + L +PF T +Q I +IL DM +M R+LQGD Sbjct: 226 LRRLMRDERRGVVHSFSEERLSSFLSGLPFVLTNAQRRVIGEILADMRSPRQMNRLLQGD 285 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VA +A+ AA +G Q +M P ILA+QH + + +T + + ++T ++ Sbjct: 286 VGSGKTVVAAVALYAAALSGFQGALMVPTEILAEQHARSLAELFADTDVTIALLTSSVKG 345 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 R+ L + G I++GTHAL Q+ +Q+++L LVI DEQHRFGV+QR L +K AP Sbjct: 346 KQRKAVLAELEEGTIDIVVGTHALIQEGVQFHRLGLVITDEQHRFGVEQRRVLREKGHAP 405 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPRTL +T+ GD+D+S + E PAGRK ++T + ++ V++ ++ L Sbjct: 406 DVLMMTATPIPRTLAITAFGDMDVSVLDEMPAGRKKVETYWVKHHQFSRVLDFIEKELRR 465 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKN 539 G +AY ICP IEE + + ++ ++ + L ++ I ++HGR+S +KE VM +F Sbjct: 466 GHQAYVICPLIEESDKLDVQNAIDVHSQLVHYYRGKYEIGLMHGRLSADEKERVMRAFSE 525 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 +L++TTV+EVG++V +A++++I +AE FGLAQLHQLRGRVGRG+ S CIL+ P Sbjct: 526 NRIHVLVSTTVVEVGVNVPNATVMVIYDAERFGLAQLHQLRGRVGRGDAQSYCILIADPK 585 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEI 658 S+ R+ ++ T DGF++AE+DL+ R G+ G KQSG+P+F P +HD +LE+ Sbjct: 586 -SEVGKERMRIMTETADGFVLAEKDLELRGPGDFFGTKQSGLPEFRYGDP-VHDYRILEV 643 Query: 659 ARKDAKHILT 668 AR+DA +++ Sbjct: 644 ARRDAAKLVS 653 >gi|220912992|ref|YP_002488301.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6] gi|219859870|gb|ACL40212.1| DEAD/DEAH box helicase domain protein [Arthrobacter chlorophenolicus A6] Length = 757 Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 248/761 (32%), Positives = 383/761 (50%), Gaps = 93/761 (12%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L+ R +GK+ + + K +N T LL Y P ++ R IS++ + VT+ Sbjct: 7 LALERRIGKRSAGVIEKHLNI-----TTVEGLLNYFPRRYMARGELTPISDLPRDEEVTL 61 Query: 73 TGYISQHSSFQLQKRRPY--KILLNDGTGEITLL------FFYRKTEMLKNVFFE----- 119 + ++ +Q RR ++++D G L F + LK FF Sbjct: 62 IARVLSSNTRSMQARRGTITDVVISDDDGRNGLKLVGGTDFHGKVPGTLKISFFNAFRAK 121 Query: 120 -----GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-------------FPLIEAVYS 161 GR+ +GK+ K + + +P + +S P+ A Sbjct: 122 SELLPGRRALFSGKVTSFKGSLGLTNPDFQVLDSDPFTAGGDDPEKLAAMPIPVYPATAK 181 Query: 162 LPTGLSVDLFKKIIVEALSR--LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 LP+ +K+I L L LP+ + + + ++ F +A+A+ +IH P A D++ Sbjct: 182 LPSWK----IQKVIATLLETVDLAALPDPVPETVTAREEFLPLADAYRLIHEPETAADWQ 237 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGI---PINVEGKIAQKILRNIPFSPTKS 276 AR+R Y E L Q AL R Q E P+ +G +A RN+PF+ T Sbjct: 238 R---ARQRFRYQEALVLQSALARRRSQLAAEEATARRPVR-DGLLA-AFDRNLPFTLTDG 292 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q + K + ++ + M R+LQG+VGSGKT+VAL AM V+AGGQA ++AP +LA Q Sbjct: 293 QAAVGKTLAAGLAADHPMNRLLQGEVGSGKTVVALRAMLQVVDAGGQAALLAPTEVLAAQ 352 Query: 337 HYEFIKKY---------------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 H++ I++ T + V ++TG+MP A RR+A+ A G A I+IG Sbjct: 353 HFDSIRRTLGPLSRDGLLGAFGGTDGQAVQVTLLTGSMPAAARRQAMLDAASGTAGIVIG 412 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSL 440 THAL D++ +Y L L++VDEQHRFGV+QR L KA PH+L+MTATPIPRT+ +T Sbjct: 413 THALLSDNVSFYDLGLIVVDEQHRFGVEQRDALRAKARKPPHLLVMTATPIPRTVAMTVF 472 Query: 441 GDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKK 496 GD++ S + E P GR PI T ++ + + R + + G + Y +CP+I Sbjct: 473 GDLETSTLDELPKGRAPISTHLVGLAENPGWAGRIWARAREEIDAGHQVYVVCPKIGTDD 532 Query: 497 ESNFR----------------------SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534 + +F +VVE+ +A +HGR K + M Sbjct: 533 DGDFTPGEAEPAAADLEENGRELASVTAVVEQLQDEPSIAGVPVAPLHGRQDPDLKSATM 592 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F + KLL++TTVIEVG+DV +A++++I +A+ FG++QLHQLRGRVGRG +C+L Sbjct: 593 AGFAANSIKLLVSTTVIEVGVDVHNATMMVILDADRFGISQLHQLRGRVGRGGLPGTCLL 652 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHD 653 + S RL + T DGF++++EDLK R+EG+ILG QSG L + + H+ Sbjct: 653 VTSLERGHPSRRRLDAVAATTDGFVLSQEDLKLRREGDILGASQSGGRSTLRLLRVLEHE 712 Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694 ++ AR DA+ I+T D L + + I YL EAF Sbjct: 713 DIIAQARSDAQEIVTGDASLAAHPELADAIDRYLNPEKEAF 753 >gi|320530666|ref|ZP_08031712.1| ATP-dependent DNA helicase RecG [Selenomonas artemidis F0399] gi|320137074|gb|EFW29010.1| ATP-dependent DNA helicase RecG [Selenomonas artemidis F0399] Length = 688 Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 231/651 (35%), Positives = 361/651 (55%), Gaps = 40/651 (6%) Query: 17 RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76 RGVG + + L ++ ET DLL Y+P ++ D+ +I+++ T+ G I Sbjct: 11 RGVGVQKAAALRRL-----GIET-VSDLLTYYPRAYEDQSRITRIADLRSGTRATVVGVI 64 Query: 77 SQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133 Q + +RR + +L + DGTG ++F ++ LK+ EGR+I +TGK Sbjct: 65 -QTVVERPTRRRGFTVLTALIGDGTGYAQAVWFNQR--FLKSKLREGRRIFLTGKADYAY 121 Query: 134 NR------IIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP---- 183 + ++ + I +Y+ GL+ ++++ AL Sbjct: 122 GGGGQLALTQITSLEFLGAEESPASRLGILPIYAATEGLTQKQLRQMMAYALRETAENLT 181 Query: 184 -VLPEWI--EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 LP+ + E L+++ A+AF IH P++A++ S AR RLA++EL Q L Sbjct: 182 ETLPDVVRTEYGLVRR------ADAFRRIHFPKRAEEL---SDARRRLAFEELYLIQCGL 232 Query: 241 LLMRKQ-FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L ++K+ + + GI G +L +PF+ T+ Q++ ++ +DM M R++Q Sbjct: 233 LALKKRSVESQRGIAHGENGVRVAAVLEALPFTLTEDQQTVWTEVARDMESPLPMRRLVQ 292 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT +AL+A+ VE+G Q MAP ILA+QHY+++++ I V ++G + Sbjct: 293 GDVGSGKTAIALLALVKTVESGRQGAFMAPTEILARQHYDYLQELLTPLGIRVAFLSGRL 352 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA- 418 + R + +A + I++GTHAL +D + + L LV+ DEQHRFGV QR L +K+ Sbjct: 353 AKKARTETDAALAAHEVDIVVGTHALIEDHVAFAALGLVVTDEQHRFGVAQRSALEKKSE 412 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 P VL+MTATPIPRT+ LT GD+D+S+I P GR+ I+T + ++ ++ Sbjct: 413 VTPDVLVMTATPIPRTMTLTVYGDLDVSRIEHLPPGRRAIRTFLRTDAARAKIYAFVRKE 472 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDS 536 + G++AY +CP+IE +ES+ S E ++ L I ++HGRM DK++VM Sbjct: 473 IESGRQAYVVCPRIEASEESDLPSAEEVYDELSRGVFRGIRCGLLHGRMKAADKDAVMRD 532 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F KLL++TTVIEVG++V +ASI+++E+AE FGLAQLHQLRGRVGRG S CIL+ Sbjct: 533 FYEDRIKLLVSTTVIEVGVNVPNASILVVEHAERFGLAQLHQLRGRVGRGAYASYCILIA 592 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 S RL V++ T DGF +AEEDL+ R G+ G Q G+ IA Sbjct: 593 GA--SAAQAERLKVIEQTSDGFRLAEEDLRLRGPGQFFGAMQHGLGDLKIA 641 >gi|60683179|ref|YP_213323.1| ATP-dependent DNA helicase RecG [Bacteroides fragilis NCTC 9343] gi|60494613|emb|CAH09414.1| putative ATP-dependent DNA helicase [Bacteroides fragilis NCTC 9343] Length = 698 Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 236/671 (35%), Positives = 368/671 (54%), Gaps = 23/671 (3%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + + L+K + + + DLL+Y P ++DR I EI + + G I Sbjct: 14 GVGPQKAAVLNKELEIYSLH-----DLLYYFPYKYVDRSRIYYIHEIDGNMPYIQLKGKI 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 +F ++R +DGTG + L++F + + + N + + V GK RI Sbjct: 69 LGFETFGEGRQRRLLAHFSDGTGVVDLVWF-QGIKYVTNKYKLHEEYIVFGKPTVFNGRI 127 Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190 + HP ++ ++ Y+ + +E + + L E + Sbjct: 128 NVAHPDIDSPADLKLSSMGLQPYYNTTEKMKRSFLNSHAIEKMMATVIGQIQEPLSETLS 187 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 L+ S+ +A IH P E A+ RL ++EL Q+ +L K +++ Sbjct: 188 PKLIADHHLMSLTDALRNIHFPSNP---ELLRKAQYRLKFEELFYVQLNILRYAKDRQRK 244 Query: 251 I-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 G G+I +N+PF T +Q+ +++I QD+ +M R+LQGDVGSGKTL Sbjct: 245 YRGYVFETVGEIFNTFYSKNLPFELTGAQKRVLREIRQDVGCGKQMNRLLQGDVGSGKTL 304 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VAL++M A++ G QA +MAP ILA QHY+ I++ + VE++TG++ R L Sbjct: 305 VALMSMLMALDNGFQACMMAPTEILANQHYDTIRELLFGMDVRVELLTGSVKGKKREAIL 364 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLLMT 427 + G HI+IGTHA+ +D++ + L L ++DEQHRFGV QR +L K+ PHVL+MT Sbjct: 365 AGLLTGDVHILIGTHAVIEDTVNFASLGLAVIDEQHRFGVAQRARLWSKSVQPPHVLVMT 424 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T GD+D+S I E P GRKPI T+ NR + + ++ + EG++ Y Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATIHQFDNRRESLYRSVRKQIEEGRQVYI 484 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 + P I+E ++ + +++ E + + E F + +HG+M +K++ M F +G ++++ Sbjct: 485 VYPLIKESEKIDLKNLEEGYLHICEEFPDCKVCKVHGKMKPAEKDAQMQLFISGDAQIMV 544 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S CIL+ L++ + Sbjct: 545 ATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCILVTTYKLTEETRK 604 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKH 665 RL ++ T DGF IAE DLK R G++ G +QSG+ L IA LL+ R A+ Sbjct: 605 RLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLLQYVRTIAEE 664 Query: 666 ILTQDPDLTSV 676 I D DL V Sbjct: 665 I--TDADLGGV 673 >gi|256960459|ref|ZP_05564630.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis Merz96] gi|293385117|ref|ZP_06630943.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis R712] gi|312906699|ref|ZP_07765699.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis DAPTO 512] gi|312910839|ref|ZP_07769675.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis DAPTO 516] gi|256950955|gb|EEU67587.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis Merz96] gi|291077594|gb|EFE14958.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis R712] gi|310627347|gb|EFQ10630.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis DAPTO 512] gi|311288862|gb|EFQ67418.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis DAPTO 516] Length = 678 Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 219/628 (34%), Positives = 359/628 (57%), Gaps = 20/628 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98 DLL Y+P + D + +SEI ++ VT+ G + S + +K R ++++ Sbjct: 31 DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 I + FF + LK+ +I V GK + + + +++D P+ Sbjct: 90 --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 + V L + E S ++ E + DLL+K EA +H P ++ Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LVEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE- 200 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277 + A+ R+ ++E Q+ + ++KQ K E G+ I + + + + +PF T +Q Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDVERLKTFTQGLPFELTGAQ 258 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + +I +D+ M R+LQGDVGSGKT+VA IA+ A + AG Q +M P ILAQQH Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 E +++ ++ ++TG+ RR LE +A+G+ I++GTHAL Q + +++L L Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI DEQHRFGV QR L +K P VL MTATPIPRTL +T+ G++D+S I E PAGR P Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516 I+T I ++D V+E ++ L+ G +AY ICP IEE + + ++ E F + ++ Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + ++HG+M + +K+ +M FK+ +LL++TTVIEVG++V +A++++I +A+ FGLAQ Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG S CIL+ +P ++ R+ ++ T +GF+++E DL+ R GE+ G Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663 +QSG+P+F + ++LE+AR++A Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645 >gi|88802792|ref|ZP_01118319.1| putative ATP-dependent DNA helicase [Polaribacter irgensii 23-P] gi|88781650|gb|EAR12828.1| putative ATP-dependent DNA helicase [Polaribacter irgensii 23-P] Length = 698 Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 241/681 (35%), Positives = 372/681 (54%), Gaps = 29/681 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS-EERIV 70 P++ GV + + LS + N DLL + P +ID+ I+E+ V Sbjct: 6 PITYTEGVSVQRASLLSSELGLKTCN-----DLLNFFPFRYIDKTTFHAINELQPNASEV 60 Query: 71 TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 I G I++ +S ++ D TG + L++F + + LK+ V GK+ Sbjct: 61 QIVGRITRLNSIAQKRGSRLVATFQDATGSMELVWF-KGQKWLKDSLKVNEPYVVYGKLN 119 Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYS-----LPTGLSVDLFKKIIVEALSRL-P 183 + HP +F + ++ VY + G+S + I L + Sbjct: 120 HYNGSFSIPHPELELFSAYKKKLQTKMQPVYHTTERLVNAGISNKMMGNFIQRLLEQFYD 179 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 + E + +++L+ F + EA H P+ E + A RL ++EL I L L+ Sbjct: 180 SIQENLSQEILEDFKFMTKREALLNAHFPKSQ---EHLTKAENRLKFEELFF--IQLQLL 234 Query: 244 RKQFKKEI---GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 RK+ ++ G+ G I +N +PF T +Q+ +K++ +D++ M R+LQ Sbjct: 235 RKKLINKVKIKGVVFEKVGVIFNDFYKNKLPFDLTNAQKRVLKEVRKDVASGAHMNRLLQ 294 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT+VA++AM A++ G QA IMAP ILA QH+ + + ++ V I+TG++ Sbjct: 295 GDVGSGKTIVAILAMLLAIDNGFQATIMAPTEILANQHFIAVSELVAGMELKVAILTGSV 354 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 RR+ + G +I+IGTHAL +D +Q+ L + I+DEQHRFGV+QR KL K Sbjct: 355 RTKRRREIHAGLEDGTLNILIGTHALLEDKVQFKNLGIAIIDEQHRFGVKQRAKLWAKNV 414 Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV-IIPINRIDEVIERLKV 477 PH+L+MTATPIPRTL ++ GD+DIS I E P GRK +KTV NR+ V + +K Sbjct: 415 LPPHILVMTATPIPRTLAMSVYGDLDISVIDELPPGRKEVKTVHRFDSNRLS-VFKFMKD 473 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVM 534 + +G++ Y + P IEE +++ +++ + S+ F I+I+HG+M DKE M Sbjct: 474 EIEKGRQVYLVYPLIEESAAMDYKDLMDGYESVSREFPLPNYQISIVHGKMKPADKEFEM 533 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F G ++++ATTVIEVG++V +AS++IIE++E FGL+QLHQLRGRVGRG + S CIL Sbjct: 534 QRFVKGKTQIMVATTVIEVGVNVPNASVMIIESSERFGLSQLHQLRGRVGRGADQSYCIL 593 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 + LS + TRL + T DGF IAE DLK R G I+G +QSG+ IA Sbjct: 594 MSSFKLSPEAKTRLKTMVETTDGFKIAEVDLKLRGPGNIMGTQQSGVLDLKIADVVKDSK 653 Query: 655 LLEIARKDAKHILTQDPDLTS 675 +L AR A +L +D +L++ Sbjct: 654 ILVAARNTAISLLQEDENLSN 674 >gi|229918594|ref|YP_002887240.1| ATP-dependent DNA helicase RecG [Exiguobacterium sp. AT1b] gi|229470023|gb|ACQ71795.1| ATP-dependent DNA helicase RecG [Exiguobacterium sp. AT1b] Length = 676 Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 217/594 (36%), Positives = 332/594 (55%), Gaps = 28/594 (4%) Query: 85 QKRRPYKILLNDGTGEITLLF---FYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHP 141 + R +++LL D +F FY++ ++ G +TV GK NR+ + Sbjct: 76 KNRLQFRLLLEDRYAVQVTMFNRAFYKEKLVI------GETVTVKGKWDM--NRMTI--- 124 Query: 142 HYIFHNSQDVNFPL----IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK 197 ++ D+ F ++ +YSL GL+ F +I+ A ++ LPE + + + + Sbjct: 125 -----SATDLEFGAPSGGLQPIYSLRAGLTQKNFSRIVKLAFEQVNDLPEQVPQAIRDRY 179 Query: 198 SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257 +H P + ++ AR Y+E L Q+ L RK + G +++ Sbjct: 180 RLVDRMTMLRGMHFPDTVETYK---QARRSYVYEECLMYQLKLQAFRKMERSGNGRALHL 236 Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317 + + ++ + F T +Q I++I+ D+ + RM R+LQGDVGSGKT+VA IA+ A Sbjct: 237 DKHQLNEFVKRLAFPLTGAQTRVIREIVSDLERPERMNRLLQGDVGSGKTVVAAIALYAT 296 Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377 V AG Q +M P ILA+QH +++ + I + ++T ++ R L I G Sbjct: 297 VTAGYQGALMVPTEILAEQHATSLQELFEPFGITIALLTSSVKGKAREALLTAIRSGDVD 356 Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437 II+GTHAL Q +++ L L I DEQHRFGV+QR KL KA VL MTATPIPRTL + Sbjct: 357 IIVGTHALIQGPVEFSNLHLAITDEQHRFGVEQRKKLRDKAEFADVLYMTATPIPRTLAI 416 Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497 ++ G++D+S I E P GRKPI+T ++ID V + L+ G++AY I P IEE Sbjct: 417 SAFGEMDVSTIDEMPKGRKPIETYWAKHDQIDRVHTMVDRELALGRQAYVIAPLIEESDT 476 Query: 498 SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556 S + L E F++ + ++HG++S +K+ VM SF + ++L++TTV+EVG++ Sbjct: 477 LEVESATALYELLKERFSNYGVGLMHGKLSSTEKDEVMKSFADNATQILVSTTVVEVGVN 536 Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616 V +AS+III +AE FGLAQLHQLRGRVGRG S CIL+ P S RL + T D Sbjct: 537 VPNASLIIIHDAERFGLAQLHQLRGRVGRGAHQSFCILVGDPK-SDVGKVRLKTMTETND 595 Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670 GF++AE+DL+ R G+ G QSG+P F +A P L ++E+A +DA +L D Sbjct: 596 GFVLAEKDLELRGAGDFFGTAQSGLPSFRVADPVLDLKVMEVAMQDAVKLLGSD 649 >gi|187933724|ref|YP_001885426.1| ATP-dependent DNA helicase RecG [Clostridium botulinum B str. Eklund 17B] gi|187721877|gb|ACD23098.1| ATP-dependent DNA helicase RecG [Clostridium botulinum B str. Eklund 17B] Length = 677 Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 249/677 (36%), Positives = 361/677 (53%), Gaps = 48/677 (7%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 +++ +S+ +GVG K + L+K CG N +DLL Y P + + EI+ E Sbjct: 3 IYSDISSLKGVGPKLTERLNK---CGIFN---LLDLLLYFPRDYEFVNCNILFEEINGEE 56 Query: 69 --------------IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLK 114 I T TG I F+ + Y N +K Sbjct: 57 KQILRCKVIRIKGDIKTKTGKILTTIEFEYNGHKVYGKWFN--------------QRYIK 102 Query: 115 NVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKI 174 N F+ + + GK K++ + + +P + + D + I Y L +S + +K+ Sbjct: 103 NTFYINKVYNLMGKFKRIGKTLEVTNPTIVCEEALDNS---ILPKYPLKGDISNKVIEKL 159 Query: 175 IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234 I + + ++ E + D+L K + S+ +A IH P E A RL + EL Sbjct: 160 INLVIDSI-IIKENLPLDMLNKYNLISLNDAIRSIHFPENKDLLE---KAIIRLKFQELF 215 Query: 235 A-GQIALLLMRKQFKKEIGIPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKN 292 LL+ K K + GI + ++ K+L+ NIP+S T +Q +++IL+D + Sbjct: 216 TYSLKLLLVKHKLNKNKNGICFEWDNQL--KVLKDNIPYSLTNAQTKVVREILRDQKSQK 273 Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352 M R++QGDVGSGKT+VALI++ ++ G Q MAP ILA QHYE KK Q+ I + Sbjct: 274 PMNRLVQGDVGSGKTIVALISIFNVIKNGYQCAFMAPTEILANQHYEESKKLFQDFNIDI 333 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 EI+TG+ P +R+ E+I A +IIGTH LFQD + + KL L+I DEQHRFGV+QR Sbjct: 334 EILTGSTPLKEKRRIKEKIKQENAMLIIGTHTLFQDDVIFNKLGLIITDEQHRFGVEQRS 393 Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 KL K L+MTATPIPRTL L D+D+S I E P GRK I T N D Sbjct: 394 KLINKGKKADCLVMTATPIPRTLALYLYSDLDVSIIDELPPGRKRIDTRFYQENNRDIGY 453 Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA--IIHGRMSDIDK 530 E +++G++ Y +CP I+E ++ SV + L I I+HG+M I+K Sbjct: 454 ELALEEINKGRQVYIVCPLIDEDEKEELNSVETLYTKLKNGIFKDIGVEILHGKMKAIEK 513 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 + + FKN K+LI+TTVIEVG++V +AS++IIENAE FGLAQLHQLRGRVGRG+ S Sbjct: 514 QDRISRFKNNEFKVLISTTVIEVGVNVPNASVMIIENAERFGLAQLHQLRGRVGRGKYAS 573 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 CIL+ S + R+ ++ + DGF I+EEDLK R GE+ G KQSG F++A Sbjct: 574 YCILIAKAK-SNVTKKRMMIMTESNDGFFISEEDLKLRGSGEMFGRKQSGDSNFILADLY 632 Query: 651 LHDSLLEIARKDAKHIL 667 S+L A+ +A IL Sbjct: 633 EDISILRAAKHEAIDIL 649 >gi|314936610|ref|ZP_07843957.1| ATP-dependent DNA helicase RecG [Staphylococcus hominis subsp. hominis C80] gi|313655229|gb|EFS18974.1| ATP-dependent DNA helicase RecG [Staphylococcus hominis subsp. hominis C80] Length = 683 Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 228/688 (33%), Positives = 378/688 (54%), Gaps = 22/688 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL + +G+G K L ++ N DL+ Y P+ + D ++ ++ VT Sbjct: 12 PLQSIKGLGPKRIALLHEL------NIHTIEDLVLYLPTRYEDNTV-VDLNLAEDQSTVT 64 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G I + R K+ ++ I + + LK + +T+ GK + Sbjct: 65 VAGEIYSVPTVAFFGRNKSKLTVHLMIDNIAVKCVFFNQPYLKKKIELNQTVTIKGKWNR 124 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLI--EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 K I + + IF N + + E VY L G+ + +I ++L+ + + EWI Sbjct: 125 AKQEI---NGNRIFFNDTHTSTEEVRLEPVYRLKEGIKQKQMRDMIHQSLNDVTI-HEWI 180 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFK 248 ++L Q+ + +H P KD + AR A+ EL ++ + L R + Sbjct: 181 TEELRQRYKLELLDYTIKTLHLP---KDKQALMRARRTYAFTELFMFELRMQWLNRLEKA 237 Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 + I IN + + ++++PF T +Q+S++ +I +D+ RM R+LQGDVGSGKT+ Sbjct: 238 SDEAIEINYDINKVKSFIQSLPFELTDAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTV 297 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VA I M A AG Q+ +M P ILA+QH + + + + V ++TG++ RR L Sbjct: 298 VAAICMYALKTAGYQSALMVPTEILAEQHANSLTELFGD-HMNVALLTGSVKGKKRRVLL 356 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428 E++ +G +IGTHAL QD +Q+ + LVI DEQHRFGV QR L +K +VL MTA Sbjct: 357 EQLENGTIDCLIGTHALIQDDVQFKNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTA 416 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488 TPIPRTL ++ G++D+S I + P GRKPI T + D+V+ ++ L +G++AY I Sbjct: 417 TPIPRTLAISVFGEMDVSSIKQLPKGRKPIITHWAKHEQYDQVLAQMTSELKKGRQAYVI 476 Query: 489 CPQIEEKKE-SNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 CP IE + + ++VVE F SL E + + + ++HG+MS +K+ VM F N +L+ Sbjct: 477 CPLIESSEHLEDVQNVVELFESLQEFYGKTHVGLLHGKMSADEKDDVMARFSNHDIDILV 536 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 +TTV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E S C+L+ P ++ Sbjct: 537 STTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIE 595 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666 R++++ T DGF ++E DL+ R G+ G+KQSG+P F++A +LE+AR +A + Sbjct: 596 RMTIMTQTTDGFELSEYDLEMRGPGDFFGVKQSGLPDFMVANIVEDYRMLEVARDEAAEL 655 Query: 667 LTQDPDLTSVRGQSIRILLYLYQYNEAF 694 + Q + + + + +R + + N +F Sbjct: 656 I-QSGEFFTEKYERLRAFINDHLLNMSF 682 >gi|315172952|gb|EFU16969.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX1346] Length = 678 Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 219/628 (34%), Positives = 358/628 (57%), Gaps = 20/628 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98 DLL Y+P + D + +SEI ++ VT+ G + S + +K R ++++ Sbjct: 31 DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 I + FF + LK+ +I V GK + + + +++D P+ Sbjct: 90 --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 + V L + E S ++ E + DLL+K EA +H P ++ Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LIEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE- 200 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277 + A+ R+ ++E Q+ + ++KQ K E G+ I + + + +PF T +Q Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDVDRLKTFTQGLPFELTGAQ 258 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + +I +D+ M R+LQGDVGSGKT+VA IA+ A + AG Q +M P ILAQQH Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 E +++ ++ ++TG+ RR LE +A+G+ I++GTHAL Q + +++L L Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI DEQHRFGV QR L +K P VL MTATPIPRTL +T+ G++D+S I E PAGR P Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516 I+T I ++D V+E ++ L+ G +AY ICP IEE + + ++ E F + ++ Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + ++HG+M + +K+ +M FK+ +LL++TTVIEVG++V +A++++I +A+ FGLAQ Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG S CIL+ +P ++ R+ ++ T +GF+++E DL+ R GE+ G Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663 +QSG+P+F + ++LE+AR++A Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645 >gi|171058263|ref|YP_001790612.1| ATP-dependent DNA helicase RecG [Leptothrix cholodnii SP-6] gi|170775708|gb|ACB33847.1| ATP-dependent DNA helicase RecG [Leptothrix cholodnii SP-6] Length = 671 Score = 364 bits (935), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 234/651 (35%), Positives = 359/651 (55%), Gaps = 26/651 (3%) Query: 40 RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKI----LLN 95 R IDL + P + D ++ E ++ + G + + + +L+ RR + + L Sbjct: 8 RDIDLALHLPLRYEDETRLTPLAAAREGDLLHVEGVVRE-ARIELRPRRQFIVKLVEALG 66 Query: 96 DGTGEITLLF-FYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP 154 D G I L+ F + F G ++ V G+++ +VHP + + + P Sbjct: 67 DAPGRIELILRFVNFYPSHQKTFAPGTRLRVRGELRGGFFGREIVHPVF---KTVEPGAP 123 Query: 155 L---IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHN 211 L + VY L +K + LSR L E + DLL P + E+ ++H+ Sbjct: 124 LARELTPVYPTSAQLPQAYLRKAVAAGLSRA-RLDEILPPDLL-PAGLPPLRESLYLLHH 181 Query: 212 PRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI--NVEGKIAQKI 265 P E PA +R+ ++ELLA Q++ L +++ + ++ P+ G + +K+ Sbjct: 182 PPADISLHAIQEREHPAWQRIKFEELLAQQLSQLQAQRE-RAKLRAPMLRGSAGGLHEKL 240 Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 L +PF T +Q ++I D+ + M R+LQGDVGSGKT+VA +A A A++AG Q Sbjct: 241 LAALPFQLTGAQRRVAEEIATDLGRPQPMNRLLQGDVGSGKTVVAALAAAVAMDAGWQCA 300 Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +MAP ILA+QH+ + + I V +TG+ R LE++A G A +++GTHA+ Sbjct: 301 LMAPTEILAEQHFRKLIHWLAPLGIEVAWLTGSRKGKGRAAMLEKVASGAAQLVVGTHAV 360 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK----ATAPHVLLMTATPIPRTLVLTSLG 441 QD + + +L L ++DEQHRFGV QRL L +K + PH+L+M+ATPIPRTL +T Sbjct: 361 IQDDVHFARLGLAVIDEQHRFGVAQRLDLRRKLALQSLEPHLLMMSATPIPRTLAMTYFA 420 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D+D+S I E P GR PI T + +R ++VI R++ +++G + YW+ P IEE + + + Sbjct: 421 DLDVSTIDELPPGRTPIVTRVFAADRREQVIARVRDEVAKGSQVYWVVPLIEESEALDLQ 480 Query: 502 SVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560 + E L + + ++HGRM +K SVM F G +L+ATTVIEVG+DV +A Sbjct: 481 NATETHQQLGAVLPGTQVGLLHGRMPPAEKASVMALFSGGQMSVLVATTVIEVGVDVPNA 540 Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620 S+++IE+AE FGLAQLHQLRGRVGRG S C+LLY PLS+ RL + T DGF I Sbjct: 541 SVMVIEHAERFGLAQLHQLRGRVGRGSVASVCVLLYTGPLSQTGRDRLKAMAETTDGFEI 600 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671 A DL+ R GE +G +QSG A LL+ AR+ A +L + P Sbjct: 601 ARRDLEIRGPGEFMGARQSGDALLRFADLAQDGELLQCAREIAPRLLDRHP 651 >gi|328950394|ref|YP_004367729.1| ATP-dependent DNA helicase RecG [Marinithermus hydrothermalis DSM 14884] gi|328450718|gb|AEB11619.1| ATP-dependent DNA helicase RecG [Marinithermus hydrothermalis DSM 14884] Length = 775 Score = 364 bits (935), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 218/637 (34%), Positives = 353/637 (55%), Gaps = 12/637 (1%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR--RPYKILLNDGTGE 100 DLL Y+P + DR P +S+ VT+TG + + + K+ + + +L D G Sbjct: 124 DLLHYYPRRYEDRRALPGFRLLSDGEKVTVTGRVLRKELVRTPKKGMQLVQAVLEDRWGW 183 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160 ++ + ++K EG +I TG++++ + ++ + ++ I VY Sbjct: 184 KLTAVWFNQPWVMKQ-LKEGARIIATGRVQRRGRYTTLAVEYFEDEEGESLSTGRITPVY 242 Query: 161 SLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220 G+S ++ + AL LP P+ + + + + A +H P E Sbjct: 243 PSKEGVSQAFLRRSVWRALEALPQPPDPLPEAYRAPRDLVDLPYALRQVHFPDDEAALER 302 Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280 A RL +DE L ++ ++L + +G V + ++PF T +QE A Sbjct: 303 ---ALARLRFDEYLFLELRVMLQSGE-SALVGRVFEVREADLRAFRESLPFPLTGAQERA 358 Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340 I++I DM+ +M R+LQGDVGSGKT+VA A+ A G Q+ +MAP ILA+QH++ Sbjct: 359 IREITADMASDRQMARLLQGDVGSGKTVVAAAALFVAARNGAQSALMAPTEILAKQHFQN 418 Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400 + +Y + VE++ G M A +R+ L R+ G+ +++GTHAL Q+ +++ L L ++ Sbjct: 419 LSRYLWPLGVRVELLVGAMSAAEKREVLRRVREGEVDVVVGTHALIQEDVEFKDLGLAVI 478 Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460 DE+HRFGV QR L + P VL+M+ATPIPR+L LT GD+++S + E P GRKP++T Sbjct: 479 DEEHRFGVLQRRALLK--GRPDVLVMSATPIPRSLALTLYGDLEVSVLDEMPPGRKPVRT 536 Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFTS-SI 518 ++P + + + +G + + + P IEE + + ++ + L I Sbjct: 537 KLLPAKLRHQAYAFARQEVQKGHQVFVVTPTIEESEAMAELQAATRLADELRALLPDVRI 596 Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578 I+HGRMS +K++VM+ F+ LL++TTVIEVG+D+ +A++++IENAE FGLAQLHQ Sbjct: 597 EILHGRMSAAEKDAVMERFRRQEFDLLVSTTVIEVGVDIPNATLMVIENAERFGLAQLHQ 656 Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638 LRGRVGRG+ + CIL+ SK + RL V++ + DGF IAE+DL+ R GE+ G +Q Sbjct: 657 LRGRVGRGDREAYCILIAG-DTSKRTMKRLKVIEESTDGFYIAEKDLELRGPGELRGTRQ 715 Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 SG+P + L+E AR AK IL +DP L + Sbjct: 716 SGLPDLKLGDLTKDTELIEAARALAKEILERDPYLNA 752 >gi|238924032|ref|YP_002937548.1| ATP-dependent DNA helicase RecG [Eubacterium rectale ATCC 33656] gi|238875707|gb|ACR75414.1| ATP-dependent DNA helicase RecG [Eubacterium rectale ATCC 33656] Length = 688 Score = 364 bits (935), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 236/685 (34%), Positives = 365/685 (53%), Gaps = 44/685 (6%) Query: 11 APLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 +P++ +G+G+K +K + G D+L + P ++ P+I++I E Sbjct: 5 SPITAVKGIGEKTQKAFAKMGVYTVG--------DILLHFPRDYVKF---PEITDIDELN 53 Query: 69 IVTITGYISQHSSFQLQKRRP-------YKILLND--GTGEITLLFFYRKTEMLKNVFFE 119 V ++ S ++ + + K+ P +I L D G + L +YR LK + Sbjct: 54 NVNVS---STYAIYAVIKKAPVVKNTARMQITLQDIGSPGHMIQLVWYR-MPYLKAQLVQ 109 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 GR + G IK R +M P + ++ VYS+ +G++ +L K I E L Sbjct: 110 GRHLIFYGHIKPKGGRYVMEQPVVYEVQKYEAIRDTLQPVYSVTSGVTNNLIVKTIKETL 169 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 S +L +++ KD+ + F A IH P DF+ AR RL +DE + Sbjct: 170 SHDTLLSDYLPKDIRHRYGFCEYNYAMKQIHFP---DDFDALVEARRRLVFDEFF---LF 223 Query: 240 LLLMRKQFKKEIGIPINVE---GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 ++ MR Q KK+ E ++ +P+ T +Q+ I +I QD+ M R Sbjct: 224 IMGMRYQNKKQQKDKNEFEFTDDAFIDGLIDKLPYELTGAQKKTIDEIKQDIKSPYVMQR 283 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE----FIKKYTQNTQIIV 352 ++QGDVGSGKT+VA + MA A + G Q+ IMAP +LA QHYE + ++ ++ ++ Sbjct: 284 LIQGDVGSGKTIVAFLLMAWASKCGYQSAIMAPTEVLANQHYETFCSLVSQFGLDSPVV- 342 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 ++TG+M +R+A + + + +IIGTHAL Q+ + L LVI DEQHRFGV+QR Sbjct: 343 -LLTGSMTAKQKREAYASLENEKNALIIGTHALIQEKADFSNLSLVITDEQHRFGVKQRE 401 Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 + K PH+L+M+ATPIPRTL + GD+DIS I E PA R PIK ++ + Sbjct: 402 SFSDKGRKPHILVMSATPIPRTLAIIIYGDMDISVINEVPAKRLPIKNCVVGTAFRPKAY 461 Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA--IIHGRMSDIDK 530 ++ + G +AY ICP +EE + S +V + + L I +++GRM K Sbjct: 462 SFIEEQVRAGHQAYVICPLVEETENSEGENVTDYADVLKAALPKDITVDVLNGRMKSKAK 521 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 + VM F N ++L++TTV+EVG++V +A++++IENA+ FGLAQLHQLRGRVGRG+ S Sbjct: 522 DEVMQRFANNESQVLVSTTVVEVGVNVPNATVMMIENADRFGLAQLHQLRGRVGRGDAQS 581 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 CI + SK S RL +L + DGF IA EDLK R G+ GI+QSG F +A Sbjct: 582 YCIFINS-SNSKKSKKRLEILNKSNDGFYIASEDLKLRGPGDFFGIRQSGDLAFALADVY 640 Query: 651 LHDSLLEIARKDAKHILTQDPDLTS 675 +L+ A + +L DP L + Sbjct: 641 QDSDVLKEASEMVDEVLEADPALCT 665 >gi|182435707|ref|YP_001823426.1| ATP-dependent DNA helicase RecG [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464223|dbj|BAG18743.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 734 Score = 364 bits (935), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 228/691 (32%), Positives = 369/691 (53%), Gaps = 75/691 (10%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGE 100 DLL ++P + +R ++++ + VT+ ++ F + + ++ L DG+G Sbjct: 34 DLLHHYPRRYEERGRLTALADLPLDEHVTVVAQVADARILMFNNGRGKRLEVTLTDGSGR 93 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-------- 152 + L+FF GR+ GK+ ++ + HP Y ++ D + Sbjct: 94 LQLVFFGHGVHKPHKELLPGRQAMFAGKVSVFNRKMQLAHPTYQLLDASDADEATEAVDA 153 Query: 153 --------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAE 204 +P + + S +VD +A+ LP L + + F S+ E Sbjct: 154 FAGRLLPIYPACKQLDSWRIAKAVDAVLPSARDAVDPLPA-------SLREGRGFTSLPE 206 Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK 264 A H P+ D E AR RL +DE Q+AL R+++ + +P +A Sbjct: 207 ALLKAHRPQTKADIE---DARARLKWDEAFVLQVAL--ARRRYA-DTQLPAAARRPVADG 260 Query: 265 ILR----NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320 +L +PF+ T+ Q+ K+I D++ ++ M R+LQG+VGSGKT+VAL AM A V+A Sbjct: 261 LLDAFDAKLPFTLTEGQQKVSKEIFDDLATEHPMHRLLQGEVGSGKTMVALRAMLAVVDA 320 Query: 321 GGQAVIMAPIGILAQQHYEFIKKY-------------TQNTQIIVEIITGNMPQAHRRKA 367 GGQA ++AP +LAQQH+ I + T+++ ++TG+M A RR+A Sbjct: 321 GGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGSDHGTKVV--LLTGSMGTAARRQA 378 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLM 426 L + G+A I+IGTHAL +D +Q++ L LV+VDEQHRFGV+QR L K PH+L+M Sbjct: 379 LLDLVTGEAGIVIGTHALIEDKVQFHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVM 438 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEG 482 TATPIPRT+ +T GD++ S + + PAGR PI + ++P + ER++ + G Sbjct: 439 TATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAKDKPHFLARAWERVREEVENG 498 Query: 483 KKAYWICPQI-----EEKKESNFRS------------VVERFNSLHEHFTSSIAI--IHG 523 +AY +CP+I EEK + ++ V+E + L + + + + +HG Sbjct: 499 HQAYVVCPRIGDDAEEEKGRAKKKAAEEDPDKRPPLAVLEIADELRKGALAGLGVEVLHG 558 Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583 RM +K+ VM F G +L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQLRGRV Sbjct: 559 RMHPDEKDDVMRRFAAGDVHVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRV 618 Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643 GRG C+L+ + + RLS + T DGF ++ DL+QR+EG++LG QSG+ Sbjct: 619 GRGSAPGLCLLVSEAHEASPARARLSAVAATLDGFELSRIDLEQRREGDVLGQAQSGVRS 678 Query: 644 FLIAQPELHD-SLLEIARKDAKHILTQDPDL 673 L + D ++ AR++A I+ DP+L Sbjct: 679 SLRMLTVIDDEEVIAAAREEAVAIVAADPEL 709 >gi|307288878|ref|ZP_07568851.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0109] gi|306500150|gb|EFM69494.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0109] gi|315164405|gb|EFU08422.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX1302] Length = 678 Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 219/628 (34%), Positives = 358/628 (57%), Gaps = 20/628 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98 DLL Y+P + D + +SEI ++ VT+ G + S + +K R ++++ Sbjct: 31 DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 I + FF + LK+ +I V GK + + + +++D P+ Sbjct: 90 --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 + V L + E S ++ E + DLL+K EA +H P ++ Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LIEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE- 200 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277 + A+ R+ ++E Q+ + ++KQ K E G+ I + + + +PF T +Q Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDVDRLKTFTQGLPFELTGAQ 258 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + +I +D+ M R+LQGDVGSGKT+VA IA+ A + AG Q +M P ILAQQH Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 E +++ ++ ++TG+ RR LE +A+G+ I++GTHAL Q + +++L L Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI DEQHRFGV QR L +K P VL MTATPIPRTL +T+ G++D+S I E PAGR P Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516 I+T I ++D V+E ++ L+ G +AY ICP IEE + + ++ E F + ++ Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + ++HG+M + +K+ +M FK+ +LL++TTVIEVG++V +A++++I +A+ FGLAQ Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG S CIL+ +P ++ R+ ++ T +GF+++E DL+ R GE+ G Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663 +QSG+P+F + ++LE+AR++A Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645 >gi|229548042|ref|ZP_04436767.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis ATCC 29200] gi|257080492|ref|ZP_05574853.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis E1Sol] gi|257091345|ref|ZP_05585706.1| ATP-dependent DNA helicase recG [Enterococcus faecalis CH188] gi|312905408|ref|ZP_07764522.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0635] gi|229306831|gb|EEN72827.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis ATCC 29200] gi|256988522|gb|EEU75824.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis E1Sol] gi|257000157|gb|EEU86677.1| ATP-dependent DNA helicase recG [Enterococcus faecalis CH188] gi|310631137|gb|EFQ14420.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0635] gi|315161222|gb|EFU05239.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0645] gi|315577138|gb|EFU89329.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0630] Length = 678 Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 219/628 (34%), Positives = 358/628 (57%), Gaps = 20/628 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98 DLL Y+P + D + +SEI ++ VT+ G + S + +K R ++++ Sbjct: 31 DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 I + FF + LK+ +I V GK + + + +++D P+ Sbjct: 90 --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 + V L + E S ++ E + DLL+K EA +H P ++ Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LIEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE- 200 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277 + A+ R+ ++E Q+ + ++KQ K E G+ I + + + +PF T +Q Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDVDRLKTFTQGLPFELTGAQ 258 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + +I +D+ M R+LQGDVGSGKT+VA IA+ A + AG Q +M P ILAQQH Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 E +++ ++ ++TG+ RR LE +A+G+ I++GTHAL Q + +++L L Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI DEQHRFGV QR L +K P VL MTATPIPRTL +T+ G++D+S I E PAGR P Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516 I+T I ++D V+E ++ L+ G +AY ICP IEE + + ++ E F + ++ Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + ++HG+M + +K+ +M FK+ +LL++TTVIEVG++V +A++++I +A+ FGLAQ Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG S CIL+ +P ++ R+ ++ T +GF+++E DL+ R GE+ G Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663 +QSG+P+F + ++LE+AR++A Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645 >gi|182625855|ref|ZP_02953621.1| ATP-dependent DNA helicase RecG [Clostridium perfringens D str. JGS1721] gi|177908889|gb|EDT71381.1| ATP-dependent DNA helicase RecG [Clostridium perfringens D str. JGS1721] Length = 690 Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 245/678 (36%), Positives = 378/678 (55%), Gaps = 46/678 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 ++ + +GVG K L+K+ +DLL Y P R Y +IS Sbjct: 16 IYDDIGLVKGVGPKLKERLNKV------GIFTVLDLLLYFP-----RDYEFLNDDIS--- 61 Query: 69 IVTITGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEML---------KNVF 117 + G S + K + Y I +G T+ F Y +++ K F Sbjct: 62 ---LNGDTSDEKAILKCKVQSYGSSIRTRNGKTLTTINFTYNNLKVIGKWFNQPYIKRNF 118 Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK KK+ N + +++P ++ N I +Y+L GL+ + K+I E Sbjct: 119 ILGNEYNLMGKFKKVNNTLEVINP---LIPCKEANKSEILPIYTLKNGLTNKILVKLINE 175 Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237 L + ++ E + +++++K S+ +A IH P + + A RL + EL Sbjct: 176 ILKNM-IIKENLPEEIVKKYKLISLDKAIRSIHFPEGRGELQ---SAINRLKFQELFTYS 231 Query: 238 IALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 + +++M+ KKE GI + + + + ++P++ T +Q +++IL D + M R Sbjct: 232 LKIIMMKAHIKKENSGISFKM-SPLLKDLKESLPYTLTNAQSRTLREILLDQKRNIAMNR 290 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 ++QGDVGSGKTLVALI+M G Q V+MAP ILA QHY KKY + +E++T Sbjct: 291 LVQGDVGSGKTLVALISMFNVYMNGYQTVLMAPTEILANQHYAEAKKYLDKFGVDIELLT 350 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G+ + +++ E+IA G+ ++IGTHAL QD ++ L LV+ DEQHRFGV+QR +L Sbjct: 351 GSTKEKEKKRIKEKIASGKEIMLIGTHALIQDDVELNNLGLVVTDEQHRFGVEQRSRLIN 410 Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERL 475 K VL+MTATPIPRTL L D+DIS I E P GRKPI T+++ +N R+ L Sbjct: 411 KNKRADVLVMTATPIPRTLSLYLYSDLDISIIDELPPGRKPIDTMLVDMNQRMKAYNFAL 470 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESV 533 K V +G++ Y + P IEE ++ N SV + + L I I+HG+M+ DK+ + Sbjct: 471 KEV-EKGRQFYIVSPLIEENEKLNLNSVEKIYEELKNGIFKDVRIEILHGKMAGKDKDKI 529 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 +++FKNG K +I+TTVIEVG++V +++++IIENAE FGLAQLHQLRGRVGRGE S CI Sbjct: 530 INTFKNGEIKGIISTTVIEVGVNVPNSTMMIIENAERFGLAQLHQLRGRVGRGEHKSYCI 589 Query: 594 LLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 L+ + +KN T R+ ++ + DGF IAEEDLK R GE+ G++Q G F++A Sbjct: 590 LIAN---TKNDITRRRMEIMTESSDGFYIAEEDLKLRGAGEVFGMRQHGDEGFILANVVD 646 Query: 652 HDSLLEIARKDAKHILTQ 669 ++L+ A +AK I+ Sbjct: 647 DINILKCANHEAKLIVNN 664 >gi|29377569|ref|NP_816723.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis V583] gi|227554533|ref|ZP_03984580.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis HH22] gi|256962943|ref|ZP_05567114.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis HIP11704] gi|257083222|ref|ZP_05577583.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis Fly1] gi|257088220|ref|ZP_05582581.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis D6] gi|257417957|ref|ZP_05594951.1| ATP-dependent DNA helicase recG [Enterococcus faecalis T11] gi|307273601|ref|ZP_07554829.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0855] gi|29345036|gb|AAO82793.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis V583] gi|227176331|gb|EEI57303.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis HH22] gi|256953439|gb|EEU70071.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis HIP11704] gi|256991252|gb|EEU78554.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis Fly1] gi|256996250|gb|EEU83552.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis D6] gi|257159785|gb|EEU89745.1| ATP-dependent DNA helicase recG [Enterococcus faecalis T11] gi|306509614|gb|EFM78656.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0855] gi|315026444|gb|EFT38376.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX2137] gi|315171209|gb|EFU15226.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX1342] gi|315573261|gb|EFU85452.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0309B] gi|315581165|gb|EFU93356.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0309A] Length = 678 Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 219/628 (34%), Positives = 358/628 (57%), Gaps = 20/628 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98 DLL Y+P + D + +SEI ++ VT+ G + S + +K R ++++ Sbjct: 31 DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 I + FF + LK+ +I V GK + + + +++D P+ Sbjct: 90 --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 + V L + E S ++ E + DLL+K EA +H P ++ Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LVEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE- 200 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277 + A+ R+ ++E Q+ + ++KQ K E G+ I + + + +PF T +Q Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDVDRLKTFTQGLPFELTGAQ 258 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + +I +D+ M R+LQGDVGSGKT+VA IA+ A + AG Q +M P ILAQQH Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 E +++ ++ ++TG+ RR LE +A+G+ I++GTHAL Q + +++L L Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI DEQHRFGV QR L +K P VL MTATPIPRTL +T+ G++D+S I E PAGR P Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516 I+T I ++D V+E ++ L+ G +AY ICP IEE + + ++ E F + ++ Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + ++HG+M + +K+ +M FK+ +LL++TTVIEVG++V +A++++I +A+ FGLAQ Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG S CIL+ +P ++ R+ ++ T +GF+++E DL+ R GE+ G Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663 +QSG+P+F + ++LE+AR++A Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645 >gi|315151044|gb|EFT95060.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0012] Length = 678 Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 219/628 (34%), Positives = 358/628 (57%), Gaps = 20/628 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98 DLL Y+P + D + +SEI ++ VT+ G + S + +K R ++++ Sbjct: 31 DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 I + FF + LK+ +I V GK + + + +++D P+ Sbjct: 90 --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 + V L + E S ++ E + DLL+K EA +H P ++ Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LIEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE- 200 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277 + A+ R+ ++E Q+ + ++KQ K E G+ I + + + +PF T +Q Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDVDRLKTFTQGLPFELTGAQ 258 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + +I +D+ M R+LQGDVGSGKT+VA IA+ A + AG Q +M P ILAQQH Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 E +++ ++ ++TG+ RR LE +A+G+ I++GTHAL Q + +++L L Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI DEQHRFGV QR L +K P VL MTATPIPRTL +T+ G++D+S I E PAGR P Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516 I+T I ++D V+E ++ L+ G +AY ICP IEE + + ++ E F + ++ Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + ++HG+M + +K+ +M FK+ +LL++TTVIEVG++V +A++++I +A+ FGLAQ Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG S CIL+ +P ++ R+ ++ T +GF+++E DL+ R GE+ G Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663 +QSG+P+F + ++LE+AR++A Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645 >gi|313672957|ref|YP_004051068.1| ATP-dependent DNA helicase recg [Calditerrivibrio nitroreducens DSM 19672] gi|312939713|gb|ADR18905.1| ATP-dependent DNA helicase RecG [Calditerrivibrio nitroreducens DSM 19672] Length = 756 Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 211/588 (35%), Positives = 327/588 (55%), Gaps = 15/588 (2%) Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLP----TGLSVDLFKKI 174 +G + GK++ +VHP ++ S D I VY LP L + L KK+ Sbjct: 178 KGENYNLYGKLQNFNGLPAIVHPEFL---STD-ELGKIRPVYLLPENVKDNLYLSLLKKV 233 Query: 175 IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-WTSPARERLAYDEL 233 +E + E + L+ K F + + IH P +F+ + + R Y+EL Sbjct: 234 YMEYSEHIV---ETLPLRLIIKYGFLDLKNSLRYIHFPDNINEFKKYNLLSHRRFVYEEL 290 Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 Q+ L + + + + GI +++ I + IPF T +Q+ A+KDI DM + Sbjct: 291 FYLQLGLFIRKNSYGEVRGIKFDIDKDILLTLKPYIPFKLTDAQKKALKDIFNDMKSSKQ 350 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R+LQGDVGSGKT+VA I+ AV+ G Q ++P ILA+QHY KK ++ Sbjct: 351 MNRLLQGDVGSGKTVVAFISGVLAVKNGYQVAFISPTEILAEQHYNNFKKLFKD-DFSSC 409 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 +ITG++ Q ++ + G I GTHA+ Q+ + L V++DEQHRFGV QR Sbjct: 410 LITGSLKQKDKKYLKALVESGDISFIFGTHAILQEDTIFKNLGFVVIDEQHRFGVMQRKI 469 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 L +K P +LLM+ATPIPRTL LT GD++IS I + P GRKPI T I +V + Sbjct: 470 LIEKGYTPDILLMSATPIPRTLSLTFYGDLEISIIDQLPPGRKPITTKAFRQKEIGKVFD 529 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKES 532 +K + +G AY++ P I+E + ++ + + + E F ++ I+HGRM +K Sbjct: 530 LVKEQIEKGFSAYFVYPLIDESDTLDLKAATQAYEQVAEFFGEDNVGILHGRMKAEEKNY 589 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +M+ FKN K+L++TTVIEVG+DV A++++IENAE FGL+QLHQLRGRVGRG + S C Sbjct: 590 LMNRFKNREIKILVSTTVIEVGVDVPHATVMVIENAERFGLSQLHQLRGRVGRGGDQSFC 649 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 L+Y +S++ R+ + N DGF ++E DL+ R G+ G +QSG+P + Sbjct: 650 YLVYSDKISEDGLKRIKAMINYNDGFKLSEIDLEMRGPGDFFGTRQSGLPDLKFSNIIKD 709 Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 +L AR+DA IL +DP L + ++ +L +++ +A++ + G Sbjct: 710 TDILLSAREDAFEILKEDPYLNKPENRILKEMLK-FKWKDAYELVNIG 756 >gi|291459590|ref|ZP_06598980.1| ATP-dependent DNA helicase RecG [Oribacterium sp. oral taxon 078 str. F0262] gi|291417868|gb|EFE91587.1| ATP-dependent DNA helicase RecG [Oribacterium sp. oral taxon 078 str. F0262] Length = 564 Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 216/543 (39%), Positives = 318/543 (58%), Gaps = 14/543 (2%) Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLP------EWIEKDLLQKKSFPSIAEAFNIIH 210 E VY GLS +K + AL P +++ + L +++ P + E+ + +H Sbjct: 20 EPVYPKSAGLSGQTIRKAVRAALLGFSEDPSPLHAFDFVPETLRRRRDLPGLYESLSAVH 79 Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270 P ++ ARER +Y+ELL +ALL +++ E + E A++ L ++P Sbjct: 80 CPGSEEE---ALLARERFSYEELLLFSLALLRRKRERSGERSRFLLTERGEAERFLHSLP 136 Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 FS T+ Q AI++I ++S M R+LQGDVGSGKT+VA A+ A +G QA +MAP Sbjct: 137 FSLTEGQREAIREIEGELSGGFVMNRLLQGDVGSGKTVVAFYALFLAASSGFQAAMMAPT 196 Query: 331 GILAQQHYEFIKKYTQNTQIIVE--IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 +LA+QHYE +++ + + E ++TG++ + +R+ RI G+ +I+GTHALFQ+ Sbjct: 197 ELLARQHYEKLREILKKISLPWEAALLTGSLSRGEKRELCRRIEEGELRLILGTHALFQE 256 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 I Y L LV+ DEQ RFGV QR ++K + PH+LL++ATPIPRTL L D+ +S+I Sbjct: 257 GIHYPALSLVVTDEQQRFGVLQRKAFSEKGSRPHILLLSATPIPRTLSLLLYQDMQVSRI 316 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 +PA R P+K +I + L +G++AY ICP IE+ E ++V E Sbjct: 317 PGRPAERLPVKNALIGAGERGKAWRFLAGECRKGRQAYIICPMIEDNGEPELQNVSEYQR 376 Query: 509 SLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 L I +HGRM +KE +M+SF +L++TTV+EVG+DV +AS+I+IE Sbjct: 377 KLRAFLPEGFRIEGLHGRMRAEEKERIMESFLRREIDILVSTTVVEVGVDVPNASVILIE 436 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626 NAE FGLAQLHQLRGRVGR S CILL SK S RLSVL + DGF IAEEDL+ Sbjct: 437 NAERFGLAQLHQLRGRVGRSSLQSYCILL-DCKNSKKSRERLSVLVRSNDGFWIAEEDLR 495 Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686 R GE+ GI+QSG +F A L + A +DA +L +DP L+ R + ++ L+ Sbjct: 496 LRGPGELFGIRQSGALQFRFADIYRDKELWKEASRDATELLEEDPGLSEKRNEKLQKRLF 555 Query: 687 LYQ 689 ++ Sbjct: 556 DFE 558 >gi|255970699|ref|ZP_05421285.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis T1] gi|312953204|ref|ZP_07772050.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0102] gi|255961717|gb|EET94193.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis T1] gi|310628821|gb|EFQ12104.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0102] gi|315152773|gb|EFT96789.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0031] gi|315159392|gb|EFU03409.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0312] gi|323479037|gb|ADX78476.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis 62] Length = 678 Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 219/631 (34%), Positives = 359/631 (56%), Gaps = 20/631 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98 DLL Y+P + D + +SEI ++ VT+ G + S + +K R ++++ Sbjct: 31 DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 I + FF + LK+ +I V GK + + + +++D P+ Sbjct: 90 --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 + V L + E S ++ E + DLL+K EA +H P ++ Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LVEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE- 200 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277 + A+ R+ ++E Q+ + ++KQ K E G+ I + + + +PF T +Q Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDVDRLKTFTQGLPFELTGAQ 258 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + +I +D+ M R+LQGDVGSGKT+VA IA+ A + AG Q +M P ILAQQH Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 E +++ ++ ++TG+ RR LE +A+G+ I++GTHAL Q + +++L L Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI DEQHRFGV QR L +K P VL MTATPIPRTL +T+ G++D+S I E PAGR P Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516 I+T I ++D V+E ++ L+ G +AY ICP IEE + + ++ E F + ++ Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + ++HG+M + +K+ +M FK+ +LL++TTVIEVG++V +A++++I +A+ FGLAQ Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG S CIL+ +P ++ R+ ++ T +GF+++E DL+ R GE+ G Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666 +QSG+P+F + ++LE+AR++A + Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEASSL 648 >gi|255974275|ref|ZP_05424861.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis T2] gi|256618137|ref|ZP_05474983.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis ATCC 4200] gi|300861637|ref|ZP_07107721.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TUSoD Ef11] gi|307284862|ref|ZP_07565018.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0860] gi|255967147|gb|EET97769.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis T2] gi|256597664|gb|EEU16840.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis ATCC 4200] gi|295114424|emb|CBL33061.1| ATP-dependent DNA helicase RecG [Enterococcus sp. 7L76] gi|300849098|gb|EFK76851.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TUSoD Ef11] gi|306503121|gb|EFM72378.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0860] gi|315031793|gb|EFT43725.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0017] gi|315145460|gb|EFT89476.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX2141] Length = 678 Score = 364 bits (934), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 219/628 (34%), Positives = 358/628 (57%), Gaps = 20/628 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98 DLL Y+P + D + +SEI ++ VT+ G + S + +K R ++++ Sbjct: 31 DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 I + FF + LK+ +I V GK + + + +++D P+ Sbjct: 90 --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 + V L + E S ++ E + DLL+K EA +H P ++ Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LVEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE- 200 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277 + A+ R+ ++E Q+ + ++KQ K E G+ I + + + +PF T +Q Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDVDRLKTFTQGLPFELTGAQ 258 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + +I +D+ M R+LQGDVGSGKT+VA IA+ A + AG Q +M P ILAQQH Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 E +++ ++ ++TG+ RR LE +A+G+ I++GTHAL Q + +++L L Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI DEQHRFGV QR L +K P VL MTATPIPRTL +T+ G++D+S I E PAGR P Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516 I+T I ++D V+E ++ L+ G +AY ICP IEE + + ++ E F + ++ Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + ++HG+M + +K+ +M FK+ +LL++TTVIEVG++V +A++++I +A+ FGLAQ Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG S CIL+ +P ++ R+ ++ T +GF+++E DL+ R GE+ G Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663 +QSG+P+F + ++LE+AR++A Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645 >gi|254756714|ref|ZP_05208743.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. Australia 94] Length = 539 Score = 364 bits (934), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 201/514 (39%), Positives = 319/514 (62%), Gaps = 18/514 (3%) Query: 159 VYSLPTGLSVDLFKKIIVEAL-----SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213 +YS+ L+V ++ I +AL S + VLP+ + L + K P EA +H P Sbjct: 1 MYSVKGKLTVKQMRRFIAQALKEYGDSIVEVLPDGL---LSRYKLLPRY-EALRALHFPT 56 Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFS 272 +D + AR R Y+E Q+ + +RK + + G + + Q+ + +PF Sbjct: 57 GQEDLK---QARRRFVYEEFFLFQLKMQTLRKMERENSKGTKKEIPSEELQEFIDALPFP 113 Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332 T +Q + +I++DM+ RM R+LQGDVGSGKT+VA I + AA A Q +M P I Sbjct: 114 LTGAQRRVVDEIMKDMTSPYRMNRLLQGDVGSGKTVVAAIGLYAAKLAHYQGALMVPTEI 173 Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392 LA+QHY+ + + + + VE++T ++ RR+ L ++ G+ I++GTHAL QD + + Sbjct: 174 LAEQHYQSLAETFSHFGMKVELLTSSVKGVRRREILAKLEQGEIDILVGTHALIQDEVIF 233 Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452 ++L LVI DEQHRFGV QR L +K +P VL MTATPIPRTL +T+ G++D+S I E P Sbjct: 234 HRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMTATPIPRTLAITAFGEMDVSIIDEMP 293 Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512 AGRK I+T + +D V+ ++ +++G++AY ICP IEE ++ + ++ ++ + L Sbjct: 294 AGRKVIETYWAKHDMLDRVLGFVEKEINKGRQAYVICPLIEESEKLDVQNAIDLHSMLTH 353 Query: 513 HFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 H+ + ++HGR+S +KE +M F ++L++TTV+EVG++V +A++++I +AE Sbjct: 354 HYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAER 413 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630 FGL+QLHQLRGRVGRG E S C+L+ P S+ R+ ++ T DGF+++E+DL+ R Sbjct: 414 FGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGKERMRIMTETNDGFVLSEKDLELRGP 472 Query: 631 GEILGIKQSGMPKFLIAQPELHD-SLLEIARKDA 663 G+ G KQSG+P+F +A +HD LE AR+DA Sbjct: 473 GDFFGSKQSGLPEFKVADM-VHDYRALETARQDA 505 >gi|300361942|ref|ZP_07058119.1| DNA helicase RecG [Lactobacillus gasseri JV-V03] gi|300354561|gb|EFJ70432.1| DNA helicase RecG [Lactobacillus gasseri JV-V03] Length = 679 Score = 364 bits (934), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 227/675 (33%), Positives = 377/675 (55%), Gaps = 30/675 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67 LF P++ +GVG K + L+ + IN DLLFY P + D P + +I + Sbjct: 8 LFEPVTELKGVGAKTATALAGLGINT-------IYDLLFYFPFRYDDLETIP-LDQIEDG 59 Query: 68 RIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123 + V + G + S F +K R +K+ ++ +I ++ F+ + LK+ G+++ Sbjct: 60 QKVLLKGIVVTDPFVSRFGYRKTRLSFKMKIDH---DIIMVNFFNQP-WLKDKVESGKEV 115 Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-L 182 V GK + + + + +D F +YS+ L + +K+I AL L Sbjct: 116 AVYGKYQVGRQSL---SGFKLVAEKKDSGFA---PIYSVNRHLKQNKLQKLIDLALEEVL 169 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 P + E I L +K S +H+P+ + AR + E Q+ L Sbjct: 170 PEVGETIPAVLREKYRLLSDQTLVEKMHHPKNGNE---AKIARRSAIFREFFLFQVQLAQ 226 Query: 243 MRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 + Q +++ GI + +++++ IPF + Q+ + +I D+ +M R+LQGD Sbjct: 227 LLSQRDEDVPGIEKRYDLAAVKELIQAIPFELSDDQKKVVNEIFADLHSPRQMRRLLQGD 286 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VA+ A+ AA+ AG QA +M P ILAQQH+ + + + + V ++TG+ + Sbjct: 287 VGSGKTVVAVFAIYAAITAGFQAALMVPTEILAQQHFTKVDELLRPLGVRVALLTGDTKE 346 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 +++ +A G +++IGTHAL Q + + L LVI+DEQHRFGV QR L +K AP Sbjct: 347 LEKKEIYRELADGTINVVIGTHALIQKDVHFKNLGLVIIDEQHRFGVNQRNTLIKKGVAP 406 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL MTATPIPRTL LT GD+ +S+I P GRKP+ + +++ EV+E +++ L + Sbjct: 407 DVLAMTATPIPRTLALTVYGDMAVSEIRHLPKGRKPVVSSWATSSKLKEVLELMRLQLDK 466 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540 G + Y + P I E ++S+ ++ + L +F ++ ++HG+M K +MDSF G Sbjct: 467 GFQIYVVTPLISESEKSDLKNAEDLQARLAHYFKDENVVLLHGQMKGNQKNEIMDSFAAG 526 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+ S C+ + P Sbjct: 527 KIDILVTTSVIEVGVDVPNANMMVIFNADRFGLSQLHQLRGRIGRGQTQSFCVFVSDPK- 585 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 ++ R+ ++ +T +GF +AEEDLK R EG++ G QSG+P+F + + L A+ Sbjct: 586 TEIGKKRMKIITSTSNGFKLAEEDLKLRGEGDVFGKAQSGLPQFQVGDVVNDYNTLVTAQ 645 Query: 661 KDAKHILTQDPDLTS 675 K+A+ ++ DP+LTS Sbjct: 646 KEARTLIKADPNLTS 660 >gi|256761066|ref|ZP_05501646.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis T3] gi|256682317|gb|EEU22012.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis T3] Length = 678 Score = 364 bits (934), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 219/630 (34%), Positives = 358/630 (56%), Gaps = 18/630 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRRPYKILLNDGTG 99 DLL Y+P + D + +SEI ++ VT+ G + S + +K R ++ + Sbjct: 31 DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLMFRMMQE-HA 88 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159 I + FF + LK+ +I V GK + + + +++D P+ Sbjct: 89 VINVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHVN 145 Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 + V L + E S ++ E + DLL+K EA +H P ++ Sbjct: 146 KKVRQSTLVQLIRTAFEEYGS---LVEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE-- 200 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQE 278 + A+ R+ ++E Q+ + ++KQ K E G+ I + + + +PF T +Q+ Sbjct: 201 -SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDVDRLKTFTQGLPFELTGAQK 259 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I +D+ M R+LQGDVGSGKT+VA IA+ A + AG Q +M P ILAQQH Sbjct: 260 KVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQHM 319 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E +++ ++ ++TG+ RR LE +A+G+ I++GTHAL Q + +++L LV Sbjct: 320 ESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGLV 379 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I DEQHRFGV QR L +K P VL MTATPIPRTL +T+ G++D+S I E PAGR PI Sbjct: 380 ITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIPI 439 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-- 516 +T I ++D V+E ++ L+ G +AY ICP IEE + + ++ E F + ++ Sbjct: 440 ETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPRY 499 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 + ++HG+M + +K+ +M FK+ +LL++TTVIEVG++V +A++++I +A+ FGLAQL Sbjct: 500 QVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQL 559 Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636 HQLRGRVGRG S CIL+ +P ++ R+ ++ T +GF+++E DL+ R GE+ G Sbjct: 560 HQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFGA 618 Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHI 666 +QSG+P+F + ++LE+AR++A + Sbjct: 619 RQSGVPQFAVGDIVTDFNILEVARQEASSL 648 >gi|255524279|ref|ZP_05391238.1| ATP-dependent DNA helicase RecG [Clostridium carboxidivorans P7] gi|255512104|gb|EET88385.1| ATP-dependent DNA helicase RecG [Clostridium carboxidivorans P7] Length = 685 Score = 364 bits (934), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 243/682 (35%), Positives = 385/682 (56%), Gaps = 45/682 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS-EISEE 67 +++ +S+ +GVG K + L K CG N +DLL Y P + I+ E + Sbjct: 7 VYSDISSIKGVGPKTADNLRK---CGIFN---VMDLLLYFPRDYESISSCGNINGEKTNN 60 Query: 68 RIVTITGYISQHSSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 +++ I + + + I+ +DG + +F + +KN F G T+ Sbjct: 61 KVIINCKTIRIERDIRTKTGKTLTTIVFHDGNNILKGKWFNQ--PYIKNSFRIGNIYTLM 118 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV---YSLPTGLSVDLFKK---IIVEALS 180 GKI++ + + + +P + N+Q+++ + E + Y L +G++ +L K II+E + Sbjct: 119 GKIEEFRGEMFIANPK-LLKNNQNIS-KVEEKIIPKYPLKSGITNNLVIKLVNIILEDVV 176 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 + LP++I + K + +A +IHNP + + A +RL + EL + + Sbjct: 177 IVENLPDYI----INKYKLCDLDKAIRVIHNPINLAELD---EATKRLKFQELFTYSLKI 229 Query: 241 LLMRKQF---KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 L+++ F KK I I K + IP+ TK+Q I++IL D + M R+ Sbjct: 230 LMLKNYFNENKKGIAFSI---AKELNALKDRIPYQLTKAQNRVIREILIDEKKSCPMNRL 286 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 +QGDVGSGKT+VALI++ ++ G QAV+MAP ILA QHY+ K + I ++++ G Sbjct: 287 VQGDVGSGKTIVALISIFNVIKNGYQAVMMAPTEILATQHYDEALKLFEGFGINIKLLCG 346 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 ++ Q ++++ + +A G+ +IIGTHAL +D +++ L +V+ DEQHRFGV QR +LT K Sbjct: 347 SVSQKNKQEIKKELASGEIDLIIGTHALIEDDVEFKNLGMVVTDEQHRFGVMQRSRLTNK 406 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 ++MTATPIPRTL L GD+++S I E P GR+ I+T I + D + Sbjct: 407 GANVDTIVMTATPIPRTLSLYLYGDLNVSIIDELPPGRQKIETQYI---KQDFKYKAYNF 463 Query: 478 VLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKES 532 L E G++ Y +CP +EE +E SV + L E + S+ I+HG+MS KE Sbjct: 464 ALDEIRKGRQVYIVCPLVEENEELKLSSVENLYTELKEEYFKDISVEILHGKMSPKLKEK 523 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +M+ FK G K++++TTVIEVGI+V +A+++IIENAE FGLAQLHQLRGRVGRG+ S C Sbjct: 524 IMNEFKEGKTKVIVSTTVIEVGINVPNATLMIIENAERFGLAQLHQLRGRVGRGKHKSYC 583 Query: 593 ILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 IL+ KN R+ ++K++ DGF IAE+DLK R GEI G +Q G ++A Sbjct: 584 ILIADI---KNDIIRKRMEIMKSSNDGFFIAEQDLKIRGAGEIFGFRQHGENGLILADVV 640 Query: 651 LHDSLLEIARKDAKHILTQDPD 672 +LL++A +AK LT+ D Sbjct: 641 QDINLLKLANAEAKR-LTESKD 661 >gi|269122133|ref|YP_003310310.1| ATP-dependent DNA helicase RecG [Sebaldella termitidis ATCC 33386] gi|268616011|gb|ACZ10379.1| ATP-dependent DNA helicase RecG [Sebaldella termitidis ATCC 33386] Length = 688 Score = 364 bits (934), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 242/655 (36%), Positives = 367/655 (56%), Gaps = 32/655 (4%) Query: 7 NPLFAPLSTFR--GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64 N LF L + G+GK L+K+ N DLL++ P ++ DR ISE+ Sbjct: 4 NLLFKNLDELKIKGLGKANVSKLNKL------NVRTLYDLLYFFPRAYEDRSNSKNISEV 57 Query: 65 SEERIVTITGYISQHSSFQLQK-RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123 + V + G I + S+ ++ R Y+ L D TG I L +F + + KN+ G ++ Sbjct: 58 LPDEFVVLKGKILKASNNYIKGGRYMYRAWLGDDTGVIELTWFNNRF-VQKNIKI-GDEM 115 Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP------LIEAVYSLPTGLSVDLFKKIIVE 177 V GK KK R+ +V+P Y ++V+ I +YS + L +KII E Sbjct: 116 IVYGKAKK-GMRMQIVNPEY-----KNVSVASLLPGNQILPIYSSTSSLKQGDLRKIIHE 169 Query: 178 ALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 A+ +L E + +L++K+ +A +H P + A R +E+ Sbjct: 170 AILNFGYLLEENLPDELMKKEGLLPRKDAVINVHFPENE---QLKQKALRRFMLEEIFLL 226 Query: 237 QIALLLMRKQFKKEIGIPINVEG--KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 ++ +L R + K +E ++ ++ +R +P+ T++Q+ IK+I ++ + + Sbjct: 227 EMGILQSRFEVDKANKGLYKIENNKELVKQFIRELPYELTRAQKKVIKEIYNELVKGKIL 286 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R++QGDVGSGKT+V+LI + VE Q IMAP ILA QHY I N + VE+ Sbjct: 287 NRLIQGDVGSGKTIVSLIMLLYMVENNYQGAIMAPTEILATQHYLGIVDEFNNLNVRVEL 346 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 +TG++ R K L+ I G I+IGTHAL ++ I ++ L L+I+DEQHRFGV QR L Sbjct: 347 LTGSVKGKKREKLLKEIEAGLVDIVIGTHALIENDIVFHSLGLIIIDEQHRFGVVQRKLL 406 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIE 473 K ++++M+ATPIPR+L LT GD+D+S I E PAGRK IKT I +++ + Sbjct: 407 RDKGELANLIVMSATPIPRSLALTIYGDLDVSVIDELPAGRKQIKTKWIKDQEEKNKMYD 466 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532 +K + EG++ Y + P IEE + N +S F E F IA+IHGRM + DK+ Sbjct: 467 FIKEKIREGRQVYVVSPLIEESETLNVKSAESTFEEYSEIFKGMEIALIHGRMKNKDKQE 526 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 VM+ F+ G +L++TTVIEVG++V +A+I++I +A+ FGL+ LHQLRGRVGRGE S C Sbjct: 527 VMEKFRKGNLNILVSTTVIEVGVNVPNATIMVIRDAQRFGLSSLHQLRGRVGRGEYRSYC 586 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 L +++ S RL +++NT DGF IAEEDLK R GEI G KQSG+ L+ Sbjct: 587 -FLESETINEISEKRLEIMENTIDGFKIAEEDLKLRNSGEIFGTKQSGVSDLLLT 640 >gi|307292130|ref|ZP_07571996.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0411] gi|306496783|gb|EFM66334.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0411] Length = 678 Score = 364 bits (934), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 219/628 (34%), Positives = 358/628 (57%), Gaps = 20/628 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98 DLL Y+P + D + +SEI ++ VT+ G + S + +K R ++++ Sbjct: 31 DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 I + FF + LK+ +I V GK + + + +++D P+ Sbjct: 90 --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 + V L + E S ++ E + DLL+K EA +H P ++ Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LVEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE- 200 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277 + A+ R+ ++E Q+ + ++KQ K E G+ I + + + +PF T +Q Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDVDRLKTFTQGLPFELTGAQ 258 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + +I +D+ M R+LQGDVGSGKT+VA IA+ A + AG Q +M P ILAQQH Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 E +++ ++ ++TG+ RR LE +A+G+ I++GTHAL Q + +++L L Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI DEQHRFGV QR L +K P VL MTATPIPRTL +T+ G++D+S I E PAGR P Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516 I+T I ++D V+E ++ L+ G +AY ICP IEE + + ++ E F + ++ Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + ++HG+M + +K+ +M FK+ +LL++TTVIEVG++V +A++++I +A+ FGLAQ Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG S CIL+ +P ++ R+ ++ T +GF+++E DL+ R GE+ G Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663 +QSG+P+F + ++LE+AR++A Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645 >gi|256958386|ref|ZP_05562557.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis DS5] gi|257078303|ref|ZP_05572664.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis JH1] gi|294780233|ref|ZP_06745605.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis PC1.1] gi|307270576|ref|ZP_07551874.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX4248] gi|256948882|gb|EEU65514.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis DS5] gi|256986333|gb|EEU73635.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis JH1] gi|294452776|gb|EFG21206.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis PC1.1] gi|306513157|gb|EFM81791.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX4248] gi|315034810|gb|EFT46742.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0027] gi|329575686|gb|EGG57213.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX1467] Length = 678 Score = 364 bits (934), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 218/628 (34%), Positives = 358/628 (57%), Gaps = 20/628 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98 DLL Y+P + D + +SEI ++ VT+ G + S + +K R ++++ Sbjct: 31 DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 I + FF + LK+ +I V GK + + + +++D P+ Sbjct: 90 --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 + V L + E S ++ E + DLL+K EA +H P ++ Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LIEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE- 200 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277 + A+ R+ ++E Q+ + ++KQ K E G+ + + + + +PF T +Q Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAVQYDVDRLKTFTQGLPFELTGAQ 258 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + +I +D+ M R+LQGDVGSGKT+VA IA+ A + AG Q +M P ILAQQH Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 E +++ ++ ++TG+ RR LE +A+G+ I++GTHAL Q + +++L L Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI DEQHRFGV QR L +K P VL MTATPIPRTL +T+ G++D+S I E PAGR P Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516 I+T I ++D V+E ++ L+ G +AY ICP IEE + + ++ E F + ++ Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + ++HG+M + +K+ +M FK+ +LL++TTVIEVG++V +A++++I +A+ FGLAQ Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG S CIL+ +P ++ R+ ++ T +GF+++E DL+ R GE+ G Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663 +QSG+P+F + ++LE+AR++A Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645 >gi|189463789|ref|ZP_03012574.1| hypothetical protein BACINT_00122 [Bacteroides intestinalis DSM 17393] gi|189438739|gb|EDV07724.1| hypothetical protein BACINT_00122 [Bacteroides intestinalis DSM 17393] Length = 698 Score = 364 bits (934), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 241/676 (35%), Positives = 379/676 (56%), Gaps = 31/676 (4%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + + L+K +N + + DLL+Y P ++DR I EI + + G I Sbjct: 14 GVGPQRASVLNKELNIYSLH-----DLLYYFPYKYVDRSRIYYIHEIDGTMPYIQLKGEI 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 + ++R +DGTG + L++F + + L + ++ V GK RI Sbjct: 69 LGFETIGEGRQRRLIAHFSDGTGIVDLVWF-QGIKFLVGKYKVHQEYIVFGKPSVFNGRI 127 Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLP-----TGLSVDLFKKIIVEALSRL-PVLPEWIE 190 + HP + ++ ++ Y+ + L+ +K++ + +L LPE + Sbjct: 128 NIAHPDIDNASELKLSTMGLQPYYNTTEKMKRSSLNSHAIEKMMSAVVQQLREPLPETLS 187 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 +L + + EA IH P E A+ RL ++EL Q+ +L K +++ Sbjct: 188 PAILTEHHLMPLTEALMNIHFPANP---ELLRKAQYRLKFEELFYVQLNILRYAKDRQRK 244 Query: 251 I-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 G G+I +N+PF T +Q+ +K+I +D+ +M R+LQGDVGSGKTL Sbjct: 245 YRGYVFETVGEIFNTFYAKNLPFELTGAQKRVLKEIRRDVGSGKQMNRLLQGDVGSGKTL 304 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VAL++M A++ G QA +MAP ILA QH+E I++ I VE++TG++ R L Sbjct: 305 VALMSMLIALDNGYQACMMAPTEILANQHFETIRELLYGMDIRVELLTGSVKGKKREAIL 364 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAPHVLLMT 427 + G I+IGTHA+ +D++ + L LV++DEQHRFGV QR +L T+ A PHVL+MT Sbjct: 365 TGLLTGDVRILIGTHAVIEDTVNFSSLGLVVIDEQHRFGVAQRARLWTKNAQPPHVLVMT 424 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID----EVIERLKVVLSEGK 483 ATPIPRTL +T GD+D+S I E P GRKPI T I++ D + + + ++EG+ Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPIVT----IHKYDAHRVSLYQSVHRQIAEGR 480 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTC 542 + Y + P I+E ++ + +++ E + + E F + +HG+M ++K++ M F +G Sbjct: 481 QVYIVYPLIKESEKIDLKNLEEGYLHICEEFPGCKVCKVHGKMKAVEKDAQMQLFVSGEA 540 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CIL+ L + Sbjct: 541 QIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCILVTGYKLVE 600 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARK 661 + RL ++ T DGF IAE DLK R G++ G +QSG+ L IA LL+ R Sbjct: 601 ETRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLLQYVRN 660 Query: 662 DAKHILTQDPDLTSVR 677 A+ ++ DP T +R Sbjct: 661 VAEEVVDADP--TGIR 674 >gi|239944591|ref|ZP_04696528.1| ATP-dependent DNA helicase RecG [Streptomyces roseosporus NRRL 15998] gi|239991053|ref|ZP_04711717.1| ATP-dependent DNA helicase RecG [Streptomyces roseosporus NRRL 11379] gi|291448054|ref|ZP_06587444.1| ATP-dependent DNA helicase RecG [Streptomyces roseosporus NRRL 15998] gi|291351001|gb|EFE77905.1| ATP-dependent DNA helicase RecG [Streptomyces roseosporus NRRL 15998] Length = 734 Score = 364 bits (934), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 226/694 (32%), Positives = 369/694 (53%), Gaps = 78/694 (11%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGE 100 DLL ++P + +R ++++ + VT+ ++ +F + + ++ L DG+G Sbjct: 31 DLLHHYPRRYEERGKLTALADLPLDEHVTVVAQVADARILTFNNGRGKRLEVTLTDGSGR 90 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-------- 152 + L+FF GR+ GK+ ++ + HP Y ++ D + Sbjct: 91 LQLVFFGHGVHKPHKELLPGRQAMFAGKVSVFNRKMQLAHPTYQLLDASDADEATEAVDA 150 Query: 153 --------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAE 204 +P + + S +VD +A+ LP L + + F + E Sbjct: 151 FAGRLLPIYPACKQLDSWRIAKAVDAVLPSAQDAVDPLPA-------SLREGRGFTPLPE 203 Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK 264 A +H P+ D E A+ RL +DE Q+AL R+++ + +P +A Sbjct: 204 ALLKVHRPQTKADIE---DAKARLKWDEAFVLQVAL--ARRRYA-DTQLPAAARRPVADG 257 Query: 265 ILR----NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320 +L +PF+ T+ QE K+I D++ ++ M R+LQG+VGSGKT+VAL AM A V+A Sbjct: 258 LLDAFDAKLPFTLTEGQEKVSKEIFDDLATEHPMHRLLQGEVGSGKTMVALRAMLAVVDA 317 Query: 321 GGQAVIMAPIGILAQQHYEFIKKYT-------------QNTQIIVEIITGNMPQAHRRKA 367 GGQA ++AP +LAQQH+ I + Q T+++ ++TG+M A RR+A Sbjct: 318 GGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGSEQGTKVV--LLTGSMGTAARRQA 375 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLM 426 L + G+A I+IGTHAL +D +Q++ L LV+VDEQHRFGV+QR L K PH+L+M Sbjct: 376 LLDLVTGEAGIVIGTHALIEDKVQFHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVM 435 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEG 482 TATPIPRT+ +T GD++ S + + PAGR PI + ++P + ER++ + G Sbjct: 436 TATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAKDKPHFLARAWERVREEVGNG 495 Query: 483 KKAYWICPQIEEKKESNFR--------------------SVVERFNSLHEHFTS--SIAI 520 +AY +CP+I + E +V+E + L + + ++ + Sbjct: 496 HQAYVVCPRIGDDAEEAEGKKGKAKKKAAEEDPEKRPPLAVLEIADELRKGALAGLTVEV 555 Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580 +HGRM +K+ VM F G +L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQLR Sbjct: 556 LHGRMHPDEKDDVMRRFAAGDVDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLR 615 Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 GRVGRG C+L+ + + RLS + T DGF ++ DL+QR+EG++LG QSG Sbjct: 616 GRVGRGSAAGLCLLVSEAHEASPARARLSAVAATLDGFELSRIDLEQRREGDVLGQAQSG 675 Query: 641 MPKFLIAQPELHD-SLLEIARKDAKHILTQDPDL 673 + L + D ++ AR++A I+ DP+L Sbjct: 676 VRSSLRMLTVIDDEEVIAAAREEAVAIVAADPEL 709 >gi|315167213|gb|EFU11230.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX1341] Length = 678 Score = 364 bits (934), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 219/628 (34%), Positives = 358/628 (57%), Gaps = 20/628 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98 DLL Y+P + D + +SEI ++ VT+ G + S + +K R ++++ Sbjct: 31 DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 I + FF + LK+ +I V GK + + + +++D P+ Sbjct: 90 --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 + V L + E S ++ E + DLL+K EA +H P ++ Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LVEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE- 200 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277 + A+ R+ ++E Q+ + ++KQ K E G+ I + + + +PF T +Q Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDVDRLKTFTQGLPFELTGAQ 258 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + +I +D+ M R+LQGDVGSGKT+VA IA+ A + AG Q +M P ILAQQH Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 E +++ ++ ++TG+ RR LE +A+G+ I++GTHAL Q + +++L L Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI DEQHRFGV QR L +K P VL MTATPIPRTL +T+ G++D+S I E PAGR P Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516 I+T I ++D V+E ++ L+ G +AY ICP IEE + + ++ E F + ++ Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + ++HG+M + +K+ +M FK+ +LL++TTVIEVG++V +A++++I +A+ FGLAQ Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG S CIL+ +P ++ R+ ++ T +GF+++E DL+ R GE+ G Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663 +QSG+P+F + ++LE+AR++A Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645 >gi|168207257|ref|ZP_02633262.1| ATP-dependent DNA helicase RecG [Clostridium perfringens E str. JGS1987] gi|170661340|gb|EDT14023.1| ATP-dependent DNA helicase RecG [Clostridium perfringens E str. JGS1987] Length = 690 Score = 363 bits (933), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 245/678 (36%), Positives = 378/678 (55%), Gaps = 46/678 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 ++ + +GVG K L+K+ +DLL Y P R Y +IS Sbjct: 16 IYDDIGLVKGVGPKLKERLNKV------GIFTVLDLLLYFP-----RDYEFLNDDIS--- 61 Query: 69 IVTITGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEML---------KNVF 117 + G IS + K + Y I +G T+ F Y +++ K F Sbjct: 62 ---LNGDISDEKAILKCKVQSYGSSIRTRNGKTLTTINFTYNNLKVIGKWFNQPYIKRNF 118 Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK KK+ N + +++P ++ N I +Y+L GL+ + K+I E Sbjct: 119 ILGNEYNLMGKFKKVNNTLEVINP---LIPCKEANKSEILPIYTLKNGLTNKILVKLINE 175 Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237 L + ++ E + ++++K S+ +A IH P + + A RL + EL Sbjct: 176 ILKNM-IIKENLPDEIVKKYKLISLDKAIRSIHFPEGRGELQ---SAINRLKFQELFTYS 231 Query: 238 IALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 + +++M+ KKE GI + + + + ++P++ T +Q +++IL D + M R Sbjct: 232 LKIIMMKAHIKKENSGISFKM-SPLLKDLKESLPYTLTNAQSRTLREILLDQKRNIAMNR 290 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 ++QGDVGSGKTLVALI+M G Q V+MAP ILA QHY KKY + +E++T Sbjct: 291 LVQGDVGSGKTLVALISMFNVYMNGYQTVLMAPTEILANQHYAEAKKYLDQFGVDIELLT 350 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G+ + +++ E+IA G+ ++IGTHA+ QD ++ L LV+ DEQHRFGV+QR +L Sbjct: 351 GSTKEKEKKRIKEKIASGKEIMLIGTHAVIQDDVELNNLGLVVTDEQHRFGVEQRSRLIN 410 Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERL 475 K VL+MTATPIPRTL L D+DIS I E P GRKPI T+++ +N R+ L Sbjct: 411 KNKRADVLVMTATPIPRTLSLYLYSDLDISIIDELPPGRKPIDTMLVDMNQRMKAYNFAL 470 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESV 533 K V +G++ Y + P IEE ++ N SV + + L I I+HG+M+ DK+ + Sbjct: 471 KEV-EKGRQFYIVSPLIEENEKLNLNSVEKIYEELKNGIFKDVRIEILHGKMAGKDKDKI 529 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 +++FKNG K +I+TTVIEVG++V +++++IIENAE FGLAQLHQLRGRVGRGE S CI Sbjct: 530 INTFKNGEIKGIISTTVIEVGVNVPNSTMMIIENAERFGLAQLHQLRGRVGRGEHKSYCI 589 Query: 594 LLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 L+ + +KN T R+ ++ + DGF IAEEDLK R GE+ G++Q G F++A Sbjct: 590 LIAN---TKNDITRRRMEIMTESSDGFYIAEEDLKLRGAGEVFGMRQHGDEGFILANVVD 646 Query: 652 HDSLLEIARKDAKHILTQ 669 ++L+ A +AK I+ Sbjct: 647 DINILKCANHEAKLIVNN 664 >gi|296185398|ref|ZP_06853808.1| ATP-dependent DNA helicase RecG [Clostridium carboxidivorans P7] gi|296050232|gb|EFG89656.1| ATP-dependent DNA helicase RecG [Clostridium carboxidivorans P7] Length = 681 Score = 363 bits (933), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 243/682 (35%), Positives = 385/682 (56%), Gaps = 45/682 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS-EISEE 67 +++ +S+ +GVG K + L K CG N +DLL Y P + I+ E + Sbjct: 3 VYSDISSIKGVGPKTADNLRK---CGIFN---VMDLLLYFPRDYESISSCGNINGEKTNN 56 Query: 68 RIVTITGYISQHSSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 +++ I + + + I+ +DG + +F + +KN F G T+ Sbjct: 57 KVIINCKTIRIERDIRTKTGKTLTTIVFHDGNNILKGKWFNQ--PYIKNSFRIGNIYTLM 114 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV---YSLPTGLSVDLFKK---IIVEALS 180 GKI++ + + + +P + N+Q+++ + E + Y L +G++ +L K II+E + Sbjct: 115 GKIEEFRGEMFIANPK-LLKNNQNIS-KVEEKIIPKYPLKSGITNNLVIKLVNIILEDVV 172 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 + LP++I + K + +A +IHNP + + A +RL + EL + + Sbjct: 173 IVENLPDYI----INKYKLCDLDKAIRVIHNPINLAELD---EATKRLKFQELFTYSLKI 225 Query: 241 LLMRKQF---KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 L+++ F KK I I K + IP+ TK+Q I++IL D + M R+ Sbjct: 226 LMLKNYFNENKKGIAFSI---AKELNALKDRIPYQLTKAQNRVIREILIDEKKSCPMNRL 282 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 +QGDVGSGKT+VALI++ ++ G QAV+MAP ILA QHY+ K + I ++++ G Sbjct: 283 VQGDVGSGKTIVALISIFNVIKNGYQAVMMAPTEILATQHYDEALKLFEGFGINIKLLCG 342 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 ++ Q ++++ + +A G+ +IIGTHAL +D +++ L +V+ DEQHRFGV QR +LT K Sbjct: 343 SVSQKNKQEIKKELASGEIDLIIGTHALIEDDVEFKNLGMVVTDEQHRFGVMQRSRLTNK 402 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 ++MTATPIPRTL L GD+++S I E P GR+ I+T I + D + Sbjct: 403 GANVDTIVMTATPIPRTLSLYLYGDLNVSIIDELPPGRQKIETQYI---KQDFKYKAYNF 459 Query: 478 VLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKES 532 L E G++ Y +CP +EE +E SV + L E + S+ I+HG+MS KE Sbjct: 460 ALDEIRKGRQVYIVCPLVEENEELKLSSVENLYTELKEEYFKDISVEILHGKMSPKLKEK 519 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +M+ FK G K++++TTVIEVGI+V +A+++IIENAE FGLAQLHQLRGRVGRG+ S C Sbjct: 520 IMNEFKEGKTKVIVSTTVIEVGINVPNATLMIIENAERFGLAQLHQLRGRVGRGKHKSYC 579 Query: 593 ILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 IL+ KN R+ ++K++ DGF IAE+DLK R GEI G +Q G ++A Sbjct: 580 ILIADI---KNDIIRKRMEIMKSSNDGFFIAEQDLKIRGAGEIFGFRQHGENGLILADVV 636 Query: 651 LHDSLLEIARKDAKHILTQDPD 672 +LL++A +AK LT+ D Sbjct: 637 QDINLLKLANAEAKR-LTESKD 657 >gi|315146597|gb|EFT90613.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX4244] Length = 678 Score = 363 bits (933), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 218/628 (34%), Positives = 358/628 (57%), Gaps = 20/628 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98 DLL Y+P + D + +SEI ++ VT+ G + S + +K R ++++ Sbjct: 31 DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 I + FF + LK+ +I V GK + + + +++D P+ Sbjct: 90 --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 + V L + E S ++ E + DLL+K EA +H P ++ Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LVEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE- 200 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277 + A+ R+ ++E Q+ + ++KQ K E G+ + + + + +PF T +Q Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAVQYDVDRLKTFTQGLPFELTGAQ 258 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + +I +D+ M R+LQGDVGSGKT+VA IA+ A + AG Q +M P ILAQQH Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 E +++ ++ ++TG+ RR LE +A+G+ I++GTHAL Q + +++L L Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI DEQHRFGV QR L +K P VL MTATPIPRTL +T+ G++D+S I E PAGR P Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516 I+T I ++D V+E ++ L+ G +AY ICP IEE + + ++ E F + ++ Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + ++HG+M + +K+ +M FK+ +LL++TTVIEVG++V +A++++I +A+ FGLAQ Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG S CIL+ +P ++ R+ ++ T +GF+++E DL+ R GE+ G Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663 +QSG+P+F + ++LE+AR++A Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645 >gi|293389090|ref|ZP_06633562.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis S613] gi|291081558|gb|EFE18521.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis S613] Length = 678 Score = 363 bits (933), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 219/628 (34%), Positives = 358/628 (57%), Gaps = 20/628 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98 DLL Y+P + D + +SEI ++ VT+ G + S + +K R ++++ Sbjct: 31 DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 I + FF + LK+ +I V GK + + + +++D P+ Sbjct: 90 --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 + V L + E S ++ E + DLL+K EA +H P ++ Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LVEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE- 200 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277 + A+ R+ ++E Q+ + ++KQ K E G+ I + + + + +PF T +Q Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDVERLKTFTQGLPFELTGAQ 258 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + +I +D+ M R+LQGDVGSGKT+VA IA+ A + AG Q +M P ILAQQH Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 E +++ ++ ++TG+ RR LE +A+G+ I++GTHAL Q + +++L L Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI DEQHRFGV QR L +K P VL MTATPIPRTL +T+ G++D+S I E PAGR P Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516 I+T I ++D V+E ++ L+ G +AY ICP IEE + + ++ E F + ++ Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + ++HG+M + +K+ +M FK+ +LL +TTVIEVG++V +A++++I +A+ FGLAQ Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLFSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG S CIL+ +P ++ R+ ++ T +GF+++E DL+ R GE+ G Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663 +QSG+P+F + ++LE+AR++A Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645 >gi|261419384|ref|YP_003253066.1| ATP-dependent DNA helicase RecG [Geobacillus sp. Y412MC61] gi|319766199|ref|YP_004131700.1| ATP-dependent DNA helicase RecG [Geobacillus sp. Y412MC52] gi|261375841|gb|ACX78584.1| ATP-dependent DNA helicase RecG [Geobacillus sp. Y412MC61] gi|317111065|gb|ADU93557.1| ATP-dependent DNA helicase RecG [Geobacillus sp. Y412MC52] Length = 682 Score = 363 bits (933), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 231/670 (34%), Positives = 377/670 (56%), Gaps = 37/670 (5%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G++ + L+ I G A +LL Y P + D + + ++ + E VT Sbjct: 8 PVTAVKGIGEETAAALADI---GIAT---IGELLAYAPYRY-DDYEQKDLAAVRHEEKVT 60 Query: 72 ITG--YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G Y + ++ +K+ + IT++ F R LK +TV GK Sbjct: 61 VEGKVYSAPLLTYYGKKKSRLSFRMLADRYLITVVCFNRP--YLKEKIALNETVTVIGKW 118 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNF------PLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183 + + I N+ ++ F IE VYS+ + L+V ++++ A + Sbjct: 119 DRHRQTI----------NAYELRFGPAPETTGIEPVYSVRSPLTVKTMRRLMKAAFEQFG 168 Query: 184 V-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 +P+ + L + EA +H PR ++ AR RL Y+E L Q+ + Sbjct: 169 EHIPDPLPPALRRAYRLVDKQEALRALHFPRTREELHQ---ARRRLIYEEFLLYQLKMQA 225 Query: 243 MRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R+ + E G+ + + L +PF T +Q I +IL DM +M R+LQGD Sbjct: 226 LRRLMRDERRGVVHSFSEERLSSFLSGLPFVLTNAQRRVIGEILADMRSPRQMNRLLQGD 285 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VA +A+ AA +G Q +M P ILA+QH + + +T + + ++T ++ Sbjct: 286 VGSGKTVVAAVALYAAALSGFQGALMVPTEILAEQHARSLAELFADTDVTIALLTSSVKG 345 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 R+ L + G I++GTHAL Q+ +Q+ +L LVI DEQHRFGV+QR L +K AP Sbjct: 346 KQRKAVLAELEEGTIDIVVGTHALIQEGVQFRRLGLVITDEQHRFGVEQRRVLREKGHAP 405 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPRTL +T+ GD+D+S + E PAGRK ++T + ++ V++ ++ L Sbjct: 406 DVLMMTATPIPRTLAITAFGDMDVSVLDEMPAGRKKVETYWVKHHQFSRVLDFIEKELRR 465 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKN 539 G +AY ICP IEE + + ++ ++ + L ++ I ++HGR+S +KE VM +F Sbjct: 466 GHQAYVICPLIEESDKLDVQNAIDVHSQLVHYYRGKYEIGLMHGRLSADEKERVMRAFSE 525 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 +L++TTV+EVG++V +A++++I +AE FGLAQLHQLRGRVGRG+ S CIL+ P Sbjct: 526 NRIHVLVSTTVVEVGVNVPNATVMVIYDAERFGLAQLHQLRGRVGRGDAQSYCILIADPK 585 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEI 658 S+ R+ ++ T DGF++AE+DL+ R G+ G KQSG+P+F P +HD +LE+ Sbjct: 586 -SEVGKERMRIMTETADGFVLAEKDLELRGPGDFFGTKQSGLPEFRYGDP-VHDYRILEV 643 Query: 659 ARKDAKHILT 668 AR+DA +++ Sbjct: 644 ARRDAAKLVS 653 >gi|56419721|ref|YP_147039.1| ATP-dependent DNA helicase RecG [Geobacillus kaustophilus HTA426] gi|56379563|dbj|BAD75471.1| ATP-dependent DNA helicase [Geobacillus kaustophilus HTA426] Length = 682 Score = 363 bits (933), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 230/670 (34%), Positives = 375/670 (55%), Gaps = 37/670 (5%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +G+G++ + L+ I E LL Y P + D + + ++ + E VT Sbjct: 8 PVTAVKGIGEETAAALADI-GIATVGE-----LLAYAPYRY-DDYEQKDLAAVRHEEKVT 60 Query: 72 ITG--YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + G Y + ++ +K+ + IT++ F R LK +TV GK Sbjct: 61 VEGKVYSAPLLTYYGKKKSRLSFRMLADRYLITVVCFNRP--YLKEKIALNETVTVIGKW 118 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNF------PLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183 + + I N+ ++ F IE VYS+ + L+V ++++ A + Sbjct: 119 DRHRQTI----------NAYELRFGPAPETTGIEPVYSVRSPLTVKTMRRLMKAAFEQFG 168 Query: 184 V-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 +P+ + L + EA +H PR ++ AR RL Y+E L Q+ + Sbjct: 169 EHIPDPLPPALRRAYRLVDKQEALRALHFPRTREELHQ---ARRRLIYEEFLLYQLKMQA 225 Query: 243 MRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +R+ + E G+ + + L +PF T +Q I +IL DM +M R+LQGD Sbjct: 226 LRRLMRDERRGVVHSFSEERLSSFLSGLPFVLTNAQRRVIGEILADMRSPRQMNRLLQGD 285 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VA +A+ AA +G Q +M P ILA+QH + + +T + + ++T ++ Sbjct: 286 VGSGKTVVAAVALYAAALSGFQGALMVPTEILAEQHARSLAELFADTDVTIALLTSSVKG 345 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 R+ L + G I++GTHAL Q+ +Q+ +L LVI DEQHRFGV+QR L +K AP Sbjct: 346 KQRKAVLAELEEGTIDIVVGTHALIQEGVQFRRLGLVITDEQHRFGVEQRRVLREKGHAP 405 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPRTL +T+ GD+D+S + E PAGRK ++T + ++ V++ ++ L Sbjct: 406 DVLMMTATPIPRTLAITAFGDMDVSVLDEMPAGRKKVETYWVKHHQFSRVLDFIEKELRR 465 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKN 539 G +AY ICP IEE + + ++ ++ + L ++ I ++HGR+S +KE VM +F Sbjct: 466 GHQAYVICPLIEESDKLDVQNAIDVHSQLVHYYRGKYEIGLMHGRLSADEKERVMRAFSE 525 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 +L++TTV+EVG++V +A++++I +AE FGLAQLHQLRGRVGRG+ S CIL+ P Sbjct: 526 NRIHVLVSTTVVEVGVNVPNATVMVIYDAERFGLAQLHQLRGRVGRGDAQSYCILIADPK 585 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEI 658 S+ R+ ++ T DGF++AE+DL+ R G+ G KQSG+P+F P +HD +LE+ Sbjct: 586 -SEVGKERMRIMTETADGFVLAEKDLELRGPGDFFGTKQSGLPEFRYGDP-VHDYRILEV 643 Query: 659 ARKDAKHILT 668 AR+DA +++ Sbjct: 644 ARRDAAKLVS 653 >gi|332293535|ref|YP_004432144.1| ATP-dependent DNA helicase RecG [Krokinobacter diaphorus 4H-3-7-5] gi|332171621|gb|AEE20876.1| ATP-dependent DNA helicase RecG [Krokinobacter diaphorus 4H-3-7-5] Length = 700 Score = 363 bits (933), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 247/704 (35%), Positives = 369/704 (52%), Gaps = 39/704 (5%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 M P+FL P+ +GVG + L + F DL+ P+ +ID+ K Sbjct: 1 MNPTFLQ---TPIDYLKGVGPNRADLLRSELGIHT-----FQDLMHLFPNRYIDKTQYYK 52 Query: 61 ISEISEERI-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I E+ V I G S + + RR D TG++ L++F R + ++ Sbjct: 53 IGELERNNADVQIIGKFSGLKMIEGKGRRLVATF-KDETGQMELVWF-RGHKWIRESIKL 110 Query: 120 GRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 + GK M HP + + + ++ VY LS +V Sbjct: 111 NTPYVIFGKCNYYNGNFSMPHPEMELLADHEKSIKSAMQPVYPSTEKLSNRGITNKVVNG 170 Query: 179 LSRLPVLP------EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232 + + L E + K +L + EA +H P+ E + A+ RL ++E Sbjct: 171 VMQTLFLECKNHLFESLSKPILTELKLMPKREALLNVHFPQSQ---EHLARAQYRLKFEE 227 Query: 233 LLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQ 290 Q+ L K +I G P G + +PF T +Q+ +K+I D+ Sbjct: 228 FFYIQLQLAFKNVNHKTKIKGYPFEKIGPNFTTFYNDHLPFELTGAQKRVLKEIRHDLGT 287 Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350 +M R+LQGDVGSGKT+VAL++M A++ G QA +MAP ILA QHY +K+ + Sbjct: 288 NAQMNRLLQGDVGSGKTIVALMSMLMALDNGFQACLMAPTAILAVQHYHGLKELCKELNT 347 Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410 + ++ G+ + RR E++ +G+ +I+IGTHAL +D +++ L L ++DEQHRFGV+Q Sbjct: 348 SISLLQGSTKTSKRRIIHEQLENGELNILIGTHALLEDKVKFKNLGLAVIDEQHRFGVKQ 407 Query: 411 RLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469 R KL K PHVL+MTATPIPRTL +T GD+D+S I E P GRK IKTV +R D Sbjct: 408 RSKLWHKNEYPPHVLVMTATPIPRTLAMTVYGDLDVSVIDELPPGRKSIKTV----HRYD 463 Query: 470 EVIERLKVV------LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAI 520 RLKV ++ G++ Y + P I+E + +++ +++ + S+ F I+I Sbjct: 464 S--NRLKVFKFIRDEIALGRQVYIVYPLIQESEAMDYKDLMDGYESISREFPMPKYQISI 521 Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580 +HG+M DKE M+ F G ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLR Sbjct: 522 VHGQMKPADKEIEMNRFIKGETQIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLR 581 Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 GRVGRG E S CIL+ LS +S RL + T DGF IAE DLK R G+I G +QSG Sbjct: 582 GRVGRGAEQSYCILMTSHKLSSDSKVRLETMTRTNDGFEIAEVDLKLRGPGDITGTQQSG 641 Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684 IA + +L++AR A ++ DP Q IR + Sbjct: 642 ALNLKIADIIRDNDILKVARSYAWAVVKDDPTFKKEENQIIRFM 685 >gi|307276670|ref|ZP_07557788.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX2134] gi|306506780|gb|EFM75932.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX2134] gi|327536226|gb|AEA95060.1| DNA helicase RecG [Enterococcus faecalis OG1RF] Length = 678 Score = 363 bits (933), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 218/628 (34%), Positives = 358/628 (57%), Gaps = 20/628 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98 DLL Y+P + D + +SEI ++ VT+ G + S + +K R ++++ Sbjct: 31 DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 I + FF + LK+ +I V GK + + + +++D P+ Sbjct: 90 --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 + V L + E S ++ E + DLL+K EA +H P ++ Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LVEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE- 200 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277 + A+ R+ ++E Q+ + ++KQ K E G+ + + + + +PF T +Q Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAVQYDVDRLKTFTQGLPFELTGAQ 258 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + +I +D+ M R+LQGDVGSGKT+VA IA+ A + AG Q +M P ILAQQH Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 E +++ ++ ++TG+ RR LE +A+G+ I++GTHAL Q + +++L L Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI DEQHRFGV QR L +K P VL MTATPIPRTL +T+ G++D+S I E PAGR P Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516 I+T I ++D V+E ++ L+ G +AY ICP IEE + + ++ E F + ++ Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + ++HG+M + +K+ +M FK+ +LL++TTVIEVG++V +A++++I +A+ FGLAQ Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG S CIL+ +P ++ R+ ++ T +GF+++E DL+ R GE+ G Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663 +QSG+P+F + ++LE+AR++A Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645 >gi|319401480|gb|EFV89690.1| ATP-dependent DNA helicase RecG [Staphylococcus epidermidis FRI909] Length = 682 Score = 363 bits (933), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 222/659 (33%), Positives = 362/659 (54%), Gaps = 20/659 (3%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L +G+G K L ++ N DL+ Y P+ + D +++ ++ VT+ Sbjct: 13 LDKIKGIGPKRLALLEEL------NIKSVEDLVLYLPTRYEDNTV-IDLNQADDQATVTV 65 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G + + R K+ ++ I + + LK +T+ GK + Sbjct: 66 QGEVYSSPTVAFFGRNKSKLTVHLMINHIAVKCVFFNQPYLKKKLELNSIVTIKGKWNRN 125 Query: 133 KNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191 K I + + IF N Q + +E VY + G+ + I +ALS + + EW+ Sbjct: 126 KQEI---NGNRIFFNDQKNQEDAHLEPVYRVKEGIKQKQLRDNIRQALSDVTI-HEWLTD 181 Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKE 250 DL +K ++A +H+P ++ AR A+ EL ++ + L R + + Sbjct: 182 DLREKYKLETLAYTIQTLHHPIDKQNL---LRARRTYAFTELFMFELRMQWLNRLEKTSD 238 Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310 I IN + ++ + ++PF T +Q+ ++ +I +D+ RM R+LQGDVGSGKT+VA Sbjct: 239 EAIEINYDINKVKQFIDSLPFELTDAQKVSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVA 298 Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370 I M A AG Q+ +M P ILA+QH E + + NT + V ++TG++ RR LE+ Sbjct: 299 AICMYALKTAGYQSALMVPTEILAEQHAESLMQLFGNT-MNVALLTGSVKGKKRRLLLEQ 357 Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430 + +G +IGTHAL QD + + + LVI DEQHRFGV QR L +K +VL MTATP Sbjct: 358 LENGTIDCLIGTHALIQDDVVFNNVGLVITDEQHRFGVNQRQILREKGAMTNVLFMTATP 417 Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490 IPRTL ++ G++D+S I + P GRKPIKT + D+V+ ++ L +G++AY ICP Sbjct: 418 IPRTLAISVFGEMDVSSIKQLPKGRKPIKTSWAKHEQYDQVLAQMSNELKKGRQAYVICP 477 Query: 491 QIEEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548 IE + + ++VV + SL + + ++HG+M+ DK+ VM F +L++T Sbjct: 478 LIESSEHLEDVQNVVALYESLQSDYGNEKVGLLHGKMTAEDKDQVMQKFSEHEIDILVST 537 Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608 TV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E S C+L+ P ++ R+ Sbjct: 538 TVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIERM 596 Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 +++ T DGF ++E DL+ R G+ G+KQSG+P FL+A +LE+AR +A ++ Sbjct: 597 TIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANIVEDYRMLEVARDEAAELI 655 >gi|290889928|ref|ZP_06553015.1| hypothetical protein AWRIB429_0405 [Oenococcus oeni AWRIB429] gi|290480538|gb|EFD89175.1| hypothetical protein AWRIB429_0405 [Oenococcus oeni AWRIB429] Length = 676 Score = 363 bits (933), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 237/697 (34%), Positives = 385/697 (55%), Gaps = 38/697 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 LF ++ GVG+K + L + I+N DLL Y+P + D R S+ + Sbjct: 3 LFDSITELSGVGQKRAEILKQLGILNIE--------DLLTYYPFRYDDLESRLP-SQTDD 53 Query: 67 ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122 + VT G +S S F +K R +++L+ G I++ FF LK G++ Sbjct: 54 GQKVTFKGMVSSQPTISRFGYKKSRIAFRLLI--GHDNISVSFF--NQPWLKEQIEIGKE 109 Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182 + + G + + I H D + A+Y + +++I A ++ Sbjct: 110 MAIFGTYDAVHEAL---KGQRIIHAENDS----LAAIYPSNQAIHQKTIQQLIENAYAKY 162 Query: 183 P-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 + + I + L+ S + + +H P A++ + AR A++E Q+ L Sbjct: 163 ADQINDIIPRRLMLAYRLLSRKKQIHDMHFPDSAENAKL---ARRSAAFEEFFIFQMRLQ 219 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 LMR K G I +I + +P+S T +Q+ I++IL D+ + M R+LQGD Sbjct: 220 LMRISAGKNRGREIEYNSEILNDFIAKLPYSLTDAQKKVIQEILLDLKRPIHMNRLLQGD 279 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT--QIIVEIITGNM 359 VGSGKT+VA IAM A AG QA IM P ILAQQH + Q+ + +E++T + Sbjct: 280 VGSGKTVVAAIAMLACYSAGLQAAIMVPTEILAQQHAINLSNLYQSAGLNLRIELLTSGL 339 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A RR+ L + G+ I +GTHAL Q + +Y L L ++DEQHRFGV+QR +L ++ Sbjct: 340 KAAARRQILADLESGEIDIAVGTHALIQADVHFYNLGLAVIDEQHRFGVKQRARLREQGQ 399 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 P +L MTATPIPRTL +T+ G++D+S I + P GR+PI T + N+ D V + +K L Sbjct: 400 NPDILAMTATPIPRTLAITAYGEMDVSTIDQLPNGRRPIITKWVKSNQFDNVFDWVKTQL 459 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538 + G + Y + P IEE + + ++ V ++ L E I ++HGR+++ +K+ V++ F Sbjct: 460 AAGAQVYVVTPLIEESETLDVQNAVLIYDRLKEELKPYRIGLLHGRLTNDEKQQVINDFS 519 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 ++L+ TTVIEVG+D+ +A+I++I +A+ FG+AQLHQLRGRVGRG++ S IL+ P Sbjct: 520 TNRVQVLVTTTVIEVGVDIKNATIMVILDADRFGIAQLHQLRGRVGRGKKQSYAILVSDP 579 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLE 657 ++ R+ + +T DGF +AE+DLK R G+++GIKQ+GMP+F + P +HD ++E Sbjct: 580 K-TQYGIDRMEAIVSTNDGFALAEKDLKLRGPGDVIGIKQAGMPEFNVGDP-IHDLKMME 637 Query: 658 IARKDAKHILTQ-DPDLTSVRGQSIRIL-LYLYQYNE 692 A++ A I +Q + D + ++ L L +Y+Y + Sbjct: 638 TAQQSAIEITSQSNWDADKENAELVKYLSLTMYRYKD 674 >gi|227432482|ref|ZP_03914468.1| ATP-dependent DNA helicase RecG [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351753|gb|EEJ41993.1| ATP-dependent DNA helicase RecG [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 676 Score = 363 bits (933), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 202/467 (43%), Positives = 291/467 (62%), Gaps = 8/467 (1%) Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268 I N D E AR +A++E Q+ L L++ K G IN + K K Sbjct: 187 IENMHFPADMEQAKLARRSIAFEEFFIFQMRLQLLKLADKNFSGEGINYDSKALNKFEAG 246 Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 +PF+ T +Q+ + +IL+D + M R+LQGDVGSGKT+VA IA+ A V AG QA +MA Sbjct: 247 LPFTLTVAQQKVVSEILKDQKRPVHMNRLLQGDVGSGKTVVAAIALYAVVTAGMQAALMA 306 Query: 329 PIGILAQQHYEFIKKYTQNT--QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 P ILAQQH + + + I +E++T M A RR+ LE +A G I++GTHAL Sbjct: 307 PTEILAQQHAINLASMFEKSGVDIRIELLTSGMKAAARRQLLEDLADGTIDILVGTHALL 366 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 Q ++++ L L ++DEQHRFGV QR KL + P +L MTATPIPRTL +T+ G++D+S Sbjct: 367 QPDVKFHHLGLAVIDEQHRFGVNQRAKLRENGVNPDILAMTATPIPRTLSITAYGEMDVS 426 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 I + P GRK I+T I N+ID I LK LSEG +AY + P IEE + ++ Sbjct: 427 IIDQLPNGRKQIQTRKISHNQIDSAINFLKQQLSEGAQAYVVTPLIEESAALDVQNAQAM 486 Query: 507 FNSLH-EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + +L E +I ++HGR+S+ +K+++M FK ++L+ATTVIEVG+DV +ASI++I Sbjct: 487 YEALQLELPNDTIGLLHGRLSNDEKKALMADFKRNKIQVLVATTVIEVGVDVPNASIMLI 546 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEE 623 +A+ FGLAQLHQLRGRVGRG S IL+ P K Y RL + T DGFL+A++ Sbjct: 547 MDADRFGLAQLHQLRGRVGRGTRQSYTILVADP---KTDYGRARLDAMVETTDGFLLAQK 603 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670 DL+ R G+ILG KQSG+P+F + P ++E+A+++A +++ D Sbjct: 604 DLELRGSGDILGTKQSGVPEFAVGDPIKDLKMMEVAQQEAISMVSTD 650 >gi|168217017|ref|ZP_02642642.1| ATP-dependent DNA helicase RecG [Clostridium perfringens NCTC 8239] gi|182380876|gb|EDT78355.1| ATP-dependent DNA helicase RecG [Clostridium perfringens NCTC 8239] Length = 690 Score = 363 bits (933), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 245/678 (36%), Positives = 377/678 (55%), Gaps = 46/678 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 ++ + +GVG K L+K+ +DLL Y P R Y +IS Sbjct: 16 IYDDIGLVKGVGPKLKERLNKV------GIFTVLDLLLYFP-----RDYEFLNDDIS--- 61 Query: 69 IVTITGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEML---------KNVF 117 + G S + K + Y I +G T+ F Y +++ K F Sbjct: 62 ---LNGDTSDEKAILKCKVQSYGSSIRTRNGKTLTTINFTYNNLKVIGKWFNQPYIKRNF 118 Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK KK+ N + +++P ++ N I +Y+L GL+ + K+I E Sbjct: 119 ILGNEYNLMGKFKKVNNTLEVINP---LIPCKEANKSEILPIYTLKNGLTNKILVKLINE 175 Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237 L + ++ E + ++++K S+ +A IH P + + A RL + EL Sbjct: 176 ILKNM-IIKENLPDEIVKKYKLISLDKAIRSIHFPAGRGELQ---SAINRLKFQELFTYS 231 Query: 238 IALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 + +++M+ KKE GI + + + + ++P++ T +Q +++IL D + M R Sbjct: 232 LKIIMMKAHIKKENSGISFKM-SPLLKDLKESLPYTLTNAQSRTLREILLDQKRNIAMNR 290 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 ++QGDVGSGKTLVALI+M G Q V+MAP ILA QHY KKY + +E++T Sbjct: 291 LVQGDVGSGKTLVALISMFNVYMNGYQTVLMAPTEILANQHYAEAKKYLDKFGVDIELLT 350 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G+ + +++ E+IA G+ ++IGTHAL QD ++ L LV+ DEQHRFGV+QR +L Sbjct: 351 GSTKEKEKKRIKEKIASGKEIMLIGTHALIQDDVELNNLGLVVTDEQHRFGVEQRSRLIN 410 Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERL 475 K VL+MTATPIPRTL L D+DIS I E P GRKPI T+++ +N R+ L Sbjct: 411 KNKRADVLVMTATPIPRTLSLYLYSDLDISIIDELPPGRKPIDTMLVDMNQRMKAYNFAL 470 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESV 533 K V +G++ Y + P IEE ++ N SV + + L I I+HG+M+ DK+ + Sbjct: 471 KEV-EKGRQFYIVSPLIEENEKLNLNSVEKIYEELKNGIFKDVRIEILHGKMAGKDKDKI 529 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 +++FKNG K +I+TTVIEVG++V +++++IIENAE FGLAQLHQLRGRVGRGE S CI Sbjct: 530 INTFKNGEIKGIISTTVIEVGVNVPNSTMMIIENAERFGLAQLHQLRGRVGRGEHKSYCI 589 Query: 594 LLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 L+ + +KN T R+ ++ + DGF IAEEDLK R GE+ G++Q G F++A Sbjct: 590 LIAN---TKNDITRRRMEIMTESSDGFYIAEEDLKLRGAGEVFGMRQHGDEGFILANVVD 646 Query: 652 HDSLLEIARKDAKHILTQ 669 ++L+ A +AK I+ Sbjct: 647 DINILKCANHEAKLIVNN 664 >gi|257467419|ref|ZP_05631730.1| ATP-dependent DNA helicase recG [Fusobacterium gonidiaformans ATCC 25563] gi|315918543|ref|ZP_07914783.1| ATP-dependent DNA helicase [Fusobacterium gonidiaformans ATCC 25563] gi|313692418|gb|EFS29253.1| ATP-dependent DNA helicase [Fusobacterium gonidiaformans ATCC 25563] Length = 679 Score = 363 bits (933), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 224/604 (37%), Positives = 351/604 (58%), Gaps = 12/604 (1%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ-KRRPYKILLNDGTGEI 101 DLL+Y P ++ +R KI+E+ E I + S + R+ K DG+G + Sbjct: 30 DLLYYFPRAYDNRSNIKKIAELRMEEYAVIHAKLLHVYSVPTKLGRKMTKATATDGSGFL 89 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161 +++F LK + G +K+ M +P + Q + ++ +YS Sbjct: 90 EIVWF--GMPYLKKSLKLQEEYIFVGTVKRSMGAFQMTNPEFKLSKGQKMRGEIL-PIYS 146 Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221 LS + +K + E L +L E I K++ QK + +A + IH P K E Sbjct: 147 SHKNLSQNRLRKYLKEILFENSLLSENIPKEICQKYNILGRNQALSEIHFPSSEKILE-- 204 Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK--IAQKILRNIPFSPTKSQES 279 A+ R A +ELL ++ +L R ++EGK + ++ L ++PF TK+Q+ Sbjct: 205 -EAKRRFAIEELLIIEMGILKNRFLTDALTQSFYHLEGKKTLVKQYLSSLPFQLTKAQKK 263 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 I +I +D+ Q + R++QGDVGSGKT+VA++ + +E G Q +MAP ILA QHY Sbjct: 264 VITEIYKDLEQGRIVNRLVQGDVGSGKTMVAMVLLLYMIENGYQGALMAPTEILAIQHYL 323 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 I Q + VE++TG++ RRK L+ + G ++IGTHAL ++ +++++L ++ Sbjct: 324 GIYSKMQELGLRVELLTGSIRGKKRRKLLDDLKEGNIDLLIGTHALLEEEVRFHQLGFIV 383 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 +DEQHRFGV QR KL +K ++L+MTATPIPR+L L+ GD+D+S + E P GR PIK Sbjct: 384 IDEQHRFGVLQRKKLREKGILTNLLVMTATPIPRSLALSIYGDLDVSILDELPPGRSPIK 443 Query: 460 TVIIPINR-IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517 T I ++++ ++ LS+GK+AY++ P IEE ++ S++E + E + Sbjct: 444 TKWISTEEDMEKMYAFIRKQLSQGKQAYFVAPLIEESEKLLLSSILEVEEEVKEKLPNYK 503 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 IA++HGRM +I+K+ +M FK +L++TTVIEVGIDV +A I+ I NAE FGL+ LH Sbjct: 504 IALLHGRMKNIEKDEIMQRFKQREIDILVSTTVIEVGIDVPNAVIMTILNAERFGLSALH 563 Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637 QLRGRVGRG++ S C L+ ++ S RL +++ T+DGF+IAEEDLK R GEI G++ Sbjct: 564 QLRGRVGRGKDASFCFLISKTQ-NETSKQRLEIMEATQDGFIIAEEDLKMRNAGEIFGLR 622 Query: 638 QSGM 641 QSG+ Sbjct: 623 QSGL 626 >gi|149011439|ref|ZP_01832686.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP19-BS75] gi|147764429|gb|EDK71360.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP19-BS75] Length = 455 Score = 363 bits (932), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 189/428 (44%), Positives = 287/428 (67%), Gaps = 10/428 (2%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G+ +N + + ++PF+ T++QE ++++IL DM + M R+LQGDVGSGKT+VA Sbjct: 16 GLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSGKTVVAG 75 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 +AM AAV AG QA +M P ILA+QH+E ++ N ++ ++TG++ A +R+ LE I Sbjct: 76 LAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKREVLETI 133 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 A G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR L +K P VL+MTATPI Sbjct: 134 AKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLMMTATPI 193 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491 PRTL +T+ GD+D+S I + PAGRKPI T I ++ +V+ L+ + +G +AY I P Sbjct: 194 PRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQAYVISPL 253 Query: 492 IEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549 IEE + + ++ + L HF + +A++HGRM +K+ +M FK +L++TT Sbjct: 254 IEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTT 313 Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609 VIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + + R+ Sbjct: 314 VIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDSGKDRMR 372 Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT- 668 ++ T +GF++AEEDLK R GEI G +QSG+P+F +A +LE ARK A +I + Sbjct: 373 IMTETTNGFILAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVASYISSI 432 Query: 669 ----QDPD 672 +DP+ Sbjct: 433 EAWQEDPE 440 >gi|83589774|ref|YP_429783.1| ATP-dependent DNA helicase RecG [Moorella thermoacetica ATCC 39073] gi|83572688|gb|ABC19240.1| ATP-dependent DNA helicase RecG [Moorella thermoacetica ATCC 39073] Length = 680 Score = 363 bits (932), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 235/668 (35%), Positives = 353/668 (52%), Gaps = 24/668 (3%) Query: 12 PLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69 P++T + VG + + LS+ I G DLL++ P + DR ++ ++ + Sbjct: 6 PVATLKYVGHQRAARLSRLGIQTVG--------DLLWHFPRRYEDRRQLKDLAAVAPGEV 57 Query: 70 VTITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 VT+ I +++ R R + L+ G ++F LK G + +TGK Sbjct: 58 VTVQVTIRAWEEREVRPRLRLIRALIQGRQGTGFAVWF--NQPYLKRQMPPGTGVILTGK 115 Query: 129 IKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-L 185 ++ R + Y + ++ I Y+L GLS + +I AL + L Sbjct: 116 VRYRDYRPEIQVSDYEALGEGDPGLHTGRIVPFYALTAGLSQRWLRLVIHLALEAVAGDL 175 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR- 244 PE + L ++ +A IH P A AR RL Y+ELL ++ L L R Sbjct: 176 PEVLPLSLCRRYRLIPRLQALKYIHFPPDAAGLHQ---ARRRLKYEELLIWELGLNLHRV 232 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 +Q + GI + +++ ++PF T +Q A+ +IL DM M R+LQGDVGS Sbjct: 233 QQEQGRQGIAHTPANNLVNRLVDSLPFKLTSAQARALAEILADMEAPRPMARLLQGDVGS 292 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKT+VA AM AV G QA +MAP +LA+QH + + ++ V +TG+ P+ R Sbjct: 293 GKTVVAAAAMVKAVAGGWQAALMAPTEVLAEQHGRTLGQLLAPLRLPVVTLTGSTPRTER 352 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424 L +A GQ +++GTHAL QD + + L LV++DEQHRFGV QR L K P +L Sbjct: 353 ENILAGLASGQLPLVVGTHALIQDDVSFKSLGLVVIDEQHRFGVDQRAALQTKGECPDLL 412 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 +MTATPIPRTL L GD+DIS + E P GR+P+ T +I + ++ + G + Sbjct: 413 VMTATPIPRTLALAIYGDLDISVLDELPPGRQPVATYVITEKQRPRAYRLIEREIRAGHQ 472 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542 AY ICP I+ + L E + ++HGR+ +KE VM++F+ G Sbjct: 473 AYVICPVIDANDGVAVEAATAMARKLQEEVFPGYPVGLVHGRLRPAEKEEVMNAFREGKI 532 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 +L+ATTV+EVG+DV +A++++IE AE GLAQLHQLRGRVGRG + C L+ S+ Sbjct: 533 AILVATTVVEVGVDVPNATVMLIEGAERLGLAQLHQLRGRVGRGTAAAYCFLVTRG--SQ 590 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662 + RL++L DGF IAE DL+ R GE G +Q G+P+F +AQ +LE AR+D Sbjct: 591 AARERLAILTTNRDGFAIAEADLRLRGPGEFFGTRQHGLPEFHLAQLPGDSHILEQARQD 650 Query: 663 AKHILTQD 670 A+ I Q+ Sbjct: 651 AREICRQE 658 >gi|315646187|ref|ZP_07899307.1| ATP-dependent DNA helicase RecG [Paenibacillus vortex V453] gi|315278386|gb|EFU41702.1| ATP-dependent DNA helicase RecG [Paenibacillus vortex V453] Length = 683 Score = 363 bits (932), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 222/649 (34%), Positives = 361/649 (55%), Gaps = 17/649 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL---QKRRPYKILLNDGTG 99 DLL Y+P + D R +SE+ + +TI I+ Q + R K+L + Sbjct: 34 DLLEYYPFRYEDYRLR-SLSEVKDGDRITIQAKIASVPVLQRYGGKSRLTCKMLAENWM- 91 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159 T +F R LK+ GR+I +TGK + + ++ + F + ++ V Sbjct: 92 -FTATWFNR--HFLKDQLTAGREIVLTGKWDQRRMQLTVSESE--FPDKGAFRSGTLQPV 146 Query: 160 YSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 YS+ ++ +K + +AL + ++PE + + LL+K A IH P +++ Sbjct: 147 YSIGGKITQSWIRKTMGQALEQYGEMIPEILPQFLLRKYDLMPRKGAILTIHQPVDSREG 206 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277 + R R+ Y+EL Q+ + R + + G+ + ++ +R+ PF T +Q Sbjct: 207 Q---EGRRRMVYEELFLFQLKMQAFRALNRGRMDGVVHTADNATIREFVRSFPFELTDAQ 263 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + +IL DM M R+LQGDVGSGKT+VA IA+ V +G Q +M P ILA+QH Sbjct: 264 KKVELEILHDMRSPYCMNRLLQGDVGSGKTIVAAIALFTTVRSGFQGALMVPTEILAEQH 323 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 ++K + I V ++TG++ R+ L + G +++GTHAL QD + + +L L Sbjct: 324 MRSLQKLFEPFGITVGLLTGSVTGKKRKDLLASLQMGLIDVVVGTHALIQDDVYFRELGL 383 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 V+ DEQHRFGV QR L +K P VL MTATPIPRTL +T+ GD+D+S ++E+P GR P Sbjct: 384 VVTDEQHRFGVNQRSVLRRKGYNPDVLTMTATPIPRTLAITAFGDMDVSTLSERPKGRIP 443 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516 I T + ++ V+ + + +G++AY I P IEE + + ++ ++ + + F Sbjct: 444 ITTYWVKHELMERVLGFISREVDQGRQAYLIAPLIEESDKLDVQNAIDLHVQMQQAFPKY 503 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 ++ ++HGRM+ +K+ VM F + +LLI+TTV+EVG+DV +A+++II +A+ FGL+QL Sbjct: 504 AVGLLHGRMTPAEKDEVMRQFYSNEVQLLISTTVVEVGVDVPNATLMIIMDADRFGLSQL 563 Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636 HQLRGRVGRG+ S C+L+ P S+ R+ V+ TEDGF ++ DL+ R G+ G Sbjct: 564 HQLRGRVGRGQHASYCVLVADPK-SEVGQERMQVMTETEDGFEVSRRDLELRGPGDFFGT 622 Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685 KQSG+P+F +A ++E AR DA +++ TS + +R L Sbjct: 623 KQSGLPEFRLADMVADFKVVEEARGDAAALVSDTAFWTSPEYEPLREFL 671 >gi|269123878|ref|YP_003306455.1| ATP-dependent DNA helicase RecG [Streptobacillus moniliformis DSM 12112] gi|268315204|gb|ACZ01578.1| ATP-dependent DNA helicase RecG [Streptobacillus moniliformis DSM 12112] Length = 689 Score = 363 bits (932), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 225/614 (36%), Positives = 364/614 (59%), Gaps = 21/614 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DL+++ P ++ ++ ISE+ + V I G + ++ K++ K+L DG G I Sbjct: 39 DLVYFFPRTYENKAKHKPISELIDGENVIIEGKVLIINNAFFGKKKLIKVLFTDGEGLIE 98 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-----IE 157 L++F + + V G ++ +TGKI+K +N + +++P Y NS + N L ++ Sbjct: 99 LVWF--NSPYILRVLEVGMELRITGKIRKSRN-LQIINPSYSKINSSNRNIVLNEEDKLD 155 Query: 158 AVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216 +VYSL +G+ KKI+ E L + L + E + + + + S EA IH PR Sbjct: 156 SVYSLSSGIDQKNMKKIVEEVLKKYLFLFEENLPQKYIVENKLISRTEAIANIHFPRNNF 215 Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274 +E A++R+ ++E L ++ +L R + K ++ + +K + + F T Sbjct: 216 MYE---EAKKRILFEEALILEMKILKNRYNENIKNYNLYFLDDNKDLVKKYVSGLSFELT 272 Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334 K Q+ I +I ++++ + R++QGDVGSGKT+++LI + E Q VIMAP ILA Sbjct: 273 KDQKKIIAEIYKELNNGKIINRLIQGDVGSGKTIISLILLLYMAENNYQGVIMAPTEILA 332 Query: 335 QQHY-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 QHY E +K++ + I VE++TG+ + + + + +G +I IGTH+L +D++++ Sbjct: 333 TQHYLEVVKEFDK-LNIRVELLTGSTRAKKKEEIYKNVENGNINISIGTHSLLEDNLKFN 391 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L L+I+DEQH+FGV QR K+ K ++++MTATPIPR+L LT GD+D+S +T P Sbjct: 392 NLGLIIIDEQHKFGVDQRNKIRDKGIYSNLIVMTATPIPRSLALTIYGDLDVSLLTTMPL 451 Query: 454 GRKPIKTVIIPINRIDE--VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511 GRKPIKT I N+ +E + E + + EG++ Y + P I + + N S VE + Sbjct: 452 GRKPIKTKWIK-NKEEENSMYEFIDKKIKEGRQVYVVSPLIVQSDKLNISSAVETYEKYC 510 Query: 512 EHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 E F ++ ++HG++ +KE++M+ FK G +L++TTV+EVG++V ++SII+I N+E Sbjct: 511 EKFPQYTVGLLHGKIKSKEKENIMNEFKEGRIDILVSTTVVEVGVNVPNSSIIVILNSER 570 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630 FGL+ LHQLRGRVGRGE S C LL ++ S RL V++ T DGF IAEEDLK R Sbjct: 571 FGLSSLHQLRGRVGRGEHSSYCFLLSETQ-NEISQKRLQVMEETLDGFKIAEEDLKLRDT 629 Query: 631 GEILGIKQSGMPKF 644 GEI GIKQSG+ + Sbjct: 630 GEIFGIKQSGISEL 643 >gi|293380322|ref|ZP_06626396.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus 214-1] gi|290923137|gb|EFE00066.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus 214-1] Length = 678 Score = 363 bits (932), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 223/686 (32%), Positives = 380/686 (55%), Gaps = 28/686 (4%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 N LFAP++ +GVG K + L G+ DLLFY P + + P + +I + Sbjct: 4 NALFAPVTDLKGVGTKTTAEL------GSLGIYSIYDLLFYFPFRYDELQTLP-LDQIMD 56 Query: 67 ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122 + V + G ++ S F +K R +K+ ++ ++ ++ F+ + LKN G++ Sbjct: 57 GQKVMLKGIVATEAFVSRFGYKKTRLSFKMRIDH---DVIMVNFFNQP-WLKNKIEIGQE 112 Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + + GK + + ++ D P+ + VDL I + + + Sbjct: 113 VAIYGKYNVARQSLTAFK--FVAAKENDSGMAPIYPVNRHVKQKKLVDLINVAIDDFIDQ 170 Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 + ++PE + ++ K I + +H+P+ + + E A+ + E ++ L Sbjct: 171 VQDIVPEKLRQEYRLLKDQVIIEK----MHHPKNSHEAEL---AKRSAIFREFFIFELQL 223 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L+ + K++G + ++ +++PF + Q+ + +I DM +M R+LQG Sbjct: 224 ALLTRNDGKQMGYAKKYDLTEIAQLTKSLPFELSDDQKHVVNEIFADMHSDGQMRRLLQG 283 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA+ A+ AA+ AG QA +M P ILA QH++ I + + + V ++TGN Sbjct: 284 DVGSGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTK 343 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 RR+ + G +++IGTHAL QDS+ + KL LVI+DEQHRFGV QR L K Sbjct: 344 TLERREIYRELTDGTINVVIGTHALIQDSVIFKKLGLVIIDEQHRFGVGQRQALINKGDQ 403 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 P +L MTATPIPRTL LT GD+ +S+I PAGRKPI + +++ EV +++ L+ Sbjct: 404 PDILAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISTWKTSSQMKEVYRQMQEQLN 463 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539 +G + Y + P I E + + ++ E L F + + ++HG+M K+ +M +F Sbjct: 464 QGFQIYAVTPLITESETLDLKNAEELHEKLSHDFPNHKVVLLHGQMPGAQKDEIMTAFAA 523 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+ S C+ L P Sbjct: 524 GEIDILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGQTQSYCVFLADPK 583 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 + + R+ ++ +T DGF +AEEDLK R EG++ G QSG+P+F + + + L +A Sbjct: 584 -TDSGKARMKIIASTNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDAVNNYNTLVVA 642 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILL 685 +K+A+ ++ DPDL+ ++++ +L Sbjct: 643 QKEARALVAADPDLSDPGHKALKQVL 668 >gi|257876171|ref|ZP_05655824.1| ATP-dependent DNA helicase RecG [Enterococcus casseliflavus EC20] gi|257810337|gb|EEV39157.1| ATP-dependent DNA helicase RecG [Enterococcus casseliflavus EC20] Length = 676 Score = 363 bits (932), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 230/669 (34%), Positives = 385/669 (57%), Gaps = 33/669 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL+ +GVG+K + L+ + ET DLL Y+P + D R +++EI ++ VT Sbjct: 5 PLTVLKGVGEKRAQDLASL-----GIET-IEDLLKYYPFRYEDIQER-QLAEIQDQEKVT 57 Query: 72 ITGYISQH---SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 I G + + F +K R ++ D ++ + F+ + LK+ +I V GK Sbjct: 58 IKGIVVSPPVVNRFGYKKSRLQFRMMQDH--DVFNVSFFNQP-YLKDKVEVSEEIAVYGK 114 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VLP 186 + + + I + +F P+ ++ + ++L K+ ++ ++ +LP Sbjct: 115 WDAKRKGLTGMK---ILGSKSAEDFAPIYHVNKAVRQSVLIELIKQAFLDFGDQITEILP 171 Query: 187 -EWIEK-DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 IEK LL +KS A +H P KD + + A+ R+ ++E Q+ + ++ Sbjct: 172 LSLIEKYRLLDRKS------AMFAMHFP---KDPQESHQAKRRVIFEEFFLFQMQIQGLK 222 Query: 245 KQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 K K E G+ I+ + + ++ R +PF T +Q+ +I D+ M R+LQGDVG Sbjct: 223 KSEKAEKNGLAIDYDVQRLKEFTRKLPFELTNAQKRVTNEICHDLKSPQHMQRLLQGDVG 282 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA IA+ A + AG Q +M P ILAQQH E + + ++ ++TG+ Sbjct: 283 SGKTVVAAIALYATMTAGFQGALMVPTEILAQQHLESLNQLFDPLEVTTALLTGSTKPKE 342 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR LE++A G+ II+GTHAL Q+ + + L LVI DEQHRFGV QR L +K P V Sbjct: 343 RRVILEQLAAGEIDIIVGTHALIQEGVDFAHLGLVITDEQHRFGVNQRKVLREKGYLPDV 402 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPRTL +T+ G++D+S I E PAGR P++T + + + ++E + L++G Sbjct: 403 LFMTATPIPRTLAITAYGEMDVSVIDEMPAGRIPVETRWVRPPQFESILEWAQKELAQGH 462 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541 + Y ICP IEE + + ++ E + L +F T + ++HG+M + +K+S+M++FK Sbjct: 463 QMYVICPLIEESEMLDVKNATEIYEQLQSYFSPTYQVGMLHGKMKNQEKDSIMEAFKENQ 522 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P + Sbjct: 523 LQILVSTTVIEVGVNVPNATVMLIIDADRFGLAQLHQLRGRVGRGADASYCILIANPK-N 581 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 + R+ ++ T +GF+++E+DL+ R GE+ G +QSG+P+F A +LE+A+ Sbjct: 582 ETGVERMKIMTETTNGFVVSEKDLQLRGPGEVFGNRQSGLPEFAAADLVADAHILEVAQV 641 Query: 662 DAKHILTQD 670 +A + ++ Sbjct: 642 EAAQLWQKN 650 >gi|325963736|ref|YP_004241642.1| ATP-dependent DNA helicase RecG [Arthrobacter phenanthrenivorans Sphe3] gi|323469823|gb|ADX73508.1| ATP-dependent DNA helicase RecG [Arthrobacter phenanthrenivorans Sphe3] Length = 755 Score = 363 bits (932), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 256/761 (33%), Positives = 391/761 (51%), Gaps = 95/761 (12%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L+ R +GK+ + + K + T LL Y P +++R I+EI + VT+ Sbjct: 7 LALERRIGKRSAAVIEKHLGI-----TTVEGLLNYFPRRYMNRGELTPITEIPRDEDVTL 61 Query: 73 TGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFF----YRKTE--MLKNVFFEG---- 120 + ++ ++Q RR ++++D G+ L YR LK FF G Sbjct: 62 IARVLSSNTRRMQARRGTITDVVVSDDDGKQGLRLVGGTDYRGKAPGTLKISFFNGYKAQ 121 Query: 121 ------RKITVTGKIKKLKNRIIMVHPHYIFHN----SQD---------VNFPLIEAVYS 161 R+ +GK+ K + + +P Y + S+D + P+ A Sbjct: 122 AELLPGRRALFSGKVTSFKGTLGLTNPEYQLLDDDPFSEDGRDPEKIAAMPIPVYPATAK 181 Query: 162 LPTGLSVDLFKKIIVEALSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 LP+ +K I L+ + + LP+ + + ++ F +A+A+ +IH P A D++ Sbjct: 182 LPSWR----IQKAISTLLATMDLESLPDPVPASIALREKFMPVADAYRLIHEPESASDWQ 237 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGI---PINVEGKIAQKILRNIPFSPTKS 276 AR R Y E L Q AL R Q E PI +G +A R++PF+ T Sbjct: 238 Q---ARRRFRYQEALVLQSALARRRAQLASEEATARRPIP-DGLLA-GFDRSLPFTLTAG 292 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q + + + ++++ M R+LQG+VGSGKT+VAL AM V+AGGQA ++AP +LA Q Sbjct: 293 QAAVGETLRAELARDVPMNRLLQGEVGSGKTVVALRAMLQVVDAGGQAALLAPTEVLAAQ 352 Query: 337 HYEFIKK------------YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384 H+E I++ + V ++TG+MP A R++AL A G A I+IGTHA Sbjct: 353 HFESIRRTLGPLSGDGLLGGMDGASVQVTLLTGSMPTAARKQALLDAASGTAGIVIGTHA 412 Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDI 443 L D++ +Y L L++VDEQHRFGV+QR L KA PH+L+MTATPIPRT+ +T GD+ Sbjct: 413 LLSDNVSFYDLGLIVVDEQHRFGVEQRDALRAKARKPPHLLVMTATPIPRTVAMTVFGDL 472 Query: 444 DISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499 + S + E PAGR PI T ++ + + + R + + G + Y +CP+I + + Sbjct: 473 ETSVLDELPAGRAPIATHLVGLAENPGWVRRIWARAREEIDAGHQVYVVCPRIGTDDDGD 532 Query: 500 FR-----------------------SVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVM 534 F VVE L E S + A +HGR K VM Sbjct: 533 FSPGEAAPAAADADDDSGRELASVTGVVEHL--LEEPALSGVPLAPLHGRQEPDMKFGVM 590 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 + F KLL++TTVIEVG+DV +A++++I +A+ FG++QLHQLRGRVGRG +C+L Sbjct: 591 EDFAANRIKLLVSTTVIEVGVDVHNATLMVILDADRFGISQLHQLRGRVGRGGLPGTCLL 650 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHD 653 + S RL + T DGF ++EEDLK R+EG+ILG QSG L + + H Sbjct: 651 VTALEPGHPSRRRLEAVAATTDGFALSEEDLKLRREGDILGASQSGGRSTLKLLRVLEHG 710 Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694 ++ AR+DA+ I+ DPDL++ + I YL EAF Sbjct: 711 DVIARAREDAQQIVGGDPDLSANPELADAIENYLNPEKEAF 751 >gi|326798578|ref|YP_004316397.1| ATP-dependent DNA helicase RecG [Sphingobacterium sp. 21] gi|326549342|gb|ADZ77727.1| ATP-dependent DNA helicase RecG [Sphingobacterium sp. 21] Length = 703 Score = 363 bits (932), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 246/699 (35%), Positives = 377/699 (53%), Gaps = 44/699 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L P+ +GVG + + L K + F DL+ Y+P +IDR KI ++ + Sbjct: 8 LHTPIEYLKGVGPQKADLLKKELAI-----YTFGDLVHYYPFRYIDRTKYYKIKDLHPDM 62 Query: 69 -IVTITGYISQHSSFQLQKRRPYKIL--LNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 V I G ++ + Q+ ++R +++ D TG + L++F + L+ G + Sbjct: 63 PSVQILGRLT--AVEQIGQKRGKRLVAQFKDETGLMELVWF-QSIRWLEKSLKIGSVYII 119 Query: 126 TGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183 GK + M HP +N+ ++V P ++ VY L ++ L Sbjct: 120 FGKPTLFNGQFAMTHPEMELYNAANKNVGNPSLQPVYRSTEKLKQSFLDTKGIQRLQE-- 177 Query: 184 VLPEWIEKD--------LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235 L W K LL+++ S AEA IH P ++ + A RL ++EL Sbjct: 178 GLVAWASKKMEENLPSYLLKEQHLISKAEAITHIHFPSSVEELK---AAERRLKFEELFF 234 Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRN--------IPFSPTKSQESAIKDILQD 287 Q+ LL + + +G + K+ N +PF T +Q+ IK+I D Sbjct: 235 IQLKLLKNKLLQTHKF------KGHVFDKVGSNFNAFYQEHLPFPLTNAQKRVIKEIRHD 288 Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347 +M R+LQGDVGSGKT+VAL+ M AV+ G QA +MAP ILAQQH+ + + Sbjct: 289 THTGAQMNRLLQGDVGSGKTVVALMTMLLAVDNGCQACMMAPTEILAQQHFNGLISLIGD 348 Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407 + +++++G+ P+ R+ E + G I++GTHAL +D++Q+ L LV++DEQHRFG Sbjct: 349 LPVSIKLLSGSTPKKERKILHENLLDGSLDILVGTHALIEDTVQFKNLGLVVIDEQHRFG 408 Query: 408 VQQRLKLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466 V+QR KL +K PH+L+MTATPIPRTL +T GD+D+S I E PAGRKPIKT+ + + Sbjct: 409 VEQRAKLWRKNQIPPHMLVMTATPIPRTLAMTLYGDLDVSVIDELPAGRKPIKTLHLFES 468 Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHG 523 + ++ +++G++ Y + P I+E ++ + + +L F I+I+HG Sbjct: 469 SRLRMFGFMRDEIAKGRQVYVVYPLIKESEKLDLMHLEAGIENLAREFPLPRYKISIVHG 528 Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583 +M DK+ M F G ++++ATTVIEVG++V +A+++IIENAE FGL+QLHQLRGRV Sbjct: 529 KMPAKDKDFEMQRFVKGETQIMVATTVIEVGVNVPNATVMIIENAERFGLSQLHQLRGRV 588 Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643 GRG E S CIL+ LS RLS + T DGF IAE DLK R G+I G +QSG+ Sbjct: 589 GRGGEQSFCILMSSNKLSTEGKLRLSTMVKTNDGFEIAETDLKLRGPGDIAGTQQSGILD 648 Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682 +A LL+ AR +I QDP L + + +R Sbjct: 649 LKLADLSTDQVLLQDARNLVINIFKQDPKLEDPKNRLLR 687 >gi|117928787|ref|YP_873338.1| ATP-dependent DNA helicase RecG [Acidothermus cellulolyticus 11B] gi|117649250|gb|ABK53352.1| ATP-dependent DNA helicase RecG [Acidothermus cellulolyticus 11B] Length = 741 Score = 363 bits (932), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 229/689 (33%), Positives = 354/689 (51%), Gaps = 61/689 (8%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK-RRPYKILLNDGTGEI 101 DLL Y P + R + E+ ++ TI I +L RR Y +++ DG ++ Sbjct: 33 DLLTYFPRRYHQRGELTPLRELRDDEHATIFAEILSVRERRLSGHRRMYDVVVTDGDEKL 92 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN-SQDVNFP-LIEAV 159 L FF L+ + GR +GK+ + K +VHP F + D F I V Sbjct: 93 KLRFFNLTNWQLEKLAVGGRGF-FSGKVTRFKGERQIVHPEMEFVDPDTDPAFASAIIPV 151 Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 Y +S + + + L L + + + D+ ++ + ++ A +H P D Sbjct: 152 YPAAEHISSGMIWRAVRHVLDTLDISEDPLPADIRRRHNLVTLRRALENMHRP---ADLA 208 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQE 278 + R R + E Q+AL L R+ + E +P G + +PF+ T+ Q Sbjct: 209 DVATGRRRFTFQEAFVFQLALGLRRRMMQAEQAVPRPRRRGGLLDAFDAALPFALTEGQR 268 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 A DI D++ + M R+L G+VGSGKTLVAL AM V+AGGQA ++AP +LA QHY Sbjct: 269 RAGADIEADLAAPHPMHRLLHGEVGSGKTLVALRAMLTVVDAGGQAALLAPTEVLAMQHY 328 Query: 339 EFIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 + I + T V +ITG++ RR+ L+ IA G+ I++GTHAL Sbjct: 329 QTITRLLGSLALAGQLGGAETATRVALITGSVTGGARRELLDAIAAGEVGIVVGTHALLY 388 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQK---ATAPHVLLMTATPIPRTLVLTSLGDID 444 D++++ L LV+VDEQHRFGV+QR L K T PHVL+MTATPIPRT+ LT GD+D Sbjct: 389 DTVRFADLGLVVVDEQHRFGVEQRAALRTKGSDGTVPHVLVMTATPIPRTVALTVYGDLD 448 Query: 445 ISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497 IS + E+P+G + T ++P++ + V R++ + G++ Y ICP+I ++ Sbjct: 449 ISVLRERPSGDPKVDTFVVPLSEKPAWAERVWARVREEAAAGRQVYVICPRISTGEDDTG 508 Query: 498 -------------SNFR----------SVVERFNSLHEHFTS---------SIAIIHGRM 525 N R V R ++ E + I +HGRM Sbjct: 509 DESDDIVVPAEPADNGRLPGLSGAGRPPRVRRAAAVDEVAATLRDGPLRGLRIGTLHGRM 568 Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585 K++V+ F G +L+ATTV+EVG+DV +AS+++I +A+ FG++QLHQLRGR+GR Sbjct: 569 DAAAKDAVLADFSAGRLDVLVATTVVEVGVDVPNASMMVILDADRFGVSQLHQLRGRIGR 628 Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645 + + C+L+ P +Y RL+ + T DGF +AE DL+QR EG + + Q G F Sbjct: 629 AGQRAVCLLVTEAPADTAAYARLTGVAATCDGFRLAELDLEQRGEGTVRDVVQHGRSDFR 688 Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDLT 674 H ++E AR +A+ ++ DP+LT Sbjct: 689 FLSLLRHRDVIETARAEAEQLIAADPELT 717 >gi|70726688|ref|YP_253602.1| ATP-dependent DNA helicase RecG [Staphylococcus haemolyticus JCSC1435] gi|68447412|dbj|BAE04996.1| ATP-dependent DNA helicase [Staphylococcus haemolyticus JCSC1435] Length = 683 Score = 363 bits (932), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 222/666 (33%), Positives = 366/666 (54%), Gaps = 31/666 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL + +G+G K L ++ N N DL+ Y P+ + D ++ ++ VT Sbjct: 12 PLQSIKGLGPKRIALLQEL----NINTVE--DLVLYLPTRYEDNTV-VDLNMAEDQSTVT 64 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITL-LFFYRKTEMLKNVFFEGRKITVTGKIK 130 I G + + R K+ ++ I + F+ + + K + G +TV GK Sbjct: 65 IVGEVYSMPTVAFFGRNKSKLTVHLMVDNIAVKCIFFNQPYLKKKIELHG-TVTVKGKWN 123 Query: 131 KLKNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188 + K I + + +F N SQD + +E VY + G+ + +I + L + + EW Sbjct: 124 RAKQEI---NGNRMFFNEQSQDTSEIKLEPVYRIKEGIKQKQMRDMIYQTLDDVTI-HEW 179 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQF 247 + ++L QK S+ + + +H P+ +D AR A+ EL ++ + L R + Sbjct: 180 LTEELKQKYKLESLEDTLHALHRPKDRQDL---LRARRTYAFTELFMFELRMQWLNRLEK 236 Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 + I IN + + + + +PF T +Q+ ++ +I +D+ RM R+LQGDVGSGKT Sbjct: 237 SSDEAIEINYDIQKVKDFIETLPFELTDAQKKSVNEIFRDLKAPIRMHRLLQGDVGSGKT 296 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQH----YEFIKKYTQNTQIIVEIITGNMPQAH 363 +VA I M A AG Q+ +M P ILA+QH E +Y V ++TG++ Sbjct: 297 VVAAICMYALKTAGYQSALMVPTEILAEQHANSLTELFGEYMN-----VALLTGSVKGKK 351 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 R+ LE++ +G +IGTHAL QD + + + LVI DEQHRFGV QR L +K +V Sbjct: 352 RKVLLEQLENGTIDCLIGTHALIQDDVTFQNVGLVITDEQHRFGVNQRQLLREKGAMTNV 411 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPRTL ++ G++D+S I + P GRKPI T + ++V+ ++ L +G+ Sbjct: 412 LFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITNWAKHEQYEQVLSQMTSELKKGR 471 Query: 484 KAYWICPQIEEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGT 541 +AY ICP IE + + ++VVE + SL H+ + ++HG+M +K+ VM F Sbjct: 472 QAYVICPLIESSEHLEDVQNVVELYESLKLHYGEKKVGLLHGKMPAEEKDEVMTRFSQHE 531 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L++TTV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E S C+L+ P + Sbjct: 532 IDILVSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-T 590 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 + R++++ T DGF ++E DL+ R G+ G+KQSG+P F++A +LE+AR Sbjct: 591 ETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFMVANIVEDYRMLEVARD 650 Query: 662 DAKHIL 667 + ++ Sbjct: 651 EVAELI 656 >gi|228474943|ref|ZP_04059671.1| ATP-dependent DNA helicase RecG [Staphylococcus hominis SK119] gi|228270928|gb|EEK12316.1| ATP-dependent DNA helicase RecG [Staphylococcus hominis SK119] Length = 683 Score = 363 bits (932), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 227/688 (32%), Positives = 378/688 (54%), Gaps = 22/688 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL + +G+G K L ++ N DL+ Y P+ + D ++ ++ VT Sbjct: 12 PLQSIKGLGPKRIALLHEL------NIHTIEDLVLYLPTRYEDNTV-VDLNLAEDQSTVT 64 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G I + R K+ ++ I + + LK + +T+ GK + Sbjct: 65 VAGEIYSVPTVAFFGRNKSKLTVHLMIDNIAVKCVFFNQPYLKKKIELNQTVTIKGKWNR 124 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLI--EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 K I + + IF N + + E VY L G+ + +I ++L+ + + EWI Sbjct: 125 AKQEI---NGNRIFFNDTHTSTEEVRLEPVYRLKEGIKQKQMRDMIHQSLNDVTI-HEWI 180 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFK 248 ++L Q+ + +H P KD + AR A+ EL ++ + L R + Sbjct: 181 TEELRQRYKLELLDYTIKTLHLP---KDKQALMRARRTYAFTELFMFELRMQWLNRLEKA 237 Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 + I IN + + ++++PF T +Q+S++ +I +D+ RM R+LQGDVGSGKT+ Sbjct: 238 SDEAIEINYDINKVKSFIQSLPFELTDAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTV 297 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VA I M A AG Q+ +M P ILA+QH + + + + V ++TG++ RR L Sbjct: 298 VAAICMYALKTAGYQSALMVPTEILAEQHANSLTELFGD-HMNVALLTGSVKGKKRRVLL 356 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428 E++ +G +IGTHAL QD +++ + LVI DEQHRFGV QR L +K +VL MTA Sbjct: 357 EQLENGTIDCLIGTHALIQDDVKFKNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTA 416 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488 TPIPRTL ++ G++D+S I + P GRKPI T + D+V+ ++ L +G++AY I Sbjct: 417 TPIPRTLAISVFGEMDVSSIKQLPKGRKPIITHWAKHEQYDQVLAQMTSELKKGRQAYVI 476 Query: 489 CPQIEEKKE-SNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 CP IE + + ++VVE F SL E + + + ++HG+MS +K+ VM F N +L+ Sbjct: 477 CPLIESSEHLEDVQNVVELFESLQEFYGKTHVGLLHGKMSADEKDDVMARFSNHDIDILV 536 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 +TTV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E S C+L+ P ++ Sbjct: 537 STTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIE 595 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666 R++++ T DGF ++E DL+ R G+ G+KQSG+P F++A +LE+AR +A + Sbjct: 596 RMTIMTQTTDGFELSEYDLEMRGPGDFFGVKQSGLPDFMVANIVEDYRMLEVARDEAAEL 655 Query: 667 LTQDPDLTSVRGQSIRILLYLYQYNEAF 694 + Q + + + + +R + + N +F Sbjct: 656 I-QSGEFFTEKYERLRAFINDHLLNMSF 682 >gi|118587509|ref|ZP_01544933.1| ATP-dependent DNA helicase RecG [Oenococcus oeni ATCC BAA-1163] gi|118431960|gb|EAV38702.1| ATP-dependent DNA helicase RecG [Oenococcus oeni ATCC BAA-1163] Length = 676 Score = 363 bits (932), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 236/697 (33%), Positives = 387/697 (55%), Gaps = 38/697 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 LF ++ GVG+K + L + I+N DLL Y+P + D R S+ + Sbjct: 3 LFDSITELSGVGQKRAEILKQLGILNIE--------DLLTYYPFRYDDLESRLP-SQTDD 53 Query: 67 ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122 + VT G +S S F +K R +++L+ G I++ FF + LK G++ Sbjct: 54 GQKVTFKGMVSSQPTISRFGYKKSRIAFRLLI--GHDNISVSFFNQP--WLKEQIEIGKE 109 Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182 + + G + + I H D + A+Y + +++I A ++ Sbjct: 110 MAIFGTYDAVHEAL---KGQRIIHAENDS----LAAIYPSNQAIHQKTIQQLIENAYAKY 162 Query: 183 P-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 + + I + L+ S + + +H P A++ + AR A++E Q+ L Sbjct: 163 ADQINDIIPRRLMLAYRLLSRKKQIHDMHFPDSAENAKL---ARRSAAFEEFFIFQMRLQ 219 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 LMR K G I +I + +P+S T +Q+ I++IL D+ + M R+LQGD Sbjct: 220 LMRISAGKNRGREIEYNSEILNDFIAKLPYSLTDAQKKVIQEILLDLKRPIHMNRLLQGD 279 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT--QIIVEIITGNM 359 VGSGKT+VA IAM A AG QA IM P ILAQQH + Q+ + +E++T + Sbjct: 280 VGSGKTVVAAIAMLACYSAGLQAAIMVPTEILAQQHAINLSNLYQSAGLNLRIELLTSGL 339 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A RR+ L + G+ I++GTHAL Q + ++ L L ++DEQHRFGV+QR +L ++ Sbjct: 340 KAAARRQILADLESGEIDIVVGTHALIQADVHFHNLGLAVIDEQHRFGVKQRARLREQGQ 399 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 P +L MTATPIPRTL +T+ G++D+S I + P GR+PI T + N+ D V + +K L Sbjct: 400 NPDILAMTATPIPRTLAITAYGEMDVSTIDQLPNGRRPIITKWVKSNQFDNVFDWVKTQL 459 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538 + G + Y + P IEE + + ++ V ++ L E I ++HGR+++ +K+ V++ F Sbjct: 460 AAGAQVYVVTPLIEESETLDVQNAVLIYDRLKEELKPYRIGLLHGRLTNDEKQQVINDFS 519 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 ++L+ TTVIEVG+D+ +A+I++I +A+ FG+AQLHQLRGRVGRG++ S IL+ P Sbjct: 520 TNRVQVLVTTTVIEVGVDIKNATIMVILDADRFGIAQLHQLRGRVGRGKKQSYAILVSDP 579 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLE 657 ++ R+ + +T DGF +AE+DLK R G+++GIKQ+GMP+F + P +HD ++E Sbjct: 580 K-TQYGIDRMEAIVSTNDGFALAEKDLKLRGPGDVIGIKQAGMPEFNVGDP-IHDLKMME 637 Query: 658 IARKDAKHILTQ-DPDLTSVRGQSIRIL-LYLYQYNE 692 A++ A I +Q + D + ++ L L +Y+Y + Sbjct: 638 TAQQSAIEITSQSNWDADKENAELVKYLSLTMYRYKD 674 >gi|224535823|ref|ZP_03676362.1| hypothetical protein BACCELL_00687 [Bacteroides cellulosilyticus DSM 14838] gi|224522546|gb|EEF91651.1| hypothetical protein BACCELL_00687 [Bacteroides cellulosilyticus DSM 14838] Length = 698 Score = 363 bits (931), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 241/676 (35%), Positives = 378/676 (55%), Gaps = 31/676 (4%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + + L+K +N + + DLL+Y P ++DR I EI + + G I Sbjct: 14 GVGPQRASVLNKELNIYSLH-----DLLYYFPYKYVDRSRIYYIHEIDGTMPYIQLKGEI 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 + ++R +DGTG + L++F + + L + ++ V GK RI Sbjct: 69 LGFETIGEGRQRRLIAHFSDGTGIVDLVWF-QGIKFLVGKYKVHQEYIVFGKPSVFNGRI 127 Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLP-----TGLSVDLFKKIIVEALSRL-PVLPEWIE 190 + HP + ++ ++ Y+ + L+ +K++ + +L LPE + Sbjct: 128 NIAHPDIDNASELKLSTMGLQPYYNTTEKMKRSSLNSHAIEKMMSAVVQQLREPLPETLS 187 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 +L + + EA IH P E A+ RL ++EL Q+ +L K +++ Sbjct: 188 PAILTEHHLMPLTEALMNIHFPANP---ELLRKAQYRLKFEELFYVQLNILRYAKDRQRK 244 Query: 251 I-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 G G+I +N+PF T +Q+ +K+I +D+ +M R+LQGDVGSGKTL Sbjct: 245 YRGYVFETVGEIFNTFYAKNLPFELTGAQKRVLKEIRRDVGSGKQMNRLLQGDVGSGKTL 304 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VAL++M A++ G QA +MAP ILA QH+E I++ I VE++TG++ R L Sbjct: 305 VALMSMLIALDNGYQACMMAPTEILANQHFETIRELLYGMDIRVELLTGSVKGKKREAIL 364 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAPHVLLMT 427 + G I+IGTHA+ +D++ + L LV++DEQHRFGV QR +L T+ A PHVL+MT Sbjct: 365 TGLLTGDVRILIGTHAVIEDTVNFSSLGLVVIDEQHRFGVAQRARLWTKNAQPPHVLVMT 424 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID----EVIERLKVVLSEGK 483 ATPIPRTL +T GD+D+S I E P GRKPI T I++ D + + + ++EG+ Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPIVT----IHKYDAHRVSLYQSVHRQIAEGR 480 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTC 542 + Y + P I+E ++ + +++ E + + E F + +HG+M +K++ M F +G Sbjct: 481 QVYIVYPLIKESEKIDLKNLEEGYLHICEEFPDCKVCKVHGKMKAAEKDAQMQLFVSGEA 540 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CIL+ L + Sbjct: 541 QIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCILVTGYKLVE 600 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARK 661 + RL ++ T DGF IAE DLK R G++ G +QSG+ L IA LL+ R Sbjct: 601 ETRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLLQYVRN 660 Query: 662 DAKHILTQDPDLTSVR 677 A+ ++ DP T +R Sbjct: 661 VAEEVVDADP--TGIR 674 >gi|227878872|ref|ZP_03996777.1| ATP-dependent DNA helicase [Lactobacillus crispatus JV-V01] gi|256849792|ref|ZP_05555223.1| ATP-dependent DNA [Lactobacillus crispatus MV-1A-US] gi|262046963|ref|ZP_06019923.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus MV-3A-US] gi|227861506|gb|EEJ69120.1| ATP-dependent DNA helicase [Lactobacillus crispatus JV-V01] gi|256713281|gb|EEU28271.1| ATP-dependent DNA [Lactobacillus crispatus MV-1A-US] gi|260572945|gb|EEX29505.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus MV-3A-US] Length = 678 Score = 363 bits (931), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 223/686 (32%), Positives = 379/686 (55%), Gaps = 28/686 (4%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 N LFAP++ +GVG K + L G+ DLLFY P + + P + +I + Sbjct: 4 NALFAPVTDLKGVGTKTTAAL------GSLGIYSIYDLLFYFPFRYDELQTLP-LDQIMD 56 Query: 67 ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122 + V + G ++ S F +K R +K+ ++ ++ ++ F+ + LKN G++ Sbjct: 57 GQKVMLKGIVATEAFVSRFGYKKTRLSFKMRIDH---DVIMVNFFNQP-WLKNKIEIGQE 112 Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + + GK + + ++ D P+ + VDL I + + + Sbjct: 113 VAIYGKYNVARQSLTAFK--FVAAKENDSGMAPIYPVNRHVKQKKLVDLINVAIDDFIDQ 170 Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 + ++PE + ++ K I + +H+P+ + + E A+ + E ++ L Sbjct: 171 VQDIVPEKLRQEYRLLKDQVIIEK----MHHPKNSHEAEL---AKRSAIFREFFIFELQL 223 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L+ + K++G + ++ +++PF + Q+ + +I DM +M R+LQG Sbjct: 224 ALLTRNDGKQMGYAKKYDLTEIAQLTKSLPFELSDDQKHVVNEIFADMHSDGQMRRLLQG 283 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA+ A+ AA+ AG QA +M P ILA QH++ I + + + V ++TGN Sbjct: 284 DVGSGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTK 343 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 RR+ + G +++IGTHAL QDS+ + KL LVI+DEQHRFGV QR L K Sbjct: 344 TLERREIYRELTDGTINVVIGTHALIQDSVIFKKLGLVIIDEQHRFGVGQRQALINKGDQ 403 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 P +L MTATPIPRTL LT GD+ +S+I PAGRKPI + +++ EV +++ L+ Sbjct: 404 PDILAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISTWKTSSQMKEVYRQMQEQLN 463 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539 +G + Y + P I E + + ++ E L F + + ++HG+M K+ +M +F Sbjct: 464 QGFQIYAVTPLITESETLDLKNAEELHEKLSHDFPNHKVVLLHGQMPGAQKDEIMTAFAA 523 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+ S C+ L P Sbjct: 524 GEIDILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGQTQSYCVFLADPK 583 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 + + R+ ++ +T DGF +AEEDLK R EG++ G QSG+P+F + + L +A Sbjct: 584 -TDSGKARMKIIASTNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYDTLVVA 642 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILL 685 +K+A+ ++ DPDL+ ++++ +L Sbjct: 643 QKEARALVAADPDLSDPGHKALKQVL 668 >gi|257866567|ref|ZP_05646220.1| ATP-dependent DNA helicase RecG [Enterococcus casseliflavus EC30] gi|257872917|ref|ZP_05652570.1| ATP-dependent DNA helicase RecG [Enterococcus casseliflavus EC10] gi|257800525|gb|EEV29553.1| ATP-dependent DNA helicase RecG [Enterococcus casseliflavus EC30] gi|257807081|gb|EEV35903.1| ATP-dependent DNA helicase RecG [Enterococcus casseliflavus EC10] Length = 676 Score = 363 bits (931), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 231/672 (34%), Positives = 386/672 (57%), Gaps = 33/672 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL+ +GVG+K + L+ + ET DLL Y+P + D R +++EI ++ Sbjct: 2 LNQPLTVLKGVGEKRAQDLASL-----GIET-IEDLLKYYPFRYEDIQER-QLAEIQDQE 54 Query: 69 IVTITGYISQH---SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 VTI G + + F +K R ++ D ++ + F+ + LK+ +I V Sbjct: 55 KVTIKGIVVSPPVVNRFGYKKSRLQFRMMQDH--DVFNVSFFNQP-YLKDKVEVSEEIAV 111 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLP- 183 GK + + + I + +F P+ ++ + ++L K+ ++ ++ Sbjct: 112 YGKWDAKRKGLTGIK---ILGSKSAEDFAPIYHVNKAVRQSVLIELIKQAFLDFGDQITE 168 Query: 184 VLP-EWIEK-DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 +LP IEK LL +KS A +H P KD + + A+ R+ ++E Q+ + Sbjct: 169 ILPLSLIEKYRLLDRKS------AMFAMHFP---KDPQESHQAKRRVIFEEFFLFQMQIQ 219 Query: 242 LMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 ++K K E G+ I+ + + ++ R +PF T +Q+ +I D+ M R+LQG Sbjct: 220 GLKKSEKAEKNGLAIDYDVQRLKEFTRKLPFELTNAQKRVTNEICHDLKSPQHMQRLLQG 279 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA IA+ A + AG Q +M P ILAQQH E + + ++ ++TG+ Sbjct: 280 DVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQHLESLNQLFDPLEVTTALLTGSTK 339 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 RR LE++A G+ II+GTHAL Q+ + + L LVI DEQHRFGV QR L +K Sbjct: 340 PKERRVILEQLAAGEIDIIVGTHALIQEGVDFAHLGLVITDEQHRFGVNQRKVLREKGYL 399 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 P VL MTATPIPRTL +T+ G++D+S I E PAGR P++T + + + ++E + L+ Sbjct: 400 PDVLFMTATPIPRTLAITAYGEMDVSVIDEMPAGRIPVETRWVRPPQFESILEWAQKELA 459 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFK 538 +G + Y ICP IEE + + ++ E + L +F T + ++HG+M + +K+S+M++FK Sbjct: 460 QGHQMYVICPLIEESEMLDVKNATEIYEQLQSYFSPTYQVGMLHGKMKNQEKDSIMEAFK 519 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P Sbjct: 520 ENQLQILVSTTVIEVGVNVPNATVMLIIDADRFGLAQLHQLRGRVGRGADPSYCILIANP 579 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 ++ R+ ++ T +GF+++E+DL+ R GE+ G +QSG+P+F A +LE+ Sbjct: 580 K-NETGVERMKIMTETTNGFVVSEKDLQLRGPGEVFGNRQSGLPEFAAADLVADAHILEV 638 Query: 659 ARKDAKHILTQD 670 A+ +A + ++ Sbjct: 639 AQVEAAQLWQKN 650 >gi|218128542|ref|ZP_03457346.1| hypothetical protein BACEGG_00112 [Bacteroides eggerthii DSM 20697] gi|217989266|gb|EEC55580.1| hypothetical protein BACEGG_00112 [Bacteroides eggerthii DSM 20697] Length = 698 Score = 363 bits (931), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 236/673 (35%), Positives = 371/673 (55%), Gaps = 33/673 (4%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + + L+K + + F DLL+Y P ++DR I EI + + G I Sbjct: 14 GVGPQRASVLNKELGIFS-----FHDLLYYFPYKYVDRSRIYYIQEIDGTMPYIQLKGEI 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 + ++R +DGTG + L++F + + L + ++ V GK RI Sbjct: 69 LGFETAGEGRQRRLIAHFSDGTGVVDLIWF-QGIKYLIGKYKVHQEYIVFGKPSVFNGRI 127 Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190 + HP + ++ ++ Y+ + +E + + V LPE + Sbjct: 128 NIAHPDIDPASELKLSAMGLQPYYNTTEKMKRSSLNSHAIEKMMKNIVRQLDEPLPETLS 187 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 LL + + EA IH P + A RL ++EL Q+ +L K +++ Sbjct: 188 PALLAEHHLMPLTEALMNIHFPVSP---DVLRKAEYRLKFEELFYVQLNILRYAKDRQRK 244 Query: 251 IGIPINVEGKIAQKI--------LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 G + +K+ RN+PF T +Q+ +K+I +D+ +M R+LQGDV Sbjct: 245 ------YRGYVFEKVGDTFNGFYSRNLPFELTNAQKRVLKEIRRDLGSGRQMNRLLQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVAL++M A++ G QA +MAP ILA QHY+ I++ + VE++TG++ Sbjct: 299 GSGKTLVALMSMLMALDNGYQACMMAPTEILANQHYDTIRELLYGMDVRVELLTGSIKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-AP 421 R L + G I+IGTHA+ +D++ + L LV++DEQHRFGV QR +L K+T P Sbjct: 359 RREAILSGLLTGDVQILIGTHAVIEDTVNFASLGLVVIDEQHRFGVAQRARLWAKSTQPP 418 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 H+L+MTATPIPRTL +T GD+D+S I E P GRKPI T+ + + ++ + E Sbjct: 419 HILVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATIHQFDSHRVSLYRSVRKQIEE 478 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNG 540 G++ Y + P I+E ++ + +++ E F + E F + +HG+M +K++ M F +G Sbjct: 479 GRQVYIVYPLIKESEKIDLKNLEEGFLHICEEFPDCKVCKVHGKMKPAEKDAQMQLFVSG 538 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CIL+ L Sbjct: 539 EAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCILVTGYKL 598 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIA 659 ++++ RL ++ T DGF IAE DLK R G++ G +QSG+ L IA LL+ Sbjct: 599 AEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLLQYV 658 Query: 660 RKDAKHILTQDPD 672 R A+ I+ +DP+ Sbjct: 659 RGVAEAIVDKDPN 671 >gi|282879459|ref|ZP_06288196.1| ATP-dependent DNA helicase RecG [Prevotella buccalis ATCC 35310] gi|281298431|gb|EFA90863.1| ATP-dependent DNA helicase RecG [Prevotella buccalis ATCC 35310] Length = 700 Score = 363 bits (931), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 240/674 (35%), Positives = 373/674 (55%), Gaps = 35/674 (5%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE-RIVTITGYI 76 GVG K L K AN + DLL Y+P ++DR +I ++ + V + G I Sbjct: 14 GVGPKRKAILEK-----EANIATWGDLLEYYPYKYVDRSRIYRIIDLQGDLPFVQLKGKI 68 Query: 77 SQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 F + R+ + +DGTG L++F + KN + + V G+ R Sbjct: 69 LSFEEFTMSPRKKRVVAHFSDGTGIADLVWFQGTQYVYKN-YKVNEEYIVFGRPTIYGGR 127 Query: 136 IIMVHPHYIFHNSQDVNF------PLIEAVYSLP-TGL---SVDLFKKIIVEALSRLPV- 184 HP + D+ P A + +GL +++ K +V+ L + Sbjct: 128 YQFAHPD--IDKAADIQLSEMGMQPYYMATERMKKSGLQSHAIEKLTKTLVDKLGENDLS 185 Query: 185 --LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 LP +I L S AEA IH P+ D + A+ RL ++EL Q+ +L Sbjct: 186 ETLPPFITGPL----HLISRAEAMAKIHYPKSLDDVQ---RAQLRLKFEELFYVQLNILR 238 Query: 243 MRKQFKKEI-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 K++ G N G +N +PF T +Q+ + +I +DM+ +M R++QG Sbjct: 239 YANDRKRKYQGYVFNHVGPQFHHFYKNNLPFELTNAQKRVMHEIRKDMTTGRQMNRLVQG 298 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKTLVAL++M A++ G QA +MAP ILA+QH+ IKK+ + VE++TG + Sbjct: 299 DVGSGKTLVALMSMLIAIDNGYQACMMAPTEILAEQHFATIKKFLGGMDVRVELLTGMVK 358 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT- 419 R + + G+ HI++GTHA+ +D++++ L + +VDEQHRFGV QR KL K+ Sbjct: 359 GKKRNEVFHGLLTGEVHILVGTHAVIEDNVRFSHLGMAVVDEQHRFGVAQRAKLWGKSER 418 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 PH+L+MTATPIPRTL +T GD+D+S I E P GRKPI+T+ N++ + + ++ + Sbjct: 419 PPHILVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTIHQYDNQMTSLYQGIRKQI 478 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538 +G++ Y + P I E ++ + +++ F SL F ++ +HG+M +K++ M F Sbjct: 479 QQGRQVYIVFPLITESEKIDLKNLEAGFESLCTIFPDFKLSKVHGKMKPKEKDAEMQKFS 538 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G ++L+ATTVIEVG+DV +AS+++I +A FGL+QLHQLRGRVGRG E S CIL+ Sbjct: 539 RGETQILVATTVIEVGVDVPNASVMVILDAHRFGLSQLHQLRGRVGRGAEQSYCILVTSH 598 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLE 657 LSK + R+ ++ T DGF IAE DLK R G++ G +QSG+ L IA +++ Sbjct: 599 KLSKETRRRIDIMCETCDGFQIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQIIQ 658 Query: 658 IARKDAKHILTQDP 671 +AR +A+ I+ DP Sbjct: 659 LARDEAQKIIEADP 672 >gi|257453021|ref|ZP_05618320.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 3_1_5R] gi|317059561|ref|ZP_07924046.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 3_1_5R] gi|313685237|gb|EFS22072.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 3_1_5R] Length = 679 Score = 363 bits (931), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 224/604 (37%), Positives = 353/604 (58%), Gaps = 12/604 (1%) Query: 43 DLLFYHPSSFIDRHYRPKISEIS-EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101 DLL+Y P ++ +R KI+E+ EE V + +S+ R+ K DG+G + Sbjct: 30 DLLYYFPRAYDNRSNIKKIAELRMEEYAVIHAKLLHVYSAPTKLGRKMTKATATDGSGFL 89 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161 +++F L+ + G +K+ M +P + Q + ++ +YS Sbjct: 90 EIVWF--GMPYLQKSLKLQEEYIFVGTVKRAMGAFQMTNPEFKLSKGQKMRGEIL-PIYS 146 Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221 LS + +K + E L +L E I K++ QK + +A + IH P K E Sbjct: 147 SHKNLSQNRLRKYLKEILFENSLLSENIPKEICQKYNILGRNQALSEIHFPSSEKILE-- 204 Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK--IAQKILRNIPFSPTKSQES 279 A+ R A +ELL ++ +L R ++EGK + ++ L ++PF TK+Q+ Sbjct: 205 -EAKRRFAIEELLIIEMGILKNRFLTDALTQAFYHLEGKKTLVKQYLSSLPFQLTKAQKK 263 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 I +I +D+ Q + R++QGDVGSGKT+VA++ + +E G Q +MAP ILA QHY Sbjct: 264 VITEIYKDLEQGRIVNRLVQGDVGSGKTMVAMVLLLYMIENGYQGALMAPTEILAIQHYL 323 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 I Q + VE++TG++ RRK L+ + G ++IGTHAL ++ +++++L ++ Sbjct: 324 GIYSKMQELGLRVELLTGSIRGKKRRKLLDDLKEGNIDLLIGTHALLEEEVRFHQLGFIV 383 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 +DEQHRFGV QR KL +K ++L+MTATPIPR+L L+ GD+D+S + E P GR PIK Sbjct: 384 IDEQHRFGVLQRKKLREKGILTNLLVMTATPIPRSLALSIYGDLDVSILDELPPGRSPIK 443 Query: 460 TVIIPINR-IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517 T I ++++ ++ LS+GK+AY++ P IEE ++ S++E + E + Sbjct: 444 TKWISTKEDMEKMYAFIRKQLSQGKQAYFVAPLIEESEKLLLSSILEVEEEVKEKLPNYK 503 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 IA++HGRM +I+K+ +M FK +L++TTVIEVGIDV +A I+ I NAE FGL+ LH Sbjct: 504 IALLHGRMKNIEKDEIMQRFKQREIDILVSTTVIEVGIDVPNAVIMTILNAERFGLSALH 563 Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637 QLRGRVGRG++ S C L+ ++ S RL +++ T+DGF+IAEEDLK R GEI G++ Sbjct: 564 QLRGRVGRGKDASFCFLISKTQ-NETSKQRLEIMEATQDGFIIAEEDLKLRNAGEIFGLR 622 Query: 638 QSGM 641 QSG+ Sbjct: 623 QSGL 626 >gi|323705491|ref|ZP_08117066.1| ATP-dependent DNA helicase RecG [Thermoanaerobacterium xylanolyticum LX-11] gi|323535393|gb|EGB25169.1| ATP-dependent DNA helicase RecG [Thermoanaerobacterium xylanolyticum LX-11] Length = 682 Score = 363 bits (931), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 230/669 (34%), Positives = 365/669 (54%), Gaps = 17/669 (2%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L P+ +GVG K +L L +I ET D L Y+P + DR I + Sbjct: 3 LSKPIQYVKGVGPKRALLLKRI-----GIET-VKDALEYYPREYEDREKIIPIDMLKIGE 56 Query: 69 IVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 T YI+ + ++++ KI + DG+G + L+++ +KN F G + + G Sbjct: 57 KQTFKAYIAGKAREYRIKGLIITKIPVKDGSGALELVWY--NQPYVKNNFKLGEEYIING 114 Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVLP 186 +I ++ + +P + ++N I +Y L GLS + + II L + + Sbjct: 115 RISYKYGQVYVENPTMDKSDVLNLNAGRIVPIYKLTDGLSQKILRNIIYSLLKEYINEIE 174 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E ++D L + + I +A IH P E A+ RL + E Q+ L L++ + Sbjct: 175 EIFDEDFLTEYNLLGIRKAIKNIHFPESP---EMLERAKYRLIFQEFFILQLGLNLIKNR 231 Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 + + I + + L N+ F+ TK+Q+ A+ +IL DM M R+LQGDVGSGK Sbjct: 232 YDIDKS-GIKFKHVDLSEFLNNLKFTFTKAQDKALNEILNDMYSGKVMNRLLQGDVGSGK 290 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366 T++A AM AV+ G QA I+ P ILA+QHY +K+ + E++TG++ + Sbjct: 291 TIIAAAAMYVAVKNGYQASILTPTEILAKQHYLSLKELYDKLGVKTELLTGSISNKRKNL 350 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426 +E++ +G+ +++GTH+L +D++Q+ L L I DEQHRFGV+QR K +VL+M Sbjct: 351 IIEKVKNGEIDVLVGTHSLIEDNVQFKNLGLAITDEQHRFGVRQRAMFKNKGNQTNVLVM 410 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486 TATPIPRTL L GD+DIS I E P GRK ++T I + + + + +G +AY Sbjct: 411 TATPIPRTLALMLYGDLDISIIDELPPGRKKVETYAISGALRERAYKFVVNEIKKGHQAY 470 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKL 544 +CP IE+ + +S + +++ + ++HG M+ DK+ VM F +G + Sbjct: 471 IVCPLIEDSQTIYAKSAEVVYEEIYKGVFKDFRVGLVHGGMNSNDKDKVMSEFVDGEIDI 530 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 L++TTVIEVG++V +A++I+IENAE FGLAQLHQLRGRVGR S CIL+ + S Sbjct: 531 LVSTTVIEVGVNVPNATVIVIENAERFGLAQLHQLRGRVGRSSHQSYCILIAY-SYSDVV 589 Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 RL V+ T DGF IAE+DL+ R GE G+KQ G+P+ +A +L++A+K + Sbjct: 590 KKRLKVMTETNDGFKIAEKDLEIRGPGEFFGVKQHGLPELKLANLFDDIEILKLAQKAVE 649 Query: 665 HILTQDPDL 673 ++ D + Sbjct: 650 RFISYDGNF 658 >gi|282858677|ref|ZP_06267833.1| ATP-dependent DNA helicase RecG [Prevotella bivia JCVIHMP010] gi|282588530|gb|EFB93679.1| ATP-dependent DNA helicase RecG [Prevotella bivia JCVIHMP010] Length = 699 Score = 363 bits (931), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 246/671 (36%), Positives = 377/671 (56%), Gaps = 30/671 (4%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + LSK + + DLL Y+P +IDR ISE+S++ V I G I Sbjct: 14 GVGPRRKDILSKELGINT-----YRDLLEYYPYKYIDRTKVYLISELSQDMPFVQIKGKI 68 Query: 77 SQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 + + +R+ I +DG G L++F + KN + G++ V GK R Sbjct: 69 LSFEEYDMGRRKKRIIAHFSDGHGVCDLVWFNGTQYVYKN-YQVGKEYVVFGKPGFYNGR 127 Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLP-----TGLSVDLFKKIIVEALSRLPV-----L 185 HP + +N ++ Y LS +K+ +S+L L Sbjct: 128 FQFTHPDIDDASQLQLNDMGMQPFYVTTEKMKNASLSSRAMEKLTKVLISKLTTPLEETL 187 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMR 244 P +I L S EAF IH P+ +D T AR RL ++EL Q+ +L Sbjct: 188 PPFITTHL----HLISRDEAFRKIHYPKSVED---TQRARMRLKFEELFYVQLNILRYAS 240 Query: 245 KQFKKEIGIPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 +K G G+ N+PF+ T +Q+ +K+I DM +M R+LQGDVG Sbjct: 241 DHHRKYRGYAFKRIGEQFNWFYHHNLPFALTNAQKRVMKEIRADMGSGRQMNRLLQGDVG 300 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKTLVAL++M V+ G QA ++AP ILA+QH + I+++ + VE++TG + Sbjct: 301 SGKTLVALMSMLIGVDNGFQACLVAPTEILAEQHLQTIREFLHGMNLRVELLTGIVKGKK 360 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAPH 422 R+ LE + G HI++GTHA+ ++++ + KL + ++DEQHRFGV QR +L T+ PH Sbjct: 361 RKAILEGLVDGTIHILVGTHAILEETVAFQKLGVAVIDEQHRFGVAQRARLWTKSEQPPH 420 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 VL+MTATPIPRTL +T GD+D+S I E P GRKPI T+ ++ + + ++ + G Sbjct: 421 VLVMTATPIPRTLAMTIYGDLDVSIIDELPPGRKPIATIHKYDDQTTSLYQGIRQQILRG 480 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541 ++ Y + P I+E ++S+ +++ E + +L E F ++ IHG+M D +KE M F G Sbjct: 481 RQVYIVFPLIKESEKSDLKNLEEGYITLKEAFPEFHLSKIHGKMKDKEKEEEMQKFVLGQ 540 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+ + L+ Sbjct: 541 TQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGAQQSYCILVTNHKLT 600 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIAR 660 K + R+ V+ T DGF IAE DLK R G++ G +QSG+ L IA L+++AR Sbjct: 601 KETKKRIDVICGTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLVQMAR 660 Query: 661 KDAKHILTQDP 671 +A++I+ DP Sbjct: 661 DEARNIIETDP 671 >gi|256379970|ref|YP_003103630.1| ATP-dependent DNA helicase RecG [Actinosynnema mirum DSM 43827] gi|255924273|gb|ACU39784.1| ATP-dependent DNA helicase RecG [Actinosynnema mirum DSM 43827] Length = 733 Score = 363 bits (931), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 231/687 (33%), Positives = 369/687 (53%), Gaps = 53/687 (7%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKI--LLND 96 T DLL ++P + +R +IS + VT+ + ++ RR + ++ D Sbjct: 27 TTVGDLLRHYPRRYDERGKLTEISGLELGEHVTVQARVKSARLKNMRARRGEMLDAVITD 86 Query: 97 GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY----IFHNSQDVN 152 GT E+ L+FF R + ++ K GK+ ++ + HP Y + D Sbjct: 87 GTSELHLVFFGRGSRKVERELLPNTKAMFAGKVGIFNGKLQLAHPDYEIVDGLTGADDGG 146 Query: 153 FPLIEA--------VYSLPTGLSVDLFKKIIVEALSRLPVLPE-WIEKDLLQKKSFPSIA 203 + + VY G+ K + + L+ + E + ++L + + ++ Sbjct: 147 GAVTASKFADAFIPVYPAAQGIQSWNVAKCVEQVLAVWDGVEEDPLPEELRESEGLITLE 206 Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR-KQFKKEIGIPINVEGKIA 262 +A IH P + + A++RL +DE LA Q+AL R + V G++A Sbjct: 207 KALRDIHRP---DGWPAVTVAQQRLKWDEALAVQLALAQRRHSATARPASACPRVAGRVA 263 Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 +PF T Q++ I +D+S M R+LQG+VGSGKT+VAL AM V++G Sbjct: 264 DAFDARLPFELTAGQQAVGDRIAEDLSATQPMNRLLQGEVGSGKTMVALRAMLQVVDSGR 323 Query: 323 QAVIMAPIGILAQQHY----EFIKKYTQNTQII-------VEIITGNMPQAHRRKALERI 371 Q+ ++AP +LA QH E + Q ++ V ++TG+MP A R+KAL I Sbjct: 324 QSAMLAPTEVLAAQHARSLRELLGDLGQAGELGGAEHATRVTLLTGSMPAAQRKKALLEI 383 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTAT 429 G+A I++GTHAL QD + + L LV+VDEQHRFGV+QR L+ + + PHVL+MTAT Sbjct: 384 MTGEAGIVVGTHALIQDKVAFADLGLVVVDEQHRFGVEQRAALSARPGSAVPHVLVMTAT 443 Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKA 485 PIPRT+ +T GD+++S + E P GR PIKT ++P +D +R+ + +G + Sbjct: 444 PIPRTVAMTVYGDLEVSALRELPGGRSPIKTSVVPTAEKPQWLDRAWQRIHEEVGKGHQV 503 Query: 486 YWICPQI-----------EEKKESNFR---SVVERFNSLHEHFTSS--IAIIHGRMSDID 529 Y +CP+I +EK + + R +VV+ N L I I+HGR++ D Sbjct: 504 YVVCPRIGDGEDEDGKPPKEKGDPDKRPPLAVVDVANRLAAGPLKGLRIDILHGRLAPDD 563 Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589 K++VM +F ++L+ATTV+EVG++V +A++++I +A+ FG++QLHQLRGRVGRG Sbjct: 564 KDAVMRAFAANEVQVLVATTVVEVGVNVPNATVMVIMDADRFGVSQLHQLRGRVGRGSAP 623 Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649 C+L+ P + + RL +++T DGF +A+ DL+ R+EG+ILG QSG L Sbjct: 624 GLCLLVSEMPGASATMQRLRAVESTLDGFELAQLDLELRREGDILGAAQSGTRSGLKMLS 683 Query: 650 ELHD-SLLEIARKDAKHILTQDPDLTS 675 L D +E AR A+ I+ +DPDL + Sbjct: 684 LLRDEDTIEAARVVAQEIVERDPDLGA 710 >gi|226226849|ref|YP_002760955.1| ATP-dependent DNA helicase RecG [Gemmatimonas aurantiaca T-27] gi|226090040|dbj|BAH38485.1| ATP-dependent DNA helicase RecG [Gemmatimonas aurantiaca T-27] Length = 706 Score = 362 bits (930), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 239/698 (34%), Positives = 378/698 (54%), Gaps = 26/698 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ +GVG +L L+++ T DLL + P + D I++ + V+ Sbjct: 26 PVTYLKGVGPARALMLARL------GITVAGDLLRHVPHRYEDASTITPINDAAIGADVS 79 Query: 72 ITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 + G + +K R ++ ++ D +G I + + L +G + TG ++ Sbjct: 80 VLGQVIAKGVLPTRKGLRVFQAVIQDSSGLIEI--AWPGQPFLDRTINKGDWLLCTGPVR 137 Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEW 188 R + + + + + + A+Y GLSV + + ++ + L + LP++ E Sbjct: 138 FFHGRRLQPREYVNLGPDEEGTGGGRVLAIYPSTEGLSVRMLRSLVQQHLDALLPLVQEP 197 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK--Q 246 + D+LQ+ P++ EA ++H P + E R RLA++ELL Q+ L R+ Q Sbjct: 198 LPADVLQEADVPALPEALRMVHRPASVAEAER---GRARLAFEELLCVQV---LHRRAHQ 251 Query: 247 FKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 ++ G + + ++ +P++ T +Q A+++I DM RM R+LQGDVG+ Sbjct: 252 VARQARPGRALRSRRTLTTQLREQLPYALTAAQVRAVREIATDMGSPWRMHRLLQGDVGA 311 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKT+VAL A A+E G Q +MAP +LA+QH + I ++TG + A R Sbjct: 312 GKTVVALFAALIAMENGAQVALMAPTELLAEQHARGMTALLAPLGIAPVLLTGRLSAADR 371 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424 R AL RIA +++GTHAL Q + + L L I+DEQHRFGV+QR L K TA VL Sbjct: 372 RAALARIADPAPALVVGTHALLQSDVAFANLGLSIIDEQHRFGVEQRAVLGDKGTATDVL 431 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 LMTATPIPR+L LT GD+D+S + E+P GR+PI TV+ + D+V L G + Sbjct: 432 LMTATPIPRSLALTLHGDLDVSVLDERPPGRQPITTVVRRESARDKVFAFAASELDAGHQ 491 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542 Y + P IE ++ + ++ F++L + +A++HGR+ +++++M F++G Sbjct: 492 LYVVYPLIETSEKIDLKNATTMFDTLVAGPLAGRQVALLHGRIPGEERDAIMRRFRDGEI 551 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 L++TTVIEVGIDV +AS++IIE+ E FGL+QLHQLRGRVGRG+ S CILL + Sbjct: 552 DALVSTTVIEVGIDVPNASVMIIEHPERFGLSQLHQLRGRVGRGQARSYCILLGD--VGG 609 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662 + RL + TEDGF IA DL+ R G++ G +Q G P F +A ++L + AR+ Sbjct: 610 EAAERLELFAGTEDGFEIARADLRLRGMGDLFGARQHGDPAFRVADLLRDEALHDTAREV 669 Query: 663 AKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 A +L QDP+L +R LL + Y A R G Sbjct: 670 ADRLLAQDPELAQPAHAGLRHLLTV-GYARALDLFRVG 706 >gi|225016666|ref|ZP_03705858.1| hypothetical protein CLOSTMETH_00575 [Clostridium methylpentosum DSM 5476] gi|224950630|gb|EEG31839.1| hypothetical protein CLOSTMETH_00575 [Clostridium methylpentosum DSM 5476] Length = 694 Score = 362 bits (930), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 225/606 (37%), Positives = 341/606 (56%), Gaps = 30/606 (4%) Query: 90 YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT----VTGKIKKLKNRIIM--VHPHY 143 +K+ DG G + + F + ++G K+ + GK+ +M ++ Sbjct: 99 FKVYATDGAGNLAITIFNNRYA------YDGLKLEEEYLLYGKVG---GNFVMREMNSPL 149 Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP-EWIEKDLLQKKSFPSI 202 I D+ ++ VY L GL+ + EALS + E + K++L++ S Sbjct: 150 ILEAGGDLT---MQPVYPLTEGLTSKMVITNQKEALSMVTGGAYEPLPKEILEQYQLCSF 206 Query: 203 AEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA 262 A IH P AR+RL ++ELL Q+ L L+++ K + + Sbjct: 207 NFALQNIHFPVDPFSLGL---ARKRLVFEELLTWQLGLALVKQ--KNSTSTDVTLSDTSI 261 Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 + L+ +PF+ T +Q+ I + L D S M R++QGDVGSGKT+VA A + G Sbjct: 262 EPFLQALPFTLTSAQQRVIGECLADASSTVPMNRLVQGDVGSGKTMVAAALCYAMAKNGY 321 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q+ +MAP ILA QH++ + + + ++TG++ + + E+I + +++GT Sbjct: 322 QSAMMAPTEILASQHFKTLSQLLSPLGLRTCLLTGSLTKKQKELLKEQIRAKEVDVVVGT 381 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 HAL QDS ++ L LVI DEQHRFGV QR KL K PHVL+M+ATPIPRTL L GD Sbjct: 382 HALVQDSTEFASLGLVITDEQHRFGVNQRQKLVDKGEHPHVLVMSATPIPRTLALILYGD 441 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNF 500 +DIS I E P GR+ I T IP ++ + +K L EG++AY +CP IE E++ +N Sbjct: 442 LDISIIDELPKGRQKIDTFFIPPSKRERAFGFIKQHLDEGRQAYIVCPMIENGEQEVANV 501 Query: 501 RSVVERF-NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 +R + +T + ++HG+M +KE VM +F+ G +LL+ATTV+EVG+DV + Sbjct: 502 TGYAQRLREGVFAGYT--LGVLHGKMKAEEKEQVMRAFQTGETQLLVATTVVEVGVDVPN 559 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619 A I++IENAE FGL+QLHQLRGRVGRGE SSCIL+ +N +RL + +T DGF Sbjct: 560 AVIMMIENAEMFGLSQLHQLRGRVGRGEHKSSCILVSGLKTEEN-LSRLGTMCSTSDGFA 618 Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679 IAE+DLKQR G+ G +Q G+P F IA S+L+ ++ A+ I++QDP L + + Sbjct: 619 IAEQDLKQRGPGDFFGKRQHGLPAFKIADMVEDLSVLKETQRLAREIVSQDPGLAELGHK 678 Query: 680 SIRILL 685 +R L+ Sbjct: 679 GLRGLV 684 >gi|257420441|ref|ZP_05597431.1| ATP-dependent DNA helicase recG [Enterococcus faecalis X98] gi|257162265|gb|EEU92225.1| ATP-dependent DNA helicase recG [Enterococcus faecalis X98] gi|315154698|gb|EFT98714.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0043] Length = 678 Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 218/628 (34%), Positives = 358/628 (57%), Gaps = 20/628 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98 +LL Y+P + D + +SEI ++ VT+ G + S + +K R ++++ Sbjct: 31 ELLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 I + FF + LK+ +I V GK + + + +++D P+ Sbjct: 90 --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 + V L + E S ++ E + DLL+K EA +H P ++ Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LVEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE- 200 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277 + A+ R+ ++E Q+ + ++KQ K E G+ I + + + +PF T +Q Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDVDRLKTFTQGLPFELTGAQ 258 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + +I +D+ M R+LQGDVGSGKT+VA IA+ A + AG Q +M P ILAQQH Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 E +++ ++ ++TG+ RR LE +A+G+ I++GTHAL Q + +++L L Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI DEQHRFGV QR L +K P VL MTATPIPRTL +T+ G++D+S I E PAGR P Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516 I+T I ++D V+E ++ L+ G +AY ICP IEE + + ++ E F + ++ Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + ++HG+M + +K+ +M FK+ +LL++TTVIEVG++V +A++++I +A+ FGLAQ Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG S CIL+ +P ++ R+ ++ T +GF+++E DL+ R GE+ G Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663 +QSG+P+F + ++LE+AR++A Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645 >gi|298373533|ref|ZP_06983522.1| ATP-dependent DNA helicase RecG [Bacteroidetes oral taxon 274 str. F0058] gi|298274585|gb|EFI16137.1| ATP-dependent DNA helicase RecG [Bacteroidetes oral taxon 274 str. F0058] Length = 697 Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 246/657 (37%), Positives = 366/657 (55%), Gaps = 39/657 (5%) Query: 43 DLLFYHPSSFID--RHYRPKISEISEERI-VTITGYISQHSSFQLQKRRPYKILLNDGTG 99 DLL + P +ID R YR I+E+S+ V + G I+ + R DG+ Sbjct: 32 DLLLHFPYKYIDVRRFYR--IAELSDNMPHVQLHGRITDFEMKGQGRSRRLVGYFTDGSE 89 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH---YIFHNSQ-DVNFPL 155 + L++F + + + + G++ V GK K+ M HP Y N + D+ F Sbjct: 90 SMELVWFAGEKYVTQK-YSVGQEYVVFGKPKRWGKVFTMPHPEIEPYEGENRRADIGF-- 146 Query: 156 IEAVYSLPTG-----LSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNII 209 +Y+ L + II L+ + V +PE + L+++ S EA + Sbjct: 147 -RTMYNTTDTMKKHYLHSSALRDIIANLLNNVEVDVPETLPPYLIERYRLISRREAIYNM 205 Query: 210 HNPRKAKDFEWTSPARERLAYDELLAGQIALLL--MRKQFKKE------IGIPINVEGKI 261 H PR + A RL ++EL Q+++L + +Q K E +GI N K Sbjct: 206 HIPRNQVLLD---AATRRLKFEELFYIQMSILRQSVARQEKSEGFVMDRVGIHFNDFYK- 261 Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321 N+PF+ T++Q+ IK+I D+ +M R+LQGDVGSGKT+VAL++ A++ G Sbjct: 262 -----NNLPFTLTEAQKRVIKEIHADLKSGRQMNRLLQGDVGSGKTIVALLSSLIAIDNG 316 Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 QA IMAP ILA QHY I + T+ I V ++ G+ + R + + G+ IIIG Sbjct: 317 FQACIMAPTEILATQHYTGIARLTEGLGINVRLLIGSTKKKDRDQIHRMLESGELDIIIG 376 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSL 440 THAL +D +++ L VI+DEQHRFGV QR KL K PH+L+MTATPIPRTL +T Sbjct: 377 THALIEDKVKFRNLGFVIIDEQHRFGVAQRAKLWAKNIQPPHILVMTATPIPRTLAMTVY 436 Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500 G++DIS I E P GRKPIKT N+ ++ L+ L + Y + P I+E ++ + Sbjct: 437 GNLDISVIDELPPGRKPIKTYHYYDNKRQDLYRFLRHRLDNKAQVYIVYPLIQESEKLDL 496 Query: 501 RSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 +++ + +N++ E F I +HG+M+ +K+ M FK+G +L++TTVIEVG+DV + Sbjct: 497 KNLEDGYNAMCEVFPDIKIDFLHGKMTPAEKDERMARFKSGQTGILMSTTVIEVGVDVPN 556 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619 AS+++IE+AE FGL+QLHQLRGRVGRG E S CIL+ +S NS RL ++ T +GF Sbjct: 557 ASVMVIESAERFGLSQLHQLRGRVGRGAEQSYCILMSSFKISDNSLRRLQIMTETNNGFE 616 Query: 620 IAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 IAE DL R GE+ G QSG+P + +A +L+ AR AK IL +DP L + Sbjct: 617 IAEADLTLRGPGELEGTAQSGLPFELHVANLARDGIVLQAARDTAKQILDRDPRLEA 673 >gi|167765297|ref|ZP_02437410.1| hypothetical protein BACSTE_03685 [Bacteroides stercoris ATCC 43183] gi|167696925|gb|EDS13504.1| hypothetical protein BACSTE_03685 [Bacteroides stercoris ATCC 43183] Length = 698 Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 235/667 (35%), Positives = 370/667 (55%), Gaps = 21/667 (3%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + + L+K + + F DLL+Y P ++DR +I EI + + G I Sbjct: 14 GVGPQRASVLNKELGIFS-----FHDLLYYFPYKYVDRSRIYRIREIDGAMPYIQLKGEI 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 + ++R +DGTG + L++F + + L + ++ V GK RI Sbjct: 69 LGFETAGEGRQRRLIAHFSDGTGIVDLIWF-QGIKYLIGKYKVHQEYIVFGKPTVFNGRI 127 Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190 + HP + ++ ++ Y+ + +E + + V LPE + Sbjct: 128 NIAHPDIDPASELKLSAMGLQPYYNTTEKMKRSSLNSHAIEKMMKSLVGQLNEPLPETLS 187 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFKK 249 LL + + +A IH P + A RL ++EL Q+ +L K + +K Sbjct: 188 PALLAEHHLMPLTDALMNIHFPSGP---DVLRKAEYRLKFEELFYVQLNILRYAKDRQRK 244 Query: 250 EIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 G G I RN+PF T +Q+ +K+I +D+ +M R+LQGDVGSGKTL Sbjct: 245 YWGYVFEKVGDIFNGFYSRNLPFELTNAQKRVLKEIRRDLGAGRQMNRLLQGDVGSGKTL 304 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VAL++M A++ G QA +MAP ILA QHYE I++ + VE++TG++ R L Sbjct: 305 VALMSMLIALDNGYQACMMAPTEILANQHYETIRELLYGMDVRVELLTGSIKGKRRETIL 364 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAPHVLLMT 427 + G I+IGTHA+ +D++ + L LV++DEQHRFGV QR +L T+ PH+L+MT Sbjct: 365 SGLLTGDVQILIGTHAVIEDTVNFASLGLVVIDEQHRFGVAQRARLWTKSVQPPHILVMT 424 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T GD+D+S I E P GRKPI T+ + + ++ + EG++ Y Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATIHQFDSHRVSLYRSVRKQIDEGRQVYI 484 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 + P I+E ++ + +++ E + + E F + +HG+M +K++ M F +G ++++ Sbjct: 485 VYPLIKESEKIDLKNLEEGYLHICEEFPDCRVCKVHGKMKPAEKDAQMQLFVSGEAQIMV 544 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S CIL+ L++++ Sbjct: 545 ATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCILVTGYKLAEDTRK 604 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKH 665 RL ++ T DGF IAE DLK R G++ G +QSG+ L IA LL+ R+ A+ Sbjct: 605 RLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLLQYVREVAQT 664 Query: 666 ILTQDPD 672 I+ +DP+ Sbjct: 665 IVDKDPN 671 >gi|326803889|ref|YP_004321707.1| ATP-dependent DNA helicase RecG [Aerococcus urinae ACS-120-V-Col10a] gi|326651420|gb|AEA01603.1| ATP-dependent DNA helicase RecG [Aerococcus urinae ACS-120-V-Col10a] Length = 679 Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 236/666 (35%), Positives = 379/666 (56%), Gaps = 37/666 (5%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P+S GVG K + L ++ DLL P + D + I E+++ + T Sbjct: 7 PVSVLTGVGPKKAALLKRL------KIESIYDLLCQFPFRYEDLSVK-SIQELADNQKAT 59 Query: 72 ITGYISQH---SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 + G + S F+ +K L I + FF LK +I + G Sbjct: 60 LKGRVVTEPVVSYFRGRKGNRLHFRLQVDHEIINVNFF--NQAYLKRQIHSQEEILIYGT 117 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPE 187 + + +++ + I +S+D +VY GLS +++I AL + +PE Sbjct: 118 YEAKRQQLLGIK--LINFSSEDNE---TASVYHTTKGLSQSALRQLIKTALDQYEDQIPE 172 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247 I ++L ++ +A ++H P D + AR ++ Y EL L +R Q+ Sbjct: 173 LIPEELSRRYQLIPHRQAIRLMHFPNTEAD---SQHARRQIKYQELF-----LYSLRIQW 224 Query: 248 KK------EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +K E G+ I + ++ +R+IPF T+ Q+ I +D+ Q M R+LQGD Sbjct: 225 RKLNQRYQEAGVQILYDNDQLKEFIRSIPFELTQGQKEVTNQICRDLLQPYPMNRLLQGD 284 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VALIA+AAAV AG Q +M P ILA+QH++ + Q T + ++TG+ Sbjct: 285 VGSGKTIVALIALAAAVSAGFQGALMVPTEILAEQHFKEAQSIYQATGLRCALLTGSTKG 344 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R++ L ++A G ++IGTHALFQ+ + + L LVI+DEQHRFGV+QR +L K T Sbjct: 345 KERKQILAQLAQGDLDLMIGTHALFQEDVHFKDLGLVIIDEQHRFGVKQRRQLIDKNTDR 404 Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 P+VL MTATPIPRTL +T +GD+++SK+ E PAGR+P+KT+ + +V LK L Sbjct: 405 HPNVLYMTATPIPRTLEITLMGDMEVSKLKELPAGRQPVKTLWLRPQEASQVDYLLKQEL 464 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSF 537 ++G++AY ICP + E ++ ++ + + F + ++HG++S+ +KE+VM ++ Sbjct: 465 AKGRQAYIICPLVGESEKVEAQNAEKIYADYQARFGDHYQVGLLHGQLSNEEKEAVMQAY 524 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 + T +LL+ATTV+EVG++V +AS+++I +A+HFGLAQLHQLRGRVGRG+ S C+LL Sbjct: 525 SDNTIQLLVATTVVEVGVNVPNASLMVILDADHFGLAQLHQLRGRVGRGQAASFCLLLAD 584 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 P ++N R+ ++ + DGF ++++DL+ R G+ G KQSG+P+F +A P +LE Sbjct: 585 PH-TENGKERMRIMTESNDGFYLSQQDLELRGAGDYFGTKQSGLPEFHLADPVEDGEILE 643 Query: 658 IARKDA 663 +R+DA Sbjct: 644 YSRQDA 649 >gi|323441002|gb|EGA98709.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus O11] Length = 686 Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 217/636 (34%), Positives = 359/636 (56%), Gaps = 24/636 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DL+ Y P+ + D +++ ++ VTI G + R K+ ++ I Sbjct: 37 DLVLYLPTRYEDNTV-IDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIA 95 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--------DVNFP 154 + + LK + ITV GK ++K I + +F NSQ DV Sbjct: 96 VKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEIT---GNRVFFNSQGTQTQENADVQ-- 150 Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 +E VY + G+ + I +AL+ + + EW+ +L +K ++ N +H+P+ Sbjct: 151 -LEPVYRIKEGIKQKQIRDQIRQALNDVTI-HEWLTDELREKYKLETLDFTLNTLHHPKS 208 Query: 215 AKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 +D AR A+ EL ++ + L R + + I I+ + + + +PF Sbjct: 209 KEDL---LRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDLDQVKSFIDRLPFEL 265 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T++Q+S++ DI +D+ RM R+LQGDVGSGKT+VA I M A AG Q+ +M P IL Sbjct: 266 TEAQKSSVNDIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEIL 325 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QH E + ++ + V ++TG++ R+ LE++ +G +IGTHAL QD + ++ Sbjct: 326 AEQHAESLIALFGDS-MNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFH 384 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 + LVI DEQHRFGV QR L +K +VL MTATPIPRTL ++ G++D+S I + P Sbjct: 385 NVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPK 444 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHE 512 GRKPI T + D+V+ ++ L +G++AY ICP IE + + ++VV + SL + Sbjct: 445 GRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQ 504 Query: 513 HF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 ++ S + ++HG++S +K+ VM F N +L++TTV+EVG++V +A+ ++I +A+ F Sbjct: 505 YYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRF 564 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631 GL+ LHQLRGRVGR ++ S C+L+ P ++ R++++ T DGF ++E DL+ R G Sbjct: 565 GLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPG 623 Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 + G+KQSG+P FL+A +LE+AR +A ++ Sbjct: 624 DFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELI 659 >gi|169342649|ref|ZP_02863691.1| ATP-dependent DNA helicase RecG [Clostridium perfringens C str. JGS1495] gi|169299155|gb|EDS81225.1| ATP-dependent DNA helicase RecG [Clostridium perfringens C str. JGS1495] Length = 690 Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 244/678 (35%), Positives = 377/678 (55%), Gaps = 46/678 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 ++ + +GVG K L+K+ +DLL Y P R Y +IS Sbjct: 16 IYDDIGLVKGVGPKLKERLNKV------GIFTVLDLLLYFP-----RDYEFLNDDIS--- 61 Query: 69 IVTITGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEML---------KNVF 117 + G S + K + Y I +G T+ F Y +++ K F Sbjct: 62 ---LNGDTSDEKAILKCKAKSYGSSIRTRNGKTLTTINFTYNNLKVIGKWFNQPYIKRNF 118 Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK KK+ N + +++P ++ N I +Y+L GL+ + K+I E Sbjct: 119 ILGNEYNLMGKFKKVNNTLEVINP---LIPCKEANKSEILPIYTLKNGLTNKILVKLINE 175 Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237 L + ++ E + ++++K S+ +A IH P + + A RL + EL Sbjct: 176 ILKNM-IIKENLPDEIVKKYKLISLDKAIRSIHFPAGRGELQ---SAINRLKFQELFTYS 231 Query: 238 IALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 + +++M+ KKE GI + + + + ++P++ T +Q +++IL D + M R Sbjct: 232 LKIIMMKAHIKKENSGISFKM-SPLLKDLKESLPYTLTNAQSRTLREILLDQKRNIAMNR 290 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 ++QGDVGSGKTLVALI+M G Q V+MAP ILA QHY KKY + +E++T Sbjct: 291 LVQGDVGSGKTLVALISMFNVYMNGYQTVLMAPTEILANQHYAEAKKYLDQFGVDIELLT 350 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G+ + +++ E+IA G+ ++IGTHAL QD ++ L LV+ DEQHRFGV+QR +L Sbjct: 351 GSTKEKEKKRIKEKIASGKEIMLIGTHALIQDDVELNNLGLVVTDEQHRFGVEQRSRLIN 410 Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERL 475 K VL+MTATPIPRTL L D+DIS I E P GRKPI T+++ +N R+ L Sbjct: 411 KNKRADVLVMTATPIPRTLSLYLYSDLDISIIDELPPGRKPIDTMLVDMNQRMKAYNFAL 470 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESV 533 K V +G++ Y + P IEE ++ N SV + + L I I+HG+M+ +K+ + Sbjct: 471 KEV-EKGRQFYIVSPLIEENEKLNLNSVEKIYEELKNGIFKDVRIEILHGKMAGKNKDKI 529 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 +++FKNG K +I+TTVIEVG++V +++++IIENAE FGLAQLHQLRGRVGRGE S CI Sbjct: 530 INTFKNGEIKGIISTTVIEVGVNVPNSTMMIIENAERFGLAQLHQLRGRVGRGEHKSYCI 589 Query: 594 LLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 L+ + +KN T R+ ++ + DGF IAEEDLK R GE+ G++Q G F++A Sbjct: 590 LIAN---TKNDITRRRMEIMTESSDGFYIAEEDLKLRGAGEVFGMRQHGDEGFILANVVD 646 Query: 652 HDSLLEIARKDAKHILTQ 669 ++L+ A +AK I+ Sbjct: 647 DINILKCANHEAKLIVNN 664 >gi|153004936|ref|YP_001379261.1| ATP-dependent DNA helicase RecG [Anaeromyxobacter sp. Fw109-5] gi|152028509|gb|ABS26277.1| ATP-dependent DNA helicase RecG [Anaeromyxobacter sp. Fw109-5] Length = 908 Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 226/639 (35%), Positives = 344/639 (53%), Gaps = 11/639 (1%) Query: 45 LFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITL 103 L + P ++ DR +I E+ + G + +++ RP K+ L+D +G + L Sbjct: 245 LEFFPKAYQDRTQVRRIVELRAGDEGIVHGTVGHVRVQRMRNGRPLLKVGLSDPSGALEL 304 Query: 104 LFFYRKTEMLKNVFFEGRKITVTGKIKK-LKNRIIMVHPHYIFHNSQD-VNFPLIEAVYS 161 +FF + F G + +GK+ + R M P + D +F I +Y+ Sbjct: 305 VFFNPPPWRARQ-FAAGDALLCSGKVTEGFGRRFQMSQPEVEKLQAGDSASFGRIVPIYA 363 Query: 162 LPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF-- 218 P +K++ + P+ + + + ++ S AEA H P D Sbjct: 364 GPADYQHPALRKLVKRLVDEYAPLAVDDLPPQVRARRGLLSRAEALRDAHFPGAGTDLVA 423 Query: 219 --EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276 E +P RL ++EL Q+AL L R+ + E GI + + L +PF T + Sbjct: 424 AAERATPGFRRLVFEELFFLQLALALRRRGVRAEAGIAFDASPAAIARALELLPFRLTGA 483 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q A+ +I +DM++ M R+LQGDVGSGKT VA AM AV +G QA IM P +LA+Q Sbjct: 484 QARALDEIARDMARPEPMNRLLQGDVGSGKTAVAFAAMMLAVRSGHQAAIMVPTELLAEQ 543 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 H + + Q T + V ++ +++ R+A G A I +GTHAL + + + +L Sbjct: 544 HARTLAGWLQGTGVEVALVAAAARGKGQKETRARVADGTARIAVGTHALLEQDVAFERLG 603 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 LV+VDEQHRFGV QR KL K P VL+MTATPIPRTL L GD+D SKI E P GR Sbjct: 604 LVVVDEQHRFGVLQRAKLISKGHRPDVLVMTATPIPRTLALAFYGDLDQSKIGELPPGRT 663 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 P+ T + ++ E + L G++ Y + P + E ++S+ L F Sbjct: 664 PVATKVYGDSQRRGAYEVARRELEAGRQVYVVYPLVAESEKSDLADATSGAEELRRVFAG 723 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + ++HG++ +K++VMD F+ G ++L+ATTVIEVG+DV +AS++I+E+AE FGL+Q Sbjct: 724 HEVGLLHGKLKADEKQAVMDRFRTGALRVLVATTVIEVGVDVPNASVMIVEHAERFGLSQ 783 Query: 576 LHQLRGRVGRGEEISSCILLYH-PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 LHQLRGRVGRG S C+L+ H + + RL + T+DGF +A DL+ R GE+L Sbjct: 784 LHQLRGRVGRGAARSHCLLIAHFKRVGDEARERLQAMAETQDGFEVARVDLRIRGPGELL 843 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 G +QSG F IA +++LE AR+DA ++ DP+L Sbjct: 844 GTRQSGQKLFEIADLYRDEAILEEAREDAFALVDADPEL 882 >gi|110799799|ref|YP_696417.1| ATP-dependent DNA helicase RecG [Clostridium perfringens ATCC 13124] gi|110674446|gb|ABG83433.1| ATP-dependent DNA helicase RecG [Clostridium perfringens ATCC 13124] Length = 690 Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 245/678 (36%), Positives = 377/678 (55%), Gaps = 46/678 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 ++ + +GVG K L+K+ +DLL Y P R Y +IS Sbjct: 16 IYDDIGLVKGVGPKLKERLNKV------GIFTVLDLLLYFP-----RDYEFLNDDIS--- 61 Query: 69 IVTITGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEML---------KNVF 117 + G S + K + Y I +G T+ F Y +++ K F Sbjct: 62 ---LNGDTSDEKAILKCKVQSYGSSIRTRNGKTLTTINFTYNNLKVIGKWFNQPYIKRNF 118 Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK KK+ N + +++P ++ N I +Y+L GL+ + K+I E Sbjct: 119 ILGNEYNLMGKFKKVNNTLEVINP---LIPCKEANKSEILPIYTLKNGLTNKILVKLINE 175 Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237 L + ++ E + ++++K S+ +A IH P + + A RL + EL Sbjct: 176 ILKNM-IIKENLPDEIVKKYKLISLDKAIRSIHFPAGRGELQ---SAINRLKFQELFTYS 231 Query: 238 IALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 + +++M+ KKE GI + + + + ++P++ T +Q +++IL D + M R Sbjct: 232 LKIIMMKAHIKKENSGISFKM-SPLLKDLKESLPYTLTNAQSRTLREILLDQKRNIAMNR 290 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 ++QGDVGSGKTLVALI+M G Q V+MAP ILA QHY KKY + +E++T Sbjct: 291 LVQGDVGSGKTLVALISMFNVYINGYQTVLMAPTEILANQHYAEAKKYLDKFGVDIELLT 350 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G+ + +++ E+IA G+ ++IGTHAL QD ++ L LV+ DEQHRFGV+QR +L Sbjct: 351 GSTKEKEKKRIKEKIASGKEIMLIGTHALIQDDVELNNLGLVVTDEQHRFGVEQRSRLIN 410 Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERL 475 K VL+MTATPIPRTL L D+DIS I E P GRKPI T+++ +N R+ L Sbjct: 411 KNKRADVLVMTATPIPRTLSLYLYSDLDISIIDELPPGRKPIDTMLVDMNQRMKAYNFAL 470 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESV 533 K V +G++ Y + P IEE ++ N SV + + L I I+HG+M+ DK+ + Sbjct: 471 KEV-EKGRQFYIVSPLIEENEKLNLNSVEKIYEELKNGIFKDIRIEILHGKMAGKDKDKI 529 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 +++FKNG K +I+TTVIEVG++V +++++IIENAE FGLAQLHQLRGRVGRGE S CI Sbjct: 530 INTFKNGEIKGIISTTVIEVGVNVPNSTMMIIENAERFGLAQLHQLRGRVGRGEHKSYCI 589 Query: 594 LLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 L+ + +KN T R+ ++ + DGF IAEEDLK R GE+ G++Q G F++A Sbjct: 590 LIAN---TKNDITRRRMEIMTESSDGFYIAEEDLKLRGAGEVFGMRQHGDEGFILANVVD 646 Query: 652 HDSLLEIARKDAKHILTQ 669 ++L+ A +AK I+ Sbjct: 647 DINILKCANHEAKLIVNN 664 >gi|297184106|gb|ADI20225.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11] Length = 696 Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 244/700 (34%), Positives = 380/700 (54%), Gaps = 33/700 (4%) Query: 11 APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI-SEERI 69 +P+ G+G + L++ G +FI+ ++P ++D+ I + + Sbjct: 6 SPIVYAPGIGPDRAALLAE--EFGIRTIAQFIE---HYPFRYVDKSQFHTIGSLHAHSGE 60 Query: 70 VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 V I G I + ++R DG G I L++F + + +K + V GK+ Sbjct: 61 VQIKGQIVKIDELGAPRQRRLVATFTDGEGFIELVWF-KGAKWVKKSLKPNTPMVVYGKM 119 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVEALSR-LP 183 + + HP I+ SQ V +E VYS GL+ +++ E L + L Sbjct: 120 NDFNGKKSLPHPE-IYAPSQ-VEDSAVEPVYSTTEKLTKRGLNSKGIARVMKEVLKKELG 177 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 E + K S +A N IH P A+ E AR+R+ ++E Q L Sbjct: 178 QFEETFSEAFRTKHQLISKIQALNWIHFPPSAQHLE---AARKRIKFEEFFFLQ--LTQQ 232 Query: 244 RKQFKKEIGIPINVEGKIAQKILR----NIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 R + +++ I ++ Q L ++PF T++Q+ +K+I D+ +M R++Q Sbjct: 233 RNKLRQKTAIKGYTFKEVGQFFLNFYSNHLPFKLTQAQKRVVKEIRGDVRTGAQMNRLVQ 292 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT+VAL+AM A++ G QA +MAP ILA QHY +K+ I V ++TG+ Sbjct: 293 GDVGSGKTIVALLAMLLAIDNGYQAALMAPTEILATQHYNGLKELCDPAGISVALLTGST 352 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 P A R + + G I+IGTHAL + ++++ L L ++DEQHRFGV QR KL +K Sbjct: 353 PAARRAEIHTGLKEGSLQILIGTHALIEPTVKFANLGLAVIDEQHRFGVAQRAKLWKKNE 412 Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV-IIPINRIDEVIERLKV 477 PHVL+MTATPIPRTL ++ GD+DIS I E P GRKP+KT+ + NR+ ++ ++ Sbjct: 413 HPPHVLVMTATPIPRTLAMSVYGDLDISVIDELPPGRKPVKTLHLFDKNRL-KLNGFMQR 471 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVM 534 ++ G++ Y + P IEE ++ + +++ + L F IA++HGRMS +KE M Sbjct: 472 EIAAGRQVYVVFPLIEESEKLDLKNLEVGYEQLLRDFPRPQYQIAVVHGRMSAAEKEGEM 531 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F G +++ATTVIEVG++V +AS+++IENAE FGL+QLHQLRGRVGRG + S CIL Sbjct: 532 QRFAKGKANIMVATTVIEVGVNVPNASVMVIENAERFGLSQLHQLRGRVGRGSDESYCIL 591 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 + LS ++ TRL + T DGF IAE D++ R G+++G +QSG +F +A Sbjct: 592 VSSFKLSSDAKTRLETMVRTSDGFEIAEVDMQLRGPGDLMGTRQSGQLQFKLASLLNDGP 651 Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIR---ILLYLYQYN 691 +L ++ + +L D L QSI+ I LY Q+ Sbjct: 652 ILNWTKEVVEQLLRNDAQLIHPDHQSIKSRWIELYKDQWG 691 >gi|193212054|ref|YP_001998007.1| ATP-dependent DNA helicase RecG [Chlorobaculum parvum NCIB 8327] gi|193085531|gb|ACF10807.1| ATP-dependent DNA helicase RecG [Chlorobaculum parvum NCIB 8327] Length = 710 Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 232/698 (33%), Positives = 374/698 (53%), Gaps = 40/698 (5%) Query: 3 PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62 PS P+ + L + +GVG K + L++ A DL Y P ++DR +I+ Sbjct: 2 PSSSVPI-SSLQSIKGVGPKRAAVLAE------AGIRSVADLYDYFPRRYLDRTVIRRIA 54 Query: 63 EISE-ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 ++ + E + + + R +K ++DG+G + L +F R G Sbjct: 55 QLRDGESVTVVGTVTGTRLEGGGRGRGRFKATVSDGSGVLELTWF-RSVHYFSKSIHSGD 113 Query: 122 KITVTGKIKKLKNRIIMVHPHY--IFHNSQDVN------------------FPLIEAVYS 161 + V G++ M HP Y + + +D +P +A+ Sbjct: 114 MLAVHGRVSFFGRTPGMQHPDYDRLGGSGEDGRAEGSADGELYKTGGIIPLYPTSDAMKQ 173 Query: 162 LPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220 G++ + I+ A + P + E++ ++++ I EA+ +H P A+ E Sbjct: 174 --GGVNSGTLRAIVHRAFRDQPPRITEYLTPEIMEAYGLMPIGEAYRQLHFPDSAELLER 231 Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQES 279 AR R+ + EL Q+ L R + ++ + G + +PF T Q+ Sbjct: 232 ---ARYRMKWSELFFAQLFFALRRTEERRSLTSARFERSGDKTAGLHERLPFEMTGDQKR 288 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 A+K+I D+ ++M R++QGDVGSGKTLVA AM AV+ G QA MAP ILA QHY Sbjct: 289 AVKEIYHDLRSGHQMNRLVQGDVGSGKTLVAQFAMTLAVDNGLQAAFMAPTEILAFQHYI 348 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 +K+ + + V ++TG + R + L R+ G+ I +GTHA+ + +++ +L L I Sbjct: 349 GLKQVLEPLGVTVALLTGRQKKKLREEQLARLESGEIDIAVGTHAIIEAGVRFRRLGLAI 408 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 +DEQHRFGV QR L KA PHVLLMTATPIPRTL + GD+D+S I E PAGR+PI+ Sbjct: 409 IDEQHRFGVMQRKALQDKAENPHVLLMTATPIPRTLTMGIYGDLDVSIIAEMPAGRQPIQ 468 Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-S 517 T + ++ E+ L+ ++EG++AY + P +EE ++ + ++ E + L E F Sbjct: 469 TRLCREDQKPELYRLLRKQIAEGRQAYIVYPLVEESEKMDLKAATESYEQLRGEVFPELR 528 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 + +IHG++ +KE+VM +F++G +L+ TTVIEVG+DV +A++++IE+AE FG++QLH Sbjct: 529 LGLIHGKLPAEEKEAVMAAFRSGELDILVGTTVIEVGVDVPNATVMVIEHAERFGISQLH 588 Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637 QLRGRVGRG SSC L+Y ++ ++ RL + T DGF ++E DL+ R G +LG + Sbjct: 589 QLRGRVGRGTHRSSCYLVY-AKMAGDAKERLQAMAATNDGFRLSEIDLQLRGAGNMLGRE 647 Query: 638 QSGMPKFL-IAQPELHDSLLEIARKDAKHILTQDPDLT 674 QSG L IA ++ AR A ++ +D L+ Sbjct: 648 QSGTASSLRIADLMTDGEIMRSARAAAFELVEKDETLS 685 >gi|302036761|ref|YP_003797083.1| ATP-dependent DNA helicase [Candidatus Nitrospira defluvii] gi|190343176|gb|ACE75564.1| ATP-dependent DNA helicase [Candidatus Nitrospira defluvii] gi|300604825|emb|CBK41157.1| ATP-dependent DNA helicase [Candidatus Nitrospira defluvii] Length = 846 Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 233/719 (32%), Positives = 386/719 (53%), Gaps = 41/719 (5%) Query: 1 MRPSFLNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP 59 +R S PL+ + +GVG K +L L ++ A+ L+ P + DR Sbjct: 123 VRSSPARPLWELSIQYAKGVGPKRTLLLERL----GAHTVE--QALWTLPWRYEDRSVIT 176 Query: 60 KISEISEERIVTITGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVF 117 ++E+ ++ G I++ + + + RR + + D TG + +FF + L++V Sbjct: 177 PVAELVPGATRSVCGVITRTEATRARVRRLSILDVAVQDATGTVHAVFFNQP--YLEDVL 234 Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHY----IFHNSQD--VNFPLIEAVYSLPTGLSVDLF 171 EG ++ ++G++ + V + +D ++ I ++Y G + Sbjct: 235 KEGLRVMMSGRVAAGRGGWTEVRLEATQFEVLGGGEDELLHVGRIVSIYHETKGWTSRQM 294 Query: 172 KKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARE 226 + ++ L+ + E + + + P I EA +H P D + + A Sbjct: 295 RILMQGLLAEYGADMEEVLPLSVRARHRLPPIGEAIQQVHFPLPKTDLTALDQGVTSAHR 354 Query: 227 RLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285 RL ++ELL Q A++L +++ K+E N +++ + +PF+ T +QE +I Sbjct: 355 RLVFEELLLLQAAIVLRQREMKEEPKAFRFNPHVSQLKQLAKVLPFALTSAQERVFHEIQ 414 Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345 DM M R++QGDVGSGKT+VAL A+ A +G Q +M P ILA+QHY + Sbjct: 415 ADMVSSRPMNRLVQGDVGSGKTVVALHALVMACGSGCQTALMVPTEILAEQHYLNLAPLL 474 Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405 + + ++T R + L+++ G A + IGTHAL Q +++ +L LVIVDEQH+ Sbjct: 475 EAVGLKAVLLTSGGKAKDRNETLKQLESGAAQVAIGTHALIQKKVRFARLGLVIVDEQHK 534 Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465 FGV QR L +K P VL+MTATPIPRTL +T GD+D+S I P GRKP++T++ Sbjct: 535 FGVLQRKTLLEKGYRPDVLVMTATPIPRTLAMTVYGDLDVSVIDMLPPGRKPVRTLLYTD 594 Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHG 523 + + + + L G++ Y + P +EE ++ + ++ ++ L + + ++HG Sbjct: 595 GQRHKTWQLVGDELKAGRQVYIVYPLVEESEKVDLKAAIQGAEHLQREIFPQARVGLLHG 654 Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583 R+ +KE M +FK GT ++L+ATTVIEVG+DV +A++++IE+AE FGLAQLHQLRGRV Sbjct: 655 RLPTAEKERTMAAFKAGTIQVLVATTVIEVGVDVPNATVMVIEHAERFGLAQLHQLRGRV 714 Query: 584 GRGEEISSCILL-------YHPPLSKN---------SYTRLSVLKNTEDGFLIAEEDLKQ 627 GRG + S CIL+ +S++ + RL+ L N+ DGF+IAEEDL+ Sbjct: 715 GRGAQQSLCILMATYLAREARARVSRDGRPEENVSGAQQRLAALVNSNDGFVIAEEDLRI 774 Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686 R GE LG++Q G+P+F A LLE AR++A +L QDP LT + Q+ + ++ Sbjct: 775 RGPGEFLGLRQWGVPEFRAANLVRDAQLLEQARQEAVALLEQDPGLTLPQHQAFKAAMF 833 >gi|116671056|ref|YP_831989.1| DEAD/DEAH box helicase domain-containing protein [Arthrobacter sp. FB24] gi|116611165|gb|ABK03889.1| ATP-dependent DNA helicase RecG [Arthrobacter sp. FB24] Length = 756 Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 246/756 (32%), Positives = 383/756 (50%), Gaps = 92/756 (12%) Query: 17 RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76 R +GK+ + + K + T LL Y P ++ R ISE+ + VT+ + Sbjct: 11 RRIGKRSAAVIEKHLGI-----TTVGGLLNYFPRRYLSRGELTPISEVPLDEEVTLIARV 65 Query: 77 SQHSSFQLQKRRPY--KILLND---------------------GTGEITLLFFYR-KTEM 112 +S+ ++ RR +++ D GT +++ YR K E+ Sbjct: 66 VSNSTRAMRARRGTLTDVVITDDSATNHNSHGSAGRLPGAGVPGTLKVSFFNGYRAKAEL 125 Query: 113 LKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA---------VYSLP 163 L GR+ +GK+ + + + +P ++ + +D + P ++ VY Sbjct: 126 LP-----GRRAMFSGKVTRYGGSLSLTNPDFLLLD-EDPDTPGMDPEKLAAMPIPVYPAT 179 Query: 164 TGLSVDLFKKIIVEALSRLPVLPEW--IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221 L+ +K+I L + + + + ++ F EA+ +IH P D++ Sbjct: 180 AKLTSWSIQKVISTLLDTVDLDVLDDPVPAGVSAREKFLPAPEAYRLIHTPEVPGDWQR- 238 Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESA 280 AR+R Y E L Q AL R Q E V I R +PF+ T Q + Sbjct: 239 --ARDRFRYQEALVLQAALARRRAQLAAEEATARRPVTDGILTAFDRQLPFTLTAGQSAV 296 Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340 K + +++SQ + M R+LQG+VGSGKT+VAL AM V+AGGQA ++AP +LA QH+E Sbjct: 297 GKTLAEELSQDSPMNRLLQGEVGSGKTIVALRAMLQVVDAGGQAALLAPTEVLAAQHFES 356 Query: 341 IKKY------------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 I++ + + V ++TG+MP A R++A+ A G A I+IGTHAL D Sbjct: 357 IRRTLGPLSRDGLLGGSGPDTVQVTMLTGSMPTAARKQAMLDAASGTAGIVIGTHALLSD 416 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISK 447 ++ +Y L L++VDEQHRFGV+QR L KA+ PH+L+MTATPIPRT+ +T GD++ S Sbjct: 417 NVSFYDLGLIVVDEQHRFGVEQRDALRAKASKPPHLLVMTATPIPRTVAMTVFGDLETSV 476 Query: 448 ITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR-- 501 + E PAGR PI T ++ + + R + + G + Y +CP+I E + +F Sbjct: 477 LDELPAGRAPISTHVVGLAENPGWAGRIWSRSREEIDAGHQVYVVCPKIGEDDDGDFSPG 536 Query: 502 ----------------------SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 SVVE +A +HGR + K + M SF Sbjct: 537 EAEPSAADLEGDGPARELASVTSVVEHLQDEPALAGVPLAPLHGRQDPVLKSATMASFTA 596 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 KLL++TTVIEVG+DV +A++++I +A+ FG++QLHQLRGRVGRG +C+L+ Sbjct: 597 NETKLLVSTTVIEVGVDVHNATLMVILDADRFGISQLHQLRGRVGRGGLPGTCLLVTTLE 656 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEI 658 S RL + T DGF +++EDLK R+EG+ILG QSG L + + H++++ Sbjct: 657 PGHPSRRRLDAVAATTDGFELSQEDLKLRREGDILGASQSGGRSTLKLLRVLEHEAVIAK 716 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694 AR+DA+ I+ DP LT + I YL EAF Sbjct: 717 ARQDAQQIVAADPGLTDHSALAEAIDEYLNPEKEAF 752 >gi|27467820|ref|NP_764457.1| ATP-dependent DNA helicase [Staphylococcus epidermidis ATCC 12228] gi|251810657|ref|ZP_04825130.1| DNA helicase RecG [Staphylococcus epidermidis BCM-HMP0060] gi|282876341|ref|ZP_06285208.1| ATP-dependent DNA helicase RecG [Staphylococcus epidermidis SK135] gi|38605283|sp|Q8CSV3|RECG_STAES RecName: Full=ATP-dependent DNA helicase recG gi|27315364|gb|AAO04499.1|AE016746_289 ATP-dependent DNA helicase [Staphylococcus epidermidis ATCC 12228] gi|251805817|gb|EES58474.1| DNA helicase RecG [Staphylococcus epidermidis BCM-HMP0060] gi|281295366|gb|EFA87893.1| ATP-dependent DNA helicase RecG [Staphylococcus epidermidis SK135] gi|329736224|gb|EGG72496.1| ATP-dependent DNA helicase RecG [Staphylococcus epidermidis VCU028] Length = 682 Score = 362 bits (928), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 222/662 (33%), Positives = 363/662 (54%), Gaps = 26/662 (3%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L +G+G K L ++ N DL+ Y P+ + D +++ ++ VT+ Sbjct: 13 LDKIKGIGPKRLALLEEL------NIKSVEDLVLYLPTRYEDNTV-IDLNQADDQATVTV 65 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G + + R K+ ++ I + + LK +T+ GK + Sbjct: 66 QGEVYSSPTVAFFGRNKSKLTVHLMINHIAVKCVFFNQPYLKKKLELNSIVTIKGKWNRN 125 Query: 133 KNRIIMVHPHYIF----HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188 K I + + IF N +D + +E +Y + G+ + I +ALS + + EW Sbjct: 126 KQEI---NGNRIFFKDQKNQEDTH---LEPIYRIKEGIKQKQLRDNIRQALSDVTI-HEW 178 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQF 247 + DL +K ++A +H+P ++ AR A+ EL ++ + L R + Sbjct: 179 LTDDLREKYKLETLAYTIQTLHHPINKQNL---LRARRTYAFTELFMFELRMQWLNRLEK 235 Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 + I IN + ++ + ++PF T +Q+ ++ +I +D+ RM R+LQGDVGSGKT Sbjct: 236 TSDEAIEINYDINKVKQFIDSLPFELTDAQKVSVNEIFRDLKAPIRMHRLLQGDVGSGKT 295 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +VA I M A AG Q+ +M P ILA+QH E + + NT + V ++TG++ RR Sbjct: 296 VVAAICMYALKTAGYQSALMVPTEILAEQHAESLIQLFGNT-MNVALLTGSVKGKKRRLL 354 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 LE++ +G +IGTHAL QD + + + LVI DEQHRFGV QR L +K +VL MT Sbjct: 355 LEQLENGTIDCLIGTHALIQDDVVFNNVGLVITDEQHRFGVNQRQILREKGAMTNVLFMT 414 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL ++ G++D+S I + P GRKPIKT + D+V+ ++ L +G++AY Sbjct: 415 ATPIPRTLAISVFGEMDVSSIKQLPKGRKPIKTSWAKHEQYDQVLAQMSNELKKGRQAYV 474 Query: 488 ICPQIEEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545 ICP IE + + ++VV + SL + + ++HG+MS DK+ VM F +L Sbjct: 475 ICPLIESSEHLEDVQNVVALYESLQSDYGNEKVGLLHGKMSAEDKDQVMQKFSKHEIDIL 534 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 ++TTV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E S C+L+ P ++ Sbjct: 535 VSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGI 593 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665 R++++ T DGF ++E DL+ R G+ G+KQSG+P FL+A +LE+AR +A Sbjct: 594 ERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANVVEDYRMLEVARDEAAE 653 Query: 666 IL 667 ++ Sbjct: 654 LI 655 >gi|293366808|ref|ZP_06613484.1| DNA helicase RecG [Staphylococcus epidermidis M23864:W2(grey)] gi|291319109|gb|EFE59479.1| DNA helicase RecG [Staphylococcus epidermidis M23864:W2(grey)] gi|329736575|gb|EGG72841.1| ATP-dependent DNA helicase RecG [Staphylococcus epidermidis VCU045] Length = 682 Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 222/662 (33%), Positives = 363/662 (54%), Gaps = 26/662 (3%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L +G+G K L ++ N DL+ Y P+ + D +++ ++ VT+ Sbjct: 13 LDKIKGIGPKRLALLEEL------NIKSVEDLVLYLPTRYEDNTV-IDLNQADDQATVTV 65 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G + + R K+ ++ I + + LK +T+ GK + Sbjct: 66 QGEVYSSPTVAFFGRNKSKLTVHLMINHIAVKCVFFNQPYLKKKLELNSIVTIKGKWNRN 125 Query: 133 KNRIIMVHPHYIF----HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188 K I + + IF N +D + +E +Y + G+ + I +ALS + + EW Sbjct: 126 KQEI---NGNRIFFKDQKNQEDTH---LEPIYRIKEGIKQKQLRDNIRQALSDVTI-HEW 178 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQF 247 + DL +K ++A +H+P ++ AR A+ EL ++ + L R + Sbjct: 179 LTDDLREKYKLETLAYTIQTLHHPINKQNL---LRARRTYAFTELFMFELRMQWLNRLEK 235 Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 + I IN + ++ + ++PF T +Q+ ++ +I +D+ RM R+LQGDVGSGKT Sbjct: 236 TSDEAIEINYDINKVKQFIDSLPFELTDAQKVSVNEIFRDLKAPIRMHRLLQGDVGSGKT 295 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +VA I M A AG Q+ +M P ILA+QH E + + NT + V ++TG++ RR Sbjct: 296 VVAAICMYALKTAGYQSALMVPTEILAEQHAESLIQLFGNT-MNVALLTGSVKGKKRRLL 354 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 LE++ +G +IGTHAL QD + + + LVI DEQHRFGV QR L +K +VL MT Sbjct: 355 LEQLENGTIDCLIGTHALIQDDVVFNNVGLVITDEQHRFGVNQRQILREKGAMTNVLFMT 414 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL ++ G++D+S I + P GRKPIKT + D+V+ ++ L +G++AY Sbjct: 415 ATPIPRTLAISVFGEMDVSSIKQLPKGRKPIKTSWAKHEQYDQVLAQMSNELKKGRQAYV 474 Query: 488 ICPQIEEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545 ICP IE + + ++VV + SL + + ++HG+MS DK+ VM F +L Sbjct: 475 ICPLIESSEHLEDVQNVVALYESLQSDYGNEKVGLLHGKMSAEDKDQVMQKFSEHEIDIL 534 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 ++TTV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E S C+L+ P ++ Sbjct: 535 VSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGI 593 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665 R++++ T DGF ++E DL+ R G+ G+KQSG+P FL+A +LE+AR +A Sbjct: 594 ERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANVVEDYRMLEVARDEAAE 653 Query: 666 IL 667 ++ Sbjct: 654 LI 655 >gi|223043764|ref|ZP_03613807.1| ATP-dependent DNA helicase RecG [Staphylococcus capitis SK14] gi|222442861|gb|EEE48963.1| ATP-dependent DNA helicase RecG [Staphylococcus capitis SK14] Length = 682 Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 219/660 (33%), Positives = 369/660 (55%), Gaps = 22/660 (3%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L +G+G K L ++ N N DL+ Y P+ + D +++ ++ VT+ Sbjct: 13 LDKIKGIGPKRLTILEEL----NINTVE--DLVLYLPTRYEDNTV-IDLNQAEDQSTVTV 65 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITL-LFFYRKTEMLKNVFFEGRKITVTGKIKK 131 G + + R K+ ++ I + F+ + + K + G +TV GK + Sbjct: 66 QGEVYSTPAVAFFGRNKSKLTVHIMVNNIAVKCVFFNQPYLKKKIELHG-TVTVKGKWNR 124 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190 K I + + +F N Q + +E VY + G+ + I +AL + + EW+ Sbjct: 125 AKQEI---NGNRMFFNEQTTQDDVQLEPVYRIKEGIKQKQIRDNIRQALEDVTI-HEWLS 180 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKK 249 DL +K ++ +H+P KD + AR A+ EL ++ + L R + Sbjct: 181 DDLREKYKLETLEYTLRTLHHP---KDKQSLLKARRTYAFTELFMFELRMQWLNRLEKSS 237 Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309 + I I+ + ++ + +PF T +Q++++ +I +D+ RM R+LQGDVGSGKT+V Sbjct: 238 DEAIEIDYDISKVKQFINRLPFELTDAQKTSVNEIFRDLKAPIRMHRLLQGDVGSGKTVV 297 Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369 A I M A AG Q+ +M P ILA+QH E + + +T + V ++TG++ RR LE Sbjct: 298 AAICMYALKTAGFQSALMVPTEILAEQHAESLIELFGDT-MNVALLTGSVKGKKRRILLE 356 Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429 ++ +G +IGTHAL QD + + + LVI DEQHRFGV QR L +K +VL MTAT Sbjct: 357 QLENGSIDCLIGTHALIQDDVVFENVGLVITDEQHRFGVNQRQMLREKGAMTNVLFMTAT 416 Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489 PIPRTL ++ G++D+S I + P GRKPI T + ++V+ ++ L +G++AY IC Sbjct: 417 PIPRTLAISVFGEMDVSSIKQLPKGRKPIITSWAKHEQYEQVLAQMTSELRKGRQAYVIC 476 Query: 490 PQIEEKKE-SNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 P IE + + ++VV + SL E++ + + ++HG+++ +K+ VM F + +L++ Sbjct: 477 PLIESSEHLEDVQNVVALYESLQEYYGAEKVGLLHGKLTSDEKDEVMQRFSDKDIDILVS 536 Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607 TTV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E S C+L+ P ++ R Sbjct: 537 TTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIER 595 Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 ++++ T DGF ++E DL+ R G+ G+KQSG+P FL+A +LE+AR +A ++ Sbjct: 596 MTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANVVEDYRMLEVARDEAAELI 655 >gi|224476339|ref|YP_002633945.1| ATP-dependent DNA helicase RecG [Staphylococcus carnosus subsp. carnosus TM300] gi|222420946|emb|CAL27760.1| putative ATP-dependent DNA helicase RecG [Staphylococcus carnosus subsp. carnosus TM300] Length = 685 Score = 361 bits (927), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 221/662 (33%), Positives = 363/662 (54%), Gaps = 23/662 (3%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L +G+G K L+++ N N DL+ Y P + D ++E ++ VT+ Sbjct: 13 LEQIKGLGPKRIAVLNEL-NIYNVE-----DLVLYLPVRYEDNSI-VDLNEAEDQSTVTV 65 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 TG + + R K+ ++ I + + LK +TV GK + Sbjct: 66 TGEVYSTPTVAFFGRNRSKVTVHLMINNIAVKAVFFNQPYLKKKINLHDHVTVKGKWNRA 125 Query: 133 KNRIIMVHPHYIF----HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188 K I + +F + Q+ + ++ VY + G+ + II + L + + EW Sbjct: 126 KQEI---NGMRMFTTGSEDLQNADGEQLDPVYRIKEGIKQKTMRDIIRKVLDDIEI-REW 181 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQF 247 + DL +K S+A +H K+ AR A+ EL ++ + L R + Sbjct: 182 LSDDLREKYKLESLATTIRALHYADNKKEL---LKARRTYAFTELFLFELRMQWLNRLEK 238 Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 + I IN + +K + ++PF T +Q+ ++ +I +D+ RM R+LQGDVGSGKT Sbjct: 239 ASDEAIEINYDLAEVKKFIDDLPFELTDAQKHSVNEIFRDLKAPLRMHRLLQGDVGSGKT 298 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +VA + M A AG Q+ +M P ILA+QH E + + + ++ V ++TG++ R+ Sbjct: 299 VVAALCMFALKTAGYQSALMVPTEILAEQHAESLTELFGD-RMNVALLTGSVKGKKRKLL 357 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 LE++ +G +IGTHAL QD + + + LVI DEQHRFGV QR L +K +VL MT Sbjct: 358 LEQLENGTIDCLIGTHALIQDDVSFQNVGLVITDEQHRFGVNQRQALREKGAMTNVLFMT 417 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL ++ G++D+S I + P GRKPIKT+ + D V+ ++ L +G++AY Sbjct: 418 ATPIPRTLAISVFGEMDVSSIKQLPKGRKPIKTMWAKHEQYDTVLNQMTSELEKGRQAYV 477 Query: 488 ICPQIEEKKE-SNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLL 545 ICP IE + + ++VV + SL EH+ + + ++HG+M +K+ VM F +L Sbjct: 478 ICPLIESSEHLEDVQNVVALYESLEEHYGAGRVGLLHGKMPADEKDDVMQRFNRHEIDIL 537 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 ++TTV+EVG++V +A+ +II +A+ FGL+ LHQLRGRVGR + S C+L+ P ++ Sbjct: 538 VSTTVVEVGVNVPNATFMIIYDADRFGLSTLHQLRGRVGRSDHQSYCVLIASPK-TETGI 596 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665 R++++ T DGF ++E DL+ R G+ G+KQSG+P FL+A +LE+AR +A Sbjct: 597 ERMNIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANIVEDYRMLEVARDEAGE 656 Query: 666 IL 667 ++ Sbjct: 657 LI 658 >gi|282927567|ref|ZP_06335183.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A10102] gi|282590570|gb|EFB95647.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A10102] Length = 686 Score = 361 bits (927), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 216/636 (33%), Positives = 359/636 (56%), Gaps = 24/636 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DL+ Y P+ + D +++ ++ VTI G + R K+ ++ I Sbjct: 37 DLVLYLPTRYEDNTV-IDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIA 95 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--------DVNFP 154 + + LK + ITV GK ++K I + +F NSQ DV Sbjct: 96 VKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEIT---GNRVFFNSQGTQTQENADVQ-- 150 Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 +E VY + G+ + I +AL+ + + EW+ +L +K ++ N +H+P+ Sbjct: 151 -LEPVYRIKEGIKQKQIRDQIRQALNDVTI-HEWLTDELREKYKLETLDFTLNTLHHPKS 208 Query: 215 AKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 +D AR A+ EL ++ + L R + + I I+ + + + +PF Sbjct: 209 KEDL---LRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDLDQVKSFIDRLPFEL 265 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T++Q+S++ +I +D+ RM R+LQGDVGSGKT+VA I M A AG Q+ +M P IL Sbjct: 266 TEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEIL 325 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QH E + ++ + V ++TG++ R+ LE++ +G +IGTHAL QD + ++ Sbjct: 326 AEQHAESLMALFADS-MNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFH 384 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 + LVI DEQHRFGV QR L +K +VL MTATPIPRTL ++ G++D+S I + P Sbjct: 385 NVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPK 444 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHE 512 GRKPI T + D+V+ ++ L +G++AY ICP IE + + ++VV + SL + Sbjct: 445 GRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQ 504 Query: 513 HF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 ++ S + ++HG++S +K+ VM F N +L++TTV+EVG++V +A+ ++I +A+ F Sbjct: 505 YYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRF 564 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631 GL+ LHQLRGRVGR ++ S C+L+ P ++ R++++ T DGF ++E DL+ R G Sbjct: 565 GLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPG 623 Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 + G+KQSG+P FL+A +LE+AR +A ++ Sbjct: 624 DFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELI 659 >gi|282880443|ref|ZP_06289150.1| ATP-dependent DNA helicase RecG [Prevotella timonensis CRIS 5C-B1] gi|281305546|gb|EFA97599.1| ATP-dependent DNA helicase RecG [Prevotella timonensis CRIS 5C-B1] Length = 700 Score = 361 bits (927), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 233/674 (34%), Positives = 374/674 (55%), Gaps = 33/674 (4%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG K L K + + + DLL Y+P ++DR +I E+ + V + G I Sbjct: 14 GVGPKRKEILEKELQI-----STWGDLLEYYPYKYVDRSRIYRIGELRGDLPFVQLKGKI 68 Query: 77 SQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 F + R + +DGTG + L++F R + + + + V G+ R Sbjct: 69 LSFEEFAMGAHRKRVVAHFSDGTGVVDLVWF-RGAQYVYKTYKVNEEYIVFGRPSIYGGR 127 Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQ 195 HP DV + + P ++ + KK+ + + S + +EK Q Sbjct: 128 YQFAHPD--IDKVTDVQ---LSEMGMQPYYMTTERMKKMGLTSRSLEKLTKTLVEKLFEQ 182 Query: 196 --KKSFP----------SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-L 242 ++ P S EA + IH P+ +D + A+ RL ++EL Q+ +L Sbjct: 183 TISETLPPYIIGPLHLISRTEALHKIHYPKSLEDVQ---RAQVRLKFEELFYVQLNILRY 239 Query: 243 MRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 Q +K G G + N+PF T +Q+ + +I DM+ +M R++QGD Sbjct: 240 AHDQRRKYRGYVFTQVGSLFHFFYHNNLPFELTNAQKRVMHEIRNDMATGQQMNRLVQGD 299 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVAL++M A+ G QA +MAP ILA+QH+ I+K+ + + +E++TG + Sbjct: 300 VGSGKTLVALMSMLIAIGNGFQACMMAPTEILAEQHFATIRKFLRQMPVRIELLTGIVKG 359 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 R + L + G+ I++GTHA+ +D++Q+ +L L +VDEQHRFGV QR KL K+ Sbjct: 360 KKREEILNGLLTGEVQILVGTHAVIEDNVQFSRLGLAVVDEQHRFGVAQRAKLWGKSQQP 419 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 PH+L+MTATPIPRTL +T GD+D+S I E P GRKPI+T+ N++ + + ++ + Sbjct: 420 PHILVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTIHKYDNQLTSLYQGIRQQIR 479 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539 +G++ Y + P I E ++ + +++ + SL F ++ +HG+M +K+ M F Sbjct: 480 QGRQVYIVFPLITESEKIDLKNLEAGYESLCSIFPDMKLSKVHGKMKPKEKDLEMQKFSK 539 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G ++L+ATTVIEVG+DV +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+ + Sbjct: 540 GETQILVATTVIEVGVDVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQSYCILVTNHK 599 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEI 658 L++ + R+ ++ T DGF IAE DLK R G++ G +QSG+ L IA L+++ Sbjct: 600 LTQETRKRIDIMCQTNDGFQIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLIQL 659 Query: 659 ARKDAKHILTQDPD 672 AR +A+ I+ DPD Sbjct: 660 ARDEAQKIINDDPD 673 >gi|295693180|ref|YP_003601790.1| ATP-dependent DNA helicase recg [Lactobacillus crispatus ST1] gi|295031286|emb|CBL50765.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus ST1] Length = 678 Score = 361 bits (927), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 223/686 (32%), Positives = 378/686 (55%), Gaps = 28/686 (4%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 N LFAP++ +GVG K + L G+ DLLFY P + + P + +I + Sbjct: 4 NALFAPVTDLKGVGTKTTAAL------GSLGIYSIYDLLFYFPFRYDELQTLP-LDQIMD 56 Query: 67 ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122 + V + G ++ S F +K R +K+ ++ ++ ++ F+ + LKN G++ Sbjct: 57 GQKVMLKGIVATEAFVSRFGYKKTRLSFKMRIDH---DVIMVNFFNQP-WLKNKIEIGQE 112 Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + + GK + + ++ D P+ + VDL I + + + Sbjct: 113 VAIYGKYNVARQSLTAFK--FVAAKENDSGMAPIYPVNRHVKQKKLVDLINVAIDDFIDQ 170 Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 + ++PE + ++ K I + +H+P+ + + E A+ + E ++ L Sbjct: 171 VQDIVPEKLRQEYRLLKDQVIIEK----MHHPKNSHEAEL---AKRSAIFREFFIFELQL 223 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L+ + K++G + ++ +++PF + Q+ + +I DM +M R+LQG Sbjct: 224 ALLTRNDGKQMGYAKKYDLTEIAQLTKSLPFELSDDQKHVVNEIFADMHSDGQMRRLLQG 283 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA+ A+ AA+ AG QA +M P ILA QH++ I + + + V ++TGN Sbjct: 284 DVGSGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTK 343 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 RR+ + G +++IGTHAL QDS+ + KL LVI+DEQHRFGV QR L K Sbjct: 344 TLERREIYCELTDGTINVVIGTHALIQDSVIFKKLGLVIIDEQHRFGVGQRQALINKGDQ 403 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 P +L MTATPIPRTL LT GD+ +S+I PAGRKPI + +++ EV +++ L+ Sbjct: 404 PDILAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISTWKTSSQMKEVYRQMQEQLN 463 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKN 539 +G + Y + P I E + + ++ E L F + ++HG+M K+ +M +F Sbjct: 464 QGFQIYAVTPLITESETLDLKNAEELHEKLSHDFPDQKVVLLHGQMPGAQKDEIMAAFAA 523 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG S C+ L P Sbjct: 524 GEINILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGRTQSYCVFLADPK 583 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 + + R+ ++ +T DGF +AEEDLK R EG++ G QSG+P+F + + + L +A Sbjct: 584 -TDSGKARMKIIASTNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYNTLVVA 642 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILL 685 +K+A+ ++ DPDL+ ++++ +L Sbjct: 643 QKEARALVAADPDLSDPGHKALKQVL 668 >gi|270290362|ref|ZP_06196587.1| ATP-dependent DNA helicase RecG [Pediococcus acidilactici 7_4] gi|270281143|gb|EFA26976.1| ATP-dependent DNA helicase RecG [Pediococcus acidilactici 7_4] Length = 675 Score = 361 bits (927), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 219/646 (33%), Positives = 367/646 (56%), Gaps = 37/646 (5%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98 DL+ Y+P + D + K E+++++ VT G ++ + F K R +++L+ + + Sbjct: 32 DLITYYPFRYEDLAAK-KPQEVADQQKVTFQGIVATAPTIARFGRHKVRVNFRLLVENSS 90 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 + + FF + +K +++ + GK + + + I Q +EA Sbjct: 91 --VMVTFFNQP--WIKKQLEANQEVAIYGKWDANRQSLTGIK---IITEEQG-----MEA 138 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLP-----VLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213 VY + ++++ AL+ V+PE L++K +H P Sbjct: 139 VYPANKHIRQATIQQLVEAALNEYAEQVQDVIPE----ALIEKYRLMHRLAMIKALHFP- 193 Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 D + T AR ++E L Q+ L +++ + + E G I+ + ++ ++ ++ +PF Sbjct: 194 --GDEQITKQARRTAMFEEFLVFQMGLQVVKSRDRVEKGTKIDYQIQLVREFIQQLPFEL 251 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T +Q+ +IL ++ M R+LQGDVGSGKT+VA IAM A + +G QA +MAP IL Sbjct: 252 TGAQKRVTNEILANLKSAWHMNRLLQGDVGSGKTVVAAIAMYATITSGHQAALMAPTEIL 311 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QH + K+ N + + ++ G M + R + LE + G+ I+IGTHAL QD +++ Sbjct: 312 AEQHANNLIKFFANFDVKIGLLVGGMRKKVRNELLEAVKAGEIDIVIGTHALIQDDVEFK 371 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L L I+DEQHRFGV QR KL QK P +L MTATPIPRTL +T+ GD+D+S I + PA Sbjct: 372 NLGLAIIDEQHRFGVNQRQKLRQKGANPDILAMTATPIPRTLAITAYGDMDVSIIDQLPA 431 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 GRKP+ T + D+V+ ++ +G++A+ + P IEE + + ++ + + L + Sbjct: 432 GRKPVVTKWLKKGEWDKVLALMEHEFKKGRQAFVVAPLIEESEVMDLQNAMTLYEELKDF 491 Query: 514 FTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 F +I I+HG+M +K+ +M FK G L++TTVIEVG+DV +A++++I++A+ F Sbjct: 492 FGQRYAIGILHGKMDGAEKDQIMADFKAGKYAGLVSTTVIEVGVDVPNATLMVIQDADRF 551 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRK 629 GLAQLHQLRGR+GRG++ + C+L+ P KN+ R+ ++ T +GF IAE DLK R Sbjct: 552 GLAQLHQLRGRIGRGQQQAYCLLVADP---KNAVGKQRMQIMVETNNGFRIAEADLKMRG 608 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 +G++ G +QSG+P+F + P + L+ A+ +A I+ Q PD S Sbjct: 609 QGDLFGQQQSGVPEFKVGDPVVDLGALQTAQLEAAKIVNQ-PDWQS 653 >gi|15924217|ref|NP_371751.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus Mu50] gi|15926810|ref|NP_374343.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus N315] gi|148267718|ref|YP_001246661.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus JH9] gi|150393776|ref|YP_001316451.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus JH1] gi|156979548|ref|YP_001441807.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus Mu3] gi|253315585|ref|ZP_04838798.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731844|ref|ZP_04866009.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733535|ref|ZP_04867700.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus TCH130] gi|255006014|ref|ZP_05144615.2| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795717|ref|ZP_05644696.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9781] gi|258415941|ref|ZP_05682211.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9763] gi|258419688|ref|ZP_05682655.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9719] gi|258434860|ref|ZP_05688934.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A9299] gi|258444564|ref|ZP_05692893.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A8115] gi|258447603|ref|ZP_05695747.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A6300] gi|258449445|ref|ZP_05697548.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A6224] gi|258454824|ref|ZP_05702788.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A5937] gi|269202842|ref|YP_003282111.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus ED98] gi|282892713|ref|ZP_06300948.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A8117] gi|295407165|ref|ZP_06816966.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A8819] gi|296275248|ref|ZP_06857755.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus MR1] gi|297245949|ref|ZP_06929808.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A8796] gi|54039024|sp|P64325|RECG_STAAN RecName: Full=ATP-dependent DNA helicase recG gi|54041651|sp|P64324|RECG_STAAM RecName: Full=ATP-dependent DNA helicase recG gi|13701027|dbj|BAB42322.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus N315] gi|14246997|dbj|BAB57389.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus Mu50] gi|147740787|gb|ABQ49085.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus JH9] gi|149946228|gb|ABR52164.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus JH1] gi|156721683|dbj|BAF78100.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus Mu3] gi|253724443|gb|EES93172.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728589|gb|EES97318.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus TCH130] gi|257789689|gb|EEV28029.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9781] gi|257839277|gb|EEV63751.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9763] gi|257844273|gb|EEV68655.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9719] gi|257849221|gb|EEV73203.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A9299] gi|257850057|gb|EEV74010.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A8115] gi|257853794|gb|EEV76753.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A6300] gi|257857433|gb|EEV80331.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A6224] gi|257863207|gb|EEV85971.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A5937] gi|262075132|gb|ACY11105.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus ED98] gi|282764710|gb|EFC04835.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A8117] gi|285816909|gb|ADC37396.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus 04-02981] gi|294968018|gb|EFG44046.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A8819] gi|297177113|gb|EFH36367.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A8796] gi|312829621|emb|CBX34463.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131018|gb|EFT87002.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus CGS03] gi|329727162|gb|EGG63618.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus 21172] Length = 686 Score = 361 bits (927), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 216/636 (33%), Positives = 359/636 (56%), Gaps = 24/636 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DL+ Y P+ + D +++ ++ VTI G + R K+ ++ I Sbjct: 37 DLVLYLPTRYEDNTV-IDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIA 95 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--------DVNFP 154 + + LK + ITV GK ++K I + +F NSQ DV Sbjct: 96 VKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEIT---GNRVFFNSQGTQTQENADVQ-- 150 Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 +E VY + G+ + I +AL+ + + EW+ +L +K ++ N +H+P+ Sbjct: 151 -LEPVYRIKEGIKQKQIRDQIRQALNDVTI-HEWLTDELREKYKLETLDFTLNTLHHPKS 208 Query: 215 AKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 +D AR A+ EL ++ + L R + + I I+ + + + +PF Sbjct: 209 KEDL---LRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDLDQVKSFIDRLPFEL 265 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T++Q+S++ +I +D+ RM R+LQGDVGSGKT+VA I M A AG Q+ +M P IL Sbjct: 266 TEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEIL 325 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QH E + ++ + V ++TG++ R+ LE++ +G +IGTHAL QD + ++ Sbjct: 326 AEQHAESLMALFGDS-MNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFH 384 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 + LVI DEQHRFGV QR L +K +VL MTATPIPRTL ++ G++D+S I + P Sbjct: 385 NVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPK 444 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHE 512 GRKPI T + D+V+ ++ L +G++AY ICP IE + + ++VV + SL + Sbjct: 445 GRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQ 504 Query: 513 HF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 ++ S + ++HG++S +K+ VM F N +L++TTV+EVG++V +A+ ++I +A+ F Sbjct: 505 YYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRF 564 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631 GL+ LHQLRGRVGR ++ S C+L+ P ++ R++++ T DGF ++E DL+ R G Sbjct: 565 GLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPG 623 Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 + G+KQSG+P FL+A +LE+AR +A ++ Sbjct: 624 DFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELI 659 >gi|317475642|ref|ZP_07934903.1| ATP-dependent DNA helicase RecG [Bacteroides eggerthii 1_2_48FAA] gi|316908212|gb|EFV29905.1| ATP-dependent DNA helicase RecG [Bacteroides eggerthii 1_2_48FAA] Length = 698 Score = 361 bits (927), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 235/673 (34%), Positives = 371/673 (55%), Gaps = 33/673 (4%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + + L+K + + F DLL+Y P ++DR I EI + + G I Sbjct: 14 GVGPQRASVLNKELGIFS-----FHDLLYYFPYKYVDRSRIYYIQEIDGTMPYIQLKGEI 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 + ++R +DGTG + L++F + + L + ++ V GK RI Sbjct: 69 LGFETAGEGRQRRLIAHFSDGTGVVDLIWF-QGIKYLIGKYKVHQEYIVFGKPSVFNGRI 127 Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190 + HP + ++ ++ Y+ + +E + + V LPE + Sbjct: 128 NIAHPDIDPASELKLSAMGLQPYYNTTEKMKRSSLNSHAIEKMMKNIVRQLDEPLPETLS 187 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 LL + + EA IH P + A RL ++EL Q+ +L K +++ Sbjct: 188 PALLAEHHLMPLTEALMNIHFPVSP---DVLRKAEYRLKFEELFYVQLNILRYAKDRQRK 244 Query: 251 IGIPINVEGKIAQKI--------LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 G + +K+ RN+PF T +Q+ +K+I +D+ +M R+LQGDV Sbjct: 245 ------YRGYVFEKVGDTFNGFYSRNLPFELTNAQKRVLKEIRRDLGSGRQMNRLLQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVAL++M A++ G QA +MAP ILA QHY+ I++ + VE++TG++ Sbjct: 299 GSGKTLVALMSMLMALDNGYQACMMAPTEILANQHYDTIRELLYGMDVRVELLTGSIKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-AP 421 R L + G I+IGTHA+ +D++ + L LV++DEQHRFGV QR +L K+T P Sbjct: 359 RREAILSGLLTGDVQILIGTHAVIEDTVNFASLGLVVIDEQHRFGVAQRARLWAKSTQPP 418 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 H+L+MTATPIPRTL +T GD+D+S I E P GRKPI T+ + + ++ + E Sbjct: 419 HILVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATIHQFDSHRVSLYRSVRKQIEE 478 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNG 540 G++ Y + P I+E ++ + +++ E F + E F + ++G+M +K++ M F +G Sbjct: 479 GRQVYIVYPLIKESEKIDLKNLEEGFLHICEEFPDCKVCKVYGKMKPAEKDAQMQLFVSG 538 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CIL+ L Sbjct: 539 EAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCILVTGYKL 598 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIA 659 ++++ RL ++ T DGF IAE DLK R G++ G +QSG+ L IA LL+ Sbjct: 599 AEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLLQYV 658 Query: 660 RKDAKHILTQDPD 672 R A+ I+ +DP+ Sbjct: 659 RGVAESIVDKDPN 671 >gi|82750831|ref|YP_416572.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus RF122] gi|82656362|emb|CAI80780.1| ATP-dependent DNA helicase [Staphylococcus aureus RF122] Length = 686 Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 216/636 (33%), Positives = 359/636 (56%), Gaps = 24/636 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DL+ Y P+ + D +++ ++ VTI G + R K+ ++ I Sbjct: 37 DLVLYLPTRYEDNTV-IDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIA 95 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--------DVNFP 154 + + LK + ITV GK ++K I + +F NSQ DV Sbjct: 96 VKCIFFNQPYLKKKIELNQTITVKGKWNRIKQEIT---GNRVFFNSQGTQTQESADVQ-- 150 Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 +E VY + G+ + I +AL+ + + EW+ +L +K ++ N +H+P+ Sbjct: 151 -LEPVYRIKEGIKQKQIRDQIRQALNDVTI-HEWLTDELREKYKLETLDFTLNTLHHPKS 208 Query: 215 AKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 +D AR A+ EL ++ + L R + + I I+ + + + +PF Sbjct: 209 KEDL---LRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDLDQVKSFIDRLPFEL 265 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T++Q+S++ +I +D+ RM R+LQGDVGSGKT+VA I M A AG Q+ +M P IL Sbjct: 266 TEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEIL 325 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QH E + ++ + V ++TG++ R+ LE++ +G +IGTHAL QD + ++ Sbjct: 326 AEQHAESLIALFGDS-MNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFH 384 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 + LVI DEQHRFGV QR L +K +VL MTATPIPRTL ++ G++D+S I + P Sbjct: 385 NVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPK 444 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHE 512 GRKPI T + D+V+ ++ L +G++AY ICP IE + + ++VV + SL + Sbjct: 445 GRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQ 504 Query: 513 HF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 ++ S + ++HG++S +K+ VM F N +L++TTV+EVG++V +A+ ++I +A+ F Sbjct: 505 YYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRF 564 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631 GL+ LHQLRGRVGR ++ S C+L+ P ++ R++++ T DGF ++E DL+ R G Sbjct: 565 GLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPG 623 Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 + G+KQSG+P FL+A +LE+AR +A ++ Sbjct: 624 DFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELI 659 >gi|269218657|ref|ZP_06162511.1| putative ATP-dependent DNA helicase RecG [Actinomyces sp. oral taxon 848 str. F0332] gi|269211768|gb|EEZ78108.1| putative ATP-dependent DNA helicase RecG [Actinomyces sp. oral taxon 848 str. F0332] Length = 706 Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 222/646 (34%), Positives = 342/646 (52%), Gaps = 39/646 (6%) Query: 17 RGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75 R +GK+ + L+K+ E R + DLL + P R ++++ E T+ Sbjct: 20 RALGKRTAAALAKL-------ELRTVGDLLSHAPFRLAHRGELMPLADVREGEAATVIAR 72 Query: 76 ISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEMLK---NVFFEGRKITVTGKIK 130 ++ + RR Y + + DG E+ L FF + L G + +G + Sbjct: 73 VTDSRMRPMNSRRGYILTVRVADGVNELDLTFFGKSPRTLDFHAKRLASGVVASFSGTVS 132 Query: 131 KLKNRIIMVHPHY-IFHNSQDVN-----FPLIEAVYSLPTGLSVDLFKKI--IVEALSRL 182 + + + HP Y + + DV P+ A LP S + K + +++AL+ Sbjct: 133 SYRGGLQLTHPEYELVEDESDVAKIARPIPIYHATDRLP---SWHIRKAVQSVLQALAPS 189 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 V P+ + + L PS EA +H P D EW + AR R+A++E Q AL Sbjct: 190 DV-PDPLPGEYLAAHRLPSKFEAMRALHCPED--DEEWRA-ARLRMAHEEAYVLQAALAQ 245 Query: 243 MRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 + ++ P + +G + + +P+ T Q DI D+++ M R+LQGD Sbjct: 246 RSHRARERATAPFPLADGGLLAQFDAGLPYELTSGQREVSADIAADLAKTTPMRRLLQGD 305 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VAL AM ++ GGQA ++AP +LA QH I+ VE++TG++ Sbjct: 306 VGSGKTVVALRAMLQVLDGGGQAALLAPTEVLAYQHMRTIEALV-GPLAPVELLTGSLTA 364 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 A RR+ L R+A GQA +I+GTHALF D + L L +VDEQHRFGV QR L Sbjct: 365 AQRRRTLARVASGQAGLIVGTHALFSDDVAIPFLGLAVVDEQHRFGVDQRDALAGGGV-- 422 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVV 478 H L+MTATPIPRT+ ++ GD+D+S + E PAGR + T ++P ++ ++ V ERL Sbjct: 423 HTLVMTATPIPRTIAMSVFGDLDVSVLRELPAGRAEVSTTVVPASKEAWVERVWERLGEE 482 Query: 479 LSEGKKAYWICPQIEEKKES-NFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVM 534 + G +AY +CP+IE+ E SV + L E + + +HGRMS +K M Sbjct: 483 VRGGGRAYVVCPRIEDDDEGLPLASVADVSAELREKSALAGIGVGTMHGRMSSDEKAEAM 542 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 +SF +G +L++TTV+EVG+DV +A+ ++I +A+ FGL+QLHQLRGR+GRG C+ Sbjct: 543 ESFASGRAPILVSTTVVEVGVDVPEATAMVILDADRFGLSQLHQLRGRIGRGTAPGVCLA 602 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 + + RL +T DGF +AE DL+ R EG++LG Q+G Sbjct: 603 VTSAEKGSLALRRLEAFASTTDGFALAELDLQLRSEGDVLGAAQAG 648 >gi|304384760|ref|ZP_07367106.1| DNA helicase RecG [Pediococcus acidilactici DSM 20284] gi|304328954|gb|EFL96174.1| DNA helicase RecG [Pediococcus acidilactici DSM 20284] Length = 675 Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 219/646 (33%), Positives = 367/646 (56%), Gaps = 37/646 (5%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS---FQLQKRR-PYKILLNDGT 98 DL+ Y+P + D + K E+++++ VT G ++ + F K R +++L+ + + Sbjct: 32 DLITYYPFRYEDLAAK-KPQEVADQQKVTFQGIVATAPTIVRFGRHKVRVNFRLLVENSS 90 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 + + FF + +K +++ + GK + + + I Q +EA Sbjct: 91 --VMVTFFNQP--WIKKQLEANQEVAIYGKWDANRQSLTGIK---IITEEQG-----MEA 138 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLP-----VLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213 VY + ++++ AL+ V+PE L++K +H P Sbjct: 139 VYPANKHIRQATIQQLVEAALNEYAEQVQDVIPE----ALIEKYRLMHRLAMIKALHFP- 193 Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 D + T AR ++E L Q+ L +++ + + E G I+ + ++ ++ ++ +PF Sbjct: 194 --GDEQITKQARRTAMFEEFLVFQMGLQVVKSRDRVEKGTKIDYQIQLVREFIQQLPFEL 251 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T +Q+ +IL ++ M R+LQGDVGSGKT+VA IAM A + +G QA +MAP IL Sbjct: 252 TGAQKRVTNEILANLKSAWHMNRLLQGDVGSGKTVVAAIAMYATITSGHQAALMAPTEIL 311 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QH + K+ N + + ++ G M + R + LE + G+ I+IGTHAL QD +++ Sbjct: 312 AEQHANNLIKFFANFDVKIGLLVGGMRKKVRNELLEAVKAGEIDIVIGTHALIQDDVEFK 371 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L L I+DEQHRFGV QR KL QK P +L MTATPIPRTL +T+ GD+D+S I + PA Sbjct: 372 NLGLAIIDEQHRFGVNQRQKLRQKGANPDILAMTATPIPRTLAITAYGDMDVSIIDQLPA 431 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 GRKP+ T + D+V+ ++ +G++A+ + P IEE + + ++ + + L + Sbjct: 432 GRKPVVTKWLKKGEWDKVLALMEHEFKKGRQAFVVAPLIEESEVMDLQNAMTLYEELKDF 491 Query: 514 FTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 F +I I+HG+M +K+ +M FK G L++TTVIEVG+DV +A++++I++A+ F Sbjct: 492 FGQRYAIGILHGKMDGAEKDQIMADFKAGKYAGLVSTTVIEVGVDVPNATLMVIQDADRF 551 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRK 629 GLAQLHQLRGR+GRG++ + C+L+ P KN+ R+ ++ T +GF IAE DLK R Sbjct: 552 GLAQLHQLRGRIGRGQQQAYCLLVADP---KNAVGKQRMQIMVETNNGFRIAEADLKMRG 608 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 +G++ G +QSG+P+F + P + L+ A+ +A I+ Q PD S Sbjct: 609 QGDLFGQQQSGVPEFKVGDPVVDLGALQTAQLEAAKIVNQ-PDWQS 653 >gi|298694520|gb|ADI97742.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus ED133] Length = 686 Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 216/636 (33%), Positives = 360/636 (56%), Gaps = 24/636 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DL+ Y P+ + D +++ ++ VTI G + + R K+ ++ I Sbjct: 37 DLVLYLPTRYEDNTV-IDLNQAEDQSNVTIEGQVYRAPVVAFFGRNKSKLTVHLMVNNIA 95 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--------DVNFP 154 + + LK + ITV GK ++K I + +F NSQ DV Sbjct: 96 VKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEIT---GNRVFFNSQGTQTQENADVQ-- 150 Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 +E VY + G+ + I +AL+ + + EW+ +L +K ++ N +H+P+ Sbjct: 151 -LEPVYRIKEGIKQKQIRDQIRQALNDVTI-HEWLTDELREKYKLETLDFTLNTLHHPKS 208 Query: 215 AKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 +D AR A+ EL ++ + L R + + I I+ + + + +PF Sbjct: 209 KEDL---LRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDLDQVKSFIDRLPFEL 265 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T++Q+S++ +I +D+ RM R+LQGDVGSGKT+VA I M A AG Q+ +M P IL Sbjct: 266 TEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEIL 325 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QH E + ++ + V ++TG++ R+ LE++ +G +IGTHAL QD + ++ Sbjct: 326 AEQHAESLIALFGDS-MNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFH 384 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 + LVI DEQHRFGV QR L +K +VL MTATPIPRTL ++ G++D+S I + P Sbjct: 385 NVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPK 444 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHE 512 GRKPI T + D+V+ ++ L +G++AY ICP IE + + ++VV + SL + Sbjct: 445 GRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQ 504 Query: 513 HF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 ++ S + ++HG++S +K+ VM F N +L++TTV+EVG++V +A+ ++I +A+ F Sbjct: 505 YYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRF 564 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631 GL+ LHQLRGRVGR ++ S C+L+ P ++ R++++ T DGF ++E DL+ R G Sbjct: 565 GLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPG 623 Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 + G+KQSG+P FL+A +LE+AR +A ++ Sbjct: 624 DFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELI 659 >gi|33592698|ref|NP_880342.1| ATP-dependent DNA helicase [Bordetella pertussis Tohama I] gi|33572344|emb|CAE41901.1| ATP-dependent DNA helicase [Bordetella pertussis Tohama I] gi|332382113|gb|AEE66960.1| ATP-dependent DNA helicase RecG [Bordetella pertussis CS] Length = 656 Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 227/607 (37%), Positives = 339/607 (55%), Gaps = 24/607 (3%) Query: 87 RRPYKILLNDGTGEITL--LFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI 144 RR +L D TGE+ L L FY + V GR++ G+++ MVHP Sbjct: 42 RRQLTAVLADDTGELQLRWLNFYPSQQKQLTV---GRRLRARGEVRGGLFGREMVHPRM- 97 Query: 145 FHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203 +S D P + VY GL +K I +AL+R L + + ++ ++ A Sbjct: 98 --SSADQPLPASLTPVYPSTDGLPQPTLRKAIGQALARAD-LSDTLPEEARRRYGLAEFA 154 Query: 204 EAFNIIHNP----RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-- 257 A ++H P + + E PA R+ +DELLA Q++L R + + P+ Sbjct: 155 PAVRLLHAPPPDAAEHELMERIHPAWRRIKFDELLAQQLSLAAARAARRVKRAEPLPASQ 214 Query: 258 -EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316 E + ++ +PF+ T +Q+ + +I D++Q M R+LQGDVGSGKT+VA IA A Sbjct: 215 DEDGLVARLYEALPFALTGAQQRVVAEIAADLAQPYPMHRLLQGDVGSGKTVVAAIAAAQ 274 Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376 A+ Q +MAP ILA+QH+ + + + + V ++G++ RR+A +A G Sbjct: 275 AIACEAQVALMAPTEILAEQHFRKLVGWLEPLGVAVAWLSGSLSAKARREAAAAVADGSV 334 Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------PHVLLMTATP 430 +++GT AL QD + + +L L IVDEQHRFGV QRL L++K PH L M+ATP Sbjct: 335 QLVVGTQALIQDHVMFQRLGLSIVDEQHRFGVGQRLALSRKGETGRGVIVPHQLNMSATP 394 Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490 IPRTL +T D+D+S I E P GR P+ T ++ R +EVI + +G++AYW+CP Sbjct: 395 IPRTLAMTFFADLDVSVIDELPPGRTPVVTKLVADARREEVIGHIAHAARQGRQAYWVCP 454 Query: 491 QIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549 +EE + ++ V+ ++ I ++HGR+ +K VM +F+ G LL+ATT Sbjct: 455 LVEESEALELQTAVDTHEAMRAALPDLRIGLVHGRLPQAEKAEVMRAFREGEIDLLVATT 514 Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609 VIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+LLY PLS+ + RL Sbjct: 515 VIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESICVLLYQAPLSQVARQRLR 574 Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669 + T DGF IA DL+QR GE LG +QSG+ A E ++ E AR+ A + + Sbjct: 575 AMFETSDGFEIARRDLEQRGPGEFLGTRQSGLALLRFADLEADVAIAEQAREAAVWLRAK 634 Query: 670 DPDLTSV 676 P+ + Sbjct: 635 HPEAVAA 641 >gi|229496953|ref|ZP_04390658.1| ATP-dependent DNA helicase RecG [Porphyromonas endodontalis ATCC 35406] gi|229316055|gb|EEN81983.1| ATP-dependent DNA helicase RecG [Porphyromonas endodontalis ATCC 35406] Length = 699 Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 232/665 (34%), Positives = 366/665 (55%), Gaps = 21/665 (3%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI-VTITGYI 76 GVG++ S L + F DLL+ P ++DR + E+ + V + G I Sbjct: 15 GVGERKSKLLQSELGVYT-----FRDLLYTFPFRYVDRSRILTVRELRDGGGEVQLRGII 69 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 S + ++ K D TG I L++F + ++ + F GR+ V G+ K + Sbjct: 70 SDYVLEGFGRKTRLKATFRDDTGSIELVWF-KGSDYISEQFPTGREYIVYGRPKAFGHYY 128 Query: 137 IMVHPHYI-FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP-----EWIE 190 +VHP + V L+ ++ L K + A+ RL + E + Sbjct: 129 NIVHPEVTPIERASQVAGGLLSVYHTSEKMKRSGLDSKNLRNAIGRLCQIAHLYIRETLP 188 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 +++ + + +A IH P+ E A +RL +DEL Q++L L +K+ K Sbjct: 189 EEVRNRWGLIPLPQALYAIHFPKDDATLE---KAVQRLKFDELFFLQLSLQLTKKERKSH 245 Query: 251 I-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309 G + G+ ++P+ T++Q+ +++I D +M R+LQGDVG GKTLV Sbjct: 246 FKGYLFDQVGEYFNSYYSSLPYDLTQAQKRVLREIRHDTQSGLQMNRLLQGDVGCGKTLV 305 Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369 A+ +M A++ G QA +MAP ILAQQHYE ++ I V ++TG+ PQ R LE Sbjct: 306 AVFSMLLALDNGWQACMMAPTEILAQQHYETLRGQLAPLGIEVALLTGSTPQRERTTILE 365 Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMT 427 +A G +++GTHAL ++ +Q+ L L ++DEQHRFGV QR +L +K+ PHVL+M+ Sbjct: 366 DLAQGSLRLLVGTHALLEERVQFAHLALAVIDEQHRFGVVQRARLWEKSLDLLPHVLIMS 425 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T GD+DIS I E P GRKPI T + +EV ++ L G++ Y Sbjct: 426 ATPIPRTLAMTLYGDLDISVIDELPPGRKPISTRHYFDDFSEEVFRLVEQELFAGRQIYV 485 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 + P IE ++S+++++ + F ++ +HG++ +K+ M+ F +G +L+ Sbjct: 486 VYPMIEGTEDSDYKNLETGYEQYRYRFGDRNVTWVHGKLKPQEKQQRMEQFVSGKIPILL 545 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 +TTVIEVG++V +AS+++IENA+ FGLAQLHQLRGRVGRG E S C+LL +S + Sbjct: 546 STTVIEVGVNVPNASVMVIENADRFGLAQLHQLRGRVGRGAEQSYCLLLSKRTISPVAIK 605 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKH 665 R+ + ++ DGF IAEEDLK R G+I G +QSG + +A+P ++L A + K Sbjct: 606 RIEAMCSSNDGFFIAEEDLKLRGAGDIEGTRQSGDLSGLRLAEPSKDLNILYAAAQTVKE 665 Query: 666 ILTQD 670 IL +D Sbjct: 666 ILERD 670 >gi|297622549|ref|YP_003703983.1| ATP-dependent DNA helicase RecG [Truepera radiovictrix DSM 17093] gi|297163729|gb|ADI13440.1| ATP-dependent DNA helicase RecG [Truepera radiovictrix DSM 17093] Length = 762 Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 230/650 (35%), Positives = 367/650 (56%), Gaps = 18/650 (2%) Query: 41 FIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY-KILLNDG-T 98 + DLLFY+P + DR P + E+ T+ G I+ + + + + L D Sbjct: 107 YRDLLFYYPKRYEDRRALPHFGALREQESATVVGTITGRKATKSRSGMVVTRAFLEDAHG 166 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIE 157 G +T ++F + L+ F G+++ VTGK+K+ + + H+ I +S+ ++ I Sbjct: 167 GRLTAVWFNQP--WLEKSLFPGQRVIVTGKVKRRGRLVELSVAHFEIDDDSESLSAGRIV 224 Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 VY+ GLS ++ + L L V+P+ + + ++++ + A +H P Sbjct: 225 GVYAATQGLSQAYVRRAVHRLLGALGVIPDHLPRSVVERFGLLPLDAALREVHFPTSE-- 282 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 E + A RL +DE L ++ +LL R +G V+ ++ ++PF+ T +Q Sbjct: 283 -EGLAAALRRLKFDEFLFLELRVLLNRD--TTLLGKRFTVKRSDLERFAASLPFALTGAQ 339 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + +IL DM+ +M R+LQGDVGSGKT VA A+ AV+ G QA +MAP ILA+QH Sbjct: 340 RRVLDEILGDMAAPKQMARLLQGDVGSGKTAVAAAAIYVAVQNGYQAALMAPTEILARQH 399 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y + +Y + ++ G+ RR+A ER++ Q + +GTHAL Q+ + + L L Sbjct: 400 YLNLIQYLYPLGVECDLFIGSAGSRERREARERLSASQTDLAVGTHALIQEGVTFRNLGL 459 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 ++DE+HRFGV+QR +L + P VL+M+ATPIPR+L LT GD+++S I E P GRK Sbjct: 460 AVIDEEHRFGVEQRRRLL--SGNPDVLVMSATPIPRSLALTYYGDLELSVIDELPPGRKG 517 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE---SNFRSVVERFNSLHEHF 514 ++T ++ R +V + +G++ Y + P IEE + S S + F L Sbjct: 518 VQTRLVSDARRRDVYRFAWSEIKKGRQVYLVTPLIEESEAEVMSEIVSATKMFEDLQALM 577 Query: 515 TSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 + + ++HG+M+ +K+ VM+ F+ LL++TTVIEVG+D+ +AS++IIENAE FG Sbjct: 578 PEACRLGLLHGKMTGPEKDEVMERFRRHEFDLLVSTTVIEVGVDIPNASVMIIENAERFG 637 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 L+QLHQLRGRVGRGE S CIL+ SK + RLSV++ DGF+IAE+DL+ R GE Sbjct: 638 LSQLHQLRGRVGRGEHESFCILVAG-DRSKRTQHRLSVIEKHTDGFVIAEKDLELRGPGE 696 Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682 + G +QSGMP ++ L+E +R+ AK +L DP L + +R Sbjct: 697 LKGTRQSGMPDLVLGDLSKDTELIERSRELAKKMLAADPKLEAPWATRLR 746 >gi|313679752|ref|YP_004057491.1| ATP-dependent DNA helicase recg [Oceanithermus profundus DSM 14977] gi|313152467|gb|ADR36318.1| ATP-dependent DNA helicase RecG [Oceanithermus profundus DSM 14977] Length = 776 Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 226/653 (34%), Positives = 355/653 (54%), Gaps = 18/653 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRR---PYKILLNDGTG 99 DLLFY+P DR P + ++ T+ + S + +++ L +D Sbjct: 123 DLLFYYPRRHEDRRTLPGFAALAPGAKATVVATVLSKSQVKTPRKKMLITQARLADDRGH 182 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI-FHNSQDVNFPLIEA 158 ++T ++F + M EG KI VTG+ ++ R+ + Y + ++ I Sbjct: 183 KLTAVWFNQPWVM--GQLREGEKIVVTGRYT-VRGRVRNLAVEYFEAEGGEQLSTGRIVP 239 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 VYSL +S ++ + AL + +P+ + ++L Q+ + A IH P + Sbjct: 240 VYSLGERMSQAWLRRSVWRALEAIKEVPDPLPEELRQELGLADLDFALRQIHFPESEQHL 299 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 + A ERL +DE L ++ +LL +G V + L +PF PT +Q Sbjct: 300 ---ARALERLKFDEFLFLELRVLLT-SGASALVGQIFEVREEDLCTFLDALPFEPTAAQR 355 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +IL DM + +M R+LQGDVGSGKT VA A+ A Q +MAP ILA+QH+ Sbjct: 356 RVLDEILADMRSERQMARLLQGDVGSGKTAVAAAALYVAARNQKQGALMAPTEILAKQHF 415 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + +Y + VE++TG+M +++ RI G+ +++GTHAL Q +++ +L L Sbjct: 416 ANLTRYLWPLGVRVELLTGSMKAGEKKRVYARIESGEVDVVVGTHALIQKEVRFRELGLA 475 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 ++DE+HRFGV QR L Q P VL+MTATPIPR+L LT GD+++S I E P GRKP+ Sbjct: 476 VIDEEHRFGVMQRRALLQ--GRPDVLVMTATPIPRSLALTLYGDLEVSVIDEMPPGRKPV 533 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE---SNFRSVVERFNSLHEHFT 515 KT ++ + + ++ EG + + + P IEE + R+ E + Sbjct: 534 KTRLLTQRSRKDAYAFARKLIGEGHQVFVVAPLIEESDAEVMAEVRAATELAGEVAAMLP 593 Query: 516 SS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + + ++HGRM +K+++M+ F+N +L++TTVIEVG+D+ A+++IIENAE FGLA Sbjct: 594 EARVEVLHGRMKAEEKDALMERFRNRDFDVLVSTTVIEVGVDIPGANLMIIENAERFGLA 653 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG E + CIL+ S+ + RL V++ + DGF +AE+DLK R GE+ Sbjct: 654 QLHQLRGRVGRGGEQAYCILIAG-DTSRKTMQRLRVIEKSTDGFYVAEQDLKLRGPGELR 712 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687 G +QSG+P + ++E AR AK IL DP LT Q+++ L L Sbjct: 713 GTRQSGLPDLQLGDLTSDVEIIESARSTAKRILEADPYLTEPEHQALKRELQL 765 >gi|57651795|ref|YP_186101.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus COL] gi|87161257|ref|YP_493817.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194933|ref|YP_499733.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221349|ref|YP_001332171.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus str. Newman] gi|258452524|ref|ZP_05700530.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A5948] gi|262048125|ref|ZP_06021012.1| ATP-dependent DNA helicase [Staphylococcus aureus D30] gi|282920009|ref|ZP_06327738.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9765] gi|284024151|ref|ZP_06378549.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus 132] gi|294848220|ref|ZP_06788967.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9754] gi|304381210|ref|ZP_07363863.1| DNA helicase RecG [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|3914612|sp|O50581|RECG_STAA8 RecName: Full=ATP-dependent DNA helicase recG gi|81694656|sp|Q5HGK6|RECG_STAAC RecName: Full=ATP-dependent DNA helicase recG gi|2826896|dbj|BAA24572.1| RecG [Staphylococcus aureus] gi|57285981|gb|AAW38075.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus COL] gi|87127231|gb|ABD21745.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202491|gb|ABD30301.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374149|dbj|BAF67409.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus str. Newman] gi|257859742|gb|EEV82584.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A5948] gi|259163691|gb|EEW48246.1| ATP-dependent DNA helicase [Staphylococcus aureus D30] gi|269940719|emb|CBI49100.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus TW20] gi|282594725|gb|EFB99709.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9765] gi|294825020|gb|EFG41442.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9754] gi|304340193|gb|EFM06134.1| DNA helicase RecG [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198464|gb|EFU28793.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus CGS01] gi|320140958|gb|EFW32805.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus MRSA131] gi|320144327|gb|EFW36093.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus MRSA177] gi|329313896|gb|AEB88309.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp. aureus T0131] gi|329724736|gb|EGG61241.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus 21189] gi|329728777|gb|EGG65198.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus 21193] Length = 686 Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 216/636 (33%), Positives = 359/636 (56%), Gaps = 24/636 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DL+ Y P+ + D +++ ++ VTI G + R K+ ++ I Sbjct: 37 DLVLYLPTRYEDNTV-IDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIA 95 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--------DVNFP 154 + + LK + ITV GK ++K I + +F NSQ DV Sbjct: 96 VKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEIT---GNRVFFNSQGTQTQENADVQ-- 150 Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 +E VY + G+ + I +AL+ + + EW+ +L +K ++ N +H+P+ Sbjct: 151 -LEPVYRIKEGIKQKQIRDQIRQALNDVTI-HEWLTDELREKYKLETLDFTLNTLHHPKS 208 Query: 215 AKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 +D AR A+ EL ++ + L R + + I I+ + + + +PF Sbjct: 209 KEDL---LRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDIDQVKSFIDRLPFEL 265 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T++Q+S++ +I +D+ RM R+LQGDVGSGKT+VA I M A AG Q+ +M P IL Sbjct: 266 TEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEIL 325 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QH E + ++ + V ++TG++ R+ LE++ +G +IGTHAL QD + ++ Sbjct: 326 AEQHAESLMALFGDS-MNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFH 384 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 + LVI DEQHRFGV QR L +K +VL MTATPIPRTL ++ G++D+S I + P Sbjct: 385 NVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPK 444 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHE 512 GRKPI T + D+V+ ++ L +G++AY ICP IE + + ++VV + SL + Sbjct: 445 GRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQ 504 Query: 513 HF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 ++ S + ++HG++S +K+ VM F N +L++TTV+EVG++V +A+ ++I +A+ F Sbjct: 505 YYGVSRVGLLHGKLSADEKDEVMQKFSNHEINVLVSTTVVEVGVNVPNATFMMIYDADRF 564 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631 GL+ LHQLRGRVGR ++ S C+L+ P ++ R++++ T DGF ++E DL+ R G Sbjct: 565 GLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPG 623 Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 + G+KQSG+P FL+A +LE+AR +A ++ Sbjct: 624 DFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELI 659 >gi|296270745|ref|YP_003653377.1| ATP-dependent DNA helicase RecG [Thermobispora bispora DSM 43833] gi|296093532|gb|ADG89484.1| ATP-dependent DNA helicase RecG [Thermobispora bispora DSM 43833] Length = 725 Score = 360 bits (925), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 232/676 (34%), Positives = 367/676 (54%), Gaps = 49/676 (7%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP--YKILLNDGTGE 100 +LL ++P + R I+ + VT+ G +S ++ RR +++ DGT + Sbjct: 33 ELLRHYPRRYAQRGELTPIASLRHGEHVTVVGRVSSVMRRPMKNRRGTWLDVVVTDGTDK 92 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN----RIIMVHPHY-IFHNSQDVNFPL 155 + L FF + + G + GK+ R+ + HP Y +F S + Sbjct: 93 LHLAFFGKGGHAAEQRLTPGTEAMFAGKVDVFTTPRTRRVTLTHPEYELFDESGETAEEF 152 Query: 156 IEA---VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 A +Y GL+ ++ + L L V + + ++ ++ ++ EA IH P Sbjct: 153 AAAPVPIYPSAQGLASWKIRRAVRTVLDVLSV-DDPLPAEVRGRQGLVTLEEALRRIHRP 211 Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPF 271 D +PAR RLA+DE Q+ALL R + P +G + + + +PF Sbjct: 212 ASQADI---APARRRLAFDEAFLLQLALLKRRMTASEWAAKPRPPRDGGLLSEFDKRLPF 268 Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331 T+ Q ++I D+++ + M R+LQG+VG+GKT+VAL AM V+AGGQA ++AP Sbjct: 269 ELTEGQRKVGEEIAADLARPHPMHRLLQGEVGAGKTVVALRAMLQVVDAGGQAALLAPTE 328 Query: 332 ILAQQHYEFIKKYTQN---------TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 +LAQQH+ I + T ++ ++TG+M A RR AL A GQA I+IGT Sbjct: 329 VLAQQHHRSITNLLGDLATGGVFGGTSVV--LLTGSMGAAARRNALLAAASGQAGIVIGT 386 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQR--LKLTQKATAPHVLLMTATPIPRTLVLTSL 440 HAL Q+ +Q+ L LV+VDEQHRFGV+QR L++ + PHVL+MTATPIPRT+ +T Sbjct: 387 HALLQEQVQFADLGLVVVDEQHRFGVEQRDALRMKAREGRPHVLVMTATPIPRTVAMTVF 446 Query: 441 GDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQI---- 492 GD+++S + + P+GR PI T ++P ++ ER++ ++ G++AY +CP+I Sbjct: 447 GDLEVSTLAQLPSGRAPIATHVVPAAEKPHYLERAWERIREEVALGRQAYVVCPRIGDQE 506 Query: 493 ----------EEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNG 540 E+++ +V++ L E I +HG + +K++VM +F G Sbjct: 507 GGAEEEQATGEDEERRPPLAVLDVARMLGEGPLRDLRIGTLHGALPPEEKDAVMRAFSRG 566 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L+ATTVIEVG+DV +AS+++I +A+ FG++QLHQLRGRVGRG C+L+ P Sbjct: 567 EIDVLVATTVIEVGVDVPNASVMVIMDADRFGVSQLHQLRGRVGRGRLPGLCLLVTEAPA 626 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIA 659 + RL + T DGF ++ DL+QR+EG+ILG QSG L L D L+E A Sbjct: 627 GTPARRRLDAVAATLDGFELSRVDLEQRREGDILGAAQSGRKSSLKLLQLLRDEDLIETA 686 Query: 660 RKDAKHILTQDPDLTS 675 R +A +L++DP+L Sbjct: 687 RAEAAELLSRDPELAG 702 >gi|212639602|ref|YP_002316122.1| ATP-dependent DNA helicase RecG [Anoxybacillus flavithermus WK1] gi|212561082|gb|ACJ34137.1| RecG-like helicase [Anoxybacillus flavithermus WK1] Length = 682 Score = 360 bits (925), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 223/631 (35%), Positives = 354/631 (56%), Gaps = 17/631 (2%) Query: 44 LLFYHPSSFIDRHYR-PKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 LL++ P + D YR + E + +TI G + R+ ++ Sbjct: 34 LLYHFPFRYED--YRICALEEAKHDEKITIIGKVYSEPVLTYYSRKKSRLTFRVLVDRFL 91 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162 + LK +T+TGK K + I + H Q IE VYS Sbjct: 92 VTAVCFNQPYLKKKLILHETVTITGKWDKHRQTITVQQLHIGEMKRQKE----IEPVYST 147 Query: 163 PTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221 L+V ++ I AL + + + + +LLQ S +A IH P E Sbjct: 148 RGDLTVKGMRRFIALALQQYGDAIVDPLPSELLQTYRLISKRDAIRAIHMPLS---HEQL 204 Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESA 280 AR RL Y+E L Q+ + ++K +++ GI Q ++++PF T +Q+ Sbjct: 205 KQARRRLVYEEFLLFQLKMQALKKYRREQSPGIAHRFSDGQLQSFIQSLPFPLTNAQQRV 264 Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340 +++I+QD+ RM R+LQGDVGSGKT+VA +A+ A +G Q +M P ILA+QH E Sbjct: 265 VREIVQDLKSPYRMNRLLQGDVGSGKTVVAAVALYAVYLSGYQGALMVPTEILAEQHAES 324 Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400 + I VE++T ++ R++ LE++A G H+++GTHAL QD + + KL +VI Sbjct: 325 LCTLLAPMGIRVELLTSSVKGKRRKQLLEQLALGDVHVVVGTHALIQDDVNFAKLGVVIT 384 Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460 DEQHRFGV+QR L +K +P VL MTATPIPRTL +T+ G++D+S I E P GRK I+T Sbjct: 385 DEQHRFGVEQRRILREKGQSPDVLFMTATPIPRTLAITAFGEMDVSIIDEMPKGRKKIET 444 Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SI 518 + + ++ V + + + G +AY ICP IEE ++ + ++ ++ L ++ I Sbjct: 445 YWVKHDMLERVFQFMAKQVDAGHQAYVICPLIEESEKLDVQNAIDVHAMLTHYYKGRYRI 504 Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578 ++HGR+S +KE VM +F +L++TTV+EVG++V +A++++I +A+ FGL+QLHQ Sbjct: 505 GLMHGRLSSEEKEEVMRAFSANDIHILVSTTVVEVGVNVPNATVMVIYDADRFGLSQLHQ 564 Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638 LRGRVGRG+ S CIL+ P S+ R+ ++ T DGF+++E+DL+ R G+ G KQ Sbjct: 565 LRGRVGRGQAQSYCILVADPK-SEAGKERMRIMTETNDGFVLSEKDLELRGPGDFFGTKQ 623 Query: 639 SGMPKFLIAQPELHD-SLLEIARKDAKHILT 668 SGMP+F + +HD +LE+AR+DA+ ++ Sbjct: 624 SGMPEFRLGDL-VHDYRILEVARQDAERLIA 653 >gi|161509398|ref|YP_001575057.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|160368207|gb|ABX29178.1| DNA helicase RecG [Staphylococcus aureus subsp. aureus USA300_TCH1516] Length = 686 Score = 360 bits (925), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 216/636 (33%), Positives = 359/636 (56%), Gaps = 24/636 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DL+ Y P+ + D +++ ++ VTI G + R K+ ++ I Sbjct: 37 DLVLYLPTRYEDNTV-IDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIA 95 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--------DVNFP 154 + + LK + ITV GK ++K I + +F NSQ DV Sbjct: 96 VKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEIT---GNRVFFNSQGTQTQENADVQ-- 150 Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 +E VY + G+ + I +AL+ + + EW+ +L +K ++ N +H+P+ Sbjct: 151 -LEPVYRIKEGIKQKQIRDQIRQALNDVTI-HEWLTDELREKYKLETLDFTLNTLHHPKS 208 Query: 215 AKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 +D AR A+ EL ++ + L R + + I I+ + + + +PF Sbjct: 209 KEDL---LRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDIDQVKSFIDRLPFEL 265 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T++Q+S++ +I +D+ RM R+LQGDVGSGKT+VA I M A AG Q+ +M P IL Sbjct: 266 TEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEIL 325 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QH E + ++ + V ++TG++ R+ LE++ +G +IGTHAL QD + ++ Sbjct: 326 AEQHAESLMALFGDS-MNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFH 384 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 + LVI DEQHRFGV QR L +K +VL MTATPIPRTL ++ G++D+S I + P Sbjct: 385 NVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPK 444 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHE 512 GRKPI T + D+V+ ++ L +G++AY ICP IE + + ++VV + SL + Sbjct: 445 GRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQ 504 Query: 513 HF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 ++ S + ++HG++S +K+ VM F N +L++TTV+EVG++V +A+ ++I +A+ F Sbjct: 505 YYGVSRVGLLHGKLSADEKDEVMQKFSNHEINVLVSTTVVEVGVNVPNATFMMIYDADRF 564 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631 GL+ LHQLRGRVGR ++ S C+L+ P ++ R++++ T DGF ++E DL+ R G Sbjct: 565 GLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPG 623 Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 + G+KQSG+P FL+A +LE+AR +A ++ Sbjct: 624 DFFGVKQSGLPDFLVANLVEGYRMLEVARDEAAELI 659 >gi|302542239|ref|ZP_07294581.1| ATP-dependent DNA helicase RecG [Streptomyces hygroscopicus ATCC 53653] gi|302459857|gb|EFL22950.1| ATP-dependent DNA helicase RecG [Streptomyces himastatinicus ATCC 53653] Length = 737 Score = 360 bits (925), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 221/686 (32%), Positives = 363/686 (52%), Gaps = 58/686 (8%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYK--ILLNDGTGE 100 DLL ++P + +R +++++ + VT+ ++ + R + + + DG+G Sbjct: 34 DLLHHYPRRYAERGELTRLADLPLDEHVTVVAQVADARVHKFNSGRGQRLEVTITDGSGR 93 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-------------IFHN 147 + L+FF + + G + GK+ ++ + HP + F N Sbjct: 94 LQLVFFGKGVHKPRAELLPGSRAMFAGKVSVFNHKRQLAHPEFKLLRADSGSDAVEAFAN 153 Query: 148 SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFN 207 +P + + S +VD + + L L + + + L + + ++ A Sbjct: 154 QLLPLYPACKQMESWQIQQAVDTVLGPAGQEDTVLAGLIDPLPESLREGRGLATLPGALR 213 Query: 208 IIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKIL 266 IH PR D + AR+RL +DE Q+AL R+ P V+G + Sbjct: 214 RIHRPRTKADI---ADARDRLKWDEAFVLQVALARRRQADATAPAAPRRPVDGGLLDAFD 270 Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 +PF+ T Q+ +I D++ + M R+LQG+VGSGKT+VAL AM V+AGGQA + Sbjct: 271 ARLPFTLTDGQKRVSAEIFADLATDHPMHRLLQGEVGSGKTMVALRAMLGVVDAGGQAAM 330 Query: 327 MAPIGILAQQHYEFIKKYT-------------QNTQIIVEIITGNMPQAHRRKALERIAH 373 +AP +LAQQH+ I + Q T+++ ++TG+M A RR+AL + Sbjct: 331 LAPTEVLAQQHHRSITEMMGELAEGGMLGGAEQGTKVV--LLTGSMGAAARRQALLDLVT 388 Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIP 432 G+A I+IGTHAL +D +Q++ L LV+VDEQHRFGV+QR L K PH+L+MTATPIP Sbjct: 389 GEAGIVIGTHALIEDKVQFHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVMTATPIP 448 Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWI 488 RT+ +T GD++ S + + PAGR PI + ++P + ER++ ++ G +AY + Sbjct: 449 RTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAKDKPHFLARTWERVREEVAGGHQAYVV 508 Query: 489 CPQI----EEKKESNFRSVVERFN--------SLHEHFTSS------IAIIHGRMSDIDK 530 CP+I +E K + +S + + + + + ++HGRM+ K Sbjct: 509 CPRIGDDEDEAKAAKEKSAEDEAEKRPPLAVLDVADKLAAGPLRDLRVEVLHGRMAPEAK 568 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 + VM F G +L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQLRGRVGRG Sbjct: 569 DEVMRRFAAGGVDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPG 628 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 C+L+ P + + RL + T DGF ++ DL+QR+EG++LG QSG+ L Sbjct: 629 LCLLVTEMPEASPARGRLGAVAATLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRVLAV 688 Query: 651 LHD-SLLEIARKDAKHILTQDPDLTS 675 + D ++ AR++A I+T DP+LT Sbjct: 689 IDDEEVIAAAREEATAIVTADPELTG 714 >gi|167837799|ref|ZP_02464682.1| ATP-dependent DNA helicase RecG [Burkholderia thailandensis MSMB43] Length = 447 Score = 360 bits (925), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 189/425 (44%), Positives = 271/425 (63%), Gaps = 10/425 (2%) Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320 ++ ++ +PF+ T +QE + +I D++Q + M R+LQGDVGSGKT+VA +A A A++A Sbjct: 7 LSARLYAALPFTLTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDA 66 Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380 G QA +MAP ILA+QH ++ + + + V + G++ +R ALE A G A ++I Sbjct: 67 GYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKTKDKRAALEAAALGTAQLVI 126 Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPI 431 GTHA+ QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPI Sbjct: 127 GTHAMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPI 186 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491 PRTL +T D+D+S I E P GR PI T ++ R DEVI R++ G++ YW+CP Sbjct: 187 PRTLAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPL 246 Query: 492 IEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550 IEE + ++ VE + +L + ++HGR++ +K +VMD+F +LL+ATTV Sbjct: 247 IEESETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTV 306 Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610 IEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+L+Y PLS RL Sbjct: 307 IEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKT 366 Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670 ++ T DGF IA DL+ R GE LG +QSG A E L+E AR A ++ + Sbjct: 367 MRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIARH 426 Query: 671 PDLTS 675 PD+ + Sbjct: 427 PDIVA 431 >gi|21223922|ref|NP_629701.1| ATP-dependent DNA helicase RecG [Streptomyces coelicolor A3(2)] gi|256784979|ref|ZP_05523410.1| ATP-dependent DNA helicase RecG [Streptomyces lividans TK24] gi|289768871|ref|ZP_06528249.1| ATP-dependent DNA helicase RecG [Streptomyces lividans TK24] gi|4007725|emb|CAA22409.1| putative ATP-dependent DNA helicase [Streptomyces coelicolor A3(2)] gi|289699070|gb|EFD66499.1| ATP-dependent DNA helicase RecG [Streptomyces lividans TK24] Length = 742 Score = 360 bits (925), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 234/715 (32%), Positives = 371/715 (51%), Gaps = 63/715 (8%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ-------HSSFQLQKRRPYKILLN 95 DLL ++P + +R ++++ + VT+ ++ S K + ++ + Sbjct: 34 DLLHHYPRRYEERGQLTHLADLPMDEHVTVVAQVADARLHTFASSKAPRGKGQRLEVTIT 93 Query: 96 DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL 155 DG+G + L+FF G + GK+ R+ + HP Y D Sbjct: 94 DGSGRLQLVFFGNGVHKPHKELLPGTRAMFAGKVSVFNRRLQLAHPAYELLRGGDDEGEA 153 Query: 156 IEAVYSLPTGL------SVDLFKKIIVEAL-SRLPVLPEWIE---KDLLQKKSFPSIAEA 205 E+V S L + L + +A+ + LP E ++ L + + S+ EA Sbjct: 154 AESVESWAGALIPLYPATAKLESWKLAKAIQTVLPSAQEAVDPLPGSLREGRGLVSLPEA 213 Query: 206 FNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP--INVEGKIAQ 263 IH P D E AR RL +DE Q+AL R + +P +G + Sbjct: 214 LLKIHRPHTKADIE---DARARLKWDEAFVLQVALARRRHAESQLPAVPRKPGADGLLTA 270 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 R +PF+ T Q ++I D++ + M R+LQG+VGSGKTLVAL AM A V++GGQ Sbjct: 271 FDDR-LPFTLTDGQRKVSREIFDDLATDHPMHRLLQGEVGSGKTLVALRAMLAVVDSGGQ 329 Query: 324 AVIMAPIGILAQQHY----EFIKKYTQNTQI-------IVEIITGNMPQAHRRKALERIA 372 AV++AP +LAQQH+ E + + + + V ++TG+M A RR AL +A Sbjct: 330 AVMLAPTEVLAQQHHRSVVEMMGELAEGGMLGGAEHATKVVLLTGSMGAAARRHALLDLA 389 Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPI 431 G+A I+IGTHAL +D +Q++ L LV+VDEQHRFGV+QR L K PH+L+MTATPI Sbjct: 390 TGEAGIVIGTHALIEDKVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPI 449 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYW 487 PRT+ +T GD++ S + + PAGR PI + ++P + ER++ +S G +AY Sbjct: 450 PRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAADKPHFLARAWERVREEVSNGHQAYV 509 Query: 488 ICPQIEEKKESNFRSVVERFN---------------SLHEHFTS------SIAIIHGRMS 526 +CP+I ++ + + + + E + ++HGRM Sbjct: 510 VCPRIGDEDDDPGKGAKQSKQPPEGDADKRPPLAVLDVAEQLARGPLQGLGVEVLHGRMQ 569 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 DK++VM F G +L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQLRGRVGRG Sbjct: 570 PDDKDAVMRRFAAGETDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRG 629 Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646 C+L+ P + + RL+ + +T DGF ++ DL+QR+EG++LG QSG L Sbjct: 630 SAPGLCLLVSEMPEASAARQRLNAVASTRDGFELSRIDLEQRREGDVLGQAQSGARTSLR 689 Query: 647 AQPELHD-SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 + D ++ AR++A ++ DP+LT + G +R L E Q++ G Sbjct: 690 VLAVIEDEEIIAEARQEAAAVVAADPELTGLPG--LRTALEALLDEEREQYLEKG 742 >gi|33597517|ref|NP_885160.1| ATP-dependent DNA helicase [Bordetella parapertussis 12822] gi|33573945|emb|CAE38263.1| ATP-dependent DNA helicase [Bordetella parapertussis] Length = 663 Score = 360 bits (925), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 233/651 (35%), Positives = 354/651 (54%), Gaps = 25/651 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 D + + P + D +S + + G I + S + RR +L D +GE+ Sbjct: 6 DFVLHLPLRYEDETRVTPVSSLRPGFAAQVEGEILR-SEVLYRPRRQLTAVLADDSGELQ 64 Query: 103 L--LFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAV 159 L L FY + V GR++ G+++ MVHP +S D P + V Sbjct: 65 LRWLNFYPSQQKQLTV---GRRLRARGEVRGGLFGREMVHPRM---SSADQPLPASLTPV 118 Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP----RKA 215 Y GL +K I +AL+R L + + ++ ++ A A ++H P + Sbjct: 119 YPSTDGLPQPTLRKAIGQALARAD-LSDTLPEEARRRYGLAEFAPAVRLLHAPPPDAAEH 177 Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV---EGKIAQKILRNIPFS 272 + E PA R+ +DELLA Q++L R + + P+ E + ++ +PF+ Sbjct: 178 ELMERIHPAWRRIKFDELLAQQLSLAAARAARRVKRAEPLPASQDEDGLVARLYEALPFA 237 Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332 T +Q+ + +I D++Q M R+LQGDVGSGKT+VA IA A A+ Q +MAP I Sbjct: 238 LTGAQQRVVAEIAADLAQPYPMHRLLQGDVGSGKTVVAAIAAAQAIACEAQVALMAPTEI 297 Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392 LA+QH+ + + + + V ++G++ RR+A +A G +++GT AL QD + + Sbjct: 298 LAEQHFRKLVGWLEPLGVAVAWLSGSLSAKARREAAAAVADGSVQLVVGTQALIQDHVMF 357 Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATA------PHVLLMTATPIPRTLVLTSLGDIDIS 446 +L L IVDEQHRFGV QRL L++K PH L M+ATPIPRTL +T D+D+S Sbjct: 358 QRLGLSIVDEQHRFGVGQRLALSRKGETGRGVIVPHQLNMSATPIPRTLAMTFFADLDVS 417 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 I E P GR P+ T ++ R +EVI + +G++AYW+CP +EE + ++ V+ Sbjct: 418 VIDELPPGRTPVVTKLVADARREEVIGHIAHAARQGRQAYWVCPLVEESEALELQTAVDT 477 Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 ++ I ++HGR+ +K VM +F+ G LL+ATTVIEVG+DV +AS+++I Sbjct: 478 HEAMRAALPDLRIGLVHGRLPQAEKAEVMRAFREGEIDLLVATTVIEVGVDVPNASLMVI 537 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625 E+AE FGLAQLHQLRGRVGRG S C+LLY PLS+ + RL + T DGF IA DL Sbjct: 538 EHAERFGLAQLHQLRGRVGRGTAESICVLLYQAPLSQVARQRLRAMFETSDGFEIARRDL 597 Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676 +QR GE LG +QSG+ A E ++ E AR+ A + + P+ + Sbjct: 598 EQRGPGEFLGTRQSGLALLRFADLEADVAIAEQAREAAVWLRAKHPEAVAA 648 >gi|33601915|ref|NP_889475.1| ATP-dependent DNA helicase [Bordetella bronchiseptica RB50] gi|33576352|emb|CAE33431.1| ATP-dependent DNA helicase [Bordetella bronchiseptica RB50] Length = 663 Score = 360 bits (925), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 234/651 (35%), Positives = 355/651 (54%), Gaps = 25/651 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 D + + P + D +S + + G I + S + RR +L D +GE+ Sbjct: 6 DFVLHLPLRYEDETRVTPVSSLRPGFAAQVEGEILR-SEVLYRPRRQLTAVLADDSGELQ 64 Query: 103 L--LFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAV 159 L L FY + V GR++ G+++ MVHP +S D P + V Sbjct: 65 LRWLNFYPSQQKQLTV---GRRLRARGEVRGGLFGREMVHPRM---SSADQPLPASLTPV 118 Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP----RKA 215 Y GL +K I +AL+R L + + ++ ++ A A ++H P + Sbjct: 119 YPSTDGLPQPTLRKAIGQALARAD-LSDTLPEEARRRYGLAEFAPAVRLLHAPPPDAAEH 177 Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV---EGKIAQKILRNIPFS 272 + E PA R+ +DELLA Q++L R + + P+ E + ++ +PF+ Sbjct: 178 ELMERIHPAWRRIKFDELLAQQLSLAAARAARRVKRAEPLPASQDEDGLVARLYEALPFA 237 Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332 T +Q+ + +I D++Q M R+LQGDVGSGKT+VA IA A A+ G Q +MAP I Sbjct: 238 LTGAQQRVVAEIAADLAQPYPMHRLLQGDVGSGKTVVAAIAAAQAIACGAQVALMAPTEI 297 Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392 LA+QH+ + + + + V ++G++ RR+A +A G +++GT AL QD + + Sbjct: 298 LAEQHFRKLVGWLEPLGVAVAWLSGSLSAKARREAAAAVADGSVQLVVGTQALIQDHVMF 357 Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATA------PHVLLMTATPIPRTLVLTSLGDIDIS 446 +L L IVDEQHRFGV QRL L++K PH L M+ATPIPRTL +T D+D+S Sbjct: 358 QRLGLSIVDEQHRFGVGQRLALSRKGETGRGVIVPHQLNMSATPIPRTLAMTFFADLDVS 417 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 I E P GR P+ T ++ R +EVI + +G++AYW+CP +EE + ++ V+ Sbjct: 418 VIDELPPGRTPVVTKLVADARREEVIGHIAHAARQGRQAYWVCPLVEESEALELQTAVDT 477 Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 ++ I ++HGR+ +K VM +F+ G LL+ATTVIEVG+DV +AS+++I Sbjct: 478 HEAMRAALPDLRIGLVHGRLPQAEKAEVMRAFREGEIDLLVATTVIEVGVDVPNASLMVI 537 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625 E+AE FGLAQLHQLRGRVGRG S C+LLY PLS+ + RL + T DGF IA DL Sbjct: 538 EHAERFGLAQLHQLRGRVGRGTAESICVLLYQAPLSQVARQRLRAMFETSDGFEIARRDL 597 Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676 +QR GE LG +QSG+ A E ++ E AR+ A + + P+ + Sbjct: 598 EQRGPGEFLGTRQSGLALLRFADLEADVAIAEQAREAAVWLRAKHPEAVAA 648 >gi|315640125|ref|ZP_07895247.1| DNA helicase RecG [Enterococcus italicus DSM 15952] gi|315484102|gb|EFU74576.1| DNA helicase RecG [Enterococcus italicus DSM 15952] Length = 674 Score = 360 bits (925), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 229/664 (34%), Positives = 369/664 (55%), Gaps = 27/664 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 ++ GVGKK L+++ LL Y+P + D R +++EI ++ VT+ Sbjct: 4 VAVLAGVGKKRQQALAEL------GIESIESLLTYYPFRYEDVQQR-QLAEIQDQEKVTL 56 Query: 73 TGYI---SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 G + + S F +K R ++ D ++ + F+ + LK+ +I V GK Sbjct: 57 KGTVVSPAVMSRFGYKKTRLQFRMMQDR--DVFQVSFFNQP-YLKDKIILSEEIVVYGKW 113 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188 + + + IF + + +F VY + + + +I +A ++ + E Sbjct: 114 DAKRKALTGMK---IFGSGKQDSFA---PVYHVSKKIRQATLQDLIKQAFAQFGEQIEEI 167 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248 + L+ K +A +H P D + A+ R+ ++E Q+ L +++ K Sbjct: 168 LPVQLVDKYRLMERKQAIYAMHFP---DDMDTYRQAKRRVVFEEFFLFQMKLQGLKQAEK 224 Query: 249 KEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 E+ G+ ++ + K + ++ +PF T +Q+ +I D+ M R+LQGDVGSGKT Sbjct: 225 AEVNGLCLSYDAKQLKAFIQKLPFELTDAQKRVTNEICADLKSPKHMQRLLQGDVGSGKT 284 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +VA IA+ A + AG Q +M P ILAQQH E + V ++TG+ R+ Sbjct: 285 IVAAIALYATITAGFQGALMVPTEILAQQHMESFVSLFAAMDVTVALLTGSTKTKERKHI 344 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 L I G I+IGTHAL Q+ + + +L LVI DEQHRFGV QR L +K P VL MT Sbjct: 345 LAGIKDGSIDILIGTHALIQEDVDFAQLGLVITDEQHRFGVNQRKVLREKGWKPDVLFMT 404 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T+ G++D+S I E P GR PI+T + ++D V+ K L++G + Y Sbjct: 405 ATPIPRTLAITAYGEMDVSLIDELPKGRIPIETRWVRPPQLDTVLHWAKKELAKGHQMYV 464 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545 ICP IEE + + ++ + + L E F +++ ++HG+M +KE VM+ FK ++L Sbjct: 465 ICPLIEESEMLDVQNAQKIYEELKEFFEPINAVGLLHGKMKPSEKEQVMEQFKENQTQIL 524 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 ++TTVIEVG++V +A+++II +A+ FGLAQLHQLRGRVGRG S CIL+ +P ++ Sbjct: 525 VSTTVIEVGVNVPNATLMIIIDADRFGLAQLHQLRGRVGRGVSASYCILVANPK-NEVGK 583 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665 R+ V+ T +GF+++E DL R GEI G +QSG+P+FLIA H ++LE+A+++A+ Sbjct: 584 ERMKVMTETTNGFVVSERDLALRGPGEIFGQRQSGLPEFLIADIVEHATVLEVAKQEAES 643 Query: 666 ILTQ 669 I Q Sbjct: 644 IWQQ 647 >gi|116617652|ref|YP_818023.1| ATP-dependent DNA helicase RecG [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096499|gb|ABJ61650.1| ATP-dependent DNA helicase RecG [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 676 Score = 360 bits (925), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 200/467 (42%), Positives = 290/467 (62%), Gaps = 8/467 (1%) Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268 I N D E AR +A++E Q+ L L++ K G IN + K K Sbjct: 187 IENMHFPADMEQAKLARRSIAFEEFFIFQMRLQLLKLADKNFSGEGINYDSKALNKFEAG 246 Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 +PF+ T +Q+ + +IL D + M R+LQGDVGSGKT+VA IA+ A V AG QA +MA Sbjct: 247 LPFTLTGAQQKVVSEILTDQKRPVHMNRLLQGDVGSGKTVVAAIALYAVVTAGMQAALMA 306 Query: 329 PIGILAQQHYEFIKKYTQNT--QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 P ILAQQH + + + I +E++T M A RR+ LE +A G I++GTHAL Sbjct: 307 PTEILAQQHAINLALMFEKSGVDIRIELLTSGMKAAARRQLLEDLADGTIDILVGTHALL 366 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 Q + ++ L L ++DEQHRFGV QR KL + P +L MTATPIPRTL +T+ G++D+S Sbjct: 367 QPDVMFHHLGLAVIDEQHRFGVNQRAKLRENGVNPDILAMTATPIPRTLSITTYGEMDVS 426 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 I + P GRK I+T I N++D I LK LSEG +AY + P IEE + + ++ Sbjct: 427 IIDQLPNGRKQIQTRKISHNQLDSAINFLKQQLSEGAQAYVVTPLIEESEALDVQNAQAM 486 Query: 507 FNSLH-EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + +L E +I ++HGR+S+ +K+++M FK ++L+ATTVIEVG+DV +ASI++I Sbjct: 487 YEALQLELPNDTIGLLHGRLSNDEKKALMADFKRNKIQVLVATTVIEVGVDVPNASIMLI 546 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEE 623 +A+ FGLAQLHQLRGRVGRG S IL+ P K Y RL + T DGF++A++ Sbjct: 547 MDADRFGLAQLHQLRGRVGRGTRQSYTILVADP---KTDYGRARLDAMVETTDGFILAQK 603 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670 DL+ R G+ILG KQSG+P+F + P ++E+A+++A +++ D Sbjct: 604 DLELRGSGDILGTKQSGVPEFAVGDPIKDLKMMEVAQQEAISMVSTD 650 >gi|323442318|gb|EGA99948.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus O46] Length = 686 Score = 360 bits (925), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 216/636 (33%), Positives = 359/636 (56%), Gaps = 24/636 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DL+ Y P+ + D +++ ++ VTI G + R K+ ++ I Sbjct: 37 DLVLYLPTRYEDNTV-IDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIA 95 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--------DVNFP 154 + + LK + ITV GK ++K I + +F NSQ DV Sbjct: 96 VKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEIT---GNRVFFNSQGTQTQENADVQ-- 150 Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 +E VY + G+ + I +AL+ + + EW+ +L +K ++ N +H+P+ Sbjct: 151 -LEPVYRIKEGIKQKQIRDQIRQALNDVTI-HEWLTDELREKYKLETLDFTLNTLHHPKS 208 Query: 215 AKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 +D AR A+ EL ++ + L R + + I I+ + + + +PF Sbjct: 209 KEDL---LRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDLDQVKSFIDRLPFEL 265 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T++Q+S++ +I +D+ RM R+LQGDVGSGKT+VA I M A AG Q+ +M P IL Sbjct: 266 TEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEIL 325 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QH E + ++ + V ++TG++ R+ LE++ +G +IGTHAL QD + ++ Sbjct: 326 AEQHAESLIALFGDS-MNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFH 384 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 + LVI DEQHRFGV QR L +K +VL MTATPIPRTL ++ G++D+S I + P Sbjct: 385 NVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPK 444 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHE 512 GRKPI T + D+V+ ++ L +G++AY ICP IE + + ++VV + SL + Sbjct: 445 GRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQ 504 Query: 513 HF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 ++ S + ++HG++S +K+ VM F N +L++TTV+EVG++V +A+ ++I +A+ F Sbjct: 505 YYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRF 564 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631 GL+ LHQLRGRVGR ++ S C+L+ P ++ R++++ T DGF ++E DL+ R G Sbjct: 565 GLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPG 623 Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 + G+KQSG+P FL+A +LE+AR +A ++ Sbjct: 624 DFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELI 659 >gi|258423932|ref|ZP_05686817.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9635] gi|257845961|gb|EEV69990.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9635] Length = 686 Score = 360 bits (924), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 214/633 (33%), Positives = 357/633 (56%), Gaps = 18/633 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DL+ Y P+ + D +++ ++ VTI G + R K+ ++ I Sbjct: 37 DLVLYLPTRYEDNTV-IDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIA 95 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-----LIE 157 + + LK + ITV GK ++K I + +F NSQ +E Sbjct: 96 VKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEIT---GNRVFFNSQGTQTQENADIQLE 152 Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 VY + G+ + I +AL+ + + EW+ +L +K ++ N +H+P+ +D Sbjct: 153 PVYRIKEGIKQKQIRDQIRQALNDVTI-HEWLTDELREKYKLETLDFTLNTLHHPKSKED 211 Query: 218 FEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276 AR A+ EL ++ + L R + + I I+ + + + +PF T++ Sbjct: 212 L---LRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDLDQVKSFIDRLPFELTEA 268 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q+S++ +I +D+ RM R+LQGDVGSGKT+VA I M A AG Q+ +M P ILA+Q Sbjct: 269 QKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEILAEQ 328 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 H E + ++ + V ++TG++ R+ LE++ +G +IGTHAL QD + ++ + Sbjct: 329 HAESLIALFGDS-MNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFHNVG 387 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 LVI DEQHRFGV QR L +K +VL MTATPIPRTL ++ G++D+S I + P GRK Sbjct: 388 LVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRK 447 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHF- 514 PI T + D+V+ ++ L +G++AY ICP IE + + ++VV + SL +++ Sbjct: 448 PIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQYYG 507 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 S + ++HG++S +K+ VM F N +L++TTV+EVG++V +A+ ++I +A+ FGL+ Sbjct: 508 VSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRFGLS 567 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 LHQLRGRVGR ++ S C+L+ P ++ R++++ T DGF ++E DL+ R G+ Sbjct: 568 TLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPGDFF 626 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 G+KQSG+P FL+A +LE+AR +A ++ Sbjct: 627 GVKQSGLPDFLVANLVEDYRMLEVARDEAAELI 659 >gi|116492606|ref|YP_804341.1| ATP-dependent DNA helicase RecG [Pediococcus pentosaceus ATCC 25745] gi|116102756|gb|ABJ67899.1| ATP-dependent DNA helicase RecG [Pediococcus pentosaceus ATCC 25745] Length = 675 Score = 360 bits (924), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 222/654 (33%), Positives = 369/654 (56%), Gaps = 32/654 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS---FQLQKRR-PYKILLNDGT 98 DL+ Y+P + D + + + +++ VT G ++ + F QK R +++L+ G Sbjct: 32 DLITYYPFRYEDLAAKEPQNVVDQQK-VTFQGVVATQPTVARFGRQKVRVNFRLLI--GN 88 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 + + FF + +KN +I V GK NR + I ++ N ++ Sbjct: 89 ESVMVTFFNQP--WIKNQINADEEIAVYGKWDA--NRRSLTGIKII---DEEAN---LQP 138 Query: 159 VYSLPTGLSVDLFKKIIVEALSRL-----PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213 VY + +++ +A+++ V+PE +L+ K +H P Sbjct: 139 VYPANKHIRQATIQQLATDAINQYQEQIQDVIPE----ELITKYRLLHRLAMVQALHFP- 193 Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 D + T AR ++E L Q+ L L++ + + E G I + ++ ++ ++ +PF Sbjct: 194 --ADDQKTRDARRTAMFEEFLTFQMGLQLVKSRERIENGTAIKYQIQLVREFIQQLPFEL 251 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T +Q+ +IL ++ M R+LQGDVGSGKT+VA IAM A + AG QA +MAP IL Sbjct: 252 TDAQKRVTNEILANLKSPTHMNRLLQGDVGSGKTVVAAIAMYATLTAGMQATLMAPTEIL 311 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QH + ++ + + + ++ G + + R + L I +G+ I++GTHA+ Q+ +Q+ Sbjct: 312 AEQHANNLSRFFEKLDVKIALLVGGIRKKIRDEMLAEIKNGEIDIVVGTHAIIQEDVQFK 371 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L L I+DEQHRFGV QR L +K AP +L MTATPIPRTL +T+ GD+D+S I + PA Sbjct: 372 NLGLGIIDEQHRFGVHQRQLLREKGAAPDILAMTATPIPRTLAITTYGDMDVSIIDQAPA 431 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 GRKPI T + ++V+ + + G++A+ + P IEE + + ++ +E + L E Sbjct: 432 GRKPIITKWVKRGEWEKVLAFMTKEFANGRQAFIVTPLIEESEAMDLQNAMELYQELCEF 491 Query: 514 FTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 F IAI+HG+M K+ +M FK G L++TTVIEVG+DV +A++++I++A+ F Sbjct: 492 FGEKYPIAILHGKMDGAQKDQIMADFKEGKYMGLVSTTVIEVGVDVPNATLMVIQDADRF 551 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631 GLAQLHQLRGRVGRG+ + CIL+ P ++ R+ ++ +T DGF I+E DLK R +G Sbjct: 552 GLAQLHQLRGRVGRGQYQAYCILVADPK-NEVGKQRMQIMVDTNDGFEISEADLKMRGQG 610 Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685 ++ G +QSG+P+F + P + L+ A+ DA I++Q R Q++R+ L Sbjct: 611 DLFGKQQSGVPEFKVGDPVVDLGALQTAQIDAAKIVSQPAWDQDPRYQNLRLYL 664 >gi|227510455|ref|ZP_03940504.1| DNA helicase RecG [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190107|gb|EEI70174.1| DNA helicase RecG [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 691 Score = 360 bits (924), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 236/680 (34%), Positives = 375/680 (55%), Gaps = 45/680 (6%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64 L L ++ +GVG K + L+K+ IN N DLL Y P + D + + I Sbjct: 16 LTSLNDSVAVLKGVGTKRLVALNKLGINTIN-------DLLTYFPRRYDDLSIKDLSNAI 68 Query: 65 SEERIVTITGYI---SQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 ++ VT+ G + + F +K R +++ +ND T+ FF + LK Sbjct: 69 DGQK-VTVKGMVIAPPTLTYFGRKKSRLVFRLKINDNI--YTVSFFNQ--PWLKKEVNPN 123 Query: 121 RKITVTGKIKKLKN-----RIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKII 175 +I V G + +N +I+ F + N + +A ++ D++ + Sbjct: 124 DEIIVFGTYNRSRNQIQGMKILTDQSSNSFDSIYPANKEVKQATIKSLIKMAYDMYHTQL 183 Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235 V+P+ + + +SFP + +P+ A+ T+ E + L Sbjct: 184 TN------VIPDQLRAKY-RLESFPDTIRNIHFPESPQAAQRAFRTAKFMEFFLF--ALK 234 Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 QI L K + I+ + + +K +++PF T +Q+ +++IL D+++ +M Sbjct: 235 VQI---LKESHRKTDPHAQIHYQQSLLEKFQKSLPFDLTPAQQKVVREILADLNRPIQMN 291 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R+LQGDVGSGKT+VA +A+ A + A QA IMAP ILA+QH K + + ++ Sbjct: 292 RLLQGDVGSGKTVVAAMAILATISAHKQAAIMAPTEILAEQHANNFAKMFDGLDVNIALL 351 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 TG+ A RR L I G+ +I+GTHALFQ+ +QY L L ++DEQHRFGV QR L Sbjct: 352 TGDTSAAARRAMLPSIQSGEVDLIVGTHALFQNDVQYDNLGLAVIDEQHRFGVNQRQALR 411 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 QK T+ ++L MTATPIPRTL +T GD+D+S I + P+GRKPIKT I + + I + Sbjct: 412 QKGTSTNMLAMTATPIPRTLAITMYGDMDVSIINQLPSGRKPIKTTWITSAKTNSAIRFV 471 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVV---ERFNSLHE-HFTSSIAIIHGRMSDIDKE 531 K L G + Y + P IEE + + ++ V ERF ++ E F + ++HG+MS+ +K+ Sbjct: 472 KKQLDNGNQVYVVTPLIEESEAVDMKNAVAIFERFKTIFEPQF--KVGLLHGQMSNQEKD 529 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 M SFKN ++L+ATTVIEVG+DV +A+ ++I +A+HFGLAQLHQLRGRVGRG S Sbjct: 530 DTMVSFKNNQFQVLVATTVIEVGVDVANANTMLIFDADHFGLAQLHQLRGRVGRGSTQSY 589 Query: 592 CILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649 C+L+ P KN R+ + ++ +GF ++++DL+ R +G+I G KQSGMP F +A P Sbjct: 590 CVLIADP---KNELGKERMKAVASSTNGFFLSQKDLELRGQGDITGAKQSGMPDFKVADP 646 Query: 650 ELHDSLLEIARKDAKHILTQ 669 ++L +A ++A++I + Sbjct: 647 VGDLNILTVANQEAQNITAE 666 >gi|315038623|ref|YP_004032191.1| ATP-dependent DNA helicase RecG [Lactobacillus amylovorus GRL 1112] gi|312276756|gb|ADQ59396.1| ATP-dependent DNA helicase RecG [Lactobacillus amylovorus GRL 1112] Length = 678 Score = 360 bits (924), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 224/685 (32%), Positives = 378/685 (55%), Gaps = 26/685 (3%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 N LFAP++ +GVG K + + G+ DLLFY P + + P + +I + Sbjct: 4 NALFAPVTDLKGVGTKTA------ADLGSLGIYSIYDLLFYFPFRYDELQTLP-LDQIMD 56 Query: 67 ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122 + V + G ++ S F +K R +KI ++ +I ++ F+ + LK+ G++ Sbjct: 57 GQKVMLKGIVATEPFVSGFGYKKSRLSFKIRIDH---DIVMVNFFNQP-WLKSKIKIGQE 112 Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SR 181 + + GK + + + F +++ N + +Y + + +I A+ S Sbjct: 113 VAIYGKYNVARQSL----SAFKFVAAKE-NDSGMAPIYPVNRHVKQKKLINLINLAIDSF 167 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 L + + + K++++K E +H+P+ D E A+ + E ++ L Sbjct: 168 LDQVQDIVPKEIMEKYRLLHDQEIIQKMHHPKNGHDAEL---AKRSAIFREFFIFELQLA 224 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L+ K+ G P + K + +++PF + Q+ + +I DM +M R+LQGD Sbjct: 225 LLANHDGKQQGYPKKYDLKEIANLTKSLPFELSDDQKKVVNEIFADMHSDGQMRRLLQGD 284 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VA+ A+ AA+ AG QA +M P ILA QH++ I + + + V ++TGN Sbjct: 285 VGSGKTIVAVYAIFAAISAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTKT 344 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 RR+ + G +++IGTHAL Q ++ + KL LVI+DEQHRFGV QR L K P Sbjct: 345 LERREIYCELTDGTINVVIGTHALIQKNVIFKKLGLVIIDEQHRFGVGQRQALINKGDNP 404 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 +L MTATPIPRTL LT GD+ +S+I PAGRKPI + +++ +V + + L + Sbjct: 405 DILAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISAWKTSSQMKDVYKLMYEQLDQ 464 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSL-HEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540 G + Y + P I E + + ++ E L H+ ++ ++HG+M K+ +M +F +G Sbjct: 465 GFQIYAVTPLITESETLDLKNAEELHEKLSHDFPDQNVVLLHGQMPGAKKDEIMSAFASG 524 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+ S CI + P Sbjct: 525 EINILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGQTQSYCIFIADPK- 583 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + + R+ ++ T +GF +AEEDLK R EG++ G QSG+P+F + + + L +A+ Sbjct: 584 TDSGKARMKIIAATNNGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYNTLVVAQ 643 Query: 661 KDAKHILTQDPDLTSVRGQSIRILL 685 K A+ ++ DP+LTS S++ +L Sbjct: 644 KVARELVKADPELTSPEHNSLKQVL 668 >gi|86133709|ref|ZP_01052291.1| DEAD/DEAH box helicase [Polaribacter sp. MED152] gi|85820572|gb|EAQ41719.1| DEAD/DEAH box helicase [Polaribacter sp. MED152] Length = 698 Score = 360 bits (924), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 237/679 (34%), Positives = 370/679 (54%), Gaps = 29/679 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS-EERIV 70 P++ G+ + + L + N DLL + P +ID+ I E+ V Sbjct: 6 PITYISGISVQRATLLYSELGIKTCN-----DLLNFFPFRYIDKTKFHAIKELQPNSSEV 60 Query: 71 TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 + G I S ++ D TG + L++F + + +K+ V GK+ Sbjct: 61 QVVGKIINVKSVAQKRGSRLVATFQDATGSMELVWF-KGQKWIKDSLKTDVPYVVYGKLN 119 Query: 131 KLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLP-TGLSVDLFKKIIVEALSRL-P 183 + HP + Q P+ + L +G+S + + I + L + Sbjct: 120 HYNGSFSIPHPEMELVSEYKKKLQTKMQPIYHSTEKLTNSGVSNKMIRSYIQKLLQQFYD 179 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 + E + +++ +A +H P+ ++ + A+ RL ++EL I L L+ Sbjct: 180 GIQESLSTEIINDFKLMKKRDALLNVHFPKSQENL---AKAQNRLKFEELFF--IQLQLV 234 Query: 244 RKQFKKEIGIP----INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 RK+ + I NV Q +PF+ T +Q+ +K+I +D++ M R+LQ Sbjct: 235 RKKLINKAKIKGFVFENVGAIFNQFYSEKLPFNLTNAQKRVLKEIRKDVASGAHMNRLLQ 294 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT+VAL+ A++ G QA IMAP ILA QH+ + + + I V+I+TG++ Sbjct: 295 GDVGSGKTIVALLTTLLAIDNGYQATIMAPTEILANQHFIAVSELVEGMNIKVDILTGSV 354 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 RR+ E + G+ HI+IGTHAL +D +++ L + I+DEQHRFGV+QR KL K + Sbjct: 355 RTKKRREIHEGLEDGKLHILIGTHALLEDKVKFKNLGIAIIDEQHRFGVKQRAKLWAKNS 414 Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV-IIPINRIDEVIERLKV 477 PH+L+MTATPIPRTL ++ GD+DIS I E P GRK IKTV NR+ V + +K Sbjct: 415 LPPHILVMTATPIPRTLAMSVYGDLDISVIDELPPGRKEIKTVHRFDSNRL-SVFKFMKD 473 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVM 534 +++GK+ Y + P I+E + +++ +++ + S+ F S I+I+HG+M DK+ M Sbjct: 474 EIAKGKQVYIVYPLIQESEAMDYKDLMDGYESVAREFPSPKYQISIVHGKMKPADKDYEM 533 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F G ++++ATTVIEVG++V +AS++IIE++E FGL+QLHQLRGRVGRG + S CIL Sbjct: 534 QRFVKGETQIMVATTVIEVGVNVPNASVMIIESSERFGLSQLHQLRGRVGRGADQSYCIL 593 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 L LS+ TRL + +T DGF IAE DLK R G ++G +QSG+ IA Sbjct: 594 LSSYKLSEEGKTRLKTMVDTTDGFKIAEVDLKLRGPGNLMGTQQSGVLNLKIADVAKDSK 653 Query: 655 LLEIARKDAKHILTQDPDL 673 +L AR A +L +DP+L Sbjct: 654 ILVAARNTAIDLLQEDPNL 672 >gi|148657621|ref|YP_001277826.1| ATP-dependent DNA helicase RecG [Roseiflexus sp. RS-1] gi|148569731|gb|ABQ91876.1| ATP-dependent DNA helicase RecG [Roseiflexus sp. RS-1] Length = 842 Score = 360 bits (923), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 234/677 (34%), Positives = 356/677 (52%), Gaps = 53/677 (7%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP-YKILLNDGTGEI 101 DLL++ P + D I+E+ + TI + + ++ +L+ D TG + Sbjct: 150 DLLYHFPHRYDDFTSHRTIAELQPGAVETIVAEVLDARTVPMKSGGTRLDVLVGDETGTL 209 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVY 160 ++FF + L F G K+ ++GKI M P + F + ++ + V+ Sbjct: 210 KVVFF--RQPWLAQRFTVGTKVVLSGKIGIYDGLRQMASPEWQPFTDDDLIHVGRLVPVH 267 Query: 161 SLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 L GL + +I + R P+L + + +L++ +++A IH P + E Sbjct: 268 PLTRGLVERSARTLIKHVVDRCAPMLEDHLPPAVLERTGLMPLSQAIAQIHFP---ESHE 324 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 AR RL +DE L Q+ +L R ++ + G I + + LR +PF T +Q Sbjct: 325 MLERARRRLGFDEFLFIQLGVLQRRVIWQAQQGYAITRRDDVHEAFLRQLPFELTGAQVR 384 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 A+++I DM + M R+LQGDVGSGKT+VA A + AG QA IMAP ILA+QHY Sbjct: 385 ALEEIFADMERPVPMARLLQGDVGSGKTVVAAAAALQVIAAGFQAAIMAPTEILAEQHYR 444 Query: 340 FIKKYT----------------------------------------QNTQIIVEIITGNM 359 ++ + V ++TG++ Sbjct: 445 SLRSLLGKVPVPRDDRHAPMDDLDPEQRERLEEIRRILGMSGDDDLDGRGVRVALLTGSL 504 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 RR+ LE IA G +I+GTHAL + +QY L L ++DEQHRFGV+QR +L K Sbjct: 505 GAKERRRVLEGIARGDIDLIVGTHALISEGVQYAALGLAVIDEQHRFGVEQRQRLKDKGY 564 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 PH+L+MTATPIPRTL LT GD+D+S + E P GR+ IKT I ++ ++ + Sbjct: 565 NPHMLVMTATPIPRTLTLTIYGDLDVSILDELPPGRQEIKTRWITTVEREKAYRHIRREV 624 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSF 537 ++G++A+ ICP ++E ++ + S E +L IA+IHG+M +K++VM +F Sbjct: 625 AKGRQAFVICPLVDESEKVDLPSAEEMHATLSRDVFPDLRIALIHGKMPPREKDAVMIAF 684 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 +N +L+AT VIEVGIDV +A+ I+IE AE FGLAQLHQ RGRVGRG S CIL+ Sbjct: 685 RNHEYDILVATAVIEVGIDVPNATTILIEGAERFGLAQLHQFRGRVGRGIHQSYCILVCD 744 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LL 656 ++ + R++ ++ DGF +AE DL+ R GE G +QSG P +AQ L D+ LL Sbjct: 745 KDQNEVTRQRMAAMEQISDGFRLAEIDLQLRGPGEFFGTRQSGTPDLKVAQ--LADTRLL 802 Query: 657 EIARKDAKHILTQDPDL 673 A ++A+ IL DP L Sbjct: 803 HTAYREAQKILADDPRL 819 >gi|327183827|gb|AEA32274.1| ATP-dependent DNA helicase RecG [Lactobacillus amylovorus GRL 1118] Length = 678 Score = 360 bits (923), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 224/685 (32%), Positives = 378/685 (55%), Gaps = 26/685 (3%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 N LFAP++ +GVG K + + G+ DLLFY P + + P + +I + Sbjct: 4 NALFAPVTDLKGVGTKTA------ADLGSLGIYSIYDLLFYFPFRYDELQTLP-LDQIMD 56 Query: 67 ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122 + V + G ++ S F +K R +KI ++ +I ++ F+ + LK+ G++ Sbjct: 57 GQKVMLKGIVATEPFVSGFGYKKSRLSFKIRIDH---DIVMVNFFNQP-WLKSKIEIGQE 112 Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SR 181 + + GK + + + F +++ N + +Y + + +I A+ S Sbjct: 113 VAIYGKYNVARQSL----SAFKFVAAKE-NDSGMAPIYPVNRHVKQKKLINLINLAIDSF 167 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 L + + + K++++K E +H+P+ D E A+ + E ++ L Sbjct: 168 LDQVQDIVPKEIMEKYRLLHDQEIIQKMHHPKNGHDAEL---AKRSAIFREFFIFELQLA 224 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L+ K+ G P + K + +++PF + Q+ + +I DM +M R+LQGD Sbjct: 225 LLANHDGKQQGYPKKYDLKEIANLTKSLPFELSDDQKKVVNEIFADMHSDGQMRRLLQGD 284 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VA+ A+ AA+ AG QA +M P ILA QH++ I + + + V ++TGN Sbjct: 285 VGSGKTIVAVYAIFAAISAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTKT 344 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 RR+ + G +++IGTHAL Q ++ + KL LVI+DEQHRFGV QR L K P Sbjct: 345 LERREIYCELTDGTINVVIGTHALIQKNVIFKKLGLVIIDEQHRFGVGQRQALINKGDNP 404 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 +L MTATPIPRTL LT GD+ +S+I PAGRKPI + +++ +V + + L + Sbjct: 405 DILAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISAWKTSSQMKDVYKLMYEQLDQ 464 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSL-HEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540 G + Y + P I E + + ++ E L H+ ++ ++HG+M K+ +M +F +G Sbjct: 465 GFQIYAVTPLITESETLDLKNAEELHEKLSHDFPDQNVVLLHGQMPGAKKDEIMSAFASG 524 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+ S CI + P Sbjct: 525 EINILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGQTQSYCIFIADPK- 583 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + + R+ ++ T +GF +AEEDLK R EG++ G QSG+P+F + + + L +A+ Sbjct: 584 TDSGKARMKIIAATNNGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYNTLVVAQ 643 Query: 661 KDAKHILTQDPDLTSVRGQSIRILL 685 K A+ ++ DP+LTS S++ +L Sbjct: 644 KVARELVKADPELTSPEHNSLKQVL 668 >gi|160892744|ref|ZP_02073534.1| hypothetical protein CLOL250_00275 [Clostridium sp. L2-50] gi|156865785|gb|EDO59216.1| hypothetical protein CLOL250_00275 [Clostridium sp. L2-50] Length = 676 Score = 360 bits (923), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 226/658 (34%), Positives = 353/658 (53%), Gaps = 30/658 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 ++ +G+G+K + L+K+ + DL+ Y+P ++I I +I + + Sbjct: 7 VTCIKGIGEKTAGNLAKL------GISTVSDLIHYYPRTYITYMDPVDIQDIQADERQAV 60 Query: 73 TGYISQHSSFQLQKRRPYKI---LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + ++ +S +++K R + I D TG I L +F L+N F G + G++ Sbjct: 61 S--VTINSRVEVKKLRGFSIATAYAKDYTGTIKLTWF--NCPFLRNYFHIGDRYIFVGEV 116 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 K M P Y + VY G++ +K + L + L ++I Sbjct: 117 KYKNGMYTMSQPEYYTVPQYQEILKEWQPVYGCTAGITSKTIQKAVKGTLPLIQTLSDYI 176 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249 +D+ + EA IH P A +R+A+DE + K+ Sbjct: 177 PEDIRDEYDLMRANEAVTHIHFPDTEDHLR---AAIKRVAFDEFYE----FIENMHSLKE 229 Query: 250 EIGIPINVEGKI-----AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 + N + KI + ++P+ T +Q A++DI+ DM+ ++ M R++QGDVGS Sbjct: 230 HDTVKYN-QAKIPFTEQVTGFIESLPYRLTGAQMDAVRDIMADMNSEHVMNRLVQGDVGS 288 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKT+VA IA+ A G Q VIMAP +LA QH++ + + I V ++TG+M + Sbjct: 289 GKTIVAAIALFACATQGYQGVIMAPTEVLANQHFKELTGLFEPYGIHVTLLTGSMTAKEK 348 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424 R+A + IA +A +I+GTHAL QD ++Y L LV+ DEQHRFGV+QR KL+ K PHVL Sbjct: 349 REAYQEIAEHRADVIVGTHALIQDKVEYDNLALVVTDEQHRFGVRQREKLSLKGGTPHVL 408 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 +M+ATPIPRTL + GD+DIS I E PAGR PIK ++ + + ++ + +G + Sbjct: 409 VMSATPIPRTLAIIMYGDLDISVINELPAGRIPIKNCVVDESYRPKAQAFIRAEVKKGHQ 468 Query: 485 AYWICPQIEEKKE-SNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGT 541 Y +CP +EE + + +VVE L + SSI A +HG+M+ +K ++ F Sbjct: 469 VYVVCPMVEESEALDDVANVVEYSEDLSQKLDSSIHVAYLHGKMTGDEKNRILTDFYEKK 528 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L++TTVIEVGI+ +A+++++ENAE FGLA LHQLRGRVGRG S CI + + Sbjct: 529 VDVLVSTTVIEVGINNPNATVMMVENAERFGLAALHQLRGRVGRGNLQSYCIFI-SGKKN 587 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 K RL+VL ++ DGF IA EDLK+R G+ GI+QSG F + H +L+ A Sbjct: 588 KEVMERLNVLADSNDGFYIAGEDLKRRGPGDFFGIRQSGDVLFKMGDIYKHADMLKAA 645 >gi|329957261|ref|ZP_08297781.1| ATP-dependent DNA helicase RecG [Bacteroides clarus YIT 12056] gi|328522974|gb|EGF50077.1| ATP-dependent DNA helicase RecG [Bacteroides clarus YIT 12056] Length = 698 Score = 360 bits (923), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 235/675 (34%), Positives = 375/675 (55%), Gaps = 33/675 (4%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + + L+K + + F DLL+Y P ++DR I EI + + G I Sbjct: 14 GVGPQRASVLNKELGIFS-----FHDLLYYFPYKYVDRSRIYYIQEIDGTMPYIQLKGEI 68 Query: 77 SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 + ++R +DGTG + L++F + + L + ++ V GK RI Sbjct: 69 LGFETAGEGRQRRLIAHFSDGTGVVDLIWF-QGIKYLIGKYKVHQEYIVFGKPSVFNGRI 127 Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLP-----TGLSVDLFKKIIVEALSRL-PVLPEWIE 190 + HP + ++ ++ Y+ + L+ +K++ + +L LPE + Sbjct: 128 NIAHPDIDPASELKLSAMGLQPYYNTTEKMKRSSLNSHAMEKMMKNIVRQLNEPLPETLS 187 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 LL + + +A IH P A RL ++EL Q+ +L K +++ Sbjct: 188 PALLAEHHLMPLTDALLNIHFPVSPDALR---KAEYRLKFEELFYVQLNILRYAKDRQRK 244 Query: 251 IGIPINVEGKIAQKI--------LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 G + +KI RN+PF T +Q+ +K+I +D+ +M R+LQGDV Sbjct: 245 ------YRGYVFEKIGETFNGFYSRNLPFELTNAQKRVLKEIRRDLGSGKQMNRLLQGDV 298 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLVAL++M A++ G QA +MAP ILA QHYE I++ + VE++TG++ Sbjct: 299 GSGKTLVALMSMLIALDNGYQACMMAPTEILANQHYETIRELLYGMDVRVELLTGSIKGK 358 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAP 421 R L + G I+IGTHA+ +D++ + L LV++DEQHRFGV QR +L T+ P Sbjct: 359 RREAILSGLLTGDVQILIGTHAVIEDTVNFASLGLVVIDEQHRFGVAQRARLWTKSVQPP 418 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 H+L+MTATPIPRTL +T GD+D+S I E P GRKPI T+ + + ++ + E Sbjct: 419 HILVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATIHQFDSHRVSLYRSVRKQIDE 478 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNG 540 G++ Y + P I+E ++ + +++ E + + E F + +HG+M +K++ M F +G Sbjct: 479 GRQVYIVYPLIKESEKIDLKNLEEGYLHICEEFPDCKVCKVHGKMKPAEKDAQMQLFVSG 538 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S CIL+ L Sbjct: 539 EAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCILVTGYKL 598 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIA 659 ++++ RL ++ T DGF IAE DLK R G++ G +QSG+ L IA LL+ Sbjct: 599 AEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLLQYV 658 Query: 660 RKDAKHILTQDPDLT 674 R+ A+ I+ +DP+ + Sbjct: 659 REVAQAIVDKDPNAS 673 >gi|256843386|ref|ZP_05548874.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus 125-2-CHN] gi|256614806|gb|EEU20007.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus 125-2-CHN] Length = 678 Score = 360 bits (923), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 221/674 (32%), Positives = 373/674 (55%), Gaps = 28/674 (4%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 N LFAP++ +GVG K + L G+ DLLFY P + + P + +I + Sbjct: 4 NALFAPVTDLKGVGTKTTAAL------GSLGIYSIYDLLFYFPFRYDELQTLP-LDQIMD 56 Query: 67 ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122 + V + G ++ S F +K R +K+ ++ ++ ++ F+ + LKN G++ Sbjct: 57 GQKVMLKGIVATEAFVSRFGYKKTRLSFKMRIDH---DVIMVNFFNQP-WLKNKIDIGQE 112 Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + + GK + + ++ D P+ + VDL I + + + Sbjct: 113 VAIYGKYNVARQSLTAFK--FVAAKENDSGMAPIYPVNRHVKQKKLVDLINVAIDDFIDQ 170 Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 + ++PE + ++ K I + +H+P+ + + E A+ + E ++ L Sbjct: 171 VQDIVPEKLRQEYRLLKDQVIIEK----MHHPKNSHEAEL---AKRSAIFREFFIFELQL 223 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L+ + K++G + ++ +++PF + Q+ + +I DM ++M R+LQG Sbjct: 224 ALLTRNDGKQMGYAKKYDLTEIAQLTKSLPFELSDDQKHVVNEIFADMHSDSQMRRLLQG 283 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA+ A+ AA+ AG QA +M P ILA QH++ I + + + V ++TGN Sbjct: 284 DVGSGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTK 343 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 RR+ + G +++IGTHAL QDS+ + KL LVI+DEQHRFGV QR L K Sbjct: 344 TLERREIYRELTDGTINVVIGTHALIQDSVIFKKLGLVIIDEQHRFGVGQRQALINKGDQ 403 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 P +L MTATPIPRTL LT GD+ +S+I PAGRK I + +++ EV +++ L+ Sbjct: 404 PDILAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKSIISTWKTSSQMKEVYRQMQEQLN 463 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539 +G + Y + P I E + + ++ E L F + + ++HG+M K+ +M +F Sbjct: 464 QGFQIYAVTPLITESETLDLKNAEELHEKLSHDFPNHKVVLLHGQMPGAQKDEIMTAFAA 523 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+ S C+ L P Sbjct: 524 GEIDILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGQTQSYCVFLADPK 583 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 + + R+ ++ +T DGF +AEEDLK R EG++ G QSG+P+F + + + L +A Sbjct: 584 -TDSGKARMKIIASTNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYNTLVVA 642 Query: 660 RKDAKHILTQDPDL 673 +K+A+ ++ DPDL Sbjct: 643 QKEARALVAADPDL 656 >gi|221142017|ref|ZP_03566510.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus str. JKD6009] gi|302751050|gb|ADL65227.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 686 Score = 360 bits (923), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 216/636 (33%), Positives = 359/636 (56%), Gaps = 24/636 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DL+ Y P+ + D +++ ++ VTI G + R K+ ++ I Sbjct: 37 DLVLYLPTRYEDNTV-IDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIA 95 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--------DVNFP 154 + + LK + ITV GK ++K I + +F NSQ DV Sbjct: 96 VKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEIT---GNRVFFNSQGTQTQENADVQ-- 150 Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 +E VY + G+ + I +AL+ + + EW+ +L +K ++ N +H+P+ Sbjct: 151 -LEPVYRIKEGIKQKQIRDQIRQALNDVTI-HEWLTDELREKYKLETLDFTLNTLHHPKS 208 Query: 215 AKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 +D AR A+ EL ++ + L R + + I I+ + + + +PF Sbjct: 209 KEDL---LRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDIDQVKSFIDRLPFEL 265 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T++Q+S++ +I +D+ RM R+LQGDVGSGKT+VA I M A AG Q+ +M P IL Sbjct: 266 TEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEIL 325 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QH E + ++ + V ++TG++ R+ LE++ +G +IGTHAL QD + ++ Sbjct: 326 AEQHAESLMALFGDS-MNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFH 384 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 + LVI DEQHRFGV QR L +K +VL MTATPIPRTL ++ G++D+S I + P Sbjct: 385 NVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPK 444 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHE 512 GRKPI T + D+V+ ++ L +G++AY ICP IE + + ++VV + SL + Sbjct: 445 GRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQ 504 Query: 513 HF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 ++ S + ++HG++S +K+ VM F N +L++TTV+EVG++V +A+ ++I +A+ F Sbjct: 505 YYGVSRVGLLHGKLSADEKDEVMQKFSNHEINVLVSTTVVEVGVNVPNATFMMIYDADRF 564 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631 GL+ LHQLRGRVGR ++ S C+L+ P ++ R++++ T DGF ++E DL+ R G Sbjct: 565 GLSILHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPG 623 Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 + G+KQSG+P FL+A +LE+AR +A ++ Sbjct: 624 DFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELI 659 >gi|197301673|ref|ZP_03166743.1| hypothetical protein RUMLAC_00399 [Ruminococcus lactaris ATCC 29176] gi|197299113|gb|EDY33643.1| hypothetical protein RUMLAC_00399 [Ruminococcus lactaris ATCC 29176] Length = 686 Score = 360 bits (923), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 237/677 (35%), Positives = 375/677 (55%), Gaps = 32/677 (4%) Query: 11 APLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69 A +ST +G+G+K LFL + + DLL Y+P ++ +SE+ E I Sbjct: 5 AGISTLKGIGEKTEKLFLKLGVATVD-------DLLHYYPRTYEIFGPPVPVSEVQEGHI 57 Query: 70 VTITGYISQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 T++G + K L L D TG + +++F + L+N + + G+ Sbjct: 58 CTVSGAVFGRIQVSGTKNMQVTTLYLKDLTGTLKVIWF--RMPFLRNTLGRSGPVILRGR 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPL--IEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186 + + ++ ++M HP I+ + N L ++ VY L GL+ + K + +AL + Sbjct: 116 VVRKRDGLVMEHPQ-IYDPAARYNEKLHSMQPVYGLTAGLTNNAIIKAVRQALESNSIPE 174 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 +++ ++L +FP A +H P + F AR R ++E L ++L + Sbjct: 175 DFLPEELETAYNFPPYEAALYEMHFPHSKETF---IEARRRFVFEEFLTFVLSL-----R 226 Query: 247 FKKEIGIPINVEGKIAQK-----ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 + KE G + + Q+ L+++P+ T +Q +I ++M+ M R++QGD Sbjct: 227 YVKESGERMKNHFTMKQQPAIDTFLQSLPYELTAAQMRVWNEIQKEMTGDYVMSRLVQGD 286 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV--EIITGNM 359 VGSGKT+VA + + + G Q +MAP +LA+QHYE I ++ + + E++TG+M Sbjct: 287 VGSGKTIVAFLGLLLSGLNGYQGALMAPTEVLARQHYEKISGMLEHYGLPLKAELLTGSM 346 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +R+A RI G + IIIGTHAL Q+ + Y L LVI DEQHRFGV+QR +L K Sbjct: 347 TAKQKREAYVRIESGSSSIIIGTHALIQEKVNYRNLALVITDEQHRFGVRQREQLAGKGL 406 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 PH+L+M+ATPIPRTL + GD+DIS I E P R PIK ++ + ++ Sbjct: 407 TPHILVMSATPIPRTLGIILYGDLDISVINELPMNRLPIKNCVVDTGYRPKAYAFIRQQT 466 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSF 537 G++ Y ICP +EE + + +V + L E SI + +HG+M + +K+ +M +F Sbjct: 467 ELGRQCYVICPMVEESENLDAENVTDYSQMLQEILGPSIRVGYLHGKMKEKEKDEIMTAF 526 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 ++L++TTV+EVGIDV +A++I+IENAE FGLAQLHQLRGRVGRG+ S CI + Sbjct: 527 GRNEIQVLVSTTVVEVGIDVPNATVIMIENAERFGLAQLHQLRGRVGRGKYQSYCIFM-T 585 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 SK + RL +L ++ DGF IA EDL+ R G++ GI+QSG+ F IA +LL+ Sbjct: 586 ASRSKETKERLEILNHSNDGFYIANEDLRLRGPGDLFGIRQSGVLDFKIADVFQDAALLQ 645 Query: 658 IARKDAKHILTQDPDLT 674 A A+ +L +DPDL+ Sbjct: 646 EANAAAERLLLEDPDLS 662 >gi|227548103|ref|ZP_03978152.1| possible DNA helicase RecG [Corynebacterium lipophiloflavum DSM 44291] gi|227079829|gb|EEI17792.1| possible DNA helicase RecG [Corynebacterium lipophiloflavum DSM 44291] Length = 700 Score = 360 bits (923), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 229/675 (33%), Positives = 365/675 (54%), Gaps = 53/675 (7%) Query: 30 IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP 89 I +CG DLL ++P ++ ++ E ++I G + + + Sbjct: 28 IESCG--------DLLRHYPRKYLHYGAGSELEGTREGDTISIIGRVIDTHFIPREGKPI 79 Query: 90 YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS- 148 YKI ++DG I FF + M EG+++ +TGK+ ++ + HP ++ + Sbjct: 80 YKITVDDGRYRIGATFFGSRFAM--RALTEGKRVMLTGKLSFFRSAPQLQHPDFVLLDGP 137 Query: 149 --------QDVNFPLIEAVYS-------LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193 Q +F +E + S P V + I+ + L LP E Sbjct: 138 TQATGALKQLSHFGDLEEILSGREWLPLYPATSKVSTWT-IMGAVHAVLKTLPPVEEPLG 196 Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ----FKK 249 + S+ +A IH P A AR RL Y+E A IAL++ ++ + Sbjct: 197 FTPIGYSSLNKAIREIHEPGPAG----PDAARRRLKYEE--ASGIALVMAVRRADRLLED 250 Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309 +P V G ++L N+PF T Q+ + DI DMS+ M R+LQG+VGSGKT+V Sbjct: 251 ATALP-PVRGGQFDQLLGNLPFPLTDGQKQVLADITADMSRPRPMSRLLQGEVGSGKTIV 309 Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII--TGNMPQAHRRKA 367 +L+AM AV+ G Q ++AP +L QH +++ + ++ TG+M A R++A Sbjct: 310 SLLAMLQAVDNGSQCALLAPTEVLTMQHARSLQETALRAGLTTSVVALTGSMTAAQRQEA 369 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA--TAPHVLL 425 L I GQA I++GTHAL Q+S+++++L LV+VDEQHRFGV+QR L K + PHVL+ Sbjct: 370 LLNIVSGQADIVVGTHALIQESVEFFRLGLVVVDEQHRFGVEQRDALRAKGGDSPPHVLV 429 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEG 482 MTATPIPRT+ +T GD++IS + E P GRKPI++ ++P + ++ E+++ G Sbjct: 430 MTATPIPRTMAITVFGDLEISTLRELPGGRKPIQSSVVPQFKSAWVERGWEKIREEAQAG 489 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542 ++AY +CP+I+ + S E + ++HGRM DK++VM F G Sbjct: 490 RQAYIVCPRIDG---DGGVLITAAMLSATEFADLDVGVLHGRMKGEDKDAVMKDFAAGAI 546 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 +L++TTVIEVG+DV +A+++++ +EHFG++QLHQLRGRVGRG + S C L+H + Sbjct: 547 DVLVSTTVIEVGVDVPNATVMMVRESEHFGVSQLHQLRGRVGRGGKQSLC--LFHTLADE 604 Query: 603 NS--YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIA 659 +S + R+ + T DGF +AE DL+ R+EG+ILG+ QSG + L + D +++ A Sbjct: 605 DSQAFERVCQVAATADGFALAELDLRTRQEGDILGVNQSGSHRTLRLINLVDDFDIVQRA 664 Query: 660 RKDAKHILTQDPDLT 674 DA+ + Q P L Sbjct: 665 YDDAERFVEQHPQLA 679 >gi|260591802|ref|ZP_05857260.1| ATP-dependent DNA helicase RecG [Prevotella veroralis F0319] gi|260536086|gb|EEX18703.1| ATP-dependent DNA helicase RecG [Prevotella veroralis F0319] Length = 698 Score = 360 bits (923), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 228/667 (34%), Positives = 376/667 (56%), Gaps = 22/667 (3%) Query: 18 GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76 GVG + LSK + + DLL Y+P ++DR +SE+S + V + I Sbjct: 13 GVGPRRKEILSKELGI-----LTYRDLLEYYPYKYVDRTKVYLLSELSADMPFVQVKCKI 67 Query: 77 SQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 + F++ KRR + DG G I + ++ T+ + + ++ + GK R Sbjct: 68 LSYEEFEVGKRRKRIVAHATDGHG-ICDIVWFNGTKYIYQNYQINKEYIIFGKPTYYNGR 126 Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLP-----TGLSVDLFKKIIVEALSRLPV-LPEWI 189 HP + +N ++ Y G++ +K+ +S+L L E + Sbjct: 127 FQFSHPDIDDASQLQLNDMGMQPFYITTEKMKKAGITSRAMEKLTKTLISKLTTPLEETL 186 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249 + + S A IH P+ D T AR RL ++EL Q+ +L ++ Sbjct: 187 PPYITTRLHLISHDAAMRKIHYPKSVDD---TQRARIRLKFEELFYVQLNILRYASDHRR 243 Query: 250 EI-GIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 + G N + + N+PF T +Q+ + +I DM +M R+LQGDVGSGKT Sbjct: 244 KYRGYIFNRIGAQFNWFYTHNLPFELTGAQKRVMHEIRADMMSGKQMNRLLQGDVGSGKT 303 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 LVAL++M A++ G QA +MAP ILA+QH + IK++ + + +E++TG + R++ Sbjct: 304 LVALMSMLIAIDNGYQACMMAPTEILAEQHLQTIKEFLKGMNLRIELLTGIVKGKKRKEV 363 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLM 426 L + G +I++GTHA+ +D +Q+ L + +VDEQHRFGV QR KL K+ PH+L+M Sbjct: 364 LAGLVDGSINIVVGTHAIIEDKVQFLNLGMAVVDEQHRFGVAQRAKLWSKSENPPHILVM 423 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486 TATPIPRTL +T GD+D+S I E P GRKPI+T+ +++ + + ++ ++ G++ Y Sbjct: 424 TATPIPRTLAMTIYGDLDVSIIDELPPGRKPIQTIHKYDDQMTSLYQGIRQQITLGRQVY 483 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545 + P I+E + + +++ + + ++ E F ++ IHG+M D +KE M F +G ++L Sbjct: 484 IVYPLIKESERIDLKNLEDGYAAMCEIFPEFKLSKIHGKMKDKEKEVEMQKFVSGETQIL 543 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 +ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+ + L+K + Sbjct: 544 VATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQSYCILVTNHKLTKETS 603 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAK 664 R+ ++ T DGF IAE DLK R G++ G +QSG+ L IA ++++AR++A+ Sbjct: 604 KRIDIMCETNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQIVQMAREEAQ 663 Query: 665 HILTQDP 671 ++ DP Sbjct: 664 KVIDNDP 670 >gi|302332831|gb|ADL23024.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus JKD6159] Length = 686 Score = 359 bits (922), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 216/636 (33%), Positives = 358/636 (56%), Gaps = 24/636 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DL+ Y P+ + D +++ ++ VTI G + R K+ ++ I Sbjct: 37 DLVLYLPTRYEDNTV-IDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIA 95 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--------DVNFP 154 + + LK + ITV GK ++K I + F NSQ DV Sbjct: 96 VKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEIT---GNRFFFNSQGTQNQENADVQ-- 150 Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 +E VY + G+ + I +AL+ + + EW+ +L +K ++ N +H+P+ Sbjct: 151 -LEPVYRIKEGIKQKQIRDQIRQALNDVTI-HEWLTDELREKYKLETLDFTLNTLHHPKS 208 Query: 215 AKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 +D AR A+ EL ++ + L R + + I I+ + + + +PF Sbjct: 209 KEDL---LRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDLDQVKSFIDRLPFEL 265 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T++Q+S++ +I +D+ RM R+LQGDVGSGKT+VA I M A AG Q+ +M P IL Sbjct: 266 TEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEIL 325 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QH E + ++ + V ++TG++ R+ LE++ +G +IGTHAL QD + ++ Sbjct: 326 AEQHAESLIALFGDS-MNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFH 384 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 + LVI DEQHRFGV QR L +K +VL MTATPIPRTL ++ G++D+S I + P Sbjct: 385 NVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPK 444 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHE 512 GRKPI T + D+V+ ++ L +G++AY ICP IE + + ++VV + SL + Sbjct: 445 GRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQ 504 Query: 513 HF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 ++ S + ++HG++S +K+ VM F N +L++TTV+EVG++V +A+ ++I +A+ F Sbjct: 505 YYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRF 564 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631 GL+ LHQLRGRVGR ++ S C+L+ P ++ R++++ T DGF ++E DL+ R G Sbjct: 565 GLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPG 623 Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 + G+KQSG+P FL+A +LE+AR +A ++ Sbjct: 624 DFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELI 659 >gi|227513464|ref|ZP_03943513.1| DNA helicase RecG [Lactobacillus buchneri ATCC 11577] gi|227524607|ref|ZP_03954656.1| DNA helicase RecG [Lactobacillus hilgardii ATCC 8290] gi|227083337|gb|EEI18649.1| DNA helicase RecG [Lactobacillus buchneri ATCC 11577] gi|227088282|gb|EEI23594.1| DNA helicase RecG [Lactobacillus hilgardii ATCC 8290] Length = 727 Score = 359 bits (922), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 237/680 (34%), Positives = 369/680 (54%), Gaps = 45/680 (6%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64 L L ++ +GVG K + L+K+ IN N DLL Y P + D + + I Sbjct: 52 LTSLNDSVAVLKGVGTKRLVALNKLGINTIN-------DLLTYFPRRYDDLSIKDLSNAI 104 Query: 65 SEERIVTITGYI---SQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 ++ VT+ G + + F +K R +++ +ND T+ FF + LK Sbjct: 105 DGQK-VTVKGMVIAPPTLTYFGRKKSRLVFRLKINDNI--YTVSFFNQ--PWLKREVNSN 159 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 +I V G + +N+I I + +F +++Y + K +I A Sbjct: 160 DEIIVFGTYNRSRNQI---QGMKILTDQSSNSF---DSIYPASKEVKQATIKSLIKMAYD 213 Query: 181 RLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 L I L K S + IH P SP + A+ + Sbjct: 214 MYHTQLTNVIPDKLRAKYRLESFPDTIRNIHFPE--------SPKAAQRAFRTAKFMEFF 265 Query: 240 LLLMRKQF------KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 L M+ Q K + I+ + + +K +++PF T +Q+ ++IL D+++ + Sbjct: 266 LFAMKVQILRESHRKTDPHAQIHYQQSLLEKFQKSLPFDLTPAQQKVAREILADLNRPIQ 325 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R+LQGDVGSGKT+VA +A+ A + A QA IMAP ILA+QH K + + Sbjct: 326 MNRLLQGDVGSGKTVVAAMAILATISAHKQAAIMAPTEILAEQHANNFAKMFDGLDVNIA 385 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++TG+ A RR L I G+ +I+GTHALFQ+ +QY L L ++DEQHRFGV QR Sbjct: 386 LLTGDTSAAARRAMLPSIQSGEVDLIVGTHALFQNDVQYDNLGLAVIDEQHRFGVNQRQA 445 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 L QK T+ ++L MTATPIPRTL +T GD+D+S I + P+GRKPIKT I + + I Sbjct: 446 LRQKGTSTNMLAMTATPIPRTLAITMYGDMDVSIINQLPSGRKPIKTTWITSAKTNSAIR 505 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVV---ERFNSLHE-HFTSSIAIIHGRMSDID 529 +K L G + Y + P IEE + + ++ V ERF ++ E F + ++HG+MS+ + Sbjct: 506 FVKKQLDNGNQVYVVTPLIEESEAVDMKNAVAIFERFKTIFEPQF--KVGLLHGQMSNQE 563 Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589 K+ M SFKN ++L+ATTVIEVG+DV +A+ ++I +A+HFGLAQLHQLRGRVGRG Sbjct: 564 KDDTMVSFKNNQFQVLVATTVIEVGVDVANANTMLIFDADHFGLAQLHQLRGRVGRGSTQ 623 Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649 S C+L+ P ++ R+ + ++ +GF ++++DL+ R +G+I G KQSGMP F +A P Sbjct: 624 SYCVLIADPK-NEVGKERMKAVASSTNGFFLSQKDLELRGQGDITGAKQSGMPDFKVADP 682 Query: 650 ELHDSLLEIARKDAKHILTQ 669 ++L +A ++A++I + Sbjct: 683 VGDLNILTVANQEAQNITAE 702 >gi|227544370|ref|ZP_03974419.1| DNA helicase RecG [Lactobacillus reuteri CF48-3A] gi|300909769|ref|ZP_07127230.1| DNA helicase RecG [Lactobacillus reuteri SD2112] gi|227185633|gb|EEI65704.1| DNA helicase RecG [Lactobacillus reuteri CF48-3A] gi|300893634|gb|EFK86993.1| DNA helicase RecG [Lactobacillus reuteri SD2112] Length = 686 Score = 359 bits (922), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 231/667 (34%), Positives = 367/667 (55%), Gaps = 22/667 (3%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP-KISEI 64 L L ++ +GVG K ++ + DLL Y+P+ + D + P I Sbjct: 9 LRSLTDSVANLKGVGPK------RVADLATLGIDTIEDLLTYYPTRYND--FTPTDIESA 60 Query: 65 SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKI 123 +++ +T+ G + R ++ G E+ + F+ + + K + +++ Sbjct: 61 KDKQKITLQGVVVSEPLLVRYGYRRNRLTFRMQVGNEVVIATFFNQPYIKKQIEL-NQQV 119 Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183 TV GK + ++ + + D N AVY++ + ++ + I +A Sbjct: 120 TVMGKWDASRRQV--TGNKLLKEKADDRNE--FGAVYAVNKHIRQNVLQSFIRQAYEEYA 175 Query: 184 -VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 ++P ++ + + Q+ + IH P+ AR AY+E Q+ L Sbjct: 176 NIIPTYLPETIRQRYRLMDRRQMIREIHFPQTQA---TAKAARRTAAYEEFFLFQLRLQA 232 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R+ ++E G I ++ + +PF T +Q+ + +I +DM Q +M R+LQGDV Sbjct: 233 IRRAHRQEDGERILYHNDELKEFIGGLPFELTDAQKRVVNEICRDMRQPYQMNRLLQGDV 292 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKT+VA IA+ AA+ AG QA +MAP ILA QH E + K + T + V ++TG++ Sbjct: 293 GSGKTIVAAIAIYAAITAGYQAALMAPTEILAGQHAEKLAKIFEGTHVQVALLTGSLTAK 352 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 R+ L + G ++I+GTHAL QD ++Y L LVI DEQHRFGV QR +L +K P Sbjct: 353 QHRELLTAMKRGDVNLIVGTHALIQDGVEYANLGLVITDEQHRFGVNQRQQLREKGEHPD 412 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 VL MTATPIPRTL +T+ G++D+S I + PAGRKPI+T + N+ I L+ L +G Sbjct: 413 VLAMTATPIPRTLAITNYGEMDVSIIDQLPAGRKPIQTKWLQSNQHAAAIHFLREQLKQG 472 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNG 540 +AY + P IEE + ++ + +N L + + ++HGRM +K+ M FK+G Sbjct: 473 AQAYVVSPLIEESAALDVQNATDLYNQLSADLEPAYKVGLLHGRMGTEEKDEAMRQFKSG 532 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L+ATTVIEVG+D +A++++I +A+ FGLAQLHQLRGRVGRG S C+L+ P Sbjct: 533 ELQVLVATTVIEVGVDNPNATVMVIYDADRFGLAQLHQLRGRVGRGSRQSYCLLIADPKT 592 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + R+ + T+DGF IAE+DLK R G++LG KQSGMP+F + P +L+IAR Sbjct: 593 DEGK-ARMKTMVATDDGFKIAEQDLKLRGSGDVLGKKQSGMPEFKVGDPVADLKMLQIAR 651 Query: 661 KDAKHIL 667 DA ++L Sbjct: 652 ADAGNLL 658 >gi|21282839|ref|NP_645927.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus MW2] gi|49486066|ref|YP_043287.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus MSSA476] gi|300912209|ref|ZP_07129652.1| DNA helicase RecG [Staphylococcus aureus subsp. aureus TCH70] gi|38605354|sp|Q8NX11|RECG_STAAW RecName: Full=ATP-dependent DNA helicase recG gi|81649427|sp|Q6G9Y6|RECG_STAAS RecName: Full=ATP-dependent DNA helicase recG gi|21204278|dbj|BAB94975.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus MW2] gi|49244509|emb|CAG42938.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus MSSA476] gi|300886455|gb|EFK81657.1| DNA helicase RecG [Staphylococcus aureus subsp. aureus TCH70] Length = 686 Score = 359 bits (922), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 216/636 (33%), Positives = 358/636 (56%), Gaps = 24/636 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DL+ Y P+ + D +++ ++ VTI G + R K+ ++ I Sbjct: 37 DLVLYLPTRYEDNTV-IDLNQAEDQSNVTIEGQVYTAPVVAFFGRNNSKLTVHLMVNNIA 95 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--------DVNFP 154 + + LK + ITV GK ++K I + +F NSQ DV Sbjct: 96 VKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEIT---GNRVFFNSQGTQTQENADVQ-- 150 Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 +E VY + G+ + I +AL+ + + EW+ +L +K ++ N +H+P+ Sbjct: 151 -LEPVYRIKEGIKQKQIRDQIRQALNDVTI-HEWLTDELREKYKLETLDFTLNTLHHPKS 208 Query: 215 AKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 +D AR A+ EL ++ + L R + + I I+ + + +PF Sbjct: 209 KEDL---LRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYGLDQVKSFIDRLPFEL 265 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T++Q+S++ +I +D+ RM R+LQGDVGSGKT+VA I M A AG Q+ +M P IL Sbjct: 266 TEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEIL 325 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QH E + ++ + V ++TG++ R+ LE++ +G +IGTHAL QD + ++ Sbjct: 326 AEQHAESLMALFGDS-MNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFH 384 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 + LVI DEQHRFGV QR L +K +VL MTATPIPRTL ++ G++D+S I + P Sbjct: 385 NVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPK 444 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHE 512 GRKPI T + D+V+ ++ L +G++AY ICP IE + + ++VV + SL + Sbjct: 445 GRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQ 504 Query: 513 HF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 ++ S + ++HG++S +K+ VM F N +L++TTV+EVG++V +A+ ++I +A+ F Sbjct: 505 YYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRF 564 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631 GL+ LHQLRGRVGR ++ S C+L+ P ++ R++++ T DGF ++E DL+ R G Sbjct: 565 GLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPG 623 Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 + G+KQSG+P FL+A +LE+AR +A ++ Sbjct: 624 DFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELI 659 >gi|325957104|ref|YP_004292516.1| ATP-dependent DNA helicase RecG [Lactobacillus acidophilus 30SC] gi|325333669|gb|ADZ07577.1| ATP-dependent DNA helicase RecG [Lactobacillus acidophilus 30SC] Length = 678 Score = 359 bits (922), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 224/685 (32%), Positives = 377/685 (55%), Gaps = 26/685 (3%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 N LFAP++ +GVG K + + G+ DLLFY P + + P + +I + Sbjct: 4 NALFAPVTDLKGVGTKTA------ADLGSLGIYSIYDLLFYFPFRYDELQTLP-LDQIMD 56 Query: 67 ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122 + V + G ++ S F +K R +KI ++ +I ++ F+ + LK+ G++ Sbjct: 57 GQKVMLKGIVATEPFVSGFGYKKSRLSFKIRIDH---DIVMVNFFNQP-WLKSKIEIGQE 112 Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SR 181 + + GK + + + F +++ N + +Y + + +I A+ S Sbjct: 113 VAIYGKYNVARQSL----SAFKFVAAKE-NDSGMAPIYPVNRHVKQKKLINLINLAIDSF 167 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 L + + + K++++K E +H+P+ D E A+ + E ++ L Sbjct: 168 LDQVQDIVPKEIMEKYRLLHDQEIIQKMHHPKNGHDAEL---AKRSAIFREFFIFELQLA 224 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L+ K+ G P + K + +++PF + Q+ + +I DM +M R+LQGD Sbjct: 225 LLANHDGKQQGYPKKYDLKEIANLTKSLPFELSDDQKKVVNEIFADMHSDGQMRRLLQGD 284 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VA+ A+ AA+ AG QA +M P ILA QH++ I + + + V ++TGN Sbjct: 285 VGSGKTVVAVYAIFAAISAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTKT 344 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 RR+ + G + +IGTHAL Q ++ + KL LVI+DEQHRFGV QR L K P Sbjct: 345 LERREIYRELTDGTINAVIGTHALIQKNVIFKKLGLVIIDEQHRFGVGQRQALINKGDNP 404 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 +L MTATPIPRTL LT GD+ +S+I PAGRKPI + +++ +V + + L + Sbjct: 405 DILAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISAWKTSSQMKDVYKLMYEQLDQ 464 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSL-HEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540 G + Y + P I E + + ++ E L H+ ++ ++HG+M K+ +M +F +G Sbjct: 465 GFQIYAVTPLITESETLDLKNAEELHEKLSHDFPDQNVVLLHGQMPGAKKDEIMSAFASG 524 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+ S CI + P Sbjct: 525 EINILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGQTQSYCIFIADPK- 583 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + + R+ ++ T +GF +AEEDLK R EG++ G QSG+P+F + + + L +A+ Sbjct: 584 TDSGKARMKIIAATNNGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYNTLVVAQ 643 Query: 661 KDAKHILTQDPDLTSVRGQSIRILL 685 K A+ ++ DP+LTS S++ +L Sbjct: 644 KVARELVKADPELTSPEHNSLKQVL 668 >gi|167904186|ref|ZP_02491391.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei NCTC 13177] Length = 443 Score = 359 bits (922), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 188/417 (45%), Positives = 267/417 (64%), Gaps = 10/417 (2%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 +PF+ T +QE + +I D++Q + M R+LQGDVGSGKT+VA +A A A++AG QA +MA Sbjct: 11 LPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQAALMA 70 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P ILA+QH ++ + + + V + G++ +R ALE A G A ++IGTHA+ QD Sbjct: 71 PTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTHAMIQD 130 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLVLTS 439 ++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRTL +T Sbjct: 131 TVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRTLAMTY 190 Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499 D+D+S I E P GR PI T ++ R DEVI R++ G++ YW+CP IEE + Sbjct: 191 YADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEESETLQ 250 Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 ++ VE + +L + ++HGR++ ++K +VMD+F +LL+ATTVIEVG+DV Sbjct: 251 LQTAVETYETLAAALPELKVGLVHGRLAPVEKAAVMDAFSRNDVQLLVATTVIEVGVDVP 310 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618 +AS+++IE+AE FGLAQLHQLRGRVGRG S C+L+Y PLS RL ++ T DGF Sbjct: 311 NASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRETTDGF 370 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 IA DL+ R GE LG +QSG A E L+E AR A ++ P++ + Sbjct: 371 EIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEVVA 427 >gi|325567339|ref|ZP_08144006.1| DNA helicase RecG [Enterococcus casseliflavus ATCC 12755] gi|325158772|gb|EGC70918.1| DNA helicase RecG [Enterococcus casseliflavus ATCC 12755] Length = 695 Score = 359 bits (922), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 229/672 (34%), Positives = 384/672 (57%), Gaps = 33/672 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL+ +GVG+K + L+ + ET DLL Y+P + D R +++EI ++ Sbjct: 21 LNQPLTVLKGVGEKRAQDLASL-----GIET-IEDLLKYYPFRYEDIQER-QLAEIQDQE 73 Query: 69 IVTITGYISQH---SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 VTI G + + F +K R ++ D ++ + F+ + LK+ +I V Sbjct: 74 KVTIKGIVVSPPVVNRFGYKKSRLQFRMMQDH--DVFNVSFFNQP-YLKDKVEVSEEIAV 130 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLP- 183 GK + + + I + +F P+ + + ++L K+ ++ ++ Sbjct: 131 YGKWDAKRKGLTGMK---ILGSKSAEDFAPIYHVNKVVRQSVLIELIKQAFLDFGDQITE 187 Query: 184 VLP-EWIEK-DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 +LP IEK LL +KS A +H P KD + + A+ R+ ++E Q+ + Sbjct: 188 ILPLSLIEKYRLLDRKS------AMFAMHFP---KDPQESHQAKRRVIFEEFFLFQMQIQ 238 Query: 242 LMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 ++K K E G+ I+ + + ++ R +PF T +Q+ +I D+ M R+LQG Sbjct: 239 GLKKSEKAEKNGLAIDYDVQRLKEFTRKLPFELTNAQKRVTNEICHDLKSPQHMQRLLQG 298 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA I + A + AG Q +M P ILAQQH E + + ++ ++TG+ Sbjct: 299 DVGSGKTVVAAITLYATMTAGFQGALMVPTEILAQQHLESLNQLFDPLEVTTALLTGSTK 358 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 RR LE++A G+ II+GTHAL Q+ + + L LVI DEQHRFGV QR L +K Sbjct: 359 PKERRVILEQLAAGEIDIIVGTHALIQEGVDFAHLGLVITDEQHRFGVNQRKVLREKGYL 418 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 P VL MTATPIPRTL +T+ G++D+S I E PAGR P++T + + + ++E + L+ Sbjct: 419 PDVLFMTATPIPRTLAITAYGEMDVSVIDEMPAGRIPVETRWVRPPQFESILEWAQKELA 478 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFK 538 +G + Y ICP IEE + + ++ E + L +F T + ++HG+M + +K+++M++FK Sbjct: 479 QGHQMYVICPLIEESEMLDVKNATEIYEQLQSYFSPTYQVGMLHGKMKNQEKDTIMEAFK 538 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P Sbjct: 539 ENQLQILVSTTVIEVGVNVPNATVMLIIDADRFGLAQLHQLRGRVGRGADASYCILIANP 598 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 ++ R+ ++ T +GF+++E+DL+ R GE+ G +QSG+P+F A +LE+ Sbjct: 599 K-NETGVERMKIMTETTNGFVVSEKDLQLRGPGEVFGNRQSGLPEFAAADLVADAHILEV 657 Query: 659 ARKDAKHILTQD 670 A+ +A + ++ Sbjct: 658 AQVEATQLWQKN 669 >gi|297208129|ref|ZP_06924560.1| DNA helicase RecG [Staphylococcus aureus subsp. aureus ATCC 51811] gi|296887372|gb|EFH26274.1| DNA helicase RecG [Staphylococcus aureus subsp. aureus ATCC 51811] Length = 686 Score = 359 bits (922), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 216/636 (33%), Positives = 358/636 (56%), Gaps = 24/636 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DL+ Y P+ + D +++ ++ VTI G + R K+ ++ I Sbjct: 37 DLVLYLPTRYEDNTV-IDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIA 95 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--------DVNFP 154 + + LK + ITV GK ++K I + +F NSQ DV Sbjct: 96 VKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEIT---GNRVFFNSQGTQTQENADVQ-- 150 Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 +E VY + G+ + I +AL+ + + EW+ +L +K ++ N +H+P+ Sbjct: 151 -LEPVYRIKEGIKQKQIRDQIRQALNDVTI-HEWLTDELREKYKLETLDFTLNTLHHPKS 208 Query: 215 AKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 +D AR A+ EL ++ + L R + + I I+ + + +PF Sbjct: 209 KEDL---LRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYGLDQVKSFIDRLPFEL 265 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T++Q+S++ +I +D+ RM R+LQGDVGSGKT+VA I M A AG Q+ +M P IL Sbjct: 266 TEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEIL 325 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QH E + ++ + V ++TG++ R+ LE++ +G +IGTHAL QD + ++ Sbjct: 326 AEQHAESLMALFGDS-MNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFH 384 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 + LVI DEQHRFGV QR L +K +VL MTATPIPRTL ++ G++D+S I + P Sbjct: 385 NVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPK 444 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHE 512 GRKPI T + D+V+ ++ L +G++AY ICP IE + + ++VV + SL + Sbjct: 445 GRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQ 504 Query: 513 HF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 ++ S + ++HG++S +K+ VM F N +L++TTV+EVG++V +A+ ++I +A+ F Sbjct: 505 YYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRF 564 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631 GL+ LHQLRGRVGR ++ S C+L+ P ++ R++++ T DGF ++E DL+ R G Sbjct: 565 GLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPG 623 Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 + G+KQSG+P FL+A +LE+AR +A ++ Sbjct: 624 DFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELI 659 >gi|282916476|ref|ZP_06324238.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus D139] gi|283770288|ref|ZP_06343180.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp. aureus H19] gi|282319916|gb|EFB50264.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus D139] gi|283460435|gb|EFC07525.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp. aureus H19] Length = 686 Score = 359 bits (922), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 216/636 (33%), Positives = 358/636 (56%), Gaps = 24/636 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DL+ Y P+ + D +++ ++ VTI G + R K+ ++ I Sbjct: 37 DLVLYLPTRYEDNTV-IDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIA 95 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--------DVNFP 154 + + LK + ITV GK ++K I + +F NSQ DV Sbjct: 96 VKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEIT---GNRVFFNSQGTQTQENADVQ-- 150 Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 +E VY + G+ + I +AL+ + + EW+ +L +K ++ N +H+P+ Sbjct: 151 -LEPVYRIKEGIKQKQIRDQIRQALNDVTI-HEWLTDELREKYKLETLDFTLNTLHHPKS 208 Query: 215 AKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 +D AR A+ EL ++ + L R + + I I+ + + + +PF Sbjct: 209 KEDL---LRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDLDQVKSFIDRLPFEL 265 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T++Q+S++ +I +D+ RM R+LQGDVGSGKT+VA I M A AG Q+ +M P IL Sbjct: 266 TEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEIL 325 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QH E + ++ + V ++TG++ R+ LE++ +G +IGTHAL QD + + Sbjct: 326 AEQHAESLIALFGDS-MNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFN 384 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 + LVI DEQHRFGV QR L +K +VL MTATPIPRTL ++ G++D+S I + P Sbjct: 385 NVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPK 444 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHE 512 GRKPI T + D+V+ ++ L +G++AY ICP IE + + ++VV + SL + Sbjct: 445 GRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQ 504 Query: 513 HF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 ++ S + ++HG++S +K+ VM F N +L++TTV+EVG++V +A+ ++I +A+ F Sbjct: 505 YYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRF 564 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631 GL+ LHQLRGRVGR ++ S C+L+ P ++ R++++ T DGF ++E DL+ R G Sbjct: 565 GLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPG 623 Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 + G+KQSG+P FL+A +LE+AR +A ++ Sbjct: 624 DFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELI 659 >gi|58337584|ref|YP_194169.1| ATP-dependent DNA helicase RecG [Lactobacillus acidophilus NCFM] gi|58254901|gb|AAV43138.1| ATP-dependent DNA helicase [Lactobacillus acidophilus NCFM] Length = 678 Score = 359 bits (922), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 225/676 (33%), Positives = 368/676 (54%), Gaps = 32/676 (4%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 N LFAP++ +GVG K + + G+ DLLFY P + + P + +I + Sbjct: 4 NALFAPVTDLKGVGTKTA------ADLGSLGIYSIYDLLFYFPFRYDELQTLP-LDQIMD 56 Query: 67 ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122 + V + G ++ S F +K R +K+ ++ E+ ++ F+ + LKN G++ Sbjct: 57 GQKVVLKGIVATEPFVSRFGYKKSRLSFKMRIDH---EVIMVNFFNQP-WLKNKIEIGQE 112 Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSR 181 I + GK + + ++ D P+ + V L I E L + Sbjct: 113 IAIYGKYNVARQSLSAFK--FVAAKENDSGMAPIYPVNRHIKQKKLVSLIDLAIEEFLDQ 170 Query: 182 L-PVLPEWIEKD--LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 + ++PE I ++ LL + E +H+P+ + D E + + E ++ Sbjct: 171 VNDIVPEKIRQEYHLLNDR------EIITKMHHPKNSNDAEI---GKRSAIFREFFIFEL 221 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 L L+ K+ ++G + K + +++PF + Q+ + +I D+ N+M R+L Sbjct: 222 QLALLTKKDGNQLGYAKKYDLKEVANLTKSLPFELSDDQKHVVNEIFADLHSSNQMRRLL 281 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKT+VA+ A+ AA+ AG QA +M P ILA QH++ I + + I V ++T N Sbjct: 282 QGDVGSGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPFGIRVALLTSN 341 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 RR+ + G +++IGTHAL Q ++ + KL LVI+DEQHRFGV QR L K Sbjct: 342 TKTLERREIYRELTDGTINVVIGTHALIQKNVIFKKLGLVIIDEQHRFGVGQRQALINKG 401 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 P VL MTATPIPRTL LT GD+ +S+I P+GRKPI + +++ +V +R+ Sbjct: 402 DNPDVLAMTATPIPRTLALTVYGDMTLSEIHHLPSGRKPIISSWKTSSQMKDVYKRMHEQ 461 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSF 537 L +G + Y + P I + + + ++ E L F + ++HG+M + K+ +M +F Sbjct: 462 LDQGFQIYAVTPLITDSETLDLKNAEELHEKLSHDFPDKKVVLLHGQMPGVKKDEIMSAF 521 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 +G +L+ T+VIEVG+DV +A+++II NA+ FGL+QLHQLRGR+GRGE S C+ + Sbjct: 522 ASGEINILVTTSVIEVGVDVANANMMIIYNADRFGLSQLHQLRGRIGRGETQSYCVFIAD 581 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 P + R+ ++ T DGF +AEEDLK R EG++ G QSG+P+F + + + L Sbjct: 582 PR-TDTGKARMKIISATNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYNTLV 640 Query: 658 IARKDAKHILTQDPDL 673 +A+K A+ ++ DPDL Sbjct: 641 VAQKIARKLVNDDPDL 656 >gi|227904224|ref|ZP_04022029.1| ATP-dependent DNA helicase [Lactobacillus acidophilus ATCC 4796] gi|227867872|gb|EEJ75293.1| ATP-dependent DNA helicase [Lactobacillus acidophilus ATCC 4796] Length = 682 Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 225/676 (33%), Positives = 368/676 (54%), Gaps = 32/676 (4%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 N LFAP++ +GVG K + + G+ DLLFY P + + P + +I + Sbjct: 8 NALFAPVTDLKGVGTKTA------ADLGSLGIYSIYDLLFYFPFRYDELQTLP-LDQIMD 60 Query: 67 ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122 + V + G ++ S F +K R +K+ ++ E+ ++ F+ + LKN G++ Sbjct: 61 GQKVVLKGIVATEPFVSRFGYKKSRLSFKMRIDH---EVIMVNFFNQP-WLKNKIEIGQE 116 Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSR 181 I + GK + + ++ D P+ + V L I E L + Sbjct: 117 IAIYGKYNVARQSLSAFK--FVAAKENDSGMAPIYPVNRHIKQKKLVSLIDLAIEEFLDQ 174 Query: 182 L-PVLPEWIEKD--LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 + ++PE I ++ LL + E +H+P+ + D E + + E ++ Sbjct: 175 VNDIVPEKIRQEYHLLNDR------EIITKMHHPKNSNDAEI---GKRSAIFREFFIFEL 225 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 L L+ K+ ++G + K + +++PF + Q+ + +I D+ N+M R+L Sbjct: 226 QLALLTKKDGNQLGYAKKYDLKEVANLTKSLPFELSDDQKHVVNEIFADLHSSNQMRRLL 285 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKT+VA+ A+ AA+ AG QA +M P ILA QH++ I + + I V ++T N Sbjct: 286 QGDVGSGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPFGIRVALLTSN 345 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 RR+ + G +++IGTHAL Q ++ + KL LVI+DEQHRFGV QR L K Sbjct: 346 TKTLERREIYRELTDGTINVVIGTHALIQKNVIFKKLGLVIIDEQHRFGVGQRQALINKG 405 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 P VL MTATPIPRTL LT GD+ +S+I P+GRKPI + +++ +V +R+ Sbjct: 406 DNPDVLAMTATPIPRTLALTVYGDMTLSEIHHLPSGRKPIISSWKTSSQMKDVYKRMHEQ 465 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSF 537 L +G + Y + P I + + + ++ E L F + ++HG+M + K+ +M +F Sbjct: 466 LDQGFQIYAVTPLITDSETLDLKNAEELHEKLSHDFPDKKVVLLHGQMPGVKKDEIMSAF 525 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 +G +L+ T+VIEVG+DV +A+++II NA+ FGL+QLHQLRGR+GRGE S C+ + Sbjct: 526 ASGEINILVTTSVIEVGVDVANANMMIIYNADRFGLSQLHQLRGRIGRGETQSYCVFIAD 585 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 P + R+ ++ T DGF +AEEDLK R EG++ G QSG+P+F + + + L Sbjct: 586 PR-TDTGKARMKIISATNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYNTLV 644 Query: 658 IARKDAKHILTQDPDL 673 +A+K A+ ++ DPDL Sbjct: 645 VAQKIARKLVNDDPDL 660 >gi|196231017|ref|ZP_03129877.1| ATP-dependent DNA helicase RecG [Chthoniobacter flavus Ellin428] gi|196224847|gb|EDY19357.1| ATP-dependent DNA helicase RecG [Chthoniobacter flavus Ellin428] Length = 693 Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 226/666 (33%), Positives = 352/666 (52%), Gaps = 31/666 (4%) Query: 44 LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK-RRPYKILLNDGTGE-- 100 LL + P + DR E V + G + + S +++ ++ + ++L + Sbjct: 23 LLTHFPKRYEDRTRFDHFPTGDSEEPVCVCGIVKKTSLRRIRGWQKMFDVILEEEEAHAL 82 Query: 101 ---ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPL- 155 IT +F ++ + G+++ V GK K+ + +++ HP + I N +V+ L Sbjct: 83 SQPITCRWF--NAHWVEKMIVTGQRLVVYGKPKRSGSSVVLAHPEFEIVENDAEVSLHLN 140 Query: 156 -IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 + ++ GLS + +++I + L + P +E + A +H P Sbjct: 141 RLTPIHRATEGLSPRVMRRLIWDVLEHMEKTP--VESLIPDSLDATPRGWALRQVHFP-- 196 Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274 + E + AR L E Q+ + R + + G V + Q++ +PF T Sbjct: 197 -DNQETLAKARRHLVLTEFFGMQLCVAAKRAEQTSQPGASHFVADTLMQRLHAALPFPLT 255 Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334 +Q+ AI +I D++ M R+L GDVGSGKTLVAL AM AVEAG QA +MAP ILA Sbjct: 256 GAQQRAIGEIRADLAALRPMNRLLHGDVGSGKTLVALSAMLLAVEAGYQAALMAPTQILA 315 Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHR-----RKALERIA---------HGQAHIII 380 +QHY + + + V + TG + A++R+ + HI++ Sbjct: 316 EQHYLNFLRLCEPLGLRVSLRTGARREDSSALPLFENAVQRVPGNDGIDPLPDSEPHILV 375 Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440 GTHAL + + +L L ++DEQH+FGV QR +L + AP VL+MTATPIPRTL +T Sbjct: 376 GTHALLYEGAGFTRLGLAVIDEQHKFGVLQRARLRNQGVAPDVLVMTATPIPRTLTMTLY 435 Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500 GD+D+S + E PA R I T + ++ + ++ L+ L G++AY + P I+E ++ Sbjct: 436 GDLDVSTLDELPAHRGKIVTGVRDAAKLPDAVKFLREHLEAGRQAYVVYPLIDESEKLEA 495 Query: 501 RSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 ++ F E A++HGR++ +K+++M+ F+ G K LIATTVIEVGIDV + Sbjct: 496 KAAATEFAKWQEFLAPMPCALLHGRIAPEEKDAIMEKFRGGETKALIATTVIEVGIDVPN 555 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619 A+I++IENAE FGLAQLHQLRGR+GRG+ S CILL P + +L +L+ T DGF Sbjct: 556 ANIMLIENAERFGLAQLHQLRGRIGRGQHKSYCILLRSPKAEAETAEKLRILEATSDGFE 615 Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679 IAE DLK R G+ILG QSG+P + P L+ +AR A + +DP L Q Sbjct: 616 IAEADLKLRGPGDILGTAQSGLPPLKLGDPLADHELMRLARNAAFLLFERDPQLERPENQ 675 Query: 680 SIRILL 685 R +L Sbjct: 676 RFRRVL 681 >gi|23013788|ref|ZP_00053646.1| COG1200: RecG-like helicase [Magnetospirillum magnetotacticum MS-1] Length = 484 Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 185/464 (39%), Positives = 279/464 (60%), Gaps = 7/464 (1%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 MRP L PLFAP+++ G+G + + +++ + +DLL++ P+ +DR + PK Sbjct: 1 MRPQVLFPLFAPVTSLPGIGPRLAPLYQRLVG------EKVLDLLWHLPAGVVDRRFAPK 54 Query: 61 ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 ++E ++ T+T + H KR PY++ + D TG + L+FF+ + + L+ EG Sbjct: 55 VAEAPHGKVATLTLRVDAHYPSSSPKR-PYRVRMADETGFLHLVFFHGREDWLRKQLPEG 113 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 V+G ++ N I + HP +I + +E VY L GL+ K + A++ Sbjct: 114 EIRVVSGVVEHFNNEIQISHPDHIVRLEEIAQVMAVEPVYGLTAGLTGRAVAKTVAAAVA 173 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 + P LPEW E L ++ +P EA +H+P +PAR RLA+DELLA Q+AL Sbjct: 174 KAPQLPEWQEPHWLVRQGWPGWHEALTAVHHPADEHSALGDTPARRRLAFDELLANQLAL 233 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 ++R Q +K G + +G + K+L +P++ T +Q ++ +I DM+Q RMLR+LQG Sbjct: 234 AMVRAQMRKLKGRSLVGDGSLRAKVLAALPYTLTGAQSRSLAEIDADMAQPMRMLRLLQG 293 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VAL+AM AVE G QA +MAP ILA+QHY I + + V ++TG Sbjct: 294 DVGSGKTIVALLAMLTAVETGAQAAMMAPTEILARQHYAGIAPLAEAAGLRVALLTGRDK 353 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 R L +A G+ HI++GTHALFQ+ + + L L ++DEQHRFGV QRL+L K A Sbjct: 354 GKSREAVLAGLASGEIHILLGTHALFQEDVAFKDLALAVIDEQHRFGVHQRLELAAKGVA 413 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464 +L+MTATPIPRTL+LT+ GD+D S++ EKP GRKPI T ++P Sbjct: 414 VDMLVMTATPIPRTLLLTAYGDMDASRLDEKPPGRKPIDTRVVP 457 >gi|38233726|ref|NP_939493.1| ATP-dependent DNA helicase [Corynebacterium diphtheriae NCTC 13129] gi|38199987|emb|CAE49656.1| ATP-dependent DNA helicase [Corynebacterium diphtheriae] Length = 704 Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 232/668 (34%), Positives = 354/668 (52%), Gaps = 52/668 (7%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEE-RIVTITGYI-SQHSSFQLQKRRPYKILLNDGTGE 100 DLL + P + H +E +EE I+T G I H Y ++++DG Sbjct: 33 DLLQHFPRGYA-AHGTGLAAEAAEEGDIITCVGTIVDTHEHPDRNGYSIYSVVISDGFTR 91 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160 T FF + +K V G + TGK+K +N + HP + + + Sbjct: 92 STATFF--RATWIKKVLTHGAQGIFTGKLKFFRNTPQLQHPDFFLFPEKGKKATGTGGMQ 149 Query: 161 SLPTGLSVDLFKKIIVEALSRLPV------LPEW---------------IEKDL--LQKK 197 +L T +D I+V A+S LPV +P W I L Sbjct: 150 ALSTTGELDDITDILV-AMSYLPVYPAKKAIPTWRILGAVHNILTHTPHIADPLHEFAPH 208 Query: 198 SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN- 256 PS +A IH P + + + R+ YDE L + + L R ++ PI Sbjct: 209 DLPSFDQALRGIHEPDEHGPQHYIT----RIKYDEALTLALVMALRRADTQRRHAYPIPP 264 Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316 + +L ++PF T+ Q + + +I D++Q M R+LQG+VGSGKT+V+L+AM Sbjct: 265 TNDGLRAHMLSHLPFELTEGQHNVLTEISADLAQPTPMSRLLQGEVGSGKTIVSLLAMLQ 324 Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT--QIIVEIITGNMPQAHRRKALERIAHG 374 ++ G Q V++AP +LA QH I + N I V ++TG++P RRKAL I G Sbjct: 325 VIDDGKQCVLLAPTEVLAAQHATSITQQLTNAGININVTLLTGSLPTEQRRKALFNIISG 384 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA---TAPHVLLMTATPI 431 A++IIGTHAL Q+ I+++ L L ++DEQHRFGV+QR L + PHVL+MTATPI Sbjct: 385 DANLIIGTHALIQEGIEFFDLALCVIDEQHRFGVEQRDHLRNQGRDTNTPHVLVMTATPI 444 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP---INRIDEVIERLKVVLSEGKKAYWI 488 PR++ +T+ GD+ +S + + P GR+PI + +I + ER++ + +G + Y + Sbjct: 445 PRSIAMTAFGDLSVSTLKQLPGGRRPIHSYVIDHQHTTWTTRMWERIREEIDKGHQIYIV 504 Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 CP+I++ V E + L ++ IA++HG M DK++ M +F GT +L+ Sbjct: 505 CPKIKDSG-----GVEETTHQLTTGILANYRIAMLHGAMHPEDKDTTMKAFAAGTIDVLV 559 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 ATTVIEVGIDV +A++++I +E+FG++QLHQLRGRVGRG S C + ++ Sbjct: 560 ATTVIEVGIDVPNATVMLIRESENFGVSQLHQLRGRVGRGGNESICFFHTTAQPTTPAHN 619 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKH 665 R++ + T DGF +AE DL R EG ILG +QSG +I+ +HD L+E A DA H Sbjct: 620 RVTAVAATTDGFELAEIDLTYRHEGNILGTQQSGHTNRIIS--FIHDKDLIERANNDATH 677 Query: 666 ILTQDPDL 673 I+T +P L Sbjct: 678 IVTHNPQL 685 >gi|326776332|ref|ZP_08235597.1| ATP-dependent DNA helicase RecG [Streptomyces cf. griseus XylebKG-1] gi|326656665|gb|EGE41511.1| ATP-dependent DNA helicase RecG [Streptomyces cf. griseus XylebKG-1] Length = 735 Score = 358 bits (920), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 225/692 (32%), Positives = 366/692 (52%), Gaps = 76/692 (10%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGE 100 DLL ++P + +R ++++ + VT+ ++ F + + ++ L DG+G Sbjct: 34 DLLHHYPRRYEERGRLTALADLPLDEHVTVVAQVADARILMFNNGRGKRLEVTLTDGSGR 93 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-------- 152 + L+FF GR+ GK+ ++ + HP Y ++ D + Sbjct: 94 LQLVFFGHGVHKPHKELLPGRQAMFAGKVSVFNRKMQLAHPTYQLLDASDADEATEAVDA 153 Query: 153 --------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAE 204 +P + + S +VD +A+ LP L + + F S+ E Sbjct: 154 FAGRLLPIYPACKQLDSWRIAKAVDAVLPSARDAVDPLPA-------SLREGRGFTSLPE 206 Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK 264 A H P+ D E AR RL +DE Q+AL R+++ + +P +A Sbjct: 207 ALLKAHRPQTKADIE---DARARLKWDEAFVLQVAL--ARRRYA-DTQLPAAARRPVADG 260 Query: 265 IL----RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320 +L +PF+ T+ Q+ K+I ++ ++ M R+LQG+VGSGKT+VAL AM A V+A Sbjct: 261 LLDAFDAKLPFTLTEGQQKVSKEIFDGLATEHPMHRLLQGEVGSGKTMVALRAMLAVVDA 320 Query: 321 GGQAVIMAPIGILAQQHYEFIKKY-------------TQNTQIIVEIITGNMPQAHRRKA 367 GGQA ++AP +LAQQH+ I + T+++ ++TG+M A RR+A Sbjct: 321 GGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGSDHGTKVV--LLTGSMGTAARRQA 378 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLM 426 L + G+A I+IGTHAL +D +Q++ L LV+VDEQHRFGV+QR L K PH+L+M Sbjct: 379 LLDLVTGEAGIVIGTHALIEDKVQFHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVM 438 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEG 482 TATPIPRT+ +T GD++ S + + PAGR PI + ++P + ER++ + G Sbjct: 439 TATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAKDKPHFLARAWERVREEVENG 498 Query: 483 KKAYWICPQI------------------EEKKESNFRSVVERFNSLHEHFTSSIAI--IH 522 +AY +CP+I E+ + +V+E + L + + + + +H Sbjct: 499 HQAYVVCPRIGDDAEEEKKGRAKKKAAEEDPDKRPPLAVLEIADELRKGALAGLGVEVLH 558 Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582 GRM +K+ VM F G +L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQLRGR Sbjct: 559 GRMHPDEKDDVMRRFAAGDVHVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGR 618 Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642 VGRG C+L+ + + RLS + T DGF ++ DL+QR+EG++LG QSG+ Sbjct: 619 VGRGSAPGLCLLVSEAHEASPARARLSAVAATLDGFELSRIDLEQRREGDVLGQAQSGVR 678 Query: 643 KFLIAQPELHD-SLLEIARKDAKHILTQDPDL 673 L + D ++ AR++A I+ DP+L Sbjct: 679 SSLRMLTVIDDEEVIAAAREEAVAIVAADPEL 710 >gi|194466496|ref|ZP_03072483.1| ATP-dependent DNA helicase RecG [Lactobacillus reuteri 100-23] gi|194453532|gb|EDX42429.1| ATP-dependent DNA helicase RecG [Lactobacillus reuteri 100-23] Length = 678 Score = 358 bits (920), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 230/667 (34%), Positives = 367/667 (55%), Gaps = 22/667 (3%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP-KISEI 64 + L ++ +GVG K ++ + DLL Y+P+ + D + P I Sbjct: 1 MRSLTDSVANLKGVGPK------RVADLATLGIDTIEDLLTYYPTRYND--FTPTDIESA 52 Query: 65 SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKI 123 +++ +T+ G + R ++ G E+ + F+ + + K + +++ Sbjct: 53 KDKQKITLQGVVVSEPLLVRYGYRRNRLTFRMQVGNEVVIATFFNQPYIKKQIELN-QQV 111 Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183 TV GK + ++ + + D N AVY++ + ++ + I +A Sbjct: 112 TVIGKWDAPRRQV--TGNKLLKEKADDRNE--FGAVYAVNKHIRQNVLQSFIRQAYEEYA 167 Query: 184 -VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 ++P ++ + + Q+ + IH P+ AR AY+E Q+ L Sbjct: 168 NIIPTYLPETIRQRYRLMDRRQMIREIHFPQTQA---TAKAARRTAAYEEFFLFQLRLQA 224 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R+ ++E G I ++ + +PF T +Q+ + +I +DM Q +M R+LQGDV Sbjct: 225 IRRAHRQEDGERILYHNDELKEFIGGLPFELTDAQKRVVNEICRDMRQPYQMNRLLQGDV 284 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKT+VA IA+ AA+ AG QA +MAP ILA QH E + K + T + V ++TG++ Sbjct: 285 GSGKTIVAAIAIYAAITAGYQAALMAPTEILAGQHAEKLAKIFEGTHVQVALLTGSLTAK 344 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 R+ L + G ++I+GTHAL QD ++Y L LVI DEQHRFGV QR +L +K P Sbjct: 345 QHRELLRAMKRGDVNLIVGTHALIQDGVEYANLGLVITDEQHRFGVNQRQQLREKGEHPD 404 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 VL MTATPIPRTL +T+ G++D+S I + PAGRKPI+T + N+ I L+ L +G Sbjct: 405 VLAMTATPIPRTLAITNYGEMDVSIIDQLPAGRKPIQTKWLQSNQHAAAIHFLREQLKQG 464 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNG 540 +AY + P IEE + ++ + +N L + + ++HGRM +K+ M FK+G Sbjct: 465 AQAYVVSPLIEESAALDVQNATDLYNQLSADLEPAYKVGLLHGRMGTEEKDEAMRQFKSG 524 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L+ATTVIEVG+D +A++++I +A+ FGLAQLHQLRGRVGRG S C+L+ P Sbjct: 525 ELQVLVATTVIEVGVDNPNATVMVIYDADRFGLAQLHQLRGRVGRGNRQSYCLLIADPKT 584 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + R+ + T+DGF IAE+DLK R G++LG KQSGMP+F + P +L+IAR Sbjct: 585 DEGK-ARMKTMVATDDGFKIAEQDLKLRGSGDVLGKKQSGMPEFKVGDPVADLKMLQIAR 643 Query: 661 KDAKHIL 667 DA ++L Sbjct: 644 ADAGNLL 650 >gi|254383283|ref|ZP_04998636.1| ATP-dependent DNA helicase [Streptomyces sp. Mg1] gi|194342181|gb|EDX23147.1| ATP-dependent DNA helicase [Streptomyces sp. Mg1] Length = 738 Score = 358 bits (920), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 225/691 (32%), Positives = 371/691 (53%), Gaps = 66/691 (9%) Query: 42 IDLLFYHPSSFIDRHYRPKISEISE--ERIVTITGYISQHS--SFQLQKRRPYKILLNDG 97 +DLL ++P + +R ++E+++ + VT+ ++ +F + + ++ + DG Sbjct: 40 LDLLHHYPRKYAERGELTALTELADQLDEHVTVVAQVADARILTFNGGRGKRLEVTITDG 99 Query: 98 TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVN--- 152 G + L+FF G + GK+ ++ + HP Y + ++ D + Sbjct: 100 NGRLQLVFFGAGVHKPHKELLPGTRAMFAGKVGMFNRKLQLSHPAYEPLGADASDQDAAT 159 Query: 153 ---------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203 +P + S VD E + LP L + + + Sbjct: 160 AFAGRLIPIYPACAKLESWKIAKCVDAVLPSARETVDPLP-------PALREGRGLVPLT 212 Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEGKIA 262 EA IH P D E AR+RL +DE Q+AL R+ + +P V G + Sbjct: 213 EALLKIHRPATKADVE---DARQRLKWDEAFVLQVALARRRRADSQLPAVPRRPVPGGLL 269 Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 +PF+ T+ Q++ K+I D++ ++ M R+LQG+VGSGKT+VAL AM A V+ GG Sbjct: 270 DAFDAKLPFTLTEGQQTVSKEIFDDLATEHPMHRLLQGEVGSGKTMVALRAMLAVVDCGG 329 Query: 323 QAVIMAPIGILAQQHYEFIKKY-------------TQNTQIIVEIITGNMPQAHRRKALE 369 QA ++AP +LAQQH+ I + Q T+++ ++TG+M RRKAL Sbjct: 330 QAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGSDQGTKVV--LLTGSMGMPARRKALL 387 Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTA 428 + G+A I+IGTHAL +D +Q++ L LV+VDEQHRFGV+QR L K PH+L+MTA Sbjct: 388 DLVTGEAGIVIGTHALIEDKVQFHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVMTA 447 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKK 484 TPIPRT+ +T GD++ S + + PAGR PI T ++P + ER++ + +G + Sbjct: 448 TPIPRTVAMTVFGDLETSVLDQLPAGRSPIATHVVPAKDKPHFLARAWERVREEVGKGHQ 507 Query: 485 AYWICPQIEEKKESNFR--------------SVVERFNSLHEHFTS--SIAIIHGRMSDI 528 AY +CP+I +++ ++ + +V+E + L + S+ ++HGRM Sbjct: 508 AYVVCPRIGDEETADPKKKSAEADGDKRPPLAVLEIADELRGGALAGLSVEVLHGRMDPA 567 Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588 DK+ VM F G K+L+ATTVIEVG++V ++++++I +A+ FG++QLHQLRGRVGRG Sbjct: 568 DKDDVMRRFAAGEVKVLVATTVIEVGVNVPNSTVMVIMDADRFGVSQLHQLRGRVGRGSA 627 Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648 C+L+ + + RL+ + T DGF ++ DL+QR+EG++LG QSG+ L Sbjct: 628 PGLCLLVSEMHEASPARARLAAVAATLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRML 687 Query: 649 PELHD-SLLEIARKDAKHILTQDPDLTSVRG 678 + D ++ AR++A ++ DP+L + G Sbjct: 688 AVIDDEEVIAQAREEATRVVADDPELERLPG 718 >gi|229491419|ref|ZP_04385243.1| ATP-dependent DNA helicase RecG [Rhodococcus erythropolis SK121] gi|229321704|gb|EEN87501.1| ATP-dependent DNA helicase RecG [Rhodococcus erythropolis SK121] Length = 753 Score = 358 bits (920), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 238/732 (32%), Positives = 387/732 (52%), Gaps = 88/732 (12%) Query: 17 RGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75 R +GKK + L + A E R + DLL ++P + E E +TI Sbjct: 10 RLLGKKTADALDE------AFEIRTVEDLLRHYPHRYASAGKELAEKEPPEGEHITIIAR 63 Query: 76 ISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 ++ + ++ K RP ++L L + + + FF + +++V G + +G +K Sbjct: 64 VASAAVVKM-KNRPGQMLRVSLATDSQTVDVTFF--NPQKVRHVIKPGVRAMFSGTVKYF 120 Query: 133 KNRIIMVHPHYIFH-----NSQDVNFPLIE----------AVYSLPTGLSVDL--FKKII 175 + + + HP Y+ +D PL A + G +DL F + + Sbjct: 121 RGKWSLTHPSYLILPEPRVGEEDSVVPLASIKGAGDLAGLARANQDPGAELDLSVFDRAL 180 Query: 176 V-------------------EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216 + + L +L + E + + + F + EA +H P + Sbjct: 181 IPLYPATREVESWTIMRCVRQVLDQLDPIEEPLPAETRAEHGFIGLDEALRTVHLPDTKE 240 Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN--VEGKIAQKILRNIPFSPT 274 D E A++RL +DE L+ Q+ +L MR+ E P V G IA + +PF+ T Sbjct: 241 DIER---AQDRLRFDEALSLQL-VLAMRRHDNSERVAPACAPVAGGIADQFEEMLPFTLT 296 Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334 + Q++ ++I D+++ + M R+LQG+VGSGKT+VAL AM V+AG Q ++AP +LA Sbjct: 297 EGQQAVAEEISTDLARPHPMSRLLQGEVGSGKTIVALRAMLQVVDAGYQCALLAPTEVLA 356 Query: 335 QQHYEFIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 QH ++K + + ++TG++P A +R AL G A I+IGTH Sbjct: 357 NQHARSLRKMMGSLAAGGELGSAEHSTRIALLTGSLPVAAKRAALLEAVTGDAGIVIGTH 416 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSL 440 AL QD+++++ L +V+VDEQHRFGV+QR +L +A +PH+L+MTATPIPRT+ +T L Sbjct: 417 ALIQDNVEFFNLGMVVVDEQHRFGVEQRDQLRSRAREGLSPHLLVMTATPIPRTIAMTVL 476 Query: 441 GDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICP------ 490 GD+++S + E P GR PIK+ ++P + +D ER++ +++G++AY +C Sbjct: 477 GDLEVSTLRELPRGRTPIKSSVVPAKQKPQWVDRAWERIREDVADGRQAYVVCSRIGDGE 536 Query: 491 ------QIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542 Q E+K+ +S V+ F L + + ++HGR+ +K+ VM +F G Sbjct: 537 QGAGEDQFTEEKQPETKSAVDVFEELSSGPLADLRVGLLHGRLPSDEKDVVMSAFNVGDI 596 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 +L+ TTV+EVG+DV +A++++I +AE FG++QLHQLRGRVGRG+ CIL+ Sbjct: 597 DVLVCTTVVEVGVDVPNATVMVIVDAERFGVSQLHQLRGRVGRGKHQGLCILVTGSNPGG 656 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARK 661 +Y RLS + T DGF +A+ DL R+EG+ILG QSG L + H +LE AR+ Sbjct: 657 PAYERLSAVAATNDGFELAQLDLATRREGDILGAAQSGTTSNLRLLSLMAHGDILESARE 716 Query: 662 DAKHILTQDPDL 673 A+ I+ DP L Sbjct: 717 FAQGIVDSDPSL 728 >gi|73662852|ref|YP_301633.1| ATP-dependent DNA helicase RecG [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495367|dbj|BAE18688.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 681 Score = 358 bits (920), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 217/660 (32%), Positives = 368/660 (55%), Gaps = 21/660 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS +G+G K L+++ N DL+ Y P+ + D ++E ++ IVT Sbjct: 12 PLSQIKGLGPKRLAVLNEL------NIHTVEDLILYLPTRYEDNTV-IDLNEAEDQAIVT 64 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITL-LFFYRKTEMLKNVFFEGRKITVTGKIK 130 + G + + R K+ ++ +I + F+ + + K + G +TV GK Sbjct: 65 VVGEVYSTPTVAFFGRNKSKLTVHIMVDQIAVKCTFFNQPYLKKKIELHG-TVTVKGKWN 123 Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190 + K I + + +F + Q E VY + G+ + +I + L ++ + EW+ Sbjct: 124 RAKQEI---NGNRMFFSQQMDESGQYEPVYRIKEGIKQKPLRDMIRQVLDQVTI-QEWLS 179 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKK 249 +DL +K ++ + +H A D AR A+ EL ++ + L R + Sbjct: 180 EDLRKKYKLETLEDTIKALHF---ATDKASLLKARRTYAFTELFMFELRMQWLNRLEKTS 236 Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309 + I ++ + + + + ++PF T +Q+ ++ +I +D+ RM R+LQGDVGSGKT+V Sbjct: 237 DEAIDVDYDINLVKHFIDSLPFELTDAQKHSVNEIFRDLKAPIRMHRLLQGDVGSGKTVV 296 Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369 A I M A AG Q+ +M P ILA+QH E + + ++ V ++TG++ R+ LE Sbjct: 297 AAICMYALKTAGYQSALMVPTEILAEQHAESLVDLFGD-RMNVALLTGSVKGKKRKLLLE 355 Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429 ++ + + IIGTHAL QD +++ + LVI DEQHRFGV QR L +K +VL MTAT Sbjct: 356 QLNNNEIDCIIGTHALIQDDVKFNNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTAT 415 Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489 PIPRTL ++ G++D+S I + P GRKPI T + V+ ++ L +G++AY IC Sbjct: 416 PIPRTLAISVFGEMDVSSIKQLPKGRKPIITSWSKHEAYESVLNQMTSELKKGRQAYVIC 475 Query: 490 PQIEEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 P IE + + ++VVE + SL ++ + ++HG++ +K+ VM F N +L++ Sbjct: 476 PLIESSEHLEDVQNVVELYESLQSYYGVEKVGLLHGKLHSDEKDEVMQRFSNHEIDILVS 535 Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607 TTV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E+ S C+L+ P ++ R Sbjct: 536 TTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEQQSYCVLIASPK-TETGIER 594 Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 ++++ T DGF ++E DL+ R G+ G+KQSG+P FL+A +LE+AR +A ++ Sbjct: 595 MNIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANVVEDYKMLEVARDEAAELI 654 >gi|302525016|ref|ZP_07277358.1| ATP-dependent DNA helicase RecG [Streptomyces sp. AA4] gi|302433911|gb|EFL05727.1| ATP-dependent DNA helicase RecG [Streptomyces sp. AA4] Length = 717 Score = 358 bits (920), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 225/676 (33%), Positives = 366/676 (54%), Gaps = 49/676 (7%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP--YKILLNDGTGE 100 DLL ++P + +R I+ + T+ I + S +++ R +++ DG Sbjct: 31 DLLRHYPRRYAERGELTDIAGLELGEHATVLARIEKISKRRMKSRNGTILDMVITDGKRR 90 Query: 101 ITLLFF---YRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ------DV 151 + FF +R+ E+ G+ GK+ ++ + + +P Y +++ D Sbjct: 91 LACAFFNQAWREKELAP-----GKTGLFAGKVTAFRDTLQLANPEYELLDAEREAEAVDN 145 Query: 152 NFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHN 211 I VY G+ K + + L L V + + +DL ++ P + A IH Sbjct: 146 FLAEIIPVYPAAQGMPTWSIAKCVRQVLDVLEVGEDPMPEDLRKRHGLPGLERALRGIHR 205 Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMR-KQFKKEIGIPINVEGKIAQKILRNIP 270 P +D+ +R RL +DE +A Q+ R + +V+G + + +P Sbjct: 206 P---EDWAHLESSRHRLKWDEAMAVQLIFAQRRHSAVSRPAKASPHVDGGLLDAFDKRLP 262 Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q + +I D+S ++ M R+LQG+VGSGKT+VAL AM V++G QA ++AP Sbjct: 263 FDLTAGQRAIGDEIAADLSTEHPMNRLLQGEVGSGKTVVALRAMLQVVDSGRQAAMLAPT 322 Query: 331 GILAQQHYEFIKKY------------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378 +LA QH +++ +N I ++TG+M R+KAL G+A I Sbjct: 323 EVLAAQHARSLREMLGDLGRAGELGAAENATRIT-LLTGSMGAKERKKALLETVSGEAGI 381 Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK---ATAPHVLLMTATPIPRTL 435 ++GTHAL QD++Q+ L LV+VDEQHRFGV+QR L + +T+PHVL+MTATPIPRT+ Sbjct: 382 VVGTHALIQDTVQFADLGLVVVDEQHRFGVEQRDALRSRGADSTSPHVLVMTATPIPRTV 441 Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQ 491 +T GD++IS + E P GR PIKT ++P+ D V +R+ + +G +AY +CP+ Sbjct: 442 AMTVYGDLEISALREMPVGRSPIKTTVVPVAEKPAWFDRVWQRVSEEVGKGHQAYVVCPR 501 Query: 492 IEEKKESNFR------SVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543 I ++ S+ +V++ L IA +HGRM +K++VM +F G + Sbjct: 502 IGDEPPSDKSDKRPPLAVLDVAPDLANGALKGLKIAALHGRMPTDEKDAVMQAFGAGKVE 561 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L+ATTV+EVG++V +A+ ++I +A+ FG++QLHQLRGRVGRG C+L+ + Sbjct: 562 VLVATTVVEVGVNVPNATAMVILDADRFGVSQLHQLRGRVGRGSVPGLCLLVTETLDGTS 621 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKD 662 + RL+ +++T DGF ++ DL+ R+EG+ILG QSG L L D L+ AR Sbjct: 622 TRERLAAVESTTDGFELSRLDLELRREGDILGAAQSGKRSGLKLLSLLRDEDLITEARAQ 681 Query: 663 AKHILTQDPDLTSVRG 678 A+ ++T DP+L S+ G Sbjct: 682 AQELVTGDPELVSLPG 697 >gi|271969202|ref|YP_003343398.1| ATP-dependent DNA helicase RecG [Streptosporangium roseum DSM 43021] gi|270512377|gb|ACZ90655.1| ATP-dependent DNA helicase RecG [Streptosporangium roseum DSM 43021] Length = 723 Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 226/672 (33%), Positives = 370/672 (55%), Gaps = 43/672 (6%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP--YKILLNDGT-G 99 DLL ++P + +R + ++ + VT+ G +++ ++ + ++ + DG Sbjct: 31 DLLRHYPRRYAERGELTDLDDLQVDEHVTVVGEVTRAMRKPMRNKGGTWLEVEVVDGRRS 90 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL----KNRIIMVHPHY-IFHNSQDVNFP 154 +I L FF + + + ++ G + GK+ K R + HP + +F ++ Sbjct: 91 KIYLSFFGKTSHIAESRLRPGARGMFAGKVGAFGQGDKRRWQLSHPEFEMFDETEAGAEE 150 Query: 155 LIEAVYSL-PTGLSVDLF--KKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHN 211 A+ + P G V + ++ + L + L + + +L + P +AEA +H Sbjct: 151 FAAALVPIYPAGKDVTPWAIRRALGVVLDTMGPLDDPLPAELRARHKLPGLAEALLAVHR 210 Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-IAQKILRNIP 270 PR D + AR+RL +DE Q LL R P G + R +P Sbjct: 211 PRDHGDV---TRARKRLKFDEAFLLQAVLLQRRMAAASWPATPRPPRGDGLLADFDRRLP 267 Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T+ Q+S +++ D++ + M R+LQG+VG+GKT+VAL AM V+AGGQAV++AP Sbjct: 268 FRLTEGQQSVGEEVSADLALAHPMHRLLQGEVGAGKTVVALRAMLQVVDAGGQAVLLAPT 327 Query: 331 GILAQQHYEFIKKYTQN-------TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 +LAQQH+ I + +V ++TG++ A RR A+ A G A I++GTH Sbjct: 328 EVLAQQHHRSISAMLGDLAAGGMFGGTVVALLTGSLGAAARRSAMLDAASGAAGIVVGTH 387 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPRTLVLTSLG 441 A+ Q+ +Q+ L LV+VDEQHRFGV+QR L +KA PHVL+MTATPIPRT+ +T G Sbjct: 388 AVLQERVQFADLGLVVVDEQHRFGVEQRDALREKAGGGRPHVLVMTATPIPRTVAMTVFG 447 Query: 442 DIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEE--- 494 D+ +S +++ P+GR PI T ++P +D RL+ + G++AY +CP+I + Sbjct: 448 DLTVSTLSQLPSGRAPITTHVVPAAEKPHFLDRTWTRLREEVGLGRQAYIVCPRIGDLEG 507 Query: 495 -----KKESNFR----SVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCK 543 K+ + R +V++ L E + A++HG++ +K++VM +F G Sbjct: 508 DEGDLSKDDDERRPPLAVLDVAQMLSEGPLHGLRTAVLHGKLPPEEKDAVMRAFTRGETD 567 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +++ATTVIEVG+DV ++S+++I +A+ FG++QLHQLRGRVGRG C+L+ P Sbjct: 568 VMVATTVIEVGVDVPNSSVMVIMDADRFGVSQLHQLRGRVGRGGLPGLCLLVTDSPGGTP 627 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKD 662 + RL + T DGF ++ DL+QR+EG++LG+ QSG L L D ++ AR+D Sbjct: 628 ARQRLDAVAATLDGFELSRVDLEQRREGDVLGVAQSGRRSSLKLLQLLRDEDVIHAARQD 687 Query: 663 AKHILTQDPDLT 674 A+ +LT DPDL Sbjct: 688 AEAMLTADPDLA 699 >gi|89891409|ref|ZP_01202915.1| ATP-dependent DNA helicase RecG [Flavobacteria bacterium BBFL7] gi|89516440|gb|EAS19101.1| ATP-dependent DNA helicase RecG [Flavobacteria bacterium BBFL7] Length = 701 Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 244/701 (34%), Positives = 375/701 (53%), Gaps = 31/701 (4%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE-IS 65 N L P+ GVG + L + + + DL P+ +ID+ KI+E + Sbjct: 4 NFLHTPIDYLNGVGPARAKLLKAELGI-----STYGDLANLFPNRYIDKTKYYKINELVP 58 Query: 66 EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 + V I G ++ + + DGTG + L++F + + K+ V Sbjct: 59 DSAHVQIVGKVTHLKTMGDGRASRLIATFIDGTGSMELVWF-KGQKYFKDNLKLNEPYVV 117 Query: 126 TGKIKKLKNRIIMVHPHYIF---HNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 GK+ K ++ + HP H S Q P+ + L ++ K++V + Sbjct: 118 YGKVSKYGSKYNIAHPDVELLKEHRSRQQSAMTPIYPSTEQLT---KRNVTNKMVVRMMQ 174 Query: 181 RL--PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 +L V + E Q ++ + + ++N K + RL ++EL Q+ Sbjct: 175 QLFSEVQNSFTETLSGQIRAQHQLVDKNTAMYNAHFPKSAALLQQSIYRLKFEELFFIQM 234 Query: 239 ALLLMRKQFKKEI-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLR 296 LLL + K I G G+ N +PF T +Q+ +K+I DM M R Sbjct: 235 ELLLQNRIRKSRIKGYAFEKVGEQFNDFYSNHLPFELTGAQKRVVKEIRADMGTGAHMNR 294 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 +LQGDVGSGKT+VA++ A++ G QA IMAP ILAQQH++ + + +NT + V ++T Sbjct: 295 LLQGDVGSGKTIVAILTCLLAIDNGFQACIMAPTEILAQQHFQGVSELLKNTGLQVALLT 354 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G++ RR + G +I+IGTHAL +D + + L + IVDEQHRFGV QR KL + Sbjct: 355 GSVKTKARRVIHSDLEDGSLNILIGTHALIEDKVIFKNLGVAIVDEQHRFGVAQRAKLWK 414 Query: 417 KAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE----V 471 K PHVL+MTATPIPRTL ++ GD+DIS I E P GRK IKTV +R D+ V Sbjct: 415 KNNLPPHVLVMTATPIPRTLAMSLYGDLDISVIDELPPGRKEIKTV----HRYDKNRLGV 470 Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDI 528 LK +++G++ Y + P IEE + +++ +++ + S+ F + ++I+HGRM Sbjct: 471 FSFLKEEITKGRQVYMVYPLIEESETLDYKDLMDGYESVVREFPAPQYQVSIVHGRMKPE 530 Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588 DK+ M+ F G ++++ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG + Sbjct: 531 DKDYEMERFVKGETQIMVATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGRGAD 590 Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648 S CIL+ LS + TR+ + T DGF IAE DLK R G+++G +QSG+ +A Sbjct: 591 QSFCILMTSYKLSAEAKTRVETMVATTDGFEIAEVDLKLRGPGDMMGTRQSGVLALRVAD 650 Query: 649 PELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQ 689 + +L IAR A +L +D L SI+ +L Q Sbjct: 651 IVKDNDILAIARNTAIDLLQKDATLELPEHASIKKVLQFLQ 691 >gi|319937588|ref|ZP_08011993.1| ATP-dependent DNA helicase [Coprobacillus sp. 29_1] gi|319807428|gb|EFW04037.1| ATP-dependent DNA helicase [Coprobacillus sp. 29_1] Length = 669 Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 191/521 (36%), Positives = 317/521 (60%), Gaps = 19/521 (3%) Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRL-----PVLPEW--IEKDLLQKKSFPSIAEAFNI 208 + VYSL GL+ F++ + +AL+ L +PE I+ L+ K+S A Sbjct: 131 VHPVYSLKEGLTQKSFQQYVKKALNLLKGNIESFVPEEYIIKHQLIHKES------ALWN 184 Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268 IH P+ +D + A + L Y+E L Q+ + +++Q E+GI + + Q + + Sbjct: 185 IHFPQSQEDIKQ---ALKYLKYEEFLKFQLTMQTIKQQRTLEVGIAKRFDVQKFQSFILS 241 Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 +P+ T+ Q++++K+I+ D+ M R LQGDVGSGKT+V+ +A+ A AG Q +MA Sbjct: 242 LPYQLTQDQQTSVKEIVSDLQSPRMMYRFLQGDVGSGKTVVSSVALYANYLAGYQGALMA 301 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P ILA QHY+ + + ++T + + ++TG++ + + E+I +G +I+GTHALFQ Sbjct: 302 PTEILASQHYQTLLSFFKDTDVKIALLTGSLTNKEKERIYEQIQNGDIDMIVGTHALFQK 361 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 ++Y++L VI DEQHRFGV+QR L K + L+M+ATPIPRTL ++ GD+D+S + Sbjct: 362 KVEYHRLGFVITDEQHRFGVEQRKALKNKGSQVDFLIMSATPIPRTLAISMYGDMDVSTM 421 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P GR P+ T I + + +++ LK L+ G + Y ICP +E+ + + +S + Sbjct: 422 KTMPKGRIPVVTKYIKSSSMKPILKDLKEYLASGGQCYVICPLVEDSEVLDAKSASQIAE 481 Query: 509 SLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 ++ ++F T + ++HG+M D +K+ +M F+ +L++TTV+EVG+DV +A++++I Sbjct: 482 AMQQYFRGTYQVGLLHGQMKDDEKDRIMQDFQKQKIHILVSTTVVEVGVDVKNANMMVIY 541 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626 NAE FG++QLHQLRGRVGRG + + C + SK + RL ++ + DGF I+ DL+ Sbjct: 542 NAERFGMSQLHQLRGRVGRGHQQAYCFFM-SSSTSKEAIERLKYMEKSHDGFEISMYDLQ 600 Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 R GE+LG +QSG+P FL+A +L +AR+DA I+ Sbjct: 601 IRGPGEVLGNRQSGLPTFLVADVFKDFPILNVAREDAMRIV 641 >gi|167586203|ref|ZP_02378591.1| ATP-dependent DNA helicase RecG [Burkholderia ubonensis Bu] Length = 450 Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 189/427 (44%), Positives = 269/427 (62%), Gaps = 10/427 (2%) Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318 G + ++ +PF+ T +Q + +I D++ + M R+LQGDVGSGKT+VA +A A A+ Sbjct: 8 GALTTRLYAALPFTLTGAQARVVDEIAHDLTLPHPMQRLLQGDVGSGKTVVAALAAAQAI 67 Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378 +AG QA +MAP ILA+QH ++ + + + V + G++ +R A+E A G A + Sbjct: 68 DAGYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKEKRAAIEAAALGTAQL 127 Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTAT 429 +IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+AT Sbjct: 128 VIGTHAIIQDAVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAQGFQPHQLMMSAT 187 Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489 PIPRTL +T D+D+S I E P GR PI T ++ R +EVI R++ G++ YW+C Sbjct: 188 PIPRTLAMTYYADLDVSTIDELPPGRTPILTRLVGDARREEVIARVREAALTGRQVYWVC 247 Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548 P IEE + ++ VE + +L + ++HGR+S DK +VMD+F +LL+AT Sbjct: 248 PLIEESETLQLQTAVETYETLVAALPELKVGLVHGRLSTADKAAVMDAFTRNEVQLLVAT 307 Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608 TVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+LLY PLS RL Sbjct: 308 TVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYSGPLSLAGRARL 367 Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668 ++ T DGF IA DL+ R GE LG +QSG A E L+E AR+ A ++ Sbjct: 368 KTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLIEPAREAAARLIA 427 Query: 669 QDPDLTS 675 PD+ + Sbjct: 428 AYPDVVT 434 >gi|302670822|ref|YP_003830782.1| ATP-dependent DNA helicase RecG1 [Butyrivibrio proteoclasticus B316] gi|302395295|gb|ADL34200.1| ATP-dependent DNA helicase RecG1 [Butyrivibrio proteoclasticus B316] Length = 689 Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 249/691 (36%), Positives = 376/691 (54%), Gaps = 52/691 (7%) Query: 15 TFRGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRPKISEISEERI---- 69 +G+G+K + K CG R + DLL Y+P + + S++ +I Sbjct: 12 NLKGIGEKTAKLFEK---CG----VRTVGDLLSYYPRCYDGYEIPVRASDVRPGQINSVK 64 Query: 70 VTITGYISQHSSFQLQKRRPYKILL-----NDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124 +TI G I KRR + + D TG+I + +F L + G Sbjct: 65 LTIIGSII--------KRRVRNLSIIAFEAADQTGKIKMTYF--NAPYLASSLKSGTTHI 114 Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV---YSLPTGLSVDLFKKIIVEALSR 181 G ++K + M P SQ+ L+ + Y L GL+ ++ K + +A Sbjct: 115 FRGMVQKKGSFYTMDQPKMY---SQEEYASLVGRLMPRYPLVKGLTNNIVIKAVEQAFLN 171 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 + L E++ + +L + S +EA IH P K E AR RLAYDE L + L Sbjct: 172 IGKLEEFVPQTILDRLSLIGYSEAARSIHFPENDKKLE---EARRRLAYDEFLL-FVLKL 227 Query: 242 LMRKQFKKEIG--IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 + K ++EI P+ VE +++L +P+ T +Q A KDI D+ + M R++Q Sbjct: 228 RLLKMTQEEISNSFPM-VEVSETKRLLEVLPYKLTNAQSLAWKDIQNDLQGPSVMNRLIQ 286 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE----FIKKYTQNTQIIVEII 355 GDVGSGKT++A++A+ G Q +MAP +LA QH+E I KY N Q + I+ Sbjct: 287 GDVGSGKTVIAMLALLTTAANGYQGALMAPTEVLAAQHFENFKELIDKY--NIQHLKPIL 344 Query: 356 -TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 TG + +++A I+ G+A+ IIGT+AL Q+ + Y L LV+ DEQHRFGV+QR L Sbjct: 345 LTGALSAKDKKEAQRLISEGEANCIIGTNALIQEKVSYKNLALVVTDEQHRFGVRQREAL 404 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 K HVL M+ATPIPRTL + GD+ IS I E P GR PIK ++ + Sbjct: 405 AGKGLNTHVLAMSATPIPRTLAIILYGDLHISVINELPGGRLPIKNCVVGTEYRPTAYKF 464 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKES 532 +K + G++AY ICP IEE + +VV+ +L ++ S+A++HG+M K+ Sbjct: 465 IKDQVEAGRQAYVICPMIEEGEMDGVTNVVDYTETLRQNLPPDISVAMLHGKMKPAQKDE 524 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +M++F +L++TTVIEVGI+V +A++++IENAE FGL+QLHQLRGRVGRG+ S C Sbjct: 525 IMEAFARKDIDVLVSTTVIEVGINVPNATVMMIENAERFGLSQLHQLRGRVGRGKYQSYC 584 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 I L + S ++ RL ++ T DGF IAEEDL+QR G++ G++QSG F + H Sbjct: 585 IFL-NTSESDDAKKRLDIMNKTNDGFKIAEEDLRQRGPGDLFGVRQSGDLNFRLGDI-YH 642 Query: 653 DS-LLEIARKDAKHILTQDPDLTSVRGQSIR 682 DS L++ + DA IL++DP+L S + +R Sbjct: 643 DSDLVKESAMDADRILSEDPELLSTQYSVLR 673 >gi|317129245|ref|YP_004095527.1| ATP-dependent DNA helicase RecG [Bacillus cellulosilyticus DSM 2522] gi|315474193|gb|ADU30796.1| ATP-dependent DNA helicase RecG [Bacillus cellulosilyticus DSM 2522] Length = 678 Score = 358 bits (918), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 232/655 (35%), Positives = 364/655 (55%), Gaps = 18/655 (2%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P+S GVG + + ++ N G + I+ L P + D R +++E E +T Sbjct: 5 PVSKIHGVGPR---MVEQLENMGIETVQQLIEHL---PFRYEDHAVR-RVTEAEHEERIT 57 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G + + + ++ + + L + LK G IT++GK + Sbjct: 58 VRGTVHSEPLLRFYGKNKSRLTVRVLVDGLLLQAVFFNQPYLKRQISLGEVITLSGKFDR 117 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIE 190 + +M+ + +VN L E VYS+ L + +KII +A ++ + E + Sbjct: 118 HR---LMLSGGTLKTTENNVNEGL-EPVYSIRGNLKITALRKIIQQAFTQFEGQMEEILP 173 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 LL AE + +H P E A+ R+ Y+E L Q+ + L RK+ ++ Sbjct: 174 SQLLTSYRLMGRAETIHQLHFP---TSIEKLKQAKRRMIYEEFLLFQLKMQLFRKKEREA 230 Query: 251 I-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309 + G + ++ +PF T +Q I +IL+D+ + RM R+LQGDVGSGKT+V Sbjct: 231 VQGQKKFFSQNVIEEFKTKLPFPLTNAQLRVIDEILKDLQSEYRMNRLLQGDVGSGKTVV 290 Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369 A A+ A ++AG Q +M P ILA+QH E + + I V+++TG+ RR LE Sbjct: 291 AACALFAVIQAGLQGALMVPTEILAEQHKESLVDLLEPFGIKVQLLTGSTKVKERRAILE 350 Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429 + G+ II+GTHAL Q+ + + L LVI DEQHRFGV+QR L +K P VL MTAT Sbjct: 351 ELREGKIDIILGTHALIQEGVDFKNLGLVITDEQHRFGVEQRRILRKKGIRPDVLFMTAT 410 Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489 PIPRTL +++ GD+D+S I E P GR P+ T + + + +I+ + L+ GK+AY IC Sbjct: 411 PIPRTLAISAFGDMDVSVIDEMPKGRLPVDTRWVKHDMLPRIIQFMDKQLNVGKQAYVIC 470 Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548 P IEE ++ + ++ ++ L + I ++HGR+S +KESVM+ F +L++T Sbjct: 471 PLIEESEKLDVQNAIDVHLQLSQALPQYKIGLMHGRLSSDEKESVMNEFARNKVSVLVST 530 Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608 TV+EVG++V +A++++I +AE FGLAQLHQLRGRVGRG+E S CILL P S R+ Sbjct: 531 TVVEVGVNVPNATLMVIYDAERFGLAQLHQLRGRVGRGKEQSYCILLADPK-SDMGKERM 589 Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 ++ +T +GF ++E DL+ R G+ G KQSG+PKF +A +LE+AR+DA Sbjct: 590 QIMVDTNNGFELSERDLELRGPGDFFGSKQSGLPKFKVADIVEDFKVLEVARQDA 644 >gi|187250617|ref|YP_001875099.1| ATP-dependent DNA helicase RecG [Elusimicrobium minutum Pei191] gi|186970777|gb|ACC97762.1| ATP-dependent DNA helicase RecG [Elusimicrobium minutum Pei191] Length = 691 Score = 358 bits (918), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 234/655 (35%), Positives = 352/655 (53%), Gaps = 40/655 (6%) Query: 43 DLLFYHPSSFIDRHYRPKI-SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE- 100 D+L Y+P ++ DR RP + +E + +V G +++ S + +K L D G Sbjct: 27 DILRYYPRTYQDR--RPGVLNEFCSQGLVVFLGRVARTQSIPAKSVHIFKAFLEDDKGNN 84 Query: 101 ITLLFFYRKTEM---------LKNVFFEGRKITVTGKIKKLKNRI---IMVHPHYIFHNS 148 I +F ++T LK F G + V GK + ++ I I V +Y Sbjct: 85 IECTWFKKRTFFKARFDPMGSLKKDFKMGVWVWVIGKREDKESFISNKITVEEYYSADKQ 144 Query: 149 QD-VNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--------LPVLPEWIEKDLLQKKSF 199 + ++ + VYSL GL+ F+ + AL + LPV L++K+S Sbjct: 145 ESLIHVNRLTPVYSLTQGLTGKFFRTAVHFALEKYLFEEHESLPV-------SLVKKRSL 197 Query: 200 PSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259 +A IH P + + AR+RL Y+E L A + ++Q + +++ Sbjct: 198 LGAKQALKAIHFPSNTPELD---AARKRLVYEEFLLLTSAWGIKKQQKTVQKNYTYHIKT 254 Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319 + N+ F T +Q+ I +I +DM M R+LQGDVGSGKT VAL AM AVE Sbjct: 255 NLLTPFKNNLGFELTHAQKKVINEIFKDMQSTLPMTRLLQGDVGSGKTTVALSAMLLAVE 314 Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379 QA +MAP ILA+QH+ I + + + ++T ++ + K L +A G+ I+ Sbjct: 315 NKFQAALMAPTEILAEQHFITITNFLKGLDVKTALLTSSVKGKTKEKLLADLAEGKIDIL 374 Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439 +GTH++ +D++ + L + +VDEQHRFGV+QR +L KA +L MTATPIPRTL L Sbjct: 375 VGTHSIIEDNVVFKNLKMTVVDEQHRFGVEQRTRLRNKAKEIDMLTMTATPIPRTLALAF 434 Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499 GD+++S ITE P GRKPI T I E ++ K L +G++ Y + P IEE ++ Sbjct: 435 YGDLEVSAITELPPGRKPITTFSITEG---EAYQKAKSELEKGRQVYIVYPLIEESEKLT 491 Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 ++V E + F + ++HG+M +KE M FK+ +L+AT VIEVGIDV Sbjct: 492 VKAVKEDIEKIEGVFAPYKVGMLHGQMKRAEKEKAMADFKDKKTDVLVATPVIEVGIDVK 551 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618 +A++++I++AE FGLA LHQLRGRVGRG E S C+L+ H LS S R+ +L T DGF Sbjct: 552 NATVMVIQSAERFGLASLHQLRGRVGRGSEESFCLLVPH-NLSTVSKERIDILCQTTDGF 610 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 I E D++ R GEILG +QSG +F +L+ A +D +LTQDP L Sbjct: 611 KIGERDMQLRGPGEILGTRQSGDFEFKAGDIFKDQEVLKWAIEDRDELLTQDPKL 665 >gi|160939091|ref|ZP_02086442.1| hypothetical protein CLOBOL_03985 [Clostridium bolteae ATCC BAA-613] gi|158438054|gb|EDP15814.1| hypothetical protein CLOBOL_03985 [Clostridium bolteae ATCC BAA-613] Length = 685 Score = 358 bits (918), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 219/672 (32%), Positives = 367/672 (54%), Gaps = 27/672 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS--EISEERI 69 P+++ +G+G+K K+ DLL Y+P ++ Y P +S ++ E+ + Sbjct: 6 PVNSLKGIGEKTGKLFEKL------GVVTIDDLLSYYPRAY--DAYEPPVSIGQLKEQAV 57 Query: 70 VTITGYISQHSSF-QLQKRRPYKILLNDGTGEITLLFF---YRKTEMLKNVFFEGRKITV 125 + + + + + +L + + L D TG + + ++ Y + + V + R Sbjct: 58 MAVESALVRGADLLRLGHMQIVSVQLKDLTGSLQVSWYNMPYMRANLKTGVTYVFR---- 113 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 G++ K + R++M P +S ++ VY GLS + AL + Sbjct: 114 -GRVVKKRGRMVMEQPEVFTPDSYQALAGSMQPVYGQTRGLSNKTIVRAQQMALEMRKME 172 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 E++ DL ++ I A IH P + + AR+RL +DE + + +++ Sbjct: 173 REYMPPDLRRRYELAEINYAMEHIHFPADQTELLF---ARKRLVFDEFFMFLVGVRRLKE 229 Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 + + E + ++P++ T +QE A++++ DM M R++QGDVGSG Sbjct: 230 HREDRHSAFMIKESEEVAAFQSSLPYALTGAQERALREVYGDMGSGLVMNRLIQGDVGSG 289 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY--TQNTQIIVEIITGNMPQAH 363 KT++A++A+ A G Q +M P +LA+QH+E + Q + + ++TG+M Sbjct: 290 KTIIAILALLEAAYNGYQGALMVPTEVLARQHFESMTGLFEKQGIEKVPVLVTGSMTAKE 349 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 +R A +IA +A IIIGTHAL Q+ + Y L LVI DEQHRFGV QR L+ K PHV Sbjct: 350 KRLAYAKIASHEADIIIGTHALIQEKVVYDNLALVITDEQHRFGVGQRELLSSKGQEPHV 409 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+M+ATPIPRTL + GD+DIS I E PAGR+ IK ++ + ++ ++EG Sbjct: 410 LVMSATPIPRTLAIILYGDLDISVIDELPAGRQTIKNCVVDPGYRPKAYAFIERQVAEGH 469 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGT 541 +AY ICP +EE + +V++ +L + S+ + +HG++ +K ++M+ F G Sbjct: 470 QAYVICPMVEESEMIEAENVLDYTKALRKALPPSVTVEYLHGKLKGKEKNAIMERFAAGE 529 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L++TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG++ S CI++ + Sbjct: 530 IHVLVSTTVIEVGVNVPNATVMMIENAERFGLAQLHQLRGRVGRGKDQSYCIMV-NCSRD 588 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 + + RL +L + DGF IA EDLK R G+I G++QSG +F +A ++L+ + Sbjct: 589 QGAGERLDILNRSNDGFYIASEDLKLRGPGDIFGLRQSGDMEFKLADIFTDANILKKVSE 648 Query: 662 DAKHILTQDPDL 673 + +L +DP L Sbjct: 649 EVNRLLDEDPQL 660 >gi|167564023|ref|ZP_02356939.1| ATP-dependent DNA helicase RecG [Burkholderia oklahomensis EO147] Length = 450 Score = 358 bits (918), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 189/426 (44%), Positives = 270/426 (63%), Gaps = 10/426 (2%) Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319 ++ ++ +PF T +QE + +I D++Q + M R+LQGDVGSGKT+VA +A A A++ Sbjct: 9 SLSARLYAALPFRLTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAID 68 Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379 AG QA +MAP ILA+QH ++ + + + V + G++ +R ALE A G A ++ Sbjct: 69 AGYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKTKEKRAALEAAALGTAQLV 128 Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATP 430 IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATP Sbjct: 129 IGTHAMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATP 188 Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490 IPRTL +T D+D+S I E P GR PI T ++ R DEVI R++ G++ YW+CP Sbjct: 189 IPRTLAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCP 248 Query: 491 QIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549 IEE + ++ VE + +L + ++HGR++ +K +VMD+F +LL+ATT Sbjct: 249 LIEESETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATT 308 Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609 VIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG S C+L+Y PLS RL Sbjct: 309 VIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGIAASVCVLIYSGPLSIAGRARLK 368 Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669 ++ T DGF IA DL+ R GE LG +QSG A E L+E AR+ A ++ Sbjct: 369 TMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPAREAAARLIAG 428 Query: 670 DPDLTS 675 PD+ + Sbjct: 429 YPDVVA 434 >gi|167817316|ref|ZP_02448996.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei 91] Length = 444 Score = 358 bits (918), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 188/417 (45%), Positives = 266/417 (63%), Gaps = 10/417 (2%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 +PF+ T +QE + +I D++Q + M R+LQGDVGSGKT+VA +A A A++AG QA +MA Sbjct: 12 LPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQAALMA 71 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P ILA+QH ++ + + + V + G++ +R ALE A G A ++IGTHA+ QD Sbjct: 72 PTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTHAMIQD 131 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLVLTS 439 ++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRTL +T Sbjct: 132 TVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRTLAMTY 191 Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499 D+D+S I E P GR PI T ++ R DEVI R++ G++ YW+CP IEE + Sbjct: 192 YADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEESETLQ 251 Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 ++ VE + +L + ++HGR++ +K +VMD+F +LL+ATTVIEVG+DV Sbjct: 252 LQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEVGVDVP 311 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618 +AS+++IE+AE FGLAQLHQLRGRVGRG S C+L+Y PLS RL ++ T DGF Sbjct: 312 NASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRETTDGF 371 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 IA DL+ R GE LG +QSG A E L+E AR A ++ P++ + Sbjct: 372 EIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEVVA 428 >gi|331083798|ref|ZP_08332907.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium 6_1_63FAA] gi|330403223|gb|EGG82783.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium 6_1_63FAA] Length = 685 Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 228/696 (32%), Positives = 367/696 (52%), Gaps = 47/696 (6%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP-KISEISEERIVT 71 + +G+G+K L+K+ T D L Y+P + D + P +S+++ + Sbjct: 7 IRNIKGIGEKTEKLLAKL------GITTVGDFLRYYPREY-DEYTEPVGVSQVTAGKKCA 59 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTE------------MLKNVFFE 119 + G I+ + TG +T++ K E L+N Sbjct: 60 VMGRITGKVGVR-------------NTGRLTIVTATLKEENSFLQLTWYNMPFLRNTLRS 106 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 G G + R M P + +Y L GL+ L K I + L Sbjct: 107 GGFYIFRGMVTDKNGRKTMEQPEIFKREDYKALLHSLYPIYGLTKGLTNKLMVKTIHQIL 166 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 ++ E++ ++ A + IH P+ KD RL +DE L ++ Sbjct: 167 ENKEIVQEYLPEEYRNYYQLAEYNYAVSHIHFPKDKKDLLL---GHHRLVFDEFLLFILS 223 Query: 240 LLLMRKQFKKEIGIPINVEGKI---AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 + +M+++ + +P + K + ++ +P+ T +Q+ +I +DM+ M R Sbjct: 224 IRMMKEKTQD---MPNSFAIKPVWETENVIDGLPYPLTNAQKRVWNEIERDMTGHTLMSR 280 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE--I 354 ++QGDVGSGKT++A +AM A G Q+ +M P +LA+QH++ ++K + Q+ ++ + Sbjct: 281 LVQGDVGSGKTIMAFLAMLLAAFNGYQSALMVPTEVLAKQHFKEMEKLLKEHQLPLKAVL 340 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 +TG+ +R+ +IA G+A +IIGTHAL Q+ ++Y L LVI DEQHRFGVQQR L Sbjct: 341 LTGSNTAKEKRERCAQIASGEAKLIIGTHALIQEKVEYENLALVITDEQHRFGVQQREDL 400 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 ++K T PHVL+M+ATPIPRTL + GD+DIS + E PA R PIK ++ + Sbjct: 401 SKKGTRPHVLVMSATPIPRTLAIILYGDLDISVMDELPAKRLPIKNCVVDTSYRPRAYHF 460 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKES 532 ++ + EG++ Y ICP +EE + + +V++ L E S S+A +HGRM +K Sbjct: 461 IQKQVEEGRQVYVICPMVEESEGLDAENVIDYTQILKEALPSDISVAYLHGRMKAGEKNK 520 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +M++F ++L++TTVIEVG++V +A+++++ENAE FGLAQLHQLRGRVGRGE S C Sbjct: 521 IMEAFAANEIQVLVSTTVIEVGVNVPNATVMMVENAERFGLAQLHQLRGRVGRGEHQSYC 580 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 I + + RL +L + DGF IA EDL+ R G+ GI+QSG+ +F IA Sbjct: 581 IFV-QGGQDTETKERLEILVKSNDGFQIAGEDLRLRGPGDFFGIRQSGLMEFKIADIYQD 639 Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLY 688 +L+ A + A IL DPDL+ + + +R L+ Y Sbjct: 640 AEILKEAGEAAGAILALDPDLSLPQHERLRDRLFSY 675 >gi|300858338|ref|YP_003783321.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis FRC41] gi|300685792|gb|ADK28714.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis FRC41] gi|302206056|gb|ADL10398.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis C231] gi|302330607|gb|ADL20801.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis 1002] gi|308276292|gb|ADO26191.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis I19] Length = 704 Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 233/674 (34%), Positives = 357/674 (52%), Gaps = 58/674 (8%) Query: 40 RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP------YKIL 93 R DLL + P ++ E I+T G I S +RR Y + Sbjct: 30 RAEDLLMHLPRAYAAHGAGLSAGHAQEGDIITCIGDIVSTS-----ERRDRNGNLIYTVE 84 Query: 94 LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153 ++DG T FF + L V +G + TGK+K + + + HP + Sbjct: 85 ISDGAVTTTATFF--RANWLSKVLVKGARGMFTGKLKFFREKSQLQHPDFFLFPDPGTKT 142 Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEW----IEKDLLQK------- 196 + +L T D II +L+ +PV +P W ++L K Sbjct: 143 RSSGGLQALSTTGEFDHVTHII-NSLAYIPVYPAKKAMPTWRILGAIHEILSKTPPIVDP 201 Query: 197 ------KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 P++ +A H D E P RL Y+E L+ + + L R K+ Sbjct: 202 LGNFKPDDMPTLDQAIRGAHE----TDCERAEPYINRLKYNEALSIALVMALRRADMKRR 257 Query: 251 IGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309 P+ + + +L+ +PF T+ Q+ ++I +D+ + M R+LQG+VGSGKT+V Sbjct: 258 QAFPMPASQTGLRATLLKALPFQLTEGQQQVAQEIEEDLGKNTPMSRLLQGEVGSGKTIV 317 Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY--TQNTQIIVEIITGNMPQAHRRKA 367 +LIAM AV+A Q ++AP +LA QH I+ N Q+ V ++TG++ A R+KA Sbjct: 318 SLIAMLQAVDAHKQCALLAPTEVLATQHAHSIRATLAAANIQLTVVLLTGSLSTAERKKA 377 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVL 424 L I G A IIIGTHAL QD++ +Y L L +VDEQHRFGV+QR L K + PH+L Sbjct: 378 LLDIMSGDADIIIGTHALIQDTVNFYDLGLCVVDEQHRFGVEQRDYLRAKGNSELTPHLL 437 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSE 481 +MTATPIPRT+ +T+ GD+ +S + + P GR+PIKT +I + + + +R++ + Sbjct: 438 VMTATPIPRTIAMTAFGDLSVSTLRQLPGGRRPIKTFVISSDNPTWSERMWKRIREEVER 497 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKN 539 G++ Y +CP+++ N V E SL S + ++HG M DKE++M +F Sbjct: 498 GQQIYVVCPRVK-----NNGGVEETTASLQHGIFSDLRVEMLHGSMHPDDKETIMAAFAT 552 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 GT +L+ATTVIEVGIDV +A+I++I AE+FG++QLHQLRGRVGRG + S C L Sbjct: 553 GTIDVLVATTVIEVGIDVPNATIMLIREAENFGVSQLHQLRGRVGRGGKESICFLHTTAE 612 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 + R+ + T DGF +AE DL+ R+EG+ILG +QSG + I+ + +L++ A Sbjct: 613 PDTPARQRIQKVAATADGFALAEIDLEYRQEGDILGTQQSGASQKRISFIQ-DKALIQRA 671 Query: 660 RKDAKHILTQDPDL 673 DA I+ Q+P++ Sbjct: 672 NDDAAAIVQQNPNI 685 >gi|182417252|ref|ZP_02948605.1| ATP-dependent DNA helicase RecG [Clostridium butyricum 5521] gi|237667623|ref|ZP_04527607.1| ATP-dependent DNA helicase RecG [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378898|gb|EDT76411.1| ATP-dependent DNA helicase RecG [Clostridium butyricum 5521] gi|237655971|gb|EEP53527.1| ATP-dependent DNA helicase RecG [Clostridium butyricum E4 str. BoNT E BL5262] Length = 677 Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 243/676 (35%), Positives = 380/676 (56%), Gaps = 40/676 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSS--FIDRHYRPKISEISE 66 +++ +ST +GVG K + K+ CG N +D+L Y P FI+ + + + E Sbjct: 3 IYSSISTLKGVGPKAT---EKLNRCGIFN---ILDILLYFPRDYDFIEGNVEFETID-GE 55 Query: 67 ERIVTITGYISQHSSFQLQKRRPYKILLND-----GTGEITLLFFYRKTEMLKNVFFEGR 121 E+++ + + +F+ R LL G ++T +F + +KN F +G Sbjct: 56 EKLI----LLCEAKAFKRDVRTKNGKLLTTIDFQYGEHKVTAKWFNQP--YVKNNFQKGS 109 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + + GK K++ N + +V P + + ++ ++ Y L +S LF+K+I L++ Sbjct: 110 QYNLMGKFKRVGNMLEIVGP--VIACGEAISNEIVPK-YPLKGDISNKLFEKLINTILAQ 166 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 + + E + +D+L K S+ A IH P E A+ RL + EL + LL Sbjct: 167 MNI-KENLPQDILDKYKLVSLDSAIRSIHFPENKDMLE---KAKTRLKFQELFTYSLKLL 222 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L++ Q KK I E K+ + ++PF T +Q ++DIL+D + M R++QG Sbjct: 223 LLKYQLKKNSN-GIKFEWVDELKVFKESLPFPLTNAQTKVVRDILRDQKSQCPMNRLIQG 281 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VALIA+ ++ Q+V+MAP ILA QHYE KK I +E++TG Sbjct: 282 DVGSGKTIVALIAIFNVIKNNYQSVLMAPTEILATQHYEEAKKVYSQFNIEIELLTGGTS 341 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 +++ ERI + ++IGTHALFQ+ +++ +L L+I DEQHRFGV+QR +L K Sbjct: 342 IKEKKRIKERIRGNEPILVIGTHALFQEDVEFGRLGLIITDEQHRFGVEQRSRLMNKGNK 401 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 ++MTATPIPRTL L D+D+S I E P GRK I T ++ D E + Sbjct: 402 ADCIVMTATPIPRTLALYLYSDLDVSVIDELPPGRKKIDTRYYEDSKRDIAYELAYDEIK 461 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI------AIIHGRMSDIDKESVM 534 +G++ Y +CP IEE ++ SV +L+E TS+I I+HG+M +K+ ++ Sbjct: 462 KGRQVYIVCPLIEEDEKEQLNSV----ETLYEKLTSTIFKNLRVEILHGKMKGNEKDDII 517 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 FKN +LI+TTVIEVG++V +AS++I+ENAE FGLAQLHQLRGRVGRG+ S C+L Sbjct: 518 KRFKNHESDVLISTTVIEVGVNVPNASVMIVENAERFGLAQLHQLRGRVGRGQYESYCVL 577 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 + S + R+ ++ + DGFLI+E+DLK R GE+ G KQSG F +A + Sbjct: 578 IAKAK-SNITKKRMMIMTESSDGFLISEQDLKLRGAGEMFGRKQSGDAGFALANLYEDIN 636 Query: 655 LLEIARKDAKHILTQD 670 +L A+++A +I+ D Sbjct: 637 ILRCAKQEAVNIIKDD 652 >gi|325972732|ref|YP_004248923.1| ATP-dependent DNA helicase RecG [Spirochaeta sp. Buddy] gi|324027970|gb|ADY14729.1| ATP-dependent DNA helicase RecG [Spirochaeta sp. Buddy] Length = 695 Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 232/693 (33%), Positives = 361/693 (52%), Gaps = 23/693 (3%) Query: 4 SFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE 63 +++ L P++ GVG + + G + + DLL P ++ DR + Sbjct: 2 AYVRGLKQPITELSGVGPAAK---AAYLELGIST---YSDLLLLSPRTWEDRSEVHPLGG 55 Query: 64 ISEERIVTITGYISQHSSFQLQ--KRRPYKILLND----GTGEITLLFFYRKTEMLKNVF 117 + + ++ + HS F L+ K+R KIL+ D G G ++LL F R L+ Sbjct: 56 LEDAQMANTLVEVLSHSYFGLKAGKKRTLKILVRDVSGLGDGRLSLLCFGRN--FLEKTI 113 Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP----LIEAVYSLPTGLSVDLFKK 173 GR + G + + + + ++ ++D +FP I +Y L LS L + Sbjct: 114 KVGRIYYLYGSVNRNRGEL-QCSQFELYPATEDGDFPKQFGQILPIYPLRGSLSQRLIRT 172 Query: 174 IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233 + L+ + + + + + S +A H P E A LA EL Sbjct: 173 NMKAVLASVDTFEDEMTASMRENYHLLSTDQAIRAYHFP---PSVEVLHQAHRTLALTEL 229 Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 Q+ + ++ ++ K+ K + +PFS T Q +++ +I QD+ Sbjct: 230 FYLQLVARRHKSLQQRSTRTGPSIPTKLELKCIETLPFSLTGDQITSLTEIRQDLDSDMP 289 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R+LQGDVGSGKTLVA I+ + GQ MAP +LA+QH E + I + Sbjct: 290 MNRLLQGDVGSGKTLVAWISALHVLSQKGQVAFMAPTELLARQHAESGAALLEKLGIRLA 349 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 +TG++ RR LE I G+ IIIGTHALF + + L VI+DEQHRFGV+QRL Sbjct: 350 FLTGSVKNKERRLLLEAIKGGEVDIIIGTHALFSAEVAFRNLRYVIIDEQHRFGVEQRLA 409 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 L +KA P +LLMTATPIPRTL LT G++++S + PAGRKP+ T ++ + + Sbjct: 410 LLEKAQVPDLLLMTATPIPRTLSLTVFGNLNVSTLRTMPAGRKPVITHLVNEQSRKRMYQ 469 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL-HEHFTSSIAIIHGRMSDIDKES 532 + V G +AY++ P+I++ ES+ R V + L +E+ T A+IH ++ + +K Sbjct: 470 AVGVEFQRGHQAYFVYPRIDDSGESDLRDVNNMYEFLKNEYPTVPSALIHSKLDEEEKVH 529 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 ++ ++ G L++T+V+EVGID+ +A+ ++IE+A+ FGL+ LHQLRGRVGR S C Sbjct: 530 ILKEYQGGRIAYLVSTSVVEVGIDIPNATCMVIEHADRFGLSALHQLRGRVGRSVLQSYC 589 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 L++ L+ + RL V+K + DGF IAE+DL R GE+ G +QSG K + A Sbjct: 590 FLVFGDELTDEAKQRLKVMKESNDGFYIAEQDLLIRGPGELTGTRQSGYLKLIYASLTDD 649 Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685 L+EIAR +A HIL DP L V + IR L Sbjct: 650 LPLIEIARNEADHILESDPGLLQVEHEPIRATL 682 >gi|167721134|ref|ZP_02404370.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei DM98] gi|167825726|ref|ZP_02457197.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei 9] Length = 433 Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 188/417 (45%), Positives = 266/417 (63%), Gaps = 10/417 (2%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 +PF+ T +QE + +I D++Q + M R+LQGDVGSGKT+VA +A A A++AG QA +MA Sbjct: 1 MPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQAALMA 60 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P ILA+QH ++ + + + V + G++ +R ALE A G A ++IGTHA+ QD Sbjct: 61 PTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTHAMIQD 120 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLVLTS 439 ++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRTL +T Sbjct: 121 TVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRTLAMTY 180 Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499 D+D+S I E P GR PI T ++ R DEVI R++ G++ YW+CP IEE + Sbjct: 181 YADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEESETLQ 240 Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 ++ VE + +L + ++HGR++ +K +VMD+F +LL+ATTVIEVG+DV Sbjct: 241 LQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEVGVDVP 300 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618 +AS+++IE+AE FGLAQLHQLRGRVGRG S C+L+Y PLS RL ++ T DGF Sbjct: 301 NASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRETTDGF 360 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 IA DL+ R GE LG +QSG A E L+E AR A ++ P++ + Sbjct: 361 EIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEVVA 417 >gi|262037471|ref|ZP_06010931.1| ATP-dependent DNA helicase RecG [Leptotrichia goodfellowii F0264] gi|261748506|gb|EEY35885.1| ATP-dependent DNA helicase RecG [Leptotrichia goodfellowii F0264] Length = 691 Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 245/657 (37%), Positives = 364/657 (55%), Gaps = 32/657 (4%) Query: 7 NPLFAPLSTFR--GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64 N LF L F+ GVGK + L+K G DL ++ P ++ D+ ISEI Sbjct: 5 NLLFKSLEEFKIKGVGK---VALNKFNKLGVYT---LYDLFYFFPRAYEDKANSKNISEI 58 Query: 65 SEERIVTITGYISQHSSFQLQKRRP-YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123 E V I G + + ++ R ++ +L D TG I L++F +KN G ++ Sbjct: 59 LPEEFVAIKGTVVNAVNQYIKSGRTMFRAMLRDETGIIELVWF--NNRFIKNSIKIGDEL 116 Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQ-----DVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 V GK+K+ + MV+P Y S + I +Y L + +KI+ EA Sbjct: 117 QVYGKVKRAA-KFQMVNPEYKKIQSDGMIRGEARHEQILPIYPSTASLRQEAIRKIVNEA 175 Query: 179 LSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237 L +L E I +DLL+K S S EA IH P + + A++R +E+L + Sbjct: 176 LLDYGYLLQENIPEDLLKKGSLISRKEAILNIHFPEEFE---KKEKAKKRFMIEEILLLE 232 Query: 238 IALLLMRKQFKKEIGIPINVEG--KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 + +L R + KE +E K+ K + ++ + TK+Q+ I +I +++ + Sbjct: 233 MGILQNRFEMDKENNNIYELEDNKKLVSKFIESLEYELTKAQKKVISEIYKELKSGKIVN 292 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VALI + E Q VIMAP ILA QHY I + + VE++ Sbjct: 293 RLIQGDVGSGKTIVALIMLLYMAENSYQGVIMAPTEILATQHYLGIVDIFNDLDVRVELL 352 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 TG++ R K L I +G I+IGTHAL ++ + + L L+++DEQHRFGV QR L Sbjct: 353 TGSVKGKKREKLLSEIENGLVDIVIGTHALIENDVVFKNLGLIVIDEQHRFGVVQRKLLR 412 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII----PINRIDEV 471 +K + ++++M+ATPIPR+L LT GD+D+S I E P+GR PIKT I N++ Sbjct: 413 EKGSIANLIVMSATPIPRSLALTIYGDLDVSIIDELPSGRMPIKTKWIRDLDEKNKMYNF 472 Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530 IER + EG++ Y + P IEE + N +S + F E F++ + +IHGR + +K Sbjct: 473 IER---KIKEGRQVYVVSPLIEESETLNVKSAQQTFEEYSEIFSNRRLGLIHGRQNYKEK 529 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 + VM FK +LI+TTVIEVG++V +ASI++I +A+ FGL+ LHQLRGRVGRG+ S Sbjct: 530 QEVMRKFKKHEIDILISTTVIEVGVNVPNASIMVIRDAQRFGLSSLHQLRGRVGRGKYQS 589 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 C L + S RL V++ T DGF IAEEDLK R GEILG +QSG+ ++ Sbjct: 590 YCFLESETD-NDLSMKRLQVMEKTTDGFKIAEEDLKLRNSGEILGTRQSGVSDMVLT 645 >gi|184153750|ref|YP_001842091.1| ATP-dependent DNA helicase RecG [Lactobacillus reuteri JCM 1112] gi|227363189|ref|ZP_03847323.1| DNA helicase RecG [Lactobacillus reuteri MM2-3] gi|325682706|ref|ZP_08162222.1| DNA helicase RecG [Lactobacillus reuteri MM4-1A] gi|183225094|dbj|BAG25611.1| ATP-dependent DNA helicase RecG [Lactobacillus reuteri JCM 1112] gi|227071795|gb|EEI10084.1| DNA helicase RecG [Lactobacillus reuteri MM2-3] gi|324977056|gb|EGC14007.1| DNA helicase RecG [Lactobacillus reuteri MM4-1A] Length = 690 Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 230/667 (34%), Positives = 367/667 (55%), Gaps = 22/667 (3%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP-KISEI 64 L L ++ +GVG K ++ + DLL Y+P+ + D + P I Sbjct: 13 LRSLTDSVANLKGVGPK------RVADLATLGIDTIEDLLTYYPTRYND--FTPTDIESA 64 Query: 65 SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKI 123 +++ +T+ G + R ++ G E+ + F+ + + K + +++ Sbjct: 65 KDKQKITLQGVVVSEPLLVRYGYRRNRLTFRMQVGNEVVIATFFNQPYIKKQIELN-QQV 123 Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183 TV GK + ++ + + D N AVY++ + ++ + I +A Sbjct: 124 TVMGKWDAPRRQV--TGNKLLKEKADDRNE--FGAVYAVNKHIRQNVLQSFIRQAYEEYA 179 Query: 184 -VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 ++P ++ + + Q+ + IH P+ AR AY+E Q+ L Sbjct: 180 NIIPTYLPETIRQRYRLMDRRQMIREIHFPQTQA---TAKAARRTAAYEEFFLFQLRLQA 236 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R+ ++E G I ++ + +PF T +Q+ + +I +DM Q +M R+LQGDV Sbjct: 237 IRRAHRQEDGERILYHNDELKEFIGGLPFELTDAQKRVVNEICRDMRQPYQMNRLLQGDV 296 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKT+VA IA+ AA+ AG QA +MAP ILA QH + + K + T + V ++TG++ Sbjct: 297 GSGKTIVAAIAIYAAITAGYQAALMAPTEILAGQHAKKLAKIFEGTHVQVALLTGSLTAK 356 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 R+ L + G ++I+GTHAL QD ++Y L LVI DEQHRFGV QR +L +K P Sbjct: 357 QHRELLTAMKRGDVNLIVGTHALIQDGVEYANLGLVITDEQHRFGVNQRQQLREKGEHPD 416 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 VL MTATPIPRTL +T+ G++D+S I + PAGRKPI+T + N+ I L+ L +G Sbjct: 417 VLAMTATPIPRTLAITNYGEMDVSIIDQLPAGRKPIQTKWLQSNQHAAAIHFLREQLKQG 476 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNG 540 +AY + P IEE + ++ + +N L + + ++HGRM +K+ M FK+G Sbjct: 477 AQAYVVSPLIEESAALDVQNATDLYNQLSADLEPAYKVGLLHGRMGTEEKDEAMRQFKSG 536 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L+ATTVIEVG+D +A++++I +A+ FGLAQLHQLRGRVGRG S C+L+ P Sbjct: 537 ELQVLVATTVIEVGVDNPNATVMVIYDADRFGLAQLHQLRGRVGRGSRQSYCLLIADPKT 596 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + R+ + T+DGF IAE+DLK R G++LG KQSGMP+F + P +L+IAR Sbjct: 597 DEGK-ARMKTMVATDDGFKIAEQDLKLRGSGDVLGKKQSGMPEFKVGDPVADLKMLQIAR 655 Query: 661 KDAKHIL 667 DA ++L Sbjct: 656 ADAGNLL 662 >gi|167847212|ref|ZP_02472720.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei B7210] Length = 442 Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 188/417 (45%), Positives = 266/417 (63%), Gaps = 10/417 (2%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 +PF+ T +QE + +I D++Q + M R+LQGDVGSGKT+VA +A A A++AG QA +MA Sbjct: 10 LPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQAALMA 69 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P ILA+QH ++ + + + V + G++ +R ALE A G A ++IGTHA+ QD Sbjct: 70 PTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTHAMIQD 129 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLVLTS 439 ++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRTL +T Sbjct: 130 TVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRTLAMTY 189 Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499 D+D+S I E P GR PI T ++ R DEVI R++ G++ YW+CP IEE + Sbjct: 190 YADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEESETLQ 249 Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 ++ VE + +L + ++HGR++ +K +VMD+F +LL+ATTVIEVG+DV Sbjct: 250 LQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEVGVDVP 309 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618 +AS+++IE+AE FGLAQLHQLRGRVGRG S C+L+Y PLS RL ++ T DGF Sbjct: 310 NASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRETTDGF 369 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 IA DL+ R GE LG +QSG A E L+E AR A ++ P++ + Sbjct: 370 EIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEVVA 426 >gi|47570289|ref|ZP_00240938.1| ATP-dependent DNA helicase RecG [Bacillus cereus G9241] gi|47553053|gb|EAL11455.1| ATP-dependent DNA helicase RecG [Bacillus cereus G9241] Length = 527 Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 197/502 (39%), Positives = 311/502 (61%), Gaps = 18/502 (3%) Query: 171 FKKIIVEAL-----SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR 225 ++ I +AL S + VLP+ + L + K P EA +H P +D + AR Sbjct: 1 MRRFIAQALKEYGDSIVEVLPDGL---LSRYKLLPRY-EALRALHFPTGQEDLK---QAR 53 Query: 226 ERLAYDELLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284 R Y+E Q+ + +RK + + G + + Q+ + +PF T +Q + +I Sbjct: 54 RRFVYEEFFLFQLKMQTLRKMERENSKGTKKEIPSEELQEFIDALPFPLTGAQRRVVDEI 113 Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344 ++DM+ RM R+LQGDVGSGKT+VA I + AA A Q +M P ILA+QHY+ + + Sbjct: 114 MKDMTSPYRMNRLLQGDVGSGKTVVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAET 173 Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404 + + VE++T ++ RR+ L ++ G+ I++GTHAL QD + +++L LVI DEQH Sbjct: 174 FSHFGMKVELLTSSVKGVRRREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQH 233 Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464 RFGV QR L +K +P VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T Sbjct: 234 RFGVAQRRVLREKGESPDVLFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAK 293 Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIH 522 + +D V+ ++ + +G++AY ICP IEE ++ + ++ ++ + L H+ + ++H Sbjct: 294 HDMLDRVLGFVEKEIKKGRQAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMH 353 Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582 GR+S +KE +M F ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGR Sbjct: 354 GRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGR 413 Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642 VGRG E S C+L+ P S+ R+ ++ T DGF+++E+DL+ R G+ G KQSG+P Sbjct: 414 VGRGSEQSYCLLIADPK-SETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLP 472 Query: 643 KFLIAQPELHD-SLLEIARKDA 663 +F +A +HD LE AR+DA Sbjct: 473 EFKVADM-VHDYRALETARQDA 493 >gi|293402242|ref|ZP_06646380.1| ATP-dependent DNA helicase RecG [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304349|gb|EFE45600.1| ATP-dependent DNA helicase RecG [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 669 Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 219/645 (33%), Positives = 363/645 (56%), Gaps = 23/645 (3%) Query: 42 IDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGT 98 +DLL Y+P + +P+ E+RI +++ +L+ ++ +K+L + Sbjct: 25 MDLLTYYPFRYESVETKPRKEWQKEDRIALEGVILNRARVIRLKGKQSVTKFKLLYEEE- 83 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 E+ + F R + F G+ IT+ K + +R+ + ++ Q FP Sbjct: 84 -ELDIAIFNRP---WISAFTVGKTITLIAKYEG-GSRMTALQYNFQPLQEQLGIFP---- 134 Query: 159 VYSLPTGLSVDLFKKIIVEA-LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 VY++ G+S +K I +A L++ + E++ + LQK S ++A IH+P K+ Sbjct: 135 VYNVKEGISQKDIRKYIDKAWLAQQESIKEFLPMEYLQKYRLISRSQALYFIHHP---KN 191 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKS 276 E + L Y+E L QI + ++ Q K+ + G + + + + + FS T+ Sbjct: 192 MEAVKQSLRHLKYEEFLKFQITMQALKAQEKEVVHGHEKRFDNEEVMDLQKTLAFSLTED 251 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q I++IL D+ + M R++QGDVG GKTLVA M A V A QA +AP ILA+Q Sbjct: 252 QIKTIEEILADLKSDHIMYRMVQGDVGCGKTLVAAFGMYACVLAHKQAAFLAPTEILAKQ 311 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 H +KK + +I VE++ ++ ++ LER+A + I++GTHALFQ+ ++++ L Sbjct: 312 HGNNLKKIFHDYEIQVEVLYASLKTQEKKDILERLARNEIDILVGTHALFQEGVEFHDLG 371 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 +V+ DEQHRFGV QR K+ +K LLM+ATPIPRTL ++ GD+D+S I P+GR+ Sbjct: 372 MVVADEQHRFGVAQRKKMLEKGDKVDFLLMSATPIPRTLAISLYGDMDVSTIQTLPSGRQ 431 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 I T ++ + +++ + + EG + Y +CP IE+ ++ R+V + + + Sbjct: 432 KITTKLVHARSMSSILDFVLEKIDEGNQCYVVCPAIEKNEDYEIRNVTDIYQGMQASLGR 491 Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 I ++HG+MS +K++VM +F G ++L++TTVIEVG+DV +A+I++I +A FGL+ Sbjct: 492 RYQIGLLHGKMSAQEKDAVMKAFVEGDLQILVSTTVIEVGVDVANANIMVIYDAHRFGLS 551 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 Q+HQLRGRVGRG + C LL +S RL V + T DGF IA DL R G+IL Sbjct: 552 QIHQLRGRVGRGSQPGYCFLLSDSK-DPDSLQRLKVCEKTNDGFAIARYDLALRGPGDIL 610 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT--QDPDLTSVR 677 G +QSG+P F++ ++LE+AR+DA+ +L DP ++ Sbjct: 611 GTRQSGVPGFILGDVIQDANILEVAREDAQALLKHIHDPGYEQIK 655 >gi|167912445|ref|ZP_02499536.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei 112] Length = 438 Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 188/417 (45%), Positives = 266/417 (63%), Gaps = 10/417 (2%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 +PF+ T +QE + +I D++Q + M R+LQGDVGSGKT+VA +A A A++AG QA +MA Sbjct: 6 LPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQAALMA 65 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P ILA+QH ++ + + + V + G++ +R ALE A G A ++IGTHA+ QD Sbjct: 66 PTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTHAMIQD 125 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLVLTS 439 ++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRTL +T Sbjct: 126 TVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRTLAMTY 185 Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499 D+D+S I E P GR PI T ++ R DEVI R++ G++ YW+CP IEE + Sbjct: 186 YADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEESETLQ 245 Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 ++ VE + +L + ++HGR++ +K +VMD+F +LL+ATTVIEVG+DV Sbjct: 246 LQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEVGVDVP 305 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618 +AS+++IE+AE FGLAQLHQLRGRVGRG S C+L+Y PLS RL ++ T DGF Sbjct: 306 NASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRETTDGF 365 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 IA DL+ R GE LG +QSG A E L+E AR A ++ P++ + Sbjct: 366 EIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEVVA 422 >gi|226305911|ref|YP_002765871.1| ATP-dependent DNA helicase RecG [Rhodococcus erythropolis PR4] gi|226185028|dbj|BAH33132.1| ATP-dependent DNA helicase RecG [Rhodococcus erythropolis PR4] Length = 758 Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 241/748 (32%), Positives = 391/748 (52%), Gaps = 90/748 (12%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRP 59 M + L PL R +GKK + L + A E R + DLL ++P + Sbjct: 1 MLEELMATLADPLD--RLLGKKTADALDE------AFEIRTVEDLLRHYPHRYASAGKEL 52 Query: 60 KISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNV 116 E E +TI ++ + ++ K RP ++L L + + + FF + +++V Sbjct: 53 AEKEPPEGEHITIIARVASAAVVKM-KNRPGQMLRVSLATDSQTVDVTFF--NPQKVRHV 109 Query: 117 FFEGRKITVTGKIKKLKNRIIMVHPHYIFH-----NSQDVNFPLIE----------AVYS 161 G + +G +K + + + HP Y+ +D PL A + Sbjct: 110 IKPGVRAMFSGTVKYFRGKWSLTHPSYLILPEPRVGEEDSVVPLASIKGAGDLAGLARAN 169 Query: 162 LPTGLSVDL--FKKIIV-------------------EALSRLPVLPEWIEKDLLQKKSFP 200 G +DL F + ++ + L +L + E + + + F Sbjct: 170 QDPGAELDLSVFDRALIPLYPATREVESWTIMRCVRQVLDQLDPIEEPLPAETRAEHGFI 229 Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN--VE 258 + EA +H P +D E + ++RL +DE L+ Q+ +L MR+ E P V Sbjct: 230 GLDEALRTVHLPDTKEDIERS---QDRLRFDEALSLQL-VLAMRRHDNSERVAPACAPVA 285 Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318 G IA + +PF+ T+ Q++ ++I D+++ + M R+LQG+VGSGKT+VAL AM V Sbjct: 286 GGIADQFEEMLPFTLTEGQQAVAEEISSDLARPHPMSRLLQGEVGSGKTIVALRAMLQVV 345 Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITGNMPQAHRRKA 367 +AG Q ++AP +LA QH ++K + + ++TG++P A +R A Sbjct: 346 DAGYQCALLAPTEVLANQHARSLRKMMGPLAAGGELGSAEHSTRIALLTGSLPVAAKRAA 405 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVL 424 L G A I+IGTHAL QD+++++ L +V+VDEQHRFGV+QR +L +A +PH+L Sbjct: 406 LLEAVTGDAGIVIGTHALIQDNVEFFNLGMVVVDEQHRFGVEQRDQLRSRAREGLSPHLL 465 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLS 480 +MTATPIPRT+ +T LGD+++S + E P GR PIK+ ++P + +D ER++ ++ Sbjct: 466 VMTATPIPRTIAMTVLGDLEVSTLRELPRGRTPIKSSVVPAKQKPQWVDRAWERIREDVA 525 Query: 481 EGKKAYWICP------------QIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMS 526 G++AY +C Q E+K+ +S V+ F L + + ++HGR+ Sbjct: 526 AGRQAYVVCSRIGDGEQGAGEDQFTEEKQPETKSAVDVFEELSSGPLADLRVGLLHGRLP 585 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 +K+ VM +F G +L+ TTV+EVG+DV +A++++I +AE FG++QLHQLRGRVGRG Sbjct: 586 SDEKDVVMSAFNVGDIDVLVCTTVVEVGVDVPNATVMVIVDAERFGVSQLHQLRGRVGRG 645 Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL- 645 + CIL+ +Y RLS + T DGF +A+ DL R+EG+ILG QSG L Sbjct: 646 KHQGLCILVTGSNPGGPAYERLSAVAATNDGFELAQLDLATRREGDILGAAQSGTTSNLR 705 Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDL 673 + H +LE AR+ A+ I+ DP L Sbjct: 706 LLSLMAHGDILESAREFAQGIVDSDPSL 733 >gi|312984225|ref|ZP_07791571.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus CTV-05] gi|310894444|gb|EFQ43520.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus CTV-05] Length = 678 Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 219/673 (32%), Positives = 368/673 (54%), Gaps = 26/673 (3%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 N LFAP++ +GVG K + L G+ DLLFY P + + P + +I + Sbjct: 4 NALFAPVTDLKGVGTKTTAAL------GSLGIYSIYDLLFYFPFRYDELQTLP-LDQIMD 56 Query: 67 ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122 + V + G ++ S F +K R +K+ ++ ++ ++ F+ + LKN G++ Sbjct: 57 GQKVMLKGIVATEAFVSRFGYKKTRLSFKMRIDH---DVIMVNFFNQP-WLKNKIEIGQE 112 Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + + GK + + ++ D P+ + VDL I + + + Sbjct: 113 VAIYGKYNVARQSLTAFK--FVAAKENDSGMAPIYPVNRHVKQKKLVDLINVAIDDFIDQ 170 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 + + + + L Q+ +H+P+ + + E A+ + E ++ L Sbjct: 171 VQ---DIVSEKLRQEYRLLKDQVIIEKMHHPKNSHEAEL---AKRSAIFREFFIFELQLA 224 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L+ + K++G + ++ +++PF + Q+ + +I DM +M R+LQGD Sbjct: 225 LLTRNDGKQMGYAKKYDLTEIAQLTKSLPFELSDDQKHVVNEIFADMHSDGQMRRLLQGD 284 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VA+ A+ AA+ AG QA +M P ILA QH++ I + + + V ++TGN Sbjct: 285 VGSGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTKT 344 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 R + + G +++IGTHAL QDS+ + KL LVI+DEQHRFGV QR L K P Sbjct: 345 LERCEIYRELTDGTINVVIGTHALIQDSVIFKKLGLVIIDEQHRFGVGQRQALINKGDQP 404 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 +L MTATPIPRTL LT GD+ +S+I PAGRKPI + +++ EV +++ L++ Sbjct: 405 DILAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISTWKTSSQMKEVYRQMQEQLNQ 464 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540 G + Y + P I E + + ++ E L F + + ++HG+M K+ +M +F G Sbjct: 465 GFQIYAVTPLITESETLDLKNAEELHEKLSHDFPNHKVVLLHGQMPGAQKDEIMTAFAAG 524 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+ S C+ L P Sbjct: 525 EIDILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGQTQSYCVFLADPK- 583 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + + R+ ++ +T DGF +AEEDLK R EG++ G QSG+P+F + + + L +A+ Sbjct: 584 TDSGKARMKIIASTNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYNTLVVAQ 643 Query: 661 KDAKHILTQDPDL 673 K+A+ ++ DPDL Sbjct: 644 KEARALVAADPDL 656 >gi|293376126|ref|ZP_06622374.1| ATP-dependent DNA helicase RecG [Turicibacter sanguinis PC909] gi|325841635|ref|ZP_08167412.1| ATP-dependent DNA helicase RecG [Turicibacter sp. HGF1] gi|292645253|gb|EFF63315.1| ATP-dependent DNA helicase RecG [Turicibacter sanguinis PC909] gi|325489913|gb|EGC92261.1| ATP-dependent DNA helicase RecG [Turicibacter sp. HGF1] Length = 681 Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 226/639 (35%), Positives = 370/639 (57%), Gaps = 27/639 (4%) Query: 43 DLLFYHPSSF-----IDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDG 97 DLL Y P + ID H+ +I+ E V IT Q+ +++ R + +L+N Sbjct: 32 DLLEYFPYRYENYELIDIHHAMHEEKITVEAKV-ITACSVQYYG-KMKARMSFNVLVNH- 88 Query: 98 TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157 E+ + + + + LKN ITVTGK R ++ I +++ IE Sbjct: 89 --EVVKVVVFNR-QFLKNQLKLDTLITVTGKWDL--GRKVITATDIIIGSAEGRG---IE 140 Query: 158 AVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216 VYSL + FKKI+ A + ++ + + DL Q S +A + H P K Sbjct: 141 PVYSLKE-IPTKTFKKIVKAAYEQFHSLINDDLPLDLQQSYRLISYKDAVSFAHFP---K 196 Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTK 275 + E R+ Y+ELL Q+ + +R Q K E +G + ++ + +PF T+ Sbjct: 197 NKEQVRQVERRIKYEELLKFQLKIQYLRHQTKHEKVGANKCFDEMKVEQFIHQLPFQLTE 256 Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 +Q + + +I D+ RM R+LQGDVGSGKT+VA +++ + AG Q +M P IL Q Sbjct: 257 AQLTVLSEIKTDLMSPTRMNRLLQGDVGSGKTVVAAVSLFMTMLAGFQTALMVPTEILGQ 316 Query: 336 QHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394 QHY+ F + ++ ++ +E ++ ++ RR+ LE++ G+ ++++GTHA+ Q + + Sbjct: 317 QHYKSFCELFSPFKEVNIEFLSSSVKGKRRREILEKLRQGEINLLVGTHAIIQQEVVFQN 376 Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454 L LVI DEQHRFGV QR L +K VL+MTATPIPRTL +++ GD+D+S IT+ P G Sbjct: 377 LGLVITDEQHRFGVNQRKMLREKGEFVDVLMMTATPIPRTLAISAFGDMDVSTITQMPKG 436 Query: 455 RKPIKTVIIPINRIDEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 RKP++T +I ++D + ++ +LS+G++AY I P IEE + + ++ VE ++ H Sbjct: 437 RKPVETYLIDSGKLDRALNFIQDEILSKGQQAYVITPLIEESEAMDVQNAVEVYHLWQHH 496 Query: 514 FT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 F + + ++HGR+S +K++VMD F ++LI+TTVIEVG++V +A++++I +A F Sbjct: 497 FQGRAKVGLMHGRLSQAEKDAVMDDFVANRSQILISTTVIEVGVNVPNANLMLIYDAHRF 556 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631 GL+QLHQLRGRVGRG E + C+L+ ++ S RL+++ T +GF I+E DLK R G Sbjct: 557 GLSQLHQLRGRVGRGSEQAYCLLMSDIK-NEASLERLTIMTQTTNGFEISEADLKLRGPG 615 Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670 + G KQSG+P F +A ++L++A +DA +++ D Sbjct: 616 DFFGEKQSGVPVFKMADLVQDFNILQVAMQDAYRLVSSD 654 >gi|167920400|ref|ZP_02507491.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei BCC215] Length = 453 Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 188/417 (45%), Positives = 266/417 (63%), Gaps = 10/417 (2%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 +PF+ T +QE + +I D++Q + M R+LQGDVGSGKT+VA +A A A++AG QA +MA Sbjct: 21 LPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQAALMA 80 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P ILA+QH ++ + + + V + G++ +R ALE A G A ++IGTHA+ QD Sbjct: 81 PTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTHAMIQD 140 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLVLTS 439 ++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRTL +T Sbjct: 141 TVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRTLAMTY 200 Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499 D+D+S I E P GR PI T ++ R DEVI R++ G++ YW+CP IEE + Sbjct: 201 YADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEESETLQ 260 Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 ++ VE + +L + ++HGR++ +K +VMD+F +LL+ATTVIEVG+DV Sbjct: 261 LQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEVGVDVP 320 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618 +AS+++IE+AE FGLAQLHQLRGRVGRG S C+L+Y PLS RL ++ T DGF Sbjct: 321 NASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRETTDGF 380 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 IA DL+ R GE LG +QSG A E L+E AR A ++ P++ + Sbjct: 381 EIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEVVA 437 >gi|260437137|ref|ZP_05790953.1| ATP-dependent DNA helicase RecG [Butyrivibrio crossotus DSM 2876] gi|292810449|gb|EFF69654.1| ATP-dependent DNA helicase RecG [Butyrivibrio crossotus DSM 2876] Length = 677 Score = 357 bits (916), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 227/655 (34%), Positives = 359/655 (54%), Gaps = 31/655 (4%) Query: 43 DLLFYHPSSFIDRHYRP-KISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGT 98 DL+ +P ++ D + P I+ I E I + Y + +L++ YKIL + D Sbjct: 27 DLMELYPRAY-DSYDEPVNIAAIDECGIYAV--YAAVDRPPELKQNGRYKILTVMVRDEA 83 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 G + + ++ L++ G + GK+ + + M P + + ++ Sbjct: 84 GSMLRITWF-NMPFLRSRLRNGYRYIFRGKVAIKGSLVFMEQPSIYTVDEYYIRQSSMQP 142 Query: 159 VYSLPTGLSVDLFKKII---VEALSRLPVLPEWI--EKDLLQKKSFPSIAEAFNIIHNPR 213 VY L GL+ ++ K + E+ LPEWI + DL+ +K +A IH P Sbjct: 143 VYPLTAGLTNNMVIKAVKQCFESGGYEEFLPEWILTKNDLIDEK------KAHYAIHFP- 195 Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 KD + AR+R+ +DE + + E + E A +L+N+P+S Sbjct: 196 --KDRNELAQARKRIIFDEFFLFTTNIRCAKSARLNEDNLYRISESGEALHVLKNLPYSL 253 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T +Q+ +IL DM M R++QGDVGSGKT++A +AM AG Q+++MAP +L Sbjct: 254 TGAQKKVYSEILNDMGSDKTMNRLIQGDVGSGKTILAFLAMINTAAAGWQSILMAPTEVL 313 Query: 334 AQQHYEFIKKYTQNTQI--IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391 A+QHYE +K+ ++ ++TG + +A +R A E+I G+A IIGTHAL D ++ Sbjct: 314 ARQHYEALKELIDKNRLDFTCVLLTGALTEAKKRDAKEKITSGEADFIIGTHALITDDVE 373 Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451 + LVI DEQHRFGV+QR L++K PH+++M+ATPIPR+L + GD+DIS + EK Sbjct: 374 FKNPALVITDEQHRFGVRQRENLSRKGETPHIIVMSATPIPRSLAIILYGDLDISIVDEK 433 Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK-KESNFRSVVERFNSL 510 PA R P+K ++ + + + + + +G +AY IC EE +SN +VV+ L Sbjct: 434 PADRLPVKNCVVDDSYRTKAYKFISDEIKKGHQAYIICAMAEESDNDSNLENVVDFSKKL 493 Query: 511 HEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 E + I +HG+M +K +MD F +L++TTV+EVGI+V +A+++++ NAE Sbjct: 494 KEAMPETRIEYLHGKMKPAEKNRIMDEFAKRNTDILVSTTVVEVGINVPNATVMMVINAE 553 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQ 627 FGLA LHQLRGRVGRG+E S CI + +KN T RL++LK + DGF I+E+DLK Sbjct: 554 RFGLAGLHQLRGRVGRGKEQSYCIFESN---TKNKVTKERLNILKESNDGFYISEQDLKL 610 Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682 R G++LG +QSG F I S+L++A + ++ +D +L IR Sbjct: 611 RGPGDMLGTRQSGDMGFAIGNIYSDASILKMAADTSSILIEKDKELMLEENSGIR 665 >gi|24216644|ref|NP_714125.1| ATP-dependent DNA helicase RecG [Leptospira interrogans serovar Lai str. 56601] gi|45658972|ref|YP_003058.1| ATP-dependent DNA helicase RecG [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24197981|gb|AAN51143.1| ATP-dependent DNA helicase RecG [Leptospira interrogans serovar Lai str. 56601] gi|45602217|gb|AAS71695.1| ATP-dependent DNA helicase protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 724 Score = 357 bits (916), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 225/700 (32%), Positives = 380/700 (54%), Gaps = 58/700 (8%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 N L P++ +GVG + L+ I DLL + P ++DR+ + + Sbjct: 13 NGLLLPVTVIKGVGPSKAAALASI------GIDTLQDLLNFFPRRYLDRNLTDNVLLKTG 66 Query: 67 ERIVTITGYISQHSSFQLQKRRPYKILLNDGT--GEITLLFFYRKTEMLKNVFFEGRKIT 124 E + I I + L + ++++ T E + F+R + +F G + Sbjct: 67 ETVTLIVEVIDAY----LAHGKKSRLVVGTKTRNNERISIVFFRGVNFFQKIFQPGTTLV 122 Query: 125 VTGKIKKLKNRIIMVHPHY-IFHNSQDVNFP------------------------LIEAV 159 TGK++ + ++HP Y I ++ +P +I A Sbjct: 123 ATGKLEYFRG-FQLIHPDYEILTSAIKTTYPISSTGSKKKKQEQEPEEELSELPEMIHAG 181 Query: 160 YSLP----------TGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNI 208 +P GL F+KI+ AL +L +PE + ++++++ E++ Sbjct: 182 RIIPLYPSGEVLKSEGLDSRGFRKILYSALEKLKGKIPEILPNEIVKRRGLILREESYRE 241 Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI--PINVEGKIAQKIL 266 IH P + A+ RL Y+EL + + +K+ +K + P+ E + A K+ Sbjct: 242 IHFPTDENSLD---TAKYRLKYEELFYFNLLIEHKKKEREKIKRVLWPLP-ESETANKVR 297 Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 +N+PF T+ Q SA++ I + +++ + +LQGDVGSGKTLVAL+ ++ Q + Sbjct: 298 KNLPFQLTEDQNSALQKIKELTNKEQPIAVLLQGDVGSGKTLVALLTALRYIDNQIQVCM 357 Query: 327 MAPIGILAQQHYEFIKKYTQNTQII-VEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +AP ILA+QHY+ I + N + +E++ G P+ +R + L RI G +IGTH++ Sbjct: 358 VAPTEILARQHYQTILSFLGNMPFLGIELLVGKEPKKNRYEKLYRIKKGDTLFVIGTHSV 417 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445 FQ+ + + +L LVI+DEQH+FGV QR L K P +L MTATPIPRTL LT GD+D+ Sbjct: 418 FQEDVYFSELGLVIIDEQHKFGVDQRETLRSKGKNPDILAMTATPIPRTLCLTLYGDLDL 477 Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I KP GR PI+T +R + + + ++ +S G++ Y + P +EE ++ + +S +E Sbjct: 478 LTIKSKPKGRMPIQTKWFQEDRREGIYKSIRKYVSSGRQCYIVYPLVEESEKVDLKSCIE 537 Query: 506 RFNSL-HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + L HE F + ++HG+M +K+ VM F ++L++TTVIEVGIDV +++++ Sbjct: 538 AYEYLKHEIFPDFEVGLVHGKMEVEEKDRVMREFSKNRIQILVSTTVIEVGIDVPNSTVM 597 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623 +IE+A+ FG++QLHQLRGRVGRG++ S CIL+ +++++ RL + N DGF ++E Sbjct: 598 VIEHADRFGISQLHQLRGRVGRGDQESFCILMTDSKVTEDAKVRLEAMVNFSDGFALSEI 657 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 DL+ R GE++G++QSG+P F IA +L+E+ R+DA Sbjct: 658 DLQLRGPGELMGVRQSGLPDFKIADLRKDSNLIELTREDA 697 >gi|167895798|ref|ZP_02483200.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei 7894] Length = 441 Score = 357 bits (916), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 188/417 (45%), Positives = 266/417 (63%), Gaps = 10/417 (2%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 +PF+ T +QE + +I D++Q + M R+LQGDVGSGKT+VA +A A A++AG QA +MA Sbjct: 9 LPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQAALMA 68 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P ILA+QH ++ + + + V + G++ +R ALE A G A ++IGTHA+ QD Sbjct: 69 PTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTHAMIQD 128 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLVLTS 439 ++++ +L LVIVDEQHRFGV+QRL L KA PH L+M+ATPIPRTL +T Sbjct: 129 TVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRTLAMTY 188 Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499 D+D+S I E P GR PI T ++ R DEVI R++ G++ YW+CP IEE + Sbjct: 189 YADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEESETLQ 248 Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 ++ VE + +L + ++HGR++ +K +VMD+F +LL+ATTVIEVG+DV Sbjct: 249 LQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEVGVDVP 308 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618 +AS+++IE+AE FGLAQLHQLRGRVGRG S C+L+Y PLS RL ++ T DGF Sbjct: 309 NASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRETTDGF 368 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 IA DL+ R GE LG +QSG A E L+E AR A ++ P++ + Sbjct: 369 EIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEVVA 425 >gi|27464919|gb|AAO16243.1| ATP-dependent DNA helicase RecG [Staphylococcus capitis] Length = 682 Score = 357 bits (916), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 220/663 (33%), Positives = 369/663 (55%), Gaps = 28/663 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L +G+G K L ++ N N DL+ Y P+ + D +++ ++ VT+ Sbjct: 13 LDKIKGIGPKRLTILEEL----NINTVE--DLVLYLPTRYEDNTV-IDLNQAEDQSTVTV 65 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITL-LFFYRKTEMLKNVFFEGRKITVTGKIKK 131 G + + R K+ ++ I + + ++ T K G +TV GK + Sbjct: 66 QGEVYSTPAVAFFGRNKSKLTVHIMVNNIAVKVCLFQSTLFKKENELHG-TVTVKGKWNR 124 Query: 132 LKNRIIMVHPHYIFHNSQ----DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187 K I + + +F N Q DV +E VY + G+ + I +AL + + E Sbjct: 125 AKQEI---NGNRMFFNEQSPQDDVQ---LEPVYRIKEGIKQKQIRDNIRQALEDVTI-HE 177 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQ 246 W+ DL +K ++ +H+P KD + AR A+ EL ++ + L R + Sbjct: 178 WLSDDLREKYKLETLEYTLRTLHHP---KDKQSLLKARRTYAFTELFMFELRMQWLNRLE 234 Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 + I I+ + ++ + +PF T +Q++++ +I +D+ RM R+LQGDVGSGK Sbjct: 235 KSSDEAIEIDYDISKVKQFINRLPFELTDAQKASVNEIFRDLKAPIRMHRLLQGDVGSGK 294 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366 T+VA I M A AG Q+ +M P ILA+QH E + + +T + V ++TG++ RR Sbjct: 295 TVVAAICMYALKTAGYQSALMVPTEILAEQHAESLMELFGDT-MNVALLTGSVKGKKRRI 353 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426 LE++ +G +IGTHAL QD + + + LVI DEQHRFGV QR L +K +VL M Sbjct: 354 LLEQLENGSIDCLIGTHALIQDDVVFENVGLVITDEQHRFGVNQRQMLREKGAMTNVLFM 413 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486 TATPIPRTL ++ G++D+S I + P GRKPI T + ++V+ ++ L +G++AY Sbjct: 414 TATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITSWAKHEQYEQVLAQMTSELRKGRQAY 473 Query: 487 WICPQIEEKKE-SNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKL 544 ICP IE + + ++VV + SL +++ + + ++HG+++ +K+ VM F + + Sbjct: 474 VICPLIESSEHLEDVQNVVALYESLQQYYGADKVGLLHGKLTPDEKDDVMQRFSDKEIDI 533 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 L++TTV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E S C+L+ P ++ Sbjct: 534 LVSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETG 592 Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 R++++ T DGF ++E DL+ R G+ G+KQSG+P FL+A +LE+AR +A Sbjct: 593 IERMTIMTQTSDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANVVEDYRMLEVARDEAA 652 Query: 665 HIL 667 ++ Sbjct: 653 ELI 655 >gi|314933404|ref|ZP_07840769.1| ATP-dependent DNA helicase RecG [Staphylococcus caprae C87] gi|313653554|gb|EFS17311.1| ATP-dependent DNA helicase RecG [Staphylococcus caprae C87] Length = 682 Score = 357 bits (916), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 219/663 (33%), Positives = 369/663 (55%), Gaps = 28/663 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L +G+G K L ++ N N DL+ Y P+ + D +++ ++ VT+ Sbjct: 13 LDKIKGIGPKRLTILEEL----NINTVE--DLVLYLPTRYEDNTV-IDLNQAEDQSTVTV 65 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITL-LFFYRKTEMLKNVFFEGRKITVTGKIKK 131 G + + R K+ ++ I + F+ + + K + G +TV GK + Sbjct: 66 QGEVYSTPAVAFFGRNKSKLTVHIMVNNIAVKCVFFNQPYLKKKIELHG-TVTVKGKWNR 124 Query: 132 LKNRIIMVHPHYIFHNSQ----DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187 K I + + +F N Q DV +E VY + G+ + I +AL + + E Sbjct: 125 AKQEI---NGNRMFFNEQSPQDDVQ---LEPVYRIKEGIKQKQIRDNIRQALEDVTI-HE 177 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQ 246 W+ DL +K ++ +H+P KD + AR A+ EL ++ + L R + Sbjct: 178 WLSDDLREKYKLETLEYTLRTLHHP---KDKQSLLKARRTYAFTELFMFELRMQWLNRLE 234 Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 + I I+ + ++ + +PF T +Q++++ +I +D+ RM R+LQGDVGSGK Sbjct: 235 KSSDEAIEIDYDISKVKQFINRLPFELTDAQKASVNEIFRDLKAPIRMHRLLQGDVGSGK 294 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366 T+VA I M A AG Q+ +M P ILA+QH E + + +T + V ++TG++ RR Sbjct: 295 TVVAAICMYALKTAGYQSALMVPTEILAEQHAESLMELFGDT-MNVALLTGSVKGKKRRI 353 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426 LE++ +G +IGTHAL QD + + + LVI DEQHRFGV QR L +K +VL M Sbjct: 354 LLEQLENGSIDCLIGTHALIQDDVVFENVGLVITDEQHRFGVNQRQMLREKGAMTNVLFM 413 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486 TATPIPRTL ++ G++D+S I + P GRK I T + ++V+ ++ L +G++AY Sbjct: 414 TATPIPRTLAISVFGEMDVSSIKQLPKGRKSIITSWAKHEQYEQVLAQMTSELRKGRQAY 473 Query: 487 WICPQIEEKKE-SNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKL 544 ICP IE + + ++VV + SL +++ + + ++HG+++ +K+ VM F + + Sbjct: 474 VICPLIESSEHLEDVQNVVALYESLQQYYGADKVGLLHGKLTPDEKDDVMQRFSDKEIDI 533 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 L++TTV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E S C+L+ P ++ Sbjct: 534 LVSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETG 592 Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 R++++ T DGF ++E DL+ R G+ G+KQSG+P FL+A +LE+AR +A Sbjct: 593 IERMTIMTQTSDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANVVEDYRMLEVARDEAA 652 Query: 665 HIL 667 ++ Sbjct: 653 ELI 655 >gi|302537159|ref|ZP_07289501.1| ATP-dependent DNA helicase RecG [Streptomyces sp. C] gi|302446054|gb|EFL17870.1| ATP-dependent DNA helicase RecG [Streptomyces sp. C] Length = 735 Score = 357 bits (916), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 235/719 (32%), Positives = 374/719 (52%), Gaps = 76/719 (10%) Query: 42 IDLLFYHPSSFIDRHYRPKISEISE--ERIVTITGYISQ------HSSFQLQKRRPYKIL 93 +DLL ++P + +R ++++++ + VT+ ++ H S KR ++ Sbjct: 33 LDLLHHYPRRYAERGELTSLADLADQLDEHVTVVAQVADARLLTYHGSRGGGKR--LEVT 90 Query: 94 LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY---------- 143 + DG+G + L+FF G + GK+ + +++ + HP Y Sbjct: 91 ITDGSGRLQLVFFGAGVHKPHKELLPGSRAMFAGKVSRFNHKLQLAHPAYEPLGADASDR 150 Query: 144 ----IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSF 199 F N +P + S VD EA+ LP L + + Sbjct: 151 DAATAFANQLIPIYPACAKLESWKIAKCVDAVLPRAQEAVDPLP-------PALREGRGL 203 Query: 200 PSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE- 258 + EA IH P D E AR+RL +DE Q+AL R + + Sbjct: 204 VPLTEALLKIHRPATKADIE---DARQRLKWDEAFVLQVALARRRHADSQLPAVARRATP 260 Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318 G + + +PF+ T Q+ K+I D++ + M R+LQG+VGSGKTLVAL AM A V Sbjct: 261 GGLLDALDAKLPFTLTDGQQKVSKEIFDDLATSHPMHRLLQGEVGSGKTLVALRAMLAVV 320 Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKY-------------TQNTQIIVEIITGNMPQAHRR 365 ++GGQA ++AP +LAQQH+ I + Q T+++ ++TG+M A RR Sbjct: 321 DSGGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGSDQGTKVV--LLTGSMGTAARR 378 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVL 424 +AL + G+A ++IGTHAL +D +Q++ L LV+VDEQHRFGV+QR L K PH+L Sbjct: 379 QALLDLVTGEAGLVIGTHALIEDKVQFHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLL 438 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLS 480 +MTATPIPRT+ +T GD++ S + + PAGR PI T ++P + ER++ + Sbjct: 439 VMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIATHVVPARDKPHFLSRAWERVREEVE 498 Query: 481 EGKKAYWICPQIEE-------KKESNFRSVVERFNSLH-----EHFTS------SIAIIH 522 G +AY +CP+I + KK+++ E+ L E T S+ ++H Sbjct: 499 NGHQAYVVCPRIGDGEDDPKNKKKASAEDEAEKRPPLAVLEIAEQLTRGPLAGLSVEVLH 558 Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582 GRM DK+ VM F G K+L+ATTVIEVG++V ++++++I +A+ FG++QLHQLRGR Sbjct: 559 GRMDPADKDDVMRRFAAGEVKVLVATTVIEVGVNVPNSTVMVIMDADRFGVSQLHQLRGR 618 Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642 VGRG C+L+ + + RL+ + T DGF ++ DL+QR+EG++LG QSG+ Sbjct: 619 VGRGSAPGLCLLVSEMHEASPARARLAAVAATLDGFELSRIDLEQRREGDVLGQAQSGVR 678 Query: 643 KFLIAQPELHD-SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 L + D ++ AR++A ++ DP+L + G +R L E Q++ G Sbjct: 679 SSLRMLAVIDDEEVIAQAREEATRVVAADPELEHLPG--LRTALDALLDAEREQYLEKG 735 >gi|110801740|ref|YP_699017.1| ATP-dependent DNA helicase RecG [Clostridium perfringens SM101] gi|110682241|gb|ABG85611.1| ATP-dependent DNA helicase RecG [Clostridium perfringens SM101] Length = 564 Score = 357 bits (915), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 218/549 (39%), Positives = 334/549 (60%), Gaps = 18/549 (3%) Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186 GK KK+ N + +++P ++ N I +Y+L GL+ + K+I E L + ++ Sbjct: 2 GKFKKVNNTLEVINP---LIPCKEANKSEILPIYTLKNGLTNKILVKLINEILKNM-IIK 57 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + +++++K S+ +A IH P + + A RL + EL + +++M+ Sbjct: 58 ENLPEEIVKKYKLISLDKAIRNIHFPVGRGELQ---SAINRLKFQELFTYSLKIIMMKAH 114 Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 KKE GI + + +++ ++P++ T +Q +++IL D + M R++QGDVGSG Sbjct: 115 IKKENSGISFKM-SPLLKELKESLPYTLTNAQSRTLREILLDQKRNIAMNRLVQGDVGSG 173 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KTLVALI+M G Q V+MAP ILA QHY KKY + +E++TG+ + ++ Sbjct: 174 KTLVALISMFNVYMNGYQTVLMAPTEILANQHYAEAKKYLDKFGVDIELLTGSTKEKEKK 233 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 + E+IA G+ ++IGTHAL QD ++ L LV+ DEQHRFGV+QR +L K VL+ Sbjct: 234 RIKEKIASGKEIMLIGTHALIQDDVELNNLGLVVTDEQHRFGVEQRSRLINKNKRADVLV 293 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKK 484 MTATPIPRTL L D+DIS I E P GRKPI T+++ +N R+ LK V +G++ Sbjct: 294 MTATPIPRTLSLYLYSDLDISIIDELPPGRKPIDTMLVDMNQRMKAYNFALKEV-EKGRQ 352 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542 Y + P IEE ++ N SV + + L I I+HG+M+ DK+ ++++FKNG Sbjct: 353 FYIVSPLIEENEKLNLNSVEKIYEELKNGIFKDVRIEILHGKMAGKDKDKIINTFKNGEI 412 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 K +I+TTVIEVG++V +++++IIENAE FGLAQLHQLRGRVGRGE S CIL+ + +K Sbjct: 413 KGIISTTVIEVGVNVPNSTMMIIENAERFGLAQLHQLRGRVGRGEHKSYCILIAN---TK 469 Query: 603 NSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 N T R+ ++ + DGF IAEEDLK R GE+ G++Q G F++A ++L+ A Sbjct: 470 NDITRRRMEIMTESSDGFYIAEEDLKLRGAGEVFGMRQHGDEGFILANVVDDINILKCAN 529 Query: 661 KDAKHILTQ 669 +AK I+ Sbjct: 530 HEAKLIVNN 538 >gi|312892401|ref|ZP_07751896.1| ATP-dependent DNA helicase RecG [Mucilaginibacter paludis DSM 18603] gi|311295185|gb|EFQ72359.1| ATP-dependent DNA helicase RecG [Mucilaginibacter paludis DSM 18603] Length = 702 Score = 357 bits (915), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 246/683 (36%), Positives = 370/683 (54%), Gaps = 33/683 (4%) Query: 11 APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70 P+ +GVG + L K + F DLL + P +IDR KI E + + + Sbjct: 8 TPIEYLKGVGVARADVLKKELGIFT-----FADLLRHFPYKYIDRTRFYKIREANPD-LP 61 Query: 71 TITGYISQHSSFQLQKRRPYKIL--LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 + + S L ++ +++ + D TG + L +F + + ++ G+ V GK Sbjct: 62 HVQIIVRLKSKEILGEKHTKRLIAQVYDDTGTMELAWF-QGIKWIEKSLIVGKAYVVFGK 120 Query: 129 IKKLKNRIIMVHPHYIFHNSQDV----NFPLIEAVYSL----PTGLSVDLFKKIIVEALS 180 + M HP ++ + + N L A S P L +K+I L Sbjct: 121 PGLFNGKAQMAHPEIELYSPEAIKKQGNLKLQPAYSSTEKLKPFSLDSKGIQKLIAILLE 180 Query: 181 RLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 + + E I + LLQK EA+ IH P D + A +RL ++EL Q Sbjct: 181 QTAKDIEESIPQHLLQKLRLIGRREAYMNIHFP---ADTSHLNLAVDRLKFEELFFIQFK 237 Query: 240 LL----LMRKQFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRM 294 LL L +FK I G + +N +PF T +Q+ +K+I QD + +M Sbjct: 238 LLKNKLLHTLKFKGNI---FGTVGSYFNEFYKNKLPFDLTNAQKRVLKEIRQDTQRGIQM 294 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R+LQGDVGSGKT+VAL++M A++ G Q IMAP ILA QHY+ I++ + + V + Sbjct: 295 NRLLQGDVGSGKTVVALMSMLLAIDNGFQTCIMAPTEILANQHYQSIEQLIDDEFLEVAL 354 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 +TG+ R+ +++ G I+IGTHAL +D +Q+ L V++DEQHRFGV+QR KL Sbjct: 355 LTGSTSAKKRKVLHQKLESGDLKILIGTHALIEDKVQFKNLGFVVIDEQHRFGVEQRAKL 414 Query: 415 TQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 +K PHVL+MTATPIPRTL +T GD+D+S I E PAGRKPI+T+ + + + Sbjct: 415 WRKNIIPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPAGRKPIETLHLYDSHRLRMFG 474 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDK 530 +K + +G++ Y + P I+E ++ + +++ + + F I+I+HG+MS DK Sbjct: 475 FMKREIDKGRQVYVVYPLIKESEKLDLKNLTDGIEVMAREFPLPQYRISIVHGQMSASDK 534 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 + M F G ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S Sbjct: 535 DFEMQRFIKGETQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQS 594 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 CIL+ LS + RL + T +GF I+E DL+ R G I G +QSG+ +A Sbjct: 595 YCILMSSHKLSHDGKIRLETMVKTNNGFEISEIDLQLRGPGNIEGTQQSGVLDLKLANLA 654 Query: 651 LHDSLLEIARKDAKHILTQDPDL 673 LL IARK + I +DP L Sbjct: 655 TDQQLLMIARKCVEGIFEKDPQL 677 >gi|257870553|ref|ZP_05650206.1| ATP-dependent DNA helicase RecG [Enterococcus gallinarum EG2] gi|257804717|gb|EEV33539.1| ATP-dependent DNA helicase RecG [Enterococcus gallinarum EG2] Length = 681 Score = 357 bits (915), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 222/662 (33%), Positives = 373/662 (56%), Gaps = 27/662 (4%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P++ GVG+K + L+ + DLL Y+P + D R +++EI ++ VT Sbjct: 10 PITVLSGVGEKRAKDLAAL------GIQTIEDLLRYYPFRYEDIQER-QLNEIQDQEKVT 62 Query: 72 ITGYISQHS---SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 I G + + F +K R ++ D ++ + F+ + LK+ +I V GK Sbjct: 63 IKGIVVSPAVVNRFGYKKSRLQFRMMQDH--DVFNVSFFNQP-YLKDKVVLSEEIAVYGK 119 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187 + + + I + + +F P+ S+ + VDL ++ S + E Sbjct: 120 WDAKRKSLAGMK---ILGSKKPGDFAPIYHVNKSVRQSVLVDLIRQAFE---SYGDQIEE 173 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247 + L +K A +H P KD + + A+ R+ ++E Q+ + ++ Sbjct: 174 ILPLTLTEKYRLLDRQTAMRAMHFP---KDPQESHQAKRRIIFEEFFLFQMQIQGLKISE 230 Query: 248 KKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 K E G+ I+ + + + + +PF T +Q+ +I D+ M R+LQGDVGSGK Sbjct: 231 KAEKNGLAIDYDVQRLKAFTQTLPFELTAAQKRVTNEICHDLKSPQHMQRLLQGDVGSGK 290 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366 T+VA IA+ A + AG Q +M P ILAQQH E + + ++ ++TG+ RR Sbjct: 291 TVVAAIALYATMTAGFQGALMVPTEILAQQHLESLNQLFDPLEVTTALLTGSTKTKERRV 350 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426 LE++A G+ I++GTHAL Q+ + + +L LVI DEQHRFGV QR L +K P VL M Sbjct: 351 ILEQLAAGEIDIVVGTHALIQEGVNFARLGLVITDEQHRFGVNQRKILREKGYLPDVLFM 410 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486 TATPIPRTL +T+ G++D+S I E PAGR P++T + +++ V++ + L++G + Y Sbjct: 411 TATPIPRTLAITAYGEMDVSIIDEMPAGRIPVETRWVRPPQLESVLDWARQELAKGHQMY 470 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKL 544 ICP IEE + + ++ E + L +F + + I+HG+M +I+K+ +M+ FK+ ++ Sbjct: 471 VICPLIEESEMLDVKNATEIYEQLQAYFAPNYQVGILHGKMKNIEKDEIMEEFKDNQLQI 530 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P ++ Sbjct: 531 LVSTTVIEVGVNVPNATVMLIIDADRFGLAQLHQLRGRVGRGADASYCILVANPK-NETG 589 Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 R+ ++ T +GF+++E+DL+ R GE+ G +QSG+P+F A +LE+A+ +A Sbjct: 590 IERMKIMTETTNGFVVSEKDLQLRGPGEVFGNRQSGLPEFAAADLVADAHILEVAQVEAT 649 Query: 665 HI 666 I Sbjct: 650 QI 651 >gi|282861348|ref|ZP_06270413.1| ATP-dependent DNA helicase RecG [Streptomyces sp. ACTE] gi|282564006|gb|EFB69543.1| ATP-dependent DNA helicase RecG [Streptomyces sp. ACTE] Length = 754 Score = 357 bits (915), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 231/709 (32%), Positives = 368/709 (51%), Gaps = 91/709 (12%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGE 100 DLL ++P + +R ++++ + VT+ ++ +F + + ++ L DG+G Sbjct: 34 DLLHHYPRRYEERGRLTALTDLPLDEHVTVVAQVADARVMTFNGGRGKRLEVTLTDGSGR 93 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-------- 152 + L+FF GR+ GK+ ++ + HP Y ++Q + Sbjct: 94 LQLVFFGHGVHKPHKELLPGRRAMFAGKVSVFNRKLQLAHPTYQLLDAQAEDEATEAVDA 153 Query: 153 --------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAE 204 +P + + S +VD EA+ LP L + + F + E Sbjct: 154 FAGQLLPIYPACKQLDSWRIAKAVDTVLPSAQEAVDPLPA-------SLREGRGFLPLPE 206 Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK 264 A IH P D + ARERL +DE Q+AL R++F + +P + Sbjct: 207 ALLRIHRPHTKADI---AAARERLRWDEAFVLQVAL--ARRRFA-DTQLPAVARRPVPDG 260 Query: 265 ILRN----IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320 +L +PF+ T+ Q+ +I D++ ++ M R+LQG+VGSGKTLVAL AM V+A Sbjct: 261 LLDAFDAVLPFTLTEGQQKVTGEIFGDLATEHPMHRLLQGEVGSGKTLVALRAMLRVVDA 320 Query: 321 GGQAVIMAPIGILAQQHY----EFIKKYTQNTQIIVE----------------------- 353 GGQA ++AP +LAQQH+ E + + +N + E Sbjct: 321 GGQAAMLAPTEVLAQQHHRSITEMMGELAENWGLWREAPLDEGRRPGDGRALGGSDRGTK 380 Query: 354 --IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411 ++TG+M A RR+AL + G+A I+IGTHAL +D ++++ L LV+VDEQHRFGV+QR Sbjct: 381 VVLLTGSMGTAARRRALLDLVTGEAGIVIGTHALIEDKVKFHDLGLVVVDEQHRFGVEQR 440 Query: 412 LKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--- 467 L K PH+L+MTATPIPRT+ +T GD++ S + + PAGR PI + ++P Sbjct: 441 DALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAKDKPH 500 Query: 468 -IDEVIERLKVVLSEGKKAYWICPQI------EEKKESNFRS-------------VVERF 507 +D ER++ + G +AY +CP+I EKK+ +S V++ Sbjct: 501 FLDRAWERVREEVEGGHQAYVVCPRIGDDADEAEKKKGRKQSAPADDAEKRPPLAVLDIA 560 Query: 508 NSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 L + + I ++HGRM DK+ VM F G +L+ATTVIEVG++V +A+ ++I Sbjct: 561 AQLAKGPLAGLRIEVLHGRMPPDDKDDVMRRFAAGEADVLVATTVIEVGVNVPNATAMVI 620 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625 +A+ FG++QLHQLRGRVGRG C+L+ + + RLS + T DGF ++ DL Sbjct: 621 MDADRFGVSQLHQLRGRVGRGSAPGLCLLVSEAHEASPARARLSAVAATLDGFELSRIDL 680 Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDL 673 +QR+EG++LG QSG+ L + D ++ AR++A ++ DPDL Sbjct: 681 EQRREGDVLGQAQSGVRSSLRVLSVIDDEEVIAAAREEAVRVVAADPDL 729 >gi|148544386|ref|YP_001271756.1| ATP-dependent DNA helicase RecG [Lactobacillus reuteri DSM 20016] gi|148531420|gb|ABQ83419.1| ATP-dependent DNA helicase RecG [Lactobacillus reuteri DSM 20016] Length = 678 Score = 356 bits (914), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 229/667 (34%), Positives = 367/667 (55%), Gaps = 22/667 (3%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP-KISEI 64 + L ++ +GVG K ++ + DLL Y+P+ + D + P I Sbjct: 1 MRSLTDSVANLKGVGPK------RVADLATLGIDTIEDLLTYYPTRYND--FTPTDIESA 52 Query: 65 SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKI 123 +++ +T+ G + R ++ G E+ + F+ + + K + +++ Sbjct: 53 KDKQKITLQGVVVSEPLLVRYGYRRNRLTFRMQVGNEVVIATFFNQPYIKKQIELN-QQV 111 Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183 TV GK + ++ + + D N AVY++ + ++ + I +A Sbjct: 112 TVMGKWDAPRRQV--TGNKLLKEKADDRNE--FGAVYAVNKHIRQNVLQSFIRQAYEEYA 167 Query: 184 -VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 ++P ++ + + Q+ + IH P+ AR AY+E Q+ L Sbjct: 168 NIIPTYLPETIRQRYRLMDRRQMIREIHFPQTQA---TAKAARRTAAYEEFFLFQLRLQA 224 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +R+ ++E G I ++ + +PF T +Q+ + +I +DM Q +M R+LQGDV Sbjct: 225 IRRAHRQEDGERILYHNDELKEFIGGLPFELTDAQKRVVNEICRDMRQPYQMNRLLQGDV 284 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKT+VA IA+ AA+ AG QA +MAP ILA QH + + K + T + V ++TG++ Sbjct: 285 GSGKTIVAAIAIYAAITAGYQAALMAPTEILAGQHAKKLAKIFEGTHVQVALLTGSLTAK 344 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 R+ L + G ++I+GTHAL QD ++Y L LVI DEQHRFGV QR +L +K P Sbjct: 345 QHRELLTAMKRGDVNLIVGTHALIQDGVEYANLGLVITDEQHRFGVNQRQQLREKGEHPD 404 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 VL MTATPIPRTL +T+ G++D+S I + PAGRKPI+T + N+ I L+ L +G Sbjct: 405 VLAMTATPIPRTLAITNYGEMDVSIIDQLPAGRKPIQTKWLQSNQHAAAIHFLREQLKQG 464 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNG 540 +AY + P IEE + ++ + +N L + + ++HGRM +K+ M FK+G Sbjct: 465 AQAYVVSPLIEESAALDVQNATDLYNQLSADLEPAYKVGLLHGRMGTEEKDEAMRQFKSG 524 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L+ATTVIEVG+D +A++++I +A+ FGLAQLHQLRGRVGRG S C+L+ P Sbjct: 525 ELQVLVATTVIEVGVDNPNATVMVIYDADRFGLAQLHQLRGRVGRGSRQSYCLLIADPKT 584 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + R+ + T+DGF IAE+DLK R G++LG KQSGMP+F + P +L+IAR Sbjct: 585 DEGK-ARMKTMVATDDGFKIAEQDLKLRGSGDVLGKKQSGMPEFKVGDPVADLKMLQIAR 643 Query: 661 KDAKHIL 667 DA ++L Sbjct: 644 ADAGNLL 650 >gi|288800335|ref|ZP_06405793.1| ATP-dependent DNA helicase RecG [Prevotella sp. oral taxon 299 str. F0039] gi|288332548|gb|EFC71028.1| ATP-dependent DNA helicase RecG [Prevotella sp. oral taxon 299 str. F0039] Length = 701 Score = 356 bits (914), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 234/674 (34%), Positives = 375/674 (55%), Gaps = 32/674 (4%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITG 74 +GVG K LS + DLL Y+P ++DR + E++ + V I G Sbjct: 12 LQGVGPKRKDILSSELGIKTWG-----DLLEYYPYKYVDRSKIYAVHELTGDMPFVQIKG 66 Query: 75 YISQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133 I F++ RR + TG + L +++ + ++ + + V GK Sbjct: 67 RILSFEEFEMGARRKRLVAHFRGSTGGVVDLVWFQGAQYIRKTYNLNDEYLVFGKPTFYN 126 Query: 134 NRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKI-----IVEALSRLPV---- 184 R HP + V IE + P ++ + KK +E ++R+ V Sbjct: 127 GRYQFTHPEI-----EKVGEVQIETMRMQPYYITTEKMKKAGLQSRAIEKITRMLVDKIP 181 Query: 185 ---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 LPE + + ++ S EAF IH P D + A+ RL ++EL Q+ +L Sbjct: 182 QEALPETLPTFITERLHLVSRYEAFRNIHYPTSLTDVQ---NAQLRLKFEELFFVQLNIL 238 Query: 242 LMRKQFKKEI-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 + +++ G + G N+PF T +Q+ +K+I DM +M R+LQ Sbjct: 239 RYSTEHRRKYRGYLLPKVGHFFNTFYTNNLPFPLTNAQKRVMKEIRSDMITGRQMNRLLQ 298 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKTLVAL+ M A++ QA +MAP ILA+QH+ I + ++ + VE++TGN+ Sbjct: 299 GDVGSGKTLVALMTMLIAIDNDFQACLMAPTEILAEQHFTTIVSFLKSLDVQVELLTGNV 358 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-A 418 R++ L R+ G+ +++GTHA+ +DS+Q+ +L + +VDEQHRFGV QR K+ K A Sbjct: 359 KGKKRQEILTRLEKGEIQMLVGTHAVIEDSVQFARLGVAVVDEQHRFGVAQRAKMWAKSA 418 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PHVL+MTATPIPRTL +T GD+D+S I E P GRKPI+T+ + + + ++ Sbjct: 419 QPPHVLVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIETIHKYDTQTVSLYDGIRKQ 478 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 +++G++ Y + P I+E ++++ +S+ F +L E F + ++ +HG+M +KE M+ F Sbjct: 479 VAQGRQVYIVFPLIKESEKTDLQSLETGFENLKEVFPNFKMSKVHGKMKPKEKEEEMNRF 538 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 G ++L+ATTVIEVG++V +A++++I A+ FGL+QLHQLRGRVGRG + S CIL+ + Sbjct: 539 VKGETQILVATTVIEVGVNVPNATVMVILEAQRFGLSQLHQLRGRVGRGGDQSYCILVTN 598 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLL 656 LS ++ R+ ++ T DGF IAE DLK R G++ G +QSGM L IA L+ Sbjct: 599 YKLSADTKKRIDIMCATNDGFQIAEADLKLRGPGDLEGTQQSGMAFDLKIANIARDGQLV 658 Query: 657 EIARKDAKHILTQD 670 ++AR +A ++ D Sbjct: 659 QMARTEALRVVDND 672 >gi|227872675|ref|ZP_03991005.1| DNA helicase RecG [Oribacterium sinus F0268] gi|227841489|gb|EEJ51789.1| DNA helicase RecG [Oribacterium sinus F0268] Length = 679 Score = 356 bits (914), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 229/683 (33%), Positives = 367/683 (53%), Gaps = 41/683 (6%) Query: 17 RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76 +GVG+K + K+ N DLL P S++ PK+ ISE R Sbjct: 10 KGVGEKTAALFHKM------NIYTKEDLLEDFPISYLQY---PKLCPISEARE------- 53 Query: 77 SQHSSFQLQKRRPYKILLN-----------DGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 + +F L ++L N D +G++ + +F+ L +GRK+ Sbjct: 54 KEWMAFSLVLLEDARVLRNTKLSMLQCSAADESGKLLIQYFH--ASYLLKTLKKGRKLVF 111 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 G++K + +I+ P + +E +YSL GL L +K I E P + Sbjct: 112 FGQVKSFRGHLILQQPKIFSLEEYEEKRKSLEPIYSLRKGLGNALRRKCIQEIFKEEPKI 171 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 E +D L+K+ + +A +H P++ E +RLA++EL + L + Sbjct: 172 LESFPRDFLEKEGLCNKKQAMEYLHLPKRE---EERQEGLKRLAFEELFYYSLFLEKEER 228 Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 F G + GK ++ + +PFS TK+Q A++++ + SQ R+LR +QGDVGSG Sbjct: 229 DFLSLSGNEEKIPGK-REEFQKGLPFSLTKAQSEALEEMDRVFSQGERLLRFVQGDVGSG 287 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ--IIVEIITGNMPQAH 363 KT++A + G Q IM P ILAQQH++ ++K + Q I + ++ G+ + Sbjct: 288 KTILAFYVLFLMASKGFQTAIMVPTEILAQQHFQKLQKLLEENQWEIPIALLIGSSSKKE 347 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 + + + + G +IGT AL Q+ + + L ++++DEQHRFG+Q+R +L +K PH Sbjct: 348 KERIYQGLKEGSILGVIGTQALIQEGLAFSHLKMLVIDEQHRFGIQERNRLEKKGENPHC 407 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII-PINRIDEVIERLKVVLSEG 482 + ++ATPIPR+LV G + ++EKPA R PIK + P +R ++ +K L +G Sbjct: 408 IYLSATPIPRSLVKLLYGAVPYLLLSEKPANRLPIKNALFSPADR-EKAFSFIKKELDKG 466 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNG 540 ++AY ICP +EE + + SV +L ++F S A++HG+M +KE VM F +G Sbjct: 467 RQAYIICPLVEENENLSVESVTAYQKNLKQYFGKDYSFAVLHGKMKAGEKEQVMQDFSSG 526 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L++TTV+EVG+DV +A++++IENAE FGLAQLHQLRGRVGR E S CI + H Sbjct: 527 KTRILLSTTVVEVGVDVANATVMLIENAERFGLAQLHQLRGRVGRSELQSYCIFMDHKE- 585 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI-LGIKQSGMPKFLIAQPELHDSLLEIA 659 + S RLS+++++ DGF IA+EDL R G++ G +QSG +F A P + L A Sbjct: 586 DEKSQKRLSIIRDSNDGFAIAKEDLALRGPGDLFFGERQSGPLQFRFADPLRDEELFFKA 645 Query: 660 RKDAKHILTQDPDLTSVRGQSIR 682 R+ AK +L +D L Q I+ Sbjct: 646 REAAKTLLEEDALLERPEHQGIK 668 >gi|319941449|ref|ZP_08015777.1| ATP-dependent DNA helicase RecG [Sutterella wadsworthensis 3_1_45B] gi|319805069|gb|EFW01899.1| ATP-dependent DNA helicase RecG [Sutterella wadsworthensis 3_1_45B] Length = 716 Score = 356 bits (914), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 227/643 (35%), Positives = 348/643 (54%), Gaps = 16/643 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 D + + P + D I + I G + + S+ + L D TG +T Sbjct: 58 DFVLHLPLRYEDETRIDPIGLLRAGETAQIQGEVVRSSTISTARGPQLVAELADQTGRVT 117 Query: 103 LLF--FYRKTEMLKNVFFEGRKITVTGKIK-KLKNRIIMVHPHYIFHNSQDVNFPL-IEA 158 L F +Y T L + G + G+ + + ++HP + + P + Sbjct: 118 LRFIHYYPTTRSLLTI---GTTLRAFGEPRPAYSGGLELIHPKLKKPVAGEDALPSSLTP 174 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 VYSL G+ +K I AL L + + + ++ P + + +H+P Sbjct: 175 VYSLGEGIQQTWLRKRINRALLDLMGMDDPLPAEVAAALQLPGLKASLEYLHHPPADAPH 234 Query: 219 E----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI-NVEGKIAQKILRNIPFSP 273 E T P +RL +DELLA QI L +R +E + + K+ L +PF+ Sbjct: 235 EPLMNRTDPHWQRLKFDELLAQQITLKQLRAAVGQESAPALTDSAAKLTTAFLNALPFAL 294 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T++Q ++ D+++ M R++QGDVG GKT++A +A A+EAG QA +MAP IL Sbjct: 295 TRAQTRVWDEVAHDLAEPRPMHRLVQGDVGCGKTVIAAMAALRAIEAGRQAALMAPTEIL 354 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A QH E I ++ + + + +TG + + + AL A G+A ++IGTHAL Q+ + + Sbjct: 355 ADQHLEKIARWLEPLGVKIVRLTGRLKASEKTAALAAAASGEAQLVIGTHALIQEGVAFK 414 Query: 394 KLILVIVDEQHRFGVQQRLKLTQ---KATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 L L IVDEQHRFGV+QRL LT+ PH+L+++ATPIPRTL ++ DID+S I E Sbjct: 415 ALGLAIVDEQHRFGVEQRLALTRLMPDGRRPHLLMLSATPIPRTLAMSYFADIDVSVIDE 474 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P GR P+ T ++ ++R D V+ + +S+G++ YW+CP IEE + + L Sbjct: 475 LPPGRTPVATKLVRLDRRDAVLAVVNDTVSKGRQVYWVCPLIEESEMLDLTPASRCAEEL 534 Query: 511 HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 + ++HG MS +KE+VM F G +LL+ATTVIEVG+DV +A+++IIE+AE Sbjct: 535 AARLPHVRVGLLHGAMSAAEKEAVMSDFAAGRIELLVATTVIEVGVDVPNATLMIIEHAE 594 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629 FGLAQLHQLRGRVGRG ++C+LL+ LS+ RL +++ + DGF IA DL+ R Sbjct: 595 RFGLAQLHQLRGRVGRGGGAAACVLLFDGNLSETGKERLKIIRESNDGFEIARRDLELRG 654 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 GE LG +QSGMP A + L+E A + A +L Q P+ Sbjct: 655 PGEFLGEQQSGMPMLQFADLDSDAELVETASRTADLMLKQYPE 697 >gi|291522172|emb|CBK80465.1| ATP-dependent DNA helicase RecG [Coprococcus catus GD/7] Length = 687 Score = 356 bits (914), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 239/678 (35%), Positives = 370/678 (54%), Gaps = 35/678 (5%) Query: 13 LSTFRGVGKKYSLFLSKI--INCGNANETRFIDLLFYHPSSFIDRHYRPKIS-EISEERI 69 +ST +G+G K L++I G D+ ++P + Y +S E +E Sbjct: 7 ISTIKGIGAKTESHLARIGIYTVG--------DMAEHYPREY--HAYDTPVSIENTEYDN 56 Query: 70 VTITGY---ISQHSSFQLQKRRP-YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 +GY S+ + R P ++L+ G + +++++ + ++ G + + Sbjct: 57 RRQSGYRVIFSETPKLLKRGRTPIVSVMLHAGNASVQVVWYH--SPYVRQQLKPGCTVIL 114 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 GKI +R ++ HP + + ++ VY L GL+ + F K + L +L Sbjct: 115 YGKITSKGSRRMLDHPDIYTEDQYALLQKSLQPVYGLTEGLTQNFFMKTMHSILDSGLLL 174 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 P+ + D+ ++ A IH P ++ E AR+RL +DE L +++ K Sbjct: 175 PDPLPADIRRQYQLSEYNYALRQIHFP---ENEEACRMARKRLVFDEFLVFALSV----K 227 Query: 246 QFKKEIGIPIN----VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 Q KKE N E +++ ++P+ TK+Q +I +DM M R++QGD Sbjct: 228 QLKKENHQIENHYQIQESAAVSQLIASLPYHLTKAQLRVWHEIEEDMKSPVVMNRLVQGD 287 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT++A +AM AA +AG Q+ +MAP +LA+QHYE ++ I ++TG+M Sbjct: 288 VGSGKTMIAALAMFAAAKAGFQSCMMAPTEVLARQHYENLQALYAPFGIETVLLTGSMTA 347 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420 A +RK RI + +A +IIGT ALFQ+ Y KL L++ DEQHRFGV+QR +L K+ Sbjct: 348 AAKRKTYSRIENHEADVIIGTQALFQEKAVYDKLALIVTDEQHRFGVRQREQLAMKSNGG 407 Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 PHVL+M+ATPIPRTL + D+DIS + EKPA R PIK ++ + L+ + Sbjct: 408 EPHVLVMSATPIPRTLAIILYSDLDISVVDEKPANRLPIKNCVVGTSYRPTAYRFLEQQI 467 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSF 537 +G + Y +CP +EE + +V E L + + I + +HG+M K +M+ F Sbjct: 468 RQGHQVYVVCPMVEESENIEAENVQEYTEKLKKVLPADIKVEYLHGQMKPEQKNGIMERF 527 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 G ++L++TTVIEVG+DV +A++++IENAE FGLAQLHQLRGRVGRG+ S CI +Y Sbjct: 528 SEGEIQVLVSTTVIEVGVDVPNATVMMIENAERFGLAQLHQLRGRVGRGDAQSYCIFIYG 587 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 +K RL+++ T DGF IA EDLK R G++ GI+QSG F I + L Sbjct: 588 QE-NKKVKDRLNIMLGTNDGFKIASEDLKLRGPGDMFGIRQSGSMIFKIGDVFADSACLV 646 Query: 658 IARKDAKHILTQDPDLTS 675 A K A HIL++DP+L S Sbjct: 647 EAGKAADHILSEDPELKS 664 >gi|49483390|ref|YP_040614.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus MRSA252] gi|257425280|ref|ZP_05601705.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp. aureus 55/2053] gi|257427940|ref|ZP_05604338.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp. aureus 65-1322] gi|257430573|ref|ZP_05606955.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp. aureus 68-397] gi|257433334|ref|ZP_05609692.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp. aureus E1410] gi|257436176|ref|ZP_05612223.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus M876] gi|282903780|ref|ZP_06311668.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus C160] gi|282905544|ref|ZP_06313399.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp. aureus Btn1260] gi|282908520|ref|ZP_06316350.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910799|ref|ZP_06318602.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus WBG10049] gi|282914002|ref|ZP_06321789.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus M899] gi|282918924|ref|ZP_06326659.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus C427] gi|282924047|ref|ZP_06331723.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus C101] gi|283957968|ref|ZP_06375419.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus A017934/97] gi|293501035|ref|ZP_06666886.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus 58-424] gi|293509994|ref|ZP_06668702.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus M809] gi|293526582|ref|ZP_06671267.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus M1015] gi|295427712|ref|ZP_06820344.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591329|ref|ZP_06949967.1| DNA helicase RecG [Staphylococcus aureus subsp. aureus MN8] gi|81651274|sp|Q6GHK8|RECG_STAAR RecName: Full=ATP-dependent DNA helicase recG gi|49241519|emb|CAG40205.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus MRSA252] gi|257271737|gb|EEV03875.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp. aureus 55/2053] gi|257274781|gb|EEV06268.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp. aureus 65-1322] gi|257278701|gb|EEV09320.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp. aureus 68-397] gi|257281427|gb|EEV11564.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp. aureus E1410] gi|257284458|gb|EEV14578.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus M876] gi|282314019|gb|EFB44411.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus C101] gi|282316734|gb|EFB47108.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus C427] gi|282322070|gb|EFB52394.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus M899] gi|282325404|gb|EFB55713.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus WBG10049] gi|282327582|gb|EFB57865.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330836|gb|EFB60350.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp. aureus Btn1260] gi|282595398|gb|EFC00362.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus C160] gi|283790117|gb|EFC28934.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus A017934/97] gi|290920654|gb|EFD97717.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus M1015] gi|291096040|gb|EFE26301.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus 58-424] gi|291466938|gb|EFF09456.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus M809] gi|295128070|gb|EFG57704.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576215|gb|EFH94931.1| DNA helicase RecG [Staphylococcus aureus subsp. aureus MN8] gi|312438396|gb|ADQ77467.1| DNA helicase RecG [Staphylococcus aureus subsp. aureus TCH60] gi|315194113|gb|EFU24506.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus CGS00] Length = 686 Score = 356 bits (913), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 215/636 (33%), Positives = 358/636 (56%), Gaps = 24/636 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DL+ Y P+ + D +++ ++ VTI G + R K+ ++ I Sbjct: 37 DLVLYLPTRYEDNTV-IDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIA 95 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--------DVNFP 154 + + LK + ITV GK ++K I + +F NSQ DV Sbjct: 96 VKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEIT---GNRVFLNSQGTQTQENADVQ-- 150 Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 +E VY + G+ + I +AL+ + + EW+ +L +K ++ N +H+P+ Sbjct: 151 -LEPVYRIKEGIKQKQIRDQIRQALNDVTI-HEWLTDELREKYKLETLDFTLNTLHHPKS 208 Query: 215 AKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 +D AR A+ EL ++ + L R + + I I+ + + + +PF Sbjct: 209 KEDL---LRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDLDQVKSFIDRLPFEL 265 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T++Q+S++ +I +D+ RM R+LQGDVGSGKT+VA I M A AG Q+ +M P IL Sbjct: 266 TEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEIL 325 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QH E + ++ + V ++TG++ R+ LE++ + +IGTHAL QD + ++ Sbjct: 326 AEQHAESLIALFGDS-MNVALLTGSVKGKKRKILLEQLENRTIDCLIGTHALIQDDVIFH 384 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 + LVI DEQHRFGV QR L +K +VL MTATPIPRTL ++ G++D+S I + P Sbjct: 385 NVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPK 444 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHE 512 GRKPI T + D+V+ ++ L +G++AY ICP IE + + ++VV + SL + Sbjct: 445 GRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQ 504 Query: 513 HF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 ++ S + ++HG++S +K+ VM F N +L++TTV+EVG++V +A+ ++I +A+ F Sbjct: 505 YYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRF 564 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631 GL+ LHQLRGRVGR ++ S C+L+ P ++ R++++ T DGF ++E DL+ R G Sbjct: 565 GLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPG 623 Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 + G+KQSG+P FL+A +LE+AR +A ++ Sbjct: 624 DFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELI 659 >gi|317131206|ref|YP_004090520.1| ATP-dependent DNA helicase RecG [Ethanoligenens harbinense YUAN-3] gi|315469185|gb|ADU25789.1| ATP-dependent DNA helicase RecG [Ethanoligenens harbinense YUAN-3] Length = 687 Score = 356 bits (913), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 243/683 (35%), Positives = 365/683 (53%), Gaps = 51/683 (7%) Query: 15 TFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITG 74 T RGVG K + +K+ + R DLL+ P S+ D IS+ + + I Sbjct: 10 TLRGVGPKRAALFAKL----GVHTVR--DLLYTFPRSYEDFTRPVSISQAAPGEVCCIRA 63 Query: 75 YISQ-------HSSFQLQKRRPYKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITV 125 +S L K R + D +G + ++FF K E+LK EG + Sbjct: 64 VVSAPIRVTRASGGMLLCKTR-----VADDSGILEVVFFNNKYAAELLK----EGAAYFL 114 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV- 184 G++ R M P + P + VY+ GLS + ALS Sbjct: 115 YGRVSGTLFRKTMTAPECLPAGCN----PGLRPVYATTAGLSSRAVGAAVQAALSLFATR 170 Query: 185 -LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 +PE + L + + A IH PR D + + AR RL +DELLA + + L+ Sbjct: 171 TIPELLPDTLRAEYQLCRVGCALQNIHFPR---DGQALAAARRRLVFDELLALLLGMGLL 227 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 R + + + P + ++P++PT +Q A+ + DM++ M R+++GDVG Sbjct: 228 RHR-QADGHAPRCLPDFDFAPFFASLPYTPTGAQLRAVAEAAADMARAVPMNRLIEGDVG 286 Query: 304 SGKTLVALIAMAAAVEAGG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 SGKT VA A+ AGG Q+ +MAP ILA QH +++ + + V ++TG +P A Sbjct: 287 SGKTTVA-AALCVLAHAGGLQSALMAPTEILAAQHARNLERLLAPSGLRVGLLTGGLPAA 345 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK----- 417 +R+ IA G +++GTHAL Q+ + +++L LVI DEQHRFGV QR L K Sbjct: 346 KKREVKAAIADGSVGLVVGTHALLQEDVAFHRLGLVITDEQHRFGVAQRAALAAKGSTDA 405 Query: 418 --ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +++PH+L+M+ATPIPRTL L GD+D+S + E PAGR+P++T ++ V L Sbjct: 406 VDSSSPHMLIMSATPIPRTLSLMIYGDLDVSVLNELPAGRRPVRTYLVGSGLRARVHRFL 465 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESV 533 + + +G++AY +CP + E ES + V+ + L E + I ++HGRM +KE V Sbjct: 466 RTQVEQGQQAYIVCPLV-EADESELAAAVQLRDGLAETSLAGIPVGLLHGRMPAREKEKV 524 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M +F G KLL++TTVIEVG+DV A+++++ENAE FGL+QLHQLRGRVGRG S CI Sbjct: 525 MQAFAAGDLKLLVSTTVIEVGVDVPAATVMVVENAERFGLSQLHQLRGRVGRGAAQSHCI 584 Query: 594 LLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 L+ ++++ T RL L T DGF IAE+DLK R G+ G +Q G+P IA Sbjct: 585 LISD---AEDAATRERLQTLCKTADGFAIAEQDLKLRGPGDFFGKRQHGLPALAIADLMG 641 Query: 652 HDSLLEIARKDAKHILTQDPDLT 674 +L+ AR+ A +L QDP L+ Sbjct: 642 DMDILQEARRAADTLLRQDPALS 664 >gi|291542986|emb|CBL16096.1| ATP-dependent DNA helicase RecG [Ruminococcus bromii L2-63] Length = 681 Score = 356 bits (913), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 238/686 (34%), Positives = 369/686 (53%), Gaps = 42/686 (6%) Query: 12 PLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69 P++ G+G+K + ++ I + G DL+ ++P ++ D I E+ Sbjct: 8 PVTNLNGIGEKRAALFARLGIKSVG--------DLINFYPRTYEDWSNIKHIDELEYGET 59 Query: 70 VTITGYI--SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 V I + S + + R K + D TG I L+FF K + ++ +G + G Sbjct: 60 VCIKAVVATSVNDTRISGGRIISKTAVYDETGSIQLVFFNNK--YISSMLRQGGEYFFYG 117 Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--- 184 KI + +V P + + V I +Y GL + + +ALS LP Sbjct: 118 KISSDSYGMQIVSPTF----APAVKGTQIRPIYRQTAGLPSKSVESAVRQALSMLPSKIK 173 Query: 185 --LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 LP+ I ++ S+ +A IH P+ + E AR+RL +EL+ + + Sbjct: 174 DPLPDAIR----ERFDLCSLRQALFDIHFPKNRQQLE---AARKRLVTEELVVLNLGMRN 226 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML-RILQGD 301 +R + + I + +++ +PF+ T +Q+ A+ D + D+ K+ L R++QGD Sbjct: 227 LRDHSRGVTSLEITKD--YSKEFESLLPFTMTNAQKRAVSDCINDIINKSSPLNRLVQGD 284 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT VA + G Q MAP ILA+QHY+ +K +NT I V ++TG + + Sbjct: 285 VGSGKTAVAASVCYTVAKNGFQTAFMAPTEILARQHYKTFQKLFENTDIKVGLLTGTLRE 344 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 + +++ + +A G ++IGTHAL D ++ L L + DEQHRFGV QR KL K P Sbjct: 345 SEKKQIRKSLADGSIDMVIGTHALITDKTEFKNLALAVTDEQHRFGVAQRAKLLGKGNNP 404 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 H+L+M+ATPIPRTL L GD+DIS I E P RKP+KTV+ V + ++ + Sbjct: 405 HLLVMSATPIPRTLGLIIFGDLDISIIDELPPSRKPVKTVLRTSAMRGGVYDFIRSEVKH 464 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNS--LHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 G++AY +CP +EE + + S E L E ++ I+HG+M +K+ VM F Sbjct: 465 GRQAYIVCPLVEEGELDDVASAEEYAADLMLREFPDIAVGIVHGQMKSDEKDEVMRKFVE 524 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 +L+ATTVIEVG+DV +A++I+IENAE FGL+QLHQLRGRVGRG S CIL+ Sbjct: 525 NEYSVLVATTVIEVGVDVPNATVIVIENAERFGLSQLHQLRGRVGRGSSQSYCILISDKG 584 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEI 658 SK + RL V+ +T +GF+IA+EDLK R G+ G +Q G+P+ IA + D+ LE+ Sbjct: 585 -SKTTRERLEVMCSTNNGFVIADEDLKMRGPGDFFGHRQHGLPQMSIA--DFADTKSLEL 641 Query: 659 ARKDAKHILTQDPDLTSVRGQSIRIL 684 ++K A I+ + D +R IR+L Sbjct: 642 SQKIADCIMDRYGD---IRNDEIRLL 664 >gi|295425211|ref|ZP_06817914.1| DNA helicase RecG [Lactobacillus amylolyticus DSM 11664] gi|295064987|gb|EFG55892.1| DNA helicase RecG [Lactobacillus amylolyticus DSM 11664] Length = 679 Score = 356 bits (913), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 223/687 (32%), Positives = 372/687 (54%), Gaps = 27/687 (3%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 N LFAP++ +GVG K + N G+ DLLFY P + + P + +I + Sbjct: 4 NALFAPVTDIKGVGTKTA------ANLGSLGIYSIYDLLFYFPFRYDELQTLP-LDQIMD 56 Query: 67 ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122 + V + G ++ + F +K R +K+ ++ +I ++ F+ + LKN G++ Sbjct: 57 GQKVLLKGIVATEPFLTRFGYKKSRLSFKLRIDH---DIVMVNFFNQP-WLKNKVEIGKE 112 Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR- 181 + V GK + + ++ D + +Y + + +I A+ Sbjct: 113 VAVYGKYNVARQSLSAFK--FVAEKENDSG---MAPIYPVNKHVKQKKLVGLINFAIDNY 167 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 L + + I + +K + E + +H+P+ + + A+ + E Q+ L Sbjct: 168 LDQVKDIIPAKVREKYRLLTDQEIISKMHHPKNGNEAQL---AKRSAIFREFFIFQMQLA 224 Query: 242 LMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L+ Q + G + K K+ ++PF + Q+ A+ +I D+ QK +M R+LQG Sbjct: 225 LLTSQSNEHNTGEAKKYDLKAIAKLTASLPFELSADQKQAVNEIYADLFQKRQMRRLLQG 284 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA+ A+ AA+ AG QA +M P ILA QH+ I + + + V ++TGN Sbjct: 285 DVGSGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFNKIDQLLRPLGVRVALLTGNTK 344 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 RR+ + G +++IGTHAL Q ++ + L LVI+DEQHRFGV QR L K Sbjct: 345 TLERREIYRELTDGTINVVIGTHALIQKNVIFKNLGLVIIDEQHRFGVGQRQALINKGEC 404 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 P +L MTATPIPRTL LT G++ +S+I PAGRKPI + +++D V ++ L+ Sbjct: 405 PDILAMTATPIPRTLALTVYGEMSVSEIRHLPAGRKPIISSWQTSSQMDSVYRLMREQLA 464 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKN 539 G + Y + P I E + + ++ E L F ++ ++HG+M K+ +M F Sbjct: 465 AGFQIYAVTPLISESETLDLKNAEELHQKLSHDFPDQNVVLLHGQMPGPKKDEIMADFAA 524 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+ S C+ + P Sbjct: 525 GEIDILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGQTQSYCVFVADPK 584 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 + + R+ ++ +T DGF +AEEDLK R EG++ G QSG+P+F + + L +A Sbjct: 585 -TDSGKARMKIIASTNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGNVVNNYQTLVVA 643 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLY 686 +K+AK ++ DP LT+ Q+++ +L+ Sbjct: 644 QKEAKALVQADPKLTAADHQTLKEILH 670 >gi|297565888|ref|YP_003684860.1| ATP-dependent DNA helicase RecG [Meiothermus silvanus DSM 9946] gi|296850337|gb|ADH63352.1| ATP-dependent DNA helicase RecG [Meiothermus silvanus DSM 9946] Length = 903 Score = 356 bits (913), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 215/641 (33%), Positives = 358/641 (55%), Gaps = 18/641 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR--RPYKILLNDGTGE 100 DLL +P + DR I E+ E T+ G + + ++ ++ L D G Sbjct: 246 DLLHNYPRRYEDRRALVSIREVHEGEKATVVGKVLTKEMVKTPRKGITLVQVRLMDAWGW 305 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160 ++ + +LK++ EG + ++GK++K ++I ++ ++ + ++ I VY Sbjct: 306 KFTAVWFNQPWVLKSIQ-EGSSVIISGKVQKRGSQISLLVEYFENEEGESLSTGRIVPVY 364 Query: 161 SLPTGLSVDLFKKIIVEALSRLPVLPE----WIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216 G+S ++ L P+LP+ +++ D P + + H P + Sbjct: 365 PAKEGISQAFLRRSAWRGLEAFPLLPDPLEPYLQADGAPSLDLPPLRWSLQQAHFPDSEE 424 Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276 + + A ERL +DE + ++ +++ + +G VE ++ QK ++PF T++ Sbjct: 425 NL---ARALERLKFDEYVLLELKVMI-QSGGSGLLGRMFRVEPEMIQKFRSSLPFQLTQA 480 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 QE + +IL DM + +M R++QGDVGSGKT VA A+ A + G Q +MAP ILA+Q Sbjct: 481 QERVLGEILADMQSERQMARLVQGDVGSGKTAVAAAALYVAAQNGAQGALMAPTEILAKQ 540 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 HY ++KY + V+++ G+M +R+ALER+ +++GTHAL Q+ +++ L Sbjct: 541 HYANLQKYLFPLGVTVDLLVGSMSAGEKREALERLQSAHTDVVVGTHALIQEGVEFKDLG 600 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 L ++DE+HRFGV QR +L + + P VL+M+ATPIPR+L LT GD+++S+I E P GR Sbjct: 601 LAVIDEEHRFGVMQRRRLLK--SRPDVLVMSATPIPRSLALTLYGDLEVSQIDELPPGRT 658 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE---SNFRSVVERFNSLHEH 513 P+KT ++ + + +++G + + + P IEE + ++ L E Sbjct: 659 PVKTKVLTHKLRHQAYAFARQEIAKGNQVFVVTPMIEEGDSEVTAELQAATRLAQELQEL 718 Query: 514 FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 I ++HG+M +K++VM+ F+ LL++TTVIEVG+D+ A++++IENAE FG Sbjct: 719 LPDVRIDLLHGKMRAEEKDAVMERFRYRHFDLLVSTTVIEVGVDIPQATVMVIENAERFG 778 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 LAQLHQLRGRVGRG + CIL+ SK + +RL V++ + DGF IAE+DL+ R GE Sbjct: 779 LAQLHQLRGRVGRGGLEAYCILIAG-ETSKKTMSRLRVIEESTDGFYIAEKDLELRGPGE 837 Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 + G++QSGMP + ++E AR AK IL DP L Sbjct: 838 LRGVRQSGMPDLKLGDLVSDGEIIERARALAKRILESDPYL 878 >gi|238854784|ref|ZP_04645114.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 269-3] gi|260664015|ref|ZP_05864868.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii SJ-7A-US] gi|282933862|ref|ZP_06339210.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 208-1] gi|313472296|ref|ZP_07812788.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 1153] gi|238832574|gb|EEQ24881.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 269-3] gi|239529856|gb|EEQ68857.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 1153] gi|260561901|gb|EEX27870.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii SJ-7A-US] gi|281301951|gb|EFA94205.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 208-1] Length = 674 Score = 356 bits (913), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 223/679 (32%), Positives = 375/679 (55%), Gaps = 35/679 (5%) Query: 5 FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64 LN LF P++ +GVG K + L + + DLLFY P + D P + ++ Sbjct: 1 MLNNLFEPVTKLKGVGPKTAAALESL------SIYSVYDLLFYFPYRYDDLEMIP-LDQL 53 Query: 65 SEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 ++ + V + G ++ S F +K R +K+ ++ +I ++ F+ + LKN G Sbjct: 54 NDGQKVLLKGIVATEPFVSRFGYKKSRLSFKLRIDH---DIIMVNFFNQP-WLKNQLEVG 109 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 +++ V GK K + + F +++ L VY + + ++I AL+ Sbjct: 110 KEVAVYGKYNLAKQSL----SGFKFVAAKNEESSL-SPVYPVNRHIKQKKLVELIKLALA 164 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA-----YDELLA 235 + L + + +++ QK + E +H P+ SP +LA + E Sbjct: 165 QKNELMDIVPENIRQKYRLMNDQELVEKMHEPK--------SPNEAKLAKRSAIFREFFI 216 Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 QI L L+ + + +G + +K+ +PF + Q+ + +I D+ ++ +M Sbjct: 217 FQIQLALLTMRPQGRLGTAKKYDLNEIKKLTATLPFELSDDQKKVVNEIFADLHREKQMR 276 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R+LQGDVGSGKT+VA+ A+ AA+ AG QA +M P ILA QH+ I + + + + ++ Sbjct: 277 RLLQGDVGSGKTVVAVFAIYAAITAGYQAALMVPTEILANQHFGKIAELLRPFGVRIALL 336 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 T + +R+ +A G +++IGTHAL Q S+++ L LVI+DEQHRFGV QR KL Sbjct: 337 TSSTKAMEKREIYRELADGTLNVVIGTHALIQPSLKFKNLGLVIIDEQHRFGVNQRQKLM 396 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 K P +L MTATPIPRTL LT+ G++D+S+I PAGRKPI + + +D+V+ ++ Sbjct: 397 IKGENPDLLAMTATPIPRTLALTAYGEMDVSEIRHLPAGRKPIVSEWVTSTHLDQVLAKI 456 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVM 534 K LS+G + Y + P IEE + + ++ E L +F + ++HG+MS DK+ +M Sbjct: 457 KEQLSQGFQIYVVTPLIEESENIDLKNAKELCLKLQSYFNHEKVVLLHGQMSGEDKDQIM 516 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F G +L+AT+VIEVG+DV +A++++I +A+ FGL+QLHQLRGR+GRG S C Sbjct: 517 TDFSEGNIDILVATSVIEVGVDVPNANMMVIFDADRFGLSQLHQLRGRIGRGRTESFCYF 576 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 + P + R+ ++ +T +GF ++EEDLK R +G++ G QSG+P+F + + Sbjct: 577 VADPK-TDIGKKRMEIISSTSNGFKLSEEDLKLRGQGDLFGKAQSGIPEFRLGDLVNDYN 635 Query: 655 LLEIARKDAKHILTQDPDL 673 + +A+ A+ ++ DPDL Sbjct: 636 TMVVAQNVARQLVKADPDL 654 >gi|116629428|ref|YP_814600.1| RecG-like helicase [Lactobacillus gasseri ATCC 33323] gi|116095010|gb|ABJ60162.1| ATP-dependent DNA helicase RecG [Lactobacillus gasseri ATCC 33323] Length = 679 Score = 356 bits (913), Expect = 9e-96, Method: Compositional matrix adjust. Identities = 222/673 (32%), Positives = 375/673 (55%), Gaps = 30/673 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67 LF P++ +GVG K + L+ + IN DLLFY P + D P + +I + Sbjct: 8 LFEPVTELKGVGAKTATALAGLGINT-------IYDLLFYFPFRYDDLETIP-LDQIEDG 59 Query: 68 RIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123 + V + G + S F +K R +K+ ++ +I ++ F+ + LK+ G+++ Sbjct: 60 QKVLLKGIVVTDPFVSRFGYRKTRLSFKMKIDH---DIIMVNFFNQP-WLKDKVESGKEV 115 Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-L 182 V GK + + + + ++ F +YS+ L + +K+I AL L Sbjct: 116 AVYGKYQVARQSL---SGFKLVAEKKESGFA---PIYSVNRHLKQNKLQKLIDLALEEVL 169 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 P + E I L +K S +H+P+ + + AR + E Q+ L Sbjct: 170 PEVGETIPAALREKYRLLSDQILVEKMHHPKNGNEAKL---ARRSAIFREFFLFQVQLAQ 226 Query: 243 MRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 + Q +++ G+ + +++++ IPF + Q+ + +I D+ +M R+LQGD Sbjct: 227 LLSQRDEDVPGVEKRYDLAAVKELIQAIPFELSDDQKKVVNEIFADLHSPRQMKRLLQGD 286 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VA+ A+ A + AG QA +M P ILAQQH+ + + + + V ++TG+ + Sbjct: 287 VGSGKTVVAVFAIYATITAGFQAALMVPTEILAQQHFAKVDELLRPLGVRVALLTGDTKE 346 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 +++ +A G +++IGTHAL Q + + L LVI+DEQHRFGV QR L +K AP Sbjct: 347 LEKKEIYRELADGTINVVIGTHALIQKDVHFKNLGLVIIDEQHRFGVNQRNTLIKKGVAP 406 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL MTATPIPRTL LT GD+ +S+I P GRKP+ + +++ EV+E ++ L + Sbjct: 407 DVLAMTATPIPRTLALTVYGDMAVSEIRHLPKGRKPVVSSWATSSKLKEVLELMRSQLEK 466 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540 G + Y + P I E ++S+ ++ + L +F ++ ++HG+M K +MDSF G Sbjct: 467 GFQIYVVTPLISESEKSDLKNAEDLQARLAHYFKDENVVLLHGQMKGDQKNEIMDSFAAG 526 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+ S C+ + P Sbjct: 527 KIDILVTTSVIEVGVDVPNANMMVIFNADRFGLSQLHQLRGRIGRGQTQSFCVFVSDPK- 585 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 ++ R++++ +T +GF +AEEDLK R EG++ G QSG+P+F + + L A+ Sbjct: 586 TEIGKKRMNIITSTSNGFKLAEEDLKLRGEGDVFGKAQSGLPQFQVGDVVNDYNTLVTAQ 645 Query: 661 KDAKHILTQDPDL 673 K+A+ ++ DP+L Sbjct: 646 KEARALVKADPNL 658 >gi|119961125|ref|YP_948203.1| ATP-dependent DNA helicase RecG [Arthrobacter aurescens TC1] gi|119947984|gb|ABM06895.1| putative ATP-dependent DNA helicase RecG [Arthrobacter aurescens TC1] Length = 751 Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 242/750 (32%), Positives = 388/750 (51%), Gaps = 85/750 (11%) Query: 17 RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76 R +GK+ + + K + A LL Y P ++ R I+++ + VT+ + Sbjct: 11 RRIGKRSAAVIDKHLGLKTAGA-----LLNYFPRRYLSRGELTPINKLPLDEEVTLIARV 65 Query: 77 SQHSSFQLQKRRP--YKILLND--------GTGEITLLFFYR-KTEMLKNVFFEGRKITV 125 +S+ Q++ RR +++ D GT +++ +R K E+L GR+ Sbjct: 66 LSNSTRQMRARRGSITDVVVTDEAGGGGVPGTLKVSFFNGFRAKAELLP-----GRRAMF 120 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQ-----DVNFPLIEA----VYSLPTGLSVDLFKKIIV 176 +GK+ + + + +P ++ + V+ + A VY L+ K+I Sbjct: 121 SGKVTRYGGALGLTNPDFLLLDEDPEAEGSVDPEKLAAMPIPVYPATAKLTSWSIHKVIT 180 Query: 177 EALSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234 L + + L + + + ++++ + S+AEA+ +IH+P AKD++ A+ER Y E L Sbjct: 181 ALLQTMDLDSLEDPLPESIVRRDALLSVAEAYRLIHSPDIAKDWQR---AQERFRYQEAL 237 Query: 235 AGQIALLLMRKQFKKEIGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 Q AL R Q E + K +N+PF+ T Q + K + +++ + Sbjct: 238 VLQTALARRRAQLAAEEATARRPRADGLLSKFDQNLPFTLTAGQSAVGKTLAEELGRDTP 297 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY--------- 344 M R+LQG+VGSGKT+VAL AM V+AGGQA ++AP +LA QH+ I+K Sbjct: 298 MNRLLQGEVGSGKTIVALRAMLQVVDAGGQAALLAPTEVLAAQHFHSIRKTLGPLARDHI 357 Query: 345 --------TQNTQ--IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394 +TQ + V ++TG+MP A R++A+ A G A I+IGTHAL D + Sbjct: 358 FGGAGMLGGDSTQEAVQVTLLTGSMPTAARKQAMLDAASGNAGIVIGTHALLSDKTSFQD 417 Query: 395 LILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L L++VDEQHRFGV+QR L KA PH+L+MTATPIPRT+ +T GD++ S + E PA Sbjct: 418 LGLIVVDEQHRFGVEQRDALRAKAQRPPHLLVMTATPIPRTVAMTVFGDLETSILDELPA 477 Query: 454 GRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR-------- 501 GR PI T ++ + +D + +R + + G + Y +CP+I + +F Sbjct: 478 GRAPISTHVVGLAENPGWVDRIWKRSREEVDSGHQVYVVCPKIGSDDDGDFSPGEAEPSD 537 Query: 502 ----------------SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545 +VVE +A +HGR K M SF + K+L Sbjct: 538 AELADEGPARELASVTAVVESLLQEPALAGVPVAPLHGRQDPQVKSETMASFASNNTKVL 597 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 ++TTVIEVG+DV +A++++I +A+ FG++QLHQLRGRVGRG +C+L+ S Sbjct: 598 VSTTVIEVGVDVHNATLMVILDADRFGISQLHQLRGRVGRGGLPGTCLLVTTLEPGHPSR 657 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAK 664 RL + +T DGF +++EDLK R+EG+ILG QSG L + + H+ ++ AR DA+ Sbjct: 658 RRLDAVASTTDGFELSQEDLKLRREGDILGASQSGGRSTLKLLRVLEHEEIIARARTDAQ 717 Query: 665 HILTQDPDLTSVRGQSIRILLYLYQYNEAF 694 ++++DP L + I YL EAF Sbjct: 718 GLVSEDPALDHQPVLAAAIDEYLNPEKEAF 747 >gi|329729981|gb|EGG66372.1| ATP-dependent DNA helicase RecG [Staphylococcus epidermidis VCU144] Length = 593 Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 203/552 (36%), Positives = 324/552 (58%), Gaps = 19/552 (3%) Query: 123 ITVTGKIKKLKNRIIMVHPHYIF----HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 +T+ GK + K I + + IF N +D + +E +Y + G+ + I +A Sbjct: 27 VTIKGKWNRNKQEI---NGNRIFFKDQKNQEDTH---LEPIYRIKEGIKQKQLRDNIRQA 80 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 LS + + EW+ DL +K ++A +H+P ++ AR A+ EL ++ Sbjct: 81 LSDVTI-HEWLTDDLREKYKLETLAYTIQTLHHPINKQNL---LRARRTYAFTELFMFEL 136 Query: 239 AL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 + L R + + I IN + ++ + ++PF T +Q+ ++ +I +D+ RM R+ Sbjct: 137 RMQWLNRLEKTSDEAIEINYDINKVKQFIDSLPFELTDAQKVSVNEIFRDLKAPIRMHRL 196 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 LQGDVGSGKT+VA I M A AG Q+ +M P ILA+QH E + + NT + V ++TG Sbjct: 197 LQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEILAEQHAESLIQLFGNT-MNVALLTG 255 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 ++ RR LE++ +G +IGTHAL QD + + + LVI DEQHRFGV QR L +K Sbjct: 256 SVKGKKRRLLLEQLENGTIDCLIGTHALIQDDVVFNNVGLVITDEQHRFGVNQRQILREK 315 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 +VL MTATPIPRTL ++ G++D+S I + P GRKPIKT + D+V+ ++ Sbjct: 316 GAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIKTSWAKHEQYDQVLAQMSN 375 Query: 478 VLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMD 535 L +G++AY ICP IE + + ++VV + SL + + ++HG+MS DK+ VM Sbjct: 376 ELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQSDYGNEKVGLLHGKMSAEDKDQVMQ 435 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F +L++TTV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E S C+L+ Sbjct: 436 KFSKHEIDILVSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLI 495 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 P ++ R++++ T DGF ++E DL+ R G+ G+KQSG+P FL+A + Sbjct: 496 ASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANVVEDYRM 554 Query: 656 LEIARKDAKHIL 667 LE+AR +A ++ Sbjct: 555 LEVARDEAAELI 566 >gi|331701488|ref|YP_004398447.1| ATP-dependent DNA helicase RecG [Lactobacillus buchneri NRRL B-30929] gi|329128831|gb|AEB73384.1| ATP-dependent DNA helicase RecG [Lactobacillus buchneri NRRL B-30929] Length = 676 Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 236/674 (35%), Positives = 368/674 (54%), Gaps = 53/674 (7%) Query: 13 LSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 + +GVG+K +K+ IN N DLL Y+P + D + + + ++ VT Sbjct: 8 VGVLKGVGEKRLTAFNKLGINTIN-------DLLTYYPRRYDDLSLKDLRTAVDGQK-VT 59 Query: 72 ITGYISQHSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 + G + + + RR + + +ND EI + F+ + + K + E ++ + G Sbjct: 60 VKGIVISEPTVRFFGRRKSRLGFHLKIND---EIYNVTFFNQPWLKKQLELEA-QVIIFG 115 Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-----L 182 + +N+I I + + + +++Y + + K++I + Sbjct: 116 TFDRNRNQI---QGMKILNGEKSDTY---DSIYPSNKEVKQNTIKQLIKLGFDEYQDQLV 169 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE-------LLA 235 V+PE I K S + IH P TSP + A+ L A Sbjct: 170 DVIPESIRT----KYRLESFHDTIQNIHFP--------TSPVAAQKAFRTAKFMEFFLFA 217 Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 +I +L R + K + + + + + + F T SQ + +IL D+ + M Sbjct: 218 MKIQILKQRHR-KPDPAAKVTYDPDLVGQFTSQLKFKLTDSQNKVVNEILTDLGKPLEMN 276 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R+LQGDVGSGKT+VA IA+ AA+ AG QA IMAP ILA+QH K + I + ++ Sbjct: 277 RLLQGDVGSGKTVVAAIAILAAISAGKQAAIMAPTEILAEQHANTFAKLFEKFDINIALL 336 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 TG R+ L RIA G+ ++I+GTHALFQD + Y+ L L ++DEQHRFGV QR L Sbjct: 337 TGATTGLARKAMLPRIADGEVNLIVGTHALFQDQVDYHDLGLAVIDEQHRFGVNQRQALR 396 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 K + ++L MTATPIPRTL +T GD+D+S I E P GRKPIKT I + D I + Sbjct: 397 LKGNSTNMLAMTATPIPRTLAITMYGDMDVSVIDELPKGRKPIKTTWITSAKTDSAIRFV 456 Query: 476 KVVLSEGKKAYWICPQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532 K L G + Y + P IEE + N ++ +RF ++ E S+ ++HGRMSD +K++ Sbjct: 457 KKQLDAGNQVYVVTPLIEESEAVDMKNAMAIFDRFKAIFEP-QYSVGLLHGRMSDEEKDT 515 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 M FKN ++L+ATTVIEVG+DV +A+ ++I +A+HFGLAQLHQLRGRVGRG+ S C Sbjct: 516 AMADFKNNQFQVLVATTVIEVGVDVTNANTMLIFDADHFGLAQLHQLRGRVGRGDTQSYC 575 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 IL+ P ++ R++ + ++ DGF ++++DL+ R +G+I G KQSGMP F +A P Sbjct: 576 ILIADPK-NELGKKRMTAVASSTDGFFLSQKDLELRGQGDITGSKQSGMPDFKVADPVGD 634 Query: 653 DSLLEIARKDAKHI 666 ++L++A ++A+ I Sbjct: 635 LNILQVANQEAQSI 648 >gi|238852577|ref|ZP_04642987.1| ATP-dependent DNA helicase RecG [Lactobacillus gasseri 202-4] gi|238834723|gb|EEQ26950.1| ATP-dependent DNA helicase RecG [Lactobacillus gasseri 202-4] Length = 679 Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 222/673 (32%), Positives = 375/673 (55%), Gaps = 30/673 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67 LF P++ +GVG K + L+ + IN DLLFY P + D P + +I + Sbjct: 8 LFEPVTELKGVGAKTATALAGLGINT-------IYDLLFYFPFRYDDLETIP-LDQIEDG 59 Query: 68 RIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123 + V + G + S F +K R +K+ ++ +I ++ F+ + LK+ G+++ Sbjct: 60 QKVLLKGIVVTDPFVSRFGYRKTRLSFKMKIDH---DIIMVNFFNQP-WLKDKVESGKEV 115 Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-L 182 V GK + + + + ++ F +YS+ L + +K+I AL L Sbjct: 116 AVYGKYQVARQSL---SGFKLVAEKKESGFA---PIYSVNRHLKQNKLQKLIDLALEEVL 169 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 P + E I L +K S +H+P+ + + AR + E Q+ L Sbjct: 170 PEVGETIPAALREKYRLLSDQILVEKMHHPKNGNEAKL---ARRSAIFREFFLFQVQLAQ 226 Query: 243 MRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 + Q +++ G+ + +++++ IPF + Q+ + +I D+ +M R+LQGD Sbjct: 227 LLSQRDEDVPGMEKRYDLAAVKELIQAIPFELSDDQKKVVNEIFADLHSPRQMKRLLQGD 286 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VA+ A+ A + AG QA +M P ILAQQH+ + + + + V ++TG+ + Sbjct: 287 VGSGKTVVAVFAIYATITAGFQAALMVPTEILAQQHFAKVDELLRPLGVRVALLTGDTKE 346 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 +++ +A G +++IGTHAL Q + + L LVI+DEQHRFGV QR L +K AP Sbjct: 347 LEKKEIYRELADGTINVVIGTHALIQKDVHFKNLGLVIIDEQHRFGVNQRNTLIKKGVAP 406 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL MTATPIPRTL LT GD+ +S+I P GRKP+ + +++ EV+E ++ L + Sbjct: 407 DVLAMTATPIPRTLALTVYGDMAVSEIHHLPKGRKPVVSSWATSSKLKEVLELMRSQLEK 466 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540 G + Y + P I E ++S+ ++ + L +F ++ ++HG+M K +MDSF G Sbjct: 467 GFQIYVVTPLISESEKSDLKNAEDLQARLAHYFKDENVVLLHGQMKGDQKNEIMDSFAAG 526 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+ S C+ + P Sbjct: 527 KIDILVTTSVIEVGVDVPNANMMVIFNADRFGLSQLHQLRGRIGRGQTQSFCVFVSDPK- 585 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 ++ R++++ +T +GF +AEEDLK R EG++ G QSG+P+F + + L A+ Sbjct: 586 TEIGKKRMNIITSTSNGFKLAEEDLKLRGEGDVFGKAQSGLPQFQVGDVVNDYNTLVTAQ 645 Query: 661 KDAKHILTQDPDL 673 K+A+ ++ DP+L Sbjct: 646 KEARALIKADPNL 658 >gi|325290432|ref|YP_004266613.1| ATP-dependent DNA helicase RecG [Syntrophobotulus glycolicus DSM 8271] gi|324965833|gb|ADY56612.1| ATP-dependent DNA helicase RecG [Syntrophobotulus glycolicus DSM 8271] Length = 768 Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 229/623 (36%), Positives = 356/623 (57%), Gaps = 24/623 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 +LL ++P + R R I+E+ + I +TG +S S + + K+ + I Sbjct: 131 ELLQHYPRRYEIRTSR-LINELQDGEIAVVTGTVS-GSQISRGRVKVTKLRIEQDGSYID 188 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162 ++F + + F G +++TGK++ ++ + I + D I A+Y Sbjct: 189 AVWFNQT--HIPRQFPAGSVVSITGKVQ-WNKKVPELLATEIEKGNNDRQRTEIVAIYPE 245 Query: 163 PTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIH---NPRKAKDF 218 L+ + I+ A +++ + PE + Q + EA IH +P KAK Sbjct: 246 TARLNSKAIRFIMRNASAQIEEIFPEVFPDEDCQ--GWLKRPEAIREIHFPSSPEKAK-- 301 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-IAQKILRNIPFSPTKSQ 277 ARERL +E+L Q+A+ +R P+ +GK + K L + F T++Q Sbjct: 302 ----IARERLIIEEILFFQLAIAELRDPVSGNSS-PVLQKGKELLHKWLHILEFQLTRAQ 356 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + I +I +DM+ M R++QGDVGSGKT VA+ A+ AV +G Q +M P +LA QH Sbjct: 357 KRVIGEIFRDMATTRGMTRLVQGDVGSGKTAVAMAALLQAVGSGYQGAMMVPTEVLALQH 416 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y + + Q + ++ G+ ++ R + L + G+ +I+GTHAL QD ++Y+ L L Sbjct: 417 YHSLTRVFQPLGVRAALLLGSQGKSEREEILVDLEQGKIDVIVGTHALIQDQVRYHALGL 476 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 V+ DEQHRFGV+QR +L K +PHVL+MTATPIPRTL LT GD+ +S I E PAGRKP Sbjct: 477 VVTDEQHRFGVRQRTRLQDKGESPHVLVMTATPIPRTLALTLYGDLQLSVIDEMPAGRKP 536 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516 + T + ++ + L+ ++ G++ + +CP ++E ++++F S E+ L E F + Sbjct: 537 VMTRKMTERSRAQLEKFLEQQVAAGRQIFVVCPLVQETEKTDFISATEKARVLAERFPAW 596 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 +A++HGRM +KE VM F G +L++TTVIEVG++V +A++++IENAE FGLAQL Sbjct: 597 KVALLHGRMKGQEKEEVMRRFHQGEINILVSTTVIEVGVNVPNATVMVIENAERFGLAQL 656 Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636 HQLRGRVGRG+ S CIL+ S++S RL+VL TEDGF IAEEDLK R GE+LG+ Sbjct: 657 HQLRGRVGRGDHQSFCILVSE---SRDS-ARLNVLCETEDGFKIAEEDLKLRGPGELLGL 712 Query: 637 KQSGMPKFLIAQPELHDSLLEIA 659 +Q G + +A L+E A Sbjct: 713 RQHGAAELKLADLARDGRLVEKA 735 >gi|227504426|ref|ZP_03934475.1| possible DNA helicase RecG [Corynebacterium striatum ATCC 6940] gi|227199074|gb|EEI79122.1| possible DNA helicase RecG [Corynebacterium striatum ATCC 6940] Length = 704 Score = 355 bits (911), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 238/680 (35%), Positives = 370/680 (54%), Gaps = 78/680 (11%) Query: 44 LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILL-----NDGT 98 LL ++P +I + + +E VT+TG + +LQ+R K L ++G Sbjct: 34 LLSHYPRDYIRHNKEVGLGGANEGDYVTVTGQV-----LRLQQRNTGKAFLLTLSMDNG- 87 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI-----------FHN 147 IT FF L V +G ++ ++GK+K + + + HP ++ + Sbjct: 88 --ITATFF--NAHYLTRVLRQGMRLMLSGKLKFFRGQPQLQHPDFVIIDAGGQSDALYDV 143 Query: 148 SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP------EW-----IEKDLLQK 196 + P ++A SL ++++ + +PV P W I L Sbjct: 144 DDSASGPKLKATGSLRNLSQFGQLEQLLEQEW--IPVYPASGKVTSWYIMGAIHMVLANT 201 Query: 197 KSFP---------SIAEAFNIIHNPRKAKDFEWTSPAR--ERLAYDELLAGQIALLLMRK 245 P S+ +A IH P A P R +RL Y+E L+ I + L ++ Sbjct: 202 PPIPEPLDYRMMVSLDQAVREIHQPTAA------GPERAIQRLKYNEALSIGIVMALRQR 255 Query: 246 --QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 Q + + +P +EG ++L N+PF T Q I +I D+S M+R+LQG+VG Sbjct: 256 DSQARTAVAMPAILEG-YRDELLANLPFELTAGQRQVIGEIDADLSGTLPMMRLLQGEVG 314 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA AM AV+AG QA ++AP +LA QH I + V ++TG+M A Sbjct: 315 SGKTMVATCAMLQAVDAGKQAALLAPTEVLAAQHAASISASVP-AGVTVTLLTGSMRTAQ 373 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL---TQKATA 420 +R+AL I G+A I+IGTHA+ QD+++++ L LV+VDEQHRFGV+QR L T++ + Sbjct: 374 KRQALLDIVSGEADIVIGTHAIIQDTVEFFDLGLVVVDEQHRFGVEQRDSLRNKTREGIS 433 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP---INRIDEVIERLKV 477 PH+L+MTATPIPRT+ +T GD+ +S + E P GRKPI++ ++P + + R++ Sbjct: 434 PHLLVMTATPIPRTIAMTVFGDLAVSTLKELPGGRKPIQSNVVPEWAPAWVQRALARIRE 493 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTSSIAIIHGRMSDIDKESVMDS 536 ++ G +AY +CP+IE E V E+ S + T + I+HGRM+D KE VM+ Sbjct: 494 EVAAGHQAYIVCPRIE--GEGGVLEVAEQLESGPLQRLT--VDILHGRMAD--KEEVMNR 547 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F G +L++TTVIEVG+DV +A++++I +EHFG++QLHQLRGRVGRG S C L+ Sbjct: 548 FSRGETDVLVSTTVIEVGVDVPNATVMLIRESEHFGVSQLHQLRGRVGRGGNASIC--LF 605 Query: 597 HPPLSKN--SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD- 653 H ++N ++ R+ + +T GF +AE DLKQR EG+ILG QSG + L D Sbjct: 606 HTTAAENTPTFKRIMQIADTTSGFELAELDLKQRHEGDILGTVQSGTQRSLKLLDLAQDR 665 Query: 654 SLLEIARKDAKHILTQDPDL 673 ++E DA ++ ++P L Sbjct: 666 DIVERTHDDAFALVQRNPQL 685 >gi|227488102|ref|ZP_03918418.1| possible DNA helicase RecG [Corynebacterium glucuronolyticum ATCC 51867] gi|227541499|ref|ZP_03971548.1| possible DNA helicase RecG [Corynebacterium glucuronolyticum ATCC 51866] gi|227091964|gb|EEI27276.1| possible DNA helicase RecG [Corynebacterium glucuronolyticum ATCC 51867] gi|227182781|gb|EEI63753.1| possible DNA helicase RecG [Corynebacterium glucuronolyticum ATCC 51866] Length = 702 Score = 355 bits (911), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 219/668 (32%), Positives = 363/668 (54%), Gaps = 44/668 (6%) Query: 35 NANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK-RRPYKIL 93 N T +LL +P +ID + + IVT G I++ S +K + + + Sbjct: 25 NFGITSVPELLLNYPRRYIDSAQGTALIGAQDGDIVTAIGTITRTWSTTTRKGMKIFHVT 84 Query: 94 LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153 ++DG E+T +FF + L +V EG ++ VTGK+K + + + HP ++ NS Sbjct: 85 VDDGGVEVTCVFF--NSAYLSHVLIEGSRVLVTGKVKSYQGKPQLSHPGFLVLNSTHKGT 142 Query: 154 PLIEAVYSLPTGLSVDLFKKI-------IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206 I+ + P + +++ I S P + W + +++ P I+E Sbjct: 143 GQIKELSKYPDAEGI--LRRLTASPWTPIYRGTSSFPSMRMWAATSEVLRQT-PHISEPL 199 Query: 207 NIIHNPRKAKDFEW----------TSP--ARERLAYDELLAGQIALLLMR---KQFKKEI 251 P + DF+ SP +R Y+E L+ + + L+R + Sbjct: 200 GT--PPEEMVDFDTMLRGMHVPSTVSPYACEQRARYNEALSLSLVMALLRDDQSHRRAHP 257 Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 P++ G Q+ + ++P++ T Q+S +++I D+++ M R+LQG+VGSGKT+VAL Sbjct: 258 CAPLDDGGSRRQQFIESLPYTLTDGQQSVVQEISSDLAKPTPMSRLLQGEVGSGKTVVAL 317 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 I+M ++AG Q +AP +LAQQH + + V +TG+M A ++ AL + Sbjct: 318 ISMLQVIDAGHQTAFLAPTEVLAQQHARSLTQLLGAVPARVVCLTGSMTVAQKKDALLKT 377 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTA 428 G+A I++GTHAL QD+++++ L +VIVDEQHRFGV+QR L + T PH+L MTA Sbjct: 378 ISGEADIVVGTHALIQDTVEFFDLGMVIVDEQHRFGVEQRDMLRNRGTNGITPHLLAMTA 437 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKA 485 TPIPRT+ +T+ GD+++S +TE P GRKPI++ ++ ++ ER++ + +G +A Sbjct: 438 TPIPRTIAITAFGDLEVSLLTELPGGRKPIRSAVVFEGNDAWMNRAWERIREEVQQGHQA 497 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCK 543 + +CP+I+ V E + L ++A++HG++ DKE +M +F G Sbjct: 498 FIVCPRIDGPG-----GVEEVYELLEGQIYPDLAVALLHGKLHPDDKEEIMTAFGKGQID 552 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVGIDV +A+I+++ +E+FG++QLHQLRGR+GRG S C+ Sbjct: 553 ILVSTTVIEVGIDVPNATIMMVRESENFGVSQLHQLRGRIGRGGYESWCLFHTLALPDSE 612 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKD 662 Y RL + NT DG+ +A DL+ R+EG+I+G QSG K + D L+E A K Sbjct: 613 QYARLCAIANTNDGYTLATLDLETRQEGDIIGTSQSGSRKQVRLLSFARDGELIEHANKH 672 Query: 663 AKHILTQD 670 A ++ D Sbjct: 673 ADELVHAD 680 >gi|148244970|ref|YP_001219664.1| ATP-dependent DNA helicase RecG [Candidatus Vesicomyosocius okutanii HA] gi|146326797|dbj|BAF61940.1| ATP-dependent DNA helicase RecG [Candidatus Vesicomyosocius okutanii HA] Length = 688 Score = 355 bits (911), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 223/640 (34%), Positives = 349/640 (54%), Gaps = 15/640 (2%) Query: 44 LLFYHPSSFIDRHYRPKISE--ISEERIVTIT-GYISQHSSFQLQKRRPYKILLNDGTGE 100 LLF P+ + D+ K+++ I +E ++ +T Y Q S+ Q Q L+D Sbjct: 33 LLFQLPTHYQDKTKLAKLNQVQIGDEVLIQLTIKYTEQVSTHQKQ----LLCYLSDSNHR 88 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF--PLIEA 158 LL F+ + K F G I G+IK +N + + +P Y + N + Sbjct: 89 NLLLRFFYFNQYQKQNFIRGDIIQCFGEIKMGQNSLEIHNPEYRLISKGQANLLEKTLSP 148 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 +Y L + KK I AL L + L + P++ +A N +H+P+ + Sbjct: 149 IYPLTANIRQAQMKKWIDTALEVLQQSDLFDNFKNLTNNTMPTLKQALNTLHHPKVDDNI 208 Query: 219 EWTSP----ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274 + + +++RL +EL +++LL ++ + K +I ++ ++ QK L + F T Sbjct: 209 KQIANFKHFSQQRLIIEELCTQRLSLLKLKSKRKSKISNIFKIKNRLTQKALDTLKFQLT 268 Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334 ++Q+S I DI D+S + MLR+LQGDVGSGKT++A+ A A+E G Q I+AP ILA Sbjct: 269 QAQQSCINDINSDLSSNHPMLRLLQGDVGSGKTIIAVFACLQAIENGFQTTIIAPTEILA 328 Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394 QH + Y I + +T + + K LE+I A IIIGTH L Q + + K Sbjct: 329 AQHLQGFSNYLTPLGIDIAFLTDSQSAIQKSKQLEKINSDTARIIIGTHVLLQTKVVFDK 388 Query: 395 LILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L LVI++EQH+FGV Q L L QK+ PH L++TATPIP++L ++ D+D S I E P Sbjct: 389 LGLVIINEQHKFGVHQCLSLVQKSHNTPHQLVITATPIPKSLTISVYADLDYSIIDELPT 448 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 GR P T+++ ++ ++VIE++K V + G + YW+C IEE + S N L ++ Sbjct: 449 GRTPTNTIVLGNDKKNKVIEKIKQVCNIGNQVYWVCTLIEESEVLRTESATNTHNYLKKN 508 Query: 514 FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 ++ +I+GRM K +++ F G +L+ATT IE G+++++ S+++IEN+E G Sbjct: 509 LEGLTVVLINGRMQKYKKSNIIAQFLKGEIDVLVATTEIEAGVNIINTSLLVIENSERLG 568 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 L QLHQLR RVGR + S CIL+Y PLS N+ RL +L+ T DGF IA +DL+ R E Sbjct: 569 LTQLHQLRSRVGRSLDASICILMYQAPLSYNAIERLDILRKTNDGFKIALKDLELRGPSE 628 Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 ILG +Q G+ IA LL+ + +K L D + Sbjct: 629 ILGTQQIGITNMKIANIVRDRYLLKQVQSYSKQFLKLDKN 668 >gi|302337840|ref|YP_003803046.1| ATP-dependent DNA helicase RecG [Spirochaeta smaragdinae DSM 11293] gi|301635025|gb|ADK80452.1| ATP-dependent DNA helicase RecG [Spirochaeta smaragdinae DSM 11293] Length = 707 Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 235/717 (32%), Positives = 360/717 (50%), Gaps = 65/717 (9%) Query: 5 FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64 FL L P++ GVGKK + L+++ DLL P + DR I Sbjct: 2 FLGELRKPVTVLHGVGKKSTERLARL------GVRHIADLLRLLPRQWEDRSRLVPIVRA 55 Query: 65 SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124 + R I H F + K+ + D T LL F R F G K+ Sbjct: 56 GDARPALTVVEIVAHDWFGKPHNQTLKVFVQDETSVAVLLCFNRN-------FLAG-KLP 107 Query: 125 VTGKIKKLKNRIIMVHP-HYIFHNSQDVNFPLIEA------------------------- 158 V RI++ P + F Q +F + A Sbjct: 108 VGA-------RILLYAPLQHRFGELQAASFDFVPAGKYPLTREEDYLSEVPKISGRGGIG 160 Query: 159 ----VYSLPTGLSVDLFKKIIVEALSRL-----PVLPEWIEKDLLQKKSFPSIAEAFNII 209 VY L GL+ + ++ +A+ LPE I +D P +AEA +I Sbjct: 161 SILPVYPLTEGLTQGALRDLMQQAMEGFGKFVDDELPEAIRRD----HGLPHLAEALVMI 216 Query: 210 HNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269 H PR+ ++ E R+ LA++EL Q A+ K++ + +E + + +R++ Sbjct: 217 HRPRRIEEPEE---GRKALAFNELFHLQCAVTRRGALRKRKERPSLALETGLVDRCIRDL 273 Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PFS T Q+ A+++I++D+ + M R+LQGDVGSGKTL AL++ +EAG Q MAP Sbjct: 274 PFSLTADQKQAVEEIIEDLKRPYPMARLLQGDVGSGKTLTALLSALPIIEAGYQVAFMAP 333 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QH E + + + + TG++P R++ L + G+ +++GTH LF S Sbjct: 334 TELLARQHAENSARILAPLGVRIALFTGSIPSPARKELLVALQEGEIDLVVGTHTLFSSS 393 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +++ +L I+DEQH+FGV QR L K P +L MTATPIPRT+ LT+ GD+ +S I Sbjct: 394 VRFRRLRYCIIDEQHKFGVMQRQGLLDKGEFPDLLTMTATPIPRTMALTAFGDLAVSVIR 453 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P GRKPI T + + +V ++ L G +AY++ P IEE S + Sbjct: 454 TMPPGRKPIITHLAKVENRPKVYAAVEKELERGGQAYFVYPLIEEGSREKIDSAESMYRL 513 Query: 510 LHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 L E IA++H R+ + KE M F +G +L+AT+V+EVG+D +AS ++IE+ Sbjct: 514 LREEVFPQRRIALLHSRIDEEIKEREMGRFLSGELDILVATSVVEVGVDAPNASCMVIEH 573 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627 AE FGL+ LHQLRGRVGR + S C L++ L++ RL ++K DGF+IAEEDLK Sbjct: 574 AEQFGLSALHQLRGRVGRSDRQSYCFLVFSEGLTETGKQRLRIMKENNDGFVIAEEDLKL 633 Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684 R GE+ G++Q+G+ A +LE +RK+A I++ D +L Q ++ L Sbjct: 634 RGPGELSGMRQAGVLNLQFADLLKDGEILEASRKEATAIVSGDFELEHADHQVLKRL 690 >gi|15639674|ref|NP_219124.1| ATP-dependent DNA helicase RecG [Treponema pallidum subsp. pallidum str. Nichols] gi|189025912|ref|YP_001933684.1| ATP-dependent DNA helicase RecG [Treponema pallidum subsp. pallidum SS14] gi|3914635|sp|P96130|RECG_TREPA RecName: Full=ATP-dependent DNA helicase recG gi|1732243|gb|AAB38707.1| RecG [Treponema pallidum] gi|3322991|gb|AAC65656.1| DNA recombinase (recG) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018487|gb|ACD71105.1| DNA recombinase [Treponema pallidum subsp. pallidum SS14] gi|291060053|gb|ADD72788.1| ATP-dependent DNA helicase RecG [Treponema pallidum subsp. pallidum str. Chicago] Length = 686 Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 226/691 (32%), Positives = 371/691 (53%), Gaps = 38/691 (5%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P+S +G GK L ++ N + D+L Y P + DR S+ + + Sbjct: 9 PVSVLKGTGKVVLAQLERL------NISTIGDILSYWPRLWEDRTQEQMFSQWTLAHRLQ 62 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + ++ H F K + K+++ DG G + L +R+ L +F G + V G + Sbjct: 63 VRVSVTAHCWFGFGKSKTLKLVVQDGQGCVAELLCFRRN-FLHFMFPVGSEAVVYGSFYE 121 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIE 190 K+ ++ I D I VY L GL + +I A+ + + + + Sbjct: 122 -KDGLLESSSFDI--EKIDCIEKKILPVYPLTKGLKQMKLRMLICAAMDQWIGTVDSELP 178 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA----------- 239 K +L+K + + +H PR D + + L ++E + Q+ Sbjct: 179 KPILEKYHLLTKRDVLLSMHTPRTLDD---VAKGKHSLIFEEFFSLQMTIGMRSLQKRGR 235 Query: 240 LLLMRKQFKKEIGIPINVE--GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 L L + + ++ IP V + +K+ R +PF T Q+ I +I QD+ ++ M R+ Sbjct: 236 LPLTQGESDQQSAIPSVVSELSLLQKKLHRCLPFELTVDQKRVITEITQDLEREEPMARL 295 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 +QGDVGSGKTLVA + +E GGQ ++AP +LA+QH + + I + +TG Sbjct: 296 IQGDVGSGKTLVAFFSCLKIIEQGGQVALLAPTELLARQHADTAARLLAPIGIRLAFLTG 355 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 N+ R LE + G+ ++++GTHALF S++Y+ L LVI+DEQHRFGV QR L QK Sbjct: 356 NVKSEGRAYLLEALVAGEINLVVGTHALFSKSVRYHDLRLVIIDEQHRFGVLQRSALIQK 415 Query: 418 -------ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470 PH+++M+ATPIPRTL L+ GD+DIS I P GRKP+ T I + ++ Sbjct: 416 GREGNPQGKTPHIIMMSATPIPRTLALSVFGDLDISIIKSMPGGRKPVITYIARKTKAEK 475 Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDID 529 V E + + +G++AY+I P+I + ++ +SV + L +F ++A+IH +M++ + Sbjct: 476 VYEFVGNEIEKGRQAYFIYPRIHDIGLTDLKSVQCMYMYLKNYFARYAVAMIHSKMTEEE 535 Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589 ++ +M F GT +L+AT+V+EVG+DV +A+ I+IE+AE FGL+ LHQLRGRVGRG+ Sbjct: 536 QQRIMKYFSEGTVHILVATSVVEVGVDVPNANCIVIEHAERFGLSALHQLRGRVGRGDVQ 595 Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK---QSGMPKFLI 646 S C L++ +++ + RL ++ +T DGF+IAEEDLK R G++ K QSG F + Sbjct: 596 SYCFLMHGDEMTECAKRRLKIMGSTADGFVIAEEDLKLRGPGDVGDTKNFEQSGYSGFRV 655 Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVR 677 A P +L++AR+ A +L ++ + R Sbjct: 656 ADPVRDYPILQVAREAAFELLRKEKGSSEAR 686 >gi|239818026|ref|YP_002946936.1| ATP-dependent DNA helicase RecG [Variovorax paradoxus S110] gi|239804603|gb|ACS21670.1| ATP-dependent DNA helicase RecG [Variovorax paradoxus S110] Length = 709 Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 221/658 (33%), Positives = 363/658 (55%), Gaps = 30/658 (4%) Query: 40 RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99 R ID Y P + D ++++ + + + G +++ + RR ++DG+ Sbjct: 42 RDIDFALYLPMRYEDETRIVRLADTRDGDMAQVEGVVTE-CEVVFRPRRQLIATIDDGSD 100 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIEA 158 L FF K + G ++ V G+++ M+HP + P + Sbjct: 101 TCQLRFFNFYPSQQKQLAV-GARVRVRGEMRGGFVGRQMMHPTV---KAAGTALPQALTP 156 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---- 214 VYS GL + ++ + L+R VL E I + + ++ + + +H P Sbjct: 157 VYSTIAGLPQPVLRREVRSGLAR-AVLDETIPVQIGWRGAW-DLRSSLTFLHYPTPDVAM 214 Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQ---KILRNI 269 A + + PA +R+ +ELLA Q++ L R + ++ +P + E + + ++L + Sbjct: 215 ATLEDHSHPAWQRIKAEELLAQQLSQLQARLERAAQRAPMLPSSAEPQASSLHAQLLAVL 274 Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T +Q+ ++I +D+ ++ M R+LQGDVGSGKT+VA +A A ++AG Q +MAP Sbjct: 275 PFGLTGAQQRVGEEITRDLGREIPMHRLLQGDVGSGKTVVAALAAARCIDAGFQCALMAP 334 Query: 330 IGILAQQHYE----FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 ILA QH+ ++ + V +TG+ + R + G+A ++IGTHA+ Sbjct: 335 TEILAAQHFGKLVGWLDPLLAERGLRVAWLTGSQKKKERDAMSAAVESGEAALVIGTHAV 394 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGD 442 + +++ L L I+DEQHRFGV QRL L KA PH+L+M+ATPIPRTL ++ D Sbjct: 395 ISEKVRFKNLALAIIDEQHRFGVAQRLALRGKAVGHLEPHLLMMSATPIPRTLAMSYYAD 454 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502 +D+S + E P GR PI T ++ +R DEVI+R++ +++G++ YW+CP IEE + + R+ Sbjct: 455 LDVSTLDELPPGRTPIVTKLVADHRRDEVIDRIQAQIAQGRQVYWVCPLIEESEAVDLRN 514 Query: 503 VVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560 E + L + +++ ++H RM +K++VM +F ++L++TTVIEVG+DV +A Sbjct: 515 ATETRDELADALGAAVNVGLLHSRMPTAEKQAVMAAFTANEIQVLVSTTVIEVGVDVPNA 574 Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP----LSKNSYTRLSVLKNTED 616 S+++IE+AE FGL+QLHQLRGRVGRG S+C+LLY P + + + RL + T D Sbjct: 575 SLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYAPGDSGRVGEAARARLKAMAETSD 634 Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 GF IA DL+ R GE LG +QSG P A LL+ AR+ A +L + P+L Sbjct: 635 GFEIARRDLEIRGPGEFLGARQSGAPLLRFADLSTDTMLLDWARELAPLMLDKHPELA 692 >gi|167755898|ref|ZP_02428025.1| hypothetical protein CLORAM_01415 [Clostridium ramosum DSM 1402] gi|167704837|gb|EDS19416.1| hypothetical protein CLORAM_01415 [Clostridium ramosum DSM 1402] Length = 672 Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 193/515 (37%), Positives = 298/515 (57%), Gaps = 7/515 (1%) Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 I +YSL G++ F+ + +AL+ + + + +LL K A N+IH P Sbjct: 134 ITPIYSLKEGITQKSFQGYVKKALNFYHGHIQDEVPTNLLIKHHLIHKELALNLIHFPSN 193 Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274 D A L Y+E L Q+ + ++ K +GI + + + +PF T Sbjct: 194 NGD---VKEALRYLKYEEFLRFQLTMQYIKLSRKDNLGIKKQFNRQTLDEFIAQLPFELT 250 Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334 QE A +++ D+ ++ M R +QGDVGSGKT+V I + A AG Q +MAP ILA Sbjct: 251 FDQEQAALEVINDLQKETMMYRFVQGDVGSGKTVVGAIGLYANYLAGYQGAMMAPTEILA 310 Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394 QHY + K + I + ++TG++ +++ + +G I++GTHALFQ+ + Y K Sbjct: 311 TQHYRSLIKLFKKIDINIALLTGHLSNKEKQRIYNDLENGTIDIVVGTHALFQEKVIYQK 370 Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454 L LVI DEQHRFGV QR L +K ++M+ATPIPRTL ++ GD+D+S I P+G Sbjct: 371 LGLVITDEQHRFGVNQRKALKEKGKQVDFMVMSATPIPRTLAISIYGDMDVSTIKTMPSG 430 Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 RKP+ T + + + ++ RLK L+ G + Y +CP +EE + + R +N + +F Sbjct: 431 RKPVITEVFKTHSMKPILNRLKEYLASGGQCYVVCPLVEESEAIDSRDATGIYNGMKAYF 490 Query: 515 TS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 I ++HG+M D K+ +M +FK ++L++TTVIEVG+DV +A+ I+I NAE FG Sbjct: 491 KEQYQIGLLHGKMDDETKDQIMAAFKANEIQILVSTTVIEVGVDVSNANWIVIYNAERFG 550 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 L+Q+HQLRGRVGR ++ C LL + S+ ++ RL L+N DGF ++ DLK R G+ Sbjct: 551 LSQIHQLRGRVGRSDQQGYCFLLSNSS-SQEAWERLEFLRNCHDGFEVSYYDLKLRGPGD 609 Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 ILG +QSG+P F + ++LEI+RKDA +L Sbjct: 610 ILGNQQSGLPVFSVGNIFEDANILEISRKDALELL 644 >gi|283470439|emb|CAQ49650.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp. aureus ST398] Length = 686 Score = 354 bits (909), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 213/633 (33%), Positives = 354/633 (55%), Gaps = 18/633 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DL+ Y P+ + D +++ ++ VTI G + R K+ ++ I Sbjct: 37 DLVLYLPTRYEDNTV-IDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIA 95 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLK-----NRIIMVHPHYIFHNSQDVNFPLIE 157 + + LK + ITV GK ++K NR+ + DV +E Sbjct: 96 VKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEITGNRVFFSSQGTQTQENADVQ---LE 152 Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 VY + G+ + I +AL+ + + EW+ L +K ++ N +H+P+ Sbjct: 153 PVYRIKEGIKQKQIRDQIRQALNDVTI-HEWLTDGLREKYKLETLDFTLNTLHHPKSK-- 209 Query: 218 FEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276 E AR A+ EL ++ + L R + + I I+ + + + +PF T++ Sbjct: 210 -EGLLRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDLDQVKSFIDRLPFELTEA 268 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q+S++ +I +D+ RM R+LQGDVGSGKT+VA I M A AG Q+ +M P ILA+Q Sbjct: 269 QKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEILAEQ 328 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 H E + ++ + V ++TG++ R+ LE++ +G +IGTHAL QD + ++ + Sbjct: 329 HAESLIALFGDS-MNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFHNVG 387 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 LVI DEQHRFGV QR L +K +VL MTATPIPRTL ++ G++D+S I + P GRK Sbjct: 388 LVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRK 447 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHF- 514 PI T + D+V+ ++ L +G++AY ICP IE + + ++VV + SL +++ Sbjct: 448 PIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQNYG 507 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 S + ++HG++S +K+ VM F N +L++TTV+EVG++V +A+ ++I +A+ FGL+ Sbjct: 508 VSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRFGLS 567 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 LHQLRGRVGR ++ S C+L+ P ++ R++++ T DGF ++E DL+ R G+ Sbjct: 568 TLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPGDFF 626 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 G+KQSG+P FL+A +LE+AR +A ++ Sbjct: 627 GVKQSGLPDFLVANLVEDYRMLEVARDEAAELI 659 >gi|260887360|ref|ZP_05898623.1| ATP-dependent DNA helicase RecG [Selenomonas sputigena ATCC 35185] gi|260862898|gb|EEX77398.1| ATP-dependent DNA helicase RecG [Selenomonas sputigena ATCC 35185] Length = 711 Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 230/663 (34%), Positives = 355/663 (53%), Gaps = 27/663 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L +GVG K L+KI DLL Y+P ++ DR ++ I+ + Sbjct: 33 LLELKGVGAKKYEALNKI------GLFTVYDLLTYYPRTYEDRRVLTPLAAIAVGEQQAV 86 Query: 73 TGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 TG I + + + R IL ++DGTG + + FF +K LK G ++ GKI Sbjct: 87 TGVIRHIA--ERRTGRGIHILSVDIDDGTGFLQVTFFNQK--FLKGKLKAGMQLFAVGKI 142 Query: 130 K-----KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184 + K ++ V + + ++ VY+ L+ F+ ++ + Sbjct: 143 DYAFGGRGKKQMSQVKDFSLMEKGGEAALGIL-PVYAASGSLNQKFFRTLLTGVFQGIGK 201 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 + E + + + Q+ + EA+ +H P E ARERL ++EL Q LLL+R Sbjct: 202 IVETLPESICQRYRLVAREEAYREVHFPESP---EALHLARERLIFEELYLIQCGLLLLR 258 Query: 245 KQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 ++ + K G+ ++++ +PF T+ QE A +DI QDM M R++QGDV Sbjct: 259 RESREKRKGVRHLGASRLSRGAREALPFRLTEDQEKAWRDIRQDMELALPMRRLVQGDVS 318 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT +AL+A+ VE G Q MAP ILA+QH++ + ++ + + ++TG + + Sbjct: 319 SGKTALALLALVKTVENGFQGAFMAPTEILARQHFDKFSELLRDLPVRLLLLTGRLSKKE 378 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPH 422 R A I I+IGTHAL Q+ + + L LV+ DEQHRFGV+QR L ++A P Sbjct: 379 REAAYAAIEAHDVDIVIGTHALIQEPVAFAALGLVVTDEQHRFGVEQRAALEKRAHLTPD 438 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 +L+MTATPIPRT+ LT GD+D+S+I P GR P++T + R D + ++ + G Sbjct: 439 MLVMTATPIPRTMTLTVYGDLDVSRIEHLPPGRVPVETFVRTPARRDLIYRFVRQEIERG 498 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNG 540 ++AY +CP +EE + S E + L + ++HG++ +KE+VM F G Sbjct: 499 RQAYVVCPLVEESDTLDLPSAQEVYAELSAGVFREVRCGLVHGKLRGKEKEAVMADFHAG 558 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L+ TTVIEVG+DV +ASI++IENAE FGLAQLHQLRGRVGRG S CIL+ Sbjct: 559 KLDVLVTTTVIEVGVDVPNASIMVIENAERFGLAQLHQLRGRVGRGAHRSYCILV-SAAR 617 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + + RL++L++ DGF++AEEDLK R G+ G Q G+P +A +L AR Sbjct: 618 TAAAKKRLALLESVRDGFVLAEEDLKLRGPGQFFGAMQHGLPDLKMADALRDVDILLKAR 677 Query: 661 KDA 663 + A Sbjct: 678 RAA 680 >gi|297156905|gb|ADI06617.1| ATP-dependent DNA helicase RecG [Streptomyces bingchenggensis BCW-1] Length = 743 Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 217/662 (32%), Positives = 342/662 (51%), Gaps = 75/662 (11%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGE 100 DLL ++P + +R ++S++ + VT+ ++ F ++ ++ L DG+G Sbjct: 34 DLLHHYPRRYAERGELTRLSDLPLDEHVTVVAQVADARVHKFDRGTKQRLEVTLTDGSGR 93 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF------- 153 + L+FF R + GR+ GK+ +N + HP Y D Sbjct: 94 LQLVFFGRGVYTAQKELLPGRRGMFAGKVGVFRNVRQLAHPAYEMLGKDDGAAAVEAWAN 153 Query: 154 ---PLIEAVYSLPT-------GLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203 PL A L + G +D + + L + LPE L + + Sbjct: 154 QLRPLYPACAQLESWKIEKAVGTLLDSLEATGWDGL--VDALPE----SLRLGRGLAELP 207 Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIA 262 EA IH PR D + AR+RL +DE Q+AL R + +P EG + Sbjct: 208 EALLKIHRPRTKTDI---AVARDRLKWDEAFVLQVALARRRHADAQLPAVPRAPAEGGLL 264 Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 +PF+ T+ Q+S ++I D++ + M R+LQG+VGSGKT+VAL AM V++GG Sbjct: 265 DAFDARLPFTLTEGQQSVSREIFADLATDHPMHRLLQGEVGSGKTMVALRAMLGVVDSGG 324 Query: 323 QAVIMAPIGILAQQHYEFIKKYT-------------QNTQIIVEIITGNMPQAHRRKALE 369 QA ++AP +LAQQH+ I + Q T+++ ++TG+M A RR+AL Sbjct: 325 QAAMLAPTEVLAQQHHRSITEMMGDLAEGGMLGGSEQGTKVV--LLTGSMGAAARRQALL 382 Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTA 428 + G+A I++GTHAL +D +Q++ L LV+VDEQHRFGV+QR L K PH+L+MTA Sbjct: 383 DLVTGEAGIVVGTHALIEDKVQFHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVMTA 442 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKK 484 TPIPRT+ +T GD++ S + + PAGR PI + ++P + ER++ ++ G + Sbjct: 443 TPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAKDKPHFLARAWERVREEVAAGHQ 502 Query: 485 AYWICPQIEEKKESNFRSVVERFN--------------------SLHEHFTSS------I 518 AY +CP+I + +E + + + E + Sbjct: 503 AYVVCPRIGDDEEDEPKGAARKSAKPPVKSPEDEAEKRPPLAVLDVAEQLAKGPLRELRV 562 Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578 +++GRM K+ VM F G +L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQ Sbjct: 563 EVLYGRMQPEAKDEVMRRFAAGEVDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQ 622 Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638 LRGRVGRG C+L+ P + RL + T DGF ++ DL+QR+EG++LG Q Sbjct: 623 LRGRVGRGSAAGLCLLVSEMPEGSPARARLGAVAATLDGFELSRIDLEQRREGDVLGQAQ 682 Query: 639 SG 640 SG Sbjct: 683 SG 684 >gi|256851309|ref|ZP_05556698.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 27-2-CHN] gi|260660733|ref|ZP_05861648.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 115-3-CHN] gi|282933246|ref|ZP_06338633.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 208-1] gi|297206179|ref|ZP_06923574.1| DNA helicase RecG [Lactobacillus jensenii JV-V16] gi|256616371|gb|EEU21559.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 27-2-CHN] gi|260548455|gb|EEX24430.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 115-3-CHN] gi|281302750|gb|EFA94965.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 208-1] gi|297149305|gb|EFH29603.1| DNA helicase RecG [Lactobacillus jensenii JV-V16] Length = 674 Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 224/677 (33%), Positives = 380/677 (56%), Gaps = 31/677 (4%) Query: 5 FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64 LN LF P++ +GVG K + L + + DLLFY P + D P + ++ Sbjct: 1 MLNNLFEPVTRLKGVGPKTAAALESL------SIYSIYDLLFYFPYRYDDLEMIP-LDQL 53 Query: 65 SEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 ++ + V + G I+ S F +K R +K+ ++ +I ++ F+ + LK+ G Sbjct: 54 NDGQKVLLKGIIATEPFVSRFGYKKSRLSFKLRIDH---DIIMVNFFNQP-WLKSQLEVG 109 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 +++ V GK K + ++ S+ + + VY + + ++I AL+ Sbjct: 110 KEVAVYGKYNLAKQSLSGFK--FVAAKSEKSS---LSPVYPVNRHIKQKKLIELIKLALA 164 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTSPARERLAYDELLAGQ 237 + L + + +++ QK + E +H P+ +AK + ++ RE + Q Sbjct: 165 QKQELMDIVPEEIRQKYRLMNDQELVEKMHEPKSPNEAKLAKRSAIFREFFIFQV----Q 220 Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 +ALL MR Q + +G + +K+ +PF + Q+ I ++ D+ QK +M R+ Sbjct: 221 LALLTMRPQGR--LGTAKKYDLNEIKKLTNTLPFELSADQKKVINELFADLHQKRQMRRL 278 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 LQGDVGSGKT+VA+ + AA+ AG QA +M P ILA QH+ I + + + + ++T Sbjct: 279 LQGDVGSGKTVVAVFGIYAAITAGYQAALMVPTEILANQHFGKIDELLRPFGVRIALLTS 338 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 + +R+ +A G +++IGTHAL Q +++ KL LVI+DEQHRFGV QR KL K Sbjct: 339 STKTMEKREIYRELADGTLNVVIGTHALIQPGLKFKKLGLVIIDEQHRFGVNQRQKLMIK 398 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 P +L MTATPIPRTL LT+ G++D+S+I PAGRKPI + I + +D+V+ ++K Sbjct: 399 GENPDLLAMTATPIPRTLALTAYGEMDVSEIRHLPAGRKPIVSAWITSSHLDQVLAKMKE 458 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDS 536 LS+G + Y + P IEE + + ++ E L +F + ++HG+M+ +K+ +M Sbjct: 459 QLSQGFQIYVVTPLIEESENIDLKNAKELCLKLQSYFNHEKVVLLHGQMNGEEKDQIMTE 518 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F G +L+AT+VIEVG+DV +A++++I +A+ FGL+QLHQLRGR+GRG+ S C + Sbjct: 519 FSQGDINILVATSVIEVGVDVPNANMMVIFDADRFGLSQLHQLRGRIGRGKTESFCYFVA 578 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 P + R+ ++ +T +GF ++EEDLK R +G++ G QSG+P+F + + + Sbjct: 579 DPK-TDIGKKRMEIISSTSNGFKLSEEDLKLRGQGDLFGKAQSGIPEFRLGDLVNDYNTM 637 Query: 657 EIARKDAKHILTQDPDL 673 +A+ A+ ++ DPDL Sbjct: 638 VVAQNVARQLVKTDPDL 654 >gi|25027994|ref|NP_738048.1| putative ATP-dependent DNA helicase recG [Corynebacterium efficiens YS-314] gi|259506386|ref|ZP_05749288.1| ATP-dependent DNA helicase [Corynebacterium efficiens YS-314] gi|23493277|dbj|BAC18248.1| putative ATP-dependent DNA helicase recG [Corynebacterium efficiens YS-314] gi|259166027|gb|EEW50581.1| ATP-dependent DNA helicase [Corynebacterium efficiens YS-314] Length = 707 Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 223/665 (33%), Positives = 353/665 (53%), Gaps = 59/665 (8%) Query: 46 FYHPSSFIDRHYRPKISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLL 104 + H S +D + E +VT+ G + + S+ + YKI++ + ++T+ Sbjct: 42 YSHHGSGVD------LGAAEEGDLVTVVGEVVHAAKSYTRTGKLLYKIIVAGESEQVTIS 95 Query: 105 FFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI-------------------- 144 FF + + +G + TGK+K + + + HP +I Sbjct: 96 FF--GAPYVPKLLPQGVRAMFTGKVKFFRRQPQLTHPEFIVIPDAGSGGKVTGTGGMKAL 153 Query: 145 --FHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 + + ++V L+E +YS ++ I L +P +PE + Sbjct: 154 AAYGDVEEVARSLVEREYLPIYSGTASMTTWRIMAAIQRVLETMPPVPEPLGD---TPPG 210 Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI-NV 257 PS +A IH+P E +RL Y+E L+ + L R P Sbjct: 211 MPSFEQALRGIHDP----GAEGPGAYVDRLKYNEALSLATVMALRRADTASRKAPPCPRA 266 Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317 G + ++ ++PF T+ Q++ ++I DM Q+ M R+LQG+VGSGKT+V+L+AM A Sbjct: 267 LGGQQRALIESLPFPLTEGQKTVTREISADMEQRTPMSRLLQGEVGSGKTIVSLLAMLQA 326 Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNT--QIIVEIITGNMPQAHRRKALERIAHGQ 375 +++G Q ++AP +LA QH + + Q V ++TG+M RR+AL + GQ Sbjct: 327 IDSGRQCAMLAPTEVLATQHARSLTTILGDAGVQASVVLLTGSMSTKVRREALLNVISGQ 386 Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTATPIP 432 A I++GTHA+ QD+++++ L LV+VDEQHRFGV+QR +L K PH+L+MTATPIP Sbjct: 387 ADIVVGTHAIIQDTVEFFDLGLVVVDEQHRFGVEQRDRLRTKGREGLTPHLLVMTATPIP 446 Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWIC 489 RT+ +T GD+ +S + E P GR+PI+T ++P + + ER+ +S G +AY +C Sbjct: 447 RTIAMTVFGDLAVSTLRELPGGRRPIQTSVVPAEKPAWMKRAWERIGEEVSAGHQAYVVC 506 Query: 490 PQIEEKKESNFRSVVERFNSL-HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 P+IE VV+ ++L H F ++ ++HGRM K+ VM F G +L++ Sbjct: 507 PRIEGDG-----GVVKIHDTLQHRTFRDLTVGMLHGRMDPETKDQVMRDFATGGIDVLVS 561 Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607 TTVIEVGIDV +A++++I A+ FG++Q+HQLRGRVGRG S C+L L R Sbjct: 562 TTVIEVGIDVANATVMLILEADRFGVSQIHQLRGRVGRGGFASLCLLHTGFALDSPQMGR 621 Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHI 666 L + NT DGF ++E DLK R+EG+ILG QSG L L D ++E A DA + Sbjct: 622 LQAIANTSDGFALSELDLKVRQEGDILGTSQSGSDTKLQYLSLLTDQKIIERATADAAEL 681 Query: 667 LTQDP 671 + +DP Sbjct: 682 VARDP 686 >gi|330838664|ref|YP_004413244.1| ATP-dependent DNA helicase RecG [Selenomonas sputigena ATCC 35185] gi|329746428|gb|AEB99784.1| ATP-dependent DNA helicase RecG [Selenomonas sputigena ATCC 35185] Length = 685 Score = 354 bits (908), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 230/663 (34%), Positives = 355/663 (53%), Gaps = 27/663 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L +GVG K L+KI DLL Y+P ++ DR ++ I+ + Sbjct: 7 LLELKGVGAKKYEALNKI------GLFTVYDLLTYYPRTYEDRRVLTPLAAIAVGEQQAV 60 Query: 73 TGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 TG I + + + R IL ++DGTG + + FF +K LK G ++ GKI Sbjct: 61 TGVIRHIA--ERRTGRGIHILSVDIDDGTGFLQVTFFNQK--FLKGKLKAGMQLFAVGKI 116 Query: 130 K-----KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184 + K ++ V + + ++ VY+ L+ F+ ++ + Sbjct: 117 DYAFGGRGKKQMSQVKDFSLMEKGGEAALGIL-PVYAASGSLNQKFFRTLLTGVFQGIGK 175 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 + E + + + Q+ + EA+ +H P E ARERL ++EL Q LLL+R Sbjct: 176 IVETLPESICQRYRLVAREEAYREVHFPESP---EALHLARERLIFEELYLIQCGLLLLR 232 Query: 245 KQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 ++ + K G+ ++++ +PF T+ QE A +DI QDM M R++QGDV Sbjct: 233 RESREKRKGVRHLGASRLSRGAREALPFRLTEDQEKAWRDIRQDMELALPMRRLVQGDVS 292 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT +AL+A+ VE G Q MAP ILA+QH++ + ++ + + ++TG + + Sbjct: 293 SGKTALALLALVKTVENGFQGAFMAPTEILARQHFDKFSELLRDLPVRLLLLTGRLSKKE 352 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPH 422 R A I I+IGTHAL Q+ + + L LV+ DEQHRFGV+QR L ++A P Sbjct: 353 REAAYAAIEAHDVDIVIGTHALIQEPVAFAALGLVVTDEQHRFGVEQRAALEKRAHLTPD 412 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 +L+MTATPIPRT+ LT GD+D+S+I P GR P++T + R D + ++ + G Sbjct: 413 MLVMTATPIPRTMTLTVYGDLDVSRIEHLPPGRVPVETFVRTPARRDLIYRFVRQEIERG 472 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNG 540 ++AY +CP +EE + S E + L + ++HG++ +KE+VM F G Sbjct: 473 RQAYVVCPLVEESDTLDLPSAQEVYAELSAGVFREVRCGLVHGKLRGKEKEAVMADFHAG 532 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L+ TTVIEVG+DV +ASI++IENAE FGLAQLHQLRGRVGRG S CIL+ Sbjct: 533 KLDVLVTTTVIEVGVDVPNASIMVIENAERFGLAQLHQLRGRVGRGAHRSYCILV-SAAR 591 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + + RL++L++ DGF++AEEDLK R G+ G Q G+P +A +L AR Sbjct: 592 TAAAKKRLALLESVRDGFVLAEEDLKLRGPGQFFGAMQHGLPDLKMADALRDVDILLKAR 651 Query: 661 KDA 663 + A Sbjct: 652 RAA 654 >gi|229829117|ref|ZP_04455186.1| hypothetical protein GCWU000342_01202 [Shuttleworthia satelles DSM 14600] gi|229792280|gb|EEP28394.1| hypothetical protein GCWU000342_01202 [Shuttleworthia satelles DSM 14600] Length = 683 Score = 354 bits (908), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 236/684 (34%), Positives = 365/684 (53%), Gaps = 29/684 (4%) Query: 13 LSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70 L +G+G+K K I G DLL ++P S+ P +S + + Sbjct: 7 LRDLKGIGEKTEKLYQKLDIYTVG--------DLLLHYPRSY---QVYPPLSNYGDLKPG 55 Query: 71 TITGYISQ-HSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 +++ S +++K R + L G+ +L + + +++ G GK Sbjct: 56 ASVALLARLKSPAKVRKGRRMDVTLATAFFGDRSLDLVWFRMPYIRSQLAVGEAYVFYGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188 ++ R+ + + + VYSL GL+ + KK + L E+ Sbjct: 116 LEAEGERLKISQAQIYSPDEYSALMQQPQPVYSLTGGLTNNNVKKAVQTVFDSGIRLGEY 175 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR-KQF 247 + +++L+ S A IH P DF+ AR+RL YDE + L R + Sbjct: 176 LPQEILEGNQLASYEWALKQIHFP---IDFDHLLRARKRLVYDEFFFFLLELGRNRLDEA 232 Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 +E PI ++ + + +PF T Q+ A+ DIL D+S R++QGDVGSGKT Sbjct: 233 PEENRHPITETAQM-EDVKERLPFDLTPGQKKALADILGDLSAPLVSQRLIQGDVGSGKT 291 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQH-YEFIK---KYTQNTQIIVEIITGNMPQAH 363 +VA +AM A +E G QAVIMAP +LA+QH EFI+ +Y ++ +TG Sbjct: 292 IVAFLAMLACLENGFQAVIMAPTEVLARQHEKEFIRLCQEYALPYSVVC--LTGASTAKE 349 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 +R+ RI+ A I+GTHAL Q+++++ L LV+ DEQHRFGV+QR L K +P+V Sbjct: 350 KREIQSRISEEDALFIVGTHALIQETVEFRDLALVVTDEQHRFGVRQRKILASKGQSPNV 409 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+M+ATPIPRTL + GD+++S I E P+GR+ IK II ++ + + + G+ Sbjct: 410 LVMSATPIPRTLAMILYGDMNLSVIRELPSGRRKIKNAIIRSDKKKSAWQFVAREVLAGR 469 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541 +AY ICP IE S +V++ +L + + ++ ++HGRM DK+ VM+ F +G Sbjct: 470 QAYVICPLIEASDVSEDENVMDYAQALKDFYGDQITVGLLHGRMKSKDKDKVMEDFASGK 529 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L++TTV+EVG++V +AS+++IENA FGLAQLHQLRGRVGRG + + CI + S Sbjct: 530 IQVLVSTTVVEVGVNVPNASVMLIENANRFGLAQLHQLRGRVGRGADQAYCIFIDSSD-S 588 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 + RL +L ++ DGF IA EDLK R G+ GI+QSG F IA +L++A + Sbjct: 589 EEISRRLEILVHSNDGFAIASEDLKLRGPGDFFGIRQSGDLDFKIADIYQDADVLQMASE 648 Query: 662 DAKHILTQDPDLTSVRGQSIRILL 685 D+K IL DP L IR L Sbjct: 649 DSKEILEADPRLVFEEHAGIRSFL 672 >gi|254373789|ref|ZP_04989272.1| ATP-dependent DNA helicase RecG [Francisella novicida GA99-3548] gi|151571510|gb|EDN37164.1| ATP-dependent DNA helicase RecG [Francisella novicida GA99-3548] Length = 679 Score = 354 bits (908), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 224/638 (35%), Positives = 360/638 (56%), Gaps = 20/638 (3%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75 F GVG+ L+K N + N DLL P + D + I+ + + I G Sbjct: 6 FNGVGEATIKALAKC-NIHDPN-----DLLTIFPKDYKDTRFITPINHLVAGKRSLIQGR 59 Query: 76 ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 ++ + +++ ++ + +ND TG +++ F L + + GK++ Sbjct: 60 VT-NLTYKKFGKKFLRFNINDNTGFCSVILFKFYPNQLA-ILERSEYVRCYGKVE-FSLS 116 Query: 136 IIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLL 194 MVHP + N+ + AVY L + L K+I++ L V I LL Sbjct: 117 PQMVHPEWATVNNGECALKQGFSAVYRLKK-IPDRLISKMILKMLQDNRV-ENIIPSQLL 174 Query: 195 QKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 ++ + S +A +H D ++ S AR + ++E+LA ++A + K K Sbjct: 175 RRFNLISFCDALYYVHALTNFIDEKYLSIARFSIKFEEMLAYKLAEQNIYKNTVKAQAPQ 234 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 I + + +P+ T +Q+ AI +IL D+ + N M R+LQGDVG+GKT+VA IA Sbjct: 235 IFLTKIQQNEFYEKLPYQLTNAQQRAITEILDDIKKSNAMNRLLQGDVGAGKTIVATIAA 294 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 AAV++G Q +MAP ILA+QH+ F+ +Y + I V + G + R++L++I Sbjct: 295 YAAVKSGYQVAMMAPTEILAEQHFSFLSQYLASFDIKVIPLLGKLSAKQTRESLDKIKDQ 354 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------PHVLLMTA 428 + +++GTHA+FQ+ ++Y L LVIVDEQHRFGV+QRL L K+++ PH L+++A Sbjct: 355 KDCVVVGTHAIFQERVEYCNLGLVIVDEQHRFGVEQRLALVSKSSSNFSDLTPHQLIISA 414 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488 TPIPRTL +T G++ +S + E P RKPI T ++ + +IE++K + G++ YW+ Sbjct: 415 TPIPRTLAMTLYGNLKLSILDELPPKRKPIITTVLNRAKKQNLIEKVKQAVLRGEQVYWV 474 Query: 489 CPQIEEKKESNF-RSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 CP +EE + +F + V + L E ++ +++G M DK M +FK +L+ Sbjct: 475 CPLVEESENMDFLQDVKTLYQELLEALGKENVGLVYGSMKSKDKIEQMAAFKAKKYAVLV 534 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 ATTVIEVG+DV +A+I+II+NAE G++QLHQLRGRVGRG + S CILLY +S+ Sbjct: 535 ATTVIEVGVDVPNATIMIIDNAERLGISQLHQLRGRVGRGAKESYCILLYSDKISEVGKR 594 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644 RLS+++ ++DGF +AE+DL+ R G+ILG +QSG+ F Sbjct: 595 RLSLVRESQDGFYLAEKDLEIRGAGDILGKEQSGVSTF 632 >gi|86141562|ref|ZP_01060108.1| ATP-dependent DNA helicase recG [Leeuwenhoekiella blandensis MED217] gi|85832121|gb|EAQ50576.1| ATP-dependent DNA helicase recG [Leeuwenhoekiella blandensis MED217] Length = 700 Score = 354 bits (908), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 249/708 (35%), Positives = 382/708 (53%), Gaps = 63/708 (8%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L P+ +GVG + L + + DLL P+ +ID+ IS++ Sbjct: 5 LQTPIDYLKGVGPNRANLLRSELGIHT-----YQDLLNLFPNRYIDKTQYYTISQLQPTS 59 Query: 69 I-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT- 126 V I G ++ + + + D TG + L++F + LK + E KI V Sbjct: 60 ADVQIIGKVTHIKTAGEGRSKRLVATFIDQTGAMELVWF----KGLKWIR-ESLKINVPY 114 Query: 127 ---GKIKKLKNRIIMVHPHYIFHNSQDVN--------FPLIEAVYS------LPTGLSVD 169 GK+++ + + HP +P E + + + GL Sbjct: 115 VAFGKVQRFGSSYSIAHPDLELLEEHKKGLRIAMQPVYPSTEKLSNRGITNRVMNGLMQT 174 Query: 170 LFKKI---IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE 226 LF+++ I E+LS E I L K P EA+ IH P++ E + A+ Sbjct: 175 LFQEVHKSIEESLS------ESIRNAL---KLIPR-REAYLNIHFPQQQ---ETLAKAQF 221 Query: 227 RLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILR-NIPFSPTKSQESAIKDI 284 RL ++EL Q+ LL+ + K++I G G ++PF T +Q+ +K+I Sbjct: 222 RLKFEELFFIQLQLLVKNQLHKQKIKGYAFEAIGDYFTTFYNEHLPFELTGAQKRVVKEI 281 Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344 D+ + +M R+LQGDVGSGKT+VAL+ M A++ QA +MAP ILA QH++ I + Sbjct: 282 RNDLGKPAQMNRLLQGDVGSGKTIVALMTMLIALDNNFQACLMAPTEILAIQHFQGISEL 341 Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404 + + + ++TG+ RR+ + + G HI+IGTHAL +D +++ L L ++DEQH Sbjct: 342 CEKLDLKIALLTGSSKTKERREIHQSLEDGSLHILIGTHALLEDKVKFKNLGLAVIDEQH 401 Query: 405 RFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463 RFGV QR KL K PH+L+MTATPIPRTL ++ GD+D+S I E P GRK IKTV Sbjct: 402 RFGVAQRSKLWHKNELPPHILIMTATPIPRTLAMSVYGDLDVSVIDELPPGRKAIKTV-- 459 Query: 464 PINRIDEVIERLKVV------LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--- 514 +R D RLKV + +G++ Y + P I+E + +++ +++ + S+ F Sbjct: 460 --HRYDN--NRLKVFGFIRDEIKKGRQIYVVYPLIQESEALDYKDLMDGYESIAREFPMP 515 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 I+I+HG+M DK+ M+ F NG ++++ATTVIEVG++V +AS++IIE+AE FGL+ Sbjct: 516 DYQISIVHGQMKPADKDYEMNRFVNGETQIMVATTVIEVGVNVPNASVMIIESAERFGLS 575 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG + S CIL+ LS++S TRL + T DGF IAE DLK R G+I+ Sbjct: 576 QLHQLRGRVGRGADQSYCILMTGHKLSEDSKTRLQTMTQTNDGFEIAEVDLKLRGPGDIM 635 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682 G +QSG+ IA + +++IAR A +L +DP L +R Sbjct: 636 GTQQSGVLNLKIADIVKDNEVMKIARNYASALLKEDPQLAQPENLPVR 683 >gi|237738008|ref|ZP_04568489.1| ATP-dependent DNA helicase recG [Fusobacterium mortiferum ATCC 9817] gi|229419888|gb|EEO34935.1| ATP-dependent DNA helicase recG [Fusobacterium mortiferum ATCC 9817] Length = 684 Score = 354 bits (908), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 220/607 (36%), Positives = 360/607 (59%), Gaps = 16/607 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEI-SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101 D+L+Y P ++ DR KI E+ EE +V ++ + + K DG+G I Sbjct: 36 DMLYYFPRAYDDRTNIKKIGELRGEEYVVLKATLMTVTAPPTRSGLKMVKATATDGSGII 95 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII-MVHPHY-IFHNSQDVNFPLIEAV 159 L++F + L+ G + G++K+ I +V+P + + N + ++ I + Sbjct: 96 ELVWF--QMPYLRKTLKIGEEYIFIGQVKR--GYIFQIVNPEFKLSSNQKRLDEGEILPI 151 Query: 160 YSLPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 YS L + +K++ + L + L V+ E I +++++K EA IH P+ +K+ Sbjct: 152 YSSSKELPQNSLRKLMEKMLNTTLAVIEENIPEEIIKKYKLMGRKEALREIHFPKNSKNL 211 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK--IAQKILRNIPFSPTKS 276 E A+ R A +ELL ++ +L R + + ++E K + + L ++PF T + Sbjct: 212 E---EAKRRFAVEELLVLEMGILQKRFEVDNQNIERYHLEDKKTLVKAYLSSLPFELTNA 268 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q+ I +I +D++ + R++QGDVGSGKT V+++ + +E Q V+MAP ILA Q Sbjct: 269 QKRVITEIYKDLANGRVVNRLVQGDVGSGKTAVSMVLLLYMLENSYQGVLMAPTEILAVQ 328 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 HY +K + + VE++TG+ +++ LE IA+G I+IGTHAL ++S+ +++L Sbjct: 329 HYLSVKDKFEKLGVRVELLTGSFTGKKKQRLLEDIANGDVGIVIGTHALIEESVVFHRLG 388 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 ++I+DEQHRFGV QR L K ++++M+ATPIPR+L L+ GD+D+S I E P GRK Sbjct: 389 MIIIDEQHRFGVLQRKALRDKGVLANLVVMSATPIPRSLALSIYGDLDVSVIDELPPGRK 448 Query: 457 PIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 PI+T I + I+ + + + LS+G++AY+I P IEE ++ + +S E + + Sbjct: 449 PIRTKWIATDEEIETMYDFIDKKLSQGRQAYFIAPLIEESEKLSAKSTAELMEEVEKFLP 508 Query: 516 S-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + I ++HG+M + +K+ +M FKN +L++TTVIEVG+DV ++SII+I NAE FGL+ Sbjct: 509 NYKIGVLHGKMKNSEKDEIMSRFKNKELDILVSTTVIEVGVDVPNSSIIVINNAERFGLS 568 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 LHQLRGRVGRG+ S C L+ + S RL V++ T+DGF IAEEDL+ RK GEI Sbjct: 569 ALHQLRGRVGRGQYQSYCFLVSKTD-NATSKARLQVMEETQDGFKIAEEDLRLRKSGEIF 627 Query: 635 GIKQSGM 641 G +QSG+ Sbjct: 628 GTRQSGL 634 >gi|332525200|ref|ZP_08401375.1| ATP-dependent DNA helicase RecG [Rubrivivax benzoatilyticus JA2] gi|332108484|gb|EGJ09708.1| ATP-dependent DNA helicase RecG [Rubrivivax benzoatilyticus JA2] Length = 679 Score = 353 bits (907), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 233/646 (36%), Positives = 353/646 (54%), Gaps = 24/646 (3%) Query: 40 RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99 R IDL + P + D ++ + + + G + + +++ RR + L D +G Sbjct: 24 RDIDLALHLPMRYEDETRIEPVAALHDGDTAQVEGVV-RSCQVEIRSRRQLVVRLADDSG 82 Query: 100 EITLLF--FYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-- 155 E+TL F FY T+ K + R R MVHP D + PL Sbjct: 83 ELTLRFLHFYPSTQ--KQLAVGSRVRVRGEVRVGFLGRE-MVHPTV---KRVDEHTPLAA 136 Query: 156 -IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 + VY L +K + LSR P+ + + + P + EA ++H+P Sbjct: 137 SLTPVYPASAQLPQAYLRKAVAAGLSRAPL--DEVLPPGVVPPGLPPLREALRLLHHPPP 194 Query: 215 AKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270 + + PA +RL +DELLA Q++ L R + + + P + + ++ +P Sbjct: 195 GIAMGALEDHSHPAWQRLKFDELLAQQLSQLQARLE-RSRLAAPALRDSTLPARLRTVLP 253 Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F+ T +QE + +I D++ M R+LQGDVGSGKT+VA +A A A+ +G Q +MAP Sbjct: 254 FTLTAAQERVVAEIAADLALAQPMHRLLQGDVGSGKTVVAALAAATAIGSGWQCALMAPT 313 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 ILA+QH++ + + + V +TG+ R L +IA GQA +++GTHA+ Q+ + Sbjct: 314 EILAEQHFKKLVDWLLPLGLEVAWLTGSRKGKQRAAMLAKIASGQAALVVGTHAVIQEDV 373 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQK----ATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 + +L L +VDEQHRFGV QRL L +K A PH+L+M+ATPIPRTL +T D+ +S Sbjct: 374 VFARLGLAVVDEQHRFGVAQRLALRRKLELQALEPHLLMMSATPIPRTLAMTYFADLAVS 433 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 I E P GR P+ T + ++ + V+E+++ ++ G++ YW+CP +EE + + ++ Sbjct: 434 TIDELPPGRTPVVTKVFADDKREMVVEKIRDEVARGRQVYWVCPLVEESEHIDLQNATAT 493 Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 L E S+ ++HGRM+ DK + M F G +LL+ATTVIEVG+DV +AS+++I Sbjct: 494 HAQLSEALPGVSVGLLHGRMAAADKAATMAEFSAGRMQLLVATTVIEVGVDVPNASLMVI 553 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625 E+AE FGLAQLHQLRGRVGRG S C+LLY PLS RL + T DGF IA DL Sbjct: 554 EHAERFGLAQLHQLRGRVGRGAVASVCVLLYTAPLSPTGKARLRAMAETTDGFEIARRDL 613 Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671 R GE +G +QSG A D+LLE AR+ A +L + P Sbjct: 614 DIRGPGEFMGSRQSGDALLRFADLAEDDALLERARELAPKLLREQP 659 >gi|227832989|ref|YP_002834696.1| ATP-dependent DNA helicase [Corynebacterium aurimucosum ATCC 700975] gi|262182523|ref|ZP_06041944.1| ATP-dependent DNA helicase [Corynebacterium aurimucosum ATCC 700975] gi|227454005|gb|ACP32758.1| ATP-dependent DNA helicase [Corynebacterium aurimucosum ATCC 700975] Length = 698 Score = 353 bits (907), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 232/665 (34%), Positives = 361/665 (54%), Gaps = 52/665 (7%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 +LL ++P +I + + + VTITG I K + + ++ G + Sbjct: 33 ELLSHYPRDYIRHNKDVGLGGAEDGDHVTITGVIEDLRVKHTSKAMVFILYMDSG---VQ 89 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162 FF ++ V G ++ ++GK+K + + HP ++ + L+++ Sbjct: 90 ASFF--NAHYVQRVLGRGMRVMLSGKLKYFRGYPSLQHPDFLILDPGRYQESLLDSTTGQ 147 Query: 163 PTGLSVDLFKKIIVEA-LSR--LPVLP------EW-----IEKDLLQKKSFP-------- 200 TG L + +E L R +PV P W I K L P Sbjct: 148 GTGSLKKLSQFGSLETFLQREWIPVYPASGKVTSWYIMGAIHKVLEHTPPIPEPLDYRMM 207 Query: 201 -SIAEAFNIIHNPRKAKDFEWTSPAR--ERLAYDELLAGQIALLLMRKQFKKEIGIPIN- 256 ++ +A IH P P R +RL Y+E L+ + + L ++ K P+ Sbjct: 208 VTLDQAVREIHEPGD------NGPERAIQRLKYNEALSVGLVMALRQRDVKARTATPMPA 261 Query: 257 -VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315 +EG ++L +PF+ T Q I +I D+ M+R+LQG+VGSGKTLVA AM Sbjct: 262 ILEG-YRDELLSGLPFALTDGQRRVIGEIDADLCGTAPMMRLLQGEVGSGKTLVATCAML 320 Query: 316 AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375 AV+AG QA ++AP +LA QH I + + V ++TG+M A +RKAL I G+ Sbjct: 321 QAVDAGKQAALLAPTEVLAAQHGASISASVPDG-VTVTVLTGSMKTAEKRKALLEIVSGE 379 Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL---TQKATAPHVLLMTATPIP 432 A I+IGTHA+ QDS++++ L LVIVDEQHRFGV+QR L T++ T+PH+L+MTATPIP Sbjct: 380 ADIVIGTHAIIQDSVEFFDLGLVIVDEQHRFGVEQRDSLRTKTREGTSPHLLVMTATPIP 439 Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWIC 489 RT+ +T GD+ +S + E P GRKPI + ++P + + IER++ + +G +AY +C Sbjct: 440 RTIAMTVFGDLAVSTLKELPGGRKPILSAVVPEWKPEWVRRAIERIREEVDKGHQAYIVC 499 Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549 P+IE + S+ R L + ++HG+M DK+ VM+SF G +L+ATT Sbjct: 500 PRIEGEGGVETMSLQLRNLPLR---GLRVEMLHGKMP--DKDQVMESFARGEIDVLVATT 554 Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609 VIEVG+DV +A++++I +E+FG++QLHQLRGRVGRG S C+L S+ R+ Sbjct: 555 VIEVGVDVPNATVMLIRESENFGVSQLHQLRGRVGRGGNESVCLLHTTAEPDSKSFRRIK 614 Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILT 668 + +T GF +AE DL+QR EG+ILG QSG + L ++D ++E DA ++ Sbjct: 615 AIADTPSGFDLAELDLQQRHEGDILGTLQSGTKRTLKLLDLINDRDIVERTHSDAAALVE 674 Query: 669 QDPDL 673 ++P+L Sbjct: 675 RNPEL 679 >gi|320008320|gb|ADW03170.1| ATP-dependent DNA helicase RecG [Streptomyces flavogriseus ATCC 33331] Length = 753 Score = 353 bits (907), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 227/708 (32%), Positives = 365/708 (51%), Gaps = 90/708 (12%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGE 100 DLL ++P + +R ++E+ + VT+ ++ F + + ++ L DG+G Sbjct: 34 DLLHHYPRRYEERGRLTALTELPLDEHVTVVAQVADARIMMFNNGRGKRLEVTLTDGSGR 93 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-------- 152 + L+FF GR+ GK+ ++ + HP Y +++D + Sbjct: 94 LQLVFFGHGVHKPHKELLPGRRAMFAGKVSVFNRKMQLAHPTYQLLDARDDDAGDVTEAV 153 Query: 153 ----------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSI 202 +P + + S +VD EA+ LP L + + F + Sbjct: 154 DAFAGQLLPIYPACKQLDSWRIAKAVDTVLPSAQEAVDPLP-------PALREGRGFVPL 206 Query: 203 AEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI----NVE 258 EA IH P+ D + AR+RL +DE Q+AL R+++ + +P +V Sbjct: 207 PEALLRIHRPQTKADI---AAARDRLRWDEAFVLQVAL--ARRRYA-DTQLPAKARRSVP 260 Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318 G + +PF+ T+ Q+ +I ++ ++ M R+LQG+VGSGKTLVAL AM V Sbjct: 261 GGLLDAFDATLPFTLTEGQQKVTGEIFDALATEHPMHRLLQGEVGSGKTLVALRAMLRVV 320 Query: 319 EAGGQAVIMAPIGILAQQHY--------EFIKKYT---------------------QNTQ 349 +AGGQA ++AP +LAQQH+ E +K+ Sbjct: 321 DAGGQAAMLAPTEVLAQQHHRSVTEMMGELAEKWGLWRDAPPQEGGGGRPEGMPGGSGLG 380 Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409 V ++TG+M A RR+AL + G+A I+IGTHAL +D +Q++ L LV+VDEQHRFGV+ Sbjct: 381 TKVVLLTGSMGVAARRRALLDLVTGEAGIVIGTHALIEDKVQFHDLGLVVVDEQHRFGVE 440 Query: 410 QRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467 QR L K PH+L+MTATPIPRT+ +T GD++ S + + PAGR PI + ++P Sbjct: 441 QRDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAKDK 500 Query: 468 ---IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR----------------SVVERFN 508 + ER++ + G +AY +CP+I ++ E R +V+E Sbjct: 501 PHFLSRAWERVREEVESGHQAYVVCPRIGDEDEPAGRKTKKAAEEDGDKRPPLAVLEIAE 560 Query: 509 SLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 L + + + ++HGRM DK+ VM F G +L+ATTVIEVG++V +A++++I Sbjct: 561 QLAKGPLAGLRVEVLHGRMPADDKDDVMRRFAAGQADVLVATTVIEVGVNVPNATVMVIM 620 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626 +A+ FG++QLHQLRGRVGRG C+L+ + + RLS + T DGF ++ DL+ Sbjct: 621 DADRFGVSQLHQLRGRVGRGSAPGLCLLVSEAHEASPARARLSAVAATLDGFELSRIDLE 680 Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDL 673 QR+EG++LG QSG+ L + D ++ AR++A ++ DP L Sbjct: 681 QRREGDVLGQAQSGVRSSLRVLSVIDDEEVIAAAREEAVRVVADDPGL 728 >gi|42519402|ref|NP_965332.1| ATP-dependent DNA helicase RecG [Lactobacillus johnsonii NCC 533] gi|41583690|gb|AAS09298.1| ATP-dependent DNA helicase RecG [Lactobacillus johnsonii NCC 533] Length = 679 Score = 353 bits (907), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 222/675 (32%), Positives = 372/675 (55%), Gaps = 30/675 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67 LF P++ +GVG K + L+ + IN DLLFY P + D P + +I + Sbjct: 8 LFEPVTELKGVGAKTATALASLGINT-------IYDLLFYFPFRYDDLETIP-LDQIEDG 59 Query: 68 RIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123 + V + G + S F +K R +KI ++ +I ++ F+ + LK+ G+++ Sbjct: 60 QKVLLKGMVVTDPFVSRFGYRKTRLSFKIKIDH---DIIMVNFFNQP-WLKDKVESGKEV 115 Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-L 182 V GK + + + +D F +YS+ L + +K+I AL + Sbjct: 116 AVYGKYQVARQSF---SGFKLVAEKKDSGFA---PIYSVNRHLKQNKLQKLIDLALQEAI 169 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 + E I + +K S +H+P+ + AR + E Q+ L Sbjct: 170 NEVGETIPASIREKYRLLSDRVLVEKMHHPKNGNE---AKIARRSAIFREFFLFQMQLAQ 226 Query: 243 MRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 + Q ++ G+ + ++++ IPF + Q+ + +I D+ K +M R+LQGD Sbjct: 227 LLSQRNEDAPGVEKKYDLAAVKELIEEIPFELSDDQKKVVNEIFADLHSKRQMRRLLQGD 286 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VA+ A+ AAV AG QA +M P ILAQQH+ I + + + V ++TG+ Sbjct: 287 VGSGKTVVAVFAIYAAVTAGYQAALMVPTEILAQQHFAKIDELLKPLGVRVALLTGDTKD 346 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 +++ +A G +++IGTHAL Q + + L LVI+DEQHRFGV QR L +K AP Sbjct: 347 LEKKEIYRELADGTINVVIGTHALIQKEVHFKNLGLVIIDEQHRFGVNQRNTLIKKGDAP 406 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 +L MTATPIPRTL LT GD+ +S+I P GRKP+ + +++ EV++ ++ L + Sbjct: 407 DILAMTATPIPRTLALTVYGDMAVSEIRHLPKGRKPVVSSWATSSKLREVLDLMRSQLDK 466 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540 G + Y + P I E ++S+ ++ + + +F ++ ++HG+M K +MDSF G Sbjct: 467 GFQIYVVTPLISESEKSDLKNAEDLQAKIAHYFKDENVVLLHGQMKGDQKNEIMDSFAAG 526 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+ S C+ + P Sbjct: 527 KINILVTTSVIEVGVDVPNANMMVIFNADRFGLSQLHQLRGRIGRGQTQSFCVFVSDPK- 585 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 ++ R++++ +T +GF +AEEDLK R EG++ G QSG+P+F + + L A+ Sbjct: 586 TEIGKKRMNIITSTSNGFKLAEEDLKLRGEGDVFGKAQSGLPQFQVGDVVNDYNALVTAQ 645 Query: 661 KDAKHILTQDPDLTS 675 K+A++++ DP L + Sbjct: 646 KEARNLIKSDPALVN 660 >gi|237734862|ref|ZP_04565343.1| ATP-dependent DNA helicase [Mollicutes bacterium D7] gi|229382190|gb|EEO32281.1| ATP-dependent DNA helicase [Coprobacillus sp. D7] Length = 672 Score = 353 bits (906), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 193/515 (37%), Positives = 297/515 (57%), Gaps = 7/515 (1%) Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 I +YSL G++ F+ + +AL+ + + + +LL K A N+IH P Sbjct: 134 ITPIYSLKEGITQKSFQGYVKKALNFYHGHIQDEVPTNLLIKHHLIHKELALNLIHFPSN 193 Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274 D A L Y+E L Q+ + ++ K +GI + + + +PF T Sbjct: 194 NDD---VKEALRYLKYEEFLRFQLTMQYIKLSRKDNLGIKKQFNRQTLDEFIAQLPFELT 250 Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334 QE A +++ D+ ++ M R +QGDVGSGKT+V I + A AG Q +MAP ILA Sbjct: 251 FDQEQAALEVINDLQKETMMYRFVQGDVGSGKTVVGAIGLYANYLAGYQGAMMAPTEILA 310 Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394 QHY + K + I + ++TG++ +++ + +G I++GTHALFQ+ + Y K Sbjct: 311 TQHYRSLIKLFKKIDINIALLTGHLSNKEKQRIYNDLENGTIDIVVGTHALFQEKVIYQK 370 Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454 L LVI DEQHRFGV QR L +K ++M+ATPIPRTL ++ GD+D+S I P+G Sbjct: 371 LGLVITDEQHRFGVNQRKALKEKGKQVDFMVMSATPIPRTLAISIYGDMDVSTIKTMPSG 430 Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 RKP+ T + + + ++ RLK L+ G + Y +CP +EE + + R +N + +F Sbjct: 431 RKPVITEVFKTHSMKPILNRLKEYLASGGQCYVVCPLVEESEAIDSRDATGIYNGMKAYF 490 Query: 515 TS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 I ++HG+M D K+ +M +FK ++L++TTVIEVG+DV +A+ I+I NAE FG Sbjct: 491 KEQYQIGLLHGKMDDETKDQIMAAFKANEIQILVSTTVIEVGVDVSNANWIVIYNAERFG 550 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 L+Q+HQLRGRVGR ++ C LL + S+ + RL L+N DGF ++ DLK R G+ Sbjct: 551 LSQIHQLRGRVGRSDQQGYCFLLSNSS-SQEALERLEFLRNCHDGFEVSYYDLKLRGPGD 609 Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 ILG +QSG+P F + ++LEI+RKDA +L Sbjct: 610 ILGNQQSGLPVFSVGNIFEDANILEISRKDALELL 644 >gi|149277295|ref|ZP_01883437.1| ATP-dependent DNA helicase [Pedobacter sp. BAL39] gi|149232172|gb|EDM37549.1| ATP-dependent DNA helicase [Pedobacter sp. BAL39] Length = 701 Score = 353 bits (906), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 246/690 (35%), Positives = 367/690 (53%), Gaps = 36/690 (5%) Query: 5 FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64 F L + +GVG K + L K + + LL + P +IDR K+ E+ Sbjct: 2 FAASLDTTIEFLKGVGPKRAELLQKELGIYTYEQ-----LLNFFPFRYIDRTRFYKVKEL 56 Query: 65 SEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123 + + V I G I+ + +R L D TG I L++F + +NV G+ Sbjct: 57 NPDLPYVQILGRITGKEQIGEKHKRRIVARLTDETGSIELVWFQSLKWVDENVM-RGKVY 115 Query: 124 TVTGKIKKLKNRIIMVHPH---YIFHNSQDVNFPLIEAVYSLPTGL--------SVDLFK 172 V GK + HP Y + N L + VY+ L + + Sbjct: 116 IVFGKPTLFNGSFSISHPELEPYPRPTTMTGNLRL-QPVYNSTEKLKKFFLDSKGIQKLQ 174 Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232 +I+E L + E + +LQK S +A IH P KD E A RL ++E Sbjct: 175 TLIIE--QHLSEIRETLPMPVLQKYQMVSRKQALLNIHFP---KDVEALKAAERRLKFEE 229 Query: 233 LLAGQIALLLMRK----QFKKEIGIPINVEGKIAQKILRNI-PFSPTKSQESAIKDILQD 287 L Q+ LL +K +FK G G ++I PF T +Q+ IK+I D Sbjct: 230 LFFIQLQLLHNKKLRELKFK---GHRFEAVGSRVNTFYKDILPFEMTGAQKRVIKEIRMD 286 Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347 + +M R++QGDVGSGKT+VAL++M A + G QA +MAP ILA+QH+E I Sbjct: 287 TQRGIQMNRLVQGDVGSGKTVVALMSMLLANDNGFQACMMAPTEILARQHHESITSLLDG 346 Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407 V ++TG+ + R K + +G+ I++GTHAL +D + + L +V++DEQHRFG Sbjct: 347 KLSKVAVLTGSTTKKQRTKLHAELQNGEIDILVGTHALIEDKVVFKNLGMVVIDEQHRFG 406 Query: 408 VQQRLKLTQKATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466 V+QR KL +K T P H+L+MTATPIPRTL +T GD+D+S I E P GRKPI+T Sbjct: 407 VEQRAKLWRKNTVPPHILVMTATPIPRTLAMTLYGDLDVSVIDELPVGRKPIETRHFFEG 466 Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHG 523 + + +K +++G++ Y + P I+E ++ + + + + F I+I+HG Sbjct: 467 QRLRMFGFMKAEIAKGRQVYIVYPLIKESEKLDLLHLEAGIEQISDQFPRPEYQISIVHG 526 Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583 +MS+ DK+ M F +G ++++ATTVIEVG++V +ASI++IENAE FGL+QLHQLRGRV Sbjct: 527 KMSNADKQFEMQQFIDGKSQIMVATTVIEVGVNVPNASIMVIENAERFGLSQLHQLRGRV 586 Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643 GRG E S CIL+ LS + RL + T +GF I+E DL+ R G+I G +QSG+ + Sbjct: 587 GRGAEQSYCILMSGNKLSADGRLRLDTMVKTNNGFEISEIDLQLRGPGDITGTQQSGVLE 646 Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDL 673 +A +L+ AR IL +DP L Sbjct: 647 LKLADLATDQLILQEARSTVMDILNKDPQL 676 >gi|331004261|ref|ZP_08327739.1| ATP-dependent DNA helicase RecG [Lachnospiraceae oral taxon 107 str. F0167] gi|330411426|gb|EGG90838.1| ATP-dependent DNA helicase RecG [Lachnospiraceae oral taxon 107 str. F0167] Length = 683 Score = 353 bits (906), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 221/667 (33%), Positives = 366/667 (54%), Gaps = 24/667 (3%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFID-LLFYHPSSFIDRHYRPKISEISEERIVT 71 + +GVG+K + +L K+ + R I LL ++P +++ KISE++++ Sbjct: 6 VKNIKGVGEKTAQYLEKL-------DIRTIKGLLKHYPVRYLEYKAPTKISEVNKDEEAV 58 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 I I ++ SF Q R+ + D I ++++ + L+ +G GK K Sbjct: 59 IKATIVKNISFTGQNRKISTTKITDYIDVIDVIWY--NSPYLRATIKQGESYVFVGKFSK 116 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPEWI 189 +++ + HP + + + VY+L G++ + +K+I L + E++ Sbjct: 117 -RSKSTLEHPIIYTLDEYEKKIGSFKPVYALTAGINNNAMEKLIKSGLEYIDEDDFAEYL 175 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKD-FEWTSPARERLAYDELLAGQIAL-LLMRKQF 247 +L+K S S + IHNP FE +++RLA+D+ + LL K+ Sbjct: 176 PAFVLEKFSLESRLNSIKNIHNPLNTSCLFE----SKKRLAFDDFFRFLYGVKLLKNKRL 231 Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 K + + + ++I +PF T SQ+ + +IL DMS R++QGDVGSGKT Sbjct: 232 KVKSKNIVAKSTEYLEEIKSVLPFKLTSSQDRVVDEILDDMSSGIVTNRLVQGDVGSGKT 291 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQAHRR 365 ++ALI++ AV++G Q V+M P +LA+QH++ + + + + I+TG+M + Sbjct: 292 VIALISLYMAVKSGFQGVVMVPTEVLAKQHFKSMSGFLNRLKSPPRIGILTGSMTKKEHL 351 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 E+I G+ I+IGTHAL +++++ L LV+ DEQHRFGV+QR L+ K HVL+ Sbjct: 352 LMYEKIESGEIDILIGTHALLVENVKFKNLGLVVTDEQHRFGVRQRTTLSDKGENVHVLV 411 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 M+ATPIPRTL + GD+DIS I KP GR P+K +I N ++ + + + +G +A Sbjct: 412 MSATPIPRTLAIILYGDLDISTIESKPVGRLPVKNAVITENDREKAYRHILLEIKKGHQA 471 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543 Y ICP +EE + +V++ + + F+ + + ++HGRM +K+ +M + N Sbjct: 472 YIICPMVEESENIEAENVLDYGKKIADKFSQNCKVEVLHGRMQQKEKDDIMSRYVNKEID 531 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG+DV +A++I++ENAE FGLA LHQLRGRVGR E+ S + S Sbjct: 532 ILVSTTVIEVGVDVPNATVIMVENAERFGLATLHQLRGRVGRS-ELQSYAIFVRTSSSNI 590 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 + RL ++ N+ DGF IA DL R GE+ G+ QSG P F IA + + E+A++ Sbjct: 591 AKKRLEIIGNSNDGFYIASRDLVLRGPGELFGLAQSGEPDFGIADIYNDNDIFEMAKEAV 650 Query: 664 KHILTQD 670 I +D Sbjct: 651 DMIQCED 657 >gi|301066660|ref|YP_003788683.1| recG-like helicase [Lactobacillus casei str. Zhang] gi|300439067|gb|ADK18833.1| RecG-like helicase [Lactobacillus casei str. Zhang] Length = 718 Score = 353 bits (906), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 221/675 (32%), Positives = 369/675 (54%), Gaps = 25/675 (3%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 L L P++ GVG K L+ + + R DLLFY P + D + ++E + Sbjct: 39 LMALTDPVTVLPGVGPKREAGLASL----GIHTIR--DLLFYFPYRYDDLKVK-DLAEAA 91 Query: 66 EERIVTITGYISQH---SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122 ++ +T+ G + S F + R + L I + FF + LK+ F G + Sbjct: 92 DQEKLTVKGIVVTDPVISRFGPHRSR-VNVKLQIERSVILVTFFNQP--WLKDRFQMGDE 148 Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR- 181 + GK R + + SQD P + A+Y++ + + +I A R Sbjct: 149 AAIFGKWDA--KRRSLTGMKILATQSQDQ--PSMAAIYTVNKNVRMGTLLDLIKAAWERD 204 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 + + + + + S A+ + +H P + AR + E Q+ + Sbjct: 205 RQNINDLVPASIREHYRLMSDAQLVHGMHFPDTPAE---AKAARRTGVFREFFLFQLQIQ 261 Query: 242 LMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 +++ G+ I + + + ++ +PF+ T +Q+ + +I DM + N M R+LQG Sbjct: 262 ALKQLNANSSNGLAIPYDNQALRALIATLPFALTNAQKRVVNEICADMRRPNHMNRLLQG 321 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA I + AAV AG QA +M P +LA+QH+ + K ++ + + ++TG+ Sbjct: 322 DVGSGKTIVAAIVLYAAVTAGFQAALMVPTEVLAEQHFAKLTKLFKDFPVKLGLLTGSTS 381 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 RR+ L + G+ ++IIGTHAL Q + ++ L LV++DEQHRFGV QR L +K Sbjct: 382 TKKRRELLSELRDGRLNLIIGTHALIQKGVDFHALGLVVIDEQHRFGVNQRKILQEKGQK 441 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 P +L MTATPIPRTL +T+ G++D+S I E PAGRKPI T + N+ID+V ++ + Sbjct: 442 PDLLSMTATPIPRTLAITAYGEMDVSTIDELPAGRKPIATTWLRKNQIDQVYRIIREQVQ 501 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFK 538 G + + I P I E ++ + ++ + F + + + +A++HG+M +K+ +M +F Sbjct: 502 SGSQVFAITPLIAESEKIDLQNAEQLFVDMQKAVGNLGPVALLHGQMKPDEKDQIMRAFS 561 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 +G +L++TTV+EVG+DV +A+++ I +A+ FGL+QLHQLRGRVGRG++ + C+L+ P Sbjct: 562 DGKIAVLVSTTVVEVGVDVPNATVMAIFDADRFGLSQLHQLRGRVGRGQKAAQCLLIADP 621 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 ++ R+ ++ T DGFL+A++DL+ R G+I G KQSG+P+F +A P LE Sbjct: 622 K-NEQGIARMEIMTKTNDGFLLAQKDLEMRGSGDIFGDKQSGLPEFKVADPVGDFPTLEA 680 Query: 659 ARKDAKHILTQDPDL 673 A+K I DP L Sbjct: 681 AQKIVAQIFKTDPHL 695 >gi|15806915|ref|NP_295639.1| ATP-dependent DNA helicase RecG [Deinococcus radiodurans R1] gi|6459700|gb|AAF11469.1|AE002030_8 DNA helicase RecG [Deinococcus radiodurans R1] Length = 784 Score = 353 bits (906), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 225/648 (34%), Positives = 353/648 (54%), Gaps = 21/648 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILL-----NDG 97 D+L +P DR P ++++ E + VT+ G + S F+ + RP ++L Sbjct: 134 DVLHAYPHRHEDRRALPDLADVEEGQKVTVMGTVV--SKFR-RAPRPGMLILEIVLETPS 190 Query: 98 TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL--KNRIIMVHPHYIFHNSQDVNFPL 155 G + +F + ++ EG ++ +TG+ KK + ++ + H + ++ Sbjct: 191 GGRVKATWFNQP--WVEKQLREGARLVLTGRAKKFGRQTQLSVEHMETVDKAEGSLSTRR 248 Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215 I VY G+S + +K +AL P L +++ +K + +A IH PR Sbjct: 249 IVGVYDAKEGISQEFLRKAAYKALEAAP-LDDYLPAHWRRKYGLTDLGDALWGIHFPR-- 305 Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275 D + A RL +DE L ++ +LL + + G G+ K +PF T Sbjct: 306 -DEAQLARAHGRLRFDEYLFLELRMLLQGEDAVLQ-GKRFEARGEDINKFEAALPFRFTN 363 Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 +Q + +I DM +M R++QGDVGSGKT VA A+ AV G Q +MAP ILA+ Sbjct: 364 AQRRVLLEITDDMRSDQQMARLVQGDVGSGKTAVAACALYLAVRDGYQGALMAPTEILAR 423 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 QHY + Y + V ++ G M + + RIA G +++GT AL Q+++Q+ L Sbjct: 424 QHYANLCGYLGQLDVRVGLLIGAMTPKAKLEMQTRIAEGDVDVVVGTQALIQENVQFDNL 483 Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 L +VDE+HRFGVQQR +L A+ P VL+M+ATPIPR+L LT+ GD+++S I E P GR Sbjct: 484 GLAVVDEEHRFGVQQRRRLL--ASRPDVLVMSATPIPRSLALTAYGDLELSIIDELPPGR 541 Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 PI+T +I + + + +G++AY + IEE + + + + L Sbjct: 542 TPIETKLIQDTARQQAYGFVMGQIRQGRQAYVVTALIEENENLELLAATQLADDLKTILP 601 Query: 516 SS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + I ++HG+MS +K+ VM+ F+ +L++TTVIEVG+DV ++++++IENAE FGLA Sbjct: 602 EARIDLLHGKMSAAEKDYVMERFRAHEFDILVSTTVIEVGVDVPNSTVMVIENAERFGLA 661 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG S C+++ S + RL +++ + DGF+IAE DLK R GEI Sbjct: 662 QLHQLRGRVGRGSLQSYCVMIAG-ETSLKTRKRLKIIEGSTDGFVIAEADLKLRGPGEIR 720 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682 G +QSG+P +A ++E AR+ AKHIL DP L R Q +R Sbjct: 721 GTRQSGIPDLRLADLANDADIIEQARELAKHILANDPRLEHPRLQYLR 768 >gi|325105500|ref|YP_004275154.1| ATP-dependent DNA helicase RecG [Pedobacter saltans DSM 12145] gi|324974348|gb|ADY53332.1| ATP-dependent DNA helicase RecG [Pedobacter saltans DSM 12145] Length = 699 Score = 353 bits (906), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 243/690 (35%), Positives = 377/690 (54%), Gaps = 36/690 (5%) Query: 11 APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70 P+ +GVG + + L K I + DLL Y+P +ID+ KI+EI + Sbjct: 6 TPIEYLKGVGPQRAEVLKKEIGVFT-----YQDLLHYYPFRYIDKTRYYKINEIGFD--F 58 Query: 71 TITGYISQHSSFQLQKRRPYKILLN---DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 + + + SF++ + K L+ D TGE+ L++F + + ++ V G Sbjct: 59 PLVQILVRLKSFEVIGEKQSKRLVARVVDETGELELVWF-KGLKWIEKTLKINHLYVVFG 117 Query: 128 KIKKLKNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGL-SVDLFKKIIVEALSRL-- 182 K + M HP + S++ ++ VYS L L K I + +S L Sbjct: 118 KPTFFNGKPQMAHPEMELFSKESKERGNLSLQPVYSSTEKLKQFSLDSKGIQKLMSNLLD 177 Query: 183 -------PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235 VLP +I L+K S +A IH P + S A+ L ++EL Sbjct: 178 TVFSEIEEVLPSYI----LEKYKLLSRRDALLQIHFPTNSTVL---SRAQATLKFEELFF 230 Query: 236 GQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 Q+ LL ++ + K + + V K +PF T +Q+ +K+I D + + Sbjct: 231 IQLKLLKIKHLRTLKFKGNVFATVGNKFNYFYENLLPFQLTGAQKRVLKEIRFDSQKGIQ 290 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R++QGDVGSGKT+VAL++M A++ G QA +MAP ILA QHY IK + + + Sbjct: 291 MNRLVQGDVGSGKTVVALMSMLLAIDNGFQACMMAPTEILATQHYASIKSMLPDDFVNIA 350 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++TG+ + R+K LE + G +I++GTHAL ++++ + L L ++DEQHRFGV+QR K Sbjct: 351 LLTGSTKKKDRKKILEDLVIGTLNILVGTHALIEETVVFKHLGLAVIDEQHRFGVEQRAK 410 Query: 414 LTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 L +K PHVL+MTATPIPRTL ++ GD+D+S I E PAGRKPI+T+ + N+ + Sbjct: 411 LWKKNLIPPHVLVMTATPIPRTLAMSLYGDLDVSVINELPAGRKPIQTIHLYENQRLRMF 470 Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDID 529 ++ +++G++ Y + P I+E + + +++ + L F I+I+HG++ + Sbjct: 471 GYMRREIAKGRQVYVVYPLIQESAKLDLKNLQDGIEVLSREFPLPQYKISIVHGQLKPDE 530 Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589 KE M F G ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E Sbjct: 531 KEFEMQRFIKGQTQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGSEQ 590 Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649 S CIL+ LSK RL + T DGF I+E DL+ R G+I G +QSG+ +A Sbjct: 591 SFCILMSKDKLSKEGKVRLETMVKTNDGFEISEVDLQLRGPGDIEGTQQSGILDLKLADL 650 Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679 ++L ARK I+ DP+L + Q Sbjct: 651 TQDQNILHEARKTVLEIMEADPELQNAEHQ 680 >gi|124515677|gb|EAY57186.1| putative ATP-dependent DNA helicase (RecG) [Leptospirillum rubarum] Length = 713 Score = 353 bits (906), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 234/691 (33%), Positives = 375/691 (54%), Gaps = 52/691 (7%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L +PL +GKK + L A +DLL+ P + DR P I ++ + Sbjct: 8 LVSPLHVVPDIGKKRAEKLEL------AGYRTVLDLLYCFPFRYEDRRAAPSIRQLVTGK 61 Query: 69 IVTITGYISQHSSFQLQKRRPYKIL-----LNDGTGEITLLFFYRKTEMLKNV------F 117 +G++++ + + R +++ L DG+GE+ ++F ++ +LK + F Sbjct: 62 P---SGFVARVRDIRKKALRNFRVPVIEADLEDGSGEVRAVWFGQEY-LLKTLPPGSMGF 117 Query: 118 FEGR-KITVTGKIKKLKNRII-MVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKII 175 F G+ +I+ + L++ ++ + S VN I VY GLS F+K I Sbjct: 118 FYGKPEISDYDGLLTLRSPVVEKMDEEKKGQKSFHVN--RIVPVYHESHGLSSSFFRKTI 175 Query: 176 VEALSRL-----PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFEW----TSP 223 L+ L LP + L FPSI +H PR D + P Sbjct: 176 GVVLTALWGNVFEPLPHAVLTSLGIMGWFPSIVG----MHFPRTLPVEGDIDSLLLPEYP 231 Query: 224 ARERLAYDELLAGQIALLLMRKQFK-----KEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 R R ++EL + + +K+ + + P N E ++ ++P+ T++Q+ Sbjct: 232 PRRRFIFEELFFLEFLMGYKKKEIRLSSRSRNRQTPDNAETAFSE----SLPYVLTEAQK 287 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 A ++I DMS+ + M R+L GDVGSGKT+VA + + G Q+ +MAP +LAQQHY Sbjct: 288 RACREIASDMSKSSPMNRLLLGDVGSGKTVVAAWGVYLSFRGGMQSALMAPTEVLAQQHY 347 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 I + I + ++T ++ ++ +R +E + G ++GTHAL QD++ + L + Sbjct: 348 ASITSLLKPHGIRIALLTQSVKKSEKRALMEAVHRGDVDCVVGTHALIQDALVFSSLGYI 407 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 +VDEQH+FGV+QR L QK P VL+MTATPIPR+L L+ GD+D+S + E+P GR+P+ Sbjct: 408 VVDEQHKFGVEQRKTLIQKGENPDVLVMTATPIPRSLALSYFGDLDLSVLDERPPGRQPV 467 Query: 459 KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516 KT I+ NR + E + L G++ + + P IEE +E N R F L + + S Sbjct: 468 KTEIVTKNRRECFWDESVAPALDRGEQVFVVYPLIEESQEENIRDATSMFAVLSQKWPSV 527 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 S ++ G+M +K +VM++F++G +LL++TTV+EVG+D+ A+++++ENAE FGLAQL Sbjct: 528 STGLLTGKMPWEEKAAVMEAFRSGKIRLLVSTTVVEVGVDIPGATVMVVENAERFGLAQL 587 Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636 HQLRGR+GRG +C L+ P S+ S RL +L TEDGF +AEEDL+ R GE +G Sbjct: 588 HQLRGRIGRGSLPGTCYLIPGPDASRESVGRLEILVRTEDGFTVAEEDLRLRGPGEFIGT 647 Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 +QSG+P F +A +L +AR+ A L Sbjct: 648 RQSGLPMFQVASLVRDVDILLLAREQASMFL 678 >gi|218296433|ref|ZP_03497176.1| ATP-dependent DNA helicase RecG [Thermus aquaticus Y51MC23] gi|218243227|gb|EED09758.1| ATP-dependent DNA helicase RecG [Thermus aquaticus Y51MC23] Length = 767 Score = 353 bits (905), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 221/653 (33%), Positives = 356/653 (54%), Gaps = 32/653 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR--RPYKILLNDGTGE 100 D+L ++P + DR P + + + + T++ + + K+ + ++ D G Sbjct: 118 DVLHHYPRRYEDRRALPGVRYLEDGQKATLSVKVLAKELVRTPKKGMQLVQVKAMDAWGW 177 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160 L ++ + +L + EG + VTG++++ +N + ++ H+ ++ ++ I +Y Sbjct: 178 RLALVWFNQPWVLSQIE-EGATLIVTGRVQR-RNGVQLLVEHFEDEGTESLSTGRIVPIY 235 Query: 161 SLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220 G+ ++ + AL LP+ +E + + ++A IH P +D E Sbjct: 236 PAKEGVGQAFLRRTVHRALEMALPLPDPVEP-YREGLALMPYSQALRAIHFP---EDEEA 291 Query: 221 TSPARERLAYDELL---------AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271 A RL +DE L AG + L G VE + + +PF Sbjct: 292 LKKALLRLKFDEYLLLELKALLDAGGVVL-----------GRAFRVEEAWVEAFKKALPF 340 Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331 T++QE + +I QDM +M R+LQGDVGSGKT+VA A+ A G Q +MAP Sbjct: 341 PLTRAQERVMAEIAQDMQSPRQMARLLQGDVGSGKTVVAAFALYLAAMNGAQGALMAPTE 400 Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391 ILA+QH++ + +Y + VE++ G+ P R L R+ G+A + +GTHAL Q+ ++ Sbjct: 401 ILARQHFQNLTRYLFPLGVRVELLLGSTPAREREAILARLRSGEAQVAVGTHALIQEGVE 460 Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + L L +VDE+HRFGV QR L + A T P VL+M+ATPIPR+L LT GD+++S + E Sbjct: 461 FQDLGLAVVDEEHRFGVLQRRALLKMAKTPPDVLVMSATPIPRSLALTLYGDLEVSVLDE 520 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P GR P+KT ++P + + + +G + + + P IEE E + ++ + L Sbjct: 521 MPPGRTPVKTKVLPHRLRLQAYAFAREEIKKGHQVFVVAPAIEE-SELDLKAATLLYEEL 579 Query: 511 HEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 + IA++HG+M +KE+VM++F+ G LL++TTVIEVG+D+ A++II+ENAE Sbjct: 580 QGLLPEARIALLHGKMPAREKEAVMEAFRQGAYDLLVSTTVIEVGVDIPRATLIIVENAE 639 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629 FGLAQLHQLRGRVGRG I L S+ + RL VL+ + DGF IAE DLK R Sbjct: 640 RFGLAQLHQLRGRVGRGGLPGYAIFLAG-EASQKTMKRLKVLEASTDGFYIAEMDLKLRG 698 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682 GE+ G +QSG P+ + ++E AR AK I+ +DPDL+ + Q+++ Sbjct: 699 PGELRGTRQSGYPELRLGDLAEDTEVIERARALAKAIVEEDPDLSLPKHQALK 751 >gi|161507718|ref|YP_001577679.1| ATP-dependent DNA helicase RecG [Lactobacillus helveticus DPC 4571] gi|160348707|gb|ABX27381.1| ATP-dependent DNA [Lactobacillus helveticus DPC 4571] Length = 676 Score = 353 bits (905), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 221/683 (32%), Positives = 370/683 (54%), Gaps = 42/683 (6%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 N LFAP++ +GVG K + + G+ DLLFY P + + P + +I + Sbjct: 4 NALFAPVTDLKGVGTKTA------ADLGSLGIYSIYDLLFYFPFRYDELQTLP-LDQIMD 56 Query: 67 ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122 + V + G+++ S F +K R +K+ ++ ++ ++ F+ + LK+ G + Sbjct: 57 GQKVVLKGFVATEPFVSRFGYKKSRLSFKMRIDH---DVIMVNFFNQP-WLKSKIEIGEE 112 Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV---------YSLPTGLSVDLFKK 173 + + GK + + +I D I V SL L++D+F Sbjct: 113 VAIYGKYNVARQSLSAFK--FIAAKENDSGMAPIYPVNRHVKQKKLVSL-INLAIDVFLD 169 Query: 174 IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233 + + ++PE I +K + E +H+P+ + + + A+ + E Sbjct: 170 QVRD------IVPENIR----EKYRLLTDQEIIQKMHHPKNSTE---ANLAKRSAIFREF 216 Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 ++ L L+ K+ G P N + K ++ ++PF + Q+ + +I DM + Sbjct: 217 FIFELQLALLANHDGKQAGYPKNYDLKEIAQLTSSLPFELSDDQKEVVNEIFADMHSSGQ 276 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R+LQGDVGSGKT+VA+ A+ AA+ AG Q +M P ILA QH++ I + + + V Sbjct: 277 MRRLLQGDVGSGKTVVAVYAIFAAITAGYQVALMVPTEILATQHFKKIDELLRPLGVRVA 336 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++TGN RR+ + G +++IGTHAL Q+++ + KL LVI+DEQHRFGV QR Sbjct: 337 LLTGNTKTLERREIYRELMDGTINVMIGTHALIQENVIFKKLGLVIIDEQHRFGVGQRQA 396 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 L K P +L MTATPIPRTL LT GD+ +S+I PAGRKPI + ++ +V + Sbjct: 397 LINKGDQPDILAMTATPIPRTLALTVYGDMTVSEIHHMPAGRKPIISSWKTSTQMKDVYQ 456 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL-HEHFTSSIAIIHGRMSDIDKES 532 +++ L +G + Y + P I E + + ++ E L H+ + ++HG+M K+ Sbjct: 457 KMQDQLDQGFQIYAVTPLITESETLDLKNAEELHAKLSHDFPDQKVVLLHGQMPGPKKDE 516 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +M +F +G +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+ S C Sbjct: 517 IMIAFASGEINILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGKTQSYC 576 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 + + P + + R+ ++ T DGF +AEEDLK R EG++ G QSG+P+F + + Sbjct: 577 VFVADPK-TDSGKARMKIIAATNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNN 635 Query: 653 DSLLEIARKDAKHILTQDPDLTS 675 + L +A+K A+ ++ QDP L Sbjct: 636 YNTLVVAQKVARDLVQQDPKLAD 658 >gi|329667073|gb|AEB93021.1| ATP-dependent DNA helicase RecG [Lactobacillus johnsonii DPC 6026] Length = 679 Score = 353 bits (905), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 221/675 (32%), Positives = 373/675 (55%), Gaps = 30/675 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67 LF P++ +GVG K + L+ + IN DLLFY P + D P + +I + Sbjct: 8 LFEPVTELKGVGAKTATALASLGINT-------IYDLLFYFPFRYDDLETIP-LDQIEDG 59 Query: 68 RIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123 + V + G + S F +K R +K+ ++ +I ++ F+ + LK+ G+++ Sbjct: 60 QKVLLKGMVVTDPFVSRFGYRKTRLSFKMKIDH---DIIMVNFFNQP-WLKDKVESGKEV 115 Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-L 182 V GK + + + + +D F +YS+ L + +K+I AL + Sbjct: 116 AVYGKYQVARQSL---SGFKLVAEKKDSGFA---PIYSVNRHLKQNKLQKLIDLALEEAI 169 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 + E I + +K S +H+P+ + AR + E Q+ L Sbjct: 170 NEVGETIPASIREKYRLLSDRVLVEKMHHPKNDNE---AKIARRSAIFREFFLFQMQLAQ 226 Query: 243 MRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 + Q ++ G+ + ++++ IPF + Q+ + +I D+ K +M R+LQGD Sbjct: 227 LLSQRNEDAPGVEKKYDLAAVKELIEEIPFELSDDQKKVVNEIFADLHSKRQMRRLLQGD 286 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VA+ A+ AAV AG QA +M P ILAQQH+ I + + + V ++TG+ Sbjct: 287 VGSGKTVVAVFAIYAAVTAGYQAALMVPTEILAQQHFAKIDELLKPLGVRVALLTGDTKD 346 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 +++ +A G +++IGTHAL Q + + L LVI+DEQHRFGV QR L +K AP Sbjct: 347 LEKKEIYRELADGTINVVIGTHALIQKDVHFKNLGLVIIDEQHRFGVNQRNTLIKKGDAP 406 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 +L MTATPIPRTL LT GD+ +S+I P GRKP+ + +++ EV++ ++ L + Sbjct: 407 DILAMTATPIPRTLALTVYGDMAVSEIRHLPKGRKPVVSSWATSSKLREVLDLMRSQLDK 466 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540 G + Y + P I E ++S+ ++ + + +F ++ ++HG+M K +MDSF G Sbjct: 467 GFQIYVVTPLISESEKSDLKNAEDLQAKIAHYFKDENVVLLHGQMKGDQKNEIMDSFAAG 526 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+ S C+ + P Sbjct: 527 KINILVTTSVIEVGVDVPNANMMVIFNADRFGLSQLHQLRGRIGRGQTQSFCVFVSDPK- 585 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 ++ R++++ +T +GF +AEEDLK R EG++ G QSG+P+F + + L A+ Sbjct: 586 TEIGKKRMNIITSTSNGFKLAEEDLKLRGEGDVFGKAQSGLPQFQVGDVVNDYNALVTAQ 645 Query: 661 KDAKHILTQDPDLTS 675 K+A++++ DP L + Sbjct: 646 KEARNLIKSDPALVN 660 >gi|227534888|ref|ZP_03964937.1| DNA helicase RecG [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187644|gb|EEI67711.1| DNA helicase RecG [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 698 Score = 353 bits (905), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 220/675 (32%), Positives = 370/675 (54%), Gaps = 25/675 (3%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 L L P++ GVG K L+ + + R DLLFY P + D + ++E + Sbjct: 19 LMALTDPVTVLPGVGPKREAGLASL----GIHTIR--DLLFYFPYRYDDLKVK-DLAEAA 71 Query: 66 EERIVTITGYISQH---SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122 ++ +T+ G + S F + R + L I + FF + LK+ F G + Sbjct: 72 DQEKLTVKGIVVTDPVISRFGPHRSR-VNVKLQIERSVILVTFFNQP--WLKDRFQMGDE 128 Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR- 181 + GK R + + SQD P + A+Y++ + + +I A R Sbjct: 129 AAIFGKWDA--KRRSLTGMKILATQSQDQ--PSMAAIYTVNKNVRMGTLLDLIKAAWERD 184 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 + + + + + S A+ + +H P + AR + E Q+ + Sbjct: 185 QQNINDLVPASIREHYRLMSDAQLVHGMHFPDTPAE---AKAARRTGVFREFFLFQLQIQ 241 Query: 242 LMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 +++ G+ I + + + ++ +PF+ T +Q+ + +I DM + N M R+LQG Sbjct: 242 ALKQLNANSSNGLAIPYDNQALRALIATLPFALTNAQKRVVNEICADMRRPNHMNRLLQG 301 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA I + AAV AG QA +M P +LA+QH+ + K ++ + + ++TG+ Sbjct: 302 DVGSGKTVVAAIVLYAAVTAGFQAALMVPTEVLAEQHFAKLTKLFKDFPVKLGLLTGSTS 361 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 RR+ L + G+ ++IIGTHAL Q + ++ L LV++DEQHRFGV QR L +K Sbjct: 362 TKKRRELLSELRDGRLNLIIGTHALIQKGVDFHALGLVVIDEQHRFGVNQRKILQEKGQK 421 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 P +L MTATPIPRTL +T+ G++D+S I E PAGRKPI T+ + N+ID+V ++ + Sbjct: 422 PDLLSMTATPIPRTLAITAYGEMDVSTIDELPAGRKPIATMWLRKNQIDQVYRIIREQVQ 481 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFK 538 G + + I P I E ++ + ++ + F + + + +A++HG+M +K+ +M +F Sbjct: 482 SGSQVFAITPLIAESEKIDLQNAEQLFVDMQKAVGNLGPVALLHGQMKPDEKDQIMRAFS 541 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 +G +L++TTV+EVG+D+ +A+++ I +A+ FGL+QLHQLRGRVGRG++ + C+L+ P Sbjct: 542 DGKIAVLVSTTVVEVGVDIPNATVMAIFDADRFGLSQLHQLRGRVGRGQKAAQCLLIADP 601 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 ++ R+ ++ T DGFL+A++DL+ R G+I G KQSG+P+F +A P LE Sbjct: 602 K-NEQGIARMEIMTKTNDGFLLAQKDLEMRGSGDIFGDKQSGLPEFKVADPVGDFPTLEA 660 Query: 659 ARKDAKHILTQDPDL 673 A+K I DP L Sbjct: 661 AQKIVAQIFKTDPHL 675 >gi|329769811|ref|ZP_08261212.1| hypothetical protein HMPREF0433_00976 [Gemella sanguinis M325] gi|328838173|gb|EGF87791.1| hypothetical protein HMPREF0433_00976 [Gemella sanguinis M325] Length = 670 Score = 352 bits (904), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 231/669 (34%), Positives = 364/669 (54%), Gaps = 27/669 (4%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 +N L + T +GVG KY K +N + R D+L+ P + Sbjct: 2 INILEKSVGTIKGVGAKYL----KTLNELDIYTVR--DVLYNIPYRVSSSTDFSSSVK-D 54 Query: 66 EERIVTITGYISQHSSFQLQKRRPYKILLNDGT--GEITLLFFYRKTEMLKNVFFEGRKI 123 E++VT TG + S Q R + + T G + +++F + LK EGR+I Sbjct: 55 NEKVVT-TGKVETRVSTQFYGNRRSRSFFSLATPSGSVKIVYFNQM--YLKKNIIEGREI 111 Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183 V G N I + + ++ IE Y L G++ F K++ EA + L Sbjct: 112 VVKGTYNSANNTITASSISFNTDEKKQISGDKIEVFYHLKQGITQKRFAKLVDEAFNMLD 171 Query: 184 VLPEWIEKDLLQK--KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 E + DL+ + K + + +H P+ A++F+ AR+ A+ EL Q+ L Sbjct: 172 --HENVILDLVPENFKGIWKLDRILHTLHFPKNAEEFD---KARKMFAFHELFDYQLKLQ 226 Query: 242 LMRKQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L + E I++ + ++ ++PFS T +Q I +I+ D+ Q +M R+LQG Sbjct: 227 LQNINSRVEDNRYAISISNQDIKEFKESLPFSLTSAQNRVIDEIVDDLEQPYKMDRLLQG 286 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT VA + A+++G Q IMAP ILA QH+E ++ ++ I V ++T + P Sbjct: 287 DVGSGKTAVAAATLYGAIKSGYQTAIMAPTEILANQHFETFFEFFKDLNISVALLTSSTP 346 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 + R L + G+ +I+GTH+L Q+ +++ L VI DEQHRFGV+QR L+ K A Sbjct: 347 KKERNIILSLLESGEIELIVGTHSLIQEDVKFSSLKYVITDEQHRFGVKQRQILSNKGEA 406 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 + L+MTATPIPR+L +T + DI +S I E PAGRK +KT +V++ +++ L Sbjct: 407 VNSLMMTATPIPRSLAITLITDIKVSTIDELPAGRKKVKTYKANNKSFYKVLDNIRMELD 466 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFK 538 G++ Y +CP IEE ++ + ++V E + ++ E+ I+++HG+MS+ +K+ +++ F Sbjct: 467 NGRQGYVVCPLIEESEKMDLQNVEETYENIREYLPDEYKISVLHGKMSNKEKDEIVEKFL 526 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 +LI+TTVIEVG++V +A+ +II +A FGLA LHQLRGRVGR S CIL+ Sbjct: 527 KKEIHILISTTVIEVGVNVANATFMIIVDAHRFGLATLHQLRGRVGRSNYQSYCILVTD- 585 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 SK+ + L+N DGF IAE DLKQR G+ G KQSG+P F +A L+ + Sbjct: 586 --SKSERIDIMCLEN--DGFKIAEFDLKQRGPGDFFGTKQSGVPSFKVADLINDVDLMYL 641 Query: 659 ARKDAKHIL 667 A+K A I+ Sbjct: 642 AKKLALKII 650 >gi|313897578|ref|ZP_07831120.1| putative ATP-dependent DNA helicase RecG [Clostridium sp. HGF2] gi|312957530|gb|EFR39156.1| putative ATP-dependent DNA helicase RecG [Clostridium sp. HGF2] Length = 669 Score = 352 bits (904), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 217/637 (34%), Positives = 353/637 (55%), Gaps = 23/637 (3%) Query: 40 RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLND 96 R DLL +P + +P+ + E+RI+ +++ + + ++ +K++L D Sbjct: 23 RAEDLLTCYPFRYEHLEAKPRDTWEKEDRIIFEAVIVNRARVIRFRGKQSVTRFKVMLED 82 Query: 97 GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL- 155 +++L F R + F G+ IT+ GK +R+ + +N + + L Sbjct: 83 EELDVSL--FNRP---WVSAFTMGKVITIIGKYDG-GSRVTALQ-----YNFKPMKEQLG 131 Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 I VY++ G++ + I +A L +P+ I K L+K +A IH+P Sbjct: 132 IHPVYNVREGITQKELVRYIDKAWQALQNQIPDVIPKPYLEKYRLIPRKQALYFIHHP-- 189 Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSP 273 E + L Y+E L Q+++ ++ + + + G + ++ FS Sbjct: 190 -SSMEAVKQSLRHLKYEEFLKFQLSMQALKARDTEMVQGSAKQFSMGDVMDLKHSLSFSL 248 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T Q +++ILQD+S M R++QGDVG GKT+VA + A V A QAV MAP IL Sbjct: 249 TNDQNRVVEEILQDLSSDKVMYRMVQGDVGCGKTMVAAFGLYACVLAHKQAVFMAPTEIL 308 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QH +K+ + I V+++ ++ A ++ LER+ H + I++GTHALFQD ++YY Sbjct: 309 AKQHLTNLKRLFSDFDITVDVLYSSLKPAQKKDVLERLKHNEIDILVGTHALFQDDVEYY 368 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L +V+ DEQHRFGV QR K+ +K LLM+ATPIPRTL ++ GD+D+S I E P Sbjct: 369 DLGMVVADEQHRFGVAQRKKMLEKGEKVDFLLMSATPIPRTLAISLYGDMDVSTIQELPK 428 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 GR + T +I + ++E + + EG + Y +CP IE+ ++ + R+V E ++ + Sbjct: 429 GRSTVTTKLISSRSMSPILEAVLEKIDEGDQCYVVCPAIEKNEDMDMRNVTEIYDGMCAS 488 Query: 514 FTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 IA++HG+M+ +K++VM+ F + +L++TTVIEVG+DV A+I++I +A F Sbjct: 489 LGRRYRIALLHGKMNTQEKDAVMERFLHREVDILVSTTVIEVGVDVKAANIMVIYDAHRF 548 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631 GL+Q+HQLRGRVGRG C LL +S RL + + T DGF IA DL+ R G Sbjct: 549 GLSQIHQLRGRVGRGTRPGYCYLLSSTK-DPDSLQRLKICEQTRDGFAIARADLQLRGPG 607 Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668 +ILG +QSG+P F++ ++LE+AR+DA IL Sbjct: 608 DILGTRQSGVPGFILGDVIQDANILEVAREDAAEILA 644 >gi|257124969|ref|YP_003163083.1| ATP-dependent DNA helicase RecG [Leptotrichia buccalis C-1013-b] gi|257048908|gb|ACV38092.1| ATP-dependent DNA helicase RecG [Leptotrichia buccalis C-1013-b] Length = 689 Score = 352 bits (904), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 228/615 (37%), Positives = 345/615 (56%), Gaps = 18/615 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP-YKILLNDGTGEI 101 DLL++ P ++ +R KI+EI + V + G I + ++ R ++ +L+D +G I Sbjct: 37 DLLYFFPRAYENRSNHKKIAEILADEFVILQGTIVNVVNQYIKAGRTMFRAVLSDDSGMI 96 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF---PLIEA 158 L++F +KN G +ITV GK++K + +V+P Y N + I Sbjct: 97 ELVWF--NNRFVKNGIHIGDEITVYGKVRKTV-KFQLVNPEYKKINQASFDMHEQKQILP 153 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 +Y L + +K++ AL +L E + K+ LQK+ EA IH P Sbjct: 154 IYPSTESLRQQVIRKVMENALMDYGYLLQENLPKEFLQKEKLLGRKEAVLNIHFPESE-- 211 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK--IAQKILRNIPFSPTK 275 E S AR+R +E+L ++ +L R K +E + K ++++ + TK Sbjct: 212 -EKQSKARKRFMLEEILLLEMGILQNRFSVDKANKNLYKLEDNKSLVSKFIKSLDYELTK 270 Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 +Q+ IK+I ++ + R++QGDVGSGKT+V+ I + VE Q VIMAP ILA Sbjct: 271 AQKRVIKEIYSELKAGKIVNRLIQGDVGSGKTIVSFIMLLYMVENNYQGVIMAPTEILAT 330 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 QHY I N I VE++T ++ + K L I G I+IGTH+L +D++ + L Sbjct: 331 QHYLGIVDEFMNLDIRVELLTRSVKGKKKEKLLNEIKEGLVDIVIGTHSLIEDNVIFKNL 390 Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 L+++DEQHRFGV QR L K ++++M+ATPIPR+L LT GD+D+S I E PAGR Sbjct: 391 GLIVIDEQHRFGVTQRKLLRDKGNIANLIVMSATPIPRSLALTIYGDLDVSIIDELPAGR 450 Query: 456 KPIKTVIIPINRID--EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 PIKT I N ID ++ ++ + +G++ Y + P IEE + N +S E + Sbjct: 451 SPIKTKWIQ-NEIDRQKMYNFMEKKMKDGRQVYIVSPLIEESESLNVKSAQETYEEYISI 509 Query: 514 F-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 F I ++HGR + +K+ VM+ FKN +L++TTVIEVG++V +ASI++I +A+ FG Sbjct: 510 FPNRKIGLMHGRQTYKEKQKVMEQFKNHELDILVSTTVIEVGVNVPNASIMVIRDAQRFG 569 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 L+ LHQLRGRVGRG+ S C L ++ S RL V++ T DGF IAEEDLK R GE Sbjct: 570 LSSLHQLRGRVGRGKYQSYC-FLESETTNEISTKRLEVMEETTDGFKIAEEDLKLRNSGE 628 Query: 633 ILGIKQSGMPKFLIA 647 ILG +QSG+ L Sbjct: 629 ILGTRQSGVSDMLFT 643 >gi|291296567|ref|YP_003507965.1| ATP-dependent DNA helicase RecG [Meiothermus ruber DSM 1279] gi|290471526|gb|ADD28945.1| ATP-dependent DNA helicase RecG [Meiothermus ruber DSM 1279] Length = 787 Score = 352 bits (904), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 215/638 (33%), Positives = 347/638 (54%), Gaps = 17/638 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR--RPYKILLNDGTGE 100 DLL ++P + DR I E+ + T+ G + + ++ + ++ D G Sbjct: 135 DLLHHYPRRYEDRRTLQSIREVEDGAKATVVGKVLSRELVKTPRKGLQLVQVRFMDAWGW 194 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160 ++ + +LK + EG + ++G+++K ++ ++ + ++ I VY Sbjct: 195 KFTGVWFNQPWVLKQMP-EGASLVLSGRVQKRGGVTSLMVEYFEDEGGESLSTGRIVPVY 253 Query: 161 SLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220 G+ ++ AL +P+ +E L Q P + A H P + E Sbjct: 254 PAKEGIGQAFLRRAAWRALEAFQTIPDPLEPYLKQASLMP-LDRALRQAHFPSSEEQLEQ 312 Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280 A +RL +DE L ++ +++ +G V ++ ++ +PF+ T +QE Sbjct: 313 ---ALQRLKFDEFLLLELKVMI-ESGGSALLGRVFRVTPEMLERFRAALPFTLTGAQERV 368 Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340 + +IL DM + +M R++QGDVGSGKT VA A+ A + G Q +MAP ILA+QH+E Sbjct: 369 LSEILADMQSERQMARLVQGDVGSGKTAVAAAALFVAAQNGAQGALMAPTEILAKQHFEN 428 Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400 + +Y + V+++ G+M +R LER+ GQ +++GTHAL QD + ++ L L ++ Sbjct: 429 LTRYLYPLGVSVDLLVGSMSNGEKRSVLERLKSGQTQVVVGTHALIQDGVAFHDLGLAVI 488 Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460 DE+HRFGV QR +L P VL+M+ATPIPR+L LT GD+++S+I E P GR P++T Sbjct: 489 DEEHRFGVMQRRRLL--GQRPDVLVMSATPIPRSLALTLYGDLEVSQIDELPPGRTPVRT 546 Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-----T 515 I+ + + + +G + + + P IEE ES + + L E Sbjct: 547 KILTQKTRTQAYAFARQEIKKGHQVFVVTPMIEE-GESEATAELAAATRLREELEILLPD 605 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 I ++HG+M +K++VM+ FK G LL++TTVIEVG+D+ A+++IIENAE FGLAQ Sbjct: 606 VRIDLLHGKMKAEEKDAVMERFKQGAFDLLVSTTVIEVGVDIPQATVMIIENAERFGLAQ 665 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG S C+L+ SK + RL V++ + DGF IAE+DL+ R GE+ G Sbjct: 666 LHQLRGRVGRGGLESYCVLIAG-ETSKRTLERLRVIEESTDGFYIAEQDLRLRGPGELRG 724 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 +QSGMP + +++E +R AK IL DP L Sbjct: 725 TRQSGMPDLRLGDLASDQAIIEQSRALAKAILEADPYL 762 >gi|116495097|ref|YP_806831.1| ATP-dependent DNA helicase RecG [Lactobacillus casei ATCC 334] gi|116105247|gb|ABJ70389.1| ATP-dependent DNA helicase RecG [Lactobacillus casei ATCC 334] gi|327382643|gb|AEA54119.1| DNA helicase RecG [Lactobacillus casei LC2W] gi|327385837|gb|AEA57311.1| DNA helicase RecG [Lactobacillus casei BD-II] Length = 718 Score = 352 bits (904), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 220/675 (32%), Positives = 370/675 (54%), Gaps = 25/675 (3%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 L L P++ GVG K L+ + + R DLLFY P + D + ++E + Sbjct: 39 LMALTDPVTVLPGVGPKREAGLASL----GIHTIR--DLLFYFPYRYDDLKVK-DLAEAA 91 Query: 66 EERIVTITGYISQH---SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122 ++ +T+ G + S F + R + L I + FF + LK+ F G + Sbjct: 92 DQEKLTVKGIVVTDPVISRFGPHRSR-VNVKLQIERSVILVTFFNQP--WLKDRFQMGDE 148 Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR- 181 + GK R + + SQD P + A+Y++ + + +I A R Sbjct: 149 AAIFGKWDA--KRRSLTGMKILATQSQDQ--PSMAAIYTVNKNVRMGTLLDLIKAAWERD 204 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 + + + + + S A+ + +H P + AR + E Q+ + Sbjct: 205 QQNINDLVPASIREHYRLMSDAQLVHGMHFPDTPAE---AKAARRTGVFREFFLFQLQIQ 261 Query: 242 LMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 +++ G+ I + + + ++ +PF+ T +Q+ + +I DM + N M R+LQG Sbjct: 262 ALKQLNANSSNGLAIPYDNQALRALIATLPFALTNAQKRVVNEICADMRRPNHMNRLLQG 321 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA I + AAV AG QA +M P +LA+QH+ + K ++ + + ++TG+ Sbjct: 322 DVGSGKTVVAAIVLYAAVTAGFQAALMVPTEVLAEQHFAKLTKLFKDFPVKLGLLTGSTS 381 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 RR+ L + G+ ++IIGTHAL Q + ++ L LV++DEQHRFGV QR L +K Sbjct: 382 TKKRRELLSELRDGRLNLIIGTHALIQKGVDFHALGLVVIDEQHRFGVNQRKILQEKGQK 441 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 P +L MTATPIPRTL +T+ G++D+S I E PAGRKPI T+ + N+ID+V ++ + Sbjct: 442 PDLLSMTATPIPRTLAITAYGEMDVSTIDELPAGRKPIATMWLRKNQIDQVYRIIREQVQ 501 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFK 538 G + + I P I E ++ + ++ + F + + + +A++HG+M +K+ +M +F Sbjct: 502 SGSQVFAITPLIAESEKIDLQNAEQLFVDMQKAVGNLGPVALLHGQMKPDEKDQIMRAFS 561 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 +G +L++TTV+EVG+D+ +A+++ I +A+ FGL+QLHQLRGRVGRG++ + C+L+ P Sbjct: 562 DGKIAVLVSTTVVEVGVDIPNATVMAIFDADRFGLSQLHQLRGRVGRGQKAAQCLLIADP 621 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 ++ R+ ++ T DGFL+A++DL+ R G+I G KQSG+P+F +A P LE Sbjct: 622 K-NEQGIARMEIMTKTNDGFLLAQKDLEMRGSGDIFGDKQSGLPEFKVADPVGDFPTLEA 680 Query: 659 ARKDAKHILTQDPDL 673 A+K I DP L Sbjct: 681 AQKIVAQIFKTDPHL 695 >gi|238916890|ref|YP_002930407.1| ATP-dependent DNA helicase RecG [Eubacterium eligens ATCC 27750] gi|238872250|gb|ACR71960.1| ATP-dependent DNA helicase RecG [Eubacterium eligens ATCC 27750] Length = 685 Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 227/648 (35%), Positives = 353/648 (54%), Gaps = 31/648 (4%) Query: 43 DLLFYHPSSFIDRHYRP----KISEISEERIVTITGYISQHSSFQLQKR-RPYKILLNDG 97 DL+ +P + D ++ P IS SE V + G + + R + + + D Sbjct: 27 DLVGLYPRDY-DVYHEPVFVKDISHESEHTEVAVEGQVCKSPDIYGSGRLKILTVTIKDY 85 Query: 98 TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157 G+ +Y LKN G + G++ + ++ Y +++ L + Sbjct: 86 NGDSIKCSWY-NMPFLKNTLRLGARYVFRGRLVNKRGWLLEQPKMYTLAQYKELQGTL-Q 143 Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIEKDLLQKKSFPSIAE-AFNI-- 208 +Y L GL+ + K + +AL + +P++I K S+AE F+I Sbjct: 144 PIYPLTKGLTNNTVTKAVAQALEKYSAGLEKEYIPDYIRKRY-------SLAEHNFSIVN 196 Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268 IH P+ +++ AR RLA++E +A L ++ + + E K + L + Sbjct: 197 IHFPKTMEEY---VQARHRLAFEEFFLFTLATLSLKSANEHIPNSYVIPESKEKDQFLES 253 Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 + +S T +Q + ++ QDMS ++ R++QGDVGSGKT+VA IA+ V AG Q +MA Sbjct: 254 LSYSLTNAQLRTVSEVAQDMSGEHLCSRLIQGDVGSGKTVVATIALINTVIAGYQGALMA 313 Query: 329 PIGILAQQHYE-FIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 P +LA+QHYE F+K + + I VE++ G+M +++A RIA G A II+GTHAL Sbjct: 314 PTEVLARQHYESFVKGFEKAGLDIRVELLVGSMTAKQKKEAYARIADGTAGIIVGTHALI 373 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 Q+ ++Y +L LVI DEQHRFGV QR +QK +PH+L+M+ATPIPRTL + GD+DIS Sbjct: 374 QEKVEYKELALVITDEQHRFGVNQRRDFSQKGKSPHILVMSATPIPRTLAIILYGDLDIS 433 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 I E PA R PIK ++ + + + ++ G++ Y ICP +E+ + +VV+ Sbjct: 434 IIDEMPANRLPIKNCVVDESYRPKAYTFIHKQVASGRQCYVICPMVEDSEAVEAENVVDY 493 Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 L + I +HG+M K VM+ F +L++TTVIEVG++V +++++++ Sbjct: 494 TAMLKKELPDIRIEYLHGKMRPSLKNEVMERFAAHETDVLVSTTVIEVGVNVPNSTVMMV 553 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625 EN+E FGLAQLHQLRGRVGRGE S CI + S+ RL +L + DGF IAEEDL Sbjct: 554 ENSERFGLAQLHQLRGRVGRGEYQSYCIFVTGNK-SEKIRKRLEILNKSNDGFKIAEEDL 612 Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 + R G+ G++QSG F IA L+ A AK +L +DP+L Sbjct: 613 RLRGPGDFFGVRQSGDFDFGIADVFTDAKTLKEASDAAKDMLKKDPEL 660 >gi|260101410|ref|ZP_05751647.1| DNA helicase RecG [Lactobacillus helveticus DSM 20075] gi|260084750|gb|EEW68870.1| DNA helicase RecG [Lactobacillus helveticus DSM 20075] Length = 679 Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 221/683 (32%), Positives = 370/683 (54%), Gaps = 42/683 (6%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 N LFAP++ +GVG K + + G+ DLLFY P + + P + +I + Sbjct: 7 NALFAPVTDLKGVGTKTA------ADLGSLGIYSIYDLLFYFPFRYDELQTLP-LDQIMD 59 Query: 67 ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122 + V + G+++ S F +K R +K+ ++ ++ ++ F+ + LK+ G + Sbjct: 60 GQKVVLKGFVATEPFVSRFGYKKSRLSFKMRIDH---DVIMVNFFNQP-WLKSKIEIGEE 115 Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV---------YSLPTGLSVDLFKK 173 + + GK + + +I D I V SL L++D+F Sbjct: 116 VAIYGKYNVARQSLSAFK--FIAAKENDSGMAPIYPVNRHVKQKKLVSL-INLAIDVFLD 172 Query: 174 IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233 + + ++PE I +K + E +H+P+ + + + A+ + E Sbjct: 173 QVRD------IVPENIR----EKYRLLTDQEIIQKMHHPKNSTE---ANLAKRSAIFREF 219 Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 ++ L L+ K+ G P N + K ++ ++PF + Q+ + +I DM + Sbjct: 220 FIFELQLALLANHDGKQAGYPKNYDLKEIAQLTSSLPFELSDDQKEVVNEIFADMHSSGQ 279 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R+LQGDVGSGKT+VA+ A+ AA+ AG Q +M P ILA QH++ I + + + V Sbjct: 280 MRRLLQGDVGSGKTVVAVYAIFAAITAGYQVALMVPTEILATQHFKKIDELLRPLGVRVA 339 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++TGN RR+ + G +++IGTHAL Q+++ + KL LVI+DEQHRFGV QR Sbjct: 340 LLTGNTKTLERREIYRELMDGTINVMIGTHALIQENVIFKKLGLVIIDEQHRFGVGQRQA 399 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 L K P +L MTATPIPRTL LT GD+ +S+I PAGRKPI + ++ +V + Sbjct: 400 LINKGDQPDILAMTATPIPRTLALTVYGDMTVSEIHHMPAGRKPIISSWKTSTQMKDVYQ 459 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL-HEHFTSSIAIIHGRMSDIDKES 532 +++ L +G + Y + P I E + + ++ E L H+ + ++HG+M K+ Sbjct: 460 KMQDQLDQGFQIYAVTPLITESETLDLKNAEELHAKLSHDFPDQKVVLLHGQMPGPKKDE 519 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +M +F +G +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+ S C Sbjct: 520 IMIAFASGEINILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGKTQSYC 579 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 + + P + + R+ ++ T DGF +AEEDLK R EG++ G QSG+P+F + + Sbjct: 580 VFVADPK-TDSGKARMKIIAATNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNN 638 Query: 653 DSLLEIARKDAKHILTQDPDLTS 675 + L +A+K A+ ++ QDP L Sbjct: 639 YNTLVVAQKVARDLVQQDPKLAD 661 >gi|296121173|ref|YP_003628951.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM 3776] gi|296013513|gb|ADG66752.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM 3776] Length = 703 Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 229/681 (33%), Positives = 358/681 (52%), Gaps = 42/681 (6%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P+ R VG + + L+K+ + DLL + P +D +I + E T Sbjct: 9 PVEFLRTVGPQRAALLAKL------DILTVEDLLLWMPRDVLDLTRTTRIEGLIEGTTQT 62 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF-----YRKTEMLKNVFFEGRKITVT 126 + G + S + R ILL G + ++F +RK E +V VT Sbjct: 63 LRGIVVDRDSRISRGRSMVGILLKADGGYLRCVWFNQPYVFRKYEP-DSVLL------VT 115 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLP-V 184 G+ K R M HP S D P I Y L G+S+ +++ A+ + Sbjct: 116 GQPKLRDGRWEMSHPLVQRLESDDEQAGPGILPRYPLTEGISMHEMRRMTRAAVEECAHL 175 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 L + I Q +P+ +EA +H + +++E +R+RL ++LL Q+ L L R Sbjct: 176 LTDPIPASFRQVHQWPARSEACRGLHVAQSLEEYE---RSRKRLLLEDLLEFQLGLALRR 232 Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 + + +++ I + + +I +I R PF T Q A+++IL D+ + M R+LQ DVG Sbjct: 233 RMRIEQQEAIALPADQRIRARIARLFPFEWTNGQNEALEEILTDLEKTRPMHRLLQADVG 292 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 +GKT VA+ AM AV QA++MAP ILA+QH+E +++ +Q+ ++TG++ A Sbjct: 293 AGKTAVAIAAMLVAVANRMQAILMAPTEILARQHFETLEELLAESQVERRLLTGSLTAAQ 352 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 +R L I G A +I+GT +L Q+ +++ K LV++DEQH+FGV+QR + Q +T PH+ Sbjct: 353 KRTTLSEIEEGSAQLIVGTQSLIQEGVKFSKPGLVVIDEQHKFGVEQRARFAQGSTIPHM 412 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT-VIIPINRIDEVIERLKVVLSEG 482 L+MTATPIPRTL LT+ GD+D+S I E P GR+P+ T V+ + + LK L+EG Sbjct: 413 LVMTATPIPRTLCLTAFGDLDLSIIRELPPGRQPVSTHVVTDAPSARKAWDFLKSKLTEG 472 Query: 483 KKAYWICPQIEEKKESNFRS----------VVERFNSLHEHFTSS------IAIIHGRMS 526 ++AY ICP++E + S S E L++ S + ++HGRMS Sbjct: 473 RQAYVICPKVETTRSSEQASSPQIVQAAPQTWESAEDLYQRLQSKELAQFRVGLLHGRMS 532 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 + M F+ +L+AT+VIEVG+DV A+ +I+ +AE FGL+QLHQ RGRVGRG Sbjct: 533 PELRAETMRKFREHELDVLVATSVIEVGVDVPSATQMIVYHAEQFGLSQLHQFRGRVGRG 592 Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646 C L+ ++ +RL L+ T DGF +AE D + R G++LG +Q G Sbjct: 593 SRQGFC-FLFTKSTDPDALSRLKTLEQTNDGFAVAEADFQLRGHGDVLGTRQHGQTPLKR 651 Query: 647 AQPELHDSLLEIARKDAKHIL 667 A L+E AR A ++ Sbjct: 652 ANLIRDAQLVETARALATSLI 672 >gi|254372315|ref|ZP_04987806.1| hypothetical protein FTCG_01382 [Francisella tularensis subsp. novicida GA99-3549] gi|151570044|gb|EDN35698.1| hypothetical protein FTCG_01382 [Francisella novicida GA99-3549] Length = 648 Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 227/639 (35%), Positives = 361/639 (56%), Gaps = 22/639 (3%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75 F GVG+ L+K N + N DLL P + D I+ + + I G Sbjct: 6 FNGVGEATIKALAKC-NIHDPN-----DLLTIFPKDYKDTRVITPINHLVAGKRSLIQGR 59 Query: 76 ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 ++ + +++ ++ + +ND TG +++ F L + + GK++ Sbjct: 60 VT-NLTYKKFGKKFLRFNINDNTGFCSVILFKFYPNQLA-ILERSEYVRCYGKVE-FSLS 116 Query: 136 IIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLL 194 MVHP + N+ + AVY L + L K+I++ L V I LL Sbjct: 117 PQMVHPEWATVNNGECALKQGFSAVYRLKK-IPDRLISKMILKMLQDNRV-ENIIPSQLL 174 Query: 195 QKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 ++ + S +A +H D ++ S AR + ++E+LA ++A + K K P Sbjct: 175 RRFNLISFCDALYYVHALTNFIDEKYLSIARFSIKFEEMLAYKLAEQNIYKNIVKAQA-P 233 Query: 255 INVEGKIAQ-KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313 KI Q + +P+ T +Q+ AI +IL D+ + N M R+LQGDVG+GKT+VA IA Sbjct: 234 QLFLTKIQQNEFYEKLPYQLTNAQQRAITEILDDIKKSNAMNRLLQGDVGAGKTIVATIA 293 Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373 AAV++G Q +MAP ILA+QH+ F+ +Y + I V + G + R++L++I Sbjct: 294 AYAAVKSGYQVAMMAPTEILAEQHFSFLSQYLASFDIKVIPLLGKLSAKQTRESLDKIKD 353 Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------PHVLLMT 427 + +++GTHA+FQ+ ++Y L LVIVDEQHRFGV+QRL L K+++ PH L+++ Sbjct: 354 QKDCVVVGTHAIFQERVEYCNLGLVIVDEQHRFGVEQRLALVSKSSSNFSDLTPHQLIIS 413 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T G++ +S + E P RKPI T ++ + +IE++K + G++ YW Sbjct: 414 ATPIPRTLAMTLYGNLKLSILDELPPKRKPIITTVLNRAKKQNLIEKVKQAVLRGEQVYW 473 Query: 488 ICPQIEEKKESNF-RSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545 +CP +EE + +F + V + L E ++ +++G M DK M +FK +L Sbjct: 474 VCPLVEESENMDFLQDVKTLYQELLEALGKENVGLVYGSMKSKDKIEQMAAFKAKKYAVL 533 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 +ATTVIEVG+DV +A+I+II+NAE G++QLHQLRGRVGRG + S CILLY +S+ Sbjct: 534 VATTVIEVGVDVPNATIMIIDNAERLGISQLHQLRGRVGRGAKESYCILLYSDKISEVGK 593 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644 RLS+++ ++DGF +AE+DL+ R G+ILG +QSG+ F Sbjct: 594 RRLSLVRESQDGFYLAEKDLEIRGAGDILGKEQSGVSTF 632 >gi|256832897|ref|YP_003161624.1| DEAD/DEAH box helicase domain-containing protein [Jonesia denitrificans DSM 20603] gi|256686428|gb|ACV09321.1| DEAD/DEAH box helicase domain protein [Jonesia denitrificans DSM 20603] Length = 750 Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 242/721 (33%), Positives = 364/721 (50%), Gaps = 85/721 (11%) Query: 19 VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78 +G K + L+K+ T DLL++ P + + I ++E VT+ I Sbjct: 26 LGTKTATALTKL------GLTTAQDLLWHTPRRYAEPGRLTNIGALTEGEHVTVMARIHS 79 Query: 79 HSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLK---NVFFEGRKITVTGKIKKLK 133 S+ ++ R L+ D T +TL FF R L+ + GR TG ++ + Sbjct: 80 TSTRTMRSRSGALLTALVTDDTHTLTLAFFARSAGALRVHESKLQPGRVALFTGTVRDYR 139 Query: 134 NRIIMVHPHYIF--------HNSQDV-NFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-P 183 + HP YI ++ DV N P+ +Y G+ ++ + L +L P Sbjct: 140 GERQLTHPDYIIIGIDATTTDDAIDVANRPI--PIYPATAGVPTWRIERAVATVLGQLTP 197 Query: 184 V-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 +P+ + + ++ P+ EA +IH P D +W AR R+ DE Q AL+ Sbjct: 198 TDVPDPLPATIRERDQLPTAYEALRMIHQPHT--DSDWRR-ARHRMRIDEAFVIQTALIQ 254 Query: 243 MRKQFKKEIGIPI----NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 R + +P ++ G++A +P++ T+ Q DI D++ + M R+L Sbjct: 255 RRHTTRT---LPATARPHIAGQLADTFDATLPYTLTQGQRDVGADIATDLASTHPMQRLL 311 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKTLVAL AM ++ GQAV++AP +LA QH + TQ++ + G Sbjct: 312 QGDVGSGKTLVALRAMLQVIDNHGQAVLLAPTEVLATQHAATL------TQLLGPLANGP 365 Query: 359 MPQA---------------HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403 + + R++AL IA G A IIIGTHA+ D++ Y L LVIVDEQ Sbjct: 366 LTKGPATTITLLTGSLTTTQRKRALLDIASGMAGIIIGTHAVLSDNVHYADLGLVIVDEQ 425 Query: 404 HRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462 HRFGV QR L + T PH+L+MTATPIPRT+ +T GD+DIS +T+ PAGR I T Sbjct: 426 HRFGVHQRDTLRTRGTHTPHMLVMTATPIPRTVAMTVFGDLDISTLTDMPAGRAGITTHR 485 Query: 463 IPINR---IDEVIERLKVVLSEGKKAYWICPQIEEKKES--------------------- 498 +P + V +R + +G++ Y +CP+I + + Sbjct: 486 VPAKNPTWMSRVWQRAAEEIHQGRQVYVVCPRINDTEPDPTTEPDLTDPDTLPLDNTPTP 545 Query: 499 -NFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554 SV L + I ++HG MS DK++ M +F + T LL+ATTVIEVG Sbjct: 546 RTLASVTTTATMLANEPALAGVRIGVLHGGMSGDDKDAAMVNFADHTTPLLVATTVIEVG 605 Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614 ++V AS +II +A+ FG++QLHQLRGRVGRG E C+L+ + RL+ + +T Sbjct: 606 VNVPTASTMIILDADRFGISQLHQLRGRVGRGTEPGLCLLVADTQPGTPADDRLNAVAST 665 Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDL 673 DGF +A DL+ R+EG++LG QSG L + D+ L+ AR+DA I+T DP L Sbjct: 666 TDGFDLAARDLELRREGDVLGATQSGRGSSLKFLRVITDADLIATAREDAITIVTADPTL 725 Query: 674 T 674 T Sbjct: 726 T 726 >gi|309792329|ref|ZP_07686799.1| ATP-dependent DNA helicase RecG [Oscillochloris trichoides DG6] gi|308225644|gb|EFO79402.1| ATP-dependent DNA helicase RecG [Oscillochloris trichoides DG6] Length = 855 Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 242/738 (32%), Positives = 379/738 (51%), Gaps = 90/738 (12%) Query: 2 RPSFLNPLFAPLSTFRGVG--KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP 59 RP + P +P + + V ++ L K + DLL++ P + D Sbjct: 121 RPPLVEPPISPYAELKDVPGMQRKDLLAFKRLKLHTVE-----DLLYHFPHRYEDYSSHK 175 Query: 60 KISEISEERIVTITGYISQHSSFQLQKRRPYK--ILLNDGTGEITLLFFYRKTEMLKNVF 117 I+++ T+ G + + +L ++ P + I L D TG I +FF ++ M Sbjct: 176 HIADLIVGSNETVIGTVEE---TRLVEKTPLRVEITLGDETGIIKAVFFNQRWLMWD--L 230 Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD---VNFPLIEAVYSLPTGLSVDLFKKI 174 G +I ++GK+ M P + + + ++ + V+ L GL +D + Sbjct: 231 SVGDQIVLSGKVSVYGGVRQMTSPAWERYRPEPDALIHTGRLVPVHRLTKGL-IDRNARK 289 Query: 175 IVEALSRLPV------LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERL 228 +++ L + V LPE K K P + +A + +H P ++ E AR RL Sbjct: 290 MIKYLVDVSVPHLEDHLPEAQRK---AAKVLP-LGQAISQVHFPNTIQEIE---AARTRL 342 Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288 +DE L Q+ ++ + ++ E+G + + ++L ++PF+ T +Q A+++I DM Sbjct: 343 GFDEFLFIQLGVMQRKLLWQGELGYAMPHVPAVHAELLEHLPFALTGAQTRALEEIFADM 402 Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348 ++ M R+LQGDVGSGKT+VA ++ + G Q +MAP ILA+QHY+ +K+ Sbjct: 403 ARPVPMARLLQGDVGSGKTVVAAASLLQVIANGFQGALMAPTEILAEQHYKGLKRLLSRV 462 Query: 349 QII---------------------------------------------VEIITGNMPQAH 363 ++ V ++TG++ Sbjct: 463 RVPRQPRPEVEGADWRTRLSSEEAAQLAEIKALLGMSVEDDMDGAGVRVALLTGSLGAKE 522 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ LE IA G+ +I+GTHAL + +QY+ L L +VDEQHRFGV+QR +L K PH+ Sbjct: 523 RRRVLEGIAKGEVDLIVGTHALITEHVQYHSLGLAVVDEQHRFGVEQRQRLRDKGFNPHL 582 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL +T GD+D+S + E P GR+ I+T I D+ ++ + +G+ Sbjct: 583 LVMTATPIPRTLTMTIYGDLDVSILDELPPGRQTIRTRWISKTDRDKAYRHMRKEIEKGR 642 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS------IAIIHGRMSDIDKESVMDSF 537 +A+ ICP +EE + + S E +HE S + ++HG+M +K+ VM +F Sbjct: 643 QAFVICPLVEESDKIDLPSAEE----MHERLQSEVFPDLRVGLVHGKMLPREKDEVMVAF 698 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 + +L+AT VIEVGID+ +AS I+IE AE FGL+QLHQ RGRVGRGE S CIL+ H Sbjct: 699 RERAFDILVATAVIEVGIDIPNASTILIEGAERFGLSQLHQFRGRVGRGEHQSYCILIPH 758 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLL 656 ++ RL L T DGF +AE DL+ R GE G +QSG P IAQ L D LL Sbjct: 759 KE-NETGNKRLDALTETSDGFRLAEIDLELRGPGEFFGTRQSGTPDLKIAQ--LTDVGLL 815 Query: 657 EIARKDAKHILTQDPDLT 674 + A A+ IL +DP+L Sbjct: 816 KTASNVARAILDEDPELA 833 >gi|254368764|ref|ZP_04984777.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp. holarctica FSC022] gi|157121685|gb|EDO65855.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp. holarctica FSC022] Length = 679 Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 229/641 (35%), Positives = 362/641 (56%), Gaps = 26/641 (4%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75 F GVG+ L+K N + N DLL P + D I+ + + I G Sbjct: 6 FNGVGEATIKALAKY-NIHDPN-----DLLTIFPKDYKDTRVITPINHLVAGKRSLIQGR 59 Query: 76 ISQHSSFQLQKRRPYKILLNDGTG--EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133 ++ + +++ ++ + +ND TG + L FYR + + + GK++ Sbjct: 60 VT-NLTYKKFGKKFLRFNINDNTGFCSVILFKFYRNQLA---ILEKSEYVRCYGKVE-FS 114 Query: 134 NRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKD 192 MVHP + N+ + AVY L + L K+I++ L V I Sbjct: 115 LSPQMVHPEWATVNNGECTLKHGFSAVYRLKK-IPDRLISKMILKMLQDNRV-ENIIPSQ 172 Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252 LL++ + S +A +H D ++ S AR + ++E+LA ++A + K K Sbjct: 173 LLRRFNLISFCDALYYVHALTNFIDEKYLSIARFSIKFEEMLAYKLAEQNIYKNTVKAQA 232 Query: 253 IPINVEGKIAQ-KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 P KI Q + +P+ T +Q+ AI +IL D+ + N M R+LQGDVG+GKT+VA Sbjct: 233 -PQLFLTKIQQNEFYEKLPYQLTNAQQRAITEILDDIKKSNAMNRLLQGDVGAGKTIVAT 291 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 IA AAV++G Q +MAP ILA+QH+ F+ +Y + I V + G + R++L++I Sbjct: 292 IAAYAAVKSGYQVAMMAPTEILAEQHFSFLSQYLASFDIKVIPLLGKLSAKQTRESLDKI 351 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------PHVLL 425 + +++GTHA+FQ+ ++Y L LVIVDEQHRFGV+QRL L K+++ PH L+ Sbjct: 352 KDQKDCVVVGTHAIFQERVEYCNLGLVIVDEQHRFGVEQRLALVSKSSSNFSDLTPHQLI 411 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 ++ATPIPRTL +T G++ +S + E P RKPI T ++ + +IE++K + G++ Sbjct: 412 ISATPIPRTLAMTLYGNLKLSILDELPPKRKPIITTVLNRAKKQNLIEKVKQAVLRGEQV 471 Query: 486 YWICPQIEEKKESNF-RSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543 YW+CP +EE + +F + V + L E ++ +++G M DK M +FK Sbjct: 472 YWVCPLVEESENMDFLQDVKTLYQELLEALGKENVGLVYGSMKSKDKIEQMAAFKAKKYA 531 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L+ATTVIEVG+DV +A+I+II+NAE G++QLHQLRGRVGRG + S CILLY +S+ Sbjct: 532 VLVATTVIEVGVDVPNATIMIIDNAERLGISQLHQLRGRVGRGAKESYCILLYSDKISEV 591 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644 RLS+++ ++DGF +AE+DL+ R G+ILG +QSG+ F Sbjct: 592 GKRRLSLVRESQDGFYLAEKDLEIRGAGDILGKEQSGVSTF 632 >gi|134102556|ref|YP_001108217.1| ATP-dependent DNA helicase RecG [Saccharopolyspora erythraea NRRL 2338] gi|133915179|emb|CAM05292.1| putative ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338] Length = 750 Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 230/731 (31%), Positives = 371/731 (50%), Gaps = 82/731 (11%) Query: 11 APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70 A +S R +G K + L ++ DLL ++P + +R I+ + + Sbjct: 9 AEMSLERVLGAKTAKALESALDLSTVG-----DLLRHYPRRYAERGELTAIAGLEIDEHA 63 Query: 71 TITGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFF---YRKTEMLKNVFFEGRKITV 125 T+ + + S ++ RR + + DG + FF +R+ E+L GR+ Sbjct: 64 TVLAQVERVSKRSMKSRRGTIVEARITDGHRSLICTFFNQAWRERELLP-----GRRGMF 118 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFP--------LIEAVYSLPTGLSVDLFKKIIVE 177 GK+ +N++ + HP Y +D + + VY GL + + + Sbjct: 119 AGKVTAYRNQLQLAHPEYQLFTGEDEDVSEAAEEFAGALIPVYPSAQGLPSWSIARCVRQ 178 Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237 L + + +L + + A IH PR DF + A+ERL +DE LA Q Sbjct: 179 VLDTWDGEDDPLPGELRTRLGLTGLEAALRKIHRPR---DFGEVTAAQERLKWDEALAVQ 235 Query: 238 IALLLMRKQFKKEIG--IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 +AL +R + P +G +A + +PF T Q +DI D++ ++ M Sbjct: 236 LALARLRGEAHAHPAPACPRRDDGILA-AFDKRLPFELTGGQREIGEDIAADLAVEHPMN 294 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII---- 351 R++QG+VGSGKT+VAL AM V++G QA ++AP +LA QH + + + Sbjct: 295 RLVQGEVGSGKTVVALRAMLQVVDSGRQAAMLAPTEVLAAQHARSLAELLGELGMAGELG 354 Query: 352 -------VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404 V ++TG MP A RRKAL A G+A I++GTHA+ QD + + L LV+VDEQH Sbjct: 355 GAEQATRVTLLTGTMPAAQRRKALLEAASGEAGIVVGTHAIIQDRVSFADLGLVVVDEQH 414 Query: 405 RFGVQQRLKLTQKA---TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461 RFGV+QR L + +PHVL+MTATPIPRT+ +T GD++ S + E P GR PI T Sbjct: 415 RFGVEQRDALRARGGDEVSPHVLVMTATPIPRTVAMTVYGDLETSALRELPIGRSPISTN 474 Query: 462 IIPI----NRIDEVIERLKVVLSEGKKAYWICPQIEE-------KKESNFRSVVERFNSL 510 ++P+ + +D V +R+ ++ G + Y +CP+I + K++S+ S V+ + Sbjct: 475 VVPVAEKPSWLDRVWQRIHEEVAAGHQVYVVCPRIGDDEETEGKKRKSSRSSAVDDSDGA 534 Query: 511 HEH---------------------------FTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543 E + + ++HGR+ DK++VM F G Sbjct: 535 DEPPPEDSGGQRRPPVAVLDVAEQLAAGPLASLRLGVLHGRLPADDKDAVMRGFAAGDID 594 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L+ATTV+EVG++V +A++++I +A+ FG++QLHQLRGRVGRG C+L+ Sbjct: 595 VLVATTVVEVGVNVPNATVMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVSEAMGGTT 654 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKD 662 + RL + +T DGF +A DL+ R+EG+ILG QSG L L D ++ AR++ Sbjct: 655 TRERLEAVASTTDGFELARLDLELRREGDILGAAQSGRKSGLKMLSLLRDEDVIAQARQE 714 Query: 663 AKHILTQDPDL 673 A+ + +DP+L Sbjct: 715 AESFVAEDPEL 725 >gi|191638602|ref|YP_001987768.1| ATP-dependent DNA helicase RecG [Lactobacillus casei BL23] gi|190712904|emb|CAQ66910.1| ATP-dependent DNA helicase, RecG [Lactobacillus casei BL23] Length = 679 Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 219/672 (32%), Positives = 369/672 (54%), Gaps = 25/672 (3%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L P++ GVG K L+ + + R DLLFY P + D + ++E +++ Sbjct: 3 LTDPVTVLPGVGPKREAGLASL----GIHTIR--DLLFYFPYRYDDLKVK-DLAEAADQE 55 Query: 69 IVTITGYISQH---SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 +T+ G + S F + R + L I + FF + LK+ F G + + Sbjct: 56 KLTVKGIVVTDPVISRFGPHRSR-VNVKLQIERSVILVTFFNQP--WLKDRFQMGDEAAI 112 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPV 184 GK R + + SQD P + A+Y++ + + +I A R Sbjct: 113 FGKWDA--KRRSLTGMKILATQSQDQ--PSMAAIYTVNKNVRMGTLLDLIKAAWERDQQN 168 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 + + + + + S A+ + +H P + AR + E Q+ + ++ Sbjct: 169 INDLVPASIREHYRLMSDAQLVHGMHFPDTPAE---AKAARRTGVFREFFLFQLQIQALK 225 Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 + G+ I + + + ++ +PF+ T +Q+ + +I DM + N M R+LQGDVG Sbjct: 226 QLNANSSNGLAIPYDNQALRALIATLPFALTNAQKRVVNEICADMRRPNHMNRLLQGDVG 285 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA I + AAV AG QA +M P +LA+QH+ + K ++ + + ++TG+ Sbjct: 286 SGKTVVAAIVLYAAVTAGFQAALMVPTEVLAEQHFAKLTKLFKDFPVKLGLLTGSTSTKK 345 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 RR+ L + G+ ++IIGTHAL Q + ++ L LV++DEQHRFGV QR L +K P + Sbjct: 346 RRELLSELRDGRLNLIIGTHALIQKGVDFHALGLVVIDEQHRFGVNQRKILQEKGQKPDL 405 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L MTATPIPRTL +T+ G++D+S I E PAGRKPI T+ + N+ID+V ++ + G Sbjct: 406 LSMTATPIPRTLAITAYGEMDVSTIDELPAGRKPIATMWLRKNQIDQVYRIIREQVQSGS 465 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541 + + I P I E ++ + ++ + F + + + +A++HG+M +K+ +M +F +G Sbjct: 466 QVFAITPLIAESEKIDLQNAEQLFVDMQKAVGNLGPVALLHGQMKPDEKDQIMRAFSDGK 525 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L++TTV+EVG+D+ +A+++ I +A+ FGL+QLHQLRGRVGRG++ + C+L+ P + Sbjct: 526 IAVLVSTTVVEVGVDIPNATVMAIFDADRFGLSQLHQLRGRVGRGQKAAQCLLIADPK-N 584 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 + R+ ++ T DGFL+A++DL+ R G+I G KQSG+P+F +A P LE A+K Sbjct: 585 EQGIARMEIMTKTNDGFLLAQKDLEMRGSGDIFGDKQSGLPEFKVADPVGDFPTLEAAQK 644 Query: 662 DAKHILTQDPDL 673 I DP L Sbjct: 645 IVAQIFKTDPHL 656 >gi|268319221|ref|YP_003292877.1| ATP-dependent DNA helicase RecG [Lactobacillus johnsonii FI9785] gi|262397596|emb|CAX66610.1| ATP-dependent DNA helicase RecG [Lactobacillus johnsonii FI9785] Length = 679 Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 221/675 (32%), Positives = 374/675 (55%), Gaps = 30/675 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67 LF P++ +GVG K + L+ + IN DLLFY P + D P + +I + Sbjct: 8 LFEPVTELKGVGAKTATALASLGINT-------IYDLLFYFPFRYDDLETIP-LDQIEDG 59 Query: 68 RIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123 + V + G + S F +K R +K+ ++ +I ++ F+ + LK+ G+++ Sbjct: 60 QKVLLKGMVVTDPFVSRFGYRKTRLSFKMKIDH---DIIMVNFFNQP-WLKDKVESGKEV 115 Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-L 182 V GK + ++ + + +D F +YS+ L + +K+I AL + Sbjct: 116 AVYGKYQVVRQAL---SGFKLVAEKKDSGFA---PIYSVNRHLKQNKLQKLIDLALEEAI 169 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 + E I + +K S +H+P+ + AR + E Q+ L Sbjct: 170 NEVGETIPVSIREKYCLLSDRVLVEKMHHPKNGNE---AKIARRSAIFREFFLFQMQLAQ 226 Query: 243 MRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 + Q ++ G+ + ++++ IPF + Q+ + +I D+ K +M R+LQGD Sbjct: 227 LLSQRNEDAPGVEKKYDLAAVKELIEEIPFELSDDQKKVVNEIFADLHSKRQMRRLLQGD 286 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VA+ A+ AAV AG QA +M P ILAQQH+ I + + + V ++TG+ Sbjct: 287 VGSGKTVVAVFAIYAAVTAGYQAALMVPTEILAQQHFAKIDELLKPLGVRVALLTGDTKD 346 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 +++ +A G +++IGTHAL Q + + L LVI+DEQHRFGV QR L +K AP Sbjct: 347 LEKKEIYHELADGTINVVIGTHALIQKDVHFKDLGLVIIDEQHRFGVNQRNTLIKKGDAP 406 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 +L MTATPIPRTL LT GD+ +S+I P GRKP+ + +++ EV+ ++ L + Sbjct: 407 DILAMTATPIPRTLALTVYGDMAVSEIRHLPKGRKPVVSSWATSSKLREVLGLMRSQLDK 466 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540 G + Y + P I E ++S+ ++ + + +F + ++ ++HG+M K +MDSF G Sbjct: 467 GFQIYVVTPLISESEKSDLKNAEDLQAKIAHYFKNENVVLLHGQMKGDQKNEIMDSFAAG 526 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+ S C+ + P Sbjct: 527 KINILVTTSVIEVGVDVPNANMMVIFNADRFGLSQLHQLRGRIGRGQTQSFCVFVSDPK- 585 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 ++ R++++ +T +GF +AEEDLK R EG++ G QSG+P+F + + L A+ Sbjct: 586 TEIGKKRMNIITSTSNGFKLAEEDLKLRGEGDVFGKAQSGLPQFQVGDVVNDYNALVTAQ 645 Query: 661 KDAKHILTQDPDLTS 675 K+A++++ DP L + Sbjct: 646 KEARNLIKSDPALAN 660 >gi|322434362|ref|YP_004216574.1| ATP-dependent DNA helicase RecG [Acidobacterium sp. MP5ACTX9] gi|321162089|gb|ADW67794.1| ATP-dependent DNA helicase RecG [Acidobacterium sp. MP5ACTX9] Length = 779 Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 245/724 (33%), Positives = 368/724 (50%), Gaps = 95/724 (13%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP--YKILLN----- 95 DLL++ P + DR + ++ + ++ G + S L R P +++ L Sbjct: 33 DLLYHLPFRYEDRLNPKPLDQMKPGEMASLLGDV--RGSTLLTTRGPAIFELTLGLVPLG 90 Query: 96 -DGTG------EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN----RIIMVHPHYI 144 +G G + T+ + L+ F G+++ V GK++ ++ R ++ P + Sbjct: 91 AEGLGFGGRISQPTIKCLWFNGTYLRERFRLGQQVAVYGKLEASRSGGSGRFKLIQPQFE 150 Query: 145 F-----HNSQDVNFPLIEAVYSLPT----GLSVDLFKKIIVEALSRL--PVLPEWIEKD- 192 + D F +E +P G + K+ + R+ V E IE Sbjct: 151 ILPGPGASGPDAEFAALEMGRIVPVYESLGGTTPWGAKLTSKWTRRVMWSVFEELIESGA 210 Query: 193 ---------LLQKKSFPSIAEAFNIIHNPRK----AKDFEWTSPARERLAYDELLAGQIA 239 L ++ + P+ EA IH P A +P +RL ++E ++ Sbjct: 211 EIEETLPAPLRERLALPNRLEALKSIHFPEAGTPVADLMTARTPGHKRLIFEEFFYLELG 270 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L R++ ++ IG ++ I + +PF PT +Q+ + +I+ DM + M R+LQ Sbjct: 271 LELKRRKLRERIGTRFETTDQVRAAIRQVLPFHPTTAQKRVLAEIVGDMKKDQPMRRLLQ 330 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-------TQIIV 352 GDVGSGKT+VA+ A A+E G QA +MAP ILA QHY +K + V Sbjct: 331 GDVGSGKTIVAMQAALVAIENGFQAALMAPTEILATQHYLSARKLLADKLSPLTGKPYRV 390 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 ++TG++ +R++ RI G+AH+ IGTHAL ++ + + L LVIVDEQHRFGVQQR Sbjct: 391 TLLTGSLDLDRKRESRGRIMRGEAHLAIGTHALIEEKVDFANLGLVIVDEQHRFGVQQRF 450 Query: 413 KLTQKATA------PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466 KL +K A P VL+MTATPIPRTL LT GD+D+S I E P GR PI T Sbjct: 451 KLMKKPNAEGVMADPDVLVMTATPIPRTLALTIYGDMDVSVIDELPPGRTPIVTRRTSEA 510 Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIE-----------------------------EKKE 497 +V E ++ ++ G +AY + P IE +K E Sbjct: 511 SSAKVWEFVRKQVALGHQAYIVYPIIEGANDDQPELDFAPEPSAQDEPTPTKGKRGKKTE 570 Query: 498 SNF-----RSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550 S F RS + F+ L + ++HGRMS DKE M F+ G +LIATTV Sbjct: 571 SLFPKAKLRSATQSFDELRAGPLQGLRVGLLHGRMSADDKEVAMRRFQRGETDVLIATTV 630 Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610 IEVG+DV +AS+++I++AE FGLAQ+HQLRGRVGRG S CIL+ +S+++ RL Sbjct: 631 IEVGVDVPNASVMVIDHAERFGLAQMHQLRGRVGRGAAKSYCILMTGDKVSESAELRLDA 690 Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670 + +T++GF +AE DL QR GE G +Q+GMP+F +A +LEIA+ +A Q Sbjct: 691 MVHTQNGFELAELDLAQRGPGEFFGTRQAGMPEFRVADLGRDREVLEIAKSEAAR-FAQS 749 Query: 671 PDLT 674 PD T Sbjct: 750 PDPT 753 >gi|260890455|ref|ZP_05901718.1| ATP-dependent DNA helicase RecG [Leptotrichia hofstadii F0254] gi|260859697|gb|EEX74197.1| ATP-dependent DNA helicase RecG [Leptotrichia hofstadii F0254] Length = 689 Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 227/617 (36%), Positives = 345/617 (55%), Gaps = 22/617 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP-YKILLNDGTGEI 101 DLL++ P ++ +R KI+EI + V + G + + ++ R ++ +L+D +G I Sbjct: 37 DLLYFFPRAYENRSNHKKIAEILADEFVILQGTVVNVVNQYIKAGRTMFRAVLSDDSGMI 96 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA--- 158 L++F + +KN G +I V GK++K + +V+P Y +F + E Sbjct: 97 ELVWFNNR--FVKNGIHIGDEIAVYGKVRKTV-KFQLVNPEY--KKISQASFDMQEQKQI 151 Query: 159 --VYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215 +Y L +K++ AL +L E + K+ LQK+ EA IH P Sbjct: 152 LPIYPSTESLRQQAIRKVMENALMDYGYLLQENLPKEFLQKEKLLGRKEAVLNIHFPENE 211 Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK--IAQKILRNIPFSP 273 E S AR+R +E+L ++ +L R K +E + K ++ + + Sbjct: 212 ---EKQSKARKRFMLEEILLLEMGILQNRFSVDKANKNIYKLEDNKSLVSKFIKGLDYDL 268 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 TK+Q+ IK+I ++ + R++QGDVGSGKT+V+ I + VE Q VIMAP IL Sbjct: 269 TKAQKRVIKEIYSELKAGKIVNRLIQGDVGSGKTIVSFIMLLYMVENNYQGVIMAPTEIL 328 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A QHY I N I VE++TG++ + K L I G I+IGTH+L +D++ + Sbjct: 329 ATQHYLGIVDEFMNLDIRVELLTGSVKGKKKEKLLNEIKEGLVDIVIGTHSLIEDNVIFK 388 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L L+++DEQHRFGV QR L K ++++M+ATPIPR+L LT GD+D+S I E PA Sbjct: 389 NLGLIVIDEQHRFGVTQRKLLRDKGNLANLIVMSATPIPRSLALTIYGDLDVSIIDELPA 448 Query: 454 GRKPIKTVIIPINRID--EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511 GR PIKT I N ID ++ ++ + +G++ Y + P IEE + N +S E + Sbjct: 449 GRSPIKTKWIQ-NEIDRQKMYNFMEKKMKDGRQVYIVSPLIEESESLNVKSAQETYEEYI 507 Query: 512 EHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 F I ++HGR + +K+ VM+ FKN +L++TTVIEVG++V +ASI++I +A+ Sbjct: 508 SIFPNRKIGLMHGRQTYKEKQKVMEQFKNHELDILVSTTVIEVGVNVPNASIMVIRDAQR 567 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630 FGL+ LHQLRGRVGRG+ S C L ++ S RL V++ T DGF IAEEDLK R Sbjct: 568 FGLSSLHQLRGRVGRGKYQSYC-FLESETTNEISVKRLEVMEETTDGFKIAEEDLKLRNS 626 Query: 631 GEILGIKQSGMPKFLIA 647 GEILG +QSG+ L Sbjct: 627 GEILGTRQSGVSDMLFT 643 >gi|282600913|ref|ZP_05980107.2| ATP-dependent DNA helicase RecG [Subdoligranulum variabile DSM 15176] gi|282570824|gb|EFB76359.1| ATP-dependent DNA helicase RecG [Subdoligranulum variabile DSM 15176] Length = 694 Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 226/642 (35%), Positives = 345/642 (53%), Gaps = 25/642 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK--RRPYKILLNDGTGE 100 DLL +P +ID ++ + + + Q + K R + L D +G Sbjct: 46 DLLLCYPRKYIDYTQPYTVASAPYDVDCCVKATVLQKEPARRIKGGRVLSRALAADDSGV 105 Query: 101 ITLLFF---YRKTEML--KNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL 155 + L +F Y +++ + +FEGR V G + + ++HP + +Q P Sbjct: 106 LALSWFNASYAADKLIVGQTYYFEGR---VGGTLTHRE----LLHP-LVRTEAQVAASPF 157 Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215 + VY GL AL+ + L + + +LL + P+ A+A +H PR Sbjct: 158 VP-VYHGTEGLPASRQASCAQAALAYVEELQDPLPPELLIRYRMPTKAQAVRAVHAPRNQ 216 Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275 D + R RL ++EL QI + L+R +++ P+ ++P+ PT Sbjct: 217 ADL---AAGRRRLIFEELYLLQIGIFLLRSHGRRQTSAPMRP--MKLDPFWGSLPYQPTG 271 Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 +Q A ++IL D+ M R+LQGDVGSGKTLVA A+ A + G Q+ ++AP ILA+ Sbjct: 272 AQRRATEEILHDLCADVPMNRLLQGDVGSGKTLVAAAAIWFAAQNGWQSAMLAPTEILAR 331 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 QH + + I V ++ G M + +R AL IA G+A +++GTHA+ DS+ + L Sbjct: 332 QHAATLADRLEPFGINVTLLVGGMKASEKRIALSAIADGRAGLVVGTHAVLTDSVVFKNL 391 Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 L IVDEQHRFGV+QR L KA +PH+L+M+ATPIPRTL L GD+DIS + E P GR Sbjct: 392 GLAIVDEQHRFGVRQRGLLAGKAQSPHLLVMSATPIPRTLGLLMYGDLDISVLDELPPGR 451 Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-ESNFRSVVERFNSLHEHF 514 KPIKT I + ++ L + G + Y +CP IEE + ++ ++V + + + Sbjct: 452 KPIKTWFINGKKRRDMYGFLDKQIEAGHQVYIVCPAIEENELDTGMQAVNKYYTEVACAM 511 Query: 515 TS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 I ++HG+M +K+ VM FK G +L++TTVIEVG+DV +A+ ++IENAE FG Sbjct: 512 LPHRRIGLLHGKMKPKEKDEVMQQFKAGELDVLVSTTVIEVGVDVPNATAMVIENAERFG 571 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 L+ LHQLRGRVGRG S CIL+ + + RL L +T DGF +A+ DL+ R G+ Sbjct: 572 LSALHQLRGRVGRGAADSCCILISDNE-NDSVRERLRFLCHTSDGFAVAKYDLETRGPGD 630 Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 G Q G+P +A L +A+ +AK +L DP+LT Sbjct: 631 FFGQAQHGLPTLRVADLVQDTRTLRVAQDEAKALLAADPNLT 672 >gi|118496945|ref|YP_897995.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp. novicida U112] gi|194324173|ref|ZP_03057947.1| type III restriction enzyme, res subunit family [Francisella tularensis subsp. novicida FTE] gi|118422851|gb|ABK89241.1| ATP-dependent DNA helicase [Francisella novicida U112] gi|194321620|gb|EDX19104.1| type III restriction enzyme, res subunit family [Francisella tularensis subsp. novicida FTE] Length = 679 Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 224/638 (35%), Positives = 360/638 (56%), Gaps = 20/638 (3%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75 F GVG+ L+K N + N DLL P + D I+ + + I G Sbjct: 6 FNGVGEATIKALAKY-NIHDPN-----DLLTIFPKDYKDTRVITPINHLVAGKRSLIQGR 59 Query: 76 ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 ++ + +++ ++ + +ND TG +++ F L + + + GK++ Sbjct: 60 VT-NLTYKKFGKKFLRFNINDSTGFCSVILFKFYPNQLA-ILEKSEYVRCYGKVE-FSLS 116 Query: 136 IIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLL 194 MVHP + N+ + AVY L + L K+I++ L V I LL Sbjct: 117 PQMVHPEWATVNNGECALKQGFSAVYRLKK-IPDRLISKMILKMLQDNRV-ENIIPSQLL 174 Query: 195 QKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 ++ + S +A +H D ++ S AR + ++E+LA ++A + K K Sbjct: 175 RRFNLISFCDALYYVHALTNFIDEKYLSIARFSIKFEEMLAYKLAEQNIYKNTVKAQAPQ 234 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 I + + +P+ T +Q+ AI +IL D+ + N M R+LQGDVG+GKT+VA IA Sbjct: 235 IFLTKIQQNEFYEKLPYQLTNAQQRAITEILDDIKKSNAMNRLLQGDVGAGKTIVATIAA 294 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 AAV++G Q +MAP ILA+QH+ F+ +Y + I V + G + R++L++I Sbjct: 295 YAAVKSGYQVAMMAPTEILAEQHFSFLSQYLASFDIKVIPLLGKLSAKQTRESLDKIKDQ 354 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------PHVLLMTA 428 + +++GTHA+FQ+ ++Y L LVIVDEQHRFGV+QRL L K+++ PH L+++A Sbjct: 355 KDCVVVGTHAIFQERVEYCNLGLVIVDEQHRFGVEQRLALVSKSSSNFSDLTPHQLIISA 414 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488 TPIPRTL +T G++ +S + E P RKPI T ++ + +IE++K + G++ YW+ Sbjct: 415 TPIPRTLAMTLYGNLKLSILDELPPKRKPIITTVLNRAKKQNLIEKVKQAVLRGEQVYWV 474 Query: 489 CPQIEEKKESNF-RSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 CP +EE + +F + V + L E ++ +++G M DK M +FK +L+ Sbjct: 475 CPLVEESENMDFLQDVKTLYQELLEALGKENVGLVYGSMKSKDKIEQMAAFKAKKYAVLV 534 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 ATTVIEVG+DV +A+I+II+NAE G++QLHQLRGRVGRG + S CILLY +S+ Sbjct: 535 ATTVIEVGVDVPNATIMIIDNAERLGISQLHQLRGRVGRGAKESYCILLYSDKISEVGKR 594 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644 RLS+++ ++DGF +AE+DL+ R G+ILG +QSG+ F Sbjct: 595 RLSLVRESQDGFYLAEKDLEIRGAGDILGKEQSGVSTF 632 >gi|326330642|ref|ZP_08196946.1| ATP-dependent DNA helicase RecG [Nocardioidaceae bacterium Broad-1] gi|325951483|gb|EGD43519.1| ATP-dependent DNA helicase RecG [Nocardioidaceae bacterium Broad-1] Length = 754 Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 239/711 (33%), Positives = 374/711 (52%), Gaps = 88/711 (12%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRR----PYKI--LLND 96 DLL++ P ++ + ++ E ++T+ G + + Q RR Y++ L Sbjct: 33 DLLYHFPRRYLRTADLSQTPQLHEGEMLTVLGEVVRSVVRQHTDRRTGRPAYRVETQLKA 92 Query: 97 GTGEITLLFFY---RKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153 GT ++ L FF R E + V G + GK + + +P + + Sbjct: 93 GTADLQLTFFSKSQRIAEWRRGVLAPGVRGVFVGKAGSFRGEWQLANPQMVVFGDPSDSE 152 Query: 154 PLIEA---------------VYSLPTGLS-VDL-----FKKIIVEALSRLPVLPEWIEKD 192 EA +Y L GL D+ F + +VE ++ VLPE Sbjct: 153 NAAEAADNQMAVEELTELFPIYPLTAGLQHWDVMRAVRFARQVVEDVT--DVLPE----Q 206 Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252 L + P + +A ++IH P + KD + A+ R ++E L Q+ L R+ + +G Sbjct: 207 LRETYDVPGLRDALDLIHAPHELKDVQR---AQHRFRFEEALGLQLVLGRRRRALQA-LG 262 Query: 253 IPINVEG--KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310 G + + +PF+ TK QE+ +++ ++Q + M R+LQG+VGSGKTLVA Sbjct: 263 TTARTGGVHHLLEAFDARLPFTLTKGQETIGEELETALAQPHPMNRLLQGEVGSGKTLVA 322 Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN---------------TQIIVEII 355 L AM V++GGQA ++AP +LAQQH+ I + Q VE++ Sbjct: 323 LRAMLRVVDSGGQAALLAPTEVLAQQHHRSITAMLGDLAASGLAGGLFAGDQEQTHVELL 382 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 TG+M + R+ L RIA G+A I++GTHAL QD + + L LV+VDEQHRFGV+QR LT Sbjct: 383 TGSMTKTQRKGPLSRIATGEAGIVVGTHALLQDQVMFDDLGLVVVDEQHRFGVEQRAALT 442 Query: 416 QKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI----NRIDE 470 KA T PH+L+MTATPIPRT+ +T GD+++S +TE PAGR I+T ++ + I Sbjct: 443 DKAGTPPHLLVMTATPIPRTVAMTVFGDLEVSTLTELPAGRAEIQTNLVSLVDHPAWIAR 502 Query: 471 VIERLKVVLSEGKKAYWICPQIE----EKKESNFRSV-------------VERFNSLHEH 513 V ER+K + +G + Y + P+I E+ ES+ R + + + E Sbjct: 503 VWERVKEEVEKGHQVYVVAPRISGDESEQGESDQRDFDADGNEVASAKGQLSAVDEVTEE 562 Query: 514 FTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 T+ ++A +HG++ +KE M +F G +LIATTVIEVG+DV +A+ ++I + Sbjct: 563 LTNGPLRGLNVAKLHGKLPAEEKERTMSAFAAGDIDVLIATTVIEVGVDVPNATTMVILD 622 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627 A+ FG++QLHQLRGRVGRG C+L+ H + TRL + T DGF ++ DL Q Sbjct: 623 ADRFGVSQLHQLRGRVGRGGLHGLCLLVSHAEAGTPARTRLDAVAETTDGFALSRVDLDQ 682 Query: 628 RKEGEILGIKQSGMPKFLIAQPELHD--SLLEIARKDAKHILTQDPDLTSV 676 R+EG++LG QSG L + L D ++L+ AR+ A+ +L +D +L + Sbjct: 683 RREGDVLGASQSGRRSSLESLRVLRDEETILQ-AREAAESLLEKDVELATA 732 >gi|208780398|ref|ZP_03247739.1| type III restriction enzyme, res subunit family [Francisella novicida FTG] gi|208743766|gb|EDZ90069.1| type III restriction enzyme, res subunit family [Francisella novicida FTG] Length = 679 Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 227/639 (35%), Positives = 361/639 (56%), Gaps = 22/639 (3%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75 F GVG+ L+K N + N DLL P + D I+ + + I G Sbjct: 6 FNGVGEATIKALAKC-NIHDPN-----DLLTIFPKDYKDTRVITPINHLVAGKRSLIQGR 59 Query: 76 ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 ++ + +++ ++ + +ND TG +++ F L + + GK++ Sbjct: 60 VT-NLTYKKFGKKFLRFNINDNTGFCSVILFKFYPNQLA-ILERSEYVRCYGKVE-FSLS 116 Query: 136 IIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLL 194 MVHP + N+ + AVY L + L K+I++ L V I LL Sbjct: 117 PQMVHPEWATVNNGECALKQGFSAVYRLKK-IPDRLISKMILKMLQDNRV-ENIIPSQLL 174 Query: 195 QKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 ++ + S +A +H D ++ S AR + ++E+LA ++A + K K P Sbjct: 175 RRFNLISFCDALYYVHALTNFIDEKYLSIARFSIKFEEMLAYKLAEQNIYKNTVKAQA-P 233 Query: 255 INVEGKIAQ-KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313 KI Q + +P+ T +Q+ AI +IL D+ + N M R+LQGDVG+GKT+VA IA Sbjct: 234 QLFLTKIQQNEFYEKLPYQLTNAQQRAITEILDDIKKSNAMNRLLQGDVGAGKTIVATIA 293 Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373 AAV++G Q +MAP ILA+QH+ F+ +Y + I V + G + R++L++I Sbjct: 294 AYAAVKSGYQVAMMAPTEILAEQHFSFLSQYLASFDIKVIPLLGKLSAKQTRESLDKIKD 353 Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------PHVLLMT 427 + +++GTHA+FQ+ ++Y L LVIVDEQHRFGV+QRL L K+++ PH L+++ Sbjct: 354 QKDCVVVGTHAIFQERVEYCNLGLVIVDEQHRFGVEQRLALVSKSSSNFSDLTPHQLIIS 413 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T G++ +S + E P RKPI T ++ + +IE++K + G++ YW Sbjct: 414 ATPIPRTLAMTLYGNLKLSILDELPPKRKPIITTVLNRAKKQNLIEKVKQAVLRGEQVYW 473 Query: 488 ICPQIEEKKESNF-RSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545 +CP +EE + +F + V + L E ++ +++G M DK M +FK +L Sbjct: 474 VCPLVEESENMDFLQDVKTLYQELLEALGKENVGLVYGSMKSKDKIEQMAAFKAKKYAVL 533 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 +ATTVIEVG+DV +A+I+II+NAE G++QLHQLRGRVGRG + S CILLY +S+ Sbjct: 534 VATTVIEVGVDVPNATIMIIDNAERLGISQLHQLRGRVGRGAKESYCILLYSDKISEVGK 593 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644 RLS+++ ++DGF +AE+DL+ R G+ILG +QSG+ F Sbjct: 594 RRLSLVRESQDGFYLAEKDLEIRGAGDILGKEQSGVSTF 632 >gi|134301433|ref|YP_001121401.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp. tularensis WY96-3418] gi|134049210|gb|ABO46281.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp. tularensis WY96-3418] Length = 679 Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 227/639 (35%), Positives = 362/639 (56%), Gaps = 22/639 (3%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75 F GVG+ L+K N + N DLL P + D I+ + + I G Sbjct: 6 FNGVGEATIKALAKY-NIHDPN-----DLLTIFPKDYKDTRVITPINHLVAGKRSLIQGR 59 Query: 76 ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 ++ + +++ ++ + +ND TG +++ F L + + + GK++ Sbjct: 60 VT-NLTYKKFGKKFLRFNINDNTGFCSVILFKFYPNQLA-ILEKSEYVRCYGKVE-FSLS 116 Query: 136 IIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLL 194 MVHP + N+ + AVY L + L K+I++ L V I LL Sbjct: 117 PQMVHPEWATVNNGECALKQGFSAVYRLKK-IPDRLISKMILKMLQDNRV-ENIIPSQLL 174 Query: 195 QKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 ++ + S +A +H D ++ S AR + ++E+LA ++A + K K P Sbjct: 175 RRFNLISFCDALYYVHALTNFIDEKYLSIARFSIKFEEMLAYKLAEQNIYKNTVKAQA-P 233 Query: 255 INVEGKIAQ-KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313 KI Q + +P+ T +Q+ AI +IL D+ + N M R+LQGDVG+GKT+VA IA Sbjct: 234 QLFLTKIQQNEFYEKLPYQLTNAQQRAITEILDDIKKSNAMNRLLQGDVGAGKTIVATIA 293 Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373 AAV++G Q +MAP ILA+QH+ F+ +Y + I V + G + R++L+RI Sbjct: 294 AYAAVKSGYQVAMMAPTEILAEQHFSFLSQYLASFDIKVIPLLGKLSAKQTRESLDRIKD 353 Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------PHVLLMT 427 + +++GTHA+FQ+ ++Y L LVIVDEQHRFGV+QRL L K+++ PH L+++ Sbjct: 354 QKDCVVVGTHAIFQERVEYCNLGLVIVDEQHRFGVEQRLALVSKSSSNFSDLTPHQLIIS 413 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T G++ +S + E P RKPI T ++ + +IE++K + G++ YW Sbjct: 414 ATPIPRTLAMTLYGNLKLSILDELPPKRKPIITTVLNRAKKQNLIEKVKQAVLRGEQVYW 473 Query: 488 ICPQIEEKKESNFRSVVER-FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545 +CP +EE + +F V+ + L E ++ +++G M DK M +FK +L Sbjct: 474 VCPLVEESENMDFLQAVKTLYQELLEALGKENVGLVYGSMKSKDKIEQMAAFKAKKYAVL 533 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 +ATTVIEVG+DV +A+I+II+NAE G++QLHQLRGRVGRG + S CILLY +S+ Sbjct: 534 VATTVIEVGVDVPNATIMIIDNAERLGISQLHQLRGRVGRGAKESYCILLYSDKISEVGK 593 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644 RLS+++ ++DGF +AE+DL+ R G+I+G +QSG+ F Sbjct: 594 RRLSLVRESQDGFYLAEKDLEIRGAGDIIGKEQSGVSTF 632 >gi|116330156|ref|YP_799874.1| ATP-dependent DNA helicase, recG-related [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116123845|gb|ABJ75116.1| ATP-dependent DNA helicase, recG-related [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 724 Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 230/706 (32%), Positives = 379/706 (53%), Gaps = 58/706 (8%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 N L P++ +GVG + L+ I DLL + P ++DR + + Sbjct: 15 NELLLPVTVIKGVGSSKAAALASI------GIHTLQDLLNFFPRRYLDRSLTDNVLLKTG 68 Query: 67 ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 E + I + + + + R + + E + F+R + +F G + VT Sbjct: 69 ETVTLIVEVVDAYLAHGKKSR--FVVGAKTKNNERISIVFFRGVVFFQKIFQPGTTLVVT 126 Query: 127 GKIKKLKNRIIMVHPHY-IFHN----SQDVN---------------------------FP 154 G+++ + ++HP Y I N S +N P Sbjct: 127 GRLEYFRG-FQLIHPDYEILANAIKPSYTINSTNLDKKSRQQEPELAELPEMIHAGRIIP 185 Query: 155 LIEAVYSLPT-GLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 L + L + GL F+KI+ AL RL + E + +++++++ E++ IH P Sbjct: 186 LYSSGEVLKSQGLDSRGFRKILYLALERLKGGISEILPNEIVKRRNLIPREESYREIHFP 245 Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE----IGIPINVEGKIAQKILRN 268 D A+ RL Y+EL LL+ K+ ++E + P+ + + A + +N Sbjct: 246 ---TDEVSLDAAKYRLKYEELFY--FNLLIEHKKREREKIKRVLWPLP-KSETADSVRKN 299 Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 + F T+ Q SA++ I + + + +LQGDVGSGKTLV+L+ ++ Q ++A Sbjct: 300 LLFQLTEDQSSALRKIEELTKRDQPIAVLLQGDVGSGKTLVSLLTALRYMDNQIQVCMVA 359 Query: 329 PIGILAQQHYEFIKKYTQNTQII-VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILA+QHY+ I + N + +E++ G P+ +R + L RI G +IGTH++FQ Sbjct: 360 PTEILARQHYQTILSFLGNMPFLGIELLVGKEPKKNRYEKLYRIKKGDTLFVIGTHSVFQ 419 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + + + +L LVI+DEQH+FGV QR L K P +L MTATPIPRTL LT GD+D+ Sbjct: 420 EDVLFSELGLVIIDEQHKFGVDQRETLRSKGKNPDILAMTATPIPRTLCLTLYGDLDLLT 479 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 I KP GR PI+T NR + V + ++ +S G++ Y + P +EE ++ + +S + + Sbjct: 480 IKSKPKGRMPIQTKWFQENRREGVYKSIRKYVSSGRQCYIVYPLVEESEKVDLKSCIAAY 539 Query: 508 NSL-HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 L HE F+ ++ ++HG+M +K+ VM F ++L++TTVIEVGIDV +A++++I Sbjct: 540 EHLKHEIFSDFAVGLVHGKMETEEKDRVMQEFSKNRIQILVSTTVIEVGIDVPNATVMMI 599 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625 E+A+ FG++QLHQLRGRVGRG+E S CIL+ +++++ RL + N DGF ++E DL Sbjct: 600 EHADRFGISQLHQLRGRVGRGDEESFCILMTDSKVTEDAKVRLDAMVNFSDGFALSEIDL 659 Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671 + R GE++G++QSG+P F IA L+E+ R+DA IL +P Sbjct: 660 QLRGPGELMGVRQSGLPDFRIADLRKDSKLIELTREDA--ILFGNP 703 >gi|257462680|ref|ZP_05627089.1| ATP-dependent DNA helicase recG [Fusobacterium sp. D12] gi|317060328|ref|ZP_07924813.1| ATP-dependent DNA helicase recG [Fusobacterium sp. D12] gi|313686004|gb|EFS22839.1| ATP-dependent DNA helicase recG [Fusobacterium sp. D12] Length = 680 Score = 351 bits (901), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 217/606 (35%), Positives = 343/606 (56%), Gaps = 15/606 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEI-SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101 DLL+ P ++ +R I+E+ EE V + +++ +R K +DG+G I Sbjct: 30 DLLYSFPRAYDNRSNLKTIAELHQEEYAVLHAKLLHVYTTPTRSGKRMTKATASDGSGLI 89 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161 +L+F L+ + G +K+ M +P + Q + ++ +YS Sbjct: 90 EILWF--GMPYLQKSLKLQEEYIFIGTVKRSMGTFQMTNPEFKLSKGQKMQGEIL-PIYS 146 Query: 162 LPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220 LS + F+K + E LS L E I ++L QK +A IH P K E Sbjct: 147 THKNLSQNRFRKYMREVLSLTESSLAENIPEELCQKYKILERKQALWEIHFPSSEKTLE- 205 Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI---NVEGKIAQKILRNIPFSPTKSQ 277 A+ R A +ELL ++ +L R + P+ E + ++ L ++PF T++Q Sbjct: 206 --EAKRRFAIEELLIIEMGILKNRF-LTDSLASPLYHLKGEKTLVRQYLDSLPFPLTRAQ 262 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + I +I +D+ Q + R++QGDVGSGKT+VA+I + +E G Q MAP ILA QH Sbjct: 263 KKVITEIYKDLEQGRIVNRLVQGDVGSGKTIVAMILLLYMIENGYQGAFMAPTEILATQH 322 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y + + + VE++TG++ R + L + G+ ++IGTHAL ++ + +++L Sbjct: 323 YLGVSSKMKELGLRVELLTGSIRGKKRNELLTALGEGKIDLLIGTHALLEEEVSFHQLGF 382 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +++DEQHRFGV QR KL +K ++L+MTATPIPR+L L+ GD+D+S + E P GR P Sbjct: 383 IVIDEQHRFGVLQRQKLREKGILTNLLVMTATPIPRSLALSIYGDLDVSILDELPPGRSP 442 Query: 458 IKTVIIPI-NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 IKT I ++++ ++ L +G++AY++ P IEE + S++E + E + Sbjct: 443 IKTKWIASEEEMEKMYSFIRKQLQQGRQAYFVAPLIEESDKLVLHSILEVEKKIREKLSD 502 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 +I+I+HGRM +KE +M F+ +L++TTVIEVGIDV +A I+ I NAE FGL+ Sbjct: 503 YNISILHGRMKSAEKEEIMRQFQQKEIDILVSTTVIEVGIDVPNAVIMTILNAERFGLSA 562 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG S C L+ +++S RL +++ T+DGF+IAEEDLK R GEI G Sbjct: 563 LHQLRGRVGRGNSASFCFLISKTQ-NESSKQRLKIMEATQDGFVIAEEDLKMRNAGEIFG 621 Query: 636 IKQSGM 641 ++QSG+ Sbjct: 622 LRQSGL 627 >gi|89255931|ref|YP_513293.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp. holarctica LVS] gi|115314413|ref|YP_763136.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp. holarctica OSU18] gi|156501920|ref|YP_001427985.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009166|ref|ZP_02274097.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp. holarctica FSC200] gi|254367289|ref|ZP_04983316.1| ATP-dependent DNA helicase recG [Francisella tularensis subsp. holarctica 257] gi|290953712|ref|ZP_06558333.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp. holarctica URFT1] gi|295312947|ref|ZP_06803666.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp. holarctica URFT1] gi|89143762|emb|CAJ78964.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp. holarctica LVS] gi|115129312|gb|ABI82499.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp. holarctica OSU18] gi|134253106|gb|EBA52200.1| ATP-dependent DNA helicase recG [Francisella tularensis subsp. holarctica 257] gi|156252523|gb|ABU61029.1| ATP-dependent DNA helicase [Francisella tularensis subsp. holarctica FTNF002-00] Length = 679 Score = 351 bits (901), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 227/639 (35%), Positives = 362/639 (56%), Gaps = 22/639 (3%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75 F GVG+ L+K N + N DLL P + D I+ + + I G Sbjct: 6 FNGVGEATIKALAKY-NIHDPN-----DLLTIFPKDYKDTRVITPINHLVAGKRSLIQGR 59 Query: 76 ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 ++ + +++ ++ + +ND TG +++ F L + + + GK++ Sbjct: 60 VT-NLTYKKFGKKFLRFNINDNTGFCSVILFKFYPNQLA-ILEKSEYVRCYGKVE-FSLS 116 Query: 136 IIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLL 194 MVHP + N+ + AVY L + L K+I++ L V I LL Sbjct: 117 PQMVHPEWATVNNGECTLKHGFSAVYRLKK-IPDRLISKMILKMLQDNRV-ENIIPSQLL 174 Query: 195 QKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 ++ + S +A +H D ++ S AR + ++E+LA ++A + K K P Sbjct: 175 RRFNLISFCDALYYVHALTNFIDEKYLSIARFSIKFEEMLAYKLAEQNIYKNTVKAQA-P 233 Query: 255 INVEGKIAQ-KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313 KI Q + +P+ T +Q+ AI +IL D+ + N M R+LQGDVG+GKT+VA IA Sbjct: 234 QLFLTKIQQNEFYEKLPYQLTNAQQRAITEILDDIKKSNAMNRLLQGDVGAGKTIVATIA 293 Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373 AAV++G Q +MAP ILA+QH+ F+ +Y + I V + G + R++L++I Sbjct: 294 AYAAVKSGYQVAMMAPTEILAEQHFSFLSQYLASFDIKVIPLLGKLSAKQTRESLDKIKD 353 Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------PHVLLMT 427 + +++GTHA+FQ+ ++Y L LVIVDEQHRFGV+QRL L K+++ PH L+++ Sbjct: 354 QKDCVVVGTHAIFQERVEYCNLGLVIVDEQHRFGVEQRLALVSKSSSNFSDLTPHQLIIS 413 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T G++ +S + E P RKPI T ++ + +IE++K + G++ YW Sbjct: 414 ATPIPRTLAMTLYGNLKLSILDELPPKRKPIITTVLNRAKKQNLIEKVKQAVLRGEQVYW 473 Query: 488 ICPQIEEKKESNF-RSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545 +CP +EE + +F + V + L E ++ +++G M DK M +FK +L Sbjct: 474 VCPLVEESENMDFLQDVKTLYQELLEALGKENVGLVYGSMKSKDKIEQMAAFKAKKYAVL 533 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 +ATTVIEVG+DV +A+I+II+NAE G++QLHQLRGRVGRG + S CILLY +S+ Sbjct: 534 VATTVIEVGVDVPNATIMIIDNAERLGISQLHQLRGRVGRGAKESYCILLYSDKISEVGK 593 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644 RLS+++ ++DGF +AE+DL+ R G+ILG +QSG+ F Sbjct: 594 RRLSLVRESQDGFYLAEKDLEIRGAGDILGKEQSGVSTF 632 >gi|163840526|ref|YP_001624931.1| ATP-dependent DNA helicase [Renibacterium salmoninarum ATCC 33209] gi|162954002|gb|ABY23517.1| RecG [Renibacterium salmoninarum ATCC 33209] Length = 733 Score = 351 bits (901), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 230/707 (32%), Positives = 369/707 (52%), Gaps = 65/707 (9%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY---KILLND--- 96 DLL Y P +++R +IS + + VT+ + +S ++++R+ ++ D Sbjct: 33 DLLNYFPRRYLNRGELTQISSLPFDEEVTLIARVVSTNSRRMRQRKGTITDVVVTGDTST 92 Query: 97 GTGEITLLFF--YRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-- 152 G G + + FF +R L G + +GK+ + + +P Y+ ++ + Sbjct: 93 GAGSLKISFFNGWRAEREL----LPGARAMFSGKVGFFNRALTLTNPDYVLIDADGADEE 148 Query: 153 -----FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFN 207 P+ A LP+ + ++ +A+ L + + ++ Q++ F + EA+ Sbjct: 149 LARQPIPIYPATAKLPSWKIANAISALL-DAID-LSSFDDPVPEETAQREEFLPLPEAYR 206 Query: 208 IIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ--FKKEIGIPINVEGKIAQKI 265 +IH P + ++ AR+R Y E L Q AL R Q ++ P + G +A Sbjct: 207 MIHRPTEPTQWKL---ARDRFRYQEALVLQTALARRRAQSAAQQTQSRPGSSTGLLA-SF 262 Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 ++PF+ T Q +++ +++ + M R+LQG+VGSGKTLVAL AM +++GGQA Sbjct: 263 DASLPFTLTNGQREIGEELSAELAGNSPMHRLLQGEVGSGKTLVALRAMLQVIDSGGQAA 322 Query: 326 IMAPIGILAQQHYEFIKK-----------YTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 ++AP +LA QH++ I+ + ++TG MP A ++KAL A G Sbjct: 323 LLAPTEVLAAQHFQSIRATLGPLAEGGMLGGFDGGTQAALLTGTMPAAVKKKALLDAASG 382 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPR 433 QA I+IGTHAL D +Q++ L L++VDEQHRFGV+QR L KA PH+L+MTATPIPR Sbjct: 383 QAGIVIGTHALLSDQVQFFDLGLIVVDEQHRFGVEQRDALRLKAIHPPHLLVMTATPIPR 442 Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWIC 489 T+ +T GD++ S + E PAGR PI T ++ + + +R + + G + Y +C Sbjct: 443 TVAMTVFGDLETSVLRELPAGRAPISTFVVGLAENPAWFSRLWQRSREEIDAGHQVYVVC 502 Query: 490 PQIEE---------------------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528 P+I E K ++ VVE S I +HGR+ Sbjct: 503 PRIGEAEGAEPPSGDEPDRLPSEDDAKAMASVLEVVEELRSEPSLAGCRIEALHGRLDPT 562 Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588 K VM F G ++L++TTV+EVG+DV +A+++II +A+ FG++QLHQLRGRVGRG Sbjct: 563 QKSQVMADFAAGGVQVLVSTTVVEVGVDVHNATLMIILDADRFGISQLHQLRGRVGRGGL 622 Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IA 647 + +L+ S RL + T DGF +++EDLK R+EG+ILG QSG L + Sbjct: 623 PGTALLVTELAPEHPSRRRLDAVAATTDGFALSQEDLKLRREGDILGASQSGGRSTLRLL 682 Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694 + H+S++E+AR DA I+ DP+L+ I L EAF Sbjct: 683 RVLEHESVIELARSDANKIIADDPELSKHSALEAAIEASLNPEREAF 729 >gi|56708621|ref|YP_170517.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp. tularensis SCHU S4] gi|110671092|ref|YP_667649.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp. tularensis FSC198] gi|224457814|ref|ZP_03666287.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp. tularensis MA00-2987] gi|254371254|ref|ZP_04987256.1| ATP-dependent DNA helicase [Francisella tularensis subsp. tularensis FSC033] gi|254875485|ref|ZP_05248195.1| recG, ATP-dependent DNA helicase [Francisella tularensis subsp. tularensis MA00-2987] gi|56605113|emb|CAG46234.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp. tularensis SCHU S4] gi|110321425|emb|CAL09617.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp. tularensis FSC198] gi|151569494|gb|EDN35148.1| ATP-dependent DNA helicase [Francisella tularensis subsp. tularensis FSC033] gi|254841484|gb|EET19920.1| recG, ATP-dependent DNA helicase [Francisella tularensis subsp. tularensis MA00-2987] gi|282159858|gb|ADA79249.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp. tularensis NE061598] Length = 679 Score = 351 bits (901), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 227/639 (35%), Positives = 362/639 (56%), Gaps = 22/639 (3%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75 F GVG+ L+K N + N DLL P + D I+ + + I G Sbjct: 6 FNGVGEATIKALAKY-NIHDPN-----DLLTIFPKDYKDTRVITPINHLVAGKRSLIQGR 59 Query: 76 ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 ++ + +++ ++ + +ND TG +++ F L + + + GK++ Sbjct: 60 VT-NLTYKKFGKKFLRFNINDNTGFCSVILFKFYPNQLA-ILEKSEYVRCYGKVE-FSLS 116 Query: 136 IIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLL 194 MVHP + N+ + AVY L + L K+I++ L V I LL Sbjct: 117 PQMVHPEWATVNNGECALKQGFSAVYRLKK-IPDRLISKMILKMLQDNRV-ENIIPSQLL 174 Query: 195 QKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254 ++ + S +A +H D ++ S AR + ++E+LA ++A + K K P Sbjct: 175 RRFNLISFCDALYYVHALTNFIDEKYLSIARFSIKFEEMLAYKLAEQNIYKNTVKAQA-P 233 Query: 255 INVEGKIAQ-KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313 KI Q + +P+ T +Q+ AI +IL D+ + N M R+LQGDVG+GKT+VA IA Sbjct: 234 QLFLTKIQQNEFYEKLPYQLTNAQQRAITEILDDIKKSNAMNRLLQGDVGAGKTIVATIA 293 Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373 AAV++G Q +MAP ILA+QH+ F+ +Y + I V + G + R++L+RI Sbjct: 294 AYAAVKSGYQVAMMAPTEILAEQHFSFLSQYLASFDIKVIPLLGKLSAKQTRESLDRIKD 353 Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------PHVLLMT 427 + +++GTHA+FQ+ ++Y L LVIVDEQHRFGV+QRL L K+++ PH L+++ Sbjct: 354 QKDCVVVGTHAIFQERVEYCNLGLVIVDEQHRFGVEQRLALVSKSSSNFSDLTPHQLIIS 413 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T G++ +S + E P RKPI T ++ + +IE++K + G++ YW Sbjct: 414 ATPIPRTLAMTLYGNLKLSILDELPPKRKPIITTVLNRAKKQNLIEKVKQAVLRGEQVYW 473 Query: 488 ICPQIEEKKESNF-RSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545 +CP +EE + +F + V + L E ++ +++G M DK M +FK +L Sbjct: 474 VCPLVEESENMDFLQDVKTLYQELLEALGKENVGLVYGSMKSKDKIEQMAAFKAKKYAVL 533 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 +ATTVIEVG+DV +A+I+II+NAE G++QLHQLRGRVGRG + S CILLY +S+ Sbjct: 534 VATTVIEVGVDVPNATIMIIDNAERLGISQLHQLRGRVGRGAKESYCILLYSDKISEVGK 593 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644 RLS+++ ++DGF +AE+DL+ R G+I+G +QSG+ F Sbjct: 594 RRLSLVRESQDGFYLAEKDLEIRGAGDIIGKEQSGVSTF 632 >gi|291007073|ref|ZP_06565046.1| ATP-dependent DNA helicase RecG [Saccharopolyspora erythraea NRRL 2338] Length = 740 Score = 351 bits (901), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 229/729 (31%), Positives = 370/729 (50%), Gaps = 82/729 (11%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 +S R +G K + L ++ DLL ++P + +R I+ + + T+ Sbjct: 1 MSLERVLGAKTAKALESALDLSTVG-----DLLRHYPRRYAERGELTAIAGLEIDEHATV 55 Query: 73 TGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFF---YRKTEMLKNVFFEGRKITVTG 127 + + S ++ RR + + DG + FF +R+ E+L GR+ G Sbjct: 56 LAQVERVSKRSMKSRRGTIVEARITDGHRSLICTFFNQAWRERELLP-----GRRGMFAG 110 Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFP--------LIEAVYSLPTGLSVDLFKKIIVEAL 179 K+ +N++ + HP Y +D + + VY GL + + + L Sbjct: 111 KVTAYRNQLQLAHPEYQLFTGEDEDVSEAAEEFAGALIPVYPSAQGLPSWSIARCVRQVL 170 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 + + +L + + A IH PR DF + A+ERL +DE LA Q+A Sbjct: 171 DTWDGEDDPLPGELRTRLGLTGLEAALRKIHRPR---DFGEVTAAQERLKWDEALAVQLA 227 Query: 240 LLLMRKQFKKEIG--IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 L +R + P +G +A + +PF T Q +DI D++ ++ M R+ Sbjct: 228 LARLRGEAHAHPAPACPRRDDGILA-AFDKRLPFELTGGQREIGEDIAADLAVEHPMNRL 286 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII------ 351 +QG+VGSGKT+VAL AM V++G QA ++AP +LA QH + + + Sbjct: 287 VQGEVGSGKTVVALRAMLQVVDSGRQAAMLAPTEVLAAQHARSLAELLGELGMAGELGGA 346 Query: 352 -----VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 V ++TG MP A RRKAL A G+A I++GTHA+ QD + + L LV+VDEQHRF Sbjct: 347 EQATRVTLLTGTMPAAQRRKALLEAASGEAGIVVGTHAIIQDRVSFADLGLVVVDEQHRF 406 Query: 407 GVQQRLKLTQKA---TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463 GV+QR L + +PHVL+MTATPIPRT+ +T GD++ S + E P GR PI T ++ Sbjct: 407 GVEQRDALRARGGDEVSPHVLVMTATPIPRTVAMTVYGDLETSALRELPIGRSPISTNVV 466 Query: 464 PI----NRIDEVIERLKVVLSEGKKAYWICPQIEE-------KKESNFRSVVERFNSLHE 512 P+ + +D V +R+ ++ G + Y +CP+I + K++S+ S V+ + E Sbjct: 467 PVAEKPSWLDRVWQRIHEEVAAGHQVYVVCPRIGDDEETEGKKRKSSRSSAVDDSDGADE 526 Query: 513 H---------------------------FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545 + + ++HGR+ DK++VM F G +L Sbjct: 527 PPPEDSGGQRRPPVAVLDVAEQLAAGPLASLRLGVLHGRLPADDKDAVMRGFAAGDIDVL 586 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 +ATTV+EVG++V +A++++I +A+ FG++QLHQLRGRVGRG C+L+ + Sbjct: 587 VATTVVEVGVNVPNATVMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVSEAMGGTTTR 646 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAK 664 RL + +T DGF +A DL+ R+EG+ILG QSG L L D ++ AR++A+ Sbjct: 647 ERLEAVASTTDGFELARLDLELRREGDILGAAQSGRKSGLKMLSLLRDEDVIAQARQEAE 706 Query: 665 HILTQDPDL 673 + +DP+L Sbjct: 707 SFVAEDPEL 715 >gi|330837736|ref|YP_004412377.1| ATP-dependent DNA helicase RecG [Spirochaeta coccoides DSM 17374] gi|329749639|gb|AEC02995.1| ATP-dependent DNA helicase RecG [Spirochaeta coccoides DSM 17374] Length = 699 Score = 351 bits (900), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 230/700 (32%), Positives = 364/700 (52%), Gaps = 35/700 (5%) Query: 5 FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64 F+ L P+++ GVGK L + G + D+L P S+ DR + + Sbjct: 2 FIRQLQEPIASLPGVGKSARLGYDAL---GIRTQG---DVLLLSPRSWEDRSIIVPLGSV 55 Query: 65 S----EERIVTITGYISQHSSF--QLQKRRPYKILLND----GTGEITLLFFYRKTEMLK 114 + E +V + S F + + +R K+++ D G G ++LL F R + L+ Sbjct: 56 ARNTGENTVVNTFVQVLSQSWFGGRTRGKRTLKVIVRDISGNGDGRLSLLCFGR--DFLE 113 Query: 115 NVFFEGRKITVTGK----IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDL 170 V GR V + + +L++ V P S F + +Y L LS + Sbjct: 114 KVLVTGRTFYVYAQAAYHMTELQSSQFEVIPMRD-DGSPPAEFGAVLPIYPLSGSLSQRI 172 Query: 171 FKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAY 230 ++ + L+ E + L+ + A + H P +D + AR+ LA+ Sbjct: 173 IRRDVAAVLAARSFDDE-LPPSLMDAYALLPTDRAIRMWHQPSSLEDVK---KARQTLAF 228 Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIA---QKILRNIPFSPTKSQESAIKDILQD 287 EL Q L+ R++ + + G+I ++ + +PFS T QE+ +K+I D Sbjct: 229 TELFYLQ---LVTRRRAVRTDSSTLKSPGEITGSEKRFISLLPFSLTADQETVLKEIRMD 285 Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347 + + M R+LQGDVGSGKTLVA I+ + GGQ MAP +LA+QH E + Sbjct: 286 LDSSSPMNRMLQGDVGSGKTLVAWISALHVLSHGGQVAFMAPTELLARQHAENAARLLAP 345 Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407 + + +TG++ R+ L+ + G +IIGTHALF +++ +L VI+DEQHRFG Sbjct: 346 AGVRLAFLTGSVKGKERKLILDNLKAGNIDVIIGTHALFSKEVEFRRLRFVIIDEQHRFG 405 Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467 V QRL L KA P VLLMTATPIPRTL LT GD+++S I P GR P+ T ++ Sbjct: 406 VGQRLALMDKAATPDVLLMTATPIPRTLALTVFGDLNVSTIHTMPPGRLPVITHLVSDAS 465 Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRM 525 + + + + + G + Y++ P+I++ S+ R V F L I A++H R+ Sbjct: 466 RERMYKAVGIEFFRGHQGYFVYPRIDDSGTSDIRDVTNMFEYLSTRVYPGIPSALLHSRI 525 Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585 + +K +++ F+ L++T+V+EVGID+ +A+ +++E+A+HFGL+ LHQLRGRVGR Sbjct: 526 PEQEKMDILERFRRKELMYLVSTSVVEVGIDIPEATCMVVEHADHFGLSALHQLRGRVGR 585 Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645 G S C L+Y PLS ++ RL VL+ + DGF IAE+DL R GE+ G +QSG + Sbjct: 586 GTLQSYCFLVYGEPLSDDARQRLLVLRESTDGFRIAEQDLLIRGPGEMTGTRQSGFLRLQ 645 Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685 A ++ +ARK+A +L DP S+ IR +L Sbjct: 646 FADLTTDVEIIVVARKEADAVLQADPAFLSLSHSVIRDVL 685 >gi|206602183|gb|EDZ38665.1| Putative ATP-dependent DNA helicase (RecG) [Leptospirillum sp. Group II '5-way CG'] Length = 713 Score = 351 bits (900), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 229/684 (33%), Positives = 372/684 (54%), Gaps = 38/684 (5%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L +PL +GKK + L A +DLL+ P + DR P I ++ + Sbjct: 8 LVSPLHVVPDIGKKRAEKLEL------AGYRTVLDLLYCFPFRYEDRRAAPSIRQLVTGK 61 Query: 69 IVTITGYISQHSSFQLQKRRPYKIL-----LNDGTGEITLLFFYRKTEMLKNV------F 117 +G++++ + + R +++ L DG+GE+ ++F ++ +LK + F Sbjct: 62 P---SGFVARVRDIRKKALRNFRVPVIEADLEDGSGEVRAVWFGQEY-LLKTLPPGSMGF 117 Query: 118 FEGR-KITVTGKIKKLKNRII-MVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKII 175 F G+ +I+ + L++ ++ + S VN I VY GLS F+K I Sbjct: 118 FYGKPEISAYDGLLTLRSPVVEKMDEEKKGQKSFHVN--RIVPVYHESHGLSSSFFRKTI 175 Query: 176 VEALSRL-----PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW----TSPARE 226 L+ L LP + L FP+I + P D + P R Sbjct: 176 GIVLTSLWGNGFEPLPHSVLTSLGIMGWFPAIV-GMHFPRTPPVEGDIDSLLLPEYPPRR 234 Query: 227 RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR-NIPFSPTKSQESAIKDIL 285 R ++EL + + +K+ + + A+ R ++P++ T++Q+ A ++I Sbjct: 235 RFIFEELFFLEFLMGFKKKEIRLSSRSRNRQTPESAETAFRESLPYALTEAQKRACREIA 294 Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345 DMS+ + M R+L GDVGSGKT+VA + + G Q+ +MAP +LAQQHY + Sbjct: 295 SDMSKPSPMNRLLLGDVGSGKTVVAAWGVYLSFCGGMQSALMAPTEVLAQQHYASLTSLL 354 Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405 + I ++T ++ ++ +R +E + G ++GTHAL QD++ + L ++VDEQH+ Sbjct: 355 KPHGIRTALLTQSVKKSEKRTLMEAVHRGDVDFVVGTHALIQDALVFSSLGYIVVDEQHK 414 Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465 FGV+QR L QK P VL+MTATPIPR+L L+ GD+D+S + E+P GR+P+KT I+ Sbjct: 415 FGVEQRKTLIQKGENPDVLVMTATPIPRSLALSYFGDLDLSVLDERPPGRQPVKTDIVAK 474 Query: 466 NRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHG 523 NR + E + L G++ + + P IEE +E N R F +L + + S + ++ G Sbjct: 475 NRRECFWDESVAPALDRGEQVFVVYPLIEESEEENIRDATSMFGTLSQKWPSVATGLLTG 534 Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583 +M +K +VM++F++G +LL++TTV+EVG+D+ A+++++ENAE FGLAQLHQLRGRV Sbjct: 535 KMPWEEKAAVMEAFRSGKIRLLVSTTVVEVGVDIPGATVMVVENAERFGLAQLHQLRGRV 594 Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643 GRG +C L+ P S+ S RL +L TEDGF +AEEDL+ R GE +G +QSG+P Sbjct: 595 GRGSLPGTCYLIPGPDASRESAGRLEILAQTEDGFQVAEEDLRLRGPGEFIGTRQSGLPM 654 Query: 644 FLIAQPELHDSLLEIARKDAKHIL 667 F +A +L +AR+ A L Sbjct: 655 FQVASLVRDVDILLLAREQASMFL 678 >gi|311740524|ref|ZP_07714351.1| DNA helicase RecG [Corynebacterium pseudogenitalium ATCC 33035] gi|311304044|gb|EFQ80120.1| DNA helicase RecG [Corynebacterium pseudogenitalium ATCC 33035] Length = 710 Score = 351 bits (900), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 232/684 (33%), Positives = 372/684 (54%), Gaps = 78/684 (11%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 +LL ++P +I + + + +E IVT+TG I+ + K + L+ G I Sbjct: 33 ELLAHYPRDYIRHNKDVGLGDAAEGDIVTVTGTITGFTRHDSGKTTIINVQLD---GSIV 89 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS--------QDVNFP 154 FF + + + G+++ ++GK+K +N+ + P ++ ++ D P Sbjct: 90 ATFF--NANYVMRMLYRGQRVMMSGKLKFFRNQPQLQQPDFVEIDAFGRPDGELDDYRQP 147 Query: 155 LIEA--------------------------------VYSLPTGLSVDLFKKIIVEALSRL 182 E+ VY + ++ I LS+ Sbjct: 148 AAESGKKHRPKATGSLRNLSQFGRLDQLLLEREWIPVYPATSKVTSWYIMGAIHYVLSKT 207 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 P + E ++ ++ S+ +A IH P +A + A +RL Y+E L+ I L++ Sbjct: 208 PPIEEPLDYQMI-----ISLDKAVREIHEPGEAGPYR----AIQRLKYNEALS--IGLVM 256 Query: 243 MRKQFKKEI----GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 +Q E +P + G +++L ++PF T+ Q I +I D+++ M+R+L Sbjct: 257 ALRQRDAEARTASTMPATL-GGYREELLSHLPFDLTEGQRRVISEIEDDLARPLPMMRLL 315 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QG+VGSGKT+VA AM AV+AG QA ++AP +LA QH I +V ++TG+ Sbjct: 316 QGEVGSGKTMVATCAMLQAVDAGTQAALLAPTEVLASQHAASIGTSVPEGVKVV-LLTGS 374 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 M A +R+AL I G A I+IGTHA+ QDS++++ L LV+VDEQHRFGV+QR L KA Sbjct: 375 MRTADKRQALLDIVSGDADIVIGTHAIIQDSVEFFNLGLVVVDEQHRFGVEQRDSLRLKA 434 Query: 419 T---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVI 472 +PHVL+MTATPIPRT+ +T GD+ +S +TE P GRKPI++ ++ R + + Sbjct: 435 REGLSPHVLVMTATPIPRTIAMTVFGDLAVSTLTELPGGRKPIQSAVVAEWRPTWVLRAL 494 Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH-FTS-SIAIIHGRMSDIDK 530 ER++ ++ G +AY +CP+IE K V+E L F +AI+HG+M + K Sbjct: 495 ERIREEVAHGHQAYIVCPRIEGKG-----GVLELAQQLENGPFKGLRVAILHGKMPN--K 547 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 + VM SF G +L++TTVIEVG+DV +A++++I +EHFG++QLHQLRGRVGRG S Sbjct: 548 DEVMTSFARGEIDILVSTTVIEVGVDVPNATVMLIRESEHFGVSQLHQLRGRVGRGGNAS 607 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 C+L + S+ R++ + T GF +AE DL+QR+EG+ILG QSG + L Sbjct: 608 VCLLHTTAADNTPSFRRITQIAQTSSGFELAELDLRQRQEGDILGTMQSGTHRTLRLLNL 667 Query: 651 LHD-SLLEIARKDAKHILTQDPDL 673 D ++E DA+ ++ ++P+L Sbjct: 668 ADDQDIVERTHTDARAMVMRNPEL 691 >gi|300771630|ref|ZP_07081505.1| DNA helicase RecG [Sphingobacterium spiritivorum ATCC 33861] gi|300761619|gb|EFK58440.1| DNA helicase RecG [Sphingobacterium spiritivorum ATCC 33861] Length = 701 Score = 350 bits (899), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 247/709 (34%), Positives = 371/709 (52%), Gaps = 52/709 (7%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L P+ +GVG + + L K + DLL Y+P +IDR KI ++ + Sbjct: 6 LITPIEYLKGVGPQKADILKKELQVFTIG-----DLLEYYPFRYIDRTQFHKIHKLHPDM 60 Query: 69 I-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 I + G + ++ R D +G I L++F + LK G + G Sbjct: 61 IGAQVLGRLVGLQEVGEKRGRRLVGQFRDDSGSIELVWF-QSIPWLKKSLKIGSPYILYG 119 Query: 128 KIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGL--------SVDLFKKIIVE 177 K + I + HP +N+Q+ + ++ VYS L + ++ +E Sbjct: 120 KPTEFNGHISITHPEMELYNAQEQKIGNQSLQPVYSSTEKLKKFNLDTRGIQRLQQTALE 179 Query: 178 ALSR-----LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232 + R LPV L+Q+ +A IH P+ ++ + A RL ++E Sbjct: 180 TVYRSIGDMLPVY-------LIQEHRLIEYPKALLAIHFPKSQQELDQ---AIRRLKFEE 229 Query: 233 LLAGQIALL----LMRKQFK----KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284 L Q+ LL L +FK ++G +N +PF T +Q+ IK+I Sbjct: 230 LFFIQLRLLNNKQLNTLKFKGHRFDQVGEKVNT------FFNEKLPFPLTNAQKRVIKEI 283 Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344 QD + +M R++QGDVGSGKT+VAL++M A++ G QA +MAP ILA QHY + + Sbjct: 284 RQDTNTGAQMNRLVQGDVGSGKTVVALMSMLLAIDNGFQACMMAPTEILATQHYASVSEL 343 Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404 V ++TG+ P RR + + G I+IGTHAL +D +++ + V++DEQH Sbjct: 344 LGEGFAKVRLLTGSTPAKERRIIHQELEEGTLDILIGTHALIEDKVRFKNIGFVVIDEQH 403 Query: 405 RFGVQQRLKLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463 RFGV+QR KL +K PH+L+MTATPIPRTL +T GD+DIS I E PAGRKPIKTV Sbjct: 404 RFGVEQRAKLWRKNVIPPHMLVMTATPIPRTLAMTMYGDLDISVIDELPAGRKPIKTVHF 463 Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAI 520 + + +K +++G++ Y + P I+E ++ + + +L F I+I Sbjct: 464 FESSRLRMFGFMKEEIAKGRQVYVVFPLIKESEKLDLLYLEAGLENLQREFPLPQYKISI 523 Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580 +HG+M DK+ M F ++++ATTVIEVG++V +AS+++IEN+E FGL+QLHQLR Sbjct: 524 VHGKMPVKDKDFEMQRFIKHETQIMVATTVIEVGVNVPNASVMVIENSERFGLSQLHQLR 583 Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 GRVGRG E S CIL+ LSK RL + T DGF IAE DL+ R G+I G +QSG Sbjct: 584 GRVGRGAEQSFCILMSGNKLSKEGRLRLETMVRTNDGFEIAEVDLQLRGPGDISGTQQSG 643 Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQ 689 + IA ++L AR I +DP L S + +I + YL Q Sbjct: 644 VLDMKIANLASDQAILSEARNAVISIFKEDPALQSEK--NILLSAYLKQ 690 >gi|227535922|ref|ZP_03965971.1| DNA helicase RecG [Sphingobacterium spiritivorum ATCC 33300] gi|227244165|gb|EEI94180.1| DNA helicase RecG [Sphingobacterium spiritivorum ATCC 33300] Length = 701 Score = 350 bits (899), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 242/690 (35%), Positives = 364/690 (52%), Gaps = 44/690 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L P+ +GVG + + L K + DLL Y+P +IDR KI ++ + Sbjct: 6 LITPIEYLKGVGPQKADILKKELQVFTIG-----DLLEYYPFRYIDRTQFHKIHKLHPDM 60 Query: 69 I-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 I + G + ++ R D TG I L++F + LK G + G Sbjct: 61 IGAQVLGRLIGLQEVGEKRGRRLVGQFRDDTGSIELVWF-QSIPWLKKSLKIGSPYILYG 119 Query: 128 KIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGL--------SVDLFKKIIVE 177 K + I + HP +N+Q+ + ++ VYS L + ++ +E Sbjct: 120 KPTEFNGHISITHPEMELYNAQEQKIGNQSLQPVYSSTEKLKKFNLDTRGIQRLQQTALE 179 Query: 178 ALSRL--PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235 + R +LP + L+Q+ +A IH P+ ++ + A RL ++EL Sbjct: 180 TVYRSIGDMLPPY----LIQEHRLIDYPKALLAIHFPKSQQELDQ---AIRRLKFEELFF 232 Query: 236 GQIALL----LMRKQFK----KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287 Q+ LL L +FK ++G +N +PF T +Q+ IK+I QD Sbjct: 233 IQLRLLNNKQLNTLKFKGHRFDQVGEKVNT------FFNEKLPFPLTNAQKRVIKEIRQD 286 Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347 + +M R++QGDVGSGKT+VAL++M A++ G QA +MAP ILA QHY + + Sbjct: 287 TNTGAQMNRLVQGDVGSGKTVVALMSMLLAIDNGFQACMMAPTEILATQHYASVSELLGE 346 Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407 V ++TG+ P RR + + G I+IGTHAL +D +++ + V++DEQHRFG Sbjct: 347 GFAKVRLLTGSTPAKERRIIHQELEEGTLDILIGTHALIEDKVRFKNIGFVVIDEQHRFG 406 Query: 408 VQQRLKLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466 V+QR KL +K PH+L+MTATPIPRTL +T GD+DIS I E PAGRKPIKTV + Sbjct: 407 VEQRAKLWRKNVIPPHMLVMTATPIPRTLAMTMYGDLDISVIDELPAGRKPIKTVHFFES 466 Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHG 523 + +K +++G++ Y + P I+E ++ + + +L F I+I+HG Sbjct: 467 SRLRMFGFMKEEIAKGRQVYVVFPLIKESEKLDLLYLEAGLENLQREFPLPQYKISIVHG 526 Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583 +M DK+ M F ++++ATTVIEVG++V +AS+++IEN+E FGL+QLHQLRGRV Sbjct: 527 KMPVKDKDFEMQRFIKHETQIMVATTVIEVGVNVPNASVMVIENSERFGLSQLHQLRGRV 586 Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643 GRG E S CIL+ LSK RL + T DGF IAE DL+ R G+I G +QSG+ Sbjct: 587 GRGAEQSFCILMSGNKLSKEGRLRLETMVRTNDGFEIAEVDLQLRGPGDISGTQQSGVLD 646 Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDL 673 IA ++L AR I +DP L Sbjct: 647 MKIANLASDQAILSEARNTVISIFKEDPAL 676 >gi|325474706|gb|EGC77892.1| ATP-dependent DNA helicase RecG [Treponema denticola F0402] Length = 678 Score = 350 bits (899), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 227/689 (32%), Positives = 363/689 (52%), Gaps = 51/689 (7%) Query: 11 APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70 PL+ GVG + +S++ G N DLL P + DR + + ++ + + Sbjct: 8 GPLTNIAGVG---AAAVSQLKRLGVENAG---DLLRLFPRDWEDRSKINVLLDWNKFQKI 61 Query: 71 TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 + ++ H F K + K+++ D G L + + L+ F G + V G Sbjct: 62 HVEVTVAGHEWFGFGKMKTLKLIVADKNGMTASLICFNRP-FLEKSFPVGARAFVYGSFY 120 Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190 + I + +++ ++ VY L +GL +KII AL + + I+ Sbjct: 121 RKYGEI--QSSAFDLEKPENMQSKIL-PVYPLTSGLGQAKLRKIIASALK---MYGQGID 174 Query: 191 KDL----LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL---- 242 +L L+K P E ++H P+ + E R L ++E Q A+ + Sbjct: 175 SELPDSILKKYGLPPKQEVLFMLHAPKSMAEVE---KGRYALIFEEFFLFQYAIGMRSIE 231 Query: 243 -------------MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289 + K FKKE V + +L + F T+ Q S +I +D+ Sbjct: 232 RRGRLPNLEDESNIGKTFKKE-----PVLTPLQSSLLERLNFKLTQDQLSVCAEINEDLD 286 Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349 N M R++QGDVGSGKTLVA +A +E GGQ +AP +LA+QH E + + Sbjct: 287 GPNPMARLMQGDVGSGKTLVAFLACLKVIEQGGQTAFLAPTELLARQHAENAARLLEPLG 346 Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409 + + +TGN R + L+ + G +IIGTH+LF +QY L L ++DEQHRFGV Sbjct: 347 VRLAFLTGNTKAKGRSRLLQELQKGNIDLIIGTHSLFSQGVQYKNLRLAVIDEQHRFGVL 406 Query: 410 QRLKLTQKAT-------APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462 QR + QK +PH+L+M+ATPIPRTL L+ GD+DIS I P GRKPI T + Sbjct: 407 QRSAIIQKGAESNEEKKSPHLLMMSATPIPRTLALSIFGDLDISTIKTMPPGRKPIITYV 466 Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAII 521 ++ + V + + +G++AY++ P IEE ++ + +S F L F + S+A+I Sbjct: 467 AGEDKAERVYNFIGQEILQGRQAYFVYPLIEENEDLSLKSAERMFEELKTGFPNHSLALI 526 Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581 H ++++ +++ +M F++G +L+AT+V+EVG+DV +A+ ++IE+A+ FGL+ LHQLRG Sbjct: 527 HSKVAEEEQKRIMQEFRSGKLNILVATSVVEVGVDVPNATCMVIEHADRFGLSALHQLRG 586 Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641 RVGRG+ S C L+Y ++++ RL+V+K T DGF+IAEEDL+ R G+I G++QSG Sbjct: 587 RVGRGDLQSYCFLIYGKKITEDGRARLTVMKETNDGFIIAEEDLRLRGPGDIGGVEQSGY 646 Query: 642 P-KFLIAQPELHDSLLEIARKDAKHILTQ 669 F IA P +L+ AR A +L Q Sbjct: 647 HLGFTIADPARDFKILQEARSAAFELLEQ 675 >gi|328676417|gb|AEB27287.1| ATP-dependent DNA helicase RecG [Francisella cf. novicida Fx1] Length = 679 Score = 350 bits (899), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 219/612 (35%), Positives = 351/612 (57%), Gaps = 16/612 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLL P + D I+ + + I G ++ + +++ ++ + +ND TG + Sbjct: 27 DLLTIFPKVYKDTRVITPINHLVAGKRSLIQGRVT-NLTYKKFGKKFLRFNINDNTGFCS 85 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYS 161 ++ F L + + + GK++ MVHP + N+ + AVY Sbjct: 86 VILFKFYPNQLA-ILEKSEYVRCYGKVE-FSLSPQMVHPEWATVNNGECTLKQGFSAVYR 143 Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221 L + L K+I++ L V I LL++ + S +A +H D ++ Sbjct: 144 LKK-IPDRLISKMILKMLQDNRV-ENIIPSQLLRRFNLISFCDALYYVHALTNFIDEKYL 201 Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQ-KILRNIPFSPTKSQESA 280 S AR + ++E+LA ++A + K K P KI Q + +P+ T +Q+ A Sbjct: 202 SIARFSIKFEEMLAYKLAEQNIYKNTVKAQA-PQLFLTKIQQNEFYEKLPYQLTNAQQRA 260 Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340 I +IL D+ + N M R+LQGDVG+GKT+VA IA AAV++G Q +MAP ILA+QH+ F Sbjct: 261 ITEILDDIKKSNAMNRLLQGDVGAGKTIVATIAAYAAVKSGYQVAMMAPTEILAEQHFSF 320 Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400 + +Y + I V + G + R++L++I + +++GTHA+FQ+ ++Y L LVIV Sbjct: 321 LSQYLASFDIKVIPLLGKLSAKQTRESLDKIKDQKDCVVVGTHAIFQERVEYCNLGLVIV 380 Query: 401 DEQHRFGVQQRLKLTQKATA------PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454 DEQHRFGV+QRL L K+++ PH L+++ATPIPRTL +T G++ +S + E P Sbjct: 381 DEQHRFGVEQRLALVSKSSSNFSDLTPHQLIISATPIPRTLAMTLYGNLKLSILDELPPK 440 Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-RSVVERFNSLHEH 513 RKPI T ++ + +IE++K + G++ YW+CP +EE + +F + V + L E Sbjct: 441 RKPIITTVLNRAKKQNLIEKVKQAVLRGEQVYWVCPLVEESENMDFLQDVKTLYQELLEA 500 Query: 514 F-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 ++ +++G M DK M +FK +L+ATTVIEVG+DV +A+I+II+NAE G Sbjct: 501 LGKENVGLVYGSMKSKDKIEQMAAFKAKKYAVLVATTVIEVGVDVPNATIMIIDNAERLG 560 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 ++QLHQLRGRVGRG + S CILLY +S+ RLS+++ ++DGF +AE+DL+ R G+ Sbjct: 561 ISQLHQLRGRVGRGAKESYCILLYSDKISEVGKRRLSLVRESQDGFYLAEKDLEIRGAGD 620 Query: 633 ILGIKQSGMPKF 644 ILG +QSG+ F Sbjct: 621 ILGKEQSGVSTF 632 >gi|269127644|ref|YP_003301014.1| ATP-dependent DNA helicase RecG [Thermomonospora curvata DSM 43183] gi|268312602|gb|ACY98976.1| ATP-dependent DNA helicase RecG [Thermomonospora curvata DSM 43183] Length = 736 Score = 350 bits (899), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 224/705 (31%), Positives = 360/705 (51%), Gaps = 56/705 (7%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY--KILLNDGTGE 100 DL+ ++P + R + + + VT+ +++ + + Y ++ ++DG G Sbjct: 31 DLVHHYPRRYAQRGELTDLDGLVDGEHVTVMAEVTKVQGRTIPRSPGYLLEVTVSDGHGT 90 Query: 101 ITLLFFYRKTEM-LKNVFFEGRKITVTGKIKKLKNRII------MVHPHY-IFHNSQDVN 152 + L FF RK + G + +GK+ + R + HP + + Sbjct: 91 LKLTFFGRKGAWRAEKELSPGVRGLFSGKVTTYRPRGGGRPQRQLTHPEFRVLPEEGSAG 150 Query: 153 FPLIE------AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206 E +Y GL ++ + L +L + P+ + +L++ + EA Sbjct: 151 AAAREFAEEIIPIYPATKGLESWKIEECVQIVLDQLDLGPDPMPGPILRRHGLIGLGEAL 210 Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKI 265 IH PR + E AR RL +DE QIAL RK P V G + Sbjct: 211 RGIHKPRDWGELER---ARRRLKWDEAFVLQIALAQRRKAASALPAKPRPRVRGGLLDAF 267 Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 +PF+ T+ Q ++I D+S ++ M R+LQGDVG+GKT+VAL AM V+ GGQA Sbjct: 268 DAALPFTLTEGQLQVGEEIAADLSGEHPMHRLLQGDVGAGKTVVALRAMLQVVDGGGQAA 327 Query: 326 IMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIAHG 374 ++AP +LAQQHY I + V ++TG+ RR+AL A G Sbjct: 328 LLAPTEVLAQQHYRSITAMLGPLAEAGRLGGADKATRVVLLTGSQGAKARRQALLEAASG 387 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIP 432 +A I++GTHAL Q+ +Q+ L LV+VDEQHRFGV+QR L +KA PHVL+MTATPIP Sbjct: 388 EAGIVVGTHALLQEHVQFADLGLVVVDEQHRFGVEQRDALREKAAGGRPHVLVMTATPIP 447 Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWIC 489 RT+ +T GD++ S +++ P+GR IKT ++P R + ER++ +++G++AY +C Sbjct: 448 RTVAMTVFGDLETSTLSQLPSGRAEIKTFVVPPERPAFLARTWERIREEVAQGRQAYIVC 507 Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAI-------------------IHGRMSDIDK 530 P+I +++ + E + +A+ +HG++ DK Sbjct: 508 PRIGAQEDEEDDAPTPPPGPDEEGRRAPVAVLDLLPRLEEELLTGLRIGVLHGKLPPDDK 567 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 ++VM F G +L+ATTV+EVG+DV +A++++I +A+ FG++QLHQLRGRVGRG Sbjct: 568 DAVMRRFAAGEIDVLLATTVVEVGVDVPNATVMVIMDADRFGVSQLHQLRGRVGRGSLPG 627 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 C+L+ + RL + +T DGF ++ DL+QR+EG++LG Q+G L Sbjct: 628 LCLLVTDAEPGSRARQRLDAVASTTDGFALSRLDLEQRREGDVLGAAQAGRHSSLRLLTL 687 Query: 651 LHD-SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694 L D L+ AR +A ++ DPDL + + + L + F Sbjct: 688 LKDEELIRTARTEATALVEADPDLQGHAALAAELAVMLDEERAGF 732 >gi|299139590|ref|ZP_07032764.1| ATP-dependent DNA helicase RecG [Acidobacterium sp. MP5ACTX8] gi|298598518|gb|EFI54682.1| ATP-dependent DNA helicase RecG [Acidobacterium sp. MP5ACTX8] Length = 818 Score = 350 bits (898), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 208/551 (37%), Positives = 296/551 (53%), Gaps = 64/551 (11%) Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLL 242 E + + L Q+ P EA +H P +PA RL ++E ++ L L Sbjct: 243 ETLPQALRQRLGLPGRMEALQALHFPPAGTPITELMSARTPAHRRLIFEEFWYLELGLEL 302 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 R++ + G + K+ + + + +PF PT +Q+ + +I+ DM M R+LQGDV Sbjct: 303 KRRKLRTRAGTAFLTDEKVREALKQVLPFKPTSAQKRVLGEIVTDMRASRPMRRLLQGDV 362 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT-------QIIVEII 355 GSGKT+VAL A A+E G QA +MAP ILA QHY +K + V ++ Sbjct: 363 GSGKTIVALQAALVAIENGYQAAMMAPTEILATQHYLSARKLLADAISPHTGRPYRVALL 422 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 TG++ + +R RI G+ + IGTHAL ++ + + L LVIVDEQHRFGVQQR KL Sbjct: 423 TGSLDERAKRDVRGRIFRGETDLAIGTHALVEEKVDFENLGLVIVDEQHRFGVQQRFKLM 482 Query: 416 QK------ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469 +K AT P VL+MTATPIPRTL LT GD+++S I E P GR PI T +P R Sbjct: 483 RKPGANGVATEPDVLVMTATPIPRTLALTVYGDLEVSIIDELPPGRTPIVTRRMPEERSS 542 Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESN------------------------------ 499 EV ++ + G++AY + P IE +K+ Sbjct: 543 EVWNFVRKQIVAGRQAYIVYPVIEGEKDDQPELDFAQDSSESVSQQVSESAALPKKQKNG 602 Query: 500 --------------FRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543 RS E F+ L S + ++HGRMS DKE M FK G Sbjct: 603 KKASSARKSADRVKLRSATEMFDELSSGALSGMKLGLLHGRMSADDKEVTMARFKRGEID 662 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +LI+TTVIEVG+DV +A++++IE+AE FGLAQ+HQLRGRVGRG S C+LL +S Sbjct: 663 VLISTTVIEVGVDVPNATVMVIEHAERFGLAQMHQLRGRVGRGAAKSYCVLLTGSSVSPE 722 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 + RL + T++GF +AE DL+QR GE G +Q+G+P+F +A LE+A+ +A Sbjct: 723 AEQRLDAMVRTQNGFELAEFDLEQRGPGEFFGTRQTGLPEFHVASLARDREFLELAKSEA 782 Query: 664 KHIL-TQDPDL 673 H + DP++ Sbjct: 783 AHFVEAPDPNI 793 >gi|297588350|ref|ZP_06946993.1| DNA helicase RecG [Finegoldia magna ATCC 53516] gi|297573723|gb|EFH92444.1| DNA helicase RecG [Finegoldia magna ATCC 53516] Length = 678 Score = 350 bits (898), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 232/667 (34%), Positives = 356/667 (53%), Gaps = 28/667 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI-SEERIVT 71 LS +G+GKK L + + + N DLL Y P + +R I + EE V Sbjct: 3 LSEIKGIGKK-KLEVLNSMGIFDVN-----DLLNYFPYRYENRSIIKNIIDTRDEESCVI 56 Query: 72 ITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 +IS+ + L++ + D T +I++ +F ++N + GKI Sbjct: 57 KVKFISKPVTKYLRRNLNLTSAIAFDDTSKISVSWF--NQPFIRNQILPNTTYYLYGKIN 114 Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-----PVL 185 +++N+ + P I S +I +Y + G++ + K I A+ V+ Sbjct: 115 RVQNQFKISSP--ILSKSFGGKLGIIYPIYKVKKGVTNNDMIKFIDFAIKHCIDEIKNVI 172 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 P + K+ I N I N K D+ AR L +E++ Q+A+ M+ Sbjct: 173 PYSMIKNY-------DIENKRNAIKNIHKPVDYAQFKRARTALVLEEVIIMQLAMKSMKT 225 Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 ++ I + I ++++ F TK Q AIKDI DM+ + RM R++QGDVGSG Sbjct: 226 TLNEQNYIKFKTDESI-DIFIKSLKFELTKGQLEAIKDIESDMTSEKRMNRLVQGDVGSG 284 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA A+ + +G Q+ MAP ILA QHYE + + V ++ ++ ++ + Sbjct: 285 KTIVAEAAIFKSYSSGYQSAFMAPTDILATQHYESLSDDFSKFGLKVCLLKSDLTKSEKD 344 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 LE I G +I+GTHA+ QD +++ KL LVI DEQHRFGV QR K++ K P VL+ Sbjct: 345 SVLEGIKSGYFDVIVGTHAIIQDFVEFKKLGLVITDEQHRFGVGQRKKISDKGQNPDVLV 404 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL L+ GD+DIS I E P GRK I+T + + + ++ + G +A Sbjct: 405 MTATPIPRTLALSYYGDLDISTINEMPKGRKIIETYSVGFSYEKRIAAFIRKQVENGFQA 464 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCK 543 Y +CP IEE + + +V E +N L + S I ++HG+M +KE VM F +G K Sbjct: 465 YVVCPLIEESEALDLENVTELYNRLSSEYFSDINVGMLHGKMKSSEKEEVMKEFVDGKTK 524 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V A++I+I NAE FGL+QLHQLRGRVGR + S CIL+ + S Sbjct: 525 ILVSTTVIEVGVNVKKANVIVIYNAERFGLSQLHQLRGRVGRSSDQSYCILINNAH-SDE 583 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R++++ T GF ++++DL R G++LG +QSG+P IA E L+E A Sbjct: 584 QMERMNIMVKTNSGFELSQKDLMMRGSGDLLGTRQSGIPLLNIADLEKDYELIEKAAVIT 643 Query: 664 KHILTQD 670 +I T D Sbjct: 644 DYIYTND 650 >gi|32471209|ref|NP_864202.1| ATP-dependent DNA helicase RecG [Rhodopirellula baltica SH 1] gi|32396911|emb|CAD71879.1| ATP-dependent DNA helicase RecG [Rhodopirellula baltica SH 1] Length = 734 Score = 350 bits (898), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 223/677 (32%), Positives = 359/677 (53%), Gaps = 54/677 (7%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYK-----ILLNDG 97 D+LF P + K+++++E + T G I+ +L R P K I+ ND Sbjct: 44 DILFLFPRNHTFPPPPTKVADLAEGQPATFIGTITDA---ELVSRTPGKSIFAAIVEND- 99 Query: 98 TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQ--DVNFP 154 +G + ++FF + + + FE ++ ++G K R HP Y I + D + P Sbjct: 100 SGAVRIVFFNQPFRA-EQLTFE-TQVRISGAPKLAGLRWEFTHPQYEIVQEGELPDEDAP 157 Query: 155 --LIEAVYSLPTGLSVDLFKKIIVEALSRLP-----VLPEWIEKDLLQKKS--------- 198 LI A Y L G+ +++ ++ L VLPE + + Q+ + Sbjct: 158 GGLILANYPLTEGIKQSDLRRLARPLVNELAGQLTEVLPERLRTEAAQRLNAAGMELPDV 217 Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INV 257 P I++A IH P D + A+ RL + ELL Q+AL + R+ E+ P + Sbjct: 218 LPGISDALRGIHLPESEADL---TAAQTRLVFQELLVMQLALAMRRRSLTSELRAPSLEC 274 Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317 + +ILR PF T Q + I DM+++ M R+LQGDVGSGKT+VA+ AM A Sbjct: 275 TATVRNRILRRFPFELTGDQRRVMDVIAADMARQFPMNRLLQGDVGSGKTVVAIFAMLVA 334 Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377 V G QA +MAP +LA+QH+ +++ ++++ V ++ G++ A RR +E+I G+ Sbjct: 335 VAGGHQATLMAPTEVLARQHHATLQRMLADSRVRVGLLCGSLGAAERRGTVEKIRTGELD 394 Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437 I+IGT AL +++++L L ++DEQH+FGV+QR+ L PH L+M+ATPIPR++ + Sbjct: 395 IVIGTQALLY-GVEFHRLGLCVIDEQHKFGVKQRVTLRDGGVDPHYLVMSATPIPRSVAM 453 Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497 T GD+D+S + EKPAGR + T + + D +K ++EG++A+ + P++ + E Sbjct: 454 TQFGDVDLSTLREKPAGRGAVHTYLAGDSWRDRWWAFVKERVAEGRQAFVVAPRVGPEVE 513 Query: 498 SNFRSV----------VERFNSLHEHFTS---------SIAIIHGRMSDIDKESVMDSFK 538 S + E S+H + + ++HGRM+ +K+ VM+SF Sbjct: 514 SADEELSELVDPAEPPAEDITSVHSTYEQLRTGPLKGLRVGLLHGRMASDEKQQVMESFA 573 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G +L++TTVIEVGIDV +A+++ I FGLAQLHQLRGRV RG + Sbjct: 574 EGELDVLVSTTVIEVGIDVPNATVMAILGGNRFGLAQLHQLRGRVSRGTHAGHVCVFVDG 633 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 RL V + T DGF +AE D + R G++LG +QSG + IA +L++ Sbjct: 634 DKPPQDDERLKVFEQTLDGFELAEADFRLRGPGDVLGQRQSGDARLRIADLHRDVEILQV 693 Query: 659 ARKDAKHILTQDPDLTS 675 AR+ A+ + QDP++ S Sbjct: 694 AREMAQDWIDQDPEMES 710 >gi|320334950|ref|YP_004171661.1| ATP-dependent DNA helicase RecG [Deinococcus maricopensis DSM 21211] gi|319756239|gb|ADV67996.1| ATP-dependent DNA helicase RecG [Deinococcus maricopensis DSM 21211] Length = 779 Score = 350 bits (898), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 228/665 (34%), Positives = 359/665 (53%), Gaps = 39/665 (5%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYI-SQHSSFQLQKRRPYKILLNDGTGEI 101 DLL +P DR P + ++ + + VT++G + S++ K ++ L D G+ Sbjct: 129 DLLHAYPRRHEDRRALPNLVDVEDGQKVTVSGVVVSKNRRTPKPKMLILEVTLEDPYGQR 188 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL----IE 157 ++ + K + G ++ VTG+ K+ R + + Y F D L I Sbjct: 189 VKCTWFNQPWAEKQLSV-GSRLIVTGRAKRF-GRSVQIGAEY-FEREDDAEGSLSTARIV 245 Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 VY G+S D +K AL+ +P L +++ ++ +A+A +H P D Sbjct: 246 GVYEAQEGVSQDFLRKAAHTALTSVP-LDDYLPGAWRRQYGLTDLADALWGMHFP---TD 301 Query: 218 FEWTSPARERLAYDELLA--------GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269 + + ARERL +DE L G+ +LL ++ +G+ ++ ++ Sbjct: 302 EDHLTRARERLRFDEYLFLELRLLLQGEDGVLLGKRFL---------ADGRDIERFEGSL 352 Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T +Q + ++ DM + +M R++QGDVGSGKT VA A+ AV G Q +MAP Sbjct: 353 PFQFTGAQRRVLHEVADDMRSEKQMARLVQGDVGSGKTAVAACALYLAVRDGYQGALMAP 412 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILA+QH++ + Y + + V ++ G M + + IA+G +++GT AL Q+S Sbjct: 413 TEILARQHFKNLAGYLEPLGVRVGLLIGAMTPKQKAEMQATIANGLIDVVVGTQALIQES 472 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +++ L L ++DE+HRFGV QR KL A P VL+M+ATPIPR+L LT+ GD+++S I Sbjct: 473 VRWANLGLAVIDEEHRFGVLQRRKLL--ADRPDVLVMSATPIPRSLALTAYGDLELSVID 530 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 E P GR PI+T +I + + + EG++AY + IEE + + + + Sbjct: 531 ELPPGRTPIETKLIQDTHRRQAYGFVMRQIREGRQAYVVTSLIEENENLELLAATQLADD 590 Query: 510 LHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 L + I ++HG+MS +K+ VMD F+ +L++TTVIEVG+DV +A++++IENA Sbjct: 591 LKVILPDARIDLLHGKMSAAEKDEVMDRFRRREFDVLVSTTVIEVGVDVPNATVMVIENA 650 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628 E FGL+QLHQLRGRVGRG S C+L+ S+ + RL +++ + DGF+IAE DLK R Sbjct: 651 ERFGLSQLHQLRGRVGRGSAQSYCVLIAGEH-SQKTRKRLKIIEGSTDGFVIAEADLKLR 709 Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLY 688 GEI G +QSG+P + ++E AR AKHIL DP L R L YL Sbjct: 710 GPGEIRGTRQSGLPDLQLGDIVNDVDVIEDARALAKHILAHDPKLEHPR------LTYLR 763 Query: 689 QYNEA 693 Q +A Sbjct: 764 QELQA 768 >gi|323466296|gb|ADX69983.1| DNA helicase RecG [Lactobacillus helveticus H10] Length = 679 Score = 350 bits (898), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 217/677 (32%), Positives = 367/677 (54%), Gaps = 30/677 (4%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 N LFAP++ +GVG K + + G+ DLLFY P + + P + +I + Sbjct: 7 NALFAPVTDLKGVGTKTA------ADLGSLGIYSIYDLLFYFPFRYDELQTLP-LDQIMD 59 Query: 67 ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122 + V + G ++ S F +K R +K+ ++ ++ ++ F+ + LK+ G + Sbjct: 60 GQKVVLKGIVATEPFVSRFGYKKSRLSFKMRIDH---DVIMVNFFNQP-WLKSKIEIGEE 115 Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR- 181 + + GK + + +I D I P V K + + L+ Sbjct: 116 VAIYGKYNVARQSLSAFK--FIAAKENDSGMAPI-----YPVNRHVKQKKLVSLINLATD 168 Query: 182 --LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 L + + + +++ +K + E +H+P+ + + + A+ + E ++ Sbjct: 169 GFLDQVRDIVPENIREKYRLLTDQEIIQKMHHPKNSTE---ANLAKRSAIFREFFIFELQ 225 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L+ K+ G P N + K ++ ++PF + Q+ + +I DM +M R+LQ Sbjct: 226 LALLANHDGKQAGYPKNYDLKEIAQLTSSLPFELSDDQKEVVNEIFADMHSSGQMRRLLQ 285 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT+VA+ A+ AA+ AG Q +M P ILA QH++ I + + + V ++TGN Sbjct: 286 GDVGSGKTVVAVYAIFAAITAGYQVALMVPTEILATQHFKKIDELLRPLGVRVALLTGNT 345 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 RR+ + G +++IGTHAL Q+++ + KL LVI+DEQHRFGV QR L K Sbjct: 346 KTLERREIYRELTDGTINVMIGTHALIQENVIFKKLGLVIIDEQHRFGVGQRQALINKGD 405 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 P +L MTATPIPRTL LT GD+ +S+I PAGRKPI + +++ V ++++ L Sbjct: 406 QPDILAMTATPIPRTLALTVYGDMTVSEIHHMPAGRKPIISSWKTSSQMKNVYQKMQDQL 465 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSL-HEHFTSSIAIIHGRMSDIDKESVMDSFK 538 +G + Y + P I E + + ++ E L H+ + ++HG+M K+ +M +F Sbjct: 466 DQGFQIYAVTPLITESETLDLKNAEELHAKLSHDFPDQKVVLLHGQMPGPKKDEIMTAFA 525 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 +G +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+ S C+ + P Sbjct: 526 SGEINILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGKTQSYCVFVADP 585 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 + + R+ ++ T DGF +AEEDLK R EG++ G QSG+P+F + + + L + Sbjct: 586 K-TDSGKARMKIIAATNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYNTLVV 644 Query: 659 ARKDAKHILTQDPDLTS 675 A+K A+ ++ QDP L Sbjct: 645 AQKVARDLVQQDPKLAD 661 >gi|188588599|ref|YP_001920573.1| ATP-dependent DNA helicase RecG [Clostridium botulinum E3 str. Alaska E43] gi|188498880|gb|ACD52016.1| ATP-dependent DNA helicase RecG [Clostridium botulinum E3 str. Alaska E43] Length = 677 Score = 350 bits (898), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 246/680 (36%), Positives = 365/680 (53%), Gaps = 48/680 (7%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSS--FIDRH---------- 56 +++ +S+ +GVG K + L+K CG N +DLL Y P FID + Sbjct: 3 IYSEISSLKGVGPKLTEKLNK---CGIFN---ILDLLLYFPRDYEFIDSNILFEDINGDE 56 Query: 57 ---YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEML 113 R K+ I + I T TG I F+ + Y N + + Sbjct: 57 KQILRCKVIRIKGD-IKTKTGKILTTIEFEYNGHKVYGKWFN--------------QKYI 101 Query: 114 KNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKK 173 KN F+ + + GK K++ + + +P + + D + I Y L +S + +K Sbjct: 102 KNTFYNNKVYNLMGKFKRIGKTLEVANPTVVCEEALDNS---ILPKYPLKGDISNKIIEK 158 Query: 174 IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233 +I + + ++ E + D+L K + S+ +A IH P K KD A RL + EL Sbjct: 159 LINLVIDSI-IIKENLPLDMLNKYNLVSLNDAIRSIHFP-KNKDL--LEKAIIRLKFQEL 214 Query: 234 LA-GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292 LL+ K K + GI ++ +++ +IP+S T +Q +++IL+D + Sbjct: 215 FTYSLKLLLVKHKLNKNKNGIYFEWNNEL-KRLKDSIPYSLTNAQTKVVREILRDQKSQK 273 Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352 M R++QGDVGSGKT+VALI++ ++ G Q MAP ILA QHYE K Q+ I V Sbjct: 274 PMNRLVQGDVGSGKTIVALISIFNVIKNGYQCAFMAPTEILANQHYEESKNLFQDFNIDV 333 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 EI+TG+ +++ E+I ++IGTH LFQD + + +L L+I DEQHRFGV+QR Sbjct: 334 EILTGSTSLKEKKRIKEKIKQENPMLLIGTHTLFQDDVVFNRLGLIITDEQHRFGVEQRS 393 Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 KL K L+MTATPIPRTL L D+D+S I E P GRK I T + D Sbjct: 394 KLINKGKKADCLVMTATPIPRTLALYLYSDLDVSIIDELPPGRKKIDTRFYQEHNRDIGY 453 Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA--IIHGRMSDIDK 530 E ++ G++ Y +CP I+E ++ SV + L I I+HG+M +K Sbjct: 454 EIALEEINNGRQVYIVCPLIDEDEKEELNSVETLYTKLKNGIFKDIGVEILHGKMKSSEK 513 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 + ++ FKN K+LI+TTVIEVG++V +AS++IIENAE FGLAQLHQLRGRVGRGE S Sbjct: 514 QDKINRFKNNEFKVLISTTVIEVGVNVPNASVMIIENAERFGLAQLHQLRGRVGRGEYAS 573 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 CIL+ S + R++++ + DGFLI+EEDLK R GE+ G KQSG +F++A Sbjct: 574 YCILIAKAK-SNITKKRMTIMTESTDGFLISEEDLKLRGSGEMFGRKQSGDAEFILADLY 632 Query: 651 LHDSLLEIARKDAKHILTQD 670 S+L A+ +A +L D Sbjct: 633 EDISILRAAKHEAMEMLHND 652 >gi|251779934|ref|ZP_04822854.1| ATP-dependent DNA helicase RecG [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084249|gb|EES50139.1| ATP-dependent DNA helicase RecG [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 677 Score = 350 bits (898), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 246/680 (36%), Positives = 365/680 (53%), Gaps = 48/680 (7%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSS--FIDRH---------- 56 +++ +S+ +GVG K + L+K CG N +DLL Y P FID + Sbjct: 3 IYSEISSLKGVGPKLTEKLNK---CGIFN---ILDLLLYFPRDYEFIDSNILFEDINGDE 56 Query: 57 ---YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEML 113 R K+ I + I T TG I F+ + Y N + + Sbjct: 57 NQILRCKVIRIKGD-IKTKTGKILTTIEFEYNGHKVYGKWFN--------------QKYI 101 Query: 114 KNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKK 173 KN F+ + + GK K++ + + +P + + D + I Y L +S + +K Sbjct: 102 KNTFYNNKVYNLMGKFKRIGKTLEVANPTVVCEEALDNS---ILPKYPLKGDISNKIIEK 158 Query: 174 IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233 +I + + ++ E + D+L K + S+ +A IH P K KD A RL + EL Sbjct: 159 LINLVIDSI-IIKENLPLDMLNKYNLVSLNDAIRSIHFP-KNKDL--LEKAIIRLKFQEL 214 Query: 234 LA-GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292 LL+ K K + GI ++ +++ +IP+S T +Q +++IL+D + Sbjct: 215 FTYSLKLLLVKHKLNKNKNGIYFEWNNEL-KRLKDSIPYSLTNAQTKVVREILRDQKSQK 273 Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352 M R++QGDVGSGKT+VALI++ ++ G Q MAP ILA QHYE K Q+ I V Sbjct: 274 PMNRLVQGDVGSGKTIVALISIFNVIKNGYQCAFMAPTEILANQHYEESKNLFQDFNIDV 333 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 EI+TG+ +++ E+I ++IGTH LFQD + + +L L+I DEQHRFGV+QR Sbjct: 334 EILTGSTSLKEKKRIKEKIKQENPMLLIGTHTLFQDDVVFNRLGLIITDEQHRFGVEQRS 393 Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 KL K L+MTATPIPRTL L D+D+S I E P GRK I T + D Sbjct: 394 KLINKGKKADCLVMTATPIPRTLALYLYSDLDVSIIDELPPGRKKIDTRFYQEHNRDIGY 453 Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA--IIHGRMSDIDK 530 E ++ G++ Y +CP I+E ++ SV + L I I+HG+M +K Sbjct: 454 EIALEEINNGRQVYIVCPLIDEDEKEELNSVETLYTKLKNGIYKDIGVEILHGKMKSSEK 513 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 + ++ FKN K+LI+TTVIEVG++V +AS++IIENAE FGLAQLHQLRGRVGRGE S Sbjct: 514 QDKINRFKNNEFKVLISTTVIEVGVNVPNASVMIIENAERFGLAQLHQLRGRVGRGEYAS 573 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 CIL+ S + R++++ + DGFLI+EEDLK R GE+ G KQSG +F++A Sbjct: 574 YCILIAKAK-SNITKKRMTIMTESTDGFLISEEDLKLRGSGEMFGRKQSGDAEFILADLY 632 Query: 651 LHDSLLEIARKDAKHILTQD 670 S+L A+ +A +L D Sbjct: 633 EDISILRAAKHEAMEMLHND 652 >gi|116333593|ref|YP_795120.1| RecG-like helicase [Lactobacillus brevis ATCC 367] gi|116098940|gb|ABJ64089.1| ATP-dependent DNA helicase RecG [Lactobacillus brevis ATCC 367] Length = 677 Score = 350 bits (898), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 235/668 (35%), Positives = 372/668 (55%), Gaps = 40/668 (5%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 +S GVG K L + N N DLL Y P + D + +E++++ VT+ Sbjct: 8 VSQLAGVGPKRVQALQSL-GIENMN-----DLLTYFPFRYEDLQAKDP-AELTDQAKVTL 60 Query: 73 TGYISQH---SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 G ++ + F +K R LL D + + FF + LK+ G +I V G+ Sbjct: 61 KGTVAGAPVLTRFGRKKNRLNFRLLVDEHTAMPVTFFNQP--WLKDQLEVGNEIVVYGRF 118 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-----LPV 184 + + + S D + ++Y + KK++ EA + + + Sbjct: 119 DAKRQSLAGMK----ILASADSG---MGSIYPANKEIRQGTVKKLVAEAYEQYASVIVDL 171 Query: 185 LPEWIEKD--LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 +PE + + LL ++ +IH+ D AR ++E ++ L + Sbjct: 172 IPETLREHYRLLHRRE---------MIHDMHFPADETAAQAARRTAKFEEFYLFELRLQI 222 Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 ++ Q G P+ + + + ++P+ T +Q+ + +I D+ + M R+LQGDV Sbjct: 223 VKLQDHTLHGQPLAYDLSKLKAFIASLPYELTAAQKRVVNEICFDLKRPIHMNRLLQGDV 282 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKT+VA IAM AA+ AG QA +MAP ILA+QH + K + + V ++TG A Sbjct: 283 GSGKTVVAAIAMYAAITAGAQAALMAPTEILAEQHANNLAKLFADFPVNVALLTGATKAA 342 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 R+ L +IA G ++IGTHAL Q + Y++L L ++DEQHRFGV QR L +K P Sbjct: 343 ARKTLLPQIAQGGVDLLIGTHALIQPEVTYHQLGLAVIDEQHRFGVNQRQALREKGQQPD 402 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 VL MTATPIPRTL +T+ G++D+S I E PAGR+PIKT I N++D + ++K LS G Sbjct: 403 VLAMTATPIPRTLAITAYGEMDVSVINELPAGRQPIKTTWIRSNQVDATLRQVKAELSTG 462 Query: 483 KKAYWICPQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 +AY + P IEE + N ++ ERF + E T + ++HGRM D +K ++M +FK Sbjct: 463 SQAYVVTPLIEESEAVDMKNAEAIYERFKTEFEP-TYKVGLLHGRMKDDEKNAIMAAFKA 521 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 ++L+ATTVIEVG+DV +A++++I +A+HFGLAQLHQLRGRVGRG S+CIL+ P Sbjct: 522 NEFQVLVATTVIEVGVDVPNATLMMIYDADHFGLAQLHQLRGRVGRGTRASACILIADPK 581 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 ++ + R++ + +T DGF+++++DL+ R G+ILG KQSG+P F + P ++L A Sbjct: 582 -NQLAIERMTTMTSTNDGFVLSQKDLELRGPGDILGRKQSGVPDFKVGDPVADLNILSAA 640 Query: 660 RKDAKHIL 667 ++ AK + Sbjct: 641 QQAAKETV 648 >gi|256846084|ref|ZP_05551542.1| ATP-dependent DNA helicase RecG [Fusobacterium sp. 3_1_36A2] gi|256719643|gb|EEU33198.1| ATP-dependent DNA helicase RecG [Fusobacterium sp. 3_1_36A2] Length = 689 Score = 350 bits (898), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 228/608 (37%), Positives = 352/608 (57%), Gaps = 20/608 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK-RRPYKILLNDGTGEI 101 DL++Y P ++ DR KI E+ V + + + ++ ++ K ++ DGTG + Sbjct: 38 DLVYYFPRAYDDRTNIKKIGELKFNEYVVLKATVMSAVNLTVRSGKKIVKAMVTDGTGIM 97 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVY 160 +L+F +K G + G+ KK +++P Y +F Q V+ I +Y Sbjct: 98 EILWF--GMPYIKKSLKIGEEYLFIGQTKK-STVFQLINPEYKLFSGQQKVSKNEILPIY 154 Query: 161 SLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 S ++ + +K++ + L L E I K+L+++ A IH P K+ E Sbjct: 155 SSNKNITQNSLRKLVEKFLVNFLNYFEENIPKELIKEYKIMERKSAIKNIHYPISMKEIE 214 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI--AQKILRNIPFSPTKSQ 277 A+ R A +ELL ++ +L R + VEGK ++ L + F+ T +Q Sbjct: 215 ---EAKRRFAIEELLILELGILKNRFIIENSNSKNYEVEGKKEKVKEFLSQLTFNLTNAQ 271 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + IK+I ++S + R++QGDVGSGKT+VA++ + E G Q +MAP ILA QH Sbjct: 272 KKVIKEIYDEISNGKIVNRLIQGDVGSGKTVVAMVMLIYMAENGYQGALMAPTEILANQH 331 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y IK+ + + VE++T ++ + + LE IA+G+ I+IGTH+L +D++ + KL L Sbjct: 332 YLGIKERLEKIGLRVELLTSSIKGKKKNEILEGIANGEIDIVIGTHSLIEDNVVFKKLGL 391 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +++DEQHRFGV QR KL +K ++L+M+ATPIPR+L L+ GD+D+S I E P GR P Sbjct: 392 IVIDEQHRFGVNQRNKLREKGFLGNLLVMSATPIPRSLALSIYGDLDLSIIDELPPGRTP 451 Query: 458 IKTVIIPINRIDEVIERLKVVL----SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 IKT I DE +E++ + ++G +AY++ P IE + +SV + + Sbjct: 452 IKTKWIA---NDEDLEKMYNFIYKKVNDGNQAYFVAPLIETSDKMALKSVDKVSEEIERK 508 Query: 514 FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 F++ I IIHG+M +K+ VM FKN +LIATTVIEVGIDV ++I+ I NAE FG Sbjct: 509 FSNKKIGIIHGKMKAKEKDDVMLKFKNKEYDILIATTVIEVGIDVPASTIMTIYNAERFG 568 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 L+ LHQLRGRVGRG + S C L+ + +++NS RLS+++ TEDGF IAEEDLK R GE Sbjct: 569 LSALHQLRGRVGRGSKQSYCFLISN-SITENSKQRLSIMEETEDGFRIAEEDLKLRNSGE 627 Query: 633 ILGIKQSG 640 I G++QSG Sbjct: 628 IFGLRQSG 635 >gi|42528079|ref|NP_973177.1| ATP-dependent DNA helicase RecG [Treponema denticola ATCC 35405] gi|41819124|gb|AAS13096.1| ATP-dependent DNA helicase RecG [Treponema denticola ATCC 35405] Length = 678 Score = 350 bits (898), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 227/688 (32%), Positives = 364/688 (52%), Gaps = 49/688 (7%) Query: 11 APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70 PL+ GVG + +S++ G N DLL P + DR + + ++ + + Sbjct: 8 GPLTNIAGVG---AAAVSQLKRLGVENAG---DLLRLFPRDWEDRSKINVLLDWNKFQKI 61 Query: 71 TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 + ++ H F K + K+++ D G L + + L+ F G + V G Sbjct: 62 HVEITVAGHEWFGFGKMKTLKLIVADKNGMTASLICFNRP-FLEKSFPVGARAFVYGSFY 120 Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-----VL 185 + I + +++ ++ VY L +GL +KII AL L Sbjct: 121 RKYGEI--QSSAFDLEKPENMQSKIL-PVYPLTSGLGQAKLRKIIASALKMYAHGIDSEL 177 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 PE I LQK P E ++H P+ + E R L ++E Q A+ + + Sbjct: 178 PESI----LQKYGLPPKQEVLFMLHTPKSMAEVE---KGRYALIFEEFFLFQYAIGM--R 228 Query: 246 QFKKEIGIPINVEGK---------------IAQKILRNIPFSPTKSQESAIKDILQDMSQ 290 ++ +P N+E + + +L + F T+ Q S +I +D+ Sbjct: 229 SIERRGRLP-NLEDERNIDKTVKKEPVLRPLQSSLLERLNFKLTQDQLSVCAEINEDLDG 287 Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350 N M R++QGDVGSGKTLVA +A +E GGQ +AP +LA+QH E + + I Sbjct: 288 PNPMARLMQGDVGSGKTLVAFLACLKVIEQGGQTAFLAPTELLARQHAENAARLLEPLGI 347 Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410 + +TGN R + L+ + G +IIGTH+LF +QY L L ++DEQHRFGV Q Sbjct: 348 RLAFLTGNTKAKGRSRLLQELQKGNIDLIIGTHSLFSQGVQYKNLRLAVIDEQHRFGVLQ 407 Query: 411 RLKLTQKAT-------APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463 R + QK +PH+L+M+ATPIPRTL L+ GD+DIS I P GRKPI T + Sbjct: 408 RSAIIQKGAESNEEKRSPHLLMMSATPIPRTLALSIFGDLDISTIKTMPPGRKPIITYVA 467 Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIH 522 ++ + V + + +G++AY++ P IEE ++ + +S F L F + S+A+IH Sbjct: 468 GEDKAERVYNFIGQEILQGRQAYFVYPLIEENEDLSLKSAERMFEELKTGFPNHSLALIH 527 Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582 ++++ +++ +M+ F++G +L+AT+V+EVG+DV +A+ ++IE+A+ FGL+ LHQLRGR Sbjct: 528 SKVAEEEQKRIMEEFRSGKLNILVATSVVEVGVDVPNATCMVIEHADRFGLSALHQLRGR 587 Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642 VGRG+ + C L+Y ++++ RL+V+K T DGF+IAEEDL+ R G+I G++QSG Sbjct: 588 VGRGDLQAYCFLIYGKKITEDGRARLTVMKETNDGFIIAEEDLRLRGPGDIGGVEQSGYH 647 Query: 643 -KFLIAQPELHDSLLEIARKDAKHILTQ 669 F IA P +L+ AR A +L Q Sbjct: 648 LGFTIADPARDFKILQEARSAAFELLEQ 675 >gi|256752285|ref|ZP_05493148.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|256748853|gb|EEU61894.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacter ethanolicus CCSD1] Length = 432 Score = 350 bits (897), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 183/409 (44%), Positives = 270/409 (66%), Gaps = 3/409 (0%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 +PF T +Q +K+I+ DM+ M R++QGDVGSGKT+VA +M AV+ G Q +MA Sbjct: 3 LPFKLTLAQIKVLKEIIADMNSHKVMNRLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMA 62 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P ILA+QHY +K+ +NT I + +++G++ +++++ LE+I +G I++GTHAL +D Sbjct: 63 PTEILAKQHYHTLKELFRNTDIKIGLLSGSISPSNKKEVLEKIKNGDYDIVVGTHALIED 122 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 ++ + L L I DEQHRFGV+QR LTQK P VL+MTATPIPRT L GD+DIS I Sbjct: 123 NVIFNNLGLCITDEQHRFGVRQRALLTQKGENPDVLVMTATPIPRTFALILYGDLDISII 182 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 + P GRK +KT +I + ++ E + +G++ Y +CP IEE + N S + Sbjct: 183 DQLPPGRKKVKTYVISSSVREKAYEFAMKEVKKGRQVYVVCPLIEESDKINAMSAEIVYR 242 Query: 509 SLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 +++ + + ++HG+M+D DKE VM+ F NG +L++TTVIEVG++V +A+++I+E Sbjct: 243 EIYKDAFKEAKVGLLHGKMADSDKEKVMEEFVNGKIDILVSTTVIEVGVNVPNATVMIVE 302 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626 NAE FGLAQLHQLRGRVGR E S CIL+ + S + RL VL T DGF IAE+DL+ Sbjct: 303 NAERFGLAQLHQLRGRVGRSEFQSYCILISYSN-SDIAKKRLGVLAQTSDGFKIAEKDLE 361 Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 R GE LG++Q G+P+F IA +L+ +KD + +L +DP L + Sbjct: 362 IRGPGEFLGLRQHGLPEFKIANIFEDIDVLKRVQKDVEELLEKDPKLEN 410 >gi|327402490|ref|YP_004343328.1| ATP-dependent DNA helicase RecG [Fluviicola taffensis DSM 16823] gi|327317998|gb|AEA42490.1| ATP-dependent DNA helicase RecG [Fluviicola taffensis DSM 16823] Length = 699 Score = 350 bits (897), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 237/671 (35%), Positives = 374/671 (55%), Gaps = 22/671 (3%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE-ERIVTITG 74 +GVG + + L I + DLL++ P +IDR I +I + V + G Sbjct: 12 LKGVGPQRAKVLRDEIGIAT-----YYDLLYHFPFRYIDRSKFHAIKDIPFIDGYVQLKG 66 Query: 75 YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134 I S +++ + DGTG I L++F +L N+ I V GK K N Sbjct: 67 EIISVSETGTGRQKRLNVKFQDGTGIIDLVWFQGYKYILPNLKLNTTYI-VFGKAKPYVN 125 Query: 135 RIIMVHPHY--IFHNSQDVNF-PLIEAVYSLPT-GLSVDLFKKII--VEALSRLPVLPEW 188 + HP + D+ + P+ + L GL +K+I + L+ E Sbjct: 126 TWNISHPELNPATGSEDDLGWQPVYSSTEKLNAFGLHSKGIQKLIEHLLDLASKVYFEET 185 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247 I +Q+ + A IH P D AR R ++ELL QI LLL + Sbjct: 186 IPVKFIQELKLSTFPVAIRAIHMP---ADVTLAQKARTRFKFEELLNLQIELLLRKSINM 242 Query: 248 KKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 +K G ++ G+I N +PF T +Q+ +K+I +D+ +M R+LQGDVGSGK Sbjct: 243 QKSSGQVVSDVGQIFHDFYENNLPFPLTNAQKKVLKEIRRDIGSGFQMNRLLQGDVGSGK 302 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366 T+VAL+ + + + Q +MAP ILA QHY +++ + T + +EI+TG+ +A RR+ Sbjct: 303 TVVALLTILMGIGSDLQGALMAPTEILANQHYVGLQELLEGTSVTIEILTGSTKKAKRRE 362 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLL 425 E++ +G+ +I+IGTHAL +D +Q+ L +V++DEQHRFGV+QR +L +K T+ PH+L+ Sbjct: 363 IHEKLLNGEINILIGTHALLEDIVQFKNLGIVVIDEQHRFGVEQRSRLWKKNTSPPHILV 422 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T GD+D+S I E P GRKPI T V ++ ++ G++ Sbjct: 423 MTATPIPRTLAMTYYGDLDVSVIDELPPGRKPITTKHHFEKDRSLVFGFIRKEIALGRQI 482 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTC 542 Y + P I+E + ++ ++++ + ++ F ++I+HG+M K+ M F G Sbjct: 483 YIVYPLIQESETLDYNNLMDGYEAISRAFPLPDYRVSIVHGKMKPEVKDYEMQQFVEGKT 542 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 ++++ATTVIEVG++V +AS+++IE++E FGL+QLHQLRGRVGRG E S C+L+ LS Sbjct: 543 QIMVATTVIEVGVNVPNASVMVIESSERFGLSQLHQLRGRVGRGAEQSYCLLMTGSKLSA 602 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662 ++ R+ + T DGF I+E DL+ R G+I+G +QSG IA L+ +AR+ Sbjct: 603 DTKKRIHTMVRTNDGFEISEVDLELRGPGDIMGTQQSGTLDLKIADLAKDGPLVALAREK 662 Query: 663 AKHILTQDPDL 673 A+ +LT+DP L Sbjct: 663 ARELLTEDPRL 673 >gi|307264815|ref|ZP_07546377.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306920073|gb|EFN50285.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 432 Score = 349 bits (895), Expect = 9e-94, Method: Compositional matrix adjust. Identities = 183/409 (44%), Positives = 268/409 (65%), Gaps = 3/409 (0%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 +PF T +Q +K+I+ DM+ M R++QGDVGSGKT+VA +M AV+ G Q +MA Sbjct: 3 LPFKLTSAQIKVLKEIIADMNSHKVMNRLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMA 62 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P ILA+QHY +K+ +NT I + +++G++ +++++ LE+I G I++GTHAL +D Sbjct: 63 PTEILAKQHYYTLKELFKNTDIKIGLLSGSISPSNKKEVLEKIKSGDYDIVVGTHALIED 122 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 + + L L I DEQHRFGV+QR LTQK P VL+MTATPIPRTL L GD+DIS I Sbjct: 123 DVIFNNLGLCITDEQHRFGVRQRALLTQKGENPDVLVMTATPIPRTLALILYGDLDISII 182 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 + P GRK +KT +I + + E + +G++ Y +CP IEE + N S + Sbjct: 183 DQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKKGRQVYVVCPLIEESDKINAMSAEIVYR 242 Query: 509 SLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 +++ + + ++HG+M+D DKE +M+ F NG +L++TTVIEVG++V +A+++I+E Sbjct: 243 EIYKDAFKEAKVGLLHGKMADSDKEKIMEEFVNGKIDILVSTTVIEVGVNVPNATVMIVE 302 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626 NAE FGLAQLHQLRGRVGR E S CIL+ + S + RL VL T DGF IAE+DL+ Sbjct: 303 NAERFGLAQLHQLRGRVGRSEFQSYCILISYSN-SDIAKKRLGVLAQTSDGFKIAEKDLE 361 Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 R GE LG++Q G+P+F IA +L+ +KD + +L +DP L + Sbjct: 362 IRGPGEFLGLRQHGLPEFKIANIFEDIDVLKRVQKDVEELLEKDPKLEN 410 >gi|237785785|ref|YP_002906490.1| ATP-dependent DNA helicase [Corynebacterium kroppenstedtii DSM 44385] gi|237758697|gb|ACR17947.1| ATP-dependent DNA helicase [Corynebacterium kroppenstedtii DSM 44385] Length = 760 Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 197/520 (37%), Positives = 303/520 (58%), Gaps = 43/520 (8%) Query: 175 IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234 I + L R+P + Q K PS+ A +H P D + AR+RLA++E L Sbjct: 244 IPDPLPRVPTV---------QGKLLPSLDHAIRAMHMPSSWAD---QAMARKRLAFNEAL 291 Query: 235 AGQIALLLMRKQFKKEIGIPINV--EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292 Q+ +L R+ + P E ++L +PF T Q + ++I D++ Sbjct: 292 GLQL-ILASRRHAAADRRAPQCAPREDGYRAELLAGLPFDLTDQQRAVTEEIGDDIAATR 350 Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI-- 350 M R+LQGDVGSGKT+VALIAM AV+AG QA ++AP +LA QH + N + Sbjct: 351 PMCRLLQGDVGSGKTIVALIAMLQAVDAGCQAALLAPTEVLAAQHAHSLMTMMANAGVAA 410 Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410 + ++TG+M + R++ L + G+ I++GTHAL D+++++ L LV+VDEQHRFGV+Q Sbjct: 411 TIRLVTGSMSTSSRQETLLSLMTGETDIVVGTHALLSDNVEFFNLGLVVVDEQHRFGVEQ 470 Query: 411 RLKLTQKAT-------APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463 R +L + PH L+MTATPIPRT+ +T+ GD+++S ITE P GRKPI++ ++ Sbjct: 471 RDRLRGRGRDTEDGPLTPHQLVMTATPIPRTVAMTTFGDLNVSTITELPGGRKPIQSSVV 530 Query: 464 PINR---IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--- 517 P + +D +R++ + G++AY +CP+I+ N ++E T Sbjct: 531 PEWKKGWLDRAYQRIREEVESGRQAYIVCPRIQGDGG---------VNDMYEKLTVGPLH 581 Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + ++HG++ + DKE +M F G C +LI+TTVIEVG+DV +A++++I AE+FG++ Sbjct: 582 GLRVGMLHGQLPNPDKERIMGKFSRGDCDVLISTTVIEVGVDVPNATLMLIREAENFGIS 641 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGR+GRG S C+ P +SY RL + T DGF +AE DL R EG+++ Sbjct: 642 QLHQLRGRIGRGSHASWCLFHTAQPEDSDSYRRLQGVAATTDGFALAELDLATRSEGDLV 701 Query: 635 GIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDL 673 G QSG + +HD L+E A+ +A+HI+ DP L Sbjct: 702 GADQSGRSTHIRLLDVVHDEPLIEAAKTEAEHIVQTDPGL 741 >gi|332297440|ref|YP_004439362.1| ATP-dependent DNA helicase RecG [Treponema brennaborense DSM 12168] gi|332180543|gb|AEE16231.1| ATP-dependent DNA helicase RecG [Treponema brennaborense DSM 12168] Length = 744 Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 237/755 (31%), Positives = 368/755 (48%), Gaps = 96/755 (12%) Query: 6 LNPLFAPLSTFRGVG-KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64 L + P+ST G+G + LF + I DLL Y+P + DR R +++ Sbjct: 3 LTEIETPVSTLAGIGPARAKLFAALGIYT-------VADLLAYYPRDWEDRTQRVPLAQF 55 Query: 65 SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124 V ++ HS F K + KI + DG+ + L+ F R L+ +G I Sbjct: 56 RSNGKVHTVARVTGHSWFGYGKMKTLKIHITDGSADAELVAFNRP--FLEKSLPDGAIIA 113 Query: 125 VTGKIKKLKNRI-------IMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKII 175 VTG + R+ ++ P + P + VYSL GLS +K + Sbjct: 114 VTGTFSERYGRLQSSAFETALIAPGGSLAEYETKRVPGSAVFPVYSLTAGLSQAQMRKAV 173 Query: 176 VEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNP---RKAKDFEWTSPARERLAYD 231 +AL + + + D+++ + A + +H P R+A D AR L Y+ Sbjct: 174 RKALQEYARGIEDTLPADVIETRHLLRKQAALHAMHCPETLRQALD------ARRTLIYE 227 Query: 232 ELLAGQIALLLMRKQFKKEIG--------------IPINVEGKIAQ-------------- 263 EL Q A+ L + K + +P N E + Q Sbjct: 228 ELYHFQTAIGLSALRHKGRLPDDEKQPFFATGSDVMPENSEREHTQETLTETFARKLSPR 287 Query: 264 --KILRNIPFSPTKSQESAIKDILQDMSQKNR-------------MLRILQGDVGSGKTL 308 K+ ++PF T Q I ++ D+ + + M R++QGDVGSGKTL Sbjct: 288 QKKLFDSLPFELTADQMKCISEMNDDIDRAEQSRAKAAAGKPLYTMARLVQGDVGSGKTL 347 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 A A + GGQ ++AP +LA+QH E K + T + + +TGN+ R L Sbjct: 348 TAFFACLRTADWGGQCALLAPTELLARQHAESAAKLLEQTGVTLAFLTGNITAESRGPLL 407 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA---------- 418 + + G I+IGTHALF ++ Y L L ++DEQHRFGV QR + +K Sbjct: 408 KSLKAGDIDIVIGTHALFSRNVHYKDLRLAVIDEQHRFGVLQRNAIIEKGRQPAAPDSPQ 467 Query: 419 -TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 P +L+++ATPIPRTL LT+ GD+D+S I P GR P+KT + + V + ++ Sbjct: 468 YVVPSLLMLSATPIPRTLALTAFGDLDVSVIRTMPRGRLPVKTYLTRMGNEKNVYDYVRA 527 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVE-------------RFNSLHEHFTSSIAIIHGR 524 +++G +AY++ P+IEE + + S++ RF S + IA++H R Sbjct: 528 EVAKGHQAYFVYPRIEESESDDDGSLIPDTGNGIKNAEDMYRFLSQEVYPQFRIALVHSR 587 Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584 + + ++ ++D FKNG +L+AT+V+EVG+DV +A+ +++E+A+ FG+A LHQLRGRVG Sbjct: 588 IEEAEQHRILDDFKNGRTDILVATSVVEVGVDVPNATCMVVEHADRFGMAALHQLRGRVG 647 Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644 R S C L+Y +SK R+ L T DGF+IAE+DL+ R GE+ GI+QSG Sbjct: 648 RSSLQSFCFLVYGAHISKTGIERMKALHETTDGFVIAEQDLQLRGPGEVSGIQQSGYLTL 707 Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679 IA P LLE+AR+DA + + P S Q Sbjct: 708 GIADPVRDSQLLELARQDAFDHIRRSPAYASALAQ 742 >gi|325280602|ref|YP_004253144.1| ATP-dependent DNA helicase RecG [Odoribacter splanchnicus DSM 20712] gi|324312411|gb|ADY32964.1| ATP-dependent DNA helicase RecG [Odoribacter splanchnicus DSM 20712] Length = 699 Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 246/702 (35%), Positives = 370/702 (52%), Gaps = 46/702 (6%) Query: 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 M + LN F P GVG+K + L + + + + D+L++ P +IDR Sbjct: 1 MELAGLNIKFLP-----GVGEKKAAVLYEELQVQS-----YEDMLYHVPFKYIDRSKIYS 50 Query: 61 ISEISEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119 I+E++ + I I + K D TG + L++F + + L N Sbjct: 51 IAELNGRLPYIQIKAKIRNLKTIGEGKALRMTATAYDETGTLELVWF-KGFKFLTNQIEP 109 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIV--E 177 ++ + G+ + +++ +VHP +AVY PT + KK + + Sbjct: 110 DKEYLIFGQPSEFNHKLNIVHPEIDSFEKASQLLVGFQAVY--PT---TEKMKKAFLNSK 164 Query: 178 ALSRL-------------PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPA 224 A+S++ LP W +Q+ + EA IH P + A Sbjct: 165 AISKIQDSIFKTIKGKISETLPAW----FIQQHKLMYLHEALYNIHFPENP---DMLRKA 217 Query: 225 RERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIK 282 RL ++EL Q+ +L ++ + K G G+ R +PF T +Q+ IK Sbjct: 218 LFRLKFEELFYIQLNILKLKYKRKTYFKGHEFKTIGEYFNTFYHRYLPFELTDAQKRVIK 277 Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342 +I QD +M R+LQGDVGSGKTLVA++ M A++ Q +MAP ILA QHYE I+ Sbjct: 278 EIRQDCGSGKQMNRLLQGDVGSGKTLVAVMCMLMALDNCCQTCLMAPTEILATQHYETIQ 337 Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402 I V ++TG+ + R + + G I+IGTHAL +D + + + LVI+DE Sbjct: 338 GMLGEMGITVALLTGSTKKREREEIHRGLQDGSLQILIGTHALLEDVVSFQNIGLVIIDE 397 Query: 403 QHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461 QHRFGV QR KL QK T PHVL+MTATPIPRTL +T GD+D+S I E P GRKPI T Sbjct: 398 QHRFGVAQRAKLWQKNTIPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPITTF 457 Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SI 518 + EV + ++ L +G++AY + P I E ++ +FR++ E + ++ +F + Sbjct: 458 HAFDKKRLEVFQFIEKELLKGRQAYVVYPLIYESEKMDFRNLEEGYEQINNYFLPKGYKV 517 Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578 ++HG++ +K+S M F K+L++TTVIEVG++V +ASI++IE+AE FGL+QLHQ Sbjct: 518 GMVHGKLKPAEKDSEMRRFVTAETKILVSTTVIEVGVNVPNASIMVIESAERFGLSQLHQ 577 Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638 LRGRVGRG + S CIL+ +S +S R+ + T DGF IAE DLK R G+I G +Q Sbjct: 578 LRGRVGRGADQSYCILMTSYKISNDSRKRIDTMTATNDGFEIAEADLKLRGPGDIEGTQQ 637 Query: 639 SGMPKFLIAQPELHDSL-LEIARKDAKHILTQDPDLTSVRGQ 679 SG+ L D+L L A + A IL++D DL Q Sbjct: 638 SGLTCSLKVANLGKDTLILNEATRIANGILSEDADLIKEENQ 679 >gi|304439763|ref|ZP_07399661.1| DNA helicase RecG [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371750|gb|EFM25358.1| DNA helicase RecG [Peptoniphilus duerdenii ATCC BAA-1640] Length = 670 Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 223/680 (32%), Positives = 367/680 (53%), Gaps = 49/680 (7%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 LF L T GVG K +L + ET DL Y P FID I ++ E Sbjct: 3 LFDKLDTLNGVGPKKKSYLEAM-----GLET-ISDLAEYFPIRFIDSTNMKPIKDLVEGE 56 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 TI + Q + + +++ DG + + FF + L + F +G + GK Sbjct: 57 FATIKAEVVQVVPHYHGRLKRLDVIVTDGFN-LKISFFNQN--FLSSTFLKGEQFYFYGK 113 Query: 129 IKKLKNRIIMVHPHY--------------IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKI 174 + + N + M P + ++ S+D+N + + L ++ Sbjct: 114 VSRFGNNLTMTSPKFENVKRKKVLGSIIPVYQQSKDINNKEL-----------IKLTDQV 162 Query: 175 IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234 + E + VLP+ ++L+K + + +H P+ K + AR ++ E+L Sbjct: 163 LKEYAWK-NVLPQ----EILEKYKLYDMDKTMRELHRPKSQKTY---GNARNSYSFYEIL 214 Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 +AL ++K ++E I + +E +I ++ L +PF+ T SQ I+++ D+ R+ Sbjct: 215 IYLLALSTIKKD-REETDIKL-IEFEI-EEFLNTLPFTLTDSQMKVIEEVKGDLKSGYRV 271 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R++QGDVGSGKT+VA+ M + G Q+ IMAP ILA QH+ K I V + Sbjct: 272 DRLIQGDVGSGKTVVAMAIMYLFYKNGFQSAIMAPTEILATQHHNSFKNTFDKLGINVAL 331 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 + G+M ++ + + LE + G+ +I+GTHAL +++++ L + IVDEQHRFGV QR L Sbjct: 332 LIGSMKKSQKDEVLEDLKSGKVDMIVGTHALISENVEFKNLGISIVDEQHRFGVLQRKNL 391 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 + K H ++MTATPIPRTL L D+ +S I PAGR I+T I N + + +E Sbjct: 392 SDKGV--HTIVMTATPIPRTLALVMYQDLQVSTIDTPPAGRLKIQTATINENGLIKALEF 449 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533 ++ L EG++AY ICP I+E + + SV + + + ++F ++ ++HG+M +K+ Sbjct: 450 IEKELKEGRQAYIICPMIDENEMLDLNSVKKVYKEIKKYFKDYNVGLLHGQMKPDEKDRQ 509 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M+ F+ +L++TTV+EVG++V +A+++++ NAE FGL+QLHQLRGRVGRG CI Sbjct: 510 MEDFEKNKINVLVSTTVVEVGVNVPNATVMMVVNAERFGLSQLHQLRGRVGRGTHQGYCI 569 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 LY+ S+ + R+ V+ + DGF I+E+DL+ R G+I G++QSG F++A P Sbjct: 570 -LYNKSESEIASMRMKVMVESTDGFYISEKDLELRGSGDIFGVRQSGFMGFIMANPIKDK 628 Query: 654 SLLEIARKDAKHILTQDPDL 673 +L+ A +AK+I DPD Sbjct: 629 MILKYAALEAKNIYRDDPDF 648 >gi|119717509|ref|YP_924474.1| ATP-dependent DNA helicase RecG [Nocardioides sp. JS614] gi|119538170|gb|ABL82787.1| ATP-dependent DNA helicase RecG [Nocardioides sp. JS614] Length = 750 Score = 348 bits (894), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 230/701 (32%), Positives = 368/701 (52%), Gaps = 72/701 (10%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRR----PYKILLNDGT 98 DLL + P ++ +I E+ E ++T+ G I+ + RR Y++ + T Sbjct: 33 DLLRHFPRRYVKTGELTRIDELHEGELLTVVGQITSSKLNTYEDRRTHRPAYRVDVTVRT 92 Query: 99 -GEITLLFFYRKTEMLKNVFFE-----GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN 152 G + + KT + E GR+ GK+ + + HP + + D + Sbjct: 93 DGPSFRISMFAKTRHMGEWQQEKRMPVGRRGIFVGKVSSFRGNWQLTHPQVVLFGTPDED 152 Query: 153 FPLIE--------AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAE 204 + +Y L G+ ++ + AL+ + +P+ + ++ ++ + Sbjct: 153 AAQLSLDAIGELYPIYPLTKGVDSWDLQRAVAFALTMVDDVPDLVPPEVRERHGLLDVRT 212 Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV--EGKIA 262 A IHNP D + A+ R ++E L Q+ L ++ +E+G +G + Sbjct: 213 ALRHIHNP---DDRAQITSAQRRFRFEEALVTQLVLARR-RRAVRELGARARTGEDGGLL 268 Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 +PF T Q +I D++Q + M R+LQG+VGSGKTLVAL AM V++GG Sbjct: 269 AAFDARLPFELTAGQREIGAEIEADLAQPHPMNRLLQGEVGSGKTLVALRAMLRVVDSGG 328 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQII-----------VEIITGNMPQAHRRKALERI 371 QA ++AP +LAQQH+ I + VE++TG+M +A R + R+ Sbjct: 329 QAALLAPTEVLAQQHHRSITAMLGDLAGGGMLGGAAEATNVELLTGSMTKAQRTAPMSRL 388 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATP 430 A G+A I+IGTHAL ++ + + L LV+VDEQHRFGV+QR LT KA T PHVL+MTATP Sbjct: 389 ASGEAGIVIGTHALLEEKVAFADLGLVVVDEQHRFGVEQRAALTDKAGTPPHVLVMTATP 448 Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAY 486 IPRT+ +T GD++ S +TE PAGR PI+T ++P+ + V ER++ + +G++AY Sbjct: 449 IPRTVAMTVFGDLETSTLTELPAGRAPIQTNVVPLAEQPHWLPRVWERVREEVDKGRQAY 508 Query: 487 WICPQI----EEKKESNFRSVV----ERFNSLH-----------EHFTSSIAI------- 520 +CP+I E+ E++ +S+ E N L E + +A Sbjct: 509 VVCPRITGDESEQGETDAQSIYVDLDEDGNILAPPGASVTLNAVEEVAAQLADGPLAGLR 568 Query: 521 ---IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 +HG+M+ DK++VM +F G +L++TTVIEVG+DV +A+ +++ +A+ FG++QLH Sbjct: 569 VERLHGKMAPEDKDAVMRAFAAGGVDVLVSTTVIEVGVDVANATAMVLLDADRFGVSQLH 628 Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637 QLRGRVGRG C+L+ + RL+ + T DGF ++ DL+QR+EG++LG Sbjct: 629 QLRGRVGRGGHPGICLLVSWAEQETPARERLAAVAATTDGFELSRVDLEQRREGDVLGRS 688 Query: 638 QSGMPKFLIAQPELHD--SLLEIARKDAKHILTQDPDLTSV 676 QSG L L D +++E AR A +L DPDL Sbjct: 689 QSGYRSSLHDLRVLRDEKTIVE-ARGAALDLLEADPDLAGT 728 >gi|297202618|ref|ZP_06920015.1| ATP-dependent DNA helicase RecG [Streptomyces sviceus ATCC 29083] gi|197713193|gb|EDY57227.1| ATP-dependent DNA helicase RecG [Streptomyces sviceus ATCC 29083] Length = 742 Score = 348 bits (894), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 233/759 (30%), Positives = 380/759 (50%), Gaps = 82/759 (10%) Query: 3 PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62 P+ PL PL +G + +++ + + DLL ++P + +R ++ Sbjct: 5 PALEEPLEQPLKAV--LGPATAKVMAEHLGLHSVG-----DLLHHYPRRYEERGQLTHLA 57 Query: 63 EISEERIVTITGYISQ---HSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEMLKN 115 ++ + VT+ ++ H+ + R ++ + DG+G + L+FF Sbjct: 58 DLPMDEHVTVVAQVADARLHTFASAKAPRGKGQRLEVTITDGSGRLQLVFFGNGVHKPHK 117 Query: 116 VFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN---------------FPLIEAVY 160 G + GK+ R+ + HP Y D +P + Sbjct: 118 ELLPGTRALFAGKVSLFNRRLQLAHPAYELLRGADDEAAETVESWAGALIPLYPATAKLE 177 Query: 161 SLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220 S G ++ EA+ LP + L + + + EA IH P D Sbjct: 178 SWKIGKAIQTVLPSAQEAIDPLP-------QSLREGRGLLPLPEALLKIHRPHTKADI-- 228 Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQES 279 + A RL +DE Q+AL R+ + +P + +PF+ T Q+ Sbjct: 229 -ADAHARLKWDEAFVLQVALARRRRADAQLPAVPRKPAPDGLLSAFDDRLPFTLTDGQQK 287 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 K+I D++ + M R+LQG+VGSGKTLVAL AM A V+AGGQA ++AP +LAQQH+ Sbjct: 288 VSKEIFDDLATDHPMHRLLQGEVGSGKTLVALRAMLAVVDAGGQAAMLAPTEVLAQQHHR 347 Query: 340 FIKKYT-------------QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 I + Q T+++ ++TG+M A RR+A+ + G+A I+IGTHAL Sbjct: 348 SIVEMMGELAEGGMLGGSEQGTKVV--LLTGSMGTAARRQAMLDLVTGEAGIVIGTHALI 405 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDI 445 +D +Q++ L LV+VDEQHRFGV+QR L K PH+L+MTATPIPRT+ +T GD++ Sbjct: 406 EDKVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLET 465 Query: 446 SKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 S + + PAGR PI + ++P + ER++ + G +AY +CP+I ++++ + Sbjct: 466 SVLDQLPAGRSPIASHVVPAADKPHFLTRAWERVREEVENGHQAYVVCPRIGDEEDDPKK 525 Query: 502 SVVERFNSLHEHFTSSIAII-------------------HGRMSDIDKESVMDSFKNGTC 542 S ++ +A++ HGRM DK++VM F G Sbjct: 526 SAKQKSAEDEAEKRPPLAVLDIADQLVKGPLSGLRVEVLHGRMHPDDKDAVMRRFAAGET 585 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 +L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQLRGRVGRG C+L+ P + Sbjct: 586 HVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVSEMPEAS 645 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARK 661 + RL+ + +T DGF ++ DL+QR+EG++LG QSG L + D ++ AR+ Sbjct: 646 PARQRLNAVASTLDGFELSRIDLEQRREGDVLGQAQSGARTSLRVLAVIEDEEIIAEARQ 705 Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 +A ++ DP+LT + G +R L E Q++ G Sbjct: 706 EATAVVEADPELTELPG--LRTALDALVDEEREQYLEKG 742 >gi|187931154|ref|YP_001891138.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp. mediasiatica FSC147] gi|187712063|gb|ACD30360.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp. mediasiatica FSC147] Length = 679 Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 226/646 (34%), Positives = 363/646 (56%), Gaps = 36/646 (5%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75 F GVG+ L+K N + N DLL P + D I+ + I G Sbjct: 6 FNGVGEATIKALAKY-NIHDPN-----DLLTIFPKDYKDTRVITPINHLVAGNRSLIQGR 59 Query: 76 ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135 ++ + +++ ++ + +ND TG +++ F L + + + GK++ Sbjct: 60 VT-NLTYKKFGKKFLRFNINDNTGFCSVILFKFYPNQLA-ILEKSEYVRCYGKVE-FSLS 116 Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS-VDLFKKIIVEALSRLPV-------LPE 187 MVHP + N+ + +L G S V FKKI +S++ + + Sbjct: 117 PQMVHPEWATVNNGEC---------ALKQGFSAVYRFKKIPDRLISKMILKMLQDNRVEN 167 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247 I LL++ + S +A +H D ++ S AR + ++E+LA ++A + K Sbjct: 168 IIPSQLLRRFNLISFCDALYYVHALTNFIDEKYLSIARFSIKFEEMLAYKLAEQNIYKNT 227 Query: 248 KKEIGIPINVEGKIAQ-KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 K P KI Q + +P+ T +Q+ AI +IL D+ + N M R+LQGDVG+GK Sbjct: 228 VKAQA-PQLFLTKIQQNEFYEKLPYQLTNAQQRAITEILDDIKKSNAMNRLLQGDVGAGK 286 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366 T+VA IA AAV++G Q +MAP ILA+QH+ F+ +Y + I V + G + R+ Sbjct: 287 TIVATIAAYAAVKSGYQVAMMAPTEILAEQHFSFLSQYLASFDIKVIPLLGKLSAKQTRE 346 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------ 420 +L++I + +++GTHA+FQ+ ++Y L LVIVDEQHRFGV+QRL L K+++ Sbjct: 347 SLDKIKDQKDCVVVGTHAIFQERVEYCNLGLVIVDEQHRFGVEQRLALVSKSSSNFSDLT 406 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 PH L+++ATPIPRTL +T G++ +S + E P RKPI T ++ + +IE++K + Sbjct: 407 PHQLIISATPIPRTLAMTLYGNLKLSILDELPPKRKPIITTVLNRAKKQNLIEKVKQAVL 466 Query: 481 EGKKAYWICPQIEEKKESNF-RSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFK 538 G++ YW+CP +EE + +F + V + L E ++ +++G M DK M +FK Sbjct: 467 RGEQVYWVCPLVEESENMDFLQDVKTLYQELLEALGKENVGLVYGSMKSKDKIEQMAAFK 526 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 +L+ATTVIEVG+DV +A+I+II+NAE G++QLHQLRGRVGRG + S CILLY Sbjct: 527 AKKYAVLVATTVIEVGVDVPNATIMIIDNAERLGISQLHQLRGRVGRGAKESYCILLYSD 586 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644 +S+ RLS+++ ++DGF +AE+DL+ R G+I+G +QSG+ F Sbjct: 587 KISEVGKRRLSLVRESQDGFYLAEKDLEIRGAGDIIGKEQSGVSTF 632 >gi|291166899|gb|EFE28945.1| ATP-dependent DNA helicase RecG [Filifactor alocis ATCC 35896] Length = 684 Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 228/661 (34%), Positives = 360/661 (54%), Gaps = 23/661 (3%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 + + +G+G K + L ++ ET D L Y P + DR + EI E V Sbjct: 7 MESIKGIGSKKATLLKQL-----GIET-IEDFLLYFPFRYEDRATHVPLDEIRTEDKVFS 60 Query: 73 TGYISQHSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 +G I SFQ + +P KI + G+ ++ + + K + G I G Sbjct: 61 SGRIV---SFQTSRPKPKMTITKITVCSELGKEGVITIFNNPYLHKQ-YSVGDCIQFYG- 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188 + ++K R I+ I ++V I +Y L GLS + L L L E Sbjct: 116 MCQIKGRKILFSSPEIEPFGKNVLMNYIYPIYPLVKGLSNHDMVNAMRTILQSLGELEEV 175 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248 + LLQK+S A IH P + AR RL Y E Q+ LL +R + + Sbjct: 176 FPESLLQKRSLAPFDFAVRNIHFPHSVSALK---SARYRLIYQEFFMLQMHLLNLRNKDE 232 Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 + E + A+ IPF T +Q+ ++++ +D+ Q+ M R++QGDVGSGKT+ Sbjct: 233 TARSFVLK-ELEQAKSFFDKIPFELTNAQKRVLQEMTEDLKQEKPMQRLVQGDVGSGKTV 291 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 +A A G Q V+MAP +LA+QHYE KK + + + + ++G++ + + + Sbjct: 292 LAWYATYLTFLNGYQTVLMAPTEVLAKQHYEGAKKLFEGSGVRIAFLSGSISKKKKEEIY 351 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-QKATAPHVLLMT 427 + I+ G ++IGTHA+ Q+ + + KL L I DEQHRFGV+QR KL+ Q +PH+L+MT Sbjct: 352 QGISDGDYDLVIGTHAVIQEGVHFSKLALAITDEQHRFGVKQRGKLSKQYEISPHILVMT 411 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL L GD+DIS I E P GRK I+T I + V + L +G++ Y Sbjct: 412 ATPIPRTLTLVLQGDLDISIIDELPKGRKQIETYAIEQKKAHMVYGQCIGELQKGRQLYI 471 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545 +CP ++E + + +S E + SL SS + ++HG+M +K +M ++ +L Sbjct: 472 VCPLVKESEVLDLKSAEELYESLKTGVFSSFRVGLLHGKMKSSEKTEMMRQYQEHEIDVL 531 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 ++TTVIEVGI+V +A+++IIE+A+ FGL+QLHQLRGRVGRG + S C L+Y + + Sbjct: 532 VSTTVIEVGINVPNATVMIIEDAQRFGLSQLHQLRGRVGRGSDQSYCYLIYR-GYDQVAL 590 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665 R+ V+ +T DGF+IAE+DL+ R GE+LG+KQ G+P+ +A H ++ +++D + Sbjct: 591 KRMQVMTSTNDGFVIAEKDLEIRGPGEVLGVKQHGIPELKLADFTKHQKVMFASKEDIQE 650 Query: 666 I 666 + Sbjct: 651 L 651 >gi|294815344|ref|ZP_06773987.1| ATP-dependent DNA helicase RecG [Streptomyces clavuligerus ATCC 27064] gi|326443698|ref|ZP_08218432.1| ATP-dependent DNA helicase RecG [Streptomyces clavuligerus ATCC 27064] gi|294327943|gb|EFG09586.1| ATP-dependent DNA helicase RecG [Streptomyces clavuligerus ATCC 27064] Length = 784 Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 235/745 (31%), Positives = 376/745 (50%), Gaps = 95/745 (12%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 +PL PL+ R +G + L + + DLL ++P + +R +++E+ Sbjct: 42 DPLDEPLT--RTLGPASAKVLGEQLGLRTVG-----DLLHHYPRRYEERGRLTRLAELPL 94 Query: 67 ERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124 + VT+ ++ +F + + ++ + DG+G + L+FF R G + Sbjct: 95 DEEVTVVAQVADARVHTFNGGRGKRLEVTITDGSGRLQLVFFGRGVHKPHQELLPGTRAM 154 Query: 125 VTGKIKKLKNRIIMVHPHYI----------------------FHNSQDVNFPLIEAVYSL 162 G++ ++ + HP Y + + +P + + S Sbjct: 155 FAGRVSVFNRKLQLAHPSYAKLGTGDGADGGGGHDDGTAVDSWAGALIPIYPACKGMESW 214 Query: 163 PTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS 222 +VD EA LP L + + F + EA +H PR D E Sbjct: 215 KIAKAVDAVLPRRTEATDPLP-------PALREGRGFVPLPEALLKVHRPRTKADIEA-- 265 Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPI----NVEGKIAQKILRNIPFSPTKSQE 278 AR+RL +DE Q+AL R++F + +P G I +PF+ T+ Q Sbjct: 266 -ARQRLKWDEAFVLQVAL--ARRRFA-DTQLPAVARRPAPGGILDAFDARLPFTLTEGQR 321 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I D++ ++ M R+LQG+VGSGKTLVAL AM A V+AGGQA ++AP +LAQQH+ Sbjct: 322 KVTGEIFGDLATEHPMHRLLQGEVGSGKTLVALRAMLAVVDAGGQAAMLAPTEVLAQQHH 381 Query: 339 EFIKKYTQN-------------TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 + + + T+++V +TG+M A RR AL + G+A I+IGTHAL Sbjct: 382 RSVVEMMGDLADGGTLGAPDGATKVVV--LTGSMGAAARRAALLDLVTGEAGIVIGTHAL 439 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDID 444 +D +Q++ L LV+VDEQHRFGV+QR L K PH+L+MTATPIPRT+ +T GD++ Sbjct: 440 IEDKVQFHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLE 499 Query: 445 ISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500 S + + PAGR PI + ++P + ER++ + +G +AY +CP+I +++E Sbjct: 500 TSVLDQLPAGRSPIASHVVPARDKPHFLARAWERVREEVGKGHQAYVVCPRIGDEEEGTG 559 Query: 501 R------------------------SVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVM 534 +V+E L + I ++HGRM DK++VM Sbjct: 560 AAAKSGRKAADEEAQAADAEKRPPLAVLEIAEELERGPLAGLRIGVLHGRMPPEDKDAVM 619 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F G +L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQLRGRVGRG C+L Sbjct: 620 RRFTAGEVDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLL 679 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD- 653 + P + + RL + T DGF ++ DL+QR+EG++LG QSG L + D Sbjct: 680 VTEMPAASPARARLGAVAATLDGFELSRIDLEQRREGDVLGQAQSGARSSLRMLAVIEDE 739 Query: 654 SLLEIARKDAKHILTQDPDLTSVRG 678 ++ AR++A + DP+L G Sbjct: 740 EVIAAAREEAVRTVRADPELEHTPG 764 >gi|225389053|ref|ZP_03758777.1| hypothetical protein CLOSTASPAR_02798 [Clostridium asparagiforme DSM 15981] gi|225044875|gb|EEG55121.1| hypothetical protein CLOSTASPAR_02798 [Clostridium asparagiforme DSM 15981] Length = 685 Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 218/669 (32%), Positives = 360/669 (53%), Gaps = 21/669 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP-KISEISEERIV 70 P+S+ +G+G K + K+ DLL Y+P ++ D P I ++ E ++ Sbjct: 6 PISSLKGIGDKTAALFEKL------GVYTVADLLAYYPRAY-DAFEEPVAIGQLKENSVM 58 Query: 71 TITGYISQHSSF-QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + + +H+ + + + + D TG + + ++ ++ G G++ Sbjct: 59 AVQSALVKHADLLRFNHMQVVSLQIKDLTGSLQVSWY--NMPYMRANLKPGEMYVFRGRV 116 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + + R+IM P + ++ +Y GL K +AL + E++ Sbjct: 117 VRKRGRLIMEQPEVFTPQAYGELVHSMQPIYGQTRGLGNKAIVKAQTQALQLRQMEREYM 176 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFK 248 L ++ I A IH P + + AR+RL +DE + + L K+ Sbjct: 177 PATLRKRYELAEINYAVEHIHFPADQSELLY---ARKRLVFDEFFLFLVGVRKLKEKRAD 233 Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 K + ++A + +P+ T +QE ++++ D+S M R++QGDVGSGKT+ Sbjct: 234 KRSPYVMEFREEVA-RFQEALPYRLTGAQERTLREVFDDLSGGLVMNRLIQGDVGSGKTI 292 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE--IITGNMPQAHRRK 366 +A++A+ A G Q +MAP +LA+QH+E I + + +I + ++TG+M +R Sbjct: 293 IAVLALLMAACNGYQGALMAPTEVLAKQHFESITQLFETYKIEKKPVLVTGSMTAKEKRL 352 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426 A E+I +A I+IGTHAL Q+ + Y L LVI DEQHRFGV QR L+ K PHVL+M Sbjct: 353 AYEQIERHEADIVIGTHALIQEKVHYDNLALVITDEQHRFGVGQRELLSSKGGDPHVLVM 412 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486 +ATPIPRTL + GD+DIS I E P GR+PIK ++ + + + EG++AY Sbjct: 413 SATPIPRTLAIILYGDLDISVIDELPQGRQPIKNCVVNTGYRPKAYSFIARQVEEGRQAY 472 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKL 544 ICP +EE + +V++ L + +S+ + +HG+M +K +M+ F G ++ Sbjct: 473 VICPMVEESEMIEAENVLDYAKKLRKELPASVTVEYLHGKMKGREKNRIMERFAAGEIQV 532 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 L++TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG S CI++ + + + Sbjct: 533 LVSTTVIEVGVNVPNATVMMIENAERFGLAQLHQLRGRVGRGSSQSYCIMV-NCSDEEGT 591 Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 RL +L + DGF IA EDLK R G+I G++QSG +F +A ++L+ ++ Sbjct: 592 LERLDILNRSNDGFYIASEDLKLRGPGDIFGMRQSGDMEFKLADIFTDANILKSVSEEVN 651 Query: 665 HILTQDPDL 673 +L DP+L Sbjct: 652 RLLDGDPEL 660 >gi|184155717|ref|YP_001844057.1| ATP-dependent DNA helicase RecG [Lactobacillus fermentum IFO 3956] gi|183227061|dbj|BAG27577.1| ATP-dependent DNA helicase RecG [Lactobacillus fermentum IFO 3956] Length = 678 Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 220/632 (34%), Positives = 348/632 (55%), Gaps = 20/632 (3%) Query: 43 DLLFYHPSSFIDRHYRP-KISEISEERIVTITGYISQH---SSFQLQKRRPYKILLNDGT 98 DLL ++PS + D + P ++ +++ VT+ G + S + ++ R L+ Sbjct: 32 DLLTHYPSRYDD--FAPTDLTVAKDKQKVTVKGTVVSEPLMSRYGYRRSRMSFRLVVGQA 89 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 G + +++F + LK +TV G + +I+ + D + A Sbjct: 90 GVVNVVYFNQP--YLKQQVEPNHDVTVLGTWDAPRQQILGTK-----LVAADSKAEAVGA 142 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 Y + +K+I +A + V+ + L Q+ E +H P D Sbjct: 143 TYPANKHVRQATLRKLIRQAFDQYQNVIATLLPISLRQRYQLMERREMIKQMHFP---TD 199 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 A+ A++E ++ L +R+ +KE G+ I + ++ IPF T +Q Sbjct: 200 TTMAEAAKRTAAFEEFFLFELRLQAIRRANRKEEGLQILYNNAELRDFIKTIPFELTAAQ 259 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + + +I +D+ +M R+LQGDVGSGKT+VA IA+ AAV AG Q +MAP ILA QH Sbjct: 260 KRVVNEICRDLRAPYQMNRLLQGDVGSGKTIVAAIAVMAAVLAGYQVALMAPTEILAAQH 319 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 E + K T + V ++TG + + + I G ++I+GTHAL Q+ + Y L L Sbjct: 320 AEKLAKVFSGTHVEVALLTGALTAKQHDQLAKAIKAGDVNLIVGTHALIQNGVDYANLGL 379 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI+DEQHRFGV QR +L +K P VL MTATPIPRTL +T+ G++D+S I E PAGR+P Sbjct: 380 VIIDEQHRFGVNQRQQLREKGEHPDVLAMTATPIPRTLAITAYGEMDVSVIDELPAGRQP 439 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--T 515 IKT + N+ ++ L L G +AY + P IEE + + ++ + + EHF T Sbjct: 440 IKTTWLKGNQGQSALDFLDQQLRAGAQAYVVSPLIEESENLDVKNATDLYARFKEHFGPT 499 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + ++HGRM++ +K VM F+ G ++++ATTVIEVG+D +A++++I +A+ FGLAQ Sbjct: 500 YQVGLLHGRMNNDEKAVVMKDFQAGKVQVMVATTVIEVGVDNPNATVMLIYDADRFGLAQ 559 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG+ S C+L+ P + R+ + T DGF +A++DL+ R G++LG Sbjct: 560 LHQLRGRVGRGKRQSYCLLVADPKTDEGK-ARMETMVATTDGFEVAQKDLELRGAGDVLG 618 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 +QSGMP F + P +L+IAR DA ++L Sbjct: 619 DRQSGMPDFKVGDPVGDLKMLQIARADAGNLL 650 >gi|145593830|ref|YP_001158127.1| ATP-dependent DNA helicase RecG [Salinispora tropica CNB-440] gi|145303167|gb|ABP53749.1| DEAD/DEAH box helicase domain protein [Salinispora tropica CNB-440] Length = 733 Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 221/705 (31%), Positives = 361/705 (51%), Gaps = 62/705 (8%) Query: 19 VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78 VG K + L+ ++ A DLL++ P + +R I + VT+ + + Sbjct: 16 VGAKTARALATHLDLHTAG-----DLLYHVPRRYDERGEHTDIRSLDVGEQVTVLAQVQR 70 Query: 79 HSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 + +++RR ++ + DG+G L F+ + GR GK+ + ++R Sbjct: 71 TAVRPMRQRRGNLLEVTVGDGSGGALTLTFFGNQVWRERDLRPGRWGLFAGKVTEFRSRR 130 Query: 137 IMVHPHYIFHNSQDVN---------------FPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + P Y+ + D P+ A ++PT + + +++++ + Sbjct: 131 QLNGPEYVLLGAGDEGEVAASEEVEEFAGALIPVYPAAAAVPTWV-IARCVRVVLDTVD- 188 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 P P + + ++ + A +H P E AR RL +DE A Q+ L+ Sbjct: 189 PPADP--VPATVRTTRNLVGLGAALREVHRPSSK---EALYRARRRLKWDEAFAVQLTLV 243 Query: 242 LMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 ++Q P V +G + +P+ T Q +I D++ + M R+LQG Sbjct: 244 RRKRQAADRPARPRPVVDGGLRDAFDARLPYQLTAGQREVGTEIATDLASAHPMHRLLQG 303 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQ 349 +VGSGKT+VAL AM V+AGGQA ++AP +LA QHY I Sbjct: 304 EVGSGKTVVALRAMLQVVDAGGQAALLAPTEVLAAQHYRGILDLLGSLGRAGELDAAEHA 363 Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409 VE++TG++ RR+AL + G A I++GTHAL + + + L LV+VDEQHRFGV+ Sbjct: 364 TRVELVTGSLGAVARRRALGEVRSGVAGIVLGTHALLYEGVDFADLGLVVVDEQHRFGVE 423 Query: 410 QRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467 QR L KA PHVL+MTATPIPRT+ +T GD+++S +++ P GR PI + ++P Sbjct: 424 QRDALRAKADQPPHVLVMTATPIPRTVAMTVYGDLEVSTLSQLPRGRSPIASHVVPAAEK 483 Query: 468 ---IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS------- 517 +D RL+ ++ G +AY +CP+I + S+ + E + + Sbjct: 484 PAFLDRAWRRLREEVAAGHQAYVVCPRIGDGPSSDEEAAGEDDTTRRPPLAVTEVAPLLA 543 Query: 518 --------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 I ++HGR+ +K++VM SF G +L+ATTV+EVG+DV +A+++I+ +A+ Sbjct: 544 EGPLHGLRIGVLHGRLPAEEKDAVMRSFAAGDLDVLVATTVVEVGVDVPNATVMIVLDAD 603 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629 FG++QLHQLRGRVGRG C+L+ ++ RL + +T DGF +AE DL+QR+ Sbjct: 604 RFGVSQLHQLRGRVGRGSAAGLCLLVTEAMEGSSARERLDAVGSTTDGFTLAELDLEQRR 663 Query: 630 EGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDL 673 EG++LG QSG L L D+ L+ AR +A ++ +DP+L Sbjct: 664 EGDVLGATQSGRRSHLRLLSLLRDADLIRDARTEAIGLVEEDPEL 708 >gi|227890267|ref|ZP_04008072.1| DNA helicase RecG [Lactobacillus johnsonii ATCC 33200] gi|227849081|gb|EEJ59167.1| DNA helicase RecG [Lactobacillus johnsonii ATCC 33200] Length = 679 Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 220/675 (32%), Positives = 371/675 (54%), Gaps = 30/675 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67 LF P++ +GVG K + L+ + IN DLLFY P + D P + +I + Sbjct: 8 LFEPVTELKGVGAKTATALASLGINT-------IYDLLFYFPFRYDDLEIIP-LDQIEDG 59 Query: 68 RIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123 + V + G + S F +K R +K+ ++ +I ++ F+ + LKN G+++ Sbjct: 60 QKVLLKGMVVTDPFVSRFGYRKTRLSFKMKIDH---DIIMVNFFNQP-WLKNKVESGKEV 115 Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-L 182 V GK + + + + +D F +YS+ L + +K+I AL + Sbjct: 116 AVYGKYQVARQSL---SGFKLVAEKKDSGFA---PIYSVNRHLKQNKLQKLIDLALEETI 169 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 + E I + +K S +H+P+ + AR + + Q+ L Sbjct: 170 NEVGETIPASIREKYRLLSDRVLVEKMHHPKNENE---AKIARRSAIFRDFFLFQMQLAQ 226 Query: 243 MRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 + Q ++ G+ + ++++ IPF + Q+ + +I D+ K +M R+LQGD Sbjct: 227 LLSQRNEDAPGVEKKYDLAAVKELIEEIPFELSDDQKKVVNEIFADLHSKRQMRRLLQGD 286 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VA+ A+ AAV AG QA +M P ILAQQH+ I + + + V ++T + Sbjct: 287 VGSGKTVVAVFAIYAAVTAGYQAALMVPTEILAQQHFAKIDELLKPLGVRVALLTRDTKD 346 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 +++ +A G +++IGTHAL Q + + L LVI+DEQHRFGV QR L +K AP Sbjct: 347 LEKKEIYRELADGTINVVIGTHALIQKDVHFKNLGLVIIDEQHRFGVNQRNTLIKKGEAP 406 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 +L MTATPIPRTL LT GD+ +S+I P GRKP+ + +++ EV+ ++ L + Sbjct: 407 DILAMTATPIPRTLALTVYGDMAVSEIRHLPKGRKPVVSSWATSSKLREVLGLMRSQLDK 466 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540 G + Y + P I E ++S+ ++ + + +F ++ ++HG+M K +MDSF G Sbjct: 467 GFQIYVVTPLISESEKSDLKNAEDLQAKIAHYFKDENVVLLHGQMKGDQKNEIMDSFAAG 526 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+ S C+ + P Sbjct: 527 KINILVTTSVIEVGVDVPNANMMVIFNADRFGLSQLHQLRGRIGRGQTQSFCVFVSDPK- 585 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 ++ R++++ +T +GF +AEEDLK R EG++ G QSG+P+F + + L A+ Sbjct: 586 TEIGKKRMNIITSTSNGFKLAEEDLKLRGEGDVFGKAQSGLPQFQVGDVVNDYNALVTAQ 645 Query: 661 KDAKHILTQDPDLTS 675 K+A++++ DP L + Sbjct: 646 KEARNLIKSDPALAN 660 >gi|309810312|ref|ZP_07704150.1| putative ATP-dependent DNA helicase RecG [Dermacoccus sp. Ellin185] gi|308435740|gb|EFP59534.1| putative ATP-dependent DNA helicase RecG [Dermacoccus sp. Ellin185] Length = 729 Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 222/684 (32%), Positives = 357/684 (52%), Gaps = 62/684 (9%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRR---PYKILLNDGTG 99 DLL Y P +ID H E V +T + + ++Q R+ ++++D Sbjct: 32 DLLDYFPRRYIDAHAGSTFGEFELGEHVVLTARVETMTQRRMQTRKGSMANAVIVDDEGR 91 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF------ 153 + FF + +V G++ +G++ ++ + HP Y + D++ Sbjct: 92 RAAVTFFSAQPHY--SVLRPGKRALFSGQLGLFNKQLQLSHPQYTLMDDADMSVYPGSVV 149 Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213 P+ + V + T L++ L +++AL +P + +++ L + + A+ +H P Sbjct: 150 PVYKQVEKI-TNLNLTLSISTVLDALGEIP---DPLDEPLRARHGLVTTTRAYRGLHLPA 205 Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFS 272 D + RERL +DE QI L R + + E P + G + ++ +PF Sbjct: 206 SMADVQ---AGRERLRFDEAFTTQIVLAQRRHEARSEPSTPRVAKPGGLLERFDATLPFE 262 Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332 T+ Q + I +D+++ M R+LQG+VGSGKTLVAL AM A V++G QA ++AP + Sbjct: 263 LTEGQREVGEQIARDLAEPVAMHRLLQGEVGSGKTLVALRAMLAVVDSGAQAALLAPTEV 322 Query: 333 LAQQHYEFIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 LA QH ++ + V ++TG+M + R +AL I G+A I+IG Sbjct: 323 LAAQHAASMRAMLGPLAERGRLGGADDGTRVTLLTGSMSASARTQALLDIVSGEAGIVIG 382 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSL 440 THAL Q +++ L LV+VDEQHRFGV+QR L+ KA PHVL+MTATPIPRT+ +T+ Sbjct: 383 THALLQKHVEFADLGLVVVDEQHRFGVEQRAALSSKAHRPPHVLVMTATPIPRTVAMTAF 442 Query: 441 GDIDISKITEKPAGRKPIKTVIIPI---NRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497 GD+D+S + + P GR PI + ++P + ++ V ER+ + G++ Y + +I + E Sbjct: 443 GDLDVSTLRQLPRGRAPIVSHVVPTHVASWMNRVWERIAEECAAGRQVYVVAGRIGDGSE 502 Query: 498 S------------------------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 +++ L I ++HGR+ +K+ V Sbjct: 503 PVAPGLVDGPDAHGAGEGDAAARPIGVVDLIDEMRRLPALAGLRIGLMHGRLPAEEKDDV 562 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M F G +L+ATTVIEVG+DV +AS+I+I +A+ FGL+QLHQLRGRVGRGE C+ Sbjct: 563 MRRFGAGEVDVLVATTVIEVGVDVPNASMIVIVDADRFGLSQLHQLRGRVGRGEHGGLCL 622 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL--IAQPEL 651 L+ + ++ RL + T DGF IA+ DL R+EG++LG QSG L + + Sbjct: 623 LVTRNE-NPDTLERLRRVAETNDGFAIADLDLDLRREGDVLGAAQSGRRSSLDWLELTKA 681 Query: 652 HD-SLLEIARKDAKHILTQDPDLT 674 D +++E AR +A I+ DP LT Sbjct: 682 SDLAVIEAARTEAAAIVEADPSLT 705 >gi|257054977|ref|YP_003132809.1| ATP-dependent DNA helicase RecG [Saccharomonospora viridis DSM 43017] gi|256584849|gb|ACU95982.1| ATP-dependent DNA helicase RecG [Saccharomonospora viridis DSM 43017] Length = 722 Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 222/682 (32%), Positives = 359/682 (52%), Gaps = 56/682 (8%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP--YKILLNDGTGE 100 DLL ++P + R I+ + VT+ + + ++ R+ ++ + DG Sbjct: 31 DLLRHYPRRYARRGELTDIAGLEIGEHVTVLARVEHVTKKPMRSRKGSILEVTITDGQRR 90 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-------- 152 ++ FF +T + GR GK+ + + + +P Y ++ + Sbjct: 91 LSCAFFGNQTWRERE-LRPGRTGLFAGKVTMFRRTLQLANPEYELIDTDSTDPADGLSTV 149 Query: 153 -------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAE 204 P+ A LP+ ++ + E L P LPEW+ + P++ E Sbjct: 150 DDFLSQIIPVYPAAQGLPSWRIAKAVRQTL-ELLDEEPDPLPEWLRTE----HRLPTLFE 204 Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP--INVEGKIA 262 A + IH PR D + AR RL +DE LA Q+ +L R+ P G IA Sbjct: 205 ALHDIHRPRSDADLQ---AARTRLKWDEALAVQL-VLAQRRHSSGARPAPECPPRRGGIA 260 Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 + +PF T+ Q + I D++ K+ M R+LQG+VGSGKT+VAL AM V+AG Sbjct: 261 EAFDERLPFRLTEGQREVGEAISVDLAGKHPMNRLLQGEVGSGKTIVALRAMLQVVDAGR 320 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQN-----------TQIIVEIITGNMPQAHRRKALERI 371 QA ++AP +LA QH +++ + V ++TG++P R++AL Sbjct: 321 QAALLAPTEVLAAQHARSLREMLGDLARAGELGAPEVATRVTLLTGSLPARERKQALLDA 380 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA---TAPHVLLMTA 428 A G A I++GTHAL + + + L V++DEQHRFGV+QR L + T+PHVL+MTA Sbjct: 381 ASGAAGIVVGTHALLSEHVSFADLAFVVIDEQHRFGVEQRDALRTRGSEDTSPHVLVMTA 440 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKK 484 TPIPRT+ +T GD++ S + + P+GR PI T ++P +D +RL+ + +G + Sbjct: 441 TPIPRTVAMTVYGDLETSSLRQLPSGRSPISTTVVPAAEKPAWLDRAWQRLREEVDKGHQ 500 Query: 485 AYWICPQI-----EEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSF 537 AY +CP+I +K E +V++ L + I ++HGR+ +K++VM +F Sbjct: 501 AYVVCPRIGDEPPSDKTERPPIAVLDLAPELESGVLAGLRIGVLHGRLPGDEKDAVMRAF 560 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 G +L+ATTV+EVG++V +A+++II +A+ FG++QLHQLRGRVGRG+ C+L+ Sbjct: 561 AAGELDVLVATTVVEVGVNVPNATLMIIMDADRFGVSQLHQLRGRVGRGDVPGLCLLVTE 620 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLL 656 + RL+ +++T DGF +++ DL+ R+EG+ILG QSG L L D L+ Sbjct: 621 AVDGTAARARLAAVESTTDGFELSKLDLELRREGDILGAAQSGRRSGLKLLSLLRDEDLI 680 Query: 657 EIARKDAKHILTQDPDLTSVRG 678 +R+ A+ I+ DP LT G Sbjct: 681 ATSRRAAQRIVAADPGLTEYPG 702 >gi|116329238|ref|YP_798958.1| ATP-dependent DNA helicase, recG-related [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116121982|gb|ABJ80025.1| ATP-dependent DNA helicase, recG-related [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 724 Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 229/706 (32%), Positives = 377/706 (53%), Gaps = 58/706 (8%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 N L P++ +GVG + L+ I DLL + P ++D + + Sbjct: 15 NELLLPVTVIKGVGSSKAAALASI------GIHTLQDLLNFFPRRYLDCSLTDNVLLKTG 68 Query: 67 ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126 E + I + + + + R + + E + F+R + +F G + VT Sbjct: 69 ETVTLIVEVVDAYLAHGKKSR--FVVGAKTKNNERISIVFFRGVGFFQKIFQPGTTLVVT 126 Query: 127 GKIKKLKNRIIMVHPHY-IFHN----SQDVN---------------------------FP 154 G+++ + ++HP Y I N S +N P Sbjct: 127 GRLEYFRG-FQLIHPDYEILANAIKPSYTINSTNLDKKSRQQEPELAELPEMIHAGRIIP 185 Query: 155 LIEAVYSLPT-GLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 L + L + GL F+KI+ AL RL + E + +++++++ E++ IH P Sbjct: 186 LYSSGEVLKSQGLDSRGFRKILYLALERLKGGISEILPNEIVKRRNLIPREESYREIHFP 245 Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE----IGIPINVEGKIAQKILRN 268 D A+ RL Y+EL LL+ K+ ++E + P+ + + A + +N Sbjct: 246 ---TDEVSLDAAKYRLKYEELFY--FNLLIEHKKREREKIKRVLWPLP-KSETADSVRKN 299 Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 + F T+ Q SA++ I + + + +LQGDVGSGKTLV+L+ ++ Q ++A Sbjct: 300 LLFQLTEDQSSALRKIEELTKRDQPIAVLLQGDVGSGKTLVSLLTALRYMDNQIQVCMVA 359 Query: 329 PIGILAQQHYEFIKKYTQNTQII-VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILA+QHY+ I + N + +E++ G P+ +R + L RI G +IGTH++FQ Sbjct: 360 PTEILARQHYQTILSFLGNMPFLGIELLVGKEPKKNRYEKLYRIKKGDTLFVIGTHSVFQ 419 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + + + +L LVI+DEQH+FGV QR L K P +L MTATPIPRTL LT GD+D+ Sbjct: 420 EDVLFSELGLVIIDEQHKFGVDQRETLRSKGKNPDILAMTATPIPRTLCLTLYGDLDLLT 479 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 I KP GR PI+T NR + V + ++ +S G++ Y + P +EE ++ + +S + + Sbjct: 480 IKSKPKGRMPIQTKWFQENRREGVYKSIRKYVSSGRQCYIVYPLVEESEKVDLKSCIAAY 539 Query: 508 NSL-HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 L HE F+ + ++HG+M +K+ VM F ++L++TTVIEVGIDV +A++++I Sbjct: 540 EHLKHEIFSDFEVGLVHGKMETEEKDRVMQEFSKNRIQILVSTTVIEVGIDVPNATVMMI 599 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625 E+A+ FG++QLHQLRGRVGRG+E S CIL+ +++++ RL + N DGF ++E DL Sbjct: 600 EHADRFGISQLHQLRGRVGRGDEESFCILMTDSKVTEDAKVRLDAMVNFSDGFALSEIDL 659 Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671 + R GE++G++QSG+P F IA L+E+ R+DA IL +P Sbjct: 660 QLRGPGELMGVRQSGLPDFRIADLRKDSKLIELTREDA--ILFGNP 703 >gi|254519230|ref|ZP_05131286.1| ATP-dependent DNA helicase RecG [Clostridium sp. 7_2_43FAA] gi|226912979|gb|EEH98180.1| ATP-dependent DNA helicase RecG [Clostridium sp. 7_2_43FAA] Length = 676 Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 236/670 (35%), Positives = 371/670 (55%), Gaps = 29/670 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS-EE 67 +F +S+ +GVG K + L+K CG DLL Y P + +EI EE Sbjct: 3 IFMEISSLKGVGPKLTEKLNK---CGIFT---IYDLLLYFPRDYEFIKGDVAFNEIDGEE 56 Query: 68 RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 + + I + + + + D G I + ++ + +KN + + G Sbjct: 57 KQILTCRVIGYDRDVKTKTGKIISAIKFDYKGHIVIAKWFNQ-RYIKNSYRLNEFYDLVG 115 Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187 K K++ N + +++P +D I Y L LS + K+I + L + ++ + Sbjct: 116 KFKRVGNLLEVINPMV---GCRDAKKSEIIPKYPLKGDLSDRIITKLINQILDEV-IITD 171 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247 + K++L K + +A IH P+ D + A RL + EL + LLL++ + Sbjct: 172 NLPKEILDKYKMIGLDKAIREIHFPKGKGDLD---QAIIRLKFQELFTYSMKLLLLKNKL 228 Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 + GI ++ + ++PF+ T +Q +++IL+D K M R++QGDVGSGKT Sbjct: 229 RSNDGISFYWHEELTT-LKESLPFNLTDAQTKVVREILRDQKSKYSMNRLVQGDVGSGKT 287 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +VA+IAM ++ G QA +M P ILA QHYE K +N + VE++TG+ +R+ Sbjct: 288 IVAIIAMFNVIKNGFQASLMVPTEILANQHYEETLKILKNFNVEVELLTGSTSLKEKRRI 347 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 ERI+ G+ I+IGTHAL Q+ + + L LVI DEQHRFGV+QR KL K P VL+MT Sbjct: 348 KERISTGEPLIVIGTHALIQEDVDFTNLGLVITDEQHRFGVEQRSKLINKGRRPDVLVMT 407 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKK 484 ATPIPRTL L D+D+S I + P GRK I T N D ++ + L E G++ Sbjct: 408 ATPIPRTLALYMYSDLDVSIIDKLPPGRKKIDTRFYSEN--DRMLA-YDLALDEIRKGRQ 464 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA--IIHGRMSDIDKESVMDSFKNGTC 542 Y +CP IEE ++ SV + + L + +I+ I+HG+M +K+ +++ FK+ Sbjct: 465 VYIVCPLIEENEKMELNSVEKLYEELKDGVFKNISVEILHGKMKPKEKDELINLFKDDKI 524 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 K++I+TTVIEVG++V +AS++IIEN+E FGLAQLHQLRGRVGRG+ S CIL+ +K Sbjct: 525 KVIISTTVIEVGVNVPNASMMIIENSERFGLAQLHQLRGRVGRGQYESYCILIGK---AK 581 Query: 603 NSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 N T R+ ++ + DGF I+E+DLK R GE+ G++QSG ++A +L+ AR Sbjct: 582 NEKTRKRMKIMTESTDGFYISEQDLKLRGAGEMFGLRQSGDIGLVLADIYEDIDILKCAR 641 Query: 661 KDAKHILTQD 670 +A +++ + Sbjct: 642 YEANNLINSE 651 >gi|254303429|ref|ZP_04970787.1| ATP-dependent DNA helicase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323621|gb|EDK88871.1| ATP-dependent DNA helicase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 689 Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 227/608 (37%), Positives = 350/608 (57%), Gaps = 20/608 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK-RRPYKILLNDGTGEI 101 DL++Y P ++ DR KI E+ V + + + ++ ++ K +++DGTG + Sbjct: 38 DLIYYFPRAYDDRTNIKKIGELKFNEYVVLKANVMSVVNLTVRSGKKIVKAMVSDGTGIM 97 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVY 160 +L+F +K G + G+ KK +++P Y +F Q + I +Y Sbjct: 98 EILWF--GMPYIKKSLKIGEEYLFIGQTKK-SAVFQLINPEYKLFSGQQKASESEILPIY 154 Query: 161 SLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 S ++ + +K++ + L L E I K+L+++ A IH P K+ E Sbjct: 155 SSNKNITQNSLRKLVEKFLVNFLNYFEENIPKELIKEYKIMERKSAIKNIHYPVSMKEIE 214 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI--AQKILRNIPFSPTKSQ 277 A+ R A +ELL ++ +L R + VEGK ++ L + F+ T +Q Sbjct: 215 ---EAKRRFAIEELLILELGILKNRFIIENSNSKNYEVEGKKEKVKEFLSQLTFNLTNAQ 271 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + IK+I ++S + R++QGDVGSGKT+VA++ + E G Q +MAP ILA QH Sbjct: 272 KKVIKEIYDEISNGKIVNRLIQGDVGSGKTVVAMVMLIYMAENGYQGALMAPTEILANQH 331 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y IK+ + + VE++T ++ + + LE IA+G+ I+IGTH+L +D + + KL L Sbjct: 332 YLGIKERLEKIGLRVELLTSSIKGKKKTEILESIANGEVDIVIGTHSLIEDDVIFKKLGL 391 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +++DEQHRFGV QR KL +K ++L+M+ATPIPR+L L+ GD+D+S I E P GR P Sbjct: 392 IVIDEQHRFGVNQRNKLREKGFLGNLLVMSATPIPRSLALSIYGDLDLSIIDELPPGRTP 451 Query: 458 IKTVIIPINRIDEVIERLKVVL----SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 IKT I DE +E++ + ++G +AY++ P IE + +SV + + Sbjct: 452 IKTKWIA---NDEDLEKMYNFIYKKVNDGNQAYFVAPLIETSDKMALKSVDKVSEEIERK 508 Query: 514 FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 F++ I IIHG+M +K+ VM FKN +LIATTVIEVGIDV ++I+ I NAE FG Sbjct: 509 FSNKKIGIIHGKMKAKEKDEVMLKFKNKEYDILIATTVIEVGIDVPTSTIMTIYNAERFG 568 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 L+ LHQLRGRVGRG + S C L+ + ++NS RLS+++ TEDGF IAEEDLK R GE Sbjct: 569 LSALHQLRGRVGRGSKQSYCFLISNST-TENSKQRLSIMEKTEDGFRIAEEDLKLRNSGE 627 Query: 633 ILGIKQSG 640 I G++QSG Sbjct: 628 IFGLRQSG 635 >gi|227893319|ref|ZP_04011124.1| DNA helicase RecG [Lactobacillus ultunensis DSM 16047] gi|227864899|gb|EEJ72320.1| DNA helicase RecG [Lactobacillus ultunensis DSM 16047] Length = 681 Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 221/686 (32%), Positives = 368/686 (53%), Gaps = 28/686 (4%) Query: 7 NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 N LFAP++ +GVG K + + G+ DLLFY P + + P + +I + Sbjct: 7 NALFAPVTDLKGVGTKTA------ADLGSLGIYSIYDLLFYFPFRYDELQTLP-LDQIMD 59 Query: 67 ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122 + V + G ++ S F +K R +K+ ++ ++ ++ F+ + LKN G++ Sbjct: 60 GQKVMLKGIVATEPFVSRFGYKKTRLSFKMRIDH---DVIMVNFFNQP-WLKNKIEIGQE 115 Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + + GK + + ++ D P+ + V+L I L + Sbjct: 116 VAIYGKYNVARESLSAFK--FVAAKENDSGMAPIYPVNRHVKQKKLVNLINLAIDNFLDQ 173 Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 + ++P I +K E +H P+ ++ E A+ + E ++ L Sbjct: 174 VQDIVPLQIR----EKYRLLKDQEIIQKMHRPKNGQEAEI---AKRSAIFREFFIFELQL 226 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L+ K+ G P + K + ++PF + Q+ + +I DM +M R+LQG Sbjct: 227 TLLASHDGKQEGYPKKYDLKEIANLTNSLPFELSNDQKRVVNEIFADMHSPGQMRRLLQG 286 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA+ A+ AA+ AG QA +M P ILA QH++ I + + + V ++TGN Sbjct: 287 DVGSGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTK 346 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 RR+ + G +++IGTHAL Q ++ + KL LVI+DEQHRFGV QR L K Sbjct: 347 TLERREIYRELTDGTINVVIGTHALIQKNVIFKKLGLVIIDEQHRFGVGQRQALINKGDR 406 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 P +L MTATPIPRTL LT GD+ +S+I PAGRKPI + +++ EV + L Sbjct: 407 PDILAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISAWKTSSQMKEVYHLMHEQLD 466 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSL-HEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 +G + Y + P I E + + ++ E L H+ + ++HG+M K+ +M +F N Sbjct: 467 QGFQIYAVTPLITESETLDLKNAEELHKKLSHDFPDQKVVLLHGQMPGPKKDEIMTAFAN 526 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG S C+ + P Sbjct: 527 GEINILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGITQSYCVFVADPK 586 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 + + R+ ++ T DGF +AEEDLK R EG++ G QSG+P+F + + + L +A Sbjct: 587 -TDSGKARMKIIAATNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYNTLVVA 645 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILL 685 +K A+ ++ +DP+L+ ++++ +L Sbjct: 646 QKVARSLVKKDPELSDPEHKALKQVL 671 >gi|296119649|ref|ZP_06838207.1| ATP-dependent DNA helicase [Corynebacterium ammoniagenes DSM 20306] gi|295967532|gb|EFG80799.1| ATP-dependent DNA helicase [Corynebacterium ammoniagenes DSM 20306] Length = 698 Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 225/647 (34%), Positives = 365/647 (56%), Gaps = 64/647 (9%) Query: 66 EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 E +T++G ++ + ++ + ++D T +FF + + V + G ++ Sbjct: 60 EGSFITVSGTVTHIAKRPIRNGFVLNVTVDDA---YTAVFFNGVWQ--ERVLYPGIRVLF 114 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKII-VEALSR--- 181 +GK+K N + HP ++ ++ P E+ S G ++ + + VE L R Sbjct: 115 SGKLKFFHNTAQLQHPEFLI-----LDAPRGESAVSKRWGGTLKAIAQFVDVEELLRDRE 169 Query: 182 -LPVLPE------WIEKDLLQK--KSFPSIAEAFNI-----------IHNPRKAKDFEWT 221 LPV P W + K+ P I + +I IH PR E Sbjct: 170 WLPVYPASSTLKTWTIMAAIHHVLKTLPPIEDPLDISDLTFDMALRQIHEPRP----EGP 225 Query: 222 SPARERLAYDELLAGQIALLLMRKQFK--KEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 A +RL Y+E L + + L R+ + + +P +G A+ +L +PF T Q+ Sbjct: 226 QRAIDRLKYNEALGIGLVMALRRRDTRHWRAFALPPAPDGYRAE-MLAKLPFELTGGQQR 284 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 +KDI +D+S+ M R+LQG+VGSGKTLVA+ AM +AV+AG QA ++AP +LA QH Sbjct: 285 VLKDIDRDLSKAEPMSRLLQGEVGSGKTLVAVAAMLSAVDAGHQAALLAPTEVLAHQHAR 344 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 I + I + +++G+M A +R+AL I GQA I++GTHA+ Q++++++ L +V+ Sbjct: 345 SISAMLPD-DIRLTVLSGSMKVAEKRQALLDIVSGQADIVVGTHAIIQETVEFFSLGMVV 403 Query: 400 VDEQHRFGVQQRLKLTQKA---TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 VDEQHRFGV+QR L KA T PHVL+MTATPIPRT+ +T GD+++S + E P GRK Sbjct: 404 VDEQHRFGVEQRDSLRMKAPEGTFPHVLVMTATPIPRTIAMTVFGDLEVSSLHELPGGRK 463 Query: 457 PIKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 PI++ ++P + + ER++ ++ G +AY +CP+IE + V+E L + Sbjct: 464 PIQSSVVPEAKPTWVTRAFERIREEVAAGHQAYIVCPRIEGEG-----GVLELAEELQDG 518 Query: 514 FTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 + I ++HGRM D D+ M +F G +L++TTVIEVG+DV +A++++I +E+F Sbjct: 519 PLAGLRIMVLHGRMDDKDER--MAAFARGDIDVLVSTTVIEVGVDVANATVMLIRESENF 576 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKN--SYTRLSVLKNTEDGFLIAEEDLKQRK 629 G++QLHQLRGRVGRG S C L+H + N S+ R++ + T GF + E D++ R+ Sbjct: 577 GVSQLHQLRGRVGRGGNASLC--LFHTLAAPNSESFERIAKIAATSSGFELTELDMEYRR 634 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIAR--KDAKHILTQDPDLT 674 EG++LG +QSG + L +L + LL I R +DA ++ +P+L Sbjct: 635 EGDVLGTRQSGRQRTLQLL-DLSEDLLIIERAYEDAYQLVDDNPELA 680 >gi|241766968|ref|ZP_04764765.1| ATP-dependent DNA helicase RecG [Acidovorax delafieldii 2AN] gi|241362544|gb|EER58432.1| ATP-dependent DNA helicase RecG [Acidovorax delafieldii 2AN] Length = 768 Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 233/700 (33%), Positives = 355/700 (50%), Gaps = 74/700 (10%) Query: 40 RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99 R IDL + P + D + + + I ++ Q++ RR + ++DGTG Sbjct: 61 RDIDLALHLPLRYEDETRITPLRNARDGEVAQIEATVTS-CEVQMRPRRQLLVQVDDGTG 119 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEA 158 L FF K G ++ + G++K M+HP + + P + Sbjct: 120 TCELRFFSFYPSHQKT-LAAGARLRIRGEVKGGFWGRQMLHPAFRVAGGE---LPAALTP 175 Query: 159 VYSLPTGLSVDLFKKIIVEALSRL-----------PVLPEWIEKDLLQKKSFPSIAEAFN 207 VY GL ++ +V AL R P + + K+ LQ+ +F S+ EA Sbjct: 176 VYPTTAGLPQPYLRRSVVGALQRADLSETVPPGLEPPMGRILSKNGLQR-AF-SLREALT 233 Query: 208 IIHNPRKAKDFEWTS------PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI 261 +H+P D T+ PA +RL +ELLA Q++ R++ + + ++ Sbjct: 234 FLHHP--TPDVALTTLEDHSHPAWQRLKAEELLAQQLSQQQSRRERDRLRAPVLQPRPRV 291 Query: 262 AQ------KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315 Q ++L +PF T +Q ++I D+++ M R+LQGDVGSGKT+V+ +A A Sbjct: 292 GQALPLHEQLLAVLPFGLTAAQRRVGEEIAADLARPVPMHRLLQGDVGSGKTVVSALAAA 351 Query: 316 AAVEAGGQAVIMAPIGILAQQHYE----FIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 ++AG Q +MAP ILA+QH+ +++ T V + G + R L + Sbjct: 352 ICMDAGWQCALMAPTEILAEQHFAKMIGWLEPLLAATGRRVAWLVGGQKKKERAAMLALV 411 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-------------- 417 A G+A +++GTHA+ Q+ +Q+ L L I+DEQHRFGV QRL L +K Sbjct: 412 ASGEAALVVGTHAVIQEQVQFRNLALAIIDEQHRFGVAQRLALRKKLAEGIATGPAQGDA 471 Query: 418 ------------------ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 A PH+L+M+ATPIPRTL ++ D+D+S I E P GR PI Sbjct: 472 APSGGRDQRRGGAWGPSTAMEPHMLMMSATPIPRTLAMSYYADLDVSVIDELPPGRTPIV 531 Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-I 518 T +I +R EVIER+ ++ G++ YW+CP IEE + + + L E + Sbjct: 532 TKLIADSRKYEVIERIGAQVAAGRQVYWVCPLIEESEALDLSNATATRVDLSEALPGCMV 591 Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578 ++H RM +K++VM F +G +L++TTVIEVG+DV +AS+++IE+AE FGL+QLHQ Sbjct: 592 GLLHSRMPTAEKKAVMALFTSGQMGVLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQ 651 Query: 579 LRGRVGRGEEISSCILLYHPP----LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 LRGRVGRG S+C+LLY + + + RL + T DGF IA DL+ R GE L Sbjct: 652 LRGRVGRGAAASACVLLYATNDSGRVGETAKERLRAMAETNDGFEIARRDLEIRGPGEFL 711 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 G +QSG A +LLE AR A +L Q P L Sbjct: 712 GARQSGDALLRFADLATDTALLEWARATAPRMLDQFPALA 751 >gi|260663566|ref|ZP_05864456.1| ATP-dependent DNA helicase RecG [Lactobacillus fermentum 28-3-CHN] gi|260552107|gb|EEX25160.1| ATP-dependent DNA helicase RecG [Lactobacillus fermentum 28-3-CHN] Length = 678 Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 220/632 (34%), Positives = 350/632 (55%), Gaps = 20/632 (3%) Query: 43 DLLFYHPSSFIDRHYRP-KISEISEERIVTITGYISQH---SSFQLQKRRPYKILLNDGT 98 DLL ++PS + D + P ++ +++ VT+ G + S + ++ R L+ Sbjct: 32 DLLTHYPSRYDD--FAPTDLTVAKDKQKVTVKGTVVSEPLMSRYGYRRSRMSFRLVVGQA 89 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 G + +++F + LK +TV G + +I+ + +S+ + A Sbjct: 90 GVVNVVYFNQP--YLKQQVEPNHDVTVLGTWDAPRQQILGTK--LVVADSK---AEAVGA 142 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 Y + +K+I +A + V+ + L Q+ E +H P D Sbjct: 143 TYPANKHVRQTTLRKLIRQAFDQYQNVIATLLPISLRQRYQLMERREMIKQMHFP---TD 199 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 A+ A++E ++ L +R+ +KE G+ I + ++ IPF T +Q Sbjct: 200 TTMAEAAKRTAAFEEFFLFELRLQAIRRANRKEEGLQILYNNAELRDFIKTIPFELTAAQ 259 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + + +I +D+ +M R+LQGDVGSGKT+VA IA+ AAV AG Q +MAP ILA QH Sbjct: 260 KRVVNEICRDLRAPYQMNRLLQGDVGSGKTIVAAIAVMAAVLAGYQVALMAPTEILAAQH 319 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 E + K T + V ++TG + + + I G ++I+GTHAL Q+ + Y L L Sbjct: 320 AEKLAKVFSGTHVEVALLTGALTAKQHDQLAKAIKAGDVNLIVGTHALIQNGVDYANLGL 379 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI+DEQHRFGV QR +L +K P VL MTATPIPRTL +T+ G++D+S I E PAGR+P Sbjct: 380 VIIDEQHRFGVNQRQQLREKGEHPDVLAMTATPIPRTLAITAYGEMDVSVIDELPAGRQP 439 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--T 515 IKT + N+ ++ L L G +AY + P IEE + + ++ + + EHF T Sbjct: 440 IKTTWLKGNQGQSALDFLDQQLRAGAQAYVVSPLIEESENLDVKNATDLYARFKEHFGPT 499 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + ++HGRM++ +K VM F+ G ++++ATTVIEVG+D +A++++I +A+ FGLAQ Sbjct: 500 YQVGLLHGRMNNDEKAVVMKDFQAGKVQVMVATTVIEVGVDNPNATVMLIYDADRFGLAQ 559 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG+ S C+L+ P + R+ + T DGF +A++DL+ R G++LG Sbjct: 560 LHQLRGRVGRGKRQSYCLLVADPKTDEGK-ARMETMVATTDGFEVAQKDLELRGAGDVLG 618 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 +QSGMP F + P +L+IAR DA ++L Sbjct: 619 DRQSGMPDFKVGDPVGDLKMLQIARADAGNLL 650 >gi|255324609|ref|ZP_05365726.1| ATP-dependent DNA helicase RecG [Corynebacterium tuberculostearicum SK141] gi|255298515|gb|EET77815.1| ATP-dependent DNA helicase RecG [Corynebacterium tuberculostearicum SK141] Length = 710 Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 232/684 (33%), Positives = 371/684 (54%), Gaps = 78/684 (11%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 +LL ++P +I + + + +E IVT+TG I+ + K + L+ G I Sbjct: 33 ELLAHYPRDYIRHNKDVGLGDAAEGDIVTVTGTITGFTRHDSGKTTIINVQLD---GSII 89 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS--------QDVNFP 154 FF + + G+++ ++GK+K +N+ + P ++ ++ D P Sbjct: 90 ATFF--NANYVMRMLHRGQRVMMSGKLKFFRNQPQLQQPDFVEIDAFGRPDGELDDYRQP 147 Query: 155 LIEA--------------------------------VYSLPTGLSVDLFKKIIVEALSRL 182 E+ VY + ++ I LS+ Sbjct: 148 AAESGKKHRPKATGSLRNLSQFGRLDQLLLEREWIPVYPATSKVTSWYIMGAIHYVLSKT 207 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 P + E ++ ++ S+ +A IH P +A + A +RL Y+E L+ I L++ Sbjct: 208 PPIEEPLDYQMI-----ISLDKAVREIHEPGEAGPYR----AIQRLKYNEALS--IGLVM 256 Query: 243 MRKQFKKEI----GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 +Q E +P + G ++++ ++PF T+ Q I +I D+++ M+R+L Sbjct: 257 ALRQRDAEARTASTMPATL-GGYREELVSHLPFDLTEGQRRVISEIEDDLARPLPMMRLL 315 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QG+VGSGKT+VA AM AV+AG QA ++AP +LA QH I +V ++TG+ Sbjct: 316 QGEVGSGKTMVATCAMLQAVDAGTQAALLAPTEVLASQHAASIGTSVPEGVKVV-LLTGS 374 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 M A +R+AL I G A I+IGTHA+ QDS++++ L LV+VDEQHRFGV+QR L KA Sbjct: 375 MRTADKRQALLDIVSGDADIVIGTHAIIQDSVEFFNLGLVVVDEQHRFGVEQRDSLRLKA 434 Query: 419 T---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVI 472 +PHVL+MTATPIPRT+ +T GD+ +S +TE P GRKPI++ ++ R + + Sbjct: 435 REGLSPHVLVMTATPIPRTIAMTVFGDLAVSTLTELPGGRKPIQSAVVAEWRPTWVLRAL 494 Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH-FTS-SIAIIHGRMSDIDK 530 ER++ ++ G +AY +CP+IE K V+E L F IAI+HG+M + K Sbjct: 495 ERIREEVAHGHQAYIVCPRIEGKG-----GVLELAQQLENGPFKGLRIAILHGKMPN--K 547 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 + VM SF G +L++TTVIEVG+DV +A++++I +EHFG++QLHQLRGRVGRG S Sbjct: 548 DEVMTSFARGEIDILVSTTVIEVGVDVPNATVMLIRESEHFGVSQLHQLRGRVGRGGNAS 607 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 C+L + S+ R++ + T GF +AE DL+QR+EG+ILG QSG + L Sbjct: 608 VCLLHTTAADNTPSFRRITQIAQTSSGFELAELDLRQRQEGDILGTMQSGTHRTLRLLNL 667 Query: 651 LHD-SLLEIARKDAKHILTQDPDL 673 D ++E DA+ ++ ++P+L Sbjct: 668 ADDQDIVERTHTDARAMVLRNPEL 691 >gi|225027125|ref|ZP_03716317.1| hypothetical protein EUBHAL_01381 [Eubacterium hallii DSM 3353] gi|224955589|gb|EEG36798.1| hypothetical protein EUBHAL_01381 [Eubacterium hallii DSM 3353] Length = 682 Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 220/661 (33%), Positives = 351/661 (53%), Gaps = 22/661 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP-KISEISEERIV 70 P+ +G+G+K L+K+ + +D L +H + P ISEI + Sbjct: 13 PVREIKGIGEKTEKLLAKL-------DIETVDQLVHHYPRCYTTYPEPISISEIKTGQRC 65 Query: 71 TITGYISQHSSFQLQKRRPYKI---LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 +I I+ S L+ R K+ L+ D +G++ + +F L+N +G + TG Sbjct: 66 SIEAEIA--SPIHLKTVRKLKLCTGLIADVSGQLFVRWF--NMPYLRNTLKQGEQWIFTG 121 Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187 R+++ P Y + +Y L TGLS +K A + E Sbjct: 122 TPIYKDGRLMLEQPEYCKREKYLQLMETFQPIYPLTTGLSNKTVQKAQAAAFE-MYREEE 180 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247 ++ + + + A +H P E A++R+ +DE AL L++ + Sbjct: 181 YLPETVRNYYDLEPVNTALREVHFPTGT---EHLMEAKKRIIFDEFFRFFSALELVKDRE 237 Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 ++ + I + ++ + N+P+ T +Q+ + +I QD S M R+LQGDVGSGKT Sbjct: 238 EQALNHYIIPMEEPVKRFVENLPYPLTGAQKKVLNEIRQDFSDTMAMNRLLQGDVGSGKT 297 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +VA+ AM AAV AG QA +MAP +LA+QHY+ K I V ++TG+ +R+ Sbjct: 298 IVAMTAMYAAVLAGYQAALMAPTEVLAEQHYQNFVKLLSPLGITVALLTGSTKAKEKREI 357 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 A G+ I+IGTHA+ QD + + L ++ DEQHRFGV+QR +K PHVL+M+ Sbjct: 358 KAACASGEIQILIGTHAVIQDDVAFDNLAFIVTDEQHRFGVKQRDAFMKKGKDPHVLVMS 417 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL + D+D+S + E PA R PIK ++ + E ++ ++ G +AY Sbjct: 418 ATPIPRTLGIILYRDLDVSIMNEMPASRLPIKNSVVGTSYRPAAWEFIRKQVALGHQAYV 477 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLL 545 ICP IEE ++ + +V E L + SI + ++G M +K +M+ F ++L Sbjct: 478 ICPMIEENEKMDLENVEEYARMLSQALPPSITVEALNGHMRPAEKNDIMERFSKNEIQIL 537 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 ++TTV+EVGIDV +A++++IENAE FGLAQLHQLRGRVGRG+ S C+ + + + Sbjct: 538 VSTTVVEVGIDVPNATVMLIENAERFGLAQLHQLRGRVGRGKAQSYCVFISGSE-KEEAM 596 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665 RLS++ ++ DGF IA EDLK R GE G+KQSG F + + +L++A + + Sbjct: 597 ERLSIIGHSNDGFEIANEDLKLRGPGEFFGVKQSGTMNFALGDIYSNADILKMASEAVDY 656 Query: 666 I 666 + Sbjct: 657 L 657 >gi|227515691|ref|ZP_03945740.1| DNA helicase RecG [Lactobacillus fermentum ATCC 14931] gi|227085939|gb|EEI21251.1| DNA helicase RecG [Lactobacillus fermentum ATCC 14931] Length = 678 Score = 347 bits (891), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 220/632 (34%), Positives = 350/632 (55%), Gaps = 20/632 (3%) Query: 43 DLLFYHPSSFIDRHYRP-KISEISEERIVTITGYISQH---SSFQLQKRRPYKILLNDGT 98 DLL ++PS + D + P ++ +++ VT+ G + S + ++ R L+ Sbjct: 32 DLLTHYPSRYDD--FAPTDLTVAKDKQKVTVKGTVVSEPLMSRYGYRRSRMSFRLVVGQA 89 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 G + +++F + LK +TV G + +I+ + +S+ + A Sbjct: 90 GVVNVVYFNQP--YLKQQVEPNHDVTVLGTWDAPRQQILGTK--LVVADSK---AEAVGA 142 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 Y + +K+I +A + V+ + L Q+ E +H P D Sbjct: 143 TYPANKHVRQTTLRKLIRQAFDQYQNVIATLLPISLRQRYQLMERREMIKQMHFP---TD 199 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 A+ A++E ++ L +R+ +KE G+ I + ++ IPF T +Q Sbjct: 200 TTMAEAAKRTAAFEEFFLFELRLQAIRRANRKEEGLQILYNNTELRDFIKTIPFELTAAQ 259 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + + +I +D+ +M R+LQGDVGSGKT+VA IA+ AAV AG Q +MAP ILA QH Sbjct: 260 KRVVNEICRDLRAPYQMNRLLQGDVGSGKTIVAAIAVMAAVLAGYQVALMAPTEILAAQH 319 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 E + K T + V ++TG + + + I G ++I+GTHAL Q+ + Y L L Sbjct: 320 AEKLAKVFSGTHVEVALLTGALTAKQHDQLAKAIKAGDVNLIVGTHALIQNGVDYANLGL 379 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI+DEQHRFGV QR +L +K P VL MTATPIPRTL +T+ G++D+S I E PAGR+P Sbjct: 380 VIIDEQHRFGVNQRQQLREKGEHPDVLAMTATPIPRTLAITAYGEMDVSVIDELPAGRQP 439 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--T 515 IKT + N+ ++ L L G +AY + P IEE + + ++ + + EHF T Sbjct: 440 IKTTWLKGNQGQSALDFLDQQLMAGAQAYVVSPLIEESENLDVKNATDLYARFKEHFGPT 499 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + ++HGRM++ +K VM F+ G ++++ATTVIEVG+D +A++++I +A+ FGLAQ Sbjct: 500 YQVGLLHGRMNNDEKAVVMKDFQAGKVQVMVATTVIEVGVDNPNATVMLIYDADRFGLAQ 559 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG+ S C+L+ P + R+ + T DGF +A++DL+ R G++LG Sbjct: 560 LHQLRGRVGRGKRQSYCLLVADPKTDEGK-ARMETMVATTDGFEVAQKDLELRGAGDVLG 618 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 +QSGMP F + P +L+IAR DA ++L Sbjct: 619 DRQSGMPDFKVGDPVGDLKMLQIARADAGNLL 650 >gi|254392467|ref|ZP_05007647.1| ATP-dependent DNA helicase RecG [Streptomyces clavuligerus ATCC 27064] gi|197706134|gb|EDY51946.1| ATP-dependent DNA helicase RecG [Streptomyces clavuligerus ATCC 27064] Length = 741 Score = 347 bits (891), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 228/709 (32%), Positives = 363/709 (51%), Gaps = 88/709 (12%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGE 100 DLL ++P + +R +++E+ + VT+ ++ +F + + ++ + DG+G Sbjct: 28 DLLHHYPRRYEERGRLTRLAELPLDEEVTVVAQVADARVHTFNGGRGKRLEVTITDGSGR 87 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI---------------- 144 + L+FF R G + G++ ++ + HP Y Sbjct: 88 LQLVFFGRGVHKPHQELLPGTRAMFAGRVSVFNRKLQLAHPSYAKLGTGDGADGGGGHDD 147 Query: 145 ------FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198 + + +P + + S +VD EA LP L + + Sbjct: 148 GTAVDSWAGALIPIYPACKGMESWKIAKAVDAVLPRRTEATDPLP-------PALREGRG 200 Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI--- 255 F + EA +H PR D E AR+RL +DE Q+AL R++F + +P Sbjct: 201 FVPLPEALLKVHRPRTKADIEA---ARQRLKWDEAFVLQVAL--ARRRFA-DTQLPAVAR 254 Query: 256 -NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 G I +PF+ T+ Q +I D++ ++ M R+LQG+VGSGKTLVAL AM Sbjct: 255 RPAPGGILDAFDARLPFTLTEGQRKVTGEIFGDLATEHPMHRLLQGEVGSGKTLVALRAM 314 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-------------TQIIVEIITGNMPQ 361 A V+AGGQA ++AP +LAQQH+ + + + T+++V +TG+M Sbjct: 315 LAVVDAGGQAAMLAPTEVLAQQHHRSVVEMMGDLADGGTLGAPDGATKVVV--LTGSMGA 372 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TA 420 A RR AL + G+A I+IGTHAL +D +Q++ L LV+VDEQHRFGV+QR L K Sbjct: 373 AARRAALLDLVTGEAGIVIGTHALIEDKVQFHDLGLVVVDEQHRFGVEQRDALRSKGKQP 432 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLK 476 PH+L+MTATPIPRT+ +T GD++ S + + PAGR PI + ++P + ER++ Sbjct: 433 PHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPARDKPHFLARAWERVR 492 Query: 477 VVLSEGKKAYWICPQIEEKKESNFR------------------------SVVERFNSLHE 512 + +G +AY +CP+I +++E +V+E L Sbjct: 493 EEVGKGHQAYVVCPRIGDEEEGTGAAAKSGRKAADEEAQAADAEKRPPLAVLEIAEELER 552 Query: 513 HFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 + I ++HGRM DK++VM F G +L+ATTVIEVG++V +A+ ++I +A+ Sbjct: 553 GPLAGLRIGVLHGRMPPEDKDAVMRRFTAGEVDVLVATTVIEVGVNVPNATAMVIMDADR 612 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630 FG++QLHQLRGRVGRG C+L+ P + + RL + T DGF ++ DL+QR+E Sbjct: 613 FGVSQLHQLRGRVGRGSAPGLCLLVTEMPAASPARARLGAVAATLDGFELSRIDLEQRRE 672 Query: 631 GEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTSVRG 678 G++LG QSG L + D ++ AR++A + DP+L G Sbjct: 673 GDVLGQAQSGARSSLRMLAVIEDEEVIAAAREEAVRTVRADPELEHTPG 721 >gi|111023475|ref|YP_706447.1| ATP-dependent DNA helicase [Rhodococcus jostii RHA1] gi|110823005|gb|ABG98289.1| ATP-dependent DNA helicase [Rhodococcus jostii RHA1] Length = 752 Score = 347 bits (891), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 229/717 (31%), Positives = 370/717 (51%), Gaps = 78/717 (10%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99 DLL ++P + + + E +TI ++ + ++ K RP K++L+ T Sbjct: 31 DLLRHYPHRYASQGRELAEKDPPEGEHITIIARVTSAAVVKM-KNRPGSMLKVVLSTDTQ 89 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF-----HNSQD--VN 152 + + FF + +K+V G + +G +K + + + HP Y+ S+D VN Sbjct: 90 NVDVTFF--SPQKVKHVIKPGVRAMFSGTVKYFRQKWSLTHPSYLILPEPRAGSEDPVVN 147 Query: 153 FPLIEAVYSLP--------TGLSVDL---------------------FKKIIVEALSRLP 183 I L G VD+ K + + L +L Sbjct: 148 VGRIRGAGDLAGIARASQEAGAGVDMSVFDRALIPLYPATRDVESWTIMKCVRQILDQLD 207 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 + + + +++ ++ + EA +H P +D E A +RL +DE A Q+ L Sbjct: 208 RVDDPLPENIRAERDLIGLDEALRSVHLPDTREDVE---NAHDRLRFDEATALQLVLARR 264 Query: 244 RKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 R + + V G IA + +PF T Q + +I D++Q + M R+LQG+V Sbjct: 265 RHDNAERVAPECPPVPGGIADVFEKMLPFQLTDGQHAVADEISADLAQPHPMSRLLQGEV 324 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQII 351 GSGKT+VAL AM V+AG Q ++AP +LA QH ++ Sbjct: 325 GSGKTIVALRAMLQVVDAGYQCALLAPTEVLATQHARSLRAMLGSLATAGELGAHEKATR 384 Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411 V ++TG+MP A +R AL G A I+IGTHAL QD+++++ L +V+VDEQHRFGV+QR Sbjct: 385 VALLTGSMPVAAKRTALNEAITGDAGIVIGTHALIQDNVEFFNLGMVVVDEQHRFGVEQR 444 Query: 412 LKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467 +L +A +PH+L+MTATPIPRT+ +T LGD+++S + + P GR PIK+ ++P ++ Sbjct: 445 DRLRSRAREGLSPHLLVMTATPIPRTIAMTVLGDLEVSTLRQLPKGRSPIKSSVVPASQK 504 Query: 468 ---IDEVIERLKVVLSEGKKAYWICPQIEE-----------KKESNFRSVVERFNSLHEH 513 + ER++ ++EG++AY +C +I + +K +S VE F L Sbjct: 505 PQWVARAWERIREDVAEGRQAYVVCSRIGDGEKGDGEDAFDEKAPETKSAVEVFEELSGS 564 Query: 514 FTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 + ++HGR+ +K++VM F G +L+ TTV+EVG+DV +A+I++I +A+ F Sbjct: 565 IMPDLRVGLLHGRLPADEKDAVMRDFTAGDIDVLVCTTVVEVGVDVPNATIMVIVDADRF 624 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631 G++QLHQLRGRVGRG CIL+ +Y RLS + +T DGF +A+ DL R+EG Sbjct: 625 GVSQLHQLRGRVGRGRHQGLCILVTEMNPGGPAYERLSNVASTNDGFELAQLDLATRREG 684 Query: 632 EILGIKQSGMPKFLIAQPEL-HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687 +ILG QSG L L H+ ++ A + A+ ++ DP L + G S + L Sbjct: 685 DILGAAQSGTTSTLRLLSLLGHEDVIAAASEFARSVIADDPRLDNHPGLSAMVTSAL 741 >gi|298245570|ref|ZP_06969376.1| ATP-dependent DNA helicase RecG [Ktedonobacter racemifer DSM 44963] gi|297553051|gb|EFH86916.1| ATP-dependent DNA helicase RecG [Ktedonobacter racemifer DSM 44963] Length = 913 Score = 347 bits (891), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 229/692 (33%), Positives = 361/692 (52%), Gaps = 54/692 (7%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKI-LLNDGTGEI 101 DLLFY P D I ++ + T G I + + + + + I ++D +G++ Sbjct: 223 DLLFYFPREHRDYSKITPIVDVPFNEVSTTMGLIWEVTVKRTRGNQSRTIATISDDSGKL 282 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI-IMVHPHYIFHNSQDVNFPLIEAVY 160 +F + + +G I +TGK ++ N++ V H + + +N + Y Sbjct: 283 YATWFNQPYLQKQLERAQGCYIVITGKKQRFGNKVEFNVQSHELPEQNDLLNTGRLVPTY 342 Query: 161 SLPTGLSVDL---FKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 +L GLS + F K +V+ +++ +P+ + + ++EA IH P ++ Sbjct: 343 ALTAGLSAKVLRRFTKWVVDRYAQM--VPDHLPTPIRDMGQLIPLSEAVAKIHYPDNEEE 400 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKE---------------IGIPIN------ 256 + A RLA+DEL Q+ + R++++ E IG P + Sbjct: 401 RQR---AYRRLAFDELFMIQLGMQERRERWQFEAPQGNALTIYPDKIFIGPPADESQDTP 457 Query: 257 -VEGKIAQKI----------------LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 G I +PF T +Q I +I DM++ M R+LQ Sbjct: 458 PTSGTTISNIGIGSTLWSVTATDAPLEATLPFHYTDAQCRVINEIFIDMAKSKPMCRLLQ 517 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG+GKT VA + AV G Q IMAP +LA+QH I K + I ++TG+ Sbjct: 518 GDVGAGKTAVAAAGLFMAVLNGSQGAIMAPTELLAEQHARSISKMLEPFGIRTVLLTGSQ 577 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + R + + G+A + IGTHAL QD +++YKL LVIVDEQHRFGV+QR L +K Sbjct: 578 RASERARGRAMLESGEAAVAIGTHALIQDDVKFYKLGLVIVDEQHRFGVEQRDALRKKGY 637 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 PH+L+MTATPIPRTL LT GD+D+S I + P GR+ I + R E + ++ + Sbjct: 638 HPHMLVMTATPIPRTLSLTLYGDLDVSVIDQLPPGRQKIISRWRTGARRAESYDTIRQQV 697 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSF 537 EG +A+ ICP IEE + ++ + L T + ++HG M +K+ VM F Sbjct: 698 EEGHQAFIICPLIEESESLQVKAATTEYERLQREVFPTLRLGLLHGAMKPAEKDQVMHRF 757 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 ++ +L+AT+VIEVGIDV +A++++IE+A+ FGL+QLHQ RGRVGRG+ S C +L Sbjct: 758 RDHKLDILVATSVIEVGIDVPNATVMVIEDADRFGLSQLHQFRGRVGRGKHQSYCYVLSE 817 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LL 656 S RL V + +DGF +AEEDL+ R G+ +G++QSGMP+ IA +L D+ ++ Sbjct: 818 -DAGAQSQERLGVFEEIDDGFKLAEEDLRLRGPGDFIGVRQSGMPEMRIA--DLSDTRMI 874 Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLY 688 E+ R+ A + DP L ++R ++L+ Sbjct: 875 ELTRRIAASVWAGDPYLRKPEHTALRERMHLF 906 >gi|87307710|ref|ZP_01089853.1| ATP-dependent DNA helicase RecG [Blastopirellula marina DSM 3645] gi|87289324|gb|EAQ81215.1| ATP-dependent DNA helicase RecG [Blastopirellula marina DSM 3645] Length = 697 Score = 347 bits (890), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 241/701 (34%), Positives = 389/701 (55%), Gaps = 29/701 (4%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 L L P+ +GVG + + L+K+ N A +DLLF+ P + D I+++ Sbjct: 10 LERLRTPVQFLKGVGPQRAEKLAKL-NIFTA-----LDLLFFFPRDYQDVRDVIPIAQLV 63 Query: 66 EERIVTITGYISQHSSFQLQKRRPYKILLND--GTGEITLLFFYRKTEMLKNVFFEGRKI 123 E+ I ++ G + + S L+ P + +L + E L + L+ F EGR++ Sbjct: 64 EDEIASVIGTVEEIS---LRNTAPGRSVLGVLIRSDEQYLRAIWFNQPFLRRRFSEGRRV 120 Query: 124 TVTGKIKKLKNRIIMVHP-HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182 ++GK R M HP + + Q+ I VYSL G+ ++++ A+ Sbjct: 121 LMSGKPTLNGLRWEMAHPIAEVLEDEQEEIGGKILPVYSLTEGIRQGAMRRLVHHAVEDY 180 Query: 183 -PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 + E + + L + + +A IH P D + + A+ R Y ELL Q+AL Sbjct: 181 RKEIEEVLPQTFLDEHGLMPVHDAILQIHAP---DDHDARAAAQRRFIYQELLVLQLALA 237 Query: 242 LMRKQF---KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 + R Q + + IPI+ G+I ++I R IPF T++Q A+ ++ +D++ M R+L Sbjct: 238 VRRYQLTSNRHSMSIPID--GRIDERIRRLIPFELTEAQNQAVAEVTRDLALDVPMNRLL 295 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKT+VAL AM AAV AG QA +MAP +LA+QH + K ++ V ++TG Sbjct: 296 QGDVGSGKTIVALYAMLAAVAAGAQAALMAPTEVLARQHVRTLGKLLAKAKVNVGLLTGT 355 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + + RR+ L ++A G+ +++GT A+ I+++KL LV++DEQH+FGV+QR +L Sbjct: 356 LTEKQRRELLAQLAAGEVQLLVGTQAIIASEIEFHKLGLVVIDEQHKFGVKQRGQLRGAG 415 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PH L+MTATPIPRT+ ++ GD+D+S I E P GR+P+ T I ++ + + Sbjct: 416 LDPHYLVMTATPIPRTIAMSLFGDLDVSSIREAPPGRQPVHTYIGTEEEREKWWKFFRKK 475 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLH----EHFTSSIAIIHGRMSDIDKESVM 534 L EG++ Y + P ++E ++ S + +L E F + ++HGRMS DKE M Sbjct: 476 LREGRQGYVVAPLVDESSSADSASAEQLLETLSNGELEEF--RLGLLHGRMSAEDKEETM 533 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F+ G + L++T+VIEVG+DV +A ++ IE E FGLAQLHQLRGR+ RG + + Sbjct: 534 RKFRAGEIQALVSTSVIEVGVDVPNAVVMTIEGGERFGLAQLHQLRGRISRGSH-AGFLC 592 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 ++ P + +S RL L + DGF +AE D + R G++ G KQ GMP IA + Sbjct: 593 IFADPKTDHSRERLEALAKSNDGFELAELDFRLRGPGDLFGFKQHGMPPLRIADLQRDGD 652 Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695 LLE AR DA+ I+ DP L + + +R ++++ +Y ++ + Sbjct: 653 LLEKARADARSIIAADPALADAKWEKLRRMVFI-RYGKSLE 692 >gi|226324789|ref|ZP_03800307.1| hypothetical protein COPCOM_02575 [Coprococcus comes ATCC 27758] gi|225207237|gb|EEG89591.1| hypothetical protein COPCOM_02575 [Coprococcus comes ATCC 27758] Length = 595 Score = 347 bits (890), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 210/562 (37%), Positives = 325/562 (57%), Gaps = 17/562 (3%) Query: 43 DLLFYHPSSFIDRHYRP-KISEISEERIVTITGYISQHSSFQLQKR-RPYKILLNDGTGE 100 DLL Y+P + D + P + E+ E +I T+ G I KR + + D TG Sbjct: 31 DLLRYYPRGY-DVYEEPVSVGELEEGKISTVKGVIYGRVQVGGGKRMQITTAYVKDLTGT 89 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFH--NSQDVNFPLIEA 158 + +++F + L+N +G + + G++ K+++IM HP +F +S D ++ Sbjct: 90 LKVIWF--RMPFLRNTLKQGMPVIIRGRVVSKKDQLIMEHPE-LFSPPDSYDKKCGTLQP 146 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 +Y L G++ + K + A+ L ++ + + KDL + A IH P +F Sbjct: 147 IYPLTAGMTNNAVAKAVKGAMEYLDLVSDDLPKDLRLRYHLAEYNYAIRGIHFPLDKAEF 206 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQ 277 ARERL ++E L +AL R++ ++ E G I +I + L N+P+ T +Q Sbjct: 207 ---YHARERLVFEEFLVFVLALRRTRERNERAENGFVIKRRSEI-DRFLANLPYELTGAQ 262 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + + I ++M K M R++QGDVGSGKT+VAL+A+ A G Q +MAP +LA+QH Sbjct: 263 KRVWEQIQEEMCGKLVMSRLIQGDVGSGKTIVALLALLLAALNGYQGAMMAPTEVLAKQH 322 Query: 338 YEFIKKYTQNTQIIV--EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 YE I + + QI V E++TG+M +R+A +RIA G+ I++GTHAL Q+ ++Y L Sbjct: 323 YESIIEMLEKYQIPVKTELLTGSMTAKEKREAYQRIAAGEVQIVLGTHALIQEKVEYQNL 382 Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 LV+ DEQHRFGV+QR L K PH+L+M+ATPIPRTL + GD+DIS I E PA R Sbjct: 383 ALVVTDEQHRFGVRQREALAGKGQIPHILVMSATPIPRTLAIILYGDLDISVIDELPANR 442 Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 PIK ++ + ++ ++EG++ Y ICP +EE + + +V++ L Sbjct: 443 LPIKNCVVDTSYRPTAYRFMQKQVAEGRQCYVICPMVEESEAMDAENVLDYAQLLQSEMG 502 Query: 516 SS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 IA +HGRM +K+ +M +F ++L++TTVIEVGI+V +A++I++ENAE FGL Sbjct: 503 DKIRIAALHGRMKQAEKDEIMGAFAKNEIQVLVSTTVIEVGINVPNATVIMVENAERFGL 562 Query: 574 AQLHQLRGRVGRGEEISSCILL 595 AQLHQLRGRVGRG S CI + Sbjct: 563 AQLHQLRGRVGRGRHQSYCIFM 584 >gi|239928711|ref|ZP_04685664.1| ATP-dependent DNA helicase RecG [Streptomyces ghanaensis ATCC 14672] gi|291437035|ref|ZP_06576425.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672] gi|291339930|gb|EFE66886.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672] Length = 740 Score = 347 bits (890), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 228/718 (31%), Positives = 371/718 (51%), Gaps = 71/718 (9%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ---HSSFQLQKRRP----YKILLN 95 DLL ++P + +R ++++ + VT+ ++ H+ + R ++ + Sbjct: 34 DLLHHYPRRYEERGQLTHLADLPMDEHVTVVAQVADARLHTFASAKAPRGKGQRLEVTIT 93 Query: 96 DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQD---- 150 DG+G + L+FF G + GK+ R+ + HP Y + D Sbjct: 94 DGSGRLQLVFFGAGVHKPHKELLPGTRALFAGKVSVFNRRLQLAHPAYELLRGDGDGAEE 153 Query: 151 -------VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203 P+ A L + + ++ A + LPE L + + + Sbjct: 154 TVESWAGALIPIYPATAKLESWKIGKALQTVLPSAREAVDPLPE----SLREGRGLVPLP 209 Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK--EIGIPINVEGKI 261 EA IH P+ D E AR RL +DE Q+AL R + + +G + Sbjct: 210 EALLKIHRPQTKADIE---DARARLKWDEAFVLQVALARRRHADAQLPAVARRPGPDGLL 266 Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321 A R +PF+ T+ Q+ +I D++ ++ M R+LQG+VGSGKT+VAL AM A V+AG Sbjct: 267 AAFDDR-LPFTLTEGQQKVSAEIFADLATEHPMHRLLQGEVGSGKTMVALRAMLAVVDAG 325 Query: 322 GQAVIMAPIGILAQQHYEFIKKY------------TQNTQIIVEIITGNMPQAHRRKALE 369 GQA ++AP +LAQQH+ + + +N +V ++TG+M A RR AL Sbjct: 326 GQAAMLAPTEVLAQQHHRSVTEMMGELAEGGMLGGAENATKVV-LLTGSMGAAARRHALL 384 Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTA 428 +A G+A I+IGTHAL +D +Q++ L LV+VDEQHRFGV+QR L K PH+L+MTA Sbjct: 385 DLATGEAGIVIGTHALIEDKVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTA 444 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKK 484 TPIPRT+ +T GD++ S + + PAGR PI + ++P + ER++ + G + Sbjct: 445 TPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAADKPHFLTRAWERVREEVVGGHQ 504 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTS---------------------SIAIIHG 523 AY +CP+I ++++ ++ ++ S + + ++HG Sbjct: 505 AYVVCPRIGDEEDDPKKAGRKKPASPEDEAEKRPPLAVLDVADQLAKGPLHGLRVEVLHG 564 Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583 RM DK++VM F G +L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQLRGRV Sbjct: 565 RMPPDDKDAVMRRFAAGETDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRV 624 Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643 GRG C+L+ P + + RL+ + +T DGF ++ DL+QR+EG++LG QSG Sbjct: 625 GRGSAPGLCLLVTEMPEASAARQRLNAVASTLDGFELSRIDLEQRREGDVLGQAQSGTRS 684 Query: 644 FLIAQPELHD-SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 L + D ++ AR++A ++ DP+L R ++R L E Q++ G Sbjct: 685 SLRVLAVIDDEEIIAEARREATAVVAADPELE--RLPALRTALDALLDEEREQYLEKG 740 >gi|328675493|gb|AEB28168.1| ATP-dependent DNA helicase RecG [Francisella cf. novicida 3523] Length = 679 Score = 347 bits (889), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 222/644 (34%), Positives = 365/644 (56%), Gaps = 32/644 (4%) Query: 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75 F GVG+ L+K N + N DLL P + D I ++ + I G Sbjct: 6 FNGVGEATVRALAKY-NLHSPN-----DLLTIFPKDYKDTRVVTPIDQLVAGKKSLIQGR 59 Query: 76 ISQHSSFQLQKRRPYKILLNDGTG---EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 I+ + +++ ++ + ++D TG I F+ + ML+ + + GK++ Sbjct: 60 IT-NLTYKKFGKKFLRFNVSDSTGFCSAILFKFYPNQITMLE----KSEYVRCYGKVELA 114 Query: 133 KNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191 N M+HP + + + + VY L + L K+I++ L V I Sbjct: 115 LNPQ-MIHPEWAVVKDGECALKQGFSPVYRLKK-IPDRLISKMIMKMLQDNKV-ENIIPA 171 Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251 LL+K + S ++A +H D ++ A+ + ++E+LA ++A + K K Sbjct: 172 KLLRKFNLISFSDALYYVHGLTNHIDEKYLHKAKFSIKFEEMLAYKLAEQNICKNTVKSQ 231 Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 + + ++ +P+ T +Q+ AIK+IL D+ + N M R+LQGDVG+GKT+VA Sbjct: 232 SPQLCLTATEQREFYDKLPYQLTSAQQRAIKEILGDIKKSNTMNRLLQGDVGAGKTIVAT 291 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 +A AAV++G Q IMAP ILA+QH+ F+ +Y + I V + G + R++LE I Sbjct: 292 MAAYAAVKSGYQVAIMAPTEILAEQHFSFLCQYLASFDIKVIPLLGKLSAKQTRESLEII 351 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------PHVLL 425 + + +++GTHA+FQ+ ++Y L LV+VDEQHRFGV+QRL L K+++ PH L+ Sbjct: 352 KNEKDCVVVGTHAIFQERVEYCNLGLVVVDEQHRFGVEQRLALINKSSSNASKLTPHQLI 411 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 ++ATPIPRTL +T G++ +S + E P RKPI T ++ + +IE++K +S G++ Sbjct: 412 ISATPIPRTLAMTLYGNLKLSILDELPPKRKPIVTTVLNRAKKQNLIEKVKQAVSRGEQV 471 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF-----TSSIAIIHGRMSDIDKESVMDSFKNG 540 YW+CP +EE + +F ++ +L++ ++ +++G M DK M +FK Sbjct: 472 YWVCPLVEESENLDF---LQDVKTLYQELIVALGKENVGLVYGSMKSKDKLEEMAAFKAK 528 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L+ATTVIEVG+DV +A+I+II+NAE G++QLHQLRGRVGRG + S CILLY + Sbjct: 529 KYAVLVATTVIEVGVDVPNATIMIIDNAERLGISQLHQLRGRVGRGAKESYCILLYSDRI 588 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644 S+ RLS+++ ++DGF +AE+DL+ R G+ILG +QSG+ F Sbjct: 589 SEVGKKRLSLVRESQDGFYLAEKDLEIRGAGDILGKEQSGISIF 632 >gi|84498316|ref|ZP_00997113.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649] gi|84381816|gb|EAP97699.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649] Length = 735 Score = 347 bits (889), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 234/698 (33%), Positives = 362/698 (51%), Gaps = 81/698 (11%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERI---VTITGYISQHSSFQLQKRRP--YKILLNDG 97 DLL Y P R Y+ S ++ RI + + ++ ++ RR + ++ DG Sbjct: 31 DLLAYWP-----RRYQSPESNLAAARIGSYIVAVAEVKTATTRSMKNRRGRMLQAVITDG 85 Query: 98 TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN----- 152 + ++ + FF K G + GK+ N++ + HP Y + D Sbjct: 86 SKDLEITFFSSHGHEGK--LVPGARALFAGKVSAFNNKLQLAHPGYSLLSDFDRGDRRNL 143 Query: 153 FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 P+ +AV +L T + + + L L PE I +D+L ++ A IH P Sbjct: 144 IPIYKAVGNLHTWTVTECVRMV----LDLLDESPEAIPEDVLDRRDLVDRMAALRGIHTP 199 Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPF 271 + + A +R++Y+E L Q+AL R + KE + + G + + +PF Sbjct: 200 DSRAEID---AAEKRMSYEEALILQVALAQRRARQAKESTLARVPRPGGLLDAFDQRLPF 256 Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331 + T Q + + +M++ M R+LQG+VGSGKT++A+ AM AAV+AGGQA ++AP Sbjct: 257 TLTAGQVDIGETLATEMARDVPMHRLLQGEVGSGKTVIAVRAMLAAVDAGGQAALLAPTE 316 Query: 332 ILAQQHYEFIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380 +LA QH+ I + V ++TG+M RRKA+ IA G A I+I Sbjct: 317 VLASQHHRSITTMLGDLAEGGMLGGSDIGTRVTLLTGSMSTQSRRKAMLDIASGDAGIVI 376 Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTS 439 GTHAL Q+ + + L LV+VDEQHRFGV+QR L KA PHVL+MTATPIPRT+ +T Sbjct: 377 GTHALIQEHVSFQDLALVVVDEQHRFGVEQRDALRGKAAQPPHVLVMTATPIPRTVAMTV 436 Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE----GKKAYWICPQI--- 492 GD++ S ++E PAGR PI T ++P + ++R V ++E G++AY +CP+I Sbjct: 437 FGDMETSTLSELPAGRAPITTHVVPEAKPG-WLQRTWVRIAEEVALGRQAYVVCPRIGDD 495 Query: 493 -------------------------EEKKESNFRS--VVERFNSLHEHFTS-------SI 518 +E E + + + +H + SI Sbjct: 496 DEPDEDAEIFAPDAGGDPDSDGDGADEGAEGDAPPPRPLASVHRVHADLVANPALEGLSI 555 Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578 I+HGR+ +K+++M F +G +L++TTVIEVG+DV +AS++++ +A+ FG++QLHQ Sbjct: 556 EILHGRLPADEKDAIMRDFASGAIDVLVSTTVIEVGVDVPNASVMVVMDADRFGVSQLHQ 615 Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638 LRGRVGRG C LL H + + RL + T DGF +A DL+QR+EG+ILG Q Sbjct: 616 LRGRVGRGGLPGLC-LLVHGGDADAPHERLDAVAGTTDGFELARIDLRQRREGDILGSSQ 674 Query: 639 SGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTS 675 G L L D L+E AR+DA ++ DPDL + Sbjct: 675 HGKRTQLQFLHVLEDEDLIEAAREDAFAVVADDPDLGA 712 >gi|308177222|ref|YP_003916628.1| ATP-dependent DNA helicase RecG [Arthrobacter arilaitensis Re117] gi|307744685|emb|CBT75657.1| putative ATP-dependent DNA helicase RecG [Arthrobacter arilaitensis Re117] Length = 729 Score = 347 bits (889), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 245/729 (33%), Positives = 378/729 (51%), Gaps = 69/729 (9%) Query: 4 SFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE 63 SF N A LS + +GKK S L K E L++ P +++ I+E Sbjct: 8 SFEN---AELSAY--LGKKNSAALEKAFGYTTVGE-----FLWHFPRRYVEVGELTPIAE 57 Query: 64 ISEERIVTITGYISQHSSFQLQKRRPY--KILLND----GTGEITLLFFYRKTEMLKNVF 117 + + VT+ + S Q+ RR + ++ ++D G E+ + FF + Sbjct: 58 LPFDEHVTVVAQVVNVSQRQMHSRRGFIFEVTVSDELSAGGQELKMTFF--NGYQARTDL 115 Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVN---FPLIEAVYSLPTGLSVDLFKK 173 G +GK+ ++ + + P Y I + + P+ A +P DL Sbjct: 116 HIGTIAMFSGKVSWYQDYLQLSQPEYAILDEASQADPRPIPIYPASAKMPNKRIRDLMG- 174 Query: 174 IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233 +++E + + PE++ ++L + +P +AF H P K+ ++ AR+R A++E Sbjct: 175 LLLEQFTDQNI-PEFLPTEVLSSRHYPVRHQAFLDRHFP---KEIKYAYVARQRFAFEEA 230 Query: 234 LAGQIALLLMRKQF--KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 Q+AL +Q +K I P G++A K +PF T+ Q + I D+ Q Sbjct: 231 FLLQLALGERGRQLGAQKAIARP-PAPGRLAAKFDAQLPFRLTEDQVLVGQHISADLEQS 289 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK-------- 343 + M R+LQG+VGSGKT+VAL A+ ++AGGQA ++AP +LA QHY I+K Sbjct: 290 HPMHRLLQGEVGSGKTIVALRAILQVIDAGGQAALLAPTEVLAAQHYASIRKMLGNLAEP 349 Query: 344 --YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401 + + V ++TG+ A RR+AL IA G+ +IIGTHAL D +Q+ +L LV+VD Sbjct: 350 GLFGEGEGTGVALLTGSAKTAQRREALLGIASGETGLIIGTHALLSDQVQFAELGLVVVD 409 Query: 402 EQHRFGVQQRLKLTQKA--TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 EQHRFGV+QR L KA T PH L+MTATPIPRT+ +T GD++ S I PAGR PI+ Sbjct: 410 EQHRFGVEQRDALRAKAGDTVPHTLVMTATPIPRTVAMTVFGDLETSTIKRLPAGRAPIQ 469 Query: 460 TVIIPINRI---DEVIERLKVVLSEGKKAYWICPQIEEK-----------------KESN 499 T I+P+ D + R+ + +G + Y +CP+I + + + Sbjct: 470 THIVPMQLSGFRDRLFSRITEEVQKGHQVYVVCPRISDTTAEQGVLLSTYDDSSVGQTMS 529 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 ++ E + E +H ++ DK+ MDSF G +LI+TTVIEVG+DV + Sbjct: 530 VEAMQEMLAGMPEFAGIRTQTLHSQLDTTDKQETMDSFARGEIDVLISTTVIEVGVDVHN 589 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619 A++++I +AE FG++QLHQLRGRVGRG +C++ S RL +++T DGF Sbjct: 590 ATLMVIMDAERFGISQLHQLRGRVGRGGLPGTCLMTTWLDADHPSVGRLKTIESTTDGFE 649 Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHIL------TQDPD 672 +AE DL +R+EG ILG++QSG L + D SL+E AR D +L T P Sbjct: 650 LAEADLAERREGNILGVQQSGSKSSLRELSIIKDRSLIEQARADVGLVLANGKWGTHHPM 709 Query: 673 LTSVRGQSI 681 L + G I Sbjct: 710 LLAAAGSWI 718 >gi|294631617|ref|ZP_06710177.1| ATP-dependent DNA helicase RecG [Streptomyces sp. e14] gi|292834950|gb|EFF93299.1| ATP-dependent DNA helicase RecG [Streptomyces sp. e14] Length = 740 Score = 347 bits (889), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 233/755 (30%), Positives = 385/755 (50%), Gaps = 76/755 (10%) Query: 3 PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62 P+ PL PL + +G + +++ + DLL ++P + +R ++ Sbjct: 5 PALQEPLRRPLKSV--LGPATAKVMAEHLGLHTVG-----DLLHHYPRKYEERGRLTHLA 57 Query: 63 EISEERIVTITGYISQ-------HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKN 115 ++ + VT+ ++ S K + ++ + DG+G + L+FF Sbjct: 58 DLPMDEHVTVVAQVADARLHTFASSRAPRGKGQRLEVTITDGSGRLQLVFFGNGVHKPHK 117 Query: 116 VFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN---------FPLIEAVYSLPTGL 166 G + GK+ ++ + HP Y D PL A + + Sbjct: 118 DLLPGTRAMFAGKVSVFNRKLQLAHPAYELLQGDDGESVESFAGALIPLYPATAKMESWK 177 Query: 167 SVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE 226 + ++ +A + LPE + + + EA IH P D + A+ Sbjct: 178 IAKAVQTVLPDARDAVDPLPEALRA----GRGLLPLPEALLKIHRPHTKADI---ADAQA 230 Query: 227 RLAYDELLAGQIALLLMRKQFKKEIGIP--INVEGKIAQKILRNIPFSPTKSQESAIKDI 284 RL +DE Q+AL R + +P +G +A R +PF+ T+ Q ++I Sbjct: 231 RLKWDEAFVLQVALARRRHADAQLPAVPRVPRPDGLLAAFDDR-LPFTLTEGQRKVSREI 289 Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344 D++ + M R+LQG+VGSGKT+VAL AM A V+AGGQA ++AP +LAQQH+ I + Sbjct: 290 FTDLAADHPMHRLLQGEVGSGKTMVALRAMLAVVDAGGQAAMLAPTEVLAQQHHRSITEM 349 Query: 345 T-------------QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391 T+++ ++TG+M A RR+AL + G+A I+IGTHAL +D +Q Sbjct: 350 MGELAEGGMLGGSEHATKVV--LLTGSMGAAARRQALLDLVTGEAGIVIGTHALIEDKVQ 407 Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L LV+VDEQHRFGV+QR L K PH+L+MTATPIPRT+ +T GD++ S + + Sbjct: 408 FHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQ 467 Query: 451 KPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEE---------KKE 497 PAGR PI + ++P + ER++ +++G +AY +CP+I + KK Sbjct: 468 LPAGRSPIASHVVPAADKPHFLARAWERVREEVAKGHQAYVVCPRIGDEEDDPKKAAKKS 527 Query: 498 SNFRSVVERFNSLHEHFTSS-----------IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 + + +R L + + ++HGRM+ DK++VM F G +L+ Sbjct: 528 PDADATADRRPPLAVLDVADQLAKGPLQGLRVEVLHGRMAPDDKDAVMRRFAAGDTDVLV 587 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 ATTVIEVG++V +A++++I +A+ FG++QLHQLRGRVGRG C+L+ P + + Sbjct: 588 ATTVIEVGVNVPNATVMVITDADRFGVSQLHQLRGRVGRGSAPGLCLLVTEMPEASAARQ 647 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKH 665 RL+ + T DGF ++ DL+QR+EG++LG QSG L + D ++ AR++A Sbjct: 648 RLNAVAATLDGFELSRIDLEQRREGDVLGQAQSGARSSLRVLAVIEDEEIIAEAREEATA 707 Query: 666 ILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 ++ DP LT + G +R L ++ Q++ G Sbjct: 708 VVAADPGLTGLPG--LRTALDALLDDDKEQYLEKG 740 >gi|311898529|dbj|BAJ30937.1| putative ATP-dependent DNA helicase RecG [Kitasatospora setae KM-6054] Length = 739 Score = 346 bits (888), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 226/698 (32%), Positives = 367/698 (52%), Gaps = 80/698 (11%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGE 100 DLL ++P +++R + E+ + VT+ I + + F+ +K ++++ DG + Sbjct: 34 DLLHHYPRRYVERGQLTSLDELEVDEHVTVLARIEKVTLIPFRGRKGDRLEVVVTDGRSK 93 Query: 101 ITLLFF---YRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN----- 152 ++L+FF +R+ ++ G++ GK+ + P Y + ++ + Sbjct: 94 LSLVFFNQGWRQKDLRP-----GQQGLFAGKVGLFNRTRQLASPDYQLIDDEEGSSAAKQ 148 Query: 153 -----FPLIEAVYSLPT---GLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIA 203 P+ A +P+ L V++ AL++ L + E + +L + + Sbjct: 149 FAGRLIPVYPASAQMPSWKLSLCVEM-------ALTKHLADVGEPLPAELRAEHGLIPLP 201 Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEGKIA 262 EA +IH P D E A+ RL +DE Q+AL R +P V G + Sbjct: 202 EALELIHRPHGQADKER---AQNRLRWDEAFVLQVALAQRRAADSALPAVPRRPVPGGVL 258 Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 +PF+ T Q + +I D++ ++ M R+LQG+VGSGKTLVAL AM A V+ GG Sbjct: 259 DAFDARLPFTLTDGQRAVCAEIFADLATEHPMHRLLQGEVGSGKTLVALRAMLAVVDTGG 318 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQ-----------IIVEIITGNMPQAHRRKALERI 371 QAV++AP +LAQQH+ I + + V ++TG+M A RR AL + Sbjct: 319 QAVLLAPTEVLAQQHHRSITEMMGDLAEAGMIGGSEIGTRVALLTGSMGAAARRGALLDM 378 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATP 430 A G+A I+IGTHAL +D +++ L LV+VDEQHRFGV+QR L K PH+L+MTATP Sbjct: 379 ASGKAGIVIGTHALIEDKVRFADLGLVVVDEQHRFGVEQRDALRAKGEQPPHLLVMTATP 438 Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEGKKAY 486 IPRT+ +T GD++ S + + P+GR PI T ++P N + ER++ + +G +AY Sbjct: 439 IPRTVAMTVFGDLETSVLDQLPSGRSPISTHVVPALEKPNFLVRAWERVREEVGKGHQAY 498 Query: 487 WICPQIEEKKESNFR--------------------------SVVERFNSLHEHFTSS--I 518 +CP+I ++ E + +VVE L + + + Sbjct: 499 VVCPRIGDEDEQPAKAGRKKRGDEPEEVGGGADGEERRPPLAVVETAEKLAKGPLAGLRV 558 Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578 I+HGR++ K+ VM F G +L+ATTVIEVG++V +++ ++I +A+ FG++QLHQ Sbjct: 559 EILHGRLAPDAKDDVMRRFAAGEVDVLVATTVIEVGVNVPNSTAMVIMDADRFGVSQLHQ 618 Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638 LRGRVGRG C+L+ P + + RL + T DGF ++ DL+QR+EG++LG Q Sbjct: 619 LRGRVGRGSAAGLCLLVSDMPAASAARARLDAVAGTLDGFALSRIDLEQRREGDVLGQAQ 678 Query: 639 SGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTS 675 SG+ L L D ++ AR +A ++ DP L + Sbjct: 679 SGVKSSLKVLSVLEDEDVIAAARAEATRLVAADPGLAA 716 >gi|255530074|ref|YP_003090446.1| ATP-dependent DNA helicase RecG [Pedobacter heparinus DSM 2366] gi|255343058|gb|ACU02384.1| ATP-dependent DNA helicase RecG [Pedobacter heparinus DSM 2366] Length = 701 Score = 346 bits (888), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 244/686 (35%), Positives = 367/686 (53%), Gaps = 28/686 (4%) Query: 5 FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64 F + L + +GVG + + L K + + LL Y P +IDR K++E+ Sbjct: 2 FASTLDTTIEFLKGVGPRRAELLQKELGIFTYGQ-----LLNYFPFRYIDRTRFYKVNEL 56 Query: 65 SEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123 E V I G I+ + ++ L D TG I L++F + + + +G+ Sbjct: 57 DPELPYVQILGRITAKEQIGEKHKKRIVAKLTDETGSIELVWF-QSLKWVDEHIVKGKVY 115 Query: 124 TVTGKIKKLKNRIIMVHP---HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 V GK + HP +Y + N L + VY+ L ++ L Sbjct: 116 IVFGKPTVFNGSFSISHPDLENYPRPATVTGNLRL-QPVYNSTEKLKKSFLDSKGIQKLQ 174 Query: 181 RLPV------LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234 L + + E I +LQK EA IH P KD A RL ++EL Sbjct: 175 ALLLEQHLHEVKETIPPYILQKYQMILRKEAILNIHFP---KDVASLKKAESRLKFEELF 231 Query: 235 AGQIALLLMRKQFK--KEIGIPINVEGKIAQKILRNI-PFSPTKSQESAIKDILQDMSQK 291 Q+ LL KQ + K G + G+ R I PF T +Q+ IK+I D + Sbjct: 232 FIQLQLL-HNKQLRELKFKGHLFDKVGEGVNTFYREILPFKLTNAQKRVIKEIRLDTQRG 290 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351 +M R++QGDVGSGKT+VAL++M A + G QA +MAP ILA+QHYE I ++ + Sbjct: 291 IQMNRLVQGDVGSGKTVVALMSMLLASDNGYQACMMAPTEILARQHYESIISLLKDRLVK 350 Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411 V I+TG+ + R + + G+ +I++GTHAL +D + + L +V++DEQHRFGV+QR Sbjct: 351 VAILTGSSTKKQRTQLHAALEAGEINILVGTHALIEDKVVFKSLGMVVIDEQHRFGVEQR 410 Query: 412 LKLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470 +L +K A PH+L+MTATPIPRTL +T GD+D+S I E PAGRKPI+T + + Sbjct: 411 ARLWRKNAIPPHILVMTATPIPRTLAMTMYGDLDVSVIDELPAGRKPIETRHLYEGQRLR 470 Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSD 527 + +K +++G++ Y + P I+E ++ + + + F I+I+HG+MS+ Sbjct: 471 MFGFMKQEIAKGRQVYVVYPLIKESEKLDLLHLEAGIEQMGYQFPRPDYQISIVHGKMSN 530 Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587 DK+ M F NG ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG Sbjct: 531 ADKQYEMQQFINGKSQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGA 590 Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 S CIL+ LS + RL + T +GF I+E DL+ R G+I G +QSG+ + +A Sbjct: 591 AQSFCILMSGNKLSADGKLRLETMVKTNNGFEISEIDLQLRGPGDITGTQQSGVLELKLA 650 Query: 648 QPELHDSLLEIARKDAKHILTQDPDL 673 +L+ AR +L DP L Sbjct: 651 DLAKDQLILQEARNTVIEVLAADPHL 676 >gi|332799410|ref|YP_004460909.1| ATP-dependent DNA helicase RecG [Tepidanaerobacter sp. Re1] gi|332697145|gb|AEE91602.1| ATP-dependent DNA helicase RecG [Tepidanaerobacter sp. Re1] Length = 675 Score = 346 bits (888), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 218/631 (34%), Positives = 348/631 (55%), Gaps = 17/631 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99 D+LFY P + D P + E + I S+ + R K+ + DG Sbjct: 33 DVLFYFPRDYQDMS--PLTFKQGTEDETGVFPCIVTGSAVSRKTRTGIYITKLPITDGQN 90 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI-FHNSQDVNFPLIEA 158 + +FF ++ F+ +++ + GKIKK + P +I F ++ I Sbjct: 91 KGYAVFF--NQPFVEKSFYPNQRLLLIGKIKKNFGVYEISSPEWIKFEKVSNIKIERIRP 148 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 +Y L G+S + + + A+ + L E + D+L + + S+ EA IH P ++F Sbjct: 149 IYPLSKGISQNFIRNTVKNAIEKFSGLEETLPNDILSRYNLLSLEEAIKNIHFP---QNF 205 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA-QKILRNIPFSPTKSQ 277 ARER ++ELL Q+ + L R K E NV I + L IPF+ T Q Sbjct: 206 RMLEKARERFIFEELLLFQLGVNLSRYYSKSEK--RKNVYNTIDLEPFLSGIPFTLTSGQ 263 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 E +KDI++D+ + M R++QGDVGSGKT++A A+ +V+ G Q V+MAP ILA+QH Sbjct: 264 EKVLKDIIKDLKSEYIMSRLIQGDVGSGKTVIACAALYLSVKNGFQGVMMAPTEILAEQH 323 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y +K++ I V+++ G + + R+K L ++ +G +++GTHA+ Q+ +++ KL + Sbjct: 324 YNTLKRFLSPFDINVDMLKGGLAEKERKKLLLKLKNGTVDVLVGTHAIIQEDVEFKKLGM 383 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI DEQHRFGV+QR L +K P V++M+ATPIPRT+ + D+DIS I PAGR+ Sbjct: 384 VITDEQHRFGVKQRENLVKKGHCPDVIVMSATPIPRTIAMALYSDLDISVIDTLPAGRQK 443 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516 + T ++ + + + + + +G Y +CP +EE E +V + L + + Sbjct: 444 VDTYVVNDSMRKRIYDFMASEVKKGHLVYVVCPAVEE-NELEIINVEQHTAYLRQEYPYL 502 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 I ++HG+M +K+ +++ F ++L+ATTV+EVG+DV A+++I+ENAE FGLAQL Sbjct: 503 QIGMLHGKMKQDEKDKMLNRFLLKKIQVLVATTVVEVGVDVPLATLMIVENAERFGLAQL 562 Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636 HQLRGRVGR S CIL+ + RL+ L N DGF I+++DL+ R GE LG+ Sbjct: 563 HQLRGRVGRSSLKSYCILISGSN-QGTARERLNYLMNCYDGFKISQKDLELRGPGEFLGV 621 Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 KQ G +F A + +L+ +K A IL Sbjct: 622 KQHGFFEFKFASFIDNIEILKTTQKLANQIL 652 >gi|125973793|ref|YP_001037703.1| ATP-dependent DNA helicase RecG [Clostridium thermocellum ATCC 27405] gi|281417950|ref|ZP_06248970.1| ATP-dependent DNA helicase RecG [Clostridium thermocellum JW20] gi|125714018|gb|ABN52510.1| ATP-dependent DNA helicase RecG [Clostridium thermocellum ATCC 27405] gi|281409352|gb|EFB39610.1| ATP-dependent DNA helicase RecG [Clostridium thermocellum JW20] gi|316940014|gb|ADU74048.1| ATP-dependent DNA helicase RecG [Clostridium thermocellum DSM 1313] Length = 694 Score = 346 bits (888), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 237/643 (36%), Positives = 357/643 (55%), Gaps = 23/643 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ--LQKRRPYKILLNDGTGE 100 DL+ + P + DR KI +++E T G I + + Q Y+ + D TG Sbjct: 37 DLITHFPYDYEDRSNIKKICQLTEGESCTFEGIIMSKVTERKIRQGLTLYQAYIKDDTG- 95 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD-VNFPLIEAV 159 T++ + +K V G GKI + + + +P Y ++ N I V Sbjct: 96 -TIIATWYNQPYIKKVLTVGESYIFYGKIVRGYKTLEVQNPVYEKACKEEHKNTMKIVPV 154 Query: 160 YSLPTGLSVDLFKKIIVEALSRLP-----VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 Y L+ + + ++ AL + VLP W+ K K I AF+ IH PR Sbjct: 155 YHATANLTQNTIRTVMQNALELVDGNLEDVLPLWVRK----KYCLCDINYAFSNIHFPRN 210 Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFK--KEIGIPINVEGKIAQKILRNIPFS 272 D + AR RL ++EL Q+ LL ++ KE GI K + +I F+ Sbjct: 211 DGDIK---NARYRLVFEELFLLQLGLLSVKTVLSDGKE-GIAFAPNRKEMVDFINSIGFT 266 Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332 T +Q+ ++I +DM M R++QGDVGSGKT+VA +A+A AV++G Q +M P I Sbjct: 267 LTNAQKRVWEEIEKDMESNRVMNRLVQGDVGSGKTIVAALALAKAVKSGYQGAMMVPTEI 326 Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392 LA+QHYE +K I V ++ G+ + R + L +I G+ +I+IGTHAL ++ +++ Sbjct: 327 LAKQHYESLKDIMGKHGINVALLVGSQTKKQRSEILSKIESGEVNIVIGTHALIEEKVKF 386 Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452 KL LVI DEQHRFGV+QR L+ K P +L+MTATPIPRTL L GD+DIS I E P Sbjct: 387 SKLGLVITDEQHRFGVRQRAMLSNKGINPDILVMTATPIPRTLALILYGDLDISIIDELP 446 Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL-H 511 GRKP+KT + + + +K + EG++AY ICP ++E E +S ++ + Sbjct: 447 PGRKPVKTYAVDNSMRQRINNFIKKQILEGRQAYIICPLVDESDEIEAKSALKTAEKIAK 506 Query: 512 EHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 E F + ++HG+M +KE VM F G +L++TTV+EVG++V +A+++++ENAE Sbjct: 507 EDFKDFRVGLLHGKMPAGEKEEVMQKFLKGEIDILVSTTVVEVGVNVPNATLMVVENAER 566 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630 FGLAQLHQLRGRVGRG S CI LY+ S+ + R+ V++ T DGF+I+E+DL R Sbjct: 567 FGLAQLHQLRGRVGRGPHQSYCI-LYNESKSQIAKERMKVMQETTDGFVISEKDLLIRGP 625 Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 GE G +Q G+P IA +L+ A++ A+ IL +D +L Sbjct: 626 GEFFGTRQHGLPDLKIANLYRDMEILKKAQEAAQEILKRDRNL 668 >gi|284045153|ref|YP_003395493.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684] gi|283949374|gb|ADB52118.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM 14684] Length = 707 Score = 346 bits (887), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 226/646 (34%), Positives = 358/646 (55%), Gaps = 33/646 (5%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR--RPY-KILLNDGTG 99 DLL + P + R ++++ EE TI + +S +++R RP + L+ D TG Sbjct: 58 DLLGHLPRA---RGEARTVADLVEEETATIVVEVRSITSRPVRRRGMRPLVEALVADQTG 114 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHP--HYIFHNSQDVNFPLIE 157 + + FF + L + G ++ +TG++ + ++ P + Q +P E Sbjct: 115 PLKVTFFNQP--WLVERYRPGTRVMLTGRLGQRSFKVSAHAPTTQQVAGVEQVAQYPASE 172 Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 + S+ + I++ + LPV + + + P A +H P A+D Sbjct: 173 GISSVQLLAMAQEHRGAIMDTIEPLPVA-------IRRAEELPDRHAALTAVHFPATARD 225 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI--NVEGKIAQKILRNIPFSPTK 275 R RLAYDELL Q+ LL R + ++ P V A+ + +PF+PT Sbjct: 226 ---PVDGRRRLAYDELLLLQLGLLRRRARREQATRAPALDGVRELTARWLEHGLPFAPTG 282 Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 Q+ A++ + D++ + M R+L G+VGSGKT+VAL A+ AVE G Q +MAP LA+ Sbjct: 283 DQQRAMEQVDADIAHERPMQRLLMGEVGSGKTVVALFALLRAVEQGWQGALMAPTETLAE 342 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 QH+ I+ T + + ++TG+ P A RR L ++A G+ +++GTHAL +D +++ +L Sbjct: 343 QHFATIQALTAADTLQIALLTGSTPAARRRDVLGKLASGELALVVGTHALIEDPVRFARL 402 Query: 396 ILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452 +V+VDEQHRFGV+QR L KA PHVL MTATPIPRTL L GD+D + + E P Sbjct: 403 GVVVVDEQHRFGVRQRAALDAKAPDGLNPHVLHMTATPIPRTLALVEHGDLDHTALRELP 462 Query: 453 AGRKPIKTVIIPINRIDE-VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511 GR+PI+T + R E ER++ L EG++A+ +CP + E + ++ E + L Sbjct: 463 RGRQPIETFVAGGERARERAYERIREELREGRQAFVVCPLVGESEALQAKAATEEYERLR 522 Query: 512 --EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 E + ++HG+M +K+ M +F G +L+AT+VIEVGIDV +A+++++E+AE Sbjct: 523 RTEFKDFRVVLMHGQMRPREKQEAMAAFAAGGADVLVATSVIEVGIDVPNATVMLVEDAE 582 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629 +G++QLHQLRGR+GRGE S C LL+ P RL L DGF +A DL+ R+ Sbjct: 583 RYGISQLHQLRGRIGRGEHASLC-LLFGP----RDSARLKALAEHGDGFELARIDLELRR 637 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 EG+I+G++Q G + IA + LLE A A+ +L DP+L + Sbjct: 638 EGDIVGVRQHGDVAYRIAILPDDEDLLERAHARAEALLAADPELEA 683 >gi|160901684|ref|YP_001567265.1| ATP-dependent DNA helicase RecG [Petrotoga mobilis SJ95] gi|160359328|gb|ABX30942.1| ATP-dependent DNA helicase RecG [Petrotoga mobilis SJ95] Length = 781 Score = 346 bits (887), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 212/668 (31%), Positives = 369/668 (55%), Gaps = 23/668 (3%) Query: 10 FAPLSTFR---GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66 APL+ + VG K +L L+K+ D +Y P + DR KI E Sbjct: 99 LAPLTDIKYIKKVGTKRALILNKL------GIFSLKDFFYYPPRDYEDRRKVVKIFNAKE 152 Query: 67 ERIVTITGYISQHSSFQLQKRRP-YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 + V I G + + ++ K Y + D +G I + FF + +K+ G K Sbjct: 153 DEKVVIIGNVVKSEEVKINKGLTIYNFSVEDDSGVIIVTFF--NQDYVKSYLKRGVKSAF 210 Query: 126 TGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184 GKI+ M P + + + +D ++ VY L G+ ++I EA+ + Sbjct: 211 YGKIEYSYGMKQMKSPDFQVIESDEDFKSEIL-PVYPLTFGIFQTTMRRIAKEAIQQTYF 269 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA--KDFEWTSPARERLAYDELLAGQIALLL 242 L E++ ++ +Q+ + + + IH P K+ W S L Y+E + ++A++ Sbjct: 270 LEEFLPEEFVQEFNLLDLKKRIKGIHFPLSIYHKERSWYS-----LKYEEAILFELAMIY 324 Query: 243 MRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 ++ + K+ G ++G++ +K L + F T++Q+ + ++I +D+ M R+LQGD Sbjct: 325 LKLKMKEMKKGETKEIKGELTKKFLNTLNFELTQAQKRSYEEIRKDLISPYPMNRLLQGD 384 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+V+ +A+ EAG QA +M P +LA+Q ++ + K + + + ++TG+ + Sbjct: 385 VGSGKTVVSELAIIDVCEAGYQAAVMNPTSVLAKQQFKKLSKDLEPLGLKIVLLTGDTKE 444 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 + + E++ G+ +++GTHA+ Q +++ KL LV++DEQHRFGV QRL+L +K P Sbjct: 445 SDKILIKEKLKLGEIDVVVGTHAIIQQDVEFKKLGLVVIDEQHRFGVNQRLELIKKGNHP 504 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 +L+MTATPIPRTL +T GD+D+S I E P GR+PIKT++I + + E +K L + Sbjct: 505 DILVMTATPIPRTLAMTFYGDLDVSLIDEMPKGRRPIKTILIAESNRKSLYEFVKEELDQ 564 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540 G + +++ P IEE + ++ + + L + F + ++HGR+S +K VMD F Sbjct: 565 GNQVFFVYPLIEESEALELKNAISMYEELSKVFEEYKVGLLHGRLSPSEKNDVMDKFVQK 624 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L++T+V+EVGID+ DA++++IE+ + FGL+QLHQLRGRVGR ++ S C L+ Sbjct: 625 EYDILVSTSVVEVGIDIPDATVMVIEHPDRFGLSQLHQLRGRVGRSDKQSYCFLVIDDDA 684 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + ++++ T DGF +AE DLK R G+ G++Q G+P+F +++E +R Sbjct: 685 NNEIKSKMNSFSKTLDGFEVAEIDLKWRGPGKFFGVEQHGIPEFKFLDLVEDINIIENSR 744 Query: 661 KDAKHILT 668 K + L Sbjct: 745 KKVERFLA 752 >gi|19552544|ref|NP_600546.1| RecG-like helicase [Corynebacterium glutamicum ATCC 13032] gi|62390208|ref|YP_225610.1| RecG-like helicase [Corynebacterium glutamicum ATCC 13032] gi|21324094|dbj|BAB98719.1| RecG-like helicases [Corynebacterium glutamicum ATCC 13032] gi|41325544|emb|CAF20024.1| RecG-like helicase [Corynebacterium glutamicum ATCC 13032] Length = 707 Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 219/638 (34%), Positives = 348/638 (54%), Gaps = 56/638 (8%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS-QHSSFQLQKRRPYKILLNDGTGEI 101 +LL +H + I + +E +VTI G ++ S+ + YK+ + T I Sbjct: 33 ELLRHHVRKYSHHGSGVGIGDATEGDLVTIVGQVAFAKQSYTQSGKMLYKVTVLTETERI 92 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI----------------- 144 + FF K + + EG + TGK+K +N + HP +I Sbjct: 93 GISFFGAK--HIPRLLPEGTRALFTGKVKFFRNEPQLSHPEFIVIPDPGSGRRLTATGGM 150 Query: 145 -----FHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQ 195 + + ++V L++ +Y+ ++ + L +PV+ E + + Sbjct: 151 KSLAAYGDVEEVALRLVDREYIPIYAGTATMTTWRIMAAVQRVLETMPVIKEPLS---VV 207 Query: 196 KKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI 255 + PS EA IH+P E S RL Y+E L+ + + R K P+ Sbjct: 208 PEGMPSFDEAIRGIHDP----GHESPSTFINRLKYNEALSLATVMAIRRADTKNRKAPPM 263 Query: 256 NVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 K Q +L + + F T Q+ I++I D+ Q+ M R+LQG+VGSGKT+V+LIAM Sbjct: 264 PRALKGHQHMLIDALNFQLTVGQKQVIREISADIEQRVPMSRLLQGEVGSGKTIVSLIAM 323 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII--TGNMPQAHRRKALERIA 372 A+++G Q ++AP +LA QH + K + + + ++ TG+MP +++AL I Sbjct: 324 LQAIDSGRQCAMLAPTEVLATQHARSLSKTLDDAGLDINVVLLTGSMPTGAKKEALLEII 383 Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTAT 429 G A I++GTHAL QD+++++ L LV+VDEQHRFGV+QR +L K PH+L+MTAT Sbjct: 384 SGDADIVVGTHALIQDTVEFFDLGLVVVDEQHRFGVEQRDQLRTKGREGLTPHLLVMTAT 443 Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAY 486 PIPRT+ +T GD+ +S + E P GR+PI+T +IP ++ + ER+ + G++AY Sbjct: 444 PIPRTIAMTVFGDLAVSTLRELPGGRRPIQTSVIPDHKPGWVKRGWERIGEEVLAGRQAY 503 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKL 544 +CP+IE + V+E L E ++ ++HGRM K+SVM F G + Sbjct: 504 VVCPRIEGEG-----GVLEIHAYLSEQVYPGLNVGMLHGRMDTDLKDSVMQEFAQGEIDI 558 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 L+ATTVIEVGIDV +A++++I AE FG++Q+HQLRGRVGRG+ S C+L H ++S Sbjct: 559 LVATTVIEVGIDVANATVMLIREAERFGVSQIHQLRGRVGRGQHDSLCLL--HTTFDEDS 616 Query: 605 --YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 RL+ + T DGF ++E DL+ R+EG++LG +QSG Sbjct: 617 PQGQRLAAISTTTDGFQLSELDLQVRQEGDVLGTRQSG 654 >gi|19704981|ref|NP_602476.1| ATP-dependent DNA helicase recG [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19712887|gb|AAL93775.1| ATP-dependent DNA helicase recG [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 689 Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 227/608 (37%), Positives = 348/608 (57%), Gaps = 20/608 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK-RRPYKILLNDGTGEI 101 DL++Y P ++ DR KI E+ V + + + ++ ++ K ++ DGTG + Sbjct: 38 DLIYYFPRAYDDRTNIKKIGELKFNEYVVLKATVMSAVNLTVRSGKKIVKAMVTDGTGIM 97 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVY 160 +L+F +K G + G+ KK +++P Y +F Q V+ I +Y Sbjct: 98 EILWF--GMPYIKKSLKIGEEYLFIGQTKK-SAVFQLINPEYKLFSGQQKVSENEILPIY 154 Query: 161 SLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 S ++ + +K++ + L L E I K L+++ A IH P K+ E Sbjct: 155 SSNKNITQNSLRKLVEKFLVNFLNYFEENIPKKLIKEYKIMERKSAIKNIHYPVSMKEIE 214 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI--AQKILRNIPFSPTKSQ 277 A+ R A +ELL ++ +L R + VEGK ++ L + F+ T +Q Sbjct: 215 ---EAKRRFAIEELLILELGILKNRFIIENSNSKNYEVEGKKEKVREFLSQLTFNLTNAQ 271 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + IK+I ++S + R++QGDVGSGKT+VA++ + E G Q +MAP ILA QH Sbjct: 272 KKVIKEIYDEISNGKIVNRLIQGDVGSGKTVVAMVMLIYMAENGYQGALMAPTEILANQH 331 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y IK+ + + VE++T ++ + + L+ IA+G I+IGTH+L +D + + KL L Sbjct: 332 YLGIKERLEQIGLRVELLTSSIKGKKKNEILDGIANGDIDIVIGTHSLIEDDVIFKKLGL 391 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +++DEQHRFGV QR KL +K ++L+M+ATPIPR+L L+ GD+D+S I E P GR P Sbjct: 392 IVIDEQHRFGVNQRNKLREKGFLGNLLVMSATPIPRSLALSIYGDLDLSIIDELPPGRTP 451 Query: 458 IKTVIIPINRIDEVIERLKVVL----SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 IKT I DE +E++ + ++G +AY++ P IE + +SV + + Sbjct: 452 IKTKWIA---NDEDLEKMYNFIYKKVNDGNQAYFVAPLIETSDKMALKSVDKVSEEIERK 508 Query: 514 FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 F++ I IIHG+M +K+ VM FKN +LIATTVIEVGIDV ++I+ I NAE FG Sbjct: 509 FSNKKIGIIHGKMKAKEKDEVMLKFKNKEYDILIATTVIEVGIDVPASTIMTIYNAERFG 568 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 L+ LHQLRGRVGRG + S C L+ + ++NS RLS+++ TEDGF IAEEDLK R GE Sbjct: 569 LSALHQLRGRVGRGSKQSYCFLISNST-TENSKQRLSIMEETEDGFRIAEEDLKLRNSGE 627 Query: 633 ILGIKQSG 640 I G++QSG Sbjct: 628 IFGLRQSG 635 >gi|160915456|ref|ZP_02077667.1| hypothetical protein EUBDOL_01464 [Eubacterium dolichum DSM 3991] gi|158432576|gb|EDP10865.1| hypothetical protein EUBDOL_01464 [Eubacterium dolichum DSM 3991] Length = 550 Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 192/516 (37%), Positives = 302/516 (58%), Gaps = 8/516 (1%) Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 I VY+L G++ +K I +A + + + ++I L QK ++A IH+P Sbjct: 14 IHPVYNLKEGITQKELEKYIDKAYALMKEAITDFIPPSLRQKYRLIERSQALLYIHHPY- 72 Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSP 273 D + L Y+E L Q+A+ ++ Q K + G E + ++ + F Sbjct: 73 --DENSLKQSLRHLKYEEFLKFQLAMRCIKDQESKLVKGQGKQFEREEVMRLKHTLAFEL 130 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 ++ QE I++I+ D++ + M R+LQGDVG GKT+VA M A + A QA +MAP IL Sbjct: 131 SEDQEKVIEEIMDDLASEKIMYRLLQGDVGCGKTVVAAFGMYACILAHKQAALMAPTEIL 190 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QH + ++ ++ I+VE + G++P + LER+ + +++GTH LFQ+ + +Y Sbjct: 191 AKQHTDNLRAMFKDMDIVVEGLYGSLPAQDKASILERLKTNEIDLLVGTHTLFQEQVDFY 250 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L +V+ DEQHRFGV+QR +L K LLM+ATPIPRTL L+ GD+++S I + P Sbjct: 251 DLGMVVADEQHRFGVEQRRRLLAKGDKVDFLLMSATPIPRTLALSLYGDMEVSSIHQLPK 310 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 GR PI T ++ + ++E + + + EG + Y +CP IE ++ R+V++ + + Sbjct: 311 GRMPITTKLVASKSMAPILEEVLMYIDEGNQCYVVCPAIENNEDYKMRNVMDIYKGMQAS 370 Query: 514 FTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 I ++HGRMS +K+ VM F GT ++L+ TTVIEVG+DV +A+I+II +A F Sbjct: 371 IGRKYRIGLLHGRMSAQEKDQVMREFVAGTLQILVTTTVIEVGVDVKNANIMIIYDAHRF 430 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631 GL+Q+HQLRGRVGRG++ C LL S RL + T DGF +A DL+ R G Sbjct: 431 GLSQIHQLRGRVGRGDKAGYCYLLSDTK-DMESKKRLQACEKTNDGFELARIDLELRGPG 489 Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 +ILG +QSG+P F++ ++LE+AR+DA IL Sbjct: 490 DILGTRQSGVPGFILGDVIQDANILEVAREDACAIL 525 >gi|183219772|ref|YP_001837768.1| ATP-dependent DNA helicase RecG [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189909907|ref|YP_001961462.1| ATP-dependent DNA helicase RecG [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774583|gb|ABZ92884.1| ATP-dependent DNA helicase, recG-related [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778194|gb|ABZ96492.1| ATP-dependent DNA helicase RecG [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 686 Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 238/681 (34%), Positives = 374/681 (54%), Gaps = 35/681 (5%) Query: 13 LSTFRGVG-KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 LS +G+G K+ ++ L I+ + +LL Y P ++DR++ I + + +VT Sbjct: 8 LSNLKGIGPKRKTVLLEHGIST-------YYELLTYFPRRYLDRNFTKDII-LKQGDVVT 59 Query: 72 ITGYISQHSSFQLQKRR---PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 + G I +K R ++ L N+ I L+FF R + +F +K+ V+GK Sbjct: 60 LLGSIVDSYIVHGKKSRLLVGFRTLNNE---RINLVFF-RGVNFFQKLFAIDKKVVVSGK 115 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLP----------TGLSVDLFKKIIVEA 178 ++ + I+ HP Y F + D I A +P GL +K+I + Sbjct: 116 LEYFRGYQIL-HPEYEFLSDADDPEDSIHAGRIIPLYPSTEALKEDGLDSKGLRKLIHQV 174 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L + E + ++K+ EAF IH P E AR+R AY+E Q Sbjct: 175 LE-AGTISENLPSKFIKKRKLLGRDEAFRNIHFP---DTMETVQIARKRFAYEEFYYFQR 230 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 LL +++ +K + + ++ L +N+PF T+ Q+SA+ IL + + + Sbjct: 231 LLLYKQRERQKVKRLLWPLPKSPSRTNLEKNLPFELTEDQKSAVTTILSKTNSDSPSAFL 290 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII-VEIIT 356 LQGDVGSGKT+ AL+ ++ Q V +AP ILA+QHY+ I K+ N + +E++ Sbjct: 291 LQGDVGSGKTITALLVGLHYIDNHIQVVFLAPTEILARQHYQTIYKFMGNMPFLGIELLL 350 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G + R + L RI G+++IIIGTH+L Q+ + + L LV++DEQH+FGV QR + Sbjct: 351 GGENKKTRAEKLSRIKTGESNIIIGTHSLLQEDVIFSDLGLVVIDEQHKFGVDQRETIRA 410 Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 K P +L MTATPIPRTL LT GD+ + I KP GRKPI T +R V ++ Sbjct: 411 KGKNPDILAMTATPIPRTLCLTLYGDLTLVNIKTKPKGRKPIDTRWYKEDRRAGVYNSIR 470 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVM 534 +S G++ Y + P +EE ++ + S + +L I ++HG+M ++KESVM Sbjct: 471 KYVSSGRQCYIVYPLVEESEKVDLESCTVAYENLRTTVFPDLKIGLLHGKMKSVEKESVM 530 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 + FK+G ++L+ TTV+EVG+DV +A+I+++E+AE FG++QLHQLRGRVGR + S CIL Sbjct: 531 EKFKSGEIQILVTTTVVEVGVDVPNATILVVEHAERFGISQLHQLRGRVGRSDLESFCIL 590 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 + +S+ RL L + DG+ +AE+DL R GE+LG+KQSG+P+F IA + Sbjct: 591 MTGDSISEEGRDRLEALVASNDGYYLAEKDLAIRGPGELLGVKQSGLPEFKIADLVVDRE 650 Query: 655 LLEIARKDAKHILTQDPDLTS 675 LL+ A++DA I DP+ S Sbjct: 651 LLDEAKEDASSIPLDDPNEVS 671 >gi|296329235|ref|ZP_06871736.1| DNA helicase RecG [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153591|gb|EFG94408.1| DNA helicase RecG [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 689 Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 227/608 (37%), Positives = 348/608 (57%), Gaps = 20/608 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK-RRPYKILLNDGTGEI 101 DL++Y P ++ DR KI E+ V + + + ++ ++ K ++ DGTG + Sbjct: 38 DLIYYFPRAYDDRTNIKKIGELKFNEYVVLKATVMSAVNLTVRSGKKIVKAMVTDGTGIM 97 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVY 160 +L+F +K G + G+ KK +++P Y +F Q V+ I +Y Sbjct: 98 EILWF--GMPYIKKSLKIGEEYLFIGQTKK-SAVFQLINPEYKLFSGQQKVSENEILPIY 154 Query: 161 SLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 S ++ + +K++ + L L E I K L+++ A IH P K+ E Sbjct: 155 SSNKNITQNSLRKLVEKFLVNFLNYFEENIPKKLIKEYKIMERKSAIKNIHYPVSMKEIE 214 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI--AQKILRNIPFSPTKSQ 277 A+ R A +ELL ++ +L R + VEGK ++ L + F+ T +Q Sbjct: 215 ---EAKRRFAIEELLILELGILKNRFIIENSNSKNYEVEGKKEKVREFLSQLTFNLTNAQ 271 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + IK+I ++S + R++QGDVGSGKT+VA++ + E G Q +MAP ILA QH Sbjct: 272 KKVIKEIYDEISNGKIVNRLIQGDVGSGKTVVAMVMLIYMAENGYQGALMAPTEILANQH 331 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y IK+ + + VE++T ++ + + L+ IA+G I+IGTH+L +D + + KL L Sbjct: 332 YLGIKERLEQIGLRVELLTSSIKGKKKNEILDGIANGDIDIVIGTHSLIEDDVIFKKLGL 391 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +++DEQHRFGV QR KL +K ++L+M+ATPIPR+L L+ GD+D+S I E P GR P Sbjct: 392 IVIDEQHRFGVNQRNKLREKGFLGNLLVMSATPIPRSLALSIYGDLDLSIIDELPPGRTP 451 Query: 458 IKTVIIPINRIDEVIERLKVVL----SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 IKT I DE +E++ + ++G +AY++ P IE + +SV + + Sbjct: 452 IKTKWIA---NDEDLEKMYNFIYKKVNDGNQAYFVAPLIETSDKMALKSVDKVSEEIERK 508 Query: 514 FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 F++ I IIHG+M +K+ VM FKN +LIATTVIEVGIDV ++I+ I NAE FG Sbjct: 509 FSNKKIGIIHGKMKAKEKDEVMLKFKNKEYDILIATTVIEVGIDVPASTIMTIYNAERFG 568 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 L+ LHQLRGRVGRG + S C L+ + ++NS RLS+++ TEDGF IAEEDLK R GE Sbjct: 569 LSALHQLRGRVGRGSKQSYCFLISNST-TENSKQRLSIMEETEDGFRIAEEDLKLRNSGE 627 Query: 633 ILGIKQSG 640 I G++QSG Sbjct: 628 IFGLRQSG 635 >gi|256028462|ref|ZP_05442296.1| ATP-dependent DNA helicase recG [Fusobacterium sp. D11] gi|289766383|ref|ZP_06525761.1| ATP-dependent DNA helicase recG [Fusobacterium sp. D11] gi|289717938|gb|EFD81950.1| ATP-dependent DNA helicase recG [Fusobacterium sp. D11] Length = 689 Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 227/608 (37%), Positives = 348/608 (57%), Gaps = 20/608 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK-RRPYKILLNDGTGEI 101 DL++Y P ++ DR KI E+ V + + + ++ ++ K ++ DGTG + Sbjct: 38 DLIYYFPRAYDDRTNIKKIGELKFNEYVVLKAIVMSAVNLTVRSGKKIVKAMVTDGTGIM 97 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVY 160 +L+F +K G + G+ KK +++P Y +F Q V+ I +Y Sbjct: 98 EILWF--GMPYIKKSLKIGEEYLFIGQTKK-SAVFQLINPEYKLFSGQQKVSENEILPIY 154 Query: 161 SLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 S ++ + +K++ + L L E I +L+++ A IH P K+ E Sbjct: 155 SSNKNITQNSLRKLVEKFLVNFLNYFEENIPDELIKEYKIMERKSAIKNIHYPVSMKEIE 214 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI--AQKILRNIPFSPTKSQ 277 A+ R A +ELL ++ +L R + VEGK + L + F+ T +Q Sbjct: 215 ---EAKRRFAIEELLILELGILKNRFIIENSNSKNYEVEGKKEKVKNFLSQLTFNLTNAQ 271 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + IK+I ++S + R++QGDVGSGKT+VA++ + E G Q +MAP ILA QH Sbjct: 272 KKLIKEIYDEISNGKIVNRLIQGDVGSGKTVVAMVMLIYMAENGYQGALMAPTEILANQH 331 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y IK+ + + VE++T ++ + + LE IA+G I+IGTH+L +D++ + KL L Sbjct: 332 YLGIKERLEKIGLRVELLTSSIKGKKKNEILEGIANGDIDIVIGTHSLIEDNVVFKKLGL 391 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +++DEQHRFGV QR KL +K ++L+M+ATPIPR+L L+ GD+D+S I E P GR P Sbjct: 392 IVIDEQHRFGVNQRNKLREKGFLGNLLVMSATPIPRSLALSIYGDLDLSIIDELPPGRTP 451 Query: 458 IKTVIIPINRIDEVIERLKVVL----SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 IKT I DE +E++ + + G +AY++ P IE + +SV + + Sbjct: 452 IKTKWIA---NDEDLEKMYDFIYKKVNAGNQAYFVAPLIETSDKMELKSVDKVSEEIERK 508 Query: 514 FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 F++ I IIHG+M +K+ VM FKN +LIATTVIEVGIDV ++I+ I NAE FG Sbjct: 509 FSNKKIGIIHGKMKAKEKDEVMLKFKNKEYDILIATTVIEVGIDVPASTIMTIYNAERFG 568 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 L+ LHQLRGRVGRG + S C L+ + +++NS RLS+++ TEDGF IAEEDLK R GE Sbjct: 569 LSALHQLRGRVGRGSKQSYCFLISN-SITENSKQRLSIMEETEDGFRIAEEDLKLRNSGE 627 Query: 633 ILGIKQSG 640 I G++QSG Sbjct: 628 IFGLRQSG 635 >gi|150016042|ref|YP_001308296.1| ATP-dependent DNA helicase RecG [Clostridium beijerinckii NCIMB 8052] gi|149902507|gb|ABR33340.1| ATP-dependent DNA helicase RecG [Clostridium beijerinckii NCIMB 8052] Length = 677 Score = 345 bits (885), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 237/670 (35%), Positives = 370/670 (55%), Gaps = 28/670 (4%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSS--FIDRHYRPKISEISE 66 +++ +ST +GVG K + K+ CG N +D+L Y P F+D + + + E Sbjct: 3 IYSNISTLKGVGPKAT---EKLNRCGIFN---ILDILLYFPRDYEFVDSNVEFE-NITGE 55 Query: 67 ERIVTITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITV 125 ++ + I S + + + + D G +++ +F ++ +KN F G + Sbjct: 56 DKQILKCKVIRFRSDVKTKTGKLLTTVEFDYNGHKVSGKWFNQR--YIKNSFKIGEIYNL 113 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 GK K++ N + +V+P + + ++ +I Y L +S LF+K+I E LS++ V Sbjct: 114 MGKFKRVGNTLEVVNP--MVTCEEAISNEIIPK-YPLKGDISNKLFEKLINEILSKMTV- 169 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA-GQIALLLMR 244 E + +++L K S+ EA +H P + E A RL + EL LLL Sbjct: 170 KENLPQNILDKYYLISLNEAIRSVHFPDNKEVLE---KAIIRLKFQELFTYSLKLLLLKH 226 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 K K + GI +++ +PF T +Q I++IL+D + M R++QGDVGS Sbjct: 227 KIKKNKNGILFQWVDELSL-FKEKLPFPLTNAQTRVIREILRDQKSNSSMNRLIQGDVGS 285 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKT++ALIA+ ++ Q MAP ILA QH+E +K I +E++TG + Sbjct: 286 GKTIIALIAIFNVIKNDYQCAFMAPTEILANQHFEEARKVYDEFNIEIELLTGTTSVKEK 345 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424 ++ ERI + ++IGTHALFQD +++ KL L++ DEQHRFGV+QR KL K L Sbjct: 346 QRIKERIRTKEPILVIGTHALFQDDVEFGKLGLIVTDEQHRFGVEQRSKLINKGKRADCL 405 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 +MTATPIPRTL L D+D+S I E P GRK I T N+ D + + +G++ Sbjct: 406 VMTATPIPRTLALYLYSDLDVSIIDELPPGRKKIDTRFYADNQRDIAYDLAYDEIKKGRQ 465 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542 Y +CP IEE ++ SV +N L + I+HG+M +K+ ++ FKN Sbjct: 466 VYIVCPLIEEDEKEELNSVETLYNKLTSGIFKELKVEILHGKMKGSEKDEIIKRFKNNEV 525 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 +LI+TTVIEVG++V +AS++I+ENAE FGL+QLHQLRGRVGRG+ S CIL+ S Sbjct: 526 NVLISTTVIEVGVNVPNASVMIVENAERFGLSQLHQLRGRVGRGQYSSYCILIAKAK-SN 584 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL--LEIAR 660 + R+ ++ DGFLI+E+DL+ R GE+ G KQSG F++A L+D + L A+ Sbjct: 585 VTKKRMQIMTECSDGFLISEKDLELRGAGEMFGKKQSGDEGFVLAN--LYDDMKILRCAK 642 Query: 661 KDAKHILTQD 670 +A ++L + Sbjct: 643 LEANNMLQNE 652 >gi|320536875|ref|ZP_08036868.1| ATP-dependent DNA helicase RecG [Treponema phagedenis F0421] gi|320146258|gb|EFW37881.1| ATP-dependent DNA helicase RecG [Treponema phagedenis F0421] Length = 684 Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 215/656 (32%), Positives = 341/656 (51%), Gaps = 47/656 (7%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 D+L P ++ DR +++ + + + + F + R K+++ D G Sbjct: 34 DILLLWPRTWEDRTRVDFLADYDSVQKLQVRVKVVGQEWFGFGRMRTLKLIIQDECGSFA 93 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL------- 155 L + + L+N F G + V G +Y + Q F + Sbjct: 94 ELACFNRN-FLENAFPVGAEAVVYGSF------------YYKYGKLQSSAFEIEKPESAE 140 Query: 156 --IEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 I VY L GL +K+I AL + + + ++++K P+ + +H+P Sbjct: 141 QKILPVYPLTQGLGQAKLRKLIQTALRQYARGIDSELPAEVMEKYGLPTKQQILFFMHSP 200 Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN---- 268 + ++ T AR L ++E Q L Q + ++ E + A R Sbjct: 201 QTVQE---TEQARHALIFEEFFIFQTELGKRSIQRRGKLPYFSETESEFASSKPRQPVLT 257 Query: 269 ---------IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319 +PF+ T+ Q + ++ +D+ M R++QGDVGSGKTL A +A +E Sbjct: 258 QLQQQLLKRLPFALTEDQRTVTAEVNEDLEGTEPMARLIQGDVGSGKTLTAFLACLNVIE 317 Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379 GGQA +AP +LA+QH E K + + + +TGN+ R L +A G ++ Sbjct: 318 KGGQAAFLAPTELLARQHAENAAKLLKPLGVRLAFLTGNVKAKGRSHLLAALADGSIDLV 377 Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------APHVLLMTATPIP 432 +GTHALF + Y L L +VDEQHRFGV QR + QK PH L+M+ATPIP Sbjct: 378 LGTHALFSSGVSYKNLRLAVVDEQHRFGVLQRSAIIQKGVEGSKEKKPPHFLMMSATPIP 437 Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492 RTL L+ GD+DIS I P GRKP+ T + + ++V + ++ G++AY++ P I Sbjct: 438 RTLALSVFGDLDISVIKTMPEGRKPVITYVASQAKAEKVYTFIGKEIAAGRQAYFVYPLI 497 Query: 493 EEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551 E+ + + +S + + L + F +A+IH ++ + +++ +M+ FK G +L AT+VI Sbjct: 498 EDSESLSLKSAEQMYQYLQQGFPRHKVALIHSKIPENEQKEIMEEFKAGKIHILAATSVI 557 Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611 EVG+DV +A+ ++IE++E FGL+ LHQLRGRVGRG E S C L+Y ++ + TRLS++ Sbjct: 558 EVGVDVPNATCMVIEHSERFGLSALHQLRGRVGRGGEQSYCFLMYGKNITNDGKTRLSIM 617 Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 K T DGF+IAEEDLK R G+I GI+QSG F +A P +LL+ AR+ A IL Sbjct: 618 KETTDGFVIAEEDLKLRGPGDIGGIEQSGYLGFNLADPMRDYTLLQKARQAAFAIL 673 >gi|297617077|ref|YP_003702236.1| ATP-dependent DNA helicase RecG [Syntrophothermus lipocalidus DSM 12680] gi|297144914|gb|ADI01671.1| ATP-dependent DNA helicase RecG [Syntrophothermus lipocalidus DSM 12680] Length = 687 Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 213/645 (33%), Positives = 351/645 (54%), Gaps = 23/645 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEI 101 D+L++ P + D + +I ++ T+ G + S + + K L DG I Sbjct: 36 DMLWHVPRHYFDWAAAKGLDQIRVGQVNTVKGIVKSISLTKSARGTVVVKAWLEDGNAGI 95 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVY 160 ++F ++ +K V G I VTGK+ ++ + Y NS + + I Y Sbjct: 96 VAVWFNQR--YIKQVLHPGIPILVTGKVNMIRGNPELWVSQYETLNSGSPAYRVGIVPFY 153 Query: 161 SLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 GL+ + + I + + P+ I+ ++ I A +H P+ D E Sbjct: 154 PSTEGLNQRVLRSIAYQVVQEYAEKYPDIIDPVARKRIGLIDIESAIRNLHFPKNVLDVE 213 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEI---GIPINVEGKIAQKILRNIPFSPTKS 276 PAR RLA++ELL Q + ++ + + E+ G+ ++ ++++ +PF TK+ Sbjct: 214 ---PARRRLAFEELLLWQWNVRQLKNRARGELKGRGVAHLGGDELVEQVISALPFQLTKA 270 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q + +I D+++ + M R+LQGDVGSGKT+VA +A A G Q MAP ILA Q Sbjct: 271 QRRVLAEIRDDLTRPDPMNRLLQGDVGSGKTVVAALAAAKMAGDGYQIAFMAPTEILAVQ 330 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 HY + + I V ++TG P + +RK +E + I++GTHAL D++++ +L Sbjct: 331 HYNSLLRLVSRVPIRVALLTGKTPYSEKRKIVEMAKRHELDILVGTHALITDTVEFARLG 390 Query: 397 LVIVDEQHRFGVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 LV++DEQ RFGV+QR L K P L+M+ATPIPRTL L GD+D+S I E P GR Sbjct: 391 LVVIDEQQRFGVKQRASLVGKGKGYPDTLVMSATPIPRTLALALCGDMDVSIIDEIPPGR 450 Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 K ++T I ++ + ++ +++G++ Y +CP +EE ++ + + SL + Sbjct: 451 KRVRTFFITEAAKSKLYQFIRRQVNKGRQVYIVCPLVEESEKQDLLAA----TSLQQELA 506 Query: 516 SS------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 + + ++HGRM +KE+V + F+ G +L+ T+VIEVGIDV +A+++++E+AE Sbjct: 507 NCVFPELRVGLLHGRMKSPEKEAVAERFRQGLIDILVTTSVIEVGIDVANATVMVVEHAE 566 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629 FGLAQLHQLRGRVGRG + S CIL+ P ++ + RL +++ T DGF IA DL+ R Sbjct: 567 RFGLAQLHQLRGRVGRGGDQSYCILVGDPK-TEEARARLKLMETTNDGFEIARADLEMRG 625 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 G+ G++Q G+P+F +A LL+ ++ LT + DL Sbjct: 626 PGDFWGVRQHGLPQFRVADLGRDTHLLKTVHREIAAGLTLNEDLA 670 >gi|311742949|ref|ZP_07716757.1| DNA helicase RecG [Aeromicrobium marinum DSM 15272] gi|311313629|gb|EFQ83538.1| DNA helicase RecG [Aeromicrobium marinum DSM 15272] Length = 705 Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 210/657 (31%), Positives = 348/657 (52%), Gaps = 42/657 (6%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ---KRRPYKILLNDGTG 99 DLL ++P +++ + ++ E VT+ + +F+ +R ++++ D TG Sbjct: 34 DLLRHYPRRYLEVGALTPLGDLVEGMHVTVMARVKSAQNFRFGPGGRRTRSEVVVTDDTG 93 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-----FP 154 E++L FF + + G+ G + +NR+ + P Y + +P Sbjct: 94 ELSLTFF---NQAWRGTMQPGQVGLFAGVVGSFRNRLQLTQPDYDAVGDRLARGVVPIYP 150 Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 V S +V ++V+ LPE + + + + F +AEAF +H P Sbjct: 151 ATAKVSSWAIERAVGTCLDVVVD-------LPETLPESVRTEHGFVPVAEAFEAVHRP-- 201 Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE-GKIAQKILRNIPFSP 273 D A+ R ++E Q L R+ + G + + +PF+ Sbjct: 202 -HDVAAAYRAQARFRFEEAFVIQTVLAQRRRAAAEASATARPPRTGGLLDRFDARLPFAL 260 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T Q I D++ + M R+LQG+VGSGKT+VAL AM V+AGGQAV++AP +L Sbjct: 261 TAGQLEVAAQIEADLAAPHPMHRLLQGEVGSGKTVVALRAMLQVVDAGGQAVLLAPTEVL 320 Query: 334 AQQHYEFIKKYTQN-----------TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 A QH+ I + V ++TG+M R+ +L G+A I++GT Sbjct: 321 AAQHHRSISSMLGDLAASGLLGGAEGATRVRLLTGSMGAKARQASLLDAVSGEAGIVVGT 380 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLG 441 HAL D + + L LV+VDEQHRFGV+QR L +A T PHVL+MTATPIPRT+ +T G Sbjct: 381 HALLSDGVDFADLGLVVVDEQHRFGVEQRAALVDRAATRPHVLVMTATPIPRTVAMTVFG 440 Query: 442 DIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQI-EEKK 496 D++ S + E PAGR+PI+T ++P+ +D V +R++ + G++ Y + +I E + Sbjct: 441 DLETSVLRELPAGRQPIQTTVVPVADRPAWLDRVWQRVREEVGRGRQGYVVVSRIGESEA 500 Query: 497 ESNFRSVVERFNSLHEH--FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554 + RS+ + F L + +HGR+ +K++VM +F G +L+ATTVIEVG Sbjct: 501 TTTTRSLTDLFAELEVGPLLGLRLGFLHGRLPADEKDAVMRAFAAGDVDVLVATTVIEVG 560 Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614 +DV +A+++++ +A+ FG++QLHQLRGRVGRG+E C+L+ + ++ RL + +T Sbjct: 561 VDVPNATVMVVMDADRFGMSQLHQLRGRVGRGQEPGLCLLVTTTDAASSAAERLVAVAST 620 Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKHILTQD 670 DGF ++ D++ R EG++LG +QSG L + H+S++ AR A+ ++ D Sbjct: 621 TDGFELSRLDVELRSEGDVLGTRQSGFRSSLRLLSVVRHESVITEARTAAEAVVAAD 677 >gi|121609293|ref|YP_997100.1| ATP-dependent DNA helicase RecG [Verminephrobacter eiseniae EF01-2] gi|121553933|gb|ABM58082.1| ATP-dependent DNA helicase RecG [Verminephrobacter eiseniae EF01-2] Length = 750 Score = 344 bits (883), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 228/677 (33%), Positives = 348/677 (51%), Gaps = 54/677 (7%) Query: 40 RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99 R IDL + P + D ++ ++V I + QL+ RR + + D TG Sbjct: 71 RDIDLALHLPLRYEDETRITALASARNGQVVQIEATVLA-CEVQLRPRRQLLVQVEDATG 129 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEA 158 L FF K + G ++ + G++K M+HP + + P + Sbjct: 130 ACQLRFFSFYPSHQKTLAV-GTRLRIRGEVKGGFWGRQMLHPAFRVAGGE---LPAALTP 185 Query: 159 VYSLPTGLSVDLFKKIIVEALSRL-----------PVLPEWIEKDLLQKKSFPSIAEAFN 207 VY GL ++ +V AL R P + ++D Q++ F S+ EA Sbjct: 186 VYPSTAGLPQPYLRRAVVSALGRADLSDTLPPGAQPPCAHYTDEDG-QQRLF-SLREALT 243 Query: 208 IIHNPRKAKDF----EWTSPARERLAYDELLAGQIALL------------LMRKQFKKEI 251 +H+PR + + PA +RL +ELLA Q++ ++ +Q + Sbjct: 244 FLHHPRPDVALSTLQDHSHPAWQRLKAEELLAQQLSQQQSRRERARLRAAVLHEQPAADG 303 Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 P+ +++L +PF T +Q +I D++++ M R+LQGDVGSGKT+VA Sbjct: 304 SAPLQ------RQLLAVLPFDLTAAQRRVGAEIAADLARERPMHRLLQGDVGSGKTVVAA 357 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYE----FIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +A A++AG Q +MAP ILA QH+ +++ V + G + R Sbjct: 358 LAACQAIDAGWQCALMAPTEILAGQHFAKMIGWLEPLLAARGRCVAWLVGGQKKKERLAM 417 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHV 423 + G A +++GTHA+ Q+ +Q+ L L I+DEQHRFGV QRL L QK A PH+ Sbjct: 418 RALVESGAAALVVGTHAVIQEQVQFKNLALAIIDEQHRFGVAQRLALRQKLAAHGMEPHL 477 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+M+ATPIPRTL ++ D+DIS I + P GR PI T +I +R DEVI R+ + G+ Sbjct: 478 LMMSATPIPRTLAMSYYADLDISVIDQLPPGRTPIVTKLIADSRRDEVIARIGAQVQAGR 537 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542 + YW+CP IEE + + + L + ++H RM +K++VM F + Sbjct: 538 QVYWVCPLIEESEALDLSNATATHADLSAALPGVMVGLLHSRMGSAEKKAVMAQFSDARM 597 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--- 599 +L++TTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG S+C+LLY Sbjct: 598 GVLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYATNDSG 657 Query: 600 -LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 + +++ RL + T DGF IA DL+ R GE LG +QSG A LLE Sbjct: 658 RVGQSAKERLRAMVETSDGFEIARRDLEIRGPGEFLGARQSGDALLRFADLATDGHLLEW 717 Query: 659 ARKDAKHILTQDPDLTS 675 AR+ A +L + P L + Sbjct: 718 ARELAPVMLDRHPQLAA 734 >gi|262401992|ref|ZP_06078557.1| transcription-repair coupling factor [Vibrio sp. RC586] gi|262351964|gb|EEZ01095.1| transcription-repair coupling factor [Vibrio sp. RC586] Length = 418 Score = 344 bits (883), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 185/397 (46%), Positives = 259/397 (65%), Gaps = 6/397 (1%) Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340 + +I D+++ + M+R++QGDVGSGKTLVA +A A+E G Q +MAP +LA+QH Sbjct: 2 VAEIEADLAKPHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHALN 61 Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400 ++ + I V + G + R L RIA G+ +++GTHALFQ+ + + L LVI+ Sbjct: 62 FAQWLEPMGIQVGWLAGKLKGKARETELARIAGGEVKMVVGTHALFQEQVSFDHLALVII 121 Query: 401 DEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 DEQHRFGV QRL+L +K PH L+MTATPIPRTL +T+ D++ S I E P GR Sbjct: 122 DEQHRFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRT 181 Query: 457 PIKTVIIPINRIDEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 PI+TV IP + DE++ER++ L+EGK+AYW+C I+E + ++ E L Sbjct: 182 PIQTVAIPDTKRDEIVERIRHACLNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLP 241 Query: 516 S-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 I ++HGRM +K++VM +FKN LL+ATTVIEVG+DV +AS++IIEN E GLA Sbjct: 242 EVKIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLA 301 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG S C+LL+H PLSK + RL VL+ + DGF+IA+ DL+ R GE+L Sbjct: 302 QLHQLRGRVGRGTVASHCVLLFHAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELL 361 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671 G KQ+G+ F IA L+ ++ A+HI + P Sbjct: 362 GTKQTGLADFKIADLVRDQQLVPQVQRIARHIHERYP 398 >gi|159036815|ref|YP_001536068.1| ATP-dependent DNA helicase RecG [Salinispora arenicola CNS-205] gi|157915650|gb|ABV97077.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola CNS-205] Length = 733 Score = 344 bits (883), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 223/713 (31%), Positives = 366/713 (51%), Gaps = 64/713 (8%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PLS VG K + L+ ++ A DL+++ P + +R I + T Sbjct: 11 PLSKL--VGAKTAKALATHLDLHTAG-----DLIYHVPRRYDERGEHTDIRSLDVGEQAT 63 Query: 72 ITGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + + + + +++RR ++ + DG+G L F+ + GR GK+ Sbjct: 64 VLAQVQRTAVRPMRQRRGNLLEVTVGDGSGGALTLTFFGNQVWRERDLRPGRWGLFAGKV 123 Query: 130 KKLKNRIIMVHPHYIFHNSQDVN---------------FPLIEAVYSLPTGLSVDLFKKI 174 + + R + P Y+ + D P+ A ++PT + + ++ Sbjct: 124 TEFRGRRQLNGPEYVLLGTGDEGEVAASEEVEEFAGALIPVYPAAAAVPTWV-IARCVRV 182 Query: 175 IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234 +++ + P P + + ++ + A IH P E AR RL +DE Sbjct: 183 VLDTVD-PPADP--VPATVRTNRNLIGLGTALREIHRPSSK---EALYRARRRLKWDEAF 236 Query: 235 AGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 A Q+ L+ ++Q P V G + +P+ T Q +I D++ + Sbjct: 237 AVQLTLVQRKQQAADRPARPRPAVAGGLRDAFDARLPYQLTVGQRDVGIEIATDLATAHP 296 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY----EFIKKYTQNTQ 349 M R+LQG+VGSGKT+VAL AM V+AGGQA ++AP +LA QH+ + + + + Sbjct: 297 MHRLLQGEVGSGKTVVALRAMLQVVDAGGQAALLAPTEVLAAQHHRGILDLLGPLGRAGE 356 Query: 350 II-------VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402 + VE++TG++ A RR+AL + G A I++GTHAL + + + L LV+VDE Sbjct: 357 LDAVEHATRVELVTGSLGAAARRRALGEVRSGAAGIVLGTHALLYEGVDFADLGLVVVDE 416 Query: 403 QHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461 QHRFGV+QR L KA PHVL+MTATPIPRT+ +T GD+++S +++ P GR PI + Sbjct: 417 QHRFGVEQRDALRAKAEQPPHVLVMTATPIPRTVAMTVYGDLEVSTLSQLPRGRSPIASH 476 Query: 462 IIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517 ++P +D RL+ ++ G +AY +CP+I + S+ + E + Sbjct: 477 VVPAAEKPAFLDRAWRRLREEVTAGHQAYVVCPRIGDGPGSDEEAAQEDDTGRRPPLAVT 536 Query: 518 ---------------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 I ++HGR++ +K++VM SF G +L+ATTV+EVG+DV +A++ Sbjct: 537 EVAPLLAEGPLHGLRIGVLHGRLAADEKDAVMRSFAAGDLDVLVATTVVEVGVDVPNATV 596 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622 +I+ +A+ FG++QLHQLRGRVGRG C+L+ ++ RL + +T DGF +AE Sbjct: 597 MIVLDADRFGVSQLHQLRGRVGRGAAPGLCLLVTEATEGTSARERLDAVGSTTDGFKLAE 656 Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLT 674 DL+QR+EG++LG QSG L L D+ L+ AR +A ++ QDP+L Sbjct: 657 LDLEQRREGDVLGATQSGRRSHLRLLSLLRDADLIRDARAEAIDLVEQDPELA 709 >gi|302380535|ref|ZP_07269000.1| ATP-dependent DNA helicase RecG [Finegoldia magna ACS-171-V-Col3] gi|302311478|gb|EFK93494.1| ATP-dependent DNA helicase RecG [Finegoldia magna ACS-171-V-Col3] Length = 678 Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 228/667 (34%), Positives = 357/667 (53%), Gaps = 28/667 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI-SEERIVT 71 LS +G+GKK L + + N N DLL Y P + +R I + EE V Sbjct: 3 LSEIKGIGKK-KLEVLNSMGINNIN-----DLLNYFPYRYENRSIIKNIIDTRDEENCVI 56 Query: 72 ITGYISQHSSFQLQKRRPYKILLN-DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 +IS+ + L++ + D T +I++ +F ++N + GKI+ Sbjct: 57 KVKFISKPITKYLRRNLNLTTAIAFDDTSKISVSWF--NQPFIRNQILPNTTYYLYGKIQ 114 Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-----PVL 185 +++N+ + P I + +I +Y + G++ + K + A+ V+ Sbjct: 115 RVQNQFKISSP--ILSKTFGGKLGIIYPIYKVKKGITNNDMIKFVDFAIKHCIDEIKNVI 172 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 P + K+ I N I N K D+ AR L +E++ Q+A+ M+ Sbjct: 173 PYSMIKNY-------DIENKRNAIKNIHKPVDYAQFKRARTALVLEEVIIMQLAMKSMKT 225 Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 ++ I + I + ++ F TK Q AIKDI DM+ + RM R++QGDVGSG Sbjct: 226 SLNQQNYIKFQSDESI-NIFINSLKFELTKGQLEAIKDIEMDMTSEKRMNRLVQGDVGSG 284 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365 KT+VA A+ + +G Q+ MAP ILA QHYE + + I V ++ ++ ++ + Sbjct: 285 KTIVAEAAIFKSHSSGYQSAFMAPTDILATQHYESLSEDFSKFGIKVCLLKSDLTKSEKD 344 Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425 L+ I G +I+GTHA+ QD +++ +L LVI DEQHRFGV QR K++ K P VL+ Sbjct: 345 LVLKGIKSGYFDVIVGTHAIIQDFVEFKRLGLVITDEQHRFGVGQRKKISDKGQNPDVLV 404 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL L+ GD+DIS I E P GRK I+T + + + ++ + G +A Sbjct: 405 MTATPIPRTLALSYYGDLDISTINEMPKGRKTIETYSVGFSYEKRIAAFIRKQVDNGFQA 464 Query: 486 YWICPQIEEKKESNFRSVVERFNSL-HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y +CP IEE + +V E +N L E+F+ ++ ++HG+M +KE M F +G Sbjct: 465 YIVCPLIEESEALELENVTELYNRLTSEYFSDINVGMLHGKMKSSEKEETMKDFVDGKTN 524 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V A++I+I NAE FGL+QLHQLRGRVGR + S CIL+ + S Sbjct: 525 ILVSTTVIEVGVNVRKANVIVIYNAERFGLSQLHQLRGRVGRSSDQSYCILINNAH-SDE 583 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R++++ T GF ++++DL R G++LG +QSG+P IA E L+E A Sbjct: 584 QMERMNIMVKTNSGFELSQKDLMMRGSGDLLGTRQSGIPLLNIADLEKDYDLIEKAAVIT 643 Query: 664 KHILTQD 670 +I T D Sbjct: 644 DYIYTND 650 >gi|326381570|ref|ZP_08203264.1| ATP-dependent DNA helicase RecG [Gordonia neofelifaecis NRRL B-59395] gi|326199817|gb|EGD56997.1| ATP-dependent DNA helicase RecG [Gordonia neofelifaecis NRRL B-59395] Length = 756 Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 224/683 (32%), Positives = 347/683 (50%), Gaps = 80/683 (11%) Query: 70 VTITGYISQHSSFQLQKR--RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127 +T+ G I + +++R + K+++NDG + FF + ++ V G ++ + G Sbjct: 58 ITVIGRIQKAQMISMKRRYGQFLKVVVNDGRADYEASFFNAR--WIQKVLKPGTRVAMAG 115 Query: 128 KIKKLKNRIIMVHPHYIFHNSQDV-----NFPLIEAVY-------------SLPTGLSVD 169 +K +++I + HP ++ D N +I +Y S + Sbjct: 116 TVKLFRDQIQLSHPDWMVMPEDDGIDVVGNAAMIGEMYADAAESGDEKTHGSTASADDAR 175 Query: 170 LFKKIIVEALSRLPVLPEW-------------------IEKDLLQKKSFPSIAEAFNIIH 210 F + I+ + W + D + + EA + +H Sbjct: 176 SFARDIIPMYPATKDVQTWEIWRAVRQVLADTVPAEDPLTDDQRTSRGLITGDEAIHRVH 235 Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI-NVEGKIAQKILRNI 269 P +D E AR RL +DE LA Q L R E P +V G + ++L + Sbjct: 236 LPENLEDIE---AARARLKFDEALAVQTELARRRLSAVAESARPCPHVPGGLEDQLLDRL 292 Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T Q + +I +D++ ++ M R+LQG+VGSGKTLV+L+AM V+ G Q I+AP Sbjct: 293 PFELTGGQRDVLLEIGEDLADEHPMSRLLQGEVGSGKTLVSLLAMLRVVDNGHQCAILAP 352 Query: 330 IGILAQQHYEFIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378 +LA QHY + + V ++TG++ A +R+ L G A I Sbjct: 353 TEVLAAQHYRTVMTMLGDLARAGELGAADGATRVGLLTGSLGTATKRQVLLDAVTGDAGI 412 Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA---TAPHVLLMTATPIPRTL 435 +IGTHAL ++ ++++ L +V+VDEQHRFGV+QR L K + PH L+MTATPIPRT+ Sbjct: 413 VIGTHALLEEHVEFFDLGMVVVDEQHRFGVEQRDVLRSKGRDDSRPHFLVMTATPIPRTV 472 Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQI 492 + + GD+D S +TE P GR+PI T ++P+ + +D V R + G++ Y +C +I Sbjct: 473 AMITFGDLDTSVMTELPRGRQPITTSVVPMRKQAWVDRVWARANEEIDAGRQVYVVCTKI 532 Query: 493 EEKKESNFRSVVERFNSLHEHFTSS-----------------IAIIHGRMSDIDKESVMD 535 +++ + RS S E T S I I+HGR+ +K VMD Sbjct: 533 GDEQTNAKRSKKSAKESEAEDDTISVLDLAEQLAAGPLAGRRIGILHGRLPADEKNDVMD 592 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +F G +L+ATTVIEVG+DV +A+++ I NAE FG++QLHQLRGRVGRGE C+L+ Sbjct: 593 AFTRGEIDVLVATTVIEVGVDVPNATMMAIVNAERFGVSQLHQLRGRVGRGEHAGLCLLM 652 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS- 654 S RL ++ + DGF +A DL QR+EG+ILG QSG L L D+ Sbjct: 653 TTAGDMGQSMERLRAVEASSDGFELARVDLAQRREGDILGALQSGGKSSLSFLSLLDDTD 712 Query: 655 LLEIARKDAKHILTQDPDLTSVR 677 ++ AR A+ I+ DPDL + R Sbjct: 713 VIADARDLAEQIVLDDPDLVAHR 735 >gi|290957125|ref|YP_003488307.1| ATP-dependent DNA helicase [Streptomyces scabiei 87.22] gi|260646651|emb|CBG69748.1| putative ATP-dependent DNA helicase [Streptomyces scabiei 87.22] Length = 751 Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 231/725 (31%), Positives = 373/725 (51%), Gaps = 79/725 (10%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ---HSSFQLQKRRP----YKILLN 95 DLL ++P + +R +++++ + VT+ ++ H+ + R ++ + Sbjct: 39 DLLHHYPRRYEERGRLTRLADLPMDEHVTVVAQVADARLHTFASAKAPRGKGQRLEVTIT 98 Query: 96 DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF----HNSQDV 151 DG+G + L+FF G + GK+ R+ + HP Y +S+D Sbjct: 99 DGSGRLQLVFFGHGVHKPHKDLLPGTRALFAGKVSVFNRRLQLAHPAYELLRGEGDSEDT 158 Query: 152 N---------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSI 202 P+ A L + + ++ A + LP+ L + + S+ Sbjct: 159 ETVGTWAGALIPIYPATAKLESWKIAKAVQTVLPSAQEAVDPLPD----SLREGRGLVSL 214 Query: 203 AEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA 262 +A IH P D + AR+RL +DE Q+AL R + +P + Sbjct: 215 PDALVKIHRPHTKADRD---SARDRLKWDEAFVLQVALARRRHADSQ---LPAVARRPAS 268 Query: 263 QKILR----NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318 +L +PF+ T Q ++I D++ ++ M R+LQG+VGSGKTLVAL AM A V Sbjct: 269 DGLLTAFDARLPFTLTDGQRKVSREIFDDLATEHPMHRLLQGEVGSGKTLVALRAMLAVV 328 Query: 319 EAGGQAVIMAPIGILAQQHY----EFIKKYTQNTQI-------IVEIITGNMPQAHRRKA 367 +AGGQA ++AP +LAQQH+ E + + + + V ++TG+M A RR+A Sbjct: 329 DAGGQAAMLAPTEVLAQQHHRSVTEMMGELAEGGMLGGSEHATKVVLLTGSMGAAGRRQA 388 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLM 426 L + G+A I+IGTHAL +D +Q++ L LV+VDEQHRFGV+QR L K PH+L+M Sbjct: 389 LLDLVTGEAGIVIGTHALIEDKVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVM 448 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEG 482 TATPIPRT+ +T GD+D S + + PAGR PI + ++P + ER++ + G Sbjct: 449 TATPIPRTVAMTVFGDLDTSVLDQLPAGRSPIASHVVPAADKPHFLARAWERVREEVENG 508 Query: 483 KKAYWICPQIEEK------------KESNFRS------------VVERFNSLHEHFTSS- 517 +AY +CP+I + K+S +S V++ + L + Sbjct: 509 HQAYVVCPRIGDDVDEPADPNRTGAKKSGGKSPEDEAEKRPPLAVLDVADQLAKGPLQGL 568 Query: 518 -IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 + ++HGRM DK++VM F G +L+ATTVIEVG++V +A+ ++I +A+ FG++QL Sbjct: 569 RVEVLHGRMHPDDKDAVMRRFAAGETHVLVATTVIEVGVNVPNATAMVIMDADRFGVSQL 628 Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636 HQLRGRVGRG C+L+ P + + RL + T DGF ++ DL+QR+EG++LG Sbjct: 629 HQLRGRVGRGSAAGLCLLVTEMPEASPARQRLGAVAATLDGFELSRIDLEQRREGDVLGQ 688 Query: 637 KQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695 QSG L + D ++ AR++A ++ DPDL + ++R L E Q Sbjct: 689 AQSGARTSLRMLTVIDDEEIIAEARQEAAAVVAADPDLDHL--PALRTALDALLDEEREQ 746 Query: 696 FIRAG 700 ++ G Sbjct: 747 YLDKG 751 >gi|154482960|ref|ZP_02025408.1| hypothetical protein EUBVEN_00658 [Eubacterium ventriosum ATCC 27560] gi|149736244|gb|EDM52130.1| hypothetical protein EUBVEN_00658 [Eubacterium ventriosum ATCC 27560] Length = 674 Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 220/673 (32%), Positives = 364/673 (54%), Gaps = 27/673 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEISEERIVT 71 L+ +G+G+K K A + DLL Y+P + D P I ++ +R Sbjct: 3 LNNLKGIGEKTEKLFYK------AGVEKVNDLLRYYPR-YYDVFEEPVLIRDLECDRTQA 55 Query: 72 ITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 I G + + S +++ R +++ L D G+ ++ + LK G G Sbjct: 56 IKGTVVREVS--VKRVRNLQVVTGYLRDERGDAIKATWF-NSPYLKGKLTIGSTFIFRGF 112 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188 +K+ + + P + ++ VY L +GL+ ++ +K + +AL +L E+ Sbjct: 113 VKENYSNFSIEQPKIFGIAEYNKKKGEMQPVYPLVSGLTNNMVQKAVKQAL-KLVETEEF 171 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248 + + + K + +A IH P D AR+RL +DE + ++ + Sbjct: 172 LPEKIRNKYGLEGLQQAIEHIHYP---TDKNQLYSARKRLIFDEFFMFIYNIRNLKDKNT 228 Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 + I VE K + ++ N+P+ T +Q+ ++I +D+S M R++QGDVGSGKT+ Sbjct: 229 EIHNRHILVEPKEVKTLINNLPYELTNAQKRTWEEIKRDISSTKVMNRLIQGDVGSGKTI 288 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHR 364 +A A+ A GQ +MAP +LA+QHY E IK++ N +V + G+M + Sbjct: 289 IAFFALITAALNNGQGAMMAPTEVLARQHYDNLIELIKEHNINVNPVV--LVGSMTAKEK 346 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424 R+A + I G A IIIGTHAL Q+ + Y L +V+ DEQHRFGV+QR +++K PH++ Sbjct: 347 REAYKVIESGDADIIIGTHALIQEKVNYNNLTMVVTDEQHRFGVRQREAISEKGEHPHIM 406 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 +M+ATPIPRTL + GD+DIS I E PA R PI ++ + + + +++G++ Sbjct: 407 VMSATPIPRTLAIIMYGDLDISVIDELPANRLPIANCVVGTDYRPNAYDFMTKQIAKGRQ 466 Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTC 542 Y ICP +E + +V+E L S+ I +HGRM +K +MD F N Sbjct: 467 VYVICPTVEYSEAVEGENVIEYAEKLKRIMPVSVNIEFLHGRMKPAEKNEIMDRFANNQI 526 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 ++L++TTV+EVG++V +A+++++ENAE FGLAQLHQLRGRVGRG+ S CI + + K Sbjct: 527 QILVSTTVVEVGVNVPNATVMMVENAERFGLAQLHQLRGRVGRGKYQSYCIFI-NGSGKK 585 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662 + RL++L + DGFLIA EDLK R G+ G++QSG +F + ++L+ A + Sbjct: 586 EALERLNILCKSNDGFLIANEDLKLRGPGDFFGVRQSGDFEFRLGDIMNDANILKQASEA 645 Query: 663 AKHILTQDPDLTS 675 + IL ++ +++ Sbjct: 646 VELILNEEVEISD 658 >gi|229552461|ref|ZP_04441186.1| DNA helicase RecG [Lactobacillus rhamnosus LMS2-1] gi|258539832|ref|YP_003174331.1| ATP-dependent DNA helicase RecG [Lactobacillus rhamnosus Lc 705] gi|229314198|gb|EEN80171.1| DNA helicase RecG [Lactobacillus rhamnosus LMS2-1] gi|257151508|emb|CAR90480.1| ATP-dependent DNA helicase RecG [Lactobacillus rhamnosus Lc 705] Length = 679 Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 209/650 (32%), Positives = 358/650 (55%), Gaps = 19/650 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLN---DGTG 99 D+LFY P + D + ++E +++ +TI G + + + P++ +N Sbjct: 31 DVLFYFPFRYDDLKVK-DLAEAADQEKLTIKGVVVADPV--ISRFGPHRSRVNVKLQVER 87 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159 + L+ FY + LK+ F G + V GK + + + + SQD P + A+ Sbjct: 88 SVILVTFYNQP-WLKDRFQMGDEAAVFGKWDAQRRSLTGMK--ILATQSQDQ--PSMAAI 142 Query: 160 YSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 Y++ + + ++I A +R + + I + S + + +H P ++ Sbjct: 143 YTVNKNVRMGTLLELIKAAWARDHQNIHDLIPASIRAHYRLMSDEQLVHGMHFPDTQQE- 201 Query: 219 EWTSPARERLAYDELLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 AR + E Q+ + +++ G+ I + + + ++ +PFS T +Q Sbjct: 202 --AKAARRSGVFREFFLFQLQIQALKQLNDNANNGLAIPYDNQALRALIATLPFSLTNAQ 259 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + + +I DM + N M R+LQGDVGSGKT+VA I + AAV AG QA +M P +LA+QH Sbjct: 260 KRVVNEICADMRRPNHMNRLLQGDVGSGKTIVAAIVLYAAVTAGYQAALMVPTEVLAEQH 319 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 + ++ + + + ++TG+ RR+ L + G ++IIGTHAL Q + + L L Sbjct: 320 FAKLEALFADFPVKLGLLTGSTTAKKRREMLAELRDGTLNLIIGTHALIQKGVDFKALGL 379 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 V++DEQHRFGV QR L +K P +L MTATPIPRTL +T+ G++D+S I E PAGRKP Sbjct: 380 VVIDEQHRFGVNQRKILQEKGQKPDLLSMTATPIPRTLAITAYGEMDVSTIDELPAGRKP 439 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--T 515 I T + N++ +V ++ + G + + I P I E ++ + ++ + F + + Sbjct: 440 ITTTWLRKNQVGQVYRLIRSQVQAGSQVFAITPLIAESEKVDLQNAEQLFADMQKAVGDV 499 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 +A++HG+M +K+ +M +F +G +L++TTV+EVG+DV +A+++ I +A+ FGL+Q Sbjct: 500 GQVALLHGKMKPDEKDQIMRAFSHGDIAVLVSTTVVEVGVDVPNATVMAIFDADRFGLSQ 559 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG + + C+L+ P ++ R+ ++ T DGFL+A++DL+ R G+I G Sbjct: 560 LHQLRGRVGRGNKAAQCLLIADPK-NEQGIARMQIMTKTNDGFLLAQKDLEMRGSGDIFG 618 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685 KQSG+P+F +A P LE+A++ I DP L + Q + L Sbjct: 619 DKQSGLPEFKVADPVGDFPTLEVAQQIVAKIFKTDPHLLAPEHQPLAAYL 668 >gi|154496256|ref|ZP_02034952.1| hypothetical protein BACCAP_00541 [Bacteroides capillosus ATCC 29799] gi|150274339|gb|EDN01416.1| hypothetical protein BACCAP_00541 [Bacteroides capillosus ATCC 29799] Length = 694 Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 227/650 (34%), Positives = 357/650 (54%), Gaps = 31/650 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR--RPYKILLNDGTGE 100 +LL Y+P S+ DR I EE+ V + ++++ ++ K+ + D T Sbjct: 33 NLLGYYPRSYEDRTKISTIDGAPEEQPVCVAAFVAETPRVSHIRKGLELVKVKVADETAV 92 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIEAV 159 +T+ FF + +++ G GK+++ + M +P +F F I V Sbjct: 93 MTVTFFNQA--YVRDALRLGESYIFYGKVERQGRQRQMTNP--VFEREGAARFTGCIMPV 148 Query: 160 YSLPTGLSVDLFKKI---IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216 Y L G+S +L + V+ +R +PE + +++ S + + IH P + Sbjct: 149 YPLTAGISNNLLAGLARRCVDECARQ--VPELLPEEVRLAHSLAQVEFSCRNIHFP---E 203 Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276 +E AR RL ++E + L+R ++ G VE + L +PFS T + Sbjct: 204 SWEALEIARRRLIFEEFFLLSCGMSLLRT--GRDRGAGPAVENRDLTPFLSLLPFSFTGA 261 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q + + DM+ M R++QGDVGSGKT VA A + G Q+ +MAP ILA+Q Sbjct: 262 QRRTVDEAAADMASGRPMNRLVQGDVGSGKTAVAAACAWLAWQGGWQSAMMAPTEILAEQ 321 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 H+ + + V ++TG+M A +RKA +A G+ +++GTHAL + +++ KL Sbjct: 322 HFRSLSSLLSPAGMRVGLLTGSMKAAEKRKAKAALAAGEVDLMVGTHALLSEGVEFRKLG 381 Query: 397 LVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 LVI DEQHRFGV QR L KA PHVL+M+ATPIPRTL L GD+D+S I E P Sbjct: 382 LVITDEQHRFGVAQRAALAAKADGGLRPHVLVMSATPIPRTLALIVYGDLDVSVIDELPP 441 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--------SNFRSVVE 505 GR P++T ++ ++ + ++ +++EG++AY +CP +EE + ++ ++V Sbjct: 442 GRTPVETFVVGEDKRQRMYGFVRKLVAEGRQAYIVCPAVEENPDGEDAFGGLADLKAVTT 501 Query: 506 RFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 +L +A +HG+M DK++VM +F G +L++TTVIEVG+DV +A+++ Sbjct: 502 YAETLKTQVFPDLRVAFVHGKMKPKDKDAVMSAFSAGDIDVLVSTTVIEVGVDVPNAALM 561 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623 I+ENAE FGL+QLHQLRGRVGRG+ S C+L+ S++S RL VL +T DGF IAEE Sbjct: 562 IVENAERFGLSQLHQLRGRVGRGKHKSYCVLMTATH-SQDSRARLKVLASTTDGFKIAEE 620 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DLK R G+ G +Q G+P+ IA LL+ A++ A+ +L DP L Sbjct: 621 DLKLRGPGDFFGSRQHGLPQLHIADLAGDVRLLKEAQQAARDLLEADPGL 670 >gi|199597141|ref|ZP_03210573.1| RecG-like helicase [Lactobacillus rhamnosus HN001] gi|258508655|ref|YP_003171406.1| ATP-dependent DNA helicase RecG [Lactobacillus rhamnosus GG] gi|199591945|gb|EDZ00020.1| RecG-like helicase [Lactobacillus rhamnosus HN001] gi|257148582|emb|CAR87555.1| ATP-dependent DNA helicase RecG [Lactobacillus rhamnosus GG] gi|259649961|dbj|BAI42123.1| DNA helicase RecG [Lactobacillus rhamnosus GG] Length = 679 Score = 344 bits (882), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 212/662 (32%), Positives = 358/662 (54%), Gaps = 43/662 (6%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLN---DGTG 99 D+LFY P + D + ++E +++ +TI G + + + P++ +N Sbjct: 31 DVLFYFPFRYDDLKVK-DLAEAADQEKLTIKGVVVADPV--ISRFGPHRSRVNVKLQVER 87 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159 + L+ FY + LK+ F G + V GK + + + +Q N P + A+ Sbjct: 88 SVILVTFYNQP-WLKDRFQMGDEAAVFGKWDAQRRSLTGMK----ILATQSQNQPSMAAI 142 Query: 160 YSLPTGLSVDLFKKIIVEALSR-----LPVLPEWI--------EKDLLQKKSFPSIAEAF 206 Y++ + + ++I A +R ++P I ++ L+ FP Sbjct: 143 YTVNKNVRMGTLLELIKAAWARDHQNIHDLIPASIRAHYRLMSDEQLVHGMHFPD----- 197 Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKI 265 P++AK AR + E Q+ + +++ G+ I + + + Sbjct: 198 ----TPQEAK------AARRSGVFREFFLFQLQIQALKQLNDNANNGLAIPYDNHALRAL 247 Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 + +PFS T +Q+ + +I DM + N M R+LQGDVGSGKT+VA I + AAV AG QA Sbjct: 248 IATLPFSLTNAQKRVVNEICADMRRPNHMNRLLQGDVGSGKTIVAAIVLYAAVTAGYQAA 307 Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +M P +LA+QH+ ++ + + + ++TG+ RR+ L + G ++IIGTHAL Sbjct: 308 LMVPTEVLAEQHFAKLEALFADFPVKLGLLTGSTTAKKRREMLAELRDGTLNLIIGTHAL 367 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445 Q + + L LV++DEQHRFGV QR L +K P +L MTATPIPRTL +T+ G++D+ Sbjct: 368 IQKGVDFKALGLVVIDEQHRFGVNQRKILQEKGQKPDLLSMTATPIPRTLAITAYGEMDV 427 Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 S I E PAGRKPI T + N++ +V ++ + G + + I P I E ++ + ++ + Sbjct: 428 STIDELPAGRKPITTTWLRKNQVGQVYRLIRSQVQAGSQVFAITPLIAESEKVDLQNAEQ 487 Query: 506 RFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 F + + +A++HG+M +K+ +M +F +G +L++TTV+EVG+DV +A+++ Sbjct: 488 LFADMQKAVGDVGQVALLHGKMKPDEKDQIMRAFSHGDIAVLVSTTVVEVGVDVPNATVM 547 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623 I +A+ FGL+QLHQLRGRVGRG + + C+L+ P ++ R+ ++ T DGFL+A++ Sbjct: 548 AIFDADRFGLSQLHQLRGRVGRGSKAAQCLLIADPK-NEQGIARMQIMTKTNDGFLLAQK 606 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683 DL+ R G+I G KQSG+P+F +A P LE A++ I DP L + Q + Sbjct: 607 DLEMRGSGDIFGDKQSGLPEFKVADPVGDFPTLEAAQQIVAKIFKTDPHLLAPEHQPLAA 666 Query: 684 LL 685 L Sbjct: 667 YL 668 >gi|237742689|ref|ZP_04573170.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 4_1_13] gi|294784786|ref|ZP_06750074.1| ATP-dependent DNA helicase RecG [Fusobacterium sp. 3_1_27] gi|229430337|gb|EEO40549.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 4_1_13] gi|294486500|gb|EFG33862.1| ATP-dependent DNA helicase RecG [Fusobacterium sp. 3_1_27] Length = 689 Score = 344 bits (882), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 226/608 (37%), Positives = 349/608 (57%), Gaps = 20/608 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK-RRPYKILLNDGTGEI 101 DL++Y P ++ DR I E+ V + + + ++ ++ K ++ DGTG + Sbjct: 38 DLIYYFPRAYDDRTNIKSIGELKFNEYVVLKATVMSVVNLTVRSGKKIVKAMVTDGTGIM 97 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVY 160 +L+F +K G + G+ KK +++P Y +F Q V+ I +Y Sbjct: 98 EILWF--GMPYIKKSLKIGEEYLFIGQTKK-SAVFQLINPEYKLFSGQQKVSENEILPIY 154 Query: 161 SLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 S ++ + +K++ + L L E I L+++ A IH P K+ E Sbjct: 155 SSNKNITQNSLRKLVEKFLVNFLNYFEENIPNKLIKEYRIMERKRAIKNIHYPISMKEIE 214 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI--AQKILRNIPFSPTKSQ 277 A+ R A +ELL ++ +L R + VEGK ++ L + F+ T +Q Sbjct: 215 ---EAKRRFAIEELLILELGILKNRFIIENSNSKNYEVEGKKEKVREFLSQLTFNLTNAQ 271 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + IK+I ++S + R++QGDVGSGKT+VA++ + E G Q +MAP ILA QH Sbjct: 272 KKVIKEIYDEISNGKIVNRLIQGDVGSGKTVVAMVMLIYMAENGYQGALMAPTEILANQH 331 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y IK+ + + VE++T ++ + + LE IA+G+ I+IGTH+L +D++ + KL L Sbjct: 332 YLGIKERLEKIGLRVELLTSSIKGKKKNEILEGIANGEIDIVIGTHSLIEDNVIFKKLGL 391 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +++DEQHRFGV QR KL +K ++L+M+ATPIPR+L L+ GD+D+S I E P GR P Sbjct: 392 IVIDEQHRFGVNQRNKLREKGFLGNLLVMSATPIPRSLALSIYGDLDLSIIDELPPGRTP 451 Query: 458 IKTVIIPINRIDEVIERLKVVL----SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 I+T I DE +E++ + +EG +AY++ P IE + +SV + + Sbjct: 452 IRTKWIA---NDEDLEKMYNFIYKKVNEGNQAYFVAPLIETSDKMALKSVDKVSEEIERK 508 Query: 514 FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 F++ I IIHG+M +K+ VM FKN +LIATTVIEVGIDV ++I+ I NAE FG Sbjct: 509 FSNKKIGIIHGKMKAKEKDDVMLKFKNKEYDILIATTVIEVGIDVPASTIMTIYNAERFG 568 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 L+ LHQLRGRVGRG + S C L+ + +++NS RLS+++ TEDGF IAEEDLK R GE Sbjct: 569 LSALHQLRGRVGRGSKQSYCFLISN-SITENSKQRLSIMEETEDGFRIAEEDLKLRNSGE 627 Query: 633 ILGIKQSG 640 I G++QSG Sbjct: 628 IFGLRQSG 635 >gi|326693689|ref|ZP_08230694.1| ATP-dependent DNA helicase RecG [Leuconostoc argentinum KCTC 3773] Length = 676 Score = 343 bits (881), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 218/637 (34%), Positives = 355/637 (55%), Gaps = 27/637 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRRPYKILLNDGTG 99 DLL Y P + D R + SE + VT G +S + F + + + +L+ Sbjct: 32 DLLGYFPFRYEDLGER-RPSETLDGEKVTFKGVVSAPPVVTRFGKKNQTHFGLLIEHENV 90 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159 +T F+ + + +N+ G+++ V G K + + N+ ++ + Sbjct: 91 RVT---FFNQPWLAQNIAV-GQEVAVYGTYNAAKASLTGMKMINATANA-------LDPI 139 Query: 160 YSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 Y ++ + ++ A + + +P+ + L QK +H P D Sbjct: 140 YPASKQITAKTIRNLVELAWADVRGTMPDLVPLSLRQKYRLLDRNTQIEHMHFP---TDM 196 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 AR A++E Q+ L L++ +K G I + + +K +PF+ T +Q+ Sbjct: 197 PAAKAARRSAAFEEFFIFQMRLQLLKLADQKFAGEGIAYDAQALKKFEAGLPFTLTTAQK 256 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 I +ILQD + M R+LQGDVGSGKT+VA +AM A V AG QA IMAP ILAQQH Sbjct: 257 KVIAEILQDQHRPRHMNRLLQGDVGSGKTVVAAMAMYAVVTAGLQAAIMAPTEILAQQHA 316 Query: 339 EFIKKY--TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 + + Q+ +E++T + A RR+ LE + +G+ I++GTHAL Q + ++ L Sbjct: 317 LNLAQLFDRAGVQLRIELLTSGLRAAARRQILEDLENGEIDILVGTHALLQPDVAFHHLG 376 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 L ++DEQHRFGV QR L + P +L MTATPIPRTL +T+ G++D+S I + P+GRK Sbjct: 377 LAVIDEQHRFGVNQRAALRENGVNPDILAMTATPIPRTLSITAYGEMDVSIIDQLPSGRK 436 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 I T + N++D + +K L +G +AY + P IEE + + ++ + ++ Sbjct: 437 AIATKRLSHNQLDAALAFVKQQLDDGAQAYIVTPLIEESESLDVQNATAMYEAMQLELPE 496 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 +I ++HGR+S+ +K+ +M FK ++L+ATTVIEVG+DV +ASI++I +A+ FGLAQ Sbjct: 497 YTIGLLHGRLSNDEKKQLMADFKANRIQVLVATTVIEVGVDVPNASIMLILDADRFGLAQ 556 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEI 633 LHQLRGRVGRG S +L+ P K Y RL + T +GF++A++DL+ R G+I Sbjct: 557 LHQLRGRVGRGSRQSYTLLIADP---KTDYGTARLDAMVATTNGFVLAQKDLELRGSGDI 613 Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670 LG KQSG+P+F++ P +++EIA+++A +++Q+ Sbjct: 614 LGTKQSGVPEFVVGDPIKDLTMMEIAQQEAIALVSQE 650 >gi|296111735|ref|YP_003622117.1| ATP-dependent DNA helicase RecG [Leuconostoc kimchii IMSNU 11154] gi|295833267|gb|ADG41148.1| ATP-dependent DNA helicase RecG [Leuconostoc kimchii IMSNU 11154] Length = 676 Score = 343 bits (881), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 183/445 (41%), Positives = 282/445 (63%), Gaps = 8/445 (1%) Query: 230 YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289 ++E Q+ L L++ + G IN + +K +PF T +Q+ I +ILQD Sbjct: 208 FEEFFVFQMRLQLLKLADQNFAGEGINYDTLALEKFEAELPFDLTPAQQKVISEILQDQK 267 Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349 + M R+LQGDVGSGKT+VA +AM A V AG QA IMAP ILAQQH + + +N Sbjct: 268 RPRHMNRLLQGDVGSGKTVVAAMAMYAVVTAGMQAAIMAPTEILAQQHALNLAQLFENAG 327 Query: 350 II--VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407 + VE++T + A RR+ LE + G+ I++GTHAL Q + ++ L L ++DEQHRFG Sbjct: 328 VSLRVELLTSGLKVAARRQLLEDLESGEIDILVGTHALLQPDVAFHHLGLAVIDEQHRFG 387 Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467 V+QR L + P +L MTATPIPRTL +T+ G++D+S I + P GRK I+T + N+ Sbjct: 388 VKQRAALRENGVNPDILAMTATPIPRTLSITAYGEMDVSVIDQLPIGRKAIQTTRMSHNQ 447 Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526 +D I +K + G +AY + P IEE + + ++ + ++ F ++ ++HGR+S Sbjct: 448 LDHAIAFVKKQIDAGAQAYVVTPLIEESESLDVQNATAMYEAMQLEFPQYTVGLLHGRLS 507 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 + +K+++M FK ++L+ATTVIEVG+DV +A++++I +A+ FGLAQLHQLRGRVGRG Sbjct: 508 NDEKKALMADFKANHIQILVATTVIEVGVDVPNATVMLILDADRFGLAQLHQLRGRVGRG 567 Query: 587 EEISSCILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644 S IL+ P K Y RL + T +GF++A+ DL+ R G+ILG KQSG+P+F Sbjct: 568 HRQSYTILVADP---KTDYGTARLDAMVETTNGFILAQRDLELRGSGDILGTKQSGVPEF 624 Query: 645 LIAQPELHDSLLEIARKDAKHILTQ 669 ++ P +++EIA+++A +++Q Sbjct: 625 VVGDPIKDLTMMEIAQQEAITLVSQ 649 >gi|239631975|ref|ZP_04675006.1| ATP-dependent DNA helicase RecG [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526440|gb|EEQ65441.1| ATP-dependent DNA helicase RecG [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 453 Score = 343 bits (881), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 171/424 (40%), Positives = 273/424 (64%), Gaps = 3/424 (0%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G+ I + + + ++ +PF+ T +Q+ + +I DM + N M R+LQGDVGSGKT+VA Sbjct: 8 GLAIPYDNQALRALIATLPFALTNAQKRVVNEICADMRRPNHMNRLLQGDVGSGKTIVAA 67 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 I + AAV AG QA +M P +LA+QH+ + K ++ + + ++TG+ RR+ L + Sbjct: 68 IVLYAAVTAGFQAALMVPTEVLAEQHFAKLTKLFKDFPVKLGLLTGSTSTKKRRELLSEL 127 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 G+ ++IIGTHAL Q + ++ L LV++DEQHRFGV QR L +K P +L MTATPI Sbjct: 128 RDGRLNLIIGTHALIQKGVDFHALGLVVIDEQHRFGVNQRKILQEKGQKPDLLSMTATPI 187 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491 PRTL +T+ G++D+S I E PAGRKPI T + N+ID+V ++ + G + + I P Sbjct: 188 PRTLAITAYGEMDVSTIDELPAGRKPIATTWLRKNQIDQVYRIIREQVQSGSQVFAITPL 247 Query: 492 IEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549 I E ++ + ++ + F + + + +A++HG+M +K+ +M +F +G +L++TT Sbjct: 248 IAESEKIDLQNAEQLFVDMQKAVGNLGPVALLHGQMKPDEKDQIMRAFSDGKIAVLVSTT 307 Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609 V+EVG+DV +A+++ I +A+ FGL+QLHQLRGRVGRG++ + C+L+ P ++ R+ Sbjct: 308 VVEVGVDVPNATVMAIFDADRFGLSQLHQLRGRVGRGQKAAQCLLIADPK-NEQGIARME 366 Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669 ++ T DGFL+A++DL+ R G+I G KQSG+P+F +A P LE A+K I Sbjct: 367 IMTKTNDGFLLAQKDLEMRGSGDIFGDKQSGLPEFKVADPVGDFPTLEAAQKIVAQIFKT 426 Query: 670 DPDL 673 DP L Sbjct: 427 DPHL 430 >gi|224542838|ref|ZP_03683377.1| hypothetical protein CATMIT_02030 [Catenibacterium mitsuokai DSM 15897] gi|224524250|gb|EEF93355.1| hypothetical protein CATMIT_02030 [Catenibacterium mitsuokai DSM 15897] Length = 676 Score = 343 bits (881), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 194/516 (37%), Positives = 299/516 (57%), Gaps = 18/516 (3%) Query: 156 IEAVYSLPTGLSVDLFKKIIVEALS-RLPV---LPEWIEK--DLLQKKSFPSIAEAFNII 209 I VYSL GL+ F + + + L +P+ LP I + DL+ KK EA + Sbjct: 139 ITPVYSLKDGLTSHAFSQYVKKVLGMNIPIEDGLPIEIRETVDLMSKK------EALYAV 192 Query: 210 HNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269 H P + E + L Y+E L ++AL R Q ++E+G + + + Sbjct: 193 HFPM---NHEQLQKGIKTLKYEEFLNFELALSYRRMQREQEVGYAKDFSLDEVNAFIHTL 249 Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF TK Q+ + K+IL D+ M R LQGDVGSGKT+VA I + A +G Q +MAP Sbjct: 250 PFKLTKDQKQSAKEILLDLHNPTIMYRFLQGDVGSGKTIVAAIGLYANYLSGYQGALMAP 309 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA QHY +KK + + + ++TG++ +++ E + G ++IGTHALFQ+S Sbjct: 310 TEVLATQHYSKLKKTFEAYNMNIALLTGSLTLKEKKEIYEGLKSGVIDLVIGTHALFQES 369 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + Y L V+ DEQHRFGV+QR L QK L+M+ATPIPRTL ++ GD+D+S I Sbjct: 370 VHYKNLGFVVTDEQHRFGVKQRKALKQKGEGVDFLVMSATPIPRTLAMSLYGDMDVSSIE 429 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 +P GRKPI T + + +++LK LS+ + Y ICP IE+ ++ +S + + + Sbjct: 430 TRPEGRKPILTKYFEGSSMKPFLKQLKSYLSQDGQCYVICPLIEDNEDLPLKSALTIYEA 489 Query: 510 LHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + +F ++HG + D +K +VM FK+ ++L++TTV+EVG+DV +A++++I N Sbjct: 490 MSSYFKGHYQTGLLHGSLKDEEKNAVMQDFKDNKIQILVSTTVVEVGVDVPNANMMVIYN 549 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627 AE FGL+ +HQLRGR+GRG++ C LL + + RL L+ +DGF I++ DLK Sbjct: 550 AERFGLSSIHQLRGRIGRGDQQGYCFLLSEAQ-DEPAKERLHYLEEHDDGFEISQYDLKT 608 Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R GE+LG KQSG+P F++ ++LE R+ A Sbjct: 609 RGPGELLGDKQSGLPAFMMGDIFKDMNILEETRRYA 644 >gi|302554401|ref|ZP_07306743.1| ATP-dependent DNA helicase RecG [Streptomyces viridochromogenes DSM 40736] gi|302472019|gb|EFL35112.1| ATP-dependent DNA helicase RecG [Streptomyces viridochromogenes DSM 40736] Length = 742 Score = 343 bits (881), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 228/696 (32%), Positives = 366/696 (52%), Gaps = 75/696 (10%) Query: 3 PSFLNPLFAPLSTFRG--VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 P+ PL PL + G K + L ++ G DLL ++P + +R Sbjct: 5 PALEEPLQQPLKSVLGPATAKVMAEHLG-LLTVG--------DLLHHYPRRYEERGQLTH 55 Query: 61 ISEISEERIVTITGYISQ---HSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEML 113 ++++ + VT+ ++ H+ + R ++ + DG+G + L+FF Sbjct: 56 LADLPMDEHVTVVAQVADARLHTFASAKAPRGKGQRLEVTITDGSGRLQLVFFGNGVHKP 115 Query: 114 KNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSL-----PTGLS 167 G + GK+ R+ + HP Y + + D +EA P Sbjct: 116 HKELLPGTRAMFAGKVSVFNRRLQLAHPAYELLRGNPDEPDEAVEAWAGTLIPIYPATAK 175 Query: 168 VDLFKKIIVEAL-SRLPVLPEWIE---KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSP 223 ++ +K I +AL + LP E ++ L Q + + EA IH P D E Sbjct: 176 LESWK--IGKALQTVLPTAQEAVDPLPDSLRQGRGLVPLPEALLKIHRPHTKADIE---D 230 Query: 224 ARERLAYDELLAGQIALLLMRKQFKKEIGIP--INVEGKIAQKILRNIPFSPTKSQESAI 281 AR RL +DE Q+AL R + +P +G ++ R +PF+ T Q+ Sbjct: 231 ARARLKWDEAFVLQVALARRRHAETQLPAVPRRPTPDGLLSAFDAR-LPFTLTDGQQRVS 289 Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341 ++I D++ + M R+LQG+VGSGKT+VAL AM A V+AGGQA ++AP +LAQQH+ I Sbjct: 290 REIFDDLATDHPMHRLLQGEVGSGKTMVALRAMLAVVDAGGQAAMLAPTEVLAQQHHRSI 349 Query: 342 KKYT-------------QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 + Q T+++ ++TG+M A RR AL + G+A I+IGTHAL +D Sbjct: 350 VEMMGELAEGGMLGGAEQATKVV--LLTGSMGAAARRHALLDLTTGEAGIVIGTHALIED 407 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +Q++ L LV+VDEQHRFGV+QR L K PH+L+MTATPIPRT+ +T GD++ S Sbjct: 408 KVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSV 467 Query: 448 ITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS- 502 + + PAGR PI + ++P + ER++ + G +AY +CP+I ++++ ++ Sbjct: 468 LDQLPAGRSPIASHVVPAADKPHFLARAWERVREEVGNGHQAYVVCPRIGDEEDDPKKAG 527 Query: 503 ----------------VVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKL 544 V++ + L + S ++ ++HGRM DK++VM F G + Sbjct: 528 KKKSPEDEAEKRPPLAVLDVADQLSKGPLSGLTVEVLHGRMHPDDKDAVMRRFAAGETGV 587 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQLRGRVGRG C+L+ + + Sbjct: 588 LVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVTEMAEASAA 647 Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 RL + +T DGF ++ DL+QR+EG++LG QSG Sbjct: 648 RQRLGAVASTLDGFELSRIDLEQRREGDVLGQAQSG 683 >gi|221194768|ref|ZP_03567825.1| ATP-dependent DNA helicase RecG [Atopobium rimae ATCC 49626] gi|221185672|gb|EEE18062.1| ATP-dependent DNA helicase RecG [Atopobium rimae ATCC 49626] Length = 720 Score = 343 bits (881), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 232/660 (35%), Positives = 353/660 (53%), Gaps = 34/660 (5%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLN--- 95 +R DLL + P ++D I+ + VTI + + ++ RP ++ Sbjct: 44 SRVSDLLVHIPHRYLDFSSETSIAYTTIGTDVTIRAKVEK---ITVKHPRPRMSIVEVEA 100 Query: 96 -DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQDV- 151 D TG +T +FF + + EG ++ +G + M P + I S+ + Sbjct: 101 VDATGVMTAVFF--RQPWVAQQLHEGDEVAFSGTMTFAYGFHQMKAPFFEVITTESEKMK 158 Query: 152 NFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHN 211 + I V+ G+S ++II AL+ + +W+ L+ + F ++A A +H Sbjct: 159 SHAKILPVHPATEGISPAWMRRIISAALADQGDVLDWLPARLVASRGFMTLARALREVHF 218 Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI--NVEGKIAQKILRNI 269 P AR RLAYDELL Q+ALL R+ F+ E P ++G + +L + Sbjct: 219 P---SSMAAAERARRRLAYDELLCLQMALL-ARRTFECEGDTPFAHTIDGSKKRALLAAL 274 Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T+ Q +A DIL DM+ M R+L GDVG+GKT+VA +A+AA ++G QA +MAP Sbjct: 275 PFELTEEQRTAAHDILHDMAAPEIMNRLLLGDVGTGKTVVAALALAAVADSGTQAAMMAP 334 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+Q+ E I I ++TG+ P A R R+A G +I GT AL + Sbjct: 335 TSVLAKQYAEKIGPLLTAADIPWALVTGSTPAAERTAIENRLATGAISVIFGTSALLSEG 394 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I + +L L+++DEQHRFGV QR L +K + +L MTATPIPRTL L+ GDI +S+I Sbjct: 395 INFRQLTLIVIDEQHRFGVNQRSALRKKGSGVDLLAMTATPIPRTLALSIYGDIALSRIA 454 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSV---VE 505 +P +KT ++ N +D ++ ++ G++AY +CP I+E E +N V V+ Sbjct: 455 HRPLAGAGLKTELLQSNNLDLAYGAVRDAVAAGQQAYVVCPLIDETDEGTNLDDVPPNVQ 514 Query: 506 RFNSLHEHFTS------------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 LH + + I+ GRMS +K+ VM+ F++G +L++TTVIEV Sbjct: 515 TQTKLHSALATYQALQRGVFSDLRLGILTGRMSSAEKDEVMEKFRSGDLDVLVSTTVIEV 574 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613 GIDV +A++++I NA+ FGLA LHQLRGRVGRG L ++ RL+ L+ Sbjct: 575 GIDVPNATVMLIYNADRFGLATLHQLRGRVGRGSLPGKVFLNSDAKRGTSARRRLAALEA 634 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 T DGF +AE DLK R+EGE LG +QSG IA ++E A KDA+ + +DP+L Sbjct: 635 TADGFKLAELDLKLRREGETLGYRQSGNATLKIADLYGDADIIETAYKDARSLYRRDPEL 694 >gi|315303712|ref|ZP_07874226.1| ATP-dependent DNA helicase RecG [Listeria ivanovii FSL F6-596] gi|313627925|gb|EFR96544.1| ATP-dependent DNA helicase RecG [Listeria ivanovii FSL F6-596] Length = 457 Score = 343 bits (881), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 182/441 (41%), Positives = 285/441 (64%), Gaps = 5/441 (1%) Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 +K GI IN + + ++ + ++PF+ TK+Q+ + +I DM M R+LQGDVGSGKT Sbjct: 7 EKSGGISINYDVEDLRQYIDSLPFALTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 66 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +VA IAM AA ++G Q+ +M P ILA+QH + + Q + V ++T ++ R++ Sbjct: 67 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDVTVGLLTSSVKGKRRKEL 126 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 L + +G ++IGTHAL QD + Y++L LVI DEQHRFGV QR L +K P VL MT Sbjct: 127 LAMLENGSVDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRILREKGAYPDVLFMT 186 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL +T+ G++D+S I E PAGRK I+T + +D VI ++ + +G + Y Sbjct: 187 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHEMLDRVIGFMEKEIDKGHQVYI 246 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545 ICP IEE ++ + ++ ++ FN L + + ++HG++ DKE +M F + L Sbjct: 247 ICPLIEESEKLDVQNAIDVFNILQNKWGTKYRPGLMHGKLLPADKEQIMRDFNDKKIDCL 306 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ P ++ Sbjct: 307 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGK 365 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAK 664 R+ ++ T DGF+++E DL+ R G+ G KQSG+P+F +A +HD +LEIAR+DA Sbjct: 366 ERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQDAV 424 Query: 665 HILTQDPDLTSVRGQSIRILL 685 H++ ++ L + + + + LL Sbjct: 425 HMIFEENMLENNQYEKLVALL 445 >gi|145295467|ref|YP_001138288.1| RecG-like helicase [Corynebacterium glutamicum R] gi|140845387|dbj|BAF54386.1| hypothetical protein [Corynebacterium glutamicum R] Length = 707 Score = 343 bits (881), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 218/638 (34%), Positives = 347/638 (54%), Gaps = 56/638 (8%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS-QHSSFQLQKRRPYKILLNDGTGEI 101 +LL +H + I + +E +VTI G ++ S+ + YK+ + T I Sbjct: 33 ELLRHHVRKYSHHGSGVGIGDATEGDLVTIVGQVAFAKQSYTQSGKMLYKVTVLTETERI 92 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI----------------- 144 + FF K + + EG + TGK+K +N + HP +I Sbjct: 93 GISFFGAK--HIPRLLPEGTRALFTGKVKFFRNEPQLSHPEFIVIPDPGSGRRLTATGGM 150 Query: 145 -----FHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQ 195 + + ++V L++ +Y+ ++ + L +PV+ E + + Sbjct: 151 KSLAAYGDVEEVALRLVDREYIPIYAGTATMTTWRIMAAVQRVLETMPVIKEPLS---VV 207 Query: 196 KKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI 255 + PS EA IH+P E S RL Y+E L+ + + R K P+ Sbjct: 208 PEGMPSFDEAIRGIHDP----GHESPSTFINRLKYNEALSLATVMAIRRADTKNRKAPPM 263 Query: 256 NVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 K Q +L + + F T Q+ I++I D+ Q+ M R+LQG+VGSGKT+V+LIAM Sbjct: 264 PRALKGHQHMLIDALNFQLTAGQKQVIREISADIEQRVPMSRLLQGEVGSGKTIVSLIAM 323 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII--TGNMPQAHRRKALERIA 372 A+++G Q ++AP +LA QH + K + + + ++ TG+M +++AL I Sbjct: 324 LQAIDSGRQCAMLAPTEVLATQHARSLSKTLDDAGLDINVVLLTGSMSTGAKKEALLEII 383 Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTAT 429 G A I++GTHAL QD+++++ L LV+VDEQHRFGV+QR +L K PH+L+MTAT Sbjct: 384 SGDADIVVGTHALIQDTVEFFDLGLVVVDEQHRFGVEQRDQLRTKGREGLTPHLLVMTAT 443 Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAY 486 PIPRT+ +T GD+ +S + E P GR+PI+T +IP ++ + ER+ + G++AY Sbjct: 444 PIPRTIAMTVFGDLAVSTLRELPGGRRPIQTSVIPDHKPGWVKRGWERIGEEVLAGRQAY 503 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKL 544 +CP+IE + V+E L E ++ ++HGRM K+SVM F G + Sbjct: 504 VVCPRIEGEG-----GVLEIHAYLSEQVYPGLNVGMLHGRMDTDLKDSVMQEFAQGEIDI 558 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 L+ATTVIEVGIDV +A++++I AE FG++Q+HQLRGRVGRG+ S C+L H ++S Sbjct: 559 LVATTVIEVGIDVANATVMLIREAERFGVSQIHQLRGRVGRGQHDSLCLL--HTTFDEDS 616 Query: 605 --YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 RL+ + T DGF ++E DL+ R+EG++LG +QSG Sbjct: 617 PQGQRLAAISTTTDGFQLSELDLQVRQEGDVLGTRQSG 654 >gi|313904074|ref|ZP_07837454.1| DEAD/DEAH box helicase domain protein [Eubacterium cellulosolvens 6] gi|313471223|gb|EFR66545.1| DEAD/DEAH box helicase domain protein [Eubacterium cellulosolvens 6] Length = 694 Score = 343 bits (880), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 206/561 (36%), Positives = 320/561 (57%), Gaps = 15/561 (2%) Query: 94 LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH-YIFHNSQDVN 152 L D TG + + +F+ L+N G G + R IM HP Y + Sbjct: 87 LQDETGTLQVNWFH--MPFLRNTIKIGVYYVFRGPVIAKGGRKIMEHPQLYTREEYMKLT 144 Query: 153 FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 ++ +Y L GL+ ++ +K + + L E + + +++ I A + IH P Sbjct: 145 GQML-PIYPLTAGLTNNMVRKAVTQLLEMQRTEEEILPDTVREEEGLCEINFARSQIHFP 203 Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPF 271 +++ AR RLA++E + + +R E P+ E + ++ ++P+ Sbjct: 204 ENSENLLI---ARNRLAFEEFFLFLLGVERLRAINDTTENHFPMR-EVWETEDVIASLPY 259 Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331 T +Q++ +I +D++ K M R++QGDVGSGKT++A +AM A E G Q+ +M P Sbjct: 260 KLTGAQQAVWGEIEKDLASKRLMNRLVQGDVGSGKTILAFLAMIMAYENGFQSALMVPTE 319 Query: 332 ILAQQHYE-FIKKYTQN--TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 +LA QHY+ F + +N T + ++ G+ +R+ E+I+ G+ IIGTHAL Q+ Sbjct: 320 VLAVQHYQAFTELLEKNGITDLCPVLLRGSCTAKEKREIYEQISSGKTRAIIGTHALIQE 379 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 ++Y KL LVI DEQHRFGV+QR L K P+VL+M+ATPIPRTL + GD+DIS + Sbjct: 380 KVEYEKLGLVITDEQHRFGVKQREALAGKGYPPNVLVMSATPIPRTLAMILYGDLDISIL 439 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 + PA R PIK ++ + D ++ + G + Y ICP +E +E + +V E Sbjct: 440 NDMPAHRLPIKNCVVNTSYRDTAYRFMRKEVEAGHQVYVICPMVEPNEELSCENVTEYAQ 499 Query: 509 SLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 L F S IA+ +HG+M +K+ +MD+F G K+L++TTVIEVG++V +A++++IE Sbjct: 500 KLKNVFGSEIAVEALHGQMRPKEKQEIMDAFARGEIKILVSTTVIEVGVNVPNATVMMIE 559 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626 NAE FGLAQLHQLRGRVGRG+ S CI + K + RL +L ++ DGF IAEEDLK Sbjct: 560 NAERFGLAQLHQLRGRVGRGDAQSYCIFM-QGDGKKETSERLDILNHSNDGFYIAEEDLK 618 Query: 627 QRKEGEILGIKQSGMPKFLIA 647 R G++ G++QSG+ F IA Sbjct: 619 LRGPGDLFGVRQSGIALFQIA 639 >gi|297559189|ref|YP_003678163.1| DEAD/DEAH box helicase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843637|gb|ADH65657.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 747 Score = 343 bits (880), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 219/642 (34%), Positives = 336/642 (52%), Gaps = 57/642 (8%) Query: 85 QKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHP 141 Q RR ++ + DGTG + L FF R + + GR +G++ K R + HP Sbjct: 89 QGRRRMDMMEATVTDGTGRLHLTFFNRGS-YHQGALVPGRLAMFSGRVSTFKGRRQLDHP 147 Query: 142 HYIF-----HNSQDVNFPLIE--AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLL 194 Y H + E VY GL + + L+ + LP+ + +L Sbjct: 148 QYELLDEDGHEGERARAYAEELIPVYPAVKGLDSTTIARTVDIVLADVDSLPDPLPPELR 207 Query: 195 QKKSFPSIAEAFNIIHNPRKAKDFEWT--SPARERLAYDELLAGQIALLLMRKQFKKEIG 252 +++ +A+A IH P EW+ AR RL +DE Q+AL R + + Sbjct: 208 ERRGLLGVADALRRIHRP-----AEWSDVGAARRRLKWDEAFVLQLALAQRRHRAEDLPA 262 Query: 253 IP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 P G + +PF+ T+ Q + + + + + M +LQGDVG+GKTLVAL Sbjct: 263 KPRPGAVGGLLDAFDAQLPFTLTEGQREVGERLAERLDAAHPMHCLLQGDVGAGKTLVAL 322 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITGNMP 360 AM V++GGQAV++AP +LAQQH+ I V ++TG+M Sbjct: 323 RAMLRVVDSGGQAVMLAPTEVLAQQHHRSISAMLGALGRAGQIDGAENATRVALLTGSMN 382 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 A RR+AL A G A I++GTHAL Q+ + + L LV+VDEQHRFGV+QR L +KA Sbjct: 383 AAARREALLDAASGAAGIVVGTHALLQEHVSFADLGLVVVDEQHRFGVEQRDALREKAVD 442 Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIER 474 PHVL+MTATPIPRT+ +T GD+D+ +T+ P GR P+ T ++P + + ER Sbjct: 443 GRPHVLVMTATPIPRTVAMTVYGDLDVVALTQLPTGRAPVSTHVVPASEKPHFLARAWER 502 Query: 475 LKVVLSEGKKAYWICPQIEE---------------KKESNFR---SVVERFNSLHEHFTS 516 ++ G +A+ +CP+I + ++ + R +V++ L E S Sbjct: 503 IREEAGGGHQAFVVCPRIGDDAKEEAEEEVGAGDGEEAAGARPPLAVLDVAARLREGPLS 562 Query: 517 S--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + ++HGRM+ DK++VM F G +++TTVIEVG+DV +A++++I +A+ FG++ Sbjct: 563 ELRVEVLHGRMAPDDKDAVMRRFSAGDTDAVVSTTVIEVGVDVPNATVMVIMDADRFGVS 622 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG+ C+L+ + RL+ + T DGF ++ DL+ R+EG++L Sbjct: 623 QLHQLRGRVGRGQLPGLCLLVTDAEEGSPARERLAAVAATTDGFELSRVDLEMRREGDVL 682 Query: 635 GIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTS 675 G QSG L L D L+ AR++A + DP LT Sbjct: 683 GDSQSGARSSLRMLTLLKDEELIGEAREEATAYVAADPGLTG 724 >gi|331698532|ref|YP_004334771.1| ATP-dependent DNA helicase RecG [Pseudonocardia dioxanivorans CB1190] gi|326953221|gb|AEA26918.1| ATP-dependent DNA helicase RecG [Pseudonocardia dioxanivorans CB1190] Length = 748 Score = 343 bits (880), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 220/693 (31%), Positives = 365/693 (52%), Gaps = 70/693 (10%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99 DLL ++P ++DR IS + VT+ + + + ++ RR ++ +D G Sbjct: 42 DLLRHYPRRYVDRGKLSDISGLEIGEHVTVVAKVEKATLRDMRSRRGKLLNVVIRDDKGG 101 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEA 158 ++ FF + +V G + +GK+ ++++ + HP + +DV P + + Sbjct: 102 RLSCTFF--NGYKVSHVLTPGVRALFSGKVGVFQSQLQLTHPEFEPLEEGEDVR-PFV-S 157 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 VY L+ + + + L +L + + +D+ +++ P + A IH P D Sbjct: 158 VYPAVDKLNSWDIARCVRQVLDQLDDPTDPLPEDIRRREKLPELGRALRRIHLPETEADH 217 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI--PINVEGKIAQKILRNIPFSPTKS 276 AR RL +DE L Q+AL L R+ + G P G + +PF+ T Sbjct: 218 H---AARARLVWDEALGVQLALALRRRHATERPGTASPPRA-GGLLDAFDARLPFALTDG 273 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q + +I D++++ M R++QGDVG+GKT+VAL AM V++G QA ++AP +LA Q Sbjct: 274 QRAVGTEIAADLARETPMNRLVQGDVGAGKTVVALRAMLQVVDSGRQAAMLAPTEVLAAQ 333 Query: 337 HYEFIKKY-------------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 H ++ + T+I ++TG++ A RR+A+ + G A I++GTH Sbjct: 334 HARSLRSLLGPLGRAGELDGAEEATRIT--LLTGSLGTAARRQAMLDVQSGAAGIVVGTH 391 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGD 442 AL QD + + L LV+VDEQHRFGV+QR L + PH+L+MTATPIPRT+ +T GD Sbjct: 392 ALIQDKVGFADLGLVVVDEQHRFGVEQRDALRGRGERTPHMLVMTATPIPRTVAMTVYGD 451 Query: 443 IDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQI--EEKK 496 +++S +TE P GR PI T ++P ++ V +R++ +++G + Y +CP++ + K Sbjct: 452 LEVSALTELPRGRSPISTTVVPAGEKPAWLERVWQRIREEVADGHQVYVVCPRVGGDPAK 511 Query: 497 ESNFR-------------------------------SVVERFNSLHEHFTSS--IAIIHG 523 + +V+E L E + + I+HG Sbjct: 512 ADDGDLFEGELVDLDDPDPDVGGGAGSDDGARRPPLAVLEVAPKLAEGPLAGLRLGILHG 571 Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583 ++ +K++ M +F+ G +L+ATTVIEVG+DV +++ ++I +A+ FGL+QLHQLRGRV Sbjct: 572 KLPADEKDATMRAFEAGEIDVLVATTVIEVGVDVPNSTGMVILDADRFGLSQLHQLRGRV 631 Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643 GRGE C+L+ P + RL + +T DGF +A DL+ R+EG++LG QSG Sbjct: 632 GRGEAPGVCLLVTDVPAGTTARERLDAIASTTDGFELARLDLELRREGDVLGAVQSGKRS 691 Query: 644 FLIAQPEL-HDSLLEIARKDAKHILTQDPDLTS 675 L L H++++E AR A I+ DPDL Sbjct: 692 TLKLLSLLRHETVIEKARVYATDIVDHDPDLAG 724 >gi|317495415|ref|ZP_07953784.1| ATP-dependent DNA helicase RecG [Gemella moribillum M424] gi|316914474|gb|EFV35951.1| ATP-dependent DNA helicase RecG [Gemella moribillum M424] Length = 669 Score = 343 bits (879), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 240/672 (35%), Positives = 364/672 (54%), Gaps = 32/672 (4%) Query: 5 FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFI-DLLF---YHPSSFIDRHYRPK 60 +N L + T +GVGKKY L+++ E I D+L+ Y SS D K Sbjct: 1 MINILEKSVETIKGVGKKYLQTLNEL-------EIYTIRDVLYNIPYRVSSSTDFSMSVK 53 Query: 61 ISEISEERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118 E++V TG + S Q KR L+ TG I ++FF + LK Sbjct: 54 ----DNEKVVA-TGKVETRVSTQFYGNKRSRSFFSLSTPTGSIKIVFFNQ--HYLKKNLL 106 Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 EGR I V G K N I + + N IE Y L G++ F K++ E+ Sbjct: 107 EGRDIVVKGIYNKANNTITASSISFGKEEKAENN-DKIEVFYHLKQGITQKRFIKLVEES 165 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 + + E + DL+ ++F I + I++ KD E AR+ A+ EL Q+ Sbjct: 166 FNMID--EENVILDLV-PENFKGIWKLEKILYTLHFPKDVEQFDKARKMYAFHELFNYQL 222 Query: 239 ALLLMRKQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 L L + E I + Q+ + +PFS T +Q+ I +I D++ +M R+ Sbjct: 223 KLQLQNINSRLEDERYRICINNNDIQEFTQQLPFSLTNAQKRVIDEIAADLNTPYKMDRL 282 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 LQGDVGSGKT VA + +++G QA IMAP ILA QH+E ++ + I + ++T Sbjct: 283 LQGDVGSGKTAVAAATLYGVIKSGYQAAIMAPTEILANQHFETFFEFFKELNISIALLTS 342 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 N P+ R K L + G+ ++IGTH+L QD + + L VI DEQHRFGV+QR L+ K Sbjct: 343 NTPKKERNKILSLLEVGEVELLIGTHSLIQDDVIFKNLKYVITDEQHRFGVRQRKILSNK 402 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 A + L+MTATPIPR+L +T + DI +S I E P+GRK ++T +V++ + + Sbjct: 403 GEAVNSLMMTATPIPRSLAITLITDIKVSTIDELPSGRKKVQTYKANNKSFYKVLDNIMM 462 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMD 535 L G++ Y +CP IEE ++ + ++V + + + E+ S IAI+HG+MS+ +K+ +++ Sbjct: 463 ELDSGRQGYVVCPLIEESEKMDLQNVEDIYEKIKEYLPDSYKIAILHGKMSNKEKDEIVE 522 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F N +LI+TTVIEVG++V +A+ +I+ +A FGLA LHQLRGRVGR + S CIL+ Sbjct: 523 RFLNKEIHILISTTVIEVGVNVPNATFMIVVDAHRFGLATLHQLRGRVGRSKFQSYCILI 582 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 SK+ + L+N DGF IAE DLK+R G+ G KQSG+P F +A L Sbjct: 583 TD---SKSERIDIMCLEN--DGFKIAEFDLKKRGPGDFFGTKQSGVPSFKVADLINDVDL 637 Query: 656 LEIARKDAKHIL 667 + +A++ A I+ Sbjct: 638 MYLAKRLALKII 649 >gi|237743344|ref|ZP_04573825.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 7_1] gi|229433123|gb|EEO43335.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 7_1] Length = 689 Score = 343 bits (879), Expect = 8e-92, Method: Compositional matrix adjust. Identities = 226/608 (37%), Positives = 347/608 (57%), Gaps = 20/608 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK-RRPYKILLNDGTGEI 101 DL++Y P ++ DR KI E+ V + + + ++ ++ K ++ DGTG + Sbjct: 38 DLIYYFPRAYDDRTNIKKIGELKFNEYVVLKATVMSAVNLTVRSGKKIVKAMVTDGTGIM 97 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVY 160 +L+F +K G + G+ KK +++P Y +F Q V+ I +Y Sbjct: 98 EILWF--GMPYIKKSLKIGEEYLFIGQTKK-SAVFQLINPEYKLFSVQQKVSKNEILPIY 154 Query: 161 SLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 S ++ + +K++ + L L E I +L+++ A IH P K+ E Sbjct: 155 SSNKNITQNSLRKLVEKFLVNFLNYFKENIPDELIKEYKIMERKSAIKNIHYPVSMKEIE 214 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI--AQKILRNIPFSPTKSQ 277 A+ R A +ELL ++ +L R + VEGK + L + F+ T +Q Sbjct: 215 ---EAKRRFAIEELLILELGILKNRFIIENSNSKNYEVEGKKEKVKNFLSQLTFNLTNAQ 271 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + IK+I ++S + R++QGDVGSGKT+VA++ + E G Q +MAP ILA QH Sbjct: 272 KKVIKEIYDEISNGKIVNRLIQGDVGSGKTVVAMVMLIYMAENGYQGALMAPTEILANQH 331 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y IK+ + + VE++T ++ + + LE +A+G I+IGTH+L +D + + KL L Sbjct: 332 YLGIKERLEKIGLRVELLTSSIKGKKKNEILEGMANGDIDIVIGTHSLIEDDVIFKKLGL 391 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +++DEQHRFGV QR KL +K ++L+M+ATPIPR+L L+ GD+D+S I E P GR P Sbjct: 392 IVIDEQHRFGVNQRNKLREKGFLGNLLVMSATPIPRSLALSIYGDLDLSIIDELPPGRTP 451 Query: 458 IKTVIIPINRIDEVIERLKVVL----SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 IKT I DE +E++ + + G +AY++ P IE + +SV + + Sbjct: 452 IKTKWIA---NDEDLEKMYDFIYKKVNAGNQAYFVAPLIETSDKMALKSVDKVSEEIERK 508 Query: 514 FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 F++ I IIHG+M +K+ VM FKN +LIATTVIEVGIDV ++I+ I NAE FG Sbjct: 509 FSNKKIGIIHGKMKAKEKDEVMLKFKNKEYDILIATTVIEVGIDVPASTIMTIYNAERFG 568 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 L+ LHQLRGRVGRG + S C L+ + +++NS RLS+++ TEDGF IAEEDLK R GE Sbjct: 569 LSALHQLRGRVGRGSKQSYCFLISN-SITENSKQRLSIMEETEDGFRIAEEDLKLRNSGE 627 Query: 633 ILGIKQSG 640 I G++QSG Sbjct: 628 IFGLRQSG 635 >gi|251772283|gb|EES52853.1| putative ATP-dependent DNA helicase (RecG) [Leptospirillum ferrodiazotrophum] Length = 711 Score = 342 bits (878), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 223/668 (33%), Positives = 361/668 (54%), Gaps = 50/668 (7%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L APLS+F +G + L + + +DLL+ P + DR R +SE++E Sbjct: 11 LTAPLSSFPSIGPRRQARLER------RGLSTVLDLLYCFPYRYEDRRIRLVVSELTEG- 63 Query: 69 IVTITGYISQHSSFQLQ-----KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123 G+++ S + + K + + D +GEI +++F E L EG + Sbjct: 64 --AEQGFVATVRSIRKKIVPKIKAPIIEATVYDRSGEIPVVWF--GQEYLLKHLPEGSQA 119 Query: 124 TVTGKIKK--------LKNRIIM-VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKI 174 GK++ L++ ++ + P S + I VY GLS +F++I Sbjct: 120 FFFGKVEYSSYSRGLVLRSPVVEPIDPEQGLRRSYHIG--RIVPVYREEAGLSTGVFRRI 177 Query: 175 IVEALSRL-----PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD-----FEWTSPA 224 + + L L LPE + ++ FP+I E +H PR+ + P Sbjct: 178 VGDVLRALWGEAFDPLPESVCREAHLMGWFPAIVE----MHFPRETERPMEELLLPGYPP 233 Query: 225 RERLAYDELLAGQIALLLMRK--QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282 R+R+ ++E + ++L R+ + +P R PF T +Q+ A + Sbjct: 234 RDRIVFEEFFLLEYLMMLRRQGVHHSGRMWVPAEEGHDPVAAFERQAPFPLTGAQQRACR 293 Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342 +I +D +Q + M R L GDVGSGKTLVA AM A+ AG Q +AP ILAQQH + Sbjct: 294 EIARDFAQPHPMNRFLLGDVGSGKTLVAAFAMLQALRAGCQTAFLAPTEILAQQHCRTLA 353 Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402 + + +++ ++ RR+ L IA G+ +I+GTHA+ ++ + + KL LV++DE Sbjct: 354 ALLKEEPPV--LLSQSVKGLDRRRLLSGIAEGRHRVIVGTHAIIEEGVVFEKLGLVVIDE 411 Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462 QH+FGV QR L K P +L+MTATPIPR+L L+ GD++IS + E P GR+P++T I Sbjct: 412 QHKFGVAQRKALWSKGPNPDILVMTATPIPRSLALSYYGDLEISLLDELPPGRQPVETRI 471 Query: 463 IPINRIDEVIERLKV--VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIA 519 +P + DE + KV VL+ ++ + + P +EE ++ + ++ + L F + Sbjct: 472 VP--KADESFWKKKVAPVLARSEQVFVVLPLVEESEKVDAKNAQDVHGYLSSIFPHVRVG 529 Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579 ++ GRM+ +KESVM++F+ G +L+ATTVIEVG+D+ AS++++ENAE FGLAQLHQL Sbjct: 530 LLTGRMAGEEKESVMEAFRTGEISILVATTVIEVGVDIPRASVMVVENAERFGLAQLHQL 589 Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639 RGR+GRG + L+ + + RL +L+ DGF +AEEDL+ R GE +G++QS Sbjct: 590 RGRIGRGGLPGTFYLVPGEGMGDDGRRRLRILEEYSDGFHVAEEDLRMRGPGEFMGVRQS 649 Query: 640 GMPKFLIA 647 G+P F++A Sbjct: 650 GLPMFVVA 657 >gi|119953366|ref|YP_945575.1| ATP-dependent DNA helicase RecG [Borrelia turicatae 91E135] gi|119862137|gb|AAX17905.1| ATP-dependent DNA helicase RecG [Borrelia turicatae 91E135] Length = 689 Score = 342 bits (878), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 231/659 (35%), Positives = 344/659 (52%), Gaps = 36/659 (5%) Query: 5 FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRH---YRPKI 61 FL+ L G+G K I N N T +L+ Y P + DR P Sbjct: 4 FLHEFQYDLQGISGLGNK------GIDRLHNLNITNIKELIEYFPKKYEDRQNIKTFPDP 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI-TLLFFYRKTEMLKNVFFEG 120 E+ ++T+ + +H +F ++ KI+ EI +L F R L+ VF G Sbjct: 58 LEVRSCELMTVF-VVLEHRNFGSNSKKNLKIIAQSENDEIFEILLFNRG--FLEGVFKVG 114 Query: 121 RKITVTGKIKKLKNRIIMVHPHY---IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177 +K + K + ++ +F + + F I VYSL GL+ + E Sbjct: 115 QKFYIYSKFNYSDYTQMWSCSNFDSEVFSYNPE-RFKKIMPVYSLGEGLTSKKISSYVKE 173 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA- 235 AL L I L+ K S S+ +A N IH P E A++ L Y E+ Sbjct: 174 ALIYFLKFGKSDIPDFLINKYSLLSLHDALNEIHFP---TSLEMLDRAKKTLIYREIFLL 230 Query: 236 -----GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290 G+ +L+ +RK E +P+N+ ++ K+ PF TK QE I +I+ D+ Sbjct: 231 QFFSRGKSSLVFLRK----EKHLPMNLLDQVVLKL----PFRLTKDQEVVISEIIDDLKS 282 Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350 M R+LQGDVGSGKTLVA ++ +EAG Q +M P +LA+QHY + ++ I Sbjct: 283 NKPMNRLLQGDVGSGKTLVAFLSSIPLIEAGYQVALMVPTDLLARQHYNNLSNMLKDFNI 342 Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410 + ++TG++ +R LE+I G ++IGTHA+F ++ KL VI+DEQH+FGV+Q Sbjct: 343 SIALLTGSLKTKNRNDVLEKIQSGTYSLVIGTHAIFSQRTKFKKLAYVIIDEQHKFGVEQ 402 Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470 R KL K +LLM+ATPIPR+L LT GD+++S I PAGR+P+ T + D+ Sbjct: 403 REKLKNKGEEVDMLLMSATPIPRSLALTLFGDLEVSLIKRGPAGRRPVTTYLAKHGNEDK 462 Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDID 529 V E L L +G + Y++ P I ++ N + V +L F S+A+IH ++ Sbjct: 463 VYEFLNNELGKGHQVYFVYPLISSSEKFNLKDVTSMCLNLKNIFVEYSVAMIHSKLESHV 522 Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589 KE +M F +L++T+VIEVGID ++A+ I++E+AE FGL+ LHQ+RGRVGRG Sbjct: 523 KEEIMRDFYLKKIDILVSTSVIEVGIDCLNATCIVVEHAERFGLSALHQIRGRVGRGSLK 582 Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648 S LLY PL++ RL +K DGF IAEEDLK R G + G++Q+G K IA Sbjct: 583 SFLFLLYKEPLTEAGKFRLKTIKENIDGFKIAEEDLKLRGPGNLFGLEQTGYLKLKIAD 641 >gi|269837932|ref|YP_003320160.1| ATP-dependent DNA helicase RecG [Sphaerobacter thermophilus DSM 20745] gi|269787195|gb|ACZ39338.1| ATP-dependent DNA helicase RecG [Sphaerobacter thermophilus DSM 20745] Length = 824 Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 230/685 (33%), Positives = 370/685 (54%), Gaps = 37/685 (5%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFID-RHYRPKISE 63 ++ L P++T GVG + + L + R + DLL+ P D P S Sbjct: 138 VSALTDPVTTLPGVGAQRAKQLEAL-------GVRTVEDLLYLTPRRHKDYSRIEPIGSS 190 Query: 64 ISEERIVTITGYISQHSSFQLQKRRPYKIL----LNDGTGEITLLFFYRKTEMLKNVFFE 119 + R TI G + S Q+ R K + + D TG + ++F L Sbjct: 191 LFFNRECTIKGTVV---SIDQQRTRTGKTMVVAEIADDTGSVQAIWF---NPYLARQLHP 244 Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGL---SVDLFKKIIV 176 G I V+G+I++ + +++ +P + +++ ++ + +Y L GL V ++ + Sbjct: 245 GLPIAVSGRIERQRGTLVLRNPEWELLDAEMLHTGRLVPIYPLTRGLYQKQVRTLTRMAL 304 Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 +A + L P + +++ Q+ +A+A +H P D AR RLA+DE L Sbjct: 305 DAAAHLIADP--LPEEIRQRHGLLPLAQALEAVHYPDSEAD---ERAARRRLAFDEFLVL 359 Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 QI L+ + +++ + G ++ ++ +PF+ T +Q A+ +IL DM+ R Sbjct: 360 QIGLVQRKVEWQAQTGHAFRIDEELLATFEDRLPFTLTAAQSRALGEILADMASPRPASR 419 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYT---QNTQIIV 352 +LQGDVGSGKT+VA A AV G QA I+AP ILA+QH F Y + + + Sbjct: 420 LLQGDVGSGKTVVAAAAALVAVADGFQAAILAPTEILAEQHARNFASLYDVLPEERRPRL 479 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 ++TG+ P R + + G I+IGTHA+ ++ +++ +L L ++DEQHRFGV QR Sbjct: 480 ALLTGSTPAGEREEIDAGLRSGTIDILIGTHAILEERVEFARLGLAVIDEQHRFGVVQRA 539 Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 +L K P VL+MTATPIPR+L L GD+D+S I E P GR+ I T I +R + Sbjct: 540 RLRAKGYNPDVLVMTATPIPRSLALVLHGDLDVSIIDELPPGRQKIATHWIEGDRRPDAY 599 Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-SIAIIHGRMSDIDK 530 ++ + G++A+ I P +EE + + R+ + L E F + ++HGRM +K Sbjct: 600 RFIRKEVEAGRQAFIIYPLVEESEAIDARAATAEYERLSTEVFPDLRLGLLHGRMRPAEK 659 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 +++M +F++ +L++T+V+EVGIDV +A++++IE A+ FGLAQLHQ RGRVGRG S Sbjct: 660 DAIMTAFRDHEIDILVSTSVVEVGIDVPNATVMLIEGADRFGLAQLHQFRGRVGRGAARS 719 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 CIL+ +S+ RL+ L T+DGF +AE DL+ R GE G +QSG+P A Sbjct: 720 VCILVAD-DVSEEGQRRLNALVETQDGFRLAEIDLEIRGPGEFFGTRQSGLPDLRFAS-- 776 Query: 651 LHD-SLLEIARKDAKHILTQDPDLT 674 L D L+ AR++A IL+ DP L+ Sbjct: 777 LGDLGTLQRAREEAHRILSADPTLS 801 >gi|329767219|ref|ZP_08258746.1| ATP-dependent DNA helicase RecG [Gemella haemolysans M341] gi|328836886|gb|EGF86533.1| ATP-dependent DNA helicase RecG [Gemella haemolysans M341] Length = 669 Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 226/669 (33%), Positives = 362/669 (54%), Gaps = 28/669 (4%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 +N L + T +GVGKKY L+++ E I + Y+ + S Sbjct: 2 INILEKSVGTIKGVGKKYLQALNEL-------EIYTIRDILYNIPYRVSSSTDFSSSVKD 54 Query: 66 EERIVTITGYISQHSSFQLQKRRPYK--ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123 E+++T TG + S Q R + L+ +G I ++FF + LK EGR + Sbjct: 55 NEKVIT-TGKVETRVSTQFYGNRRSRSFFTLSTSSGSIKIVFFNQ--HYLKKNLVEGRDV 111 Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183 V G N I + + IE Y L G++ F K++ E+ + Sbjct: 112 VVKGTYNAANNTITASSVSFNIM-EEKTKGDTIEVFYHLKQGITQKKFIKLVEESFKMID 170 Query: 184 VLPEWIEKDLLQK--KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 E + DL+ + K + +H P+ +++F+ AR+ A+ EL Q+ L Sbjct: 171 --GENVILDLVPENFKGIWKLERILYTLHYPKNSEEFD---KARKMFAFHELFNYQLKLQ 225 Query: 242 LMRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L + ++ + V K + ++PF+ T +Q I +I+ D+++ +M R+LQG Sbjct: 226 LQNINSRIEDTRYSVGVNNKDIKVFKDSLPFTLTGAQSRVIDEIVTDLNEPYKMDRLLQG 285 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT VA + A ++AG Q IMAP ILA QH+E ++ ++ I V ++T + P Sbjct: 286 DVGSGKTAVAAATLYATIKAGYQTAIMAPTEILANQHFETFFEFFKDLNISVALLTSSTP 345 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 + R L + G+ ++IGTH+L Q+ +++ L VI DEQHRFGV+QR L+ K A Sbjct: 346 KKERNTILSLLEVGEIELLIGTHSLIQEDVKFNNLKYVITDEQHRFGVRQRQLLSNKGEA 405 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 + L+MTATPIPR+L +T + DI +S I E PAGRK ++T +V++ +++ L Sbjct: 406 VNSLMMTATPIPRSLAITLITDIKVSTIDELPAGRKKVQTYKANNKSFYKVLDNIRMELD 465 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFK 538 G++ Y +CP IEE ++ + +++ E + ++ + IAI+HG+MS+ +K+++++ F Sbjct: 466 NGRQGYVVCPLIEESEKIDLQNIEETYENIKNYLPDDYKIAILHGKMSNKEKDAIVEKFL 525 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 +LI+TTVIEVG++V +A+ +II +A FGLA LHQLRGRVGR + S CIL+ Sbjct: 526 AKEIHILISTTVIEVGVNVPNATFMIIVDAHRFGLATLHQLRGRVGRSKYQSYCILVTD- 584 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 SK+ + L+N DGF IAE DLKQR G+ G KQSG+P F +A L+ + Sbjct: 585 --SKSERIDIMCLEN--DGFKIAEFDLKQRGPGDFFGTKQSGVPSFKVADLINDVDLMYL 640 Query: 659 ARKDAKHIL 667 A+K A I+ Sbjct: 641 AKKLAVKII 649 >gi|118617568|ref|YP_905900.1| ATP-dependent DNA helicase RecG [Mycobacterium ulcerans Agy99] gi|118569678|gb|ABL04429.1| ATP-dependent DNA helicase RecG [Mycobacterium ulcerans Agy99] Length = 743 Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 216/660 (32%), Positives = 352/660 (53%), Gaps = 69/660 (10%) Query: 43 DLLFYHPSSFID----RHYRPKISEISEERIVTITGYISQHSSFQLQK---RRPYKILLN 95 DLL ++P S+++ R + E+ E +TI I++ SF ++K R +I L Sbjct: 31 DLLRHYPRSYVEGGERRGTDDEQPEVGEH--ITIVDVITETKSFPMKKTPRRLCLRITLG 88 Query: 96 DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF-- 153 G ++T FF + +K + ++ ++G++ K + + HP ++ +S D Sbjct: 89 SGRNKVTATFF--NADYIKKGLTKNTRVMLSGEVGYFKGVMQLTHPAFLILDSPDGQHHG 146 Query: 154 -----PLIEAVYSLPTGLSVDLFK-------------------KIIVEALSRLPVLPEWI 189 + +A ++ L+++ F+ K + + L + E + Sbjct: 147 TKSLKSIADASQAISGELAMEEFERRFFPIYPASTKVQSWDIFKCVRQVLEVFDPVDEPL 206 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249 L + S +A IH A+D AR RL +DE + Q AL+ R Sbjct: 207 PAALRAEHGLISEDDALRAIH---LAEDESEREQARRRLTFDEAVGLQWALVARRHGELS 263 Query: 250 EIGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 E G P +A ++L +PF PT Q + ++ ++ M R+LQG+VGSGKT+ Sbjct: 264 ESGPPAPARSDGLAAELLARLPFEPTAGQREVLDELSDGLAATRPMNRLLQGEVGSGKTI 323 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITG 357 VA++AM V+AG Q ++AP +LA QH I + V ++TG Sbjct: 324 VAVLAMLQMVDAGYQCALLAPTEVLAAQHLLSINDVLGPLAMGGQLGGADNATRVALLTG 383 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 +M +++ IA GQ I+IGTHAL QD+++++ L +V+VDEQHRFGV+QR +L K Sbjct: 384 SMTAGQKKQVRAEIASGQVGIVIGTHALLQDAVEFHNLGMVVVDEQHRFGVEQRDQLRAK 443 Query: 418 ATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDE 470 A A PH+L+MTATPIPRT+ LT GD++ S + E P GR+PI T +I + D Sbjct: 444 APAGITPHLLVMTATPIPRTVALTVYGDLETSTLRELPRGRQPITTNVIFVKDKPAWFDR 503 Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS----LHEHFTSS------IAI 520 +R+ ++ G++AY + P+I+E ES+ R ++ L+ ++ +A+ Sbjct: 504 AWQRIVEEVAAGRQAYVVAPRIDESDESDKAENGARPSATAVGLYSRLQAAELAGLRLAL 563 Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580 +HGR+S +KE+ M +F+ G +L+ TTVIEVG+DV +A+++++ +A+ FG++QLHQLR Sbjct: 564 MHGRLSADEKEAAMAAFRAGNVDVLVCTTVIEVGVDVPNATVMLVMDADRFGISQLHQLR 623 Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 GR+GRGE S C+L + RL + T DGF +AE DLK+R+EG++LG QSG Sbjct: 624 GRIGRGEHPSLCLLASWVSPGSPAGRRLRAVAETMDGFDLAELDLKERREGDVLGRNQSG 683 >gi|189219366|ref|YP_001940007.1| RecG-like helicase [Methylacidiphilum infernorum V4] gi|189186224|gb|ACD83409.1| RecG-like helicase [Methylacidiphilum infernorum V4] Length = 694 Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 225/687 (32%), Positives = 359/687 (52%), Gaps = 42/687 (6%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L+ VG++ + L K+ + LLFY P + DR + +S +++ + Sbjct: 6 LAKLEYVGQRRAFLLEKL------GISSLKTLLFYLPFRYEDRRLQKPLSLAADDEKILF 59 Query: 73 TGYISQHSSFQLQKRRPYKILL---NDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + + +L+ R KI+L +D ++ ++F++ +L GRK+ V G + Sbjct: 60 KATVVEVKKERLKARNIIKIVLLSLDDHREKLVGIWFWK---VLPEYLSVGRKVAVYGTV 116 Query: 130 KKLKNRIIMVHPHYIFHNSQ-----DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184 +K K + M P + ++ I +YS +GLS + ++II L ++P+ Sbjct: 117 RKFKGKWTMWQPEIECFEEEIQLQASLHISRIVPIYSTTSGLSQKILRQIIYSQLLKIPI 176 Query: 185 L---PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 P + D P++ A IH P E P ++R+AY E Q+ + Sbjct: 177 ESPDPYPMPAD----TPLPTLGFALRKIHFP---DTLEQIQPCKDRIAYHEFFIEQLRMA 229 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +K+ + + + L ++PF+PT +Q+ A+++I +D+ + M R+L GD Sbjct: 230 YRKKKRAEIKKRRPSRRFSLCPGFLSSLPFNPTSAQKKAMEEIDRDLESASPMNRLLLGD 289 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKTLVA+ A VE G + M+P G LA QHY +KK+ + + + I ++ Q Sbjct: 290 VGSGKTLVAVYAAIKTVERGQNVLFMSPTGALASQHYLTLKKWLSSLAVPLFYIGRDVGQ 349 Query: 362 A-------------HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408 H + + +GTHAL S L LVI+DEQH+FGV Sbjct: 350 KEEFLPTDNENVFFHEHPSDLSPGSLPGKVFVGTHALLFRSFNPDSLGLVIIDEQHKFGV 409 Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468 +QR L +KA P +L MTATPIPRTL L+ GD+D S + P R I T I + Sbjct: 410 EQRAALAKKALYPDILTMTATPIPRTLALSLYGDLDFSILDVPPINRGKIITAIRSSESL 469 Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSD 527 ++ E +K +L +G +AY + P I E + + S+ + + L + F + ++HG M Sbjct: 470 PKIWEFMKRLLRQGTQAYVVFPTIHESNDPDLPSLEKGYEELKKIFKEFRLGMVHGEMPP 529 Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587 +++E V +SF+ +LL AT++IEVGID+ +A I+++ A FGLAQLHQ+RGRVGRG Sbjct: 530 LEREVVFESFRKNEIRLLAATSIIEVGIDIPNARIMVVFGAHRFGLAQLHQIRGRVGRGP 589 Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 +S CILL S+ S RL +L+ ++DGF IA+ED+K R GE G +QSG ++ A Sbjct: 590 GVSYCILLADKQ-SQESRKRLKILELSKDGFEIAKEDMKLRGLGEFFGSQQSGKHTYITA 648 Query: 648 QPELHDSLLEIARKDAKHILTQDPDLT 674 P +SLL AR+ A IL++DPDL+ Sbjct: 649 DPIAQESLLLKAREQALKILSEDPDLS 675 >gi|300172900|ref|YP_003772065.1| ATP-dependent DNA helicase RecG [Leuconostoc gasicomitatum LMG 18811] gi|299887278|emb|CBL91246.1| ATP-dependent DNA helicase RecG [Leuconostoc gasicomitatum LMG 18811] Length = 676 Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 184/445 (41%), Positives = 278/445 (62%), Gaps = 8/445 (1%) Query: 230 YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289 ++E Q+ L L++ + G IN + + + ++PF T +Q I +ILQD Sbjct: 208 FEEFFVFQMRLQLLKLADQNFAGEGINYDERAIRNFETSLPFKLTAAQTKVISEILQDQK 267 Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT- 348 + M R+LQGDVGSGKT+VA +AM A V AG QA IMAP ILAQQH + + N Sbjct: 268 RPRHMNRLLQGDVGSGKTVVAAMAMYAVVTAGMQAAIMAPTEILAQQHALSLTQLFDNAG 327 Query: 349 -QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407 + VE++T + A RR LE + +G I++GTHAL Q + ++ L L ++DEQHRFG Sbjct: 328 LSLRVELLTSGLKVAARRHLLEDLENGDIDILVGTHALLQPDVAFHHLGLAVIDEQHRFG 387 Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467 V QR L + P +L MTATPIPRTL +T+ G++D+S I + P GRK IKT + N+ Sbjct: 388 VNQRAALRENGVNPDILAMTATPIPRTLSITAYGEMDVSIIDQLPNGRKVIKTTRMGHNQ 447 Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526 +D I +K + G +AY + P IEE + + ++ + ++ F + ++HGR+S Sbjct: 448 LDNAIAFVKKQIDVGAQAYIVTPLIEESESLDVQNATAMYEAMQLEFPQYQVGLLHGRLS 507 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 + +K+++M FK ++L+ATTVIEVG+DV +A++++I +A+ FGLAQLHQLRGRVGRG Sbjct: 508 NDEKKTLMADFKANRIQILVATTVIEVGVDVPNATVMLILDADRFGLAQLHQLRGRVGRG 567 Query: 587 EEISSCILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644 S IL+ P K Y RL + T DGF++A+ DL+ R G+ILG KQSG+P+F Sbjct: 568 SRQSYTILVADP---KTDYGTARLDAMVETTDGFILAQRDLELRGSGDILGTKQSGVPEF 624 Query: 645 LIAQPELHDSLLEIARKDAKHILTQ 669 ++ P +++EIA+++A +++Q Sbjct: 625 VVGDPIKDLTMMEIAQQEAITLVSQ 649 >gi|300783675|ref|YP_003763966.1| ATP-dependent DNA helicase RecG [Amycolatopsis mediterranei U32] gi|299793189|gb|ADJ43564.1| ATP-dependent DNA helicase RecG [Amycolatopsis mediterranei U32] Length = 717 Score = 342 bits (876), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 220/678 (32%), Positives = 362/678 (53%), Gaps = 53/678 (7%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY--KILLNDGTGE 100 DLL ++P + +R I+ + T+ I + S +++ R +++ DG Sbjct: 31 DLLRHYPRRYAERGELTDIAGLELGEHATVLARIEKVSKRRMKARNGTIIDMVITDGKRR 90 Query: 101 ITLLFF---YRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV-----N 152 +T FF +R+ +++ G+ GK+ ++ + + +P Y ++++ N Sbjct: 91 LTCAFFNQAWREKDLVP-----GKTGLFAGKVSAFRDTLQLTNPEYELFDAENEAEAMDN 145 Query: 153 F-PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHN 211 F I VY G+ K + + L L V + + +L + + A IH Sbjct: 146 FLAAIIPVYPAAQGMPTWSIAKCVRQVLDVLEVDDDPMPAELRRLHKLSDLDNALRGIHR 205 Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI----NVEGKIAQKILR 267 P E +++RL +DE +A Q L+ ++ I P +V G + + + Sbjct: 206 PENWAHLE---ASKKRLKWDEAMAVQ---LIFAQRRHSAISRPAKANPHVSGGLMEAFDK 259 Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 +PF T Q +I D++ ++ M R+LQG+VGSGKT+VAL AM V+ G QA ++ Sbjct: 260 RLPFDLTAGQRGIGDEIAADLASEHPMNRLLQGEVGSGKTVVALRAMLQVVDNGRQAAML 319 Query: 328 APIGILAQQHYEFIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376 AP +LA QH +++ V ++TG+M R+KAL I G+A Sbjct: 320 APTEVLAAQHARSLREMLGDLGQAGELGAAENATRVTLLTGSMGAKERKKALLEIVSGEA 379 Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA---TAPHVLLMTATPIPR 433 I++GTHAL QD +++ L L +VDEQHRFGV+QR L + T+PHVL+MTATPIPR Sbjct: 380 GIVVGTHALIQDHVEFADLGLAVVDEQHRFGVEQRDALRTRGAGDTSPHVLVMTATPIPR 439 Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWIC 489 T+ +T GD+++S + E P GR PI T ++P+ + + +R++ + +G +AY +C Sbjct: 440 TVAMTVYGDLEVSALREMPVGRSPIATTVVPVAEKPAWFERIWQRVREEVGKGHQAYVVC 499 Query: 490 PQIEEKKESNFR------SVVERFNSL-HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541 P+I ++ S+ +V+E L H I ++HGRM K++VM +F G Sbjct: 500 PRIGDEPPSDKSDKRPPLAVLEVAPELAHGPLQGLKIDVLHGRMPPDGKDAVMRAFSAGE 559 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQLRGRVGRG C+L+ Sbjct: 560 LDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSVPGLCLLVTETLDG 619 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660 + RL+ +++T DGF ++ DL+ R+EG+ILG QSG L L D ++ +R Sbjct: 620 TATRERLAAVESTTDGFELSRLDLELRREGDILGAAQSGKRSTLKLLSLLRDEDVIAASR 679 Query: 661 KDAKHILTQDPDLTSVRG 678 A+ ++TQDP+LT RG Sbjct: 680 ALAQELVTQDPELTKYRG 697 >gi|170017653|ref|YP_001728572.1| ATP-dependent DNA helicase RecG [Leuconostoc citreum KM20] gi|169804510|gb|ACA83128.1| ATP-dependent DNA helicase RecG [Leuconostoc citreum KM20] Length = 676 Score = 342 bits (876), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 221/635 (34%), Positives = 347/635 (54%), Gaps = 27/635 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ---HSSFQLQKRRPYKILLNDGTG 99 DL+ Y P + D R SE + VT G +S + F + + + +L+ Sbjct: 32 DLVTYFPFRYEDLGERVP-SETLDGDKVTFKGIVSTPAVMTRFGKKTQTRFGLLIAHENI 90 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159 +T F+ + + +N+ G +I V G K + + + + S D ++ + Sbjct: 91 RVT---FFNQPWITQNIIV-GEEIAVYGTYNAAKAAMTGIK---MINASVDG----LDPI 139 Query: 160 YSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 Y ++ + +I A S + +P + + + QK +H P D Sbjct: 140 YPATKQIAAKTIRHLIEIAWSEVRGTIPTLVPETIRQKYRLLDRNTQIENMHFP---VDM 196 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 R A++E Q+ L L++ + G I+ + + +PF T +Q+ Sbjct: 197 AAAKAGRRSAAFEEFFIFQMRLQLLKLADQNFAGESIDYDETALVNFEQALPFELTAAQQ 256 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 I++ILQD + M R+LQGDVGSGKT+VA + M AAV AG QA IMAP ILAQQH Sbjct: 257 KVIQEILQDQKRPRHMNRLLQGDVGSGKTVVAAMTMYAAVTAGCQAAIMAPTEILAQQHA 316 Query: 339 EFIKKYTQNT--QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 + + N + VE++T + A RR LE + +G I++GTHAL Q + ++ L Sbjct: 317 MNLAQLFDNAGVNVRVELLTSGLKVAARRHLLEDLENGTIDILVGTHALLQPDVAFHHLG 376 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 L ++DEQHRFGV QR KL + P +L MTATPIPRTL +T+ G++DIS I + P+GRK Sbjct: 377 LAVIDEQHRFGVNQRAKLRENGVNPDILAMTATPIPRTLSITAYGEMDISVIDQLPSGRK 436 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 I+T + N++D ++ +K + G +AY + P IEE + + ++ + ++ Sbjct: 437 TIQTKRLRHNQLDTALDFVKQQIDLGAQAYIVTPLIEESESLDVQNATAMYEAMQLELPQ 496 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 I ++HGR+S+ +K+ +M+ FK ++L+ATTVIEVG+DV +AS+++I +A+ FGLAQ Sbjct: 497 YQIGLLHGRLSNDEKKQLMEDFKANRIQILVATTVIEVGVDVPNASVMLILDADRFGLAQ 556 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEI 633 LHQLRGRVGRG+ S IL+ P K Y RL + T DGF++A+ DL R G+I Sbjct: 557 LHQLRGRVGRGKRQSYTILVADP---KTDYGTARLDAMVETTDGFVLAQRDLDLRGAGDI 613 Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668 LG KQSG+P+F + P +LEIA+++A I++ Sbjct: 614 LGTKQSGVPEFNVGDPVKDLRMLEIAQQEAIAIVS 648 >gi|260904759|ref|ZP_05913081.1| ATP-dependent DNA helicase RecG [Brevibacterium linens BL2] Length = 715 Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 228/705 (32%), Positives = 364/705 (51%), Gaps = 57/705 (8%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY--KILLND 96 T DL + P F+ + + + + + + ++QKRR ++++D Sbjct: 23 TSVADLFRFFPRRFLVPGEKTPLGGLPLGETAILQAEVISVDTRRMQKRRGTITDVIVHD 82 Query: 97 GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS-------Q 149 G + + FF ++ L + G + GK+++ + ++ + P ++ + + Sbjct: 83 GQQSMKIAFFNQR--WLDSQLVPGLTVVFAGKVEEYRGQLTLNSPTWLNRDEHDEKWTPE 140 Query: 150 DVNFPLIEAVYSLPTGLS-VDLFKKIIVEALSRLP-----VLPEWIEKDLLQKKSFPSIA 203 D+N P VYS G++ L+K I V P LP + ++L P + Sbjct: 141 DLNSPF--PVYSRVKGIAQTRLWKAIKVLLDVAGPDEFEDPLPTAMRENL----DLPDLR 194 Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQ 263 A N +H PR A T A++R ++E LA Q + + ++K P+ G ++ Sbjct: 195 TALNDMHRPRSAAA---TEKAKQRWKWEEALALQAEFVSRKADYEKLEATPLLNVGARSE 251 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 + ++PF T SQ ++I DM +K M R+L GDVGSGKT+VAL AM AV++G Q Sbjct: 252 RFDNSLPFYLTASQLRVGEEIEADMGRKTAMHRLLHGDVGSGKTVVALRAMLTAVDSGAQ 311 Query: 324 AVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIA 372 A ++AP +LA QH+ I+ + + Q+ V ++TG+MP R++ +A Sbjct: 312 AAMLAPTEVLATQHFRSIETLLGDQMALSPLLSSDDQVRVALLTGSMPARERKQLALDLA 371 Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA--TAPHVLLMTATP 430 GQ I++GTHAL D+ + L L++VDEQHRFGV+QR L KA PH L+M+ATP Sbjct: 372 TGQIDIVVGTHALMSDTTMFDTLGLIVVDEQHRFGVEQREALRAKAGLKVPHTLVMSATP 431 Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEGKKAY 486 IPRT+ +T D+D+S + E PAG K I T + + N + V++ + G+ + Sbjct: 432 IPRTVAMTVFADLDVSTLDEMPAGTKDITTHAVSLGDHPNWLGRVLQLIDEAAENGRGTF 491 Query: 487 WICPQIE----EKKESN----FRSVVERFNSL----HEHFTSSIAIIHGRMSDIDKESVM 534 + P+IE E E+ R +E E + S A++HGRMS +K+ M Sbjct: 492 VVFPRIEPSDIEDPETGDVIGARKGIEDLKDFLQNSDELRSRSTALLHGRMSPAEKDRTM 551 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 +F +G +L++TTV+EVG+DV A++++I AE FG+AQLHQLRGRVGR + C L Sbjct: 552 AAFVSGETDILVSTTVVEVGVDVPRATMMVIFEAERFGVAQLHQLRGRVGRDGSAAMCFL 611 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 L P S+ RLS + T DGF +AE DL R EG++LG Q G Sbjct: 612 LTDMPEVDESFERLSEVAGTLDGFALAEYDLGTRGEGDVLGSSQWGGSSLKHLSILRDAP 671 Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699 ++E AR A+ I++ DPDL+++ ++R + E+ FI A Sbjct: 672 IVEEARTIAEKIISVDPDLSAL--PALRAFISRVLPAESAHFIEA 714 >gi|315925837|ref|ZP_07922044.1| DNA helicase RecG [Pseudoramibacter alactolyticus ATCC 23263] gi|315620946|gb|EFV00920.1| DNA helicase RecG [Pseudoramibacter alactolyticus ATCC 23263] Length = 679 Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 207/611 (33%), Positives = 329/611 (53%), Gaps = 26/611 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRR----PYKILLNDG- 97 DLL + P +IDR R + SE VTI +S+ + + +R + +DG Sbjct: 31 DLLAHFPKQYIDRSRRGTFAAPSET-AVTIEACVSRKGTVRRIRRNLSLFGLSVTTDDGV 89 Query: 98 TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157 TG+IT FF + L F E + G+I + K + M +P ++ + NF + Sbjct: 90 TGQIT--FFNQP--WLAEHFHEEARYYFFGRITEKKGKCGMANPQFV-PTDKPGNFFELT 144 Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 VY+ G+S + +K+I + L+ + + + + L + + P+ A ++H P+ + Sbjct: 145 PVYAPVGGVSGETLRKLIAKVLAEDIAMSDPLPETLRKDRCLPNSAACLKLLHCPQTMAE 204 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKE---IGIPINVEGKIAQKILRNIPFSPT 274 + R RL ++E L + LL R + ++ + P ++ + R +PF T Sbjct: 205 ---VAAGRTRLKFEEALKLNLGLLRSRGETRRSSVVLAHPASL-----SRFERGLPFLLT 256 Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334 + Q + +I D+ M R++QGDVGSGKT+VA+ G Q MAP ILA Sbjct: 257 EGQRRVLAEIAADLQSGRIMNRLVQGDVGSGKTVVAVACAYLMALGGYQCAYMAPTEILA 316 Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394 +QH + Y I V ++TG+M + R AL IA+G A +IIGTHALFQ + YY Sbjct: 317 EQHARNFEAYLAPYGISVTLVTGSMKASERENALTHIANGDAQVIIGTHALFQKDMAYYN 376 Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454 L +VI DEQHRFGV+QR L K PH L+M+ATPIPRTL L GD+DIS I PAG Sbjct: 377 LGMVITDEQHRFGVRQRGLLALKGERPHTLVMSATPIPRTLALVLYGDLDISVIDTMPAG 436 Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEH 513 RK +KT + +++ + V ++ G + + +CP +E +E + R + + Sbjct: 437 RKKVKTYFYTEKALRKILGMMAVEMAAGHQGFIVCPFVENAEEMAEVRDTQTVCREVDRY 496 Query: 514 FTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 + +A +HG+M +K +V+ F G L+AT++IEVGIDV + +++++ +A+ F Sbjct: 497 YKGLYRVACLHGKMKPDEKAAVVVDFSAGKIDCLVATSIIEVGIDVPNVTMMVVMSADRF 556 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631 GL+QLHQLRGRVGRG+ + C L+ + +++ + R+ V+ N +G IAE D K R G Sbjct: 557 GLSQLHQLRGRVGRGDAQAYCFLVSN-AVNEKTIARMKVIVNHHNGQEIAEADFKLRGPG 615 Query: 632 EILGIKQSGMP 642 + G +Q G+P Sbjct: 616 DAFGTRQHGLP 626 >gi|241889944|ref|ZP_04777242.1| ATP-dependent DNA helicase RecG [Gemella haemolysans ATCC 10379] gi|241863566|gb|EER67950.1| ATP-dependent DNA helicase RecG [Gemella haemolysans ATCC 10379] Length = 669 Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 222/669 (33%), Positives = 362/669 (54%), Gaps = 28/669 (4%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 +N L + T +GVGKKY L+++ E I + Y+ + S Sbjct: 2 INILEKSVGTIKGVGKKYLQTLNEL-------EIYTIRDILYNIPYRVSSSTDFSSSVKD 54 Query: 66 EERIVTITGYISQHSSFQLQKRRPYK--ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123 E+++T TG + S Q R + L+ +G I ++FF + LK EG+ + Sbjct: 55 NEKVIT-TGKVETRVSTQFYGNRRSRSFFTLSTSSGSIKIVFFNQ--HYLKKNLIEGKDV 111 Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183 V G N I + + + IE Y L G++ F K++ E+ + + Sbjct: 112 VVKGTYNAANNTITASSVSFNVVDEKPKG-DTIEVFYHLKQGITQKKFTKLVEESFNMID 170 Query: 184 VLPEWIEKDLLQK--KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 E + DL+ + K + + +H P+ +++F+ A++ A+ EL Q+ L Sbjct: 171 --GENVILDLVPENFKGIWKLDKILYTLHYPKNSEEFD---KAKKMFAFHELFNYQLKLQ 225 Query: 242 LMRKQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L + E + + K + ++PF T +Q I +I+ D++ +M R+LQG Sbjct: 226 LQNINSRIENNRYCVGINNKDINEFKNSLPFMLTGAQSRVIDEIVDDLNNPYKMDRLLQG 285 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT VA + A ++AG Q IMAP ILA QH+E ++ ++ I V ++T + P Sbjct: 286 DVGSGKTAVAAATLYATIKAGYQTAIMAPTEILANQHFETFFEFFKDLNISVALLTSSTP 345 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 + R L + G+ ++IGTH+L Q+ +++ L VI DEQHRFGV+QR L+ K A Sbjct: 346 KKDRNTILSLLEVGEIELLIGTHSLIQEDVKFNNLKYVITDEQHRFGVKQRQLLSNKGEA 405 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 + L+MTATPIPR+L +T + DI +S I E PAGRK ++T +V++ +++ L Sbjct: 406 VNSLMMTATPIPRSLAITLITDIKVSTIDELPAGRKKVQTYKATNKSFYKVLDNIRMELD 465 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFK 538 G++ Y +CP IEE ++ + ++V E + ++ + IAI+HG+M++ +K+++++ F Sbjct: 466 NGRQGYVVCPLIEESEKMDLQNVEETYENIKNYLPDDYKIAILHGKMNNKEKDAIVEKFL 525 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 N +LI+TTVIEVG++V +A+ +II +A FGLA LHQLRGRVGR + S CIL Sbjct: 526 NKEIHILISTTVIEVGVNVPNATFMIIVDAHRFGLATLHQLRGRVGRSKFQSYCIL---- 581 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 ++ + R+ ++ DGF IAE DLKQR G+ G KQSG+P F +A L+ + Sbjct: 582 -VTDSKSERIDIMCLENDGFKIAEFDLKQRGPGDFFGTKQSGVPSFKVADLINDVDLMYL 640 Query: 659 ARKDAKHIL 667 A+K A I+ Sbjct: 641 AKKLAVKII 649 >gi|126654454|ref|ZP_01726189.1| ATP-dependent DNA helicase RecG [Bacillus sp. B14905] gi|126589088|gb|EAZ83297.1| ATP-dependent DNA helicase RecG [Bacillus sp. B14905] Length = 405 Score = 341 bits (875), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 180/380 (47%), Positives = 252/380 (66%), Gaps = 5/380 (1%) Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R+LQGDVGSGKT+VA I + AAV AG Q +MAP ILA+QH E + ++ Q + V Sbjct: 1 MNRLLQGDVGSGKTVVAAIGLYAAVSAGYQGALMAPTEILAEQHLENLLEWFQPFGVRVA 60 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 +++G+ RR L +A+G+ I+IGTHAL Q + + L VI DEQHRFGV+QR Sbjct: 61 LLSGSTKTKERRVILADLANGELDIVIGTHALIQPDVIFKNLGFVITDEQHRFGVEQRRI 120 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 L K P VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T + + VI Sbjct: 121 LRDKGENPDVLFMTATPIPRTLAITAFGEMDVSMIDEMPAGRKQIETHWMKKEQFGSVIS 180 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKE 531 +L+ L+ G++AY ICP IEE + + ++ VE + L +FT + ++HGR+S +K+ Sbjct: 181 KLEGELAAGRQAYAICPLIEESDKLDVQNAVEIYEQLATYFTGRYQVGLMHGRLSADEKD 240 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 +VM +F +G+ ++L++TTV+EVG++V +A+ +I+ +AE FGLAQLHQLRGRVGRGE S Sbjct: 241 AVMRAFSDGSIQVLVSTTVVEVGVNVPNATFMIVYDAERFGLAQLHQLRGRVGRGEHQSY 300 Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 CILL P S R+ + T DGF +AE+DL+ R G+ G KQSG+P F +A + Sbjct: 301 CILLADPK-SDEGKERMQSMTETNDGFRLAEKDLELRGPGDFFGRKQSGLPDFKVADL-V 358 Query: 652 HD-SLLEIARKDAKHILTQD 670 HD +LE ARKDA +L D Sbjct: 359 HDYRILETARKDATTMLETD 378 >gi|302558168|ref|ZP_07310510.1| ATP-dependent DNA helicase RecG [Streptomyces griseoflavus Tu4000] gi|302475786|gb|EFL38879.1| ATP-dependent DNA helicase RecG [Streptomyces griseoflavus Tu4000] Length = 740 Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 227/722 (31%), Positives = 364/722 (50%), Gaps = 84/722 (11%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ---HSSFQLQKRRP----YKILLN 95 DLL ++P + +R ++++ + VT+ ++ H+ + R ++ + Sbjct: 39 DLLHHYPRRYEERGQLTHLADLPMDEHVTVVAQVADARLHTFASAKAPRGKGQRLEVTIT 98 Query: 96 DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVN-- 152 DG+G + L+FF G + GK+ R+ + HP Y + + + Sbjct: 99 DGSGRLQLVFFGAGVHKPHKELLPGTRAMFAGKVSVFNRRVQLAHPAYELLRDDAEETVE 158 Query: 153 ---------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203 +P + S G ++ EA+ LP L + + Sbjct: 159 TWAGALIPIYPATAKLESWKIGKALQTVLPSAQEAVDPLP-------DSLRAGRGLVGLP 211 Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR---------KQFKKEIGIP 254 EA IH P D E AR RL +DE Q+AL R + K G+ Sbjct: 212 EALLKIHRPHTKADVE---DARARLKWDEAFVLQVALARRRHADAQLPAVARRPKPDGLL 268 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 +G++ PF+ T+ Q +I D++ ++ M R+LQG+VGSGKT+VAL AM Sbjct: 269 TAFDGRL--------PFTLTEGQRKVSAEIFTDLATEHPMHRLLQGEVGSGKTMVALRAM 320 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYT-----------QNTQIIVEIITGNMPQAH 363 A V+AGGQA ++AP +LAQQH+ + + T V ++TG+M A Sbjct: 321 LAVVDAGGQAAMLAPTEVLAQQHHRSVTEMMGELAEGGMLGGAETATKVVLLTGSMGAAA 380 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APH 422 RR AL +A G+A ++IGTHAL +D ++++ L LV+VDEQHRFGV+QR L K PH Sbjct: 381 RRHALLDLATGEAGLVIGTHALIEDKVKFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPH 440 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVV 478 +L+MTATPIPRT+ +T GD++ S + + PAGR PI + ++P + ER++ Sbjct: 441 LLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAADKPHFLARAWERVREE 500 Query: 479 LSEGKKAYWICPQIEEKKESNFRSV--------VERFNSLH-----EHFTSS------IA 519 + G +AY +CP+I ++++ ++ ER L E + + Sbjct: 501 VEGGHQAYVVCPRIGDEEDDPKKAGRKKSPEDEAERRPPLAVLDIAEQLAAGPLRGLRVE 560 Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579 ++HGRM DK++VM F G +L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQL Sbjct: 561 VLHGRMQPDDKDAVMRRFAAGEADVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQL 620 Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639 RGRVGRG C+L+ P + + RL+ + +T DGF ++ DL+QR+EG++LG QS Sbjct: 621 RGRVGRGSAPGLCLLVTEMPEASPARQRLTAVASTLDGFELSRIDLEQRREGDVLGQAQS 680 Query: 640 GMPKFLIAQPELHDSLLEIARKDAKH-ILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698 G L + D + ++ I+ DP+LT + G +R L E Q++ Sbjct: 681 GTRSSLRMLAVIDDEEIIAEAREEAAGIVAADPELTGLPG--LRTALEALLDEEREQYLE 738 Query: 699 AG 700 G Sbjct: 739 KG 740 >gi|260495036|ref|ZP_05815165.1| ATP-dependent DNA helicase RecG [Fusobacterium sp. 3_1_33] gi|260197479|gb|EEW94997.1| ATP-dependent DNA helicase RecG [Fusobacterium sp. 3_1_33] Length = 689 Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 224/611 (36%), Positives = 346/611 (56%), Gaps = 24/611 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK-RRPYKILLNDGTGEI 101 DL++Y P ++ DR KI E+ V + + + ++ ++ K ++ DGTG + Sbjct: 38 DLIYYFPRAYDDRTNIKKIGELKFNEYVVLKATVMSAVNLTVRSGKKIVKAMVTDGTGIM 97 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVY 160 +L+F +K G + G+ KK +++P Y +F Q V+ I +Y Sbjct: 98 EILWF--GMPYIKKSLKIGEEYLFIGQTKK-STVFQLINPEYKLFSGQQKVSENEILPIY 154 Query: 161 SLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 S ++ + +K++ + L L E I +L+++ A IH P K+ E Sbjct: 155 SSNKNITQNSLRKLVEKFLVNFLNYFEENIPDELIKEYKIMERKSAIKNIHYPVSMKEIE 214 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN----VEGKIAQKILRNIPFSPTK 275 A+ R A + L +++ +F E N + + +K L +PF+ T Sbjct: 215 ---EAKRRFA--IEELLILELGILKNRFIIENSNSKNYEVEGKKEKVKKFLSFLPFTLTN 269 Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 +Q+ IK+I ++S + R++QGDVGSGKT+VA++ + E G Q +MAP ILA Sbjct: 270 AQKKVIKEIYDEISNGKIVNRLIQGDVGSGKTVVAMVMLIYMAENGYQGALMAPTEILAN 329 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 QHY IK+ + + VE++T ++ + + LE IA+G I+IGTH+L +D + + KL Sbjct: 330 QHYLGIKERLEKIGLRVELLTSSIKGKKKNEILEGIANGDVDIVIGTHSLIEDDVIFKKL 389 Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 L+++DEQHRFGV QR KL +K ++L+M+ATPIPR+L L+ GD+D+S I E P GR Sbjct: 390 GLIVIDEQHRFGVNQRNKLREKGFLGNLLVMSATPIPRSLALSIYGDLDLSIIDELPPGR 449 Query: 456 KPIKTVIIPINRIDEVIERLKVVL----SEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511 PIKT I DE +E++ + + G +AY++ P IE + +SV + + Sbjct: 450 TPIKTKWIA---NDEDLEKMYDFIYKKVNAGNQAYFVAPLIETSDKMALKSVDKVSEEIE 506 Query: 512 EHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 F++ I IIHG+M +K+ VM FKN +LIATTVIEVGIDV ++I+ I NAE Sbjct: 507 RKFSNKKIGIIHGKMKAKEKDEVMLKFKNKEYDILIATTVIEVGIDVPASTIMTIYNAER 566 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630 FGL+ LHQLRGRVGRG + S C L+ + +++NS RLS+++ TEDGF IAEEDLK R Sbjct: 567 FGLSALHQLRGRVGRGSKQSYCFLISN-SITENSKQRLSIMEETEDGFRIAEEDLKLRNS 625 Query: 631 GEILGIKQSGM 641 GEI G++QSG Sbjct: 626 GEIFGLRQSGF 636 >gi|239623788|ref|ZP_04666819.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521819|gb|EEQ61685.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 685 Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 222/669 (33%), Positives = 367/669 (54%), Gaps = 21/669 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP-KISEISEERIV 70 P+ + +G+G+K K+ DLL Y+P ++ D + P I ++ ++ ++ Sbjct: 6 PVHSLKGIGEKTGKLFEKL------GVFSIDDLLSYYPRAY-DTYEAPVSIGQLKDQTVM 58 Query: 71 TITGYISQHSSF-QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 + + + ++ +L + + L D TG + + ++ ++ G G++ Sbjct: 59 AVESVLLKGANLVRLNHIQIVSVQLKDITGSLQVSWY--NMPYMRANLKSGETYVFRGRV 116 Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + + R++M P + + ++ VY GLS K +AL + E++ Sbjct: 117 VRKRGRLVMEQPEVFTPEAYEAVAHSMQPVYGQTRGLSNKTIVKAQQQALEVRRLEREYM 176 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249 L +K I A IH P + + AR+RL +DE + + M K+ ++ Sbjct: 177 PAGLRRKYELAEINYAIEHIHFPADRTELLF---ARKRLVFDEFFMFLVGVRRM-KEHRE 232 Query: 250 EIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 + P V+ K L++ +P++ T +QE A++++ +DM M R++QGDVGSGKT+ Sbjct: 233 DKHSPYVVKRVQEAKALKSSLPYALTGAQERALEEVYRDMEGGLVMNRLIQGDVGSGKTI 292 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQAHRRK 366 +A++A+ A G Q +M P +LA+QHYE + + I + ++TG+M +R Sbjct: 293 IAILALVQAAYNGYQGALMVPTEVLARQHYESMISLFEAHGITKVPVLVTGSMTAKEKRL 352 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426 A +IA +A IIIGTHAL Q+ + Y L LVI DEQHRFGV QR L+ K PHVL+M Sbjct: 353 AYGKIAGHEADIIIGTHALIQEKVVYDNLALVITDEQHRFGVGQRELLSTKGQEPHVLVM 412 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486 +ATPIPRTL + GD+DIS I E P GR+ I+ ++ + ++ + G +AY Sbjct: 413 SATPIPRTLAIIIYGDLDISVIDELPQGRQAIRNCVVDPGYRPKAYSFIQKQVEMGHQAY 472 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKL 544 ICP +E + +V++ SL S IA+ +HG+M +K ++M+ F G ++ Sbjct: 473 IICPMVEASEMIEAENVLDYTKSLRTELPSQIAVEYLHGKMKAKEKNAIMERFAAGGIQV 532 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 L++TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG+ S CI++ + K++ Sbjct: 533 LVSTTVIEVGVNVPNATVMMIENAERFGLAQLHQLRGRVGRGKAQSYCIMV-NCSHDKDT 591 Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 RL +L + DGF IA EDLK R G+I G++QSG +F +A ++L+ ++ Sbjct: 592 GERLDILNRSNDGFYIASEDLKLRGPGDIFGLRQSGDMEFKLADIFTDANILKRVSEEVD 651 Query: 665 HILTQDPDL 673 +L +DP L Sbjct: 652 LLLDKDPQL 660 >gi|169335590|ref|ZP_02862783.1| hypothetical protein ANASTE_02005 [Anaerofustis stercorihominis DSM 17244] gi|169258328|gb|EDS72294.1| hypothetical protein ANASTE_02005 [Anaerofustis stercorihominis DSM 17244] Length = 675 Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 209/560 (37%), Positives = 311/560 (55%), Gaps = 30/560 (5%) Query: 127 GKIKKLKNRIIMVHPHYI-------FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 GK+++ N + +V P Y N + +PL S L+ FKK I+ AL Sbjct: 113 GKVERNGNYLEIVSPKYSKLEDNVSIKNGLNPIYPL-----SAKNKLTNKDFKKFILSAL 167 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 +++ ++ ++I D+ ++ S+ EA+ IH P+ +D T A ER+ +DE ++ Sbjct: 168 TKIDII-DYIPYDIKKEYGLISLDEAYKNIHEPKTLED---TLKANERMTFDEFCGFNLS 223 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 ++L + + G V K K + +PF T SQ I +I +D+ +M R++Q Sbjct: 224 IILNKNLNLGKKGEIFEVINK--DKFMNLLPFKLTPSQNKVISEIEEDLMSGVKMNRLVQ 281 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT+VAL ++ A+ G QA AP ILA QH+E IK+ + VE++ M Sbjct: 282 GDVGSGKTIVALYSIYLAITNGYQAAFCAPTKILAMQHFESIKEIFDKLDVNVELLHSKM 341 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +R+A ERI G++ II+GTHA+F ++Y L L ++DEQHRFGV QR L +K Sbjct: 342 TAKEKREAYERIESGESKIIVGTHAVFSTKVKYNNLGLAVIDEQHRFGVAQRGFLDKKGE 401 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 + H L+M+ATPIPRTL L+ D+D+S I +KP RK IKT + D + + Sbjct: 402 SVHTLVMSATPIPRTLTLSIYKDLDVSIIDKKPGNRKEIKTYFKDYSYYDRIYRFALKEI 461 Query: 480 SEGKKAYWICPQI-----EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534 ++ + Y +CP I E +++ + F +++ A+IHG+M + +KE +M Sbjct: 462 AKKNQVYVVCPSIDSDDLEAAEKTYKKLKKTYFKNVNA------ALIHGKMDEEEKEKIM 515 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 + F G LIAT+VIEVGID DA++IIIE A+ FGLA LHQLRGRVGR ++ S CIL Sbjct: 516 EDFYKGEISALIATSVIEVGIDSKDATLIIIEGADRFGLASLHQLRGRVGRNDKDSYCIL 575 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 L P SK S RL+ L DGF IA DLK R G+ILG +QSG + I + + Sbjct: 576 LSENP-SKKSIERLNFLSKNNDGFEIALFDLKTRGSGDILGYRQSGKGGYNIYKLIENSE 634 Query: 655 LLEIARKDAKHILTQDPDLT 674 L ++ IL D ++ Sbjct: 635 LFNKSKMAMDKILNDDNEVN 654 >gi|229815441|ref|ZP_04445773.1| hypothetical protein COLINT_02489 [Collinsella intestinalis DSM 13280] gi|229808974|gb|EEP44744.1| hypothetical protein COLINT_02489 [Collinsella intestinalis DSM 13280] Length = 727 Score = 340 bits (873), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 226/694 (32%), Positives = 360/694 (51%), Gaps = 44/694 (6%) Query: 40 RFIDLLFYHPSSFID--RHYRPKISEISEERIVTITGYISQHSSFQLQKRRP----YKIL 93 R DLL + P ++D R Y + + + E + TI G + + S+ K P ++ Sbjct: 45 RVGDLLSHIPFRYLDFTRAYTIESAPLGE--VCTIVGTVDKVSNRPTSK--PGMTLTEVF 100 Query: 94 LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153 L D +G + + FF K L F G ++ + GK++ M PH+ + Sbjct: 101 LVDESGVLKVAFF--KQPWLAREFARGDRLALIGKMEFAYGFKQMASPHFEKLDGGGARA 158 Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213 I+ V+ + G+S ++I AL ++ V + + L ++ S++ A IH PR Sbjct: 159 G-IQPVHRVTDGISQAWMRRIASVALEQVGVFCDPVPAPLRARRQLMSLSRALRTIHFPR 217 Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 + + AR RLAYDEL+ Q+AL L ++ + G + + +PF+ Sbjct: 218 LMNEVQL---ARRRLAYDELMYLQLALRLRNDGDLLDVAPLAHRVGARVRAMREALPFAL 274 Query: 274 TKSQESAIKDILQDMSQKNRML-RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332 + QE+A+ DIL DM ++ R+L GDVG+GKT VA +A+A A ++G QA +MAP G+ Sbjct: 275 SDEQEAAVSDILGDMCDAGHVMNRLLLGDVGTGKTAVACVALACAADSGNQACVMAPTGV 334 Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392 LA+Q+ I ++TG+ + R LER+A G ++ GTHA+ D +++ Sbjct: 335 LARQYAVKSGPLLDAAGISWALLTGSTAASERSSILERVASGALDVVFGTHAVLNDDLRF 394 Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452 +L LV++DEQHRFGV QR L K +L+MTATPIPRTL L+ GD+D S I +P Sbjct: 395 RRLSLVVIDEQHRFGVGQRNVLRGKGPGADLLVMTATPIPRTLALSVYGDLDTSIIRHRP 454 Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN---- 508 + TV + D ++ L++G++AY ICP + + V + Sbjct: 455 VPGAGVSTVALESGSRDIAYGAVRDALAQGRQAYIICPMVSPQDAPEQLDDVPGLDIGES 514 Query: 509 -------SLHEHFTSS-----------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550 +LH+ T + + ++HG+M+ K+ V+D F G +L++TTV Sbjct: 515 GRARQAVTLHDVETEASDIRRLIPGARVEVMHGKMAPKAKDDVIDRFGKGEIDILVSTTV 574 Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS----YT 606 +EVG+DV +A++++IEN E FGLA LHQLRGRVGRG +C +L + S + Sbjct: 575 VEVGVDVPNATVMLIENGERFGLATLHQLRGRVGRGSNPGTCYVLTEVRPKRGSKSPAWE 634 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666 RL L T+DGF +AE DL+ R EGEILG++Q G + L+E A +DA+ + Sbjct: 635 RLQALAKTDDGFELAEMDLRLRHEGEILGLRQHGGVALCFVDLDADTDLIEAAHEDAEEL 694 Query: 667 LTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 L DLT+ +R + + +Y + F+ + G Sbjct: 695 LRYSRDLTACATMPMRHEV-IARYGDVFKEVSGG 727 >gi|256397125|ref|YP_003118689.1| ATP-dependent DNA helicase RecG [Catenulispora acidiphila DSM 44928] gi|256363351|gb|ACU76848.1| ATP-dependent DNA helicase RecG [Catenulispora acidiphila DSM 44928] Length = 746 Score = 340 bits (873), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 231/717 (32%), Positives = 369/717 (51%), Gaps = 80/717 (11%) Query: 28 SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR 87 +K+++ G +T DLL ++P ++ R ++SE+ TI +++ S + R Sbjct: 18 AKVLHTGLGLDT-VGDLLRHYPRKYVKRGELTELSELEPGTEATIVAQVTKVSRRSMAAR 76 Query: 88 RPYKILLN-----DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH 142 R + + D EIT FF + N G GK+ + +I + +P Sbjct: 77 RGQMMTVEVRDAADTAVEIT--FFNPRA---ANALKPGMLGMFAGKVGEYHGKIQLTNPE 131 Query: 143 Y--IFHNSQDVN-----------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189 + + +++D PL + LP+ + +I + + + P + Sbjct: 132 FAKLDADTEDAGDSPIDNWAGELMPLYPSTGGLPSWKIARCVRMVIDQLDADIEDDP--M 189 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249 + + ++ ++ EAF IH P D+ + AR+RL +DE L Q+ L R+ K Sbjct: 190 PRPVRARQGLLTLTEAFRRIHRP---DDWPEIAVARKRLKWDEALPMQVVLAQRREALKA 246 Query: 250 EIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 +P V G + +PF+ T Q ++I D++ ++ M R+LQGDVGSGKT+ Sbjct: 247 LPAVPRRRVPGGLLDAFDAALPFTLTAGQRQVGEEIEADLASEHPMHRLLQGDVGSGKTM 306 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY------------------------ 344 VAL AM A V+AGGQAV++AP +LAQQH+ I + Sbjct: 307 VALRAMLAVVDAGGQAVMLAPTEVLAQQHHRSIVQMLGAGADVPMDLFSETAAPDAAPFD 366 Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404 ++ V ++TG+ RR L A G A I+IGTHA+ QD +Q+ L LV+VDEQH Sbjct: 367 PNRKRVRVALLTGSQNAKDRRTNLLDAASGTAGIVIGTHAVIQDHVQFADLGLVVVDEQH 426 Query: 405 RFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463 RFGV+QR L K PHVL+MTATPIPRT+ +T GD++ S ++E PAGR PI T ++ Sbjct: 427 RFGVEQRDALRAKGEDPPHVLVMTATPIPRTVAMTVFGDLETSVLSELPAGRSPIATHVV 486 Query: 464 PI----NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS----------------- 502 + V ER++ + G++AY +CP+I E+ S S Sbjct: 487 AAHEHPSHFTRVWERIREEVGAGRQAYVVCPRIGEESGSGEVSDDGSELVSEPGQQRPPL 546 Query: 503 -VVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 VV+ L E + ++HGRM+ DK++VM ++ +L+ATTVIEVG++V + Sbjct: 547 AVVDVAAKLAEGPLKGLRVGMLHGRMAPDDKDAVMRAYAGHELDVLVATTVIEVGVNVPN 606 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619 +++I++ +A+ FG++QLHQLRGRVGRG+ C+L+ P + RL+ + +T DGF Sbjct: 607 STVIVVMDADRFGVSQLHQLRGRVGRGKWPGLCLLVTESPDGAPARERLAAVASTLDGFE 666 Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTS 675 +++ DL RKEG++LG QSG L + D ++ AR +A ++ DP L + Sbjct: 667 LSKIDLAIRKEGDVLGATQSGYRSSLRMLSVIDDEDIIRAARDEATPLVEADPALNA 723 >gi|169824372|ref|YP_001691983.1| ATP-dependent helicase [Finegoldia magna ATCC 29328] gi|167831177|dbj|BAG08093.1| ATP-dependent helicase [Finegoldia magna ATCC 29328] Length = 678 Score = 340 bits (872), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 230/669 (34%), Positives = 360/669 (53%), Gaps = 32/669 (4%) Query: 13 LSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI-SEERI 69 LS +G+GKK L+ IIN DLL Y P + +R I + EE Sbjct: 3 LSEIKGIGKKKLEVLNSMGIININ--------DLLNYFPYRYENRSIIKNIIDTRDEENC 54 Query: 70 VTITGYISQHSSFQLQKRRPYKILLN-DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 V +IS+ + L++ + D T +I++ +F ++N + GK Sbjct: 55 VIKVKFISKPITKYLRRNLNLTTAIAFDDTSKISVSWF--NQPFIRNQILPNTTYYLYGK 112 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-----P 183 I++++N+ + P I + +I +Y + G++ + K + A+ Sbjct: 113 IQRVQNQFKISSP--ILSKTFGGKLGIIYPIYKVKKGITNNDMIKFVDFAIKHCIDEIKN 170 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 V+P + K+ I N I N K D+ AR L +E++ Q+A+ M Sbjct: 171 VIPYSMIKNY-------DIENKRNAIKNIHKPVDYMQFKRARTALVLEEVIIMQLAMKSM 223 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 + ++ I + + I + ++ F TK Q AIKDI DM+ + RM R++QGDVG Sbjct: 224 KTSLNQQNYIKLQSDESI-NIFINSLKFELTKGQLEAIKDIEMDMTSEKRMNRLVQGDVG 282 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA A+ + +G Q+ MAP ILA QHYE + + I V ++ ++ ++ Sbjct: 283 SGKTIVAEAAIFKSHSSGYQSAFMAPTDILATQHYESLSEDFSKFGIKVCLLKSDLTKSE 342 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 + L+ I G +I+GTHA+ QD +++ +L LVI DEQHRFGV QR K++ K P V Sbjct: 343 KDLVLKGIKSGYFDVIVGTHAIIQDFVEFKRLGLVITDEQHRFGVGQRKKISDKGQNPDV 402 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL L+ GD+DIS I E P GRK I+T + + + + ++ + G Sbjct: 403 LVMTATPIPRTLALSYYGDLDISTINEMPKGRKIIETYSVGFSYEKRIADFIRKQVDNGF 462 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541 +AY +CP IEE + +V E +N L E+F+ ++ ++HG+M +KE M F +G Sbjct: 463 QAYIVCPLIEESESLELENVTELYNRLTGEYFSDINVGMLHGKMKSSEKEETMKDFVDGK 522 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 K+L++TTVIEVG++V A++I+I NAE FGL+QLHQLRGRVGR + S CIL+ + S Sbjct: 523 TKILVSTTVIEVGVNVRKANVIVIYNAERFGLSQLHQLRGRVGRSSDQSYCILI-NKAHS 581 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 R++++ T GF ++++DL R G++LG +QSG+P IA E L+E A Sbjct: 582 DEQMERMNIMVKTNSGFELSQKDLMMRGSGDLLGTRQSGIPLLNIADLEKDYDLIEKAAV 641 Query: 662 DAKHILTQD 670 +I T D Sbjct: 642 ITDYIYTND 650 >gi|167740105|ref|ZP_02412879.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei 14] Length = 413 Score = 340 bits (872), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 181/397 (45%), Positives = 253/397 (63%), Gaps = 10/397 (2%) Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348 +Q + M R+LQGDVGSGKT+VA +A A A++AG QA +MAP ILA+QH ++ + + Sbjct: 1 TQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEPL 60 Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408 + V + G++ +R ALE A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV Sbjct: 61 GVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTHAMIQDTVEFARLGLVIVDEQHRFGV 120 Query: 409 QQRLKLTQKATA---------PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 +QRL L KA PH L+M+ATPIPRTL +T D+D+S I E P GR PI Sbjct: 121 EQRLALRAKAANAADGAAGFQPHQLMMSATPIPRTLAMTYYADLDVSTIDELPPGRTPIL 180 Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518 T ++ R DEVI R++ G++ YW+CP IEE + ++ VE + +L + Sbjct: 181 TRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEESETLQLQTAVETYETLAAALPELKV 240 Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578 ++HGR++ +K +VMD+F +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQ Sbjct: 241 GLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQ 300 Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638 LRGRVGRG S C+L+Y PLS RL ++ T DGF IA DL+ R GE LG +Q Sbjct: 301 LRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRETTDGFEIARRDLEIRGPGEFLGARQ 360 Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 SG A E L+E AR A ++ P++ + Sbjct: 361 SGAAMLRFADLENDGWLIEPARDAAARLIAAHPEVVA 397 >gi|269957066|ref|YP_003326855.1| ATP-dependent DNA helicase RecG [Xylanimonas cellulosilytica DSM 15894] gi|269305747|gb|ACZ31297.1| ATP-dependent DNA helicase RecG [Xylanimonas cellulosilytica DSM 15894] Length = 749 Score = 339 bits (870), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 210/695 (30%), Positives = 356/695 (51%), Gaps = 70/695 (10%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKI--LLNDGTGE 100 DLL ++P + + +++++ V++ + + + R ++ +++DG E Sbjct: 34 DLLRHYPRRYAEPGQLTDMAKLAIGEHVSVLARVERTAVRSNASRNGARLEAVVSDGRHE 93 Query: 101 ITLLFFYRKTEMLK---NVFFEGRKITVTGKIKKLKNRIIMVHPHYIF-HNSQDVN---- 152 +TL FF + L+ G TG + + + HP Y+ DV Sbjct: 94 LTLTFFAKHPGALRYHEQRLVGGASGVFTGVVGVYRGTRQLTHPDYLMVGEGGDVTDDES 153 Query: 153 --------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAE 204 P+ A S+PT + + +++ L+ V P+ + ++ + PS + Sbjct: 154 ALYLASLPIPMYPATASMPT-WKIQRCVRTVLDTLTEDDV-PDPVPLEVRARAGLPSRYD 211 Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE-GKIAQ 263 A ++H P+ ++ R RL ++E Q A+ R + E G + Sbjct: 212 ALKLVHTPQHTQEAYR---GRHRLRFEEAFVLQAAIAQRRARTAAEDATARPARPGGLLD 268 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 + +PF+ T Q S +D+ D++Q M R+LQG+VGSGKT+VAL AM ++AGGQ Sbjct: 269 RFDAALPFTLTSGQVSVGEDLAYDLAQPRPMQRLLQGEVGSGKTVVALRAMLQVIDAGGQ 328 Query: 324 AVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIA 372 A ++AP +LA QH ++ V ++TG++P A R+ AL + A Sbjct: 329 AALLAPTEVLAAQHARTLRTLLGPLAEGGLLGGAEDGTRVALLTGSLPAAARKTALLQAA 388 Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPI 431 G+A +++GTHAL +++Q+ L LV+VDEQHRFGV+QR L K APH+L+MTATPI Sbjct: 389 SGEAGVVVGTHALLSENVQFADLGLVVVDEQHRFGVEQRDALRAKGKVAPHLLVMTATPI 448 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWI 488 PRT+ +T GD+++S +T+ PAGR I TV++P + +R++ + G +AY + Sbjct: 449 PRTVAMTVFGDLEVSSLTQIPAGRAGISTVVVPAANPRWMQRTWQRVREEVDAGHRAYVV 508 Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSS------------------------------I 518 CP+I E + ++ F+ + + S + Sbjct: 509 CPRIHPDDEVSGKAAATDFDDVPDFLALSAGDVPDRTPLRAVLEVADQLRETPALAGLAV 568 Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578 ++HG++ +K++ M F GT ++L++TTVIEVG+DV +A+++++ +A+ FGL+QLHQ Sbjct: 569 DVLHGQLPPAEKDAAMTRFAAGTSQVLVSTTVIEVGVDVPEATVMVVFDADRFGLSQLHQ 628 Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638 LRGRVGRG C+L+ + R+ L T DGF +A+ DL+ R EG++LG Q Sbjct: 629 LRGRVGRGSAPGLCLLVSTAEPGTPAAARVEALAETTDGFRLAQLDLELRSEGDVLGAAQ 688 Query: 639 SGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPD 672 SG L + D+ L+E AR++A ++ D D Sbjct: 689 SGRTSGLRLLRVVKDADLIEEARREAAGVVAADVD 723 >gi|317472737|ref|ZP_07932050.1| ATP-dependent DNA helicase RecG [Anaerostipes sp. 3_2_56FAA] gi|316899763|gb|EFV21764.1| ATP-dependent DNA helicase RecG [Anaerostipes sp. 3_2_56FAA] Length = 458 Score = 339 bits (870), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 178/432 (41%), Positives = 279/432 (64%), Gaps = 6/432 (1%) Query: 242 LMRKQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 LM+++ ++E PI V G+ A ++++++P+ T +Q+ A+ ++ +D+ + M R++QG Sbjct: 8 LMKQEHREEKNRYPIPVCGE-ADRLIQSLPYELTGAQKRALLEMQKDLMGEKVMNRLVQG 66 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT++A+I + +AG Q V+MAP +LA QHYE ++ + ++TG++ Sbjct: 67 DVGSGKTILAVILLLMCAKAGYQGVLMAPTEVLASQHYETFQELLGPFGVSAALLTGSVK 126 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 +R+ + I + + I+IGTHAL QD+++Y +L LVI DEQHRFGV+QR L++K Sbjct: 127 AKEKREIYQGIKNHEYDIVIGTHALIQDAVEYDRLALVITDEQHRFGVRQREILSKKGKE 186 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 PHVL+M+ATPIPRTL + GD+D+S I E P R PIK ++ + ++ ++ Sbjct: 187 PHVLVMSATPIPRTLAIIMYGDLDVSVINELPKNRLPIKNCVVNQSYRPNAYRFMEKQVA 246 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFK 538 EG++ Y ICP +EE + +V++ N L E F SI ++HG+M +K+ +MD F Sbjct: 247 EGRQIYIICPMVEESEAMEGENVIQYANMLREQFPPSIQIGVLHGKMKPKEKQKIMDEFS 306 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 + ++L++TTVIEVG++V +A+++++ENAE FGLAQLHQLRGRVGRGE S CI + Sbjct: 307 ECSIQILVSTTVIEVGVNVPNATVMMVENAERFGLAQLHQLRGRVGRGEHQSYCIFMSGV 366 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 K + RL VL + DGF IA +DLK R G+ G++QSGM F++A + LL+ Sbjct: 367 K-KKETMERLEVLNKSNDGFYIANQDLKLRGPGDFFGVRQSGMMDFVLADIYTNADLLKQ 425 Query: 659 ARKDAKHILTQD 670 A DA H L ++ Sbjct: 426 A-SDAVHQLCEE 436 >gi|183981755|ref|YP_001850046.1| ATP-dependent DNA helicase RecG [Mycobacterium marinum M] gi|183175081|gb|ACC40191.1| ATP-dependent DNA helicase RecG [Mycobacterium marinum M] Length = 743 Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 215/660 (32%), Positives = 352/660 (53%), Gaps = 69/660 (10%) Query: 43 DLLFYHPSSFIDRHYRPKIS----EISEERIVTITGYISQHSSFQLQK---RRPYKILLN 95 DLL ++P S+++ R E+ E +TI I++ SF ++K R +I L Sbjct: 31 DLLRHYPRSYVEGGARRGTDDEQPEVGEH--ITIVDVITETKSFPMKKTPRRLCLRITLG 88 Query: 96 DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF-- 153 G ++T FF + +K + ++ ++G++ K + + HP ++ +S D Sbjct: 89 SGRNKVTATFF--NADYIKKGLTKNTRVMLSGEVGYFKGVMQLTHPAFLILDSPDGQHHG 146 Query: 154 -----PLIEAVYSLPTGLSVDLFK-------------------KIIVEALSRLPVLPEWI 189 + +A ++ L+++ F+ K + + L L + + + Sbjct: 147 TKSLKSIADASQAISGELAMEEFERRFFPIYPASTKVQSWDIFKCVRQVLEVLDPVDDPL 206 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249 L + S +A IH A+D AR RL +DE + Q AL+ R Sbjct: 207 PAALRAEHGLISEDDALRAIH---LAEDESEREQARRRLTFDEAVGLQWALVARRHGELS 263 Query: 250 EIGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 E G P +A ++L +PF T Q + ++ ++ M R+LQG+VGSGKT+ Sbjct: 264 ESGPPAPARADGLAAELLARLPFELTAGQREVLDELSDGLAATRPMNRLLQGEVGSGKTI 323 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITG 357 VA++AM V+AG Q ++AP +LA QH I + V ++TG Sbjct: 324 VAVLAMLQMVDAGYQCALLAPTEVLAAQHLLSINDVLGPLAMGGQLGGADNATRVALLTG 383 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 +M +++ IA GQ I+IGTHAL QD+++++ L +V+VDEQHRFGV+QR +L K Sbjct: 384 SMTAGQKKQVRAEIASGQVGIVIGTHALLQDAVEFHNLGMVVVDEQHRFGVEQRDQLRAK 443 Query: 418 ATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDE 470 A A PH+L+MTATPIPRT+ LT GD++ S + E P GR+PI T +I + +D Sbjct: 444 APAGITPHLLVMTATPIPRTVALTVYGDLETSTLRELPRGRQPITTNVIFVKDKPAWLDR 503 Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS----LHEHFTSS------IAI 520 +R+ ++ G++AY + P+I+E ES+ R ++ L+ ++ +A+ Sbjct: 504 AWQRIVEEVAAGRQAYVVAPRIDESDESDNAENGARPSATAVGLYSRLQAAELAGLRLAL 563 Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580 +HGR+S +KE+ M +F+ G +L+ TTVIEVG+DV +A+++++ +A+ FG++QLHQLR Sbjct: 564 MHGRLSADEKEAAMAAFRAGNVDVLVCTTVIEVGVDVPNATVMLVMDADRFGISQLHQLR 623 Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 GR+GRGE S C+L + RL + T DGF +AE DLK+R+EG++LG QSG Sbjct: 624 GRIGRGEHPSLCLLASWVSPGSPAGRRLRAVAETMDGFDLAELDLKERREGDVLGRNQSG 683 >gi|325661174|ref|ZP_08149801.1| hypothetical protein HMPREF0490_00534 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472681|gb|EGC75892.1| hypothetical protein HMPREF0490_00534 [Lachnospiraceae bacterium 4_1_37FAA] Length = 533 Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 189/506 (37%), Positives = 297/506 (58%), Gaps = 10/506 (1%) Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232 K + +AL L + E + + K + IH P++ ++F ARERL ++E Sbjct: 8 KAVRQALDYLELQKEILPATVRMKYHLAEYNFSVRGIHFPKEKQEF---YQARERLVFEE 64 Query: 233 LLAGQIALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 L ++L M+ K+ + P++ +I + L+ +P+ T +Q+ + + +DM+ Sbjct: 65 FLVFILSLRQMKEKKERSRNQFPVHPSEEI-EVFLKKLPYELTNAQKKVWEQLQKDMAGT 123 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI- 350 + M R++QGDVGSGKT++A++++ + G Q +MAP +LA+QH++ I + + +I Sbjct: 124 HTMARLIQGDVGSGKTIIAVLSLMSVAFCGWQGAMMAPTEVLARQHFDSITEMFEQYEIP 183 Query: 351 -IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409 VE++TG+M +R A RI GQA II+GTHAL Q+ + Y L LV+ DEQHRFGV+ Sbjct: 184 LKVELLTGSMTAKEKRLAYGRIESGQAQIIVGTHALIQEKVIYANLALVVTDEQHRFGVK 243 Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469 QR + K PH+L+M+ATPIPRTL + GD+D+S I E PA R PIK ++ + Sbjct: 244 QREQFAGKGELPHILVMSATPIPRTLAIILYGDLDVSVIDELPANRLPIKNCVVDTSYRK 303 Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSD 527 + ++ ++EG++ Y ICP +EE + +V++ L I + +HG+M Sbjct: 304 TAYQFIRRQVAEGRQCYVICPMVEESEHLEAENVIDYAEKLQGELGEDIIVDFLHGKMKQ 363 Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587 K+ +M+ F ++L++TTVIEVGI+V +A++++IENAE FGLAQLHQLRGRVGRG+ Sbjct: 364 SQKDEIMERFGKNESQVLVSTTVIEVGINVPNATVMMIENAERFGLAQLHQLRGRVGRGK 423 Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 S CI + K + RL +L + DGF IA EDLK R G++ GI+QSG+ F + Sbjct: 424 YQSYCIFMSGSK-GKETKERLEILNRSNDGFYIANEDLKLRGPGDLFGIRQSGLMDFRLG 482 Query: 648 QPELHDSLLEIARKDAKHILTQDPDL 673 +L+ A + A IL L Sbjct: 483 DVFQDAKILQRANEAADWILKNGKGL 508 >gi|240168966|ref|ZP_04747625.1| ATP-dependent DNA helicase RecG [Mycobacterium kansasii ATCC 12478] Length = 738 Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 217/665 (32%), Positives = 352/665 (52%), Gaps = 79/665 (11%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEE--RIVTITGYISQHSSFQLQK---RRPYKILLNDG 97 DLL ++P S+++ R + + E +TI I++ +F ++K R+ +I L G Sbjct: 30 DLLRHYPRSYVEGGARRGVGDERPEAGEHITIVDVITETETFPMKKTPRRQCLRITLGTG 89 Query: 98 TGEITLLFF---YRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-- 152 ++T FF Y K ++ KN K+ ++G++ K + + HP ++ +S D Sbjct: 90 RNKVTATFFNADYIKKDLTKNT-----KVMLSGEVGFFKGVMQLTHPAFLILDSPDGKNH 144 Query: 153 ----------------------------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184 FP+ A + S D+FK + + L L Sbjct: 145 GTRSLKSIADASKAISGEVAMEEFERRFFPIYPASTKVQ---SWDIFK-CVRQVLEVLDP 200 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 + + + D+ + S EA IH A+D ARERL +DE + Q AL+ R Sbjct: 201 VDDPLSPDVRAEHGLVSEDEALRAIH---LAEDEPDRRRARERLTFDEAVGLQWALVARR 257 Query: 245 KQFKKEIGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 E G P +A ++L +PF T Q + + +++S M R+LQG+VG Sbjct: 258 HGELSESGPPAPPRSDGLAAELLGRLPFELTAGQREVLAVLSEEISATRPMNRLLQGEVG 317 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIV 352 SGKT+VA++AM V+AG Q ++AP +LA QH I + V Sbjct: 318 SGKTIVAVLAMLQMVDAGYQCALLAPTEVLAAQHLTSINDILGPLAMGGQLGGADNATRV 377 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 ++TG+M ++ +A G+ I++GTHAL QD+++++ L +V+VDEQHRFGV+QR Sbjct: 378 ALLTGSMTAGQKKDVRAAVAGGEVGIVVGTHALLQDAVEFHNLGMVVVDEQHRFGVEQRD 437 Query: 413 KLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-- 467 +L KA A PH+L+MTATPIPRT+ LT GD++ + + E P GR+PI T +I + Sbjct: 438 QLRGKARAGITPHLLVMTATPIPRTVALTVYGDLETATLRELPRGRQPITTNVIFVKDKP 497 Query: 468 --IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV----VERFNSLHEHFTSS---- 517 +D +R+ ++ G++AY + P+I+E E + E L+ +S Sbjct: 498 AWLDRAWQRIIEEVAAGRQAYVVAPRIDESDEPDKEPAGTKPAETAEGLYARLSSRELAN 557 Query: 518 --IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + ++HGR+S +K++ M +F+ G +L+ TTVIEVG+DV +A+++++ +A+ FG++Q Sbjct: 558 LRLGLMHGRLSADEKDAAMAAFRAGRIDVLVCTTVIEVGVDVPNATVMLVMDADRFGISQ 617 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGR+GRG S C+L P + + RL + T DGF +A+ DLK+RKEG++LG Sbjct: 618 LHQLRGRIGRGAHPSLCLLASWVPPASPAGERLRAVAKTMDGFALADLDLKERKEGDVLG 677 Query: 636 IKQSG 640 QSG Sbjct: 678 RNQSG 682 >gi|332530086|ref|ZP_08406036.1| ATP-dependent DNA helicase RecG [Hylemonella gracilis ATCC 19624] gi|332040559|gb|EGI76935.1| ATP-dependent DNA helicase RecG [Hylemonella gracilis ATCC 19624] Length = 752 Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 236/705 (33%), Positives = 362/705 (51%), Gaps = 82/705 (11%) Query: 42 IDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101 ++L + P + D I+E+ + + G + + S +++ RR + D G Sbjct: 41 MELALHLPLRYEDETTLTPIAELRDGDMAQAEGVVRE-SRVEVRARRQLIARIEDDAGHT 99 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA--- 158 LL F + + G+++ V G+++ MVHP + PL +A Sbjct: 100 LLLRFLNFYPSQQKLLSVGQRVRVRGEVRGGFLGREMVHPEC---KAVQAGAPLAQALTP 156 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQ--------KKSFPSIAEAFNIIH 210 VY GL +K + AL +L VL E + LQ +P + A + +H Sbjct: 157 VYPTTAGLPQAYLRKAVGRALDKL-VLDETLPPQALQIWPGGPRVLADWP-LHAALDYLH 214 Query: 211 NPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQ--FKKEIGIPINVEGKIA-- 262 +PR + + PA RL +ELLA Q++ L R+ ++ + + G A Sbjct: 215 HPRPEVSLAALQDRSHPAWLRLKAEELLAQQLSQLQARQAQALRRAPTLALGQRGGEAKG 274 Query: 263 --QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320 +++L +PF+ T +Q ++I +D+++ + M R+LQGDVGSGKT+VA +A A ++A Sbjct: 275 LHEQLLAVLPFALTGAQRRVSEEIARDLARPSPMHRLLQGDVGSGKTVVAALAAAVCIDA 334 Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI----AHGQA 376 G Q V+MAP ILA QH + + + + V + G RR+ LE I G A Sbjct: 335 GYQCVLMAPTEILASQHVKKLVDWLTPLGVRVAWLAGGQKTKERRETLEAIDRAPQEGGA 394 Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA--------------TAPH 422 +I+GTHA+ QD ++++KL L IVDEQHRFGV QRL L +K PH Sbjct: 395 QLIVGTHAVIQDKVRFHKLGLAIVDEQHRFGVAQRLALREKVMEGGDAVEGGAKQPVEPH 454 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 +L+M+ATPIPRTL ++ D+D+S + E P GR PI T +I R E+I R++ L+EG Sbjct: 455 MLMMSATPIPRTLAMSYYADLDVSTLDELPPGRSPIVTRVISEQRRPELIARIRAQLAEG 514 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI------------------------ 518 ++ YW+CP IEE + + + + H T+++ Sbjct: 515 RQVYWVCPLIEESEAVDLTNA----TATHAELTAALNDAPHAAPLPPEGASPALGRPGGG 570 Query: 519 -----AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 ++H R+ +K++VM F G LL++TTVIEVG+DV +A++++IE+AE FGL Sbjct: 571 GGIQIGLLHSRLPAAEKQAVMAEFVAGRMGLLVSTTVIEVGVDVPNATLMVIEHAERFGL 630 Query: 574 AQLHQLRGRVGRGEEISSCILLYH----PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629 +QLHQLRGRVGRG + S+C+LLY P L + + RL + T DGF IA DL+ R Sbjct: 631 SQLHQLRGRVGRGAQASACVLLYSTGDAPRLGQTARERLKAMAETNDGFEIARRDLEIRG 690 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 GE LG +QSG A LL+ AR+ A +L Q P L Sbjct: 691 PGEFLGARQSGAALLRFADLATDGELLDWARQTAALMLAQHPVLA 735 >gi|319892225|ref|YP_004149100.1| ATP-dependent DNA helicase RecG [Staphylococcus pseudintermedius HKU10-03] gi|317161921|gb|ADV05464.1| ATP-dependent DNA helicase RecG [Staphylococcus pseudintermedius HKU10-03] gi|323464678|gb|ADX76831.1| ATP-dependent DNA helicase RecG [Staphylococcus pseudintermedius ED99] Length = 681 Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 208/631 (32%), Positives = 342/631 (54%), Gaps = 19/631 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DL+ Y P+ + D ++ +E VT+ G + + R K+ ++ I Sbjct: 37 DLVLYLPTRYEDNTL-VDLTTAEDESHVTVRGEVYSTPTVAFFGRNRSKLTVHLMINGIA 95 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162 + + LKN + + GK + K I + D F VY + Sbjct: 96 VKAVFFNQPYLKNKIQLHETVVIKGKWSRRKQEINGQKMFFDLSQLADAQFT---PVYRV 152 Query: 163 PTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS 222 GL + +I + L + + EW+ + ++ ++ + + +H +AKD + Sbjct: 153 KEGLKQKTLRDMIQQTLQDITI-HEWLPASMREQYKLETLHDTIHALH---EAKDQQSLL 208 Query: 223 PARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281 AR A+ E ++ + L R + E I + + + + + +PF T+ Q+ ++ Sbjct: 209 RARRTFAFTEFFMFELRMQWLNRMEKMSEEAIEVQYDIQQVKTFIETLPFELTEGQKQSV 268 Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341 +I +D+ RM R+LQGDVGSGKT+VA I M A AG Q+ +M P ILA+QH E + Sbjct: 269 NEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYAMKTAGYQSALMVPTEILAEQHAESL 328 Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401 + + V ++TG++ R+ LER+A+G+ +IGTHAL QD + ++ + LVI D Sbjct: 329 VELF-GPYMNVALLTGSVKGKKRQLLLERLANGEIDCLIGTHALIQDDVAFHNVGLVITD 387 Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461 EQHRFGVQQR KL +K +VL MTATPIPRTL ++ G++D+S I P GRKPI+T Sbjct: 388 EQHRFGVQQRQKLREKGALSNVLFMTATPIPRTLAISVFGEMDVSSIKSLPKGRKPIETY 447 Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---- 517 + + +VIE ++ L +G++AY I P IE S V+ +L+E+ + Sbjct: 448 WVKHEQYAQVIEHMERELRQGRQAYVISPLIE---SSEHLEDVQNAIALYENLQVALPQR 504 Query: 518 -IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 I ++HG+MS +K+ VM + +L+ATTV+EVG++V +A+ ++I +A+ FGL+ L Sbjct: 505 RIGLLHGKMSADEKDDVMHRYSAHELDVLVATTVVEVGVNVPNATFMMIYDADRFGLSTL 564 Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636 HQLRGRVGR + S C+L+ P ++ R+ ++ T DGF ++E+DL+ R G+ G+ Sbjct: 565 HQLRGRVGRSDFQSYCVLIASPK-TETGIERMQIMTQTTDGFELSEKDLEMRGPGDFFGV 623 Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 KQSG+P FL+ +LE+AR +A ++ Sbjct: 624 KQSGLPDFLVGNLVEDYRMLEVARDEAAQLM 654 >gi|303234025|ref|ZP_07320674.1| ATP-dependent DNA helicase RecG [Finegoldia magna BVS033A4] gi|302494950|gb|EFL54707.1| ATP-dependent DNA helicase RecG [Finegoldia magna BVS033A4] Length = 678 Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 230/669 (34%), Positives = 358/669 (53%), Gaps = 32/669 (4%) Query: 13 LSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI-SEERI 69 LS +G+GKK L+ IIN DLL Y P + +R I + EE Sbjct: 3 LSEIKGIGKKKLEVLNSMGIININ--------DLLNYFPYRYENRSIIQNIIDTRDEENC 54 Query: 70 VTITGYISQHSSFQLQKRRPYKILLN-DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 V +IS+ + L++ + D T +I++ +F ++N + GK Sbjct: 55 VIKVKFISKPITKYLRRNLNLTTAIAFDDTSKISVSWF--NQPFIRNQILPNTTYYLYGK 112 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-----P 183 I++++N+ + P I + +I +Y + G++ + K + A+ Sbjct: 113 IQRVQNQFKISSP--ILSKTFGGKLGIIYPIYKVKKGITNNDMIKFVDFAIKHCIDEIKN 170 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 V+P + K+ I N I N K D+ AR L +E++ Q+A+ M Sbjct: 171 VIPYSMIKNY-------DIENKRNAIKNIHKPVDYAQFKRARTALVLEEVIIMQLAMKSM 223 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 + + I + I + ++ F TK Q AIKDI DM+ + RM R++QGDVG Sbjct: 224 KTSLNQTNYIKFQSDESI-NIFINSLKFELTKGQLEAIKDIEMDMTSEKRMNRLVQGDVG 282 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA A+ + +G Q+ MAP ILA QHYE + + I V ++ ++ ++ Sbjct: 283 SGKTIVAEAAIFKSHSSGYQSAFMAPTDILATQHYESLSEDFSKFGIKVCLLKSDLTKSE 342 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 + L+ I G +I+GTHA+ QD +++ +L LVI DEQHRFGV QR K++ K P V Sbjct: 343 KDLVLKGIKSGYFDVIVGTHAIIQDFVEFKRLGLVITDEQHRFGVGQRKKISDKGQNPDV 402 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L+MTATPIPRTL L+ GD+DIS I E P GRK I+T + + + + ++ + G Sbjct: 403 LVMTATPIPRTLALSYYGDLDISTINEMPKGRKIIETYSVGFSYEKRIADFIRKQVDNGF 462 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541 +AY +CP IEE + +V E +N L E+F+ ++ ++HG+M +KE M F +G Sbjct: 463 QAYIVCPLIEESESLELENVTELYNRLTGEYFSDINVGMLHGKMKSSEKEETMKDFVDGK 522 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 K+L++TTVIEVG++V A++I+I NAE FGL+QLHQLRGRVGR + S CIL+ + S Sbjct: 523 TKILVSTTVIEVGVNVRKANVIVIYNAERFGLSQLHQLRGRVGRSSDQSYCILINNAH-S 581 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 R++++ T GF ++++DL R G++LG +QSG+P IA E L+E A Sbjct: 582 DEQMERMNIMVKTNSGFELSQKDLMMRGSGDLLGTRQSGIPLLNIADLEKDYDLIEKAAV 641 Query: 662 DAKHILTQD 670 +I T D Sbjct: 642 ITDYIYTND 650 >gi|256004524|ref|ZP_05429503.1| ATP-dependent DNA helicase RecG [Clostridium thermocellum DSM 2360] gi|255991529|gb|EEU01632.1| ATP-dependent DNA helicase RecG [Clostridium thermocellum DSM 2360] Length = 689 Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 230/618 (37%), Positives = 343/618 (55%), Gaps = 23/618 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ--LQKRRPYKILLNDGTGE 100 DL+ + P + DR KI +++E T G I + + Q Y+ + D TG Sbjct: 37 DLITHFPYDYEDRSNIKKICQLTEGESCTFEGIIMSKVTERKIRQGLTLYQAYIKDDTG- 95 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD-VNFPLIEAV 159 T++ + +K V G GKI + + + +P Y ++ N I V Sbjct: 96 -TIIATWYNQPYIKKVLTVGESYIFYGKIVRGYKTLEVQNPVYEKACKEEHKNTMKIVPV 154 Query: 160 YSLPTGLSVDLFKKIIVEALSRLP-----VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 Y L+ + + ++ AL + VLP W+ K K I AF+ IH PR Sbjct: 155 YHATANLTQNTIRTVMQNALELVDGNLEDVLPLWVRK----KYCLCDINYAFSNIHFPRN 210 Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFK--KEIGIPINVEGKIAQKILRNIPFS 272 D + AR RL ++EL Q+ LL ++ KE GI K + +I F+ Sbjct: 211 DGDIK---NARYRLVFEELFLLQLGLLSVKTVLSDGKE-GIAFAPNRKEMVDFINSIGFT 266 Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332 T +Q+ ++I +DM M R++QGDVGSGKT+VA +A+A AV++G Q +M P I Sbjct: 267 LTNAQKRVWEEIEKDMESNRVMNRLVQGDVGSGKTIVAALALAKAVKSGYQGAMMVPTEI 326 Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392 LA+QHYE +K I V ++ G+ + R + L +I G+ +I+IGTHAL ++ +++ Sbjct: 327 LAKQHYESLKDIMGKHGINVALLVGSQTKKQRSEILSKIESGEVNIVIGTHALIEEKVKF 386 Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452 KL LVI DEQHRFGV+QR L+ K P +L+MTATPIPRTL L GD+DIS I E P Sbjct: 387 SKLGLVITDEQHRFGVRQRAMLSNKGINPDILVMTATPIPRTLALILYGDLDISIIDELP 446 Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL-H 511 GRKP+KT + + + +K + EG++AY ICP ++E E +S ++ + Sbjct: 447 PGRKPVKTYAVDNSMRQRINNFIKKQILEGRQAYIICPLVDESDEIEAKSALKTAEKIAK 506 Query: 512 EHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 E F + ++HG+M +KE VM F G +L++TTV+EVG++V +A+++++ENAE Sbjct: 507 EDFKDFRVGLLHGKMPAGEKEEVMQKFLKGEIDILVSTTVVEVGVNVPNATLMVVENAER 566 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630 FGLAQLHQLRGRVGRG S CI LY+ S+ + R+ V++ T DGF+I+E+DL R Sbjct: 567 FGLAQLHQLRGRVGRGPHQSYCI-LYNESKSQIAKERMKVMQETTDGFVISEKDLLIRGP 625 Query: 631 GEILGIKQSGMPKFLIAQ 648 GE G +Q G+P IA Sbjct: 626 GEFFGTRQHGLPDLKIAN 643 >gi|229822821|ref|ZP_04448891.1| hypothetical protein GCWU000282_00110 [Catonella morbi ATCC 51271] gi|229787634|gb|EEP23748.1| hypothetical protein GCWU000282_00110 [Catonella morbi ATCC 51271] Length = 678 Score = 338 bits (868), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 214/648 (33%), Positives = 363/648 (56%), Gaps = 22/648 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98 DL+F+ P F RP + + +E+ VT+ G + + F +K R +K+ +ND Sbjct: 33 DLMFHFPFRFESVAVRPLATILDQEK-VTLKGKVVTPPVVAYFGGKKSRVSFKLAVNDH- 90 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 EI ++ F+ + LK G++ + GK + + ++ + + QD Sbjct: 91 -EIIIVSFFNQP-YLKQAIQLGQERAIYGKWQSNRQTLLGMKLIQVAQEGQD-----FAP 143 Query: 159 VYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 VY GL I + ++ +PE + + L + + A +H P D Sbjct: 144 VYHATKGLKQSAIVTSIAASFNQYQEAIPEVLPQHLNDQYRLLDLPLALYAMHFP---AD 200 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 E A ++ Y E Q L KQ + E GI I+ + + + +P+ T++Q Sbjct: 201 QEQHHQATRKIIYQEFFLYQWRLQAALKQHETEPGIQIHYDNDQLKTWIGRLPYELTQAQ 260 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + + +I +D+ ++ M R++QGDVGSGKTLVA +A+ A++ G Q+ +MAP ILA+QH Sbjct: 261 KQVVNEICRDLMAQHPMRRMVQGDVGSGKTLVAFLAILASLSGGFQSALMAPTEILAKQH 320 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 + + + I ++T M ++ L+ +A+GQ ++IGTHAL Q+++++ +L L Sbjct: 321 AQSFNQLFASMGIEAALLTSAMTAKAKQAVLDGLANGQIQVVIGTHALIQETVKFKQLGL 380 Query: 398 VIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 VI+DEQHRFGV QR L K A ++L MTATPIPR+L +T G++ +S I + P GR Sbjct: 381 VIIDEQHRFGVGQRQALVDKNDKIAVNLLQMTATPIPRSLAMTLYGEMHVSTIDQLPKGR 440 Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHF 514 +PI T + ++++E+ + + L G + Y++ P IE + +V+E + L + F Sbjct: 441 QPITTRWLKEDQLEELEDHVAQELEAGHQVYYVLPLIESSEHLEQIENVLEVADRLADRF 500 Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 S + ++HG+++ ++E+VMD FK ++L+ATT++EVG+DV +A+I++I++AE FGL Sbjct: 501 PSFKVDVLHGQLNKEEQEAVMDRFKQNQVQILVATTMVEVGVDVPNATIMVIQSAERFGL 560 Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633 AQLHQLRGRVGR + S C L+ P ++ RL ++ + +DGFLI+ EDLK R G++ Sbjct: 561 AQLHQLRGRVGRSQLASYCYLIGSPS-TEQGKERLKIMVDHQDGFLISREDLKIRGMGDL 619 Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681 +G QSG+P+F A + +L +ARKD + +L L+ Q++ Sbjct: 620 MGRSQSGLPEFHYANLIEDEKILTVARKDVQDLLKHPERLSEAEWQAL 667 >gi|256372288|ref|YP_003110112.1| DEAD/DEAH box helicase domain protein [Acidimicrobium ferrooxidans DSM 10331] gi|256008872|gb|ACU54439.1| DEAD/DEAH box helicase domain protein [Acidimicrobium ferrooxidans DSM 10331] Length = 720 Score = 338 bits (868), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 229/666 (34%), Positives = 337/666 (50%), Gaps = 43/666 (6%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKI--LLNDGTGE 100 DL+ Y+P ++DR I++ V + G I+ +KR + L D TG Sbjct: 38 DLVTYYPRRYVDRTRHVMIADAVPGEEVVLIGRIASVRVVPTRKRSMTLVEARLVDETGS 97 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160 + L FF R+ K + I V GK++ + +V+P + D ++ +Y Sbjct: 98 VGLRFF-RQPWRAKQLGRLHGDIAVFGKVELFRKERQLVNP--LVDPIGDRTGRIV-PLY 153 Query: 161 SLPTGLSVD--LFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 L G +D ++ L R + E I + + EA IH P Sbjct: 154 PLRDGAGIDSGAIASAVLGLLERFSPIAETIPRAVRDALGLLGREEALRAIHAP---ATL 210 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQ-------FKKEIGIPINVEGKIAQKILRNIPF 271 E AR R+A++EL Q+ L L+R++ F ++ G+ ++L +PF Sbjct: 211 EQRLEARRRIAFEELFRIQVMLGLVRRERDAHQRGFAHDVAPFGPGTGRRVAELLARLPF 270 Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331 S T +Q + DI DM + M R+LQGDVG+GKTLVALIA A++ G QA ++AP Sbjct: 271 SLTAAQRRVVTDIAGDMQRDRPMHRLLQGDVGAGKTLVALIAALFAIQGGHQAALLAPTE 330 Query: 332 ILAQQHYEFIKKYTQNTQ----------------IIVEIITGNMPQAHRRKALERIAHGQ 375 +LA+QH+ I + I V ++TG + R +E +A G Sbjct: 331 VLAEQHFRTILSLLGTAREARERTPGLFDDEVAPIEVALLTGTVASKRRADIVEGLARGT 390 Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATP 430 +++GTHAL + + L LV+VDEQHRFGV+QR L + L+MTATP Sbjct: 391 IDLVVGTHALLTEGVNLASLGLVVVDEQHRFGVEQRSLLRDRHAEIAGRVADTLVMTATP 450 Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVII-PINRIDEVIERLKVVLSEGKKAYWIC 489 IPRT +T GD+D+S I E P GR PI+T + + E + L+ + G++ Y +C Sbjct: 451 IPRTAAMTVYGDLDLSVIDELPPGRTPIRTKWLRERSAYVEAFDYLRAEVGRGRQGYVVC 510 Query: 490 PQIEEKKESNFRSVVERFNSL--HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 +EE + RS E F L E + ++HGRM +K+ M +F+ G +L+A Sbjct: 511 ALVEESERLQARSAEEEFARLGNSELAGLRLGLLHGRMPAREKDRQMAAFRAGIIDVLVA 570 Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607 TTVIEVG+DV +A+++IIE+A+ FG+AQLHQLRGRVGRGE S+C LL + R Sbjct: 571 TTVIEVGVDVPNATVMIIEDADRFGIAQLHQLRGRVGRGEHASACFLLAETDQGPTA-AR 629 Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 L L+ T DGF +AE DL R EG +LG +QSG +A L+E AR A +L Sbjct: 630 LEALERTTDGFELAEVDLVLRGEGTVLGARQSGRSDLKLASVVRDRPLVEAARHHATRLL 689 Query: 668 TQDPDL 673 DP L Sbjct: 690 EVDPSL 695 >gi|297571644|ref|YP_003697418.1| DEAD/DEAH box helicase [Arcanobacterium haemolyticum DSM 20595] gi|296931991|gb|ADH92799.1| DEAD/DEAH box helicase domain protein [Arcanobacterium haemolyticum DSM 20595] Length = 741 Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 223/691 (32%), Positives = 352/691 (50%), Gaps = 61/691 (8%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY--KILLNDGTGE 100 DLL + P R I + E VT+ + SS + R + + ++DG + Sbjct: 48 DLLNHVPFRVARRGELLPIESVREGDSVTVVARVMDSSSRPMNNRAGFILNVTISDGAHD 107 Query: 101 ITLLFFYRKTEML---KNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVN---- 152 + L FF + L +N G T +G I + + R+ + HP Y + + +++ Sbjct: 108 LDLTFFAKHKRPLAYHENALCPGTIATFSGTISQYRGRLQLTHPEYEVVEDESEIDEAKI 167 Query: 153 ---FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNII 209 P+ A+ +P+ ++ ++ LS V P+ + + +K PS EAF+ + Sbjct: 168 ARPIPIYHAMAKVPS-WQIERAVGTVLGTLSPADV-PDLLPAEYREKYGLPSRFEAFHAV 225 Query: 210 HNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK--KEIGIPINVEGKIAQKILR 267 H P +D E S AR R A++E Q L + + P ++G +A + Sbjct: 226 HQP---QDVEEWSRARLRFAHEEAFVLQTVLAQRAAEVSTTQAPSCPPRLDG-VAAGLDA 281 Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 +PF+ T SQ I + +S M +LQGDVGSGKT+VAL AM V++G QAV++ Sbjct: 282 RLPFTLTDSQVEVGARISEALSGTLPMRCLLQGDVGSGKTIVALRAMLQVVDSGRQAVLL 341 Query: 328 APIGILAQQHYEFIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376 AP +LAQQH+ I + VE++TG++ A RR+ L +A G Sbjct: 342 APTEVLAQQHFSTISALLGELASAGELGAPSCATRVELLTGSLGMAQRRRTLAHLASGAP 401 Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436 I++GTHAL D +Q L LV+VDEQHRFGV QR +L A H+L+MTATPIPRT+ Sbjct: 402 LIVVGTHALLGDQVQLPSLGLVVVDEQHRFGVDQRDRLAHGA---HLLVMTATPIPRTVA 458 Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPI---NRIDEVIERLKVVLSEGKKAYWICPQIE 493 +T GD+D++ + + R + T ++P + V +R + + G + + +CP+I Sbjct: 459 MTVFGDLDVAVLGNRE--RSAMSTSVVPAFNDRWMARVWQRAREEIDSGGRVFVVCPRIS 516 Query: 494 EKKE------------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 K+ +N SV ER +L +I ++HG+MS DK +VM+ Sbjct: 517 AKEADDEAVLVDLPADLDQPEMANVESVSERLRNLPVFAGVAIGVVHGQMSAADKNAVMN 576 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS--CI 593 G L++ATTVIEVG+D+ DA++++I +AE FGL+QLHQLRGRVGRG + C+ Sbjct: 577 DMAAGRVHLVVATTVIEVGVDIPDATVMVIMDAERFGLSQLHQLRGRVGRGNKNKPGLCL 636 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 + + + R+ T DGF +AE D+ R G++LG QSG+ L + D Sbjct: 637 AVTNAAPGTLAAQRVDAFAGTTDGFALAEADVALRSVGDVLGASQSGIRSSLRFVSVVKD 696 Query: 654 SL-LEIARKDAKHILTQDPDLTSVRGQSIRI 683 L +E AR A+ ++ DP L + R ++ + Sbjct: 697 KLAIEQARAGARELVGSDPQLRNHRALAVAV 727 >gi|261749557|ref|YP_003257243.1| ATP-dependent DNA helicase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497650|gb|ACX84100.1| ATP-dependent DNA helicase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 705 Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 224/657 (34%), Positives = 362/657 (55%), Gaps = 35/657 (5%) Query: 43 DLLFYHPSSFIDRHYRPKISEI-----SEERIVTITGYIS--QHSSFQLQKRRPYKILLN 95 DLLF++P+ ++ ISE+ +E ++ ITG I+ + ++Q +KR+ L Sbjct: 35 DLLFFYPTKYVRYFILNNISELIKKNPTENTLIQITGKITHLEEINYQNKKRKILVAHLE 94 Query: 96 DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL 155 D TG + L++F + + + + ITV G+IK + +I ++HP + N+ Sbjct: 95 DETGYVELVWF-QTINFFRKIIKKNMTITVHGRIKHFQGKIQIIHPDIQKFQFSEKNYS- 152 Query: 156 IEAVYSLPTGLS---------VDLFKKIIVEALSRLP--VLPEWIEKDLLQKKSFPSIAE 204 I +YS+P L +++ K +I E+ + + L + ++K+L+Q+K E Sbjct: 153 IYPIYSIPKKLRENGINNSFMIEILKNLIEESKNDIEEIFLQDIMKKELMQRK------E 206 Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK 264 A IH P+ + + + R + L + R + P + GK Sbjct: 207 ALIQIHFPQSLEKL-FQAKYRLKFEELFFLKLFLLSKKNRNKSSSSNSYPFSRLGKNFYN 265 Query: 265 ILR-NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 + +PF T+ Q+ ++I D+ + +M R+LQGDVG GKT++A+ +M A++ G Q Sbjct: 266 FYKYCLPFPLTEEQKRVFREIRNDLKKPMQMNRLLQGDVGCGKTIIAVFSMLLALDNGFQ 325 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 + +M P +LA QHY IKK I + ++T + R+ + G+ I+IGTH Sbjct: 326 SCLMVPTEVLAIQHYSSIKKMFSGIGIQLALLTSSTSIQMRKCIYHDVFIGKISILIGTH 385 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVLLMTATPIPRTLVLTSLGD 442 L QD++ + L L I+DEQ RFGV+QR K+ +K PH+L+MTATPIPRTL +T D Sbjct: 386 TLIQDTVHFKNLGLAIIDEQQRFGVEQRAKILEKNERPPHILIMTATPIPRTLAMTLYND 445 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES---N 499 + IS I E P RKPIKTV +V+E +K + +G++ Y + P IE+ K++ N Sbjct: 446 LKISIIREFPINRKPIKTVHFRNKNRSKVLEIIKNQIQKGRQIYIVHPTIEKFKKNGSKN 505 Query: 500 FRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556 +++ + + E+F I I+HGRMS +K M+ F G ++++TTVIEVG+D Sbjct: 506 LMNLMRGYQLIKENFPKLKDRIGILHGRMSYQEKNIQMNRFLRGETLIMVSTTVIEVGVD 565 Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616 V +AS+I+IENA+ FGL+QLHQLRGRVGRG S C+L+ + +S S+ R+ ++ T+D Sbjct: 566 VPNASVILIENADCFGLSQLHQLRGRVGRGPHPSYCLLMTNEKISVESHFRMKIMCETKD 625 Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 G IA++DLK R G+++G KQSG F IA L++ AK ++PD Sbjct: 626 GLEIAKKDLKLRGSGDLIGTKQSGNAYFRIANLLKDYKLIKEVIPIAKKFFNKNPDF 682 >gi|325000473|ref|ZP_08121585.1| ATP-dependent DNA helicase RecG [Pseudonocardia sp. P1] Length = 721 Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 211/677 (31%), Positives = 350/677 (51%), Gaps = 59/677 (8%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY---KILLNDGTG 99 DLL ++P ++DR I+ + T+ +++ ++ RR ++ ++ G Sbjct: 32 DLLRHYPRRYVDRGRLTDIAGLVAGEHATVVAQVAKAELRDMRNRRGKMLKAVIRDEKGG 91 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159 E+ FF L+ G +GK+ R+ + HP + + D P + +V Sbjct: 92 ELDCTFF--NGWKLQGFVKAGAVGVFSGKVGVFNRRLQLTHPQFEEIDETDSLRPFL-SV 148 Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 Y ++ + + + L ++ + + L +++ + A IH P D Sbjct: 149 YPANAKVTSQAIARSVRQVLDQIDDPTDPLPDALREREQLTELGRALRRIHVPEAEADIH 208 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI--NVEGKIAQKILRNIPFSPTKSQ 277 AR RL +DE L Q+AL L R+Q P+ EG + ++PF T Q Sbjct: 209 ---AARHRLVWDEALGVQLALAL-RRQAAVARPAPVCPRTEGGLLAAFDADLPFPLTDGQ 264 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 E+ ++I D+ ++ M R++QGDVG+GKT+VAL AM V+AG QA ++AP +LA QH Sbjct: 265 EAVGEEIAADLGAEHPMNRLVQGDVGAGKTIVALRAMLQVVDAGKQAAMLAPTEVLAAQH 324 Query: 338 YEFIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 ++ + + ++TG+M RR+AL G A I++GTHAL Sbjct: 325 ARSLRGMLGALGRAGELDATDGATSITLLTGSMGVKARRQALLDAQSGAAGIVVGTHALI 384 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDI 445 QD++ + L LV+VDEQHRFGV+QR L + APH+L+MTATPIPRT+ +T GD+ + Sbjct: 385 QDTVGFADLGLVVVDEQHRFGVEQRDALRARGERAPHMLVMTATPIPRTVAMTVYGDLAV 444 Query: 446 SKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 S++ P GR P+ T ++P++ I+ V +R++ + G + Y +CP++ + ++ + Sbjct: 445 SELKGLPRGRSPVTTTVVPLSEHPGWIERVWQRIREEVERGHQCYVVCPRVGDTEKEDPE 504 Query: 502 S------------------------VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537 + E+ L I I+HG++ +K++VM +F Sbjct: 505 LEEPPPEEGESERRPPLAVLDIAPMITEKLGGLR------IGILHGKLPADEKDAVMRAF 558 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 + +L+ATTVIEVG+DV +A+ I++ +A+ FGL+QLHQLRGRVGRG C+L+ Sbjct: 559 ERAELDVLVATTVIEVGVDVPNATGIVLLDADRFGLSQLHQLRGRVGRGSAAGLCLLVTE 618 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL-HDSLL 656 P + + RL + T DGF +A DL+ R+EG++LG QSG L L H ++ Sbjct: 619 MPAATTARERLDAVAGTTDGFELARLDLELRREGDVLGASQSGSRSGLKLLSLLRHGDVI 678 Query: 657 EIARKDAKHILTQDPDL 673 A+ A+ ++ +DPDL Sbjct: 679 AKAQLYARDLVDRDPDL 695 >gi|300870577|ref|YP_003785448.1| ATP-dependent DNA helicase RecG [Brachyspira pilosicoli 95/1000] gi|300688276|gb|ADK30947.1| ATP-dependent DNA helicase, RecG [Brachyspira pilosicoli 95/1000] Length = 690 Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 233/671 (34%), Positives = 351/671 (52%), Gaps = 38/671 (5%) Query: 17 RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76 +GVG KY+ L+K N DL+ + P ++ DR KI+E + Y+ Sbjct: 17 KGVGPKYAETLAK------KNIFTLYDLITFFPRTYDDRRNTLKINEALKNPDKNSVVYV 70 Query: 77 S--QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK-IKKLK 133 SF Q R+ I++ DG ITL + +G K+ +TGK ++ ++ Sbjct: 71 EVIDVGSFTFQFRKKPLIIVTDG---ITLCEVPIYGGRVPAGATKGAKLYLTGKFVRNMR 127 Query: 134 NRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-----LPEW 188 ++ + +S +++ I +Y L GLS + +IV L R +P+ Sbjct: 128 GKVQCRFVEFEKPSSNSLSYGKIVPIYPLTEGLSQKKLRTLIVSELERFEKNMQYDIPKV 187 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248 I+K K SI E +H P FE ARE L ++E L Q L R+ Sbjct: 188 IKKKYRLKSFVSSIME----MHFP---TSFEALEEARESLVFEEFLTFQYIHLSERRP-- 238 Query: 249 KEIGIPINVE----GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 I I E + +++ ++ F+ T Q +AI++I +DM ++ R+LQGDVG+ Sbjct: 239 ---NILIKEERYNSSNLLERVKLSLGFNLTDDQNNAIEEIKKDMFSNRQLFRLLQGDVGA 295 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ----IIVEIITGNMP 360 GKT+VA + E+ Q +AP ILA QHY KK +N I ++I+T ++ Sbjct: 296 GKTIVAFLTALIPTESNFQTAFLAPTEILALQHYYTFKKIIKNANLEDVIKIDILTSSVS 355 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 Q R L+R+ G+ HI++GTH++ D + + L IVDEQ RFGV QR KL K Sbjct: 356 QNERAYTLKRLREGKTHILVGTHSILYDEVVFKNLAYAIVDEQQRFGVNQRNKLLSKGNN 415 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 LLMTATPIP++L LT G++D+S I P GRK + T + D + LK ++ Sbjct: 416 VDYLLMTATPIPQSLALTLFGELDLSIIKSMPKGRKGVLTKYKELYERDHCYKFLKSRIA 475 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539 +G++ Y + P IE S E + +F + +I IIHG+M D +KE +M+ F N Sbjct: 476 KGEQGYVVFPFIENDDSSIITLSSEFERAKQTYFENINIEIIHGKMKDEEKEYIMNRFSN 535 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G K+L +TTVIEVGID +A+ I+IE AE FGL+QLHQLRGRVGRG+++ C L+ H Sbjct: 536 GEIKVLFSTTVIEVGIDNPNATTILIEGAERFGLSQLHQLRGRVGRGDKLGYCYLILHSE 595 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 L+ R++V+ T DGF IAE+DL+ R GE LG KQSG+ F + ++ A Sbjct: 596 LNDIIKERINVICETTDGFKIAEKDLELRGAGEFLGDKQSGIADFKLGNIVKDAEIMRKA 655 Query: 660 RKDAKHILTQD 670 + + + +L D Sbjct: 656 KDEMRELLKID 666 >gi|306820931|ref|ZP_07454551.1| DNA helicase RecG [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551045|gb|EFM39016.1| DNA helicase RecG [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 671 Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 229/650 (35%), Positives = 354/650 (54%), Gaps = 21/650 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ-KRRPYKILLNDGTGEI 101 DLL Y P + DR KISEI V + I ++ + K+ I + D TG Sbjct: 31 DLLNYFPRKYEDRRIFKKISEIKVRDKVCVHAKIIRYEKVMYKFKKSIINIYVQDDTGTA 90 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161 + F + +GR+I G + + I+ + I +S+ LI +Y Sbjct: 91 CIKLF--NNNFILPDLEKGREIFFYG-LSEENIDILQFNSPEIEFDSKGKKTGLIYPLYP 147 Query: 162 LPTGLSVDLFKKIIVEALSRLPVLP-EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220 L GL I+ A+ + E +++D+ ++ S EA IH P KD E Sbjct: 148 LTKGLRNSEIINIVKYAIENTNLSDLEILDEDIRKRYRLLSSDEAIKNIHFP---KDIEI 204 Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA-QKILRNIPFSPTKSQES 279 +R R ++E I L +K ++ GI +I I+ +PF+ T SQ Sbjct: 205 LKQSRYRCIFNEFFDLNIFLGNYKKNVVEKKGITFK---RIDLSSIINKLPFTLTSSQNK 261 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 + DI+ DMS++ M R++QGDVGSGKT++A ++M + G Q+ +M P +LA QHYE Sbjct: 262 VLDDIMSDMSRQTPMRRLIQGDVGSGKTVLAFLSMYNCAKNGYQSALMVPTEVLAIQHYE 321 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 + I VE++T ++ + K ++I + + ++IGT AL Q+ +Q+ L L+I Sbjct: 322 SALNFFDGEDIRVELLTKSVKS--KEKIYQKIKNREVDVVIGTQALIQEKVQFSNLGLII 379 Query: 400 VDEQHRFGVQQRLKLTQKATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 DEQHRFGV QR +L QK+ P V++M+ATPIPRTL L D+DIS I E P R I Sbjct: 380 TDEQHRFGVNQRKELEQKSEEPADVIVMSATPIPRTLSLVIHKDLDISVIDELPKNRVSI 439 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS- 517 KT+ ++V + ++ + G++AY +CP +EE ++ + SV E + F Sbjct: 440 KTIAENKRNENKVFDFIQKQIRLGRQAYIVCPLVEENEDMDLISVDELHKKIQTIFDDDL 499 Query: 518 -IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 IA +HG+M +KE ++ F LLI+TTVIEVGI+V +ASI++I +A+ FGL+QL Sbjct: 500 KIAKLHGKMKSSEKEELLKEFMENRINLLISTTVIEVGINVPNASIMVIYDAQRFGLSQL 559 Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636 HQLRGRVGRG++ S C+LLY S + R+ + ++ DGF IA +DL+ R GEI GI Sbjct: 560 HQLRGRVGRGDKQSYCVLLYENA-SAITMERIKTIVSSNDGFEIARKDLELRGAGEIFGI 618 Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686 KQ G+P+F +A + +LE+++K A+ +L L + ++IR+ LY Sbjct: 619 KQHGLPEFHLADIIKNADILELSQKCAQEVLNT---LDDEKIKTIRLRLY 665 >gi|297626613|ref|YP_003688376.1| ATP-dependent DNA helicase RecG [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922378|emb|CBL56950.1| ATP-dependent DNA helicase RecG [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 735 Score = 338 bits (866), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 207/646 (32%), Positives = 347/646 (53%), Gaps = 55/646 (8%) Query: 43 DLLFYHPSSFIDRHYRPKI-SEISEERIVTITGYISQHSS-FQLQKRRPYKI--LLNDGT 98 DL+ Y P ++ R + + + +ER + S S+ F+ RR Y++ L DG Sbjct: 39 DLMHYTPRDYLSGTQRTDLRTLVPDERAAVVAEVASLSSAPFRGDPRR-YRLEARLTDGR 97 Query: 99 GEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS-------- 148 G + L+FF +K + + G + GKI + +++ M HP ++ ++ Sbjct: 98 GFLNLIFFGKKYLVDYWQRQLSMGERGIFVGKIGEFNDQLQMTHPDFVMLDAAGRIVGAA 157 Query: 149 --------QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP 200 Q V I +Y L + + L L + +++ L++++ Sbjct: 158 DEKRALMAQVVTKSDIIGIYPARATLPTWQIAECVAMGLDMLAGIVDFLPPSLVREEGLV 217 Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG-IPINVEG 259 + EAF+++H PR D + +RL +DE L Q+ + RK+ + + + G Sbjct: 218 GLWEAFDLVHRPRVPDD---VARGLKRLKFDEALGLQLLMAYRRKESSRHRAPVITHRSG 274 Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319 + +PF+ T+ Q + +I DMS M R++QG+VGSGKT+VAL AM AAV+ Sbjct: 275 GLLDAFDAALPFTLTRGQRAVGDEIAADMSGSVPMARLVQGEVGSGKTVVALRAMLAAVD 334 Query: 320 AGGQAVIMAPIGILAQQHYEFIKKY-------------TQNTQIIVEIITGNMPQAHRRK 366 AG QAV++AP +LA QH I+K T ++ ++TG + A R++ Sbjct: 335 AGHQAVLLAPTEVLAGQHEGSIRKLLGPLAAAGTLDAPEHATHLV--LLTGAVTGAARKQ 392 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLL 425 AL I+ GQA +++GTHAL +++ + + L++VDEQHRFGV+QR L + PH L+ Sbjct: 393 ALAAISSGQAGLVVGTHALLSEAVHFSDIGLIVVDEQHRFGVEQRAVLADQGDHRPHQLV 452 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSE 481 +TATPIPR++ +T GD+++S ++E P GR ++T + + + V +R+ + Sbjct: 453 LTATPIPRSVAMTVFGDLELSTLSELPQGRAGVQTTAVLTAQHPTWLARVWQRVLEEVQS 512 Query: 482 GKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534 G++A+ +CP++ + + + V ER S HE + ++HGRMS DKES M Sbjct: 513 GRQAFVVCPRVSQTDGGKSAEPVAAAQEVFERLGS-HELKGLRLGLLHGRMSGADKESAM 571 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 +F G +L+ TTVIEVG+DV +AS +++ +A+ +G++QLHQLRGR+GRG C+ Sbjct: 572 AAFAAGQTDVLVTTTVIEVGVDVPNASAMVVLDADRYGVSQLHQLRGRIGRGSFPGICLF 631 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 + + RL + T DGF +AE DL+QR+EG++LG +Q+G Sbjct: 632 VSGVDPRTPAAQRLQQVAQTNDGFAVAELDLEQRREGDVLGAEQAG 677 >gi|226365976|ref|YP_002783759.1| ATP-dependent DNA helicase RecG [Rhodococcus opacus B4] gi|226244466|dbj|BAH54814.1| ATP-dependent DNA helicase RecG [Rhodococcus opacus B4] Length = 752 Score = 338 bits (866), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 231/723 (31%), Positives = 374/723 (51%), Gaps = 90/723 (12%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99 DLL ++P + + + E +TI ++ + ++ K RP K++L+ T Sbjct: 31 DLLRHYPHRYASQGRELAEKDPPEGEHITIIARVTSAAVVKM-KNRPGSMLKVVLSTDTQ 89 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF-----HNSQD--VN 152 + + FF + +K+V G + +G +K + + + HP Y+ S+D VN Sbjct: 90 NVDVTFF--SPQKVKHVIKPGVRAMFSGTVKYFRQKWSLTHPSYLILPEPRAGSEDPVVN 147 Query: 153 FPLIEAVYSLP----------TGLSVDLFKKI----------------------IVEALS 180 I L G+ + +F + I++ L Sbjct: 148 VGRIRGAGDLAGIARASQEPGAGVDMSVFDRALIPLYPATRDVESWTIMKCVRQILDQLD 207 Query: 181 RLP-VLPEWI--EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237 R+ LPE I E+DL+ + EA +H P +D E A +RL +DE A Q Sbjct: 208 RVDDPLPEKIRAERDLI------GLDEALRSVHLPDIREDVE---NAHDRLRFDEATALQ 258 Query: 238 IALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 + L R + + V G IA +PF T Q + +I D+++ + M R Sbjct: 259 LVLARRRHDNAERVAPACPPVPGGIADVFESMLPFQLTDGQHAVADEISADLARPHPMSR 318 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------T 345 +LQG+VGSGKT+VAL AM V+AG Q ++AP +LA QH ++ Sbjct: 319 LLQGEVGSGKTIVALRAMLQVVDAGYQCALLAPTEVLATQHARSLRAMLGSLATAGELGA 378 Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405 V ++TG+M A +R A+ G A I+IGTHAL QD+++++ L +VIVDEQHR Sbjct: 379 HEKATRVALLTGSMGVAAKRTAMNEAITGDAGIVIGTHALIQDNVEFFNLGMVIVDEQHR 438 Query: 406 FGVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462 FGV+QR +L +A +PH+L+MTATPIPRT+ +T LGD+++S + + P GR PIK+ + Sbjct: 439 FGVEQRDRLRSRAREGLSPHLLVMTATPIPRTIAMTVLGDLEVSTLRQLPKGRSPIKSSV 498 Query: 463 IPINR----IDEVIERLKVVLSEGKKAYWICPQIEE-----------KKESNFRSVVERF 507 +P ++ + ER++ +++G++AY +C +I + +K +S V+ F Sbjct: 499 VPASQKPQWVARAWERIREDVADGRQAYVVCSRIGDGEKGDGEDALDEKAPETKSAVDVF 558 Query: 508 NSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L + + ++HGR+ +K++VM F G +L+ TTV+EVG+DV +A+I++I Sbjct: 559 DELSGDIMADLRVGLLHGRLPADEKDAVMRDFTAGDIDVLVCTTVVEVGVDVPNATIMVI 618 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625 +A+ FG++QLHQLRGRVGRG+ CIL+ +Y RLS + +T DGF +A+ DL Sbjct: 619 VDADRFGVSQLHQLRGRVGRGKHQGLCILVTEMNPGGPAYERLSNVASTNDGFELAQLDL 678 Query: 626 KQRKEGEILGIKQSGMPKFLIAQPEL-HDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684 R+EG+ILG QSG L L H+ ++ A + A+ ++ DP L + G S + Sbjct: 679 ATRREGDILGAAQSGTTSTLRLLSLLGHEEVIAAASEFARAVIADDPRLENHPGLSAMVT 738 Query: 685 LYL 687 L Sbjct: 739 SAL 741 >gi|269794445|ref|YP_003313900.1| ATP-dependent DNA helicase RecG [Sanguibacter keddieii DSM 10542] gi|269096630|gb|ACZ21066.1| ATP-dependent DNA helicase RecG [Sanguibacter keddieii DSM 10542] Length = 758 Score = 338 bits (866), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 230/706 (32%), Positives = 359/706 (50%), Gaps = 78/706 (11%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP--YKILLNDGTGE 100 DLL ++P + D ++S + VT+ + + +++ R + +++DGT Sbjct: 35 DLLRHYPRRYADPGAMSQLSTLVVGEHVTVMAQVVSATVREMRSRGGAMLQAVVSDGTDR 94 Query: 101 ITLLFFYRKTEMLK---NVFFEGRKITVTGKIKKLKNRIIMVHPHYIF-----HNSQDVN 152 ++L FF + L+ + GR TG + + +N + HP Y+ N D Sbjct: 95 LSLTFFAKHPGALRTHESRLKPGRAGLFTGVVSEYRNERQLTHPDYLLPGVDVENEVDAL 154 Query: 153 FPLIEAVYSLPTGLSVDLFK--KIIVEALSRLPV--LPEWIEKDLLQKKSFPSIAEAFNI 208 + + P S +K K + + L L V L + + D+L +++ + +AF Sbjct: 155 LEVSRLMPIYPATASFASWKIHKCVRQVLDPLHVDDLADPVPADVLGRRNLVPLVQAFRD 214 Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK-EIGIPINVEGKIAQKILR 267 IH P + EW ++RL Y+E Q AL L R + E VE ILR Sbjct: 215 IHLPES--ESEWHR-GQKRLRYEEAFVLQTALALRRSEAAALEATSRTLVED--GPSILR 269 Query: 268 N----IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 + +PF+ T Q +I +++ + M R+LQG+VGSGKT+VAL AM V+AGGQ Sbjct: 270 DFDAALPFTLTTGQREVGDEIAAELAAPHPMQRLLQGEVGSGKTVVALRAMLQVVDAGGQ 329 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQII-----------VEIITGNMPQAHRRKALERIA 372 A ++AP +LA QH + + V ++TG+ P A ++K L A Sbjct: 330 AALLAPTEVLAAQHARTLAALLGDLAAGGMLGGAAHGTRVALVTGSQPAAVKKKNLLDAA 389 Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPI 431 G A I++GTHAL +Q+ +L LV+VDEQHRFGV+QR L KA T PH+L+MTATPI Sbjct: 390 SGAAGIVVGTHALLSAGVQFAELGLVVVDEQHRFGVEQRDLLRAKARTVPHLLVMTATPI 449 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWI 488 PRT+ +T GD++ S + E PAGR I T ++P + + +++ + G++AY + Sbjct: 450 PRTVAMTVFGDLETSTLREIPAGRSGITTYVVPAQKPAWVSRTWAKVREEIDAGRQAYVV 509 Query: 489 CPQIEEKKESN-----------------------------------FRSVVE---RFNSL 510 CP+I S R+V+E +L Sbjct: 510 CPRITGDDSSEDDATPALDPAALAGTDEDRDNPGGPAASAARSRTPLRAVLEVAAELAAL 569 Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 I I+HG+M +KE+ M +F G LL++TTVIEVG+DV A+ +++ +A+ Sbjct: 570 EVFRGVRIGILHGQMPQAEKEAAMAAFTAGEVDLLVSTTVIEVGVDVPRATAMVVLDADR 629 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630 FGL+QLHQLRGRVGRG + C L+ ++ + TRL+ L +T DGF +A DL+ R E Sbjct: 630 FGLSQLHQLRGRVGRGADAGICFLVSEMADAEPAKTRLTTLASTTDGFELAAADLEMRSE 689 Query: 631 GEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTS 675 G++LG QSG L + D+ ++E AR+DA ++ DP L + Sbjct: 690 GDVLGAAQSGRSTSLQLLRVVRDTAVIEQAREDAAAVVAVDPTLVT 735 >gi|254739526|ref|ZP_05197223.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. Kruger B] Length = 432 Score = 338 bits (866), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 171/396 (43%), Positives = 265/396 (66%), Gaps = 5/396 (1%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T +Q + +I++DM+ RM R+LQGDVGSGKT+VA I + AA A Q +M P Sbjct: 5 FPLTGAQRRVVDEIMKDMTSPYRMNRLLQGDVGSGKTVVAAIGLYAAKLAHYQGALMVPT 64 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 ILA+QHY+ + + + + VE++T ++ RR+ L ++ G+ I++GTHAL QD + Sbjct: 65 EILAEQHYQSLAETFSHFGMKVELLTSSVKGVRRREILAKLEQGEIDILVGTHALIQDEV 124 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 +++L LVI DEQHRFGV QR L +K +P VL MTATPIPRTL +T+ G++D+S I E Sbjct: 125 IFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMTATPIPRTLAITAFGEMDVSIIDE 184 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 PAGRK I+T + +D V+ ++ +++G++AY ICP IEE ++ + ++ ++ + L Sbjct: 185 MPAGRKVIETYWAKHDMLDRVLGFVEKEINKGRQAYVICPLIEESEKLDVQNAIDLHSML 244 Query: 511 HEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 H+ + ++HGR+S +KE +M F ++L++TTV+EVG++V +A++++I +A Sbjct: 245 THHYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDA 304 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628 E FGL+QLHQLRGRVGRG E S C+L+ P S+ R+ ++ T DGF+++E+DL+ R Sbjct: 305 ERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGKERMRIMTETNDGFVLSEKDLELR 363 Query: 629 KEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDA 663 G+ G KQSG+P+F +A +HD LE AR+DA Sbjct: 364 GPGDFFGSKQSGLPEFKVADM-VHDYRALETARQDA 398 >gi|317125440|ref|YP_004099552.1| ATP-dependent DNA helicase RecG [Intrasporangium calvum DSM 43043] gi|315589528|gb|ADU48825.1| ATP-dependent DNA helicase RecG [Intrasporangium calvum DSM 43043] Length = 755 Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 232/708 (32%), Positives = 361/708 (50%), Gaps = 100/708 (14%) Query: 52 FIDRHYRP--KISEISEERI---VTITGYISQHSSFQLQKRRP--YKILLNDGTG-EITL 103 + R Y P +++++S RI V I ++ ++ ++ RR + L D G ++ + Sbjct: 37 LVPRKYLPPNELTDLSRLRIGENVLIIAEVAAATTRPMRNRRGKLLNVTLADEAGHQLDV 96 Query: 104 LFFYRKTEMLKNVFFEGRKIT------VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-- 155 FF N + RK++ G+I R+ + HP Y + +D + Sbjct: 97 TFF--------NAYGHERKLSPGVRGFFVGQIGTYGRRLQLTHPDYELIDDEDAAGEIEY 148 Query: 156 ----IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHN 211 VYS L+ +K++ +AL + L E + +++ ++S P AEA ++H Sbjct: 149 YRTHWVPVYSTTGKLNAFRMRKLVHQALDTVDHLREPLPEEVRARRSLPGRAEALELVHR 208 Query: 212 PRKAKDFEWTSPAR--ERLAYDELLAGQIALLLMRKQFKKEIGIPINVE-GKIAQKILRN 268 P + P R RL YDE Q L RK + +G P G + Sbjct: 209 PPLTE-----RPDRGIRRLKYDEAFVLQSILAQRRKASEALVGTPRRPRPGGLLAAFDER 263 Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 +PF T+ Q + +L+++ ++ M R+LQG+VGSGKT+VAL AM AAV+AGGQA ++A Sbjct: 264 LPFELTEGQRLVGEVLLEELGRERPMHRLLQGEVGSGKTVVALRAMLAAVDAGGQAAMLA 323 Query: 329 PIGILAQQHYEFIKKYTQNTQI-----------IVEIITGNMPQAHRRKALERIAHGQAH 377 P +LA QH+ I + + + V ++TG+ A RR AL A G A Sbjct: 324 PTEVLAAQHHRSISEMLGDLAMGGMLGGSDRGTKVALLTGSQSTAARRSALLDAASGAAG 383 Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLLMTATPIPRTLV 436 I+IGTHAL Q +Q+ L LV+VDEQHRFGV+QR L +K A PHVL+MTATPIPRT+ Sbjct: 384 IVIGTHALIQKHVQFADLALVVVDEQHRFGVEQRDALREKGAAPPHVLVMTATPIPRTVA 443 Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQI- 492 +T GD++ S + E P GR PI T ++ +R + ER+ +++G +AY +CP+I Sbjct: 444 MTVFGDMETSTLRELPRGRSPIATHVVKADRAGWMQRTWERVAEEVAKGHQAYVVCPRIG 503 Query: 493 ------------EEKKESNFRSVVERFNSLHEHFTSS----------------------- 517 E+ +++ V E SS Sbjct: 504 DPDPGSRLSSDSSEEDAADWEPVDWAEVDWSEDAWSSEEEPAPPPAPELTGVYAMWHELR 563 Query: 518 ---------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 A++HGR+ +KE+ M +F G +L+ATTVIEVG+DV +AS++++ +A Sbjct: 564 AKPELAGVRTAVLHGRLETDEKEATMRAFAAGEIDVLVATTVIEVGVDVPNASVMVVVDA 623 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628 + FG++QLHQLRGRVGRG C+L+ P + + RL ++ T DGF +A DL R Sbjct: 624 DRFGISQLHQLRGRVGRGSVPGLCLLVTTDP-GERAVERLDLVAGTTDGFELARADLHFR 682 Query: 629 KEGEILGIKQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 +EG++LG +QSG + L + ++ AR+DA ++ DPDL Sbjct: 683 REGDVLGARQSGRSGSIRHLRLTRAEDEQIIADAREDAFALIDTDPDL 730 >gi|195953636|ref|YP_002121926.1| ATP-dependent DNA helicase RecG [Hydrogenobaculum sp. Y04AAS1] gi|195933248|gb|ACG57948.1| DEAD/DEAH box helicase domain protein [Hydrogenobaculum sp. Y04AAS1] Length = 798 Score = 337 bits (865), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 234/675 (34%), Positives = 370/675 (54%), Gaps = 57/675 (8%) Query: 29 KIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRR 88 KI++ N ID+L+Y P ++ +R IS ++ + T+ I ++ + +++ Sbjct: 110 KILHASGLN--TLIDVLWYFPYTYENRLVLKSISSLALDSYGTVLVKI-ENLIYDEKEKF 166 Query: 89 PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS 148 P+ I+ DG ++ L F K + + + +G+ I V G +K+ + + M+HP +S Sbjct: 167 PFSIIAADGKSKLVLKF-RAKDKSVMGWYQKGQNIVVYGMLKEFRGQKYMIHPKIFSESS 225 Query: 149 QDVNFPLIEAVYSL-----PTGL---SVDLFKKIIVEALSRL------------PVLPEW 188 ++++ +I+ VY L P + S +K++ ++ + +LPE Sbjct: 226 KEID--IIKPVYPLERFEDPQSILASSSQKRRKLLESSIKSILNYYKDYWQNLQDILPE- 282 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMR 244 + L+ ++ AF IIH KDF S A++R Y+E+ ++A+L R Sbjct: 283 ---EFLKDNDLIPLSTAFKIIHAEDYFKDFRSFESMLSKAKKRFLYEEIFIFELAML-KR 338 Query: 245 KQFKKEIGIP-INVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 + K + P IN + + I +++ +I F T +Q+ AI +I+ DM M R+LQGDV Sbjct: 339 RSLVKSLNAPSINADPESIIKEVQSHISFPLTNAQKRAITEIINDMRSTKPMSRLLQGDV 398 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 GSGKTLV + + A ++ G QA +M P ILA QHY+ + V ++T + + Sbjct: 399 GSGKTLVGISSALAVLKDGFQAAVMVPTEILANQHYKNFHDFFSKLGYRVGLLTSSTSKT 458 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--A 420 K I+ G+ +I+IGTHAL Q+ +++ L IVDEQHRFGV QR L +K Sbjct: 459 DIHKL---ISIGEINIVIGTHALVQEKVKFKNLGFAIVDEQHRFGVAQRQILLEKNNNLM 515 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT-VIIPINRIDE--VIERLKV 477 PH+L M+ATPIPRT+ + GD+DIS + E PA RKP+KT V+ N+ D +IE +K Sbjct: 516 PHMLYMSATPIPRTIAMGIFGDLDISVLDEMPAMRKPVKTSVLYSDNQKDMAFLIEHIKK 575 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 LS G K Y + P IEE ++ + ++ + F + ++HGRMSD +K VM+ Sbjct: 576 ELSNGNKVYIVYPLIEESEKLDLKAAQTEYEKWKNIFKDYKVLLLHGRMSDKEKSKVMEE 635 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 FK + +L++TTVIEVGIDV +AS I+IE+A FGL+QLHQLRGRVGRG++ C LL Sbjct: 636 FKE-SGHILVSTTVIEVGIDVKEASTIVIEDAYRFGLSQLHQLRGRVGRGDKEGYCFLLV 694 Query: 597 HPPLSKN--------SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA- 647 + K+ + RL ++ T +GF I+ EDLK R G++LG+ QSG F A Sbjct: 695 NSSFVKSQKLTEQNATLQRLRIMVKTRNGFEISLEDLKLRGPGDVLGLSQSGYFGFNFAN 754 Query: 648 -QPELHDSLLEIARK 661 + E H L+ R+ Sbjct: 755 LKNEEHLRLMSTIRE 769 >gi|319796409|ref|YP_004158049.1| ATP-dependent DNA helicase recg [Variovorax paradoxus EPS] gi|315598872|gb|ADU39938.1| ATP-dependent DNA helicase RecG [Variovorax paradoxus EPS] Length = 708 Score = 337 bits (865), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 226/659 (34%), Positives = 360/659 (54%), Gaps = 32/659 (4%) Query: 40 RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99 R ID Y P + D K+++ + + + G +++ + RR ++DG+ Sbjct: 41 RDIDFALYLPMRYEDETRIVKLADTRDGDMAQVEGVVTE-CEVVYRPRRQLIATIDDGSD 99 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKK-LKNRIIMVHPHYIFHNSQDVNFP-LIE 157 L FF K + G ++ V G+++ R IM HP + + P + Sbjct: 100 TCQLRFFNFYPSQQKQLAV-GARVRVRGEMRGGFVGRQIM-HPTV---KAAGTSLPEALT 154 Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK--- 214 VYS GL+ + ++ + L+R VL E I + ++ + + +H P Sbjct: 155 PVYSTVAGLAQPVLRREVRSGLARA-VLDETIPVQIGLGGAW-DLRSSLTFLHYPTPDVA 212 Query: 215 -AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG-----IPINVEGKIAQKILRN 268 A + + PA +R+ +ELLA Q++ L R + + P V + ++L Sbjct: 213 MATLEDHSHPAWQRIKAEELLAQQLSQLQARMERAAQRAPVLPSSPEPVATSLHAQLLAV 272 Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 +PF T +Q+ ++I +D+ ++ M R+LQGDVGSGKT+VA +A A A++AG Q +MA Sbjct: 273 LPFGLTGAQQRVGEEITRDLGREIPMHRLLQGDVGSGKTVVAALAAARAIDAGFQCALMA 332 Query: 329 PIGILAQQHYE----FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384 P ILA QH+ ++ + V +TG+ + R + G+A ++IGTHA Sbjct: 333 PTEILAAQHFGKLVGWLDPLLAERGLRVAWLTGSQKKKERDAMSAAVESGEAALVIGTHA 392 Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLG 441 + + +++ L L I+DEQHRFGV QRL L KA PH+L+M+ATPIPRTL ++ Sbjct: 393 VISEKVRFKNLALAIIDEQHRFGVAQRLALRGKAVGHLEPHLLMMSATPIPRTLAMSYYA 452 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D+D+S + E P GR PI T ++ +R DEVI+R++ +++G++ YW+CP IEE + + R Sbjct: 453 DLDVSTLDELPPGRTPIVTKLVADHRRDEVIDRIQAQIAQGRQVYWVCPLIEESEAVDLR 512 Query: 502 SVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + E + L ++ ++H RM +K++VM +F ++L++TTVIEVG+DV + Sbjct: 513 NATETRDELAGTLGEAVHVGLLHSRMPTAEKQAVMAAFTANEIQVLVSTTVIEVGVDVPN 572 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP----LSKNSYTRLSVLKNTE 615 AS+++IE+AE FGL+QLHQLRGRVGRG S+C+LLY P + + + RL + T Sbjct: 573 ASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYAPGDSGRVGEAARARLKAMAETG 632 Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 DGF IA DL+ R GE LG +QSG P A LL+ AR+ A +L + PDL Sbjct: 633 DGFEIARRDLEIRGPGEFLGARQSGAPLLRFADLTTDTLLLDWARELAPVMLEKHPDLA 691 >gi|330466258|ref|YP_004404001.1| ATP-dependent DNA helicase RecG [Verrucosispora maris AB-18-032] gi|328809229|gb|AEB43401.1| ATP-dependent DNA helicase RecG [Verrucosispora maris AB-18-032] Length = 734 Score = 337 bits (865), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 224/707 (31%), Positives = 364/707 (51%), Gaps = 63/707 (8%) Query: 19 VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78 VG+K + L+ ++ A DL+++ P + +R I + VT+ + + Sbjct: 16 VGEKTAKALAGHLDLHTAG-----DLMYHFPRRYDERGEHTDIRALDVGEQVTVLAQVQR 70 Query: 79 HSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 + +++RR ++ + DG+G L F+ + GR GK+ + + Sbjct: 71 TAVRPMRQRRGNLLEVTVGDGSGGTLTLTFFGNQAWRERELRPGRWGLFAGKVTDFRGKR 130 Query: 137 IMVHPHYIFHNSQDVN---------------FPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + P Y+ + P+ A ++PT + + ++ Sbjct: 131 QLNGPEYVLLGDRTDGEAAATEQIEEFAGALIPVYPAAAAVPTWVIARCVRVVLDTVAPP 190 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 LP D+ ++ + A IH P ++ AR RL +DE A Q+ L+ Sbjct: 191 EDPLP----ADVRASRNLVGLGGALREIHRPSSREEL---YRARRRLKWDEAFAVQLTLV 243 Query: 242 LMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 + Q G + +P+ T Q +I D+++++ M R+LQG Sbjct: 244 RRKHQAAASPARARPARAGGLLDAFDARLPYELTGGQRDVGAEIAADLARRHPMHRLLQG 303 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY----EFIKKYTQNTQII----- 351 +VGSGKT+VAL AM V+AGGQA ++AP +LA QHY + + Q ++ Sbjct: 304 EVGSGKTVVALRAMLQVVDAGGQAALLAPTEVLAAQHYRGMLDLLGPLAQAGELGAAEHA 363 Query: 352 --VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409 VE++TG++ A RR+AL +A G A I++GTHAL + + + L LV+VDEQHRFGV+ Sbjct: 364 TRVELVTGSLGAAARRRALAEVASGAAGIVLGTHALLYEGVDFADLGLVVVDEQHRFGVE 423 Query: 410 QRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467 QR L KA PHVL+MTATPIPRT+ +T GD++IS +++ P GR PI + ++P Sbjct: 424 QRDALRAKAEQPPHVLVMTATPIPRTVAMTVYGDLEISTLSQLPRGRSPIASHVVPAAEK 483 Query: 468 ---IDEVIERLKVVLSEGKKAYWICPQIEEK-----------KESNFR---SVVERFNSL 510 +D RL+ ++ G +AY +CP+I + ++ R +V E L Sbjct: 484 PAFLDRAWRRLREEVANGHQAYVVCPRIGDSTTGAEEEPPAVDDTGRRPPLAVTEVAPLL 543 Query: 511 HEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 + I ++HGR+ +K++VM SF NG +L+ATTV+EVG+DV +A+++++ +A Sbjct: 544 ADGPLHGLRIGVLHGRLPADEKDAVMRSFANGELDVLVATTVVEVGVDVPNATMMVVLDA 603 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628 + FG++QLHQLRGRVGRG C+L+ ++ RL + +T DGF +AE DL+QR Sbjct: 604 DRFGVSQLHQLRGRVGRGSAPGLCLLVTEATEGTSARERLDAVASTTDGFKLAELDLEQR 663 Query: 629 KEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLT 674 +EG++LG QSG L L D+ L+ AR +A ++ +DPDLT Sbjct: 664 REGDVLGAAQSGRRSHLRLLSLLRDADLIRDARAEAITLVEEDPDLT 710 >gi|289450213|ref|YP_003474687.1| ATP-dependent DNA helicase RecG [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184760|gb|ADC91185.1| ATP-dependent DNA helicase RecG [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 718 Score = 337 bits (865), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 230/692 (33%), Positives = 368/692 (53%), Gaps = 58/692 (8%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 ++ GV K + ++++ N N R DLL Y P + D +++I E+ VT+ Sbjct: 23 VTQLAGVSAKRAALMARL----NINTCR--DLLNYWPRRYEDWATLSTLADIEPEQEVTV 76 Query: 73 TGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFF---YRKTEML--KNVFFEGRKITVT 126 Q + + Y ++ L D + ++ +++F Y +T++ K F G T++ Sbjct: 77 LARCITMPHLQYKGKLSYLRVGLADASDQLGVIWFNQPYLETQLDIDKVYLFHG---TIS 133 Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPL------------IEAVYSLPTGLSVDLFKKI 174 KNR + + + PL I VY L GL+ + + + Sbjct: 134 ------KNRPLSLQNPAFTPVPELAEAPLNTIKPSALANTFIRPVYPLTAGLTQGVLRNL 187 Query: 175 IVEALSRLPVLPEWIEKD------LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERL 228 I + L+ + E +E++ + Q++ + A IH P +D+ + ARERL Sbjct: 188 IRQCLT---AMREQLEREDYLPLKMRQRQHLTTYVYAVEHIHFPTCLEDY---TIARERL 241 Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA----QKILRNIPFSPTKSQESAIKDI 284 ++EL Q+ L L++K+ PI K A Q ++ +P+ TK+Q +A++DI Sbjct: 242 VFEELFFMQLGLQLLKKRRLNGQTAPIINLDKTAETKYQAVVNALPYRLTKAQIAALQDI 301 Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344 D++ M R++QGDVGSGKT+VA +A+ V AG Q ++MAP GILA+QHY I Sbjct: 302 STDLAVGIPMDRLVQGDVGSGKTIVAALALYRTVLAGYQGLLMAPTGILAEQHYNNISSL 361 Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404 I V ++TG A +R+ + ++ G+ ++IGT A+ D++Q LV+ DEQH Sbjct: 362 LTPYGIKVALLTGKTKGAAKRQITQALSTGEIDLLIGTQAILNDNLQMLHPGLVVTDEQH 421 Query: 405 RFGVQQRLKLT--QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462 RFGV QRL + Q PHVL+M+ATPIPR+L L GD+ IS I E P GR PIKT Sbjct: 422 RFGVNQRLAMIKRQDEQRPHVLVMSATPIPRSLALVLYGDLSISIIDELPPGRLPIKTYT 481 Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF----NSLHEHFTSSI 518 + ++ + +L G++AY ICP + S + E N + FT I Sbjct: 482 VGSADLERAYALIHKLLRLGQQAYVICPLKADTGHSESFAATELGEELKNKVFPEFT--I 539 Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578 ++HG M + +K++VM FKNG +L++TTV+EVG+D +A+++++ NAE FGLAQLHQ Sbjct: 540 GLLHGAMKENEKQTVMADFKNGKINILVSTTVVEVGVDNPNATVLLVMNAERFGLAQLHQ 599 Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638 LRGRVGRG+ S C LL+ + RL + ++ DG+ +AE DL+ R G+ G++Q Sbjct: 600 LRGRVGRGKLQSYC-LLHSDRQQGTARERLVQMCHSNDGYQLAEADLRLRGPGDFFGVRQ 658 Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670 G+P+F +A +L A ++ + IL +D Sbjct: 659 HGLPEFKLANLYEDAGILARAGREVQQILAED 690 >gi|309798694|ref|ZP_07692959.1| ATP-dependent DNA helicase RecG [Streptococcus infantis SK1302] gi|308117637|gb|EFO55048.1| ATP-dependent DNA helicase RecG [Streptococcus infantis SK1302] Length = 392 Score = 337 bits (864), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 168/368 (45%), Positives = 253/368 (68%), Gaps = 5/368 (1%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 +PF+ T++QE ++++IL DM M R+LQGDVGSGKT+VA +AM AAV AG QA +M Sbjct: 1 MPFALTQAQEKSLQEILTDMKSDQHMNRLLQGDVGSGKTVVAGLAMYAAVTAGYQAALMV 60 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P ILA+QH+E ++ + ++ ++TG++ A +R LE IA G+ +I+GTHAL QD Sbjct: 61 PTEILAEQHFESLESLFPDLKL--ALLTGSLKAAEKRTVLETIAKGEVDVIVGTHALIQD 118 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 ++Y +L L+I+DEQHRFGV QR L +K P VL+MTATPIPRTL +T+ GD+D+S I Sbjct: 119 GVEYARLGLIIIDEQHRFGVGQRRILREKGENPDVLMMTATPIPRTLAITAFGDMDVSII 178 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 + PAGRKPI T I ++ +V+ L+ + +G +AY I P IEE + + ++ + Sbjct: 179 DQMPAGRKPIVTRWIKHEQLPQVLTWLESEIQKGSQAYVISPLIEESEALDLKNAIALSE 238 Query: 509 SLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 L HF + +A++HG+M +K+ +M FK +L++TTVIEVG++V +A+++II Sbjct: 239 ELTAHFAEKAKVALLHGKMKSDEKDQIMQEFKERKTDILVSTTVIEVGVNVPNATVMIIM 298 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626 +A+ FGL+QLHQLRGRVGRG++ S +L+ +P + + R+ ++ T +GF++AEEDLK Sbjct: 299 DADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDSGKDRMRIMTETTNGFVLAEEDLK 357 Query: 627 QRKEGEIL 634 R GEIL Sbjct: 358 MRGSGEIL 365 >gi|55981235|ref|YP_144532.1| ATP-dependent DNA helicase RecG [Thermus thermophilus HB8] gi|55772648|dbj|BAD71089.1| DNA helicase RecG [Thermus thermophilus HB8] Length = 770 Score = 337 bits (863), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 217/638 (34%), Positives = 347/638 (54%), Gaps = 19/638 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR--RPYKILLNDGTGE 100 D+L ++P + DR P + E + T+ + + ++ + ++ D G Sbjct: 120 DVLHHYPRRYEDRRALPGARYLEEGQKATLAVKVLAKELVKTPRKGMQLVQVKAQDAWGW 179 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160 L ++ + +L + EG + VTG++ + +N + + H+ ++ ++ I +Y Sbjct: 180 RITLVWFNQPWVLSQIE-EGATLIVTGRVGR-RNGLQLYVEHFEDEGTESLSTGRIVPIY 237 Query: 161 SLPTGLSVDLFKKIIVEALSRLPVLPEWIE---KDLLQKKSFPSIAEAFNIIHNPRKAKD 217 G+S ++ + AL LP+ +E +DL AEA IH P +D Sbjct: 238 PAKEGVSQAFLRRTVHRALELALPLPDPLEAYREDL----GLMPYAEALKAIHFP---ED 290 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 E A RL +DE L ++ LL +G VE + + +PF T++Q Sbjct: 291 EEALKRALLRLKFDEYLLLELKALLEAGGMV--LGRSFRVEEAWVEAFKKALPFPLTRAQ 348 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 E + +I +DM +M R+LQGDVGSGKT+VA A+ A + G Q +MAP ILA+QH Sbjct: 349 ERVMGEIAKDMQSPRQMARLLQGDVGSGKTVVAAFALFLAAKNGAQGALMAPTEILARQH 408 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y+ + +Y I VE++ G+M + A+ R+ G+A + +GTHAL Q+ + + L L Sbjct: 409 YQNLTRYLFPLGIRVELLLGSMTAKEKEAAMARLLSGEAQVAVGTHALIQEGVGFRDLGL 468 Query: 398 VIVDEQHRFGVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 +VDE+HRFGV QR L + A A P VL+M+ATPIPR+L LT GD+++S + E P GR Sbjct: 469 AVVDEEHRFGVLQRRALLKLAKAPPDVLVMSATPIPRSLALTLYGDLEVSVLDEMPPGRV 528 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 P+KT ++P + + + +G + + + P IEE +E + ++ + L Sbjct: 529 PVKTKVLPHRLRLQAYAFAREEVRKGHQVFVVAPAIEESEELDLKAATTLYEELKGLLPG 588 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 +A++HGRM +K+ VM++F+ G LL++TTV+EVG+D+ A++II+ENAE FGLAQ Sbjct: 589 VRLALLHGRMPAREKDEVMEAFRRGDYDLLVSTTVVEVGVDIPKATLIIVENAERFGLAQ 648 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG + + + + RL +L+ + DGF IAE DLK R GE+ G Sbjct: 649 LHQLRGRVGRG-GLEGYAVFIAGEAGQKTLKRLKILEESTDGFYIAEMDLKLRGPGELRG 707 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 +QSG P+ + ++E AR AK I+ +DP L Sbjct: 708 TRQSGYPELKLGDLAEDTGIIEKARALAKAIVDKDPTL 745 >gi|296127094|ref|YP_003634346.1| DEAD/DEAH box helicase domain protein [Brachyspira murdochii DSM 12563] gi|296018910|gb|ADG72147.1| DEAD/DEAH box helicase domain protein [Brachyspira murdochii DSM 12563] Length = 696 Score = 336 bits (862), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 237/698 (33%), Positives = 363/698 (52%), Gaps = 55/698 (7%) Query: 17 RGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITG 74 +GVG KY+ L+K II DL+ + P + DR K+ E E + T Sbjct: 19 KGVGPKYAEILAKKGIIT--------LYDLIAFFPRDYDDRRKTLKLHEALENKEKTSVV 70 Query: 75 YIS--QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK-IKK 131 Y+ SSF Q + +++ DG + + + L +G K+ +TGK ++ Sbjct: 71 YVEVLDISSFNFQYKNKPLVIVTDGAAICEVPIYGGR---LPAGVAKGAKLYLTGKFVRG 127 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-----LP 186 + ++ + +S +++ I +Y L GLS + +IV+ L +P Sbjct: 128 NRGKLQCRMTEFEKPSSNALSYGKIVPIYPLTEGLSQKKLRTLIVDELEVFEKNMKYDIP 187 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 I+K K SI E +H P FE ARE L ++E L Q L R+ Sbjct: 188 NMIKKKYRLKSFVSSIIE----MHFP---TSFEALDEARESLIFEEFLTFQYIHLSERRP 240 Query: 247 FKKEIGIPINVE----GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 I I E + +K+ +PF T+ Q +AI++I D+ K +M R+LQGDV Sbjct: 241 -----NILIKDERYNSSTMLEKVKSALPFELTEDQLNAIEEIKNDLFSKKQMFRLLQGDV 295 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ----NTQIIVEIITGN 358 G+GKT+VA + E+G Q +AP ILA QHY KK + I ++I+T + Sbjct: 296 GAGKTIVAFLTALIPAESGFQTAFLAPTEILALQHYNTFKKLIKLAGLEDTIKIDILTSS 355 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + Q+ R L+R+ G+++I++GTH++ D + + L IVDEQ RFGV QR KL K Sbjct: 356 VSQSERGYLLKRLREGKSNILVGTHSIIYDEVIFKNLSYAIVDEQQRFGVAQRNKLLSKG 415 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 LLMTATPIP++L LT G++D+S I P+ RK + T + D + LK Sbjct: 416 KNVDYLLMTATPIPQSLALTLFGELDLSIIKTLPSSRKGVLTKYKELYERDHCYKFLKNR 475 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDS 536 +S+G++ Y + P IE +S+F ++ F E + S I IIHG+M D +KE +M+ Sbjct: 476 ISKGEQGYVVFPLIE-NNDSSFITLSSEFQRAKETYFSDTQIEIIHGKMKDEEKEYIMNR 534 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F +G K+L +TTVIEVGID +A+ I+IE AE FGL+QLHQLRGRVGRG+++ C L+ Sbjct: 535 FASGEIKVLFSTTVIEVGIDNPNATTILIEGAERFGLSQLHQLRGRVGRGDKLGYCYLIL 594 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 H L+ R++++ T DGF I+E+DL+ R GE LG KQSG+P F + ++ Sbjct: 595 HSELNDIIKERINIICETTDGFKISEKDLELRGAGEFLGDKQSGLPDFKLGNIIKDKEIM 654 Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694 A+ + + +L + + Y+ NEAF Sbjct: 655 RKAKDEMRSLLKDEISKET-----------FYRENEAF 681 >gi|46199206|ref|YP_004873.1| DNA helicase recG [Thermus thermophilus HB27] gi|46196831|gb|AAS81246.1| DNA helicase recG [Thermus thermophilus HB27] Length = 770 Score = 336 bits (862), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 218/638 (34%), Positives = 347/638 (54%), Gaps = 19/638 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR--RPYKILLNDGTGE 100 D+L ++P + DR P + E + T+ + + ++ + ++ D G Sbjct: 120 DVLHHYPRRYEDRRTLPGARYLEEGQKATLAVKVLAKELVKTPRKGMQLVQVKAQDAWGW 179 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160 L ++ + +L + EG + VTG++ + +N + + H+ ++ ++ I +Y Sbjct: 180 RITLVWFNQPWVLSQIE-EGATLIVTGRVGR-RNGLQLYVEHFEDEGTESLSTGRIVPIY 237 Query: 161 SLPTGLSVDLFKKIIVEALSRLPVLPEWIE---KDLLQKKSFPSIAEAFNIIHNPRKAKD 217 G+S ++ + AL LP+ +E +DL AEA IH P +D Sbjct: 238 PAKEGVSQAFLRRTVHRALELALPLPDPLEAYREDL----GLMPYAEALKAIHFP---ED 290 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 E A RL +DE L ++ LL +G VE + + +PF T++Q Sbjct: 291 EEALKRALLRLKFDEYLLLELKALLEAGGMV--LGRSFRVEEAWVEAFKKALPFPLTRAQ 348 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 E + +I +DM +M R+LQGDVGSGKT+VA A+ A + G Q +MAP ILA+QH Sbjct: 349 ERVMGEIAKDMQSPRQMARLLQGDVGSGKTVVAAFALFLAAKNGAQGALMAPTEILARQH 408 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y+ + +Y I VE++ G+M + A+ R+ G+A + +GTHAL Q+ + + L L Sbjct: 409 YQNLTRYLFPLGIRVELLLGSMTAKEKEAAMARLLSGEAQVAVGTHALIQEGVGFRDLGL 468 Query: 398 VIVDEQHRFGVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 +VDE+HRFGV QR L + A A P VL+M+ATPIPR+L LT GD+++S + E P GR Sbjct: 469 AVVDEEHRFGVLQRRALLKLAKAPPDVLVMSATPIPRSLALTLYGDLEVSVLDEMPPGRV 528 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 P+KT ++P + + + +G + + + P IEE +E + ++ + L Sbjct: 529 PVKTKVLPHRLRLQAYAFAREEVRKGHQVFVVAPAIEESEELDLKAATTLYEELKGLLPG 588 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 +A++HGRM +K+ VM++F+ G LL++TTV+EVG+D+ A++II+ENAE FGLAQ Sbjct: 589 VRLALLHGRMPAREKDEVMEAFRRGDYDLLVSTTVVEVGVDIPKATLIIVENAERFGLAQ 648 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG I + + + RL +L+ + DGF IAE DLK R GE+ G Sbjct: 649 LHQLRGRVGRGGLQGYAIFIAGEA-GQKTLKRLKILEESTDGFYIAEMDLKLRGPGELRG 707 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 +QSG P+ + ++E AR AK I+ +DP L Sbjct: 708 TRQSGYPELKLGDLAEDTGIIEKARALAKAIVDKDPTL 745 >gi|315651226|ref|ZP_07904256.1| DNA helicase RecG [Eubacterium saburreum DSM 3986] gi|315486522|gb|EFU76874.1| DNA helicase RecG [Eubacterium saburreum DSM 3986] Length = 687 Score = 336 bits (862), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 221/671 (32%), Positives = 365/671 (54%), Gaps = 36/671 (5%) Query: 13 LSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRP--KISEI----S 65 + +GVG K + +L K+ I N DLL ++P +++ Y+P KIS+I + Sbjct: 6 VKNIKGVGAKTAQYLDKLGIRTVN-------DLLKHYPVRYLE--YKPPTKISDIKKDDN 56 Query: 66 EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 + V I +++ +F ++ L D I ++++ + L +G Sbjct: 57 RDEDVVIKATVTKSPAFVGSNKKVLTTKLTDYIDVIDVIWY--NSAYLSVTLRQGESYIF 114 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 GK+ + +++ + HP + + VY L G+S + +K+I A +P + Sbjct: 115 VGKMSR-RSKNTLEHPAIYTVEEYEKKIGGYKPVYGLTAGISNNTMEKLIKVAFEYIPKM 173 Query: 186 P--EWIEKDLLQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLL 242 E++ + +++K S A IH P K F+ A+ RL++D+ + L Sbjct: 174 DFKEYLPQYIIKKNSLADRESAVRNIHCPMNKTALFD----AKRRLSFDDFFRFLYGIRL 229 Query: 243 MR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 ++ K+ + + I + +I +PF T SQ+ I++IL DMS R+LQGD Sbjct: 230 LKDKRLRIKTKNIIADDKNTLDEIKSVLPFKLTASQDDVIEEILHDMSSGIVTNRLLQGD 289 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY----EFIKKYTQNTQIIVEIITG 357 VGSGKT+VALI + AV++G Q V+M P +LA+QH+ + + K + + I+TG Sbjct: 290 VGSGKTVVALICLYMAVKSGFQGVVMVPTEVLAKQHFKSMFDILSKLDKPPNL--GILTG 347 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 +M + E+I G+ I+IGTHAL +++++ L LV+ DEQHRFGV+QR L+ K Sbjct: 348 SMTKKEHLLMYEKIESGEIDILIGTHALLVENVKFKNLGLVVTDEQHRFGVRQRSTLSGK 407 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 HV++M+ATPIPRTL + GD+DIS I KP GR P+K +I ++ + + Sbjct: 408 GENVHVIVMSATPIPRTLAIILYGDLDISTIESKPVGRLPVKNAVITEKDREKAYRHILL 467 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMD 535 + +G +AY ICP +E+ + +V++ + + F+ + + ++HG+M +K+ +M Sbjct: 468 EVKKGHQAYIICPMVEDSENIEAENVLDYGKKIADKFSQNCKVEVLHGQMHQKEKDDIML 527 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 + N +L+ATTVIEVG+DV +A++I+IENAE FGLA LHQLRGRVGR + S + Sbjct: 528 RYINKEIDILVATTVIEVGVDVPNATVIMIENAERFGLATLHQLRGRVGRS-ALQSYAIF 586 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 SK + RL ++ N+ DGF IA +DL R GE+ G+ QSG P F IA + + Sbjct: 587 VRTSNSKLAKKRLEIIGNSNDGFYIASKDLALRGPGELFGLAQSGEPDFGIADIYNDNDV 646 Query: 656 LEIARKDAKHI 666 ++A++ A I Sbjct: 647 FDMAKEAADMI 657 >gi|256824929|ref|YP_003148889.1| RecG-like helicase [Kytococcus sedentarius DSM 20547] gi|256688322|gb|ACV06124.1| RecG-like helicase [Kytococcus sedentarius DSM 20547] Length = 741 Score = 336 bits (862), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 216/700 (30%), Positives = 355/700 (50%), Gaps = 77/700 (11%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYI--SQHSSFQLQKRRPYKIL-LNDGTG 99 DL+ + P+ ++D ++++ + + G + +Q + Q RR + + DG G Sbjct: 31 DLVQFVPTRYLDPDRPEAMADLVVGQSAVVVGEVVSAQQLPLRNQPRRKRLVASVQDGAG 90 Query: 100 ---EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN---- 152 E+T Y + L G ++ G + + K + M HP Y+ + Sbjct: 91 SRLEVTFFSTYGHADRL----VPGARVMFIGTVGEFKRTLQMTHPDYVVLTGRGEVAGAA 146 Query: 153 -------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAE 204 L V + T L V+ + + AL P V+P + + ++ E Sbjct: 147 AGPGEGLIGLYREVKGM-TSLQVNTAAVLALHALDEAPDVVPPGVSVHGVTGHDLTAL-E 204 Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQ 263 A++ +H P D+ + R RL E Q+ L +R + + + P EG +A Sbjct: 205 AWSALHRP---ADWSEVARGRNRLRLAEAFELQVVLARLRARHEADPATPRPRAEGGVAG 261 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 + +PF+ T +QE ++I ++ + + M R+LQGDVGSGKT+VAL AM AV++GGQ Sbjct: 262 RFDAALPFALTGAQERVGREIAAELERTHPMHRLLQGDVGSGKTMVALRAMLQAVDSGGQ 321 Query: 324 AVIMAPIGILAQQHYEFIKKYTQN--------TQIIVEIITGNMPQAHRRKALERIAHGQ 375 A ++AP ILA QH+ + + + + + ++TG+M QA R+K L G+ Sbjct: 322 AALLAPTEILATQHHRGLVRTLGDLATAGRLAGGVEIRLLTGSMTQAQRQKVLLDTLTGE 381 Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRT 434 I++GTHAL QD++ + L LV++DEQHRFGV+QR L KA PH+L+MTATPIPRT Sbjct: 382 VDILVGTHALLQDTVGFADLALVVIDEQHRFGVEQRDALRAKADPPPHLLVMTATPIPRT 441 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWIC-- 489 + +T GD+D+S + E PAGR+P+ T ++P ++ ER+ ++ G++A+ + Sbjct: 442 VAMTVFGDMDVSVLDELPAGRQPVTTHVVPAGNATWVERAWERIAEEVAAGRQAFVVASR 501 Query: 490 -------------------------------PQIEEKKESNFRSVVERFNSLHEHFTS-- 516 P +E+ V + + EH Sbjct: 502 IDAADDPEDAPGGGAAGSQSGSDGLLVDLPDPAADEEDRPAAVGVEDLVVTAREHLAGRG 561 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + ++HGRM K+ VM +F G +L+ATTV+EVG+DV +AS++++ +A+ FG+AQ Sbjct: 562 IRVEMVHGRMQTETKDGVMAAFAAGEVDVLVATTVVEVGVDVPNASVMLVVDADRFGIAQ 621 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGR+GRG C+L+ H + + RL + T DGF +A DL+ R+EG++LG Sbjct: 622 LHQLRGRIGRGAHPGLCLLVTHVE-AGPTRERLDRVAATTDGFELARADLEMRREGDVLG 680 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 QSG + L++ AR+ A+ + DPDL+ Sbjct: 681 AAQSGSSGLDFVRVLQDAELIDRAREAARAYVRADPDLSG 720 >gi|21552593|gb|AAM54733.1| RecG [Azotobacter vinelandii] Length = 381 Score = 336 bits (861), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 171/364 (46%), Positives = 236/364 (64%), Gaps = 6/364 (1%) Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376 A+EAG Q +MAP ILA+QHY ++ + I + + G + R ALE+IA G Sbjct: 3 AIEAGYQVALMAPTEILAEQHYLNFARWLEPLGIDLAWLAGKLKGKARGAALEKIAGG-C 61 Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIP 432 +++GTHALFQD +++ L L I+DEQHRFGVQQRL L QK PH L+MTATPIP Sbjct: 62 PMVVGTHALFQDEVRFRNLALAIIDEQHRFGVQQRLALRQKGIDGRLCPHQLIMTATPIP 121 Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492 RTL +++ D+D S + E P GR P+ T++I +R EVIER++ EG++AYW+C I Sbjct: 122 RTLAMSAYADLDTSILDELPPGRTPVNTLVIADSRRLEVIERVRAACLEGRQAYWVCTLI 181 Query: 493 EEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551 EE +E ++ F L ++ +IHGRM +K +VM+ FK G +LL+ATTVI Sbjct: 182 EESEELTCQAAETTFEELSAALGELAVGLIHGRMKPAEKAAVMEEFKAGRLQLLVATTVI 241 Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611 EVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLYH PLS+ RL+++ Sbjct: 242 EVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSTASHCVLLYHAPLSQLGRERLAIM 301 Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671 + T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A LL R+ A+ +L P Sbjct: 302 RETSDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPAVREAAQDLLACWP 361 Query: 672 DLTS 675 S Sbjct: 362 QHVS 365 >gi|293192359|ref|ZP_06609470.1| ATP-dependent DNA helicase RecG [Actinomyces odontolyticus F0309] gi|292820274|gb|EFF79268.1| ATP-dependent DNA helicase RecG [Actinomyces odontolyticus F0309] Length = 715 Score = 335 bits (860), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 215/671 (32%), Positives = 349/671 (52%), Gaps = 50/671 (7%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITG------YISQHSSFQLQKRRPYKILLND 96 DLL P + +S + E VTI ++ SS ++ ++ L D Sbjct: 33 DLLLVAPRRYYHWGRLTPLSSLREGEDVTILAEVAGAHLVANRSSSGVR----LEVTLTD 88 Query: 97 GTGEITLLFFYR---KTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN- 152 G ++ FF + K ++ + G+ GK+ + ++ + HP + + +D+ Sbjct: 89 GVQFLSATFFAKNQYKLAPIERLLTPGQSFLFAGKVGAYRGKLQLTHPSFEGVDGEDIER 148 Query: 153 -----FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFN 207 P+ A SL + ++ ++++ L V P+ + D+ ++ F S A+ Sbjct: 149 IASRPIPIYPATGSLAS-WAIARAIGMVLDHLDDAHV-PDPVPADVRERAGFASHADCLR 206 Query: 208 IIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267 +H P +D++ AR+ LA+ E Q+ L R+ + + ++ + ++ Sbjct: 207 ALHQPETDEDYQQ---ARKALAFAEAFVLQVGLAAQRRGARAVAALASPIDAPLCERFRS 263 Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 ++PF T SQ A+ I D++ + M R+LQGDVGSGKT+VAL A+ V AG Q + Sbjct: 264 SLPFELTDSQREAVAQIGADLAGEVPMQRLLQGDVGSGKTVVALSALLQVVAAGHQGAFV 323 Query: 328 APIGILAQQHYEFIKKYTQ---NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384 AP +LA+QH ++ + V ++TG+ A RR+ + + I+ GTHA Sbjct: 324 APTEVLAEQHAASLRALLEPLGADAPDVRLLTGSTTPAARREIQSAMNAAEPLIVAGTHA 383 Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLT---QKATAPHVLLMTATPIPRTLVLTSLG 441 LFQ+S+++ L LV+VDEQHRFGV+QR L + A H L+MTATPIPRT+ +T G Sbjct: 384 LFQESVRFADLALVVVDEQHRFGVEQRAALRGAREDGRAVHELVMTATPIPRTIAMTVFG 443 Query: 442 DIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQI------ 492 D+D ++++ P+GR P+ T + ++ R +++G++ Y +CP+I Sbjct: 444 DLDDTRMSGMPSGRTPVATYLADSANAAWVERTWARAAEEIAQGRRVYVVCPRIDASDDV 503 Query: 493 ---EEKKESNFRSVVERFNSLHEHFTSSIAIIH---GRMSDIDKESVMDSFKNGTCKLLI 546 EE+ SV E L H S IH GR K +M+ F G LL+ Sbjct: 504 ADAEEEGARPLASVEEVTAYLRSHPALSGIAIHELTGRTPSPVKAQIMEDFSTGRAPLLV 563 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 ATTVIEVG+DV +A++++I +A+ FGLAQLHQLRGRVGR S CI ++ L+ + Sbjct: 564 ATTVIEVGVDVSEATLMVILDAQQFGLAQLHQLRGRVGRSSLPSLCIAMHRHELTDSGRA 623 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP---KFLIAQPELHDSLLEIARKDA 663 RL +T DGF +AE DL+ RKEG++LG QSG +FL + + ++L+ A+ +A Sbjct: 624 RLQAFADTTDGFELAEADLRLRKEGDVLGAGQSGTATHLRFLSVRRD--EALIRRAKGEA 681 Query: 664 KHILTQDPDLT 674 + +L QDP L Sbjct: 682 ETLLEQDPMLA 692 >gi|34763881|ref|ZP_00144785.1| ATP-dependent DNA helicase recG [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886344|gb|EAA23615.1| ATP-dependent DNA helicase recG [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 619 Score = 335 bits (860), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 219/563 (38%), Positives = 330/563 (58%), Gaps = 19/563 (3%) Query: 87 RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IF 145 ++ K ++ DGTG + +L+F +K G + G+ KK +++P Y +F Sbjct: 13 KKIVKAMVTDGTGIMEILWF--GMPYIKKSLKIGEEYLFIGQTKK-SAVFQLINPEYKLF 69 Query: 146 HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAE 204 Q V+ I +YS ++ + +K++ + L L E I K L+++ Sbjct: 70 SGQQKVSENEILPIYSSNKNITQNSLRKLVEKFLVNFLNYFEENIPKKLIKEYRIMERKS 129 Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI--A 262 A IH P K+ E A+ R A +ELL ++ +L R + VEGK Sbjct: 130 AIKNIHYPISMKEIE---EAKRRFAIEELLILELGILKNRFIIENSNSKNYKVEGKKEKV 186 Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 ++ L + F+ T +Q+ IK+I ++S + R++QGDVGSGKT+VA++ + E G Sbjct: 187 REFLSQLTFNLTNAQKRVIKEIYDEISNGKIVNRLIQGDVGSGKTVVAMVMLIYMAENGY 246 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q +MAP ILA QHY IK+ + + VE++T ++ + + LE IA+G+ I+IGT Sbjct: 247 QGALMAPTEILANQHYLGIKERLEKIGLRVELLTSSIKGKKKNEILEGIANGKIDIVIGT 306 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H+L +D + + KL L+++DEQHRFGV QR KL +K ++L+M+ATPIPR+L L+ GD Sbjct: 307 HSLIEDDVIFKKLGLIVIDEQHRFGVNQRNKLREKGFLGNLLVMSATPIPRSLALSIYGD 366 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL----SEGKKAYWICPQIEEKKES 498 +D+S I E P GR PIKT I DE +E++ + +EG +AY++ P IE + Sbjct: 367 LDLSIIDELPPGRTPIKTKWIA---SDEDLEKMYNFIYKKVNEGNQAYFVAPLIETSDKM 423 Query: 499 NFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557 +SV + + F++ I IIHG+M +K+ VM FKN +LIATTVIEVGIDV Sbjct: 424 ALKSVDKVSEEIERKFSNKKIGIIHGKMKAKEKDDVMLKFKNKEYDILIATTVIEVGIDV 483 Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617 ++I+ I NAE FGL+ LHQLRGRVGRG + S C L+ + +++NS RLS+++ TEDG Sbjct: 484 PASTIMTIYNAERFGLSALHQLRGRVGRGSKQSYCFLISN-SITENSKQRLSIMEETEDG 542 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F IAEEDLK R GEI G++QSG Sbjct: 543 FRIAEEDLKLRNSGEIFGLRQSG 565 >gi|108804209|ref|YP_644146.1| ATP-dependent DNA helicase RecG [Rubrobacter xylanophilus DSM 9941] gi|108765452|gb|ABG04334.1| ATP-dependent DNA helicase RecG [Rubrobacter xylanophilus DSM 9941] Length = 710 Score = 335 bits (860), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 236/674 (35%), Positives = 359/674 (53%), Gaps = 22/674 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS-EERIV 70 P+ GVG + L ++ + DL+ ++PS D +ISE+ ER Sbjct: 25 PVGELPGVGPRIERALREL------GISSVADLITHYPSRHEDLSNVRRISELRVGERAT 78 Query: 71 TITGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 + + + RP + L DGTG I + + R L+ G ++ V+G+ Sbjct: 79 VLARVTGTRPVGRPVRGRPPGFSAQLYDGTGYIPAVVWGR--HWLQGQLVPGTRVVVSGE 136 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFP---LIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 +++ + + P VY + + +I AL+ + + Sbjct: 137 VQRRYGIQLAARSIELVDGEDGQGGPHAGRFVPVYPSNRHIQPRRLRTLIHRALAGVGRI 196 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 + + DLL ++ P++ +A + +H P D + A RL + EL Q AL + Sbjct: 197 LDPLPADLLARRDLPALHDAIHEVHFP---HDRRSLAAALRRLVFQELFVIQAALAARKA 253 Query: 246 QFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 + E G +G + L+ +PF T +Q+ + +IL DM + M R+LQGDVGS Sbjct: 254 HAARHERGRSHAGDGSLLNPYLQGLPFGFTGAQQRVLGEILADMRSERPMRRLLQGDVGS 313 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKT VA+ A+ AVEAGGQ +MAP +LA+QHY I + + V ++TG+ A R Sbjct: 314 GKTAVAVAALLTAVEAGGQGALMAPTEVLAEQHYLSISGALRKLPVRVVLLTGSQGAARR 373 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424 R+ALE + G+AHI +GTHAL Q + + L LV+VDEQHRFGV QR + +K P L Sbjct: 374 REALEALRSGEAHIAVGTHALIQKGVGFRDLSLVVVDEQHRFGVGQRTTIREKGRTPDTL 433 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 +MTATPIPRTL LT GD+++S I E P GRKP++T ++P+ R E ++ L G++ Sbjct: 434 IMTATPIPRTLSLTLYGDLEVSVIDELPPGRKPVETRLVPLGRRHEAYGEVRRELERGRQ 493 Query: 485 AYWICPQIEEKKE-SNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541 AY ICP +EE + R+ E + L + ++HGRM +K VM +F+ G Sbjct: 494 AYVICPLVEESEALEEVRAAEELYEELRRDIFPERRVGLLHGRMRAQEKREVMSAFRAGR 553 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 ++L+AT V+EVG+DV +AS+I+IE AE FGL+QLHQLRGRV RG C L+ P + Sbjct: 554 VEVLVATVVVEVGVDVPNASVIVIEGAERFGLSQLHQLRGRVCRGTHPPRCFLVAD-PAT 612 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 + + RL L +DGF ++E DL R EG + G +QSGMP +A+ +L AR+ Sbjct: 613 EEAGRRLEALVEHQDGFRLSEVDLAIRGEGTLFGSRQSGMPDLKVAKLLRDVEVLVEARR 672 Query: 662 DAKHILTQDPDLTS 675 +A ++ +DP L S Sbjct: 673 EAFDLVARDPALRS 686 >gi|291299625|ref|YP_003510903.1| ATP-dependent DNA helicase RecG [Stackebrandtia nassauensis DSM 44728] gi|290568845|gb|ADD41810.1| ATP-dependent DNA helicase RecG [Stackebrandtia nassauensis DSM 44728] Length = 718 Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 222/676 (32%), Positives = 361/676 (53%), Gaps = 58/676 (8%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP--YKILLNDGTGE 100 DL+ ++P + R R + + T+ + ++ ++ RR +++++D G Sbjct: 31 DLIHHYPFRYAQRGERTDLDSLEIGEQATVLAQVRAVTNKPMRSRRGSMLEVVVSDDDGR 90 Query: 101 -ITLLFFYR--KTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN----- 152 +TL FF + +T LK GR +GK+ + + R + P + D + Sbjct: 91 TLTLTFFNQPWQTRYLKA----GRWGLFSGKVTEFRGRRQLNGPDFRMLADPDDDEAGEM 146 Query: 153 --------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAE 204 P+ A +PT + + AL L + + +DL K S + Sbjct: 147 IEEFAGALIPVYRAAGKVPTWT----IARCVRVALDVLEPPADPLPEDLRHKHSLIGFND 202 Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQ 263 A + IH P + E A++RL + E + Q+ L+ + + +P + + Sbjct: 203 ALHAIHRP---ESTEQLYAAKKRLKWQEAFSLQLTLVQRKARAATTPAVPRPGRDDGLLA 259 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 +PF T Q ++ +S + M R+LQGDVG+GKTLV++ AM V++G Q Sbjct: 260 AFDAKLPFELTDGQREVGDELAAALSTPHPMHRLLQGDVGAGKTLVSVRAMLQVVDSGAQ 319 Query: 324 AVIMAPIGILAQQHYEFIKKY-------------TQNTQIIVEIITGNMPQAHRRKALER 370 AV++AP +LA QHY I K T+ T++ ++TG++ +R+AL Sbjct: 320 AVLLAPTEVLAAQHYRTILKQLGDLGRGGELGAPTEATRVT--LVTGSLGAKAKREALAS 377 Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTAT 429 +A G A I++GTHAL + + + L LV+VDEQHRFGV+QR L KA+ PHVL+MTAT Sbjct: 378 LADGSAGIVVGTHALLYEGVDFADLGLVVVDEQHRFGVEQRDALRAKASDPPHVLVMTAT 437 Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAY 486 PIPRT+ +T GD++ SK+ + P GR PIKT ++P + +RL+ + +G +AY Sbjct: 438 PIPRTVAMTVYGDLETSKLGQLPQGRSPIKTHVVPGTDERWVARSWQRLREEVGKGHQAY 497 Query: 487 WICPQI--EEKKESNFR----SVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFK 538 +CP++ ++K + + R +V++ L + S + I+HGRM +K++VM F Sbjct: 498 VVCPRVGDDDKVDDSERRAPLAVLDVGPRLADGPLSGLKLGILHGRMPPDEKDAVMGRFS 557 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G +L+ATTVIEVG+DV +A++++I +AE FG++QLHQLRGRVGRG C+L+ Sbjct: 558 AGELDVLVATTVIEVGVDVPNATMMVIMDAERFGVSQLHQLRGRVGRGSAPGLCLLVTEA 617 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLE 657 + S RL + +T DGF +AE DL+QR+EG++LG QSG + L D+ L+ Sbjct: 618 NAASPSGERLEAVASTTDGFRLAELDLEQRREGDVLGDAQSGAKSHVRLLSLLRDAELIG 677 Query: 658 IARKDAKHILTQDPDL 673 AR +A ++ DP+L Sbjct: 678 EARAEAVEVIAADPEL 693 >gi|187735706|ref|YP_001877818.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC BAA-835] gi|187425758|gb|ACD05037.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC BAA-835] Length = 699 Score = 335 bits (858), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 218/658 (33%), Positives = 353/658 (53%), Gaps = 29/658 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEE-------RIVTITGYISQHSSFQLQKRRPYKILLN 95 DLLF P + DR + +S R+V + + + R +L + Sbjct: 46 DLLFMLPRRYEDRRMFDRYDSLSSGVPVCLRGRVVDVGWKGWGGRGGKGRGRYVEAVLAD 105 Query: 96 DGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF---HNSQDV 151 + + G+ + + + G+++ V G++K ++ MVHP + + Q + Sbjct: 106 EQSLGQTRFSCLWFSMPGVARMLCAGQEMIVYGRMKPYGKKLSMVHPDFEIIREGDEQSI 165 Query: 152 NFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHN 211 + I VY G++V ++I+ E LSRL PE ++ + A +H Sbjct: 166 HLNRIVPVYGGRMGIAVRRLREIVWETLSRLSPAPE---PEVYEFVPDTPCKTALRDLHF 222 Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271 P A+ AR R A +E LA Q+ + R++ + G+ + + + ++PF Sbjct: 223 PETAEA---RDRARRRFALEECLAQQLNVAYRRRRADEVPGMRTAGSSHLVKDLADSLPF 279 Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331 T++Q+ +++I +DM M R+LQGDVGSGKTLVAL AM AVE G AV+MAP Sbjct: 280 ELTEAQKRCVREIYRDMKAPRSMNRLLQGDVGSGKTLVALCAMLLAVEHGYSAVMMAPTQ 339 Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG-QAHIIIGTHALFQDSI 390 ILA+QHY ++ + V ++T + RK ++ G Q I++GTHAL Sbjct: 340 ILAEQHYLKFRQMLDKLDVPVSLVTAD------RKEESHVSFGKQGGIVVGTHALLYGKN 393 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ LV++DEQH+FGV QR KL + P VL+MTATPIPRTL LT G++D+S + Sbjct: 394 VPERVGLVVIDEQHKFGVNQREKLIDREERPDVLVMTATPIPRTLTLTFYGELDVSILDG 453 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN-- 508 P GR + T I +V+ ++ L EG++ Y + P I+ + ++V + ++ Sbjct: 454 VPRGRGAVVTAIRTEKDKGKVLAFVRNQLEEGRQIYVVSPLIDGEDSRKGKAVTKEWDEW 513 Query: 509 -SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 +L H + ++HGRMS +KE+VM F++ +L++TTV+EVG+DV +A+++II N Sbjct: 514 KALLPHV--DVGLLHGRMSSEEKEAVMKDFRSNRISVLVSTTVVEVGVDVPNATVMIINN 571 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627 AE FGL+QLHQLRGR+GRG S CIL+ + +L +++ T +GF +AE+DL+ Sbjct: 572 AESFGLSQLHQLRGRIGRGSHKSYCILMTDARPEDEQWEKLRIVETTANGFDLAEQDLRL 631 Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685 R G++LG QSG+ + L L+ R+ A+ IL +DP+L S + + +R LL Sbjct: 632 RGPGDVLGTSQSGLKGVRFEEWLLDARLIHRGRQLAEAILAEDPNLESAKYRPLRFLL 689 >gi|319948348|ref|ZP_08022492.1| ATP-dependent DNA helicase RecG [Dietzia cinnamea P4] gi|319437979|gb|EFV92955.1| ATP-dependent DNA helicase RecG [Dietzia cinnamea P4] Length = 756 Score = 335 bits (858), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 225/708 (31%), Positives = 372/708 (52%), Gaps = 87/708 (12%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS--QHSSFQLQKRRPYKIL---LNDG 97 DLL P + R ++ + VT+ G ++ + ++ +K +P ++L + DG Sbjct: 34 DLLHTLPRRYRQHGQRYDKRQLVDGERVTVIGTVTTARTRTYHTKKGQPREMLTLTVEDG 93 Query: 98 TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI-----------FH 146 E ++FF ++ +K + G G + + + HP ++ Sbjct: 94 DTEFRVVFFAGRS--IKYLLPVGTLAMFDGTVSHFRRAPDLKHPEFLVLRPASGQGGQLK 151 Query: 147 NSQDV-------------------NFPLIEAVYSLPTGL-SVDLFKKIIVEALSRLPVLP 186 S D+ + PL+ VY+ G+ S DL ++ + +PV+ Sbjct: 152 GSGDLAALARLAAEIDAEGGPSLFDRPLL-PVYAAKEGVTSWDLLGAVVTALRALVPVV- 209 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 + ++ + + EA H P A++ + A RL +DE LA Q+ L R+ Sbjct: 210 DPLDDTVRSAAGLMGLDEALRKAHLPENAREKDH---AGHRLRFDEALALQLLLGARRRF 266 Query: 247 FKKEIG--IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 ++ P+ +G I + +PF T Q++ +++I D+++ M R+LQG+VGS Sbjct: 267 VARDPAPASPVRDDG-IRAAMGARMPFELTDGQKAVLEEISADLARDEPMNRLLQGEVGS 325 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-------------TQNTQII 351 GKT+VAL+AM ++AG Q V++AP +LA QH+ + + T+++ Sbjct: 326 GKTVVALLAMLQVLDAGRQCVMLAPTEVLAVQHHRSLTAMLGDLGERGRLGAPDEATRVV 385 Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411 ++TG+M A RR AL I G+A I++GTHAL QDS+ ++ L LV+VDEQHRFGV+QR Sbjct: 386 --LLTGSMSTAQRRAALLDIVTGEAGIVVGTHALIQDSVDFFDLGLVVVDEQHRFGVRQR 443 Query: 412 LKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467 +L K A PH+L+MTATPIPRT+ +T GD+++S++ E P GR+PI T ++P Sbjct: 444 DRLRSKGRAGMVPHLLVMTATPIPRTIAMTVFGDLEVSELEELPGGRRPISTSVVPARER 503 Query: 468 ---IDEVIERLKVVLSEGKKAYWICPQIE------------EKKESNFRSVVERFNSLHE 512 + ER++ ++ G +AY +C +I+ + E R + LHE Sbjct: 504 PAWLVRAWERVREEVAAGHRAYVVCSRIDADDGRSDDGTKGDDDEGGDRPPLVAAVDLHE 563 Query: 513 HFTSS------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 + ++ I ++HGR+ +K++ M F G +L++TTVIEVG+DV +A+++++ Sbjct: 564 YLSTGPLAGLRIGLLHGRLPSEEKDATMADFAAGRLDVLVSTTVIEVGVDVPEATVMVVM 623 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626 +AE FG++QLHQLRGRVGRG C+L+ + S RL + T DGF++A DL Sbjct: 624 DAERFGVSQLHQLRGRVGRGGLPGLCLLVTNSRAGSRSMERLDAVAATTDGFVLAHLDLV 683 Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDL 673 QR+EG++LG QSG L + D ++EIAR+ A+ IL DP L Sbjct: 684 QRREGDVLGDAQSGALSALRLLSVVDDGDVIEIARRHAEEILEADPGL 731 >gi|258652096|ref|YP_003201252.1| ATP-dependent DNA helicase RecG [Nakamurella multipartita DSM 44233] gi|258555321|gb|ACV78263.1| ATP-dependent DNA helicase RecG [Nakamurella multipartita DSM 44233] Length = 760 Score = 335 bits (858), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 216/654 (33%), Positives = 340/654 (51%), Gaps = 74/654 (11%) Query: 91 KILLNDGTGEITLLFF--YRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF--- 145 K+++ D ++T FF Y T+ L G +GKI K + + M P Sbjct: 95 KVVIGDDHRQLTCTFFNQYHWTKTLP----PGTDAMFSGKITKFQTELQMSSPSVAILSD 150 Query: 146 ---HNSQDVNFPL--IEA-------VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193 + N P+ IE+ VY L G++ + ++ + L P + + + + L Sbjct: 151 GRGSDGSTENNPIEIIESFPGGVIPVYPLVEGVTQAVLQRSVRLLLDLGPRIEDPVPEVL 210 Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-G 252 L ++ +A A + IH PR + + A+ RL YDE L+ Q+ +L RK +E Sbjct: 211 LAQRGLVDLATALHDIHRPRTQEHLDR---AKARLRYDEALSVQL-VLARRKALAREFPA 266 Query: 253 IPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 P V G + N+PF T Q + + I D++ + M R+LQG+VGSGKT+VAL Sbjct: 267 EPCPRVPGGLLDAFDANLPFELTAGQRAVGEAIGTDLATIHPMNRLLQGEVGSGKTVVAL 326 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITGNMP 360 AM +++G QAV++AP +LA QH +++ + ++TG++P Sbjct: 327 RAMLQVIDSGRQAVMLAPTEVLAAQHARSLRQVLGPLGRGGELGAPAESTAITLLTGSLP 386 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK--- 417 R+ AL IA GQA I++GTHAL + + + L L++VDEQHRFGV+QR L K Sbjct: 387 AKARKLALLTIASGQAGIVVGTHALLSEGVFFANLGLIVVDEQHRFGVEQRHALRTKHPD 446 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIE 473 + PHVL+MTATPIPRT+ +T GD+D S + E P GR PI T ++P ++ + Sbjct: 447 GSPPHVLVMTATPIPRTVAMTVFGDLDTSTLDELPRGRSPIGTTVVPAAEKPAWVERAWQ 506 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---------------- 517 R++ + +G +AY +CP+I + + + S+ E + + Sbjct: 507 RIREEVGKGHQAYVVCPKIGDGSGEDAAGELFEDGSVAETDSDAEGESTRRAPLAVTQVA 566 Query: 518 ------------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + ++HGR+ +K++VM +F G +L+ATTVIEVG+DV +A++++I Sbjct: 567 AMLRDGPLADLRVGVLHGRLVPAEKDAVMTAFAAGELDVLVATTVIEVGVDVPNATMMVI 626 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625 +AE FG++QLHQLRGRVGRG C+L+ P RL+ + T DGF +AE DL Sbjct: 627 MDAERFGMSQLHQLRGRVGRGSAPGICLLVTESPEGTPGRFRLAAVAATTDGFELAEADL 686 Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTSVRG 678 + R+EG +LG +Q+G L L D ++E AR DA ++ DP + G Sbjct: 687 ELRREGNVLGTEQAGKSTALRQLSLLRDRDVIEDARTDAAGLVGDDPAMARWPG 740 >gi|302865853|ref|YP_003834490.1| ATP-dependent DNA helicase RecG [Micromonospora aurantiaca ATCC 27029] gi|302568712|gb|ADL44914.1| ATP-dependent DNA helicase RecG [Micromonospora aurantiaca ATCC 27029] Length = 733 Score = 334 bits (857), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 220/706 (31%), Positives = 367/706 (51%), Gaps = 62/706 (8%) Query: 19 VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78 VG++ + L+ ++ A DL+++ P + +R I + VT+ + + Sbjct: 16 VGERTAKALAGHLDLHTAG-----DLIYHFPRRYDERGEHTDIRSLDVGEQVTVLAQVQR 70 Query: 79 HSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 + +++RR ++ + DG+G + F+ + GR GK+ + + + Sbjct: 71 TAVRPMRQRRGNLLEVTVGDGSGGVLTCTFFGNQAWRERELRPGRWGLFAGKVTEFRGKR 130 Query: 137 IMVHPHYIFHNSQDVN---------------FPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + P Y+ P+ A ++PT + + ++ Sbjct: 131 QLNGPEYVLLGEGSEGEAAANEEVEEFAGALIPVYPAAAAVPTWVIARCVRVVLDTFTPP 190 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 LP + ++ I A IH P E AR RL +DE A Q+ L+ Sbjct: 191 EDPLPATVRA----TRNLADIGTALREIHRPTSK---EALYRARRRLKWDEAFAVQLTLV 243 Query: 242 LMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 +++ G + G + +P+ T Q+ ++I D+++ + M R+LQG Sbjct: 244 QRKQRAAASPGRARPAKAGGLLDAFDARLPYELTSGQQVVGREIAADLARPHPMHRLLQG 303 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI-----------KKYTQNTQ 349 +VGSGKT+VAL AM V+AGGQA ++AP +LA QH+ I + + Sbjct: 304 EVGSGKTVVALRAMLQVVDAGGQAALLAPTEVLAAQHHRGILDLLGPLGRAGELGAADDA 363 Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409 VE++TG++ A RR+AL +A G+A I++GTHAL + + ++ L LV+VDEQHRFGV+ Sbjct: 364 TRVELVTGSLGAAARRRALAEVAEGRAGIVLGTHALLYEGVDFHDLGLVVVDEQHRFGVE 423 Query: 410 QRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467 QR L KA PHVL+MTATPIPRT+ +T GD++ S +++ P GR PI + ++P Sbjct: 424 QRDALRAKAEQPPHVLVMTATPIPRTVAMTVYGDLETSTLSQLPQGRSPIASHVVPAAEK 483 Query: 468 ---IDEVIERLKVVLSEGKKAYWICPQIEE---------KKESNFR----SVVERFNSLH 511 +D RL+ +++G +AY +CP+I E +++ N R +V E L Sbjct: 484 PAFLDRAWRRLREEVTKGHQAYVVCPRIGEGPVSDEEPPREDDNGRRPPLAVTEVAPLLA 543 Query: 512 EHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 E I ++HGR+ +K++VM ++ +G +L+ATTV+EVG++V +A+++I+ +A+ Sbjct: 544 EGPLHGLRIGVLHGRLPADEKDAVMRAYADGELDVLVATTVVEVGVNVPNATVMIVLDAD 603 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629 FG++QLHQLRGRVGRG C+L+ ++ RL + +T DGF +AE DL+QR+ Sbjct: 604 RFGVSQLHQLRGRVGRGSAAGLCLLVTEAAEGSSARERLDAVASTTDGFKLAELDLEQRR 663 Query: 630 EGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLT 674 EG++LG QSG L L D+ L+ AR +A ++ DPDL+ Sbjct: 664 EGDVLGATQSGRRSHLRLLSLLRDTELIRDARAEAIELVEDDPDLS 709 >gi|327537366|gb|EGF24098.1| ATP-dependent DNA helicase RecG [Rhodopirellula baltica WH47] Length = 556 Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 186/521 (35%), Positives = 293/521 (56%), Gaps = 33/521 (6%) Query: 184 VLPEWIEKDLLQKKS---------FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234 VLPE + + Q+ + P I++A IH P D + A+ RL + ELL Sbjct: 16 VLPERLRTEAAQRLNAAGMELPDVLPEISDALRGIHLPESEADL---TAAQTRLVFQELL 72 Query: 235 AGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 Q+AL + R+ E+ P + + +ILR PF T Q + I DM+++ Sbjct: 73 VMQLALAMRRRSLTSELRAPSLECTATVRNRILRRFPFELTGDQRRVMDVIAADMARQFP 132 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R+LQGDVGSGKT+VA+ AM AV G QA +MAP +LA+QH+ +++ ++++ V Sbjct: 133 MNRLLQGDVGSGKTVVAIFAMLVAVAGGHQATLMAPTEVLARQHHATLQRMLADSRVRVG 192 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++ G++ A RR+ +E+I G+ I+IGT AL +++++L L ++DEQH+FGV+QR+ Sbjct: 193 LLCGSLGAAERRETVEKIRAGELDIVIGTQALLY-GVEFHRLGLCVIDEQHKFGVKQRVT 251 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 L PH L+M+ATPIPR++ +T GD+D+S + EKPAGR + T + + D Sbjct: 252 LRDGGVDPHYLVMSATPIPRSVAMTQFGDVDLSTLREKPAGRGAVHTYLAGDSWRDRWWA 311 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSV----------VERFNSLHEHFTS------- 516 +K ++EG++A+ + P++ + ES + E S+H + Sbjct: 312 FVKERVAEGRQAFVVAPRVGPEVESADEELSELIDPAEPPAEDITSVHSTYEQLRTGPLK 371 Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + ++HGRM+ +K+ VM+SF G +L++TTVIEVGIDV +A+++ I FGLA Sbjct: 372 GLRVGLLHGRMASDEKQQVMESFAEGELDVLVSTTVIEVGIDVPNATVMAILGGNRFGLA 431 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRV RG + RL V + T DGF +AE D + R G++L Sbjct: 432 QLHQLRGRVSRGTHAGHVCVFVDGDKPPQDDERLKVFEQTLDGFELAEADFRLRGPGDVL 491 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 G +QSG + IA +L++AR+ A+ + QDP++ S Sbjct: 492 GQRQSGDARLRIADLHRDVEILQVAREMAQDWIDQDPEMES 532 >gi|225022638|ref|ZP_03711830.1| hypothetical protein CORMATOL_02681 [Corynebacterium matruchotii ATCC 33806] gi|224944546|gb|EEG25755.1| hypothetical protein CORMATOL_02681 [Corynebacterium matruchotii ATCC 33806] Length = 711 Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 228/679 (33%), Positives = 344/679 (50%), Gaps = 67/679 (9%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE-I 101 +LL ++P ++ + P +++ ++ IVT G I ++ +K + T E I Sbjct: 33 ELLTHYPRTYATHNDTPFLNQANDGDIVTCIGEIIHTATIHTKKTTTIYTITIQTTNELI 92 Query: 102 TLLFFYRK---TEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 FF+ K + G TGKIK + + HP ++ N+ P Sbjct: 93 KATFFHAKPHQAAWCERTLTRGTTAIFTGKIKTYRGAPQLQHPDFLLLNTP---HPTSTG 149 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPE------W---------------IEKDL--LQ 195 T D + +L +P+ P W I L Sbjct: 150 ALKQLTAYGNDTDISNFLTSLPAIPIYPARQRITTWRILGAIHHILDHTNPIPDPLGPFT 209 Query: 196 KKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI 255 P+ A IH +D R RLAY+E LA + + + R P+ Sbjct: 210 PPDLPTFDRALRGIH-----QDGTNAYTYRHRLAYNEALALALVMEIRRHDTTTRHATPL 264 Query: 256 NVEGKIA----QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 + A + ++ N+P++ T Q++ I I D++ + M R+LQG+VGSGKT++AL Sbjct: 265 SPHPTGAPHHRETLINNLPYTLTTGQQTIINTIATDLNSPHPMQRLLQGEVGSGKTIIAL 324 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI--ITGNMPQAHRRKALE 369 IAM AVE G Q ++AP +LA QH + + N I + I +TG+M + AL Sbjct: 325 IAMLQAVENGKQCALLAPTSVLAHQHGHSLTELLTNAGINLTITTLTGDMTPTQKNHALL 384 Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA---TAPHVLLM 426 I G A+IIIGTHAL QD++++Y L LVI+DEQHRFGV+QR L K T PH+L+M Sbjct: 385 AIISGDANIIIGTHALIQDTVEFYDLGLVIIDEQHRFGVEQRDSLRTKGKNHTTPHLLVM 444 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP---INRIDEVIERLKVVLSEGK 483 TATPIPRT+ +T GD++ S + E P GR+PIK+ ++P E ++ + +G Sbjct: 445 TATPIPRTIAMTFFGDLNHSTLNELPGGRRPIKSYVVPEYLPKYTTRAYEVMREHIHQGH 504 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS------IAIIHGRMSDIDKESVMDSF 537 + Y +CP+I V+E H+H + + I ++HG++ D DK++ M F Sbjct: 505 QIYIVCPRINGPG-----GVLE----THQHLSETEFKNYRIGLLHGQLKDADKDTTMRQF 555 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 NG +LIATTVIEVGIDV +A+II+I +E+ G++QLHQLRGRVGRG S C + Sbjct: 556 ANGDLDILIATTVIEVGIDVPNATIIMIRESENLGVSQLHQLRGRVGRGGYDSICFFHHT 615 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDS 654 + R+ + T DGF +AE DL QR EG++LG QSG + FL ++ Sbjct: 616 AERGTPADKRIWQMAATTDGFQVAEIDLIQRHEGDVLGTSQSGTNRKIAFLNLARDI--G 673 Query: 655 LLEIARKDAKHILTQDPDL 673 L+ A +DAK+I+ + DL Sbjct: 674 LINRANRDAKNIVAHNLDL 692 >gi|305681976|ref|ZP_07404780.1| putative ATP-dependent DNA helicase RecG [Corynebacterium matruchotii ATCC 14266] gi|305658449|gb|EFM47952.1| putative ATP-dependent DNA helicase RecG [Corynebacterium matruchotii ATCC 14266] Length = 711 Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 228/679 (33%), Positives = 344/679 (50%), Gaps = 67/679 (9%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE-I 101 +LL ++P ++ + P +++ ++ IVT G I ++ +K + T E I Sbjct: 33 ELLTHYPRAYATHNDTPFLNQANDGDIVTCIGEIIHTATIHTKKTTTIYTITIQTTNELI 92 Query: 102 TLLFFYRK---TEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158 FF+ K + G TGKIK + + HP ++ N+ P Sbjct: 93 KATFFHAKPHQAAWCERTLTRGTTAIFTGKIKTYRGAPQLQHPDFLLLNTP---HPTSTG 149 Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPE------W---------------IEKDL--LQ 195 T D + +L +P+ P W I L Sbjct: 150 ALKQLTAYGNDTDISNFLTSLPAIPIYPARQRITTWRILGAIHHILDHTNPIPDPLGPFT 209 Query: 196 KKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI 255 P+ A IH +D R RLAY+E LA + + + R P+ Sbjct: 210 PPDLPTFDRALRGIH-----QDGTNAYTYRHRLAYNEALALALVMEIRRHDTTTRHATPL 264 Query: 256 NVEGKIA----QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 + A + ++ N+P++ T Q++ I I D++ + M R+LQG+VGSGKT++AL Sbjct: 265 SPHPTGAPHHRETLINNLPYTLTTGQQTIINTIATDLNSPHPMQRLLQGEVGSGKTIIAL 324 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI--ITGNMPQAHRRKALE 369 IAM AVE G Q ++AP +LA QH + + N I + I +TG+M + AL Sbjct: 325 IAMLQAVENGKQCALLAPTSVLAHQHGHSLTELLTNAGINLTITTLTGDMTPTQKNHALL 384 Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA---TAPHVLLM 426 I G A+IIIGTHAL QD++++Y L LVI+DEQHRFGV+QR L K T PH+L+M Sbjct: 385 AIISGDANIIIGTHALIQDTVEFYDLGLVIIDEQHRFGVEQRDSLRTKGKNHTTPHLLVM 444 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP---INRIDEVIERLKVVLSEGK 483 TATPIPRT+ +T GD++ S + E P GR+PIK+ ++P E ++ + +G Sbjct: 445 TATPIPRTIAMTFFGDLNHSTLNELPGGRRPIKSYVVPEYLPKYTTRAYEVMREHIHQGH 504 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS------IAIIHGRMSDIDKESVMDSF 537 + Y +CP+I V+E H+H + + I ++HG++ D DK++ M F Sbjct: 505 QIYIVCPRINGPG-----GVLE----THQHLSETEFKNYRIGLLHGQLKDADKDTTMRQF 555 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 NG +LIATTVIEVGIDV +A+II+I +E+ G++QLHQLRGRVGRG S C + Sbjct: 556 ANGDLDILIATTVIEVGIDVPNATIIMIRESENLGVSQLHQLRGRVGRGGYDSICFFHHT 615 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDS 654 + R+ + T DGF +AE DL QR EG++LG QSG + FL ++ Sbjct: 616 AERGTPADKRIWQMAATTDGFQVAEIDLIQRHEGDVLGTSQSGTNRKIAFLNLARDI--G 673 Query: 655 LLEIARKDAKHILTQDPDL 673 L+ A +DAK+I+ + DL Sbjct: 674 LINRANRDAKNIVAHNLDL 692 >gi|307329828|ref|ZP_07608983.1| ATP-dependent DNA helicase RecG [Streptomyces violaceusniger Tu 4113] gi|306884557|gb|EFN15588.1| ATP-dependent DNA helicase RecG [Streptomyces violaceusniger Tu 4113] Length = 736 Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 210/655 (32%), Positives = 338/655 (51%), Gaps = 61/655 (9%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGE 100 DLL ++P + +R ++S++ + VT+ ++ +F + R ++ + DG+G Sbjct: 29 DLLHHYPRRYAERGELTRLSDLPLDEHVTVVAQVADARVHTFNGGRGRRLEVTITDGSGR 88 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-------- 152 + L+FF + + G + GK+ + + HP + ++ Sbjct: 89 LQLVFFGKGVHKPRTELQPGTRAMFAGKVSVFNRKRQLAHPEFKALGAESGAEAVEAFAH 148 Query: 153 -----FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFN 207 +P + + S ++D + L L + + L + + ++ EA Sbjct: 149 QLLPLYPACKQMESWQIQQAIDTVLGPAGHEETALAGLVDPLPDSLREGRGLATLPEALR 208 Query: 208 IIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKIL 266 IH P D ARERL +DE Q+AL R+ + P V + Sbjct: 209 KIHRPATKTDIAM---ARERLKWDEAFVLQVALARRRRADAQLPAAPRKPVPDGLLTAFD 265 Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 +PF+ T Q ++I D++ + M R+LQG+VGSGKT+VAL AM V+AGGQA + Sbjct: 266 ARLPFTLTDGQRRVSEEIFADLATDHPMHRLLQGEVGSGKTMVALRAMLGVVDAGGQAAM 325 Query: 327 MAPIGILAQQHYEFIKKYT-------------QNTQIIVEIITGNMPQAHRRKALERIAH 373 +AP +LAQQH+ I + Q T+++ ++TG+M A RR+AL + Sbjct: 326 LAPTEVLAQQHHRSITEMMGELAEGGMLGGAEQGTKVV--LLTGSMGAAARRQALLDLVT 383 Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIP 432 G+A I+IGTHAL +D +Q+ L LV+VDEQHRFGV+QR L K PH+L+MTATPIP Sbjct: 384 GEAGIVIGTHALIEDKVQFNDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVMTATPIP 443 Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWI 488 RT+ +T GD++ S + + P+GR PI + ++P + ER++ ++ G + Y + Sbjct: 444 RTVAMTVFGDLETSVLDQLPSGRSPIASHVVPAKDKPHFLTRAWERVREEVAAGHQGYVV 503 Query: 489 CPQI--------------------EEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMS 526 CP+I +E ++ +VVE L + S + ++HGRM Sbjct: 504 CPRIGDDIGDEGETPKGAASPSPEDEAEKRPPLAVVEVAEQLTKGPLSGLRVEVLHGRMQ 563 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 K+ VM F G +L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQLRGRVGRG Sbjct: 564 PEAKDDVMRRFAAGEVDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRG 623 Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641 C+L+ P RL + T DGF ++ DL+QR+EG++LG QSG+ Sbjct: 624 SAAGLCLLVSDMPEGSPPRARLGAVAATLDGFELSRIDLEQRREGDVLGQAQSGV 678 >gi|262340925|ref|YP_003283780.1| ATP-dependent DNA helicase RecG [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272262|gb|ACY40170.1| ATP-dependent DNA helicase RecG [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 686 Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 235/676 (34%), Positives = 362/676 (53%), Gaps = 48/676 (7%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEER---IVTITGYISQHSSFQLQKRRPYKILLNDGTG 99 DLLF++P +I ISE+S+ V I G I+ +K + + L D TG Sbjct: 35 DLLFFYPKGYIHLPILKNISELSKNNNNNFVKILGEITNIEEINYKKGKIWIARLEDKTG 94 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159 I L++F +KT LKNV + I V+GK+K + +I M+HP+ + +P V Sbjct: 95 FIELVWF-QKTNFLKNVK-KNITIIVSGKVKCFQKKIQMIHPNIQYSEKNYSIYP----V 148 Query: 160 YSLPTGLSVDLFKKIIVEA--LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 YS+P L KK I + ++ L L E + D+ + + + N+ K K Sbjct: 149 YSIPRNLK----KKGINNSFMINLLKNLIEESKNDIEEFFFQEFLEKKLNV-----KKKS 199 Query: 218 FEWTSPARERLAYDELLAGQIALLL---------MRKQFKKEIGIPINVEGKIAQKILRN 268 F+ S +R + +L++ I + + K P GK + Sbjct: 200 FDSNSFSR---IFKQLISSTIFFKIEELFLLKLFFLSKRKTASSRPFPKLGKNFHNFYKY 256 Query: 269 -IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 +PF+ T+ Q+ +K+I D+ + +M R+LQG+VG GKT++A+++M A++ G Q+ +M Sbjct: 257 FLPFTLTEGQKKVLKEIWNDLKKPIQMNRLLQGEVGCGKTIIAILSMLIALDNGFQSCLM 316 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 AP +LA QHY IK+ I + ++T + + R+ I G+ I+IGTHAL Q Sbjct: 317 APTEVLAIQHYSSIKEMFSKIGIKIALLTSSTSDSIRKCLYHEIFTGKISILIGTHALIQ 376 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDIS 446 + +Q+ L L I+DE+ RFGV+QR K+ +K PH+L+MTATPIPRTL D++IS Sbjct: 377 EKVQFKNLGLAIIDEEQRFGVEQRAKIWKKEDKFPHILIMTATPIPRTLAKIIYHDLNIS 436 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE---EKKESN---- 499 I E P GRKP+KT+ D+ E +K +S+G++ Y I P I +KK N Sbjct: 437 IIKELPLGRKPVKTIHFWNQNRDKAFEIIKNQISKGRQVYIIYPTINTSLKKKNMNLTKG 496 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 ++ + E+F +L + I I+HG M+ +K M F G K+LIATTVIEVG++V + Sbjct: 497 YQEIKEKFKNLE----NKIGILHGEMNFQEKNIQMSRFLRGETKILIATTVIEVGVNVPN 552 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619 AS+I+IENA+ FGL+QLHQLRGRVGRG S CIL+ +S + R+ + T +G Sbjct: 553 ASVILIENADFFGLSQLHQLRGRVGRGIHQSYCILITDQKISIEGFFRIKKMCETNEGLE 612 Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679 IA+EDLK R G+++G +QSG I L++ AK+ ++PD Sbjct: 613 IAKEDLKLRGGGDLIGTQQSGKNYLRIVNLIKDYKLIKDVFPIAKNFFIKNPDFLK---N 669 Query: 680 SIRILLYLYQYNEAFQ 695 + I Y+ NE F+ Sbjct: 670 TKNIFYKNYKMNEKFK 685 >gi|315653368|ref|ZP_07906290.1| DNA helicase RecG [Lactobacillus iners ATCC 55195] gi|315489293|gb|EFU78933.1| DNA helicase RecG [Lactobacillus iners ATCC 55195] Length = 673 Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 225/700 (32%), Positives = 367/700 (52%), Gaps = 45/700 (6%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 L L P+S GVG K + LS++ DLLFY P + P ++E+ Sbjct: 6 LKVLLNPVSDLDGVGVKTAEALSQL------KIKTIYDLLFYFPRRYDSLETFP-LNELK 58 Query: 66 EERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + + V + G I S + R +K+ ++ +I ++ F+ + LK +G Sbjct: 59 DGQKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDH---DIIMVNFFNQP-WLKKQLQKGN 114 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI------EAVYSLPTGLSVDLFKKII 175 I + GK Y+ + + ++ E VYSL + + I Sbjct: 115 DIAIYGK--------------YVLASQTLSAYKIVLKEEGFEPVYSLNSHIKQKKLVSFI 160 Query: 176 VEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234 +A+ + LP LPE I + L K + +H P KD + A+ + E Sbjct: 161 SQAIEKYLPQLPEVIPQYLRDKYKLLDVKSMIIQMHQP---KDLQQVKIAQRTAIFLEFF 217 Query: 235 AGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 Q+ L L+ +K GI + ++ +I F + Q AI +IL D++ R Sbjct: 218 VFQLQLSQLLYANDQKNNGIAKKYDSSAINELKESINFQLSDDQIQAINEILADLASAKR 277 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R+LQGDVGSGKT+VA+ A+ A + AG Q +M P ILAQQH I + + Sbjct: 278 MNRLLQGDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCA 337 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++T + +++ + G +++IGTHA+ QD + + KL LVI+DEQHRFGV QR + Sbjct: 338 LLTSSTKLNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQ 397 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 L K +L M+ATPIPRTL L+ G+ +S+I + P GRK + + I + + +++ Sbjct: 398 LLNKGKMVDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLT 457 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKES 532 + L +G + Y + P I E + + ++ + + +F S +A++HG+M+ K Sbjct: 458 LMNEQLEQGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMASSQKSD 517 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +MD+F +G+ K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG S C Sbjct: 518 IMDAFIHGSIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGSTQSYC 577 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 I + P + N+ RL ++ +DGF +A EDLK R EG+I G QSG+P+F + + Sbjct: 578 IFVSDPK-TDNAKKRLKIISTCDDGFALAREDLKLRGEGDIFGQAQSGIPQFKLGDIINN 636 Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692 ++ A+K++K ++ Q+P+L G+ L L +Y++ Sbjct: 637 YNIFTTAQKESKVLVNQNPELV---GEEYDFLKLLMEYDD 673 >gi|54026165|ref|YP_120407.1| ATP-dependent DNA helicase RecG [Nocardia farcinica IFM 10152] gi|54017673|dbj|BAD59043.1| putative ATP-dependent DNA helicase [Nocardia farcinica IFM 10152] Length = 755 Score = 334 bits (856), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 217/672 (32%), Positives = 354/672 (52%), Gaps = 80/672 (11%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERI-VTITGYISQHSSFQLQKRRP--YKILLNDGTG 99 DLL ++P + + +P E E+ +T+ G I++ ++ RR K+ L+ G+G Sbjct: 31 DLLRHYPLRYATQG-QPLTEEAPEDGSHITVIGRIAKTELRPMRNRRGSLLKVQLDTGSG 89 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK-NRIIMVHPHYIF------------- 145 + F+ + +K V +G + ++G + + + HP Y+ Sbjct: 90 RPVDVTFF-NGDKVKYVVKQGLRAMMSGNVSYWRPGSWSLSHPGYLILPETEDESVGTMT 148 Query: 146 -----------------HNSQDVNFPLIEAVYSLPTGLSVDLFK--KIIVEALSRLPVLP 186 DV+F E + P V + + + L +L + Sbjct: 149 RVRGGGDLRGLAESAKGAAGVDVSFMSREFIPVYPATAKVQSWDLLACVRQVLEQLDPID 208 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 + + +D+ +++ +++A +IH P D + AR+RL +DE LA Q+ L R + Sbjct: 209 DPLPQDIREERGLLPVSDALRLIHLPEHRADIDR---ARDRLRFDEALALQLVLAERRHE 265 Query: 247 FKKEIG--IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 P +G IA +PF T Q+ I +I D+++ + M R+LQG+VGS Sbjct: 266 VSGRTARPCPPRADG-IAAAFAERLPFELTAGQQKVIGEISADLARTHPMHRLLQGEVGS 324 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI---------- 354 GKT+VAL AM V+AG Q ++AP +LA QHY + E+ Sbjct: 325 GKTIVALHAMLQVVDAGQQCALLAPTEVLAAQHYRSLTAMLGELGTAGELGAAEHATRVV 384 Query: 355 -ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 +TG+M + ++ AL G+A I+IGTHAL QD+++++ L +VIVDEQHRFGV+QR Sbjct: 385 LVTGSMSASAKKAALLAAVTGEAGIVIGTHALIQDNVEFFDLGMVIVDEQHRFGVEQRDA 444 Query: 414 LTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP----IN 466 L KA A PH+L+MTATPIPRT+ +T+LGD++ S +TE P GR PI + ++P N Sbjct: 445 LRAKAKAGASPHLLVMTATPIPRTIAMTTLGDLETSTLTELPRGRSPITSKVVPRKLHPN 504 Query: 467 RIDEVIERLKVVLSEGKKAYWICPQI----------------EEKKESNFRSVVERFNSL 510 +D ER+ + +G++AY +C +I EEK+ ++V++ F L Sbjct: 505 WVDRAWERILEEVGQGRQAYVVCSRIGDDEEGGRTAKGRKAAEEKEPPPTQAVLDVFEML 564 Query: 511 HEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 +S+ ++HGR+ +K+ VM +F G +L+ TTV+EVG+DV +A++++I +A Sbjct: 565 RHGPLASVRVGLLHGRLPADEKDEVMRAFHEGAVDVLVCTTVVEVGVDVPNATVMVIVDA 624 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628 + FG++QLHQLRGR+GRG C+L+ ++ TRL + T DGF +A DL+QR Sbjct: 625 DRFGVSQLHQLRGRIGRGAHPGLCLLVTDAAPGGSAMTRLEAVAATNDGFELAVLDLRQR 684 Query: 629 KEGEILGIKQSG 640 +EG++LG QSG Sbjct: 685 REGDVLGSAQSG 696 >gi|315502398|ref|YP_004081285.1| ATP-dependent DNA helicase recg [Micromonospora sp. L5] gi|315409017|gb|ADU07134.1| ATP-dependent DNA helicase RecG [Micromonospora sp. L5] Length = 733 Score = 333 bits (854), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 220/706 (31%), Positives = 367/706 (51%), Gaps = 62/706 (8%) Query: 19 VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78 VG++ + L+ ++ A DL+++ P + +R I + VT+ + + Sbjct: 16 VGERTAKALAGHLDLHTAG-----DLIYHFPRRYDERGEHTDIRSLDVGEQVTVLAQVQR 70 Query: 79 HSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 + +++RR ++ + DG+G + F+ + GR GK+ + + + Sbjct: 71 TAVRPMRQRRGNLLEVTVGDGSGGVLTCTFFGNQAWRERELRPGRWGLFAGKVTEFRGKR 130 Query: 137 IMVHPHYIF---------------HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + P Y+ P+ A ++PT + + ++ Sbjct: 131 QLNGPEYVLLGEGGEGEAAANEEVEEFAGALIPVYPAAAAVPTWVIARCVRVVLDTFTPP 190 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 LP + ++ I A IH P E AR RL +DE A Q+ L+ Sbjct: 191 EDPLPATVRA----TRNLADIGTALREIHRPTSK---EALYRARRRLKWDEAFAVQLTLV 243 Query: 242 LMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 +++ G + G + +P+ T Q+ ++I D+++ + M R+LQG Sbjct: 244 QRKQRAAASPGRARPAKAGGLLDAFDARLPYELTSGQQVVGREIAADLARPHPMHRLLQG 303 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI-----------KKYTQNTQ 349 +VGSGKT+VAL AM V+AGGQA ++AP +LA QH+ I + + Sbjct: 304 EVGSGKTVVALRAMLQVVDAGGQAALLAPTEVLAAQHHRGILDLLGPLGRAGELGAADDA 363 Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409 VE++TG++ A RR+AL +A G+A I++GTHAL + + ++ L LV+VDEQHRFGV+ Sbjct: 364 TRVELVTGSLGAAARRRALAEVAEGRAGIVLGTHALLYEGVDFHDLGLVVVDEQHRFGVE 423 Query: 410 QRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467 QR L KA PHVL+MTATPIPRT+ +T GD++ S +++ P GR PI + ++P Sbjct: 424 QRDALRAKAEQPPHVLVMTATPIPRTVAMTVYGDLETSTLSQLPQGRSPIASHVVPAAEK 483 Query: 468 ---IDEVIERLKVVLSEGKKAYWICPQIEE---------KKESNFR----SVVERFNSLH 511 +D RL+ +++G +AY +CP+I E +++ N R +V E L Sbjct: 484 PAFLDRAWRRLREEVTKGHQAYVVCPRIGEGPVSDEEPPREDDNGRRPPLAVTEVAPLLA 543 Query: 512 EHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 E I ++HGR+ +K++VM ++ +G +L+ATTV+EVG++V +A+++I+ +A+ Sbjct: 544 EGPLHGLRIGVLHGRLPADEKDAVMRAYADGELDVLVATTVVEVGVNVPNATVMIVLDAD 603 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629 FG++QLHQLRGRVGRG C+L+ ++ RL + +T DGF +AE DL+QR+ Sbjct: 604 RFGVSQLHQLRGRVGRGSAAGLCLLVTEAAEGSSARERLDAVASTTDGFKLAELDLEQRR 663 Query: 630 EGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLT 674 EG++LG QSG L L D+ L+ AR +A ++ DPDL+ Sbjct: 664 EGDVLGATQSGRRSHLRLLSLLRDTELIRDARAEAIELVEDDPDLS 709 >gi|94985241|ref|YP_604605.1| ATP-dependent DNA helicase RecG [Deinococcus geothermalis DSM 11300] gi|94555522|gb|ABF45436.1| ATP-dependent DNA helicase RecG [Deinococcus geothermalis DSM 11300] Length = 776 Score = 333 bits (854), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 217/665 (32%), Positives = 355/665 (53%), Gaps = 25/665 (3%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILL-------N 95 D+L +P DR P ++ + E + VT+ G + + +R+P LL Sbjct: 126 DVLHAYPHRHEDRRALPDLAAVEEGQKVTVEGRVVTKA-----RRKPKPNLLIVEATLET 180 Query: 96 DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM--VHPHYIFHNSQDVNF 153 G + +F + ++ EG ++ +TG++K+ + + H + + ++ Sbjct: 181 PAGGRVRASWFNQP--WVERQLREGARLVLTGRVKRFGRTVQLGVEHLETLEDARESLST 238 Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213 I VY G+S + +++ AL P L +++ +++ +A+A IH P Sbjct: 239 GRIVGVYDSKEGISQEFLRRVAFRALQAAP-LDDYLPAHWRRERGLTDLADALWGIHFPA 297 Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 + A RL +DE L ++ +LL + + +G G+ ++ +PF Sbjct: 298 GEAQLKR---ALHRLRFDEYLFLELRMLL-QGEDAVLLGKRFQATGEDIERFEAALPFRL 353 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T +Q + +I+ DM + +M R++QGDVGSGKT VA A+ AV G Q +MAP IL Sbjct: 354 TGAQRRVLLEIVADMRSERQMARLVQGDVGSGKTAVAAAALYLAVRDGYQGALMAPTEIL 413 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QHY + Y + V ++ G M + + RIA G +++GT AL Q+++++ Sbjct: 414 ARQHYANLLGYLAKLDVRVGLLIGAMTPKAKLEMQTRIAEGDVDVVVGTQALIQENVRFN 473 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L L +VDE+HRFGV QR +L P VL+M+ATPIPR+L LT+ GD+++S I E P Sbjct: 474 NLGLAVVDEEHRFGVMQRRRLL--TGRPDVLVMSATPIPRSLALTAYGDLELSVIDELPP 531 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 GR P++T +I + + + EG++AY + IE+ + + + + L Sbjct: 532 GRTPVETKLIQDTHRQQAYGFVMRQIREGRQAYVVTALIEQNENLELLAATQLADDLRVL 591 Query: 514 FTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 + I ++HGRM+ +K+ VM+ F+ +L++TTVIEVG+DV +A++++IENAE FG Sbjct: 592 LPEARIELLHGRMTAAEKDLVMERFRAREFDVLVSTTVIEVGVDVPNATVMVIENAERFG 651 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 L+QLHQLRGRVGRG S CIL+ S + RL +++ + DGF+IAE DLK R GE Sbjct: 652 LSQLHQLRGRVGRGSAQSYCILIAGEH-SNKTRQRLKIIEGSTDGFVIAEADLKLRGPGE 710 Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692 + G +QSG+P + ++E AR AKHIL DP L R + +R L + Sbjct: 711 LRGTRQSGIPDLRLGDLASDIEIIEQARALAKHILAHDPKLEHPRLRGLRQELQSRSQSV 770 Query: 693 AFQFI 697 AF+ + Sbjct: 771 AFREV 775 >gi|302344077|ref|YP_003808606.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM 2075] gi|301640690|gb|ADK86012.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM 2075] Length = 702 Score = 333 bits (854), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 230/709 (32%), Positives = 360/709 (50%), Gaps = 36/709 (5%) Query: 3 PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETR-FIDLLFYHPSSFIDRHYRPKI 61 P L L L GVG K L+ A R + D LF+ P + DR + Sbjct: 11 PWALPALARSLGALPGVGPKTVQALA-------ARGLRTWGDGLFFLPPRYEDRRRVWPL 63 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + E R+ G ++ + ++ + ++++L+DG G + LL+F+ K L+ F GR Sbjct: 64 DGLEEGRLCVARGRLTSSGPWG-RRGKVWRMVLDDGAGRLNLLWFHFKKAHLE-AFAVGR 121 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 ++ G+ + + MVHP ++ +I VY L ++ + + Sbjct: 122 EVFAVGRAELAEGGWRMVHPEVFDEQKAAEGRAVGVILPVYPELASLGQGGVRRFMADLA 181 Query: 180 SR-LPVLPEWIEKDLLQKKSFP-SIAEAFNIIHNPRKAKDFEW----TSPARERLAYDEL 233 R + ++P+ + LL + +P S+++A H P D TS R LA +EL Sbjct: 182 GRTVDLIPDPL-FGLLPARLYPCSVSQALRQAHLPGPESDPAELDPPTSAWRRVLAVNEL 240 Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 Q+ L L R+Q G+ ++ G + ++ L +PF+ T+ Q A+ IL DM+ Sbjct: 241 FYYQLGLWLKRRQRLSRPGLVVDPPGALVERFLAALPFALTEGQNQALAAILADMASGRP 300 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R+L GDVGSGKT+VAL A AA EAG Q +MAP +LA+QH + + + Sbjct: 301 MGRLLAGDVGSGKTVVALAAAAAVAEAGAQTALMAPTEVLARQHLASAQALLEPLGLKAA 360 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++ G A +K A G A ++IGT A+ +++ +L LVI+DEQ RFGV QRL+ Sbjct: 361 LVLGGA-DAQGQKQARAAAQGGAALLIGTQAMLAARLEFERLGLVIIDEQQRFGVHQRLR 419 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 L K PH+L+++ATPIPRT+ L G +DIS + + P R I T ++ + + +E Sbjct: 420 LAAKGLDPHLLVLSATPIPRTMALALAGHLDISPLPQLPGRRPKIATTVLAFEQRRQAVE 479 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532 + L+ G++ Y ICP +E + VE L E+F +I ++HGR+ ++ Sbjct: 480 AMAATLAAGEQVYVICPLVEASDKIQAHDAVETHRRLGEYFPGQAIGLLHGRLDSAAQQR 539 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 ++ F+ G + L+ATTV+EVG+DV A+++I+ AE FGL QLHQLRGRVGRG++ C Sbjct: 540 ALEDFRAGQTRALVATTVVEVGLDVPAATLMIVLGAERFGLCQLHQLRGRVGRGQKPGRC 599 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ---- 648 L+ P + RL VL T DG +AE DL R G+ LG Q+G+P A Sbjct: 600 CLVTGPEPGELGRRRLEVLAATADGLAVAEADLAMRGPGQALGAGQAGLPPLRFAGEVDL 659 Query: 649 -PELH---DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693 PE+ D L R D D L ++ +++R L + EA Sbjct: 660 LPEVSRAVDGLFGQGRPD-------DEPLAALVAEAVRRWGRLMELVEA 701 >gi|237739914|ref|ZP_04570395.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 2_1_31] gi|229423522|gb|EEO38569.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 2_1_31] Length = 679 Score = 333 bits (853), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 226/622 (36%), Positives = 343/622 (55%), Gaps = 17/622 (2%) Query: 29 KIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRR 88 +++N + DL++Y P ++ +R I +++ V + S S + R Sbjct: 13 QVVNLKSLGIDTIYDLIYYFPRAYDNRSNVKNIGDLTFNEYVVVKA--SVMSVLNMPNRS 70 Query: 89 PYKI---LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF 145 KI ++ DGTG + +L+F + G + G+ KK N ++P Y Sbjct: 71 GKKIVKAMITDGTGIMEVLWF--GMPYISKSLKVGEEYIFIGQTKK-SNLFQFINPEYKL 127 Query: 146 HNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIA 203 + Q+ I +YS ++ + +KII + L L E I DL+ K + I Sbjct: 128 YKGQEKETAKEILPIYSSNKSITQNNLRKIIKKFLENFLKYFEENIPNDLV--KGYKEIF 185 Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI-- 261 E I N + + A R A +ELL ++ +L R +EGK Sbjct: 186 ERTQAIKNIHFPESVQAIEAANLRFATEELLILELGILKNRFIIDSLNTKKYEIEGKKEK 245 Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321 +K L +PF T++Q+ IK+I ++S + R++QGDVGSGKT VA + + E G Sbjct: 246 VKKFLELLPFELTRAQKKVIKEIYDEISDGKIVNRLVQGDVGSGKTAVATVMLIYMAENG 305 Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q +MAP ILA QHY +K+ + + V ++T ++ + + LE IA+G I+IG Sbjct: 306 YQGALMAPTEILANQHYLGMKERLEKIGLRVGLLTSSIKGKKKTEILEAIANGDIDIVIG 365 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH+L +D++ + KL L+++DEQHRFGV QR KL +K ++L+MTATPIPR+L L+ G Sbjct: 366 THSLIEDNVVFKKLGLIVIDEQHRFGVNQRNKLREKGFLGNLLVMTATPIPRSLALSIYG 425 Query: 442 DIDISKITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500 D+D+S I E P GR PIKT I ++ + + + + ++ G +AY++ P IE + Sbjct: 426 DLDLSIIDELPPGRTPIKTKWIANDKDLSIMYDFIYKKVNSGNQAYFVAPLIETSDKMAL 485 Query: 501 RSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 +SV + + F+ I IIHG+M +K+ VM FKN +LIATTVIEVGIDV Sbjct: 486 KSVDKVSEEIERRFSDKKIGIIHGKMKAKEKDEVMLKFKNKEYDILIATTVIEVGIDVPA 545 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619 ++I+ I NAE FGL+ LHQLRGRVGRG + S C L+ ++NS RLS+++ TEDGF+ Sbjct: 546 STIMTIYNAERFGLSALHQLRGRVGRGSKQSYCFLISEST-TENSKQRLSIMEKTEDGFV 604 Query: 620 IAEEDLKQRKEGEILGIKQSGM 641 IAEEDLK R GEI G++QSG Sbjct: 605 IAEEDLKLRNSGEIFGLRQSGF 626 >gi|257457590|ref|ZP_05622757.1| ATP-dependent DNA helicase RecG [Treponema vincentii ATCC 35580] gi|257444976|gb|EEV20052.1| ATP-dependent DNA helicase RecG [Treponema vincentii ATCC 35580] Length = 641 Score = 333 bits (853), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 176/420 (41%), Positives = 260/420 (61%), Gaps = 7/420 (1%) Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324 ILR +PF+ T Q++ +I D+ R++QGDVGSGKTLVA +A +E GGQA Sbjct: 218 ILR-LPFTLTADQQAVTAEINADLDGTAPAARLIQGDVGSGKTLVAFLACLKVIEGGGQA 276 Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384 V+MAP +LA+QH + K + + + +TGN+ A R + L+++A G +IIGTHA Sbjct: 277 VLMAPTELLARQHADNAAKLLEPLGVRLAFLTGNLKAAGRSQLLQQLASGNIDLIIGTHA 336 Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-----TAPHVLLMTATPIPRTLVLTS 439 LF Y L +V++DEQHRFGV QR + QK APH L+M+ATPIPRTL L+ Sbjct: 337 LFSAQTLYKNLRMVVIDEQHRFGVLQRSAIIQKGIDSGKKAPHFLMMSATPIPRTLALSM 396 Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499 GD+DIS I P GRKP+ T + P ++ ++V + + GK+AY++ P IE+ + + Sbjct: 397 FGDLDISVIKTMPPGRKPVITYVAPESKAEKVYYFIGQDILAGKQAYFVYPIIEDSETLS 456 Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +S + F L F +A++H ++ + + ++M F+ G +L+AT+VIEVG+DV Sbjct: 457 LKSAEDMFAELSRDFPHHRLALLHSKVPEDEARAIMQEFRAGAIHILVATSVIEVGVDVP 516 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618 +A+ ++IE+A+ FGL+ LHQLRGR+GRG + + C LLY +++ RL V+ +T DGF Sbjct: 517 NATCMVIEHADRFGLSALHQLRGRIGRGSDQAYCFLLYGKNITETGKARLKVMASTTDGF 576 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +IAEEDLK R G+I G++QSG F + P +LLE AR A +L LT G Sbjct: 577 VIAEEDLKLRGPGDIGGVEQSGYCGFELGDPIRDFALLEKARAAAFEMLAAQRGLTQHEG 636 >gi|294782998|ref|ZP_06748322.1| ATP-dependent DNA helicase RecG [Fusobacterium sp. 1_1_41FAA] gi|294479876|gb|EFG27653.1| ATP-dependent DNA helicase RecG [Fusobacterium sp. 1_1_41FAA] Length = 690 Score = 333 bits (853), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 224/608 (36%), Positives = 338/608 (55%), Gaps = 17/608 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKI---LLNDGTG 99 DL++Y P ++ +R I +++ V + S S + R KI ++ DGTG Sbjct: 38 DLIYYFPRAYDNRSNVKNIGDLTFNEYVVVKA--SVMSVLNMPNRSGKKIVKAMVTDGTG 95 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEA 158 + +L+F + G + G+ KK N ++P Y + Q+ I Sbjct: 96 IMEVLWF--GMPYISKSLKVGEEYIFIGQTKK-SNLFQFINPEYKLYKGQEKETAEEILP 152 Query: 159 VYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 +YS ++ + +KII + L L E I DL+ K + I E I N + Sbjct: 153 IYSSNKSITQNTLRKIIKKFLENFLKYFEENIPNDLV--KGYKEIFERTQAIKNIHFPES 210 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI--AQKILRNIPFSPTK 275 + A R A +ELL ++ +L R +EGK +K L +PF T+ Sbjct: 211 VQAIEAANLRFATEELLILELGILKNRFIIDSLNTKKYEIEGKKEKVKKFLELLPFELTR 270 Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 +Q+ IK+I ++S + R++QGDVGSGKT VA + + E G Q +MAP ILA Sbjct: 271 AQKKVIKEIYDEISDGKIVNRLVQGDVGSGKTAVATVMLIYMAENGYQGALMAPTEILAN 330 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 QHY +K+ + + V ++T ++ + + LE I++G I+IGTH+L +D++ + KL Sbjct: 331 QHYLGMKERLEKIGLRVGLLTSSIKGKKKTEILEAISNGDIDIVIGTHSLIEDNVVFKKL 390 Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 L+++DEQHRFGV QR KL +K ++L+MTATPIPR+L L+ GD+D+S I E P GR Sbjct: 391 GLIVIDEQHRFGVNQRNKLREKGFLGNLLVMTATPIPRSLALSIYGDLDLSIIDELPPGR 450 Query: 456 KPIKTVIIPINR-IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 PIKT I ++ + + + + ++ G +AY++ P IE + +SV + + F Sbjct: 451 TPIKTKWIANDKDLSIMYDFIYKKVNSGNQAYFVAPLIETSDKMALKSVDKVSEEIERRF 510 Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 + I IIHG+M +K+ VM FKN +LIATTVIEVGIDV ++I+ I NAE FGL Sbjct: 511 SDKKIGIIHGKMKAKEKDEVMLKFKNKEYDILIATTVIEVGIDVPASTIMTIYNAERFGL 570 Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633 + LHQLRGRVGRG + S C L+ ++NS RLS+++ TEDGF+IAEEDLK R GEI Sbjct: 571 SALHQLRGRVGRGSKQSYCFLI-SESTTENSKQRLSIMEKTEDGFIIAEEDLKLRNSGEI 629 Query: 634 LGIKQSGM 641 G++QSG Sbjct: 630 FGLRQSGF 637 >gi|225621185|ref|YP_002722443.1| RecG-like DNA helicase [Brachyspira hyodysenteriae WA1] gi|225216005|gb|ACN84739.1| RecG-like DNA helicase [Brachyspira hyodysenteriae WA1] Length = 696 Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 235/698 (33%), Positives = 360/698 (51%), Gaps = 55/698 (7%) Query: 17 RGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITG 74 +GVG KY+ L+K II DL+ + P ++ DR K+ E E + T Sbjct: 19 KGVGPKYAEILAKKGIIT--------LYDLIAFFPRTYDDRRKTLKLHEALENKDKTSVV 70 Query: 75 YIS--QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK-IKK 131 Y+ SSF Q + +++ DG + + + L +G K+ +TGK I+ Sbjct: 71 YVEVIDVSSFTFQYKNKPLVIVTDGIAICEVPIYGGR---LPAGVSKGAKLYLTGKFIRS 127 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-----LP 186 + ++ + +S +++ I +Y L GLS + +IV+ L +P Sbjct: 128 GRGKLQCRMTEFEKPSSNALSYGKIVPIYPLTEGLSQKKLRTLIVDELVGFEKNMKYDIP 187 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 I+K K PSI E +H P FE + ARE L ++E L Q L R+ Sbjct: 188 SVIKKKYRLKSFVPSIME----MHFP---TSFEALAEARESLIFEEFLTFQYIHLSERRP 240 Query: 247 FKKEIGIPINVEGKIAQKILRNI----PFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 I I E + +L N+ F T Q AI++I D+ +M R+LQGDV Sbjct: 241 -----NILIKEERYNSANLLDNVKSSLSFELTSDQLDAIEEIKNDLFSNKQMFRLLQGDV 295 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ----NTQIIVEIITGN 358 G+GKT+VA + E+G Q +AP ILA QHY KK + I ++I+T + Sbjct: 296 GAGKTIVAFLTALIPAESGFQTAFLAPTEILALQHYNTFKKLIKAAGLEDTIKIDILTSS 355 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + Q R L+R+ G+++I++GTH++ D + + L IVDEQ RFG QR KL K Sbjct: 356 VNQNERGYLLKRLREGKSYILVGTHSIIYDEVIFKNLSYAIVDEQQRFGAAQRNKLLSKG 415 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 LLMTATPIP++L LT G++D+S I P+ RK + T + D + LK Sbjct: 416 ENVDFLLMTATPIPQSLALTLFGELDLSIIKSMPSSRKGVLTKYKELYERDHCYKFLKSR 475 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDS 536 +++G++ Y + P IE +S+F ++ F E + S I I IHG+M D +KE +M+ Sbjct: 476 IAKGEQGYVVFPLIE-NNDSSFITLSSEFQRAKETYFSDIQIEVIHGKMKDEEKEYIMNR 534 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F +G K+L +TTVIEVGID +A+ I+IE AE FGL+QLHQLRGRVGRG+++ C L+ Sbjct: 535 FSSGEIKVLFSTTVIEVGIDNPNATTILIEGAERFGLSQLHQLRGRVGRGDKLGYCYLIL 594 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656 H L+ R++++ T DGF I+E+DL+ R GE LG +QSG+P F + ++ Sbjct: 595 HSELNDIIKERINIICETTDGFKISEKDLELRGAGEFLGDRQSGIPDFKLGNIIKDKEIM 654 Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694 A+ + + +L + + Y+ NEAF Sbjct: 655 RKAKDEMRSLLRDENSREA-----------FYKENEAF 681 >gi|262203090|ref|YP_003274298.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247] gi|262086437|gb|ACY22405.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM 43247] Length = 752 Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 207/670 (30%), Positives = 344/670 (51%), Gaps = 78/670 (11%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEE-RIVTITGYISQHSSFQLQKRRPY--KILLNDGTG 99 +LL Y P ++ R + +E+ E +TI G I++ ++KR + K+ + D Sbjct: 30 ELLHYTPRRYV-RQGQVSEAELPEAGEYLTIVGRITKADMIPMRKRSGHFLKVTVTDEAR 88 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD------VNF 153 FF + ++ G ++ + G +K + +I + HP ++ D V Sbjct: 89 TYEATFFNPR--FIRTKLKPGARVMMAGTVKFFREQIQLSHPEWMVLPDGDPEVDRVVGS 146 Query: 154 PLIEAVYSLPTGLSVDL----------FKKIIV-------------------EALSRLPV 184 ++ +Y++ L+ D F + I+ L+ P Sbjct: 147 AMLTEMYAVEAELTDDQDGAGADFLAQFDRPIIPMYPATRDIQTWDIWGAVRRVLAHRPQ 206 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 + + + ++ + AEA IH P D + A RL +DE LA Q L R Sbjct: 207 TADALSEADRNRRGLITTAEAIEKIHLPETDDDI---TAASARLKFDEALAIQTVLAQRR 263 Query: 245 KQFKKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 + E +V G + ++ + +PF T Q + + ++ +D++Q M R+LQG+VG Sbjct: 264 LAGRNESAAACPHVPGGLEDRLAQRLPFELTAGQRTVVGELGEDLAQNRPMSRLLQGEVG 323 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIV 352 SGKTLV+L+AM V+ G Q I+AP +LA QHY ++ + Sbjct: 324 SGKTLVSLLAMLRVVDNGHQCAILAPTEVLAAQHYRTMRTMLGDLAEAGELSAAEGATSI 383 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 ++TG+M +R+ L + G A I++GTHAL +++++++ L +V+VDEQHRFGV+QR Sbjct: 384 ALLTGSMKTKGKRQTLLDVVTGTAGIVVGTHALLEENVEFFDLGMVVVDEQHRFGVEQRD 443 Query: 413 KL---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-- 467 L + PH L+MTATPIPRT+ +T+ GD+D S + E P GR+PI T ++P+ Sbjct: 444 VLRGRGRDGVMPHFLVMTATPIPRTVAMTAFGDLDTSVLRELPLGRQPITTNVVPMGNER 503 Query: 468 -IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR--------------SVVERFNSLHE 512 ++ V R ++ G++ Y +C +I E+ SV++++ +L Sbjct: 504 WVERVWSRADEEIAAGRQVYVVCSRIGGDDETGGGKSGAAKNPEALKTISVLDQYEALLA 563 Query: 513 HFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 I ++HGR+ +K VMD+F G +L+ATTVIEVG+DV +A++++I +AE Sbjct: 564 GPLGGHRIGLLHGRLPADEKNEVMDAFGRGELDILVATTVIEVGVDVPNATMMVIVDAER 623 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630 FG++QLHQLRGRVGRG+ C+L+ P S RL+ + + DGF +A DL+QR+E Sbjct: 624 FGVSQLHQLRGRVGRGKHAGLCLLMTSAPQVSQSMQRLTAVAGSNDGFELARVDLQQRRE 683 Query: 631 GEILGIKQSG 640 G++LG QSG Sbjct: 684 GDVLGSLQSG 693 >gi|223986081|ref|ZP_03636107.1| hypothetical protein HOLDEFILI_03415 [Holdemania filiformis DSM 12042] gi|223961954|gb|EEF66440.1| hypothetical protein HOLDEFILI_03415 [Holdemania filiformis DSM 12042] Length = 672 Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 217/586 (37%), Positives = 334/586 (56%), Gaps = 35/586 (5%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKII--- 175 G+++TV G + N+I +NSQ + L + VY L G++ + ++II Sbjct: 103 GQRVTVIGYYQG-GNKITATT-----YNSQPLQEQLGVTPVYPLKEGMTQKMMQEIIKKT 156 Query: 176 -VEALSRLP-VLPEWIEKD--LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231 + A S + ++P ++ LL KK+ A +H PR + A L Y+ Sbjct: 157 FITAQSHIEELVPPSLQAQYRLLPKKT------ALRCLHFPRS---MDEVYQATRTLKYE 207 Query: 232 ELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290 E L + L ++ R+Q + + + + ++ F+ T Q A++DIL DM Sbjct: 208 EFLKFHLVLEMIHRQQTETVTKKAKQFDAEQVYALANHLSFAMTPDQFKAVRDILADMGS 267 Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350 M R++QGDVG GKTLVA +A+ A V +G Q IMAP ILA+QH +KK I Sbjct: 268 DKIMYRLIQGDVGCGKTLVASLALYACVLSGHQGAIMAPTEILARQHAVSLKKLFAGLPI 327 Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410 ++++ ++P A +++ L+ + G +++ GTHALFQ +++ KL LV+ DEQHRFGV+Q Sbjct: 328 KIDVLCSSLPSAKKKEVLQAMKDGTLNLVAGTHALFQKEVEFAKLGLVVADEQHRFGVEQ 387 Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470 R L +K LLM+ATPIPRTL T GD+DIS I P GRKPI+T ++ N + Sbjct: 388 RRALKEKGEKVDFLLMSATPIPRTLAATLYGDMDISTIMTMPPGRKPIQTRLVEENSLRT 447 Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDI 528 ++ +L L +G + Y +C IEE + + R+V++ F SL E F+ + + ++HGRMS Sbjct: 448 IMPQLLDQLEQGGQIYIVCSAIEENENFDGRNVLDIFESLSEVFSGKAKLGLMHGRMSSE 507 Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588 +KE M F+ T ++L++TTVIEVG++VV+A ++I +A FGL+QLHQLRGRVGRG Sbjct: 508 EKERAMFDFEANTTQILVSTTVIEVGVNVVNACCMVIYDAHRFGLSQLHQLRGRVGRGRR 567 Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648 C LL S RL +++ T DGF IA +DL+QR GE+LG +QSG+P ++ Sbjct: 568 QGYCFLLTASK-DPESLARLKIMEQTTDGFEIAMKDLEQRGPGELLGTRQSGVPGLILGD 626 Query: 649 PELHDSLLEIARKDAKHILTQDPD-------LTSVRGQSIRILLYL 687 +++ AR+DA IL DPD LT +R ++ + Y+ Sbjct: 627 LVADTKIIQTARQDAVRILN-DPDNAEFQSLLTKIRKENESAISYM 671 >gi|121638855|ref|YP_979079.1| ATP-dependent DNA helicase RecG [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224991347|ref|YP_002646036.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str. Tokyo 172] gi|121494503|emb|CAL72984.1| Probable atp-dependent dna helicase recG [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224774462|dbj|BAH27268.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str. Tokyo 172] Length = 737 Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 224/659 (33%), Positives = 352/659 (53%), Gaps = 68/659 (10%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEE--RIVTITGYISQHSSFQLQK---RRPYKILLNDG 97 DLL ++P S+++ R I + E +TI I+ SF ++K R+ +I + G Sbjct: 31 DLLRHYPRSYVEGAARVGIGDARPEAGEHITIVDVITDTYSFPMKKKPNRKCLRITVGGG 90 Query: 98 TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157 ++T FF + + + K+ ++G++ K + + HP ++ +S D Sbjct: 91 RNKVTATFF--NADYIMRDLTKHTKVMLSGEVGYYKGAMQLTHPAFLILDSPDGKNHGTR 148 Query: 158 AVYSLPTGLSVDLFKKIIVEALSR--LPVLP------EW-IEK------DLLQKKSFPSI 202 ++ S+ S + +++VE R P+ P W I K D+L + P Sbjct: 149 SLKSIADA-SKAISGELVVEEFERRFFPIYPASTKVQSWDIFKCVRQVLDVLDRVDDPLP 207 Query: 203 AE------------AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 AE A IH A+ ARERL +DE + Q AL+ R E Sbjct: 208 AELRAKHGLIPEDEALRAIH---LAESQSLRERARERLTFDEAVGLQWALVARRHGELSE 264 Query: 251 IGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML-RILQGDVGSGKTL 308 G + +A ++LR +PF T Q + D+L D NR L R+LQG+VGSGKT+ Sbjct: 265 SGPSAAWKSNGLAAELLRRLPFELTAGQREVL-DVLSDGLAANRPLNRLLQGEVGSGKTI 323 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITG 357 VA++AM V+AG Q ++AP +LA QH I+ V ++TG Sbjct: 324 VAVLAMLQMVDAGYQCALLAPTEVLAAQHLRSIRDVLGPLAMGGQLGGAENATRVALLTG 383 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 +M +++ IA GQ I+IGTHAL Q+++ ++ L +V+VDEQHRFGV+QR +L K Sbjct: 384 SMTAGQKKQVRAEIASGQVGIVIGTHALLQEAVDFHNLGMVVVDEQHRFGVEQRDQLRAK 443 Query: 418 ATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDE 470 A A PH+L+MTATPIPRT+ LT GD++ S + E P GR+PI T +I + +D Sbjct: 444 APAGITPHLLVMTATPIPRTVALTVYGDLETSTLRELPLGRQPIATNVIFVKDKPAWLDR 503 Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---------SIAII 521 R+ + G++AY + P+I+E +++ + V + F+ +A++ Sbjct: 504 AWRRIIEEAAAGRQAYVVAPRIDESDDTDVQGGVRPSATAEGLFSRLRSAELAELRLALM 563 Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581 HGR+S DK++ M +F+ G +L+ TTVIEVG+DV +A+++++ +A+ FG++QLHQLRG Sbjct: 564 HGRLSADDKDAAMAAFRAGEVDVLVCTTVIEVGVDVPNATVMLVMDADRFGISQLHQLRG 623 Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 R+GRGE S C+L P + RL + T DGF +A+ DLK+RKEG++LG QSG Sbjct: 624 RIGRGEHPSVCLLASWVPPDTPAGQRLRAVAGTMDGFALADLDLKERKEGDVLGRNQSG 682 >gi|15610110|ref|NP_217489.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis H37Rv] gi|15842526|ref|NP_337563.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis CDC1551] gi|31794150|ref|NP_856643.1| ATP-dependent DNA helicase RecG [Mycobacterium bovis AF2122/97] gi|148662822|ref|YP_001284345.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis H37Ra] gi|148824163|ref|YP_001288917.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis F11] gi|215404949|ref|ZP_03417130.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis 02_1987] gi|215412817|ref|ZP_03421529.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis 94_M4241A] gi|215428424|ref|ZP_03426343.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis T92] gi|215431923|ref|ZP_03429842.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis EAS054] gi|215447241|ref|ZP_03433993.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis T85] gi|253797935|ref|YP_003030936.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis KZN 1435] gi|254233059|ref|ZP_04926386.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis C] gi|254365610|ref|ZP_04981655.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis str. Haarlem] gi|254552051|ref|ZP_05142498.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187997|ref|ZP_05765471.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis CPHL_A] gi|260206297|ref|ZP_05773788.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis K85] gi|289448645|ref|ZP_06438389.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis CPHL_A] gi|289553237|ref|ZP_06442447.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis KZN 605] gi|289575680|ref|ZP_06455907.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis K85] gi|289746772|ref|ZP_06506150.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis 02_1987] gi|289751650|ref|ZP_06511028.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis T92] gi|289755089|ref|ZP_06514467.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis EAS054] gi|289759098|ref|ZP_06518476.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis T85] gi|294993940|ref|ZP_06799631.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis 210] gi|297635597|ref|ZP_06953377.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis KZN 4207] gi|297732595|ref|ZP_06961713.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis KZN R506] gi|298526443|ref|ZP_07013852.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis 94_M4241A] gi|306777265|ref|ZP_07415602.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis SUMu001] gi|306781176|ref|ZP_07419513.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis SUMu002] gi|306785814|ref|ZP_07424136.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis SUMu003] gi|306789854|ref|ZP_07428176.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis SUMu004] gi|306794666|ref|ZP_07432968.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis SUMu005] gi|306798909|ref|ZP_07437211.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis SUMu006] gi|306804754|ref|ZP_07441422.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis SUMu008] gi|306808948|ref|ZP_07445616.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis SUMu007] gi|306969046|ref|ZP_07481707.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis SUMu009] gi|306973383|ref|ZP_07486044.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis SUMu010] gi|307081091|ref|ZP_07490261.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis SUMu011] gi|307085693|ref|ZP_07494806.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis SUMu012] gi|313659927|ref|ZP_07816807.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis KZN V2475] gi|54039023|sp|P64323|RECG_MYCBO RecName: Full=ATP-dependent DNA helicase recG gi|54041650|sp|P64322|RECG_MYCTU RecName: Full=ATP-dependent DNA helicase recG gi|1694858|emb|CAB05438.1| PROBABLE ATP-DEPENDENT DNA HELICASE RECG [Mycobacterium tuberculosis H37Rv] gi|13882836|gb|AAK47377.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis CDC1551] gi|31619745|emb|CAD96685.1| PROBABLE ATP-DEPENDENT DNA HELICASE RECG [Mycobacterium bovis AF2122/97] gi|124602118|gb|EAY61128.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis C] gi|134151123|gb|EBA43168.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis str. Haarlem] gi|148506974|gb|ABQ74783.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis H37Ra] gi|148722690|gb|ABR07315.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis F11] gi|253319438|gb|ACT24041.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis KZN 1435] gi|289421603|gb|EFD18804.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis CPHL_A] gi|289437869|gb|EFD20362.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis KZN 605] gi|289540111|gb|EFD44689.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis K85] gi|289687300|gb|EFD54788.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis 02_1987] gi|289692237|gb|EFD59666.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis T92] gi|289695676|gb|EFD63105.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis EAS054] gi|289714662|gb|EFD78674.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis T85] gi|298496237|gb|EFI31531.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis 94_M4241A] gi|308214410|gb|EFO73809.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis SUMu001] gi|308326011|gb|EFP14862.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis SUMu002] gi|308329589|gb|EFP18440.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis SUMu003] gi|308333680|gb|EFP22531.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis SUMu004] gi|308337078|gb|EFP25929.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis SUMu005] gi|308340890|gb|EFP29741.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis SUMu006] gi|308344727|gb|EFP33578.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis SUMu007] gi|308348707|gb|EFP37558.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis SUMu008] gi|308353403|gb|EFP42254.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis SUMu009] gi|308357279|gb|EFP46130.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis SUMu010] gi|308361292|gb|EFP50143.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis SUMu011] gi|308364809|gb|EFP53660.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis SUMu012] gi|323718446|gb|EGB27619.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis CDC1551A] gi|326904587|gb|EGE51520.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis W-148] gi|328457710|gb|AEB03133.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis KZN 4207] Length = 737 Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 224/659 (33%), Positives = 352/659 (53%), Gaps = 68/659 (10%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEE--RIVTITGYISQHSSFQLQK---RRPYKILLNDG 97 DLL ++P S+++ R I + E +TI I+ SF ++K R+ +I + G Sbjct: 31 DLLRHYPRSYVEGAARVGIGDARPEAGEHITIVDVITDTYSFPMKKKPNRKCLRITVGGG 90 Query: 98 TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157 ++T FF + + + K+ ++G++ K + + HP ++ +S D Sbjct: 91 RNKVTATFF--NADYIMRDLTKHTKVMLSGEVGYYKGAMQLTHPAFLILDSPDGKNHGTR 148 Query: 158 AVYSLPTGLSVDLFKKIIVEALSR--LPVLP------EW-IEK------DLLQKKSFPSI 202 ++ S+ S + +++VE R P+ P W I K D+L + P Sbjct: 149 SLKSIADA-SKAISGELVVEEFERRFFPIYPASTKVQSWDIFKCVRQVLDVLDRVDDPLP 207 Query: 203 AE------------AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 AE A IH A+ ARERL +DE + Q AL+ R E Sbjct: 208 AELRAKHGLIPEDEALRAIH---LAESQSLRERARERLTFDEAVGLQWALVARRHGELSE 264 Query: 251 IGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML-RILQGDVGSGKTL 308 G + +A ++LR +PF T Q + D+L D NR L R+LQG+VGSGKT+ Sbjct: 265 SGPSAAWKSNGLAAELLRRLPFELTAGQREVL-DVLSDGLAANRPLNRLLQGEVGSGKTI 323 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITG 357 VA++AM V+AG Q ++AP +LA QH I+ V ++TG Sbjct: 324 VAVLAMLQMVDAGYQCALLAPTEVLAAQHLRSIRDVLGPLAMGGQLGGAENATRVALLTG 383 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 +M +++ IA GQ I+IGTHAL Q+++ ++ L +V+VDEQHRFGV+QR +L K Sbjct: 384 SMTAGQKKQVRAEIASGQVGIVIGTHALLQEAVDFHNLGMVVVDEQHRFGVEQRDQLRAK 443 Query: 418 ATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDE 470 A A PH+L+MTATPIPRT+ LT GD++ S + E P GR+PI T +I + +D Sbjct: 444 APAGITPHLLVMTATPIPRTVALTVYGDLETSTLRELPLGRQPIATNVIFVKDKPAWLDR 503 Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---------SIAII 521 R+ + G++AY + P+I+E +++ + V + F+ +A++ Sbjct: 504 AWRRIIEEAAAGRQAYVVAPRIDESDDTDVQGGVRPSATAEGLFSRLRSAELAELRLALM 563 Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581 HGR+S DK++ M +F+ G +L+ TTVIEVG+DV +A+++++ +A+ FG++QLHQLRG Sbjct: 564 HGRLSADDKDAAMAAFRAGEVDVLVCTTVIEVGVDVPNATVMLVMDADRFGISQLHQLRG 623 Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 R+GRGE S C+L P + RL + T DGF +A+ DLK+RKEG++LG QSG Sbjct: 624 RIGRGEHPSVCLLASWVPPDTPAGQRLRAVAGTMDGFALADLDLKERKEGDVLGRNQSG 682 >gi|284032693|ref|YP_003382624.1| ATP-dependent DNA helicase RecG [Kribbella flavida DSM 17836] gi|283811986|gb|ADB33825.1| ATP-dependent DNA helicase RecG [Kribbella flavida DSM 17836] Length = 747 Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 214/640 (33%), Positives = 336/640 (52%), Gaps = 65/640 (10%) Query: 91 KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD 150 K+++ DG ++ L FF + L N G G++ ++ + P + +D Sbjct: 95 KVVVTDGRNDLELAFFNQP--WLANKLTPGTAALFWGEVTTFRDIRQLKGPGTEILDEED 152 Query: 151 VN-----------FPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKS 198 ++ PL A LPT +++ KI+++ L + +PE + L + Sbjct: 153 LSEAEIERRAKPFRPLYPATAKLPTA-TIERSIKIVLDNLEDVEDPIPELV----LANEK 207 Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INV 257 + EA IH P KD++ A++R ++E L Q L R +P Sbjct: 208 LLGLREALQKIHLPETEKDWD---TAQQRFRFEEALVMQTILAQRRAVADALKAVPRKRT 264 Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317 G + +PF T+ Q +I D+++ + M R+LQG+VGSGKT+VAL AM + Sbjct: 265 PGGLLDDFDARLPFQLTEGQAEVCDEIFADLARPHPMHRLLQGEVGSGKTVVALRAMLSV 324 Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITGNMPQAHRRK 366 V+AGGQAV++AP +LA QH++ + K + V ++TG++ A RR Sbjct: 325 VDAGGQAVLLAPTEVLATQHHKTLTKMLGELAEAGMLGGADRATRVGLLTGSLNAASRRT 384 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA--TAPHVL 424 A+ A G A I++GTHAL +D +Q+ L LV+VDEQHRFGV+QR L+ K+ PHVL Sbjct: 385 AMLDAASGAAGIVVGTHALLEDKVQFADLGLVVVDEQHRFGVEQRAALSTKSGENTPHVL 444 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLS 480 +MTATPIPRT+ +T GD+ +S +TE PAGR PIK+ ++P ++ +R++ + Sbjct: 445 VMTATPIPRTVAMTVFGDLAVSTLTELPAGRSPIKSSVVPAKEKPAWLERAWQRVREEVQ 504 Query: 481 EGKKAYWICPQIEE------KKESNFRSVVERFNSLHEHFTSSI---------------- 518 +G +AY +CP+I + +E F + E +I Sbjct: 505 KGHQAYVVCPRIGDDVKNAGDEEGEFAAGGEDEGDAKSKPRPAISVLQVAEVLQQVLPDL 564 Query: 519 --AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 A++HGR+ +K++VM F G +LIATTVIEVG+DV +AS +++ +A+ FG++QL Sbjct: 565 RQAVLHGRLPAEEKDAVMSRFAAGEIDVLIATTVIEVGVDVPNASTMVVMDADRFGISQL 624 Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636 HQLRGRVGRG+ C+L+ S RL + T DGF ++ DL+ R+EG++LG+ Sbjct: 625 HQLRGRVGRGKVPGLCLLVTDGWPGSKSRERLDAVAATTDGFELSRIDLENRREGDVLGV 684 Query: 637 KQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTS 675 QSG L L D ++ AR A +++ D DL Sbjct: 685 AQSGRRSSLKLLSVLRDEEVIYAARHVANSLVSVDADLAG 724 >gi|167970005|ref|ZP_02552282.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis H37Ra] Length = 1293 Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 224/659 (33%), Positives = 352/659 (53%), Gaps = 68/659 (10%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEE--RIVTITGYISQHSSFQLQK---RRPYKILLNDG 97 DLL ++P S+++ R I + E +TI I+ SF ++K R+ +I + G Sbjct: 587 DLLRHYPRSYVEGAARVGIGDARPEAGEHITIVDVITDTYSFPMKKKPNRKCLRITVGGG 646 Query: 98 TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157 ++T FF + + + K+ ++G++ K + + HP ++ +S D Sbjct: 647 RNKVTATFF--NADYIMRDLTKHTKVMLSGEVGYYKGAMQLTHPAFLILDSPDGKNHGTR 704 Query: 158 AVYSLPTGLSVDLFKKIIVEALSR--LPVLP------EW-IEK------DLLQKKSFPSI 202 ++ S+ S + +++VE R P+ P W I K D+L + P Sbjct: 705 SLKSIADA-SKAISGELVVEEFERRFFPIYPASTKVQSWDIFKCVRQVLDVLDRVDDPLP 763 Query: 203 AE------------AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 AE A IH A+ ARERL +DE + Q AL+ R E Sbjct: 764 AELRAKHGLIPEDEALRAIH---LAESQSLRERARERLTFDEAVGLQWALVARRHGELSE 820 Query: 251 IGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML-RILQGDVGSGKTL 308 G + +A ++LR +PF T Q + D+L D NR L R+LQG+VGSGKT+ Sbjct: 821 SGPSAAWKSNGLAAELLRRLPFELTAGQREVL-DVLSDGLAANRPLNRLLQGEVGSGKTI 879 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITG 357 VA++AM V+AG Q ++AP +LA QH I+ V ++TG Sbjct: 880 VAVLAMLQMVDAGYQCALLAPTEVLAAQHLRSIRDVLGPLAMGGQLGGAENATRVALLTG 939 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 +M +++ IA GQ I+IGTHAL Q+++ ++ L +V+VDEQHRFGV+QR +L K Sbjct: 940 SMTAGQKKQVRAEIASGQVGIVIGTHALLQEAVDFHNLGMVVVDEQHRFGVEQRDQLRAK 999 Query: 418 ATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDE 470 A A PH+L+MTATPIPRT+ LT GD++ S + E P GR+PI T +I + +D Sbjct: 1000 APAGITPHLLVMTATPIPRTVALTVYGDLETSTLRELPLGRQPIATNVIFVKDKPAWLDR 1059 Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---------SIAII 521 R+ + G++AY + P+I+E +++ + V + F+ +A++ Sbjct: 1060 AWRRIIEEAAAGRQAYVVAPRIDESDDTDVQGGVRPSATAEGLFSRLRSAELAELRLALM 1119 Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581 HGR+S DK++ M +F+ G +L+ TTVIEVG+DV +A+++++ +A+ FG++QLHQLRG Sbjct: 1120 HGRLSADDKDAAMAAFRAGEVDVLVCTTVIEVGVDVPNATVMLVMDADRFGISQLHQLRG 1179 Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 R+GRGE S C+L P + RL + T DGF +A+ DLK+RKEG++LG QSG Sbjct: 1180 RIGRGEHPSVCLLASWVPPDTPAGQRLRAVAGTMDGFALADLDLKERKEGDVLGRNQSG 1238 >gi|310828885|ref|YP_003961242.1| ATP-dependent DNA helicase RecG [Eubacterium limosum KIST612] gi|308740619|gb|ADO38279.1| ATP-dependent DNA helicase RecG [Eubacterium limosum KIST612] Length = 683 Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 225/661 (34%), Positives = 340/661 (51%), Gaps = 43/661 (6%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRR------PYKILLND 96 +LL ++P +++R + +EE VT+ ++ + + +R P L + Sbjct: 31 ELLDFYPRKYLNRKIMGSLQTETEE-AVTVKAVAAKRGALRRIRRNMSLFVLPVVETLEN 89 Query: 97 G---TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153 G GEI L++VF E G++ NR M +P + H S+ +F Sbjct: 90 GESVKGEIVWF----NQPYLRDVFSENETYYFFGRVVIKNNRRQMYNPQFA-HESKLEDF 144 Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213 ++ VY G+ + KK + + ++ + + ++ A IH P Sbjct: 145 FILTPVYPKIEGIPRESLKKYMASVFRQHLLIRDDLPACYRERYHLLPKEAALEKIHFPD 204 Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA-------QKIL 266 +D + R+ ++E L I ++ R +N KI+ ++ Sbjct: 205 TPQD---VVEGKGRIKFEEALKINIGIMNSR---------ALNGVSKISLDNFEALRRFT 252 Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 + +PF T SQ S + DI DM + M R++QGDVGSGKT++A+ G Q Sbjct: 253 KGLPFELTASQLSVLDDIAGDMKKGIVMNRLVQGDVGSGKTIIAVACAYLMALNGYQTAY 312 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 MAP ILA QH ++Y + I VE++TG+ R + IA G+A +IIGTHAL Sbjct: 313 MAPTEILAGQHAANFRQYLEPYGICVELLTGSQKTKERNAVTKTIASGEAQVIIGTHALI 372 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 QDS+ YY L LVI DEQHRFGV+QR KL K PH L+M+ATPIPRTL L GD+D+S Sbjct: 373 QDSVDYYNLGLVITDEQHRFGVKQRGKLGLKGEMPHTLVMSATPIPRTLALILYGDLDVS 432 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVE 505 I E P GRK IKT +++ + + +G++A+ ICP IEE +E S + + Sbjct: 433 YIDELPKGRKKIKTYFYNEKSYPKILSFMANEMDKGRQAFVICPFIEESEEMSEVKDIQS 492 Query: 506 RFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 F + + + S IA ++ RMS DK+ ++D+F LL+AT++IEVGIDV + S+I Sbjct: 493 VFAEVKQFYGSRYRIACLYSRMSGEDKKQIIDAFNRCEIDLLVATSIIEVGIDVPNVSVI 552 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT--RLSVLKNTEDGFLIA 621 I +A+ FGL+QLHQLRGRVGRG S C L+ + S+N T R+ V+ N G IA Sbjct: 553 TILSADRFGLSQLHQLRGRVGRGMHQSYCFLVSN---SRNDQTIERMRVIVNNHSGKKIA 609 Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL-TQDPDLTSVRGQS 680 +ED + R G+ G+KQ G P+F P L+ +K AK I + D + + R + Sbjct: 610 DEDYRLRGPGDYFGMKQHGFPEFKALNPYEDFDLISETKKVAKEIYHSGDKETMAYRARI 669 Query: 681 I 681 I Sbjct: 670 I 670 >gi|88856719|ref|ZP_01131374.1| ATP-dependent DNA helicase RecG [marine actinobacterium PHSC20C1] gi|88814016|gb|EAR23883.1| ATP-dependent DNA helicase RecG [marine actinobacterium PHSC20C1] Length = 724 Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 226/698 (32%), Positives = 368/698 (52%), Gaps = 55/698 (7%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP--YKILLNDGTGE 100 DL+ + P + R ++++ + VTI + + + ++ +R ++ ++DGTG Sbjct: 32 DLMTHFPRRYARRGELTALAQLPLDEAVTIVAEVREVRNRPMRNKRGSILEVSISDGTGI 91 Query: 101 ITLLFF---YRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157 +TL FF +R E+ V R I GK+ + + + HP Y + + E Sbjct: 92 LTLTFFNQAWRANELSPGV----RGI-FAGKVGQYRGTRQLAHPDYELFDRDALELKKPE 146 Query: 158 ----------AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFN 207 +Y + ++ +K + L L L + + + +++ A+A Sbjct: 147 QAKAWAEQPIPIYPATSTVASWQIQKAVEVVLDTLGPLDDPVPDAVRRERELLPFAKALE 206 Query: 208 IIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267 +H P+ D +W + AR+ L + E Q ALL R++ ++ I G + + Sbjct: 207 SVHRPKV--DSDWRT-ARDALRFQEAFVLQSALLQQRQKQRESEAI-ARTAGSLLEAFDA 262 Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 +PF T Q++ + I +DM++ M R++QG+VGSGKTLVAL AM A ++GGQ+ ++ Sbjct: 263 ALPFVLTGDQQTVGEQIFRDMAEPVPMNRLVQGEVGSGKTLVALRAMLAVAQSGGQSALL 322 Query: 328 APIGILAQQHYEFIKKYTQ---NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384 AP +LA QH+ I + + Q+ IITG +P A R+KAL G + ++IGTHA Sbjct: 323 APTEVLAHQHFRSIVRTLGPDLSAQLRPTIITGQLPTAERKKALLASVSGASRLVIGTHA 382 Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDI 443 L D++ + L LV+VDEQHRFGV QR L K + PHVL++TATPIPRT+ +T GD+ Sbjct: 383 LLGDAVSFVDLGLVVVDEQHRFGVDQREALRLKGSKPPHVLVLTATPIPRTVAMTVFGDL 442 Query: 444 DISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497 DIS I E PAGR+PI + ++P+ + V ERL L+ G++ + +CP I+ K E Sbjct: 443 DISSIAELPAGRQPISSHVVPLAEKPGWVSRVWERLAEELAVGRQGFVVCPAIDAKTEEP 502 Query: 498 --------------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537 +N V+ S I +HG++S +K+ +M +F Sbjct: 503 GTEPVPSSADDPDAGPPRPIANVTEVLASLRSNSVLAGKRIEALHGKLSSDEKDELMRAF 562 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 G +L+ATTVIEVG+DV +AS++++ +A+ FG++QLHQLRGRVGRG C+ + Sbjct: 563 AAGDIDVLVATTVIEVGVDVPNASVMVVLDADRFGVSQLHQLRGRVGRGGVPGLCLFVTA 622 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LL 656 + + R+ + +T DGF +A +DL+ R+EG++LG QSG L +D L+ Sbjct: 623 AEVESLARERVEAVASTLDGFELANKDLELRREGDVLGGVQSGGRSSLKLLRVANDGQLI 682 Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694 AR+ A+ +L DP L + + L + +EAF Sbjct: 683 TEAREAAQAVLADDPTLAEHPALAAALKRRLDESSEAF 720 >gi|323359687|ref|YP_004226083.1| RecG-like helicase [Microbacterium testaceum StLB037] gi|323276058|dbj|BAJ76203.1| RecG-like helicase [Microbacterium testaceum StLB037] Length = 729 Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 227/682 (33%), Positives = 350/682 (51%), Gaps = 61/682 (8%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP--YKILLNDGTGE 100 +LL ++P + R IS + VTI + S ++Q RR +++++DG G Sbjct: 33 ELLEHYPRRYARRGELTPISTLPLGEPVTIVAEVVSASERRMQNRRGSLLEVVISDGDGR 92 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHN----------SQ 149 ++L FF + LK+ GR+ +GK+ + + + + +P Y +F + S Sbjct: 93 LSLTFFNQPWR-LKD-LTPGRRGIFSGKVGEYRRQTQLTNPDYELFDDLAEARAEAEVSA 150 Query: 150 DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNII 209 P+ A ++P+ L +K I L L + + + DL ++ A I Sbjct: 151 KRPIPIYPATATVPS----PLVQKTISLVLDALGDIDDPLPDDLRARRGLLPARTALEQI 206 Query: 210 HNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN--VEGKIAQKILR 267 H P D PA L E Q ALL R QF + + G + ++ R Sbjct: 207 HRPEDDDDI---PPAVATLRMQEAFVLQTALLQQR-QFVRALSATKRPAAPGGLLERFDR 262 Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 +PF T Q+S I DM M R++QG+VGSGKTLVAL AM E GGQ+ ++ Sbjct: 263 ILPFELTPDQQSVGAQIQADMVGDWPMNRLVQGEVGSGKTLVALRAMLQVAETGGQSALI 322 Query: 328 APIGILAQQHYEFIKKYTQ---NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384 AP +LA QH I + +++ ++TG +P A RRKA R+A GQA I++GTHA Sbjct: 323 APTEVLAAQHLRSIARMLGPELAPELMPTLLTGQLPAAERRKAALRVASGQARIVVGTHA 382 Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444 L + + L V+VDEQHRFGV QR L K +PH +++TATPIPRT+ +T GD+D Sbjct: 383 LLSSTTTFADLGFVVVDEQHRFGVDQREALRAKGDSPHTIVLTATPIPRTVAMTVFGDLD 442 Query: 445 ISKITEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEGKKAYWICPQIE------- 493 +S I PAGR I++ + P+ + V +R+ +++G++A+ +C I+ Sbjct: 443 VSTIRTMPAGRAGIQSFVAPLAEKPSWFARVWDRVAEEVAQGRQAFVVCAAIDADQLAAD 502 Query: 494 -------------------EKKESNFRSV-VERFNSLHEHFTS-SIAIIHGRMSDIDKES 532 + + + + V VE S FT + I+HG+M +K++ Sbjct: 503 DKTDEPADAPEGPASAAASDGQRTRWGVVQVEALLSRLPAFTGIRVEILHGKMPSDEKDA 562 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 VM +F G +L+ATTVIEVG+DV +AS ++I A+ FG++QLHQLRGRVGRG C Sbjct: 563 VMQAFARGDIDVLVATTVIEVGVDVPNASTMVILEADRFGVSQLHQLRGRVGRGGLPGLC 622 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 +L+ +S R+ + T DGF +AE DL+ R EG++LG QSG+ L + Sbjct: 623 LLVTEAAPGTSSRARVDAVAATLDGFALAEVDLELRGEGDVLGGAQSGVRSSLRLLRVVT 682 Query: 653 DS-LLEIARKDAKHILTQDPDL 673 D+ L+ AR + + +L DP L Sbjct: 683 DADLITEARAEGERLLADDPAL 704 >gi|148272534|ref|YP_001222095.1| ATP-dependent DNA helicase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830464|emb|CAN01399.1| ATP-dependent DNA helicase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 727 Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 223/685 (32%), Positives = 355/685 (51%), Gaps = 67/685 (9%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP--YKILLNDGTGE 100 DLL + P + R ++E+ ++ TI + + ++ RR ++ + DG G Sbjct: 31 DLLEHLPRRYARRGELTALAELPVDQQATIVAEVREVRERPMRARRGSILEVRITDGRGF 90 Query: 101 ITLLFF---YRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD------- 150 +TL FF +R +++ V + GK+ + + + HP Y ++ + Sbjct: 91 LTLTFFNQAWRAKDLVPGV-----RGIFAGKVSDYRGALQLAHPDYELFDAHEGPELSGG 145 Query: 151 ---------VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPS 201 P+ +Y ++ K + AL + L + + D+ ++ Sbjct: 146 EPDAAARRWAEMPI--PIYPATASMASWQVAKSVELALDAVDDLEDPVPADVRAERGLLP 203 Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGK 260 EA +H P K D +W R+ L + E Q ALL R+ + P I G Sbjct: 204 YREALEGVHRPEK--DVDWKR-GRDALRFQEAFVLQTALLQRRQAARALPATPRIPTAGG 260 Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320 ++ +PF T Q ++I DM++ M R++QG+VGSGKTLVAL AM A + Sbjct: 261 HLDRLDAQLPFELTGDQRLVGEEIATDMARTWPMNRLVQGEVGSGKTLVALRAMLAVADT 320 Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQ---NTQIIVEIITGNMPQAHRRKALERIAHGQAH 377 GGQ+ ++AP +LA QH + +++ ++TG + A R++AL RI GQA Sbjct: 321 GGQSALLAPTEVLASQHLRSLTASLGPDLAAELMPTLLTGQLSTAERKRALLRIVSGQAR 380 Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLV 436 I++GTHAL D +++ L LV+VDEQHRFGV QR L +K T PHVL++TATPIPRT+ Sbjct: 381 IVVGTHALLGDRVEFLDLGLVVVDEQHRFGVDQREALRRKGGTPPHVLVLTATPIPRTVA 440 Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQI 492 +T GD+D+S I E P+GR+P+++ ++P++ I+ V ER + +G++A+ +CP I Sbjct: 441 MTVFGDLDVSTIAELPSGRQPMESFVVPLHEQPRWIERVWERTAEEIQKGRQAFVVCPAI 500 Query: 493 EEKKESNFR-------------------SVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532 + + + V+ + H S A++HGRMS +K+ Sbjct: 501 DPQDPDAEDEDAAEGADDAATRPALATVTEVDALLAAHPRLGSVRRAVLHGRMSGEEKDR 560 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 VM +F G L++ATTVIEVG+DV +AS ++I +A+ FG++QLHQLRGRVGRG C Sbjct: 561 VMRAFSAGDIDLIVATTVIEVGVDVPNASTMVILDADRFGVSQLHQLRGRVGRGGVPGLC 620 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL----IAQ 648 +++ H + R+ + T DGF +A DL+ R+EG++LG QSG L +AQ Sbjct: 621 LMVTHAEPETVARERVDAVAATLDGFELARVDLELRREGDVLGTNQSGGRSSLRLLRVAQ 680 Query: 649 PELHDSLLEIARKDAKHILTQDPDL 673 L+E AR+ A +L PDL Sbjct: 681 ---DGDLIESAREHAHDVLEASPDL 702 >gi|262066091|ref|ZP_06025703.1| ATP-dependent DNA helicase RecG [Fusobacterium periodonticum ATCC 33693] gi|291380186|gb|EFE87704.1| ATP-dependent DNA helicase RecG [Fusobacterium periodonticum ATCC 33693] Length = 690 Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 225/608 (37%), Positives = 337/608 (55%), Gaps = 17/608 (2%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKI---LLNDGTG 99 DL++Y P ++ +R I ++ V + S S + R KI ++ DGTG Sbjct: 38 DLIYYFPRAYDNRSNVKSIGNLTFNEYVVVKA--SVMSVLNMPNRSGKKIVKAIITDGTG 95 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEA 158 + +L+F + G + G+ KK N ++P Y + Q+ I Sbjct: 96 IMEVLWF--GMPYISKSLKVGEEYIFIGQTKK-SNLFQFINPEYKLYKGQEKETSKEILP 152 Query: 159 VYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 +YS ++ + +KII + L L E I DL+ K + I E I N + Sbjct: 153 IYSSNKSITQNNLRKIIKKFLENFLKYFEENIPNDLV--KGYKEIFERTQAIKNIHFPES 210 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI--AQKILRNIPFSPTK 275 + A R A +ELL ++ +L R +EGK +K L +PF T+ Sbjct: 211 VQAIEAANLRFATEELLILELGILKNRFIVDSLNTKKYEIEGKKEKVRKFLELLPFELTR 270 Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 +Q+ IK+I ++S + R++QGDVGSGKT VA + + E G Q +MAP ILA Sbjct: 271 AQKKVIKEIYDEISDGKIVNRLVQGDVGSGKTAVATVMLIYMAENGYQGALMAPTEILAN 330 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 QHY +K+ + + V ++T ++ + + LE IA+G I+IGTH+L +D++ + KL Sbjct: 331 QHYLGMKERLEKIGLRVGLLTSSIKGKKKTEILEAIANGDIDIVIGTHSLIEDNVVFKKL 390 Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 L+++DEQHRFGV QR KL +K ++L+MTATPIPR+L L+ GD+D+S I E P GR Sbjct: 391 GLIVIDEQHRFGVNQRNKLREKGFLGNLLVMTATPIPRSLALSIYGDLDLSIIDELPPGR 450 Query: 456 KPIKTVIIPINR-IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 PIKT I ++ + + + + ++ G +AY++ P IE + +SV + + F Sbjct: 451 TPIKTKWIANDKDLSIMYDFIYKKVNSGNQAYFVAPLIETSDKMALKSVDKVSEEIERRF 510 Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 + I IIHG+M +K+ VM FKN +LIATTVIEVGIDV ++I+ I NAE FGL Sbjct: 511 SDKKIGIIHGKMKAKEKDEVMLKFKNKEYDILIATTVIEVGIDVPASTIMTIYNAERFGL 570 Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633 + LHQLRGRVGRG + S C L+ ++NS RLS+++ TEDGF+IAEEDLK R GEI Sbjct: 571 SALHQLRGRVGRGSKQSYCFLISEST-TENSKQRLSIMEKTEDGFVIAEEDLKLRNSGEI 629 Query: 634 LGIKQSGM 641 G++QSG Sbjct: 630 FGLRQSGF 637 >gi|315445121|ref|YP_004078000.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. Spyr1] gi|315263424|gb|ADU00166.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. Spyr1] Length = 753 Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 228/709 (32%), Positives = 365/709 (51%), Gaps = 90/709 (12%) Query: 43 DLLFYHPSSFIDRHYRPKISE---ISEERIVTITGYISQHSSFQLQKRRPYK----ILLN 95 DL+ Y P + D E + E VT I++ + + + +P + + L Sbjct: 31 DLVRYFPRKYSDAMTVRGEGEDLDLEEGEHVTFVDVIAR-AELKRVRNQPSREFLVVTLR 89 Query: 96 DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS---QDVN 152 D ++T FF K LK EG K+ ++G++ + + + HP ++ +S + V Sbjct: 90 DRRPKVTATFFNPK--WLKKTLVEGTKVMLSGEVGYFRGTMQLTHPAFMVLDSASGKTVG 147 Query: 153 FPLIEAVYSLPTGLSVDL---FKK-------------------IIVEALSRLPVLPEWIE 190 + ++ S DL F+K + +AL+ L +PE + Sbjct: 148 TKSLTSIASTSGATGDDLLAEFEKNYFPIYAATSKVQTWDIYACVRQALAVLDPVPETLP 207 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 +++ S EA +H A+D + A ERL +DE Q L++ R Sbjct: 208 DCFVREHDLMSEDEALRAVHLSENAED---RARAIERLTFDEAAGLQWGLVVRRNSELGA 264 Query: 251 IGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309 G P G + + +PF T Q+ + I +++ M R+LQG+VGSGKT+V Sbjct: 265 SGPPAPRRGGGLVDAMTAQLPFELTAGQQEVLAVISEELGAARPMNRMLQGEVGSGKTVV 324 Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-------------TQNTQIIVEIIT 356 +L+AM ++AG Q ++AP +LA QH I+ Q T+ V ++T Sbjct: 325 SLLAMLQMIDAGYQCALLAPTEVLAAQHASSIRSMLGALAGAGELGGAEQATR--VSLLT 382 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 G+M A +R A +A G A I+IGTHAL DS+++ L +V+VDEQHRFGV+QR +L Sbjct: 383 GSMSAAQKRDARREVASGVAGIVIGTHALLSDSVEFDNLGMVVVDEQHRFGVEQRDRLRA 442 Query: 417 KATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----ID 469 KA A PH+L+MTATPIPRT+ LT GD++ S + E P GR+PI T I I +D Sbjct: 443 KAPAGLTPHLLVMTATPIPRTVALTIYGDLETSTLRELPRGRRPITTNTIFIRDKPAWLD 502 Query: 470 EVIERLKVVLSEGKKAYWICPQIEEK-----------------KESNFR-----SVVERF 507 R+ ++ G++AY + +I+E ES+ + +VV+ Sbjct: 503 RAWTRIAEEVAAGRQAYVVASRIDENDTADGKADGKAKKAKKTSESDQQGPPPVTVVDLL 562 Query: 508 NSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 L S + ++HGR+S +K++VM +F+ G +L+ TTVIEVG+DV +A+++++ Sbjct: 563 ARLQRGPLSGVRLGLMHGRLSGDEKDAVMAAFRAGDIDVLVCTTVIEVGVDVPNATVMVV 622 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625 +A+ FG++QLHQLRGR+GRGE S C+L + P S + RL+ + T+DGF +AE DL Sbjct: 623 MDADRFGISQLHQLRGRIGRGEHPSLCLLATNLPESSKAGQRLTAVAATQDGFELAELDL 682 Query: 626 KQRKEGEILGIKQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQDP 671 ++R EG++LG+ QSG P +FL H ++ AR+ + + DP Sbjct: 683 RERSEGDVLGLFQSGRPVTLRFLSLAD--HVEIILSARELCETVYASDP 729 >gi|294791347|ref|ZP_06756504.1| ATP-dependent DNA helicase RecG [Scardovia inopinata F0304] gi|294457818|gb|EFG26172.1| ATP-dependent DNA helicase RecG [Scardovia inopinata F0304] Length = 757 Score = 331 bits (848), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 234/711 (32%), Positives = 362/711 (50%), Gaps = 81/711 (11%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKI------ 92 T D LFY+P D + ++ + + + + RR Y++ Sbjct: 28 TTVADALFYYPFRVTDPVKCCTLRQVKIGQKAAFAATVRRIRVVPMNARRGYRVEVQVDD 87 Query: 93 --LLNDGTGE----ITLLFF-YRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143 L+N G+ T FF Y+K + L + +GR + +G+ N + HP Sbjct: 88 ADLVNPSAGQYEGYATFTFFTYKKHYADWLLSRLKKGRTLVASGEASLYGNNLQFTHPEI 147 Query: 144 IF------HNSQDV--------NFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188 + +S DV + +Y + +S + I+ L L +P+ Sbjct: 148 LTVAEPGQEDSADVASLEEGIHQLSRPQPIYHANSRISSAHIHESILGILQSLQDPIPDV 207 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248 I ++L +F ++A IHNP +F W + R Y+E L Q ALL R++ + Sbjct: 208 IPEEL--SGTFMHRSQALMAIHNPHSIDEF-WRGISTMR--YEEALVSQTALLQEREKMQ 262 Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 I E + +K + ++PF T QE I I DM + M R+LQG+VGSGKT+ Sbjct: 263 SSDSY-ICTETSLTEKFIHSLPFDLTSGQEEVISQIQTDMGRDYPMSRLLQGEVGSGKTV 321 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII--TGNMPQAHRRK 366 VAL A+ A +G QAV++AP +LA+QHY+ I Q +I + ++ TG M A RR+ Sbjct: 322 VALAALLQAASSGYQAVLVAPTQVLARQHYQVIASMLQKAEIDLPLVLLTGGMHLADRRQ 381 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLL 425 AL A G I++ THA F + Q + L ++DEQHRFGV+QR K+ ++++A PH+L+ Sbjct: 382 ALAIPASGVPCIVVATHAAFSSTFQAPHVALEVIDEQHRFGVEQREKMREESSAIPHLLV 441 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEG 482 MTATPIPR+ +T G++DIS +TE P GR+PI +V+I N + ++ ++ L G Sbjct: 442 MTATPIPRSAAMTWFGNLDISWLTELPQGRQPITSVVIEENDSQIMGQMFAHIRHRLDAG 501 Query: 483 KKAYWICPQIEEKKESN-----------------------------------FRSVVE-- 505 ++AY ICP+I++ ++++ SV E Sbjct: 502 ERAYVICPRIDDSQDADSANGGRDGTEETDTIDLLSYDADGMLADDQERERPLHSVSEIA 561 Query: 506 -RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 R L + IA + GR D K+ VM F +GT LL+ATTVIEVG+DV +AS I+ Sbjct: 562 ARLAGLPQFSGIQIATLTGRDDDETKDQVMKDFSSGTSPLLVATTVIEVGVDVPEASCIV 621 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624 + +A+ FGL+QLHQLRGRVGRG+ S + P + RL V+++T DG IA+ D Sbjct: 622 VFDADRFGLSQLHQLRGRVGRGKSRSWAFFISRAPQDSLAAQRLEVIRSTSDGAKIAQAD 681 Query: 625 LKQRKEGEILGIKQS-GMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 L+ R G++LG QS G F + + ++ ARKDA ++L DP+L+ Sbjct: 682 LELRGAGDVLGDAQSGGRTSFKLLRVVKDADIISSARKDADNVLVSDPNLS 732 >gi|328947379|ref|YP_004364716.1| ATP-dependent DNA helicase RecG [Treponema succinifaciens DSM 2489] gi|328447703|gb|AEB13419.1| ATP-dependent DNA helicase RecG [Treponema succinifaciens DSM 2489] Length = 728 Score = 331 bits (848), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 239/738 (32%), Positives = 368/738 (49%), Gaps = 89/738 (12%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYR-PKISEI 64 L+ L A + T GVG + + + N DLL P + DR R P + Sbjct: 3 LSELGAAVETLSGVGPAAAKKFASL------NIFTVADLLSVFPRDYEDRTKRIPLRDYV 56 Query: 65 SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124 + ++ TI ++ H F K + KI + DG+ L+ F R + L+ EG I Sbjct: 57 NFPKVHTICK-VTAHQWFGYGKMKTLKIAITDGSANAWLVAFNR--DFLEKSLPEGSIIA 113 Query: 125 VTGKIK----KLKNRIIMVHPHYIFHNSQDV-NFPLIEA----VYSLPTGLSVDLFKKII 175 VTGK + +L++ N D N P+ ++ +Y L GL+ +++K + Sbjct: 114 VTGKFETKYNELQSSSFEASRISFDGNLADFENIPVPDSAVIPIYPLTEGLTQKVYRKTV 173 Query: 176 VEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234 +AL + + I ++++++ + +EA +H P+ AR+ L Y+EL Sbjct: 174 AQALKQYAKNISNEIPDKIIKERNLLNKSEAILFVHQPQT---LNQAQEARKTLIYEELY 230 Query: 235 AGQIALL---LMRK--------------------------QFKKEIGIPINVEGKIAQKI 265 + +L LM + Q + E ++ K +I Sbjct: 231 LFEYKMLERALMHRGTLPLQDFVPEAYPYFSTPDSETGLEQIRNEFQKSLSPRQK---QI 287 Query: 266 LRNIPFSPTKSQESAI----KDILQDMSQKNRML--------------RILQGDVGSGKT 307 ++ F T Q ++I +DI + ++ N ML R+LQGDVGSGKT Sbjct: 288 FSSLNFELTLDQMNSILEMNRDIDKSQTECNTMLNAPQKLSKPPFSMQRLLQGDVGSGKT 347 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 LV+ A ++ GGQ I+AP +LA+QH E K + I +TGN+ + R+ Sbjct: 348 LVSFFVCARTIDYGGQCAILAPTELLARQHAENAAKLLEPAGIKTAFLTGNLKASGRQSL 407 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK--------AT 419 L + G I+IGTHALF + QY L L ++DEQHRFGV QR + K A Sbjct: 408 LNALRDGNIDIVIGTHALFSRNTQYKNLQLAVIDEQHRFGVTQRESIISKGRISFKHMAH 467 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +P +L+M+ATPIP+TL LT+ GD+DIS I P GR P+KT + V E ++ L Sbjct: 468 SPDLLMMSATPIPQTLALTAFGDLDISVIKTMPKGRLPVKTYLTVFGNERNVYEAIRKEL 527 Query: 480 SEGKKAYWICPQI------EEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKE 531 + G +AY++ P+I E+ ++++ +S E F+ L + + A+IHG+ D + Sbjct: 528 NAGHQAYFVYPRIAENPQAEQTEKTSLKSAEEMFDFLSKEVYPNFKCALIHGKTDDEQQA 587 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 ++ F +G ++L+ATTV+EVG+DV +A+ I IE+AE FGLA+LHQLRGRVGRG+ S Sbjct: 588 EILKKFSSGNIQVLVATTVVEVGVDVPNATCIAIEHAERFGLAELHQLRGRVGRGKFQSY 647 Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 C L Y +++ +RL L + DGF IAEEDLK R GE+ G QSG IA Sbjct: 648 CFLTYSKNITETGISRLKALHQSNDGFFIAEEDLKLRGPGEVFGTAQSGYFALNIADLSR 707 Query: 652 HDSLLEIARKDAKHILTQ 669 +L+ AR +A L Q Sbjct: 708 DKEILKTARYNALCQLKQ 725 >gi|169630359|ref|YP_001704008.1| ATP-dependent DNA helicase RecG [Mycobacterium abscessus ATCC 19977] gi|169242326|emb|CAM63354.1| ATP-dependent DNA helicase RecG [Mycobacterium abscessus] Length = 746 Score = 331 bits (848), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 227/720 (31%), Positives = 372/720 (51%), Gaps = 91/720 (12%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEE--------RIVTITGYISQHSSFQLQKRRP--YKI 92 DLL ++P R Y S E+ T+ G+I+ +++ R+ + Sbjct: 31 DLLHHYP-----RRYSTDFSLRDEQDGESAKPGEHTTLVGFITSAELKRMRNRKGQFLSV 85 Query: 93 LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY--------- 143 L + FF+ +K G ++ ++G + + + + + HP Y Sbjct: 86 TLGSAPHAVQATFFH--PHKVKRDLQVGNRVMLSGAVGEFRGKPQLTHPDYLVLETALGE 143 Query: 144 ------------IFHNSQDVN----------FPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 I ++D + FP+ A +L S D+++ I + L++ Sbjct: 144 STETRGSTALRGIAGAARDASTAISAFQRNVFPIYPATKNLE---SWDIYR-CIDQVLTQ 199 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 L +PE + +L + S+ EA IH ++D AR RLA+DE L Q+AL Sbjct: 200 LDPVPEALPDAVLAEYGLMSLDEALRKIH---MSEDASEQKQARRRLAFDEALGLQLALA 256 Query: 242 LMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 + R G P+ + + + +L +PF T+ Q + +I +D++ M R+LQG Sbjct: 257 MRRGSEIGSAGPPMPLAQAGLRADLLGQLPFDLTEGQRHVVAEIGEDLAGVKPMNRLLQG 316 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQ 349 +VGSGKT+VAL+AM A++AG Q ++AP +LA QH ++ + Sbjct: 317 EVGSGKTVVALLAMMQAIDAGYQCALLAPTEVLAVQHARSLRAMLGSLATAGELGAPDDA 376 Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409 + ++TG+M A +++ +A G A I+IGTHAL QDS+ ++ L LV+VDEQHRFGV+ Sbjct: 377 TSIALLTGSMSPAVKKQIKADVATGLAGIVIGTHALLQDSVDFHNLGLVVVDEQHRFGVE 436 Query: 410 QRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466 QR +L KA+ PH+L+MTATPIPRT+ LT GD++ S + E P GR+PI T + Sbjct: 437 QRDRLRAKASQGIVPHLLVMTATPIPRTVALTVFGDLETSTLRELPRGRQPITTTAVFTR 496 Query: 467 R----IDEVIERLKVVLSEGKKAYWICPQIE-EKKESNFRSVVER------FNSLHEHFT 515 + ER+ ++ G++AY + +I+ + K+S E+ L+E Sbjct: 497 EKPGWLARGWERIAEEVAAGRQAYVVASRIDADDKDSGPEEAEEKRPPPVPVTELYETIR 556 Query: 516 SS------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 S I ++HGR+ K++VM +F G +L+ TTVIEVG+DV +A++++I +A+ Sbjct: 557 GSLLPGLRIGLLHGRLPSEQKDAVMTAFNAGEIDVLVCTTVIEVGVDVPNATVMLIMDAD 616 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629 FG++QLHQLRGRVGRG C+L+ + ++ RL +++T DGF +AE DL++R+ Sbjct: 617 RFGISQLHQLRGRVGRGGNKGLCLLVSPCSPAGSAGRRLRAVQDTLDGFTLAELDLEERR 676 Query: 630 EGEILGIKQSGMPKFLIAQPEL-HDSLLEIARKDAKHILTQDPDLT---SVRGQSIRILL 685 EG++LG QSG L L H ++E AR+ A DP+L ++ G + R L+ Sbjct: 677 EGDVLGRDQSGRAVNLRLLSLLDHRDMIETAREMAMRACADDPELAQQPALAGMARRFLV 736 >gi|170781173|ref|YP_001709505.1| putative ATP-dependent DNA helicase RecG [Clavibacter michiganensis subsp. sepedonicus] gi|169155741|emb|CAQ00862.1| putative ATP-dependent DNA helicase RecG [Clavibacter michiganensis subsp. sepedonicus] Length = 727 Score = 331 bits (848), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 226/687 (32%), Positives = 358/687 (52%), Gaps = 67/687 (9%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP--YKILLNDGTGE 100 DLL + P + R ++E+ ++ TI + + ++ RR ++ + DG G Sbjct: 31 DLLEHLPRRYARRGELTALAELPVDQQATIVAEVREVRERPMRARRGSILEVRITDGRGF 90 Query: 101 ITLLFF---YRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD------- 150 +TL FF +R +++ V + GK+ + + + HP Y ++ + Sbjct: 91 LTLTFFNQAWRAKDLVPGV-----RGIFAGKVSDYRGALQLAHPDYELFDAHEGPELSGG 145 Query: 151 ---------VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPS 201 P+ +Y ++ K + AL + L + + D+ ++ Sbjct: 146 EPDAAARRWAEMPI--PIYPASASMASWQVAKSVELALDAVDDLEDPVPADVRAERGLLP 203 Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGK 260 EA +H P K D +W R+ L + E Q ALL R+ + P I G Sbjct: 204 YREALEGVHRPEK--DVDWKR-GRDALRFQEAFVLQTALLQRRQAARALPATPRIPTPGG 260 Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320 ++ +PF T Q ++I DM++ M R++QG+VGSGKTLVAL AM A ++ Sbjct: 261 HLDRLDAQLPFELTGDQRLVGEEIATDMARTWPMNRLVQGEVGSGKTLVALRAMLAVADS 320 Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQ---NTQIIVEIITGNMPQAHRRKALERIAHGQAH 377 GGQ+ ++AP +LA QH + +++ ++TG + A R++AL RI GQA Sbjct: 321 GGQSALLAPTEVLASQHLRSLTASLGPDLAAELMPTLLTGQLSTAERKRALLRIVSGQAR 380 Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVLLMTATPIPRTLV 436 I++GTHAL D + + L LV+VDEQHRFGV QR L +K T PHVL++TATPIPRT+ Sbjct: 381 IVVGTHALLGDRVGFLDLGLVVVDEQHRFGVDQREALRRKGGTPPHVLVLTATPIPRTVA 440 Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQI 492 +T GD+D+S I E P+GR+PI++ ++P++ I+ V ER + +G++A+ +CP I Sbjct: 441 MTVFGDLDVSTIAELPSGRQPIESFVVPLHEHPGWIERVWERTAEEIQKGRQAFVVCPAI 500 Query: 493 -------------EEKKESNFR---SVVERFNSL---HEHFTS-SIAIIHGRMSDIDKES 532 E +++ R + V ++L H S A++HGRM+ +K+ Sbjct: 501 DPQDPDAEDEDAGEGAEDAPTRPSLATVTEVDALLGAHPRLGSVRRAVLHGRMTGEEKDR 560 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 VM +F G L++ATTVIEVG+DV +AS ++I +A+ FG++QLHQLRGRVGRG C Sbjct: 561 VMRAFSAGDIDLIVATTVIEVGVDVPNASTMVILDADRFGVSQLHQLRGRVGRGGVPGLC 620 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL----IAQ 648 +++ H + R+ + T DGF +A DL+ R+EG +LG QSG L +AQ Sbjct: 621 LMVTHAEPETVARERVDAVAATLDGFELARVDLELRREGNVLGTNQSGGRSSLRLLRVAQ 680 Query: 649 PELHDSLLEIARKDAKHILTQDPDLTS 675 L+E AR+ A +L PDL Sbjct: 681 ---DGDLIESAREHAHDVLEASPDLAD 704 >gi|145224791|ref|YP_001135469.1| ATP-dependent DNA helicase RecG [Mycobacterium gilvum PYR-GCK] gi|145217277|gb|ABP46681.1| ATP-dependent DNA helicase RecG [Mycobacterium gilvum PYR-GCK] Length = 753 Score = 331 bits (848), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 217/653 (33%), Positives = 344/653 (52%), Gaps = 82/653 (12%) Query: 92 ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS--- 148 + L D ++T FF K LK EG K+ ++G++ + + + HP ++ +S Sbjct: 86 VTLRDRRPKVTATFFNPK--WLKKTLVEGTKVMLSGEVGYFRGTMQLTHPAFMVLDSASG 143 Query: 149 QDVNFPLIEAVYSLPTGLSVDL---FKK-------------------IIVEALSRLPVLP 186 + V + ++ S DL F+K + +AL+ L +P Sbjct: 144 KTVGTKSLTSIASTSGATGDDLLAEFEKNYFPIYSATSKVQTWDIYACVRQALAVLDPVP 203 Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E + +++ S EA +H A+D + A ERL +DE Q L++ R Sbjct: 204 ETLPDWFVREHDLMSEDEALRAVHLSENAED---RARAIERLTFDEAAGLQWGLVVRRNS 260 Query: 247 FKKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305 G P G + + +PF T Q+ + I +++ M R+LQG+VGSG Sbjct: 261 ELGASGPPAPRRGGGLVDAMTAQLPFELTAGQQEVLAVISEELGAARPMNRMLQGEVGSG 320 Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-------------TQNTQIIV 352 KT+V+L+AM ++AG Q ++AP +LA QH I+ Q T+ V Sbjct: 321 KTVVSLLAMLQMIDAGYQCALLAPTEVLAAQHSSSIRSMLGALAGAGELGGAEQATR--V 378 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 ++TG+M A +R A +A G A I+IGTHAL DS+++ L +V+VDEQHRFGV+QR Sbjct: 379 SLLTGSMSAAQKRDARREVASGVAGIVIGTHALLSDSVEFDNLGMVVVDEQHRFGVEQRD 438 Query: 413 KLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-- 467 +L KA A PH+L+MTATPIPRT+ LT GD++ S + E P GR+PI T I I Sbjct: 439 RLRAKAPAGLTPHLLVMTATPIPRTVALTIYGDLETSTLRELPRGRRPITTNTIFIRDKP 498 Query: 468 --IDEVIERLKVVLSEGKKAYWICPQIEEK-----------------KESNFR-----SV 503 +D R+ ++ G++AY + +I+E ES+ + +V Sbjct: 499 AWLDRAWTRIAEEVAAGRQAYVVASRIDENDTADGKADGKAKKAKKTSESDQQGPPPVTV 558 Query: 504 VERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 V+ L S + ++HGR+S +K++VM +F+ G +L+ TTVIEVG+DV +A+ Sbjct: 559 VDLLARLQRGPLSGVRLGLMHGRLSGDEKDAVMAAFRAGDIDVLVCTTVIEVGVDVPNAT 618 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621 ++++ +A+ FG++QLHQLRGR+GRGE S C+L + P S + RL+ + T+DGF +A Sbjct: 619 VMVVMDADRFGISQLHQLRGRIGRGEHPSLCLLATNLPESSKAGQRLTAVAATQDGFELA 678 Query: 622 EEDLKQRKEGEILGIKQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQDP 671 E DL++R EG++LG+ QSG P +FL H ++ AR+ + + DP Sbjct: 679 ELDLRERSEGDVLGLFQSGRPVTLRFLSLAD--HVEIILSARELCETVYASDP 729 >gi|259501525|ref|ZP_05744427.1| DNA helicase RecG [Lactobacillus iners DSM 13335] gi|259167043|gb|EEW51538.1| DNA helicase RecG [Lactobacillus iners DSM 13335] Length = 673 Score = 331 bits (848), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 223/700 (31%), Positives = 367/700 (52%), Gaps = 45/700 (6%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 L L P+S GVG K + LS++ DLLFY P + P ++E+ Sbjct: 6 LKVLLNPVSDLDGVGVKTAEALSQL------KIKTIYDLLFYFPRRYDSLETFP-LNELK 58 Query: 66 EERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + + V + G I S + R +K+ ++ +I ++ F+ + LK +G Sbjct: 59 DGQKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDH---DIIMVNFFNQP-WLKKQLQKGN 114 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI------EAVYSLPTGLSVDLFKKII 175 I + GK Y+ + + ++ E VYSL + + I Sbjct: 115 DIAIYGK--------------YVLASQTLSAYKIVLREEGFEPVYSLNSHIKQKKLVSFI 160 Query: 176 VEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234 +A+ + LP LPE I + L K + +H P KD + A+ + E Sbjct: 161 SQAIEKYLPQLPEVIPQYLRDKYKLLDVKSMIIQMHQP---KDLQQVKVAQRTAIFLEFF 217 Query: 235 AGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 Q+ L L+ +K GI + ++ +I F + Q AI +IL D++ R Sbjct: 218 VFQLQLSQLLYANDQKNSGIAKKYDSSAINELKESINFQLSDDQIQAINEILADLASAKR 277 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R+LQGDVGSGKT+VA+ A+ A + AG Q +M P ILAQQH I + + Sbjct: 278 MNRLLQGDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCA 337 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++T + +++ + G +++IGTHA+ QD + + KL LVI+DEQHRFGV QR + Sbjct: 338 LLTSSTKLNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQ 397 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 L K +L M+ATPIPRTL L+ G+ +S+I + P GRK + + I + + +++ Sbjct: 398 LLNKGKMVDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLT 457 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKES 532 + L +G + Y + P I E + + ++ + + +F S +A++HG+M+ K Sbjct: 458 LMNEQLEQGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMASSQKSD 517 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +MD+F +G+ K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG S C Sbjct: 518 IMDAFIHGSIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGSTQSYC 577 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 I + P + ++ RL ++ +DGF +A EDLK R EG++ G QSG+P+F + + Sbjct: 578 IFVSDPK-TDSAKKRLKIISTCDDGFALAREDLKLRGEGDLFGQAQSGIPQFKLGDIINN 636 Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692 ++ A+K++K ++ Q+P+L G+ L L +Y++ Sbjct: 637 YNIFTTAQKESKILVHQNPELV---GEEYDFLKLLMEYDD 673 >gi|296130143|ref|YP_003637393.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM 20109] gi|296021958|gb|ADG75194.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM 20109] Length = 747 Score = 330 bits (847), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 217/697 (31%), Positives = 359/697 (51%), Gaps = 68/697 (9%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEI 101 DL+ ++P + + ++ + VT+ + + S Q R + + DG I Sbjct: 32 DLVRHYPRRYAEPGTLTDMASLRVGEHVTVVAEVVRTSLRPTAQGRGLLQSTITDGHSRI 91 Query: 102 TLLFF---YRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP---- 154 L FF +K E + GR+ TG++ ++ + ++HP + D Sbjct: 92 ELTFFASHVKKLEWRQGQLRPGRRGLFTGEVSLYRDTLQLMHPECRLFGADDDAHDEDEA 151 Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRL---PV----LPEWIEKDLLQKKSFPSIAEAFN 207 L+EA +P +V F+ V R P+ +P+ + DL + + P++ EA Sbjct: 152 LLEAGRPIPVYPAVAGFESWKVAQAVRTVLDPLREEDVPDPVPPDLRARDALPTLLEALR 211 Query: 208 IIHNPRKAKDFEWTSPARERLAYDE--LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI 265 ++H P+ D+ R RL Y+E +L ++A R ++ + P +G + Sbjct: 212 LVHVPQDEADWRR---GRTRLRYEEALVLQAELARRRARAAQQEAVARPPRADGLLDAFD 268 Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 R +PF+ T Q + ++I ++++ M R+LQG+VGSGKT+VAL AM V+AGGQA Sbjct: 269 AR-LPFTLTAGQRAVGEEIARELAAPRPMQRLLQGEVGSGKTVVALRAMLQVVDAGGQAA 327 Query: 326 IMAPIGILAQQHYEFIKKYTQNTQ-----------IIVEIITGNMPQAHRRKALERIAHG 374 ++AP +LA QH +++ + V ++TG++P A RR+A+ A G Sbjct: 328 LLAPTEVLAAQHARTLRRMLGDLAEGGFLGGAALATRVALLTGSLPTAARREAVLDAASG 387 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPR 433 A I++GTHAL D +Q+ L LV+VDEQHRFGV+QR L KA PH L+MTATPIPR Sbjct: 388 AAGIVVGTHALLSDQVQFADLGLVVVDEQHRFGVEQRDALRAKAGRTPHTLVMTATPIPR 447 Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWICP 490 T+ +T GD++ S ++E PAGR I T +P + D +R++ + G +AY +CP Sbjct: 448 TVAMTVFGDLETSVLSEVPAGRAGITTHTVPADNTRWTDRTWQRVREEVERGGRAYVVCP 507 Query: 491 QIEEKKESN----------------------------FRSVVERFNSLHEH--FTS-SIA 519 +I+ + R+V++ L T + Sbjct: 508 RIDGDAPAGDAADEDGTDLVLEAEATVGAPDAGARRPLRAVLDVAEELRARPDLTGIGVG 567 Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579 ++HGR+ +K+ +F +G +L++TTV+EVG+DV DA+++++ +A+ FG++QLHQL Sbjct: 568 VLHGRLGPEEKDRAFAAFASGATPVLVSTTVVEVGVDVPDATVMVVLDADRFGISQLHQL 627 Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639 RGRVGRG C+L+ +++TRL L T DGF +A DL+ R EG++LG Q Sbjct: 628 RGRVGRGTRPGLCLLVSAAAPGTDAHTRLETLAATSDGFELAALDLELRHEGDVLGAAQH 687 Query: 640 GMPKFL-IAQPELHDSLLEIARKDAKHILTQDPDLTS 675 G L + + ++ AR DA+ ++ QD +L + Sbjct: 688 GTGSSLRLLRVTRDGDVIARARTDARALVAQDAELAA 724 >gi|227495861|ref|ZP_03926172.1| DNA helicase RecG [Actinomyces urogenitalis DSM 15434] gi|226834618|gb|EEH67001.1| DNA helicase RecG [Actinomyces urogenitalis DSM 15434] Length = 758 Score = 330 bits (847), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 222/739 (30%), Positives = 363/739 (49%), Gaps = 94/739 (12%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99 DLL P + +S + E VT+ + + ++ + + RP + L+ DG Sbjct: 23 DLLRLLPRRYDTWGDLTDLSSLVEGEQVTVQAQVMRSAARRARGGRPPALMEALVTDGAS 82 Query: 100 EITLLFFYRKTEML--KNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN----- 152 ++ ++FF M F G + ++GK+ + P + + D Sbjct: 83 KMDVVFFGAAGLMAHYAEQFSPGTTVLLSGKVGIRHGHRQLASPRFQVLDELDEAERAEL 142 Query: 153 ----FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI 208 P+ A SLP+ V + +++ L+ V PE + ++ Q A+ Sbjct: 143 LARPMPIYPATESLPS-WRVAKAVRTVLDQLTEQDV-PEPLPPEVRQAHDLVGALTAWRW 200 Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK---EIGIPINVEGKIAQKI 265 +H P A+ +W + AR+RL Y+E Q AL+ R + + P G + + Sbjct: 201 VHTPEDAE--QWRA-ARKRLRYEEAFVLQSALVQRRAAHEATHAAVAWPRPGAGSLRASL 257 Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 ++P++ T+ QE +++ + ++ M +LQGDVGSGKTLVAL AM V GGQA Sbjct: 258 DASLPYTLTRGQERVGRELEEALASTVPMQTLLQGDVGSGKTLVALRAMLQVVGGGGQAA 317 Query: 326 IMAPIGILAQQHYEFIKKY-------------TQNTQIIVEIITGNMPQAHRRKALERIA 372 ++AP +LA QH +++ +Q TQ++ ++TG+ P RR+ L R+A Sbjct: 318 LLAPTEVLAAQHRSSLEQLLGPLARAGMLGGASQATQVL--LLTGSTPTPQRREILARLA 375 Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----------APH 422 G++ I++GTHAL D++Q L LV+VDEQHRFGV QR L ++ PH Sbjct: 376 GGESAIVVGTHALLSDTVQIPFLGLVVVDEQHRFGVAQRDALRERGNVRDPDTGQLRTPH 435 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVL 479 +L+MTATPIPRT+ +T GD+D + + E PAGR P+ T ++P R ++ + +R + Sbjct: 436 LLVMTATPIPRTIAMTVFGDLDTAVLDELPAGRSPVATHLVPWERTGWVEGIWQRAAREV 495 Query: 480 SEGKKAYWICPQIEEKKE------------------------------------------ 497 ++G + Y +CP+I+ + Sbjct: 496 AQGGRVYVVCPRIDAGEADPGDSADDPQASASRGGTVPLFAAVPGTGDEAADEESAPARP 555 Query: 498 -SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556 ++ VER SI + GRMS DK++ M F G +L++TTVIEVG+D Sbjct: 556 LASVEDWVERLRGEPALAGVSIGTLTGRMSQADKDAAMADFARGRAPVLVSTTVIEVGVD 615 Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616 V +A++++I +A+ FGL+QLHQLRGRVGRG+ S C+ + + ++ RL T D Sbjct: 616 VPEATMMVILDADRFGLSQLHQLRGRVGRGQRESLCVAVTGVEVGSPAFHRLRAFAQTMD 675 Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKHILTQDPDLTS 675 GF +AE DL+ R EG +LG QSG L + + +L+ AR +A+ +++ DP L Sbjct: 676 GFRLAEADLELRSEGNVLGAAQSGRRSDLDLLRVTRDGALIASARAEAEALVSADPHLAD 735 Query: 676 VRGQSIRILLYLYQYNEAF 694 R + I L + + A+ Sbjct: 736 HRDLAAAIADRLDEESRAY 754 >gi|312874514|ref|ZP_07734539.1| ATP-dependent DNA helicase RecG [Lactobacillus iners LEAF 2053A-b] gi|311089905|gb|EFQ48324.1| ATP-dependent DNA helicase RecG [Lactobacillus iners LEAF 2053A-b] Length = 673 Score = 330 bits (847), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 224/700 (32%), Positives = 367/700 (52%), Gaps = 45/700 (6%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 L L P+S GVG K + LS++ DLLFY P + P ++E+ Sbjct: 6 LKVLLNPVSDLDGVGVKTAEALSQL------KIKTIYDLLFYFPRRYDSLEIFP-LNELK 58 Query: 66 EERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + + V + G I S + R +K+ ++ +I ++ F+ + LK +G Sbjct: 59 DGQKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDH---DIIMVNFFNQP-WLKKQLQKGN 114 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI------EAVYSLPTGLSVDLFKKII 175 I + GK Y+ + + ++ E VYSL + + I Sbjct: 115 DIAIYGK--------------YVLASQTLSAYKIVLKEEGFEPVYSLNSHIKQKKLVSFI 160 Query: 176 VEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234 +A+ + LP LPE I + L K + +H P KD + A+ + E Sbjct: 161 SQAIEKYLPQLPEVIPQYLRDKYKLLDVKSMIIQMHQP---KDLQQVKIAQRTAIFLEFF 217 Query: 235 AGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 Q+ L L+ +K GI + ++ +I F + Q AI +IL D++ R Sbjct: 218 VFQLQLSQLLYANDQKNNGIAKKYDSSAINELKESINFQLSDDQIQAINEILADLASAKR 277 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R+LQGDVGSGKT+VA+ A+ A + AG Q +M P ILAQQH I + + Sbjct: 278 MNRLLQGDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCA 337 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++T + +++ + G +++IGTHA+ QD + + KL LVI+DEQHRFGV QR + Sbjct: 338 LLTSSTKLNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQ 397 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 L K +L M+ATPIPRTL L+ G+ +S+I + P GRK + + I + + +++ Sbjct: 398 LLNKGKMVDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLT 457 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKES 532 + L +G + Y + P I E + + ++ + + +F S +A++HG+M+ K Sbjct: 458 LMNEQLEQGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDRVALLHGKMASSQKSD 517 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +MD+F +G+ K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG S C Sbjct: 518 IMDAFIHGSIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGTTQSYC 577 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 I + P + ++ RL ++ +DGF +A EDLK R EG+I G QSG+P+F + + Sbjct: 578 IFVSDPK-TDSAKKRLKIISTCDDGFALAREDLKLRGEGDIFGQAQSGIPQFKLGDIINN 636 Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692 ++ A+K++K ++ Q+P+L G+ L L +Y++ Sbjct: 637 YNIFTTAQKESKILVHQNPELV---GEEYDFLKLLMEYDD 673 >gi|261415049|ref|YP_003248732.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371505|gb|ACX74250.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302328174|gb|ADL27375.1| ATP-dependent DNA helicase RecG [Fibrobacter succinogenes subsp. succinogenes S85] Length = 697 Score = 330 bits (847), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 227/685 (33%), Positives = 358/685 (52%), Gaps = 50/685 (7%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 LS+ G+G K L+K + + DLL+ P +++D+ KI+E+ + + Sbjct: 3 LSSLPGLGPKRLEKLNK------SGLSTIADLLYNIPRTYLDQTKVSKIAELHDGDRAVV 56 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G I++ + + R + +L DGT EI+LLFF R T + N G + V+G + Sbjct: 57 IGIITRAGIVKGRMSR-FMAVLTDGTAEISLLFF-RGTRFIANRVKPGTRWLVSGTVGSY 114 Query: 133 KNRIIMVHPHY-IFHNSQDVN------FPLIEAV--YSLPTGLSVDLFKKIIVEALSRLP 183 + + +VHP F + N +P+ E + +L+K I P Sbjct: 115 RG-LQLVHPDMQPFDEGEAFNGQILPVYPISEVCREAKMEQRFFRNLYKTIF-----NFP 168 Query: 184 --VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 LP ++L F + + +H P KDF+ A+ L ELL + ++ Sbjct: 169 GLTLPNACPRELTDYLHFAPVMDNLRTLHMP---KDFDSIYKAKRELKILELLPFCLRMV 225 Query: 242 LMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 R++ +K G ++ G + R +PF T Q++A+ I+ ++ K + +LQG Sbjct: 226 -KRRENQKIRGHERQIDLGNVMAAKAR-LPFQLTAGQDAALNTIIDGLNGKKQFHALLQG 283 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVG GKT+VA++A+ A AG Q +M P ILA+QH++ +K + I V ++ G P Sbjct: 284 DVGCGKTVVAMLAIMAVCGAGEQCALMVPTDILARQHFKSLKPFFDAAGIRVHLLVGATP 343 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 A ++ L + G +++IGTHALF + + KL LVI+DEQHRFGV QR L K Sbjct: 344 AAEKKVILGELQMGLCNVVIGTHALFSKDVFFAKLGLVIIDEQHRFGVSQREALLAKGDY 403 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 P +L+M+ATPIPR+L +T GD+ + I EKPAGRKPIKT ++ + + + + + + Sbjct: 404 PDMLVMSATPIPRSLAMTLYGDLKVISIKEKPAGRKPIKTRLVNAAKRESMKQFICKEAA 463 Query: 481 EGKKAYWICPQI-----EEKKESNFRSVVERFNSLHEHFTS-----------SIAIIHGR 524 G YWI ++ + ES+ RSV + N + + +A +HG+ Sbjct: 464 GGNLCYWIASRVNADGSDNADESSARSVDDIVNEMRSFIAAFGHTDANIAKLKVAGVHGQ 523 Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584 M D ++ ++ F G ++L+ATTVIEVG++V A++++I+ + FGLAQLHQLRGRVG Sbjct: 524 MDDTQRDEIIKRFAAGEIQILVATTVIEVGVNVPAANLMVIDQPDRFGLAQLHQLRGRVG 583 Query: 585 RGEEISSCILLY-HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643 RG + + C L+ ++ S RLS TEDGF IAE DLK R G + G +QSG Sbjct: 584 RGNQEAWCFLMTPEGEAAETSMERLSQFAATEDGFEIAELDLKTRGAGNLEGNEQSGAWV 643 Query: 644 FLIAQPELHD-SLLEIARKDAKHIL 667 F +HD L+ + A+HIL Sbjct: 644 FRWFD-WIHDQELISQTLERAEHIL 667 >gi|218281658|ref|ZP_03488059.1| hypothetical protein EUBIFOR_00626 [Eubacterium biforme DSM 3989] gi|218217265|gb|EEC90803.1| hypothetical protein EUBIFOR_00626 [Eubacterium biforme DSM 3989] Length = 614 Score = 330 bits (847), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 196/539 (36%), Positives = 293/539 (54%), Gaps = 19/539 (3%) Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 VY L GL + I+ EAL + +LP+ + + + K I+ A+ IH P K Sbjct: 92 VYPLIEGLKQSDIQAIMKEALKHVDILPQRVPQRYVDKYKLLDISTAYKWIHFPENEKQL 151 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 A L Y+E L Q + M + KKEI + + N+PF TK Q Sbjct: 152 H---AAIRTLKYEEFLCFQCVMQSMHE--KKEIKTKKVFSVSTVKNWISNLPFELTKDQL 206 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 S+I DIL D+ N M R++QGDVG GKT+VA I+M A AG Q+ ++AP ILA+QH Sbjct: 207 SSIDDILYDLKSTNVMFRLVQGDVGCGKTIVAQISMYANQLAGYQSALLAPTEILARQHV 266 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + K + V +T +++ LE++ +G+ ++GTHALFQ+++ ++KL LV Sbjct: 267 KNMHKLGLEATLYVSSLTAK----EKKEILEKLENGKIFNVVGTHALFQENVVFHKLGLV 322 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I DEQ RFGV+QR L +K L+M+ATPIPRT GD+DIS I P GRK + Sbjct: 323 IADEQQRFGVKQRRSLLEKGKCVDFLMMSATPIPRTYAHFLYGDMDISSIHTMPIGRKSV 382 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517 T + ++ + + EG++ Y +CP IEE E R+V E + + + Sbjct: 383 VTKYFKTASMAPCLKDVLNFIKEGRQCYVVCPAIEENDEYKMRNVFEIYEGMTKTLKDVR 442 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 I ++HG+M+ +KE M F +L++TTVIEVGIDV +AS+++I +A FGL+ LH Sbjct: 443 IGLLHGKMTSQEKEETMAKFSKHEFDILVSTTVIEVGIDVANASVMVIYDAHRFGLSTLH 502 Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637 QLRGRV R ++ C LL + RL ++ +DGF ++ DL R G+ILGI+ Sbjct: 503 QLRGRVARDKKQGYCFLLSSSN-DPQAIERLKKMEELKDGFEVSNYDLHMRGPGDILGIR 561 Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696 QSGMP + E +++E+ +DAK I+ D + +LLY+ E Q+ Sbjct: 562 QSGMPCLVFGDFEKDQAMMEMCIQDAKEIIQDQVD--------VDLLLYISNAIENAQY 612 >gi|260202115|ref|ZP_05769606.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis T46] gi|289444537|ref|ZP_06434281.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis T46] gi|289417456|gb|EFD14696.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis T46] Length = 737 Score = 330 bits (846), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 223/659 (33%), Positives = 351/659 (53%), Gaps = 68/659 (10%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEE--RIVTITGYISQHSSFQLQK---RRPYKILLNDG 97 DLL ++P S+++ R I + E +TI I+ SF ++K R+ +I + G Sbjct: 31 DLLRHYPRSYVEGAARVGIGDARPEAGEHITIVDVITDTYSFPMKKKPNRKCLRITVGGG 90 Query: 98 TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157 ++T FF + + + K+ ++G++ K + + HP ++ +S D Sbjct: 91 RNKVTATFF--NADYIMRDLTKHTKVMLSGEVGYYKGAMQLTHPAFLILDSPDGKNHGTR 148 Query: 158 AVYSLPTGLSVDLFKKIIVEALSR--LPVLP------EW-IEK------DLLQKKSFPSI 202 ++ S+ S + +++VE R P+ P W I K D+L + P Sbjct: 149 SLKSIADA-SKAISGELVVEEFERRFFPIYPASTKVQSWDIFKCVRQVLDVLDRVDDPLP 207 Query: 203 AE------------AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 AE A IH A+ ARERL +DE + Q AL+ R E Sbjct: 208 AELRAKHGLIPEDEALRAIH---LAESQSLRERARERLTFDEAVGLQWALVARRHGELSE 264 Query: 251 IGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML-RILQGDVGSGKTL 308 G + +A ++LR +PF T Q + D+L D NR L R+LQG+VGSGKT+ Sbjct: 265 SGPSAAWKSNGLAAELLRRLPFELTAGQREVL-DVLSDGLAANRPLNRLLQGEVGSGKTI 323 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITG 357 VA++AM V+AG Q ++AP +LA QH I+ V ++TG Sbjct: 324 VAVLAMLQMVDAGYQCALLAPTEVLAAQHLRSIRDVLGPLAMGGQLGGAENATRVALLTG 383 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 +M +++ IA GQ I+IGTHAL Q+++ ++ L +V+VDEQHRFGV+QR +L K Sbjct: 384 SMTAGQKKQVRAEIASGQVGIVIGTHALLQEAVDFHNLGMVVVDEQHRFGVEQRDQLRAK 443 Query: 418 ATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDE 470 A A PH+L+MTATPIPRT+ LT GD++ S + P GR+PI T +I + +D Sbjct: 444 APAGITPHLLVMTATPIPRTVALTVYGDLETSTLRALPLGRQPIATNVIFVKDKPAWLDR 503 Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---------SIAII 521 R+ + G++AY + P+I+E +++ + V + F+ +A++ Sbjct: 504 AWRRIIEEAAAGRQAYVVAPRIDESDDTDVQGGVRPSATAEGLFSRLRSAELAELRLALM 563 Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581 HGR+S DK++ M +F+ G +L+ TTVIEVG+DV +A+++++ +A+ FG++QLHQLRG Sbjct: 564 HGRLSADDKDAAMAAFRAGEVDVLVCTTVIEVGVDVPNATVMLVMDADRFGISQLHQLRG 623 Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 R+GRGE S C+L P + RL + T DGF +A+ DLK+RKEG++LG QSG Sbjct: 624 RIGRGEHPSVCLLASWVPPDTPAGQRLRAVAGTMDGFALADLDLKERKEGDVLGRNQSG 682 >gi|86742288|ref|YP_482688.1| DEAD/DEAH box helicase-like protein [Frankia sp. CcI3] gi|86569150|gb|ABD12959.1| ATP-dependent DNA helicase RecG [Frankia sp. CcI3] Length = 739 Score = 330 bits (846), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 223/742 (30%), Positives = 378/742 (50%), Gaps = 82/742 (11%) Query: 19 VGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS 77 VG + + L+ + E R + DLL + P + H R +++++++ + + ++ Sbjct: 20 VGARAAALLA------DGLELRLVGDLLGHLPRRY---HERGELTDLAD---LVVGETVT 67 Query: 78 QHSSFQLQKRRPYK--------ILLNDGTGEITLLFF---YRKTEMLKN--VFFEGRKIT 124 + + +RRP + + + DG ++L FF +R+ ++ F G+ Sbjct: 68 VQARVEKTERRPMRGTRKSMVRVTVTDGRHSLSLTFFNQSWRERDLRPGTTALFAGKVDE 127 Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNF-----PLIEAVYSLPTGLSVDLFKKIIVEAL 179 G+ + + ++ P F P+ A +P+ + + AL Sbjct: 128 FRGQRQLTNPEVQLLEPEESGEAVSGAPFANALVPIYPASAKVPSWT----LARCVRLAL 183 Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 L + + + DL + P++AEAF ++H P + + R RL +DE L Q+A Sbjct: 184 DSLDPVEDPLPDDLRSRYRLPALAEAFRLVHQPANRGEI---ASGRRRLTWDEALVLQVA 240 Query: 240 LLLMRKQFKKEIGIPI--NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 L R++ + P +G +A ++PF T Q K I ++ + M R+ Sbjct: 241 LAQRRREVEALATTPRPQRPDGLLA-AFDADLPFPLTTGQREVGKTIAAEIGRPVPMHRL 299 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQ 346 LQG+VGSGKTLVAL AM V+ GGQAV++AP LA QH +++ Sbjct: 300 LQGEVGSGKTLVALRAMLTVVDTGGQAVLLAPTETLAAQHSRSLREMLGDLARAGELGAD 359 Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 + V ++TG+M RR+AL IA G +++GTHAL D + + L L++VDEQHRF Sbjct: 360 HRATRVTLVTGSMGGRARREALAEIADGSTGLVVGTHALLHDEVIFNDLGLIVVDEQHRF 419 Query: 407 GVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465 GV+QR L + PH+L+MTATPIPRT+ +T GD+++S++TE PAGR PI T ++P Sbjct: 420 GVEQRDALRARGRRPPHLLVMTATPIPRTVAMTVFGDLEVSELTELPAGRSPIGTFVVPA 479 Query: 466 NR---IDEVIERLKVVLSEGKKAYWICPQI---------------------EEKKESNFR 501 ++ D + R++ ++ G +AY +CP+I + + Sbjct: 480 SQRSWTDRMWGRIRDEVAAGHQAYVVCPRIGAGGEDGGGEDDPAESSAAGPDSRASRPAA 539 Query: 502 SVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 +V E L + + + + +HGR++ +E+ M+ F G +L+ATTVIEVG++V + Sbjct: 540 TVCEVLPLLVDGEFADLRVEPLHGRLAPGQREATMNRFAAGEVDVLVATTVIEVGVNVPN 599 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619 A+++++ +A+ FG++QLHQLRGRVGRG C+L ++ RLS + T DG Sbjct: 600 ATVMVVLDADRFGVSQLHQLRGRVGRGTAPGWCLLHTAAEPGSPAWERLSAVAATSDGAK 659 Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A DL QR+EG++LG QSG + L + + + L+ AR++A ++ DP L R Sbjct: 660 LARLDLAQRREGDVLGAAQSGGRRSLKLLELLRDEDLIRDAREEAGRLVDDDPGLD--RH 717 Query: 679 QSIRILLYLYQYNEAFQFIRAG 700 ++R LL + + F+ G Sbjct: 718 PALRRLLDAVLDDTSVAFLEKG 739 >gi|312872411|ref|ZP_07732480.1| ATP-dependent DNA helicase RecG [Lactobacillus iners LEAF 2062A-h1] gi|311091993|gb|EFQ50368.1| ATP-dependent DNA helicase RecG [Lactobacillus iners LEAF 2062A-h1] Length = 673 Score = 330 bits (846), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 224/700 (32%), Positives = 366/700 (52%), Gaps = 45/700 (6%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 L L P+S GVG K + LS++ DLLFY P + P ++E+ Sbjct: 6 LKVLLNPVSDLDGVGVKTAEALSQL------KIKTIYDLLFYFPRRYDSLETFP-LNELK 58 Query: 66 EERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + + V + G I S + R +K+ ++ +I ++ F+ + LK +G Sbjct: 59 DGQKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDH---DIIMVNFFNQP-WLKKQLQKGN 114 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI------EAVYSLPTGLSVDLFKKII 175 I + GK Y+ + + ++ E VYSL + + I Sbjct: 115 DIAIYGK--------------YVLASQTLSAYKIVLKEEGFEPVYSLNSHIKQKKLVSFI 160 Query: 176 VEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234 +A+ + LP LPE I + L K + +H P KD + A+ + E Sbjct: 161 SQAIEKYLPQLPEVIPQYLRDKYKLLDVKSMIIQMHQP---KDLQQVKIAQRTAIFLEFF 217 Query: 235 AGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 Q+ L L+ +K GI + ++ +I F + Q AI +IL D++ R Sbjct: 218 VFQLQLSQLLYANDQKNNGIAKKYDSSAINELKESINFQLSDDQIQAINEILADLASAKR 277 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R+LQGDVGSGKT+VA+ A+ A + AG Q +M P ILAQQH I + + Sbjct: 278 MNRLLQGDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCA 337 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++T + +++ + G +++IGTHA+ QD + + KL LVI+DEQHRFGV QR + Sbjct: 338 LLTSSTKLNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQ 397 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 L K +L M+ATPIPRTL L+ G+ +S+I + P GRK + + I + + +++ Sbjct: 398 LLNKGKMVDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLT 457 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKES 532 + L +G + Y + P I E + + ++ + + +F S +A++HG+M K Sbjct: 458 LMNEQLEQGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMGSSQKSD 517 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +MD+F +G+ K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG S C Sbjct: 518 IMDAFIHGSIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGTTQSYC 577 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 I + P + ++ RL ++ +DGF +A EDLK R EG+I G QSG+P+F + + Sbjct: 578 IFVSDPK-TDSAKKRLKIISTCDDGFALAREDLKLRGEGDIFGQAQSGIPQFKLGDIINN 636 Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692 ++ A+K++K ++ Q+P+L G+ L L +Y++ Sbjct: 637 YNIFTTAQKESKILVHQNPELV---GEEYDFLKLLMEYDD 673 >gi|154509012|ref|ZP_02044654.1| hypothetical protein ACTODO_01529 [Actinomyces odontolyticus ATCC 17982] gi|153798646|gb|EDN81066.1| hypothetical protein ACTODO_01529 [Actinomyces odontolyticus ATCC 17982] Length = 715 Score = 330 bits (845), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 216/671 (32%), Positives = 348/671 (51%), Gaps = 50/671 (7%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITG------YISQHSSFQLQKRRPYKILLND 96 DLL P + +S + E VTI ++ SS ++ ++ L D Sbjct: 33 DLLLVAPRRYYHWGRLTPLSSLREGEDVTILAEVAGAHLVANRSSSGVR----LEVALTD 88 Query: 97 GTGEITLLFFYR---KTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN- 152 G ++ FF + K ++ + G+ GK+ + ++ + HP + +D+ Sbjct: 89 GVQFLSATFFAKNQYKLAPIERLLTPGQSFLFAGKVGAYRGKLQLTHPSFEGVGGEDIER 148 Query: 153 -----FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFN 207 P+ A SL + ++ ++++ L V P+ + D+ ++ F S AE Sbjct: 149 IASRPIPIYPATGSLAS-WAIARAIGMVLDHLDDAHV-PDPVPADVRERAGFASHAECLR 206 Query: 208 IIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267 +H P +D++ AR+ LA+ E Q+ L R+ + + ++ + ++ Sbjct: 207 ALHQPETDEDYQQ---ARKALAFAEAFVLQVGLAAQRRGARAAAALASPIDAPLCERFRS 263 Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 ++PF T SQ A+ I D++ + M R+LQGDVGSGKT+VAL A+ V AG Q + Sbjct: 264 SLPFELTDSQREAVAQIGADLAGEVPMQRLLQGDVGSGKTVVALSALLQVVAAGHQGAFV 323 Query: 328 APIGILAQQHYEFIKKYTQ---NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384 AP +LA+QH ++ + V ++TG+ A RR+ + + I+ GTHA Sbjct: 324 APTEVLAEQHAASLRALLEPLGADDPDVRLLTGSTTPAARREIQSAMNAAEPLIVAGTHA 383 Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLT---QKATAPHVLLMTATPIPRTLVLTSLG 441 LFQ+S+++ L LV+VDEQHRFGV+QR L + A H L+MTATPIPRT+ +T G Sbjct: 384 LFQESVRFADLALVVVDEQHRFGVEQRAALRGAREDGRAVHELVMTATPIPRTIAMTVFG 443 Query: 442 DIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQI------ 492 D+D ++++ P+GR P+ T + ++ R +++G++ Y +CP+I Sbjct: 444 DLDDTRMSGMPSGRTPVATYLADSANAAWVERTWARAAEEIAQGRRVYVVCPRIDASDDV 503 Query: 493 ---EEKKESNFRSVVERFNSLHEHFTSSIAIIH---GRMSDIDKESVMDSFKNGTCKLLI 546 EE+ SV E L H S IH GR K +M+ F G LL+ Sbjct: 504 ADAEEEGARPLASVEEVAAYLRSHPALSGIAIHELTGRTPSPVKAQIMEDFSTGRAPLLV 563 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 ATTVIEVG+DV +A++++I +A+ FGLAQLHQLRGRVGR S CI ++ L+ + Sbjct: 564 ATTVIEVGVDVSEATLMVILDAQQFGLAQLHQLRGRVGRSSLPSLCIAMHRHELTDSGRA 623 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP---KFLIAQPELHDSLLEIARKDA 663 RL +T DGF +AE DL+ RKEG++LG QSG +FL + + ++L+ A+ +A Sbjct: 624 RLQAFADTTDGFELAEADLRLRKEGDVLGAGQSGTATHLRFLSVRRD--EALIRRAKGEA 681 Query: 664 KHILTQDPDLT 674 + +L QDP L Sbjct: 682 ETLLEQDPMLA 692 >gi|260587797|ref|ZP_05853710.1| ATP-dependent DNA helicase RecG [Blautia hansenii DSM 20583] gi|260542062|gb|EEX22631.1| ATP-dependent DNA helicase RecG [Blautia hansenii DSM 20583] Length = 636 Score = 330 bits (845), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 207/630 (32%), Positives = 332/630 (52%), Gaps = 23/630 (3%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP-KISEISEERIVT 71 + +G+G+K L+K+ T D L Y+P + D + P +S+++ + Sbjct: 12 IRNIKGIGEKTEKLLAKL------GITTVGDFLRYYPREY-DEYTEPVGVSQVTAGKKCA 64 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + G I+ + R L +Y L+N G G + Sbjct: 65 VMGRITGKVGVRNTGRLTIVTATLKEENSFLQLTWY-NMPFLRNTLRSGGFYIFRGMVTD 123 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191 R M P + +Y L GL+ L K I + L ++ E++ + Sbjct: 124 KNGRKTMEQPEIFKREDYKALLHSLYPIYGLTKGLTNKLMVKTIHQILENKEIVQEYLPE 183 Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251 + A + IH P+ KD RL +DE L +++ +M+++ + Sbjct: 184 EYRNYYQLAEYNYAVSHIHFPKDKKDLLL---GHHRLVFDEFLLFILSIRMMKEKTQD-- 238 Query: 252 GIPINVEGKI---AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 +P + K + ++ +P+ T +Q+ +I +DM+ M R++QGDVGSGKT+ Sbjct: 239 -MPNSFAIKPVWETENVIDGLPYPLTNAQKRVWNEIERDMTGHTLMSRLVQGDVGSGKTI 297 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE--IITGNMPQAHRRK 366 +A +AM A G QA +M P +LA+QH++ ++K + Q+ ++ ++TG+ +R+ Sbjct: 298 MAFLAMLLAAFNGYQAALMVPTEVLAKQHFKEMEKLLKEHQLPLKAVLLTGSNTAKEKRE 357 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426 +IA G+A +IIGTHAL Q+ ++Y L LVI DEQHRFGVQQR L++K T PHVL+M Sbjct: 358 RCAQIASGEAKLIIGTHALIQEKVEYENLALVITDEQHRFGVQQREDLSKKGTRPHVLVM 417 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486 +ATPIPRTL + GD+DIS + E PA R PIK ++ + ++ + EG++ Y Sbjct: 418 SATPIPRTLAIILYGDLDISVMDELPAKRLPIKNCVVDTSYRPRAYHFIQKQVEEGRQVY 477 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKL 544 ICP +EE + + +V++ L E S S+A +HGRM +K +M++F ++ Sbjct: 478 VICPMVEESEGLDAENVIDYTQILKEALPSDISVAYLHGRMKAGEKNKIMEAFAANEIQV 537 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 L++TTVIEVG++V +A+++++ENAE FGLAQLHQLRGRVGRGE S CI + + Sbjct: 538 LVSTTVIEVGVNVPNATVMMVENAERFGLAQLHQLRGRVGRGEHQSYCIFV-QGGQDTET 596 Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 RL +L + DGF IA EDL+ R G+ Sbjct: 597 KERLEILVKSNDGFQIAGEDLRLRGPGDFF 626 >gi|325911773|ref|ZP_08174177.1| ATP-dependent DNA helicase RecG [Lactobacillus iners UPII 143-D] gi|325476279|gb|EGC79441.1| ATP-dependent DNA helicase RecG [Lactobacillus iners UPII 143-D] Length = 673 Score = 330 bits (845), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 224/700 (32%), Positives = 367/700 (52%), Gaps = 45/700 (6%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 L L P+S GVG K + LS++ DLLFY P + P ++E+ Sbjct: 6 LKVLLNPVSDLDGVGVKTAEALSQL------KIKTIYDLLFYFPRRYDSLEIFP-LNELK 58 Query: 66 EERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + + V + G I S + R +K+ ++ +I ++ F+ + LK +G Sbjct: 59 DGQKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDH---DIIMVNFFNQP-WLKKQLQKGN 114 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI------EAVYSLPTGLSVDLFKKII 175 I + GK Y+ + + ++ E VYSL + + I Sbjct: 115 DIAIYGK--------------YVLASQTLSAYKIVLKEEGFEPVYSLNSHIKQKKLVSFI 160 Query: 176 VEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234 +A+ + LP LPE I + L K + +H P KD + A+ + E Sbjct: 161 NQAIEKYLPQLPEVIPQYLRDKYKLLDVQSMIIQMHQP---KDLQQVKVAQRTAIFLEFF 217 Query: 235 AGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 Q+ L L+ +K GI + ++ +I F + Q AI +IL D++ R Sbjct: 218 VFQLQLSQLLYANDQKNNGIAKKYDSSAINELKESINFQLSDDQIQAICEILADLASAKR 277 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R+LQGDVGSGKT+VA+ A+ A + AG Q +M P ILAQQH I + + Sbjct: 278 MNRLLQGDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCA 337 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++T + +++ + G +++IGTHA+ QD + + KL LVI+DEQHRFGV QR + Sbjct: 338 LLTSSTKLNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQ 397 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 L K +L M+ATPIPRTL L+ G+ +S+I + P GRK + + I + + +++ Sbjct: 398 LLNKGKMVDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLT 457 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKES 532 + L +G + Y + P I E + + ++ + + +F S +A++HG+M+ K Sbjct: 458 LMNEQLEQGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMASSQKSD 517 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +MD+F +G+ K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG S C Sbjct: 518 IMDAFIHGSIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGTTQSYC 577 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 I + P + ++ RL ++ +DGF +A EDLK R EG+I G QSG+P+F + + Sbjct: 578 IFVSDPK-TDSAKKRLKIISTCDDGFALAREDLKLRGEGDIFGQAQSGIPQFKLGDIINN 636 Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692 ++ A+K++K ++ Q+P+L G+ L L +Y++ Sbjct: 637 YNIFTTAQKESKILVHQNPELV---GEEYDFLKLLMEYDD 673 >gi|19110483|dbj|BAB85789.1| RecG [Corynebacterium glutamicum] Length = 707 Score = 329 bits (844), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 214/641 (33%), Positives = 342/641 (53%), Gaps = 62/641 (9%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS-QHSSFQLQKRRPYKILLNDGTGEI 101 +LL +H + I + +E +VTI G ++ S+ + YK+ + T I Sbjct: 33 ELLRHHVRKYSHHGSGVGIGDATEGDLVTIVGQVAFAKQSYTQSGKMLYKVTVLTETERI 92 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI----------------- 144 + FF K + + EG + TGK+K +N + HP +I Sbjct: 93 GISFFGAK--HIPRLLPEGTRALFTGKVKFFRNEPQLSHPEFIVIPDPGSGRRLTATGGM 150 Query: 145 -----FHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPVLPE---WIEKD 192 + + ++V L++ +Y+ ++ + L +PV+ + W K Sbjct: 151 KSLAAYGDVEEVALRLVDREYIPIYAGTATMTTWRIMAAVQRVLETMPVIKDHIGWCPK- 209 Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252 + PS A ++ P + Y+E L+ + + R K Sbjct: 210 ACPVSTRPSAAFTIQAMNLPARLSTV---------CKYNEALSLATVMAIRRADTKNRKA 260 Query: 253 IPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 P+ K Q +L + + F T Q+ ++I D+ Q+ M R+LQG+VGSGKT+V+L Sbjct: 261 PPMPRALKGHQHMLIDALNFQLTVGQKQCDREISADIEQRVPMSRLLQGEVGSGKTIVSL 320 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT--QIIVEIITGNMPQAHRRKALE 369 IAM A+++G Q ++AP +LA QH + K + I V ++TG+MP +++AL Sbjct: 321 IAMLQAIDSGRQCAMLAPTEVLATQHARSLSKTLDDAGLDINVVLLTGSMPTGAKKEALL 380 Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLLM 426 I G A I++GTHAL QD+++++ L LV+VDEQHRFGV+QR +L K PH+L+M Sbjct: 381 EIISGDADIVVGTHALIQDTVEFFDLGLVVVDEQHRFGVEQRDQLRTKGREGLTPHLLVM 440 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGK 483 TATPIPRT+ +T GD+ +S + E P GR+PI+T +IP ++ + ER+ + G+ Sbjct: 441 TATPIPRTIAMTVFGDLAVSTLRELPGGRRPIQTSVIPDHKPGWVKRGWERIGEEVLAGR 500 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541 +AY +CP+IE + V+E L E ++ ++HGRM K+SVM F G Sbjct: 501 QAYVVCPRIEGEG-----GVLEIHAYLSEQVYPGLNVGMLHGRMDTDLKDSVMQEFAQGE 555 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L+ATTVIEVGIDV +A++++I AE FG++Q+HQLRGRVGRG+ S C+L H Sbjct: 556 IDILVATTVIEVGIDVANATVMLIREAERFGVSQIHQLRGRVGRGQHDSLCLL--HTTFD 613 Query: 602 KNS--YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 ++S RL+ + T DGF ++E DL+ R+EG++LG +QSG Sbjct: 614 EDSPQGQRLAAISTTTDGFQLSELDLQVRQEGDVLGTRQSG 654 >gi|111225168|ref|YP_715962.1| ATP-dependent DNA helicase recG [Frankia alni ACN14a] gi|111152700|emb|CAJ64443.1| ATP-dependent DNA helicase recG [Frankia alni ACN14a] Length = 725 Score = 329 bits (844), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 216/685 (31%), Positives = 352/685 (51%), Gaps = 69/685 (10%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS--QHSSFQLQKRRPYKILLNDGTGE 100 DLL + P + +R ++++ VT+ + + + +R ++ + DGT Sbjct: 31 DLLAHLPRRYHERGELTDLADLVVGDTVTVQARVEKIERRPMRGSRRSMLRVTVTDGTHP 90 Query: 101 ITLLFF---YRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ---DVN-- 152 + L FF +R+ ++ G GK+ + + + +P S+ DV Sbjct: 91 LALTFFNQSWRERDLRA-----GTTALFAGKVDEYRGHRQLTNPEVQLLESEVEGDVTGA 145 Query: 153 ------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206 P+ A +P+ + + AL L L + + +DL ++ ++AEA+ Sbjct: 146 QFANALVPIYPAAAKVPSWT----LARCVRLALDSLGPLEDPLPEDLRRRHRLCTLAEAY 201 Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK--QFKKEIGIPINVEGKIAQK 264 ++H P + + R+RL +DE L Q+AL R+ Q +G +A Sbjct: 202 RLVHQPSSRVEV---ATGRKRLTWDEALVLQVALARRRRDVQALATTARSARPDGLLA-A 257 Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324 +PF T Q I D+ + M R+LQG+VGSGKT+VAL +M V+AGGQA Sbjct: 258 FDAALPFPLTAGQREVGATIAADIGRPVPMHRLLQGEVGSGKTVVALRSMLIVVDAGGQA 317 Query: 325 VIMAPIGILAQQHYEFIKKY-------------TQNTQIIVEIITGNMPQAHRRKALERI 371 V++AP LA QHY +++ Q T++I ++TG+M RR+AL I Sbjct: 318 VLLAPTETLAAQHYRSLREMLGDLARSGELGADEQATRVI--LVTGSMGARARREALADI 375 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATP 430 + G A +++GTHAL + + + L L+IVDEQHRFGV+QR L + PH+L+MTATP Sbjct: 376 SEGSAGLVVGTHALLHEEVVFADLGLIIVDEQHRFGVEQRDALRARGRRPPHLLVMTATP 435 Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI---NRIDEVIERLKVVLSEGKKAYW 487 IPRT+ +T GD+++S++TE P+GR PI T ++P + D + R++ ++ G++AY Sbjct: 436 IPRTVAMTVFGDLEVSELTELPSGRSPIATFVVPAAIRSWADRMWGRIRDEVAAGRQAYV 495 Query: 488 ICPQI-------------EEKKESNFRSVVERFNSLHEHFTSSIA-----IIHGRMSDID 529 +CP+I +E R + L + +A +HGR+ Sbjct: 496 VCPRIGGDSLDDDPGALSDEPAGQTGRPAATVTDVLPQLMDGELAGLRVEPLHGRLPAAQ 555 Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589 +E+ M F G +L+ATTVIEVG++V +A+++++ +A+ FG++QLHQLRGRVGRG Sbjct: 556 REATMTRFAQGEIDVLVATTVIEVGVNVPNATVMVVLDADRFGVSQLHQLRGRVGRGTAP 615 Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649 C+L ++ RL + T DG +A DL QR+EG++LG QSG + L Sbjct: 616 GWCLLHTATDQGTPAWHRLGAVAATNDGAELARLDLAQRREGDVLGAAQSGGRRSLKLLA 675 Query: 650 ELHD-SLLEIARKDAKHILTQDPDL 673 L D L+ AR +A ++ DP+L Sbjct: 676 LLRDEDLIREARTEATRLVDADPEL 700 >gi|213964624|ref|ZP_03392824.1| ATP-dependent DNA helicase RecG [Corynebacterium amycolatum SK46] gi|213952817|gb|EEB64199.1| ATP-dependent DNA helicase RecG [Corynebacterium amycolatum SK46] Length = 716 Score = 329 bits (844), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 220/655 (33%), Positives = 346/655 (52%), Gaps = 68/655 (10%) Query: 71 TITGYISQHS-----SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125 TIT + HS +F +R+P KI ++DG + F E L+N+ G ++ + Sbjct: 63 TITTVVEVHSIAPAPAFA-DRRKPLKIYVSDGVRILPAAIF--GAEWLRNMLHPGVRLLI 119 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL--PTGLSVDLFK--KIIVEALSR 181 G + + +N + + ++V+ +++A S+ TG L K K I E + R Sbjct: 120 VGTLSEFRNELQL----------KNVDCMVLKADGSVGAATGKLATLTKTAKGIAE-MQR 168 Query: 182 L---PVLP---------------------EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 L P LP EW+ LQ P+ E + + Sbjct: 169 LLTRPYLPIYRGRKGVAGIHLALYMQRILEWLP---LQPDPLPATPEGLTDFDSALRGAH 225 Query: 218 FEWTSP---ARERLAYDELLAGQIALLLMRKQFKKEIGIP--INVEGKIAQKILRNIPFS 272 F + A RL YDE L Q+A+ RK+ + + P + V G + ++ R +PFS Sbjct: 226 FPSIAGPDIALARLKYDEALELQLAVG-ARKRTQASLTAPACMEVAGGLRDELRRGLPFS 284 Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332 T Q + DI DM++ N M R+L G+VGSGKT+VAL+ M AV+A Q ++AP + Sbjct: 285 LTDGQVAVAADIAHDMARPNPMNRLLAGEVGSGKTVVALLGMLQAVDASRQCAMLAPTEV 344 Query: 333 LAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 LAQQHY + + + V ++TG+M RR L +G+A I++GTHAL + + Sbjct: 345 LAQQHYRSLTAMLEQAGVAVTVRLLTGSMSTKERRATLLEAVNGEADIVVGTHALLSEGV 404 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISK 447 +++ L LV+VDEQHRFGV+QR +L + PH+L+M+ATPIPRT+ +T GD+ +S+ Sbjct: 405 EFFDLGLVVVDEQHRFGVRQRDQLRSRGRGGMTPHLLVMSATPIPRTVAMTIFGDLAVSQ 464 Query: 448 ITEKPAGRKPIKTVIIPI---NRID-EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503 +TE P GR+ I++ ++P R + ER+ +++G +A+ +CP+I +E Sbjct: 465 LTELPRGRQEIQSFVVPTLEKPRWEARTWERIAEEVAKGNRAFIVCPRITRDEEQFLDES 524 Query: 504 VER-FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 VE F+ + I+ +HG M+ DK+ VM +F G +L++TTVIEVG+DV +A+ Sbjct: 525 VEAVFDRARKKLPGVRISQLHGNMAPEDKDRVMQAFATGQLDVLVSTTVIEVGVDVPEAT 584 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621 I++I AE +G++Q+HQLRGRVGRG++ C L H TRL + T DG +A Sbjct: 585 IMMIRRAESYGISQIHQLRGRVGRGDQGGLCFLCTHTHSQTPERTRLERIAATTDGIQLA 644 Query: 622 EEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKHILTQDPDLTS 675 E DL R G++LG QSG+ L + ++E R DA +L + L + Sbjct: 645 ELDLATRSFGDLLGDDQSGLATGLGLVDLTTDGEIIERTRHDATALLDGNEKLVA 699 >gi|328955650|ref|YP_004372983.1| ATP-dependent DNA helicase RecG [Coriobacterium glomerans PW2] gi|328455974|gb|AEB07168.1| ATP-dependent DNA helicase RecG [Coriobacterium glomerans PW2] Length = 727 Score = 329 bits (843), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 217/635 (34%), Positives = 327/635 (51%), Gaps = 32/635 (5%) Query: 91 KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD 150 +I L D TG + + FF K + G ++ V GKI+ M PHY + Sbjct: 100 EISLVDATGVLQVAFF--KQPWIARQIAIGDRLAVLGKIEFAYGFKQMTSPHYERLDPAA 157 Query: 151 VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIH 210 ++ V+ + GLS ++II AL RL + I DL + S A A IH Sbjct: 158 TTGSILP-VHKVSEGLSTAWMRRIISVALGRLGSFADAIPADLRARHGLMSAARAMRAIH 216 Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270 P F AR RLAYDE+L Q+AL L + ++ + + ++P Sbjct: 217 FP---VSFVERDAARRRLAYDEILILQLALRLRNDANLLGVRPSAHLVASHVRALRESLP 273 Query: 271 FSPTKSQESAIKDILQDMSQKNRML-RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 F T Q+ A +IL+DM+ +R++ R+L GDVG+GKT VA I +A + QA +MAP Sbjct: 274 FQLTDEQQRASDEILRDMADPDRIMNRLLLGDVGTGKTAVACIGLACVADTETQACVMAP 333 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 G+LA+QH + ++TG+ A R + R+A G+ ++ GTHA+ + Sbjct: 334 TGVLAEQHAARCGSILDKAGVTWALLTGSTTPAERADIVSRLADGKLCVLFGTHAVLGED 393 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L LV++DEQHRFGV QR L K +L+MTATPIPRT+ L+ GD+D S I Sbjct: 394 VCFRHLSLVVIDEQHRFGVNQRNMLRAKGIGADLLVMTATPIPRTMALSVFGDLDTSVIR 453 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---------- 499 +P + T ++ + D I L+ ++ G++AY ICP +E + + Sbjct: 454 HRPIAGAGVATRVLSESSRDIAIGALRDAIARGEQAYVICPLVEPTDQGDDLEEVFEDED 513 Query: 500 -----------FRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 R+V + L + T+ IA +HGRM +K+ V+ +F++G +L++ Sbjct: 514 ARDSGSSQAAPLRNVEQEAERLRQVLGTARIARLHGRMPPREKDRVITAFRSGEIDVLVS 573 Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSY 605 TTV+EVG+DV A++++IEN E FGLA LHQLRGRVGRG +C +L L+ + Sbjct: 574 TTVVEVGVDVGGATVMVIENGERFGLATLHQLRGRVGRGSTPGTCFILTRAAGKLNVQAR 633 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665 RL L+ T DGF +AE DL+ R EGEILG++Q G + L+E A DA Sbjct: 634 VRLRALERTSDGFALAEMDLRLRHEGEILGLRQHGGVSLRYVDFDADTDLIEWAHDDAIE 693 Query: 666 ILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 +L L S R +R L + +Y + F+ + G Sbjct: 694 LLGSSGGLRSARTVPLR-LEVIDRYGDVFKEVSGG 727 >gi|312874448|ref|ZP_07734478.1| ATP-dependent DNA helicase RecG [Lactobacillus iners LEAF 2052A-d] gi|311090060|gb|EFQ48474.1| ATP-dependent DNA helicase RecG [Lactobacillus iners LEAF 2052A-d] Length = 673 Score = 329 bits (843), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 224/700 (32%), Positives = 366/700 (52%), Gaps = 45/700 (6%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 L L P+S GVG K + LS++ DLLFY P + P ++E+ Sbjct: 6 LKVLLNPVSDLDGVGVKTAEALSQL------KIKTIYDLLFYFPRRYDSLEIFP-LNELK 58 Query: 66 EERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + + V + G I S + R +K+ ++ +I ++ F+ + LK +G Sbjct: 59 DGQKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDH---DIIMVNFFNQP-WLKKQLQKGN 114 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI------EAVYSLPTGLSVDLFKKII 175 I + GK Y+ + + ++ E VYSL + + I Sbjct: 115 DIAIYGK--------------YVLASQTLSAYKIVLKEEGFEPVYSLNSHIKQKKLVSFI 160 Query: 176 VEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234 +A+ + LP LPE I + L K + +H P KD + A+ + E Sbjct: 161 NQAIEKYLPQLPEVIPQYLRDKYKLLDVQSMIIQMHQP---KDLQQVKVAQRTAIFLEFF 217 Query: 235 AGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 Q+ L L+ +K GI + ++ +I F + Q AI +IL D++ R Sbjct: 218 VFQLQLSQLLYANDQKNNGIAKKYDSSAINELKESINFQLSDDQIQAICEILADLASAKR 277 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R+LQGDVGSGKT+VA+ A+ A + AG Q +M P ILAQQH I + + Sbjct: 278 MNRLLQGDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCA 337 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++T + +++ + G +++IGTHA+ QD + + KL LVI+DEQHRFGV QR + Sbjct: 338 LLTSSTKLNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQ 397 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 L K +L M+ATPIPRTL L+ G+ +S+I + P GRK + + I + + +++ Sbjct: 398 LLNKGKMVDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLT 457 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKES 532 + L +G + Y + P I E + + ++ + + +F S +A++HG+M K Sbjct: 458 LMNEQLEQGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMGSSQKSD 517 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +MD+F +G+ K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG S C Sbjct: 518 IMDAFIHGSIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGTTQSYC 577 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 I + P + ++ RL ++ +DGF +A EDLK R EG+I G QSG+P+F + + Sbjct: 578 IFVSDPK-TDSAKKRLKIISTCDDGFALAREDLKLRGEGDIFGQAQSGIPQFKLGDIINN 636 Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692 ++ A+K++K ++ Q+P+L G+ L L +Y++ Sbjct: 637 YNIFTTAQKESKILVHQNPELV---GEEYDFLKLLMEYDD 673 >gi|309804299|ref|ZP_07698376.1| ATP-dependent DNA helicase RecG [Lactobacillus iners LactinV 11V1-d] gi|308163702|gb|EFO65972.1| ATP-dependent DNA helicase RecG [Lactobacillus iners LactinV 11V1-d] Length = 673 Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 224/700 (32%), Positives = 366/700 (52%), Gaps = 45/700 (6%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 L L P+S GVG K + LS++ DLLFY P + P ++E+ Sbjct: 6 LKVLLNPVSDLDGVGVKTAEALSQL------KIKTIYDLLFYFPRRYDSLETFP-LNELK 58 Query: 66 EERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + + V + G I S + R +K+ ++ +I ++ F+ + LK +G Sbjct: 59 DGQKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDH---DIIMVNFFNQP-WLKKQLQKGN 114 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI------EAVYSLPTGLSVDLFKKII 175 I + GK Y+ + + ++ E VYSL + + I Sbjct: 115 DIAIYGK--------------YVLASQTLSAYKIVLKEEGFEPVYSLNSHIKQKKLVSFI 160 Query: 176 VEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234 +A+ + LP LPE I + L K + +H P KD + A+ + E Sbjct: 161 SQAIEKYLPQLPEVIPQYLRDKYKLLDVKSMIIQMHQP---KDLQQVKVAQRTAIFLEFF 217 Query: 235 AGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 Q+ L L+ +K GI + ++ +I F + Q AI +IL D++ R Sbjct: 218 VFQLQLSQLLYANDQKNNGIAKKYDSSAINELKESINFQLSDDQIQAICEILADLASAKR 277 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R+LQGDVGSGKT+VA+ A+ A + AG Q +M P ILAQQH I + + Sbjct: 278 MNRLLQGDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCA 337 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++T + +++ + G +++IGTHA+ QD + + KL LVI+DEQHRFGV QR + Sbjct: 338 LLTSSTKLNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQ 397 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 L K +L M+ATPIPRTL L+ G+ +S+I + P GRK + + I + + +++ Sbjct: 398 LLNKGKMVDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLT 457 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKES 532 + L +G + Y + P I E + + ++ + + +F S +A++HG+M K Sbjct: 458 LMNEQLEQGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMGSSQKSD 517 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +MD+F +G+ K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG S C Sbjct: 518 IMDAFIHGSIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGTTQSYC 577 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 I + P + ++ RL ++ +DGF +A EDLK R EG+I G QSG+P+F + + Sbjct: 578 IFVSDPK-TDSAKKRLKIISTCDDGFALAREDLKLRGEGDIFGQAQSGIPQFKLGDIINN 636 Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692 ++ A+K++K ++ Q+P+L G+ L L +Y++ Sbjct: 637 YNIFTTAQKESKILVHQNPELL---GEEYDFLKLLMEYDD 673 >gi|296171354|ref|ZP_06852710.1| DNA helicase RecG [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894185|gb|EFG73943.1| DNA helicase RecG [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 739 Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 220/697 (31%), Positives = 363/697 (52%), Gaps = 80/697 (11%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERI-----VTITGYISQHSSFQLQK---RRPYKILL 94 DLL ++P ++ + R + ++R +TI I++ ++ ++K + ++I L Sbjct: 31 DLLRHYPRTYTEGATR---WDADDQRPPAGEHITIVDTIAETKTWPMKKTPKKDCHRITL 87 Query: 95 NDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-- 152 G ++T FF LK +G K+ ++G++ KN + + HP ++ +S D Sbjct: 88 GSGRNKVTATFF--NANYLKKDLTKGAKVMLSGEVGFFKNVMQLTHPAFLILDSPDGKNR 145 Query: 153 ----------------------------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184 FP+ A + S D+F+ + + L L Sbjct: 146 GTSSLKNIAIASQATSGELQMEAFERAFFPIYPATTKVQ---SWDIFR-CVRQVLDVLDP 201 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 +P+ + +L + S A IH A+D ARERL +DE + Q AL+ R Sbjct: 202 VPDPLPAELRGRYDLVSEDRALRDIH---LAEDESARRRARERLTFDEAVGLQWALVARR 258 Query: 245 KQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 E G P ++ +++ +PF T Q ++ +++S M R+LQG+VG Sbjct: 259 HSELSESGPPAPPRPDGLSAELMARLPFELTAGQREVLEVFTKELSATRPMNRLLQGEVG 318 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIV 352 SGKT++A++AM V+AG Q ++AP +LA QH I + V Sbjct: 319 SGKTILAVLAMLQLVDAGYQCALLAPTEVLAAQHLRSIDDVLGPLAMAGQLGGADNATRV 378 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 ++TG+M A +++ + +A GQA I++GTHAL QD+++++ L +V+VDEQHRFGV+QR Sbjct: 379 ALLTGSMTAAQKKQVRDEVASGQAGIVVGTHALLQDAVEFHNLGMVVVDEQHRFGVEQRD 438 Query: 413 KLTQKA---TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-- 467 +L KA PH+L+MTATPIPRT+ LT GD++ S + E P GR+PI + +I + Sbjct: 439 QLRAKARPGVTPHLLVMTATPIPRTVALTVYGDLETSTLRELPRGRQPITSNVIFVKDKP 498 Query: 468 --IDEVIERLKVVLSEGKKAYWICPQIEE----KKESNFRSVVERFNSLHEHFTSS---- 517 +D R+ +S G++AY + P+I+E +KE E L+ S Sbjct: 499 AWLDRAWRRITEEVSAGRQAYVVAPRIDENDEPEKEEPSAKPSETAEGLYARLRSGELAN 558 Query: 518 --IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + ++HGR+S K++ M +F+ G +L+ TTVIEVG+DV +A+++++ +A+ FG++Q Sbjct: 559 LRLGLMHGRLSAEQKDAAMAAFRAGEIDVLVCTTVIEVGVDVPNATVMLVMDADRFGISQ 618 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGR+GRG S C+L + + RLS + T DGF +A+ DLK+R+EG++LG Sbjct: 619 LHQLRGRIGRGRHPSLCLLASWVSPASPAGRRLSAVAATLDGFALADLDLKERREGDVLG 678 Query: 636 IKQSGMPKFL-IAQPELHDSLLEIARKDAKHILTQDP 671 QSG L + H ++E AR +DP Sbjct: 679 RNQSGRAVNLRLLSLADHREVIEAARDFCVRTYAEDP 715 >gi|254821178|ref|ZP_05226179.1| ATP-dependent DNA helicase RecG [Mycobacterium intracellulare ATCC 13950] Length = 739 Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 221/722 (30%), Positives = 371/722 (51%), Gaps = 87/722 (12%) Query: 19 VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI-----VTIT 73 VG K L ++ N DLL ++P S+ + R + +ER +TI Sbjct: 12 VGGKVVELLDEVFGIRTVN-----DLLRHYPRSYTEGASR---WDADDERPPAGEHITIV 63 Query: 74 GYISQHSSFQLQK---RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 I+ +F ++K + ++I L G ++T FF +K G K+ ++G++ Sbjct: 64 DTITDTETFPMKKTPKKVCHRITLGSGRNKVTATFF--NANYIKKDLTTGTKVMLSGEVG 121 Query: 131 KLKNRIIMVHPHYIFHNSQD------VNFPLIEAVYSLPTGLSV-DLFKK---------- 173 +N + + HP ++ ++ D V+ I TG + D +++ Sbjct: 122 FFRNVMQLTHPAFLLLDTPDGKNRGTVSLKSIANASHATTGEDIADAYQRHFFPIYAASA 181 Query: 174 ---------IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIH----NPRKAKDFEW 220 + + L L +P+ + +DL K S +A IH PR+ + Sbjct: 182 KLQSWTIFATVRQVLDVLDPVPDPLPEDLRAKFGLVSEDQALRDIHLAESEPRRQQ---- 237 Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-IAQKILRNIPFSPTKSQES 279 ARERL +DE + Q AL+ R E G P +A ++L +PF T Q Sbjct: 238 ---ARERLTFDEAVGLQWALVARRHGELSESGPPAPPRSDGLAAELLGRLPFELTAGQRD 294 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 + + + ++ + R+LQG+VGSGKT+V+++AM V+AG Q ++AP +LA QH Sbjct: 295 VLGVLSEGLASNRPLNRLLQGEVGSGKTIVSVLAMLQMVDAGYQCALLAPTEVLAAQHLR 354 Query: 340 FIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 I+ + V +++G+M A +++ IA G+ I++GTHAL QD Sbjct: 355 SIRDVLGPLAMAGQLGGADRATRVALLSGSMTAAQKKQIRSEIAGGEVGIVVGTHALLQD 414 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKA---TAPHVLLMTATPIPRTLVLTSLGDIDI 445 ++++ L +V+VDEQHRFGV+QR +L KA PH+L+MTATPIPRT+ LT GD++ Sbjct: 415 AVEFDNLGMVVVDEQHRFGVEQRDQLRAKARPGVTPHLLVMTATPIPRTVALTVYGDLET 474 Query: 446 SKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEK-----K 496 S + E P GR+PI + +I + + +R+ ++ G++AY + P+I+E + Sbjct: 475 STLRELPRGRQPITSNVIFVKDKPTWLGRAWQRISEEVAAGRQAYVVAPRIDEDDDPGAQ 534 Query: 497 ESNFRSVVERFNSLHEHFTSS------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550 E N ++ E L+ S + ++HGR+S +K++VM +F+ G +L+ TTV Sbjct: 535 EQNAKAP-ETAEGLYARLRSGELAHLRLGLMHGRLSGDEKDAVMAAFRAGEIDVLVCTTV 593 Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610 IEVG+DV +A+++++ +A+ FG++QLHQLRGR+GRG S C+ + RL+ Sbjct: 594 IEVGVDVPNATVMLVMDADRFGISQLHQLRGRIGRGRHPSLCLFASWSAPDSPAGRRLAA 653 Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKHILTQ 669 + T DGF +A+ DLK+R+EG++LG QSG L + H +E AR+ ++ Sbjct: 654 VAGTLDGFALADLDLKERREGDVLGRNQSGRAITLRLLSLADHLEYIEAAREFCVRTYSE 713 Query: 670 DP 671 DP Sbjct: 714 DP 715 >gi|325068483|ref|ZP_08127156.1| ATP-dependent DNA helicase RecG [Actinomyces oris K20] Length = 752 Score = 328 bits (841), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 233/757 (30%), Positives = 370/757 (48%), Gaps = 94/757 (12%) Query: 19 VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78 VGK+ + L+K ET DLL P + + + E TI + + Sbjct: 5 VGKRTAAQLAK-----QGVET-GADLLRLLPRRYDTWGELTDMRTLVEGEQATIQAQVVR 58 Query: 79 HSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNV--FFEGRKITVTGKIKKLK 133 SS + + R ++ + DG + L+ F +M G + ++GK+ + Sbjct: 59 ASSRRTRSGRVPALMEATVTDGASTMDLVQFGAAGQMRTRAAQLAPGTTVLLSGKVGLHR 118 Query: 134 NRIIMVHPHYIFHNSQDVN---------FPLIEAVYSLPTGLSVDLFKKII--VEALSRL 182 R + +P + D P+ +LP+ L + ++ +E+ Sbjct: 119 GRKQLSNPRLYVLDELDEGEREALLARPMPIYPGTEALPSWLVAKAVRSVLDQLESGDVA 178 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 LPE +L ++ A+ +H P + +W + AR+RL ++E L Q+AL Sbjct: 179 DPLPE----ELRREAGLVDAYTAYRWVHRPEDSG--QWKA-ARKRLRHEEALILQVALAQ 231 Query: 243 MR---KQFKKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 R + + + P+ EG + + +P+ T Q+ ++I D+++ M R+L Sbjct: 232 RRAHHEATRTAVAWPVPETEGSLRADLDARLPYDLTAGQKRVGEEISADLARTVPMQRLL 291 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII------- 351 QGDVGSGKTLVAL AM V GGQA ++AP +LA QH+ ++ + Sbjct: 292 QGDVGSGKTLVALRAMLQVVGGGGQAALLAPTEVLAAQHHSSLEVVLGPMARLGMLGGAE 351 Query: 352 ----VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407 V ++TG+ P A RR+ L +A G+ I++GTHAL D++Q L LV+VDEQHRFG Sbjct: 352 HATRVHLLTGSTPAAQRRRILTELAAGEPAIVVGTHALLSDTVQIPFLGLVVVDEQHRFG 411 Query: 408 VQQRLKL----------TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 V QR L T ++ PH+L+MTATPIPRT+ +T GD+ S + E PAGR Sbjct: 412 VAQRDALRERGGLTDPATGQSHTPHLLVMTATPIPRTIAMTVFGDLATSVLDELPAGRSA 471 Query: 458 IKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVE---- 505 + T ++P +R ++ + R ++ G + Y +CP+IE E + + VE Sbjct: 472 VPTHLVPWSRTSWVEGIWRRAAKEVASGGRVYVVCPRIEVDDEPRQTPMDGATTVETDDG 531 Query: 506 -RFNSLHEHFTSS--------------------------IAIIHGRMSDIDKESVMDSFK 538 + +L E S + ++ GRMS DK + M F Sbjct: 532 PKQEALAEEGDGSHPDRPLAAVEEWRRRLEGEPALEGIGVGVLTGRMSSDDKAASMADFA 591 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 +G +L++TTVIEVG+DV +AS+++I +AE FGL+QLHQLRGRVGRG S C+ + Sbjct: 592 SGATPVLVSTTVIEVGVDVPEASMMVILDAERFGLSQLHQLRGRVGRGSRPSLCVAVTGA 651 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLE 657 + ++ RL +T DGF +AE DL+ R EG++LG QSG L D+ L+ Sbjct: 652 EVGSTAFHRLKAFASTTDGFALAEADLELRSEGDVLGASQSGHASGLDLLRVTRDARLIA 711 Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694 AR+ A+ I+ DP L+ R + I+ L + ++AF Sbjct: 712 TARRQAERIVAADPQLSEHRALAAAIVERLDEESQAF 748 >gi|227501790|ref|ZP_03931839.1| RecG family helicase [Corynebacterium accolens ATCC 49725] gi|227077815|gb|EEI15778.1| RecG family helicase [Corynebacterium accolens ATCC 49725] Length = 708 Score = 328 bits (841), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 196/499 (39%), Positives = 296/499 (59%), Gaps = 32/499 (6%) Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR--ERLAYDELLA-GQIALLLMRKQF 247 ++ L ++ S+ +A IH P A P R +RL Y+E L+ G + L R Sbjct: 209 REPLDQQMIISLDQAVREIHEPGAA------GPQRAVQRLKYNEALSIGLVMALRQRDAH 262 Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 + G +++L ++PF T+ Q I +I D+S M+R+LQG+VGSGKT Sbjct: 263 AHTAPAMPAILGGFREELLTHLPFELTQGQRRVITEIDDDLSGSLPMMRLLQGEVGSGKT 322 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +VA AM A++AG QA ++AP +LA QH I +V ++TG+M A +R+A Sbjct: 323 MVATCAMLQAIDAGSQAALLAPTEVLASQHAASIGTSVPEGVKVV-LLTGSMRTAEKRQA 381 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL---TQKATAPHVL 424 L I G+A+I+IGTHA+ Q+S++++ L LVIVDEQHRFGV+QR L T++ +PHVL Sbjct: 382 LLDIVSGEANIVIGTHAIIQESVEFFDLGLVIVDEQHRFGVEQRDSLRSKTREGISPHVL 441 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSE 481 +MTATPIPRT+ +T GD+ +S + E P GRKPI++ ++ R + +ER++ ++ Sbjct: 442 VMTATPIPRTIAMTIFGDLAVSTLAELPGGRKPIQSAVVAEWRPIWVARALERIREEVAH 501 Query: 482 GKKAYWICPQIEEKKESNFRSVVER-----FNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 G +AY +CP+IE E + E+ F L + I+HG+M + K+ VM S Sbjct: 502 GHQAYIVCPRIE--GEGGVLELAEQLAAGPFKGLR------VDILHGKMPN--KDEVMTS 551 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F G +L++TTVIEVG+DV +A++++I AE+FG++QLHQLRGRVGRG S C+L Sbjct: 552 FARGEIDILVSTTVIEVGVDVPNATVMLIREAENFGVSQLHQLRGRVGRGGNASICLLHT 611 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SL 655 + SY R++ + T GF +AE DL+QR EG+ILG QSG + L D + Sbjct: 612 KAEDNSASYRRITQIAQTSSGFDLAELDLRQRHEGDILGAVQSGTHRTLRLLNLADDQDI 671 Query: 656 LEIARKDAKHILTQDPDLT 674 +E DA ++ ++P L Sbjct: 672 VERTHADAYAMVQRNPQLA 690 >gi|120403147|ref|YP_952976.1| ATP-dependent DNA helicase RecG [Mycobacterium vanbaalenii PYR-1] gi|119955965|gb|ABM12970.1| ATP-dependent DNA helicase RecG [Mycobacterium vanbaalenii PYR-1] Length = 752 Score = 328 bits (841), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 224/705 (31%), Positives = 355/705 (50%), Gaps = 99/705 (14%) Query: 19 VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRH-YRPKISEISEERIVTITGYIS 77 +GKK + L + + N DLL Y P + D R + ++ VT I Sbjct: 12 LGKKAADNLEEHLGLRTVN-----DLLRYFPRKYSDAMTVRGEGEDLEVGEHVTFVDVID 66 Query: 78 QHSSFQLQKRRPYK----ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133 + + + +P + + L D ++T FF K LKN EG K+ ++G++ + Sbjct: 67 A-AELKRVRNQPSREFLVVTLRDRRPKVTATFFNPK--YLKNTLVEGAKVMLSGEVGYYR 123 Query: 134 NRIIMVHPHYIFHNSQDVN-----------------------------FPLIEAVYSLPT 164 + + HP ++ NS FP+ A + T Sbjct: 124 GTMQLTHPAFMVLNSASGKKIGTKSLTSVASTTDATGDELLAEFEKDYFPIYGATAKVQT 183 Query: 165 GLSVDLFKKI--IVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221 D++ + ++ L +P LPEW +++ + S EA +H A+D + Sbjct: 184 ---WDIYACVRQMLAVLDPVPETLPEW----FVREHNLMSEDEALRAVHLSENAEDRDR- 235 Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-IAQKILRNIPFSPTKSQESA 280 A ERL +DE + Q L++ R G P G + ++ +PF T Q Sbjct: 236 --AIERLTFDEAVGLQWGLVVRRHSELSASGPPAKRRGDGLMAAMMAQLPFELTTGQREV 293 Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340 ++ I ++S M R+LQG+VGSGKT+V+L+AM ++AG Q ++AP +LA QH Sbjct: 294 LEVISAELSAPRPMNRMLQGEVGSGKTVVSLLAMLQMIDAGYQCALLAPTEVLAAQHALS 353 Query: 341 IKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 I+ + V ++TG+M +R A +A G+A I+IGTHAL QD+ Sbjct: 354 IRSMLGPLATAGELGGADNATRVALLTGSMTAQQKRDARREVASGEAGIVIGTHALLQDT 413 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDIS 446 +++ L +V+VDEQHRFGV+QR +L KA PH+L+MTATPIPRT+ LT GD++ S Sbjct: 414 VEFDNLGMVVVDEQHRFGVEQRDRLRAKAPEGITPHLLVMTATPIPRTVALTIYGDLETS 473 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE----GKKAYWICPQIEEKKESNFR- 501 + E P GR+PI T I + +ER ++E G++AY + +I+E + + Sbjct: 474 ILRELPRGRQPITTNTIFQTQKPAWLERAWARIAEEVKAGRQAYVVASRIDEDDKPSDED 533 Query: 502 ----------------------SVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSF 537 +VVE F L S + ++HGR+S +K +VM +F Sbjct: 534 KKDDGKAKKAKKATKEQGPPPVTVVEMFARLQRGLLSDLRLGLMHGRLSGDEKAAVMSAF 593 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 + G +L+ TTVIEVG+DV +A+++++ +A+ FG++QLHQLRGR+GRGE S C+L+ Sbjct: 594 RRGEIDVLVCTTVIEVGVDVPNATVMVVMDADRFGISQLHQLRGRIGRGEHPSLCLLVTK 653 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642 P S + RL + T DGF +A+ DL++R EG++LG QSG P Sbjct: 654 LPESSKAGQRLKAVAGTLDGFALADLDLRERSEGDVLGYYQSGRP 698 >gi|203284487|ref|YP_002222227.1| DNA recombinase [Borrelia duttonii Ly] gi|203288021|ref|YP_002223036.1| DNA recombinase [Borrelia recurrentis A1] gi|201083930|gb|ACH93521.1| DNA recombinase [Borrelia duttonii Ly] gi|201085241|gb|ACH94815.1| DNA recombinase [Borrelia recurrentis A1] Length = 687 Score = 328 bits (840), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 218/665 (32%), Positives = 338/665 (50%), Gaps = 20/665 (3%) Query: 5 FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64 FL+ L G+G + I N T +L+ Y+P + DR + Sbjct: 2 FLHEFQYGLQGINGLGSR------GIDRLNNIRITNVKELIEYYPKKYEDRKNMAAFPDP 55 Query: 65 SEERIVTITGYIS--QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122 + RI + + +H F +R KI+ E+ + + ++ L+ +F G+K Sbjct: 56 LQVRICELMTIFTVIEHRDFGNTFKRNLKIIGRSENSELFEILLFNRS-FLERIFKIGQK 114 Query: 123 ITVTGKIKKLKNRIIMVHPHY---IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 + + + ++ IF + V F I VYSL GLS + AL Sbjct: 115 FYIYARFSYNDYTKMWSCSNFDSEIF-SYNPVKFKKIMPVYSLSEGLSSKKISSYVKGAL 173 Query: 180 SRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 + + I K L+ K S S+ EA N IH P E A++ L Y E+ Q Sbjct: 174 AYFVKFGQSDIPKFLINKYSLLSLHEALNEIHFP---SSLEMLRRAKKTLVYREIFLLQ- 229 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 K ++ + N+ + ++I+ + F T+ Q+ AI +I+ D+ M R+L Sbjct: 230 -FFSRGKSYRVFLRAEKNLSNDLLKQIISKLSFELTRDQKIAITEIINDLKNNKPMNRLL 288 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 QGDVGSGKTLVA ++ +EAG Q M P +LA+QHY + ++ I V ++TG+ Sbjct: 289 QGDVGSGKTLVAFLSSIPLIEAGYQVAFMVPTDLLARQHYNSLTNILKDFDISVVLLTGS 348 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + + R + LE+I G ++IGTHA+F ++ L VI+DEQH+FGV+QR +L K Sbjct: 349 LKKKDRDEVLEKIQSGICSLVIGTHAIFSQGTKFKNLAYVIIDEQHKFGVEQREELRNKG 408 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 VLLM+ATPIPR+L LT GD+++S I P GR P+ T + ++V E LK Sbjct: 409 EEVDVLLMSATPIPRSLALTLFGDLEVSLIKRGPEGRLPVTTYLAKHGNEEKVYEFLKNE 468 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 L +G + Y++ P I ++ N + +L F S+A+IH ++ KE +M +F Sbjct: 469 LGKGHQVYFVYPLISSSEKFNLKDATSMCLNLQNIFVEYSVAMIHSKLESYVKEEIMHNF 528 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 +L+AT+VIEVGID +A+ +++E+AE FGL+ LHQ+RGRVGR S LLY Sbjct: 529 YLKKIDILVATSVIEVGIDCPNATCMVVEHAERFGLSTLHQIRGRVGRSNLKSFFFLLYK 588 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PL++ RL +K DGF IAEEDLK R G + G++QSG I+ H ++ Sbjct: 589 EPLTEAGKFRLKTIKENTDGFKIAEEDLKLRGPGNLFGLEQSGYFNLRISDFVEHKEIIG 648 Query: 658 IARKD 662 + R + Sbjct: 649 LMRAE 653 >gi|306835968|ref|ZP_07468960.1| DNA helicase RecG [Corynebacterium accolens ATCC 49726] gi|304568134|gb|EFM43707.1| DNA helicase RecG [Corynebacterium accolens ATCC 49726] Length = 708 Score = 327 bits (839), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 195/499 (39%), Positives = 296/499 (59%), Gaps = 32/499 (6%) Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR--ERLAYDELLA-GQIALLLMRKQF 247 ++ L ++ S+ +A IH P A P R +RL Y+E L+ G + L R Sbjct: 209 REPLDQQMIISLDQAVREIHEPGAA------GPQRAVQRLKYNEALSIGLVMALRQRDAH 262 Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 + G +++L ++PF T+ Q I +I D+S M+R+LQG+VGSGKT Sbjct: 263 AHTAPAMPAILGGFREELLTHLPFELTQGQRRVITEIDDDLSGSLPMMRLLQGEVGSGKT 322 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +VA AM A++AG QA ++AP +LA QH I +V ++TG+M A +R+A Sbjct: 323 MVATCAMLQAIDAGSQAALLAPTEVLASQHAASIGTSVPEGVKVV-LLTGSMRTAEKRQA 381 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL---TQKATAPHVL 424 L I G+A+I+IGTHA+ Q+S++++ L LVIVDEQHRFGV+QR L T++ +PHVL Sbjct: 382 LLDIVSGEANIVIGTHAIIQESVEFFDLGLVIVDEQHRFGVEQRDSLRSKTREGISPHVL 441 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSE 481 +MTATPIPRT+ +T GD+ +S + E P GRKPI++ ++ R + +ER++ ++ Sbjct: 442 VMTATPIPRTIAMTIFGDLAVSTLAELPGGRKPIQSAVVAEWRPIWVARALERIREEVAH 501 Query: 482 GKKAYWICPQIEEKKESNFRSVVER-----FNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 G +AY +CP+IE E + E+ F L + I+HG+M + K+ VM S Sbjct: 502 GHQAYIVCPRIE--GEGGVLELAEQLAAGPFKGLR------VDILHGKMPN--KDEVMTS 551 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F G +L++TTVIEVG+DV +A++++I AE+FG++QLHQLRGRVGRG S C++ Sbjct: 552 FARGEIDILVSTTVIEVGVDVPNATVMLIREAENFGVSQLHQLRGRVGRGGNASICLMHT 611 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SL 655 + SY R++ + T GF +AE DL+QR EG+ILG QSG + L D + Sbjct: 612 KAEENSASYRRITQIAQTSSGFDLAELDLRQRHEGDILGAVQSGTHRTLRLLNLADDQDI 671 Query: 656 LEIARKDAKHILTQDPDLT 674 +E DA ++ ++P L Sbjct: 672 VERTHADAYAMVQRNPQLA 690 >gi|302191502|ref|ZP_07267756.1| ATP-dependent DNA helicase RecG [Lactobacillus iners AB-1] Length = 673 Score = 327 bits (839), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 222/700 (31%), Positives = 366/700 (52%), Gaps = 45/700 (6%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 L L P+S GVG K + LS++ DLLFY P + P ++E+ Sbjct: 6 LKVLLNPVSDLDGVGVKTAEALSQL------KIKTIYDLLFYFPRRYDSLETFP-LNELK 58 Query: 66 EERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + + V + G I S + R +K+ ++ +I ++ F+ + LK +G Sbjct: 59 DGQKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDH---DIIMVNFFNQP-WLKKQLQKGN 114 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI------EAVYSLPTGLSVDLFKKII 175 I + GK Y+ + + ++ E VYSL + + I Sbjct: 115 DIAIYGK--------------YVLASQTLSAYKIVLREEGFEPVYSLNSHIKQKKLVSFI 160 Query: 176 VEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234 +A+ + LP LPE I + L K + +H P KD + A+ + E Sbjct: 161 SQAIEKYLPQLPEVIPQYLRDKYKLLDVKSMIIQMHQP---KDLQQVKVAQRTAIFLEFF 217 Query: 235 AGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 Q+ L L+ +K GI + ++ +I F + Q AI +IL D++ R Sbjct: 218 VFQLQLSQLLYANDQKNSGIAKKYDSSAINELKESINFQLSDDQIQAINEILADLASAKR 277 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R+LQGDVGSGKT+VA+ A+ A + AG Q +M P ILAQQH I + + Sbjct: 278 MNRLLQGDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCA 337 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++T + +++ + G +++IGTHA+ QD + + KL LVI+DEQHRFGV QR + Sbjct: 338 LLTSSTKLNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQ 397 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 L K +L M+ATPIPRTL L+ G+ +S+I + P GRK + + I + + +++ Sbjct: 398 LLNKGKMVDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLT 457 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKES 532 + L +G + Y + P I E + + ++ + + +F S +A++HG+M+ K Sbjct: 458 LMNEQLEQGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMASSQKSD 517 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +MD+F +G+ K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG S C Sbjct: 518 IMDAFIHGSIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGSTQSYC 577 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 I + P + ++ RL ++ +DGF +A EDLK R EG++ G QSG+ +F + + Sbjct: 578 IFVSDPK-TDSAKKRLKIISTCDDGFALAREDLKLRGEGDLFGQAQSGIQQFKLGDIINN 636 Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692 ++ A+K++K ++ Q+P+L G+ L L +Y++ Sbjct: 637 YNIFTTAQKESKILVHQNPELV---GEEYDFLKLLMEYDD 673 >gi|222151060|ref|YP_002560214.1| ATP-dependent DNA helicase [Macrococcus caseolyticus JCSC5402] gi|222120183|dbj|BAH17518.1| ATP-dependent DNA helicase [Macrococcus caseolyticus JCSC5402] Length = 678 Score = 327 bits (838), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 190/527 (36%), Positives = 308/527 (58%), Gaps = 18/527 (3%) Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 YSL + F+K+I A + + P ++ + L + + ++ +H P K + Sbjct: 148 YSLKGLIKRAQFRKMIDSAFQTVKIQP-FLPEHLKVRYKLWDLDQSLYELHIPSSHKHLQ 206 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP---INVEGKIAQKILRNIPFSPTKS 276 AR A+ ELL Q+ + ++ + ++ G P ++ + + + +PF T++ Sbjct: 207 ---QARRSFAFCELLLFQLKMRMLNQL--EQSGAPHSKVDYDITKVKAFIDTLPFELTEA 261 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q+ + +I +DM + RM R+LQGDVGSGKT+VA I M A + AG Q+ +M P ILA+Q Sbjct: 262 QKQVVNEIFRDMKHEFRMNRLLQGDVGSGKTIVAAICMYALMTAGRQSALMVPTEILAEQ 321 Query: 337 HYEFIKK-YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 H E + + Y ++ I ++T ++ RR LE + G II+GTHAL + +Q+ L Sbjct: 322 HAESLSEIYGESLNIA--LLTSSIKGKKRRLILEALERGDIDIIVGTHALISEPVQFNDL 379 Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 LVI DEQHRFGV QR L +K +VL MTATPIPRTL ++ G++D+S I + P GR Sbjct: 380 GLVITDEQHRFGVNQRKLLREKGNDANVLFMTATPIPRTLAISVFGELDVSTIKQMPKGR 439 Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF- 514 KPI T I+ V ++ + G++ Y ICP IE + + ++ E + + F Sbjct: 440 KPIITEWAKHEEIEIVHDKTAREIRAGRQVYVICPLIEASQHLDVKNATEIYEAYQRLFG 499 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 T + ++HG+M +K+ VM+ F+N ++++TTV+EVG++V +A++I+I +AE FGL+ Sbjct: 500 TDKVGLLHGKMKTEEKDEVMNKFQNHDFDVIVSTTVVEVGVNVPNATMIVIYDAERFGLS 559 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 LHQLRGRVGR S CIL+ +P S+ RL ++ T DGF+++E+DL+ R G+ Sbjct: 560 TLHQLRGRVGRSSYQSYCILVGNPE-SETGIERLQIMTQTTDGFVLSEKDLEMRGPGDFF 618 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL----TQDPDLTSVR 677 GIKQSG+P F +A +LE+AR +A ++ + P+L +++ Sbjct: 619 GIKQSGLPDFKVANIVEDYRMLEVARDEASELILSGAIEQPELRALK 665 >gi|329921159|ref|ZP_08277681.1| ATP-dependent DNA helicase RecG [Lactobacillus iners SPIN 1401G] gi|328934797|gb|EGG31288.1| ATP-dependent DNA helicase RecG [Lactobacillus iners SPIN 1401G] Length = 673 Score = 327 bits (838), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 223/700 (31%), Positives = 365/700 (52%), Gaps = 45/700 (6%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 L L P+S GVG K + L ++ DLLFY P + P ++E+ Sbjct: 6 LKVLLNPVSDLDGVGVKTAEALLQL------KIKTIYDLLFYFPRRYDSLETFP-LNELK 58 Query: 66 EERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + + V + G I S + R +K+ ++ +I ++ F+ + LK +G Sbjct: 59 DGQKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDH---DIIMVNFFNQP-WLKKQLQKGN 114 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI------EAVYSLPTGLSVDLFKKII 175 I + GK Y+ + + ++ E VYSL + + I Sbjct: 115 DIAIYGK--------------YVLASQTLSAYKIVLKEEGFEPVYSLNSHIKQKKLVSFI 160 Query: 176 VEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234 +A+ + LP LPE I + L K + +H P KD + A+ + E Sbjct: 161 NQAIEKYLPQLPEVIPQYLRDKYKLLDVQSMIIQMHQP---KDLQQVKVAQRTAIFLEFF 217 Query: 235 AGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 Q+ L L+ +K GI + ++ +I F + Q AI +IL D++ R Sbjct: 218 VFQLQLSQLLYANDQKNNGIAKKYDSSAINELKESINFQLSDDQIQAICEILADLASAKR 277 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R+LQGDVGSGKT+VA+ A+ A + AG Q +M P ILAQQH I + + Sbjct: 278 MNRLLQGDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCA 337 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++T + +++ + G +++IGTHA+ QD + + KL LVI+DEQHRFGV QR + Sbjct: 338 LLTSSTKLNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQ 397 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 L K +L M+ATPIPRTL L+ G+ +S+I + P GRK + + I + + +++ Sbjct: 398 LLNKGKMVDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLT 457 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKES 532 + L +G + Y + P I E + + ++ + + +F S +A++HG+M K Sbjct: 458 LMNEQLEQGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMGSSQKSD 517 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +MD+F +G+ K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG S C Sbjct: 518 IMDAFIHGSIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGSTQSYC 577 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 I + P + ++ RL ++ +DGF +A EDLK R EG+I G QSG+P+F + + Sbjct: 578 IFVSDPK-TDSAKKRLKIISTCDDGFALAREDLKLRGEGDIFGQAQSGIPQFKLGDIINN 636 Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692 ++ A+K++K ++ Q+P+L G+ L L +Y++ Sbjct: 637 YNIFTTAQKESKILVYQNPELV---GEEYDFLKLLMEYDD 673 >gi|302335847|ref|YP_003801054.1| ATP-dependent DNA helicase RecG [Olsenella uli DSM 7084] gi|301319687|gb|ADK68174.1| ATP-dependent DNA helicase RecG [Olsenella uli DSM 7084] Length = 720 Score = 327 bits (837), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 213/662 (32%), Positives = 343/662 (51%), Gaps = 40/662 (6%) Query: 44 LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP----YKILLNDGTG 99 LL + P ++D +++I+ + ++ QL++ RP +I D TG Sbjct: 49 LLHHMPHRYLDFSC---VTDIAHADVGDEATVVAVADRVQLKRPRPRMQVVEIFALDATG 105 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKI------KKLKNRIIMVHPHYIFHNSQDVNF 153 + + FF + + EG +I ++GK+ K+++ ++ V + +F Sbjct: 106 VMQVSFF--RQPWIAEQVKEGDRIALSGKVTFGYGFKQMRAPLLEV----LGPEDDSADF 159 Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213 I V+ + G++V ++I+ AL+ + +++ LL A A IH PR Sbjct: 160 ARILPVHPVAEGITVPWMRRIVSAALADAGDVCDFMPSQLLTGHRLMGEARALRAIHFPR 219 Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFS 272 + + AR RLAYDELL Q+AL+ ++ + I +V G + +L +PF+ Sbjct: 220 TLAERDG---ARRRLAYDELLCLQLALVARQRIELRGIEPTCHVTSGPRMRSLLEQLPFA 276 Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332 T Q A DIL DM+ M R+L GDVG+GKT+VA +A+AA ++ QA +MAP + Sbjct: 277 LTDEQRQAADDILADMAAPRVMGRLLLGDVGTGKTVVAALALAAVADSATQAAMMAPTSV 336 Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392 LA+Q+ E + I ++TG R +A G ++ GT A+ D + + Sbjct: 337 LARQYAERLGPLLDAAGISWGLVTGATAPEERAALAHGVADGTVTVVFGTTAVLSDDMDF 396 Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452 +L LV++DEQHRFGV QR +L +K A +L MTATPIPRTL L+ GD+ S+I +P Sbjct: 397 SRLTLVVIDEQHRFGVGQRTRLRRKGAAADLLAMTATPIPRTLALSVYGDMSCSRIRHRP 456 Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV---ERFNS 509 I+T I +D ++ ++ G +AY +CP ++E + + V ER + Sbjct: 457 CPGASIETHCIAPESLDLAFGAIREAVAVGHQAYVVCPLVDEHDDGSGLDDVPERERSGA 516 Query: 510 LHEHFTSSIA--------------IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555 H + +A ++ GRM +K+ M+ F+ G +L++TTVIEVG+ Sbjct: 517 TGAHAATQVASDLSRTALSGLSLDLLTGRMGSQEKDEAMERFRAGRTDVLVSTTVIEVGV 576 Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615 DV +A+++++ +A+ FGLA LHQLRGRVGRG+ L + RL+ L+ T Sbjct: 577 DVPNATVMLVFDADRFGLATLHQLRGRVGRGDSPGVVYLSCAARKGTPARRRLAALEATS 636 Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 DG +AE DL+ R EGE+LG +QSG P + L+E A +DA+ I +DP L+S Sbjct: 637 DGLELAELDLRLRHEGEVLGYRQSGGPTLKASDLVADADLVEWAHEDARRIAEEDPTLSS 696 Query: 676 VR 677 R Sbjct: 697 DR 698 >gi|284992417|ref|YP_003410971.1| DEAD/DEAH box helicase domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284065662|gb|ADB76600.1| DEAD/DEAH box helicase domain protein [Geodermatophilus obscurus DSM 43160] Length = 726 Score = 327 bits (837), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 216/690 (31%), Positives = 360/690 (52%), Gaps = 59/690 (8%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99 DLL ++P + R ++ ++ VT+ + + ++ ++ + RP ++ + DG G Sbjct: 32 DLLRHYPRRYAKRGEMTRLDDLQVGDRVTVLAQVRKVATRKM-RNRPGTLTEVTVGDGAG 90 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH-YIFHNSQDVNFP-LIE 157 + L+FF R+ L+ EG G + + + HP ++ D ++ + Sbjct: 91 SMQLVFFNRRHANLR----EGAWGLFAGTVGEYRRSKQFAHPDCHLITGDDDTDWARALI 146 Query: 158 AVYSLPTGLSVDLFKK---IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 +Y +S + +K ++++A + + + +L + PS+A A IH P Sbjct: 147 PIYPASKDVSSWVIQKSVRLLLDASGGFGFVEDPLPAELRARHGLPSLAAALLDIHRPTS 206 Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSP 273 +D E A RL +DE L Q+ L R+ E GI G + + +PF+ Sbjct: 207 DEDVER---AGYRLKWDEALTLQLTLAARRRAAALEPGIARPRRPGGLLDAVDAALPFAL 263 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T Q + +++ +++++ M R+LQG+VG+GKT+VAL AMA V+AGGQA ++AP +L Sbjct: 264 TDGQCAVGEELAAELAREQPMHRLLQGEVGAGKTVVALRAMAQVVDAGGQAALLAPTEVL 323 Query: 334 AQQHYEFIKKY-------------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380 A QH I T+++ ++TG+ A RR+ +A G A I++ Sbjct: 324 AAQHARSIGAMLGPLGRAGELDGDPAGTRVV--LLTGSQKAAARRQGRAAVADGSAGIVV 381 Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTS 439 GTHAL Q+ + + L LV+VDEQHRFGV+QR L K PHVL+MTATPIPRT+ +T Sbjct: 382 GTHALLQEGVDFADLGLVVVDEQHRFGVEQRDALRAKGNRPPHVLVMTATPIPRTVAMTV 441 Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEK 495 GD++ S + + P GR + + ++P+ +D ERL+ ++ G++AY +CP+I E Sbjct: 442 YGDLETSTLRQLPGGRGGVASSVVPVRDKPAWLDRAWERLREEVAAGRQAYVVCPRIGED 501 Query: 496 KE----------------SNFRSVVERFNSLHEHFTSSIA-----IIHGRMSDIDKESVM 534 S+ R + + E +A ++HGRM+ DKE+ M Sbjct: 502 AATEEEPDDADGAPAGEVSDRRPPLAVLDVAEELRAGPLAGLRLEVLHGRMTPEDKEARM 561 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 +F G +L+ATTV+EVG+DV +A+++++ +A+ FG++QLHQLRGRV RG C+L Sbjct: 562 RAFAAGDVDVLVATTVVEVGVDVPNATVMVVLDADRFGVSQLHQLRGRVARGRHQGLCLL 621 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 + S + RL+ + T DGF +A DL+ R+EG++LG QSG + L D Sbjct: 622 VSEASASSATGQRLAAVAGTSDGFELARLDLETRREGDVLGAAQSGRRSGIRMLSLLEDE 681 Query: 655 -LLEIARKDAKHILTQDPDLTSVRGQSIRI 683 L+ AR +A +L D L G ++ + Sbjct: 682 QLIAEARTEATALLATDRGLADFPGLAMEV 711 >gi|325913467|ref|ZP_08175833.1| ATP-dependent DNA helicase RecG [Lactobacillus iners UPII 60-B] gi|325477236|gb|EGC80382.1| ATP-dependent DNA helicase RecG [Lactobacillus iners UPII 60-B] Length = 673 Score = 327 bits (837), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 223/700 (31%), Positives = 365/700 (52%), Gaps = 45/700 (6%) Query: 6 LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65 L L P+S GVG K + L ++ DLLFY P + P ++E+ Sbjct: 6 LKVLLNPVSDLDGVGVKTAEALLQL------KIKTIYDLLFYFPRRYDSLETFP-LNELK 58 Query: 66 EERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 + + V + G I S + R +K+ ++ +I ++ F+ + LK +G Sbjct: 59 DGQKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDH---DIIMVNFFNQP-WLKKQLQKGN 114 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI------EAVYSLPTGLSVDLFKKII 175 I + GK Y+ + + ++ E VYSL + + I Sbjct: 115 DIAIYGK--------------YVLASQTLSAYKIVLKEEGFEPVYSLNSHIKQKKLVSFI 160 Query: 176 VEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234 +A+ + LP LPE I + L K + +H P KD + A+ + E Sbjct: 161 NQAIEKYLPQLPEVIPQYLRDKYKLLDVQSMIIQMHQP---KDLQQVKVAQRTAIFLEFF 217 Query: 235 AGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 Q+ L L+ +K GI + ++ +I F + Q AI +IL D++ R Sbjct: 218 VFQLQLSQLLYANDQKNNGIAKKYDSSAINELKESINFQLSDDQIQAICEILADLASAKR 277 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R+LQGDVGSGKT+VA+ A+ A + AG Q +M P ILAQQH I + + Sbjct: 278 MNRLLQGDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCA 337 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++T + +++ + G +++IGTHA+ QD + + KL LVI+DEQHRFGV QR + Sbjct: 338 LLTSSTKLNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQ 397 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 L K +L M+ATPIPRTL L+ G+ +S+I + P GRK + + I + + +++ Sbjct: 398 LLNKGKMVDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLT 457 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKES 532 + L +G + Y + P I E + + ++ + + +F S +A++HG+M K Sbjct: 458 LMNEQLEQGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMGSSQKSD 517 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +MD+F +G+ K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG S C Sbjct: 518 IMDAFIHGSIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGTTQSYC 577 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 I + P + ++ RL ++ +DGF +A EDLK R EG+I G QSG+P+F + + Sbjct: 578 IFVSDPK-TDSAKKRLKIISTCDDGFALAREDLKLRGEGDIFGQAQSGIPQFKLGDIINN 636 Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692 ++ A+K++K ++ Q+P+L G+ L L +Y++ Sbjct: 637 YNIFTTAQKESKILVHQNPELV---GEEYDFLKLLMEYDD 673 >gi|187918444|ref|YP_001884007.1| ATP-dependent DNA helicase RecG [Borrelia hermsii DAH] gi|119861292|gb|AAX17087.1| ATP-dependent DNA helicase RecG [Borrelia hermsii DAH] Length = 687 Score = 327 bits (837), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 223/670 (33%), Positives = 338/670 (50%), Gaps = 60/670 (8%) Query: 5 FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRH---YRPKI 61 FL+ L G+GKK + + + T +L+ Y P + DR P Sbjct: 2 FLHEFKYDLQGISGLGKK------GLERLNSLHITNIRELIEYFPKKYEDRKNIKTFPDS 55 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI-TLLFFYRKTEMLKNVFFEG 120 E+ ++T+ + +H F +R K++ EI +L F R L+ VF G Sbjct: 56 LEVRNCELMTVFT-VLEHRDFGNNFKRNLKLIAQSENNEIFEILLFNRG--FLEGVFKVG 112 Query: 121 RKITVTGKIK-----------KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVD 169 +K + K + + +P F I VYSL GL+ Sbjct: 113 QKFYIYSKFNYNDYTQMWSCSNFDSEVFSCNPE---------RFKKIIPVYSLSEGLTSK 163 Query: 170 LFKKIIVEALSRL-----PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPA 224 + EAL +PE+ L+ K S EA N IH P FE A Sbjct: 164 KISSYVKEALVYFLKFGQSDVPEF----LINKYSLLPFHEALNEIHFP---SSFEMLEKA 216 Query: 225 RERLAYDELLA------GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 ++ L Y E+ G+ ++ +RK E +P N + +I+ +PF TK Q Sbjct: 217 KKTLIYREIFLLQFFSRGKSSVFFLRK----ERNLPRN----LLDQIILKLPFKLTKDQR 268 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 AI +I+ D+ M R+LQGDVGSGKT+VA ++ +EAG Q +M P +LA+QHY Sbjct: 269 VAIDEIINDLESNKPMNRLLQGDVGSGKTIVAFLSSIPLIEAGYQVALMVPTDLLARQHY 328 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + ++ + + +TG++ + R + LE+I G ++IGTHA+F ++ +L + Sbjct: 329 NNLANILKDFNVSIAFLTGSLKKRDRDEVLEKIQSGTYSLVIGTHAIFSQGTKFKRLAYI 388 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DEQH+FGV+QR +L K VLL++ATPIPR+L LT GD++IS I PAGR P+ Sbjct: 389 IIDEQHKFGVEQREELKNKGEEVDVLLISATPIPRSLALTLFGDLEISLIRRGPAGRIPV 448 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517 T + ++V E LK L++G + Y++ P I + N + +L F S Sbjct: 449 TTYLAKHGNEEKVYEFLKNELAKGHQVYFVYPLISSSQRFNLKDATSMCLNLKNIFVEYS 508 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 + +IH ++ KE +M F +L+AT+VIEVGID +A+ +++E+AE FGL+ LH Sbjct: 509 VEMIHSKLESHVKEEIMHDFYLKRIDILVATSVIEVGIDCPNATCMVVEHAERFGLSTLH 568 Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637 Q+RGRVGRG S LLY PL+++ RL +K DGF IAEEDLK R G + G++ Sbjct: 569 QIRGRVGRGSLKSFLFLLYKEPLTESGKFRLKTIKENIDGFKIAEEDLKLRGPGNLFGLE 628 Query: 638 QSGMPKFLIA 647 Q+G K IA Sbjct: 629 QTGYLKLKIA 638 >gi|152965336|ref|YP_001361120.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans SRS30216] gi|151359853|gb|ABS02856.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans SRS30216] Length = 759 Score = 326 bits (835), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 245/765 (32%), Positives = 378/765 (49%), Gaps = 86/765 (11%) Query: 6 LNPLFAPLSTF--RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE 63 ++ L APLS+ RG G +K ++ G ET DLL++ P + DR I + Sbjct: 1 MDELDAPLSSRLPRGKGNSKKANPAKFLSEGLGLET-VRDLLWHLPRRYADRGTLTPIRD 59 Query: 64 ISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTGEITLLFFYRKTEML---KNVF 117 + E TI + ++ Q + + + L DG +T+ FF + K Sbjct: 60 LVEGENATILAQVVKYGEPQRMRAKDGVRLVVTLGDGRDTLTMTFFAKFAGQFAHQKADL 119 Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQD----VN--FPLIEAVYSLPTGLSVDL 170 G + +GK+ K ++ + HP Y + +D VN PL A + P L Sbjct: 120 VPGALVLASGKVSKFQDVWQLSHPDYETLEDPEDGVDAVNRPIPLYPASKAAPNWL---- 175 Query: 171 FKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA 229 ++ + + L L LPE++ +++ A +H PR + E R RL Sbjct: 176 VRQSVAQLLDGLEGQLPEFLPAEVVAGADLLDPLAALRAVHAPRDEAELEA---GRHRLR 232 Query: 230 YDELLAGQIALLLMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDM 288 Y+E Q AL L R ++ + IA + +PF T SQ + ++I D+ Sbjct: 233 YEEAFVLQTALALRRASTARQRAVARTASPDGIAAAFDQRLPFPLTGSQRAVGEEIAADL 292 Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK------ 342 ++ + M R+LQGDVGSGKTLVAL AM V+ GGQA ++AP +LA QH I Sbjct: 293 ARPHPMQRLLQGDVGSGKTLVALRAMLTVVDGGGQAALLAPTEVLAAQHLRSITAMLGDL 352 Query: 343 -------KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 + + T+++ ++TG+M RR AL A G+A I+IGTHAL Q+ +Q+ L Sbjct: 353 AGAGTFGAHERATKVV--LLTGSMGAPARRAALLAAASGEAGIVIGTHALLQEHVQFADL 410 Query: 396 ILVIVDEQHRFGVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454 V+VDEQHRFGV+QR L K PH+L+MTATPIPRT+ +T GD++ S +TE P G Sbjct: 411 GFVVVDEQHRFGVEQRDALRAKGNGIPHLLVMTATPIPRTVAMTLFGDLETSVLTELPPG 470 Query: 455 RKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQIEEKKESN------------ 499 R ++TV++P +R ID +R+ + G+++Y +C +I+ E Sbjct: 471 RADVQTVVVPQDRPAWIDRTWQRIAEEAALGRQSYVVCARIDTDDEGGEDGTPPEDGPGE 530 Query: 500 -----------------------------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530 VVE + ++HGR+ +K Sbjct: 531 EPAPDDALFEEPRPRGGKPGRPKPRPAAAVSQVVEVVRTHPATAGLRTEVLHGRLPPAEK 590 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 + VM F G +++ATTV+EVG+DV +AS++++ +A+ FG++QLHQLRGR+GRG Sbjct: 591 DDVMSRFAAGEVDVVVATTVVEVGVDVPNASVMVVVDADRFGISQLHQLRGRIGRGGLPG 650 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 +C+LL + RL+ L T DGF +A DL+QR+EG++LG QSG L Sbjct: 651 TCLLLSGASEGSPAGQRLAALARTRDGFELARLDLEQRREGDVLGAAQSGERSSLQLLGV 710 Query: 651 LHDS-LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694 L D+ L+ AR A ++ DPDL++ R + + + EAF Sbjct: 711 LRDAELVAHARAAAVTLVAADPDLSAHRPLAAAVAARVSGDTEAF 755 >gi|260578990|ref|ZP_05846892.1| ATP-dependent DNA helicase [Corynebacterium jeikeium ATCC 43734] gi|258602855|gb|EEW16130.1| ATP-dependent DNA helicase [Corynebacterium jeikeium ATCC 43734] Length = 721 Score = 325 bits (834), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 189/466 (40%), Positives = 277/466 (59%), Gaps = 16/466 (3%) Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 R P P W + + + S A+A IH P +A PAR RL ++E L Q+ + Sbjct: 212 RNPGAPAWPTDE--KGRPLISFADALRHIHQPSEAG----PEPARRRLKFNEALELQLVM 265 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L R K G+ + G+ +K++ +PF + Q+ A++DI + +L G Sbjct: 266 ALRRNDATKRTGMAL-APGENVEKLIAGLPFDLSAGQKMALEDIGSRLGGTTPANLLLHG 324 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 +VGSGKT+VALI+M AV++G Q +AP ILA QH + K +NT + V ++ G+ Sbjct: 325 EVGSGKTMVALISMLWAVDSGYQCAFVAPTEILAVQHARSLVKMLENTDVRVSVLVGSQK 384 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-- 418 QA +++ L + GQ I++GTHA+ QDS+++Y+L +V+VDEQHRFGVQQR KL + A Sbjct: 385 QADKQRTLLDLVSGQTDIVVGTHAVIQDSVEFYRLGMVVVDEQHRFGVQQRNKLRESAPV 444 Query: 419 -TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIER 474 PH+++MTATPIPRT+ +T GD+ + KP GR I+TV++P ++ + ER Sbjct: 445 DATPHMMVMTATPIPRTVGMTMFGDLTPITLVGKPGGRGDIETVVVPADKYRWVRRAWER 504 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534 + + G +AY + P+IE S ER + E +A++HG+M DK+ VM Sbjct: 505 MGEEIKAGGQAYVVAPRIE--GHSGVEQWCERI-ATEELPGCRVAMLHGKMDPADKDQVM 561 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F G +L+ATTVIEVG+DV +AS+++I AE+FG +QLHQLRGR+GRG S C+L Sbjct: 562 QDFAAGKIDVLVATTVIEVGVDVPNASMMMILEAENFGFSQLHQLRGRIGRGRRDSLCLL 621 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 S+ RL V+ + DGF +AEEDLK R EG+ILG QSG Sbjct: 622 HTTAAPDSPSFHRLQVVAQSNDGFRLAEEDLKMRTEGDILGQDQSG 667 >gi|296140527|ref|YP_003647770.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162] gi|296028661|gb|ADG79431.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola DSM 20162] Length = 778 Score = 325 bits (834), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 217/649 (33%), Positives = 333/649 (51%), Gaps = 104/649 (16%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN--------------------------- 152 GR++ + G++ + ++ + HP ++ D++ Sbjct: 114 GRQLLLIGRLGEFNRKLQLTHPDWLVLPDDDMSSTEALAANETGATKAGSKRLKLANLAL 173 Query: 153 -----FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFN 207 P+ ++PT L I+ L+RL +PE + EA Sbjct: 174 LTGPVVPIYHGTKNMPTWL----IASIVDLVLTRLAPVPESLPDGFRSLHGLLGFDEALR 229 Query: 208 IIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP--INVEGKIAQKI 265 + H P++ + + AR RL++DE +A + AL R + P V+G + + Sbjct: 230 VAHFPKRRSEAD---AARRRLSFDEAVAIETALA-RRAHDVGTVPAPQLAAVDGPLQAGL 285 Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 +PF T QE + +IL D+SQ + M R+LQG+VGSGKTLVAL+AM AAV++G QAV Sbjct: 286 RERLPFQLTAGQEEVLAEILGDLSQGHPMTRLLQGEVGSGKTLVALLAMLAAVDSGYQAV 345 Query: 326 IMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIAHG 374 ++AP +LA QH I K + V ++TG+M RR AL RI G Sbjct: 346 LLAPTEVLATQHMLSITKMLGDLGEAGQLGAADAATTVTLLTGSMNTKARRAALLRIVSG 405 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA---TAPHVLLMTATPI 431 +A I+IGTHAL +D++ +++L LV+VDEQHRFGV+QR +L +K PH+L+MTATPI Sbjct: 406 EAGIVIGTHALLEDTVDFFRLGLVVVDEQHRFGVEQRDRLRRKGPDDMTPHLLVMTATPI 465 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWI 488 PRT+ L GD+ S + E P GR+PI+T ++P R ID R+ + G++ Y + Sbjct: 466 PRTVALAQFGDMSTSVLRELPRGRQPIQTSVVPEGRPGWIDRAWARVDEEVRAGRQVYVV 525 Query: 489 CPQI-----------------------------------------EEKKESNFRSVVERF 507 CP+I E ++ S ++ + Sbjct: 526 CPRIGDDPSGEQAKTSFTDEDYQFEQVAAPVRREKDRGDAGGEDAAESEQPKMTSAIDMY 585 Query: 508 NSL--HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E IA++HGR+ +K SVM F G +L+ATTVIEVG+DV +A+ +++ Sbjct: 586 DQLVGSELGQHRIALLHGRLPAEEKASVMAEFAAGEIDVLVATTVIEVGVDVANATTMVV 645 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625 +AE FG++QLHQLRGRVGRG C+L+ P S + RL + T DGF +A+ DL Sbjct: 646 MDAERFGISQLHQLRGRVGRGGLPGLCLLVTDTP-SARTMERLESVAGTVDGFALAQLDL 704 Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDL 673 + R G+ILG+ QSG+ + L +D +L+ AR A ++ +DP+L Sbjct: 705 EHRGFGDILGVDQSGLARRLSFLDLANDGDVLDAARAFAFEVIDEDPEL 753 >gi|68536289|ref|YP_250994.1| ATP-dependent DNA helicase [Corynebacterium jeikeium K411] gi|68263888|emb|CAI37376.1| ATP-dependent DNA helicase [Corynebacterium jeikeium K411] Length = 721 Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 189/466 (40%), Positives = 277/466 (59%), Gaps = 16/466 (3%) Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 R P P W + + + S A+A IH P +A PAR RL ++E L Q+ + Sbjct: 212 RNPGAPAWPTDE--KGRPLISFADALRHIHQPSEAG----PEPARRRLKFNEALELQLVM 265 Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L R K G+ + G+ +K++ +PF + Q+ A++DI + +L G Sbjct: 266 ALRRNDATKRTGMAL-APGENVEKLIAGLPFDLSAGQKMALEDIGSRLGGTTPANLLLHG 324 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 +VGSGKT+VALI+M AV++G Q +AP ILA QH + K +NT + V ++ G+ Sbjct: 325 EVGSGKTMVALISMLWAVDSGYQCAFVAPTEILAVQHARSLVKMLENTNVRVSVLVGSQK 384 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-- 418 QA +++ L + GQ I++GTHA+ QDS+++Y+L +V+VDEQHRFGVQQR KL + A Sbjct: 385 QADKQRTLLDLVSGQTDIVVGTHAVIQDSVEFYRLGMVVVDEQHRFGVQQRNKLRESAPV 444 Query: 419 -TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIER 474 PH+++MTATPIPRT+ +T GD+ + KP GR I+TV++P ++ + ER Sbjct: 445 DATPHMMVMTATPIPRTVGMTMFGDLTPITLVGKPGGRGAIETVVVPADKHRWVRRAWER 504 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534 + + G +AY + P+IE S ER + E +A++HG+M DK+ VM Sbjct: 505 MGEEIKAGGQAYVVAPRIE--GHSGVEQWCERI-ATEELPGCRVAMLHGKMDPADKDQVM 561 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F G +L+ATTVIEVG+DV +AS+++I AE+FG +QLHQLRGR+GRG S C+L Sbjct: 562 QDFAAGKIDVLVATTVIEVGVDVPNASMMMILEAENFGFSQLHQLRGRIGRGRRDSLCLL 621 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 S+ RL V+ + DGF +AEEDLK R EG+ILG QSG Sbjct: 622 HTTAAPDSPSFHRLQVVAQSNDGFRLAEEDLKMRTEGDILGQDQSG 667 >gi|315604396|ref|ZP_07879462.1| DNA helicase RecG [Actinomyces sp. oral taxon 180 str. F0310] gi|315314102|gb|EFU62153.1| DNA helicase RecG [Actinomyces sp. oral taxon 180 str. F0310] Length = 715 Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 220/680 (32%), Positives = 337/680 (49%), Gaps = 50/680 (7%) Query: 33 CGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI-SQH-------SSFQL 84 C +A +LL P + +S + E VTI + S H S +L Sbjct: 23 CESAGVHTVGELLSVPPRRYDHWGRLTPMSSLREGEDVTILAEVASAHLVANRSGSGVRL 82 Query: 85 QKRRPYKILLNDGTGEITLLFFYR---KTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHP 141 + R L DGT ++ FF R K ++ + GR GK+ + ++ + HP Sbjct: 83 EAR------LTDGTQFLSATFFARNHYKLAPIERLLTPGRSFLFAGKVGAYRGKLQLTHP 136 Query: 142 HYIFHNSQDV----NFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPEWIEKDLLQ 195 + + DV + P+ +YS L+ + I L + +P+ + + Sbjct: 137 SFEGVDGDDVERVASRPI--PIYSAMGSLASWAIARAIAMVLDHVEDSDVPDAVPSAVRA 194 Query: 196 KKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI 255 + + A+A +H P D+ AR LA+ E Q+ L+ R + Sbjct: 195 RNGVLAHADALRRLHQPETDDDYRQ---ARRSLAFAEAFVLQVGLVAARAGVRAVPAPAS 251 Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315 + + + +PF T SQ A+ I D++ M R+LQGDVGSGKT+VALIA+ Sbjct: 252 PASPALVESLTALLPFELTDSQREAVARIGVDLASTVPMQRLLQGDVGSGKTVVALIALL 311 Query: 316 AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ---NTQIIVEIITGNMPQAHRRKALERIA 372 V AG Q V +AP +LA+QH ++ V ++TG+ P A RR+ + +A Sbjct: 312 QVVAAGHQGVFVAPTEVLAEQHAASLRSLLAPLGERAPDVRLLTGSTPPAARREIVAALA 371 Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT---QKATAPHVLLMTAT 429 I++GTHALFQD ++ L LV+VDEQHRFGV+QR L+ + A H L+MTAT Sbjct: 372 SAHPLIVVGTHALFQDGVRVPGLGLVVVDEQHRFGVEQRAALSGAREDGRAVHELVMTAT 431 Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAY 486 PIPRT+ +T G +D +++ KP R P+ T + + +R +++G++ Y Sbjct: 432 PIPRTIAMTVFGGLDDTRMVGKPKDRSPVATYLADATNGAWVRRAWQRAAEEIAQGRRVY 491 Query: 487 WICPQI---------EEKKESNFRSVVERFNSLHEHFTSSIAIIH---GRMSDIDKESVM 534 +CP+I E++ SV E L + IH GR K +M Sbjct: 492 VVCPRIDPSDEVADAEDEDAPPLASVAEVARYLRSQPALAGVAIHELTGRTPAGVKAQIM 551 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 + F G LL+ATTV+EVG+DV +A++++I +++ FGLAQLHQLRGRVGR S CI Sbjct: 552 EDFSCGRAPLLVATTVVEVGVDVPEATLMVILDSQQFGLAQLHQLRGRVGRSSVPSLCIA 611 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD- 653 ++ L++ RL T DGF +AE DL+ RKEG+++G QSG L L D Sbjct: 612 MHRHELTEAGRARLEAFAQTNDGFELAEADLRLRKEGDVVGAGQSGTATHLRYLSVLRDE 671 Query: 654 SLLEIARKDAKHILTQDPDL 673 +L+ ARK+A+ +L +DP L Sbjct: 672 ALIRAARKEAEALLNEDPTL 691 >gi|312194934|ref|YP_004014995.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c] gi|311226270|gb|ADP79125.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c] Length = 785 Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 230/727 (31%), Positives = 360/727 (49%), Gaps = 103/727 (14%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL-LNDGTGEI 101 DLL + P + R + ++ E + T+ + +H S Q + R + +L + DGT ++ Sbjct: 69 DLLDHLPRRYHQRGELTNLRDLVEGEVSTVHAKVVKHESRQARTGRRFDVLTVTDGTAQM 128 Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY------------------ 143 T+ +F + G +GK+ + + ++ MV+P Sbjct: 129 TVTYFNPSRSPARR-LPAGSVAAFSGKVDRFRKQLQMVNPETNRLDEDDESDDPDRWARA 187 Query: 144 ---IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP 200 I+ S+ V P+I SV + + E LP+ + DLL + Sbjct: 188 LVPIYPASEHVASPVIS--------RSVRVLLDTVAE-------LPDPLPADLLARYRLV 232 Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK--EIGIPINVE 258 + A+ + H P D E A RL +DE L Q+ L R+ + P + Sbjct: 233 DLRTAYELAHRPESRGDVER---AHRRLKWDEALTLQVILAQRRRAISAMATVARPARPD 289 Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318 G +A +PF+ T+ Q I +++++ M R+LQG+VGSGKT+VA+ AM A V Sbjct: 290 GILA-AFDGQLPFALTEGQREVGATIQEELAEPVPMHRLLQGEVGSGKTVVAVRAMLAVV 348 Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQN-----------TQIIVEIITGNMPQAHRRKA 367 +AGGQA ++AP LA QHY I+ + ++TG++ +R A Sbjct: 349 DAGGQAALLAPTETLATQHYRGIRALLGGFGRAGELDETPPATRIALVTGSVGARAKRAA 408 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLM 426 L A G A ++IGTHAL + + ++ L LV+VDEQHRFGV+QR L +A PHVL+M Sbjct: 409 LAAAADGSAGLVIGTHALLHEGVAFHDLGLVVVDEQHRFGVEQRDALRARAAQPPHVLVM 468 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII-----PINRIDEVIERLKVVLSE 481 TATPIPRT+ +T GD+++S +T+ PAGR+PI T ++ P R D + R++ ++ Sbjct: 469 TATPIPRTVAMTVFGDLEVSTLTQLPAGRQPISTFVVDAAAHPAWR-DRIWGRIRDEVAA 527 Query: 482 GKKAYWICPQI-----------------EEKKESNFRS--VVERFNSLHEHFTS------ 516 G +AY +CP+I +E ++ R+ ER ++ S Sbjct: 528 GHQAYVVCPRISSVAVGRDEEDLAAAGDDEASDAPRRAGKATERPVTIPAEDGSLAGAGV 587 Query: 517 ---------------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 +A +HGR+ K+SVM F G +L+ATTVIEVG+DV +A+ Sbjct: 588 EELLPWLADGPLAGLRLAALHGRLPADAKDSVMTRFAAGELDVLVATTVIEVGVDVPNAT 647 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621 +I I +A+ FG++QLHQLRGRVGRG+ C+L + RL+ + T DG +A Sbjct: 648 VIAIMDADRFGVSQLHQLRGRVGRGQGAGVCLLHTEVDGDTPATQRLANVAATTDGAELA 707 Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI-ARKDAKHILTQDPDLTSVRGQS 680 DL QRKEG++LG QSG + + L D L + AR++A ++ DP+L + G Sbjct: 708 RLDLGQRKEGDVLGASQSGRARGVRLLELLKDERLILDAREEAARLVAADPELVAHPGLG 767 Query: 681 IRILLYL 687 RI + L Sbjct: 768 RRIAIAL 774 >gi|325107645|ref|YP_004268713.1| DEAD/DEAH box helicase [Planctomyces brasiliensis DSM 5305] gi|324967913|gb|ADY58691.1| DEAD/DEAH box helicase domain protein [Planctomyces brasiliensis DSM 5305] Length = 701 Score = 325 bits (832), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 215/648 (33%), Positives = 347/648 (53%), Gaps = 44/648 (6%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 PL RGVG + LS N DLL+Y P +D K+SE+++++I T Sbjct: 21 PLRYVRGVGPARAALLS------NLGLETVSDLLWYLPKDVLDLSELSKVSELTDDKIHT 74 Query: 72 ITGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 + G + + L+ R ++ G I ++F + +++ + K K Sbjct: 75 VRGQVLDVETKMLLRGRNLTAAVMRAEDGLIRGVWFNQP--WMRSKLNTEAYVLWAAKPK 132 Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAV--YSLPTGLSVDLFKKIIVEALSRLP----- 183 R M +P + ++ D + + E + Y L GL ++ +++I L +P Sbjct: 133 FRDGRWEMSNPRLQWLDA-DADDAVGEVLPKYGLTEGLKLEGLRRMIAGVLELIPGHVED 191 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL- 242 VLPE P + E+ +H P + ++ AR R+ ++E L Q+ L L Sbjct: 192 VLPERFRV----HYKLPGLEESLKQLHRPDTLEQYQ---QARRRIVFEEQLTFQLGLALR 244 Query: 243 --MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 +R+ ++ IPI K+ +I R PF T QE AI +I D++ M R+LQ Sbjct: 245 RRVRQTTERAPAIPITP--KVDARIRRLFPFELTNGQEQAIAEITADLALTQPMHRLLQA 302 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVG+GKT+VA AM AAV AG QA++MAP +LA+QH + + +++++ ++TG + Sbjct: 303 DVGAGKTVVAAYAMLAAVAAGYQAILMAPTELLARQHKQTLDAALKHSRVKRGLLTGTLT 362 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 A RR L+ IA G+ +++GT AL Q + +++L L ++DEQH+FGV QR T A Sbjct: 363 AAERRGMLDDIASGKMQLVVGTQALIQKDVNFHQLGLAVIDEQHKFGVAQRSSFTGSTIA 422 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI-DEVIERLKVVL 479 PHVL+MTATPIPR+L LT GD+D+S + + P GR+ + T + + ++ ++ L Sbjct: 423 PHVLVMTATPIPRSLCLTQYGDLDLSVMKDLPPGRQSVVTSRVTTPAVANKAWSFVQEKL 482 Query: 480 SEGKKAYWICPQIEEKK-------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532 + G++AY +CP ++ + E +R + +RF L + ++HG+M ++ Sbjct: 483 TGGRQAYVVCPYVDSTEADAPAGAEQTYREMQQRFPDL------KVGLVHGQMDRRQQQL 536 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 VM F+ G ++L+AT+VIEVG+DV +AS+++I +A FGL+QLHQLRGR+GRG C Sbjct: 537 VMADFREGEIQMLVATSVIEVGVDVPNASLMVILDAHQFGLSQLHQLRGRIGRGSFQGYC 596 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 L S+ + RL L+ T +GF IAE D R G +LG +Q G Sbjct: 597 FLFSEAENSE-AQERLRALEETNNGFEIAEADFALRGPGNVLGTEQHG 643 >gi|34391529|gb|AAN61057.1| RecG [Borrelia hermsii] Length = 687 Score = 325 bits (832), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 216/628 (34%), Positives = 328/628 (52%), Gaps = 38/628 (6%) Query: 39 TRFIDLLFYHPSSFIDRH---YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLN 95 T +L+ Y P + DR P E+ ++T+ + +H F +R K++ Sbjct: 30 TNIRELIEYFPKKYEDRKNIKTFPDSLEVRNCELMTVFT-VLEHRDFGNNFKRNLKLIAQ 88 Query: 96 DGTGEI-TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY---IFHNSQDV 151 EI +L F R L+ VF G+K + K + ++ +F + + Sbjct: 89 SENNEIFEILLFNRG--FLEGVFKVGQKFYIYSKFNYNDYTQMWSCSNFDSEVFSCNPE- 145 Query: 152 NFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-----PVLPEWIEKDLLQKKSFPSIAEAF 206 F I VYSL GL+ + EAL +PE+ L+ K S EA Sbjct: 146 RFKKIIPVYSLSEGLTSKKISSYVKEALVYFLKFGQSDVPEF----LINKYSLLPFHEAL 201 Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLA------GQIALLLMRKQFKKEIGIPINVEGK 260 N IH P FE A++ L Y E+ G+ ++ +RK E +P N Sbjct: 202 NEIHFP---SSFEMLEKAKKTLIYREIFLLQFFSRGKSSVFFLRK----ERNLPRN---- 250 Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320 + +I+ +PF TK Q AI +I+ D M R+LQGDVGSGKT+VA ++ +EA Sbjct: 251 LLDQIILKLPFKLTKDQRVAIDEIINDPESNKPMNRLLQGDVGSGKTIVAFLSSIPLIEA 310 Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380 G Q +M P +LA+QHY + ++ + + +TG++ + R + LE+I G ++I Sbjct: 311 GYQVALMVPTDLLARQHYNNLANILKDFNVSIAFLTGSLKKRDRDEVLEKIQSGTYSLVI 370 Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440 GTHA+F ++ +L +I+DEQH+FGV+QR +L K VLL++ATPIPR+L LT Sbjct: 371 GTHAIFSQGTKFKRLAYIIIDEQHKFGVEQREELKNKGEEVDVLLISATPIPRSLALTLF 430 Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500 GD++IS I PAGR P+ T + ++V E LK L++G + Y++ P I + N Sbjct: 431 GDLEISLIRRGPAGRIPVTTYLAKHGNEEKVYEFLKNELAKGHQVYFVYPLISSSQRFNL 490 Query: 501 RSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + +L F S+ +IH ++ KE +M F +L+AT+VIEVGID + Sbjct: 491 KDATSMCLNLKNIFVEYSVEMIHSKLESHVKEEIMHDFYLKRIDILVATSVIEVGIDCPN 550 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619 A+ +++E+AE FGL+ LHQ+RGRVGRG S LLY PL+++ RL +K DGF Sbjct: 551 ATCMVVEHAERFGLSTLHQIRGRVGRGSLKSFLFLLYKEPLTESGKFRLKTIKENIDGFK 610 Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIA 647 IAEEDLK R G + G++Q+G K IA Sbjct: 611 IAEEDLKLRGPGNLFGLEQTGYLKLKIA 638 >gi|302811380|ref|XP_002987379.1| hypothetical protein SELMODRAFT_446963 [Selaginella moellendorffii] gi|300144785|gb|EFJ11466.1| hypothetical protein SELMODRAFT_446963 [Selaginella moellendorffii] Length = 975 Score = 324 bits (831), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 212/618 (34%), Positives = 333/618 (53%), Gaps = 57/618 (9%) Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI---- 156 T +F KT + + EG K V+GK+K + + + Y + +F + Sbjct: 354 FTSSWFLNKT---ASGYPEGSKAAVSGKVKAMNRKSHFLLKEYAVKVIEGEDFDQLRNDG 410 Query: 157 EA--VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 EA VYS L+ + I L LP + + ++ K SI +A++ +H P Sbjct: 411 EAYPVYSSKGLLNPKKIQAFIQRLLKGLPTDIDPLPTEMRDKYDLLSIEQAYSTLHQP-- 468 Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE------GKIAQKILRN 268 + + + AR R+ +D+ Q+A LL R + G +N E ++ K+L Sbjct: 469 -TNLQGANVARRRIVFDDYFYLQLAFLLQRNCLR---GSTVNNELEMDKWSSLSLKVLNA 524 Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 +PF T Q A +I+ D+ Q+ M R+LQGDVG GKT+VA +A+ V +G QA +MA Sbjct: 525 LPFKLTAGQIKAASEIMWDLRQQAPMSRLLQGDVGCGKTIVAFLALLDVVSSGYQAALMA 584 Query: 329 PIGILAQQHYE----FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384 P + QHY+ +++ + + + +++G++ R E IA+ + +I+GTHA Sbjct: 585 PTDFVVSQHYKQFLSWLEVLDEKDRPKIALLSGSLSAGEARLVREGIANREISLILGTHA 644 Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKL--------------------TQKATAPHVL 424 L +S + L L ++DEQHRFGV QR +L + A+ HVL Sbjct: 645 LISNSTNFPALGLAVIDEQHRFGVGQRDRLKTAHASEAVEPDLDDADLERARLASTTHVL 704 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEG 482 LM+ATPIPR+L LT GD+ +S+I E P GR+P+ T ++P + E ++ L G Sbjct: 705 LMSATPIPRSLALTCHGDMSLSQINEIPPGRQPVDTYVLPDDEGGRRRAYELVRAELENG 764 Query: 483 KKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538 +A+++ P I E S+F R+ V F+ + + F A+ HGRM + + F+ Sbjct: 765 GRAFFVYPLINES--SSFEHQRAAVTEFDKVVKEFKDYKCALAHGRMKPDLRNQELKRFR 822 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G C++L+AT V+EVGIDV +A++++IE+AE +GLAQLHQLRGRVGRG S CILL Sbjct: 823 EGECQILVATKVVEVGIDVPEATVMLIESAEGYGLAQLHQLRGRVGRGTRKSFCILL--- 879 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLE 657 + RL +L++T DGF +AEEDLK R G++LG +QSG +F++A+ + +L Sbjct: 880 TCCDTAVERLKLLESTTDGFRLAEEDLKMRGPGDLLGKRQSGTHLEFVLARLGEDNDILL 939 Query: 658 IARKDAKHILTQDPDLTS 675 AR A+ +L D +L S Sbjct: 940 QARAAAEELLETDKNLES 957 >gi|329947047|ref|ZP_08294459.1| putative ATP-dependent DNA helicase RecG [Actinomyces sp. oral taxon 170 str. F0386] gi|328526858|gb|EGF53871.1| putative ATP-dependent DNA helicase RecG [Actinomyces sp. oral taxon 170 str. F0386] Length = 752 Score = 324 bits (831), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 227/707 (32%), Positives = 351/707 (49%), Gaps = 90/707 (12%) Query: 70 VTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNV--FFEGRKIT 124 TI I++ SS + + R ++ + DG + ++ F +M G + Sbjct: 50 ATIQAQIARASSRRTRSGRAPALMEATVTDGVSTMDVVQFGAAGQMRARATRLAPGTTVL 109 Query: 125 VTGKIKKLKNRIIMVHPH-YIFHNSQDVN--------FPLIEAVYSLPTGLSVDLFKKII 175 ++GK+ + R + +P Y+ + P+ +LP+ SV + + Sbjct: 110 MSGKVGLHRGRKQLTNPRLYVLDELDEAEREALLARPIPIYPGTEALPS-WSVAKAVRTV 168 Query: 176 VEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232 ++ L V LPE DL + A+ +H P A +W + AR RL ++E Sbjct: 169 LDQLGPGDVADPLPE----DLRRSAGLIDAYTAYRWVHRPDDA--HQWKA-ARSRLRHEE 221 Query: 233 LLAGQIALLLMR---KQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288 L Q+AL R + + + P V + + ++P++ T Q ++I D+ Sbjct: 222 ALILQVALAQRRAHHEATRTAVAWPEPQVVDSLRADLDASLPYNLTAGQVRVGEEIAADL 281 Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY---- 344 ++ M R+LQGDVGSGKTLV+L AM V+ GGQA ++AP +LA QH+ ++ Sbjct: 282 ARTVPMQRLLQGDVGSGKTLVSLRAMLQVVDGGGQAALLAPTEVLAAQHHSSLEALLGPL 341 Query: 345 -------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 V ++TG+ P A RR+ L +A G+ I++GTHAL D++Q L L Sbjct: 342 ALSGMLGEAERATRVHLLTGSTPAAQRRRILADLAAGEPAIVVGTHALLSDTVQIPFLGL 401 Query: 398 VIVDEQHRFGVQQRLKL------TQKATA----PHVLLMTATPIPRTLVLTSLGDIDISK 447 V+VDEQHRFGV QR L T AT PH+L+MTATPIPRT+ +T GD+ S Sbjct: 402 VVVDEQHRFGVAQRDALRERGGVTDSATGQRHTPHLLVMTATPIPRTIAMTVFGDLATSV 461 Query: 448 ITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQIE----------- 493 + E PAGR P+ T ++P +R ++ + R + G + Y +CP+IE Sbjct: 462 LDELPAGRSPVPTHLVPWSRTSWVEGIWRRAAKETASGGRVYVVCPRIEVGDDEPQQEAA 521 Query: 494 ----------------EKKESNFR-----SVVERFNSLHEHFTS----SIAIIHGRMSDI 528 E +ES R + VE + E + + + GRMS Sbjct: 522 MASGADTAAEQTPGPLELEESCSRPDRPLAAVEEWRQRLEAEPALEGVGVGSLTGRMSSE 581 Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588 DK S M F +G +L+ATTVIEVG+DV +A++++I +A+ FGL+QLHQLRGRVGRG Sbjct: 582 DKASAMADFASGATPVLVATTVIEVGVDVPEATMMVILDADRFGLSQLHQLRGRVGRGSR 641 Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648 S C+ + + ++ RL +T DGF +AE DL R EG++LG QSG L Sbjct: 642 ESVCVAVTGVEVGSTAFHRLKAFASTTDGFALAEADLDLRSEGDVLGASQSGRTSGLDLL 701 Query: 649 PELHDS-LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694 D+ L+ AR++A+ I+ DP L R + I+ L + ++AF Sbjct: 702 RVTRDARLIATARREAERIVADDPQLREHRALAAAIVERLDEESQAF 748 >gi|229818293|ref|ZP_04448574.1| hypothetical protein BIFANG_03593 [Bifidobacterium angulatum DSM 20098] gi|229784163|gb|EEP20277.1| hypothetical protein BIFANG_03593 [Bifidobacterium angulatum DSM 20098] Length = 836 Score = 324 bits (830), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 215/581 (37%), Positives = 306/581 (52%), Gaps = 72/581 (12%) Query: 171 FKKIIVEALSRLPVLPEWI--EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERL 228 F + EA+ +LPE + E+ L+ + AEAF IH+P + F L Sbjct: 267 FTGTLAEAIP--DILPEQVRTERGLMHR------AEAFRAIHDPASVQAFHQ---GIATL 315 Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEG----KIAQKILRNIPFSPTKSQESAIKDI 284 Y+E Q ALL R+ P +G ++ ++ + ++PF T Q+ I DI Sbjct: 316 RYEEAFICQTALLQARQANGGASAHPCAGDGATGERLVERFVASLPFQLTDGQQQVIADI 375 Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344 DM+Q + M R+LQG+VGSGKT+VAL AM AVEAG QAV++AP +LA+QH E I+ Sbjct: 376 RNDMAQNHPMQRLLQGEVGSGKTVVALAAMLQAVEAGYQAVLVAPTLVLAEQHAENIRTM 435 Query: 345 TQ---NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401 + + I V +ITG M A RRKA A G+ II+ THA F + Q L LV++D Sbjct: 436 VEGLHSPSIPVTLITGGMKLAARRKAHAIAASGEPGIIVATHAAFSTAFQASNLALVVID 495 Query: 402 EQHRFGVQQRLKLTQK---ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 EQHRFGV+QR L K + PH+L+MTATPIPRT +T GD+DIS +TE P GRKPI Sbjct: 496 EQHRFGVEQRESLQSKPIDGSTPHMLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPI 555 Query: 459 KTVIIPINRID-----EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 +T + IN D + ++ + G++AY +C +I++ E +R N + Sbjct: 556 RTFV--INEEDGRTMANMFSHIRARIDAGERAYIVCARIDDPSEGADAGAADRDNGRGDD 613 Query: 514 FTSSI--------------------------------------AIIHGRMSDIDKESVMD 535 ++ A + GR D K VM Sbjct: 614 ANGAVLDPYATDDDMAQQRPPLHTVMQIKERLQKLPQFQGIAFATLTGRDKDDVKTQVMA 673 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F +G +L++TTVIEVG+DV AS ++I +A+ +GL+QLHQLRGRVGRG S L+ Sbjct: 674 DFASGVTPVLVSTTVIEVGVDVPQASCMVIFDADRYGLSQLHQLRGRVGRGGTDSWAFLI 733 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS- 654 + +RL V+ ++ DG IA+ DL+ R G++LG QSGM L + D+ Sbjct: 734 SRAEPGSIAESRLEVIHDSLDGAQIAQADLEFRGAGDVLGDTQSGMRSSLKLLRVVKDAD 793 Query: 655 LLEIARKDAKHILTQDPDL-TSVRGQSIRILLYLYQYNEAF 694 L+ AR A+ +L DP+L SV Q +L + NEAF Sbjct: 794 LIVDARSRAERMLADDPELKGSV--QLAGAVLDFTRGNEAF 832 >gi|28493533|ref|NP_787694.1| ATP-dependent DNA helicase [Tropheryma whipplei str. Twist] gi|28476575|gb|AAO44663.1| ATP-dependent DNA helicase [Tropheryma whipplei str. Twist] Length = 768 Score = 323 bits (829), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 232/703 (33%), Positives = 372/703 (52%), Gaps = 68/703 (9%) Query: 19 VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78 GKK + L+K +R IDLL Y+P +I R K+SE+ VTI G + Sbjct: 92 TGKKMASLLAKEFGI-----SRVIDLLTYYPRRYICRGKLTKLSELIPGDEVTIVGRV-- 144 Query: 79 HSSFQLQKRRPYK------ILLNDGTGEITLLFFYR--KTEMLKNVFFEGRKITVTGKIK 130 ++R+ + + L+DG I L+FF++ + E LK G +GK+ Sbjct: 145 ---LSTEQRKTFSGANFLSVTLSDGENIIQLVFFHQPWRAENLK----PGACGLFSGKVT 197 Query: 131 KLKNRIIMVHPHYIFHNSQDVN----------FPLIEAVYSLPT---GLSVDLFKKIIVE 177 + N+ + HP Y +S+ P+ A + P+ +VDL +E Sbjct: 198 EFNNKKQLSHPEYELFSSEPTREQIQKWNEQIIPIYRACIACPSWKIARAVDL----ALE 253 Query: 178 ALSRLPVLPEWIEKDLLQKK-SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 A+ V D + + S+ +AF +IH+P ++ E A+E L + E Sbjct: 254 AVKGQTV-------DFMSGNYGYMSVEKAFYVIHHPTDNEELE---AAKESLRFFEAFLL 303 Query: 237 QIALLLMRKQFKKEIGIP--INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 Q ALL RK+F+ I G ++ + FS T Q A +I +D+S M Sbjct: 304 QSALL-HRKRFRNRASATPFIRKNGGFLERFDARLEFSQTNDQLRAADEIFEDLSLSEPM 362 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R+L G+VGSGKTLVA+ AM A + QAV++AP +LA+QH+ + + + ++ EI Sbjct: 363 TRLLHGEVGSGKTLVAIRAMLLAADNDMQAVLVAPTEVLAKQHHRNLTRMLGH-ELCAEI 421 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 + R K RIA G++ IIIGTH++F ++ L LV++DEQHRFGV QR +L Sbjct: 422 QPSLL--LGREKHTLRIASGRSKIIIGTHSVFSKKTVFHNLALVVIDEQHRFGVGQRDEL 479 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID----E 470 K +PH+L+++ATPIPRT+ L+ L I IS+I P+G+ I T ++P+ E Sbjct: 480 LLKGDSPHLLMLSATPIPRTVALSLLNFIAISEIKTPPSGKAEISTHVVPLAEKPQWGRE 539 Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH---FTSSIAIIHGRMSD 527 VI R+ + +G + + + P IE+ + + S+ L E + I+ +HG+++ Sbjct: 540 VIRRISEEIQKGHQVFVVAPVIEQSR-TGAASISALLRELEETPLLQGAKISRLHGKLTA 598 Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587 + E M+ F G +L++TT+IEVGIDV +A+ ++I +A+ FG+AQLHQLRGR+GRG Sbjct: 599 AECEKSMEEFSCGASDILLSTTMIEVGIDVPNATAMVIVSADRFGIAQLHQLRGRIGRGN 658 Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 C+L+ + P + +RL ++ T DGF +AE D+K R+EG++LG+ QSG + + Sbjct: 659 LPGVCLLVTNAPEGSAARSRLDLVARTHDGFSLAEIDMKMRREGDLLGLGQSGQGNYRLL 718 Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690 + + +L AR A+ I+ D L + + +R L+L QY Sbjct: 719 RLDEDLQVLSDARLHAEGIMENDIKLE--KNKLLR--LFLSQY 757 >gi|28572355|ref|NP_789135.1| ATP-dependent DNA helicase RecG [Tropheryma whipplei TW08/27] gi|28410486|emb|CAD66872.1| ATP-dependent DNA helicase RecG [Tropheryma whipplei TW08/27] Length = 673 Score = 323 bits (827), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 227/683 (33%), Positives = 365/683 (53%), Gaps = 63/683 (9%) Query: 39 TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYK------I 92 +R IDLL Y+P +I R K+SE+ VTI G + ++R+ + + Sbjct: 12 SRVIDLLTYYPRRYICRGKLTKLSELIPGDEVTIVGRV-----LSTEQRKTFSGANFLSV 66 Query: 93 LLNDGTGEITLLFFYR--KTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD 150 L+DG I L+FF++ + E LK G +GK+ + N+ + HP Y +S+ Sbjct: 67 TLSDGENIIQLVFFHQPWRAENLK----PGACGLFSGKVTEFNNKKQLSHPEYELFSSEP 122 Query: 151 VN----------FPLIEAVYSLPT---GLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK 197 P+ A + P+ +VDL +EA+ V D + Sbjct: 123 TREQIQKWNEQIIPIYRACIACPSWKIARAVDL----ALEAVKGQTV-------DFMSGN 171 Query: 198 -SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-- 254 + S+ +AF +IH+P ++ E A+E L + E Q ALL RK+F+ Sbjct: 172 YGYMSVEKAFYVIHHPTDNEELE---AAKESLRFFEAFLLQSALL-HRKRFRNRASATPF 227 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 I G ++ + FS T Q A +I +D+S M R+L G+VGSGKTLVA+ AM Sbjct: 228 IRKNGGFLERFDARLEFSQTNDQLRAADEIFEDLSLSEPMTRLLHGEVGSGKTLVAIRAM 287 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 A + QAV++AP +LA+QH+ + + + ++ EI + R K RIA G Sbjct: 288 LLAADNDMQAVLVAPTEVLAKQHHRNLTRMLGH-ELCAEIQPSLL--LGREKHTLRIASG 344 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434 ++ IIIGTH++F ++ L LV++DEQHRFGV QR +L K +PH+L+++ATPIPRT Sbjct: 345 RSKIIIGTHSVFSKKTVFHNLALVVIDEQHRFGVGQRDELLLKGDSPHLLMLSATPIPRT 404 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI----DEVIERLKVVLSEGKKAYWICP 490 + L+ L I IS+I P+G+ I T ++P+ EVI R+ + +G + + + P Sbjct: 405 VALSLLNFIAISEIKTPPSGKAEISTHVVPLAEKPQWGREVIRRISEEIQKGHQVFVVAP 464 Query: 491 QIEEKKESNFRSVVERFNSLHEH---FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 IE+ + + S+ L E + I+ +HG+++ + E M+ F G +L++ Sbjct: 465 VIEQSR-TGAASISALLRELEETPLLQGAKISRLHGKLTAAECEKSMEEFSCGASDILLS 523 Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607 TT+IEVGIDV +A+ ++I +A+ FG+AQLHQLRGR+GRG C+L+ + P + +R Sbjct: 524 TTMIEVGIDVPNATAMVIVSADRFGIAQLHQLRGRIGRGNLPGVCLLVTNAPEGSAARSR 583 Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667 L ++ T DGF +AE D+K R+EG++LG+ QSG + + + + +L AR A+ I+ Sbjct: 584 LDLVARTHDGFSLAEIDMKMRREGDLLGLGQSGQGNYRLLRLDEDLQVLSDARLHAEGIM 643 Query: 668 TQDPDLTSVRGQSIRILLYLYQY 690 D L + + +R L+L QY Sbjct: 644 ENDIKLE--KNKLLR--LFLSQY 662 >gi|228966803|ref|ZP_04127847.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar sotto str. T04001] gi|228792902|gb|EEM40460.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar sotto str. T04001] Length = 405 Score = 323 bits (827), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 164/373 (43%), Positives = 251/373 (67%), Gaps = 5/373 (1%) Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R+LQGDVGSGKT+VA I + A+ A Q +M P ILA+QHY+ + + + + VE Sbjct: 1 MNRLLQGDVGSGKTVVAAIGLYASKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVE 60 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++T ++ A RR L ++ G+ I++GTHAL QD + +++L LVI DEQHRFGV QR Sbjct: 61 LLTSSVKGARRRDILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRV 120 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 L +K +P VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D V+ Sbjct: 121 LREKGESPDVLFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLG 180 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKE 531 ++ + +G++AY ICP IEE ++ + ++ ++ + L H+ + ++HGR+S +KE Sbjct: 181 FVEKEIKKGRQAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKE 240 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 +M F ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S Sbjct: 241 EIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSY 300 Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651 C+L+ P S+ R+ ++ T DGF+++E+DL+ R G+ G KQSG+P+F +A + Sbjct: 301 CLLIADPK-SETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-V 358 Query: 652 HD-SLLEIARKDA 663 HD LE AR+DA Sbjct: 359 HDYRALETARQDA 371 >gi|186498546|ref|NP_178253.3| ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding [Arabidopsis thaliana] gi|330250357|gb|AEC05451.1| ATP-dependent DNA helicase RecG [Arabidopsis thaliana] Length = 973 Score = 322 bits (826), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 212/635 (33%), Positives = 329/635 (51%), Gaps = 77/635 (12%) Query: 106 FYRKTEMLKNVFFE--------GRKITVTGKIKKLK----------NRIIMVHPHYIFHN 147 F+R T F G + ++GK+K L+ N ++ H Sbjct: 328 FFRGTRFTWQPFLNSIQEKHKVGDLVCISGKVKSLRAEDHFEMREYNIDVLKDEEESSHR 387 Query: 148 SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFN 207 +Q +P +Y GL+ +I AL LP + I K++ + PS+ +A+ Sbjct: 388 AQGRPYP----IYPSKGGLNPKFLSDVISRALRVLPANMDPIPKEITKVFGLPSLNDAYV 443 Query: 208 IIHNPRKAKDFEWTSPARERLAYDELLAGQIALL--------------LMRKQFKKEIGI 253 IH P K + AR+RL +DE Q+A L ++ ++F+K + Sbjct: 444 GIHEP---KTLDEADLARKRLIFDEFFYLQLARLYQMLQSLGTKIEKDVLLEKFRKPVLN 500 Query: 254 PINVE--GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 + +E + + L+ +P+S T SQ SA+ +I+ D+ + M R+LQGDVG GKT+VA Sbjct: 501 SVYIEEWSTLTKSFLKALPYSLTPSQLSAVSEIIWDLKRPVPMNRLLQGDVGCGKTVVAF 560 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII-----VEIITGNMPQAHRRK 366 +A + +G QA MAP +LA QHYE + +N + + + ++TG+ P R Sbjct: 561 LACMEVIGSGYQAAFMAPTELLAIQHYEQCRDLLENMEGVSSKPTIGLLTGSTPAKQSRM 620 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK--------- 417 + + G IIGTH+L + I+Y L + +VDEQ RFGV QR K K Sbjct: 621 IRQDLQSGAISFIIGTHSLIAEKIEYSALRIAVVDEQQRFGVIQRGKFNSKLYGTSMISK 680 Query: 418 --------------ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463 + APHVL M+ATPIPR+L L GDI +++IT P GR P++T I Sbjct: 681 SGSSDSDDTSKADLSMAPHVLAMSATPIPRSLALALYGDISLTQITGMPLGRIPVETHIF 740 Query: 464 PINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFTS-SIA 519 N I EV + L G + Y + P I++ ++ R+ + + F + Sbjct: 741 EGNETGIKEVYSMMLEDLKSGGRVYVVYPVIDQSEQLPQLRAASAELEIVTKKFPKYNCG 800 Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579 ++HGRM DKE ++ F++G ++L++T VIE+G+DV DAS++++ NAE FG+AQLHQL Sbjct: 801 LLHGRMKSDDKEEALNKFRSGETQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQL 860 Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639 RGRVGRG S C+L+ S NS RL++L + DGF +A DL R G++LG KQS Sbjct: 861 RGRVGRGTRKSKCLLVGS---STNSLKRLNMLGKSSDGFYLANIDLLLRGPGDLLGKKQS 917 Query: 640 G-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 G +P+F +A+ E+ ++L+ A A ++L DL Sbjct: 918 GHLPEFPVARLEIDGNMLQEAHIAALNVLGDSHDL 952 >gi|326773647|ref|ZP_08232930.1| ATP-dependent DNA helicase RecG [Actinomyces viscosus C505] gi|326636877|gb|EGE37780.1| ATP-dependent DNA helicase RecG [Actinomyces viscosus C505] Length = 752 Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 234/757 (30%), Positives = 367/757 (48%), Gaps = 94/757 (12%) Query: 19 VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78 VGK+ + L+K ET DLL P + + + E TI + + Sbjct: 5 VGKRTAAQLAK-----QGVET-GADLLRLLPRRYDTWGELTDMRTLVEGEQATIQAQVVR 58 Query: 79 HSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNV--FFEGRKITVTGKIKKLK 133 SS + + R ++ + DG + L+ F +M G + ++GK+ + Sbjct: 59 ASSRRTRSGRVPALMEATVTDGASTMDLVQFGAAGQMRARAAQLAPGTTVLLSGKVGFHR 118 Query: 134 NRIIMVHPHYIFHNSQDVN---------FPLIEAVYSLPTGLSVDLFKKII--VEALSRL 182 R + +P + D + P+ +LP+ L + ++ +E Sbjct: 119 GRKQLSNPRLYVLDELDEDERAALLARPMPIYPGTEALPSWLVAKAVRSVLDQLEPGDVA 178 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 LPE +L ++ A+ +H P + +W + AR+RL ++E L Q+AL Sbjct: 179 DPLPE----ELRREAELVDAYTAYRWVHRPEDSG--QWKA-ARKRLRHEEALILQVALAQ 231 Query: 243 MRKQFKK---EIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 R + + P+ EG + + +P+ T Q+ ++I D+++ M R+L Sbjct: 232 RRAHHEATCTAVAWPVPEEEGSLRADLDARLPYDLTAGQKRVGEEISADLARTVPMQRLL 291 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQN 347 QGDVGSGKTLVAL AM V GGQ ++AP +LA QH+ ++ Sbjct: 292 QGDVGSGKTLVALRAMLQVVGGGGQTALLAPTEVLAAQHHSSLEAVLGPMARLGMLGGAE 351 Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407 V ++TG+ P A RR+ L +A G+ I++GTHAL D++Q L LV+VDEQHRFG Sbjct: 352 RATRVHLLTGSTPAAQRRRILTDLAAGEPAIVVGTHALLSDTVQIPFLGLVVVDEQHRFG 411 Query: 408 VQQ------RLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 V Q R LT AT PH+L+MTATPIPRT+ +T GD+ S + E PAGR Sbjct: 412 VAQRDALRERGGLTDPATGQTHTPHLLVMTATPIPRTIAMTVFGDLATSVLDELPAGRSV 471 Query: 458 IKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVE---- 505 + T ++P +R ++ + R ++ G + Y +CP+IE E + + VE Sbjct: 472 VPTHLVPWSRTSWVEGIWRRAAKEVASGGRVYVVCPRIEVDDEPRHTPMDGAAAVETDDG 531 Query: 506 -RFNSLHEHFTSS--------------------------IAIIHGRMSDIDKESVMDSFK 538 + +L E S + ++ GRMS DK + M F Sbjct: 532 PKQEALAEEGDGSHPDRPLAAVEDWRRRLAGEPALGGIGVGVLTGRMSGEDKAAAMADFA 591 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 +G +L++TTVIEVG+DV +AS+++I +AE FGL+QLHQLRGRVGRG S C+ + Sbjct: 592 SGNTPVLVSTTVIEVGVDVPEASMMVILDAERFGLSQLHQLRGRVGRGSRPSLCVAVTGA 651 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLE 657 + ++ RL +T DGF +AE DL+ R EG++LG QSG L D+ L+ Sbjct: 652 EVGSIAFHRLKAFASTTDGFALAEADLELRSEGDVLGASQSGRTSGLDLLRVTRDARLIA 711 Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694 AR+ A+ I+ DP L+ R + I+ L + ++AF Sbjct: 712 TARRQAERIVAADPQLSDHRALAAAIVERLDEESQAF 748 >gi|312140466|ref|YP_004007802.1| dead/deah box helicase [Rhodococcus equi 103S] gi|325675917|ref|ZP_08155600.1| DNA helicase RecG [Rhodococcus equi ATCC 33707] gi|311889805|emb|CBH49122.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S] gi|325553155|gb|EGD22834.1| DNA helicase RecG [Rhodococcus equi ATCC 33707] Length = 751 Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 213/704 (30%), Positives = 366/704 (51%), Gaps = 79/704 (11%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP--YKILLNDGTGE 100 DLL ++P + + E E VTI + + ++ RR K++L + Sbjct: 31 DLLRHYPHRYAAQGRELTEKEPEEGSHVTIIARVVKADVVNMKSRRGQMLKVVLAAESQS 90 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF----HNSQD--VNFP 154 + + FF +K+ G + +G +K +N+ + HP Y+ +D V+ Sbjct: 91 VDVTFF--NPHKVKHAVRVGVRAMFSGTVKYFRNKWSLTHPSYLILPEPAEGEDPVVSMA 148 Query: 155 LIEAVYSLP----------TGLSVDLFKKIIV-------------------EALSRLPVL 185 ++ SL +G+ + +F + ++ + L +L + Sbjct: 149 HVQGAGSLAGMARATQDSGSGVDMSIFDRELIPLYPATREVESWTILRCVRQVLDQLDTV 208 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 + + + + + EA ++H P D A+ERL +DE A Q+ L R+ Sbjct: 209 EDPLPDAVRGEHGLIGLDEALRLVHLPETRDDI---GRAQERLRFDEAAALQLVLAQRRR 265 Query: 246 QFKKEIG--IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 + P +G +A +PF T+ Q+ ++I D+++++ M R+LQG+VG Sbjct: 266 DIAARVAPQCPPKPDG-LAAAFDEMLPFELTEGQKEVAEEISADLARRHPMNRLLQGEVG 324 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIV 352 SGKT+VAL AM AV+AG Q ++AP +LA QH +++ + V Sbjct: 325 SGKTIVALRAMLQAVDAGYQCALLAPTEVLAAQHARSLREMLGPLGAAGELGAADVATKV 384 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 ++TG+M RR AL I G + I+IGTHAL QD+++++ L V+VDEQHRFGV+QR Sbjct: 385 TLLTGSMSTKARRAALLDIVTGDSGIVIGTHALIQDNVEFFDLGFVVVDEQHRFGVEQRD 444 Query: 413 KLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469 +L ++A +PH+L+MTATPIPRT+ +T LGD++ S + + P GR PI + ++ + Sbjct: 445 ELRKRAKEGLSPHLLVMTATPIPRTIAMTVLGDLETSTLRQLPQGRAPIVSKVVAARQTP 504 Query: 470 EVI----ERLKVVLSEGKKAYWICPQIEE-----------KKESNFRSVVERFNSLHE-- 512 + + ER++ +++G++AY +C +I + K+ +S V+ F+ L Sbjct: 505 QWVARAWERIREEVADGRQAYVVCSRIGDGDSDAELIKAGKEPPETKSAVDLFDELRSGP 564 Query: 513 -HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 H + SD +K++VM F G +LI TTV+EVG++V +A+++++ +A+ F Sbjct: 565 MHDLRLGLLHGRLPSD-EKDAVMRDFTAGAIDVLICTTVVEVGVNVPNATVMVLVDADRF 623 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631 G++QLHQLRGRVGRG CIL+ ++ RL+ + T DGF +A+ DL+QR+EG Sbjct: 624 GVSQLHQLRGRVGRGSHQGLCILITDMMPGSPAFERLTAVAGTNDGFELAQLDLRQRREG 683 Query: 632 EILGIKQSGMPKFLIAQPEL-HDSLLEIARKDAKHILTQDPDLT 674 ++LG QSG L L H+ ++ A++ A+ ++ DPDL+ Sbjct: 684 DVLGSAQSGSATTLRLLSLLEHEDVIASAQEFARGVVDDDPDLS 727 >gi|308807965|ref|XP_003081293.1| DNA helicase RecG (ISS) [Ostreococcus tauri] gi|116059755|emb|CAL55462.1| DNA helicase RecG (ISS) [Ostreococcus tauri] Length = 1259 Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 209/529 (39%), Positives = 311/529 (58%), Gaps = 38/529 (7%) Query: 167 SVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR 225 S+D+F VE L PV + + LL + S +EA IH P K+ E + AR Sbjct: 705 SMDIF----VEKLPADPVEVSMGRDNPLLSELGLLSHSEAVKNIHRP---KNVEIVAQAR 757 Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPIN--VEG------KIAQKILRNIPFSPTKSQ 277 ERLA++ELL Q+ALL R + + +P++ EG + ++ +PF+ T+SQ Sbjct: 758 ERLAFEELLLLQVALLQERSRLQ---ALPVSETTEGVCIVGTALVDELRTELPFALTRSQ 814 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 ES++++IL DM+ MLR+LQGDVG GKT+VA +++ AAV AG Q MAP +LA QH Sbjct: 815 ESSLEEILSDMAGPAPMLRLLQGDVGCGKTVVAAMSLLAAVGAGHQGAFMAPTEVLATQH 874 Query: 338 Y----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 + E + + +++ ++TG+ A R + LE ++ G+ II+GTHAL + + + Sbjct: 875 HRVLTELLSQMRDPPKVV--LLTGSTKTAERAQILEDLSSGKIGIIVGTHALIHEKVVFN 932 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452 L + +VDEQHRFGV+QR L K PH+L M+ATPIPRTL +T G++ +S I EKP Sbjct: 933 SLGIAVVDEQHRFGVEQRAALLSKGKVPPHMLTMSATPIPRTLAMTKFGEMALSVIDEKP 992 Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV---ERFNS 509 AGR PI T + ++ D E ++ + +G +AY I ++E S V E + Sbjct: 993 AGRLPIITKVCAVDEHDIAYEAMRDEVRQGAQAYIIVRLVQESGSSRMSEVKGAEEEYAR 1052 Query: 510 LHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 L + + ++HG++ +K + ++ F G + L+AT+V+EVG+DV +ASIIIIE+A Sbjct: 1053 LVSKYPNVRFGLLHGQLGAEEKAAALEKFSAGETQALVATSVVEVGVDVPNASIIIIEDA 1112 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT-------RLSVLKNTEDGFLIA 621 + FGLA LHQLRGRVGRG S C LL+ P + +N+ + RL VL+ + +GF IA Sbjct: 1113 DGFGLAALHQLRGRVGRGSRQSKCFLLHTPGVGENAESKEDRARDRLRVLEQSNNGFRIA 1172 Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQ 669 E DL+ R GE+ G KQSG L D LLE ARK A ++++ Sbjct: 1173 ESDLQLRGAGELFGTKQSGQQVNLFHASMSTDLYLLEAARKAAAEMISR 1221 >gi|300781318|ref|ZP_07091172.1| DNA helicase RecG [Corynebacterium genitalium ATCC 33030] gi|300533025|gb|EFK54086.1| DNA helicase RecG [Corynebacterium genitalium ATCC 33030] Length = 720 Score = 322 bits (825), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 224/688 (32%), Positives = 355/688 (51%), Gaps = 60/688 (8%) Query: 44 LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITL 103 LL ++P ++ Y + ++ G I Q + KR +K ++DG I + Sbjct: 48 LLEHYPRKYLHYGYGDALEGALPGDTISFIGVI-QSTRMIHGKRTIFKAQVSDGRNTIDM 106 Query: 104 LFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLP 163 FF V EG TGK+ + HP +I +N P S Sbjct: 107 SFF--NARYAPRVLAEGTLGMFTGKLSYFNGMPQLQHPDFIL-----LNQPSFSGEKSSG 159 Query: 164 TGLSVDLFKKI--------IVEALSRLPV------LPEW---------------IEKDL- 193 S K++ ++ LPV + W +E+ L Sbjct: 160 ATHSSGSMKQLAAFGDPDEMLAGREWLPVYAAKKNVSTWTIMGAVATVLEHIGEVEEPLG 219 Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL-MRKQFKKEIG 252 + F S+ +A IH P AR RL Y+E L ++AL++ +R++ Sbjct: 220 FTPEGFISLQDALWQIHLPGP----HGPDAARNRLKYNEAL--RVALIMAVRREDTAHRT 273 Query: 253 IPI--NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310 P V+ + ++L +PFS T Q + +I D+ + M R+LQG+VGSGKT+VA Sbjct: 274 APALPRVDKRNQAQLLSALPFSLTDGQLGVLDEITSDLQRTIPMTRLLQGEVGSGKTIVA 333 Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII--TGNMPQAHRRKAL 368 L AM AV+ G Q ++AP +L QH + ++K T + ++ TG+MP +++AL Sbjct: 334 LAAMLQAVDNGMQCALLAPTEVLTLQHEKSLRKTLMRTGVHARVVALTGSMPTVQKQEAL 393 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--APHVLLM 426 I G+A I++GTHA+ Q+S++++ L V+VDEQHRFGV+QR L KA PH+L+M Sbjct: 394 LAIMTGEADIVVGTHAIIQESVEFFNLGFVVVDEQHRFGVEQRDMLRDKAGDITPHLLVM 453 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGK 483 TATPIPRT+ +T GD+++S + E P GRKPI++ I+P + + +++ ++ G Sbjct: 454 TATPIPRTIAITVFGDLEVSTLRELPGGRKPIQSAIVPEFKETWVARAWVKIREEVAAGH 513 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543 +AY +CP+IE + ER ++ E I I+HGRM DK+ +M F G Sbjct: 514 QAYIVCPRIE--GPGGVLEMAERLQAV-ELQGLRIEILHGRMKGEDKDRIMSEFSAGEID 570 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +LI+TTVIEVG+DV +A+++++ +EHFG++QLHQLRGRVGRG S C+ Sbjct: 571 VLISTTVIEVGVDVPNATVMMVRESEHFGVSQLHQLRGRVGRGGHQSLCLFHTFAEPDTP 630 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKD 662 R+S + DGF +AE DL+ R+EG++LG QSG + L + D +++ A D Sbjct: 631 QLERVSRIAEVSDGFELAELDLEIRQEGDVLGTSQSGKERQLKLLNLVEDYEIIQRAYDD 690 Query: 663 AKHILTQDPDLTSVRGQSIRILLYLYQY 690 A I+ +D +L R + ++L ++Y Sbjct: 691 AAEIVARDIEL--ARSVTEEMILEEFEY 716 >gi|313836631|gb|EFS74345.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL037PA2] gi|314928141|gb|EFS91972.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL044PA1] gi|314972139|gb|EFT16236.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL037PA3] gi|328907998|gb|EGG27758.1| putative ATP-dependent DNA helicase RecG [Propionibacterium sp. P08] Length = 749 Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 210/643 (32%), Positives = 335/643 (52%), Gaps = 66/643 (10%) Query: 85 QKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139 ++RRP +++L+DG + + FF + + +F GK+ + + +V Sbjct: 95 RERRPRQRLEVMLSDGKAHLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 154 Query: 140 HPHYIFHN---------------SQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSR 181 HP ++ + + V + +Y + L + + +++E+ Sbjct: 155 HPDFVMIDRNGRVVAGREEGKVMAAQVQRHGLLGLYPQTSKLRTWEIASVESMLLESTPE 214 Query: 182 L-PVLPEWI--EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L LPEW+ E DLL S+ EA++ IH+P + S ERL ++E +A Q Sbjct: 215 LEDTLPEWVRQEADLL------SLWEAYDAIHHPHSVAE---ASRGAERLIWEEAIATQA 265 Query: 239 ALLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 + + R+ ++ + + +G + +PF+PT Q+ + I D+S M R+ Sbjct: 266 TMAVRRRSAERHDAPVCPRRDGGLLAAFENRLPFAPTAGQDEVSRAIDADLSSDRPMHRL 325 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII------ 351 LQG+VGSGKT VAL AM V+AG QAV++AP +LAQQHY I Sbjct: 326 LQGEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTITSMLGGLASGGGLDAP 385 Query: 352 -----VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 V ++TG+M A R +L IA G A II+GTH+L + Y + LV+VDEQHRF Sbjct: 386 EISTGVALLTGSMKAAATRASLADIASGAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRF 445 Query: 407 GVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465 GV+QR LT A PH L++TATPIPRT+ +T GD+++S + E P+GR ++T ++ + Sbjct: 446 GVEQRSVLTTGDGARPHELVLTATPIPRTVAMTIFGDLEVSSLREVPSGRADVQTTVVDL 505 Query: 466 ----NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR------SVVERFNSLHEHFT 515 + + +R++ G + + ICP+I + + VE + + T Sbjct: 506 PAHGSWLTRAWQRIREEYDAGHQVFVICPRISSDDADDVEGGRPPTAAVEELAT--QLAT 563 Query: 516 SSIA-----IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 S+A +H R+ +K+ VMD F G ++LI+TTVIEVG+DV +A++++I +A+ Sbjct: 564 GSLAGLKVEALHSRLDSSEKDLVMDRFVKGESQVLISTTVIEVGVDVPNATMMVIMDADR 623 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630 FG++QLHQLRGR+GRG C+L+ P + RL + + DGF +AE DL QR E Sbjct: 624 FGVSQLHQLRGRIGRGSLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHE 683 Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKD-AKHILTQDPD 672 G +LG Q+G L L + + A KD A+ +T+ PD Sbjct: 684 GNVLGSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVTETPD 726 >gi|224532134|ref|ZP_03672766.1| ATP-dependent DNA helicase RecG [Borrelia valaisiana VS116] gi|224511599|gb|EEF82005.1| ATP-dependent DNA helicase RecG [Borrelia valaisiana VS116] Length = 686 Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 213/625 (34%), Positives = 330/625 (52%), Gaps = 38/625 (6%) Query: 43 DLLFYHPSSFIDRH---YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LND 96 DL+ + P + DR P S++ ++T+ + H F ++ K+ +ND Sbjct: 34 DLIEFFPVKYEDRQNIQTFPDFSKVKSCDMMTVFTVVG-HKKFGDSSKKNLKLTARSIND 92 Query: 97 GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY---IFHNSQDVNF 153 EI L F R L+NVF +K + K + ++ +F ++ + F Sbjct: 93 EPFEI--LLFNRA--FLENVFRIDKKFYIYSKFTYNDYSGLWSCSNFDSEVFSDNPE-RF 147 Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNP 212 I VYSL GL+ + EAL + + K L++K S S++EA IH P Sbjct: 148 KKILPVYSLTEGLTSKKISLYVKEALEYFFKFGQTDVPKFLIEKYSLLSLSEALKEIHFP 207 Query: 213 RKAKDFEWTSPARERLAYDELLAGQI--------ALLLMRKQFKKEIGIPINVEGKIAQK 264 E A++ L Y E+ Q L +K K++ ++ Sbjct: 208 ---SSLEMLEKAKKTLIYREIFLLQFFSRYRSSKVLFREKKHLSKDL----------LER 254 Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324 ++ ++PF T+ Q +I +I D+ M R+LQGDVGSGKTLVAL++ +EAG Q Sbjct: 255 VVSSLPFELTEDQRISIDEIFSDLGSSKPMNRLLQGDVGSGKTLVALLSGLPLIEAGYQV 314 Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384 MAP +LA+QHY+ + + + V ++TG++ + + +ALE I G + +IIGTHA Sbjct: 315 AFMAPTDLLARQHYDNLSNILSSFNVSVTLLTGSLKKKDKDQALESIKSGTSGLIIGTHA 374 Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444 +F +S ++ +L VI+DEQH+FGV QR +L +K +LLM+ATPIPR+ LT GD++ Sbjct: 375 IFYESTEFKRLAYVIIDEQHKFGVVQREELKKKGEGVDILLMSATPIPRSFALTLFGDLE 434 Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504 IS I P GR PI T + D+V E LK L +G + Y++ P I ++ + V Sbjct: 435 ISFIKTLPKGRLPITTYLAKHGNEDKVYEFLKKELIKGHQVYFVYPLISSSEKFELKDVN 494 Query: 505 ERFNSLHEHFTSSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 L E F+ + ++H ++ KE +M +F + +L+AT+VIEVGID +A+ + Sbjct: 495 NMCLKLKEVFSEYVVDMLHSKLPSDLKEEIMKNFYSKKVDILVATSVIEVGIDCPNATCM 554 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623 ++E+AE FGL+ LHQ+RGRVGRG S LLY PL+ RL +K DGF IAEE Sbjct: 555 VVEHAERFGLSTLHQIRGRVGRGNLQSFFFLLYKEPLTSAGKFRLKTIKENLDGFKIAEE 614 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQ 648 DL+ R G + G++Q+G K I+ Sbjct: 615 DLRLRGPGNLFGLEQAGYLKLKISN 639 >gi|313885076|ref|ZP_07818828.1| ATP-dependent DNA helicase RecG [Eremococcus coleocola ACS-139-V-Col8] gi|312619767|gb|EFR31204.1| ATP-dependent DNA helicase RecG [Eremococcus coleocola ACS-139-V-Col8] Length = 674 Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 213/679 (31%), Positives = 362/679 (53%), Gaps = 31/679 (4%) Query: 3 PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62 P+ LN A L +G+G K +++ DLL++ P F D RP S Sbjct: 2 PTTLNDSIAVL---KGIGPKSVQAFAQL------GVVTIADLLYHLPFRFNDIQERPLAS 52 Query: 63 EISEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120 + +E+ VT+ G + S+ ++R L ++ + F+ + + K V Sbjct: 53 ILDQEK-VTLKGRVITPPVVSYFGRRRSRLSFRLELEDHQVIQVVFFNQPYLNKQVALND 111 Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 K ++ GK + + ++ + + + ++ P VYS GL L + I +AL+ Sbjct: 112 EK-SIYGKWDQTRQTLMGMK---VLKETDNIFQP----VYSATKGLRQSLIVQAISQALA 163 Query: 181 RL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 P++PE + L ++ S A IH P+ K +E AR ++ Y E Q Sbjct: 164 EYGPLIPEAVPSFLNERHQLMSSRAALQGIHQPQSYKQYE---AARRKIIYQEFFDYQWQ 220 Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L +++ G+ ++ + ++ + ++ +PF T Q+ A+ +I D+ M R+LQ Sbjct: 221 LQTASFNHRQDKGLQVHYDVEVLKVFIKELPFELTSDQKKAVNEICLDLLAPYAMRRMLQ 280 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT+VA +AM A V G Q +M P ILA+QHY+ + + ++ + Sbjct: 281 GDVGSGKTIVAFLAMVAGVIGGYQVALMVPTEILAKQHYQNFCNLFPDLEDQTGLLISQI 340 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + I G +IIGTHAL QD++ ++KL L+++DEQHRFGV QR L + Sbjct: 341 SSKEKNELQLGIKKGFHQVIIGTHALIQDAVSFHKLGLLVIDEQHRFGVDQRQLLLDQNP 400 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 ++L MTATPIPR+L L+ GD+ +S I P+GR+PI+T ++ ++D++ ++ +L Sbjct: 401 GLNILQMTATPIPRSLALSIYGDMSVSTIQSLPSGRQPIQTRLVSEKQVDKLYLHMQEIL 460 Query: 480 SEGKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 ++ ++ Y++ P I++ + N +V + + + + I I+HG+M+ + M Sbjct: 461 AKEQQIYYVLPIIDQSEHLDQVENVLNVKAKLDQVFPDY--QIEILHGQMAKDQQARAMA 518 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +FK ++L+ATT++EVG+DV +A+++II++AE FGLAQLHQLRGRVGRG + S C L+ Sbjct: 519 AFKANEAQVLVATTMVEVGVDVPNATMMIIQSAERFGLAQLHQLRGRVGRGNQPSFCYLI 578 Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 +P ++ RL ++ + +GF I++ DLK R G++LG +QSG+P F A Sbjct: 579 GNPT-TEQGKARLKIMVDESNGFQISKADLKIRGMGDVLGRQQSGLPTFKYANIIEDSDS 637 Query: 656 LEIARKDAKHILTQDPDLT 674 L AR+D L DL Sbjct: 638 LNQARQDVAWCLQHYQDLN 656 >gi|302796276|ref|XP_002979900.1| hypothetical protein SELMODRAFT_444354 [Selaginella moellendorffii] gi|300152127|gb|EFJ18770.1| hypothetical protein SELMODRAFT_444354 [Selaginella moellendorffii] Length = 931 Score = 321 bits (822), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 211/616 (34%), Positives = 331/616 (53%), Gaps = 57/616 (9%) Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI---- 156 T +F KT + + EG K V+GK+K + + + Y +F + Sbjct: 310 FTSSWFLNKT---ASGYPEGSKAAVSGKVKAMNRKSHFLLKEYAVKVIDGEDFDQLRNDG 366 Query: 157 EA--VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 EA VYS L+ + I L LP + + ++ K SI +A++ +H P Sbjct: 367 EAYPVYSSKGLLNPKKIQVFIQRLLKGLPTDIDPLPTEVRDKYDLLSIEQAYSTLHQP-- 424 Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE------GKIAQKILRN 268 + + + AR R+ +D+ Q+A LL R + G +N E ++ K+L Sbjct: 425 -TNLQGANVARRRIVFDDYFYLQLAFLLQRNCLR---GSTVNNELEMDKWSSLSLKVLNA 480 Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 +PF T Q A +I+ D+ Q+ M R+LQGDVG GKT+VA +A+ V +G QA +MA Sbjct: 481 LPFKLTAGQIKAASEIMWDLRQQAPMSRLLQGDVGCGKTIVAFLALLDVVSSGYQAALMA 540 Query: 329 PIGILAQQHYE----FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384 P + QHY+ +++ + + + +++G++ R E IA+ + +I+GTHA Sbjct: 541 PTDFVVSQHYKQFLSWLEVLDEKDRPKIALLSGSLSAGEARLVREGIANREISLILGTHA 600 Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKL--------------------TQKATAPHVL 424 L +S + L L ++DEQHRFGV QR +L + A+ HVL Sbjct: 601 LISNSTNFPALGLAVIDEQHRFGVGQRDRLKTAHASEAVEPDLDDADLERARLASTTHVL 660 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEG 482 LM+ATPIPR+L LT GD+ +S+I E P GR+P+ T ++P + E ++ L G Sbjct: 661 LMSATPIPRSLALTCHGDMSLSQINEIPPGRQPVDTYVLPDDEGGRRRAYELVRAELENG 720 Query: 483 KKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538 +A+++ P I E S+F R+ V F+ + + F A+ HGRM + + F+ Sbjct: 721 GRAFFVYPLINES--SSFEHQRAAVTEFDKVVKEFKDYKCALAHGRMKPDLRNQELKRFR 778 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G C++L+AT V+EVGIDV +A++++IE+AE +GLAQLHQLRGRVGRG S CILL Sbjct: 779 EGECQILVATKVVEVGIDVPEATVMLIESAEGYGLAQLHQLRGRVGRGTRKSFCILL--- 835 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLE 657 + RL +L++T DGF +AEEDLK R G++LG +QSG +F++A+ + +L Sbjct: 836 TCCDTAVERLKLLESTTDGFRLAEEDLKMRGPGDLLGKRQSGTHLEFVLARLGEDNDILL 895 Query: 658 IARKDAKHILTQDPDL 673 AR A+ +L D +L Sbjct: 896 QARAAAEELLETDKNL 911 >gi|183601828|ref|ZP_02963197.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis HN019] gi|219682743|ref|YP_002469126.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis AD011] gi|241190319|ref|YP_002967713.1| RecG-like helicase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195725|ref|YP_002969280.1| RecG-like helicase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218713|gb|EDT89355.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis HN019] gi|219620393|gb|ACL28550.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis AD011] gi|240248711|gb|ACS45651.1| RecG-like helicase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250279|gb|ACS47218.1| RecG-like helicase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793306|gb|ADG32841.1| RecG-like helicase [Bifidobacterium animalis subsp. lactis V9] Length = 790 Score = 321 bits (822), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 200/530 (37%), Positives = 293/530 (55%), Gaps = 46/530 (8%) Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 +P+ + +LL + + A+AF+ IH+P F + A + Y+E Q AL+ Sbjct: 243 AIPDILPGNLLAELNLMHRAQAFSQIHDPDSVGAF---TQAITTMRYEEAFVCQTALIRA 299 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 R +E + + ++ + + +PF TK Q + +I DM Q + M R+LQG+VG Sbjct: 300 RHD-AREHNAYVCSDVQLRDEYIDTLPFVLTKGQREVVDEISHDMCQDHPMQRLLQGEVG 358 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA+ AM AV +G QAV++AP +LA+QHY+ I ++ ++TG M A Sbjct: 359 SGKTVVAVSAMLQAVGSGHQAVLVAPTQVLAEQHYQSISNVFNRAPVL--LLTGGMKLAE 416 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PH 422 RRK L A G+ I++ THA F S Q L L ++DEQHRFGV+QR L K+ PH Sbjct: 417 RRKVLGTAASGEPCIVVATHAAFSKSFQAPNLALAVIDEQHRFGVEQRETLRSKSDVDPH 476 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVL 479 +L+MTATPIPRT +T GD+DIS +TE P GRKPI+TV+IP + E+ ++ + Sbjct: 477 LLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIQTVVIPEENAPLMAEMFWHIRHRI 536 Query: 480 SEGKKAYWICPQIEEKK----------------------------ESNFRS-------VV 504 G++AY +CP+IEE E+N R+ + Sbjct: 537 DAGERAYIVCPRIEESTEDAEGGESGGDARADSDDGMLLSDEDLGETNARAPLHSVHEIS 596 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 ER SL + + GR D KE VM F +G +++ATTVIEVG+DV AS I+ Sbjct: 597 ERLQSLPQFQGVRFCELTGRDDDETKERVMAEFASGQTPVMVATTVIEVGVDVPQASCIV 656 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624 I +A+ +GL+QLHQLRGRVGRG S L+ + + RL V+ ++ DG LIA++D Sbjct: 657 IFDADRYGLSQLHQLRGRVGRGGTHSWAFLVSQAEPNSIAEQRLDVIAHSLDGALIAQKD 716 Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDL 673 L+ R G++LG QSG L + D +++ ARK A+ +L DP L Sbjct: 717 LELRGAGDVLGDTQSGGRSSLKLLRVVKDAAMITDARKRAELLLDADPTL 766 >gi|289178040|gb|ADC85286.1| RecG [Bifidobacterium animalis subsp. lactis BB-12] Length = 825 Score = 321 bits (822), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 200/530 (37%), Positives = 293/530 (55%), Gaps = 46/530 (8%) Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 +P+ + +LL + + A+AF+ IH+P F + A + Y+E Q AL+ Sbjct: 278 AIPDILPGNLLAELNLMHRAQAFSQIHDPDSVGAF---TQAITTMRYEEAFVCQTALIRA 334 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 R +E + + ++ + + +PF TK Q + +I DM Q + M R+LQG+VG Sbjct: 335 RHD-AREHNAYVCSDVQLRDEYIDTLPFVLTKGQREVVDEISHDMCQDHPMQRLLQGEVG 393 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 SGKT+VA+ AM AV +G QAV++AP +LA+QHY+ I ++ ++TG M A Sbjct: 394 SGKTVVAVSAMLQAVGSGHQAVLVAPTQVLAEQHYQSISNVFNRAPVL--LLTGGMKLAE 451 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PH 422 RRK L A G+ I++ THA F S Q L L ++DEQHRFGV+QR L K+ PH Sbjct: 452 RRKVLGTAASGEPCIVVATHAAFSKSFQAPNLALAVIDEQHRFGVEQRETLRSKSDVDPH 511 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVL 479 +L+MTATPIPRT +T GD+DIS +TE P GRKPI+TV+IP + E+ ++ + Sbjct: 512 LLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIQTVVIPEENAPLMAEMFWHIRHRI 571 Query: 480 SEGKKAYWICPQIEEKK----------------------------ESNFRS-------VV 504 G++AY +CP+IEE E+N R+ + Sbjct: 572 DAGERAYIVCPRIEESTEDAEGGESGGDARADSDDGMLLSDEDLGETNARAPLHSVHEIS 631 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 ER SL + + GR D KE VM F +G +++ATTVIEVG+DV AS I+ Sbjct: 632 ERLQSLPQFQGVRFCELTGRDDDETKERVMAEFASGQTPVMVATTVIEVGVDVPQASCIV 691 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624 I +A+ +GL+QLHQLRGRVGRG S L+ + + RL V+ ++ DG LIA++D Sbjct: 692 IFDADRYGLSQLHQLRGRVGRGGTHSWAFLVSQAEPNSIAEQRLDVIAHSLDGALIAQKD 751 Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDL 673 L+ R G++LG QSG L + D +++ ARK A+ +L DP L Sbjct: 752 LELRGAGDVLGDTQSGGRSSLKLLRVVKDAAMITDARKRAELLLDADPTL 801 >gi|257784663|ref|YP_003179880.1| helicase domain-containing protein [Atopobium parvulum DSM 20469] gi|257473170|gb|ACV51289.1| helicase domain protein [Atopobium parvulum DSM 20469] Length = 730 Score = 320 bits (821), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 225/675 (33%), Positives = 363/675 (53%), Gaps = 53/675 (7%) Query: 40 RFIDLLFYHPSSFIDRHYRPKIS--EISEERIVTITGYISQHSSFQLQKRRPYKILLN-- 95 R DLL P ++D +R +I+ +I E+ TITG ++ S + ++ RP +++ Sbjct: 46 RVRDLLLNVPHRYLDFSHRVQIAFAQIGED--ATITGRVA---SVKTKRPRPKMVIVEIE 100 Query: 96 --DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI------KKLKNRIIMVHPHYIFHN 147 D TG +T FF R+ + + + + ++ ++GK+ +++K+ V + Sbjct: 101 VVDDTGALTASFF-RQPWVAEQIHVDD-EVALSGKVLFAYGFRQMKSPFYEVLSTAKSDS 158 Query: 148 SQDV------NFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPS 201 + +V + +I V+ G+S ++I+ AL+ + +W +L+ K S Sbjct: 159 ADEVCSKEIPSKAVILPVHPATEGVSPAWMRRIMSAALADTGSVCDWFPSELVSKHHLMS 218 Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN--VEG 259 ++ A +H P E AR RLA+DELL+ LL R+ + P ++G Sbjct: 219 LSSALREVHFP---SSMEAAEQARRRLAFDELLS-LQLALLTRRNLELAGHKPFEHVIDG 274 Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319 Q ++ +PF+ T Q A+++IL DM+ + M R+L GDVG+GKT VA +A+AA + Sbjct: 275 PKVQALIEALPFTLTDEQNQAVQEILSDMAAPHIMNRLLLGDVGTGKTAVAAVALAAVAD 334 Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379 + QA +MAP +LAQQ+ + I + I+ +ITG + R++ +A G ++ Sbjct: 335 SSAQAAVMAPTSVLAQQYAQKIGPLLSSAGIMWALITGATSEEERQQIELCLADGSLSVV 394 Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439 GT AL + + + +L L +VDEQHRFGV QR L +K +L M+ATPIPRTL L+ Sbjct: 395 FGTTALLSERVVFKQLTLAVVDEQHRFGVDQRTALRKKGQGVDLLAMSATPIPRTLALSL 454 Query: 440 LGDIDISKITEKP-AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI-----E 493 GD+D S+IT++P AG + +P N +D+ + + G +AY +CP I E Sbjct: 455 YGDVDTSRITKRPRAGAGVTTKLCVPEN-LDQAYAAVAEAVQAGHQAYLVCPLIDSNDSE 513 Query: 494 EKKE-------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540 E+ E S R E ++ + FT ++ GR+ + K+ +M+ F+ Sbjct: 514 EELEDIPEAARTNGKLYSATRVYEELSQTVFKDFTCD--LLTGRLPEAQKDQIMEKFRAN 571 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 ++L++TTVIEVG+DV +A+++I+ NA+ FGLA LHQLRGRVGRG+ + L + Sbjct: 572 KTQILVSTTVIEVGVDVPNATVMIVFNADRFGLATLHQLRGRVGRGDFPGTVYLASNAKR 631 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + RL+ L+ T DG +AE DL+ R EGE LG +QSG I+ L+E A Sbjct: 632 GSTARKRLAALEQTSDGAHLAELDLELRHEGETLGYRQSGGTTLKISDLYADADLIEAAH 691 Query: 661 KDAKHILTQDPDLTS 675 KDA I TQDP+LTS Sbjct: 692 KDALAITTQDPNLTS 706 >gi|15827885|ref|NP_302148.1| ATP-dependent DNA helicase RecG [Mycobacterium leprae TN] gi|13432220|sp|O69460|RECG_MYCLE RecName: Full=ATP-dependent DNA helicase recG gi|13093438|emb|CAC30624.1| ATP-dependent DNA helicase [Mycobacterium leprae] Length = 743 Score = 320 bits (820), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 218/665 (32%), Positives = 347/665 (52%), Gaps = 79/665 (11%) Query: 43 DLLFYHPSSFID----RHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL-LNDG 97 DLL ++P S+ R + + E E +TI I++ + ++K K L L G Sbjct: 31 DLLRHYPRSYTKGATVRGAQDERPEAGEH--ITIVDVITEAVTLPMKKDSKKKYLRLTVG 88 Query: 98 TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN----- 152 +G ++ + + + ++ ++G++ + + + HP ++ +S D Sbjct: 89 SGRNKVIATFFNAGYISKGLTKDTRVMLSGEVGFFRGVMQLTHPAFLILDSPDGRNRGSS 148 Query: 153 -------------------------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187 FP+ A L S D++ + + L L + + Sbjct: 149 SLRRIADASQAVSGEVLMSAFERRFFPIYPASTKLQ---SWDIYA-CVRQVLEVLDPVAD 204 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247 + DL K S EA IH D ARERL +DE + Q AL+ R Sbjct: 205 PLPADLRAKHGLVSEDEALRAIHLAESESD---RRRARERLTFDEAVGLQWALVTRRHGE 261 Query: 248 KKEIG--IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML-RILQGDVGS 304 E G P +G +A+ ++R +PF T+ Q ++D+L D R L R+LQG+VGS Sbjct: 262 LSESGPSAPPRSDGLMAE-LMRRLPFELTEGQRE-VRDVLSDGLAATRPLNRLLQGEVGS 319 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVE 353 GKT+VA++AM ++AG Q V++AP +LA QH I+ V Sbjct: 320 GKTIVAVLAMLQMIDAGYQCVLLAPTEVLAAQHLLSIRDVLGPLGMGCQLGGAENATQVA 379 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++TG+M A ++K I GQ I+IGTHAL QD+I+++ L +V+VDEQHRFGV+QR + Sbjct: 380 LLTGSMTMAQKKKVRADIFSGQTGIVIGTHALLQDAIEFHNLGMVVVDEQHRFGVEQRDQ 439 Query: 414 LTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI----N 466 L KA PH+L+MTATPIPRT+ LT GD+++S + E P GR+PI + +I + Sbjct: 440 LRTKARTGIMPHLLVMTATPIPRTVALTVYGDLEMSTLRELPRGRQPITSNVIFVKDKPG 499 Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEE-----KKESNFRSVVERFNSLHEHFTSS---- 517 +D +R+ ++ G++AY + P+I+E K N R E + L+ S Sbjct: 500 WLDRAWQRILEEVAAGRQAYVVAPRIDETEDPQKGGQNSRPS-ETADGLYARLRSGELAN 558 Query: 518 --IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 +A++HGR+S +K++ M +F+ G +L+ T VIEVG+DV +A+I+++ +A+ FG++Q Sbjct: 559 VRLALMHGRLSADEKDAAMMAFRAGEIDVLVCTNVIEVGVDVPNATIMLVMDADRFGISQ 618 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGR+GRG S C+L + RL + T DGF +A+ DLK+R+EG++LG Sbjct: 619 LHQLRGRIGRGTHPSLCLLASWVSPGSPAGRRLCAVAETMDGFALADLDLKERREGDVLG 678 Query: 636 IKQSG 640 QSG Sbjct: 679 RNQSG 683 >gi|320533345|ref|ZP_08034038.1| putative ATP-dependent DNA helicase RecG [Actinomyces sp. oral taxon 171 str. F0337] gi|320134440|gb|EFW26695.1| putative ATP-dependent DNA helicase RecG [Actinomyces sp. oral taxon 171 str. F0337] Length = 752 Score = 320 bits (819), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 230/758 (30%), Positives = 371/758 (48%), Gaps = 96/758 (12%) Query: 19 VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78 VGK+ + L+K ET DLL P + + + E TI + + Sbjct: 5 VGKRTAAQLAK-----QGVET-GADLLRLLPRRYDTWGELTDMRTLVEGEQATIQAQVVR 58 Query: 79 HSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNV--FFEGRKITVTGKIKKLK 133 SS + + R ++ + DG + L+ F +M G + ++GK+ + Sbjct: 59 ASSRRTRSGRVPALMEATVTDGASTMDLVQFGATGQMRARASQLAPGTTVLLSGKVGLHR 118 Query: 134 NRIIMVHPH-YIFHNSQDVN--------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184 R + +P Y+ + P+ +LP+ L V +I+++ L V Sbjct: 119 GRKQLSNPRLYVLDELDEAEREALLARPMPIYPGTEALPSWL-VAKAVRIVLDQLEPGDV 177 Query: 185 ---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 +PE + +++ ++ A+ +H P ++ +W + AR RL ++E L Q+AL Sbjct: 178 ADPIPEELRREMGLVDAY----TAYRWVHRPEDSR--QWKA-ARSRLRHEEALILQVALA 230 Query: 242 LMR---KQFKKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 R + + + P+ E + + +P+ T QE ++I D+++ M R+ Sbjct: 231 QRRAHHEATRTAVAWPVPETEDSLRADLDARLPYDLTAGQERVGREISADLARTVPMQRL 290 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQ 346 LQGDVGSGKTLVAL AM + GGQA ++AP +LA QH+ ++ Sbjct: 291 LQGDVGSGKTLVALRAMLQVIGGGGQAALLAPTEVLAAQHHSSLEAVLGPMARLGMLGGA 350 Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 V ++TG+ P A RR+ L +A G+ I++GTHAL D++Q L LV+VDEQHRF Sbjct: 351 ERATRVHLLTGSTPTAQRRQILADLAAGEPAIVVGTHALLSDTVQIPFLGLVVVDEQHRF 410 Query: 407 GVQQRLKL----------TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 GV QR L T ++ PH+L+MTATPIPRT+ +T GD+ S + E PAGR Sbjct: 411 GVAQRDALRERGGLTDPATGQSHTPHLLVMTATPIPRTIAMTVFGDLATSVLDELPAGRS 470 Query: 457 PIKTVIIPINRI---DEVIERLKVVLSEGKKAYWICPQIEEKKE---------SNFRS-- 502 + T ++P +RI + + R ++ G + Y +CP+IE E + F + Sbjct: 471 AVPTHLVPWSRISWVEGIWRRAAKEVASGGRVYVVCPRIEVDDEPRQVQTEGAAAFETED 530 Query: 503 ---------------------VVERFNSLHEHFTS----SIAIIHGRMSDIDKESVMDSF 537 VE + + + + ++ GRMS K + M F Sbjct: 531 GQGPEPLTDEGSGSHPDRPLAAVEEWRRRLDGEPALEGIGVGVLTGRMSSEGKAASMADF 590 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 +G +L++TTVIEVG+DV +AS+++I +A+ FGL+QLHQLRGRVGRG S C+ + Sbjct: 591 ASGATPVLVSTTVIEVGVDVPEASMMVILDADRFGLSQLHQLRGRVGRGSRPSLCVAVTG 650 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LL 656 + ++ RL +T DGF +AE DL+ R EG++LG QSG L D+ L+ Sbjct: 651 AEVGSTAFHRLKAFASTTDGFALAEADLELRSEGDVLGASQSGRASGLDLLRVTRDARLI 710 Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694 AR+ A+ I+ DP L+ R + I+ L + ++AF Sbjct: 711 ATARRQAERIVAADPQLSEHRALAAAIVERLDEESQAF 748 >gi|227494674|ref|ZP_03924990.1| possible DNA helicase RecG [Actinomyces coleocanis DSM 15436] gi|226831856|gb|EEH64239.1| possible DNA helicase RecG [Actinomyces coleocanis DSM 15436] Length = 697 Score = 319 bits (818), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 231/698 (33%), Positives = 354/698 (50%), Gaps = 52/698 (7%) Query: 2 RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 +P++LN PL G S K+ G N DLL ++P ++ + Sbjct: 3 KPTWLN---TPLERLLG-----SRTAKKLAPLGLENTA---DLLHFYPRRYLHWGKLTPL 51 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLN----DGTGEITLLFFYR---KTEMLK 114 + TI + S QL R + LN DG IT FF K + + Sbjct: 52 YSLHPNEDATILASVQ---SQQLHANRNGGVRLNVELTDGHSTITATFFATHPAKLSVHQ 108 Query: 115 NVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN------FPLIEAVYSLPTGLSV 168 + G + G I + + ++ + HP + +DV P+ A PT + Sbjct: 109 GLLKPGTQHLFAGTISQYRGQLQLTHPSF-EEAGEDVERILTKPIPVYPASSKCPTWFTA 167 Query: 169 DLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERL 228 II++ + + +L + + +K + EA IH P D A+ L Sbjct: 168 KAVG-IILDQMRQEDLLDPFTASEK-EKYGLLDLIEAIEKIHRPNTDTDI---PKAKHTL 222 Query: 229 AYDELLAGQIALLLMRKQFKKEIG--IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQ 286 + E Q A R + IP +I +++ N + T Q++AI ++L Sbjct: 223 KWVEAFELQAAFAQQRHTNAQARAKTIPATAT-EIIPEVIENFGYELTGGQQTAIAEVLA 281 Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346 DMS++ M R+LQ DVG+GKT+VA I M+ V AG QA ++AP +LAQQH +++ Sbjct: 282 DMSREVPMQRLLQADVGAGKTIVAGILMSVVVNAGYQAALLAPTEVLAQQHALNLRRLLP 341 Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 + VE++TG+ R+ E GQ +++GTHAL QDS+ + L LV++DEQHRF Sbjct: 342 ---VPVELLTGSSKAGTRKHIAEITGSGQPAVLVGTHALLQDSLTFKNLALVVIDEQHRF 398 Query: 407 GVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465 GV QR KL + PH+L MTATPIPRT+ +T GD+DI++I E P GR P+KT + Sbjct: 399 GVAQREKLRENQDFVPHLLSMTATPIPRTIAMTVFGDLDITEIRELPKGRIPVKTHTV-- 456 Query: 466 NRIDEV-IERLKVVLSE----GKKAYWICPQI-EEKKESNFRSVVE---RFNSLHEHFTS 516 N + ++RL V E G + + + P+I +E+ +S SV + R +L Sbjct: 457 NECNHAWMQRLWVRSREEIEAGGRVFVVAPRIGDEESDSELASVTQTAQRLRNLPALQGI 516 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 + +HG+++ +K ++ F G LL+ TTVIEVG+D+ DAS+++I +A+ FGL+QL Sbjct: 517 KVGELHGKLTPEEKAQIISDFNTGQLSLLVTTTVIEVGVDIKDASLMVILDAQQFGLSQL 576 Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636 HQLRGRVGRG + ++CI +Y + +S RL +T GF +AE DLK R EG +LG Sbjct: 577 HQLRGRVGRGGQAATCIAVYSAEANPDSIERLEAFASTNSGFELAEYDLKLRCEGNVLGQ 636 Query: 637 KQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDL 673 QSG L A L D+ ++ AR A ++ +DP L Sbjct: 637 SQSGKTTSLKALRVLRDADIIASARDLALAVVAEDPQL 674 >gi|298253296|ref|ZP_06977088.1| RecG-like helicase [Gardnerella vaginalis 5-1] gi|297532691|gb|EFH71577.1| RecG-like helicase [Gardnerella vaginalis 5-1] Length = 750 Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 209/611 (34%), Positives = 323/611 (52%), Gaps = 76/611 (12%) Query: 138 MVHPHYIFH-NSQDVNFPLIEAVYSLPTGLSVD----LFKKIIVEALSRLPVLPEWIEKD 192 M P ++H NS+ + + E + S+ + LS D K S +P+ + Sbjct: 123 MSAPMPVYHANSRISSEHIHETILSILSALSKDSEDSAASKNSAACTSEFLQIPDITPES 182 Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252 +L+K++ + A A IHNP+ +F A + L Y+E Q+A+L R+ K Sbjct: 183 VLKKRNLMTRASAIYSIHNPQSVDEF---YKAVDSLRYEEAFISQVAVLRSREDSKDNQA 239 Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312 N I + + ++PF T Q+ I +I++DM + + M R+LQG+VGSGKT+VAL Sbjct: 240 KSCN-NSLIRNEFVESLPFELTAGQKDVIDEIVRDMREHHPMRRLLQGEVGSGKTVVALA 298 Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY--TQNTQIIVEIITGNMPQAHRRKALER 370 AM AV +G QAV++AP +LA QH E +++ N ++ V ++TG M A RR+AL Sbjct: 299 AMLEAVGSGYQAVLVAPTQVLASQHAENLRQMIARANLKVPVIVVTGGMRLADRRRALAS 358 Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-----------TQKAT 419 +A G+ +I+ THA F + + L LVI+DEQHRFGV+QR L +K+ Sbjct: 359 VASGEPSLIVATHAAFSSTFKPINLALVIIDEQHRFGVEQRDVLLRKMSVDSHNSAEKSF 418 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII---PINRIDEVIERLK 476 PH+L+MTATPIPR+ +T GD+D S +TE P GRKPI+T ++ N + + ++ Sbjct: 419 TPHLLVMTATPIPRSAAMTWFGDLDASYLTELPGGRKPIRTFVVQESDANTMARMFAHIR 478 Query: 477 VVLSEGKKAYWICPQIEE-----------------------------------------K 495 + G++AY +C I++ Sbjct: 479 ARIDAGERAYVVCAHIDDDFNEDSGRDSGSASVSNFGRDFDSDESEGFEDVSQSVQSNQS 538 Query: 496 KESNFRS---------VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 +E+N S +++R ++L + + A + GR D K M+ F G ++L+ Sbjct: 539 EENNADSLRKLHTVNGILKRLSALPQFKGVTFAKLTGRDDDATKRETMERFARGDVQVLV 598 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 ATTVIEVG+DV AS I+I +A+ FGLAQLHQLRGRVGRG S L+ + Sbjct: 599 ATTVIEVGVDVPQASCIVIFDADRFGLAQLHQLRGRVGRGGTNSWAFLVAQTEDGSLAQE 658 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKH 665 RL V++N+ DG +IA++DL+ R G++LG KQSG L + D+ ++ +AR+DA Sbjct: 659 RLQVVENSLDGAVIAKKDLELRNVGDVLGDKQSGGRSSLKILRVVKDAKIIAMAREDALE 718 Query: 666 ILTQDPDLTSV 676 L +D L S+ Sbjct: 719 TLQKDTHLVSL 729 >gi|283457869|ref|YP_003362469.1| RecG-like helicase [Rothia mucilaginosa DY-18] gi|283133884|dbj|BAI64649.1| RecG-like helicase [Rothia mucilaginosa DY-18] Length = 1215 Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 215/678 (31%), Positives = 336/678 (49%), Gaps = 100/678 (14%) Query: 89 PYKILLNDGT---GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF 145 P + N G ++ L FF T + EG + +G++ + + +PHY Sbjct: 520 PAPSMTNPGALIGSQMKLSFFNAWTAARE--IREGETMMFSGRVGIYRGEYTLTNPHYAL 577 Query: 146 HNSQDVNFPLIEA------VYSLPTGLSVDLFKKIIVEALSRLPV--LPEWIEKDLLQKK 197 + + +A VY P LS D + + L ++P+ L + + + + + Sbjct: 578 LSKDASGADVTDAATAPVPVYRAPVKLSTDRISGYMAQLLEKVPLKELEDPVPYTIRRAR 637 Query: 198 SFPSIAEAFNIIHNPRKAKDFE--WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP- 254 PS+ + +H P D E W + A+ ++ Y E Q AL + + P Sbjct: 638 KVPSLEWTYRALHTP----DSEDTWRA-AQAQMRYREAFVLQSALARLHSVRAAHLTQPR 692 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 VEG +A ++L+ +P+ T+ Q+ +I D+S ++ M R+LQGDVGSGKT+VAL AM Sbjct: 693 PAVEGGLADRLLQVLPYELTEGQQKVGAEIAADLSSESPMNRLLQGDVGSGKTVVALRAM 752 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFI----------------------------KKYTQ 346 +AGGQ+ ++AP +LA+QH + + Sbjct: 753 LQVADAGGQSAMLAPTEVLAEQHLRSVLDILGDMAAPEDSDADDSAADSAEGIPAGSGAE 812 Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 ++ V ++T +M +RK L+ +A G A I+IGTHAL D + ++ L LV+VDEQHRF Sbjct: 813 PGRVRVRLLTASMGTRAKRKVLQELADGTAQIVIGTHALLSDEVSFHDLGLVVVDEQHRF 872 Query: 407 GVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465 GV+QR L A PH L+MTATPIPRT+ +T GD+D+S + PAGR+ I T ++P+ Sbjct: 873 GVEQRDSLRGTGGALPHRLVMTATPIPRTVAMTVFGDLDVSVLDTLPAGRQKISTHVVPL 932 Query: 466 NR----IDEVIERLKVVLSEGKKAYWICPQIEEKKES--------------NFRSVVERF 507 + R + + G + Y + P+I E +S + Sbjct: 933 AEKPAWASRLWRRAREEIDAGHQVYVVVPKIGEDGDSLEEGAAFFGASSLNGAGTGAGAG 992 Query: 508 NSLHEHF-----TSS--------------------------IAIIHGRMSDIDKESVMDS 536 NS +F TSS I +HGRM +K +VM + Sbjct: 993 NSAQGYFGQGGSTSSDGKVQLTSVASMYSYLSAEDALVGVRIGTLHGRMDPAEKTAVMTA 1052 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F+ G LLI+TTVIEVG++V +A+++II +A+ FG++ LHQLRGRVGRG +C+L+ Sbjct: 1053 FERGEIDLLISTTVIEVGVNVPNATLMIIMDADRFGISGLHQLRGRVGRGGYAGTCLLVT 1112 Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-L 655 S RL + +T DGF ++ DL QR+EG+ILG QSG L L D+ + Sbjct: 1113 RQEEGGVSRERLDAVASTTDGFELSRIDLAQRREGDILGAAQSGSKSTLRFLRALADADI 1172 Query: 656 LEIARKDAKHILTQDPDL 673 +E AR+DA+ ++ +DP L Sbjct: 1173 IERAREDARSVVEKDPTL 1190 >gi|221230362|ref|YP_002503778.1| ATP-dependent DNA helicase RecG [Mycobacterium leprae Br4923] gi|219933469|emb|CAR71766.1| ATP-dependent DNA helicase [Mycobacterium leprae Br4923] Length = 743 Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 218/665 (32%), Positives = 346/665 (52%), Gaps = 79/665 (11%) Query: 43 DLLFYHPSSFID----RHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL-LNDG 97 DLL ++P S+ R + + E E +TI I++ + ++K K L L G Sbjct: 31 DLLRHYPRSYTKGATVRGAQDERPEAGEH--ITIVDVITEAVTLPMKKDSKKKYLRLTVG 88 Query: 98 TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN----- 152 +G ++ + + + ++ ++G++ + + + HP ++ +S D Sbjct: 89 SGRNKVIATFFNAGYISKGLTKDTRVMLSGEVGFFRGVMQLTHPAFLILDSPDGRNRGSS 148 Query: 153 -------------------------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187 FP+ A L S D++ + + L L + + Sbjct: 149 SLRRIADASQAVSGEVLMSAFERRFFPIYPASTKLQ---SWDIYA-CVRQVLEVLDPVAD 204 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247 + DL K S EA IH D ARERL +DE + Q AL+ R Sbjct: 205 PLPADLRAKHGLVSEDEALRAIHLAESESD---RRRARERLTFDEAVGLQWALVTRRHGE 261 Query: 248 KKEIG--IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML-RILQGDVGS 304 E G P +G +A+ ++R +PF T+ Q ++D+L D R L R+LQG+VGS Sbjct: 262 LSESGPSAPPRSDGLMAE-LMRRLPFELTEGQRE-VRDVLSDGLAATRPLNRLLQGEVGS 319 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVE 353 GKT+VA++AM ++AG Q V++AP +LA QH I+ V Sbjct: 320 GKTIVAVLAMLQMIDAGYQCVLLAPTEVLAAQHLLSIRDVLGPLGMGCQLGGAENATQVA 379 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++TG+M A ++K I GQ I+IGTHAL QD+I+++ L +V+VDEQHRFGV+QR + Sbjct: 380 LLTGSMTMAQKKKVRADIFSGQTGIVIGTHALLQDAIEFHNLGMVVVDEQHRFGVEQRDQ 439 Query: 414 LTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI----N 466 L KA PH+L+MTATPIPRT+ LT GD+++S + E P GR+PI + +I + Sbjct: 440 LRTKARTGIMPHLLVMTATPIPRTVALTVYGDLEMSTLRELPRGRQPITSNVIFVKDKPG 499 Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEE-----KKESNFRSVVERFNSLHEHFTSS---- 517 +D +R+ ++ G++AY + P+I+E K N R E L+ S Sbjct: 500 WLDRAWQRILEEVAAGRQAYVVAPRIDETEDPQKGGQNSRPS-ETAEGLYARLRSGELAN 558 Query: 518 --IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 +A++HGR+S +K++ M +F+ G +L+ T VIEVG+DV +A+I+++ +A+ FG++Q Sbjct: 559 VRLALMHGRLSADEKDAAMMAFRAGEIDVLVCTNVIEVGVDVPNATIMLVMDADRFGISQ 618 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGR+GRG S C+L + RL + T DGF +A+ DLK+R+EG++LG Sbjct: 619 LHQLRGRIGRGTHPSLCLLASWVSPGSPAGRRLCAVAETMDGFALADLDLKERREGDVLG 678 Query: 636 IKQSG 640 QSG Sbjct: 679 RNQSG 683 >gi|297737705|emb|CBI26906.3| unnamed protein product [Vitis vinifera] Length = 988 Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 214/657 (32%), Positives = 332/657 (50%), Gaps = 95/657 (14%) Query: 95 NDGTGEITLLF----FYRKTEMLKNVFF--------EGRKITVTGKIKKLKNRIIMVHPH 142 ND G+ T+ F+R T F EG + V+GK++ ++ + H Sbjct: 328 NDSWGKKTIYLHLKKFFRGTRFTNVPFLRCLQEKHKEGDIVCVSGKVRTMRTK-----DH 382 Query: 143 YIFHNSQDVNFPLIE--------------AVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188 Y ++ N LIE ++Y GL+ + + II AL LPV + Sbjct: 383 Y---EMREYNLDLIEDDQDSSVCPKGRPYSIYPSKGGLNSNFLRDIISRALHSLPVNIDP 439 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248 I KD+++ S+ A+ IH P KD + AR+RL +DE Q+ L Q Sbjct: 440 IPKDIIEDFGLLSLHSAYVGIHQP---KDLKEADLARKRLIFDEFFYLQLGRLF---QIL 493 Query: 249 KEIGIPINVEG-------------------KIAQKILRNIPFSPTKSQESAIKDILQDMS 289 + +G I +G + + L+ +P+S T SQ SA +I+ D+ Sbjct: 494 EGLGTKIEKDGLLDKYRKPELNTVFVEEWSSLTKNFLKALPYSLTSSQLSAASEIIWDLK 553 Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349 + M R+LQGDVG GKT+VA +A + +G QA M P +LA QHYE + +N + Sbjct: 554 RPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLALQHYEQLINLLENME 613 Query: 350 II-----VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404 + ++TG+ P R + + +G ++IGTH+L + +++ L + +VDEQH Sbjct: 614 GAECKPSIALLTGSTPSKQSRMTHKGLQNGDISLVIGTHSLISEKVEFSALRIAVVDEQH 673 Query: 405 RFGVQQRLKLTQK-----------------------ATAPHVLLMTATPIPRTLVLTSLG 441 RFGV QR + K APH+L M+ATPIPRTL L G Sbjct: 674 RFGVIQRGRFNSKLYYNSISSRMAEASSDVLSEGDTRMAPHILAMSATPIPRTLALALYG 733 Query: 442 DIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKE-S 498 D+ +++IT+ P GR P++T I ++V + + L G K Y + P IE+ ++ Sbjct: 734 DMSLTQITDLPPGRTPVETYTIEGCDAGFEDVYQMMLDELEVGGKIYIVYPVIEQSEQLP 793 Query: 499 NFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557 R+ ++ F ++HGRM +K+ + F++G +L++T VIE+G+DV Sbjct: 794 QLRAASTDLETISSRFQGYKCGLLHGRMKSDEKDEALRRFRSGETNILLSTQVIEIGVDV 853 Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617 DAS++++ NAE FG+AQLHQLRGRVGRG S C+L+ + + RL VL+N+ DG Sbjct: 854 PDASMMVVMNAERFGIAQLHQLRGRVGRGVRKSKCLLVSS---TASGLNRLKVLENSSDG 910 Query: 618 FLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 F +A DL R G++LG KQSG +P+F IA+ E+ ++L+ A A IL DL Sbjct: 911 FYLANMDLLLRGPGDLLGKKQSGHLPEFPIARLEIDGNILQEAHLAALKILGTSHDL 967 >gi|51598833|ref|YP_073021.1| ATP-dependent DNA helicase RecG [Borrelia garinii PBi] gi|51573404|gb|AAU07429.1| DNA recombinase [Borrelia garinii PBi] Length = 686 Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 209/623 (33%), Positives = 335/623 (53%), Gaps = 34/623 (5%) Query: 43 DLLFYHPSSFIDRH---YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LND 96 DL+ + P + DR P S++ ++T+ I H F ++ K+ +ND Sbjct: 34 DLIEFFPVKYEDRQNIQTFPDFSKVKSFDMMTVFTVIG-HKKFGDSSKKNLKLTARSIND 92 Query: 97 GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY---IFHNSQDVNF 153 + EI L F R L+NVF +K + K + ++ +F +S + F Sbjct: 93 ESFEI--LLFNRA--FLENVFRIDKKFYIYSKFTYNDYSGLWSCSNFDSEVFSDSPE-RF 147 Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNP 212 I VYSL GL+ + EAL + I K L++K S S++EA IH P Sbjct: 148 KKILPVYSLTEGLTSKKISLYVREALEYFFKFGQTDIPKFLIEKYSLLSLSEALKEIHFP 207 Query: 213 RKAKDFEWTSPARERLAYDELLAGQI------ALLLMRKQFKKEIGIPINVEGKIAQKIL 266 E A++ L Y E+ Q + +L R++ ++ + ++++ Sbjct: 208 ---SSLEMLERAKKTLIYREIFLLQFFSRYRSSKVLFREK--------KHLSRDLLERVV 256 Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 ++PF T+ Q+ ++ +I D+S M R+LQGDVGSGKTLVAL++ +EAG Q Sbjct: 257 LSLPFELTEDQKISVDEIFSDLSSSKPMNRLLQGDVGSGKTLVALLSGLPLIEAGYQVAF 316 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 MAP +LA+QHY+ + + I V ++TG++ + + +ALE I G + +I+GTH++F Sbjct: 317 MAPTDLLARQHYDNLSNILSSFNISVTLLTGSLKKKDKEQALESIKSGVSGLIVGTHSIF 376 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 +S ++ +L VI+DEQH+FGV QR +L K +LLM+ATPIPR+ LT GD+++S Sbjct: 377 YESTEFKRLAYVIIDEQHKFGVVQREELKNKGEGVDILLMSATPIPRSFALTLFGDLEVS 436 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 I P GR PI T + D+V + L+ L +G + Y++ P I ++ + V Sbjct: 437 LIKTLPKGRLPITTYLAKHGNEDKVYDFLRKELLKGHQVYFVYPLISSSEKFELKDVNNM 496 Query: 507 FNSLHEHFTSSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E F+ + ++H ++ KE +M +F + +L+AT+VIEVGID +A+ +++ Sbjct: 497 YLKLKEVFSEYVVDMLHSKLPSDLKEEIMKNFYSKKVDILVATSVIEVGIDCPNATCMVV 556 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625 E+AE FGL+ LHQ+RGR+GR S LLY PL+ RL +K DGF IAEEDL Sbjct: 557 EHAERFGLSTLHQIRGRIGRSNLQSFFFLLYKEPLTSAGKFRLKTIKENLDGFKIAEEDL 616 Query: 626 KQRKEGEILGIKQSGMPKFLIAQ 648 + R G + G++Q+G K I+ Sbjct: 617 RLRGPGNLFGLEQAGYLKLKISN 639 >gi|225424226|ref|XP_002280664.1| PREDICTED: similar to ATP-dependent helicase [Vitis vinifera] Length = 1272 Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 214/657 (32%), Positives = 332/657 (50%), Gaps = 95/657 (14%) Query: 95 NDGTGEITLLF----FYRKTEMLKNVFF--------EGRKITVTGKIKKLKNRIIMVHPH 142 ND G+ T+ F+R T F EG + V+GK++ ++ + H Sbjct: 612 NDSWGKKTIYLHLKKFFRGTRFTNVPFLRCLQEKHKEGDIVCVSGKVRTMRTK-----DH 666 Query: 143 YIFHNSQDVNFPLIE--------------AVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188 Y ++ N LIE ++Y GL+ + + II AL LPV + Sbjct: 667 Y---EMREYNLDLIEDDQDSSVCPKGRPYSIYPSKGGLNSNFLRDIISRALHSLPVNIDP 723 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248 I KD+++ S+ A+ IH P KD + AR+RL +DE Q+ L Q Sbjct: 724 IPKDIIEDFGLLSLHSAYVGIHQP---KDLKEADLARKRLIFDEFFYLQLGRLF---QIL 777 Query: 249 KEIGIPINVEG-------------------KIAQKILRNIPFSPTKSQESAIKDILQDMS 289 + +G I +G + + L+ +P+S T SQ SA +I+ D+ Sbjct: 778 EGLGTKIEKDGLLDKYRKPELNTVFVEEWSSLTKNFLKALPYSLTSSQLSAASEIIWDLK 837 Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349 + M R+LQGDVG GKT+VA +A + +G QA M P +LA QHYE + +N + Sbjct: 838 RPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLALQHYEQLINLLENME 897 Query: 350 II-----VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404 + ++TG+ P R + + +G ++IGTH+L + +++ L + +VDEQH Sbjct: 898 GAECKPSIALLTGSTPSKQSRMTHKGLQNGDISLVIGTHSLISEKVEFSALRIAVVDEQH 957 Query: 405 RFGVQQRLKLTQK-----------------------ATAPHVLLMTATPIPRTLVLTSLG 441 RFGV QR + K APH+L M+ATPIPRTL L G Sbjct: 958 RFGVIQRGRFNSKLYYNSISSRMAEASSDVLSEGDTRMAPHILAMSATPIPRTLALALYG 1017 Query: 442 DIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKE-S 498 D+ +++IT+ P GR P++T I ++V + + L G K Y + P IE+ ++ Sbjct: 1018 DMSLTQITDLPPGRTPVETYTIEGCDAGFEDVYQMMLDELEVGGKIYIVYPVIEQSEQLP 1077 Query: 499 NFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557 R+ ++ F ++HGRM +K+ + F++G +L++T VIE+G+DV Sbjct: 1078 QLRAASTDLETISSRFQGYKCGLLHGRMKSDEKDEALRRFRSGETNILLSTQVIEIGVDV 1137 Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617 DAS++++ NAE FG+AQLHQLRGRVGRG S C+L+ + + RL VL+N+ DG Sbjct: 1138 PDASMMVVMNAERFGIAQLHQLRGRVGRGVRKSKCLLVSS---TASGLNRLKVLENSSDG 1194 Query: 618 FLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 F +A DL R G++LG KQSG +P+F IA+ E+ ++L+ A A IL DL Sbjct: 1195 FYLANMDLLLRGPGDLLGKKQSGHLPEFPIARLEIDGNILQEAHLAALKILGTSHDL 1251 >gi|219685205|ref|ZP_03540025.1| ATP-dependent DNA helicase RecG [Borrelia garinii Far04] gi|219673301|gb|EED30320.1| ATP-dependent DNA helicase RecG [Borrelia garinii Far04] Length = 686 Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 208/623 (33%), Positives = 333/623 (53%), Gaps = 34/623 (5%) Query: 43 DLLFYHPSSFIDRH---YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LND 96 DL+ + P + DR P S++ + T+ + H F ++ K+ +ND Sbjct: 34 DLIEFFPVKYEDRQNIQTFPDCSKVKSFDMTTVFTVVG-HKKFGDSSKKNLKLTARSIND 92 Query: 97 GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY---IFHNSQDVNF 153 EI L F R L+NVF +K + K + ++ +F +S + F Sbjct: 93 EPFEI--LLFNRA--FLENVFRIDKKFYIYSKFTYNDYSGLWSCSNFDSEVFTDSPE-RF 147 Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNP 212 I VYSL GL+ + EAL + I K L++K S S++EA IH P Sbjct: 148 KKILPVYSLTEGLTSKKISLYVREALEYFFKFGQTDIPKFLIEKYSLLSLSEALKEIHFP 207 Query: 213 RKAKDFEWTSPARERLAYDELLAGQI------ALLLMRKQFKKEIGIPINVEGKIAQKIL 266 E A++ L Y E+ Q + +L R++ ++ + ++++ Sbjct: 208 ---SSLEMLEKAKKTLIYREIFLLQFFSRYRSSKVLFREK--------KHLSRDLLERVV 256 Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 ++PF T+ Q+ ++ +I D+S M R+LQGDVGSGKTLVAL++ +EAG Q Sbjct: 257 SSLPFELTEDQKISVDEIFSDLSSSKPMNRLLQGDVGSGKTLVALLSGLPLIEAGYQVAF 316 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 MAP +LA+QHY+ + + I V ++TG++ + + +ALE I +G + +I+GTH++F Sbjct: 317 MAPTDLLARQHYDNLSNILSSFNISVTLLTGSLKKKDKEQALESIKNGVSGLIVGTHSIF 376 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 +S ++ +L VI+DEQH+FGV QR K K +LLM+ATPIPR+ LT GD+++S Sbjct: 377 YESTEFKRLAYVIIDEQHKFGVVQREKFKNKGEGVDILLMSATPIPRSFALTLFGDLEVS 436 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 I P GR PI T + D+V + L+ L +G + Y++ P I ++ + V Sbjct: 437 LIKTLPKGRLPITTYLAKHGNEDKVYDFLRKELLKGHQVYFVYPLISSSEKFELKDVNNM 496 Query: 507 FNSLHEHFTSSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E F+ + ++H ++ KE +M +F + +L+AT+VIEVGID +A+ +++ Sbjct: 497 YLKLKEVFSEYVVDMLHSKLPSDLKEEIMKNFYSKKVDILVATSVIEVGIDCPNATCMVV 556 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625 E+AE FGL+ LHQ+RGR+GR S LLY PL+ RL +K DGF IAEEDL Sbjct: 557 EHAERFGLSTLHQIRGRIGRSNLQSFFFLLYKEPLTSAGKFRLKTIKENLDGFKIAEEDL 616 Query: 626 KQRKEGEILGIKQSGMPKFLIAQ 648 + R G + G++Q+G K I+ Sbjct: 617 RLRGPGNLFGLEQAGYLKLKISN 639 >gi|238063276|ref|ZP_04607985.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora sp. ATCC 39149] gi|237885087|gb|EEP73915.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora sp. ATCC 39149] Length = 735 Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 223/709 (31%), Positives = 366/709 (51%), Gaps = 69/709 (9%) Query: 19 VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78 VG+K + L+ ++ A DL+++ P + +R I + VT+ + + Sbjct: 17 VGEKTAKALAAHLDLHTAG-----DLIYHFPRRYDERGEHTDIRSLDVGEQVTVLAQVRR 71 Query: 79 HSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136 +++RR ++ + D +G F+ + GR GK+ + + + Sbjct: 72 TDVRPMRQRRGKLLEVTVGDDSGGTLTCTFFGNQAWRERELRPGRWGLFAGKVTEFRGKR 131 Query: 137 IMVHPHYIFHNSQDVN---------------FPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 + P Y+ P+ A ++PT + + +++++ + Sbjct: 132 QLNGPEYVLLGEGGDGEAAANEEVEEFAGALIPVYPAAAAVPTWV-IARCVRVVLDTFT- 189 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 P P+ + ++ I A IH P E AR RL +DE A Q+ L+ Sbjct: 190 PPEDPQ--PATIRATRNLIGIGTALREIHRPSSK---EALYRARRRLKWDEAFAVQLTLV 244 Query: 242 LMRKQFKKEIGIPINVEGKIAQKIL----RNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 RK + P A +L +P+ T Q + +I D++ + M R+ Sbjct: 245 -QRKH--RAAAWPARSRPPRAGALLDAFDARLPYELTGGQRAVGAEIAADLATAHPMHRL 301 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI-----------KKYTQ 346 LQG+VGSGKT+VAL AM V+AGGQA ++AP +LA QH+ I + Sbjct: 302 LQGEVGSGKTVVALRAMLQVVDAGGQAALLAPTEVLAAQHHRGILDLLGPLARGGELGAA 361 Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 + VE++TG++ A RR+AL +A G+A I++GTHAL + + + L LV+VDEQHRF Sbjct: 362 DGATSVELVTGSLGAAARRRALAEVAAGRAGIVLGTHALLYEGVDFADLGLVVVDEQHRF 421 Query: 407 GVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465 GV+QR L KA PHVL+MTATPIPRT+ +T GD+++S +++ P GR PI + ++P Sbjct: 422 GVEQRDALRSKADQPPHVLVMTATPIPRTVAMTVYGDLEVSTLSQLPQGRSPIASHVVPA 481 Query: 466 NR----IDEVIERLKVVLSEGKKAYWICPQIEE----------KKESNFR----SVVERF 507 +D RL+ ++ G +AY +CP+I + +++ N R +V E Sbjct: 482 AEKPAFLDRAWRRLREEVAAGHQAYVVCPRIGDPGAGSEEEPPREDDNGRRPPLAVTEVA 541 Query: 508 NSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 L E I I+HGR+ +K++VM +F +G +L+ATTV+EVG++V +A+++I+ Sbjct: 542 PLLAEGPLHGLRIGILHGRLPADEKDAVMRAFADGELDVLVATTVVEVGVNVPNATVMIV 601 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625 +A+ FG++QLHQLRGRVGRG C+L+ ++ RL + +T DGF +AE DL Sbjct: 602 LDADRFGVSQLHQLRGRVGRGSAAGLCLLVTEAAEGSSARERLDAVASTTDGFKLAELDL 661 Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDL 673 +QR+EG++LG QSG L L D+ L+ AR +A ++ +DP+L Sbjct: 662 EQRREGDVLGATQSGRRSHLRLLSLLRDTDLIRDARAEAIALVDEDPEL 710 >gi|308235871|ref|ZP_07666608.1| putative ATP-dependent DNA helicase RecG [Gardnerella vaginalis ATCC 14018] gi|311115033|ref|YP_003986254.1| DNA helicase RecG [Gardnerella vaginalis ATCC 14019] gi|310946527|gb|ADP39231.1| DNA helicase RecG [Gardnerella vaginalis ATCC 14019] Length = 805 Score = 318 bits (815), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 231/752 (30%), Positives = 365/752 (48%), Gaps = 125/752 (16%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLN--DGTGE 100 D L Y+P + R +S+I + V + I + Q+ RR Y++ +N + Sbjct: 34 DALTYYPFRVTNPLKRAHLSQILPGQEVAFSATIQSINIVQMAARRGYRLEVNVAQDAAQ 93 Query: 101 ITLLFFYRKTEMLKNVFFE---GRKITVTGKIKKLKNRIIMVHPHYI------------- 144 +++F + + ++ V G+ + V G + R+ HP + Sbjct: 94 AQIVYFSKNRQYVQWVSGRIAVGQTVVVGGTSGEFNGRLQFTHPQILTVRAKSAESDDSA 153 Query: 145 ------FHNSQDVNFPLIE----------AVYSLPTGLSVD-----------LFKKIIVE 177 NS D + +E +Y + +S + LFK Sbjct: 154 YNTDVRVQNSDDFSVQSVEDGIEKLCAPQPIYHANSRISSEHIHETILGLLRLFKTCDSS 213 Query: 178 ---------ALSRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221 A + +P VLP+ + + + ++ A AF IHNP+ DFE Sbjct: 214 DFNVDTTGVADTNVPDTNVLSDVLPDVLPQFVTNSRNLMHRAAAFESIHNPQNKNDFE-- 271 Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281 A + Y+E QIA+L RK+ + ++ + ++PF T+ Q++ I Sbjct: 272 -NAIHTMRYEEAFISQIAVLQSRKKSGENKAYTCE-NSELRKHFEESLPFELTEGQKNVI 329 Query: 282 KDILQDMSQKNR---------MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332 +I DM +++ M R+LQG+VGSGKT+VA+ AM AV +G QAV++AP + Sbjct: 330 SEITADMQGESQATEESPLKPMRRLLQGEVGSGKTIVAMSAMLQAVGSGHQAVLIAPTQV 389 Query: 333 LAQQHYEFIKKYTQNTQIIVEI--ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 LA QH +++ + I VEI ITG M A RR AL ++A G+ II+ THA F S Sbjct: 390 LASQHATNLQQMIERAGINVEITLITGGMKLASRRSALAKVASGEPAIIVATHAAFSASF 449 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISK 447 + L LVI+DEQHRFGV+QR L +K + PH+L+MTATPIPR+ +T GD+D S Sbjct: 450 KPTNLALVIIDEQHRFGVEQRDTLLRKISGNAVPHLLVMTATPIPRSAAMTWFGDLDASY 509 Query: 448 ITEKPAGRKPIKTVII---PINRIDEVIERLKVVLSEGKKAYWICP-------------- 490 +TE P GRKPI+T +I +++ + ++ + G++AY +C Sbjct: 510 LTELPGGRKPIRTFVINEEDSHKMASMFYHIRSRIDAGERAYVVCARIDSEDSEENNDNT 569 Query: 491 ----------------------------QIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522 QI +++ + +R +L + A + Sbjct: 570 YNTYNNADAIYQENQDSYTLNSQNTQNTQIAQREVHTVLQISKRLQNLPQFKGVEFAQLT 629 Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582 GR SD +K +M F +G ++L++TTVIEVG+DV AS I+I +A+ FGLAQLHQLRGR Sbjct: 630 GRTSDEEKREIMHKFDSGQVQILVSTTVIEVGVDVAKASCIVIFDADRFGLAQLHQLRGR 689 Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642 VGR S L+ + P ++ + RL V++N+ DG +IA++DL+ R G++LG QSG Sbjct: 690 VGRSGTQSWAFLVSNAPNNQLAAERLQVVENSLDGAIIAQKDLELRNVGDVLGDSQSGGK 749 Query: 643 KFLIAQPELHDS-LLEIARKDAKHILTQDPDL 673 L + D+ ++ AR+DA +L DP L Sbjct: 750 SSLKLLRVVKDAKIIAEAREDANTLLEHDPTL 781 >gi|289428698|ref|ZP_06430381.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes J165] gi|289158096|gb|EFD06316.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes J165] gi|313773559|gb|EFS39525.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL074PA1] gi|313807917|gb|EFS46398.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL087PA2] gi|313811612|gb|EFS49326.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL083PA1] gi|313819702|gb|EFS57416.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL046PA2] gi|313825899|gb|EFS63613.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL063PA1] gi|313831354|gb|EFS69068.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL007PA1] gi|313834965|gb|EFS72679.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL056PA1] gi|314962050|gb|EFT06151.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL002PA2] gi|314974229|gb|EFT18325.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL053PA1] gi|314976660|gb|EFT20755.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL045PA1] gi|314978855|gb|EFT22949.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL072PA2] gi|314984468|gb|EFT28560.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL005PA1] gi|314986486|gb|EFT30578.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL005PA2] gi|314990845|gb|EFT34936.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL005PA3] gi|315081290|gb|EFT53266.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL078PA1] gi|315087173|gb|EFT59149.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL002PA3] gi|315089344|gb|EFT61320.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL072PA1] gi|327328369|gb|EGE70131.1| ATP-dependent DNA helicase RecG [Propionibacterium acnes HL096PA2] gi|327444153|gb|EGE90807.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL043PA2] gi|327444966|gb|EGE91620.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL043PA1] gi|327446450|gb|EGE93104.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL013PA2] gi|328752205|gb|EGF65821.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL020PA1] gi|328760122|gb|EGF73701.1| ATP-dependent DNA helicase RecG [Propionibacterium acnes HL099PA1] gi|332675894|gb|AEE72710.1| ATP-dependent DNA helicase RecG [Propionibacterium acnes 266] Length = 749 Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 206/640 (32%), Positives = 328/640 (51%), Gaps = 60/640 (9%) Query: 85 QKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139 ++RRP +++L+DG + + FF + + +F GK+ + + +V Sbjct: 95 RERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 154 Query: 140 HPHYIF--HNSQDVN-----------------FPLIEAVYSLPTGLSVDLFKKIIVEALS 180 HP ++ N + V L + L T + + +++E+ Sbjct: 155 HPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYQQTSKLRT-WEIASVESMLLESTP 213 Query: 181 RL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 L LPEW L Q+ PS+ EA++ IH P + + + ERL ++E +A Q+ Sbjct: 214 ELEDTLPEW----LRQEADLPSLWEAYHAIHYPHSVAEADRGA---ERLIWEEAIATQVT 266 Query: 240 LLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 + + R+ ++ + + +G + +PF+PT Q+ + I D+S M R+L Sbjct: 267 MAVRRRSAERHDAPVCSRRDGGLLAAFEDRLPFTPTVGQDEVSRVIDADLSADRPMHRLL 326 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN----------- 347 QG+VGSGKT VAL AM V+AG QAV++AP +LAQQHY I + Sbjct: 327 QGEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGGGLDAPE 386 Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407 V ++TG+M A R AL IA G A II+GTH+L + Y + LV+VDEQHRFG Sbjct: 387 ISTGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFG 446 Query: 408 VQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI- 465 V+QR LT A PH L++TATPIPRT+ +T GD+++S + E P GR ++T ++ + Sbjct: 447 VEQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLP 506 Query: 466 ---NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS-- 517 + + +R++ G + + +CP+I + R L + Sbjct: 507 AHGSWLTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGRRPAAAVEELAPQLATGPL 566 Query: 518 ----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 + +H R+ +K+ VMD F G ++LI+TTVIEVG+DV +A++++I +A+ FG+ Sbjct: 567 AGLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGV 626 Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633 +QLHQLRGR+GRG C+L+ P + RL + + DGF +AE DL QR EG + Sbjct: 627 SQLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNV 686 Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKD-AKHILTQDPD 672 LG Q+G L L + + A KD A+ + + PD Sbjct: 687 LGSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVAEAPD 726 >gi|327329764|gb|EGE71520.1| ATP-dependent DNA helicase RecG [Propionibacterium acnes HL096PA3] Length = 749 Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 206/640 (32%), Positives = 328/640 (51%), Gaps = 60/640 (9%) Query: 85 QKRRPYK---ILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139 ++RRP + ++L+DG + + FF + + +F GK+ + + +V Sbjct: 95 RERRPSQRLEVMLSDGKARLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 154 Query: 140 HPHYIF--HNSQDVN-----------------FPLIEAVYSLPTGLSVDLFKKIIVEALS 180 HP ++ N + V L + L T + + +++E+ Sbjct: 155 HPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYQQTSKLRT-WEIASVESMLLESTP 213 Query: 181 RL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 L LPEW L Q+ PS+ EA++ IH P + + + ERL ++E +A Q+ Sbjct: 214 ELEDTLPEW----LRQEADLPSLWEAYHAIHYPHSVAEADRGA---ERLIWEEAIATQVT 266 Query: 240 LLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 + + R+ ++ + + +G + +PF+PT Q+ + I D+S M R+L Sbjct: 267 MAVRRRSAERHDAPVCSRRDGGLLAAFEDRLPFTPTVGQDEVSRVIDADLSADRPMHRLL 326 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN----------- 347 QG+VGSGKT VAL AM V+AG QAV++AP +LAQQHY I + Sbjct: 327 QGEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGGGLDAPE 386 Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407 V ++TG+M A R AL IA G A II+GTH+L + Y + LV+VDEQHRFG Sbjct: 387 ISTGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFG 446 Query: 408 VQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI- 465 V+QR LT A PH L++TATPIPRT+ +T GD+++S + E P GR ++T ++ + Sbjct: 447 VEQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLP 506 Query: 466 ---NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS-- 517 + + +R++ G + + +CP+I + R L + Sbjct: 507 AHGSWLTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGRRPAAAVEELAPQLATGPL 566 Query: 518 ----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 + +H R+ +K+ VMD F G ++LI+TTVIEVG+DV +A++++I +A+ FG+ Sbjct: 567 AGLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGV 626 Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633 +QLHQLRGR+GRG C+L+ P + RL + + DGF +AE DL QR EG + Sbjct: 627 SQLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNV 686 Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKD-AKHILTQDPD 672 LG Q+G L L + + A KD A+ + + PD Sbjct: 687 LGSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVAEAPD 726 >gi|315095369|gb|EFT67345.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL038PA1] Length = 749 Score = 318 bits (814), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 206/640 (32%), Positives = 328/640 (51%), Gaps = 60/640 (9%) Query: 85 QKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139 ++RRP +++L+DG + + FF + + +F GK+ + + +V Sbjct: 95 RERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 154 Query: 140 HPHYIF--HNSQDVN-----------------FPLIEAVYSLPTGLSVDLFKKIIVEALS 180 HP ++ N + V L + L T + + +++E+ Sbjct: 155 HPDFVMIDRNGKVVAGREEGKVMAAQGQRHGLLGLYQQTSKLRT-WEIASVESMLLESTP 213 Query: 181 RL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 L LPEW L Q+ PS+ EA++ IH P + + + ERL ++E +A Q+ Sbjct: 214 ELEDTLPEW----LRQEADLPSLWEAYHAIHYPHSVAEADRGA---ERLIWEEAIATQVT 266 Query: 240 LLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 + + R+ ++ + + +G + +PF+PT Q+ + I D+S M R+L Sbjct: 267 MAVRRRSAERHDAPVCSRRDGGLLAAFEDRLPFTPTVGQDEVSRVIDADLSADRPMHRLL 326 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN----------- 347 QG+VGSGKT VAL AM V+AG QAV++AP +LAQQHY I + Sbjct: 327 QGEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGGGLDAPE 386 Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407 V ++TG+M A R AL IA G A II+GTH+L + Y + LV+VDEQHRFG Sbjct: 387 ISTGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFG 446 Query: 408 VQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI- 465 V+QR LT A PH L++TATPIPRT+ +T GD+++S + E P GR ++T ++ + Sbjct: 447 VEQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLP 506 Query: 466 ---NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS-- 517 + + +R++ G + + +CP+I + R L + Sbjct: 507 AHGSWLTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGRRPAAAVEELAPQLATGPL 566 Query: 518 ----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 + +H R+ +K+ VMD F G ++LI+TTVIEVG+DV +A++++I +A+ FG+ Sbjct: 567 AGLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGV 626 Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633 +QLHQLRGR+GRG C+L+ P + RL + + DGF +AE DL QR EG + Sbjct: 627 SQLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNV 686 Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKD-AKHILTQDPD 672 LG Q+G L L + + A KD A+ + + PD Sbjct: 687 LGSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVAEAPD 726 >gi|313822191|gb|EFS59905.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL036PA1] gi|313823574|gb|EFS61288.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL036PA2] gi|314924585|gb|EFS88416.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL036PA3] Length = 749 Score = 317 bits (813), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 206/640 (32%), Positives = 328/640 (51%), Gaps = 60/640 (9%) Query: 85 QKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139 ++RRP +++L+DG + + FF + + +F GK+ + + +V Sbjct: 95 RERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 154 Query: 140 HPHYIF--HNSQDVN-----------------FPLIEAVYSLPTGLSVDLFKKIIVEALS 180 HP ++ N + V L + L T + + +++E+ Sbjct: 155 HPDFVMIDRNGKIVAGREEGKVMAAQVQRHGLLGLYQQTSKLRT-WEIASVESMLLESTP 213 Query: 181 RL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 L LPEW L Q+ PS+ EA++ IH P + + + ERL ++E +A Q+ Sbjct: 214 ELEDTLPEW----LRQEADLPSLWEAYHAIHYPHSVAEADRGA---ERLIWEEAIATQVT 266 Query: 240 LLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 + + R+ ++ + + +G + +PF+PT Q+ + I D+S M R+L Sbjct: 267 MAVRRRSAERHDAPVCSRRDGGLLAAFEDRLPFTPTVGQDEVSRVIDADLSADRPMHRLL 326 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN----------- 347 QG+VGSGKT VAL AM V+AG QAV++AP +LAQQHY I + Sbjct: 327 QGEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGGGLDAPE 386 Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407 V ++TG+M A R AL IA G A II+GTH+L + Y + LV+VDEQHRFG Sbjct: 387 ISTGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFG 446 Query: 408 VQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI- 465 V+QR LT A PH L++TATPIPRT+ +T GD+++S + E P GR ++T ++ + Sbjct: 447 VEQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLP 506 Query: 466 ---NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS-- 517 + + +R++ G + + +CP+I + R L + Sbjct: 507 AHGSWLTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGRRPAAAVEELAPQLATGPL 566 Query: 518 ----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 + +H R+ +K+ VMD F G ++LI+TTVIEVG+DV +A++++I +A+ FG+ Sbjct: 567 AGLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGV 626 Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633 +QLHQLRGR+GRG C+L+ P + RL + + DGF +AE DL QR EG + Sbjct: 627 SQLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNV 686 Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKD-AKHILTQDPD 672 LG Q+G L L + + A KD A+ + + PD Sbjct: 687 LGSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVAEAPD 726 >gi|219684327|ref|ZP_03539271.1| ATP-dependent DNA helicase RecG [Borrelia garinii PBr] gi|219672316|gb|EED29369.1| ATP-dependent DNA helicase RecG [Borrelia garinii PBr] Length = 686 Score = 317 bits (813), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 208/623 (33%), Positives = 334/623 (53%), Gaps = 34/623 (5%) Query: 43 DLLFYHPSSFIDRH---YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LND 96 DL+ + P + DR P S++ ++T+ + H F ++ K+ +ND Sbjct: 34 DLIEFFPVKYEDRQNIQTFPDFSKVKSFDMMTVFTVVG-HKKFGDSSKKNLKLTARSIND 92 Query: 97 GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY---IFHNSQDVNF 153 EI L F R L+NVF +K + K + ++ +F +S + F Sbjct: 93 EPFEI--LLFNRA--FLENVFRIDKKFYIYSKFTYNDYSGLWSCSNFDSEVFTDSPE-RF 147 Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNP 212 I VYSL GL+ + EAL + I K L++K S S++EA IH P Sbjct: 148 KKILPVYSLTEGLTSKKISLYVREALEYFFKFGQTDIPKFLIEKYSLLSLSEALKEIHFP 207 Query: 213 RKAKDFEWTSPARERLAYDELLAGQI------ALLLMRKQFKKEIGIPINVEGKIAQKIL 266 E A++ L Y E+ Q + +L R++ ++ + ++++ Sbjct: 208 ---SSLEMLEKAKKTLIYREIFLLQFFSRYRSSKVLFREK--------KHLSRDLLERVV 256 Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 ++PF T+ Q+ ++ +I D+S M R+LQGDVGSGKTLVAL++ +EAG Q Sbjct: 257 SSLPFELTEDQKISVDEIFSDLSSSKPMNRLLQGDVGSGKTLVALLSGLPLIEAGYQVAF 316 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 MAP +LA+QHY+ + + I V ++TG++ + + +ALE I G + +I+GTH++F Sbjct: 317 MAPTDLLARQHYDNLSNILSSFNIPVTLLTGSLKKKDKEQALESIKSGVSGLIVGTHSIF 376 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 +S ++ +L VI+DEQH+FGV QR +L K +LLM+ATPIPR+ LT GD+++S Sbjct: 377 YESTEFKRLAYVIIDEQHKFGVVQREELKNKGEGVDILLMSATPIPRSFALTLFGDLEVS 436 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 I P GR PI T + D+V + L+ L +G + Y++ P I ++ + V Sbjct: 437 LIKTLPKGRLPITTYLAKHGNEDKVYDFLRKELLKGHQVYFVYPLISSSEKFELKDVNNM 496 Query: 507 FNSLHEHFTSSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E F+ + ++H ++ KE +M +F + +L+AT+VIEVGID +A+ +++ Sbjct: 497 YLKLKEVFSEYVVDMLHSKLPSDLKEEIMKNFYSKKVDILVATSVIEVGIDCPNATCMVV 556 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625 E+AE FGL+ LHQ+RGR+GR S LLY PL+ RL +K DGF IAEEDL Sbjct: 557 EHAERFGLSTLHQIRGRIGRSNLQSFFFLLYKEPLTSAGKFRLKTIKENLDGFKIAEEDL 616 Query: 626 KQRKEGEILGIKQSGMPKFLIAQ 648 + R G + G++Q+G K I+ Sbjct: 617 RLRGPGNLFGLEQAGYLKLKISN 639 >gi|255326571|ref|ZP_05367648.1| ATP-dependent DNA helicase RecG [Rothia mucilaginosa ATCC 25296] gi|255296311|gb|EET75651.1| ATP-dependent DNA helicase RecG [Rothia mucilaginosa ATCC 25296] Length = 1171 Score = 317 bits (813), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 210/668 (31%), Positives = 332/668 (49%), Gaps = 88/668 (13%) Query: 89 PYKILLNDGT---GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF 145 P + N G ++ L FF T + EG + +G++ + + +PHY Sbjct: 484 PAPSMTNPGALIGSQMKLSFFNAWTAARE--IREGETMMFSGRVGIYRGEYTLTNPHYAL 541 Query: 146 HNSQDVNFPLIEA------VYSLPTGLSVDLFKKIIVEALSRLPV--LPEWIEKDLLQKK 197 + + +A VY P L D + + L ++P+ L + + + + + Sbjct: 542 LSKDASGADVTDAATAPVPVYRAPVKLPTDRISGYMAQLLEKVPLKELEDPVPYTIRRAR 601 Query: 198 SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-IN 256 PS+ + +H P + W + A+ ++ Y E Q AL + + P Sbjct: 602 KVPSLEWTYRALHTPDS--EDTWRA-AQAQMRYREAFVLQSALARLHSVRAAHLTQPRPA 658 Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316 VE +A ++L+ +P+ T+ Q+ +I D+S ++ M R+LQGDVGSGKT+VAL AM Sbjct: 659 VESGLADRLLQVLPYELTEGQQKVGAEIAADLSSESPMNRLLQGDVGSGKTVVALRAMLQ 718 Query: 317 AVEAGGQAVIMAPIGILAQQHYEFI------------------------KKYTQNTQIIV 352 +AGGQ+ ++AP +LA+QH + + ++ V Sbjct: 719 VADAGGQSAMLAPTEVLAEQHLRSVLDILGDMAAPEDSDADDSAEGIPSGSGEEPDRVRV 778 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 ++T +M +RK L+ +A G A I+IGTHAL D + ++ L LV+VDEQHRFGV+QR Sbjct: 779 RLLTASMGTRAKRKVLQELADGTAQIVIGTHALLSDEVSFHDLGLVVVDEQHRFGVEQRD 838 Query: 413 KLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---- 467 L A PH L+MTATPIPRT+ +T GD+D+S + PAGR+ I T ++P+ Sbjct: 839 GLRGTDGALPHRLVMTATPIPRTVAMTVFGDLDVSVLDTLPAGRQKISTHVVPLAEKPAW 898 Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEHFTSS 517 + R + + G + Y + P+I E +S + + NS +F S Sbjct: 899 ASRLWRRAREEIDAGHQVYVVVPKIGEDGDSLEEGAAFFGASSLNGAGAGNSAQGYFGQS 958 Query: 518 -------------------------------IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 I +HGRM +K SVM +F+ G LLI Sbjct: 959 GSASSDGKVQLTSVASMYSYLSAEDALVGVRIGTLHGRMDPAEKTSVMTAFERGEIDLLI 1018 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 +TTVIEVG++V +A+++II +A+ FG++ LHQLRGRVGRG +C+L+ S Sbjct: 1019 STTVIEVGVNVPNATLMIIMDADRFGISGLHQLRGRVGRGGYAGTCLLVTRQEEGGVSRE 1078 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKH 665 RL + +T DGF ++ DL QR+EG+ILG QSG L L D+ ++E AR+DA+ Sbjct: 1079 RLDAVASTTDGFELSRIDLAQRREGDILGAAQSGSKSTLRFLRALADADIIERAREDARS 1138 Query: 666 ILTQDPDL 673 ++ +DP L Sbjct: 1139 VVEKDPTL 1146 >gi|295131015|ref|YP_003581678.1| ATP-dependent DNA helicase RecG [Propionibacterium acnes SK137] gi|291375406|gb|ADD99260.1| ATP-dependent DNA helicase RecG [Propionibacterium acnes SK137] Length = 739 Score = 317 bits (812), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 206/640 (32%), Positives = 328/640 (51%), Gaps = 60/640 (9%) Query: 85 QKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139 ++RRP +++L+DG + + FF + + +F GK+ + + +V Sbjct: 85 RERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 144 Query: 140 HPHYIF--HNSQDVN-----------------FPLIEAVYSLPTGLSVDLFKKIIVEALS 180 HP ++ N + V L + L T + + +++E+ Sbjct: 145 HPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYQQTSKLRT-WEIASVESMLLESTP 203 Query: 181 RL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 L LPEW L Q+ PS+ EA++ IH P + + + ERL ++E +A Q+ Sbjct: 204 ELEDTLPEW----LRQEADLPSLWEAYHAIHYPHSVAEADRGA---ERLIWEEAIATQVT 256 Query: 240 LLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 + + R+ ++ + + +G + +PF+PT Q+ + I D+S M R+L Sbjct: 257 MAVRRRSAERHDAPVCSRRDGGLLAAFEDRLPFTPTVGQDEVSRVIDADLSADRPMHRLL 316 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN----------- 347 QG+VGSGKT VAL AM V+AG QAV++AP +LAQQHY I + Sbjct: 317 QGEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGGGLDAPE 376 Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407 V ++TG+M A R AL IA G A II+GTH+L + Y + LV+VDEQHRFG Sbjct: 377 ISTGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFG 436 Query: 408 VQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI- 465 V+QR LT A PH L++TATPIPRT+ +T GD+++S + E P GR ++T ++ + Sbjct: 437 VEQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLP 496 Query: 466 ---NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS-- 517 + + +R++ G + + +CP+I + R L + Sbjct: 497 AHGSWLTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGRRPAAAVEELAPQLATGPL 556 Query: 518 ----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 + +H R+ +K+ VMD F G ++LI+TTVIEVG+DV +A++++I +A+ FG+ Sbjct: 557 AGLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGV 616 Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633 +QLHQLRGR+GRG C+L+ P + RL + + DGF +AE DL QR EG + Sbjct: 617 SQLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNV 676 Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKD-AKHILTQDPD 672 LG Q+G L L + + A KD A+ + + PD Sbjct: 677 LGSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVAEAPD 716 >gi|297242906|ref|ZP_06926844.1| RecG-like helicase [Gardnerella vaginalis AMD] gi|296889117|gb|EFH27851.1| RecG-like helicase [Gardnerella vaginalis AMD] Length = 812 Score = 317 bits (812), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 197/559 (35%), Positives = 300/559 (53%), Gaps = 71/559 (12%) Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 +P + +L+K++ + A A IHNP+ +F A + L Y+E Q+A+L R Sbjct: 237 IPNITPESVLKKRNLMTRASAIYSIHNPQSVDEF---YKAVDSLRYEEAFISQVAVLRSR 293 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 + K N I + + ++PF T Q+ I +I++DM +++ M R+LQG+VGS Sbjct: 294 EDSKDNQAKSCN-NSLIRNEFVESLPFELTAGQKDVIDEIVRDMRERHPMRRLLQGEVGS 352 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT--QNTQIIVEIITGNMPQA 362 GKT+VAL AM AV +G QAV++AP +LA QH E +++ N ++ V ++TG M A Sbjct: 353 GKTVVALAAMLEAVGSGYQAVLVAPTQVLASQHAENLRQMIARANLKVPVIVVTGGMRLA 412 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-------- 414 RR+AL +A G+ +I+ THA F + + L LVI+DEQHRFGV+QR L Sbjct: 413 DRRRALASVASGEPSLIVATHAAFSSTFKPTNLALVIIDEQHRFGVEQRDVLLRKMSVDP 472 Query: 415 ---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII---PINRI 468 +K+ PH+L+MTATPIPR+ +T GD+D S +TE P GRKPI+T ++ N + Sbjct: 473 HDSAEKSFTPHLLVMTATPIPRSAAMTWFGDLDASYLTELPGGRKPIRTFVVQESDANTM 532 Query: 469 DEVIERLKVVLSEGKKAYWICPQI------------------------------------ 492 + ++ + G++AY +C I Sbjct: 533 ARMFAHIRARIDAGERAYVVCAHIDDDFNEDSGRDSASGSASGSARDFDSDESEGFEDVS 592 Query: 493 --------EEKKESNFR------SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 EE + R +++R ++L + + A + GR D K M+ F Sbjct: 593 QSVQSNQSEENSADSLRKLHTVNGILKRLSALPQFKGVTFAKLTGRDDDATKRETMEHFA 652 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G ++L+ATTVIEVG+DV AS I+I +A+ FGLAQLHQLRGRVGRG S L+ Sbjct: 653 RGDVQVLVATTVIEVGVDVPQASCIVIFDADRFGLAQLHQLRGRVGRGGTNSWAFLVAQT 712 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLE 657 + RL V++N+ DG +IA++DL+ R G++LG KQSG L + D+ ++ Sbjct: 713 EDGSLAQERLQVVENSLDGAVIAKKDLELRNVGDVLGDKQSGGRSSLKILRVVKDAKIIA 772 Query: 658 IARKDAKHILTQDPDLTSV 676 +AR+DA L +D L S+ Sbjct: 773 MAREDALETLQKDAHLVSL 791 >gi|327334282|gb|EGE75996.1| ATP-dependent DNA helicase RecG [Propionibacterium acnes HL097PA1] Length = 749 Score = 317 bits (812), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 204/639 (31%), Positives = 330/639 (51%), Gaps = 58/639 (9%) Query: 85 QKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139 ++RRP +++L+DG + + FF + + +F GK+ + + +V Sbjct: 95 RERRPRQRLEVMLSDGKACLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 154 Query: 140 HPHYIFHN---------------SQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSR 181 HP ++ + + V + +Y + L + + +++E+ Sbjct: 155 HPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYPQTSKLRTWEIASVESMLLESTPE 214 Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 L LPEW L Q+ PS+ EA++ IH P + + + ERL ++E +A Q+ + Sbjct: 215 LEDTLPEW----LRQEADLPSLWEAYHAIHYPHSVAEADRGA---ERLIWEEAIATQVTM 267 Query: 241 LLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 + R+ ++ + + +G++ +PF+PT Q+ + I D+S M R+LQ Sbjct: 268 AVRRRSAERHDAPVCSRRDGELLAAFEDRLPFTPTVGQDEVSRVIDADLSADRPMHRLLQ 327 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-----------T 348 G+VGSGKT VAL AM V+AG QAV++AP +LAQQHY I + Sbjct: 328 GEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGGGLDAPEI 387 Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408 V ++TG+M A R AL IA G A II+GTH+L + Y + LV+VDEQHRFGV Sbjct: 388 STGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFGV 447 Query: 409 QQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-- 465 +QR LT A PH L++TATPIPRT+ +T GD+++S + E P GR ++T ++ + Sbjct: 448 EQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLPA 507 Query: 466 --NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS--- 517 + + +R++ G + + +CP+I + R L + Sbjct: 508 HGSWLTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGRRPAAAVEELAPQLATGPLA 567 Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + +H R+ +K+ VMD F G ++LI+TTVIEVG+DV +A++++I +A+ FG++ Sbjct: 568 GLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGVS 627 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGR+GRG C+L+ P + RL + + DGF +AE DL QR EG +L Sbjct: 628 QLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNVL 687 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKD-AKHILTQDPD 672 G Q+G L L + + A KD A+ + + PD Sbjct: 688 GSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVAEAPD 726 >gi|283782816|ref|YP_003373570.1| putative ATP-dependent DNA helicase RecG [Gardnerella vaginalis 409-05] gi|283441748|gb|ADB14214.1| putative ATP-dependent DNA helicase RecG [Gardnerella vaginalis 409-05] Length = 792 Score = 317 bits (811), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 201/579 (34%), Positives = 303/579 (52%), Gaps = 77/579 (13%) Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 +P + +L+K++ + A A IHNP+ +F A + L Y+E Q+A+L R Sbjct: 221 IPNITPESVLKKRNLMTRASAIYSIHNPQSVDEF---YKAVDSLRYEEAFISQVAVLRSR 277 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 + K N I + + ++PF T Q+ I +I++DM + + M R+LQG+VGS Sbjct: 278 EDSKDNQAKSCN-NSLIRNEFVESLPFELTAGQKDVIDEIVRDMREHHPMRRLLQGEVGS 336 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT--QNTQIIVEIITGNMPQA 362 GKT+VAL AM AV +G QAV++AP +LA QH E +++ N ++ V ++TG M A Sbjct: 337 GKTVVALAAMLEAVGSGYQAVLVAPTQVLASQHAENLRQMITRANLKVPVIVVTGGMRLA 396 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-------- 414 RR+AL +A G+ +I+ THA F + + L LVI+DEQHRFGV+QR L Sbjct: 397 DRRRALASVASGEPSLIVATHAAFSSTFKPTNLALVIIDEQHRFGVEQRDVLLRKMSVDS 456 Query: 415 ---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII---PINRI 468 +K+ PH+L+MTATPIPR+ +T GD+D S +TE P GRKPI+T ++ N + Sbjct: 457 HNSAEKSFTPHLLVMTATPIPRSAAMTWFGDLDASYLTELPGGRKPIRTFVVQESDANTM 516 Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEK--------KESNF-------------------- 500 + ++ + G++AY +C I++ SNF Sbjct: 517 ARMFAHIRARIDAGERAYVVCAHIDDDFNEDSGSASASNFGRDFDSDESEAFEDVSQSVQ 576 Query: 501 ------------------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542 +++R ++L + + A + GR D K M+ F G Sbjct: 577 SNQSEENNADSLRKLHTVNGILKRLSALPQFKGVTFAKLTGRDDDATKRETMERFARGDV 636 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 ++L+ATTVIEVG+DV AS I+I +A+ FGLAQLHQLRGRVGRG S L+ Sbjct: 637 QVLVATTVIEVGVDVPQASCIVIFDADRFGLAQLHQLRGRVGRGGTNSWAFLVAQTEDGS 696 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARK 661 + RL V++N+ DG +IA++DL+ R G++LG KQSG L + D ++ +AR+ Sbjct: 697 LAQERLQVVENSLDGAVIAKKDLELRNVGDVLGDKQSGGRSSLKILRVVKDVKIIAMARE 756 Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 DA L +D L +L Y F R G Sbjct: 757 DALETLQKDTHL----------VLLPYLAGAVLDFTRGG 785 >gi|50842945|ref|YP_056172.1| ATP-dependent DNA helicase RecG [Propionibacterium acnes KPA171202] gi|50840547|gb|AAT83214.1| ATP-dependent DNA helicase RecG [Propionibacterium acnes KPA171202] gi|315106713|gb|EFT78689.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL030PA1] Length = 749 Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 204/639 (31%), Positives = 329/639 (51%), Gaps = 58/639 (9%) Query: 85 QKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139 ++RRP +++L+DG + + FF + + +F GK+ + + +V Sbjct: 95 RERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 154 Query: 140 HPHYIFHN---------------SQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSR 181 HP ++ + + V + +Y + L + + +++E+ Sbjct: 155 HPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYPQTSKLRTWEIASVESMLLESTPE 214 Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 L LPEW L Q+ PS+ EA++ IH P + + + ERL ++E +A Q+ + Sbjct: 215 LEDTLPEW----LRQEADLPSLWEAYHAIHYPHSVAEADRGA---ERLIWEEAIATQVTM 267 Query: 241 LLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 + R+ ++ + + +G + +PF+PT Q+ + I D+S M R+LQ Sbjct: 268 AVRRRSAERHDAPVCSRRDGGLLVAFEDRLPFTPTVGQDEVSRVIDADLSADRPMHRLLQ 327 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-----------T 348 G+VGSGKT VAL AM V+AG QAV++AP +LAQQHY I + Sbjct: 328 GEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGEGLDAPEI 387 Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408 V ++TG+M A R AL IA G A II+GTH+L + Y + LV+VDEQHRFGV Sbjct: 388 STGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFGV 447 Query: 409 QQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-- 465 +QR LT A PH L++TATPIPRT+ +T GD+++S + E P GR ++T ++ + Sbjct: 448 EQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLPA 507 Query: 466 --NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS--- 517 + + +R++ G + + +CP+I + R L + Sbjct: 508 HGSWLTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGRPPAAAVEELAPQLATGPLA 567 Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + +H R+ +K+ VMD F G ++LI+TTVIEVG+DV +A++++I +A+ FG++ Sbjct: 568 GLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGVS 627 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGR+GRG C+L+ P + RL + + DGF +AE DL QR EG +L Sbjct: 628 QLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNVL 687 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKD-AKHILTQDPD 672 G Q+G L L + + A KD A+ + + PD Sbjct: 688 GSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVAEAPD 726 >gi|332670950|ref|YP_004453958.1| DEAD/DEAH box helicase domain-containing protein [Cellulomonas fimi ATCC 484] gi|332339988|gb|AEE46571.1| DEAD/DEAH box helicase domain protein [Cellulomonas fimi ATCC 484] Length = 750 Score = 315 bits (808), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 223/709 (31%), Positives = 346/709 (48%), Gaps = 82/709 (11%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYK--ILLNDGTGE 100 DLL ++P + D I+ + VT+ + Q + + + + + DG Sbjct: 47 DLLRHYPFRYADPGTLTDIASLRVGDTVTVVADVRQAVVRRARSTNAARLEVQITDGRSA 106 Query: 101 ITLLFF--YRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD-------- 150 + L+FF R E L GR+ TG+I + + HP Y + D Sbjct: 107 LQLIFFGGARHHERL---LVPGRRGLFTGQISAFGGHLQLAHPTYEMFDGDDEGERVAVE 163 Query: 151 -VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-------PVLPEWIEKDLLQKKSFPSI 202 +P VY GL + AL L PV P L ++ + + Sbjct: 164 RATWP--RPVYRAGAGLDTTKIAAAVRTALGTLRDEDVVDPVPPA-----LREQHALADL 216 Query: 203 AEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA 262 +H P D+ +RL Y+E Q L R + E +A Sbjct: 217 HRTLRDVHEPHTDDDWRRAR---DRLRYEEAFVLQAELARRRARAAAEP---ATARPPVA 270 Query: 263 QKILR----NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318 +L +PF+ T Q + I ++++ M R+LQG+VGSGKTLVAL AM V Sbjct: 271 DGVLAAFDARLPFTLTAGQREVGETIAAELARPVPMQRLLQGEVGSGKTLVALRAMLQVV 330 Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQN-----------TQIIVEIITGNMPQAHRRKA 367 +AGGQA ++AP +LA QH ++ + V ++TG+ P A R+ A Sbjct: 331 DAGGQAALLAPTEVLAAQHARSLRALLGDLAEGGMLGGAPDATRVALLTGSQPAAARKAA 390 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVLLM 426 L A G A I++GTHAL ++Q+ L LV+VDEQH+FGV+QR L K AT+PH+L+M Sbjct: 391 LLDAASGAAGIVVGTHALLSATVQFADLGLVVVDEQHKFGVEQRDTLRAKAATSPHLLVM 450 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGK 483 TATPIPRT+ +T GD++ S + E PAGR + T ++P + + R++ +++G Sbjct: 451 TATPIPRTVAMTVFGDLETSVLREVPAGRSGVTTHVVPADNPVWMSRTWARVREEVAQGG 510 Query: 484 KAYWICPQIEEKKESN---------------------FRSVVERFNSLHEHFTS---SIA 519 +AY +CP+I+ E R+V++ L ++ Sbjct: 511 RAYVVCPRIDGDDERGADDVDLVADDVEVADAPARRPLRAVLDVAAELAAEPALEGVAVG 570 Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579 ++HGRM+ DK+ + F +G +L++TTV+EVG+DV +A+ +++ +A+ FG++QLHQL Sbjct: 571 VLHGRMTPEDKDRALADFASGAVPVLVSTTVVEVGVDVPEATAMVVLDADRFGVSQLHQL 630 Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639 RGR+GRG C+L+ + R+ L T DGF +A DL+QR EG++LG Q Sbjct: 631 RGRIGRGSAPGVCLLVSTAEPGTPAAERVDTLARTSDGFALASFDLEQRGEGDVLGASQW 690 Query: 640 GMPKFL-IAQPELHDSLLEIARKDAKHILTQDPDLTSVR--GQSIRILL 685 G L + + L+E AR DA+ + QDP+LTS G +IR LL Sbjct: 691 GGSSSLRLLRVTRDGDLIERARDDARAFVEQDPELTSWPPLGDAIRALL 739 >gi|311113805|ref|YP_003985027.1| ATP-dependent DNA helicase [Rothia dentocariosa ATCC 17931] gi|310945299|gb|ADP41593.1| ATP-dependent DNA helicase [Rothia dentocariosa ATCC 17931] Length = 1119 Score = 315 bits (808), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 212/652 (32%), Positives = 341/652 (52%), Gaps = 84/652 (12%) Query: 97 GTGEI----TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDV 151 GTG + L FF T + G + +GK+ + + +PHY + + + Sbjct: 452 GTGRVGSTMKLSFFNAWTAARE--IHAGETMMFSGKVGIYRGEYTLTNPHYALLSDDGNA 509 Query: 152 NFP-LIEA---VYSLPTGLSVDLFKKIIVEALSRLPV--LPEWIEKDLLQKKSFPSIAEA 205 N P EA VY P L D I + + +P+ L + I + + + PS+ Sbjct: 510 NTPERAEAPIPVYRAPVKLPTDRIATAIAQLIESVPLKELEDPIPYKIRRARKVPSLEWT 569 Query: 206 FNIIHNPRKAKDFEWTSPARERLAYDE--LLAGQIALLLMRKQFKKEIGIPINVEGKIAQ 263 + +H P + W + A+ ++ Y E +L +A L + + P +G A Sbjct: 570 YRALHTPDS--EDTWRA-AQAQMRYREAFVLQSALARLHAARAAHATVARPALPDG-AAD 625 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 +L +P+ T+ Q+ K+I +D++ + M R+LQGDVGSGKT+VAL AM ++GGQ Sbjct: 626 ALLNVLPYELTEGQQRVGKEISRDLASPSPMNRLLQGDVGSGKTVVALRAMLQVADSGGQ 685 Query: 324 AVIMAPIGILAQQHY-------------EFIKKYT------QNTQ--------IIVEIIT 356 + ++AP +LA+QH+ E I Y QN + + V +++ Sbjct: 686 SAMLAPTEVLAEQHFRSILDILGDLADTEGIPGYETTLFRPQNQKESKKPAHRVRVRLLS 745 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-T 415 +MP AH+R L IA G A ++IGTHAL D++ + L +V+VDEQHRFGV+QR L Sbjct: 746 ASMPSAHKRAVLAEIADGTADVVIGTHALLSDTVTFRDLGMVVVDEQHRFGVEQRDSLRG 805 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEV 471 PH L+MTATPIPRT+ +T GD+D+S + + PAGR+ T ++P+ D + Sbjct: 806 NNGELPHRLVMTATPIPRTVAMTVFGDLDVSVLDQLPAGRQQTATHVVPLAEKPTWADRL 865 Query: 472 IERLKVVLSEGKKAYWICPQIEEKKE-------------------SNFRSVVERFNSLHE 512 R + + G + Y + P+I + E S+ ++ + ++ Sbjct: 866 WTRAREEIDAGHQVYVVVPKIGDDDEELEEGQQLFGDAGREGSQSSDGKTRLTSVTAMTA 925 Query: 513 HFT-------SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + + IA +HGRM +K +VM +F+ G +L++TTVIEVG++V +A++++I Sbjct: 926 YLKQNPALTGTRIASLHGRMDPEEKTAVMTAFERGEIDILVSTTVIEVGVNVPNATLMMI 985 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625 +A+ FG++ LHQLRGRVGRG +C+L+ S RL + T DGF +++ DL Sbjct: 986 MDADRFGISGLHQLRGRVGRGGFAGTCLLVTRQQAGGVSRERLDAVAATTDGFKLSQIDL 1045 Query: 626 KQRKEGEILGIKQSGMP---KFLIAQPELHD-SLLEIARKDAKHILTQDPDL 673 +QR+EG+ILG QSG KFL A L D +++E AR+DA+ ++ DP L Sbjct: 1046 QQRREGDILGAAQSGKKSTLKFLRA---LADATIIERAREDARALIAADPTL 1094 >gi|313794017|gb|EFS42041.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL110PA1] gi|313801403|gb|EFS42654.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL110PA2] gi|313839875|gb|EFS77589.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL086PA1] gi|314963629|gb|EFT07729.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL082PA1] gi|315079483|gb|EFT51476.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL053PA2] gi|327451962|gb|EGE98616.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL092PA1] Length = 749 Score = 315 bits (808), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 196/606 (32%), Positives = 316/606 (52%), Gaps = 57/606 (9%) Query: 85 QKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139 ++RRP +++L+DG + + FF + + +F GK+ + + +V Sbjct: 95 RERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 154 Query: 140 HPHYIFHN---------------SQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSR 181 HP ++ + + V + +Y + L + + +++E+ Sbjct: 155 HPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYPQTSKLRTWEIASVESMLLESTPE 214 Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 L LPEW L Q+ PS+ EA++ IH P + + + ERL ++E +A Q+ + Sbjct: 215 LEDTLPEW----LRQEADLPSLWEAYHAIHYPHSVAEADRGA---ERLIWEEAIATQVTM 267 Query: 241 LLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 + R+ ++ + + +G + +PF+PT Q+ + I D+S M R+LQ Sbjct: 268 AVRRRSAERHDAPVCSRRDGGLLVAFEDRLPFTPTVGQDEVSRVIDADLSADRPMHRLLQ 327 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-----------T 348 G+VGSGKT VAL AM V+AG QAV++AP +LAQQHY I + Sbjct: 328 GEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGEGLDAPEI 387 Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408 V ++TG+M A R AL IA G A II+GTH+L + Y + LV+VDEQHRFGV Sbjct: 388 STGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFGV 447 Query: 409 QQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-- 465 +QR LT A PH L++TATPIPRT+ +T GD+++S + E P GR ++T ++ + Sbjct: 448 EQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLPA 507 Query: 466 --NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS--- 517 + + +R++ G + + +CP+I + R L + Sbjct: 508 HGSWLTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGRPPAAAVEELAPQLATGPLA 567 Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + +H R+ +K+ VMD F G ++LI+TTVIEVG+DV +A++++I +A+ FG++ Sbjct: 568 GLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGVS 627 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGR+GRG C+L+ P + RL + + DGF +AE DL QR EG +L Sbjct: 628 QLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNVL 687 Query: 635 GIKQSG 640 G Q+G Sbjct: 688 GSSQAG 693 >gi|289426329|ref|ZP_06428072.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes SK187] gi|289153057|gb|EFD01775.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes SK187] Length = 739 Score = 315 bits (808), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 196/606 (32%), Positives = 316/606 (52%), Gaps = 57/606 (9%) Query: 85 QKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139 ++RRP +++L+DG + + FF + + +F GK+ + + +V Sbjct: 85 RERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 144 Query: 140 HPHYIFHN---------------SQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSR 181 HP ++ + + V + +Y + L + + +++E+ Sbjct: 145 HPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYPQTSKLRTWEIASVESMLLESTPE 204 Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 L LPEW L Q+ PS+ EA++ IH P + + + ERL ++E +A Q+ + Sbjct: 205 LEDTLPEW----LRQEADLPSLWEAYHAIHYPHSVAEADRGA---ERLIWEEAIATQVTM 257 Query: 241 LLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 + R+ ++ + + +G + +PF+PT Q+ + I D+S M R+LQ Sbjct: 258 AVRRRSAERHDAPVCSRRDGGLLVAFEDRLPFTPTVGQDEVSRVIDADLSADRPMHRLLQ 317 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-----------T 348 G+VGSGKT VAL AM V+AG QAV++AP +LAQQHY I + Sbjct: 318 GEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGEGLDAPEI 377 Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408 V ++TG+M A R AL IA G A II+GTH+L + Y + LV+VDEQHRFGV Sbjct: 378 STGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFGV 437 Query: 409 QQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-- 465 +QR LT A PH L++TATPIPRT+ +T GD+++S + E P GR ++T ++ + Sbjct: 438 EQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLPA 497 Query: 466 --NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS--- 517 + + +R++ G + + +CP+I + R L + Sbjct: 498 HGSWLTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGRPPAAAVEELAPQLATGPLA 557 Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + +H R+ +K+ VMD F G ++LI+TTVIEVG+DV +A++++I +A+ FG++ Sbjct: 558 GLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGVS 617 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGR+GRG C+L+ P + RL + + DGF +AE DL QR EG +L Sbjct: 618 QLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNVL 677 Query: 635 GIKQSG 640 G Q+G Sbjct: 678 GSSQAG 683 >gi|145641878|ref|ZP_01797453.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae R3021] gi|145273500|gb|EDK13371.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae 22.4-21] Length = 390 Score = 315 bits (808), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 163/373 (43%), Positives = 237/373 (63%), Gaps = 6/373 (1%) Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +VA +A A++ G Q +MAP ILA+QH +++ + I V + G + R+ Sbjct: 1 MVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGKSRQAE 60 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHV 423 LE+I G +++GTHALFQ+ +++ L LVI+DEQHRFGV QRL L +K PH Sbjct: 61 LEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRLMLREKGEKAGFYPHQ 120 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VVLSEG 482 L+MTATPIPRTL +T D+D S I E P GR PI TV++ R E++ R+K ++E Sbjct: 121 LIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRAEIVMRVKNACVNEK 180 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541 ++AYW+C I+E + ++ + L + +I ++HGRM +K+ VM FKN Sbjct: 181 RQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMRFKNAE 240 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 LL+ATTVIEVG+DV +AS++IIENAE GL+QLHQLRGRVGRG S C+L+Y PPL Sbjct: 241 LDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYKPPLG 300 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 K S RL VL++++DGF+I+E+DL+ R GE+LG KQ+G+ + +A ++ + Sbjct: 301 KVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRVANLMRDRKMIPTVQF 360 Query: 662 DAKHILTQDPDLT 674 AK ++ + PDL Sbjct: 361 YAKSLIQKYPDLA 373 >gi|303233282|ref|ZP_07319954.1| putative ATP-dependent DNA helicase RecG [Atopobium vaginae PB189-T1-4] gi|302480672|gb|EFL43760.1| putative ATP-dependent DNA helicase RecG [Atopobium vaginae PB189-T1-4] Length = 775 Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 220/705 (31%), Positives = 343/705 (48%), Gaps = 80/705 (11%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP----YKILLNDGT 98 DLL P ++D ++ I+ + + VTI I++ S +L +P +++ + D + Sbjct: 53 DLLMCMPRRYLDFTHQVDIAHAAINQTVTI---IARVDSIKLTYPKPRLSIFEMFVVDKS 109 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKI------KKLKNRIIMV-----HPHYIFHN 147 + L FF + L + G + ++GK+ K + ++ V Sbjct: 110 AAMRLSFF--RQPWLAKKYHVGDVVALSGKVAFSYGFKTMNAPLVEVLTPASSLPSSSPV 167 Query: 148 SQDVNFPLIEAVYSLPTGL------------SVDLFKKIIVEALSRLPVLPEWIEKDLLQ 195 S D PL + Y+ P+ + S ++ + +AL++ + +W+ L+ Sbjct: 168 STDATQPLTQGTYAQPSNMRVMPIYAMCADISTAVYHAAVKQALAQYVPVVDWLPSTLVA 227 Query: 196 KKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR-KQFKKEIGIP 254 K + +AF +H PR D AR R AY+ELL Q+AL + + + G Sbjct: 228 KHQLLGVNQAFFSMHAPRTCAD---VYHARRRFAYEELLYLQLALRMRHVNETGERAGFT 284 Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 +G ++ LR +PFS T Q+ ++L DM+ MLR+L GDVG+GKT V + M Sbjct: 285 HVTQGPCVERFLRALPFSYTTEQQQCADELLGDMAANKPMLRLLLGDVGTGKTAVCALGM 344 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 AA + QA +MAP +LA Q+ + I I ++T P A R + IA G Sbjct: 345 AACCDTHTQAALMAPTVVLASQYTQSIGPLLDAAHISWALLTSATPAAERARICNDIARG 404 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--------APHVLLM 426 ++ GT AL IQ+ L +I+DEQHRFGV QR +L KA VL+M Sbjct: 405 AITVVFGTVALLSKDIQFSALSYIIIDEQHRFGVHQREELQHKAQLSSARPGHTADVLMM 464 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486 +ATP+PR+L L+ GD+ +S+I KP I T IIP + ++ L+ G++ Y Sbjct: 465 SATPVPRSLALSLYGDMAVSRICHKPHAGAKITTHIIPTENLFVAYSAMQEALARGEQCY 524 Query: 487 WICPQI----------EEKKESNFR-------SVVERFNSLHEHFTSS------------ 517 ICP I + SN R V + F S +H ++ Sbjct: 525 IICPSITESSADSTTTSSAESSNVRVHADDACDVADAFVSQTKHIHAAQTVHEQLLRGEF 584 Query: 518 ----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 I ++ G + DKE VM++F+ +L+ATT++EVG+DV +A+ ++I +A+ FGL Sbjct: 585 SAWRIGLLTGALKTEDKERVMEAFRAHEIDVLVATTIVEVGVDVPNANTMLILDADRFGL 644 Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633 A LHQLRGRVGRG + + + TRL++L++T DGF +A+ DL+ R EGEI Sbjct: 645 ATLHQLRGRVGRGSAPAQVFMHCAARPQTPARTRLAMLEHTNDGFELAQRDLELRSEGEI 704 Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL---TQDPDLTS 675 LG KQSG+ L+E AR DA I+ TQ + TS Sbjct: 705 LGYKQSGVQTLTFCDMVQDIDLIEAARVDADEIIEKSTQTCEHTS 749 >gi|228982575|ref|ZP_04142834.1| ATP-dependent DNA helicase RecG [Bacillus thuringiensis Bt407] gi|228776758|gb|EEM25066.1| ATP-dependent DNA helicase RecG [Bacillus thuringiensis Bt407] Length = 604 Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 205/601 (34%), Positives = 334/601 (55%), Gaps = 37/601 (6%) Query: 86 KRRPYKILL--NDGTGEITLLFFY------RKTEMLKNVFFEGRKITVTGKIKKLKNRII 137 K +P ++L D I + F+ +K + ++ F GR ++VT +K + Sbjct: 5 KTKPNAVILKVEDSKASIIYVTFFHQSYIAQKFTINESYIFCGR-VSVTYGYRKF---VS 60 Query: 138 MVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK 197 M +P ++ S ++N P I VYS G+S D K+ + A S + E++E +++K Sbjct: 61 MANP-ILYGPSSELN-PGILPVYSKIKGMSDDYLKRCMNSAYS-IVRSDEYLENSIIKKF 117 Query: 198 SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257 +A IH P+ E + + R +DEL + LL K+ I+ Sbjct: 118 DMIYFRKALQYIHFPKTT---EEINEGKSRFLFDELFFFNLNLLQNENNQMKQSPFEID- 173 Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317 + +++++++ +PF T+ Q +A++ I + M K R+ ++QGDVG GKT+VA+ ++ A Sbjct: 174 KFELSKQLMGELPFELTEGQRNALRMISKKMKNKERVNALIQGDVGCGKTMVAIFSLLMA 233 Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377 VE G Q +M P +LA+QHYE I + + I V ++G+M R+K ++ I G+ Sbjct: 234 VENGYQGALMCPTSVLAKQHYEEITERFSSFGIKVAYLSGDMKVRERKKVVKAIKEGEVD 293 Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLV 436 I++GTHA+ +++ L L IVDE+HRFGV+QR L KA+ H + M+ATPIPR+L Sbjct: 294 IVVGTHAVLSKDVEFQSLALTIVDEEHRFGVKQRELLQLKASKGVHTISMSATPIPRSLA 353 Query: 437 LTSLGD-IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495 LT GD ID+ I P GRKP++T +I + ++ R+ + G++AY +CP +EE Sbjct: 354 LTIHGDSIDVMNIKSLPKGRKPVETTLITVE--EDSYRRIYEEVKSGRQAYVVCPLVEES 411 Query: 496 KES---NFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549 + SV E F +F + + G+M D ++ ++ F N + I+TT Sbjct: 412 NSDMLKDVESVEEAFAKAKTYFEPKGIRVGMATGKMKQQDIDAELEKFANKEYDIFISTT 471 Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609 +IEVG++V +A++I+I+NAE FGLAQLHQLRGRVGRG S C+LL ++ +L Sbjct: 472 IIEVGVNVPNATVILIKNAERFGLAQLHQLRGRVGRGSYQSYCLLL-SDKATEMGRRKLE 530 Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF---LIAQPELHDSLLEIARKDAKHI 666 + T DGFLIAE+DL+ R G+ +G QSG K+ ++ +L++S+ R + K I Sbjct: 531 TMCETTDGFLIAEKDLELRGTGDFIGTSQSGQDKYVMLMLGNTDLNESI----RNEVKDI 586 Query: 667 L 667 L Sbjct: 587 L 587 >gi|301165526|emb|CBW25097.1| putative ATP-dependent DNA helicase [Bacteriovorax marinus SJ] Length = 713 Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 189/532 (35%), Positives = 301/532 (56%), Gaps = 22/532 (4%) Query: 153 FPLIEAVYSLPTGLSVDLFKKIIVEALSRL-----PVLPEWIEKDLLQKKSFPSIAEAFN 207 P ++ Y G++ KK+I + ++L ++PE I + Q+K P + ++F Sbjct: 169 LPNLKIQYPTINGVNSSNIKKVIDKIPAQLWREIEDIIPEDIRE---QRKLLP-LDQSFL 224 Query: 208 IIHNPRKAKDFE-WTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA 262 +IH K + E W+ A++RL Y+E L Q+ + L +K+ I + ++ Sbjct: 225 LIH--AKTEHLEKWSDGLYEEAKKRLIYEEFLDEQLKIHLRKKKNINISAIKLEIKDVDR 282 Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 +K P+ T Q+S +K+I D++ RM+R++QGDVG GKT VA+ + + +G Sbjct: 283 KKYSSIYPYELTPDQDSTLKEICIDLNSGKRMMRLVQGDVGCGKTTVAITSSFLIINSGL 342 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q +M P LA+QH+E I+ Y + + +++ G+ +++ L+ + +G+ IIGT Sbjct: 343 QVALMCPTEALAKQHFEEIQSYCHDLKFTSKLLCGSTSSKDKKEILKGLENGEVDFIIGT 402 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 HAL Q+ +++ L L I+DEQH+FGV QRLKL K H L+M+ATPIPR+L +T GD Sbjct: 403 HALIQNEVKFKNLALAIIDEQHKFGVDQRLKLLNKGEGTHCLIMSATPIPRSLSMTQYGD 462 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES---N 499 ++IS I P+GRK KT I+ + + + S G++ Y + P I E + N Sbjct: 463 LNISTIKTIPSGRKGSKTRIVMPENFGKFLNFINTRASMGEQIYIVVPAITESPKQDMLN 522 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 V+E+F + ++ +HG++ + DK V+ FKN +LIAT+VIEVGI++++ Sbjct: 523 LEEVLEKFKKFFPNL--NVQGLHGQLKNEDKNQVLKEFKNNEVNILIATSVIEVGINILN 580 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619 A+++ I N E FGL+ LHQLRGRVGRG++ C L+ +S+ S R+ V++ DGF Sbjct: 581 ATVMAIMNPERFGLSSLHQLRGRVGRGDKPGFCFLVIDKSVSQESIHRVQVIEKYSDGFQ 640 Query: 620 IAEEDLKQRKEGEILGIKQSGMPKF-LIAQPELHDSLLEIARKDAKHILTQD 670 IAEEDLK R G+ G +QSG IA L S L+ R D IL Q+ Sbjct: 641 IAEEDLKIRGAGDTFGKEQSGSNNGKKIANIILDFSTLQAVRDDLSEILKQN 692 >gi|300741702|ref|ZP_07071723.1| ATP-dependent DNA helicase RecG [Rothia dentocariosa M567] gi|300380887|gb|EFJ77449.1| ATP-dependent DNA helicase RecG [Rothia dentocariosa M567] Length = 763 Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 208/651 (31%), Positives = 339/651 (52%), Gaps = 82/651 (12%) Query: 97 GTGEIT----LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDV 151 GTG + L FF T + G + +GK+ + + +PHY + + + Sbjct: 96 GTGRVGSTMKLSFFNAWTAARE--IHAGETMMFSGKVGIYRGEYTLTNPHYALLSDDGNA 153 Query: 152 NFP-LIEA---VYSLPTGLSVDLFKKIIVEALSRLPV--LPEWIEKDLLQKKSFPSIAEA 205 N P EA VY P L D I + + +P+ L + I + + + PS+ Sbjct: 154 NAPERAEAPIPVYRAPVKLPTDRIATAIAQLIESVPLKELEDPIPYKIRRARKVPSLEWT 213 Query: 206 FNIIHNPRKAKDFEWTSPARERLAYDE--LLAGQIALLLMRKQFKKEIGIPINVEGKIAQ 263 + +H P + W + A+ ++ Y E +L +A L + + P +G A Sbjct: 214 YRALHTPDS--EDTWRA-AQAQMRYREAFVLQSALARLHAARAAHATVARPALPDGA-AD 269 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 +L +P+ T+ Q+ K+I +D++ + M R+LQGDVGSGKT+VAL AM ++GGQ Sbjct: 270 ALLNVLPYELTEGQQRVGKEISRDLASPSPMNRLLQGDVGSGKTVVALRAMLQVADSGGQ 329 Query: 324 AVIMAPIGILAQQH-------------------YEFIKKYTQNTQ--------IIVEIIT 356 + ++AP +LA+QH YE + QN + + V +++ Sbjct: 330 SAMLAPTEVLAEQHFRSILDILGDLADTEGIPGYETTLFHPQNQKESKKPAHRVRVRLLS 389 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-T 415 +MP AH+R L +A G A ++IGTHAL D++ + L +V+VDEQHRFGV+QR L Sbjct: 390 ASMPSAHKRAVLAELADGTADVVIGTHALLSDAVTFRDLGMVVVDEQHRFGVEQRDSLRG 449 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI----NRIDEV 471 PH L+MTATPIPRT+ +T GD+D+S + + PAGR+ T ++P+ D + Sbjct: 450 NNGELPHRLVMTATPIPRTVAMTVFGDLDVSVLDQLPAGRQQTATHVVPLVEKPTWADRL 509 Query: 472 IERLKVVLSEGKKAYWICPQIEEKKE-------------------SNFRSVVERFNSLHE 512 R + + G + Y + P+I + E S+ ++ + ++ Sbjct: 510 WTRAREEIDAGHQVYVVVPKIGDDDEELEEGQQLFGDAGREGSQSSDGKTRLTSVTAMTA 569 Query: 513 HF-------TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + + IA +HGRM +K +VM +F+ G +L++TTVIEVG++V +A++++I Sbjct: 570 YLKQNPALTGTRIASLHGRMDPEEKTAVMTAFERGEIDILVSTTVIEVGVNVPNATLMMI 629 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625 +A+ FG++ LHQLRGRVGRG +C+L+ S RL + T DGF +++ DL Sbjct: 630 MDADRFGISGLHQLRGRVGRGGFAGTCLLVTRQQAGGVSRERLDAVAATTDGFKLSQIDL 689 Query: 626 KQRKEGEILGIKQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 +QR+EG+ILG QSG KFL A + +++E AR+DA+ ++ DP L Sbjct: 690 QQRREGDILGAAQSGKKSTLKFLRALADA--TIIERAREDARALIAADPTL 738 >gi|282850862|ref|ZP_06260236.1| putative ATP-dependent DNA helicase RecG [Lactobacillus gasseri 224-1] gi|282557814|gb|EFB63402.1| putative ATP-dependent DNA helicase RecG [Lactobacillus gasseri 224-1] Length = 401 Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 158/381 (41%), Positives = 247/381 (64%), Gaps = 2/381 (0%) Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R+LQGDVGSGKT+VA+ A+ A + AG QA +M P ILAQQH+ + + + + V Sbjct: 1 MKRLLQGDVGSGKTVVAVFAIYATITAGFQAALMVPTEILAQQHFAKVDELLRPLGVRVA 60 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++TG+ + +++ +A G +++IGTHAL Q + + L LVI+DEQHRFGV QR Sbjct: 61 LLTGDTKELEKKEIYRELADGTINVVIGTHALIQKDVHFKNLGLVIIDEQHRFGVNQRNT 120 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 L +K AP VL MTATPIPRTL LT GD+ +S+I P GRKP+ + +++ EV+E Sbjct: 121 LIKKGVAPDVLAMTATPIPRTLALTVYGDMAVSEIRHLPKGRKPVVSSWATSSKLKEVLE 180 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532 ++ L +G + Y + P I E ++S+ ++ + L +F ++ ++HG+M K Sbjct: 181 LMRSQLEKGFQIYVVTPLISESEKSDLKNAEDLQARLAHYFKDENVVLLHGQMKGDQKNE 240 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +MDSF G +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+ S C Sbjct: 241 IMDSFAAGKIDILVTTSVIEVGVDVPNANMMVIFNADRFGLSQLHQLRGRIGRGQTQSFC 300 Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 + + P ++ R++++ +T +GF +AEEDLK R EG++ G QSG+P+F + Sbjct: 301 VFVSDPK-TEIGKKRMNIITSTSNGFKLAEEDLKLRGEGDVFGKAQSGLPQFQVGDVVND 359 Query: 653 DSLLEIARKDAKHILTQDPDL 673 + L A+K+A+ ++ DP+L Sbjct: 360 YNTLVTAQKEARALVKADPNL 380 >gi|216263710|ref|ZP_03435705.1| ATP-dependent DNA helicase RecG [Borrelia afzelii ACA-1] gi|215980554|gb|EEC21375.1| ATP-dependent DNA helicase RecG [Borrelia afzelii ACA-1] Length = 686 Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 211/623 (33%), Positives = 330/623 (52%), Gaps = 34/623 (5%) Query: 43 DLLFYHPSSFIDRH---YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LND 96 DL+ + P + DR P S++ ++T+ + H F ++ K+ +ND Sbjct: 34 DLIEFFPVKYEDRQNIQTFPDFSKVKSCDMMTVFTVVG-HKKFGDSSKKNLKLTAKSVND 92 Query: 97 GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY---IFHNSQDVNF 153 EI L F R L+NVF +K + K + ++ +F ++ + F Sbjct: 93 EPFEI--LLFNRA--FLENVFKIDKKFYIYSKFTYNDYSGLWSCSNFDSEVFSDNPE-RF 147 Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNP 212 I VYSL GL+ + EAL + I K L++K S S++EA IH P Sbjct: 148 KKILPVYSLTEGLTSKKISLYVREALEYFFKFGQTDIPKFLIEKYSLLSLSEALKEIHFP 207 Query: 213 RKAKDFEWTSPARERLAYDELLAGQI------ALLLMRKQFKKEIGIPINVEGKIAQKIL 266 E A++ L Y E+ Q + +L R++ ++ + ++++ Sbjct: 208 ---SSLEMLEKAKKTLIYREIFLLQFFSRYRSSKVLFREK--------KHLSRDLLERVI 256 Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 ++PF T+ Q +I +I D++ M R+LQGDVGSGKTLVAL++ +EAG Q Sbjct: 257 SSLPFELTEGQRISIDEIFSDLNSSKPMNRLLQGDVGSGKTLVALLSGIPLIEAGYQVAF 316 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 MAP +LA+QHY+ + I V ++TG++ + + +ALE I G + +I+GTHA+F Sbjct: 317 MAPTDLLARQHYDNLSNILSPFNISVTLLTGSLKKRDKEQALESIKSGASGLIVGTHAIF 376 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 +S ++ +L VI+DEQH+FGV QR +L K +LLM+ATPIPR+ LT GD++IS Sbjct: 377 YESTEFKRLAYVIIDEQHKFGVVQREELKNKGEGVDMLLMSATPIPRSFALTLFGDLEIS 436 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 I P GR PI T + +V E L+ L++G + Y++ P I ++ + V Sbjct: 437 FIKTLPKGRLPITTYLAKHGNEGKVYEFLRKELAKGHQVYFVYPLISSSEKFELKDVNNM 496 Query: 507 FNSLHEHFTSSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 L E F + ++H ++ KE +M +F + +L+AT+VIEVGID +A+ +++ Sbjct: 497 CLKLKEVFGEYVVDMLHSKLPSDLKEEIMKNFYSKKVDILVATSVIEVGIDCPNATCMVV 556 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625 E+AE FGL+ LHQ+RGRVGR S LLY PL+ RL +K DGF IAEEDL Sbjct: 557 EHAERFGLSTLHQIRGRVGRSNLQSFFFLLYKEPLTSAGKFRLKTIKENLDGFKIAEEDL 616 Query: 626 KQRKEGEILGIKQSGMPKFLIAQ 648 + R G + G++Q+G K IA Sbjct: 617 RLRGPGNLFGLEQAGYLKLKIAN 639 >gi|313763622|gb|EFS34986.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL013PA1] gi|313816802|gb|EFS54516.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL059PA1] gi|313829579|gb|EFS67293.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL063PA2] gi|314914626|gb|EFS78457.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL005PA4] gi|314920828|gb|EFS84659.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL050PA3] gi|314954335|gb|EFS98741.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL027PA1] gi|314957387|gb|EFT01490.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL002PA1] gi|315099250|gb|EFT71226.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL059PA2] gi|315100516|gb|EFT72492.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL046PA1] gi|315109049|gb|EFT81025.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL030PA2] gi|327455001|gb|EGF01656.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL087PA3] gi|328755165|gb|EGF68781.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL087PA1] gi|328758056|gb|EGF71672.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL025PA2] Length = 749 Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 196/606 (32%), Positives = 315/606 (51%), Gaps = 57/606 (9%) Query: 85 QKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139 ++RRP +++L+DG + + FF + + +F GK+ + + +V Sbjct: 95 RERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 154 Query: 140 HPHYIFHN---------------SQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSR 181 HP ++ + + V + +Y + L + + +++E+ Sbjct: 155 HPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYPQTSKLRTWEIASVESMLLESTPE 214 Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 L LPEW L Q+ PS+ EA++ IH P + + + ERL ++E +A Q+ + Sbjct: 215 LEDTLPEW----LRQEADLPSLWEAYHAIHYPHSVAEADRGA---ERLIWEEAIATQVTM 267 Query: 241 LLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 + R+ ++ + + +G + +PF+PT Q+ + I D+S M R+LQ Sbjct: 268 AVRRRSAERHDAPVCSRRDGGLLVAFEDRLPFTPTVGQDEVSRVIDADLSADRPMHRLLQ 327 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-----------T 348 G+VGSGKT VAL AM V+AG QAV++AP +LAQQHY I + Sbjct: 328 GEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGEGLDAPEI 387 Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408 V ++TG+M A R AL IA G A II+GTH+L + Y + LV+VDEQHRFGV Sbjct: 388 STGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFGV 447 Query: 409 QQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-- 465 +QR LT A PH L++TATPIPRT+ +T GD+++S + E P GR ++T ++ + Sbjct: 448 EQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLPA 507 Query: 466 --NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS--- 517 + + R++ G + + +CP+I + R L + Sbjct: 508 HGSWLTRAWRRIREECDAGHQVFVVCPRINSDDADDVEGGRPPAAAVEELAPQLATGPLA 567 Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + +H R+ +K+ VMD F G ++LI+TTVIEVG+DV +A++++I +A+ FG++ Sbjct: 568 GLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGVS 627 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGR+GRG C+L+ P + RL + + DGF +AE DL QR EG +L Sbjct: 628 QLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNVL 687 Query: 635 GIKQSG 640 G Q+G Sbjct: 688 GSSQAG 693 >gi|314930507|gb|EFS94338.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL067PA1] Length = 749 Score = 314 bits (805), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 196/606 (32%), Positives = 315/606 (51%), Gaps = 57/606 (9%) Query: 85 QKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139 ++RRP +++L+DG + + FF + + +F GK+ + + +V Sbjct: 95 RERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 154 Query: 140 HPHYIFHN---------------SQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSR 181 HP ++ + + V + +Y + L + + +++E+ Sbjct: 155 HPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYPQTSKLRTWEIASVESMLLESTPE 214 Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 L LPEW L Q+ PS+ EA++ IH P + + + ERL ++E +A Q+ + Sbjct: 215 LEDTLPEW----LRQEADLPSLWEAYHAIHYPHSVAEADRGA---ERLIWEEAIATQVTM 267 Query: 241 LLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 + R+ ++ + + +G + +PF+PT Q+ + I D+S M R+LQ Sbjct: 268 AVRRRSAERHDAPVCSRRDGGLLVAFEDRLPFTPTVGQDEVSRVIDADLSADRPMHRLLQ 327 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-----------T 348 G+VGSGKT VAL AM V+AG QAV++AP +LAQQHY I + Sbjct: 328 GEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGEGLDAPEI 387 Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408 V ++TG+M A R AL IA G A II+GTH+L + Y + LV+VDEQHRFGV Sbjct: 388 STGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFGV 447 Query: 409 QQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-- 465 +QR LT A PH L++TATPIPRT+ +T GD+++S + E P GR ++T ++ + Sbjct: 448 EQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLPA 507 Query: 466 --NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS--- 517 + + R++ G + + +CP+I + R L + Sbjct: 508 HGSWLTRAWRRIREECDAGHQVFVVCPRINSDDADDVEGGRPPAAAVEELAPQLATGPLA 567 Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + +H R+ +K+ VMD F G ++LI+TTVIEVG+DV +A++++I +A+ FG++ Sbjct: 568 GLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGVS 627 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGR+GRG C+L+ P + RL + + DGF +AE DL QR EG +L Sbjct: 628 QLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNVL 687 Query: 635 GIKQSG 640 G Q+G Sbjct: 688 GSSQAG 693 >gi|111115409|ref|YP_710027.1| ATP-dependent DNA helicase RecG [Borrelia afzelii PKo] gi|110890683|gb|ABH01851.1| DNA recombinase [Borrelia afzelii PKo] Length = 686 Score = 314 bits (805), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 210/623 (33%), Positives = 331/623 (53%), Gaps = 34/623 (5%) Query: 43 DLLFYHPSSFIDRH---YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LND 96 DL+ + P + DR P S++ ++T+ + H F ++ K+ +ND Sbjct: 34 DLIEFFPVKYEDRQNIQTFPDFSKVKSCDMMTVFTVVG-HKKFGDSSKKNLKLTAKSVND 92 Query: 97 GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY---IFHNSQDVNF 153 EI L F R L+NVF +K + K + ++ +F ++ + F Sbjct: 93 EPFEI--LLFNRA--FLENVFKIDKKFYIYSKFTYNDYSGLWSCSNFDSEVFSDNPE-RF 147 Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNP 212 I VYSL GL+ + EAL + I K L++K S S++EA IH P Sbjct: 148 KKILPVYSLTEGLTSKKISLYVREALEYFFKFGQTDIPKFLIEKYSLLSLSEALKEIHFP 207 Query: 213 RKAKDFEWTSPARERLAYDELLAGQI------ALLLMRKQFKKEIGIPINVEGKIAQKIL 266 E A++ L Y E+ Q + +L R++ ++ + ++++ Sbjct: 208 ---SSLEMLEKAKKTLIYREIFLLQFFSRYRSSKVLFREK--------KHLSRDLLERVI 256 Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 ++PF T+ Q +I +I D++ M R+LQGDVGSGKTLVAL++ +EAG Q Sbjct: 257 SSLPFELTEGQRISIDEIFSDLNSSKPMNRLLQGDVGSGKTLVALLSGIPLIEAGYQVAF 316 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 MAP +LA+QHY+ + + I V ++TG++ + + ++LE I G + +I+GTHA+F Sbjct: 317 MAPTDLLARQHYDNLSNILSSFNISVTLLTGSLKKRDKEQSLESIKSGASGLIVGTHAIF 376 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 +S ++ +L VI+DEQH+FGV QR +L K +LLM+ATPIPR+ LT GD++IS Sbjct: 377 YESTEFKRLAYVIIDEQHKFGVVQREELKNKGEGVDMLLMSATPIPRSFALTLFGDLEIS 436 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 I P GR PI T + +V E L+ L++G + Y++ P I ++ + V Sbjct: 437 FIKTLPKGRLPITTYLAKHGNEGKVYEFLRKELAKGHQVYFVYPLISSSEKFELKDVNNM 496 Query: 507 FNSLHEHFTSSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 L E F + ++H ++ KE +M +F + +L+AT+VIEVGID +A+ +++ Sbjct: 497 CLKLKEVFGEYVVDMLHSKLPSDLKEEIMKNFYSKKVDILVATSVIEVGIDCPNATCMVV 556 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625 E+AE FGL+ LHQ+RGRVGR S LLY PL+ RL +K DGF IAEEDL Sbjct: 557 EHAERFGLSTLHQIRGRVGRSNLQSFFFLLYKEPLTSAGKFRLKTIKENLDGFKIAEEDL 616 Query: 626 KQRKEGEILGIKQSGMPKFLIAQ 648 + R G + G++Q+G K IA Sbjct: 617 RLRGPGNLFGLEQAGYLKLKIAN 639 >gi|327457710|gb|EGF04365.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL083PA2] Length = 749 Score = 314 bits (805), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 196/606 (32%), Positives = 315/606 (51%), Gaps = 57/606 (9%) Query: 85 QKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139 ++RRP +++L+DG + + FF + + +F GK+ + + +V Sbjct: 95 RERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 154 Query: 140 HPHYIFHN---------------SQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSR 181 HP ++ + + V + +Y + L + + +++E+ Sbjct: 155 HPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYPQTSKLRTWEIASVESMLLESTPE 214 Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 L LPEW L Q+ PS+ EA++ IH P + + + ERL ++E +A Q+ + Sbjct: 215 LEDTLPEW----LRQEADLPSLWEAYHAIHYPHSVAEADRGA---ERLIWEEAIATQVTM 267 Query: 241 LLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 + R+ ++ + + +G + +PF+PT Q+ + I D+S M R+LQ Sbjct: 268 AVRRRSAERHDAPVCSRRDGGLLVAFEDRLPFTPTVGQDEVSRVIDADLSADRPMHRLLQ 327 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-----------T 348 G+VGSGKT VAL AM V+AG QAV++AP +LAQQHY I + Sbjct: 328 GEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGEGLDAPEI 387 Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408 V ++TG+M A R AL IA G A II+GTH+L + Y + LV+VDEQHRFGV Sbjct: 388 STGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFGV 447 Query: 409 QQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-- 465 +QR LT A PH L++TATPIPRT+ +T GD+++S + E P GR ++T ++ + Sbjct: 448 EQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLPA 507 Query: 466 --NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS--- 517 + + R++ G + + +CP+I + R L + Sbjct: 508 HGSWLTRAWRRIREECDAGHQVFVVCPRINSDDADDVEGGRPPAAAVEELAPQLATGPLA 567 Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + +H R+ +K+ VMD F G ++LI+TTVIEVG+DV +A++++I +A+ FG++ Sbjct: 568 GLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGVS 627 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGR+GRG C+L+ P + RL + + DGF +AE DL QR EG +L Sbjct: 628 QLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNVL 687 Query: 635 GIKQSG 640 G Q+G Sbjct: 688 GSSQAG 693 >gi|313813576|gb|EFS51290.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL025PA1] Length = 749 Score = 314 bits (805), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 201/639 (31%), Positives = 331/639 (51%), Gaps = 58/639 (9%) Query: 85 QKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139 ++RRP +++L+DG + + FF + + +F GK+ + + +V Sbjct: 95 RERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 154 Query: 140 HPHYIFHN---------------SQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSR 181 HP ++ + + V + +Y + L + + +++E+ Sbjct: 155 HPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYPQTSKLRTWEIASVESMLLESTPE 214 Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 L LPEW L Q+ PS+ EA++ IH P + + + ERL ++E +A Q+ + Sbjct: 215 LEDTLPEW----LRQEADLPSLWEAYHAIHYPHSVAEADRGA---ERLIWEEAIATQVTM 267 Query: 241 LLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 + R+ ++ + + +G + +PF+PT Q+ + I D+S M R+LQ Sbjct: 268 AVRRRSAERHDAPVCSRRDGGLLVAFEDRLPFTPTVGQDEVSRVIDADLSADRPMHRLLQ 327 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-----------T 348 G+VGSGKT VAL AM V+AG QAV++AP +LAQQHY I + Sbjct: 328 GEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGEGLDAPEI 387 Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408 V ++TG+M A R AL IA G A II+GTH+L + Y + LV+VDEQHRFGV Sbjct: 388 STGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFGV 447 Query: 409 QQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-- 465 +QR LT A PH L++TATPIPRT+ +T GD+++S + E P GR ++T ++ + Sbjct: 448 EQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLPA 507 Query: 466 --NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS--- 517 + + +R++ G + + +CP+I + R L + Sbjct: 508 HGSWLTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGRPPAAAVEELAPQLATGPLA 567 Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + +H R+ +K+ V+D F G ++LI+TTVIEVG+DV +A++++I +A+ FG++ Sbjct: 568 GLRVEALHSRLDSSEKDLVIDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGVS 627 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGR+GRG C+L+ P + RL + + DGF +AE DL QR EG +L Sbjct: 628 QLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNVL 687 Query: 635 GIKQSGMPKFL-IAQPELHDSLLEIARKDAKHILTQDPD 672 G Q+G L + + H ++ ++ A+ +T+ PD Sbjct: 688 GSSQAGYSSPLRLLRVLDHAEIVTASKGLAERWVTEAPD 726 >gi|224534653|ref|ZP_03675225.1| ATP-dependent DNA helicase RecG [Borrelia spielmanii A14S] gi|224513901|gb|EEF84223.1| ATP-dependent DNA helicase RecG [Borrelia spielmanii A14S] Length = 686 Score = 314 bits (805), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 211/623 (33%), Positives = 331/623 (53%), Gaps = 34/623 (5%) Query: 43 DLLFYHPSSFIDRH---YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LND 96 DL+ + P + DR P S++ ++T+ + H F ++ K+ +ND Sbjct: 34 DLIEFFPVKYEDRQNIQTFPDFSKMKSCDMMTVFTVVG-HKKFGDSSKKNLKLTARSVND 92 Query: 97 GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY---IFHNSQDVNF 153 EI L F R L+NVF +K + K + ++ +F ++ + F Sbjct: 93 EPFEI--LLFNRA--FLENVFKIDKKFYIYSKFTYNDYSGLWSCSNFDSEVFSDNPE-RF 147 Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNP 212 I VYSL GL+ + EAL + I K L++K S S++EA IH P Sbjct: 148 KKILPVYSLTEGLTSKKISLYVREALEYFFKFGQTDIPKFLIEKYSLLSLSEALKEIHFP 207 Query: 213 RKAKDFEWTSPARERLAYDELLAGQI------ALLLMRKQFKKEIGIPINVEGKIAQKIL 266 E A++ L Y E+ Q + +L R++ ++ + ++++ Sbjct: 208 ---SSLEMLEKAKKTLIYREIFLLQFFSRYRSSKVLFREK--------KHLSRDLLERVV 256 Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 ++PF T+ Q +I +I D++ M R+LQGDVGSGKTLVAL++ +EAG Q Sbjct: 257 SSLPFELTEGQRISIDEIFLDLNSSKPMNRLLQGDVGSGKTLVALLSGLPLIEAGYQVAF 316 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 MAP +LA+QHY+ + I V ++TG++ + + +ALE I G + +I+GTHA+F Sbjct: 317 MAPTDLLARQHYDNLSNILSPLNISVTLLTGSLKKRDKEQALESIRSGTSGLIVGTHAIF 376 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 +S ++ +L VI+DEQH+FGV QR +L K +LLM+ATPIPR+ LT GD+++S Sbjct: 377 YESTEFKRLAYVIIDEQHKFGVFQREELKNKGEGVDMLLMSATPIPRSFALTLFGDLEVS 436 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 I P GR PI T + D+V E L+ L +G + Y++ P I ++ + V Sbjct: 437 FIKTLPKGRLPITTYLAKHGNEDKVYEFLRKELLKGHQVYFVYPLISSSEKFELKDVNNM 496 Query: 507 FNSLHEHFTSSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 L E F+ + ++H ++ KE +M +F + +L+AT+VIEVGID +A+ +++ Sbjct: 497 CLKLKEVFSEYVVDMLHSKLPADLKEEIMKNFYSKKVDILVATSVIEVGIDCPNATCMVV 556 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625 E+AE FGL+ LHQ+RGRVGR S LLY PL+ RL +K DGF IAEEDL Sbjct: 557 EHAERFGLSTLHQIRGRVGRSNLQSFFFLLYKEPLTSAGKFRLKTIKENLDGFKIAEEDL 616 Query: 626 KQRKEGEILGIKQSGMPKFLIAQ 648 + R G + G++Q+G K IA Sbjct: 617 RLRGPGNLFGLEQAGYLKLKIAN 639 >gi|314968539|gb|EFT12637.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL037PA1] Length = 749 Score = 314 bits (804), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 196/606 (32%), Positives = 315/606 (51%), Gaps = 57/606 (9%) Query: 85 QKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139 ++RRP +++L+DG + + FF + + +F GK+ + + +V Sbjct: 95 RERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 154 Query: 140 HPHYIFHN---------------SQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSR 181 HP ++ + + V + +Y + L + + +++E+ Sbjct: 155 HPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYPQTSKLRTWEIASVESMLLESTPE 214 Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 L LPEW L Q+ PS+ EA++ IH P + + + ERL ++E +A Q+ + Sbjct: 215 LEDTLPEW----LRQEADLPSLWEAYHAIHYPHSVAEADRGA---ERLIWEEAIATQVTM 267 Query: 241 LLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 + R+ ++ + + +G + +PF+PT Q+ + I D+S M R+LQ Sbjct: 268 AVRRRSAERHDAPVCSRRDGGLLVAFEDRLPFTPTVGQDEVSRVIDADLSADRPMHRLLQ 327 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-----------T 348 G+VGSGKT VAL AM V+AG QAV++AP +LAQQHY I + Sbjct: 328 GEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGEGLDAPEI 387 Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408 V ++TG+M A R AL IA G A II+GTH+L + Y + LV+VDEQHRFGV Sbjct: 388 STGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFGV 447 Query: 409 QQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-- 465 +QR LT A PH L++TATPIPRT+ +T GD+++S + E P GR ++T ++ + Sbjct: 448 EQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLPA 507 Query: 466 --NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS--- 517 + + R++ G + + +CP+I + R L + Sbjct: 508 HGSWLTRAWRRIREECDAGHQVFVVCPRINSDDADDVEGGRPPAAAVEELAPQLATGPLA 567 Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + +H R+ +K+ VMD F G ++LI+TTVIEVG+DV +A++++I +A+ FG++ Sbjct: 568 GLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGVS 627 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGR+GRG C+L+ P + RL + + DGF +AE DL QR EG +L Sbjct: 628 QLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNVL 687 Query: 635 GIKQSG 640 G Q+G Sbjct: 688 GSSQAG 693 >gi|3150215|emb|CAA19182.1| ATP-dependent DNA helicase [Mycobacterium leprae] Length = 592 Score = 314 bits (804), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 195/520 (37%), Positives = 297/520 (57%), Gaps = 42/520 (8%) Query: 153 FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 FP+ A L S D++ + + L L + + + DL K S EA IH Sbjct: 23 FPIYPASTKLQ---SWDIYA-CVRQVLEVLDPVADPLPADLRAKHGLVSEDEALRAIHLA 78 Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG--IPINVEGKIAQKILRNIP 270 D ARERL +DE + Q AL+ R E G P +G +A+ ++R +P Sbjct: 79 ESESD---RRRARERLTFDEAVGLQWALVTRRHGELSESGPSAPPRSDGLMAE-LMRRLP 134 Query: 271 FSPTKSQESAIKDILQDMSQKNRML-RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 F T+ Q ++D+L D R L R+LQG+VGSGKT+VA++AM ++AG Q V++AP Sbjct: 135 FELTEGQRE-VRDVLSDGLAATRPLNRLLQGEVGSGKTIVAVLAMLQMIDAGYQCVLLAP 193 Query: 330 IGILAQQHYEFIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378 +LA QH I+ V ++TG+M A ++K I GQ I Sbjct: 194 TEVLAAQHLLSIRDVLGPLGMGCQLGGAENATQVALLTGSMTMAQKKKVRADIFSGQTGI 253 Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTL 435 +IGTHAL QD+I+++ L +V+VDEQHRFGV+QR +L KA PH+L+MTATPIPRT+ Sbjct: 254 VIGTHALLQDAIEFHNLGMVVVDEQHRFGVEQRDQLRTKARTGIMPHLLVMTATPIPRTV 313 Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEGKKAYWICPQ 491 LT GD+++S + E P GR+PI + +I + +D +R+ ++ G++AY + P+ Sbjct: 314 ALTVYGDLEMSTLRELPRGRQPITSNVIFVKDKPGWLDRAWQRILEEVAAGRQAYVVAPR 373 Query: 492 IEEKKE-----SNFRSVVERFNSLHEHFTSS------IAIIHGRMSDIDKESVMDSFKNG 540 I+E ++ N R E + L+ S +A++HGR+S +K++ M +F+ G Sbjct: 374 IDETEDPQKGGQNSRPS-ETADGLYARLRSGELANVRLALMHGRLSADEKDAAMMAFRAG 432 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L+ T VIEVG+DV +A+I+++ +A+ FG++QLHQLRGR+GRG S C+L Sbjct: 433 EIDVLVCTNVIEVGVDVPNATIMLVMDADRFGISQLHQLRGRIGRGTHPSLCLLASWVSP 492 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 + RL + T DGF +A+ DLK+R+EG++LG QSG Sbjct: 493 GSPAGRRLCAVAETMDGFALADLDLKERREGDVLGRNQSG 532 >gi|282854612|ref|ZP_06263947.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes J139] gi|282582194|gb|EFB87576.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes J139] gi|314923870|gb|EFS87701.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL001PA1] gi|314966073|gb|EFT10172.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL082PA2] gi|314981845|gb|EFT25938.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL110PA3] gi|315090770|gb|EFT62746.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL110PA4] gi|315094922|gb|EFT66898.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL060PA1] gi|315104244|gb|EFT76220.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL050PA2] gi|327328049|gb|EGE69818.1| ATP-dependent DNA helicase RecG [Propionibacterium acnes HL103PA1] Length = 749 Score = 313 bits (803), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 203/639 (31%), Positives = 329/639 (51%), Gaps = 58/639 (9%) Query: 85 QKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139 ++RRP +++L+DG + + FF + + +F GK+ + + +V Sbjct: 95 RERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 154 Query: 140 HPHYIFHN---------------SQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSR 181 HP ++ + + V + +Y + L + + +++E+ Sbjct: 155 HPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYPQTSKLRTWEIASVESMLLESTPE 214 Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 L LPEW L Q+ PS+ EA++ IH+P + + + ERL ++E +A Q + Sbjct: 215 LEDTLPEW----LRQEADLPSLWEAYHAIHHPHSVAEADRGT---ERLIWEEAIATQATM 267 Query: 241 LLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 + R+ ++ + + +G + +PF+PT Q+ + I D+S M R+LQ Sbjct: 268 AVRRRSAERHDAPVCSRRDGGLLAAFEDRLPFTPTVGQDEVSRAIDADLSADRPMHRLLQ 327 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-----------T 348 G+VGSGKT VAL AM V+AG QAV++AP +LAQQHY I + Sbjct: 328 GEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGGGLDAPEI 387 Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408 V ++TG++ A R AL IA G A II+GTH+L + Y + LV+VDEQHRFGV Sbjct: 388 STGVALLTGSVKAAGTRAALADIASGVAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFGV 447 Query: 409 QQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-- 465 +QR LT A PH L++TATPIPRT+ +T GD+++S + E P GR ++T ++ + Sbjct: 448 EQRSVLTTGDGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLPA 507 Query: 466 --NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS--- 517 + + +R++ G + + +CP+I + R L + Sbjct: 508 HGSWLTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGRPPAAAVEELAPQLATGPLA 567 Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + +H R+ +K+ VMD F G ++LI+TTVIEVG+DV +A++++I +A+ FG++ Sbjct: 568 GLRVEALHSRLDSSEKDLVMDRFIKGELQVLISTTVIEVGVDVPNATMMVIMDADRFGVS 627 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGR+GRG C+L+ P + RL + + DGF +AE DL QR EG +L Sbjct: 628 QLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNVL 687 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKD-AKHILTQDPD 672 G Q+G L L + + A KD A+ + + PD Sbjct: 688 GSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVAEAPD 726 >gi|118469068|ref|YP_886743.1| ATP-dependent DNA helicase RecG [Mycobacterium smegmatis str. MC2 155] gi|118170355|gb|ABK71251.1| ATP-dependent DNA helicase RecG [Mycobacterium smegmatis str. MC2 155] Length = 753 Score = 313 bits (803), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 205/653 (31%), Positives = 344/653 (52%), Gaps = 79/653 (12%) Query: 91 KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD 150 ++ L D ++T FF + + G ++ ++G++K ++ + + HP ++ S Sbjct: 94 RVKLGDHKPKVTATFF--NANWMIDELKVGTRLMLSGEVKYFRDTVQLNHPAFLVLESPS 151 Query: 151 VN-----------------------------FPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 FP+ A + S D+++ I + L+ Sbjct: 152 GRTIGTKSLKTIAEASGASGEDMLAEFEKEFFPIYPASAKMQ---SWDIYR-CIRQVLAV 207 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 L +P+ + K +Q++ S +A IH A + ARERL YDE + Q L+ Sbjct: 208 LDPIPDPLPKSFVQQRGLMSEDQALRAIH---LAANSTERDRARERLTYDEAIGLQWGLV 264 Query: 242 LMRKQFKKEIG--IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 R G P+ V+G +A + +PF T Q + I +++ M R+LQ Sbjct: 265 ARRYGELAASGPSAPLRVDGLVA-ALRERLPFELTAGQREVLDVISGELASTRPMNRMLQ 323 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII-------- 351 G+VGSGKT+V+++AM V+AG Q ++AP +LA QH ++ + Sbjct: 324 GEVGSGKTIVSVLAMLQMVDAGYQCALLAPTEVLATQHARSVRDVLGPLAMAGELGGDEH 383 Query: 352 ---VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408 V ++TG+M +R + +A G A I+IGTHAL QD++++ L +V+VDEQHRFGV Sbjct: 384 GTRVALLTGSMTPQQKRAVRDEVASGAAGIVIGTHALLQDAVEFDNLGMVVVDEQHRFGV 443 Query: 409 QQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465 +QR L KA PH+L+MTATPIPRT+ LT GD++ S + E P GR+PI + I + Sbjct: 444 EQRDTLRAKAPEGLTPHLLVMTATPIPRTVALTVYGDLETSTLRELPRGRQPITSNTIFV 503 Query: 466 NR----IDEVIERLKVVLSEGKKAYWICPQIEEK------KESNFR-------SVVERFN 508 ++ +D R++ ++ G++AY + +I+E KE+ R +VVE + Sbjct: 504 SQKPAWLDRAWARIREEVAAGRQAYVVASRIDENDKPSGGKENEGRQAGPPPITVVELYE 563 Query: 509 SLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 L + ++HGR+S +K+ VM F+ G +L+ TTVIEVG+DV +++++++ Sbjct: 564 RLRNGPLEGLRLGLMHGRLSGDEKDEVMSRFRAGEIDVLVCTTVIEVGVDVPNSTVMVVM 623 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626 +A+ FG++QLHQLRGR+GRG+ S C+L P + + R+ + +T DGF +A+ DL+ Sbjct: 624 DADRFGISQLHQLRGRIGRGQHPSLCLLATRMPENSKAGERIKAVASTLDGFELADLDLE 683 Query: 627 QRKEGEILGIKQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676 +R+EG++LG+ QSG +FL + L ++ AR + QDP+ T + Sbjct: 684 ERREGDVLGLNQSGRTINLRFLSLRDHLE--VITDARAFCETRYEQDPNDTGM 734 >gi|309806866|ref|ZP_07700853.1| putative ATP-dependent DNA helicase RecG [Lactobacillus iners LactinV 03V1-b] gi|308166732|gb|EFO68924.1| putative ATP-dependent DNA helicase RecG [Lactobacillus iners LactinV 03V1-b] Length = 489 Score = 313 bits (802), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 176/486 (36%), Positives = 284/486 (58%), Gaps = 9/486 (1%) Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILR 267 +H P KD + A+ + E Q+ L L+ +K GI + ++ Sbjct: 11 MHQP---KDLQQVKIAQRTAIFLEFFVFQLQLSQLLYANDQKNNGIAKKYDSSAINELKE 67 Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 +I F + Q AI +IL D++ RM R+LQGDVGSGKT+VA+ A+ A + AG Q +M Sbjct: 68 SINFQLSDDQIQAINEILADLASAKRMNRLLQGDVGSGKTIVAVFAIFACITAGYQVALM 127 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQH I + + ++T + +++ + G +++IGTHA+ Q Sbjct: 128 VPTEILAQQHMNKIVAILEPLGVRCALLTSSTKLNEKKEIYRELKDGIINLVIGTHAIIQ 187 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D + + KL LVI+DEQHRFGV QR +L K +L M+ATPIPRTL L+ G+ +S+ Sbjct: 188 DPVIFKKLGLVIIDEQHRFGVDQRKQLLNKGKMVDILAMSATPIPRTLALSVYGENSVSE 247 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 I + P GRK + + I + + +++ + L +G + Y + P I E + + ++ + Sbjct: 248 IHQMPLGRKKVISYWITSDSLRKLLTLMNEQLEQGFQIYVVAPLIAESDKLHLKNAETLY 307 Query: 508 NSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 + +F S +A++HG+M+ K +MD+F +G+ K+LI T+VIEVG+DV +A+++II Sbjct: 308 KKMALYFGSDRVALLHGKMASSQKSDIMDAFIHGSIKILITTSVIEVGVDVANANMMIIF 367 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626 NA+HFGL+QLHQLRGR+GRG S CI + P + ++ RL ++ +DGF +A EDLK Sbjct: 368 NADHFGLSQLHQLRGRIGRGTTQSYCIFVSDPK-TDSAKKRLKIISTCDDGFALAREDLK 426 Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686 R EG+I G QSG+P+F + + ++ A+K++K ++ Q+P+L G+ L Sbjct: 427 LRGEGDIFGQAQSGIPQFKLGDIINNYNIFTTAQKESKILVHQNPELV---GEEYDFLKL 483 Query: 687 LYQYNE 692 L +Y++ Sbjct: 484 LMEYDD 489 >gi|255570116|ref|XP_002526020.1| conserved hypothetical protein [Ricinus communis] gi|223534667|gb|EEF36360.1| conserved hypothetical protein [Ricinus communis] Length = 983 Score = 313 bits (801), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 205/609 (33%), Positives = 322/609 (52%), Gaps = 61/609 (10%) Query: 120 GRKITVTGKIKKL--KNRIIMVHPHYIFHNSQDVNFPLIEA----VYSLPTGLSVDLFKK 173 G + ++GK+K + K+ M + DV+ E +Y GL+ D + Sbjct: 360 GDVVCISGKVKTMSTKDHYEMREYNIDVLKDDDVSSLHPEGRPYPIYPSKGGLNPDFLRD 419 Query: 174 IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233 II AL L + I K+++Q + +A+ IH PR + E AR RL +DE Sbjct: 420 IIARALQALGPGIDPIPKEIIQDFRLLHLHDAYTGIHQPR---NVEEADSARRRLIFDEF 476 Query: 234 LAGQIALL---------------LMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277 Q+ L L+ K K E+ + + + +K L+ +P+S T SQ Sbjct: 477 FYLQLGRLFQMLEGLSTRTEKDGLLLKYRKPELNALYVENWSSLTKKFLKALPYSLTSSQ 536 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 +A+ +I+ D+ + M R+LQGDVG GKT+VA +A + +G QA M P +LA QH Sbjct: 537 LNAVSEIIWDLKRPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLAIQH 596 Query: 338 YEFIKKYTQN-----TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392 YE + K + ++ + ++TG+ P R + + G ++IGTH+L +++++ Sbjct: 597 YEHLLKLLETMEENQSKPSIALLTGSTPLKQSRMIRKDLQSGDISMVIGTHSLISENVEF 656 Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKA-----------------------TAPHVLLMTAT 429 L + +VDEQHRFGV QR + K APH+L M+AT Sbjct: 657 SALRIAVVDEQHRFGVIQRGQFNSKLYYTSLRSRMAVTTSIGSSKGDVYMAPHILAMSAT 716 Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYW 487 PIPRTL L GD+ +++IT+ P GR P++T II N +++ + + L G + Y Sbjct: 717 PIPRTLALALYGDMSLTQITDLPPGRIPVETHIIEGNSQGFEDIYKMILDELEAGGRVYL 776 Query: 488 ICPQIEEKKE-SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545 + P IE+ ++ R+ ++ + F + ++HGRM +K+ + F++G ++L Sbjct: 777 VYPVIEQSEQLPQLRAASADLQAISDRFQRFNCGLLHGRMKSDEKDEALRRFRSGETQIL 836 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 ++T VIEVG+DV DAS++++ NAE FG+AQLHQLRGRVGRGE S CILL + +S Sbjct: 837 LSTQVIEVGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGERKSKCILLGS---TSSSL 893 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAK 664 RL VL+ + DGF +A DL R G++LG KQSG +P F IA+ E+ +L+ A A Sbjct: 894 NRLKVLEKSSDGFHLANADLLLRGPGDLLGKKQSGHLPDFPIARLEIVGKILQEAHDAAL 953 Query: 665 HILTQDPDL 673 +L DL Sbjct: 954 KVLGDSHDL 962 >gi|319440509|ref|ZP_07989665.1| ATP-dependent DNA helicase [Corynebacterium variabile DSM 44702] Length = 745 Score = 313 bits (801), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 187/513 (36%), Positives = 285/513 (55%), Gaps = 33/513 (6%) Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 E L R+P P+W + D F A A +H P + + AR RL ++E L Sbjct: 225 EMLPRVPGAPDWPQIDGAPVLDF---ATALRHVHRPPE----DGPDAARTRLKFNEALGL 277 Query: 237 QIALLLMRKQFKKEIG---IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 Q+ + L R +P+ + + +L +P+ T Q+ A+ I M+ Sbjct: 278 QLVMALRRADSTARHARPVVPVAPDSRYT-ALLDRLPYDLTAPQQDALSTIGDAMAGTTD 336 Query: 294 ----MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ--- 346 M +LQGDVGSGKT+VAL+AM V++G Q +AP +LA QH + + Sbjct: 337 TVTPMSMLLQGDVGSGKTVVALLAMLRVVDSGAQCAFLAPTEVLAVQHAGTLTGLLERID 396 Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 Q+ V ++TG+M A R+ AL I G + I++GTHA+ QDS+ ++ L +V+VDEQHRF Sbjct: 397 GRQVTVTLLTGSMTAAERKAALLDIISGTSDIVVGTHAIIQDSVDFFDLGMVVVDEQHRF 456 Query: 407 GVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463 GV+QR KL + A PH+L+MTATPIPRT+ +T GD+ + +T P+GR + T ++ Sbjct: 457 GVRQRDKLRENAPVERTPHLLVMTATPIPRTVAMTMFGDLSVCTLTGSPSGRGKVDTFVV 516 Query: 464 PI---NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIA 519 P N +D V ++ ++ G +A+ + P+I+ E V R S T I Sbjct: 517 PTFKRNWVDRVFAVIREQVASGHRAFIVVPRID--GEGGVDDVATRLES--GVLTGLRIG 572 Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579 +HGRM + K VM +G +L+ATTV+EVG+D+ +A+++++ +AE+FG++QLHQL Sbjct: 573 RLHGRMDN--KAEVMADLASGEIDVLVATTVVEVGVDIPEATVMVVVDAENFGVSQLHQL 630 Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639 RGRVGRG + S C L P + S RL + T DGF +AE DL+ R EG++LG QS Sbjct: 631 RGRVGRGADNSWCFLCTAVPEEEASSRRLQSIAATSDGFALAELDLRTRTEGDVLGESQS 690 Query: 640 GMPKFLIAQPELHDS--LLEIARKDAKHILTQD 670 G + L D ++E AR+ A+ ++ D Sbjct: 691 GSRARRVTLLSLADDAVVIEEARRYAEDLVGYD 723 >gi|239917402|ref|YP_002956960.1| ATP-dependent DNA helicase RecG [Micrococcus luteus NCTC 2665] gi|281414113|ref|ZP_06245855.1| ATP-dependent DNA helicase RecG [Micrococcus luteus NCTC 2665] gi|239838609|gb|ACS30406.1| ATP-dependent DNA helicase RecG [Micrococcus luteus NCTC 2665] Length = 730 Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 191/553 (34%), Positives = 297/553 (53%), Gaps = 37/553 (6%) Query: 127 GKIKKLKNRIIMVHPHYIFHNSQ------DVN-FPLIEAVYSLPTGLSVDLFKKIIVEA- 178 G+ + + RI + +P + + DV PL A LP+ +++ Sbjct: 125 GRTTEYRGRITLNNPDFALLDDDVTPGEVDVRPVPLYRATGKLPSWTVRSAVARVLETVD 184 Query: 179 LSRLP-VLPEWIEKD----LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233 L R+P +L E I + L P A+A+ +H P D T PAR LA E Sbjct: 185 LGRIPELLTERIRAEAAAALDLDVPLPDTAQAYRDLHAP---HDVAATGPARTALALREA 241 Query: 234 LAGQIALLLMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292 L Q AL R + + P G + + + +PF+ T Q + + + +++++ Sbjct: 242 LLVQAALAWRRDRERAVPATPRPPRAGGLLEALDARLPFALTPGQVAVGEQLSAELAREA 301 Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT------- 345 M R+LQGDVG+GKTLVAL AM V+AGGQA ++AP +LA QH+ + + Sbjct: 302 PMSRLLQGDVGAGKTLVALRAMLQVVDAGGQAALVAPTEVLAAQHHRALLRLMGPLAEAG 361 Query: 346 -----QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400 V ++TG++ A RR+AL +A G+A I +GTHAL + + + +L L +V Sbjct: 362 TLGAGDGPATRVVLVTGSLKTAARREALLALASGEAGIAVGTHALLSEKVGFAELALAVV 421 Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460 DEQHRFGV QR L + H+L+M+ATPIPR++ +T GD+D+S + P+GR+P+ T Sbjct: 422 DEQHRFGVDQREALRRANPGTHLLVMSATPIPRSVAMTVFGDLDLSVLEGLPSGRQPVTT 481 Query: 461 VIIPINRIDEVIERLKVVLSE----GKKAYWICPQIE----EKKESNFRSVVERFNSLHE 512 + + VI R+ +++E G +A+ +CP+I+ + +N + R L Sbjct: 482 HVARMAHGPRVIGRVWELIAEHVAAGHQAFVVCPRIDPDDTDPGHANVEEMTPRLRGLPA 541 Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 I +HGRM ++++ M +F G +L+ATTV+EVG+DV +A+++ + +A+ FG Sbjct: 542 LAGLRIDAVHGRMDQAEQDAAMQAFARGETDVLVATTVVEVGVDVPNATVMAVLDADDFG 601 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 L+ LHQLRGRVGRG + C+L P S RL VL +DG IA+EDL QR G+ Sbjct: 602 LSTLHQLRGRVGRGPGAAVCLLATRLPDGYPSLRRLEVLAQEQDGMRIAQEDLAQRGVGD 661 Query: 633 ILGIKQSGMPKFL 645 +LG QSG+ L Sbjct: 662 VLGAAQSGLASGL 674 >gi|308234564|ref|ZP_07665301.1| ATP-dependent DNA helicase RecG [Atopobium vaginae DSM 15829] gi|328944162|ref|ZP_08241627.1| DNA helicase RecG [Atopobium vaginae DSM 15829] gi|327492131|gb|EGF23905.1| DNA helicase RecG [Atopobium vaginae DSM 15829] Length = 749 Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 212/692 (30%), Positives = 334/692 (48%), Gaps = 63/692 (9%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY----KILLNDGT 98 DL+ P ++D I E + VTI+ I + L++ RP+ ++ + D Sbjct: 48 DLILRIPRRYLDFSRHVSILEAAVNDTVTISCVIDR---INLKRPRPHLSIVEMYVTDTI 104 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV------- 151 G + + FF + L + G + + GK++ M P ++ D Sbjct: 105 GIMRISFF--RQPWLAKAYHVGDVVALLGKVEYSYGFKCMNSPFIELIHAADARPTDGHA 162 Query: 152 --------------------NFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188 N L I VY+L GLS +++II L ++ L + Sbjct: 163 ADTHAADAHAQDKSALELLPNARLDMHILPVYALCDGLSAAWYRRIIKICLHKILPLVDC 222 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248 I L + + A IH P AR R AY+EL Q+AL + Sbjct: 223 IPSVYLARNRLMGYSTAIQQIHMP---TSMSAQDAARRRFAYNELFFLQLAL--RARTSV 277 Query: 249 KEIGIPIN--VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 ++I PI + G + + +PF + Q+SA D+L DM K M R+L GDVG+GK Sbjct: 278 EDIQDPIQHCINGSHLKNFYKALPFELSAEQQSAAHDLLHDMQAKTCMNRLLLGDVGTGK 337 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366 T+V + A + QA ++AP +LAQQ+ E I I ++T ++ R Sbjct: 338 TVVCALGFAVCADTFTQAAMLAPTSVLAQQYAEKIGTLLTKLSISWALLTSATTKSERAD 397 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426 L ++ G +I GT +L D +Q++KL +++DEQHRFGV QRL L QK+ +L M Sbjct: 398 ILSQLQTGSVQVIFGTTSLLSDDVQFHKLSYIVIDEQHRFGVHQRLALRQKSPFADLLAM 457 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486 +ATPIPRTL L+ GD+ S I KP + T ++ + + + + +G++AY Sbjct: 458 SATPIPRTLALSFYGDLTCSFIKHKPFSTAKVTTKVLANENVSVAYDAVAACIEQGQQAY 517 Query: 487 WICPQIEEKKES--------NFRSVVERFNSLHEHFTS---------SIAIIHGRMSDID 529 ICP I+ + N +S + +S + F S I ++ GRM + Sbjct: 518 IICPLIDNQDARTTVDDIAPNAQSSAQTLHSAQQTFESLKRSSFSAYRIGLLTGRMDSDE 577 Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589 K+ VM F+ +L+ATT++EVG+DV A +II +A+ FGLA LHQLRGRVGRG Sbjct: 578 KDRVMSQFRAHKLDVLVATTIVEVGVDVPRACAMIILDADRFGLATLHQLRGRVGRGSLA 637 Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649 + L+ + RL +L+NT DGF ++++DL+ R+EG+ILG +QSG + Sbjct: 638 AQVYLVTASKKHSLARRRLDILENTFDGFELSQKDLELRREGDILGYRQSGTLTLRVCDM 697 Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681 L+E A +D +L DPDL+ V+ +++ Sbjct: 698 VRDMDLIEAAHRDVGELLDGDPDLSQVQHRAL 729 >gi|41409107|ref|NP_961943.1| hypothetical protein MAP3009c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397927|gb|AAS05557.1| RecG [Mycobacterium avium subsp. paratuberculosis K-10] Length = 738 Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 202/614 (32%), Positives = 325/614 (52%), Gaps = 69/614 (11%) Query: 86 KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF 145 K+ ++I L G ++T FF LK EG K+ ++G++ KN + + HP ++ Sbjct: 79 KKVCHRITLGAGRNKVTATFF--NANYLKKGLTEGTKVMLSGEVGFFKNVMQLTHPAFLI 136 Query: 146 HNSQDVN-----------------------------FPLIEAVYSLPTGLSVDLFKKIIV 176 +S D FP+ A + S D+F + + Sbjct: 137 LDSPDGRNKGTRSLKNIANASGASGEAVLDAYERHFFPIYPASTKMQ---SWDIFSCVRL 193 Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 L L +P+ + + L K +A IH A++ ARERL +DE + Sbjct: 194 -VLDVLDPVPDPLPEPLRAKFDLVCEDQALRDIH---LAENEARRQRARERLTFDEAVGL 249 Query: 237 QIALLLMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q AL+ R E G P +A ++LR +PF T Q + D+L D R L Sbjct: 250 QWALVARRHGELSESGPPAPPRPDGLAAELLRRLPFELTAGQREVL-DVLSDGLASTRPL 308 Query: 296 -RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY---------- 344 R+LQG+VGSGKT+V+++AM V+AG Q ++AP +LA QH I+ Sbjct: 309 NRLLQGEVGSGKTIVSVLAMLQMVDAGYQCALLAPTEVLAAQHLRSIRDVLGPLAMAGQL 368 Query: 345 -TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403 + + +++G+M A +++ + +A GQ I++GTHAL QD+++++ L +V+VDEQ Sbjct: 369 GGADNATRLALLSGSMTAAQKKQVRDEVAGGQVGIVVGTHALLQDAVEFHNLGMVVVDEQ 428 Query: 404 HRFGVQQRLKLTQKA---TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460 HRFGV+QR +L KA PH+L+MTATPIPRT+ LT GD++ S + E P GR+PI + Sbjct: 429 HRFGVEQRDRLRAKARPGVTPHLLVMTATPIPRTVALTVYGDLETSTLRELPRGRQPITS 488 Query: 461 VIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS----VVERFNSLHE 512 +I + + R+ ++ G++AY + +I+E + E L+ Sbjct: 489 NVIFVKDKPAWLGRAWRRIGEEVAAGRQAYVVAARIDESDDDGAADQNAKAPETAEGLYA 548 Query: 513 HFTSS------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 S + ++HGR+S +K++VM +F+ G +L+ TTVIEVG+DV +A+++++ Sbjct: 549 RLRSQELAQLRLGLMHGRLSAEEKDAVMAAFRAGDIDVLVCTTVIEVGVDVPNATVMLVM 608 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626 +A+ FG++QLHQLRGR+GRGE S C+ + RL+ + T DGF +A+ DLK Sbjct: 609 DADRFGISQLHQLRGRIGRGEHPSLCLFASWAAPDSPAGRRLTAVAETMDGFALADLDLK 668 Query: 627 QRKEGEILGIKQSG 640 +R+EG++LG QSG Sbjct: 669 ERREGDVLGRNQSG 682 >gi|330873209|gb|EGH07358.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. glycinea str. race 4] Length = 344 Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 153/326 (46%), Positives = 215/326 (65%), Gaps = 6/326 (1%) Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 + G + R +LE+IA G +++GTHALFQD +Q+ L LVI+DEQHRFGVQQRL L Sbjct: 4 LAGKLKGKARATSLEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLAL 62 Query: 415 TQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470 +K PH L+MTATPIPRTL +++ D+D S + E P GR P+ TV++ +R E Sbjct: 63 RKKGVGGLMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLE 122 Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDID 529 V+ER++ +EG++AYW+C IEE +E ++ + L + +IHGRM + Sbjct: 123 VVERVRAACAEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGEVRVGLIHGRMKPAE 182 Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589 K ++M FK G +LL+ATTVIEVG+DV ++S++IIEN E GLAQLHQLRGRVGRG + Sbjct: 183 KAAIMAEFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAV 242 Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649 S C+LLYHPPLS+ RL +++ T DGF+IAE+DL+ R GE+LG +Q+G+ +F +A Sbjct: 243 SHCVLLYHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADL 302 Query: 650 ELHDSLLEIARKDAKHILTQDPDLTS 675 LL R A+ +L + P S Sbjct: 303 MRDADLLPAVRDAAQALLERWPQHVS 328 >gi|229820092|ref|YP_002881618.1| DEAD/DEAH box helicase [Beutenbergia cavernae DSM 12333] gi|229566005|gb|ACQ79856.1| DEAD/DEAH box helicase domain protein [Beutenbergia cavernae DSM 12333] Length = 748 Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 225/688 (32%), Positives = 352/688 (51%), Gaps = 65/688 (9%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILL-----NDG 97 DLL ++P + + +SE++ VTI ++Q SS +++R K ++ DG Sbjct: 44 DLLSHYPRRYAEPGRLTTMSELTLGEHVTI---VAQVSSVGVRRRNRGKGMIVEGVITDG 100 Query: 98 TGEITLLFFYRKTEMLKNVFFE---GRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF 153 ++L+FF M + + G TG + + + ++ + HP Y + D Sbjct: 101 VSRMSLVFFAPYAGMAHTIESQLPVGATALFTGTVNRYQGKLQLAHPSYRAIEDPDDEAE 160 Query: 154 PLIEAVYSLP---TGLSVDLFK-----KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEA 205 L++A +P ++D K + +++ L R V P+ + ++ + + A Sbjct: 161 ALVDASKPIPIYPASAAIDSLKIQAAIRTVLDPLRREDV-PDPVPDEVRRAQQLLGRFAA 219 Query: 206 FNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE--GKIAQ 263 +H P E A+ L Y+E Q AL R + E G +A Sbjct: 220 LQQVHVPVT---MEEAYRAQAALRYEEAFVLQAALARRRAEAAAEPATARPAAAVGLLAA 276 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 R +PF+ T Q + +++ M R+LQG+VGSGKT+VAL AM V+AGGQ Sbjct: 277 FDAR-LPFTLTDGQRDVGVVLADELAASVPMQRLLQGEVGSGKTVVALRAMLQVVDAGGQ 335 Query: 324 AVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIA 372 A ++AP +LA QH I + V ++TG+ A RR+AL A Sbjct: 336 AALLAPTEVLAAQHARTIAAMLGPLAEGGMLTGADGATRVALLTGSQSAAQRRQALAEAA 395 Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPI 431 G A I++GTHAL Q+ +Q+ L LV+VDEQHRFGV+QR L K T+PH+L+MTATPI Sbjct: 396 SGAAGIVVGTHALIQEHVQFADLGLVVVDEQHRFGVEQRDALRAKGRTSPHLLVMTATPI 455 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWI 488 PRT+ +T GD++ S +TE PAGR + T ++P + + R+ ++ G +A+ + Sbjct: 456 PRTVAMTIFGDLESSTLTEIPAGRAGVSTHVVPADNAAWVARTWSRIAEEVAGGHRAFVV 515 Query: 489 CPQIEE-------------KKESNFRS---------VVERFNSLHEHFTSSIAIIHGRMS 526 CP+I + ES S VV + I ++HGR++ Sbjct: 516 CPRISDTLTEPADVVDHLADDESGPESRHSIAAVEDVVAQLRGEPALAGVEIGMLHGRLT 575 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 K++ M F +G +L+ TTVIEVG+DV +A+++ + +A+ FGL+QLHQLRGRVGRG Sbjct: 576 PDVKDAAMADFSSGKVPVLVTTTVIEVGVDVPEATVMAVLDADRFGLSQLHQLRGRVGRG 635 Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646 + + C+LL H + RL+ L T DGF +AE DL+ R+EG++LG QSG L Sbjct: 636 SDPAVCLLLTHADPETPTGKRLAALAATTDGFELAEVDLRDRREGDVLGAAQSGRTNSLK 695 Query: 647 AQPELHD-SLLEIARKDAKHILTQDPDL 673 + D ++E AR DA+ ++T DP L Sbjct: 696 LLRVVQDRRVIERARTDARAVVTADPSL 723 >gi|118462797|ref|YP_882989.1| ATP-dependent DNA helicase RecG [Mycobacterium avium 104] gi|118164084|gb|ABK64981.1| ATP-dependent DNA helicase RecG [Mycobacterium avium 104] Length = 738 Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 202/614 (32%), Positives = 324/614 (52%), Gaps = 69/614 (11%) Query: 86 KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF 145 K+ ++I L G ++T FF LK EG K+ ++G++ KN + + HP ++ Sbjct: 79 KKVCHRITLGAGRNKVTATFF--NANYLKKGLTEGTKVMLSGEVGFFKNVMQLTHPAFLI 136 Query: 146 HNSQDVN-----------------------------FPLIEAVYSLPTGLSVDLFKKIIV 176 +S D FP+ A + S D+F + + Sbjct: 137 LDSPDGRNKGTRSLMNIANASGASGEEVLDAYERHFFPIYPASTKMQ---SWDIFSCVRL 193 Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 L L +P+ + + L K +A IH A+ ARERL +DE + Sbjct: 194 -VLDVLDPVPDPLPEPLRAKFDLVCEDQALRDIH---LAESEARRQRARERLTFDEAVGL 249 Query: 237 QIALLLMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q AL+ R E G P +A ++LR +PF T Q + D+L D R L Sbjct: 250 QWALVARRHGELSESGPPAPPRPDGLAAELLRRLPFELTAGQREVL-DVLSDGLASTRPL 308 Query: 296 -RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY---------- 344 R+LQG+VGSGKT+V+++AM V+AG Q ++AP +LA QH I+ Sbjct: 309 NRLLQGEVGSGKTIVSVLAMLQMVDAGYQCALLAPTEVLAAQHLRSIRDVLGPLAMAGQL 368 Query: 345 -TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403 + + +++G+M A +++ + +A GQ I++GTHAL QD+++++ L +V+VDEQ Sbjct: 369 GGADNATRLALLSGSMTAAQKKQVRDEVAGGQVGIVVGTHALLQDAVEFHNLGMVVVDEQ 428 Query: 404 HRFGVQQRLKLTQKA---TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460 HRFGV+QR +L KA PH+L+MTATPIPRT+ LT GD++ S + E P GR+PI + Sbjct: 429 HRFGVEQRDRLRAKARPGVTPHLLVMTATPIPRTVALTVYGDLETSTLRELPRGRQPITS 488 Query: 461 VIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS----VVERFNSLHE 512 +I + + R+ ++ G++AY + +I+E + E L+ Sbjct: 489 NVIFVKDKPAWLGRAWRRIGEEVAAGRQAYVVAARIDESDDDGAADQNAKAPETAEGLYA 548 Query: 513 HFTSS------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 S + ++HGR+S +K++VM +F+ G +L+ TTVIEVG+DV +A+++++ Sbjct: 549 RLRSQELAQLRLGLMHGRLSAEEKDAVMAAFRAGDIDVLVCTTVIEVGVDVPNATVMLVM 608 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626 +A+ FG++QLHQLRGR+GRGE S C+ + RL+ + T DGF +A+ DLK Sbjct: 609 DADRFGISQLHQLRGRIGRGEHPSLCLFASWAAPDSPAGRRLTAVAETMDGFALADLDLK 668 Query: 627 QRKEGEILGIKQSG 640 +R+EG++LG QSG Sbjct: 669 ERREGDVLGRNQSG 682 >gi|223888856|ref|ZP_03623447.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 64b] gi|223885672|gb|EEF56771.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 64b] Length = 686 Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 207/620 (33%), Positives = 329/620 (53%), Gaps = 28/620 (4%) Query: 43 DLLFYHPSSFIDRH---YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99 DL+ + P + DR P S++ ++T+ + H F ++ K+ + Sbjct: 34 DLIEFFPVKYEDRQNIQTFPDFSKVKSCDMMTVFTVLG-HKKFGDSSKKNLKLTVKSINE 92 Query: 100 E-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI--FHNSQDVNFPLI 156 E +L F R L+NVF +K + K + ++ ++ + F I Sbjct: 93 EPFEILLFNRA--FLENVFKIDKKFYIYSKFTYNDYSGLWSCSNFDSEVYSDKPERFKKI 150 Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNPRKA 215 VYSL GL+ + EAL + I + L++K S S+++A IH P Sbjct: 151 LPVYSLTEGLTSKKISLYVKEALEYFFKFGQTDIPRFLIEKYSLLSLSDALKEIHFP--- 207 Query: 216 KDFEWTSPARERLAYDELLAGQI------ALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269 E A++ L Y E+ Q + +L R+ KK++ + +K++ ++ Sbjct: 208 SSLEMLEKAKKTLIYREIFLLQFFSRYRSSKILFRE--KKDLS------KDLLEKVVSSL 259 Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T+ Q+ +I +I D++ M R+LQGDVGSGKTLVAL++ +EAG Q MAP Sbjct: 260 PFELTEDQKISINEIFFDLNSSKPMNRLLQGDVGSGKTLVALLSGLPLIEAGYQVAFMAP 319 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHY+ + I + ++TG++ + + +ALE I +G + +I+GTHA+F +S Sbjct: 320 TDLLARQHYDNLSNILAPFNISMTLLTGSLRKKDKEQALESIRNGTSGLIVGTHAIFYES 379 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 ++ +L VI+DEQH+FGV QR +L K +LLM+ATPIPR+ LT GD+++S I Sbjct: 380 TEFKRLAYVIIDEQHKFGVVQREELKNKGEGVDMLLMSATPIPRSFALTLFGDLEVSFIK 439 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P GR PI T + D+V E L+ L +G + Y++ P I ++ + V Sbjct: 440 TLPKGRLPITTYLARHGNEDKVYEFLRKELLKGHQVYFVYPLISSSEKFELKDVNNMCLK 499 Query: 510 LHEHFTSSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 L E F + ++H ++ KE +M +F + +L+AT+VIEVGID +A+ +++E+A Sbjct: 500 LKEVFGEYVVDMLHSKLPSDLKEEIMKNFYSKKVDILVATSVIEVGIDCPNATCMVVEHA 559 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628 E FGL+ LHQ+RGRVGR S LLY PL+ RL +K DGF IAEEDL+ R Sbjct: 560 ERFGLSTLHQIRGRVGRSNLQSFFFLLYKEPLTSAGKFRLKTIKENLDGFKIAEEDLRLR 619 Query: 629 KEGEILGIKQSGMPKFLIAQ 648 G + G++Q+G K IA Sbjct: 620 GPGNLFGLEQAGYLKLKIAN 639 >gi|226321047|ref|ZP_03796590.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 29805] gi|226233571|gb|EEH32309.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 29805] Length = 686 Score = 311 bits (796), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 207/620 (33%), Positives = 329/620 (53%), Gaps = 28/620 (4%) Query: 43 DLLFYHPSSFIDRH---YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99 DL+ + P + DR P S++ ++T+ + H F ++ K+ + Sbjct: 34 DLIEFFPVKYEDRQNIQTFPDFSKVKSCDMMTVFTVLG-HKKFGDSSKKNLKLTVKSINE 92 Query: 100 E-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI--FHNSQDVNFPLI 156 E +L F R L+NVF +K + K + ++ ++ + F I Sbjct: 93 EPFEILLFNRA--FLENVFKIDKKFYIYSKFTYNDYSGLWSCSNFDSEVYSDKPERFKKI 150 Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNPRKA 215 VYSL GL+ + EAL + I + L++K S S+++A IH P Sbjct: 151 LPVYSLTEGLTSKKISLYVKEALEYFFKFGQTDIPRFLIEKYSLLSLSDALKEIHFP--- 207 Query: 216 KDFEWTSPARERLAYDELLAGQI------ALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269 E A++ L Y E+ Q + +L R+ KK++ + +K++ ++ Sbjct: 208 SSLEMLEKAKKTLIYREIFLLQFFSRYRSSKILFRE--KKDLS------KDLLEKVVSSL 259 Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T+ Q+ +I +I D++ M R+LQGDVGSGKTLVAL++ +EAG Q MAP Sbjct: 260 PFELTEDQKISIDEIFFDLNSSKPMNRLLQGDVGSGKTLVALLSGLPLIEAGYQVAFMAP 319 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHY+ + I + ++TG++ + + +ALE I +G + +I+GTHA+F +S Sbjct: 320 TDLLARQHYDNLSNILAPFNISMTLLTGSLRKKDKEQALESIRNGTSGLIVGTHAIFYES 379 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 ++ +L VI+DEQH+FGV QR +L K +LLM+ATPIPR+ LT GD+++S I Sbjct: 380 TEFKRLAYVIIDEQHKFGVVQREELKNKGEGVDMLLMSATPIPRSFALTLFGDLEVSFIK 439 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P GR PI T + D+V E L+ L +G + Y++ P I ++ + V Sbjct: 440 TLPKGRLPITTYLARHGNEDKVYEFLRKELLKGHQVYFVYPLISSSEKFELKDVNNMCLK 499 Query: 510 LHEHFTSSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 L E F + ++H ++ KE +M +F + +L+AT+VIEVGID +A+ +++E+A Sbjct: 500 LKEVFGEYVVDMLHSKLPSDLKEEIMKNFYSKKVDILVATSVIEVGIDCPNATCMVVEHA 559 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628 E FGL+ LHQ+RGRVGR S LLY PL+ RL +K DGF IAEEDL+ R Sbjct: 560 ERFGLSTLHQIRGRVGRSNLQSFFFLLYKEPLTSAGKFRLKTIKENLDGFKIAEEDLRLR 619 Query: 629 KEGEILGIKQSGMPKFLIAQ 648 G + G++Q+G K IA Sbjct: 620 GPGNLFGLEQAGYLKLKIAN 639 >gi|15594926|ref|NP_212715.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi B31] gi|195941715|ref|ZP_03087097.1| DNA recombinase (recG) [Borrelia burgdorferi 80a] gi|216264673|ref|ZP_03436665.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 156a] gi|218249676|ref|YP_002375089.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi ZS7] gi|221218004|ref|ZP_03589470.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 72a] gi|224532735|ref|ZP_03673352.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi WI91-23] gi|224533522|ref|ZP_03674111.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi CA-11.2a] gi|225549658|ref|ZP_03770624.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 118a] gi|226321887|ref|ZP_03797413.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi Bol26] gi|3914613|sp|O51528|RECG_BORBU RecName: Full=ATP-dependent DNA helicase recG gi|2688498|gb|AAC66942.1| DNA recombinase (recG) [Borrelia burgdorferi B31] gi|215981146|gb|EEC21953.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 156a] gi|218164864|gb|ACK74925.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi ZS7] gi|221191952|gb|EEE18173.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 72a] gi|224512353|gb|EEF82737.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi WI91-23] gi|224513195|gb|EEF83557.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi CA-11.2a] gi|225369935|gb|EEG99382.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 118a] gi|226233076|gb|EEH31829.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi Bol26] gi|312148401|gb|ADQ31060.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi JD1] gi|312149549|gb|ADQ29620.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi N40] Length = 686 Score = 311 bits (796), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 207/620 (33%), Positives = 329/620 (53%), Gaps = 28/620 (4%) Query: 43 DLLFYHPSSFIDRH---YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99 DL+ + P + DR P S++ ++T+ + H F ++ K+ + Sbjct: 34 DLIEFFPVKYEDRQNIQTFPDFSKVKSCDMMTVFTVLG-HKKFGDSSKKNLKLTVKSINE 92 Query: 100 E-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI--FHNSQDVNFPLI 156 E +L F R L+NVF +K + K + ++ ++ + F I Sbjct: 93 EPFEILLFNRA--FLENVFKIDKKFYIYSKFTYNDYSGLWSCSNFDSEVYSDKPERFKKI 150 Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNPRKA 215 VYSL GL+ + EAL + I + L++K S S+++A IH P Sbjct: 151 LPVYSLTEGLTSKKISLYVKEALEYFFKFGQTDIPRFLIEKYSLLSLSDALKEIHFP--- 207 Query: 216 KDFEWTSPARERLAYDELLAGQI------ALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269 E A++ L Y E+ Q + +L R+ KK++ + +K++ ++ Sbjct: 208 SSLEMLEKAKKTLIYREIFLLQFFSRYRSSKILFRE--KKDLS------KDLLEKVVSSL 259 Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T+ Q+ +I +I D++ M R+LQGDVGSGKTLVAL++ +EAG Q MAP Sbjct: 260 PFELTEDQKISIDEIFFDLNSSKPMNRLLQGDVGSGKTLVALLSGLPLIEAGYQVAFMAP 319 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHY+ + I + ++TG++ + + +ALE I +G + +I+GTHA+F +S Sbjct: 320 TDLLARQHYDNLSNILAPFNISMTLLTGSLRKKDKEQALESIRNGTSGLIVGTHAIFYES 379 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 ++ +L VI+DEQH+FGV QR +L K +LLM+ATPIPR+ LT GD+++S I Sbjct: 380 TEFKRLAYVIIDEQHKFGVVQREELKNKGEGVDMLLMSATPIPRSFALTLFGDLEVSFIK 439 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P GR PI T + D+V E L+ L +G + Y++ P I ++ + V Sbjct: 440 TLPKGRLPITTYLARHGNEDKVYEFLRKELLKGHQVYFVYPLISSSEKFELKDVNNMCLK 499 Query: 510 LHEHFTSSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 L E F + ++H ++ KE +M +F + +L+AT+VIEVGID +A+ +++E+A Sbjct: 500 LKEVFGEYVVDMLHSKLPSDLKEEIMKNFYSKKVDILVATSVIEVGIDCPNATCMVVEHA 559 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628 E FGL+ LHQ+RGRVGR S LLY PL+ RL +K DGF IAEEDL+ R Sbjct: 560 ERFGLSTLHQIRGRVGRSNLQSFFFLLYKEPLTSAGKFRLKTIKENLDGFKIAEEDLRLR 619 Query: 629 KEGEILGIKQSGMPKFLIAQ 648 G + G++Q+G K IA Sbjct: 620 GPGNLFGLEQAGYLKLKIAN 639 >gi|295696051|ref|YP_003589289.1| DEAD/DEAH box helicase domain protein [Bacillus tusciae DSM 2912] gi|295411653|gb|ADG06145.1| DEAD/DEAH box helicase domain protein [Bacillus tusciae DSM 2912] Length = 689 Score = 311 bits (796), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 219/695 (31%), Positives = 358/695 (51%), Gaps = 44/695 (6%) Query: 4 SFLNPLFAPLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61 ++ +PL P++ GVG + + L I + G DLL+++P + D R + Sbjct: 7 AWQDPLARPVTFLPGVGPRRARALESLGIRSIG--------DLLYHYPFRYEDLRLR-RP 57 Query: 62 SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 E + R V + G ++ R P + D G ++R+ +L+ + R Sbjct: 58 GEWEDGRRVAVEGTVAGKPRVSRGGRVPVVAVPMDVQGIRIHAVWFRQAYVLERLT-RYR 116 Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179 + + G+ + + +++ H + V+ I VY L + I AL Sbjct: 117 RWRLAGRWQAARRSLVVEHMEPVSEGGAGHSVHAGRIVPVYQTSGDLRPKWLRTWIASAL 176 Query: 180 SRL------PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233 P+ W K L K AEA IH PR D+E ARERL Y+E Sbjct: 177 KEAEPHLVDPLPWRWRAKLGLMDK-----AEALREIHFPR---DWERLGRARERLVYEEC 228 Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 L Q+ L R + K + + + ++ L +PFSPT+ Q ++ + +++ Sbjct: 229 LRFQLPLQCARWRQKSRRAPALRLTRREWEEFLAALPFSPTEGQRRVLRAVAAEIAGHAP 288 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R++ GDVGSGKT++A A+ AA +GGQ V++AP ILA+QH + + V Sbjct: 289 MRRLILGDVGSGKTVIAAAALFAAAMSGGQGVLLAPTEILAEQHARTLSGWFAGFSFPVW 348 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++TG +A R + I+ G+ I++GTHA+ + Y L + + DEQ RFGV QR+ Sbjct: 349 LLTGGTDRAERTRCFADISAGRPGILVGTHAVL-GHVPYSALRVAVCDEQQRFGVVQRMA 407 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP--AGRKPIKTVIIPINRIDEV 471 L + + H+L M+ATPIPRTL + GD+D+S + +P GR+ T +P+ R +EV Sbjct: 408 LLRPNESIHLLSMSATPIPRTLAMALFGDVDVSFLPARPETPGRR--VTRWLPLEREEEV 465 Query: 472 IERLKVVLSEGKKAYWICPQI---EEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSD 527 + L+ LS G++AY + P I E+ ES + V+ F+ E ++ ++HGRMS Sbjct: 466 VLELRQRLSRGERAYVVAPAIGRPGEQPESK-KDVLSLFDWFREQLAGFAVGLLHGRMSP 524 Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587 +KE VM +F G + L+ATTV+EVG+DV +A++++I +AE FGL+QLHQLRGR+GR Sbjct: 525 GEKERVMRAFAEGAIQALVATTVVEVGVDVPEATMMVIYHAERFGLSQLHQLRGRIGRSG 584 Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 + + C +L PL+ + R+ + DG+L+A++DL+ R G+ G+ QSG P F + Sbjct: 585 QDAVCFVLTG-PLTDIARQRIEAFQAVNDGYLLAKKDLELRGPGDWAGLAQSGWPDFALF 643 Query: 648 QPELHDSLLEIARKDAKHILTQD-----PDLTSVR 677 P + + A+ A H++ P+ S+R Sbjct: 644 DPIRDEIWMRRAKHHAHHLVRSREFWLLPEFASLR 678 >gi|225548726|ref|ZP_03769773.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 94a] gi|225370756|gb|EEH00192.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 94a] Length = 686 Score = 311 bits (796), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 207/620 (33%), Positives = 329/620 (53%), Gaps = 28/620 (4%) Query: 43 DLLFYHPSSFIDRH---YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99 DL+ + P + DR P S++ ++T+ + H F ++ K+ + Sbjct: 34 DLIEFFPVKYEDRQNIQTFPDFSKVKSCDMMTVFTVLG-HKKFGDSSKKNLKLTVKSINE 92 Query: 100 E-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI--FHNSQDVNFPLI 156 E +L F R L+NVF +K + K + ++ ++ + F I Sbjct: 93 EPFEILLFNRA--FLENVFKIDKKFYIYSKFTYNDYSGLWSCSNFDSEVYSDKPERFKKI 150 Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNPRKA 215 VYSL GL+ + EAL + I + L++K S S+++A IH P Sbjct: 151 LPVYSLTEGLTSKKISLYVKEALEYFFKFGQTDIPRFLIEKYSLLSLSDALKEIHFP--- 207 Query: 216 KDFEWTSPARERLAYDELLAGQI------ALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269 E A++ L Y E+ Q + +L R+ KK++ + +K++ ++ Sbjct: 208 SSLEMLEKAKKTLIYREIFLLQFFSRYRSSKILFRE--KKDLS------KDLLEKVVSSL 259 Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T+ Q+ +I +I D++ M R+LQGDVGSGKTLVAL++ +EAG Q MAP Sbjct: 260 PFELTEDQKISIDEIFFDLNSSKPMNRLLQGDVGSGKTLVALLSGLPLIEAGYQVAFMAP 319 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHY+ + I + ++TG++ + + +ALE I +G + +I+GTHA+F +S Sbjct: 320 TDLLARQHYDNLSNILAPFNISMTLLTGSLRKKDKEQALESIRNGTSGLIVGTHAIFYES 379 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 ++ +L VI+DEQH+FGV QR +L K +LLM+ATPIPR+ LT GD+++S I Sbjct: 380 TEFKRLAYVIIDEQHKFGVVQREELKNKGEGVDMLLMSATPIPRSFALTLFGDLEVSFIK 439 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P GR PI T + D+V E L+ L +G + Y++ P I ++ + V Sbjct: 440 TLPKGRLPITTYLARHGNEDKVYEFLRKELLKGHQVYFVYPLISSSEKFELKGVNNMCLK 499 Query: 510 LHEHFTSSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 L E F + ++H ++ KE +M +F + +L+AT+VIEVGID +A+ +++E+A Sbjct: 500 LKEVFGEYVVDMLHSKLPSDLKEEIMKNFYSKKVDILVATSVIEVGIDCPNATCMVVEHA 559 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628 E FGL+ LHQ+RGRVGR S LLY PL+ RL +K DGF IAEEDL+ R Sbjct: 560 ERFGLSTLHQIRGRVGRSNLQSFFFLLYKEPLTSAGKFRLKTIKENLDGFKIAEEDLRLR 619 Query: 629 KEGEILGIKQSGMPKFLIAQ 648 G + G++Q+G K IA Sbjct: 620 GPGNLFGLEQAGYLKLKIAN 639 >gi|315083489|gb|EFT55465.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL027PA2] Length = 590 Score = 311 bits (796), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 185/515 (35%), Positives = 282/515 (54%), Gaps = 34/515 (6%) Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LPEW L Q+ PS+ EA++ IH P + + + ERL ++E +A Q+ + + R Sbjct: 60 LPEW----LRQEADLPSLWEAYHAIHYPHSVAEADRGA---ERLIWEEAIATQVTMAVRR 112 Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 + ++ + + +G + +PF+PT Q+ + I D+S M R+LQG+VG Sbjct: 113 RSAERHDAPVCSRRDGGLLAAFEDRLPFTPTVGQDEVSRVIDADLSADRPMHRLLQGEVG 172 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-----------TQIIV 352 SGKT VAL AM V+AG QAV++AP +LAQQHY I + V Sbjct: 173 SGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGGGLDAPEISTGV 232 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 ++TG+M A R AL IA G A II+GTH+L + Y + LV+VDEQHRFGV+QR Sbjct: 233 ALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFGVEQRS 292 Query: 413 KLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI----NR 467 LT A PH L++TATPIPRT+ +T GD+++S + E P GR ++T ++ + + Sbjct: 293 VLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLPAHGSW 352 Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS------I 518 + +R++ G + + +CP+I + R L + + Sbjct: 353 LTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGRRPAAAVEELAPQLATGPLAGLRV 412 Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578 +H R+ +K+ VMD F G ++LI+TTVIEVG+DV +A++++I +A+ FG++QLHQ Sbjct: 413 EALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGVSQLHQ 472 Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638 LRGR+GRG C+L+ P + RL + + DGF +AE DL QR EG +LG Q Sbjct: 473 LRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNVLGSSQ 532 Query: 639 SGMPKFLIAQPELHDSLLEIARKD-AKHILTQDPD 672 +G L L + + A KD A+ + + PD Sbjct: 533 AGYSSPLRLLRVLDHAEIVTASKDLAERWVAEAPD 567 >gi|312871492|ref|ZP_07731586.1| putative ATP-dependent DNA helicase RecG [Lactobacillus iners LEAF 3008A-a] gi|311093012|gb|EFQ51362.1| putative ATP-dependent DNA helicase RecG [Lactobacillus iners LEAF 3008A-a] Length = 453 Score = 310 bits (794), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 168/452 (37%), Positives = 270/452 (59%), Gaps = 5/452 (1%) Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L+ +K GI + ++ +I F + Q AI +IL D++ RM R+LQGD Sbjct: 6 LLYANDQKNSGIAKKYDSSAINELKESINFQLSDDQIQAINEILADLASAKRMNRLLQGD 65 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VA+ A+ A + AG Q +M P ILAQQH I + + ++T + Sbjct: 66 VGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCALLTSSTKL 125 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 +++ + G +++IGTHA+ QD + + KL LVI+DEQHRFGV QR +L K Sbjct: 126 NEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQLLNKGKMV 185 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 +L M+ATPIPRTL L+ G+ +S+I + P GRK + + I + + +++ + L + Sbjct: 186 DILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLTLMNEQLEQ 245 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540 G + Y + P I E + + ++ + + +F S +A++HG+M K +MD+F +G Sbjct: 246 GFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMGSSQKSDIMDAFIHG 305 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 + K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG S CI + P Sbjct: 306 SIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGSTQSYCIFVSDPK- 364 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + ++ RL ++ +DGF +A EDLK R EG+I G QSG+P+F + + ++ A+ Sbjct: 365 TDSAKKRLKIISTCDDGFALAREDLKLRGEGDIFGQAQSGIPQFKLGDIINNYNIFTTAQ 424 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692 K++K ++ Q+P+L G+ L L +Y++ Sbjct: 425 KESKILVHQNPELV---GEEYDFLKLLMEYDD 453 >gi|222623538|gb|EEE57670.1| hypothetical protein OsJ_08114 [Oryza sativa Japonica Group] Length = 946 Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 203/630 (32%), Positives = 327/630 (51%), Gaps = 77/630 (12%) Query: 117 FFEGRKITVTGKIKKLKNRIIMVHPHYIFHN-------SQDVNFPLIE----AVYSLPTG 165 + EG V+GKIKK + HY ++ L++ +Y G Sbjct: 320 YKEGDLAYVSGKIKK-----ALTKDHYDLREYTIDMLEEEEQQCTLLDRKPYPIYPSKAG 374 Query: 166 LSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR 225 L L I AL L + + ++L + + P++ +A+ IH P+ + ++ AR Sbjct: 375 LKPSLLSLSISRALKMLTPDIDPMPHEVLVEFNLPNLFDAYMGIHKPKNRDEADF---AR 431 Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVE-------------------GKIAQKIL 266 RL +D+ Q+ L Q + +G + E +A+K+L Sbjct: 432 RRLIFDDFFYLQLGRLF---QMLEAVGTRVEKEELLLKCKNHELNAVGADEWSPLARKLL 488 Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 + +P+ T SQ +A+K+I+ D+ + M R+LQGDVG GKT+VA +A + +G QA Sbjct: 489 KVLPYLLTPSQLNAVKEIIWDLRRPVPMNRLLQGDVGCGKTVVAFLACMEVISSGFQAAF 548 Query: 327 MAPIGILAQQHYE----FIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 M P +LA QHYE ++K+ + + + ++TG+ R + G+ ++IG Sbjct: 549 MVPTEVLALQHYEHLTSLLEKFDGDECKPNIALLTGSTSTRESRIIRNGLKTGEIAMVIG 608 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----------------------- 418 TH+L D ++ L + ++DEQ RFGV QR + K Sbjct: 609 THSLIGDKTEFSALRISVIDEQQRFGVVQRGRFNSKLYTPSTKSSDDDTISDENSASEIF 668 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLK 476 APHVL M+ATPIPRTL L GD+ +++IT+ P GR+PI+T+ + N + V + + Sbjct: 669 MAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRQPIETLALEGNDAGFESVFQMMS 728 Query: 477 VVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 L +G K Y + P IEE ++ + F+S+ + F ++HGRM +K+ + Sbjct: 729 DELVDGGKVYLVYPIIEESEQLPQLHAAKAEFDSIKQKFEGYPCGLLHGRMRSDEKDGAL 788 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 SF++G ++L++T VIE+G+DV DAS++++ NAE FG++QLHQLRGRVGRGE S C+ Sbjct: 789 SSFRSGETRILLSTQVIEIGVDVPDASMMVVMNAERFGMSQLHQLRGRVGRGERKSRCVF 848 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHD 653 L P ++ RL VL+ + DGF +A DL R G++LG KQSG +P+F IA+ E+ Sbjct: 849 LCSTP---SALPRLKVLEKSSDGFYLANADLLLRGPGDLLGKKQSGHLPEFPIARLEIDG 905 Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRI 683 S+L+ A A ++L DL G + + Sbjct: 906 SILQEAHLAALNVLGTSNDLAQFPGLKVEL 935 >gi|309809537|ref|ZP_07703395.1| putative ATP-dependent DNA helicase RecG [Lactobacillus iners SPIN 2503V10-D] gi|308170209|gb|EFO72244.1| putative ATP-dependent DNA helicase RecG [Lactobacillus iners SPIN 2503V10-D] Length = 453 Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 168/452 (37%), Positives = 270/452 (59%), Gaps = 5/452 (1%) Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 L+ +K GI + ++ +I F + Q AI +IL D++ RM R+LQGD Sbjct: 6 LLYANDQKNNGIAKKYDSSAINELKESINFQLSDDQIQAICEILADLASAKRMNRLLQGD 65 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VA+ A+ A + AG Q +M P ILAQQH I + + ++T + Sbjct: 66 VGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCALLTSSTKL 125 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 +++ + G +++IGTHA+ QD + + KL LVI+DEQHRFGV QR +L K Sbjct: 126 NEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQLLNKGKMV 185 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 +L M+ATPIPRTL L+ G+ +S+I + P GRK + + I + + +++ + L + Sbjct: 186 DILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLTLMNEQLEQ 245 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540 G + Y + P I E + + ++ + + +F S +A++HG+M K +MD+F +G Sbjct: 246 GFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMGSSQKSDIMDAFIHG 305 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 + K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG S CI + P Sbjct: 306 SIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGTTQSYCIFVSDPK- 364 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660 + ++ RL ++ +DGF +A EDLK R EG+I G QSG+P+F + + ++ A+ Sbjct: 365 TDSAKKRLKIISTCDDGFALAREDLKLRGEGDIFGQAQSGIPQFKLGDIINNYNIFTTAQ 424 Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692 K++K ++ Q+P+L G+ L L +Y++ Sbjct: 425 KESKILVHQNPELV---GEEYDFLKLLMEYDD 453 >gi|218133743|ref|ZP_03462547.1| hypothetical protein BACPEC_01612 [Bacteroides pectinophilus ATCC 43243] gi|217991118|gb|EEC57124.1| hypothetical protein BACPEC_01612 [Bacteroides pectinophilus ATCC 43243] Length = 494 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 169/475 (35%), Positives = 273/475 (57%), Gaps = 29/475 (6%) Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 +++ +Y L GLS + K + +AL ++PE + +L + I A IH P+ Sbjct: 18 IMQPIYPLTRGLSNKIVSKAMQQALDIKELVPELLPAELRRSNELAEINFAMRAIHFPKD 77 Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274 D+E AR+RL +DE + + M++ ++ + + + ++ +P+ T Sbjct: 78 MNDYE---AARKRLVFDEFFFFMLNVRRMKENNSRQPNLSRIADDARTDEFIKKLPYELT 134 Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334 +Q+ +++ DM+ + M R++QGDVGSGKT++A++A+ V AG Q +M P +LA Sbjct: 135 NAQKRTWQEVSSDMNGERLMNRLVQGDVGSGKTIIAVLALMNTVYAGYQGAMMVPTEVLA 194 Query: 335 QQHYE----FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +Q Y+ +KY N I V ++ G+M + ++K +RIA G+A I+IGTHAL Q + Sbjct: 195 RQQYDDTCAMFEKYGIN--INVSLLIGSMTASAKKKERQRIASGEAGIVIGTHALIQAGV 252 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 +Y L LV+ DEQHRFGV QR LTQK ++ H L+M+ATPIPRTL + GD+DIS + E Sbjct: 253 EYANLGLVVTDEQHRFGVHQRESLTQKGSSVHTLVMSATPIPRTLAIIIYGDLDISVMNE 312 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN----------- 499 P+ R PIK ++ + ++ + G +AY ICP +E +++ + Sbjct: 313 LPSSRLPIKNAVVGTDYRPNAYRFIENQVQAGHQAYVICPMVEAREDGDVMEDGRGDTFA 372 Query: 500 -------FRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTV 550 +VV+ L ++ SSI + +HG+M K+ +M+ F +G ++L++TTV Sbjct: 373 NTNMHATLENVVDYTTMLKKNLPSSINVEYLHGKMKPAVKDEIMERFHSGQTQVLVSTTV 432 Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 IEVG++V +A++++IENA+ FGLAQLHQLRGRVGRG S CI + K Y Sbjct: 433 IEVGVNVPNATVMLIENADRFGLAQLHQLRGRVGRGAYQSYCIFVGTSNAKKRKY 487 >gi|226941691|ref|YP_002796765.1| RecG [Laribacter hongkongensis HLHK9] gi|226716618|gb|ACO75756.1| RecG [Laribacter hongkongensis HLHK9] Length = 685 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 193/546 (35%), Positives = 308/546 (56%), Gaps = 24/546 (4%) Query: 40 RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99 R DL+ + P + D + V + G I+ Q + R+ L D +G Sbjct: 22 RRFDLVLHLPLRYEDETQLTPVRAARYGEPVMVEGEITAQQ-VQYKPRKQLVATLADESG 80 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV--NFPLIE 157 ++ L F + LK + G+++ G+++ MVHP +DV + PL + Sbjct: 81 QLILRFLHFYPTHLKQLAV-GQRVRAMGEVRHGYFGDEMVHPKI-----RDVTPDTPLAD 134 Query: 158 ---AVYSLPTGLSVDLFKKIIVEAL--SRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHN 211 VY G++ + +++I AL RL LPE + +L A+A I+H Sbjct: 135 HLTPVYPAVQGVTQLMLRRLIAGALRDERLDDTLPEPMRHEL----GLVPFADAVRILHQ 190 Query: 212 PRK----AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267 P A + PA +RL +DELLA Q+++ L + + + G++ + +L+ Sbjct: 191 PPARMPVAVLADGALPAWQRLKFDELLAQQLSMRLAYRARRAFAAPVLKGNGQLTRALLQ 250 Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 +PF T++Q + +I D++Q + M R+LQGDVGSGKT+VA +A A+EAG QA +M Sbjct: 251 ALPFELTRAQARVMGEISHDLAQSHPMHRLLQGDVGSGKTVVAALAALIAIEAGWQAALM 310 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 AP ILA+QH+ + + I V ++G++ + ++ A+E +A G+A + IGTHALFQ Sbjct: 311 APTEILAEQHHRKLAGWLAPLGIKVVWLSGSLKKKDKQAAIEAMASGEAQLAIGTHALFQ 370 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D + + +L LV++DEQHRFGV QRL LTQK PH L M+ATPIPRTL ++ D+D+S Sbjct: 371 DGVSFTRLGLVLIDEQHRFGVGQRLALTQKGGEPHQLTMSATPIPRTLAMSYFADLDVSV 430 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 I E P GR PI+T +I +R +V+ ++ + G++AYW+CP IEE + ++ V F Sbjct: 431 IDELPPGRTPIQTKLISTSRRHDVMAAIRKEIDAGRQAYWVCPLIEESETLELQNAVATF 490 Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 L E + ++HGR+ +K +VM +F+ +LL+ATTVIEVG+DV +A++++IE Sbjct: 491 EELAESLPGIVVGLVHGRLKPDEKAAVMAAFQQNVVQLLVATTVIEVGVDVPNATLMVIE 550 Query: 567 NAEHFG 572 +AE G Sbjct: 551 HAERMG 556 >gi|224108331|ref|XP_002314808.1| predicted protein [Populus trichocarpa] gi|222863848|gb|EEF00979.1| predicted protein [Populus trichocarpa] Length = 888 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 204/634 (32%), Positives = 327/634 (51%), Gaps = 75/634 (11%) Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY--------IFHNSQDVN 152 T L F +K E + G + V+GK++ + + HY + + +D + Sbjct: 248 FTCLPFLKKVEAKHKL---GDVVCVSGKVRTMSTK----GDHYEIREYNIDVLEDREDSS 300 Query: 153 FPLIEA----VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI 208 ++E +Y GL+ D + I A+ L + I K+++Q + EA+ Sbjct: 301 -SIVEGRPYPIYPSKGGLNPDFLRDTISRAVRALLADVDPIPKEIIQDFGLLRLHEAYIG 359 Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALL---------------LMRKQFKKEI-G 252 IH P+ A + + AR+RL +DE Q+ L L+ K K E+ Sbjct: 360 IHQPKNADEADL---ARKRLIFDEFFYLQLGRLFQMLEGLGSRMEKDGLLDKYSKPELNA 416 Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312 + + + +K L+ +P+S T SQ SA I+ D+ + M R+LQGDVG GKT+VA + Sbjct: 417 VYVEEWSNLTKKFLKALPYSLTSSQLSASSQIIWDLKRPVPMNRLLQGDVGCGKTIVAFL 476 Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-----TQIIVEIITGNMPQAHRRKA 367 A + +G QA M P +LA QHYE + + ++ V ++TG+ P R Sbjct: 477 ACMEVIGSGYQAAFMVPTELLAIQHYEQLLNLLETMGEVQSKPSVALLTGSTPSKQSRMI 536 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA--------- 418 + G ++IGTH+L +++++ L + +VDEQ RFGV QR + K Sbjct: 537 RRDLQSGDISMVIGTHSLISENVEFSALRIAVVDEQQRFGVIQRGRFNSKLYHSPLSSRM 596 Query: 419 --------------TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464 APHVL M+ATPIPRTL L GD+ +++IT+ P GR P++T I Sbjct: 597 SASNTDTSSEGDFHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRVPVETYIFE 656 Query: 465 INR--IDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFTS-SIAI 520 N ++V + ++ L G + Y + P IE+ ++ R+ + F + + Sbjct: 657 GNYDGFEDVYKMMRDELEAGGRVYLVYPVIEQSEQLPQLRAAAADLEVISHRFQDYNCGL 716 Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580 +HG+M DK+ + F++G +L++T VIE+G+DV DAS++++ NAE FG+AQLHQLR Sbjct: 717 LHGKMKSDDKDEALKRFRSGVTHILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLR 776 Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 GRVGRG S C+L+ + +S RL VL+ + DGF +A DL R G++LG KQSG Sbjct: 777 GRVGRGARKSKCLLVAS---TTSSLDRLKVLEKSSDGFYLANMDLLLRGPGDLLGKKQSG 833 Query: 641 -MPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 +P+F IA+ E+ ++L+ A A +L + DL Sbjct: 834 HLPEFPIARLEIDGNILQEAHAAALKVLGESHDL 867 >gi|225552492|ref|ZP_03773432.1| ATP-dependent DNA helicase RecG [Borrelia sp. SV1] gi|225371490|gb|EEH00920.1| ATP-dependent DNA helicase RecG [Borrelia sp. SV1] Length = 686 Score = 308 bits (788), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 206/620 (33%), Positives = 327/620 (52%), Gaps = 28/620 (4%) Query: 43 DLLFYHPSSFIDRH---YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99 DL+ + P + DR P S++ ++T+ + H F ++ K+ + Sbjct: 34 DLIEFFPVKYEDRQNIQTFPDFSKVKSCDMMTVFTVLG-HKKFGDSSKKNLKLTVKSINE 92 Query: 100 E-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI--FHNSQDVNFPLI 156 E +L F R L+NVF +K + K + ++ ++ + F I Sbjct: 93 EPFEILLFNRA--FLENVFKIDKKFYIYSKFTYNDYSGLWSCSNFDSEVYSDKPERFKKI 150 Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNPRKA 215 VYSL GL+ + EAL + I + L++K S S+++A IH P Sbjct: 151 LPVYSLTEGLTSKKISLYVKEALEYFFKFGQTDIPRFLIEKYSLLSLSDALKEIHFP--- 207 Query: 216 KDFEWTSPARERLAYDELLAGQI------ALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269 E A++ L Y E+ Q + +L R+ KK++ + +K++ ++ Sbjct: 208 SSLEMLEKAKKTLIYREIFLLQFFSRYRSSKILFRE--KKDLS------KDLLEKVVSSL 259 Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T Q+ +I +I D++ M R+LQGDVGSGKTLVAL++ +EAG Q MAP Sbjct: 260 PFELTGDQKISIDEIFFDLNSSKPMNRLLQGDVGSGKTLVALLSGLPLIEAGYQVAFMAP 319 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHY+ + I + ++TG++ + + + LE I +G + +I+GTHA+F +S Sbjct: 320 TDLLARQHYDNLSNILAPFNISMTLLTGSLRKRDKEQTLESIRNGTSGLIVGTHAIFYES 379 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 ++ +L VI+DEQH+FGV QR +L K +LLM+ATPIPR+ LT GD+++S I Sbjct: 380 TEFKRLAYVIIDEQHKFGVVQREELKNKGEGVDMLLMSATPIPRSFALTLFGDLEVSFIK 439 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P GR PI T + D+V E L+ L +G + Y++ P I ++ + V Sbjct: 440 TLPKGRLPITTYLARHGNEDKVYEFLRKELLKGHQVYFVYPLISSSEKFELKDVNNMCLK 499 Query: 510 LHEHFTSSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 L E F + ++H ++ KE +M +F + +L+AT+VIEVGID +A+ +++E+A Sbjct: 500 LKEVFGEYVVDMLHSKLPSDLKEEIMKNFYSKKVDILVATSVIEVGIDCPNATCMVVEHA 559 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628 E FGL+ LHQ+RGRVGR S LLY PL+ RL +K DGF IAEEDL+ R Sbjct: 560 ERFGLSTLHQIRGRVGRSNLQSFFFLLYKEPLTSAGKFRLKTIKENLDGFKIAEEDLRLR 619 Query: 629 KEGEILGIKQSGMPKFLIAQ 648 G + G++Q+G K IA Sbjct: 620 GPGNLFGLEQAGYLKLKIAN 639 >gi|145350405|ref|XP_001419597.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579829|gb|ABO97890.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 539 Score = 307 bits (786), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 199/500 (39%), Positives = 292/500 (58%), Gaps = 29/500 (5%) Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252 LL + S +EA IH PR + E + ARERLA++EL+ Q+ALL R + + Sbjct: 7 LLAELGLLSHSEAVKNIHRPR---NVEAVAQARERLAFEELVLLQVALLQERSRLQ---A 60 Query: 253 IPIN--VEG------KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 +P++ EG + ++ +PF+ T+SQES++++IL DM+ MLR+LQGDVG Sbjct: 61 LPVSESTEGVCIVGTALTDELRSELPFALTRSQESSLEEILSDMAGPAPMLRLLQGDVGC 120 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII--VEIITGNMPQA 362 GKT+VA +A+ AAV AG Q MAP +LA QH+ + + V ++TG+ A Sbjct: 121 GKTVVAAMALLAAVGAGHQGAFMAPTEVLATQHHRVLTDLLSQMRDPPKVALLTGSTKTA 180 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-AP 421 R + LE + G+ II+GTHAL + + + L + +VDEQHRFGV+QR L K P Sbjct: 181 ERAQILEDLNDGKIGIIVGTHALIHEKVVFSSLGIAVVDEQHRFGVEQRAGLLAKGKLPP 240 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 H+L M+ATPIPRTL +T G++ +S I EKPAGR PI T + ++ + + + +S Sbjct: 241 HMLTMSATPIPRTLAMTKFGEMALSVIDEKPAGRLPIITTVCGVDEHSQAYDSMCEEVSR 300 Query: 482 GKKAYWICPQIEEKKESNFRSV---VERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 G +AY I + E S V E + L + + ++HG++ +K + ++ F Sbjct: 301 GGQAYVILRLVNESGSSRMSEVKGAEEEYARLVSKYPNVRFGLLHGQLGADEKAAALEKF 360 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 +G + L+AT+V+EVG+DV +AS+IIIE+A+ FGLA LHQLRGRVGRG S C LL+ Sbjct: 361 SSGETQALVATSVVEVGVDVPNASVIIIEDADGFGLAALHQLRGRVGRGARQSKCFLLHS 420 Query: 598 PPLSKN-------SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 P +N + RL VL+ + +GF IAE DL+ R GE+ G KQSG L Sbjct: 421 PGAGENAELKGDRARDRLRVLEQSNNGFRIAESDLQLRGAGELFGTKQSGQQVNLFHASM 480 Query: 651 LHD-SLLEIARKDAKHILTQ 669 D LLE ARK A ++++ Sbjct: 481 STDLYLLEAARKAAAEMISR 500 >gi|169834949|ref|YP_001715629.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A3 str. Loch Maree] gi|169409056|gb|ACA57466.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A3 str. Loch Maree] Length = 662 Score = 306 bits (784), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 218/624 (34%), Positives = 343/624 (54%), Gaps = 49/624 (7%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY-KI-LLNDGTGE 100 +L+ + PS ++D + I ++ + + +I I++ + K + Y K+ ++D Sbjct: 27 ELVRFFPSKYLDFRKQQFIHQLIDGQTTSIAVTITK---ININKIKQYIKVNAIDDFGAP 83 Query: 101 ITLLFFYRKTEMLKNVFFEGR-----KITVTGKIK---KLKNRIIMVHPHYIFHNSQDVN 152 + L++F N+F + K V G + K N+I +++P YI ++ N Sbjct: 84 LCLIWF-------NNIFINKKLSINTKYIVCGTVSINYKYNNQIQIINPIYISKETE--N 134 Query: 153 FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212 F I +YS G+S + I AL +L E++E++LL++ + EA IH P Sbjct: 135 FKKIMPIYSKIAGMSYEYLTNSIESAL-KLINDSEYLEENLLEQFKLQNEMEALINIHAP 193 Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN--VEGKIAQKILRNIP 270 E A+ R +D L Q L ++ KK+ I I VE QK+L +P Sbjct: 194 LYK---EQIIGAKRRFIFDTLFQYQFQLENKNRKSKKKSEIKIRTLVE---YQKLLDKLP 247 Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T+ Q AI IL M + ++ +L DVG+GKT++A + + VE G Q V+MAP Sbjct: 248 FKLTQDQIKAIDTILNQMQKNKKVNTLLTADVGAGKTVIAFLIIIILVENGYQGVLMAPT 307 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA+QH+ K +T I G + + +++ L+ I G ++IIGTH++ Q + Sbjct: 308 SVLAKQHFNEFNKLLCDTPFKACFINGTLKASEKKEILQGIKEGVYNVIIGTHSVIQKDV 367 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD-IDISKIT 449 ++ KL + ++DE+HRFGV QR L +K H + M+ATPIPR+L LT GD I+I I Sbjct: 368 KFKKLGVAVIDEEHRFGVSQRAVLLEKTNNIHYVTMSATPIPRSLALTMYGDNIEIVTIK 427 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KKESNFRSVVER 506 P GRKPIKT + IN + + + +G + Y++CP IE+ + N S+ + Sbjct: 428 TMPNGRKPIKTAL--INNKKKAYNFMLKEIKKGHQCYFVCPLIEKSYCESMENIDSIEDI 485 Query: 507 FNSLHEHFTS---SIAIIHGRMSD--IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 + ++ F + ++++ G+M + IDKE ++ FKN +++IATTVIEVGI+V +A+ Sbjct: 486 YKEMNTFFKNKDIKLSMVTGKMKEEQIDKE--INKFKNNETQIIIATTVIEVGINVPNAT 543 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621 I+I NAE FGLAQLHQLRGRVGR S CIL+ SKNS RL V+ T DGF+IA Sbjct: 544 TIVINNAERFGLAQLHQLRGRVGRSSLQSYCILIS----SKNS-ERLQVMTTTNDGFIIA 598 Query: 622 EEDLKQRKEGEILGIKQSGMPKFL 645 +DLK R G ++G +QSG +F+ Sbjct: 599 NKDLKLRGSGNLIGEEQSGKNEFV 622 >gi|126434504|ref|YP_001070195.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. JLS] gi|126234304|gb|ABN97704.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. JLS] Length = 741 Score = 306 bits (783), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 210/688 (30%), Positives = 355/688 (51%), Gaps = 80/688 (11%) Query: 19 VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDR---HYRPKISEISEERIVTITGY 75 +G K + L + N DLL ++P + D + ++ E VT Sbjct: 12 IGGKSAALLEEHFGICTVN-----DLLRHYPRKYSDGMSVRGEGESLDLEEGEHVTFVDV 66 Query: 76 ISQHSSFQLQ---KRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 I++ Q++ +RP K L L +T FF + + + G ++ ++G++ Sbjct: 67 ITKAEPGQMKPIPGKRPRKYLRVTLGRRNPVVTATFF--NADWMIDKLPVGTRLMLSGEV 124 Query: 130 KKLKNRIIMVHPHYIFHNSQDVN-----------------------------FPLIEAVY 160 K +N + + HP ++ S FP+ A Sbjct: 125 KYFRNTLQLSHPAFLVLESSATRKIGTKSLKTIAASSGATGDELLAAFERDFFPIYPASA 184 Query: 161 SLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220 + S D++ + + L L +PE + + +++++ S A IH A++ Sbjct: 185 KVQ---SWDIYA-CVRQVLDVLDPVPEPLPESVVRERGLISEDAALRGIH---LAENERD 237 Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQES 279 ARERL +DE + Q L+ R E G P + E + + +PF T Q Sbjct: 238 RDRARERLTFDEAVGLQWGLVSRRYGELTEAGPPAPLREDGLVAGMRERLPFELTNGQRE 297 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 ++ + +++ M R+LQG+VGSGKT++A++AM V+AG Q ++AP +LA QH Sbjct: 298 VLEVLSGELAGTRPMNRMLQGEVGSGKTVIAVLAMLQMVDAGYQCAMLAPTEVLAAQHDR 357 Query: 340 FIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 I++ + V ++TG+M +R+ + +A GQA I+IGTHAL QD Sbjct: 358 SIRQILGPLAMAGQLGGAESATRVALLTGSMTPQQKRQVRDEVATGQAGIVIGTHALLQD 417 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDI 445 S+++ L +V+VDEQHRFGV+QR +L KA PH+L+MTATPIPRT+ LT GD++ Sbjct: 418 SVEFDNLGMVVVDEQHRFGVEQRDRLRAKARGGITPHLLVMTATPIPRTVALTVYGDLET 477 Query: 446 SKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 S + E P GR+PI + I + + +D R+ + +G++AY + +I+E + Sbjct: 478 STLRELPRGRQPITSNTIFVTQHPKWLDRAWARIVEEVRDGRQAYVVASRIDESDKPQKE 537 Query: 502 -------SVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552 +VV ++ L + + ++HGR+S +K++VM +F+ G +L+ TTVIE Sbjct: 538 EQGPPPVTVVALYDILKSGPLAGLRLGLMHGRLSGDEKDAVMTAFRAGEIDVLVCTTVIE 597 Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612 VG+DV +A+++++ +A+ FG++QLHQLRGR+GRG S C+L P + + RL + Sbjct: 598 VGVDVPNATVMVVMDADRFGISQLHQLRGRIGRGSHPSLCLLATRLPETSKAGARLKAVA 657 Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSG 640 T DGF +A+ DL++R+EG++LG+ QSG Sbjct: 658 GTLDGFALADLDLRERREGDVLGMHQSG 685 >gi|3785974|gb|AAC67321.1| putative ATP-dependent DNA helicase RECG [Arabidopsis thaliana] Length = 845 Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 205/616 (33%), Positives = 315/616 (51%), Gaps = 91/616 (14%) Query: 106 FYRKTEMLKNVFFE--------GRKITVTGKIKKLK----------NRIIMVHPHYIFHN 147 F+R T F G + ++GK+K L+ N ++ H Sbjct: 244 FFRGTRFTWQPFLNSIQEKHKVGDLVCISGKVKSLRAEDHFEMREYNIDVLKDEEESSHR 303 Query: 148 SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFN 207 +Q +P +Y GL+ +I AL LP + I K++ + PS+ +A+ Sbjct: 304 AQGRPYP----IYPSKGGLNPKFLSDVISRALRVLPANMDPIPKEITKVFGLPSLNDAYV 359 Query: 208 IIHNPRKAKDFEWTSPARERLAYDELLAGQIALL--------------LMRKQFKKEIGI 253 IH P K + AR+RL +DE Q+A L ++ ++F+K + Sbjct: 360 GIHEP---KTLDEADLARKRLIFDEFFYLQLARLYQMLQSLGTKIEKDVLLEKFRKPVLN 416 Query: 254 PINVE--GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 + +E + + L+ +P+S T SQ SA+ +I+ D+ + M R+LQGDVG GKT+VA Sbjct: 417 SVYIEEWSTLTKSFLKALPYSLTPSQLSAVSEIIWDLKRPVPMNRLLQGDVGCGKTVVAF 476 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 +A + +G QA MAP +LA QHYE + +N + G++ Sbjct: 477 LACMEVIGSGYQAAFMAPTELLAIQHYEQCRDLLENME-------GDL------------ 517 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-------------- 417 G IIGTH+L + I+Y L + +VDEQ RFGV QR K K Sbjct: 518 QSGAISFIIGTHSLIAEKIEYSALRIAVVDEQQRFGVIQRGKFNSKLYGTSMISKSGSSD 577 Query: 418 ---------ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467 + APHVL M+ATPIPR+L L GDI +++IT P GR P++T I N Sbjct: 578 SDDTSKADLSMAPHVLAMSATPIPRSLALALYGDISLTQITGMPLGRIPVETHIFEGNET 637 Query: 468 -IDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFTS-SIAIIHGR 524 I EV + L G + Y + P I++ ++ R+ + + F + ++HGR Sbjct: 638 GIKEVYSMMLEDLKSGGRVYVVYPVIDQSEQLPQLRAASAELEIVTKKFPKYNCGLLHGR 697 Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584 M DKE ++ F++G ++L++T VIE+G+DV DAS++++ NAE FG+AQLHQLRGRVG Sbjct: 698 MKSDDKEEALNKFRSGETQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVG 757 Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPK 643 RG S C+L+ S NS RL++L + DGF +A DL R G++LG KQSG +P+ Sbjct: 758 RGTRKSKCLLVGS---STNSLKRLNMLGKSSDGFYLANIDLLLRGPGDLLGKKQSGHLPE 814 Query: 644 FLIAQPELHDSLLEIA 659 F +A+ E+ ++L+ A Sbjct: 815 FPVARLEIDGNMLQEA 830 >gi|108798904|ref|YP_639101.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. MCS] gi|119868019|ref|YP_937971.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. KMS] gi|108769323|gb|ABG08045.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. MCS] gi|119694108|gb|ABL91181.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. KMS] Length = 741 Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 210/688 (30%), Positives = 355/688 (51%), Gaps = 80/688 (11%) Query: 19 VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDR---HYRPKISEISEERIVTITGY 75 +G K + L + N DLL ++P + D + ++ E VT Sbjct: 12 IGGKSAALLEEHFGIRTVN-----DLLRHYPRKYSDGMSVRGEGESLDLEEGEHVTFVDV 66 Query: 76 ISQHSSFQLQ---KRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129 I++ Q++ +RP K L L +T FF + + + G ++ ++G++ Sbjct: 67 ITKAEPGQMKPIPGKRPRKYLRVTLGRRNPVVTATFF--NADWMIDKLPVGTRLMLSGEV 124 Query: 130 KKLKNRIIMVHPHYIFHNSQDVN-----------------------------FPLIEAVY 160 K +N + + HP ++ S FP+ A Sbjct: 125 KYFRNTLQLSHPAFLVLESSATRKIGTKSLKTIAASSGATGDDLLAAFERDFFPIYPASA 184 Query: 161 SLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220 + S D++ + + L L +PE + + +++++ S A IH A++ Sbjct: 185 KVQ---SWDIYA-CVRQVLDVLDPVPEPLPESVVRERGLISEDAALRGIH---LAENERD 237 Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQES 279 ARERL +DE + Q L+ R E G P + E + + +PF T Q Sbjct: 238 RDRARERLTFDEAVGLQWGLVSRRYGELTEAGPPAPLREDGLVAGMRERLPFELTNGQRE 297 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 ++ + +++ M R+LQG+VGSGKT++A++AM V+AG Q ++AP +LA QH Sbjct: 298 VLEVLSAELAGTRPMNRMLQGEVGSGKTVIAVLAMLQMVDAGYQCAMLAPTEVLAAQHDR 357 Query: 340 FIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 I++ + V ++TG+M +R+ + +A GQA I+IGTHAL QD Sbjct: 358 SIRQILGPLAMAGQLGGAESATRVALLTGSMTPQQKRQVRDEVATGQAGIVIGTHALLQD 417 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDI 445 S+++ L +V+VDEQHRFGV+QR +L KA PH+L+MTATPIPRT+ LT GD++ Sbjct: 418 SVEFDNLGMVVVDEQHRFGVEQRDRLRAKARGGITPHLLVMTATPIPRTVALTVYGDLET 477 Query: 446 SKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 S + E P GR+PI + I + + +D R+ + +G++AY + +I+E + Sbjct: 478 STLRELPRGRQPITSNTIFVTQHPKWLDRAWARIVEEVRDGRQAYVVASRIDESDKPQKE 537 Query: 502 -------SVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552 +VV ++ L + + ++HGR+S +K++VM +F+ G +L+ TTVIE Sbjct: 538 EQGPPPVTVVALYDILKSGPLAGLRLGLMHGRLSGDEKDAVMTAFRAGEIDVLVCTTVIE 597 Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612 VG+DV +A+++++ +A+ FG++QLHQLRGR+GRG S C+L P + + RL + Sbjct: 598 VGVDVPNATVMVVMDADRFGISQLHQLRGRIGRGSYPSLCLLATRLPETSKAGARLKAVA 657 Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSG 640 T DGF +A+ DL++R+EG++LG+ QSG Sbjct: 658 GTLDGFALADLDLRERREGDVLGMHQSG 685 >gi|288923497|ref|ZP_06417616.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f] gi|288345155|gb|EFC79565.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f] Length = 783 Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 231/795 (29%), Positives = 375/795 (47%), Gaps = 128/795 (16%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L PL + +G K++ L+ ++ DLL + P + +R + + Sbjct: 4 LDTPLKSV--LGAKHASLLADELDLATVG-----DLLNHLPRRYHERGELTDLDGLVVGE 56 Query: 69 IVTITGYISQ------HSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEMLKNVFF 118 I T+ +++ + + RR +I + DG GE++L+FF ++ Sbjct: 57 IATVQARVTKVVKHKPRADWNTSNRRRESGRTEITVTDGRGELSLVFFNQQWR--AKALT 114 Query: 119 EGRKITVTGKIKKLKNRIIMVHP--HYIF------------------------------- 145 G GK+ + + R ++HP H I Sbjct: 115 PGTTALFAGKVAEFRGRRQLIHPEVHMIDGPDPDDDAGDGRLGVAGGQLGELGVGVGGDD 174 Query: 146 -------HNSQDVNF-----PLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKD 192 S +F P+ A L T + ++++++L L LPE + Sbjct: 175 VAGERGDQASAVADFAGALVPIYPATAKL-TSWKIARCLRLVLDSLGALTDPLPESVRS- 232 Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252 + +A A+ +IH P D + AR RL +DE L Q AL R++ + Sbjct: 233 ---RHRLVGLARAYQLIHRPGTRGDV---AVARTRLKWDEALVVQTALAQRRRRVELVAT 286 Query: 253 IP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 P G + ++PF+ T Q + I ++++ M R+LQG+VGSGKT+VA+ Sbjct: 287 QPRPGRAGGLLDAFDASLPFALTDGQREVSETIAAELAKAVPMHRLLQGEVGSGKTVVAV 346 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITGNMP 360 AM AV++GGQAV++AP LA QH+ + + V ++TG+MP Sbjct: 347 RAMLLAVDSGGQAVLLAPTETLAAQHHRSLLRLLGDQARAGELGVSGPATRVALLTGSMP 406 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-T 419 RR L IA G +++GTHAL + ++ L LV+VDEQHRFGV+QR +L + Sbjct: 407 ARARRDTLAAIADGSVGLVVGTHALLGAGVTFHDLALVVVDEQHRFGVEQRDELRSRGRR 466 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP-INRI--DEVIERLK 476 PH+L+MTATPIPRT+ +T GD+++S + + P+GR PI T ++P +N + + RL+ Sbjct: 467 PPHLLVMTATPIPRTVAMTVFGDLEVSVLNQLPSGRSPISTFVVPAVNTVLMSRMWGRLR 526 Query: 477 VVLSEGKKAYWICPQIEEKKES------------------------NFRSVVERFNSL-- 510 ++ G +AY +CP++ E R ER + Sbjct: 527 EEVAAGHQAYVVCPRVGEGTAGAGDPAGTEEPAPPEPVESAQPGGQGPRDGGERVGATVA 586 Query: 511 --------HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 E + +HGRM ++ VM F G +L+ATTVIEVG+DV +A++ Sbjct: 587 QTLPRLVADELAGLRVEGLHGRMPAAARDDVMTRFAAGEVDVLVATTVIEVGVDVPNATV 646 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622 +II +++ FG++QLHQLRGRVGRG C+L + + RL + +T DG +A Sbjct: 647 MIILDSDWFGVSQLHQLRGRVGRGSAPGICLLQTCVDATAPAAERLRAVASTSDGAELAL 706 Query: 623 EDLKQRKEGEILGIKQSGMPK-FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681 DL QR+EG++LG QSG + + + + L+ AR++A I+ DP+L S+ ++ Sbjct: 707 LDLAQRREGDVLGAAQSGGRRSLRLLELLRDEDLIRSAREEAGAIVAADPELQSL--PAL 764 Query: 682 RILL--YLYQYNEAF 694 R LL L + + AF Sbjct: 765 RRLLADALDETSAAF 779 >gi|289705870|ref|ZP_06502250.1| putative ATP-dependent DNA helicase RecG [Micrococcus luteus SK58] gi|289557413|gb|EFD50724.1| putative ATP-dependent DNA helicase RecG [Micrococcus luteus SK58] Length = 730 Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 189/553 (34%), Positives = 291/553 (52%), Gaps = 37/553 (6%) Query: 127 GKIKKLKNRIIMVHPHYIFHNSQ------DVN-FPLIEAVYSLPTGLSVDLFKKIIVEA- 178 G+ + + RI + +P + + DV PL A LP+ +++ Sbjct: 125 GRTTEYRGRITLNNPDFALLDDDVAPGEVDVRPVPLYRATGKLPSWTVRSAVVRVLETVD 184 Query: 179 LSRLP-VLPEWIEKDLLQKKSFP----SIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233 L R+P +L E I + A+A+ +H P D T PA+ LA E Sbjct: 185 LGRIPELLTERIRAEAAAALDLDAPLPGTAQAYRDLHAP---HDVAATGPAQTALALREA 241 Query: 234 LAGQIALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292 L Q AL R ++ G + + + +PF T Q + + + ++++ Sbjct: 242 LLVQAALAWRRDRERAVPAVPRPPRPGGLLEALDARLPFVLTPGQVAVGEQLSAELARDA 301 Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT------- 345 M R+LQGDVG+GKTLVAL AM V+AGGQA ++AP +LA QH + + Sbjct: 302 PMSRLLQGDVGAGKTLVALRAMLQVVDAGGQAALVAPTEVLAAQHNRALLRLMGPLAEAG 361 Query: 346 -----QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400 V ++TG++ A RR+AL +A G+A I +GTHAL + + + +L L +V Sbjct: 362 TLGAGDGPATRVALVTGSLKTAARREALLALASGEAGIAVGTHALLSEKVGFAELALAVV 421 Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460 DEQHRFGV QR L + H+L+M+ATPIPR++ +T GD+D+S + P+GR+P+ T Sbjct: 422 DEQHRFGVDQREALRRANPGTHLLVMSATPIPRSVAMTVFGDLDLSVLEGLPSGRQPVTT 481 Query: 461 VIIPINRIDEVIERLKVVLSE----GKKAYWICPQIE----EKKESNFRSVVERFNSLHE 512 + + VI R+ +++E G +A+ +CP+I+ + +N + R L Sbjct: 482 HVARMAHGPRVIGRVWELIAEHVAAGHQAFVVCPRIDPDDADPGHANVEEMTPRLRGLPA 541 Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 I +HGRM ++++ M +F G +L+ATTVIEVG+DV +A+++ I +A+ FG Sbjct: 542 LAGLRIDAVHGRMDQAEQDAAMQAFARGATDVLVATTVIEVGVDVPNATVMAILDADDFG 601 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 L+ LHQLRGRVGRG + C+L P S RL VL +DG IA+EDL QR G+ Sbjct: 602 LSTLHQLRGRVGRGPGAAVCLLATRLPDGHPSLRRLEVLAQEQDGMRIAQEDLAQRGVGD 661 Query: 633 ILGIKQSGMPKFL 645 +LG QSG+ L Sbjct: 662 VLGAAQSGLASGL 674 >gi|184200687|ref|YP_001854894.1| ATP-dependent DNA helicase RecG [Kocuria rhizophila DC2201] gi|183580917|dbj|BAG29388.1| ATP-dependent DNA helicase RecG [Kocuria rhizophila DC2201] Length = 753 Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 215/694 (30%), Positives = 338/694 (48%), Gaps = 68/694 (9%) Query: 3 PSFLNPLFAPLSTF-RGVGKKYSL-FLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60 P+F L PL+ + G + ++ L+K + + LL + P +I R Sbjct: 13 PAFAGLLDQPLTRWIPGTSPRSTVALLAKDLGITTVGQ-----LLDHAPRRYIHRGRIQA 67 Query: 61 ISEISEERIVTITGYISQHSSFQLQ---KRRPYKILLNDGTGEITLLFFYRKTEMLKNVF 117 ++E+ + + S+ +++ +R +++ D +G + F+ K++ Sbjct: 68 LTELVAGERTSFVARVESSSTRRMRSDPRRSLTDVVVADDSGAQLKITFFNAYSAQKDLP 127 Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD-VNFPLIEA-------VYSLPTGLSVD 169 G TGK + + + M Y ++ D V E+ VY L+ Sbjct: 128 V-GSLALFTGKPEFYRGELSMTGADYAPVDTPDAVAGSTSESGELLPIPVYPEAGKLTTP 186 Query: 170 LFKKIIVEAL--SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARER 227 K + + L L L + + L + + P + A+ +H P + +E A+ R Sbjct: 187 RIGKAVQQLLLTVDLDGLEDPLSPQLREAEDLPPLGRAYRDLHLPETVEAYER---AQRR 243 Query: 228 LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN----IPFSPTKSQESAIKD 283 + E Q L+ R + P + A +L + +PF T Q Sbjct: 244 FRFQEAFVLQTELVRRRAEHASH---PADPRPPCADGVLASFDASLPFELTPGQREVGVQ 300 Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343 I +++ M R+LQGDVGSGKT+VAL AM V+ GGQA ++AP +LA QHYE I Sbjct: 301 ISSELAGTAPMNRLLQGDVGSGKTVVALRAMLQVVDNGGQAAMLAPTEVLATQHYEKITS 360 Query: 344 Y-----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392 V ++TG+M RRKAL IA G + I++GTHAL Q+++Q+ Sbjct: 361 ALGPLAEPGVLGGDPRATGVTLLTGSMSVPARRKALLDIASGASGIVVGTHALIQETVQF 420 Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451 L L +VDEQHRFGV+QR L KA +APH L+MTATPIPRT+ +T GD+D+S + E Sbjct: 421 ADLGLAVVDEQHRFGVEQRDALRGKAGSAPHTLVMTATPIPRTVAMTVFGDLDVSTLREL 480 Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSE-----GKKAYWICPQI-------------- 492 P GR+PI T ++ + ER L+ G++ Y + P+I Sbjct: 481 PGGRRPIATHVVGLAEHGPSWERRVWTLAAEHVAAGRQVYVVAPKIGDDAALPPFTSLCA 540 Query: 493 ------EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 EE + + + E + E ++ A++HGR K M +F G +L+ Sbjct: 541 SLEAQPEEPEPATVTWLTELVAAQPELRSAGTAVLHGRQDAGTKAETMAAFDAGEIDVLV 600 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 +TTV+EVG+DV +A+++++ + E FG++QLHQLRGR+GR E S+C+L+ + Sbjct: 601 STTVVEVGVDVPNATLMVVVDPERFGISQLHQLRGRIGRSEHASTCLLVTRVASEHPARA 660 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 RL + T DGF +AE DLK RKEG+ILG QSG Sbjct: 661 RLDAVAATTDGFELAEADLKLRKEGDILGASQSG 694 >gi|320528411|ref|ZP_08029573.1| putative ATP-dependent DNA helicase RecG [Solobacterium moorei F0204] gi|320131325|gb|EFW23893.1| putative ATP-dependent DNA helicase RecG [Solobacterium moorei F0204] Length = 670 Score = 303 bits (777), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 191/526 (36%), Positives = 298/526 (56%), Gaps = 17/526 (3%) Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 I +YS+ G+ + II L++L + + I + Q + A+ IH P Sbjct: 133 ITPIYSIKEGIRQKTLQTIIHSVLNQLQDEIIDDIPDEFRQAYRLLPLKVAYRCIHIPSS 192 Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI-----AQKILRNI 269 + + A L Y E L A+ LMR GI I + KI Q+ ++ + Sbjct: 193 MNEVQ---IAVRTLKYAEFLRFFTAIQLMRS----TDGIRITKKPKIFSSKKIQQAIQTL 245 Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 F T Q+ ++ IL DM + M R++QGDVG GKT+VA +A+ AA +G Q ++AP Sbjct: 246 SFELTADQKDTLEKILNDMGSTHTMYRLVQGDVGCGKTVVATLALYAAFLSGYQGAMLAP 305 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILA+QHY + + + E++ + A +++ LE +A G+ +I+IGTH++ QDS Sbjct: 306 TEILARQHYISVNQVLAPFGVKTEVLYSALTSAKKKEILEDVASGKINILIGTHSMIQDS 365 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + ++KL L I DEQ RFGV QR L QK LLM+ATPIPRTL + GD+D+S I Sbjct: 366 VTFHKLGLTIADEQQRFGVSQRKALKQKGEQVDFLLMSATPIPRTLAASLFGDMDVSTIE 425 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 PAGR T ++ N V++ +K +L G++ Y IC ++E +E R+V + S Sbjct: 426 TMPAGRITPVTTLVKENSFRTVLDDIKCLLKSGRQLYVICAAVDENEEYYARNVYDTTES 485 Query: 510 LHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 + + F +A +HGRM+ +K+++M +F ++L++TTV+EVG++VV+A+ +II +A Sbjct: 486 IQKLFPQYKVACLHGRMTADEKQAIMQAFNTNDIQILVSTTVVEVGVNVVNATGMIIYDA 545 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628 + FGL+QLHQLRGR+ RG E C LL + RL VL + +GF I+ EDL+ R Sbjct: 546 DRFGLSQLHQLRGRIQRGSEQGYCWLL-TASHEERVLQRLDVLVKSNNGFEISYEDLRLR 604 Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL--TQDPD 672 G+ILG +QSG+P F++ +++ ARKDA ++ +PD Sbjct: 605 GPGDILGTRQSGVPDFILGNIVEDTAMINQARKDALKVMESADNPD 650 >gi|218506884|ref|ZP_03504762.1| ATP-dependent DNA helicase RecG [Rhizobium etli Brasil 5] Length = 243 Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 140/243 (57%), Positives = 185/243 (76%) Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517 I+T+ +P+ R E++ RL+ L+EGKKAYWICP +EE +E + S ER +L Sbjct: 1 IQTITVPMERTGEIVGRLQSALAEGKKAYWICPLVEESEELDLMSAEERHATLVAALGPD 60 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 I +IHGRMS +K++ M +FKNG +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLH Sbjct: 61 IGLIHGRMSGPEKDAAMMAFKNGETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLH 120 Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637 QLRGRVGRG+E S+CILLY PL + + RLS+++ TEDGF IAEEDLK R EGE+LG + Sbjct: 121 QLRGRVGRGDEASTCILLYKGPLGETGHARLSIMRETEDGFRIAEEDLKLRGEGELLGTR 180 Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFI 697 QSG P F IA E H LLEIARKDA +++ +DP+LTS RGQ+IR LLYL++ +EA +F+ Sbjct: 181 QSGTPGFRIASLEAHADLLEIARKDAAYLIERDPELTSERGQAIRTLLYLFRRDEAIRFL 240 Query: 698 RAG 700 RAG Sbjct: 241 RAG 243 >gi|158312984|ref|YP_001505492.1| DEAD/DEAH box helicase domain-containing protein [Frankia sp. EAN1pec] gi|158108389|gb|ABW10586.1| DEAD/DEAH box helicase domain protein [Frankia sp. EAN1pec] Length = 781 Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 184/544 (33%), Positives = 289/544 (53%), Gaps = 47/544 (8%) Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK--QFKKE 250 L + S+ A+ + H P D + AR RL +DE L Q+AL R+ + Sbjct: 239 LRSRHRLASLRRAYELAHRPTSRADI---AVARTRLKWDEALVVQVALAQRRRRAELAAT 295 Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310 + P G + +PF+ T Q + I +M++ M R+LQG+VGSGKT+VA Sbjct: 296 VSRP-GCAGGLLDAFDAALPFALTDGQREVGETIAAEMARAFPMHRLLQGEVGSGKTVVA 354 Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITGNM 359 + AM AV++GGQAV++AP LA QH+ + K V ++TG+M Sbjct: 355 VRAMLTAVDSGGQAVMLAPTETLAAQHHRSLLKLLGDQARAGELGVDGPATRVALLTGSM 414 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA- 418 P RR+ L +A G +++GTHAL + + L LV+VDEQHRFGV+QR +L + Sbjct: 415 PARARREVLAAVADGSVGLVVGTHALLGADVAFADLALVVVDEQHRFGVEQRDELRSRGR 474 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERL 475 PH+L+MTATPIPRT+ +T GD+++S + + PAGR PI T ++P + +D + R+ Sbjct: 475 RPPHLLVMTATPIPRTVAMTVFGDLEVSTLNQLPAGRSPISTFVVPAAKSHFMDRMWGRV 534 Query: 476 KVVLSEGKKAYWICPQIE------------------------EKKESNFRSVVERFNSLH 511 + ++ G +AY +CP++ E+ + V+ R + Sbjct: 535 RDEVAAGHQAYVVCPRVGDGEGGDGGEEPSGPPASGAGPREGERVGATVTEVLPRLAT-G 593 Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 E + +HGR+ ++ +M F G +L+ATTVIEVG+DV +A+++II +A+ F Sbjct: 594 ELAGLRVEGLHGRLPSPVRDEIMTRFAAGEVDVLVATTVIEVGVDVPNATVMIIMDADWF 653 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631 G++QLHQLRGRVGRG C+L + + RL + T DG +A DL QR+EG Sbjct: 654 GVSQLHQLRGRVGRGSAPGVCLLHTSVDGAVPAAERLLAVAATSDGAELARLDLVQRREG 713 Query: 632 EILGIKQSGMPK-FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690 ++LG QSG + + + + L+ AR++A ++ DP+L R+ L + Sbjct: 714 DVLGAAQSGGRRSLRLLELLRDEDLIRAAREEAGALVAADPELEGQPALLRRLTAALDEA 773 Query: 691 NEAF 694 + AF Sbjct: 774 SAAF 777 >gi|314919261|gb|EFS83092.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes HL050PA1] Length = 749 Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 195/606 (32%), Positives = 314/606 (51%), Gaps = 57/606 (9%) Query: 85 QKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139 ++RRP +++L+DG + + FF + + +F GK+ + + +V Sbjct: 95 RERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 154 Query: 140 HPHYIFHN---------------SQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSR 181 HP ++ + + V + +Y + L + + +++E+ Sbjct: 155 HPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYPQTSKLRTWEIASVESMLLESTPE 214 Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 L LPEW L Q+ PS+ EA++ IH P + + + ERL ++E +A Q+ + Sbjct: 215 LEDTLPEW----LRQEADLPSLWEAYHAIHYPHSVAEADRGA---ERLIWEEAIATQVTM 267 Query: 241 LLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 + R+ ++ + + +G + +PF+PT Q+ + I D+S M R+LQ Sbjct: 268 AVRRRSAERHDAPVCSRRDGGLLVAFEDRLPFTPTVGQDEVSRVIDADLSADRPMHRLLQ 327 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-----------T 348 G+VGSGKT VAL AM V+AG QAV++AP +LAQQHY I + Sbjct: 328 GEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGEGLDAPEI 387 Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408 V ++TG+M A R AL IA A II+GTH+L + Y + LV+VDEQHRFGV Sbjct: 388 STGVALLTGSMKAAGTRAALADIASAAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFGV 447 Query: 409 QQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-- 465 +QR LT A PH L++TATPIPRT+ +T GD+++S + E P GR ++T ++ + Sbjct: 448 EQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLPA 507 Query: 466 --NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS--- 517 + + R++ G + + +CP+I + R L + Sbjct: 508 HGSWLTRAWRRIREECDAGHQVFVVCPRINSDDADDVEGGRPPAAAVEELAPQLATGPLA 567 Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + +H R+ +K+ VMD F G ++LI+TTVIEVG+DV +A++++I +A+ FG++ Sbjct: 568 GLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGVS 627 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGR+GRG C+L+ P + RL + + DGF +AE DL QR EG +L Sbjct: 628 QLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNVL 687 Query: 635 GIKQSG 640 G Q+G Sbjct: 688 GSSQAG 693 >gi|306823693|ref|ZP_07457068.1| ATP-dependent DNA helicase [Bifidobacterium dentium ATCC 27679] gi|309802853|ref|ZP_07696954.1| putative ATP-dependent DNA helicase RecG [Bifidobacterium dentium JCVIHMP022] gi|304553400|gb|EFM41312.1| ATP-dependent DNA helicase [Bifidobacterium dentium ATCC 27679] gi|308220320|gb|EFO76631.1| putative ATP-dependent DNA helicase RecG [Bifidobacterium dentium JCVIHMP022] Length = 881 Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 202/587 (34%), Positives = 288/587 (49%), Gaps = 102/587 (17%) Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 +P+ + + L + AEAF IH+P KD + A L Y+E L Q AL+ R Sbjct: 275 VPDIVPEHLRAAEGLMHRAEAFMAIHDPTNTKDCD---AALHTLRYEEALICQTALVKSR 331 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 +K + E + + ++PF T Q I DI DM+ M R+LQG+VGS Sbjct: 332 DASRKAAASACS-ETALLDDFIASLPFDLTAGQRQVIADISADMACDYPMQRLLQGEVGS 390 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY-----------------EFIKKYTQN 347 GKT+VA+ AM AV +G QAV++AP +LA+QHY E+ + + Q+ Sbjct: 391 GKTVVAVAAMMQAVGSGLQAVLVAPTQVLAEQHYESISKMVQRMGGAVRTAEYGESHEQS 450 Query: 348 TQ-------------------------------------------IIVEIITGNMPQAHR 364 T I V ++TG M + R Sbjct: 451 THNQGVDGGAQVGGRSAGGEPAGTGPTGDGLAAGESVIGNLPGGDIPVLLLTGGMKLSAR 510 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHV 423 R+ L A G + I++ THA F + Q L L ++DEQHRFGV+QR L KA APH+ Sbjct: 511 RRVLAVAASGTSCIVVATHAAFSKTFQAPNLALAVIDEQHRFGVEQRESLNAKADKAPHL 570 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP---INRIDEVIERLKVVLS 480 L+MTATPIPRT +T GD+DIS +TE P GRKPI+T ++P + + + ++ L Sbjct: 571 LVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRTFVVPEADAHTMASMFALIRSRLD 630 Query: 481 EGKKAYWICPQIEEKK--------ESNFRS-------------------------VVERF 507 G++AY +CP+I+ E RS + ER Sbjct: 631 AGERAYVVCPRIDADSTEVDTSPDEDPGRSFDELYELGEDDEQRAQRPPLHSVAEIKERL 690 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 L + A + GR D K VM F GT +L+ATTVIEVG+DV AS ++I + Sbjct: 691 AGLPQFAGIRFATLTGRDDDETKMRVMADFAAGTTPILVATTVIEVGVDVAQASCMVIFD 750 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627 A+ +GL+QLHQLRGRVGRG S L+ ++ RL V++ + DG IA+ DL+ Sbjct: 751 ADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEAGSDAAQRLEVIRGSLDGAEIAQADLEF 810 Query: 628 RKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDL 673 R G++LG QSG L + D ++E AR A+ ++ DPDL Sbjct: 811 RGAGDVLGDAQSGGRSSLKLLRVVKDVKIIEHARTAAEELVAADPDL 857 >gi|256827001|ref|YP_003150960.1| RecG-like helicase [Cryptobacterium curtum DSM 15641] gi|256583144|gb|ACU94278.1| RecG-like helicase [Cryptobacterium curtum DSM 15641] Length = 741 Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 213/686 (31%), Positives = 345/686 (50%), Gaps = 54/686 (7%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP----YKILLNDGT 98 DL+ P ++D R I+ + + T+ G+I + +L++ +P +I L D T Sbjct: 55 DLIDRFPHRYLDMSERTTIAAATIGQSCTVAGWIHE---IKLKRPKPRLDLVEITLRDAT 111 Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIE 157 G TLL + L + EG + ++GKI+ M +P+ + S D +I Sbjct: 112 G--TLLVTCFRQPWLADRLHEGDTVALSGKIEFSYGFKRMTNPYLEVVEGSLDAVEGIII 169 Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 ++ L+ ++++ ALS L + + DL + S A IH P + Sbjct: 170 PIHPAGGKLTAAWVRRLVSSALSLCAGLDDPLPLDLRVQYRLMSRQTALQCIHFPHTMDE 229 Query: 218 FEWTSPARERLAYDELLAGQIALLL-MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276 AR RLAY+E+ ++ L++ R + + I ++G + + + +PF+ T+ Sbjct: 230 ARL---ARRRLAYEEVFLLELNLMISQRAEAQGASPIAHRIDGPAVRALAKALPFTLTEE 286 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q A +IL M+ +L GDVG+GKT VAL A+AAA ++G QA++MAP +LA Q Sbjct: 287 QMVARDEILHRMAAPTSASHMLLGDVGTGKTAVALFALAAATDSGNQALMMAPTEVLAAQ 346 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 H + ++T + P R E +++G ++ GTHAL + I Sbjct: 347 HAASAGSLLDAAGVSWALLTASTPTDERACIREGLSNGSLTVLFGTHALLEPDIAPRSCS 406 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 LV++DEQ RFGV+QR L +K L +TATPIPRTL L G + +S +T++P R Sbjct: 407 LVVIDEQQRFGVEQRRTLREKGPGCDYLTLTATPIPRTLALALYGGMTLSYLTKRPRNRA 466 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI------------------EEKKES 498 T ++ +R E E + L G + + +CP I EE+ + Sbjct: 467 GTTTRVLVHSRRGEAYEIARDALDAGHQVFVVCPLIGKPASDAQTKHTREAAADEEEGYA 526 Query: 499 NFRSVVERFNSLHEH----------------FTS-SIAIIHGRMSDIDKESVMDSFKNGT 541 R +E LH+ F S+ ++HGRM +K + M+ F G Sbjct: 527 YARIAIEDEGDLHDDDIHAAREEARFLQEKIFCGYSVGVLHGRMPATEKRASMERFAAGE 586 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L+ATTVIEVGIDV +A+++I+E+A+ FGL+QLHQLRGRVGRG+ L+ + Sbjct: 587 VDVLVATTVIEVGIDVPNATVMIVEDADRFGLSQLHQLRGRVGRGDVPGEVCLISS---T 643 Query: 602 KN--SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 KN + RL+ ++ TE+GF +AE DL R+EG+ILG +Q G + +++E A Sbjct: 644 KNPVALERLAAMERTENGFELAEFDLSLRREGDILGNRQHGASSLRLVNVIRDRAIVETA 703 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILL 685 +DA+ ++ DPDL+ ++R+ L Sbjct: 704 YRDARTLIEADPDLSQPDHAALRLEL 729 >gi|171741407|ref|ZP_02917214.1| hypothetical protein BIFDEN_00490 [Bifidobacterium dentium ATCC 27678] gi|283455245|ref|YP_003359809.1| RecG-like helicase [Bifidobacterium dentium Bd1] gi|171277021|gb|EDT44682.1| hypothetical protein BIFDEN_00490 [Bifidobacterium dentium ATCC 27678] gi|283101879|gb|ADB08985.1| RecG-like helicase [Bifidobacterium dentium Bd1] Length = 881 Score = 300 bits (767), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 202/587 (34%), Positives = 287/587 (48%), Gaps = 102/587 (17%) Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 +P+ + + L + AEAF IH+P KD + A L Y+E L Q AL+ R Sbjct: 275 VPDIVPEHLRAAEGLMHRAEAFMAIHDPTNTKDCD---AALHTLRYEEALICQTALVKSR 331 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 +K + E + + ++PF T Q I DI DM+ M R+LQG+VGS Sbjct: 332 DASRKAAASACS-ETALLDDFIASLPFDLTAGQRQVIADISADMACDYPMQRLLQGEVGS 390 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY-----------------EFIKKYTQN 347 GKT+VA+ AM AV +G QAV++AP +LA+QHY E+ + + Q+ Sbjct: 391 GKTVVAVAAMMQAVGSGLQAVLVAPTQVLAEQHYESISKMVQRMGGAVRTAEYGESHEQS 450 Query: 348 TQ-------------------------------------------IIVEIITGNMPQAHR 364 T I V ++TG M + R Sbjct: 451 THNQGVDGGAQVGGRSAGGELAGTGPTGGGLAAGESGIGNLPGGDIPVLLLTGGMKLSAR 510 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHV 423 R+ L A G I++ THA F + Q L L ++DEQHRFGV+QR L KA APH+ Sbjct: 511 RRVLAVAASGTPCIVVATHAAFSKTFQAPNLALAVIDEQHRFGVEQRESLNAKADKAPHL 570 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP---INRIDEVIERLKVVLS 480 L+MTATPIPRT +T GD+DIS +TE P GRKPI+T ++P + + + ++ L Sbjct: 571 LVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRTFVVPEADAHTMASMFALIRSRLD 630 Query: 481 EGKKAYWICPQIEEKK--------ESNFRS-------------------------VVERF 507 G++AY +CP+I+ E RS + ER Sbjct: 631 AGERAYVVCPRIDADSTEVDTSPDEDPGRSFDELYELGEDDEQRAQRPPLHSVAEIKERL 690 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 L + A + GR D K VM F GT +L+ATTVIEVG+DV AS ++I + Sbjct: 691 AGLPQFAGIRFATLTGRDDDETKMRVMADFAAGTTPILVATTVIEVGVDVAQASCMVIFD 750 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627 A+ +GL+QLHQLRGRVGRG S L+ ++ RL V++ + DG IA+ DL+ Sbjct: 751 ADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEAGSDAAQRLEVIRGSLDGAEIAQADLEF 810 Query: 628 RKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDL 673 R G++LG QSG L + D ++E AR A+ ++ DPDL Sbjct: 811 RGAGDVLGDAQSGGRSSLKLLRVVKDVKIIEHARTAAEELVAADPDL 857 >gi|50954664|ref|YP_061952.1| ATP-dependent DNA helicase RecG [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951146|gb|AAT88847.1| ATP-dependent DNA helicase RecG [Leifsonia xyli subsp. xyli str. CTCB07] Length = 739 Score = 300 bits (767), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 207/652 (31%), Positives = 341/652 (52%), Gaps = 57/652 (8%) Query: 39 TRFI-DLLFYHPSSFIDRHYRPKISEISEERIVTITGYI--SQHSSFQLQKRRPYKILLN 95 TR + DLL ++P + R ++ + + VTI + Q S + ++ ++ ++ Sbjct: 36 TRTVADLLSHYPRRYARRGELTALANLPLDENVTIIAEVLRVQERSMRARRGSILEVKIS 95 Query: 96 DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFH----NSQD 150 DG G +TL FF ++ K++ R I GK+ + + + HP Y +F N+ D Sbjct: 96 DGEGILTLTFF-NQSWRAKDLTPGARGI-FAGKVSAYRGALQLAHPDYELFEPDAGNTVD 153 Query: 151 VNFPLIE-------AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203 + +Y ++ +K + AL L + + + ++ ++ S Sbjct: 154 SGSATAKEWAQTPIPIYPATGAVASWQVQKAVGLALDALGRIEDPVPAGIVAERGLISFR 213 Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDE-LLAGQIALLLMRKQFKKEIGIPINVEGKIA 262 +A +H P+K D +W AR+ L + E + L V G + Sbjct: 214 DALEGVHRPQK--DSQWQR-ARDALRFQEAFVLQAALLQQRAAARAVAATPRRAVPGGLL 270 Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 ++ +PF+ T Q +I +D+ M R++QG+VGSGKTLVAL AM A ++GG Sbjct: 271 ERFDAGLPFALTDDQALVGGEIARDLDADAAMHRLVQGEVGSGKTLVALRAMLAVADSGG 330 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQ---NTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379 Q+ ++AP +LA QH I + +++ ++TG + A R++AL R GQ+ ++ Sbjct: 331 QSALLAPTEVLAAQHLRSIAAMLGPGLSIELMPTLLTGQLSAAERKRALLRTVSGQSRLV 390 Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLT 438 +GTHAL D++ +Y L LV+VDEQHRFGV+QR +L K T PHVL++TATPIPRT+ +T Sbjct: 391 VGTHALLGDAVTFYDLGLVVVDEQHRFGVEQREELRAKGGTPPHVLVLTATPIPRTVAMT 450 Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDE------VIERLKVVLSEGKKAYWICPQI 492 GD+D+S I PAGR+ I++ ++P+ +D + ER +++G++ + +CP I Sbjct: 451 VFGDLDVSTIAHLPAGRQVIESFVVPL--VDRPGWERRIWERASEEIAKGRQVFVVCPAI 508 Query: 493 EEKKE------------------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528 K+ +N SV + + ++ I ++HG + Sbjct: 509 TGKETEEDTGQPEQETEAAFSPDAPARPIANVESVAAQVRADLLFASARIGVLHGGLPSE 568 Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588 K+ M SF G LLIATTVIEVG+DV +AS++I+ +A+ FG++QLHQLRGRVGRG Sbjct: 569 AKDETMRSFAVGDIDLLIATTVIEVGVDVPNASVMIVLDADRFGVSQLHQLRGRVGRGGV 628 Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 C+L+ + R+ + T DGF +A DL+ R+EG++LG +QSG Sbjct: 629 PGLCLLVTAAGQDTLARERVEAVAATLDGFELANIDLELRREGDVLGSRQSG 680 >gi|257063714|ref|YP_003143386.1| RecG-like helicase [Slackia heliotrinireducens DSM 20476] gi|256791367|gb|ACV22037.1| RecG-like helicase [Slackia heliotrinireducens DSM 20476] Length = 723 Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 220/712 (30%), Positives = 356/712 (50%), Gaps = 57/712 (8%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L AP+++ GV + LS++ R DLL + P ++D +IS I Sbjct: 11 LDAPVTSVSGVSSGRAAGLSRL----GIRTVR--DLLQHFPHRYVDMS---RISTIEGAG 61 Query: 69 I---VTITGYISQHSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121 I VTI G I + +L++ RP ++ + DGTG + FF + + G Sbjct: 62 IGDSVTIVGTIHE---VRLKRPRPRLSLTEVTIVDGTGTLIATFF--RQPWIAKTLKTGT 116 Query: 122 KITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180 +++V G ++ M P + + Q+ I V+ ++ + + I+ A+ Sbjct: 117 RVSVAGTLEFNYGYKRMTAPFLDVLEDDQNPMSGQIVPVHHATGKVTPGIMRLIVRNAVD 176 Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240 + + +L K S + A+ IH P+ +D AR RLAY+E+L Q+ + Sbjct: 177 SAWGAYDPLPLELRTKYRLMSRSNAYRSIHFPQDMRDVHQ---ARRRLAYEEVLMLQMHM 233 Query: 241 LLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + + + +V +G ++ +++ +PFS T QE A+ +I M+Q M +L Sbjct: 234 LMSARDRQDDGPAHEHVFDGPYSEALMKALPFSLTSDQERAVAEIQMRMAQPKVMSHMLL 293 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG+GKT VA A+AAA +A Q +MAP +LA Q+ + I ++TG+ Sbjct: 294 GDVGTGKTAVAGFAIAAAADARFQTFMMAPTEVLATQYAASLGGLFDQAGISWALLTGST 353 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 P R L R+A G ++ GTHAL +D + + LVI+DEQ RFGV QR +L +K Sbjct: 354 PAEDREDILMRLASGHTDVVFGTHALLEDDVVAHDCGLVIIDEQQRFGVDQRKRLIEKGR 413 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 L MTATPIPRTL L G++ +S + + P R P KT ++ + + Sbjct: 414 NADALFMTATPIPRTLALALYGNLSLSYLRQVPFDRPPRKTQVVDFRDRGKAYDAALAAC 473 Query: 480 SEGKKAYWICPQI-----------------EEKKES------NFRSVVERFNSLHEHFTS 516 G++ Y +CP + EE+ S + R ++ F Sbjct: 474 RRGEQVYVVCPLVGQKRKADDDKKKDDRDAEEETPSYIESDEDMRQDDQKAAEAEAAFLQ 533 Query: 517 S-------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 S + ++HGRM K + M+ F+ G +L+ TTVIEVG+DV +A+++IIE+A+ Sbjct: 534 SKVFADFKVGLLHGRMDAKAKHAAMEDFRAGQTDVLVCTTVIEVGVDVPNATVMIIEDAD 593 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629 FGL+QLHQLRGRVGRG + L+ S+++ RLS ++ T+DGF +AE DL R+ Sbjct: 594 RFGLSQLHQLRGRVGRGTKPGEVYLIAATS-SEDALERLSAMEATDDGFELAERDLALRR 652 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681 EG+ILG +Q G + L+E+A +DA+ +L DP+ + Q++ Sbjct: 653 EGDILGNRQHGASVLRLVNIVRDGKLIELAHEDAEALLDADPEFETPAMQAL 704 >gi|209524184|ref|ZP_03272734.1| DEAD/DEAH box helicase domain protein [Arthrospira maxima CS-328] gi|209495275|gb|EDZ95580.1| DEAD/DEAH box helicase domain protein [Arthrospira maxima CS-328] Length = 670 Score = 296 bits (758), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 183/518 (35%), Positives = 290/518 (55%), Gaps = 24/518 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99 DLL+Y+P ID + I E++ VTI + + + F K R IL + D TG Sbjct: 153 DLLYYYPRDHIDYARQVPIKELAPGETVTIVAQVKRCNCFSSPKNRQLTILELMVKDATG 212 Query: 100 EITLLFFYRKTEM--------LKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-----IFH 146 ++ + F+ K + G I +G +KK K I + +P + Sbjct: 213 QLKISRFFAGNRYSNKGWQHKQKYNYPPGAIIAASGLVKKNKYGITLDNPELEVLDRVDS 272 Query: 147 NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206 + + + VY L G+ DL +K ++ AL LPE + L +K I++A Sbjct: 273 RAASMKIGRVLPVYPLSDGIGADLLRKAVLAALPAANKLPESLPPKLREKYQLIEISDAI 332 Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK--EIGIPINVEGKIAQK 264 IH P + +W + AR RL +DE QI LL R+Q K E + +G++ Q+ Sbjct: 333 TNIHFP---PNRDWLASARRRLVFDEFFYLQIGLL-QRRQVSKTNEKSAALLPQGELIQQ 388 Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324 + +PF TK+Q+ I +IL D++ + M R++QGDVG+GKT+VA++AM AA++AG Q Sbjct: 389 FYKILPFELTKAQKRVIGEILTDLNSEEPMNRLIQGDVGAGKTVVAVVAMLAAIQAGYQT 448 Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384 +MAP +LA+QHY+ + + + VE++TG+ A RR+ ++ G+ +++GTHA Sbjct: 449 ALMAPTEVLAEQHYQKLVGWLNLMHLPVELLTGSTKAAKRRQIHAQLQTGELPVLVGTHA 508 Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444 L QD + ++KL LV++DEQHRFGV QR KL QK +PHVL MTATPIPRTL LT GD+D Sbjct: 509 LIQDQVNFHKLGLVVIDEQHRFGVHQRAKLQQKGESPHVLTMTATPIPRTLSLTLHGDLD 568 Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504 +S++ E P GR+PI+T ++ + E + + +++G++ Y + P +EE ++ + RS V Sbjct: 569 VSQLDELPPGRQPIQTTMLSGRKRQEAYDLISREVAQGRQVYVVLPLVEESEKLDVRSAV 628 Query: 505 ERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNG 540 E L IA++HGRM+ +KE+ + F+ G Sbjct: 629 EEHQKLPTKIFPELGIALLHGRMNSPEKEAAIAKFREG 666 >gi|213422785|ref|ZP_03355828.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 342 Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 150/314 (47%), Positives = 208/314 (66%), Gaps = 6/314 (1%) Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420 R+ E IA GQ +I+GTHA+FQ+ +Q+ L LVI+DEQHRFGV QRL L +K Sbjct: 9 RQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQGF 68 Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478 PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R E+I+R++ Sbjct: 69 HPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRNAC 128 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 +EG++AYW+C IEE ++ + L +I ++HGRM +K++VM +F Sbjct: 129 TTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQAF 188 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 K G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S C+LLY Sbjct: 189 KQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 248 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A +++ Sbjct: 249 SPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIP 308 Query: 658 IARKDAKHILTQDP 671 ++ A+HI + P Sbjct: 309 EVQRIARHIHERYP 322 >gi|300933877|ref|ZP_07149133.1| ATP-dependent DNA helicase [Corynebacterium resistens DSM 45100] Length = 734 Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 176/478 (36%), Positives = 271/478 (56%), Gaps = 37/478 (7%) Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 PEW + A A IH P E PAR RL ++E L Q+ + L R Sbjct: 217 PEWPVDE--HGAPLLDFATALRQIHQP----PVEGPEPARTRLKFNEALELQLVMALRRA 270 Query: 246 QFKKEIGIPINVEGKIA--QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 + + + V G + Q ++ ++PF + Q+ A +I + +LQG+VG Sbjct: 271 DATQRTAMKMPVGGTDSARQAVVDSLPFELSPGQQRAGAEIAAALDSTTPASLLLQGEVG 330 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE----FIKKYTQNTQIIVEIITGNM 359 SGKT+VAL+AM A+EAG Q +AP +LA QH + + + V ++TG+ Sbjct: 331 SGKTVVALLAMMQAIEAGYQCAFIAPTEVLAVQHARTLVGLLDRSDAGRSVGVTVLTGSQ 390 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A R+ AL I GQA I++GTHA+ Q++++++ L LVIVDEQHRFGV+QR +L + Sbjct: 391 KTAERKAALLDIVSGQAQIVVGTHAVIQETVEFFSLGLVIVDEQHRFGVRQRDQLRNNSP 450 Query: 420 ---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPA-----GRKPIKTVIIPINR---I 468 PH+++MTATPIPRT+ +T GD+ ++ PA R+ + T ++ +++ + Sbjct: 451 VDRTPHMMVMTATPIPRTVAMTMFGDLTPVRLPGLPAREGGEARRGVATNVVYLHKSAWV 510 Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH--EHFTSSIAIIHGRMS 526 V ER + L+ G++A+ + P+IE + V++ F L E + ++HG++ Sbjct: 511 RRVWERCREELNAGRQAFIVAPKIEGEG-----GVLQTFEQLSHTELREYRVGLLHGKLP 565 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 +K+ VM +F G L+ATT++EVG+DV +A+++II A+ FG++QLHQLRGRVGRG Sbjct: 566 PEEKDEVMRAFVAGDIDALVATTIVEVGVDVPNATMMIILGADAFGVSQLHQLRGRVGRG 625 Query: 587 EEISSCILLYHPPLSKN----SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 E C+LL P +N + RL + T DGF +AE DLKQR EG++LG QSG Sbjct: 626 EHAGLCLLL---PSDENLPAVTRERLESVAMTSDGFELAELDLKQRTEGDVLGADQSG 680 >gi|139436979|ref|ZP_01771139.1| Hypothetical protein COLAER_00112 [Collinsella aerofaciens ATCC 25986] gi|133776626|gb|EBA40446.1| Hypothetical protein COLAER_00112 [Collinsella aerofaciens ATCC 25986] Length = 725 Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 221/687 (32%), Positives = 353/687 (51%), Gaps = 38/687 (5%) Query: 43 DLLFYHPSSFID--RHYRPKISEISEERIVTITGYISQHSSFQLQKR-RPYKILLNDGTG 99 DLL + P ++D R + +++ I + TI + + Q + R + ++ L D TG Sbjct: 48 DLLLHIPHRYLDFTRSWSIEMAPIGT--VCTIIATVDRIVQKQPRPRMQVTEVSLVDETG 105 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159 + + FF + + +G ++ V GK++ M PH+ ++ V Sbjct: 106 VLQVAFF--RQPWIAQQLKQGDRLAVMGKVEFAYGFKQMASPHFEKLEGGRAAGTIL-PV 162 Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219 + + G+S ++I+ AL + + I L K+ S A A IH P + + Sbjct: 163 HYVSDGVSRAWMRRIVSGALELVGNPFDPIPAPLRAKRKLMSTARALRSIHFPSSMAERD 222 Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 AR RLAY+E L Q+AL L E+ ++ G+ + + +PFS + QE+ Sbjct: 223 I---ARRRLAYEECLYLQLALRLRNDGGLVEVVPYAHIAGEHLAALKQALPFSLSDEQEA 279 Query: 280 AIKDILQDMSQKNRML-RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 A +DIL DM R++ R+L GDVG+GKT VA A+A AV++G QA +MAP G+LA+Q+ Sbjct: 280 AFQDILHDMCDDARVMNRLLLGDVGTGKTAVAACALAVAVDSGTQACVMAPTGVLARQYA 339 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + I ++TG P A R + ++ G+ ++ GTHA+ + + + L LV Sbjct: 340 DKTGPLLSQAGISWALLTGATPAAERERIHVQLESGELDVLFGTHAVLSEDVNFKHLSLV 399 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 ++DEQHRFGV QR L K +L+MTATPIPRTL L+ GD++ S I +P + Sbjct: 400 VIDEQHRFGVGQRNALRAKGPGADLLVMTATPIPRTLALSVYGDLETSIIRHRPVPGAGV 459 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--------FRSVVERFN-- 508 T ++ + D ++ +G++AY ICP +E ++ R R Sbjct: 460 TTRVLTESSRDLAYGAIREAHEKGQQAYVICPLVEPSDSADELEDVPGIARDDEGRVTVP 519 Query: 509 -SLHEHFTS-----------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556 LH+ T +I +HGRM +K+ V+D+FK G +L++TTV+EVG+D Sbjct: 520 VPLHDTATELDRLRLALPGLTIERLHGRMRAGEKDRVIDAFKRGEIDVLVSTTVVEVGVD 579 Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT---RLSVLKN 613 V +A++++IEN E FGLA LHQLRGRVGRG +C+++ H + + RL L+ Sbjct: 580 VPNATVMVIENGERFGLAALHQLRGRVGRGGVAGTCLVMTHSKGNGGTSAAQDRLQSLEK 639 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 T DGF +A+ DL+ R EGEILG +Q G + + L+E A DA +L +L Sbjct: 640 TADGFTLAQMDLRLRHEGEILGYRQHGGVTLRFVDLDADEELIEWAHLDAVELLRYASNL 699 Query: 674 TSVRGQSIRILLYLYQYNEAFQFIRAG 700 SV + +R + +Y F+ + G Sbjct: 700 DSVATRPLRDAVA-TRYRHIFKEVSGG 725 >gi|189485610|ref|YP_001956551.1| ATP-dependent DNA helicase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287569|dbj|BAG14090.1| ATP-dependent DNA helicase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 700 Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 226/683 (33%), Positives = 341/683 (49%), Gaps = 39/683 (5%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEI 101 D+L + P + DR I + ++ I G I + QL + I + DG Sbjct: 32 DMLTFFPVWYQDRKNIVSIRDAYKQPQSCIFGKIGKAYDRQLSRGLCLLYIEIFDGVSTG 91 Query: 102 TLLFF-----YRKTEM---LKNVFFEGRKITVTGKIKKLK-NRIIMVHPHYIFHNSQD-- 150 FF Y T++ +K F G + G K R I V + N +D Sbjct: 92 YARFFRKKNPYSSTDIFASIKKAFEPGTFAYIYGSTKTGNCGRFIDVDDYETVKNEKDKP 151 Query: 151 VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL-PEWIEKDLLQK-KSFPSIAEAFNI 208 + F I VY L GL+ ++ + L + L P+ + DL+ P + + I Sbjct: 152 LLFNRIMPVYPLTEGLNQRFIREAVKSILDSVCGLYPDVL--DLIPDFGGIPRLKSSLAI 209 Query: 209 --IHNPRKAKDFEWTSPARERLAYDELLAGQIALLL----MRKQFKKEIGIPINVEGKIA 262 IH P +D E AR A E + AL L +RK+ K++ ++ + Sbjct: 210 QKIHYPGTLEDVE---NARRAFALQEFFIFESALSLSHNNIRKKRKEQ---RYEIQKTLF 263 Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 RN+ TK Q+ AI DI DM M R+L GDVG GKT+VAL A+ AV +G Sbjct: 264 TAFKRNLKLEFTKDQKKAINDIFSDMQSLYPMNRMLMGDVGCGKTVVALSAVLLAVGSGY 323 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM--PQAHRRKALERIAHGQAHIII 380 Q +I+AP ILA+QHY + + + T ++ R K L +G I I Sbjct: 324 QTMIVAPTEILAEQHYLTVSNMLLGLSVKAVLATSLTLKKKSEREKILAGFENGDIKIAI 383 Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440 GTH+L +D I++ L L++VDEQ +FGV Q+ ++ KA +P +L+MTATPIPR+L LT Sbjct: 384 GTHSLIEDKIKFKNLSLIVVDEQQKFGVMQKFAMSDKARSPDILMMTATPIPRSLALTVY 443 Query: 441 GDIDISKITEKPAGRKPIKTVIIP-INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499 G +D++ I + P GR +KT + + + IE LK + Y + P I+E + Sbjct: 444 GGMDMTAIKQLPPGRTSVKTYFLAEQSAYIKAIEELK----NKNQVYIVYPIIDESDKLV 499 Query: 500 FRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557 +S + L + + + ++HGRM K +M FKN +LI+TTVI VGIDV Sbjct: 500 LKSAEQESKKLSQTWFRDFKVGLLHGRMKSSKKNKIMLEFKNKEFDVLISTTVIGVGIDV 559 Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617 D +++II++AE FGL+ LHQLRGR+GRG + S L+ ++ + RLSV+ +T +G Sbjct: 560 PDVTVMIIQHAERFGLSDLHQLRGRIGRGSKQSYAYLIGDLK-NEAARKRLSVMTSTNNG 618 Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677 F IAEEDLK R GE++G Q G PKF ++E + A I QDP L+ Sbjct: 619 FKIAEEDLKMRGHGELMGTLQHGFPKFKAGDLIKDADIIEFTKNLAAKITEQDPYLSKGE 678 Query: 678 GQSIRILLYLYQYNEAFQFIRAG 700 ++ L+Y + +++ +FI G Sbjct: 679 NAVLKSLIYKH-FSDKIKFINIG 700 >gi|218191448|gb|EEC73875.1| hypothetical protein OsI_08657 [Oryza sativa Indica Group] Length = 541 Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 168/456 (36%), Positives = 264/456 (57%), Gaps = 36/456 (7%) Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320 +A+K+L+ +P+ T SQ +A+K+I+ D+ + M R+LQGDVG GKT+VA +A + + Sbjct: 78 LARKLLKVLPYLLTPSQLNAVKEIIWDLRRPVPMNRLLQGDVGCGKTVVAFLACMEVISS 137 Query: 321 GGQAVIMAPIGILAQQHYE----FIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQ 375 G QA M P +LA QHYE ++K+ + + + ++TG+ R + G+ Sbjct: 138 GFQAAFMVPTEVLALQHYEHLTSLLEKFDGDECKPNIALLTGSTSTRESRIIRNGLKTGE 197 Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----------------- 418 ++IGTH+L D ++ L + ++DEQ RFGV QR + K Sbjct: 198 IAMVIGTHSLIGDKTEFSALRISVIDEQQRFGVVQRGRFNSKLYTPSTKSSDDDTISDEN 257 Query: 419 ------TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDE 470 APHVL M+ATPIPRTL L GD+ +++IT+ P GR+PI+T+ + N + Sbjct: 258 SASEIFMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRQPIETLALEGNDAGFES 317 Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDI 528 V + + L +G K Y + P IEE ++ + F+S+ + F ++HGRM Sbjct: 318 VFQMMSDELVDGGKVYLVYPIIEESEQLPQLHAAKAEFDSIKQKFEGYPCGLLHGRMRSD 377 Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588 +K+ + SF++G ++L++T VIE+G+DV DAS++++ NAE FG++QLHQLRGRVGRGE Sbjct: 378 EKDGALSSFRSGETRILLSTQVIEIGVDVPDASMMVVMNAERFGISQLHQLRGRVGRGER 437 Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIA 647 S C+ L P ++ RL VL+ + DGF +A DL R G++LG KQSG +P+F IA Sbjct: 438 KSRCVFLCSTP---SALPRLKVLEKSSDGFYLANADLLLRGPGDLLGKKQSGHLPEFPIA 494 Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683 + E+ S+L+ A A ++L DL G + + Sbjct: 495 RLEIDGSILQEAHLAALNVLGTSNDLAQFPGLKVEL 530 >gi|295396026|ref|ZP_06806210.1| DNA helicase RecG [Brevibacterium mcbrellneri ATCC 49030] gi|294971114|gb|EFG47005.1| DNA helicase RecG [Brevibacterium mcbrellneri ATCC 49030] Length = 737 Score = 293 bits (749), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 198/597 (33%), Positives = 305/597 (51%), Gaps = 72/597 (12%) Query: 145 FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIEKDLLQKKS 198 H + P+ +YS+ + ++I L RLP+ +P+ + ++ Sbjct: 151 MHQEMQMTKPM--PIYSVKGKAKLSTVTRVIHRMLDRLPLEAFEDTMPQHVRSEM----G 204 Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI--- 255 S EA IH PR + ARE A++E A Q + +L KQ ++ P+ Sbjct: 205 LYSYKEALEGIHRPRDKAQLQ---QAREWFAFEEAFALQ-SYMLSNKQVHEKEAAPVLAG 260 Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315 GK+ Q ++ F T+SQ+ A +I +D+ + M R+L GDVGSGKTLVAL AM Sbjct: 261 AAMGKLDQ-FDQHQTFELTRSQKQAGTEISRDLVRSTPMNRLLHGDVGSGKTLVALRAML 319 Query: 316 AAVEAGGQAVIMAPIGILAQQHYEFIKK---------YTQNTQIIVEIITGNMPQAHRRK 366 AV++G QA ++AP ILA QH ++ +T +I E++TG+M R++ Sbjct: 320 QAVDSGYQAALLAPTEILATQHVGSLRSLLGELASDGFTDGVRI--ELLTGSMSGRERKR 377 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVL 424 +A G I++GTH L D+ + KL LV++DEQHRFGV+QR +L +K PH L Sbjct: 378 VATELAAGIVDIVVGTHTLLSDTTIFDKLGLVVIDEQHRFGVEQREQLREKGGGKVPHTL 437 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE--- 481 +MTATPIPRT+ LT D+D+S + E P G K + T ++P+ R+ V+SE Sbjct: 438 VMTATPIPRTVALTVYSDLDVSTLRELPGGPKQVSTHVVPMYEKPRWFNRVWEVVSEQVQ 497 Query: 482 -GKKAYWICPQIEEKKESN------------------------------FRSVVERFNSL 510 G + + + +I+ +++ + + ++ SL Sbjct: 498 SGHQTFVVTSRIDSEEDPDATDEGRSSGAHGGVAGETGGSDPGRPRLLGVEELADKLRSL 557 Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 E I +HG+ KE+ M FK+ +L+ATTVIEVG+DV +A ++++ +A+ Sbjct: 558 PELKDVRIETLHGKSEQDVKETAMQRFKDHEFDVLVATTVIEVGVDVHNARVMVVFDADR 617 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630 FG+AQLHQLRGRVGR + + C + S RL + +T DGF +AE DLK RKE Sbjct: 618 FGVAQLHQLRGRVGRDGKPAMCFFVTQNREDSESRERLEYVASTTDGFALAEYDLKTRKE 677 Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687 G++LG Q G + + ++L+ AR A+ L DP L Q + LYL Sbjct: 678 GDVLGTSQWGAARLRFVSIK-DENLIMTARNAAQGALQDDPQL----AQRSALALYL 729 >gi|283769481|ref|ZP_06342377.1| putative ATP-dependent DNA helicase RecG [Bulleidia extructa W1219] gi|283103749|gb|EFC05135.1| putative ATP-dependent DNA helicase RecG [Bulleidia extructa W1219] Length = 667 Score = 293 bits (749), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 177/504 (35%), Positives = 293/504 (58%), Gaps = 17/504 (3%) Query: 170 LFKKIIVEALS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERL 228 +KI+ E L + VLP + L++K +A IH P + A RL Sbjct: 150 FMEKILKECLGEQEDVLPRF----LIEKYHLLHRQQALRYIHLPLHQASLK---QAVRRL 202 Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288 Y+E L L L ++ E + Q +++ IPF T Q++ +I+QDM Sbjct: 203 KYEEFLRFFTHLYLKQEDEHYEGKKKKKILDTYLQALIQQIPFELTTDQKNTFFEIVQDM 262 Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK-YTQN 347 +M R++QGDVGSGKT++A +++ A V +G Q ++AP ILA+QH++ +K + + Sbjct: 263 RSMKKMNRLVQGDVGSGKTVIAGMSLLACVSSGYQCALLAPTEILARQHFQTMKSLFPKE 322 Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407 +Q + + +G + + + L + G+ ++IGTH+L Q +++ KL LV+VDEQ RFG Sbjct: 323 SQRMALLYSG-LSGSEKESILTDLKKGKIQMVIGTHSLLQSGVKFQKLGLVVVDEQQRFG 381 Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467 VQQR L ++ L+MTATPIPRTL + LG +D+S I P GRK T + N Sbjct: 382 VQQREFLKSQSNDVDFLVMTATPIPRTLASSLLGGMDVSTIHSMPQGRKAPVTKRLEENS 441 Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKES-NFRSVVERFNSLHEHFTS-SIAIIHGRM 525 V++ ++ +L +G + Y IC + + R+V + +L + F + ++A+IHG+M Sbjct: 442 FHSVLKEVQALLDKGHQLYVICAAVNANESGLKVRNVYDTQRNLAKVFPNYTVALIHGQM 501 Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585 +KE++M+ F + ++L++TTV+EVG++ V+A+ +II +++ FGL+ LHQLRGR+ R Sbjct: 502 KSQEKEAIMNQFYSNQIQILVSTTVVEVGMNCVNATGMIIYDSDRFGLSTLHQLRGRIQR 561 Query: 586 GEEISSCILLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643 G + C LL S++ T RL VL ++DGF I+E+DL+ R G+ILG++QSG+P Sbjct: 562 GNDQGYCWLLSR---SQDELTIERLEVLVKSDDGFYISEQDLRLRGPGDILGLRQSGLPS 618 Query: 644 FLIAQPELHDSLLEIARKDAKHIL 667 F++ + ++ A+ DA+ IL Sbjct: 619 FVLGNLIEDTAFIDQAKLDAQEIL 642 >gi|327399690|ref|YP_004340559.1| DEAD/DEAH box helicase domain-containing protein [Hippea maritima DSM 10411] gi|327182319|gb|AEA34500.1| DEAD/DEAH box helicase domain protein [Hippea maritima DSM 10411] Length = 716 Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 196/568 (34%), Positives = 300/568 (52%), Gaps = 36/568 (6%) Query: 88 RPYKILLNDGTGEITLLFFYRKTEMLKNVFFE---GRKITVTGKIKKLKNRIIMVHPHYI 144 R +LLN I +F R T +K + G +I GK + + + HP I Sbjct: 116 RVLSVLLNSKGVHIRCNWF-RLTPYIKRMLSSIKPGDEIVCLGKASRDGFLLQLNHPKLI 174 Query: 145 ----FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP-EWIEKDLLQKKSF 199 F S+ + +P I GL K +A+ LP P +++ ++ K + Sbjct: 175 KAKEFEPSKRIVYPNI--------GLRNTTIAKAKEKAMLMLPKRPFDYLPYSVISKNNL 226 Query: 200 PSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259 P + E F H D S ++R Y+E+ + L L K+ ++ I + Sbjct: 227 PLLDEFFE--HLKSDGAD----SSIQKRQKYEEMFFLLLGLRLQEKRLTQKTAPSIETQA 280 Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319 ++ +++PF T Q AI +IL+DM++ MLR+LQGDVG GKT+VALI AA++ Sbjct: 281 DFLDEVKKHLPFELTNGQIQAIGEILKDMTRSKPMLRLLQGDVGCGKTVVALICALAALK 340 Query: 320 AGGQAVIMAPIGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375 A Q IMAP LA Q + + + K+ T ++V + ++I G+ Sbjct: 341 ANYQVAIMAPTQPLAVQFFLQADKLLAKFKFKTSLLVS------STKKKESVYQKIKSGE 394 Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435 ++GTHAL ++ +++ L +I+DEQHRFGV+QR L+ K PH+LLM+ATPIPR+L Sbjct: 395 IDCVVGTHALIEEQVEFKNLGFIIIDEQHRFGVEQRKNLSSKGKFPHLLLMSATPIPRSL 454 Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495 + +S I EKPA R IKT+ N+ E + L++ + Y I P IEE Sbjct: 455 SMVLYSKTSLSTIKEKPANRGKIKTLHFYKNKRQEAYKIAIDELNKKHQVYVIAPLIEES 514 Query: 496 KE-SNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552 + ++R+ ++ L + F + ++HG++ +K++++ FK G LI+TTVIE Sbjct: 515 EHFEDYRAAIKLHEELKDGFFKGFRVELLHGKLKPEEKDAILKDFKEGAIDCLISTTVIE 574 Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612 VGID A++IIIENA+ FGL+QLHQLRGRVGR S IL+ + LS + R+ L Sbjct: 575 VGIDSPLATVIIIENADRFGLSQLHQLRGRVGRSSFDSYAILITNNNLSDTAKKRIEALL 634 Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSG 640 T+DGF IA+ D + R GEILG +Q G Sbjct: 635 KTDDGFEIAQIDFQLRGSGEILGTRQHG 662 >gi|294787301|ref|ZP_06752554.1| ATP-dependent DNA helicase RecG [Parascardovia denticolens F0305] gi|315227140|ref|ZP_07868927.1| DNA helicase RecG [Parascardovia denticolens DSM 10105] gi|294484657|gb|EFG32292.1| ATP-dependent DNA helicase RecG [Parascardovia denticolens F0305] gi|315119590|gb|EFT82723.1| DNA helicase RecG [Parascardovia denticolens DSM 10105] Length = 749 Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 228/699 (32%), Positives = 347/699 (49%), Gaps = 73/699 (10%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKI--LLNDGTGE 100 D L Y+P D R I +I + + + + + RR Y++ ++DG Sbjct: 32 DALTYYPFRVADPLPRGSIRQIKVGQKTAFAAKVRRVRTSSMNSRRGYRVEVQVDDGDAA 91 Query: 101 ITLLFF-YRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ---DV--- 151 + +FF Y+K + L F E R + G+ + HP + + DV Sbjct: 92 ASFVFFSYKKHYVDWLLGKFREKRLLVAAGEASIYGGSLQFTHPQVLMVGQEPGMDVATT 151 Query: 152 --NFPLI---EAVYSLPTGLSVDLFKKIIVEALSRLPVL-----PEWIEKDLLQKKSFPS 201 F + + VY + +S + + I L +P+L P+ I +++ ++ Sbjct: 152 EEGFARLTEPQPVYHTSSRISSEHIHESI---LGLIPLLDPDSVPDIIPEEVRKEWGLLH 208 Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG-- 259 +A IH P ++F W R +E L Q ALL R++ ++ + E Sbjct: 209 RFDALKAIHKPGTTEEF-WKGIGSMR--SEEALVSQTALLQEREKMRESKSFACSGEAGE 265 Query: 260 -KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318 + Q+ ++++PF T Q+ I+ I DM Q M R+LQG+VGSGKT+VAL +M A Sbjct: 266 EDLVQRFIQSLPFKLTAGQKEVIERIQADMGQAYPMSRLLQGEVGSGKTVVALASMLRAA 325 Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII--TGNMPQAHRRKALERIAHGQA 376 +AG QA+++AP +LAQQH+E I+ I + ++ TGNM A RRKAL A G Sbjct: 326 QAGYQALLVAPTQVLAQQHHESIRAMLTQAGIDLPLVLLTGNMRLADRRKALAIPASGVP 385 Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLLMTATPIPRTL 435 I I THA F S Q +L L ++DEQHRFGV+QR + Q A PH+L+MTATPIPR+ Sbjct: 386 CIAIATHAAFSHSFQAPRLALEVIDEQHRFGVEQRETIRQAADVIPHLLVMTATPIPRSA 445 Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPIN---RIDEVIERLKVVLSEGKKAYWICPQI 492 +T G++DIS +TE P+GRKPI +V++ + + ++ + + G++ Y ICP+I Sbjct: 446 AMTWFGNLDISWLTELPSGRKPITSVVVRESDGRTMGQMFLHARKRIEAGERVYVICPRI 505 Query: 493 EEKKES-------------------------------NFRSVVERFNSLHEHFTSSIAII 521 +E + + + +R +L + I I+ Sbjct: 506 DEDQVDEDSQGGEDLLPLQFDQEGLPLDSSAPSQPLHSVEEMSQRLAALPQFQGVRIGIL 565 Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581 GR + K + M F G LL+ATTVIEVG+DV AS III +++HFGL+QLHQLRG Sbjct: 566 TGRDDEESKAAAMKDFTQGRAPLLVATTVIEVGVDVPQASCIIIFDSDHFGLSQLHQLRG 625 Query: 582 RVGRGEEISSCILLYHPPLSKN---SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG--- 635 RVGRG S + LS + RL V+++T DG IA+ DL R G++LG Sbjct: 626 RVGRGGTRSWAFFVTRVDLSDPDSLAARRLEVVRSTTDGAEIAKADLDLRGAGDVLGDSQ 685 Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 + F + + L+ AR A+ IL DP LT Sbjct: 686 SGGQSISSFKLLRVVKDADLITRARSQAESILRADPALT 724 >gi|172040463|ref|YP_001800177.1| ATP-dependent DNA helicase [Corynebacterium urealyticum DSM 7109] gi|171851767|emb|CAQ04743.1| ATP-dependent DNA helicase [Corynebacterium urealyticum DSM 7109] Length = 742 Score = 289 bits (740), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 174/472 (36%), Positives = 273/472 (57%), Gaps = 21/472 (4%) Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 EA +P P ++ L + A IH P + E A ERL ++E L Sbjct: 230 EASDSVPAWPTGVDGAPLIR-----FDAALRGIHQPPE----EGPGAAIERLKFNEALEL 280 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+ + L + ++ + ++ + ++P+ ++ Q+SA + + + Sbjct: 281 QLIMALRAADATRRTSPRVDALHSELLAAFIHSLPYRLSEGQKSAWDRVAEALDSSEPAN 340 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 +LQGDVGSGKTL+A +AM AA +AG Q +AP +LA QH + + + + I + ++ Sbjct: 341 LMLQGDVGSGKTLIAALAMVAAADAGLQCAFIAPTEVLAVQHAQTLTRLVEGLPITITVL 400 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 TG+ R ++L I GQAHI++GTHAL QDS++++ L LV+VDEQHRFGV+QR L Sbjct: 401 TGSQSSDVRHRSLLDIISGQAHIVVGTHALIQDSVEFFNLGLVVVDEQHRFGVRQRDYLK 460 Query: 416 QKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---ID 469 KA A PH+L+MTATPIPR++ +T GD++ + P+GR ++T ++ R +D Sbjct: 461 NKAAAGKTPHMLVMTATPIPRSVAMTMFGDLEPIFLPGLPSGRGEVRTAVVQAGRRAWVD 520 Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTSSIAIIHGRMSDI 528 + +R+ ++ G +A+ + P+IE E + E+ S H T + ++HG+M+ Sbjct: 521 RMWQRISEDVAAGHQAFVVVPRIE--GEDGVLAWAEKLASGPLAHCT--VDVLHGKMAPE 576 Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588 +K + M F G +L+ATTVIEVG+DV +A++++I +AE+FG++QLHQLRGR+GRG Sbjct: 577 EKAAAMAGFAEGRTDVLVATTVIEVGVDVPNATVMVIIDAENFGVSQLHQLRGRIGRGSA 636 Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 C+L SY RL + T DGF +AE DL+QR EG+ILG QSG Sbjct: 637 DGWCMLHTTALPGSASYDRLESVAATTDGFALAELDLEQRTEGDILGDDQSG 688 >gi|257068997|ref|YP_003155252.1| RecG-like helicase [Brachybacterium faecium DSM 4810] gi|256559815|gb|ACU85662.1| RecG-like helicase [Brachybacterium faecium DSM 4810] Length = 739 Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 207/714 (28%), Positives = 354/714 (49%), Gaps = 65/714 (9%) Query: 22 KYSLFLSKIINCGNANE-----TRFID-LLFYHPSSFIDRHYRPKISEISE-ERIVTITG 74 + S+ LS+++N + R +D +L + P ++ + EI + E + I Sbjct: 9 RGSMPLSELLNSTESRAMASFGVRDLDTMLRFAPRRYVVPAPLRSLREIHQGEEVSAIVE 68 Query: 75 YISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEML---KNVFFEGRKITVTGKI 129 S H ++ R + ++ ++DGT + L FF K + ++ +I V G + Sbjct: 69 VTSVHDR-AMRSRHGFILEVTVSDGTETLPLTFFLTKKHQVQWHRDRLPVKARILVRGTV 127 Query: 130 --KKLKNRIIMVHPHY--IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184 + + + HP Y + Q + VY L +S + + L Sbjct: 128 GYDDYRGALQLAHPDYEPVEDTPQGRAWAQRPRPVYPLRRNISQKTMRAATEKGLEFADS 187 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 L + + +L ++ P +AEA ++H P +D T L ++E Q R Sbjct: 188 LTRPVPEKVLSRRGLPPLAEAAQLVHRPLTVED---TRRGLAHLRFEEAFVLQAIFAQRR 244 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 Q ++ + EG + + +PF T+ Q I++ + + + +LQGDVGS Sbjct: 245 AQDERTPAPVLAAEGPLQGLFDQRLPFILTEGQREIGASIVERIGRGHPTSVLLQGDVGS 304 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE----FIKKYTQNTQII-------VE 353 GKT+VAL AM AV++G QA ++AP +LA+QH+ + + ++ Q+ V Sbjct: 305 GKTVVALRAMLRAVDSGHQAALLAPTEVLAEQHHRTLTTLLGELSRAGQLDAHPEATRVR 364 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++TG+ AHRR+ L + GQA I++GTHAL +++++ L LV++DEQHRFGV R + Sbjct: 365 LLTGSQRTAHRRETLLDVTSGQAGIVVGTHALLTENVEFASLGLVVIDEQHRFGVDHRRR 424 Query: 414 LTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII----PIN 466 L K A PHV++MTATPIPRT L ++GD+D+ + E P R + + ++ P Sbjct: 425 LRTKGPAGQSPHVIVMTATPIPRTAALATVGDLDVLTLRESPGQRAGVTSFVVHEKLPAW 484 Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKE---------------------SNFRSVVE 505 + +R ++ ++ + +C +I+E + R V + Sbjct: 485 E-QRMWQRAAEEIAADRQVFVVCARIDEDDAADDAPAPPVLDEYGRPQAPALAPARGVTQ 543 Query: 506 RFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 L E + + ++HGR++ +K+ +M G LL++TTVIEVG+DV +AS+ Sbjct: 544 TARRLAERAELAGARLGVLHGRLTGEEKQEIMGQMVRGEIDLLVSTTVIEVGVDVPNASV 603 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622 +II +AE FG++QLHQLRGRVGRGE + + L + + DGF +AE Sbjct: 604 MIILDAERFGVSQLHQLRGRVGRGEHAGIAFFDTSAEVGREHSAHLQRVADAADGFALAE 663 Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTS 675 DL +R G+++G +QSG+ + L L D+ +E AR+DA ++ DP+LT+ Sbjct: 664 LDLHRRGAGDLVGEEQSGLQRTLTHLDVLRDAQAIERAREDAFAVVAADPELTA 717 >gi|325846657|ref|ZP_08169572.1| putative ATP-dependent DNA helicase RecG [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481415|gb|EGC84456.1| putative ATP-dependent DNA helicase RecG [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 659 Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 182/530 (34%), Positives = 294/530 (55%), Gaps = 24/530 (4%) Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ-----DVNFPLIEAVYSLPTGLSVDLFK 172 F RK+ + G+ K +I+ Y HN + D I +Y L ++ Sbjct: 95 FSPRKLKL-GQSYKFYTKIVKNGYEYECHNPEFTDIDDGRIGNIVPIYPLTKSITNKNLS 153 Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232 I +AL+ ++KD+L K SF IH P + A+ + + Sbjct: 154 DFIDQALNFFDQNEILLDKDILDKFSFSDKLSNLKEIHFPTS---LDRLKKAKSEIKIID 210 Query: 233 LLAGQIALLLMRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 L I + +M+K+ +++ + +++ KIL ++ F TKSQ +++ +IL D + Sbjct: 211 FLKELIFIYVMQKENSYQDLNLKFDLD-----KILNSLDFKLTKSQYNSLVEILNDCTSS 265 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351 N M R+L GDVGSGKT++ALIAM Q+ +M P +LA Q +E K ++ + Sbjct: 266 NIMNRLLCGDVGSGKTIIALIAMIIFSLNSYQSCMMVPTEVLAIQQFEKNKNLIESFGLR 325 Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411 VE++T + K E+I +GQ I+IGTHAL D +++ L L++ DEQHRFGV+QR Sbjct: 326 VELLTSSTKNKDSVK--EKIKNGQIDIVIGTHALIVDDVEFKNLKLIVADEQHRFGVRQR 383 Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471 L +K + L MTATPIPRTL L + +S+ITE P GR + T ++ ++ D + Sbjct: 384 QALYEKGNKANYLTMTATPIPRTLFLKMKNLLSLSQITELPKGRGQVITELVLMSMEDSL 443 Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDK 530 ++ L++G++ Y + I + E++ ++ +R+ + FT I +HG++ +K Sbjct: 444 FSKISNFLNQGRQVYVVSDSINSEDENSVENLYKRYKT---KFTDKRIEKLHGKLKADEK 500 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 E+++ F +G +LI+TTVIEVGIDV +A+ ++I NA +FGL+ LHQLRGR+GRGE S Sbjct: 501 ENILKEFSDGKIDVLISTTVIEVGIDVSNANCMVIYNANNFGLSSLHQLRGRIGRGEHES 560 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 C L+ + ++L+++KN+ DGF IA++DLK R G+IL Q G Sbjct: 561 FCYLVSKKI---DQRSKLNIIKNSNDGFEIAKKDLKLRGAGKILSTIQHG 607 >gi|306992335|gb|ADN19284.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 451 Score = 287 bits (734), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 172/458 (37%), Positives = 274/458 (59%), Gaps = 14/458 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 2 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ + A+ R Y EL Sbjct: 60 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEA---YLEQAKYRFKYQELFLL 116 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 117 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 173 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKV 413 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 M+ F NG +L++TTVIEVG++V +A+++I+ENAE F Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAERF 451 >gi|306992251|gb|ADN19242.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 448 Score = 287 bits (734), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 175/456 (38%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 QK P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 QKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448 >gi|306992245|gb|ADN19239.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 449 Score = 286 bits (733), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 175/456 (38%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 2 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 60 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 117 QMALFLMKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 173 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 QK P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 294 QKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449 >gi|323342033|ref|ZP_08082266.1| DNA helicase RecG [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464458|gb|EFY09651.1| DNA helicase RecG [Erysipelothrix rhusiopathiae ATCC 19414] Length = 652 Score = 286 bits (732), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 177/511 (34%), Positives = 281/511 (54%), Gaps = 16/511 (3%) Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215 I+ +YS +G+ +++I++ + + LP I + + +A IH PR Sbjct: 127 IKPIYSQKSGIKQYEIERLILKIMENVS-LPNIIPVEFQDQYKLMDRFDAVKSIHMPRSE 185 Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275 + L Y+E LA +++ L +E G+ E + + +PF T Sbjct: 186 TELHH---GLRTLKYEEFLAYHLSITLNNSD--REYGVSKLFERAKVLEEIEILPFKLTV 240 Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 Q+ ++ DIL D+ +M R+LQGDVGSGKT+VA +A A AG Q M P +L Sbjct: 241 DQKQSLDDILNDLESSKKMNRLLQGDVGSGKTVVAFLAAYANYLAGYQVAFMVPTELLLM 300 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQA--HRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 QH +K + +V + Q HR ++ I G+A +I GTHALFQ + ++ Sbjct: 301 QHVRSFQKLFPDINCVV------LSQGIDHRDDVIQAIGTGEASVIFGTHALFQKDVVFH 354 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L L I+DEQHRFGV+QR L K L+++ATPIPRTL + D+D+S I P+ Sbjct: 355 NLGLAIIDEQHRFGVEQRRALITKGKRIDTLMLSATPIPRTLAASLFFDLDVSTIATYPS 414 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 RK I+T I N + +++ + L ++ Y +C IEE + + ++V +L Sbjct: 415 HRKEIETHWIHENSLRSIMKPIHDRLKNQEQIYIVCAAIEEGERAGVKNVHTICENLKPV 474 Query: 514 FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 F+S ++ +HG+M K S M SF +G +LI+T+VIEVG+DV +A+++II NAE FG Sbjct: 475 FSSYNVDFVHGKMPSELKASKMQSFVSGDIDILISTSVIEVGLDVHNANMMIIYNAEQFG 534 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632 LA LHQLRGRVGRG + C LL + ++ R++ L ++ DGF ++ D++ R G+ Sbjct: 535 LATLHQLRGRVGRGGKQGVCYLLSSNESDETAH-RMNALVSSHDGFELSMIDMRLRGFGD 593 Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 +LG +QSG+P F++ +++L+ A+ DA Sbjct: 594 VLGQRQSGLPNFILGDIIKDENILKQAKTDA 624 >gi|302669007|ref|YP_003832832.1| ATP-dependent DNA helicase RecG2 [Butyrivibrio proteoclasticus B316] gi|302397347|gb|ADL36250.1| ATP-dependent DNA helicase RecG2 [Butyrivibrio proteoclasticus B316] Length = 668 Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 182/534 (34%), Positives = 292/534 (54%), Gaps = 28/534 (5%) Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177 F G+ + V G++K +V P +F + + N ++ +Y G +K I E Sbjct: 97 FIGKNVLVCGEMKYEYGSYKIVGPA-VFTDDVENNKRVL-PIYPKVAGTKPFYVRKKIYE 154 Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237 S L + + D +K + I+ + +HNP ++ + A ERL Y+++ Sbjct: 155 --SCLEGEEDSLPSDFKKKHNLAGISWSLYELHNPSSYQNLK---KAEERLLYEDMFYFA 209 Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 L+ ++ + NV + + + ++ T Q+SA I M+ + + Sbjct: 210 ALNELVNRKDEPNCAPMANVS--LCMLLTQRFGYALTPDQQSAFFKISSYMTNGQHLRAL 267 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 +QGDVG GKT++A +AMA AV +G QA++MAP +LA+QH +KK + + G Sbjct: 268 VQGDVGCGKTIIAFLAMAQAVGSGKQAILMAPTKVLAEQHANQLKKLLPEYEDKIYYAGG 327 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 P +K L++I G+ I+GTHAL + + Y +V++DE+H+FGV QR ++ Sbjct: 328 KAP---LKKDLKKIETGEYLFIVGTHALISEKVHYKDPGIVVIDEEHKFGVDQRSAFEKQ 384 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGD-IDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 H + M+ATPIPRTL T GD ++ I KP GRKP+ TV + D + ++ Sbjct: 385 KKGIHSISMSATPIPRTLAKTIYGDGTEVFIIRTKPNGRKPVFTVY---DNGDNIPLYVR 441 Query: 477 VVLSEGKKAYWICPQIE---EKKES--NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531 LS ++ Y +CP IE EK E + + E++ S +I I++G+MS D + Sbjct: 442 TALSRNEQVYVVCPAIEVDDEKMEGVVSVKDAAEKYASWFPDI--NIGILNGKMSAADTK 499 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 V+D FKNG ++LI+TTV+EVG+DV +A++I+++NAE FGLA +HQLRGRVGRG + S Sbjct: 500 KVLDDFKNGVTRILISTTVVEVGVDVPNATLIVLQNAERFGLAGMHQLRGRVGRGSKQSC 559 Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645 C+L +S R+ L +T DGF IA+ DL+ RK G + G++QSG K++ Sbjct: 560 CML-----ISAQENPRIHTLCSTTDGFEIAKMDLEMRKSGSLFGLEQSGFNKYV 608 >gi|306992463|gb|ADN19348.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 450 Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 172/458 (37%), Positives = 274/458 (59%), Gaps = 14/458 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ + A+ R Y EL Sbjct: 59 ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNE---AYLEQAKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 M+ F NG +L++TTVIEVG++V +A+++I+ENAE + Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAERW 450 >gi|306992219|gb|ADN19226.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992221|gb|ADN19227.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992223|gb|ADN19228.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 450 Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 174/458 (37%), Positives = 273/458 (59%), Gaps = 14/458 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 QK P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 QKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAERL 450 >gi|317506526|ref|ZP_07964323.1| ATP-dependent DNA helicase RecG [Segniliparus rugosus ATCC BAA-974] gi|316255165|gb|EFV14438.1| ATP-dependent DNA helicase RecG [Segniliparus rugosus ATCC BAA-974] Length = 760 Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 214/725 (29%), Positives = 360/725 (49%), Gaps = 115/725 (15%) Query: 55 RHY-----RP------KISEISEERIVTITGYISQHSSFQLQKRRPYK----ILLNDGTG 99 RHY RP +++++ E VT+ + + S + K P K + ++DG Sbjct: 36 RHYPRDYARPGQLLGNRLAQVGEH--VTLIAEVRKKSVMRF-KNDPSKKRMVLSVSDGIN 92 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI--------------- 144 ++FF K + + EG++ G++ N++ + HP +I Sbjct: 93 VYEVVFFNPK-KWTQEKLEEGQRYMFDGEVSMYANKLQLAHPGFILLPDPDAREQGVQEP 151 Query: 145 -------------FHNSQDVNFPL--------IEAVYSLPTGLSVDLFKKIIVEALSRLP 183 + S D + L + AVY +S ++ + L +L Sbjct: 152 GAGKITGVGQIAAYARSVDPSLQLDPSEWRSELMAVYPASKNVSSWDVRRYVEAVLDQLA 211 Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 +P+ + + + ++ F + E+ +H P + + A++RL +DE LA Q+A Sbjct: 212 PVPDPLTEAMRAERGFLGLEESLRAVHTPESQ---DQVNRAKDRLRFDEALAVQLAFAKR 268 Query: 244 RKQFKKEIGIPIN--VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 R K + +GK+A K +PF T+ Q +A +I D++ M R++ G+ Sbjct: 269 RAALAKAKALACQPLADGKVA-KFEARLPFQLTEDQRAARDEIDADLATSKPMSRLVHGE 327 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQI 350 VGSGKT+V+L+AM V+AG Q ++AP +LA QH+ ++K + Sbjct: 328 VGSGKTVVSLLAMLRVVDAGAQCAMLAPTEVLAAQHHATLRKLLGPLGRGGELDGDPDGL 387 Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410 + ++TG+M A R+ AL ++ G+A I++GTHAL + + + L L++VDEQHRFGV Q Sbjct: 388 KIVLLTGSMGAAARKAALAQVVSGEASIVVGTHALLSEKVMFADLGLLVVDEQHRFGVDQ 447 Query: 411 RLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467 R L + PH+L+MTATPIPRT+ +T G++++S I P R I + ++ R Sbjct: 448 RDALRGRGVDGRLPHLLVMTATPIPRTVAMTVFGELEVSTIKHLPKNRAGISSSVVDEKR 507 Query: 468 ----IDEVIERLKVVLSEGKKAYWICPQIEE--------------------KKESNFRSV 503 + V ER++ +EG++AY +C +I++ K R+V Sbjct: 508 KPDWVRRVWERMREEAAEGRQAYVVCARIQDKEKEEEKKPAKAKPKPAPEQKGPPPPRAV 567 Query: 504 VERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 V+ F L + + ++HG + +K+ M SF +G ++L++TTVIEVG+DV +++ Sbjct: 568 VDVFEELSSGPLAGLRLGLMHGGLPPAEKDKAMASFASGETQVLVSTTVIEVGVDVPNST 627 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621 +++I +A+ FG++QLHQLRGRVGRG CI + S RL + + DGF +A Sbjct: 628 MMVILDADRFGISQLHQLRGRVGRGGHPGLCIFVTR--AGGASLDRLQSVASCMDGFELA 685 Query: 622 EEDLKQRKEGEILGIKQSGMPKFL-----------IAQP-ELHDSLLEIARKDAKHILTQ 669 E DLK R EG+++G+ QSG + L IA E+ D+L E A+ +A T Sbjct: 686 ELDLKIRGEGDVIGVAQSGRSRSLRLLSVTRDEEIIADAREVADALAEGAQGEALLAETL 745 Query: 670 DPDLT 674 D LT Sbjct: 746 DSVLT 750 >gi|306992253|gb|ADN19243.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 447 Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 174/455 (38%), Positives = 272/455 (59%), Gaps = 14/455 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 QK P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 QKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMTDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 M+ F NG +L++TTVIEVG++V +A+++I+ENA Sbjct: 413 MEEFVNGEIDILVSTTVIEVGVNVPNATVMIVENA 447 >gi|306992391|gb|ADN19312.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 449 Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 173/457 (37%), Positives = 273/457 (59%), Gaps = 14/457 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L KK I A I+ P+ E A+ R Y EL Sbjct: 59 ALKDYVQEVEEFFDEEFLFKKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAER 449 >gi|306992427|gb|ADN19330.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992429|gb|ADN19331.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992447|gb|ADN19340.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992449|gb|ADN19341.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992451|gb|ADN19342.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992469|gb|ADN19351.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992471|gb|ADN19352.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 448 Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 173/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448 >gi|306992243|gb|ADN19238.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 448 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 174/456 (38%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 QK P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 QKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448 >gi|306992225|gb|ADN19229.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992227|gb|ADN19230.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992229|gb|ADN19231.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992231|gb|ADN19232.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992233|gb|ADN19233.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 449 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 174/456 (38%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 QK P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 QKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448 >gi|262195552|ref|YP_003266761.1| DEAD/DEAH box helicase [Haliangium ochraceum DSM 14365] gi|262078899|gb|ACY14868.1| DEAD/DEAH box helicase domain protein [Haliangium ochraceum DSM 14365] Length = 782 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 221/740 (29%), Positives = 359/740 (48%), Gaps = 91/740 (12%) Query: 9 LFAPLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFID-RHYRPKISEIS 65 L AP++T G+G S L++ + G DLL+ P + D R P I+ Sbjct: 29 LDAPVTTLPGIGPSLSARLAERGLHTLG--------DLLWLVPRRYDDARRVTPLGQAIA 80 Query: 66 EER----IVTITGYISQHSSFQLQKRRPY---KILLNDGTGEITLLFFYRKTEMLKNVFF 118 E R T T + S F + R+ + ++ D L+ ++ E L F Sbjct: 81 EARREPSARTTTLGVVLASRFHRRGRKRWFDARLAGTDDPEARLLVRWFGARESLAKRFP 140 Query: 119 EGRKITVTGKIK------KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFK 172 +G ++ ++G++ +++N I+ ++ +P G++ Sbjct: 141 KGARVVLSGRLDCRTVGAEMQNPDILATTTAGGDRVSTAGGDILTRYPDVP-GVAAATLA 199 Query: 173 KIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK-----------AKDFEW 220 K EA+ R L + + + L + ++EA +H P + D W Sbjct: 200 KACREAVRRGLSQVVDAVPAALAARLDLVPLSEALRHLHEPPAGLSVDEVAALDSADSAW 259 Query: 221 TSPARERLAYDEL--LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 RLA++EL L +A + + + P + A+ + R +P+ T +Q+ Sbjct: 260 ----HRRLAFEELFLLGLVVARRRHLHRLGRAVPCPALPWQERAELLGRALPYQLTGAQQ 315 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 AI+ I +++++ M R+LQGDVG+GKT VA A A AG Q MAP +LA+QH Sbjct: 316 RAIEIIGRELAEAVPMNRLLQGDVGAGKTAVAFAAAQQACSAGRQVAFMAPTALLAEQHA 375 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + ++T P+ R + L + Q ++IGTHAL + + + L LV Sbjct: 376 ATLMPWCIALGMRATLLTAATPRKTRAEVLALLRAHQLDLVIGTHALLSEGVDFAALGLV 435 Query: 399 IVDEQHRFGVQQRLKLTQKA------------------------TAPHVLLMTATPIPRT 434 I+DEQHRFGV QR+ L K +PH+L+MTATPIPRT Sbjct: 436 IIDEQHRFGVAQRVGLRAKGEGEGDSAVPDENVRSSEKDASDAGGSPHLLVMTATPIPRT 495 Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIP-INRIDEVIERLKVVLSEGKKAYWICPQIE 493 L LT+ GD+D++ + E P GR+P +T+++ + D ++ L G++ + +CP +E Sbjct: 496 LALTAYGDLDVTVLDELPPGRQPPRTLVLAGSDGRDRAHAMVRERLQAGERIFVVCPLVE 555 Query: 494 -------------------EKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESV 533 + ++ + ER L F + + ++HGRM +++ V Sbjct: 556 PAEGERDAETAPADSLQGQAQARADATTTAER---LQRTFAPARVGLVHGRMVQAERDRV 612 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M F+ G +L+ATTVIEVG+DV +A++++I A FGLAQLHQLRGRVGRG S C+ Sbjct: 613 MGDFRAGRVDILVATTVIEVGVDVPEATVMVILEAHCFGLAQLHQLRGRVGRGGGSSLCL 672 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 L+ + + RL+ + T DGF IAEEDL+ R GE+LG++QSG+P+ H Sbjct: 673 LMTRRQRTAEAEQRLATMAATCDGFRIAEEDLRLRGPGELLGVRQSGLPRLRFGDLRAHG 732 Query: 654 SLLEIARKDAKHILTQDPDL 673 +LL AR A+ +L DP+L Sbjct: 733 ALLVAARDAAETLLAADPEL 752 >gi|306992495|gb|ADN19364.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 449 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 173/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448 >gi|306992465|gb|ADN19349.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 449 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 173/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448 >gi|306992239|gb|ADN19236.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992241|gb|ADN19237.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 451 Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 174/458 (37%), Positives = 273/458 (59%), Gaps = 14/458 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 2 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 60 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 117 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 173 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 QK P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 294 QKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAERL 451 >gi|306992249|gb|ADN19241.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 449 Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 174/456 (38%), Positives = 272/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 2 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 60 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 117 QMALFLMKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 173 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++ GDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 174 RLVHGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 QK P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 294 QKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449 >gi|306992393|gb|ADN19313.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 449 Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 173/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 2 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L KK I A I+ P+ E A+ R Y EL Sbjct: 60 ALKDYVQEVEEFFDEEFLFKKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 117 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 173 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449 >gi|306992237|gb|ADN19235.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 449 Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 174/456 (38%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 2 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 60 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 117 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 173 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 QK P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 294 QKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449 >gi|306992305|gb|ADN19269.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992307|gb|ADN19270.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992315|gb|ADN19274.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992331|gb|ADN19282.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 448 Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448 >gi|306992485|gb|ADN19359.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992487|gb|ADN19360.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 448 Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448 >gi|306992441|gb|ADN19337.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 449 Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 2 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ + A+ R Y EL Sbjct: 60 ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNE---AYLEQAKYRFKYQELFLL 116 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 117 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 173 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449 >gi|306992489|gb|ADN19361.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 449 Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448 >gi|306992313|gb|ADN19273.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 449 Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448 >gi|306992333|gb|ADN19283.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 449 Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448 >gi|306992309|gb|ADN19271.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 450 Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448 >gi|306992295|gb|ADN19264.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992317|gb|ADN19275.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992321|gb|ADN19277.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992323|gb|ADN19278.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 449 Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 2 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 60 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 117 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 173 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKV 413 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449 >gi|306992325|gb|ADN19279.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992327|gb|ADN19280.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 450 Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 2 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 60 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 117 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 173 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKV 413 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449 >gi|306992297|gb|ADN19265.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992301|gb|ADN19267.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992303|gb|ADN19268.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 450 Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 2 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 60 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 117 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 173 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKV 413 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449 >gi|306992479|gb|ADN19356.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 449 Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 2 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 60 ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 117 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 173 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449 >gi|306992247|gb|ADN19240.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 442 Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 174/450 (38%), Positives = 270/450 (60%), Gaps = 14/450 (3%) Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRL 182 GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ AL + Sbjct: 1 NGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYV 58 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 + E+ +++ L +K I A I+ P+ E A+ R Y EL Q+AL L Sbjct: 59 QEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLLQMALFL 115 Query: 243 MRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 M++ K + GI VE K L +PF T +Q +K+I+ DM+ M R++QGD Sbjct: 116 MKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLVQGD 172 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + +++G++ Sbjct: 173 VGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISP 232 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LTQK P Sbjct: 233 SNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTQKGENP 292 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E + + Sbjct: 293 DVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKK 352 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKN 539 G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE VM+ F N Sbjct: 353 GRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFVN 412 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAE 569 G +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 GKIDILVSTTVIEVGVNVPNATVMIVENAE 442 >gi|306992493|gb|ADN19363.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 445 Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 173/451 (38%), Positives = 271/451 (60%), Gaps = 14/451 (3%) Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SR 181 + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ AL Sbjct: 3 INGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDY 60 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 + + E+ +++ L +K I A I+ P+ E A+ R Y EL Q+AL Sbjct: 61 VQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKHRFKYQELFLLQMALF 117 Query: 242 LMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M R++QG Sbjct: 118 LVKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLVQG 174 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + +++G++ Sbjct: 175 DVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSIS 234 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LTQK Sbjct: 235 PSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTQKGEN 294 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E + Sbjct: 295 PDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVK 354 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFK 538 +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE VM+ F Sbjct: 355 KGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFV 414 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 415 NGKIDILVSTTVIEVGVNVPNATVMIVENAE 445 >gi|296393416|ref|YP_003658300.1| DEAD/DEAH box helicase domain-containing protein [Segniliparus rotundus DSM 44985] gi|296180563|gb|ADG97469.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM 44985] Length = 764 Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 194/647 (29%), Positives = 331/647 (51%), Gaps = 90/647 (13%) Query: 82 FQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140 F+ R+ +L ++DGT ++FF K + + +G++ G++ +++ + H Sbjct: 74 FKSDPRKMRMVLKVSDGTNVYEVVFFNPK-KWTQEKLNKGQRYMFDGEVSTYGSKLQLAH 132 Query: 141 PHYI---------------------FHNSQDVNFPL--------IEAVYSLPTGLSVDLF 171 P +I + S D L + AVY +S Sbjct: 133 PGFILLPDAPAAVDGKVTGSGQIAAYARSVDPELQLDPSEWRSELMAVYPASKNVSSWDL 192 Query: 172 KKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231 ++ I L RL + + + + + ++ F + +A +HNP + E + A+ RL +D Sbjct: 193 RRHIGTVLDRLAPIEDPLTESMRAQRGFLGLEQALRAVHNP---QSVEQVAAAQARLRFD 249 Query: 232 ELLAGQIALLLMRKQFKKEIG--IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289 E LA Q A R P + +G +A K +PF T+ Q++ +I D++ Sbjct: 250 EALAVQFAFAKRRAALAHATALACPPSPQGSVA-KFESRLPFQLTEDQQAVRCEIDADLA 308 Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY----- 344 + M R+L G+VGSGKT+V+L+AM ++AG Q ++AP +LA QH+ ++K Sbjct: 309 KPVPMSRLLHGEVGSGKTVVSLLAMLRVIDAGCQCALLAPTEVLAAQHHATLRKLLGPLG 368 Query: 345 ------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + ++TG+M A R+ AL ++A G+A+I+IGTHAL + + + L LV Sbjct: 369 RGGELDGDPDGLRIVLLTGSMGAAARKAALAQVASGEANIVIGTHALLSEKVVFADLGLV 428 Query: 399 IVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 +VDEQHRFGV QR L + PH+L+MTATPIPRT+ +T G++++S I P R Sbjct: 429 VVDEQHRFGVDQRDALRGRGAGGRLPHLLVMTATPIPRTVAMTVFGELEVSTIKRLPTNR 488 Query: 456 KPIKTVIIPINRIDEVI----ERLKVVLSEGKKAYWICPQIEE----KKESN-------- 499 + + ++ R E + ER++ +S G++AY +C +I++ +K+S+ Sbjct: 489 AGVTSSVVDEKRKPEWLRRAWERVREEVSAGRQAYVVCARIQDPGAQEKDSDAAKDKKTG 548 Query: 500 -------------------FRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFK 538 R+ V+ L + + ++HG + +K+ M SF Sbjct: 549 AAKKPAKPKQPEEKKGPPPPRAAVDVHAELSGGALAGVRLGLMHGALPAAEKDQAMASFS 608 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G ++L++TTVIEVG+DV +++++++ +A+ FG++QLHQLRGRVGRGE C L+ Sbjct: 609 AGETQVLVSTTVIEVGVDVPNSTVMVVLDADRFGISQLHQLRGRVGRGEHPGLC--LFTT 666 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645 L + RL + DGF +AE DLK R EG+++G+ QSG + L Sbjct: 667 RLGGAALARLEQVAACLDGFELAELDLKIRGEGDVIGVAQSGRSRSL 713 >gi|306992491|gb|ADN19362.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 447 Score = 283 bits (725), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 173/455 (38%), Positives = 272/455 (59%), Gaps = 14/455 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKHRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 QK P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 QKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 M+ F NG +L++TTVIEVG++V +A+++I+ENA Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENA 447 >gi|306992467|gb|ADN19350.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 447 Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 172/451 (38%), Positives = 271/451 (60%), Gaps = 14/451 (3%) Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SR 181 + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ AL Sbjct: 5 INGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDY 62 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 + + E+ +++ L +K I A I+ P+ E A+ R Y EL Q+AL Sbjct: 63 VQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLLQMALF 119 Query: 242 LMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M R++QG Sbjct: 120 LMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLVQG 176 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + +++G++ Sbjct: 177 DVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSIS 236 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT+K Sbjct: 237 PSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGEN 296 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E + Sbjct: 297 PDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVK 356 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFK 538 +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE VM+ F Sbjct: 357 KGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFV 416 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 417 NGKIDILVSTTVIEVGVNVPNATVMIVENAE 447 >gi|306992187|gb|ADN19210.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 450 Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 173/458 (37%), Positives = 273/458 (59%), Gaps = 14/458 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAERL 450 >gi|306992337|gb|ADN19285.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992343|gb|ADN19288.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992349|gb|ADN19291.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992351|gb|ADN19292.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992367|gb|ADN19300.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992369|gb|ADN19301.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 448 Score = 283 bits (724), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALKDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 MEEFANGKIDILVSTTVIEVGVNVPNATVMIVENAE 448 >gi|306992211|gb|ADN19222.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 449 Score = 283 bits (724), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 173/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448 >gi|306992365|gb|ADN19299.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 450 Score = 283 bits (724), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 172/457 (37%), Positives = 273/457 (59%), Gaps = 14/457 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 2 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 60 ALKDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 117 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 173 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 414 MEEFANGKIDILVSTTVIEVGVNVPNATVMIVENAER 450 >gi|306992189|gb|ADN19211.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992191|gb|ADN19212.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992193|gb|ADN19213.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992195|gb|ADN19214.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992197|gb|ADN19215.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 449 Score = 283 bits (724), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 173/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448 >gi|212696071|ref|ZP_03304199.1| hypothetical protein ANHYDRO_00607 [Anaerococcus hydrogenalis DSM 7454] gi|212676700|gb|EEB36307.1| hypothetical protein ANHYDRO_00607 [Anaerococcus hydrogenalis DSM 7454] Length = 439 Score = 283 bits (724), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 155/378 (41%), Positives = 236/378 (62%), Gaps = 9/378 (2%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 KIL ++ F TKSQ +++ +IL D S N M R+L GDVGSGKT+VALIAM Q Sbjct: 18 KILNSLDFKLTKSQYNSLSEILDDCSSSNIMNRLLCGDVGSGKTIVALIAMIIFSLNSYQ 77 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 A +M P +LA Q +E K ++ + VE++T + K E+I +GQ I+IGTH Sbjct: 78 ACMMVPTEVLAIQQFEKNKNLIESFGLRVELLTSSTKNKDSVK--EKIKNGQIDIVIGTH 135 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443 AL D +++ L L++ DEQHRFGV+QR L +K + L MTATPIPRTL L + Sbjct: 136 ALIVDDVEFKNLKLIVADEQHRFGVRQRQALYEKGNKANYLTMTATPIPRTLFLKMKNLL 195 Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503 +S+ITE P GR + T ++ ++ D + ++ L++G++ Y + I+ + E++ ++ Sbjct: 196 SLSQITELPKGRGQVITELVLMSMEDSLFSKISNFLNQGRQVYVVSDSIDSEDENSVENL 255 Query: 504 VERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 +R+ + FT I +HG++ +KE+++ F +G +LI+TTVIEVGIDV +A+ Sbjct: 256 YKRYKT---KFTDKRIEKLHGKLKADEKENILKEFSDGKIDVLISTTVIEVGIDVSNANC 312 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622 ++I NA +FGL+ LHQLRGR+GRGE S C L+ + ++L+++KN+ DGF IA+ Sbjct: 313 MVIYNANNFGLSSLHQLRGRIGRGEHESFCYLVSKKI---DQRSKLNIIKNSNDGFEIAK 369 Query: 623 EDLKQRKEGEILGIKQSG 640 +DLK R G+IL Q G Sbjct: 370 KDLKLRGAGKILSTIQHG 387 >gi|306992359|gb|ADN19296.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992361|gb|ADN19297.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992363|gb|ADN19298.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 449 Score = 283 bits (724), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 2 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 60 ALKDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 117 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 173 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 414 MEEFANGKIDILVSTTVIEVGVNVPNATVMIVENAE 449 >gi|306992443|gb|ADN19338.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992445|gb|ADN19339.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 447 Score = 283 bits (724), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 172/455 (37%), Positives = 272/455 (59%), Gaps = 14/455 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 M+ F NG +L++TTVIEVG++V +A+++I+ENA Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENA 447 >gi|306992199|gb|ADN19216.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992201|gb|ADN19217.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992203|gb|ADN19218.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992205|gb|ADN19219.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992207|gb|ADN19220.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992213|gb|ADN19223.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992215|gb|ADN19224.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992265|gb|ADN19249.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 448 Score = 283 bits (724), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 173/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448 >gi|306992345|gb|ADN19289.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992347|gb|ADN19290.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992353|gb|ADN19293.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992355|gb|ADN19294.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992357|gb|ADN19295.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 449 Score = 283 bits (724), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 172/457 (37%), Positives = 273/457 (59%), Gaps = 14/457 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALKDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 MEEFANGKIDILVSTTVIEVGVNVPNATVMIVENAER 449 >gi|306992339|gb|ADN19286.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 449 Score = 283 bits (724), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALKDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 MEEFANGKIDILVSTTVIEVGVNVPNATVMIVENAE 448 >gi|306992269|gb|ADN19251.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 451 Score = 283 bits (724), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 172/458 (37%), Positives = 273/458 (59%), Gaps = 14/458 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 2 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 60 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 117 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 173 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAERL 451 >gi|306992473|gb|ADN19353.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 449 Score = 283 bits (723), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 173/456 (37%), Positives = 272/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ + I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 2 GEEYIINGKLQFKYGQEIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 60 ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 117 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 173 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449 >gi|306992183|gb|ADN19208.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 451 Score = 283 bits (723), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 173/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 2 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 60 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 117 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 173 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449 >gi|306992271|gb|ADN19252.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992277|gb|ADN19255.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 450 Score = 283 bits (723), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 172/458 (37%), Positives = 273/458 (59%), Gaps = 14/458 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAERL 450 >gi|306992439|gb|ADN19336.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 448 Score = 283 bits (723), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 172/455 (37%), Positives = 272/455 (59%), Gaps = 14/455 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 2 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 60 ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 117 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 173 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 M+ F NG +L++TTVIEVG++V +A+++I+ENA Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENA 448 >gi|306992263|gb|ADN19248.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 449 Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 173/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 2 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 60 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 117 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 173 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449 >gi|306992255|gb|ADN19244.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 450 Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 173/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 2 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 60 ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 117 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 173 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449 >gi|306992275|gb|ADN19254.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992279|gb|ADN19256.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 449 Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448 >gi|306992281|gb|ADN19257.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992291|gb|ADN19262.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 448 Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448 >gi|306992481|gb|ADN19357.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 447 Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 171/455 (37%), Positives = 272/455 (59%), Gaps = 14/455 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 M+ F NG +L++TTVIEVG++V +A+++I+ENA Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENA 447 >gi|306992395|gb|ADN19314.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992397|gb|ADN19315.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992399|gb|ADN19316.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 448 Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALKDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448 >gi|306992311|gb|ADN19272.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 445 Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 171/451 (37%), Positives = 271/451 (60%), Gaps = 14/451 (3%) Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SR 181 + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ AL Sbjct: 3 INGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDY 60 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 + + E+ +++ L +K I A I+ P+ E A+ R Y EL Q+AL Sbjct: 61 VQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLLQMALF 117 Query: 242 LMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M R++QG Sbjct: 118 LMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLVQG 174 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + +++G++ Sbjct: 175 DVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSIS 234 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT+K Sbjct: 235 PSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGEN 294 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E + Sbjct: 295 PDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVK 354 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFK 538 +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE VM+ F Sbjct: 355 KGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKVMEEFV 414 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 415 NGKIDILVSTTVIEVGVNVPNATVMIVENAE 445 >gi|306992329|gb|ADN19281.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 447 Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 171/455 (37%), Positives = 272/455 (59%), Gaps = 14/455 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 M+ F NG +L++TTVIEVG++V +A+++I+ENA Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENA 447 >gi|310830985|ref|YP_003966086.1| ATP-dependent DNA helicase RecG [Paenibacillus polymyxa SC2] gi|309250452|gb|ADO60018.1| ATP-dependent DNA helicase RecG [Paenibacillus polymyxa SC2] Length = 664 Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 196/620 (31%), Positives = 322/620 (51%), Gaps = 38/620 (6%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 +L Y P + D I ++ + +V + G I + ++ ++ K+ ++D +G + Sbjct: 26 ELSRYFPRKYHDFRTITPIKQLKDGEVVAVVGKIQEIKRYE---KKFIKVKVSDDSGGVL 82 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKK-LKNRII-MVHPHYIFHNSQDVNFPLIEAVY 160 + ++ K + K EG GK+++ LK R MV+P Y H + + + VY Sbjct: 83 HVIWFHKPYVHK-WLKEGETYIFCGKVQEDLKFRSKNMVNPLYFSHEIK--HLQRLVPVY 139 Query: 161 SLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220 G++ + I +LS + E +E +L +A IH P + E Sbjct: 140 PKIRGMADEYLMNSIQSSLSVMS-QQENLEPSVLATFGLLKSGKALKAIHQPENEDELER 198 Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280 A+ R +D+L + + + +N + + +R +PF T Q Sbjct: 199 ---AKTRFIFDDLFEYSMQMHQYESLSSSKSPFLMN-QFSVVTDFMRRLPFELTDGQREV 254 Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340 ++ I R+ ++QGDVG GKT+VA++ M A E G Q+ +MAP +LA+QHYE Sbjct: 255 LRSISLKAKLGQRVNALVQGDVGCGKTIVAILLMVVAAENGFQSALMAPTHVLAKQHYEE 314 Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400 + + + T V +TG+ ++ L + G+ H+I+GTH++ ++ L L IV Sbjct: 315 LAERLKGTSFKVAFLTGDTKIREKKAILNGLDTGEIHMIVGTHSIIGKDVKIPNLALSIV 374 Query: 401 DEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGD-IDISKITEKPAGRKPI 458 DE+HRFGV QR +L +KA H + M+ATPIPRTL L GD +D+ I P GRKP+ Sbjct: 375 DEEHRFGVVQRNQLREKARQGVHHISMSATPIPRTLALAMWGDQVDVYTIKTLPKGRKPV 434 Query: 459 KTVIIP-----INRIDEVIERLKVVLSEGKKAYWICPQIEEKKE---SNFRSVVERFNSL 510 +TV++ N I++ IE+ G +AY +CP IE+ + S+ SV + F + Sbjct: 435 RTVLLSDEKRCFNGIEQQIEK-------GHQAYVVCPLIEDSESESMSDVDSVEKTFEKM 487 Query: 511 HEHFTSS----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 +HF+ + I++I G+M + + F +LI+TT+IEVG++V +A++++++ Sbjct: 488 KQHFSRNPKVKISLISGKMKPAEIAEEILRFTRNETNVLISTTIIEVGVNVPNATMMVVK 547 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626 NAE FGLAQLHQLRGRVGRG S C+L H K +L + T DGF IA+ DL+ Sbjct: 548 NAERFGLAQLHQLRGRVGRGNFESFCVL--HS--EKEGNPKLQAMVETTDGFKIAKRDLE 603 Query: 627 QRKEGEILGIKQSGMPKFLI 646 R G+ +G KQSG +++ Sbjct: 604 LRGTGDFIGTKQSGDNNYVM 623 >gi|306992235|gb|ADN19234.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 447 Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 173/455 (38%), Positives = 272/455 (59%), Gaps = 14/455 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 QK P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 QKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 M+ F NG +L++TTVIEVG++V +A+++I+ENA Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENA 447 >gi|306992285|gb|ADN19259.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 450 Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 2 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 60 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 117 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 173 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449 >gi|306992289|gb|ADN19261.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 449 Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448 >gi|306992483|gb|ADN19358.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 448 Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 171/455 (37%), Positives = 272/455 (59%), Gaps = 14/455 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 2 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 60 ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 117 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 173 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 M+ F NG +L++TTVIEVG++V +A+++I+ENA Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENA 448 >gi|306992455|gb|ADN19344.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992459|gb|ADN19346.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 442 Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 172/450 (38%), Positives = 270/450 (60%), Gaps = 14/450 (3%) Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRL 182 GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ AL + Sbjct: 1 NGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYV 58 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 + E+ +++ L +K I A I+ P+ E A+ R Y EL Q+AL L Sbjct: 59 QEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLLQMALFL 115 Query: 243 MRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 M++ K + GI VE K L +PF T +Q +K+I+ DM+ M R++QGD Sbjct: 116 MKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLVQGD 172 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + +++G++ Sbjct: 173 VGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISP 232 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT+K P Sbjct: 233 SNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGENP 292 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E + + Sbjct: 293 DVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKK 352 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKN 539 G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE VM+ F N Sbjct: 353 GRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFVN 412 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAE 569 G +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 GKIDILVSTTVIEVGVNVPNATVMIVENAE 442 >gi|306992453|gb|ADN19343.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 448 Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 172/456 (37%), Positives = 272/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVI VG++V +A+++I+ENAE Sbjct: 413 MEEFVNGKIDILVSTTVIGVGVNVPNATVMIVENAE 448 >gi|306992287|gb|ADN19260.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 450 Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 2 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 60 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 117 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 173 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449 >gi|306992457|gb|ADN19345.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 443 Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 172/450 (38%), Positives = 270/450 (60%), Gaps = 14/450 (3%) Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRL 182 GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ AL + Sbjct: 1 NGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYV 58 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 + E+ +++ L +K I A I+ P+ E A+ R Y EL Q+AL L Sbjct: 59 QEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLLQMALFL 115 Query: 243 MRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 M++ K + GI VE K L +PF T +Q +K+I+ DM+ M R++QGD Sbjct: 116 MKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLVQGD 172 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + +++G++ Sbjct: 173 VGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISP 232 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT+K P Sbjct: 233 SNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGENP 292 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E + + Sbjct: 293 DVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKK 352 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKN 539 G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE VM+ F N Sbjct: 353 GRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFVN 412 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAE 569 G +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 GKIDILVSTTVIEVGVNVPNATVMIVENAE 442 >gi|306992217|gb|ADN19225.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 442 Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 173/450 (38%), Positives = 270/450 (60%), Gaps = 14/450 (3%) Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRL 182 GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ AL + Sbjct: 1 NGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYV 58 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 + E+ +++ L +K I A I+ P+ E A+ R Y EL Q+AL L Sbjct: 59 QEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLLQMALFL 115 Query: 243 MRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +++ K + GI VE K L +PF T +Q +K+I+ DM+ M R++QGD Sbjct: 116 VKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLVQGD 172 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + +++G++ Sbjct: 173 VGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISP 232 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LTQK P Sbjct: 233 SNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTQKGENP 292 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E + + Sbjct: 293 DVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKK 352 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKN 539 G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE VM+ F N Sbjct: 353 GRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFVN 412 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAE 569 G +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 GKIDILVSTTVIEVGVNVPNATVMIVENAE 442 >gi|306992401|gb|ADN19317.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992407|gb|ADN19320.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992419|gb|ADN19326.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992421|gb|ADN19327.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992423|gb|ADN19328.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 448 Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 172/456 (37%), Positives = 272/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + KKI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIKKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALKDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F N +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 MEEFVNREIDILVSTTVIEVGVNVPNATVMIVENAE 448 >gi|306992425|gb|ADN19329.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 449 Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 172/457 (37%), Positives = 272/457 (59%), Gaps = 14/457 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + KKI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIKKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALKDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 M+ F N +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 MEEFVNREIDILVSTTVIEVGVNVPNATVMIVENAER 449 >gi|306992341|gb|ADN19287.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 447 Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 171/455 (37%), Positives = 272/455 (59%), Gaps = 14/455 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALKDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 M+ F NG +L++TTVIEVG++V +A+++I+ENA Sbjct: 413 MEEFANGKIDILVSTTVIEVGVNVPNATVMIVENA 447 >gi|306992409|gb|ADN19321.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992413|gb|ADN19323.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992415|gb|ADN19324.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992417|gb|ADN19325.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 449 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 171/456 (37%), Positives = 272/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + KKI+ Sbjct: 2 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIKKIMFN 59 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ + A+ R Y EL Sbjct: 60 ALKDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEA---YLEQAKYRFKYQELFLL 116 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 117 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 173 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F N +L++TTVIEVG++V +A+++I+ENAE Sbjct: 414 MEEFVNREIDILVSTTVIEVGVNVPNATVMIVENAE 449 >gi|306992185|gb|ADN19209.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 447 Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 172/451 (38%), Positives = 271/451 (60%), Gaps = 14/451 (3%) Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SR 181 + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ AL Sbjct: 5 INGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDY 62 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 + + E+ +++ L +K I A I+ P+ E A+ R Y EL Q+AL Sbjct: 63 VQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLLQMALF 119 Query: 242 LMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M R++QG Sbjct: 120 LVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLVQG 176 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + +++G++ Sbjct: 177 DVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSIS 236 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT+K Sbjct: 237 PSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGEN 296 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E + Sbjct: 297 PDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVK 356 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFK 538 +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE VM+ F Sbjct: 357 KGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFV 416 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 417 NGKIDILVSTTVIEVGVNVPNATVMIVENAE 447 >gi|306992209|gb|ADN19221.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992261|gb|ADN19247.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992267|gb|ADN19250.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 447 Score = 281 bits (718), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 172/455 (37%), Positives = 272/455 (59%), Gaps = 14/455 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 M+ F NG +L++TTVIEVG++V +A+++I+ENA Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENA 447 >gi|306992299|gb|ADN19266.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 446 Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 170/450 (37%), Positives = 270/450 (60%), Gaps = 14/450 (3%) Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SR 181 + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ AL Sbjct: 5 INGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDY 62 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 + + E+ +++ L +K I A I+ P+ E A+ R Y EL Q+AL Sbjct: 63 VQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLLQMALF 119 Query: 242 LMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M R++QG Sbjct: 120 LMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLVQG 176 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + +++G++ Sbjct: 177 DVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSIS 236 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT+K Sbjct: 237 PSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGEN 296 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E + Sbjct: 297 PDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVK 356 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFK 538 +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE VM+ F Sbjct: 357 KGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKVMEEFV 416 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENA 568 NG +L++TTVIEVG++V +A+++I+ENA Sbjct: 417 NGKIDILVSTTVIEVGVNVPNATVMIVENA 446 >gi|306992181|gb|ADN19207.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 444 Score = 280 bits (717), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 172/450 (38%), Positives = 270/450 (60%), Gaps = 14/450 (3%) Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRL 182 GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ AL + Sbjct: 1 NGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYV 58 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 + E+ +++ L +K I A I+ P+ E A+ R Y EL Q+AL L Sbjct: 59 QEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLLQMALFL 115 Query: 243 MRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 +++ K + GI VE K L +PF T +Q +K+I+ DM+ M R++QGD Sbjct: 116 VKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLVQGD 172 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + +++G++ Sbjct: 173 VGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISP 232 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT+K P Sbjct: 233 SNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGENP 292 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E + + Sbjct: 293 DVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKK 352 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKN 539 G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE VM+ F N Sbjct: 353 GRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFVN 412 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAE 569 G +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 GKIDILVSTTVIEVGVNVPNATVMIVENAE 442 >gi|306992461|gb|ADN19347.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 441 Score = 280 bits (717), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 171/449 (38%), Positives = 269/449 (59%), Gaps = 14/449 (3%) Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRL 182 GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ AL + Sbjct: 1 NGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYV 58 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242 + E+ +++ L +K I A I+ P+ E A+ R Y EL Q+AL L Sbjct: 59 QEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLLQMALFL 115 Query: 243 MRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 M++ K + GI VE K L +PF T +Q +K+I+ DM+ M R++QGD Sbjct: 116 MKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLVQGD 172 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361 VGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + +++G++ Sbjct: 173 VGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISP 232 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT+K P Sbjct: 233 SNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGENP 292 Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481 VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E + + Sbjct: 293 DVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKK 352 Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKN 539 G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE VM+ F N Sbjct: 353 GRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFVN 412 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENA 568 G +L++TTVIEVG++V +A+++I+ENA Sbjct: 413 GKIDILVSTTVIEVGVNVPNATVMIVENA 441 >gi|306992475|gb|ADN19354.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 430 Score = 280 bits (716), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 168/432 (38%), Positives = 260/432 (60%), Gaps = 12/432 (2%) Query: 144 IFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFP 200 + S+D +N I +Y L GL+ + +KI+ AL + + E+ +++ L +K Sbjct: 5 VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYVQEVEEFFDEEFLFEKGLM 64 Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEG 259 I A I+ P+ E A+ R Y EL Q+AL LM++ K + GI VE Sbjct: 65 DIKNALININFPQNEAYLEQ---AKYRFKYQELFLLQMALFLMKRSVKGKKGIKFERVEL 121 Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319 K L +PF T +Q +K+I+ DM+ M R++QGDVGSGKT+VA +M A++ Sbjct: 122 K---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLVQGDVGSGKTVVAACSMYIAIK 178 Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379 G Q +MAP ILA+QHY +K+ +NT I + +++G++ +++++ LE+I +G I+ Sbjct: 179 NGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISPSNKKEVLEKIKNGDYDIV 238 Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439 IGTHAL +D + + L L I DEQHRFGV+QR LT+K P VL+MTATPIPRTL L Sbjct: 239 IGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGENPDVLVMTATPIPRTLALIL 298 Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499 GD+DIS I + P GRK +KT +I + + E + +G++ Y +CP IEE + N Sbjct: 299 YGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKKGRQVYVVCPLIEESDKIN 358 Query: 500 FRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557 S + +++ + + ++HG+M+D DKE VM+ F NG +L++TTVIEVG++V Sbjct: 359 AMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFVNGKIDILVSTTVIEVGVNV 418 Query: 558 VDASIIIIENAE 569 +A+++I+ENAE Sbjct: 419 PNATVMIVENAE 430 >gi|306992371|gb|ADN19302.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 448 Score = 280 bits (716), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 171/456 (37%), Positives = 272/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALKDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F NG +L++TTVI VG++V +A+++I+ENAE Sbjct: 413 MEEFVNGKIDILVSTTVIGVGVNVPNATVMIVENAE 448 >gi|306992405|gb|ADN19319.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 447 Score = 280 bits (716), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 170/455 (37%), Positives = 271/455 (59%), Gaps = 14/455 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + KKI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIKKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ + A+ R Y EL Sbjct: 59 ALKDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNE---AYLEQAKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 M+ F N +L++TTVIEVG++V +A+++I+ENA Sbjct: 413 MEEFVNREIDILVSTTVIEVGVNVPNATVMIVENA 447 >gi|257066532|ref|YP_003152788.1| helicase domain-containing protein [Anaerococcus prevotii DSM 20548] gi|256798412|gb|ACV29067.1| helicase domain protein [Anaerococcus prevotii DSM 20548] Length = 663 Score = 280 bits (715), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 198/641 (30%), Positives = 324/641 (50%), Gaps = 45/641 (7%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L++ +G+G K S ++ + DL Y+P + DR I +I + Sbjct: 3 LTSLKGIGDKKSKDFKRL------GISSVSDLYNYYPREYEDRSKLKSIVDIDDNN---- 52 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNV---FFEGR---KITVT 126 Y + S +L ++ N G I+ ++ + + +N+ +F R + V Sbjct: 53 KHYFVRKISSRLYQK-------NFGKMTISYIYAFEEKSQFRNIRLIWFNDRFTPRRLVR 105 Query: 127 GKIKKLKNRIIMVHPHY-----IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181 G+ K + + Y +F D I ++Y L G+S ++ + AL+ Sbjct: 106 GRTYKFYTSVSKKNAFYEAGNPLFCEMDDDEIGSIASIYPLTKGISNKQIRQFMSRALAY 165 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 E + +L+ S + IH P E + A+ ++ +LL L Sbjct: 166 FDRREEILSDTILEGFSLNKRYDNLKEIHFPTSV---EGLTKAKSQIKIVDLLKDLCFLD 222 Query: 242 LMRKQ--FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 ++ + F+++I + ++ +IL + F+ T+SQ +++IL D R+L Sbjct: 223 FLKSKTKFRQDIDLAYKLD-----EILSELSFTLTRSQRRVLEEILDDCKSPYTANRLLV 277 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVGSGKT+VA++ M G Q+ +M P +LA Q +E + + ++TG+ Sbjct: 278 GDVGSGKTIVAIVIMIIFALNGYQSAMMVPTELLAIQQFEKNIELFDKFNVRAALLTGSS 337 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + K E + +G+ I+IGTHA+ + + + L V+ DEQHRFGV QR L K Sbjct: 338 KDKDKLK--EDLKNGKIDILIGTHAIIVEDVDFNNLKFVVNDEQHRFGVSQRQMLALKGD 395 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 A + L MTATPIPRTL L ID+S I E P GRKPI T ++ ++I+ + E++ + Sbjct: 396 AVNYLTMTATPIPRTLSLKISEIIDLSIINELPKGRKPIMTRLLGSDKIEILYEKINQTI 455 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 EG++ Y + I+ +++ ++ + + + + IAI+HG+M DKE ++ F Sbjct: 456 REGRQIYVVSNNIDSDDKNSLENLYKIYKNRFPRY--RIAILHGKMKAKDKEDILGDFNK 513 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G +L+ATTVIEVGIDV +A+ +II NA +FGL+ LHQLRGRVGRGE S C L+ P Sbjct: 514 GKIDILLATTVIEVGIDVANANTMIIYNANNFGLSTLHQLRGRVGRGEYESYCYLISDNP 573 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 N +L+VL + DGF IA++D +QR G+IL Q G Sbjct: 574 SPSN---KLNVLVESNDGFEIAKKDYEQRGGGKILSYLQHG 611 >gi|306992257|gb|ADN19245.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 446 Score = 279 bits (714), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 171/454 (37%), Positives = 271/454 (59%), Gaps = 14/454 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 M+ F NG +L++TTVIEVG++V +A+++I+EN Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVEN 446 >gi|306992373|gb|ADN19303.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992377|gb|ADN19305.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 448 Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 171/456 (37%), Positives = 272/456 (59%), Gaps = 14/456 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALKDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 M+ F N +L++TTVIEVG++V +A+++I+ENAE Sbjct: 413 MEEFVNREIDILVSTTVIEVGVNVPNATVMIVENAE 448 >gi|306992283|gb|ADN19258.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 450 Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 171/457 (37%), Positives = 272/457 (59%), Gaps = 14/457 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 2 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 60 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 117 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 173 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + + ++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 354 MKEVKKRRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 M+ F NG +L++TTVIEVG++V +A+++I+ENAE Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAER 450 >gi|306992389|gb|ADN19311.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 446 Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 170/454 (37%), Positives = 271/454 (59%), Gaps = 14/454 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALKDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 M+ F NG +L++TTVIEVG++V +A+++I+EN Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVEN 446 >gi|306992273|gb|ADN19253.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 446 Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 170/454 (37%), Positives = 271/454 (59%), Gaps = 14/454 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 M+ F NG +L++TTVIEVG++V +A+++I+EN Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVEN 446 >gi|329936750|ref|ZP_08286457.1| ATP-dependent DNA helicase RecG [Streptomyces griseoaurantiacus M045] gi|329303980|gb|EGG47863.1| ATP-dependent DNA helicase RecG [Streptomyces griseoaurantiacus M045] Length = 989 Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 158/402 (39%), Positives = 239/402 (59%), Gaps = 31/402 (7%) Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY----EFIKKYTQNTQI-------IVEI 354 T+VAL AM A V+ GGQA ++AP +LAQQH+ E + Q + V + Sbjct: 566 NTMVALRAMLAVVDCGGQAAMLAPTEVLAQQHHRSVTEMMGDLAQGGMLGGAEHATKVVL 625 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 +TG+M A RR+AL + G+A I+IGTHAL +D+++++ L LV+VDEQHRFGV+QR L Sbjct: 626 LTGSMGTAARRQALLDLVTGEAGIVIGTHALIEDAVRFHDLGLVVVDEQHRFGVEQRDAL 685 Query: 415 TQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----ID 469 K PH+L+MTATPIPRT+ +T GD++ S + + PAGR PI + ++P + Sbjct: 686 RGKGEQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAADKPHFLA 745 Query: 470 EVIERLKVVLSEGKKAYWICPQI-EEKKESNFRSVVERFN-------SLHEHFTSS---- 517 ER++ + G +AY +CP+I +E E ++ E + E + Sbjct: 746 RAWERVREEVENGHQAYVVCPRIGDEADEVRKKAAAEGERRPPLAVLDVAEQLVAGPLRG 805 Query: 518 --IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + ++HGRM DK++VM F G +L+ATTVIEVG++V +A+ ++I +A+ FG++Q Sbjct: 806 LRVEVLHGRMPPEDKDAVMRRFAAGETDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQ 865 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 LHQLRGRVGRG C+L+ P + + RL + T DGF ++ DL+QR+EG++LG Sbjct: 866 LHQLRGRVGRGAAPGLCLLVTEMPEASAARQRLGAVAATLDGFELSRIDLEQRREGDVLG 925 Query: 636 IKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTSV 676 QSG L + D ++ AR++A ++ DP L SV Sbjct: 926 QAQSGARSSLRVLAVIEDEEIIAEARQEATELVAADPALESV 967 Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 75/324 (23%), Positives = 133/324 (41%), Gaps = 34/324 (10%) Query: 3 PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62 P+ PL PL + +G + +++ + DLL ++P + +R ++ Sbjct: 5 PALDEPLKQPLRSV--LGPATAKVMAEHLGLHTVG-----DLLHHYPRRYEERGQLTHLA 57 Query: 63 EISEERIVTITGYISQ---HSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEMLKN 115 ++ + VT+ ++ H+ + R ++ + DG+G + L+FF Sbjct: 58 DLPMDEHVTVVAQVADARLHTFASCRAPRGKGQRLEVTITDGSGRLQLVFFGNGVHKPHK 117 Query: 116 VFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN----------FPLIEAVYSLPTG 165 G + +GK+ R+ + HP Y + PL A + + Sbjct: 118 ELLPGTRAMFSGKVSVFNRRLQLAHPAYELLRGEGAEEAVDSWAGALIPLYPATAKMESW 177 Query: 166 LSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR 225 + ++ A L LPE L + ++ EA IH PR D E AR Sbjct: 178 KLAKAVQTVLPSAQEALDPLPE----SLRAGRGLATLPEALVKIHRPRTRADVE---DAR 230 Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIP--INVEGKIAQKILRNIPFSPTKSQESAIKD 283 RL +DE Q+AL R + +P EG + R +PF+ T+ Q + ++ Sbjct: 231 ARLKWDEAFVLQVALARRRHDDAQLRAVPRKPRAEGLLTAFDAR-LPFTLTEGQRTVSRE 289 Query: 284 ILQDMSQKNRMLRILQGDVGSGKT 307 I D++ + M R+LQG+VGSGK Sbjct: 290 IFDDLATAHPMHRLLQGEVGSGKA 313 >gi|306818557|ref|ZP_07452280.1| possible DNA helicase RecG [Mobiluncus mulieris ATCC 35239] gi|304648730|gb|EFM46032.1| possible DNA helicase RecG [Mobiluncus mulieris ATCC 35239] Length = 819 Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 211/708 (29%), Positives = 315/708 (44%), Gaps = 140/708 (19%) Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI---------IMVHPHYIFHNSQ 149 G +T+ FF + L+ K T+ KL R+ + HP Y Sbjct: 100 GRLTVRFFAKHPAALQFHASRLEKGTIGVFAGKLSGRVDGFGGSGEAFLAHPEYQVLQDY 159 Query: 150 DVNF---------PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP 200 D PL A LP+ + +I L+ + +PE I +DL + P Sbjct: 160 DPEVARELSLRPQPLYHATAGLPSWK----IEGLITTILAGVEEIPEAIPEDLRARWGLP 215 Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ--FKKEIGIPINVE 258 + AEA +H+P E A + L Y E L AL R+Q + P V Sbjct: 216 TAAEALQWLHHPPDEASHEC---ALDYLRYREALTLGAALAKARQQARLRPAWASPAEVN 272 Query: 259 GK---------------------------------------------IAQKILRNIPFSP 273 G + ++ L +PF Sbjct: 273 GNGVISADSSPGGGSAGASGGGSGVMRCHSETAATSDKVDISGGGKTLVERFLAQLPFEL 332 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T Q A ++I DM+ + M R+LQG+VGSGKT++A +A AV+ G QA MAP +L Sbjct: 333 TAGQLRAWQEISADMATEVPMNRLLQGEVGSGKTVIAALAAITAVQNGCQAAFMAPTEVL 392 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQ--------------AHRRKALER-IAHGQAHI 378 A QH+E +KK N + G P+ A + AL+ + G+ I Sbjct: 393 AHQHFETLKKLLGNLGCSPSGLDGTKPEGDVVGLRLLVGSTPAKEKSALQTALQTGEPLI 452 Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVL 437 ++GTHAL S+++ KL L +VDEQHRFGV+QR+ L APH L MTATPIPRT+ + Sbjct: 453 VVGTHALLSKSVKFSKLGLAVVDEQHRFGVEQRVALLAAGQRAPHFLAMTATPIPRTVAM 512 Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQ--- 491 T GD+D+S + E P GR +KT ++ + + V + E G + Y +C Q Sbjct: 513 TVFGDLDVSVLAEIPRGRGEVKTFLVSEDNVAWVARAWRRAAEEILDGGRVYVLCAQKAP 572 Query: 492 -------IEEKKES---------------------------------NFRSVVERFNSLH 511 EK ++ N R +L Sbjct: 573 HEPVPGDTAEKPDTAPLAKPTTTVPLEEEFGGASGNVPTLAPGRVLHNVEDTFRRLQALP 632 Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 ++I +H + K+ + F +G LL++TTVIEVG+DV +AS++II +A+ F Sbjct: 633 FFADTTITWVHSGLDSGAKQRAIADFVSGVAPLLVSTTVIEVGMDVPEASMMIILDADRF 692 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLS---KNSYTRLSVLKNTEDGFLIAEEDLKQR 628 GL+QLHQLRGR+GRG C+ + PLS + RL +T DGF +AE DL+ R Sbjct: 693 GLSQLHQLRGRIGRGVRPGVCLAIA--PLSLADTPARERLEAFASTRDGFALAEADLRIR 750 Query: 629 KEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTS 675 EG++LG Q+G L + D+ ++E A++ A+ I+T+D L + Sbjct: 751 HEGDVLGDTQAGRNSRLQVLSLVQDAKIIEAAKQAAEEIVTEDAQLAN 798 >gi|306992383|gb|ADN19308.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992385|gb|ADN19309.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 447 Score = 277 bits (708), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 170/455 (37%), Positives = 271/455 (59%), Gaps = 14/455 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALKDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 M+ F N +L++TTVIEVG++V +A+++I+ENA Sbjct: 413 MEEFVNREIDILVSTTVIEVGVNVPNATVMIVENA 447 >gi|257791106|ref|YP_003181712.1| helicase domain-containing protein [Eggerthella lenta DSM 2243] gi|317488170|ref|ZP_07946742.1| ATP-dependent DNA helicase RecG [Eggerthella sp. 1_3_56FAA] gi|257475003|gb|ACV55323.1| helicase domain protein [Eggerthella lenta DSM 2243] gi|316912715|gb|EFV34252.1| ATP-dependent DNA helicase RecG [Eggerthella sp. 1_3_56FAA] Length = 734 Score = 276 bits (707), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 216/680 (31%), Positives = 349/680 (51%), Gaps = 62/680 (9%) Query: 43 DLLFYHPSSFIDRHYRPKISE--ISEERIVTITGYISQHSSFQLQKRRPYKIL----LND 96 DL + P +ID + ++ I E+ T+ G + + +L+K +P L L D Sbjct: 43 DLATHFPRRYIDLSRKATVAAGVIGEQ--CTVEGAVHE---IKLKKPKPRLTLVELSLVD 97 Query: 97 GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI 156 GTG + ++ +R+ ++ V G +I V GK++ M +P+ + + +I Sbjct: 98 GTG-VLMVTCFRQPWLMDQVK-PGMRIAVAGKLEFNYGFKRMTNPYLEVLDGEGAAEGMI 155 Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216 V+ +S ++++ AL + L + + +L K S A + IH P Sbjct: 156 IPVHPACEKISAAWMRRLVGNALEAVCGLHDPLPLELRAKYRLMSRGAALSCIHFPHA-- 213 Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI-PI--NVEGKIAQKILRNIPFSP 273 + + AR RL Y+ELL + L+LMR+ ++ G P+ V+G + +PF Sbjct: 214 -MDEVAEARRRLVYEELL--LLELMLMRESRERTDGCEPVVHAVDGPRMAALAEAVPFRL 270 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T QE A +DIL ++ +L GDVG+GKT+VA A+AAA + G QA++MAP +L Sbjct: 271 TDEQEEAKRDILAALAAPQTANHLLLGDVGTGKTVVAAFALAAAADTGAQALLMAPTEVL 330 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QH + + I ++TG+ P A R L R+A G ++IGTHAL +D + Sbjct: 331 ARQHGKSLGPLFDAAGISWAVLTGSTPSAEREAVLARVAEGSVDVLIGTHALLEDDVAPR 390 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 +L LV++DEQ RFGV+QR KL K AP L +TATPIPR+L L G++ +S + +P Sbjct: 391 RLSLVVIDEQQRFGVEQRAKLLAKGDAPDALYLTATPIPRSLALALFGNLTLSYLKHRPH 450 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI------EEKKESNFRSVVERF 507 T + + + L+ G++ Y +CP I + K ++ S R Sbjct: 451 DAAQRATFVHQKADRGHAYDAARAALARGEQVYVVCPLIGQDSGERDAKAADGGSGGRRR 510 Query: 508 NSLHEHFTSS----------------------------------IAIIHGRMSDIDKESV 533 + E + + + ++HGRM +K++V Sbjct: 511 EADEEAYEYAAISIETDDDLEGDDVAAAAKEASYLQGTVFADYRVELLHGRMPASEKQAV 570 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M F++ ++L+ATTVIEVG+DV +A+++I+E+A+ FGL+QLHQLRGRVGRGE+ + + Sbjct: 571 MQRFRDNETQVLVATTVIEVGVDVPNATVMIVEDADRFGLSQLHQLRGRVGRGEKAAE-V 629 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 L S + TRLS + +T+DGF +A DL R+EG+ILG +Q G + Sbjct: 630 HLVSASKSDAALTRLSAMVDTDDGFELASYDLSLRREGDILGNRQHGASGLKLVNVMRDG 689 Query: 654 SLLEIARKDAKHILTQDPDL 673 +++E A DA IL +DP+L Sbjct: 690 AVIEAAHADAAAILEEDPNL 709 >gi|269792872|ref|YP_003317776.1| helicase domain-containing protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100507|gb|ACZ19494.1| helicase domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 626 Score = 276 bits (706), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 196/635 (30%), Positives = 311/635 (48%), Gaps = 44/635 (6%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLL + P + D +E R + G + S ++ Y + G G Sbjct: 3 DLLLFLPRRYEDLRRPVTPAEALPGRRCLVEGSAGRPSPMMGRRGMRYPV---TGGGGTM 59 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAV 159 +F + M+ G ++ + G ++ M +P + D + PL I V Sbjct: 60 WVFVFGPRPMVPQ---PGERVLLYGPVRTSPLGPCMANPKLL-----DRSSPLLGRIVPV 111 Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217 Y L + +I+ AL R P + I +++ ++S P + + IH P Sbjct: 112 YPSSRALPSWWMRNLILSALERTSQDPPEDPIPEEIRFRRSLPDLVGSLREIHWPSSGAS 171 Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA--QKILRNIPFSPTK 275 + AR RLAY ELL Q L R+ + +G + A ++ ++PF PT+ Sbjct: 172 WR---EARRRLAYQELLLLQACFALRRRM--RPLGAAPAAPAREADVEEYASSLPFRPTR 226 Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 SQES ++ I Q + + R +LQGDVGSGKT VAL A ++ G + ++P ILA+ Sbjct: 227 SQESCMRAIAQAFN-RGRFDLLLQGDVGSGKTAVALFAAHLYLKRGRSVLFLSPTEILAR 285 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 Q ++ ++ + + VE++TG+ A + +GT AL Sbjct: 286 QTFQVARRLLPDFK--VELVTGDT---------RADASPGPGLYVGTSALLFRKALGEAS 334 Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 L IVDEQ RFGV QR LT+ +L+++ATPIPRT+ L GD+++ + E P GR Sbjct: 335 ALAIVDEQQRFGVSQRAALTRGGRM-SLLMVSATPIPRTMALALYGDLEVLTLGESPPGR 393 Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 + T+ + + V++RL L G +A+W+CP +E + + V R L E Sbjct: 394 GRVTTMSMGPRGLGRVLDRLVGELERGGRAFWVCPSLE----AGPSAAVSRHRQLCESLG 449 Query: 516 -SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 ++ ++HGRM +KE+ + F+ G+ +LL+ TTV+EVGIDV DA+++++E A+ GL+ Sbjct: 450 WANPQLVHGRMPSEEKEAAVLRFREGSSRLLVGTTVLEVGIDVPDATVMVVEGADMLGLS 509 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG C+LL + RL L+ DGF +AE DL +R G + Sbjct: 510 QLHQLRGRVGRGGSDGLCVLLSS---REPVPQRLKALEELSDGFKVAELDLAERGPGTLH 566 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669 + Q G +A LLE AR+DA ++ + Sbjct: 567 HLSQHGDMGLKVADLSRDLELLEAAREDAASLVEE 601 >gi|227875295|ref|ZP_03993437.1| possible DNA helicase RecG [Mobiluncus mulieris ATCC 35243] gi|227844200|gb|EEJ54367.1| possible DNA helicase RecG [Mobiluncus mulieris ATCC 35243] Length = 819 Score = 276 bits (706), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 214/725 (29%), Positives = 321/725 (44%), Gaps = 141/725 (19%) Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI---------IMVHPHYIFHNSQ 149 G +T+ FF + L+ K T+ KL R+ + HP Y Sbjct: 100 GRLTVRFFAKHPAALQFHASRLEKGTIGVFAGKLSGRVDGFGGSGEAFLAHPEYQVLQDY 159 Query: 150 DVNF---------PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP 200 D PL A LP+ + +I L+ + +PE I +DL + P Sbjct: 160 DPEVARELSLRPQPLYHATAGLPSWK----IEGLITTILAGVEEIPEAIPEDLRARWGLP 215 Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ--FKKEIGIPINVE 258 + AEA +H+P E A + L Y E L AL R+Q + P V Sbjct: 216 TAAEALQWLHHPPDEASHEC---ALDYLRYREALTLGAALAKARQQARLRPAWASPAEVN 272 Query: 259 GK---------------------------------------------IAQKILRNIPFSP 273 G + ++ L +PF Sbjct: 273 GNGVISADSSPGGGSAGASGGGSGVMRCHSETAATSDKVDISGGGKTLVERFLAQLPFEL 332 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T Q A ++I DM+ + M R+LQG+VGSGKT++A +A AV+ G QA MAP +L Sbjct: 333 TAGQLRAWQEISADMATEVPMNRLLQGEVGSGKTVIAALAAITAVQNGCQAAFMAPTEVL 392 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQ--------------AHRRKALER-IAHGQAHI 378 A QH+E +KK N + G P+ A + AL+ + G+ I Sbjct: 393 AHQHFETLKKLLGNLGCSPSGLDGTKPEGDVVGLRLLVGSTPAKEKSALQTALQTGEPLI 452 Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVL 437 ++GTHAL S+++ KL L +VDEQHRFGV+QR+ L APH L MTATPIPRT+ + Sbjct: 453 VVGTHALLSKSVKFSKLGLAVVDEQHRFGVEQRVALLAAGQRAPHFLAMTATPIPRTVAM 512 Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQ--- 491 T GD+D+S + E P GR +KT ++ + + V + E G + Y +C Q Sbjct: 513 TVFGDLDVSVLAEIPRGRGEVKTFLVSEDNVAWVARAWRRAAEEILDGGRVYVLCAQKAP 572 Query: 492 -------IEEKKES---------------------------------NFRSVVERFNSLH 511 EK ++ N R +L Sbjct: 573 HEPVPGDTAEKPDTAPLAKPTTTVPLEEEFGGASGNVPTLAPGRVLHNVEDTFRRLQALP 632 Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 ++I +H + K+ + F +G LL++TTVIEVG+DV +AS++II +A+ F Sbjct: 633 FFADTTITWVHSGLDSGAKQRAIADFVSGVAPLLVSTTVIEVGMDVPEASMMIILDADRF 692 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLS---KNSYTRLSVLKNTEDGFLIAEEDLKQR 628 GL+QLHQLRGR+GRG C+ + PLS + RL +T DGF +AE DL+ R Sbjct: 693 GLSQLHQLRGRIGRGVRPGVCLAIA--PLSLADTPARERLEAFASTRDGFALAEADLRIR 750 Query: 629 KEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687 EG++LG Q+G L + D+ ++E A++ A+ I+ +D L + + R++ L Sbjct: 751 HEGDVLGDTQAGRNSRLQVLSLVQDAKIIEAAKQAAEEIVAEDAQLAN-HPELARLVFGL 809 Query: 688 YQYNE 692 Q E Sbjct: 810 GQGGE 814 >gi|269978182|ref|ZP_06185132.1| ATP-dependent DNA helicase RecG [Mobiluncus mulieris 28-1] gi|269933691|gb|EEZ90275.1| ATP-dependent DNA helicase RecG [Mobiluncus mulieris 28-1] Length = 836 Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 214/725 (29%), Positives = 321/725 (44%), Gaps = 141/725 (19%) Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI---------IMVHPHYIFHNSQ 149 G +T+ FF + L+ K T+ KL R+ + HP Y Sbjct: 117 GRLTVRFFAKHPAALQFHASRLEKGTIGVFAGKLSGRVDGFGGSGEAFLAHPEYQVLQDY 176 Query: 150 DVNF---------PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP 200 D PL A LP+ + +I L+ + +PE I +DL + P Sbjct: 177 DPEVARELSLRPQPLYHATAGLPSWK----IEGLITTILAGVEEIPEAIPEDLRARWGLP 232 Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ--FKKEIGIPINVE 258 + AEA +H+P E A + L Y E L AL R+Q + P V Sbjct: 233 TAAEALQWLHHPPDEASHEC---ALDYLRYREALTLGAALAKARQQARLRPAWASPAEVN 289 Query: 259 GK---------------------------------------------IAQKILRNIPFSP 273 G + ++ L +PF Sbjct: 290 GNGVISADSSPGGGSAGASGGGSGVMRCHSETAATSDKVDISGGGKTLVERFLAQLPFEL 349 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T Q A ++I DM+ + M R+LQG+VGSGKT++A +A AV+ G QA MAP +L Sbjct: 350 TAGQLRAWQEISADMATEVPMNRLLQGEVGSGKTVIAALAAITAVQNGCQAAFMAPTEVL 409 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQ--------------AHRRKALER-IAHGQAHI 378 A QH+E +KK N + G P+ A + AL+ + G+ I Sbjct: 410 AHQHFETLKKLLGNLGCSPSGLDGTKPEGDVVGLRLLVGSTPAKEKSALQTALQTGEPLI 469 Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVL 437 ++GTHAL S+++ KL L +VDEQHRFGV+QR+ L APH L MTATPIPRT+ + Sbjct: 470 VVGTHALLSKSVKFSKLGLAVVDEQHRFGVEQRVALLAAGQRAPHFLAMTATPIPRTVAM 529 Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQ--- 491 T GD+D+S + E P GR +KT ++ + + V + E G + Y +C Q Sbjct: 530 TVFGDLDVSVLAEIPRGRGEVKTFLVSEDNVAWVARAWRRAAEEILDGGRVYVLCAQKAP 589 Query: 492 -------IEEKKES---------------------------------NFRSVVERFNSLH 511 EK ++ N R +L Sbjct: 590 HEPVPGDTAEKPDTAPLAKPTTTVPLEEEFGGASGNVPTLAPGRVLHNVEDTFRRLQALP 649 Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 ++I +H + K+ + F +G LL++TTVIEVG+DV +AS++II +A+ F Sbjct: 650 FFADTTITWVHSGLDSGAKQRAIADFVSGVAPLLVSTTVIEVGMDVPEASMMIILDADRF 709 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLS---KNSYTRLSVLKNTEDGFLIAEEDLKQR 628 GL+QLHQLRGR+GRG C+ + PLS + RL +T DGF +AE DL+ R Sbjct: 710 GLSQLHQLRGRIGRGVRPGVCLAIA--PLSLADTPARERLEAFASTRDGFALAEADLRIR 767 Query: 629 KEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687 EG++LG Q+G L + D+ ++E A++ A+ I+ +D L + + R++ L Sbjct: 768 HEGDVLGDTQAGRNSRLQVLSLVQDAKIIEAAKQAAEEIVAEDAQLAN-HPELARLVFGL 826 Query: 688 YQYNE 692 Q E Sbjct: 827 GQGGE 831 >gi|307701074|ref|ZP_07638099.1| putative ATP-dependent DNA helicase RecG [Mobiluncus mulieris FB024-16] gi|307614069|gb|EFN93313.1| putative ATP-dependent DNA helicase RecG [Mobiluncus mulieris FB024-16] Length = 836 Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 210/708 (29%), Positives = 314/708 (44%), Gaps = 140/708 (19%) Query: 99 GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI---------IMVHPHYIFHNSQ 149 G +T+ FF + L+ K T+ KL R+ + HP Y Sbjct: 117 GRLTVRFFAKHPAALQFHASRLEKGTIGVFAGKLSGRVDGFGGSGEAFLAHPEYQVLQDY 176 Query: 150 DVNF---------PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP 200 D PL A LP+ + +I L+ + +PE I +DL + P Sbjct: 177 DPEVARELSLRPQPLYHATAGLPSWK----IEGLITTILAGVEEIPEAIPEDLRARWGLP 232 Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ--FKKEIGIPINVE 258 + AEA +H+P E A + L Y E L AL R+Q + P V Sbjct: 233 TAAEALQWLHHPPDEASHEC---ALDYLRYREALTLGAALAKARQQARLRPAWASPAEVN 289 Query: 259 GK---------------------------------------------IAQKILRNIPFSP 273 G + ++ L +PF Sbjct: 290 GNGVISADSSPGGGSAGASGGGSGVMRCHSETAATSDKVDISGGGKTLVERFLAQLPFEL 349 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T Q A ++I DM+ + M R+LQG+VGSGKT++A +A AV+ G QA MAP +L Sbjct: 350 TAGQLRAWQEISADMATEVPMNRLLQGEVGSGKTVIAALAAITAVQNGCQAAFMAPTEVL 409 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQ--------------AHRRKALER-IAHGQAHI 378 A QH+E +KK N + G P+ A + AL+ + G+ I Sbjct: 410 AHQHFETLKKLLGNLGCSPSGLDGTKPEGDVVGLRLLVGSTPAKEKSALQTALQTGEPLI 469 Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVL 437 ++GTHAL S+++ KL L +VDEQHRFGV+QR+ L APH L MTATPIPRT+ + Sbjct: 470 VVGTHALLSKSVKFSKLGLAVVDEQHRFGVEQRVALLAAGQRAPHFLAMTATPIPRTVAM 529 Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQ--- 491 T GD+D+S + E P GR +KT ++ + + V + E G + Y +C Q Sbjct: 530 TVFGDLDVSVLAEIPRGRGEVKTFLVSEDNVAWVARAWRRAAEEILDGGRVYVLCAQKAP 589 Query: 492 -------IEEKKES---------------------------------NFRSVVERFNSLH 511 EK ++ N R +L Sbjct: 590 HEPVPGDTAEKPDTAPLAKPTTTVSLEEEFGGASGNVPTLAPGRVLHNVEDTFRRLQALP 649 Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 ++I +H + K+ + F +G LL++TTVIEVG+DV +AS++II +A+ F Sbjct: 650 FFADTTITWVHSGLDSGAKQRAIADFVSGVAPLLVSTTVIEVGMDVPEASMMIILDADRF 709 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLS---KNSYTRLSVLKNTEDGFLIAEEDLKQR 628 GL+QLHQLRGR+GRG C+ + PLS + RL +T DGF +AE DL+ R Sbjct: 710 GLSQLHQLRGRIGRGVRPGVCLAIA--PLSLADTPARERLEAFASTRDGFALAEADLRIR 767 Query: 629 KEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTS 675 EG++LG Q+G L + D+ ++E A++ A+ I+ +D L + Sbjct: 768 HEGDVLGDTQAGRNSRLQVLSLVQDAKIIEAAKQAAEEIVAEDAQLAN 815 >gi|227499432|ref|ZP_03929543.1| RecG family helicase [Anaerococcus tetradius ATCC 35098] gi|227218494|gb|EEI83737.1| RecG family helicase [Anaerococcus tetradius ATCC 35098] Length = 663 Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 210/659 (31%), Positives = 334/659 (50%), Gaps = 35/659 (5%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L++ +G+G K + L ++ G + DL Y+P + DR I +I + Sbjct: 3 LTSLKGIGPKKASDLKRLGILGVS------DLYSYYPKEYEDRTRLRSIIDIKDSNKHYF 56 Query: 73 TGYISQHSSFQLQKRRPYKIL----LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 I F+ + L L + + +I L++F + K FEG++ + Sbjct: 57 CWQIVSKLYFKNLSKMTISYLYARELTNPSYKIRLIWFNDRFSPRK--LFEGKEYKFFCQ 114 Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188 I + K V+P IF + + I +YSL GLS + EAL + Sbjct: 115 ITEKKGIYEAVNP--IFCDLDEDEIGSIIPLYSLTKGLSHKQISTYVEEALKYYDSKEDI 172 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ-- 246 I+ LL K + IH P ++ A+ ++ +LL L ++++ Sbjct: 173 IDYSLLDKFKLNKRIDNLREIHRPSSIENLR---KAKSQIKIIDLLKDLYFLDYLKEKTR 229 Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 K+ I + N+ +IL+ IPF+ T+SQE ++ +IL+D++ N R+L GDVGSGK Sbjct: 230 HKQSINLYYNL-----SEILKEIPFTLTRSQEKSLIEILEDVASPNSANRLLVGDVGSGK 284 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366 T+VA+I M Q+ +M P +LA Q +E K +I ++T + + K Sbjct: 285 TIVAIITMIVFALNSYQSAMMVPTELLAIQQFEKNKYLFDKFKIKAALLTSSTKNKQKLK 344 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426 E I G+ ++IGTHAL Q+ + + L V+ DEQHRFGV QR L K + L M Sbjct: 345 --EDIRDGKIDLLIGTHALIQEDVVFKNLRFVVNDEQHRFGVSQRQMLALKGHEVNYLTM 402 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486 TATPIPRT+ L ID+S I E P GR PI T II +I + ++ + ++ Y Sbjct: 403 TATPIPRTMSLKISQIIDLSIINELPKGRIPITTKIIGSEKISLLYNFIEENIRASRQVY 462 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 + I+ +++ ++ + + + IAI+HG+++ DKE ++ F G+ +L+ Sbjct: 463 VVTNNIDADDKNSLENLYKLYKKKFPSY--RIAILHGKLTANDKEDILKEFSEGSIDILL 520 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 ATTVIEVGIDV +A+ +II NA++FGL+ LHQLRGRVGRGE S C L+ P + + Sbjct: 521 ATTVIEVGIDVANANTMIIYNADNFGLSTLHQLRGRVGRGEYKSYCFLVSDKP---SPTS 577 Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP----KFLIAQPELHDSLLEIARK 661 +L++L + DGF IA++D + R G+IL + Q G ++L E D EI +K Sbjct: 578 KLNILVKSNDGFEIAKKDFELRGGGKILSLIQHGKNLSKIEYLNMTAEEIDKSFEIYKK 636 >gi|325830867|ref|ZP_08164251.1| putative ATP-dependent DNA helicase RecG [Eggerthella sp. HGA1] gi|325487274|gb|EGC89717.1| putative ATP-dependent DNA helicase RecG [Eggerthella sp. HGA1] Length = 734 Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 215/680 (31%), Positives = 349/680 (51%), Gaps = 62/680 (9%) Query: 43 DLLFYHPSSFIDRHYRPKISE--ISEERIVTITGYISQHSSFQLQKRRPYKIL----LND 96 DL + P +ID + ++ I E+ T+ G + + +L+K +P L L D Sbjct: 43 DLATHFPRRYIDLSRKATVAAGVIGEQ--CTVEGAVHE---IKLKKPKPRLTLVELSLVD 97 Query: 97 GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI 156 GTG + ++ +R+ ++ V G +I V GK++ M +P+ + + +I Sbjct: 98 GTG-VLMVTCFRQPWLMDQVK-PGMRIAVAGKLEFNYGFKRMTNPYLEVLDGEGAAEGMI 155 Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216 V+ +S ++++ AL + L + + +L K S A + IH P Sbjct: 156 IPVHPACEKISAAWMRRLVGNALEAVRGLHDPLPLELRAKYRLMSRGAALSCIHFPHA-- 213 Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI-PI--NVEGKIAQKILRNIPFSP 273 + + AR RL Y+ELL + L+LMR+ ++ G P+ V+G + +PF Sbjct: 214 -MDEVAEARRRLVYEELL--LLELMLMRESRERTDGCEPVVHAVDGPRMTALAEAVPFRL 270 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T QE A +DIL ++ +L GDVG+GKT+VA A+AAA + G QA++MAP +L Sbjct: 271 TDEQEEAKRDILAALAAPQTANHLLLGDVGTGKTVVAAFALAAAADTGAQALLMAPTEVL 330 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QH + + I ++TG+ P A R L R+A G +++GTHAL +D + Sbjct: 331 ARQHGKSLGPLFDAAGISWAVLTGSTPSAEREAVLARVAEGSVDVLVGTHALLEDDVAPR 390 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 +L LV++DEQ RFGV+QR KL K AP L +TATPIPR+L L G++ +S + +P Sbjct: 391 RLSLVVIDEQQRFGVEQRAKLLAKGDAPDALYLTATPIPRSLALALFGNLTLSYLKHRPH 450 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI------EEKKESNFRSVVERF 507 T + + + L+ G++ Y +CP I + K ++ S R Sbjct: 451 DAAQRTTFVHQKADRGHAYDAARAALARGEQVYVVCPLIGQDSGERDAKAADGGSGGRRR 510 Query: 508 NSLHEHFTSS----------------------------------IAIIHGRMSDIDKESV 533 + E + + + ++HGRM +K++V Sbjct: 511 EADEEAYEYAAISIETDDDLEGDDVAAAAKEASYLQGTVFADYRVELLHGRMPASEKQAV 570 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M F++ ++L+ATTVIEVG+DV +A+++I+E+A+ FGL+QLHQLRGRVGRGE+ + + Sbjct: 571 MQRFRDNETQVLVATTVIEVGVDVPNATVMIVEDADRFGLSQLHQLRGRVGRGEKAAE-V 629 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 L S + TRLS + +T+DGF +A DL R+EG+ILG +Q G + Sbjct: 630 HLVSASKSDAALTRLSAMVDTDDGFELASYDLSLRREGDILGNRQHGASGLKLVNVMRDG 689 Query: 654 SLLEIARKDAKHILTQDPDL 673 +++E A DA IL +DP+L Sbjct: 690 AVIEAAHADAAAILEEDPNL 709 >gi|306992403|gb|ADN19318.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 430 Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 166/431 (38%), Positives = 258/431 (59%), Gaps = 12/431 (2%) Query: 144 IFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFP 200 + S+D +N I +Y L GL+ + KKI+ AL + + E+ +++ L +K Sbjct: 6 VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIKKIMFNALKDYVQEIEEFFDEEFLFEKGLM 65 Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEG 259 I A I+ P+ E A+ R Y EL Q+AL LM++ K + GI VE Sbjct: 66 DIKNALININFPQNEAYLEQ---AKYRFKYQELFLLQMALFLMKRSVKGKKGIKFERVEL 122 Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319 K L +PF T +Q +K+I+ DM+ M R++QGDVGSGKT+VA +M A++ Sbjct: 123 K---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLVQGDVGSGKTVVAACSMYIAIK 179 Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379 G Q +MAP ILA+QHY +K+ +NT I + +++G++ +++++ LE+I +G I+ Sbjct: 180 NGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISPSNKKEVLEKIKNGDYDIV 239 Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439 +GTHAL +D + + L L I DEQHRFGV+QR LT+K P VL+MTATPIPRTL L Sbjct: 240 VGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGENPDVLVMTATPIPRTLALIL 299 Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499 GD+DIS I + P GRK +KT +I + + E + +G++ Y +CP IEE + N Sbjct: 300 YGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKKGRQVYVVCPLIEESDKIN 359 Query: 500 FRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557 S + +++ + + ++HG+M+D DKE VM+ F N +L++TTVIEVG++V Sbjct: 360 AMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFVNREIDILVSTTVIEVGVNV 419 Query: 558 VDASIIIIENA 568 +A+++I+ENA Sbjct: 420 PNATVMIVENA 430 >gi|306992375|gb|ADN19304.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 446 Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 169/450 (37%), Positives = 269/450 (59%), Gaps = 14/450 (3%) Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SR 181 + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ AL Sbjct: 5 INGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALKDY 62 Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 + + E+ +++ L +K I A I+ P+ E A+ R Y EL Q+AL Sbjct: 63 VQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLLQMALF 119 Query: 242 LMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M R++QG Sbjct: 120 LVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLVQG 176 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360 DVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + +++G++ Sbjct: 177 DVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSIS 236 Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420 +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT+K Sbjct: 237 PSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGEN 296 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480 P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E + Sbjct: 297 PDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVK 356 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFK 538 +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE VM+ F Sbjct: 357 KGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFV 416 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENA 568 N +L++TTVIEVG++V +A+++I+ENA Sbjct: 417 NREIDILVSTTVIEVGVNVPNATVMIVENA 446 >gi|306992431|gb|ADN19332.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992433|gb|ADN19333.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992435|gb|ADN19334.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] gi|306992437|gb|ADN19335.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 441 Score = 273 bits (699), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 168/449 (37%), Positives = 266/449 (59%), Gaps = 14/449 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASI 562 M+ F NG +L++TTVIEVG++V +A++ Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATV 441 >gi|325479296|gb|EGC82392.1| putative ATP-dependent DNA helicase RecG [Anaerococcus prevotii ACS-065-V-Col13] Length = 660 Score = 273 bits (698), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 212/646 (32%), Positives = 323/646 (50%), Gaps = 58/646 (8%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER---- 68 ++T +G+G K S L K+ DL Y+P S+ DR K++ +++ R Sbjct: 3 VTTLKGIGPKKSKDLKKL------GIVEVSDLYNYYPKSYEDRSKLKKLANVTDNRKCYF 56 Query: 69 ---IVT--ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123 IV+ T YI+ S + R + T +I L++F N F RK+ Sbjct: 57 EWKIVSRLFTKYINGKSVSYIYAR--------EDTNKIRLIWF--------NDRFSPRKL 100 Query: 124 TVTGKIKKLKNRIIMVHPHY-----IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178 V GKI K I Y IF + +D I ++YSL GLS I E+ Sbjct: 101 -VKGKIYKFYTSIRKKSETYEAINPIFCDLEDDEIGSIVSMYSLTKGLSNKQLSGFIAES 159 Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238 L + ++ LL++ S + +H+P + S A+ ++ +LL Sbjct: 160 LKYYDGKEDILDDYLLEEFSLNDRLDNLKEVHSPTS---IDSLSNAKSQIKIIDLLKDLY 216 Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 +++ K + + + IL + F T+SQ S++K+IL+D R+L Sbjct: 217 ICEFLKQMTKSSQDLKLEYD---LNDILSYLSFDLTRSQVSSLKEILKDCESNYTSNRLL 273 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 GDVGSGKT+VALI M G Q+ +M P +LA Q YE I EI+T + Sbjct: 274 VGDVGSGKTIVALIVMLIFAMNGYQSAMMVPTELLAIQQYEKSIDLFNKLGISAEILTSS 333 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + K +++A G I++GTHAL Q+ + + L V+ DEQHRFGV QR L K Sbjct: 334 SKDKNMIK--DKLAKGDIDILMGTHALIQEDVIFKNLKFVVNDEQHRFGVSQRQLLALKG 391 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 + L MTATPIPRTL L ID+S I E P GRK I T ++ ++ D + E + Sbjct: 392 ERVNYLTMTATPIPRTLSLRISDIIDLSIIDELPKGRKSIDTYLLGSDKEDLLYETIANN 451 Query: 479 LSEGKKAYWICPQIEEKK----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534 + +G++ Y + I+ E+ ++ +RF S + ++HG++ KES++ Sbjct: 452 IDDGRQVYVVTNNIDSDDRYSLENLYKVYKKRFKSYR------VEMLHGKLKPDIKESIL 505 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F++G +L+ATTVIEVGIDV +A+ ++I N+ +FGL+ LHQLRGRVGRGE S C L Sbjct: 506 KKFQDGEIDILLATTVIEVGIDVSNANTMVIYNSNNFGLSTLHQLRGRVGRGEYKSFCYL 565 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 + P N +L++L + DGF IA++D R G+IL Q G Sbjct: 566 ITDNPSPSN---KLNILVKSNDGFEIAKKDYDLRGGGKILSYLQHG 608 >gi|306992319|gb|ADN19276.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 442 Score = 273 bits (698), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 167/449 (37%), Positives = 266/449 (59%), Gaps = 14/449 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 2 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 60 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 117 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 173 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKV 413 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASI 562 M+ F NG +L++TTVIEVG++V +A++ Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATV 442 >gi|51849608|dbj|BAD42331.1| DNA helicase RecG [Nannochloris bacillaris] Length = 1341 Score = 273 bits (698), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 187/545 (34%), Positives = 280/545 (51%), Gaps = 83/545 (15%) Query: 196 KKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI 255 K F EA +H P + +E R RLA+ ELL Q+ LLL R + +P Sbjct: 772 KYGFMGYLEALRGMHRPTGPEHYE---ACRRRLAFQELLVLQLKLLLQRATLR----LPS 824 Query: 256 NVEG-------KIAQKIL--RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 N G AQ L R +PF T +Q+ A+ + M+ M+ +LQGDVG GK Sbjct: 825 NKNGIQGVAVTNFAQMDLVRRALPFELTGAQDRALSAVTDGMTGWPPMMALLQGDVGCGK 884 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII--------------- 351 T VA +++ AA +G QA +MAP ILA+QH+ +K+ + + + Sbjct: 885 TAVAFLSVLAATGSGYQAAVMAPTEILAEQHFSVLKRLIEEAKAVAEADPDDRDAAAAAA 944 Query: 352 ----VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407 V ++TG+ +A R + + G +I+GTHAL D++ + L L I+DEQH+FG Sbjct: 945 SLPEVVLLTGSTKRAERNRIQAGLEDGSIGVIVGTHALISDNVAFSNLGLAIIDEQHKFG 1004 Query: 408 VQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII--- 463 V QR L KA+ +PH+L M+ATPIPR+L L + G++ + I E P GR P+ T ++ Sbjct: 1005 VGQRAALLAKASPSPHILSMSATPIPRSLALVAHGELSLVTIDELPPGRIPVATQVVIDH 1064 Query: 464 -PINRIDEVIERLKVVLSEGKKAYWICP----------------------------QIEE 494 P R +V E ++ ++ G + Y +CP Q ++ Sbjct: 1065 DPTERA-QVYEAMRREVAAGGQVYIVCPLVDGKNAAGNSISGSSSMSSVDEDTQEHQYQQ 1123 Query: 495 KKESNFRSVVERFNSLHEHF---------TSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545 ++E S ++HE S ++HGRMS +KE+ + +F G +L Sbjct: 1124 QREGTTGSTSGLKAAVHERDRLIAEGEIEASQCGVLHGRMSSEEKEAALAAFAAGKTPVL 1183 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605 I+TTV+EVG+DV AS+II+E+A+ FGLAQLHQLRGRVGRG+ S+C L+ + Sbjct: 1184 ISTTVVEVGVDVPAASLIIVEHADRFGLAQLHQLRGRVGRGDRASACYLITDK--AGEEA 1241 Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG---MPKFLIAQPELHDSLLEIARKD 662 RL VL+ GF +AE D R GE++G +QSG M + Q L+E AR+ Sbjct: 1242 ERLRVLERCSSGFDVAEADFAIRGAGEVIGRRQSGKEAMGGLKVCQLPQDGMLVEAAREA 1301 Query: 663 AKHIL 667 A ++ Sbjct: 1302 AAGLM 1306 >gi|306992387|gb|ADN19310.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 447 Score = 273 bits (698), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 169/455 (37%), Positives = 270/455 (59%), Gaps = 14/455 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALKDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I + I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNVDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 M+ F N +L++TTVIEVG++V +A+++I+ENA Sbjct: 413 MEEFVNREIDILVSTTVIEVGVNVPNATVMIVENA 447 >gi|306992411|gb|ADN19322.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 441 Score = 270 bits (691), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 167/449 (37%), Positives = 265/449 (59%), Gaps = 14/449 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + KKI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIKKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALKDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL LM++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M A++ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASI 562 M+ F N +L++TTVIEVG++V +A++ Sbjct: 413 MEEFVNREIDILVSTTVIEVGVNVPNATV 441 >gi|306992381|gb|ADN19307.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 444 Score = 270 bits (689), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 167/451 (37%), Positives = 267/451 (59%), Gaps = 14/451 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 2 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 60 ALKDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 117 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 173 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 M+ F N +L++TTVIEVG++V +A+++I Sbjct: 414 MEEFVNREIDILVSTTVIEVGVNVPNATVMI 444 >gi|146317997|ref|YP_001197709.1| RecG-like helicase [Streptococcus suis 05ZYH33] gi|145688803|gb|ABP89309.1| RecG-like helicase [Streptococcus suis 05ZYH33] Length = 542 Score = 270 bits (689), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 179/532 (33%), Positives = 286/532 (53%), Gaps = 24/532 (4%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 LS G+G K + KI + N N DLL Y+P + D + I ++ + + Sbjct: 8 LSVLPGIGPKSAEKFLKI-SIQNIN-----DLLTYYPFRYEDFESK-SIYDLQDGEKAVV 60 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132 G + ++ Q + ++ + GE+ L + L + G+ I V GK K Sbjct: 61 VGEVVSPANVQYYGYKRNRLRFSMKQGEVVLAVSFFNQPYLADKIVLGQDIAVWGKWDKA 120 Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLPEWIE 190 K + + I D ++ VY + G+S K I A+ + L +L E + Sbjct: 121 KASLTGMK---ILAQVSDE----LQPVYHVAQGISQVNLVKAIKTAIDQGYLHLLEENLP 173 Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 L ++ + EA +H P +++ A R+ ++EL Q+ L +++ + Sbjct: 174 SVLRERYRLMNRREAVFAMHFPTNLEEYR---QALRRMKFEELFYFQLQLQMLKANNRDI 230 Query: 251 I-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309 + G+ I + +R +PF T +Q A+ +IL DM M R+LQGDVGSGKT+V Sbjct: 231 LNGLKIAYDADRLAMQIRQLPFVLTDAQSGALAEILSDMKSYGHMNRLLQGDVGSGKTVV 290 Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369 A +AM AAV AG QA IM P ILA+QH+E +++ ++ + ++TG M A RR ALE Sbjct: 291 AGLAMFAAVTAGMQAAIMVPTEILAEQHFESLRQLF--PELSIALLTGGMKAAERRTALE 348 Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429 I+ GQ II+GTHAL Q+S+ Y+KL LV+ DEQHRFGV+QR +K P VL+MTAT Sbjct: 349 AISSGQVDIIVGTHALIQESVTYHKLGLVVTDEQHRFGVKQRRLFREKGDNPDVLMMTAT 408 Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489 PIPRTL +T+ GD+D+S I + PAGRKPI T + ++ V++ L+ L G + Y+I Sbjct: 409 PIPRTLAITAFGDMDVSIINQLPAGRKPIITRWVKHQQLPTVLDWLERELEVGAQVYFIS 468 Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKN 539 P IEE + + ++ V+ + L HF + + +HG+M + +K+++M + ++ Sbjct: 469 PLIEESEALDLKNAVDLQSDLQAHFGEQVTVDLLHGKMKNDEKDAIMQALRS 520 >gi|306992477|gb|ADN19355.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 422 Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 162/425 (38%), Positives = 253/425 (59%), Gaps = 12/425 (2%) Query: 144 IFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFP 200 + S+D +N I +Y L GL+ + +KI+ AL + + E+ +++ L +K Sbjct: 4 VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYVQEVEEFFDEEFLFEKGLM 63 Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEG 259 I A I+ P+ E A+ R Y EL Q+AL LM++ K + GI VE Sbjct: 64 DIKNALININFPQNEAYLEQ---AKYRFKYQELFLLQMALFLMKRSVKGKKGIKFERVEL 120 Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319 K L +PF T +Q +K+I+ DM+ M R++QGDVGSGKT+VA +M A++ Sbjct: 121 K---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLVQGDVGSGKTVVAACSMYIAIK 177 Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379 G Q +MAP ILA+QHY +K+ +NT I + +++G++ +++++ LE+I +G I+ Sbjct: 178 NGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISPSNKKEVLEKIKNGDYDIV 237 Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439 +GTHAL +D + + L L I DEQHRFGV+QR LT+K P VL+MTATPIPRTL L Sbjct: 238 VGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGENPDVLVMTATPIPRTLALIL 297 Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499 GD+DIS I + P GRK +KT +I + + E + +G++ Y +CP IEE + N Sbjct: 298 YGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKKGRQVYVVCPLIEESDKIN 357 Query: 500 FRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557 S + +++ + + ++HG+M+D DKE VM+ F NG +L++TTVIEVG++V Sbjct: 358 AMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFVNGKIDILVSTTVIEVGVNV 417 Query: 558 VDASI 562 +A++ Sbjct: 418 PNATV 422 >gi|29829213|ref|NP_823847.1| ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680] gi|29606319|dbj|BAC70382.1| putative ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680] Length = 1075 Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 146/371 (39%), Positives = 230/371 (61%), Gaps = 38/371 (10%) Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT-------------QNTQIIVE 353 T+VAL AM A V++GGQA ++AP +LAQQH+ I + +T+++ Sbjct: 649 TMVALRAMLAVVDSGGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGAEHSTKVV-- 706 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++TG+M A RR+AL + G+A I+IGTHAL +D +Q++ L LV+VDEQHRFGV+QR Sbjct: 707 LLTGSMGAAARRQALLDLVTGEAGIVIGTHALIEDKVQFHDLGLVVVDEQHRFGVEQRDA 766 Query: 414 LTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----I 468 L K PH+L+MTATPIPRT+ +T GD++ S + + PAGR PI + ++P + Sbjct: 767 LRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAADKPHFL 826 Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS----------------VVERFNSLHE 512 ER++ + +G +AY +C +I ++++ ++ V+E + L + Sbjct: 827 ARAWERVREEVGKGHQAYVVCARIGDEEDDPKKAKKKSPEDEAEKRPPLAVLEVADQLAK 886 Query: 513 HFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 + + +HGRM DK++VM F G +L+ATTVIEVG++V +A+ ++I +A+ Sbjct: 887 GPLQGLGVEVLHGRMPPDDKDAVMRRFAAGERDVLVATTVIEVGVNVPNATAMVIMDADR 946 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630 FG++QLHQLRGRVGRG C+L+ P + + RL+ + +T DGF ++ DL+QR+E Sbjct: 947 FGVSQLHQLRGRVGRGSAAGLCLLVTEMPEASPARQRLNAVASTLDGFELSRIDLEQRRE 1006 Query: 631 GEILGIKQSGM 641 G++LG QSG+ Sbjct: 1007 GDVLGQAQSGV 1017 Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 70/291 (24%), Positives = 116/291 (39%), Gaps = 39/291 (13%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ---HSSFQLQKRRP----YKILLN 95 DLL ++P + +R ++++ + VT+ ++ H+ + R ++ + Sbjct: 34 DLLHHYPRRYEERGQLTHLADLPMDEHVTVVAQVADARLHTFASAKAPRGKGQRLEVTIT 93 Query: 96 DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN--- 152 DG+G + L+FF G + +GK+ R+ + HP Y D Sbjct: 94 DGSGRLQLVFFGNGVHKPHKDLLPGTRAMFSGKVSVFNRRLQLAHPAYELLRGADDEAAE 153 Query: 153 ------------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP 200 +P + S SV + EAL LP L + Sbjct: 154 SVDSWAGALIPIYPATAKLESWKIAKSVQTVLPSVQEALDPLP-------DSLRDGRGLI 206 Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK 260 S+ EA IH P D E AR RL +DE Q+AL R + +P Sbjct: 207 SLPEALLKIHRPHTKADIE---DARARLKWDEAFVLQVALARRRH---ADAQLPAAARKP 260 Query: 261 IAQKILR----NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 +L +PF+ T+ Q+ K+I D++ ++ M R+LQG+VGSGK Sbjct: 261 KPDGLLTAFDAKLPFTLTEGQQKVSKEIFDDLATEHPMHRLLQGEVGSGKA 311 >gi|322516063|ref|ZP_08069000.1| DNA helicase RecG [Streptococcus vestibularis ATCC 49124] gi|322125478|gb|EFX96824.1| DNA helicase RecG [Streptococcus vestibularis ATCC 49124] Length = 316 Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 132/297 (44%), Positives = 205/297 (69%), Gaps = 4/297 (1%) Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437 +I+GTH+L QD++ Y++L LVI DEQHRFGV QR +K P VL+MTATPIPRTL + Sbjct: 1 MIVGTHSLIQDTVTYHRLGLVITDEQHRFGVNQRRIFREKGDNPDVLMMTATPIPRTLAI 60 Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497 T+ G++D+S I + PAGRKPI T + ++D V+ +K L + + Y+I P IEE + Sbjct: 61 TAFGEMDVSIIDQMPAGRKPIITRWVKHEQLDTVLTWIKSKLEKDAQVYFISPLIEESEA 120 Query: 498 SNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555 + ++ V L + F ++++A++HGRM + +K+ +M FK+ ++L++TTVIEVG+ Sbjct: 121 LDLKNAVALHQELTDFFGDSATVALMHGRMKNDEKDQIMQDFKDKKSQILVSTTVIEVGV 180 Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615 +V +A++++I +A+ FGL+QLHQLRGRVGRG++ S C+L+ +P + R+ + T Sbjct: 181 NVPNATVMVIMDADRFGLSQLHQLRGRVGRGDKQSYCVLVANPK-NDTGKKRMQAMCETT 239 Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 DGF++AEEDLK R GEI G +QSG+P+F +A ++LE AR+ A I++ DP+ Sbjct: 240 DGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEARRVASQIVS-DPN 295 >gi|313893259|ref|ZP_07826834.1| helicase C-terminal domain protein [Veillonella sp. oral taxon 158 str. F0412] gi|313442155|gb|EFR60572.1| helicase C-terminal domain protein [Veillonella sp. oral taxon 158 str. F0412] Length = 321 Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 137/296 (46%), Positives = 196/296 (66%), Gaps = 7/296 (2%) Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437 +IIGTHAL Q+ + ++ L LVI+DEQHRFGV+QR +L QK T PHVL+MTATPIPRT+ L Sbjct: 1 MIIGTHALIQEGVNFHNLGLVIIDEQHRFGVEQRARLQQKGTYPHVLIMTATPIPRTMTL 60 Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497 + GD+ +S I E P GRKP+KT + + D + ++EG++ Y +CP +EE ++ Sbjct: 61 SVYGDLAVSLIKEMPPGRKPVKTYAVDSSYKDRLRTFFGKEMAEGRQVYVVCPLVEESEK 120 Query: 498 SNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555 + ++ E + L E+F + ++HGRM +K+ VM++F NG LL++TTVIEVG+ Sbjct: 121 LDLQAAEELYLELKEYFYKDYEVGLVHGRMKPSEKDEVMNAFHNGDISLLVSTTVIEVGV 180 Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN--SYTRLSVLKN 613 +V +A+I+ IE AE FGL+QLHQLRGRVGRG S CIL+ SKN S RL +++ Sbjct: 181 NVPNATIMCIEGAERFGLSQLHQLRGRVGRGSHQSYCILVSD---SKNDVSQERLKLMEQ 237 Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669 T+DGF +AE+DL R G++ G+ QSG+P +A +L ARKD +Q Sbjct: 238 TQDGFELAEQDLLLRGSGQLFGLAQSGLPDLRVANIIKDIEILVEARKDVLAFASQ 293 >gi|298346962|ref|YP_003719649.1| putative DNA helicase RecG [Mobiluncus curtisii ATCC 43063] gi|304389327|ref|ZP_07371292.1| possible DNA helicase RecG [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298237023|gb|ADI68155.1| possible DNA helicase RecG [Mobiluncus curtisii ATCC 43063] gi|304327445|gb|EFL94678.1| possible DNA helicase RecG [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 816 Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 185/632 (29%), Positives = 295/632 (46%), Gaps = 118/632 (18%) Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF---------PLIEAVYSLPTGLSV 168 F GR ++GK L + + HP Y D PL A LP S Sbjct: 137 FAGR---LSGKPDSLASEAFLAHPEYRVLADYDPEIVKTLSTQPQPLYHATAGLP---SW 190 Query: 169 DLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARER 227 + K I + L P +PE I L ++++ P A +H+P ++ A + Sbjct: 191 KIGKIIDAQLLMVNPAEIPEAIPDSLRRERNLPDAYTALLGLHHPETDAQYQ---AALDY 247 Query: 228 LAYDELLAGQIALLLMRKQFKKE--IGIPINVE------------GKIAQKILRNIPFSP 273 L + E AL R Q + +P++ + G + + + +PF Sbjct: 248 LRFREAFTLGAALAKARNQIQSHPAWSLPVSQDVFESSTDSDGEPGDLVAQAVAGLPFQL 307 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T Q ++I D++++ M R+LQG+VGSGKT+V+ +A AAV+ G QA MAP +L Sbjct: 308 TAGQRQVWEEIAGDIAREVPMNRLLQGEVGSGKTVVSALACLAAVQNGFQAAFMAPTEVL 367 Query: 334 AQQHYEFIKKYTQN---------------TQIIVEIITGNMPQAHRRKALERIAHGQAHI 378 A QH++ + + + + + ++TG+ P +R+ +R A G+ + Sbjct: 368 AHQHFQTLNRLLGDLADPLGGLSGEQPGTDNVPLRLLTGSTPAPEKREIADRGAAGEPML 427 Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK-LTQKATAPHVLLMTATPIPRTLVL 437 ++GT AL +S+Q +L LV+VDEQHRFGV+QR LT+ APH L MTATPIPRT+ + Sbjct: 428 VVGTQALLTESLQLSRLALVVVDEQHRFGVEQRGALLTRGERAPHFLTMTATPIPRTVAM 487 Query: 438 TSLGDIDISKITEKPAGRKPIKTVII---PINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 T GD+D+S + + PAGR ++T ++ + + R + +G + Y +CP+I Sbjct: 488 TVFGDLDVSVLRQLPAGRAEVQTFLVNEANVRWVTRAWSRAAEEIKQGGRVYVLCPKIAP 547 Query: 495 KK--------------------------ESNFRSVVERFNSLHE-------HFTSSIA-- 519 ++++ + F L H + A Sbjct: 548 DATGQNPVSSSDSRHPPQGDRKTRKPAVQTSWGDDLAGFGELEALEPDRILHTVTQTAAR 607 Query: 520 -------------IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 + H + K+ + F G LL++TTV+EVG+DV +AS++II Sbjct: 608 LAALPIFRDVPIGVAHSNLDSAAKQQAVSDFAAGRTPLLVSTTVVEVGMDVPEASMMIIL 667 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCIL---LYHPPLSKN---------------SYTRL 608 +A+ +G++QLHQLRGR+GRG C+ L PP+S N + RL Sbjct: 668 DADRYGISQLHQLRGRIGRGSRPGVCLAIAPLDFPPVSGNLPEMMALAGAGTLSPALARL 727 Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 + DGF +AE DL R+EG++LG QSG Sbjct: 728 CAFAASRDGFALAEADLTIRREGDVLGQNQSG 759 >gi|119025222|ref|YP_909067.1| ATP-dependent DNA helicase [Bifidobacterium adolescentis ATCC 15703] gi|118764806|dbj|BAF38985.1| ATP-dependent DNA helicase [Bifidobacterium adolescentis ATCC 15703] Length = 893 Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 192/596 (32%), Positives = 280/596 (46%), Gaps = 109/596 (18%) Query: 203 AEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA 262 AEAF IH+P+ F + A L Y+E L Q AL+ R +K + ++ Sbjct: 299 AEAFRAIHDPQNRDGF---NKALRTLRYEEALICQTALVQSRDSSRKATATAC-ADTRLK 354 Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD----------------VGSGK 306 + ++PFS T Q+ I DI DM++ M R+LQG+ VGSGK Sbjct: 355 DDFVESLPFSLTDGQQQVIADISDDMARDYPMQRLLQGEVGSGKTVVAVAAMMQAVGSGK 414 Query: 307 TLVALIAMAAAVEAG-----GQAVIMAPIGILAQQHYEFIKKYTQNTQ------------ 349 V + E G M G A ++ + + T++T Sbjct: 415 QAVLVAPTQVLAEQHYSSIRGMVDRMCGTGEEADENAKSGESQTKSTHRAVVDESGQVTS 474 Query: 350 ------------------------------IIVEIITGNMPQAHRRKALERIAHGQAHII 379 I V ++TG M A RR+ L + A G+ I+ Sbjct: 475 GNAPEPQNGGQSDGGQVEKLLDGQSNSLPDIPVLLLTGGMKLAARRRVLAQAASGKPCIV 534 Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVLLMTATPIPRTLVLT 438 + THA F + Q L L ++DEQHRFGV+QR L K +TAPH+L+MTATPIPRT +T Sbjct: 535 VATHAAFSKTFQAPNLALAVIDEQHRFGVEQRESLNAKGSTAPHLLVMTATPIPRTAAMT 594 Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQI--- 492 GD+DIS +TE P GRKPI+T ++P + E+ ++ + G++AY +CP+I Sbjct: 595 WFGDLDISWLTELPGGRKPIRTFVVPEANGPLMAEMFGLIRKRIDAGERAYVVCPRIDAD 654 Query: 493 ----------------------------EEKKES-----NFRSVVERFNSLHEHFTSSIA 519 +E++E + + ER SL + IA Sbjct: 655 AKDADDAGGSGDAEVGSAFDATYDLGEDDEQREQRPPLHSVAEIAERLRSLPQFAGIRIA 714 Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579 + GR D K +M F+ G +L+ATTVIEVG+DV AS ++I +A+ +GL+QLHQL Sbjct: 715 TLTGRDDDETKSQIMADFEAGVTPILVATTVIEVGVDVAQASCMVIFDADRYGLSQLHQL 774 Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639 RGRVGRG S L+ P ++ RL V+ T DG IA+ DL+ R G++LG QS Sbjct: 775 RGRVGRGGTESGAFLISRAPEGSDAAKRLDVIAGTLDGAEIAQADLEFRGAGDVLGDAQS 834 Query: 640 GMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694 G L + D ++E AR +A ++ +DP L Q +L + NE F Sbjct: 835 GGKSGLKLLRVVKDVKIIEEARAEAAKLVAEDPTLQGYV-QLAGAVLDFTRGNETF 889 >gi|210635938|ref|ZP_03298631.1| hypothetical protein COLSTE_02570 [Collinsella stercoris DSM 13279] gi|210158299|gb|EEA89270.1| hypothetical protein COLSTE_02570 [Collinsella stercoris DSM 13279] Length = 421 Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 157/422 (37%), Positives = 233/422 (55%), Gaps = 27/422 (6%) Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKT VA A+AA ++G QA +MAP G+LAQQ+ + + ++TG P A R Sbjct: 1 GKTAVACFALAAVADSGMQACVMAPTGVLAQQYAVKSGPLLEAAGVSWALLTGATPHAER 60 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424 LER+A G+ ++ GTHA+ D + + L LV++DEQHRFGV QR L K +L Sbjct: 61 AMLLERLASGEISVLFGTHAVLGDDVAFEHLSLVVIDEQHRFGVGQRNALRSKGPGADLL 120 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 +MTATPIPRTL L+ GD+D S I +P + T ++ D ++ L++G++ Sbjct: 121 VMTATPIPRTLALSVYGDLDTSVIRHRPIAGAGVTTRVLEGPNRDIAYGAVREALAQGRQ 180 Query: 485 AYWICPQI--EEKKES-----------NFRS--------VVERFNSLHEHFT-SSIAIIH 522 AY ICP + +E ES N R+ V L F+ + + ++H Sbjct: 181 AYVICPMVSPQEGAESLEDVPGLDVDENGRAHQAVTLHDVQTEVEELRRVFSPARVEMLH 240 Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582 G+MS K+ V+D F+ G +L+ATTV+EVG+DV +A++++IEN E FGLA LHQLRGR Sbjct: 241 GKMSARAKDEVIDEFRAGRIDVLVATTVVEVGVDVPNATVMLIENGERFGLATLHQLRGR 300 Query: 583 VGRGEEISSCILLYHPPLSKNSYT----RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638 VGRG +C ++ + T RL L T+DGF +AE DL+ R EGEILG++Q Sbjct: 301 VGRGSLPGTCFVITEVRSRRGKRTPALERLEALAKTDDGFELAEMDLRLRHEGEILGLRQ 360 Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698 G + ++E A +DA +L DL +V +R + + +Y + F+ + Sbjct: 361 HGGVSLRFVDLDADVDVIEHAHEDADELLRYSHDLGAVATLPLRHEV-VSRYGDVFKEVS 419 Query: 699 AG 700 G Sbjct: 420 GG 421 >gi|315655508|ref|ZP_07908407.1| DNA helicase RecG [Mobiluncus curtisii ATCC 51333] gi|315490163|gb|EFU79789.1| DNA helicase RecG [Mobiluncus curtisii ATCC 51333] Length = 816 Score = 268 bits (684), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 183/632 (28%), Positives = 296/632 (46%), Gaps = 118/632 (18%) Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF---------PLIEAVYSLPTGLSV 168 F GR ++GK + + HP Y D PL A LP S Sbjct: 137 FAGR---LSGKPDSRASEAFLAHPEYRVLADYDPEVVKTLSTRPQPLYHATAGLP---SW 190 Query: 169 DLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARER 227 + K I + L P +PE I L ++++ P A +H+P ++ A + Sbjct: 191 KIGKIIDAQLLMVNPAEIPEAIPDSLRRERNLPDAYTALLGLHHPETDAQYQ---AALDY 247 Query: 228 LAYDELLAGQIALLLMRKQFKKE--IGIPINVE------------GKIAQKILRNIPFSP 273 L + E AL R Q + +P++ + G + +++ +PF Sbjct: 248 LRFREAFTLGAALAKARNQIQSHPAWSLPVSQDVFASRTDSGGEPGDLVTQVVAGLPFQL 307 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T Q +++ D++++ M R+LQG+VGSGKT+V+ +A AAV+ G QA MAP +L Sbjct: 308 TAGQRQVWEELAGDIAREVPMNRLLQGEVGSGKTVVSALACLAAVQNGFQAAFMAPTEVL 367 Query: 334 AQQHYEFIKKYTQN---------------TQIIVEIITGNMPQAHRRKALERIAHGQAHI 378 A QH++ + + + + + ++TG+ P +R+ +R A G+ + Sbjct: 368 AHQHFQTLNRLLGDLADPLEGLSGKQPSMDNVPLRLLTGSTPAPEKREIADRGAAGEPML 427 Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVL 437 ++GT AL +S+Q +L LV+VDEQHRFGV+QR L + APH L MTATPIPRT+ + Sbjct: 428 VVGTQALLTESLQLSRLALVVVDEQHRFGVEQRGALLARGERAPHFLTMTATPIPRTVAM 487 Query: 438 TSLGDIDISKITEKPAGRKPIKTVII---PINRIDEVIERLKVVLSEGKKAYWICPQI-- 492 T GD+D+S + + PAGR ++T ++ + + R + +G + Y +CP+I Sbjct: 488 TVFGDLDVSVLRQLPAGRADVQTFLVNEANVRWVTRAWSRAAEEIKQGGRVYVLCPKIAP 547 Query: 493 ------------------------EEKKESNFRSVVERFNSLHE-------HFTSS---- 517 + ++++ + F L E H + Sbjct: 548 DATGQDPVSSSDSQHPPQGDRKTRKPTAQTSWGDDLAGFGELEELEPDRILHTVTQTAAQ 607 Query: 518 -----------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 I + H + K+ + F G LL++TTV+EVG+DV +AS++II Sbjct: 608 LTALPIFRNIPIGVAHSNLDSGAKQQAVSDFAAGRTPLLVSTTVVEVGMDVPEASMMIIL 667 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCIL---LYHPPLSKN---------------SYTRL 608 +A+ +G++QLHQLRGR+GRG C+ L PP+S N + RL Sbjct: 668 DADRYGISQLHQLRGRIGRGSRPGVCLAIAPLDFPPVSDNLPELMSLAGSGTLSPALARL 727 Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 + DGF +AE DL R+EG++LG QSG Sbjct: 728 CAFAASRDGFALAEADLSIRREGDVLGQNQSG 759 >gi|315656585|ref|ZP_07909472.1| DNA helicase RecG [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492540|gb|EFU82144.1| DNA helicase RecG [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 816 Score = 268 bits (684), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 185/632 (29%), Positives = 295/632 (46%), Gaps = 118/632 (18%) Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF---------PLIEAVYSLPTGLSV 168 F GR ++GK L + + HP Y D PL A LP S Sbjct: 137 FAGR---LSGKPDSLASEAFLAHPEYRVLADYDPEIVKTLSTQPQPLYHATAGLP---SW 190 Query: 169 DLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARER 227 + K I + L P +PE I L ++++ P A +H+P ++ A + Sbjct: 191 KIGKIIDAQLLMVNPAEIPEAIPDSLRRERNLPDAYTALLGLHHPETDAQYQ---AALDY 247 Query: 228 LAYDELLAGQIALLLMRKQFKKE--IGIPINVE------------GKIAQKILRNIPFSP 273 L + E AL R Q + +P++ + G + + + +PF Sbjct: 248 LRFREAFTLGAALAKARNQIQSHPAWSLPVSQDVFESSTDSDGEPGDLVAQAVAGLPFQL 307 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T Q ++I D++++ M R+LQG+VGSGKT+V+ +A AAV+ G QA MAP +L Sbjct: 308 TAGQRQVWEEISGDIAREVPMNRLLQGEVGSGKTVVSALACLAAVQNGFQAAFMAPTEVL 367 Query: 334 AQQHYEFIKKYTQN---------------TQIIVEIITGNMPQAHRRKALERIAHGQAHI 378 A QH++ + + + + + ++TG+ P +R+ +R A G+ + Sbjct: 368 AHQHFQTLNRLLGDLADPLGGLSGEQPGTDNVPLRLLTGSTPAPEKREIADRGAAGEPML 427 Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK-LTQKATAPHVLLMTATPIPRTLVL 437 ++GT AL +S+Q +L LV+VDEQHRFGV+QR LT+ APH L MTATPIPRT+ + Sbjct: 428 VVGTQALLTESLQLSRLALVVVDEQHRFGVEQRGALLTRGERAPHFLTMTATPIPRTVAM 487 Query: 438 TSLGDIDISKITEKPAGRKPIKTVII---PINRIDEVIERLKVVLSEGKKAYWICPQIEE 494 T GD+D+S + + PAGR ++T ++ + + R + +G + Y +CP+I Sbjct: 488 TVFGDLDVSVLRQLPAGRAEVQTFLVNEANVRWVTRAWSRAAEEIKQGGRVYVLCPKIAP 547 Query: 495 KK--------------------------ESNFRSVVERFNSLHE-------HFTSSIA-- 519 ++++ + F L H + A Sbjct: 548 DATGQNPVSSSDSRHPPQGDRKTRKPAVQTSWGDDLAGFGELEALEPDRILHTVTQTAAR 607 Query: 520 -------------IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 + H + K+ + F G LL++TTV+EVG+DV +AS++II Sbjct: 608 LATLPIFRDIPIGVAHSNLDSAAKQQAVSDFAAGRTPLLVSTTVVEVGMDVPEASMMIIL 667 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCIL---LYHPPLSKN---------------SYTRL 608 +A+ +G++QLHQLRGR+GRG C+ L PP+S N + RL Sbjct: 668 DADRYGISQLHQLRGRIGRGSRPGVCLAIAPLDFPPVSGNLPEMMALSGAGTLSPALARL 727 Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 + DGF +AE DL R+EG++LG QSG Sbjct: 728 CAFAASRDGFALAEADLTIRREGDVLGQNQSG 759 >gi|256545262|ref|ZP_05472627.1| ATP-dependent DNA helicase RecG [Anaerococcus vaginalis ATCC 51170] gi|256399089|gb|EEU12701.1| ATP-dependent DNA helicase RecG [Anaerococcus vaginalis ATCC 51170] Length = 659 Score = 267 bits (683), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 164/483 (33%), Positives = 266/483 (55%), Gaps = 16/483 (3%) Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218 +Y L L+ I +AL ++K +L +F IH P Sbjct: 140 IYPLTKSLTNKNLSDFIGQALEFFDENEVLLDKKVLDDFNFSDKLSNLKEIHFPTS---L 196 Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 E A+ ++ +LL I + +M+K+ +++ + N+ IL + F T SQ Sbjct: 197 ENLKNAKSQIKIIDLLKELIFIYVMQKENSYQDLNLKYNL-----NDILNKLDFKLTPSQ 251 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 ++ +IL+D + K+ M R+L GDVGSGKT++ALI M Q +M P +LA Q Sbjct: 252 YKSLIEILKDSTSKSIMNRLLCGDVGSGKTIIALIVMIIFSINSYQTCMMVPTEVLAIQQ 311 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 YE K++ ++ + + ++T + K +I +G+ I+IGTHAL D +++ L L Sbjct: 312 YEKNKEFVESFGLKISLLTSSTKNKEDLK--NKIKNGEIDIVIGTHALIVDDVEFKNLKL 369 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 ++ DEQHRFGV+QR L +K + L MTATPIPRTL L +D+S+ITE P GR Sbjct: 370 IVADEQHRFGVRQRQALYEKGNDANYLTMTATPIPRTLFLKMKKLLDLSQITELPKGRGE 429 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517 I T ++ ++ + + ++ + G++ Y + IE ++ ++ +R+ ++ Sbjct: 430 IITELVLLSMENSLFSKIDDFIKSGRQVYVVSDSIESDDINSLENLYKRYKKRFKNI--R 487 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 I +HG++ +KE ++ F +G +LI+TTVIEVGIDV +A+ +II NA +FGL+ LH Sbjct: 488 IEKLHGKLKASEKEEILRDFSDGKIDILISTTVIEVGIDVSNANCMIIYNANNFGLSSLH 547 Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637 QLRGR+GRG S C L+ + ++L+++KN+ DGF IA++DLK R G+IL Sbjct: 548 QLRGRIGRGSYKSFCYLISEKV---DERSKLNIIKNSNDGFEIAKKDLKLRGAGKILSTI 604 Query: 638 QSG 640 Q G Sbjct: 605 QHG 607 >gi|154486604|ref|ZP_02028011.1| hypothetical protein BIFADO_00421 [Bifidobacterium adolescentis L2-32] gi|154084467|gb|EDN83512.1| hypothetical protein BIFADO_00421 [Bifidobacterium adolescentis L2-32] Length = 887 Score = 267 bits (682), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 192/596 (32%), Positives = 280/596 (46%), Gaps = 109/596 (18%) Query: 203 AEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA 262 AEAF IH+P+ F + A L Y+E L Q AL+ R +K + ++ Sbjct: 293 AEAFMAIHDPQNRDGF---NKALRTLRYEEALICQTALVQSRDSSRKATATAC-ADTRLK 348 Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD----------------VGSGK 306 + ++PFS T Q+ I DI DM++ M R+LQG+ VGSGK Sbjct: 349 DDFVESLPFSLTDGQQQVIADISDDMARDYPMQRLLQGEVGSGKTVVAVAAMMQAVGSGK 408 Query: 307 TLVALIAMAAAVEAG-----GQAVIMAPIGILAQQHYEFIKKYTQNTQ------------ 349 V + E G M G A ++ + + T++T Sbjct: 409 QAVLVAPTQVLAEQHYSSIRGMVDRMCGTGEEADENAKSGESQTKSTHHAVVDESGQVTS 468 Query: 350 ------------------------------IIVEIITGNMPQAHRRKALERIAHGQAHII 379 I V ++TG M A RR+ L + A G+ I+ Sbjct: 469 GNAPEPQNGGQSDGGQVEKLLDGQSNSLPDIPVLLLTGGMKLAARRRVLAQAASGKPCIV 528 Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVLLMTATPIPRTLVLT 438 + THA F + Q L L ++DEQHRFGV+QR L K +TAPH+L+MTATPIPRT +T Sbjct: 529 VATHAAFSKTFQAPNLALAVIDEQHRFGVEQRESLNAKGSTAPHLLVMTATPIPRTAAMT 588 Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQI--- 492 GD+DIS +TE P GRKPI+T ++P + E+ ++ + G++AY +CP+I Sbjct: 589 WFGDLDISWLTELPGGRKPIRTFVVPEANGPLMAEMFGLIRKRIDAGERAYVVCPRIDAD 648 Query: 493 ----------------------------EEKKES-----NFRSVVERFNSLHEHFTSSIA 519 +E++E + + ER SL + IA Sbjct: 649 AKDADDAGGSGDAEVGYAFDATYDLGEDDEQREQRPPLHSVAEIAERLRSLPQFAGIRIA 708 Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579 + GR D K +M F+ G +L+ATTVIEVG+DV AS ++I +A+ +GL+QLHQL Sbjct: 709 TLTGRDDDKTKSQIMADFEAGVTPILVATTVIEVGVDVAQASCMVIFDADRYGLSQLHQL 768 Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639 RGRVGRG S L+ P ++ RL V+ T DG IA+ DL+ R G++LG QS Sbjct: 769 RGRVGRGGTESGAFLISRAPEGSDAAKRLDVIAGTLDGAEIAQADLEFRGAGDVLGDAQS 828 Query: 640 GMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694 G L + D ++E AR +A ++ +DP L Q +L + NE F Sbjct: 829 GGKSGLKLLRVVKDVKIIEEARAEAAKLVAEDPTLQGYV-QLAGAVLDFTRGNETF 883 >gi|162447096|ref|YP_001620228.1| ATP-dependent DNA helicase [Acholeplasma laidlawii PG-8A] gi|161985203|gb|ABX80852.1| ATP-dependent DNA helicase [Acholeplasma laidlawii PG-8A] Length = 649 Score = 267 bits (682), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 187/582 (32%), Positives = 296/582 (50%), Gaps = 56/582 (9%) Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160 + LL F R + + F K+ V GK KN I + YI S+ ++ P I+ Y Sbjct: 86 VKLLIFGR--DYISKEFSLNDKVIVKGKYNMFKNEINVT---YI---SKKIDTPNIQPKY 137 Query: 161 SLP-------TGLSVDLFKKIIVEALSRLPVLPEWIEKD-LLQKKSFPSIAEAFNIIHNP 212 + + +F +V+ LP ++IE + L+ +K+ A +H P Sbjct: 138 QIEHISDRTIQKMIEYVFSNNLVDVFETLPT--KFIEHEKLMHRKT------AILTMHFP 189 Query: 213 RKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271 + D E A+ R +E + L M + K+ P++ + ++ + +P+ Sbjct: 190 KNETDLEI---AQYRFKVEEAFFHLMKYHLSMPPKLKR---TPLSYDIGWVKEQISLLPY 243 Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331 T Q+ A+ D +D M R++QGDVG+GKT V IA A+ AG Q +AP Sbjct: 244 QLTLDQQEAVNDCFRDFKSDYSMYRLIQGDVGTGKTFVTFIAALGAISAGYQVAFLAPTE 303 Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQA-------HRRKALERIAHGQAHIIIGTHA 384 ILA+QHYE K+ G++P +++ + R+ +I+ GTH Sbjct: 304 ILARQHYENFNKHF-----------GHLPSGLLTSSLKDKKETMNRLNSNDVNIVFGTHI 352 Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444 L +++ + KL LV++DEQH+FGV+ R L +K+ + ++ATPIPR+L LT G ++ Sbjct: 353 LSSEAVIFDKLGLVVIDEQHKFGVETRESLIKKSVTGDTIYLSATPIPRSLSLTYFGSLE 412 Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504 +S I +KP PI++ ++ I ++I LKV ++++ + P I E +S+ S+ Sbjct: 413 VSNIKQKPVNTPPIESYLLDDKDISKIIAALKVAGQNNEQSFIVVPAISEGNKSH--SIH 470 Query: 505 ERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 F+ L HF + +IHG++ + E +MD F +L++TT+IEVGIDV +AS I Sbjct: 471 SVFSILEPHFNPDNFYVIHGQLKYEEIELIMDRFMQNPKGILLSTTIIEVGIDVKNASTI 530 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623 II A++FGL+QLHQLRGRVGRG C + SK RL+ L T DGFL+++ Sbjct: 531 IIMGADNFGLSQLHQLRGRVGRGSIPGKCYFVS----SKKDVERLNFLLQTTDGFLLSQY 586 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665 DLK R G I QSG +F LL+ KD K+ Sbjct: 587 DLKLRGPGVFSSIIQSGYTRFEYLDLNTDLKLLQGIVKDVKY 628 >gi|47093048|ref|ZP_00230826.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes str. 4b H7858] gi|47018549|gb|EAL09304.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes str. 4b H7858] Length = 542 Score = 266 bits (681), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 179/533 (33%), Positives = 285/533 (53%), Gaps = 20/533 (3%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P + +G+G++ + L ++ + DLL+ P + D R +SE++ E +T Sbjct: 23 PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 75 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 I G + ++ R+ K+ T G++ + F+ + LK+ G +T++GK Sbjct: 76 IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKISVGETVTISGKWD 134 Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWI 189 K + ++ S++ +E VY L L +K A S + E I Sbjct: 135 KSRAQVTASKIKIGAVESEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEVI 190 Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFK 248 +LL+K EA I+H P K+ E AR R+ Y+E L Q+ + RK + + Sbjct: 191 PSNLLEKYQLMDRLEAVRILHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKIERE 247 Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 K GI IN + + + + ++PF TK+Q+ + +I DM M R+LQGDVGSGKT+ Sbjct: 248 KSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKTV 307 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VA IAM AA ++G Q+ +M P ILA+QH + + Q I V ++T ++ RR+ L Sbjct: 308 VASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRRELL 367 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428 + +G ++IGTHAL QD + Y++L LVI DEQHRFGV QR L +K P VL MTA Sbjct: 368 AMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMTA 427 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488 TPIPRTL +T+ G++D+S I E PAGRK I+T + +D VI ++ + +G + Y I Sbjct: 428 TPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYII 487 Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKN 539 CP I E ++ + ++ ++ FN L + + ++HG++ DKE +M F N Sbjct: 488 CPLIGESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNN 540 >gi|227485071|ref|ZP_03915387.1| RecG family helicase [Anaerococcus lactolyticus ATCC 51172] gi|227236904|gb|EEI86919.1| RecG family helicase [Anaerococcus lactolyticus ATCC 51172] Length = 663 Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 198/646 (30%), Positives = 339/646 (52%), Gaps = 57/646 (8%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L++ +G+G K + LSK+ + R DL Y+P + DR + + + S R Sbjct: 5 LTSLKGIGPKKAKALSKL----DIYTVR--DLYTYYPREYEDRRIKASVLKASPTR---- 54 Query: 73 TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF----YRKTEMLK-NVFFEGRKITVTG 127 + Y + + +R ++ ++ ++F ++K ++ N F RKI + Sbjct: 55 SYYFEWKAISKAYVKRLKNMI-------VSYMYFAEGDFKKIRVIWFNDRFSIRKIRLN- 106 Query: 128 KIKKLKNRIIMVHPHY-----IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182 + K ++ + +Y IF N I ++Y L +G+S I EAL Sbjct: 107 ETYKFYTKVAYKNGYYESVNPIFENLDGDMIGAIYSMYPLTSGISQKNLNAFIKEALKEF 166 Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS------PARERLAYDELLAG 236 V +D+L K S+ E FN++ + K+ + S A+ + +LL Sbjct: 167 DV-----REDILSK----SLKERFNLMDREKALKEVHFPSNLQTLFKAKTDIKIGDLLKE 217 Query: 237 QIALLLMRK--QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 I L + K + K++I + ++ ++IL + FS T+SQ ++K+IL+D + M Sbjct: 218 LIFLDYLGKLQRNKQDISLKYDL-----KEILAKLSFSLTRSQLRSLKEILEDSDKDISM 272 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R+L GDVGSGKT+VA+++M QA +M P +LA Q YE K + + + + Sbjct: 273 NRLLIGDVGSGKTIVAMVSMLVFGLNSYQAAMMVPTEVLAIQQYEKYKDFIGGFGLKLAL 332 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 +TG ++ + E + G +++GTHAL ++ +++ L LV+ DEQHRFGV+QR +L Sbjct: 333 LTG--SSKNKEEIKEGLRDGTIDMVVGTHALIEEDVKFRNLRLVVNDEQHRFGVRQRQEL 390 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 +K + L MTATPIPRTL L +D+S I E P GR + T I+ + + + E Sbjct: 391 AKKGIDANYLTMTATPIPRTLSLRINKMLDLSIINELPKGRASVITSIVNEDHQEFLFEN 450 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534 +K L G++ Y + I+ + ++ ++ +++ + + T + +HG++ KE ++ Sbjct: 451 IKEGLKAGRQVYVVSNNIDAEDTNSVENLYKKYKKIFK--THRVEKLHGKLKASLKEEIL 508 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F N +LI+TTVIEVGIDV +A+ ++I N+ +FGL+QLHQLRGRVGRGE S C L Sbjct: 509 KKFNNHEIDILISTTVIEVGIDVANANTMVIYNSNNFGLSQLHQLRGRVGRGEYDSYCYL 568 Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 + N ++L +L ++ DGF I+++D + R G+IL + Q G Sbjct: 569 VSKDV---NPKSKLKILVDSNDGFEISQKDYELRGGGKILSLIQHG 611 >gi|306992379|gb|ADN19306.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 442 Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 165/450 (36%), Positives = 265/450 (58%), Gaps = 14/450 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ E A+ R Y EL Sbjct: 59 ALKDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I++GTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASII 563 M+ F N +L++TTVIE G++V +A+++ Sbjct: 413 MEEFVNREIDILVSTTVIEEGVNVPNATVM 442 >gi|298708153|emb|CBJ30494.1| ATP-dependent DNA helicase RecG [Ectocarpus siliculosus] Length = 1002 Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 160/438 (36%), Positives = 242/438 (55%), Gaps = 67/438 (15%) Query: 284 ILQDMSQKN-----RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +L+DM RM R+LQGDVGSGKT VA +AM A G Q+ ++AP +L QH Sbjct: 29 VLKDMEGSGSCSSLRMFRLLQGDVGSGKTAVAFLAMLRAAGQGSQSCMLAPTEVLTVQHL 88 Query: 339 EFIKKYTQNTQ-------IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-LFQDSI 390 + ++ + + + VE++TG++ R++ L + G+ I++ THA L S Sbjct: 89 QTLRSMAEGIERPDGKGNLRVELLTGSIKGKARQQLLNDVKSGEVDILVATHAVLTSAST 148 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + L L +VDE+ RFGV+QR KLT A HVL ++ATPIPR+L L GD++IS+I E Sbjct: 149 AFRDLGLAVVDEEQRFGVEQRDKLT--GFAQHVLYLSATPIPRSLTLALFGDMEISQIRE 206 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR----SVVER 506 P G I+T +IP+ + EV++RLK G++ ++K ES+ R S ER Sbjct: 207 MPRGTANIETTLIPVAKAKEVMDRLK-----GRE------DTDDKSESSTRQHLASATER 255 Query: 507 FNSL-HEHFTSSIAIIHGRMSDIDKESVMDSFKNG----TCKLLIATTVIEVGIDVVDAS 561 +++L E + ++HG+M+ +K + F G ++L++T++IEVG+DV A Sbjct: 256 YDALVKELGEDRVTLLHGKMTSAEKNKRLSEFSGGEKGKGLRVLVSTSIIEVGVDVPRAG 315 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGE------------------------------EISS 591 + ++ENAE FGL+QLHQLRGR+GR + + S Sbjct: 316 VCVVENAEMFGLSQLHQLRGRLGRTDRGKRERSTTAPTGSLQQPASPEEDPSQDKRQTSH 375 Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM--PKFLIAQP 649 CILLY P + ++ RL ++ T DGFL+AE DL R GE+LG++Q G KF +A Sbjct: 376 CILLYGPDVGNDATERLKAVRKTRDGFLLAERDLALRGPGEVLGMRQKGYIEGKFKVADL 435 Query: 650 ELHDSLLEIARKDAKHIL 667 SL E A K A+ ++ Sbjct: 436 ARQGSLAEHASKRARRLV 453 >gi|153810839|ref|ZP_01963507.1| hypothetical protein RUMOBE_01223 [Ruminococcus obeum ATCC 29174] gi|149833235|gb|EDM88317.1| hypothetical protein RUMOBE_01223 [Ruminococcus obeum ATCC 29174] Length = 517 Score = 263 bits (672), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 168/519 (32%), Positives = 285/519 (54%), Gaps = 18/519 (3%) Query: 13 LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72 L T +GVG K K+ +T DLL Y+P ++ I+++ E + + Sbjct: 5 LRTLKGVGDKTEKLFFKL----GIYDTD--DLLHYYPRNYDAFEAPVDIADLEEGTVKAV 58 Query: 73 TGYISQHSSFQLQK-RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131 + + K R+ +ND +G++++++F L+ V + G+I + Sbjct: 59 SAAVCSGVYVTSAKGRQIITASINDSSGKLSVIWF--NMPYLRTVLKRDSQFVFRGRIVR 116 Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191 ++ + M HP + ++ VY L GLS K+I + L LP+ E++ + Sbjct: 117 KQSHLEMEHPEVFTPAAYGEILHSLQPVYGLTGGLSNKTVTKMIHQLLKNLPMYSEFLPE 176 Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251 ++ ++ I A IH P + E +R+RL +DE L +++ +++++ ++ Sbjct: 177 EIRERYQLADINYALRTIHFP---GNMEELLLSRKRLVFDEFLLFILSVQMLKEKSEETP 233 Query: 252 G-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310 PIN + ++I+ N+P+S T +Q + +I +DMS + M R++QGDVGSGKT++A Sbjct: 234 NYFPIN-KTWTTEQIIENLPYSLTGAQLNTWHEIERDMSGQALMSRLVQGDVGSGKTIIA 292 Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIK-KYTQNTQIIVEIITGNMPQAHRRKAL 368 +AM A E G QA +MAP +LA+QHY+ F++ + Q V ++TG+ +R+ Sbjct: 293 FLAMILACENGYQAALMAPTEVLARQHYDGFLRLQEEQGLNFHVVLLTGSNTAREKREIY 352 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428 + IA G+A IIIGTHAL Q+ ++Y+ L LV+ DEQHRFGV+QR LT + P++L+M+A Sbjct: 353 QHIASGEAQIIIGTHALIQEKVEYHDLALVVTDEQHRFGVKQREALTTRGNPPNILVMSA 412 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488 TPIPRTL + GD+DIS I E PA R PIK ++ + + ++ + EG++AY I Sbjct: 413 TPIPRTLAIILYGDLDISIIDELPAKRLPIKNCVVNTSYRPKAYAFIQRQVREGRQAYII 472 Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRM 525 CP +EE + + +V++ L F S I + +HG+M Sbjct: 473 CPMVEESEGLDAENVLDYTRKLKGIFPSDINVSFLHGKM 511 >gi|306992259|gb|ADN19246.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 430 Score = 261 bits (666), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 162/438 (36%), Positives = 256/438 (58%), Gaps = 14/438 (3%) Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177 G + + GK++ ++I+ +P + S+D +N I +Y L GL+ + +KI+ Sbjct: 1 GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58 Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236 AL + + E+ +++ L +K I A I+ P+ + A+ R Y EL Sbjct: 59 ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNE---AYLEQAKYRFKYQELFLL 115 Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 Q+AL L+++ K + GI VE K L +PF T +Q +K+I+ DM+ M Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++QGDVGSGKT+VA +M AV+ G Q +MAP ILA+QHY +K+ +NT I + ++ Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 +G++ +++++ LE+I +G I+IGTHAL +D + + L L I DEQHRFGV+QR LT Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +K P VL+MTATPIPRTL L GD+DIS I + P GRK +KT +I + + E Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533 + +G++ Y +CP IEE + N S + +++ + + ++HG+M+D DKE V Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412 Query: 534 MDSFKNGTCKLLIATTVI 551 M+ F NG +L++TTVI Sbjct: 413 MEEFVNGKIDILVSTTVI 430 >gi|269215473|ref|ZP_06159327.1| ATP-dependent DNA helicase RecG [Slackia exigua ATCC 700122] gi|269130960|gb|EEZ62035.1| ATP-dependent DNA helicase RecG [Slackia exigua ATCC 700122] Length = 723 Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 204/636 (32%), Positives = 322/636 (50%), Gaps = 49/636 (7%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY---KILLNDGTG 99 DL+ ++P +ID I VTI G + H + RR ++ + DGTG Sbjct: 39 DLVQHYPRRYIDMTRLDTIEHAPLGERVTIIGEV--HEVVLKRPRRDLSLVEVTVVDGTG 96 Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA- 158 + + FF K L+ +G ++ V+G+++ M P F + D P++ Sbjct: 97 TLIVTFF--KQPWLQRSIRQGMRVGVSGELEFNYGYKRMKSP---FLDVIDEGGPMLAGS 151 Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215 V+ +S + +K+I AL+ + + + L + S A A IH P+ A Sbjct: 152 IIPVHGATEKVSAGIMRKVIRAALASIQGCFDPLPLRLRTRYRLMSRAAALASIHFPQTA 211 Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPT 274 D + A+ RLAY+ELL ++ LL + F + ++V +G ++ + +PFS T Sbjct: 212 DDI---AQAKRRLAYEELLLLEMHLLASARSFTQGKAAHVHVFDGPFSRALSAALPFSLT 268 Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334 Q A+ DI M+ + M +L GDVG+GKT+VA A AAA +A Q ++MAP +LA Sbjct: 269 DDQLRAVADIQGRMATDSAMSHLLLGDVGTGKTIVAAFAAAAAADARAQTLMMAPTEVLA 328 Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394 Q+ + I ++TG+ P A RR L + G ++ GTHAL + + + Sbjct: 329 SQYARALGPLFDAAGITWALLTGSTPDADRRDMLALLESGHIDVLFGTHALIEPDVVCHD 388 Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454 LVIVDEQ RFGV+QR L K P L MTATPIPRTL L G++ +S + + P Sbjct: 389 CGLVIVDEQQRFGVRQRADLLAKGVLPDALYMTATPIPRTLALALYGNLSLSYLKDMPEN 448 Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK-------------KESNFR 501 R T ++ + ++ ++G++A+ ICP + K E++ Sbjct: 449 RPGRTTHVLGFRERGRAYDAVRAACAKGRQAFVICPLVGTKPPRDEGAHPRPRDDEADRE 508 Query: 502 SVVERFNSLHEHFTSS-----------------IAIIHGRMSDIDKESVMDSFKNGTCKL 544 ++ F+ L E+ + + ++HG+M +KE M F+ G + Sbjct: 509 PFIDSFDDLPENNVRAAEAEAAFLQAKVFKEFRVGLLHGKMKPAEKEEAMARFREGGIDV 568 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 L+ATTV+EVG+DV +A+ +++E+AE FGL+QLHQLRGRVGRG + L S + Sbjct: 569 LVATTVVEVGVDVPNATCMVVEDAERFGLSQLHQLRGRVGRGGMRGE-VYLVAATSSDEA 627 Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 RLS ++ T+DGF +AE DL R+EG+ILG +Q G Sbjct: 628 LERLSAMEATDDGFELAERDLALRREGDILGNRQHG 663 >gi|194246457|ref|YP_002004096.1| ATP-dependent DNA helicase [Candidatus Phytoplasma mali] gi|193806814|emb|CAP18241.1| ATP-dependent DNA helicase [Candidatus Phytoplasma mali] Length = 626 Score = 258 bits (658), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 166/477 (34%), Positives = 275/477 (57%), Gaps = 32/477 (6%) Query: 173 KIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231 KII L++ P ++ E + +++K +F + EAF +H P + + A +RL Y+ Sbjct: 152 KIIKYILNKYPQLIKENLPLKIIKKYNFMTRIEAFKNLHLPENNQKLKL---AFKRLKYE 208 Query: 232 ELLAGQIALLLMRK--QFKKEIGI--PINVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287 E A ++ +K Q KK + P+ K+ +KI+ IPF T SQ+ I I +D Sbjct: 209 E------AFIISKKLFQIKKNLPFKDPLEYNIKLVKKIITTIPFELTLSQKKTINSIYKD 262 Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY-EFIKKYTQ 346 +++++ R++QGDVGSGKT++A ++ + A Q ++MAP ILAQQHY F K + Sbjct: 263 FKKQHQVQRLIQGDVGSGKTIIAFLSAFGVITAYKQVLMMAPTEILAQQHYLNFNKMFPG 322 Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 +I+ + ++I + + +IIGTH L +I ++ L LVI+DEQH+F Sbjct: 323 VKSVIL-----TSKNKKKEILKKQIKNNEIQMIIGTHIL--ANIDFFSLGLVIIDEQHKF 375 Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466 G++ + K K +++ +TATPIP+TL LT L +I++S + + K + T I Sbjct: 376 GLEIKQKAIFKDPTANIIYLTATPIPKTLALTYLENIEVSFVEKNEMLNKKVITQQI--- 432 Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMS 526 + +++E LK + Y + P I++ K+ NF ++V+ + L ++ I+HG+ + Sbjct: 433 KKRQMLEILKKNQQNNSQTYIVVPAIKDNKK-NF-NIVQITDYLETANIDNLYILHGKQN 490 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 +E+++ +F N C +L+ATT+IEVGID+ + + III A +FGL+QLHQLRGRVGRG Sbjct: 491 KEKQETLIKNFINNKCGILLATTIIEVGIDIPNVNTIIILGANYFGLSQLHQLRGRVGRG 550 Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643 + C L +++ RL +L+ DGF+++ DLK+R GE LG+KQSG K Sbjct: 551 YKQGYCFL-----ITEKENERLKILQKEHDGFVLSNYDLKKRGPGEFLGLKQSGYFK 602 >gi|225873359|ref|YP_002754818.1| ATP-dependent DNA helicase RecG [Acidobacterium capsulatum ATCC 51196] gi|225793108|gb|ACO33198.1| ATP-dependent DNA helicase RecG [Acidobacterium capsulatum ATCC 51196] Length = 775 Score = 257 bits (656), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 156/476 (32%), Positives = 260/476 (54%), Gaps = 21/476 (4%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102 DLL + P + DR + + ++ + ++ + + + +++ + GT + Sbjct: 32 DLLLHLPFRYEDRLHPRALMDLVPGEMASVIAEVRGTILLRTRNMPIFEMTVGQGTTAMK 91 Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN--RIIMVHPHY-IFHNSQDVNFPLIEA- 158 ++F+ LK+ F G+ + + GK++ ++ M+ P + +D ++E Sbjct: 92 CIWFH--GTYLKDRFQAGQTVALFGKVEPSRSTKNFKMIQPQVEVLREGKDQEDEMLEVG 149 Query: 159 ----VYSLPTG--LSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHN 211 VY G LS ++++ L + +PE + + LL + PS EA ++H Sbjct: 150 RITPVYESLGGSQLSTRWIRRVLFHLLREIEGNVPETLPRSLLLRLGLPSREEALKLVHF 209 Query: 212 PRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267 P W +PA +RL ++EL ++ L L R++F + G+P + K+ + Sbjct: 210 PAAGTAVSTLQGWATPAHKRLIFEELFYLELGLELKRRKFHERQGLPFRADDKVRAALRA 269 Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 +PF PT +Q+ A+ +I+ DM Q M R+LQGDVGSGKT+VA+ AM A+E G QA +M Sbjct: 270 ILPFHPTAAQKRALGEIVADMRQPRPMRRLLQGDVGSGKTIVAVQAMVIAMENGYQAALM 329 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEII--TGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 AP ILA QHY ++ + ++ I+ TG++ + +R +I G+A ++IGTHAL Sbjct: 330 APTEILATQHYLAARRLLEKSKRPYRIVLLTGSLDEGVKRANRGKIYRGEADLVIGTHAL 389 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA--TAPHVLLMTATPIPRTLVLTSLGDI 443 ++ +++ L L++VDEQHRFGV QR +L +K P VL MTATPIPRTL L+ GD+ Sbjct: 390 IEEKVEFANLGLIVVDEQHRFGVLQRFRLMKKPNQAEPDVLAMTATPIPRTLALSLYGDL 449 Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499 D+S I E P GR PI T IP + DEV + ++ ++EG++AY + P IE K+ Sbjct: 450 DLSVIDELPPGRTPIVTRRIPEEKADEVWQFVRAQVAEGRQAYVVYPVIEGSKDDQ 505 Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 69/153 (45%), Positives = 102/153 (66%), Gaps = 2/153 (1%) Query: 497 ESNFRSVVERFNSLH--EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554 ++ RS E ++SL + ++HGR+S DK+ M F+ G +LI+TTVIEVG Sbjct: 573 KTPLRSATEMYDSLRTGALAGLRLGLLHGRLSADDKDVTMKRFQQGEIDVLISTTVIEVG 632 Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614 +DV +AS++++E+AE FGLAQLHQLRGRVGRG S C+L+ +S RL+ +++T Sbjct: 633 VDVPNASVMVVEHAERFGLAQLHQLRGRVGRGAAKSYCLLVESGRVSPQGEQRLAAMEHT 692 Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 +DGF +AE DL+ R GE G +Q+G+P F +A Sbjct: 693 QDGFELAEMDLQLRGPGEFFGTRQAGLPDFRVA 725 >gi|306992293|gb|ADN19263.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis] Length = 408 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 155/413 (37%), Positives = 243/413 (58%), Gaps = 12/413 (2%) Query: 144 IFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFP 200 + S+D +N I +Y L GL+ + +KI+ AL + + E+ +++ L +K Sbjct: 2 VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYVQEIEEFFDEEFLFEKGLM 61 Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEG 259 I A I+ P+ + A+ R Y EL Q+AL L+++ K + GI VE Sbjct: 62 DIKNALININFPQNE---AYLEQAKYRFKYQELFLLQMALFLVKRSVKGKKGIKFERVEL 118 Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319 K L +PF T +Q +K+I+ DM+ M R++QGDVGSGKT+VA +M AV+ Sbjct: 119 K---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLVQGDVGSGKTVVAACSMYIAVK 175 Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379 G Q +MAP ILA+QHY +K+ +NT I + +++G++ +++++ LE+I +G I+ Sbjct: 176 NGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISPSNKKEVLEKIKNGDYDIV 235 Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439 +GTHAL +D + + L L I DEQHRFGV+QR LT+K P VL+MTATPIPRTL L Sbjct: 236 VGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGENPDVLVMTATPIPRTLALIL 295 Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499 GD+DIS I + P+GRK +KT +I + + E + +G++ Y +CP IEE + N Sbjct: 296 YGDLDISIIDQLPSGRKKVKTYVISSSVRKKAYEFAMKEVKKGRQVYVVCPLIEESDKIN 355 Query: 500 FRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550 S + +++ + + ++HG+M+D DKE VM+ F NG +L++TTV Sbjct: 356 AMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFVNGKIDILVSTTV 408 >gi|295836314|ref|ZP_06823247.1| ATP-dependent DNA helicase RecG [Streptomyces sp. SPB74] gi|295825956|gb|EFG64571.1| ATP-dependent DNA helicase RecG [Streptomyces sp. SPB74] Length = 772 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 158/489 (32%), Positives = 252/489 (51%), Gaps = 43/489 (8%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGE 100 DLL ++P + +R +++E+ + VT+ +++ +F + + ++ L DG+G Sbjct: 31 DLLHHYPRRYAERGELTRLAELPLDEHVTVVARVAEARVLTFNAGRGKRLEVTLTDGSGR 90 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVN------- 152 + L+FF R ++ G + GK+ ++ + HP Y + D Sbjct: 91 LQLVFFGRGVHKPQHDLLPGTRAMFAGKVSVFNRKLQLAHPAYELLAEESDAREAAGSWA 150 Query: 153 ------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206 +P + S +VD EAL LP L + + + EA Sbjct: 151 SSLLPIYPATAKLESWKIAKAVDAVLPSASEALDPLP-------DSLREGRGLLPLPEAL 203 Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKI 265 IH P+ + E AR+RL +DE Q AL R + +P + Sbjct: 204 VKIHRPQSKAEVEA---ARDRLKWDEAFVLQTALARRRHADAQLPAVPRRPASDGLLTAF 260 Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 +PF+ T+ Q ++I D++ + M R+LQG+VGSGKT+VAL AM A V+AGGQAV Sbjct: 261 DARLPFTLTEGQRKVSREIFDDLATDHPMHRLLQGEVGSGKTMVALRAMLAVVDAGGQAV 320 Query: 326 IMAPIGILAQQHYEFIKKYTQNT-----------QIIVEIITGNMPQAHRRKALERIAHG 374 ++AP +LAQQH+ I + + V ++TG+M A RRK L + G Sbjct: 321 MLAPTEVLAQQHHRSITEMMGDLASGGTLGAAEHATGVVLLTGSMGAAARRKVLLDLVTG 380 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVLLMTATPIPR 433 +A I+IGTHAL +D ++++ L LV+VDEQHRFGV+QR L K A PH+L+MTATPIPR Sbjct: 381 EAGIVIGTHALIEDVVKFHDLGLVVVDEQHRFGVEQRDALRSKGARPPHLLVMTATPIPR 440 Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWIC 489 T+ +T GD++ S + + PAGR PI T ++P + ER++ + G +AY +C Sbjct: 441 TVAMTVFGDLETSVLDQLPAGRSPIATHVVPAQDKPHFLARAWERVREEAAAGHQAYVVC 500 Query: 490 PQIEEKKES 498 P+I +++E+ Sbjct: 501 PRIGDEEET 509 Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 65/162 (40%), Positives = 100/162 (61%), Gaps = 4/162 (2%) Query: 518 IAIIHGRM---SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 I I+HGRM K++VM F +L+ATTVIEVG++V +A+ ++I +A+ FG++ Sbjct: 588 IGILHGRMVPDGPDGKDAVMRRFAAAELDVLVATTVIEVGVNVPNATAMVIMDADRFGVS 647 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG C+L+ P + + RL + T DGF ++ DL+QR+EG++L Sbjct: 648 QLHQLRGRVGRGSAPGLCLLVTDMPEASPARARLGAVAATLDGFELSRVDLEQRREGDVL 707 Query: 635 GIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTS 675 G QSG+ L + D ++ AR++A ++ DP L + Sbjct: 708 GQAQSGVRSSLRMLAVIEDEQIIAEAREEATAVVAADPALEA 749 >gi|257413332|ref|ZP_05591609.1| ATP-dependent DNA helicase RecG [Roseburia intestinalis L1-82] gi|257203890|gb|EEV02175.1| ATP-dependent DNA helicase RecG [Roseburia intestinalis L1-82] Length = 550 Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 171/537 (31%), Positives = 260/537 (48%), Gaps = 26/537 (4%) Query: 11 APLSTFRGVGKKYSLFLSKI--INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 +PL +GVG K KI G D+L ++P ++I + E+ + Sbjct: 5 SPLREIKGVGAKTEELFHKIGVYTVG--------DILLHYPRTYIQYPQAKHVDEVLDGE 56 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128 + G I++ + + + G L +YR M KN G GK Sbjct: 57 QAAVLGRITRTPVVRKVRTMQITVTTISEMGASLELVWYRMPYM-KNNLKVGSTYIFYGK 115 Query: 129 IKKLKNRIIMVHPHYI----FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184 + K R++M + + + V P VY+L GLS +L K + AL + Sbjct: 116 VNKKNGRLVMEQAAMFTEEQYASMEQVFLP----VYTLTNGLSNNLVTKTVRAALGDEHL 171 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 +++ + +K A IH P +D E AR RL +DE +++ + Sbjct: 172 FMDYLPHAIREKYGLCEYNYAIRQIHFP---EDMETLITARRRLVFDEFFLFILSMQYQK 228 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 ++ KE + E +++ +P+ T +Q+ A+ D+ +DM + M R++QGDVGS Sbjct: 229 EKHVKEKNEFVFAEDDFTDELIERLPYELTNAQKKALADVKRDMRSETVMQRLIQGDVGS 288 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQA 362 GKT+VA +AMA G Q+ IMAP +LA+QHYE + + I + ++TG+M Sbjct: 289 GKTIVAFLAMADTAHNGYQSAIMAPTEVLARQHYESYQSMCEQFGLHIPIVLLTGSMTAK 348 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 +R+A E + +IIGTHAL Q+ Y L LVI DEQHRFGV+QR K T PH Sbjct: 349 QKRRAYEALEVYSNAMIIGTHALIQEKAIYQNLALVITDEQHRFGVRQRETFAGKGTEPH 408 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 VL+M+ATPIPRTL + GD+DIS I E PA R PIK ++ + ++ + EG Sbjct: 409 VLVMSATPIPRTLAIIIYGDLDISVIDEVPAKRLPIKNCVVDQRYRPKAYAFIEHEIREG 468 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSF 537 +AY ICP +EE + +V + L E I I +HG+M K +MD F Sbjct: 469 HQAYVICPLVEESENMEAENVTDYAKRLREELPEDIVIGVLHGQMKAEQKNKIMDQF 525 >gi|242066222|ref|XP_002454400.1| hypothetical protein SORBIDRAFT_04g030170 [Sorghum bicolor] gi|241934231|gb|EES07376.1| hypothetical protein SORBIDRAFT_04g030170 [Sorghum bicolor] Length = 409 Score = 254 bits (648), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 146/388 (37%), Positives = 221/388 (56%), Gaps = 35/388 (9%) Query: 318 VEAGGQAVIMAPIGILAQQHYE----FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373 V +G QA M P +LA QHYE ++K+ + + + ++TG+ R + Sbjct: 4 VNSGFQAAFMVPTEVLAVQHYEHLTSLLEKFDGDEKPNIALLTGSTSTRESRIIRNGLKT 63 Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA--------------- 418 G+ ++IGTH+L D + L + ++DEQ RFGV QR + K Sbjct: 64 GEIAMVIGTHSLIADKTDFSSLRISVIDEQQRFGVVQRGRFNSKLYTSSSKLSDENTSSD 123 Query: 419 --------TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI-- 468 APHVL M+ATPIPRTL L GD+ +++IT+ P GR+PI+T+ + N + Sbjct: 124 ETSDSETFMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRQPIETLALEGNDVGF 183 Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526 + V + ++ L +G K Y + P I+E ++ R+ F+S+ + F ++HGRM Sbjct: 184 ETVFQMMRDELLDGGKVYLVYPIIDESEQLPQLRAATAEFDSIKKKFEGYPCGLLHGRMR 243 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 +KE + SF++G ++L++T VIE+G+DV DAS++I+ NAE FG+AQLHQLRGRVGRG Sbjct: 244 SNEKEEALSSFRSGETRILLSTQVIEIGVDVPDASMMIVMNAERFGIAQLHQLRGRVGRG 303 Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFL 645 E S CI L + ++ RL VL+ + DGF +A DL R G +LG KQSG +P+F Sbjct: 304 ERKSRCIFLAS---TLSTLPRLKVLEKSSDGFYLANADLLLRGPGNLLGKKQSGHLPEFP 360 Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDL 673 IA+ E+ S+L+ A A +L DL Sbjct: 361 IARLEIDGSILQEAHLAALKVLVASNDL 388 >gi|333024198|ref|ZP_08452262.1| putative ATP-dependent DNA helicase RecG [Streptomyces sp. Tu6071] gi|332744050|gb|EGJ74491.1| putative ATP-dependent DNA helicase RecG [Streptomyces sp. Tu6071] Length = 775 Score = 254 bits (648), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 158/490 (32%), Positives = 257/490 (52%), Gaps = 45/490 (9%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGE 100 DLL ++P + +R +++E+ + VT+ ++ +F + + ++ + DG+G Sbjct: 31 DLLHHYPRRYAERGELTRLAELPLDEHVTVVARVADARVHTFNAGRGKRLEVTITDGSGR 90 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVN------- 152 + L+FF R ++ G + GK+ ++ + HP Y + D Sbjct: 91 LQLVFFGRGVHKPQHDLLPGTRAMFAGKVSVFNRKLQLAHPAYELLAEESDAREAAGTWA 150 Query: 153 ------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206 +P + S +VD EAL LP L + + + EA Sbjct: 151 SSLLPIYPATAKLESWKIAKAVDAVLPSANEALDPLP-------DSLREGRGLLPLPEAL 203 Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP--INVEGKIAQK 264 IH P+ + E AR+RL +DE Q AL R + +P +G +A Sbjct: 204 VKIHRPQSKTEVEA---ARDRLKWDEAFVLQTALARRRHADAQLPAVPRCPAPDGLLAAF 260 Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324 R +PF+ T+ Q+ ++I D++ + M R+LQG+VGSGKT+VAL AM A V+AGGQA Sbjct: 261 DAR-LPFTLTEGQQKVSREIFDDLATDHPMHRLLQGEVGSGKTMVALRAMLAVVDAGGQA 319 Query: 325 VIMAPIGILAQQHYEFIKKYTQNT-----------QIIVEIITGNMPQAHRRKALERIAH 373 ++AP +LAQQH+ I + + V ++TG++ A RRKAL + Sbjct: 320 AMLAPTEVLAQQHHRSITEMMGDLASGGTLGAAEHATGVVLLTGSLGAAARRKALLDLVT 379 Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVLLMTATPIP 432 G+A ++IGTHAL +D ++++ L LV+VDEQHRFGV+QR L K A PH+L+MTATPIP Sbjct: 380 GEAGVVIGTHALIEDVVKFHDLGLVVVDEQHRFGVEQRDALRSKGAQPPHLLVMTATPIP 439 Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWI 488 RT+ +T GD++ S + + PAGR PI T ++P + ER++ ++ G +AY + Sbjct: 440 RTVAMTVFGDLETSVLDQLPAGRSPIATHVVPAQDKPHFLARAWERVREEVAAGHQAYVV 499 Query: 489 CPQIEEKKES 498 CP+I +++E+ Sbjct: 500 CPRIGDEEET 509 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 66/162 (40%), Positives = 102/162 (62%), Gaps = 4/162 (2%) Query: 518 IAIIHGRMSDID---KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 I I+HGRM+ K++VM F G +L+ATTVIEVG++V +A+ ++I +A+ FG++ Sbjct: 591 IGILHGRMAPDGPDGKDAVMRRFAAGELDVLVATTVIEVGVNVPNATAMVIMDADRFGVS 650 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG C+L+ P + + RL + T DGF ++ DL+QR+EG++L Sbjct: 651 QLHQLRGRVGRGSAPGLCLLVTDMPEASPARARLGAVAATLDGFELSRVDLEQRREGDVL 710 Query: 635 GIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTS 675 G QSG+ L + D ++ AR++A ++ DP L + Sbjct: 711 GQAQSGVRSSLRMLAVIEDEQIIAEAREEATAVVAADPALEA 752 >gi|160883181|ref|ZP_02064184.1| hypothetical protein BACOVA_01150 [Bacteroides ovatus ATCC 8483] gi|156111406|gb|EDO13151.1| hypothetical protein BACOVA_01150 [Bacteroides ovatus ATCC 8483] Length = 327 Score = 254 bits (648), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 134/301 (44%), Positives = 197/301 (65%), Gaps = 3/301 (0%) Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVLLMTATPIPRTLV 436 I+IGTHA+ +D++ + L V++DEQHRFGV QR +L K PHVL+MTATPIPRTL Sbjct: 3 ILIGTHAVIEDTVNFSSLGFVVIDEQHRFGVAQRARLWSKNVQPPHVLVMTATPIPRTLA 62 Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496 +T GD+D+S I E P GRKPI T+ NR + + ++ + EG++ Y + P I+E + Sbjct: 63 MTLYGDLDVSVIDELPPGRKPITTIHQFDNRRESMYRSVRKQIDEGRQVYIVYPLIKESE 122 Query: 497 ESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555 + + +++ E + + E F ++ +HG+M +K+ M F +G ++++ATTVIEVG+ Sbjct: 123 KIDLKNLEEGYQHILEEFPKCTVCKVHGKMKPAEKDEQMQLFVSGKAQIMVATTVIEVGV 182 Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615 +V +AS++IIENAE FGL+QLHQLRGRVGRG E S CIL+ + L++++ RL ++ T Sbjct: 183 NVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCILVTNYKLTEDTRKRLEIMVRTN 242 Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 DGF IAE DLK R G++ G +QSG+ IA LL+ R A+ I+ QDP Sbjct: 243 DGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIVRDGQLLQYVRAIAESIVEQDPAAQ 302 Query: 675 S 675 S Sbjct: 303 S 303 >gi|212716752|ref|ZP_03324880.1| hypothetical protein BIFCAT_01689 [Bifidobacterium catenulatum DSM 16992] gi|212660456|gb|EEB21031.1| hypothetical protein BIFCAT_01689 [Bifidobacterium catenulatum DSM 16992] Length = 912 Score = 253 bits (647), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 148/377 (39%), Positives = 207/377 (54%), Gaps = 48/377 (12%) Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404 T++ +I V ++TG M A RR+ L A G I++ THA F S Q L L ++DEQH Sbjct: 512 TKDGEIPVFLLTGGMRLAERRRILAAAASGMPCIVVATHAAFSKSFQAPNLTLAVIDEQH 571 Query: 405 RFGVQQRLKLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463 RFGV+QR L K ATAPH+L+MTATPIPRT +T GD+DIS +TE P GRKPI+T ++ Sbjct: 572 RFGVEQRESLNSKGATAPHLLVMTATPIPRTAAMTWFGDLDISALTELPGGRKPIRTFVV 631 Query: 464 PINR---IDEVIERLKVVLSEGKKAYWICPQIEEKKE-----------SNFRS------- 502 P + + E+ ++ + G+ AY +CP+I++ E SN ++ Sbjct: 632 PESNASLMSEMFALIRKRIDAGELAYVVCPRIDDDSENADDVLAESATSNSKTTGSPIPA 691 Query: 503 -------------------------VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537 +VER SL + A + GR D K VM F Sbjct: 692 FDEAYDLGEDDEQRAQRPPLHSVAEIVERLQSLPQFKGIRFATLTGRDDDTTKSQVMADF 751 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 + G +L+ATTVIEVG+DV AS I+I +A+ +GL+QLHQLRGRVGRG S L+ Sbjct: 752 EAGITPILVATTVIEVGVDVAKASCIVIFDADRYGLSQLHQLRGRVGRGGTDSGAFLISR 811 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLL 656 P ++ RL V++ T DG IA+ DL+ R G++LG QSG L + D ++ Sbjct: 812 APADSDAARRLDVIQGTLDGAEIAQADLEFRGAGDVLGDAQSGGKTGLKLLRVVKDVKII 871 Query: 657 EIARKDAKHILTQDPDL 673 E AR +A ++ DPDL Sbjct: 872 EQARAEATQLVAADPDL 888 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 67/179 (37%), Positives = 98/179 (54%), Gaps = 8/179 (4%) Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 +P+ I +D +K AEAF IH+P K+F+ A + L Y+E L Q AL+ Sbjct: 259 AIPDIIPEDFREKYGLMHRAEAFMAIHDPVDRKNFDN---ALQTLRYEEALICQTALVKT 315 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 R +K +V ++ + ++PF+ T Q I DI DM++ M R+LQG+VG Sbjct: 316 RDASRKNRATACSVT-RLKDDFIASLPFALTSGQRQVIADISADMTRDYPMQRLLQGEVG 374 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY----EFIKKYTQNTQIIVEIITGN 358 SGKT+VA+ AM AV +GGQAV++AP +LA+QHY + + K T I GN Sbjct: 375 SGKTVVAVAAMMQAVGSGGQAVLVAPTQVLAEQHYASISKMVAKLTDADDKTASAIQGN 433 >gi|318056542|ref|ZP_07975265.1| ATP-dependent DNA helicase RecG [Streptomyces sp. SA3_actG] gi|318076716|ref|ZP_07984048.1| ATP-dependent DNA helicase RecG [Streptomyces sp. SA3_actF] Length = 778 Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 156/489 (31%), Positives = 252/489 (51%), Gaps = 43/489 (8%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGE 100 DLL ++P + +R +++E+ + VT+ ++ +F + + ++ + DG+G Sbjct: 31 DLLHHYPRRYAERGELTRLAELPLDEHVTVVARVADARVHTFNAGRGKRLEVTITDGSGR 90 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVN------- 152 + L+FF R ++ G + GK+ ++ + HP Y + D Sbjct: 91 LQLVFFGRGVHKPQHDLLPGTRAMFAGKVSVFNRKLQLAHPAYELLAEESDAREAAGTWA 150 Query: 153 ------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206 +P + S +VD EAL LP L + + + EA Sbjct: 151 SSLLPIYPATAKLESWKIAKAVDAVLPSANEALDPLP-------DSLREGRGLLPLPEAL 203 Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKI 265 IH P+ + E AR+RL +DE Q AL R + +P + Sbjct: 204 VKIHRPQSKAEVEA---ARDRLKWDEAFVLQTALARRRHADAQLPAVPRRPAPDGLLTAF 260 Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 +PF+ T+ Q+ ++I D++ + M R+LQG+VGSGKT+VAL AM A V+AGGQA Sbjct: 261 DARLPFTLTEGQQKVSREIFDDLATDHPMHRLLQGEVGSGKTMVALRAMLAVVDAGGQAA 320 Query: 326 IMAPIGILAQQHYEFIKKYTQNT-----------QIIVEIITGNMPQAHRRKALERIAHG 374 ++AP +LAQQH+ I + + V ++TG+M A RRK L + G Sbjct: 321 MLAPTEVLAQQHHRSITEMMGDLASGGTLGAAEHATGVVLLTGSMGAAARRKVLLDLVTG 380 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVLLMTATPIPR 433 +A I+IGTHAL +D ++++ L LV+VDEQHRFGV+QR L K A PH+L+MTATPIPR Sbjct: 381 EAGIVIGTHALIEDVVKFHDLGLVVVDEQHRFGVEQRDALRSKGAQPPHLLVMTATPIPR 440 Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWIC 489 T+ +T GD++ S + + PAGR PI T ++P + ER++ ++ G +AY +C Sbjct: 441 TVAMTVFGDLETSVLDQLPAGRSPIATHVVPAQDKPHFLARAWERVREEVAAGHQAYVVC 500 Query: 490 PQIEEKKES 498 P+I +++E+ Sbjct: 501 PRIGDEEET 509 Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 66/162 (40%), Positives = 102/162 (62%), Gaps = 4/162 (2%) Query: 518 IAIIHGRMSDID---KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 I I+HGRM+ K++VM F G +L+ATTVIEVG++V +A+ ++I +A+ FG++ Sbjct: 594 IGILHGRMAPDGPDGKDAVMRRFAAGELDVLVATTVIEVGVNVPNATAMVIMDADRFGVS 653 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG C+L+ P + + RL + T DGF ++ DL+QR+EG++L Sbjct: 654 QLHQLRGRVGRGSAPGLCLLVTDMPEASPARARLGAVAATLDGFELSRVDLEQRREGDVL 713 Query: 635 GIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTS 675 G QSG+ L + D ++ AR++A ++ DP L + Sbjct: 714 GQAQSGVRSSLRMLAVIEDEQIIAEAREEATAVVAADPALEA 755 >gi|302522130|ref|ZP_07274472.1| ATP-dependent DNA helicase RecG [Streptomyces sp. SPB78] gi|302431025|gb|EFL02841.1| ATP-dependent DNA helicase RecG [Streptomyces sp. SPB78] Length = 768 Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 156/489 (31%), Positives = 252/489 (51%), Gaps = 43/489 (8%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGE 100 DLL ++P + +R +++E+ + VT+ ++ +F + + ++ + DG+G Sbjct: 21 DLLHHYPRRYAERGELTRLAELPLDEHVTVVARVADARVHTFNAGRGKRLEVTITDGSGR 80 Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVN------- 152 + L+FF R ++ G + GK+ ++ + HP Y + D Sbjct: 81 LQLVFFGRGVHKPQHDLLPGTRAMFAGKVSVFNRKLQLAHPAYELLAEESDAREAAGTWA 140 Query: 153 ------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206 +P + S +VD EAL LP L + + + EA Sbjct: 141 SSLLPIYPATAKLESWKIAKAVDAVLPSANEALDPLP-------DSLREGRGLLPLPEAL 193 Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKI 265 IH P+ + E AR+RL +DE Q AL R + +P + Sbjct: 194 VKIHRPQSKAEVEA---ARDRLKWDEAFVLQTALARRRHADAQLPAVPRRPAPDGLLTAF 250 Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 +PF+ T+ Q+ ++I D++ + M R+LQG+VGSGKT+VAL AM A V+AGGQA Sbjct: 251 DARLPFTLTEGQQKVSREIFDDLATDHPMHRLLQGEVGSGKTMVALRAMLAVVDAGGQAA 310 Query: 326 IMAPIGILAQQHYEFIKKYTQNT-----------QIIVEIITGNMPQAHRRKALERIAHG 374 ++AP +LAQQH+ I + + V ++TG+M A RRK L + G Sbjct: 311 MLAPTEVLAQQHHRSITEMMGDLASGGTLGAAEHATGVVLLTGSMGAAARRKVLLDLVTG 370 Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVLLMTATPIPR 433 +A I+IGTHAL +D ++++ L LV+VDEQHRFGV+QR L K A PH+L+MTATPIPR Sbjct: 371 EAGIVIGTHALIEDVVKFHDLGLVVVDEQHRFGVEQRDALRSKGAQPPHLLVMTATPIPR 430 Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWIC 489 T+ +T GD++ S + + PAGR PI T ++P + ER++ ++ G +AY +C Sbjct: 431 TVAMTVFGDLETSVLDQLPAGRSPIATHVVPAQDKPHFLARAWERVREEVAAGHQAYVVC 490 Query: 490 PQIEEKKES 498 P+I +++E+ Sbjct: 491 PRIGDEEET 499 Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 66/162 (40%), Positives = 102/162 (62%), Gaps = 4/162 (2%) Query: 518 IAIIHGRMSDID---KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 I I+HGRM+ K++VM F G +L+ATTVIEVG++V +A+ ++I +A+ FG++ Sbjct: 584 IGILHGRMAPDGPDGKDAVMRRFAAGELDVLVATTVIEVGVNVPNATAMVIMDADRFGVS 643 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634 QLHQLRGRVGRG C+L+ P + + RL + T DGF ++ DL+QR+EG++L Sbjct: 644 QLHQLRGRVGRGSAPGLCLLVTDMPEASPARARLGAVAATLDGFELSRVDLEQRREGDVL 703 Query: 635 GIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTS 675 G QSG+ L + D ++ AR++A ++ DP L + Sbjct: 704 GQAQSGVRSSLRMLAVIEDEQIIAEAREEATAVVAADPALEA 745 >gi|225351188|ref|ZP_03742211.1| hypothetical protein BIFPSEUDO_02778 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158644|gb|EEG71886.1| hypothetical protein BIFPSEUDO_02778 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 896 Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 147/377 (38%), Positives = 209/377 (55%), Gaps = 48/377 (12%) Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404 T++ +I V ++TG+M A RR+ L A G I++ THA F S Q L L ++DEQH Sbjct: 496 TKDGEIPVFLLTGSMRLAERRRVLAAAASGMPCIVVATHAAFSKSFQAPNLTLAVIDEQH 555 Query: 405 RFGVQQRLKLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463 RFGV+QR L K +TAPH+L+MTATPIPRT +T GD+DIS +TE P GRKPI+T ++ Sbjct: 556 RFGVEQRESLNSKGSTAPHLLVMTATPIPRTAAMTWFGDLDISSLTELPGGRKPIRTFVV 615 Query: 464 PINR---IDEVIERLKVVLSEGKKAYWICPQIE--------------------------- 493 P + + E+ ++ + G++AY +CP+I+ Sbjct: 616 PEDNASLMGEMFALIRKRIDAGERAYVVCPRIDADAEDADGALAASAASGSETAGSSAAA 675 Query: 494 -----EKKESNFR-----------SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537 + E + R +VER SL + A + GR D K VM F Sbjct: 676 FDDAYDLGEDDDRRAQRPPLHSVAEIVERLQSLPQFKGIRFATLTGRDDDTTKSQVMADF 735 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 ++G +L+ATTVIEVG+DV AS I+I +A+ +GL+QLHQLRGRVGRG S L+ Sbjct: 736 ESGITPILVATTVIEVGVDVAKASCIVIFDADRYGLSQLHQLRGRVGRGGTDSGAFLISR 795 Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLL 656 P ++ RL V++ T DG IA+ DL+ R G++LG QSG L + D ++ Sbjct: 796 APADSDAARRLDVIQGTLDGAEIAQADLEFRGAGDVLGDAQSGGKSGLKLLRVVKDVKII 855 Query: 657 EIARKDAKHILTQDPDL 673 E AR +A ++ QDPDL Sbjct: 856 EHARVEATRLVAQDPDL 872 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 62/158 (39%), Positives = 91/158 (57%), Gaps = 4/158 (2%) Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 +P+ I +D ++ AEAF IH+P K+F+ A + L Y+E L Q AL+ Sbjct: 259 AIPDIIPEDFREEYGLMHRAEAFMAIHDPVDRKNFD---NALQTLRYEEALICQTALVKS 315 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 R +K E ++ + ++PF+ T Q+ I DI DM+ M R+LQG+VG Sbjct: 316 RDASRKSKATACP-ETRLKDDFIASLPFALTNGQQQVIADISADMAHDYPMQRLLQGEVG 374 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341 SGKT+VA+ AM AV +GGQAV++AP +LA+QHY I Sbjct: 375 SGKTVVAVAAMMQAVGSGGQAVLVAPTQVLAEQHYASI 412 >gi|206900533|ref|YP_002251220.1| transcription-repair coupling factor [Dictyoglomus thermophilum H-6-12] gi|206739636|gb|ACI18694.1| transcription-repair coupling factor [Dictyoglomus thermophilum H-6-12] Length = 1070 Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 156/414 (37%), Positives = 235/414 (56%), Gaps = 17/414 (4%) Query: 235 AGQIALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292 A +IA L++ ++E+ G + + + +++ + P+ T+ Q A+K+I +DM K Sbjct: 511 AKEIAEELLKVYAQRELTEGFAFSPDSPLQEELEASFPYVETEDQIKALKEIKRDMESKK 570 Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352 M R+L GDVG GKT +AL A AV G Q I+ P ILA QH++ ++ + + V Sbjct: 571 PMERVLIGDVGFGKTELALRASFKAVLDGKQVAILVPTTILAYQHWKVFRERLEVFPVNV 630 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 EI++ P++ +++ +ERI G+ IIIGTH + Q +++ L L+IVDE+HRFGV Q+ Sbjct: 631 EILSRLKPKSEQKRIIERIRKGEIDIIIGTHRILQKDVEFKDLGLIIVDEEHRFGVLQKE 690 Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 +K +L ++ATPIPRTL + G S + P R PI+T ++ N E+I Sbjct: 691 SFKKKYPHVDILYLSATPIPRTLSMVLSGIRQFSVLETPPENRLPIQTFVVEYN--PEII 748 Query: 473 -ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531 E ++ L G + Y++C IE + E L T SIA HG+M D + Sbjct: 749 QEGIRRELERGGQVYYVCNDIE-----RLEKIKEELTKLVPEATYSIA--HGKMDDEELT 801 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 VM +F +G +LIATT+IE GIDV +A+ + +ENAEH GLAQL+QLRGR+GR + + Sbjct: 802 EVMSNFYDGKIDVLIATTIIESGIDVPNANTLFVENAEHMGLAQLYQLRGRIGRSYKQAY 861 Query: 592 CILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640 L+ P LS +S RL LK G +A DL+ R G+ILG +Q G Sbjct: 862 AYFLHAPLKKLSLDSIKRLEALKEFSSLGSGLRLALRDLEIRGAGKILGKEQHG 915 >gi|126664951|ref|ZP_01735934.1| transcription-repair coupling protein Mfd [Marinobacter sp. ELB17] gi|126630321|gb|EBA00936.1| transcription-repair coupling protein Mfd [Marinobacter sp. ELB17] Length = 1169 Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 156/432 (36%), Positives = 244/432 (56%), Gaps = 27/432 (6%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W + ++ L A ++ + R++ +K G + + + PF T QE Sbjct: 567 WNTAKKKALEKIRDTAAELLDVYARREARK--GFSFDNPQEAYRTFAAGFPFEETPDQEV 624 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI+ +L+DM+ + M R++ GDVG GKT VA+ A A +G Q ++ P +LAQQHYE Sbjct: 625 AIQAVLEDMTSERPMDRLVCGDVGFGKTEVAMRAAFVATWSGKQVAVLVPTTLLAQQHYE 684 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 + +T + +E+++ + KALE + +G+A I+IGTH L Q +I++ L LVI Sbjct: 685 SFRDRFSDTAVNIELLSRFRSGSQTNKALEAMENGKADIVIGTHKLLQGNIRFKNLGLVI 744 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI-DISKITEKPAGRKPI 458 +DE+HRFGVQQ+ KL +L +TATPIPRTL + ++G + D+S I PA R + Sbjct: 745 IDEEHRFGVQQKEKLKALRAEVDMLNLTATPIPRTLNM-AMGHLRDLSIIATPPARRLSV 803 Query: 459 KTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEH 513 KT + + DE + + + +L E G + Y++ + EK ++ R ++ Sbjct: 804 KTF---VRQRDEPMVK-EAILREILRGGQVYFLHNNVTSIEKTAADLRQLIPE------- 852 Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 + + + HG+M + D E +M F + +L+ TT+IE GIDV A+ IIIE A+ FGL Sbjct: 853 --ARVGVAHGQMRERDLEQIMTDFYHKRFNVLVCTTIIETGIDVPTANTIIIERADKFGL 910 Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628 AQLHQLRGRVGR + LL PP +S ++ RL + +D GF++A +DL+ R Sbjct: 911 AQLHQLRGRVGRSHHQAYAYLLTPPPKAISSDAKKRLEAISEAQDLGAGFMLATQDLEIR 970 Query: 629 KEGEILGIKQSG 640 GE+LG +QSG Sbjct: 971 GAGELLGEEQSG 982 >gi|85059053|ref|YP_454755.1| transcription-repair coupling factor [Sodalis glossinidius str. 'morsitans'] gi|84779573|dbj|BAE74350.1| transcription-repair coupling factor [Sodalis glossinidius str. 'morsitans'] Length = 1150 Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 149/388 (38%), Positives = 220/388 (56%), Gaps = 23/388 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q PF PT Q AI +L DM Q M R++ GDVG GKT VA+ A A+E Sbjct: 592 QLFCEGFPFEPTVDQSQAINAVLSDMCQPLSMDRLICGDVGFGKTEVAMRAAFLAIENHK 651 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQH++ + N + +E+I+ + + LE+ A G+ I+IGT Sbjct: 652 QVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMISRFRSARDQAQVLEQTAEGKVDILIGT 711 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q ++++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 712 HKLLQSDVKWHDLGLLIVDEEHRFGVRHKERIKAMRAGVDILTLTATPIPRTLNMAMSGM 771 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKE 497 D+S I PA R +KT + + D ++ R + +L E G + Y++ +E EK Sbjct: 772 RDLSIIATPPARRLTVKTF---VRQYDALVVR-EAILREVLRGGQVYYLYNDVENIEKAA 827 Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557 ++V + IAI HG++ + + E VM+ F + +L+ TT+IE GID+ Sbjct: 828 RCLETLVPE---------ARIAIGHGQLRERELERVMNDFHHQRFNVLVCTTIIETGIDI 878 Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE 615 +A+ IIIE A+HFGLAQLHQLRGRVGR + LL PP LS++++ RL + + E Sbjct: 879 ANANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKALSQDAHKRLEAIASLE 938 Query: 616 D---GFLIAEEDLKQRKEGEILGIKQSG 640 D GF +A DL+ R GE+LG QSG Sbjct: 939 DLGAGFALATHDLEIRGAGELLGEDQSG 966 >gi|115448235|ref|NP_001047897.1| Os02g0710800 [Oryza sativa Japonica Group] gi|41052646|dbj|BAD07494.1| ATP-dependent DNA helicase RECG-like [Oryza sativa Japonica Group] gi|41052862|dbj|BAD07776.1| ATP-dependent DNA helicase RECG-like [Oryza sativa Japonica Group] gi|113537428|dbj|BAF09811.1| Os02g0710800 [Oryza sativa Japonica Group] gi|215764974|dbj|BAG86671.1| unnamed protein product [Oryza sativa Japonica Group] Length = 410 Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 143/399 (35%), Positives = 224/399 (56%), Gaps = 36/399 (9%) Query: 318 VEAGGQAVIMAPIGILAQQHYE----FIKKYTQN-TQIIVEIITGNMPQAHRRKALERIA 372 + +G QA M P +LA QHYE ++K+ + + + ++TG+ R + Sbjct: 4 ISSGFQAAFMVPTEVLALQHYEHLTSLLEKFDGDECKPNIALLTGSTSTRESRIIRNGLK 63 Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-------------- 418 G+ ++IGTH+L D ++ L + ++DEQ RFGV QR + K Sbjct: 64 TGEIAMVIGTHSLIGDKTEFSALRISVIDEQQRFGVVQRGRFNSKLYTPSTKSSDDDTIS 123 Query: 419 ---------TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-- 467 APHVL M+ATPIPRTL L GD+ +++IT+ P GR+PI+T+ + N Sbjct: 124 DENSASEIFMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRQPIETLALEGNDAG 183 Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFTS-SIAIIHGRM 525 + V + + L +G K Y + P IEE ++ + F+S+ + F ++HGRM Sbjct: 184 FESVFQMMSDELVDGGKVYLVYPIIEESEQLPQLHAAKAEFDSIKQKFEGYPCGLLHGRM 243 Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585 +K+ + SF++G ++L++T VIE+G+DV DAS++++ NAE FG++QLHQLRGRVGR Sbjct: 244 RSDEKDGALSSFRSGETRILLSTQVIEIGVDVPDASMMVVMNAERFGMSQLHQLRGRVGR 303 Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKF 644 GE S C+ L P ++ RL VL+ + DGF +A DL R G++LG KQSG +P+F Sbjct: 304 GERKSRCVFLCSTP---SALPRLKVLEKSSDGFYLANADLLLRGPGDLLGKKQSGHLPEF 360 Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683 IA+ E+ S+L+ A A ++L DL G + + Sbjct: 361 PIARLEIDGSILQEAHLAALNVLGTSNDLAQFPGLKVEL 399 >gi|313889521|ref|ZP_07823167.1| transcription-repair coupling factor [Streptococcus pseudoporcinus SPIN 20026] gi|313122133|gb|EFR45226.1| transcription-repair coupling factor [Streptococcus pseudoporcinus SPIN 20026] Length = 1166 Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 187/547 (34%), Positives = 289/547 (52%), Gaps = 38/547 (6%) Query: 130 KKLKNRIIMVHPHYIFHNSQDVN-FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188 ++LKN +V Y+ HN + F IE + G+ D + I + R+ + E Sbjct: 480 ERLKNYNELVKGDYVVHNVHGIGRFLGIETIQ--IQGIHRD-YVTIQYQNSDRISLPVEQ 536 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248 IE L + S N +++ R K + S E +A D+LL L R Q K Sbjct: 537 IES-LSKYVSADGKEPKINKLNDGRFQKTKQKVSKQVEDIA-DDLLR----LYAERSQLK 590 Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 G + + ++ + PF T+ Q +I++I +DM + M R+L GDVG GKT Sbjct: 591 ---GFQFSPDDELQASFDNDFPFVETEDQLRSIQEIKKDMESQRPMDRLLVGDVGFGKTE 647 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VA+ A AV+ Q I+ P +LAQQHY+ ++ +N I V++++ + + +L Sbjct: 648 VAMRAAFKAVKDHKQVAILVPTTVLAQQHYDNFRERFENYPIKVDVLSRFRSKKEQNTSL 707 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428 E++A GQ IIIGTH L +Q+ L L+++DE+ RFGV+ + KL + VL +TA Sbjct: 708 EKLAKGQVDIIIGTHRLLSKDVQFSDLGLIVIDEEQRFGVKHKEKLKELKNKVDVLTLTA 767 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAY 486 TPIPRTL ++ LG D+S I P R P++T ++ N + E I R + G + + Sbjct: 768 TPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLETNPSLVREAILR---EMDRGGQVF 824 Query: 487 WICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544 ++ +++ +KK S + +V ++I +HG+MS+I E+ + F NG + Sbjct: 825 YVYNKVDTIDKKVSQLQELVPE---------AAIGFVHGQMSEIQLENTLIDFINGDYDV 875 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSK 602 L+ATT+IE G+D+ + + + +ENA+H GL+ L+QLRGRVGR I+ L+Y P LS+ Sbjct: 876 LVATTIIETGVDISNVNTLFVENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKVLSE 935 Query: 603 NSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE-- 657 S RL +K TE GF IA DL R G ILG QSG + E++ LLE Sbjct: 936 ISDKRLEAIKGFTELGSGFKIAMRDLAIRGAGNILGASQSGFIDSV--GFEMYSQLLEEA 993 Query: 658 IARKDAK 664 IA K K Sbjct: 994 IANKQGK 1000 >gi|307106672|gb|EFN54917.1| hypothetical protein CHLNCDRAFT_134628 [Chlorella variabilis] Length = 786 Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 184/494 (37%), Positives = 256/494 (51%), Gaps = 75/494 (15%) Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 LP W+ + + P A +H P+ A E R+RLA+ ELLA Q+ LLLMR Sbjct: 334 LPSWMREQYQLQPLLP----ALRSVHQPKNAVLLE---EGRQRLAFQELLALQLKLLLMR 386 Query: 245 KQ-FKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 + G + V + K+ Q L +PF T Q+ A+ +IL M M +LQG+V Sbjct: 387 SMAWAGTGGGGVEVSDSKLLQLALEALPFEMTNGQQVALDNILGQMEGWPPMQCLLQGEV 446 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE---IITGNM 359 G GKT+VA +A+ AAV +G Q IMAP ILA+QHY ++ Q+ I+TG++ Sbjct: 447 GCGKTIVACLALLAAVGSGYQGAIMAPTEILAEQHYRNLQALVQDINRKAGKDGIVTGSV 506 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R + E +A G I +GTHAL DS + +L L IVDEQH+FGV+QR +L KA+ Sbjct: 507 RGKPRAQVDEGLASGNIDIAVGTHALISDSTHFQRLGLAIVDEQHKFGVEQRGRLLAKAS 566 Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 PHVL MTATPIPRT L G++ I + PAGR P+ T ++ D+ ER + Sbjct: 567 PVPHVLHMTATPIPRTQALIDHGNMTQVLIQQLPAGRTPVLTRMLQ----DDSPERQQ-- 620 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 +E K A S +VE H+ ++HG+M K++V+ FK Sbjct: 621 -AEVKAAA-----------SELDRLVEEGVFAHQ----DCGLLHGQMPPDQKDAVLQQFK 664 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G K+L++TTV+EVG+DV A++++IE+AE FG AQLHQLRGRV Sbjct: 665 QGAIKVLVSTTVVEVGVDVPQATVMVIEHAERFGFAQLHQLRGRV--------------- 709 Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658 L N +GF +AE DL+ R GE +AQ LLE Sbjct: 710 ------------LVNCNNGFAVAECDLELRGAGE-------------VAQIPADRELLEQ 744 Query: 659 ARKDAKHILTQDPD 672 AR+ A +L + PD Sbjct: 745 ARQAAIDLLQRQPD 758 >gi|319896952|ref|YP_004135147.1| transcription-repair coupling factor [Haemophilus influenzae F3031] gi|317432456|emb|CBY80811.1| transcription-repair coupling factor [Haemophilus influenzae F3031] Length = 1146 Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 153/409 (37%), Positives = 232/409 (56%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + + G + + Q+ PF T QE AI ++ DM Q M R++ Sbjct: 570 LLDVYAQREAKKGFAFKYDREEFQQFAATFPFEETYDQEMAINAVISDMCQPKAMDRLVC 629 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQHYE K N + VE+++ Sbjct: 630 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFK 689 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +++ LE +A G+ I+IGTH L Q +++ L L+I+DE+HRFGV Q+ K+ Q Sbjct: 690 TAKEQKQILENLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRA 749 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I+ PA R IKT + + D+++ R + +L Sbjct: 750 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTF---VRQNDDLVVR-EAIL 805 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ + ++ + E+ +L + + + HG+M + + E VM Sbjct: 806 REILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVIVGHGQMRERELERVMSD 858 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ +T+IE GIDV A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 859 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 918 Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 PP ++K++ RL L+N ++ GF++A DL+ R GE+LG +QSG Sbjct: 919 PPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG 967 >gi|301169996|emb|CBW29600.1| transcription-repair coupling factor [Haemophilus influenzae 10810] Length = 1146 Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 153/409 (37%), Positives = 232/409 (56%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + + G + + Q+ PF T QE AI ++ DM Q M R++ Sbjct: 570 LLDVYAQREAKKGFAFKYDREEFQQFAATFPFEETYDQEMAINAVISDMCQPKAMDRLVC 629 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQHYE K N + VE+++ Sbjct: 630 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFK 689 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +++ LE +A G+ I+IGTH L Q +++ L L+I+DE+HRFGV Q+ K+ Q Sbjct: 690 TAKEQKQILENLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRA 749 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I+ PA R IKT + + D+++ R + +L Sbjct: 750 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTF---VRQNDDLVVR-EAIL 805 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ + ++ + E+ +L + + + HG+M + + E VM Sbjct: 806 REILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVIVGHGQMRERELERVMSD 858 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ +T+IE GIDV A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 859 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 918 Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 PP ++K++ RL L+N ++ GF++A DL+ R GE+LG +QSG Sbjct: 919 PPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG 967 >gi|145642248|ref|ZP_01797814.1| transcription-repair coupling factor [Haemophilus influenzae R3021] gi|145273053|gb|EDK12933.1| transcription-repair coupling factor [Haemophilus influenzae 22.4-21] Length = 1160 Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 153/409 (37%), Positives = 232/409 (56%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + + G + + Q+ PF T QE AI ++ DM Q M R++ Sbjct: 584 LLDVYAQREAKKGFAFKYDREEFQQFAATFPFEETYDQEMAINAVISDMCQPKAMDRLVC 643 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQHYE K N + VE+++ Sbjct: 644 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFK 703 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +++ LE +A G+ I+IGTH L Q +++ L L+I+DE+HRFGV Q+ K+ Q Sbjct: 704 TAKEQKQILENLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRA 763 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I+ PA R IKT + + D+++ R + +L Sbjct: 764 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTF---VRQNDDLVVR-EAIL 819 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ + ++ + E+ +L + + + HG+M + + E VM Sbjct: 820 REILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVIVGHGQMRERELERVMSD 872 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ +T+IE GIDV A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 873 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 932 Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 PP ++K++ RL L+N ++ GF++A DL+ R GE+LG +QSG Sbjct: 933 PPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG 981 >gi|309805485|ref|ZP_07699530.1| helicase C-terminal domain protein [Lactobacillus iners LactinV 09V1-c] gi|308165136|gb|EFO67374.1| helicase C-terminal domain protein [Lactobacillus iners LactinV 09V1-c] Length = 328 Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 127/330 (38%), Positives = 208/330 (63%), Gaps = 5/330 (1%) Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 ++K + G +++IGTHA+ QD + + KL LVI+DEQHRFGV QR +L K + Sbjct: 3 KKKIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQLLNKGKMVDI 62 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 L M+ATPIPRTL L+ G+ +S+I + P GRK + + I + + +++ + L +G Sbjct: 63 LAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLTLMNEQLEQGF 122 Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTC 542 + Y + P I E + + ++ + + +F S +A++HG+M+ K +MD+F NG+ Sbjct: 123 QIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMASSQKSDIMDAFINGSI 182 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602 K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG S CI + P + Sbjct: 183 KILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGTTQSYCIFVSDPK-TD 241 Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662 ++ RL ++ +DGF +A EDLK R EG++ G QSG+P+F + + ++ A+K+ Sbjct: 242 SAKKRLKIISTCDDGFALAREDLKLRGEGDLFGQAQSGIPQFKLGDVINNYNIFTTAQKE 301 Query: 663 AKHILTQDPDLTSVRGQSIRILLYLYQYNE 692 +K ++ Q+P+L G+ L L +Y++ Sbjct: 302 SKILVHQNPELV---GEEYDFLKLLMEYDD 328 >gi|294668401|ref|ZP_06733504.1| hypothetical protein NEIELOOT_00319 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309719|gb|EFE50962.1| hypothetical protein NEIELOOT_00319 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 295 Score = 247 bits (630), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 129/278 (46%), Positives = 174/278 (62%), Gaps = 1/278 (0%) Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +IVDEQHRFGV QRL L K H L+M+ATPIPRTL ++ D+D+S I E P GR P Sbjct: 1 MIVDEQHRFGVAQRLALKNKGRDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTP 60 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516 IKT ++ R EV + + +G++AYW+CP IEE + ++ E L Sbjct: 61 IKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIEESETLQLQTATETLEQLQAALPEL 120 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 +I ++HGRM +K VM F G +L+ATTVIEVG+DV +A++++IE+AE GLAQL Sbjct: 121 NIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVPNAALMVIEHAERMGLAQL 180 Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636 HQLRGRVGRG S C+LL+ PLS+ + RL V+ DGF IA +DL R GE LG Sbjct: 181 HQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGA 240 Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 +QSG+P A E LLE AR+ A ++ Q+P++ Sbjct: 241 RQSGVPMLRFANLEEDLYLLEQAREIAPMLIEQNPEIV 278 >gi|237808985|ref|YP_002893425.1| transcription-repair coupling factor [Tolumonas auensis DSM 9187] gi|237501246|gb|ACQ93839.1| transcription-repair coupling factor [Tolumonas auensis DSM 9187] Length = 1150 Score = 247 bits (630), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 152/397 (38%), Positives = 224/397 (56%), Gaps = 19/397 (4%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G+ + + K PF T Q +AI +L DM Q M R++ GDVG GKT VA+ Sbjct: 583 GLAFRHDKQAYSKFAAGFPFEETPDQLNAINSVLGDMCQAKAMDRLVCGDVGFGKTEVAM 642 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A AV AG Q ++ P +LAQQHYE + N + +E+++ ++ A+E + Sbjct: 643 RATFVAVHAGKQVAVLVPTTLLAQQHYENFRDRFANWPVNIEVMSRFKSAKEQKAAMEAL 702 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 A G+ IIIGTH L + I++ L L++VDE+HRFGV+Q+ K+ +L +TATPI Sbjct: 703 AEGKIDIIIGTHKLLSEDIRFKDLGLLVVDEEHRFGVRQKEKIKALRADVDILTLTATPI 762 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWIC 489 PRTL + G D+S I PA R IKT + + D+ + R ++ L G + Y++ Sbjct: 763 PRTLNMALSGMRDLSVIATPPAKRLAIKTF---VRQYDKAVVREAILRELKRGGQVYYL- 818 Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548 +N ++ + L E + IAI HG+M + D E VM F + LL+ T Sbjct: 819 -------HNNVETIDQTAALLSELIPEARIAIAHGQMRERDLERVMTDFYHQRYNLLVCT 871 Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYT 606 T+IE GIDV A+ II++ A++ GLAQLHQLRGRVGR + LL HP ++K++ Sbjct: 872 TIIETGIDVPSANTIIMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKQMTKDAVK 931 Query: 607 RLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 RL +++ ED GF++A DL+ R GE+LG +QSG Sbjct: 932 RLEAIESLEDLGAGFVLATHDLEIRGAGELLGDEQSG 968 >gi|229846840|ref|ZP_04466947.1| transcription-repair coupling factor [Haemophilus influenzae 7P49H1] gi|229810329|gb|EEP46048.1| transcription-repair coupling factor [Haemophilus influenzae 7P49H1] Length = 1146 Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 153/409 (37%), Positives = 232/409 (56%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + + G + + Q+ PF T QE AI ++ DM Q M R++ Sbjct: 570 LLDVYAQREAKKGFAFKYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKAMDRLVC 629 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQHYE K N + VE+++ Sbjct: 630 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFK 689 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +++ LE +A G+ I+IGTH L Q +++ L L+I+DE+HRFGV Q+ K+ Q Sbjct: 690 TAKEQKQILENLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRA 749 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I+ PA R IKT + + D+++ R + +L Sbjct: 750 NIDILTLTATPIPRTLNMAMNGISDLSIISTPPARRLSIKTF---VRQNDDLVVR-EAIL 805 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ + ++ + E+ +L + + + HG+M + + E VM Sbjct: 806 REILRGGQVYYLHNDV-----ASIENTAEKLTTLVPE--ARVIVGHGQMRERELERVMSD 858 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ +T+IE GIDV A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 859 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 918 Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 PP ++K++ RL L+N ++ GF++A DL+ R GE+LG +QSG Sbjct: 919 PPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG 967 >gi|260582935|ref|ZP_05850719.1| transcription-repair coupling factor [Haemophilus influenzae NT127] gi|260094035|gb|EEW77939.1| transcription-repair coupling factor [Haemophilus influenzae NT127] Length = 1146 Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 153/409 (37%), Positives = 232/409 (56%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + + G + + Q+ PF T QE AI ++ DM Q M R++ Sbjct: 570 LLDVYAQREAKKGFAFKYDREEFQQFAATFPFEETYDQEMAINAVISDMCQPKAMDRLVC 629 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQHYE K N + VE+++ Sbjct: 630 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFK 689 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +++ LE +A G+ I+IGTH L Q +++ L L+I+DE+HRFGV Q+ K+ Q Sbjct: 690 TAKEQKQILENLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRA 749 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I+ PA R IKT + + D+++ R + +L Sbjct: 750 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTF---VRQNDDLVVR-EAIL 805 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ + ++ + E+ +L + + + HG+M + + E VM Sbjct: 806 REILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVIVGHGQMRERELERVMSD 858 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ +T+IE GIDV A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 859 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 918 Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 PP ++K++ RL L+N ++ GF++A DL+ R GE+LG +QSG Sbjct: 919 PPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG 967 >gi|148827037|ref|YP_001291790.1| transcription-repair coupling factor [Haemophilus influenzae PittGG] gi|148718279|gb|ABQ99406.1| transcription-repair coupling factor [Haemophilus influenzae PittGG] Length = 1146 Score = 246 bits (629), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 153/409 (37%), Positives = 232/409 (56%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + + G + + Q+ PF T QE AI ++ DM Q M R++ Sbjct: 570 LLDVYAQREAKKGFAFKYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKAMDRLVC 629 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQHYE K N + VE+++ Sbjct: 630 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFK 689 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +++ LE +A G+ I+IGTH L Q +++ L L+I+DE+HRFGV Q+ K+ Q Sbjct: 690 TAKEQKQILENLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRA 749 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I+ PA R IKT + + D+++ R + +L Sbjct: 750 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTF---VRQNDDLVVR-EAIL 805 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ + ++ + E+ +L + + + HG+M + + E VM Sbjct: 806 REILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVIVGHGQMRERELERVMSD 858 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ +T+IE GIDV A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 859 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 918 Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 PP ++K++ RL L+N ++ GF++A DL+ R GE+LG +QSG Sbjct: 919 PPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG 967 >gi|332522484|ref|ZP_08398736.1| transcription-repair coupling factor [Streptococcus porcinus str. Jelinkova 176] gi|332313748|gb|EGJ26733.1| transcription-repair coupling factor [Streptococcus porcinus str. Jelinkova 176] Length = 1166 Score = 246 bits (629), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 178/522 (34%), Positives = 280/522 (53%), Gaps = 34/522 (6%) Query: 130 KKLKNRIIMVHPHYIFHNSQDVN-FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188 ++LKN +V Y+ HN + F IE + G+ D + I + R+ + E Sbjct: 480 ERLKNYNELVKGDYVVHNVHGIGRFLGIETIK--LQGIHRD-YVTIQYQNSDRISLPVEQ 536 Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248 IE L + S N +++ R K + S E +A D+LL L R Q K Sbjct: 537 IES-LSKYVSADGKEPKINKLNDGRFQKTKQKVSKQVEDIA-DDLLR----LYAERSQLK 590 Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 G + + ++ + + PF T+ Q +I++I +DM + M R+L GDVG GKT Sbjct: 591 ---GFQFSPDDELQESFDNDFPFVETEDQLRSIQEIKKDMESQLPMDRLLVGDVGFGKTE 647 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VA+ A AV+ Q I+ P +LAQQHY+ ++ +N + V++++ + + +L Sbjct: 648 VAMRAAFKAVKDHKQVAILVPTTVLAQQHYDNFRERFENYPVEVDVLSRFRSKKEQNTSL 707 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428 E++A GQ IIIGTH L +Q+ L L+++DE+ RFGV+ + KL + + VL +TA Sbjct: 708 EKLAKGQVDIIIGTHRLLSKDVQFSDLGLIVIDEEQRFGVKHKEKLKELKSKVDVLTLTA 767 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAY 486 TPIPRTL ++ LG D+S I P R P++T ++ N + E I R + G + + Sbjct: 768 TPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLETNPSLVREAILR---EMDRGGQVF 824 Query: 487 WICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544 ++ +++ +KK S + +V ++I +HG+MS+I E+ + F NG + Sbjct: 825 YVYNKVDTIDKKVSQLQELVPE---------AAIGFVHGQMSEIQLENTLIDFINGDYDV 875 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSK 602 L+ATT+IE G+D+ + + + +ENA+H GL+ L+QLRGRVGR I+ L+Y P LS+ Sbjct: 876 LVATTIIETGVDISNVNTLFVENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKILSE 935 Query: 603 NSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGM 641 S RL +K TE GF IA DL R G ILG QSG Sbjct: 936 ISEKRLEAIKGFTELGSGFKIAMRDLAIRGAGNILGASQSGF 977 >gi|16273176|ref|NP_439413.1| transcription-repair coupling factor [Haemophilus influenzae Rd KW20] gi|260581174|ref|ZP_05848994.1| transcription-repair coupling factor [Haemophilus influenzae RdAW] gi|1170943|sp|P45128|MFD_HAEIN RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|1574188|gb|AAC22905.1| transcription-repair coupling factor (mfd) [Haemophilus influenzae Rd KW20] gi|260092202|gb|EEW76145.1| transcription-repair coupling factor [Haemophilus influenzae RdAW] Length = 1146 Score = 246 bits (629), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 153/409 (37%), Positives = 232/409 (56%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + + G + + Q+ PF T QE AI ++ DM Q M R++ Sbjct: 570 LLDVYAQREAKKGFAFKYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKAMDRLVC 629 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQHYE K N + VE+++ Sbjct: 630 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFK 689 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +++ LE +A G+ I+IGTH L Q +++ L L+I+DE+HRFGV Q+ K+ Q Sbjct: 690 TAKEQKQILENLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRA 749 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I+ PA R IKT + + D+++ R + +L Sbjct: 750 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTF---VRQNDDLVVR-EAIL 805 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ + ++ + E+ +L + + + HG+M + + E VM Sbjct: 806 REILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVIVGHGQMRERELERVMSD 858 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ +T+IE GIDV A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 859 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 918 Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 PP ++K++ RL L+N ++ GF++A DL+ R GE+LG +QSG Sbjct: 919 PPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG 967 >gi|319776143|ref|YP_004138631.1| transcription-repair coupling factor [Haemophilus influenzae F3047] gi|317450734|emb|CBY86954.1| transcription-repair coupling factor [Haemophilus influenzae F3047] Length = 1146 Score = 246 bits (629), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 153/409 (37%), Positives = 232/409 (56%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + + G + + Q+ PF T QE AI ++ DM Q M R++ Sbjct: 570 LLDVYAQREAKKGFAFKYDREEFQQFAATFPFEETYDQEMAINAVISDMCQPKAMDRLVC 629 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQHYE K N + VE+++ Sbjct: 630 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFK 689 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +++ LE +A G+ I+IGTH L Q +++ L L+I+DE+HRFGV Q+ K+ Q Sbjct: 690 TAKEQKQILENLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRA 749 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I+ PA R IKT + + D+++ R + +L Sbjct: 750 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTF---VRQNDDLVVR-EAIL 805 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ + ++ + E+ +L + + + HG+M + + E VM Sbjct: 806 REILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVIVGHGQMRERELERVMSD 858 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ +T+IE GIDV A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 859 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 918 Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 PP ++K++ RL L+N ++ GF++A DL+ R GE+LG +QSG Sbjct: 919 PPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG 967 >gi|148825849|ref|YP_001290602.1| transcription-repair coupling factor [Haemophilus influenzae PittEE] gi|148716009|gb|ABQ98219.1| transcription-repair coupling factor [Haemophilus influenzae PittEE] Length = 1146 Score = 246 bits (629), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 153/409 (37%), Positives = 232/409 (56%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + + G + + Q+ PF T QE AI ++ DM Q M R++ Sbjct: 570 LLDVYAQREAKKGFAFKYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKAMDRLVC 629 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQHYE K N + VE+++ Sbjct: 630 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFK 689 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +++ LE +A G+ I+IGTH L Q +++ L L+I+DE+HRFGV Q+ K+ Q Sbjct: 690 TAKEQKQILENLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRA 749 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I+ PA R IKT + + D+++ R + +L Sbjct: 750 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTF---VRQNDDLVVR-EAIL 805 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ + ++ + E+ +L + + + HG+M + + E VM Sbjct: 806 REILRGGQVYYLHNDV-----ASIENTAEKLTTLVPE--ARVIVGHGQMRERELERVMSD 858 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ +T+IE GIDV A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 859 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 918 Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 PP ++K++ RL L+N ++ GF++A DL+ R GE+LG +QSG Sbjct: 919 PPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG 967 >gi|145638829|ref|ZP_01794437.1| transcription-repair coupling factor [Haemophilus influenzae PittII] gi|145271801|gb|EDK11710.1| transcription-repair coupling factor [Haemophilus influenzae PittII] gi|309750812|gb|ADO80796.1| Transcription-repair coupling factor [Haemophilus influenzae R2866] Length = 1146 Score = 246 bits (629), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 153/409 (37%), Positives = 232/409 (56%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + + G + + Q+ PF T QE AI ++ DM Q M R++ Sbjct: 570 LLDVYAQREAKKGFAFKYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKAMDRLVC 629 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQHYE K N + VE+++ Sbjct: 630 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFK 689 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +++ LE +A G+ I+IGTH L Q +++ L L+I+DE+HRFGV Q+ K+ Q Sbjct: 690 TAKEQKQILENLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRA 749 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I+ PA R IKT + + D+++ R + +L Sbjct: 750 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTF---VRQNDDLVVR-EAIL 805 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ + ++ + E+ +L + + + HG+M + + E VM Sbjct: 806 REILRGGQVYYLHNDV-----ASIENTAEKLTTLVPE--ARVIVGHGQMRERELERVMSD 858 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ +T+IE GIDV A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 859 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 918 Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 PP ++K++ RL L+N ++ GF++A DL+ R GE+LG +QSG Sbjct: 919 PPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG 967 >gi|224282408|ref|ZP_03645730.1| ATP-dependent DNA helicase [Bifidobacterium bifidum NCIMB 41171] gi|313139552|ref|ZP_07801745.1| ATP-dependent DNA helicase [Bifidobacterium bifidum NCIMB 41171] gi|313132062|gb|EFR49679.1| ATP-dependent DNA helicase [Bifidobacterium bifidum NCIMB 41171] Length = 894 Score = 246 bits (628), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 198/615 (32%), Positives = 286/615 (46%), Gaps = 133/615 (21%) Query: 184 VLPEWIEKD--LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 VLPE + + LL + AEAF IH+P DF+ A + Y+E Q ALL Sbjct: 268 VLPESVRESNHLLHR------AEAFLAIHDPLNTADFKR---AIGTMRYEEAFVSQTALL 318 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 R +K+ +P + + + ++PF T Q I DI DM+++ M R+LQG+ Sbjct: 319 QSRSNVRKDAALPC-AGVALRDRFIESLPFPLTGGQREIIDDIGVDMAREYPMQRLLQGE 377 Query: 302 V----------------GSG-----------------KTLVALIAMAAAVEAG------- 321 V GSG T+ A++ +VE G Sbjct: 378 VGSGKTVVAVAAMLQAAGSGHQAVLVAPTQVLAEQHHATISAMLCAIDSVETGDDPSRDA 437 Query: 322 -----------------------GQAVIMAPI----GILAQQHYEFIKKYTQNTQ-IIVE 353 G+A + P+ +Q + NT+ + V Sbjct: 438 LSPNDPADLIKAAESAADDGDAKGRAAVKHPVKHSGARSGKQDGAAHAQSDANTRHVPVI 497 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++TG M A RR+AL A G II+ THA F + Q L LV++DEQHRFGV+QR Sbjct: 498 LLTGGMKLAARRRALALAASGDPCIIVATHAAFSKTFQAPNLALVVIDEQHRFGVEQRES 557 Query: 414 L-TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---ID 469 L T+ PH+L+MTATPIPRT +T GD+DIS +TE P GRKPI+T I+P + + Sbjct: 558 LRTKNDVVPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRTFIVPEDDGRMMG 617 Query: 470 EVIERLKVVLSEGKKAYWICPQIEE-------------------------KKESN----- 499 + ++ + G++AY +CP+I+ ++ES Sbjct: 618 SMFAHIRGRIDAGERAYVVCPRIDADDESDGDDDTSGASQIGVYDDSDTYRRESANTTTS 677 Query: 500 ---------------FRSVVE---RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541 SV E R +SL + A + GR D K+ VM F +G Sbjct: 678 APSQEDGDGAPSRPPLHSVAEIERRLSSLPQFRGIRFATLTGRDDDATKQQVMADFADGA 737 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L+ATTVIEVG+DV AS I+I +A+ +GL+QLHQLRGRVGRG S L+ Sbjct: 738 TPVLVATTVIEVGVDVPQASCIVIFDADRYGLSQLHQLRGRVGRGGTDSWAFLISRAEDG 797 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIAR 660 + RL V++ T DG IA+ DL+ R G++LG QSG L + D+ ++ AR Sbjct: 798 GPAQQRLQVIQGTLDGAQIAQADLEFRGAGDVLGDAQSGGKSGLKLLRVVKDAKIIADAR 857 Query: 661 KDAKHILTQDPDLTS 675 + A +L DPDL+ Sbjct: 858 ERAGRLLADDPDLSG 872 >gi|145634410|ref|ZP_01790120.1| transcription-repair coupling factor [Haemophilus influenzae PittAA] gi|145268390|gb|EDK08384.1| transcription-repair coupling factor [Haemophilus influenzae PittAA] Length = 1146 Score = 246 bits (628), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 153/409 (37%), Positives = 232/409 (56%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + + G + + Q+ PF T QE AI ++ DM Q M R++ Sbjct: 570 LLDVYAQREAKKGFAFKYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKAMDRLVC 629 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQHYE K N + VE+++ Sbjct: 630 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFK 689 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +++ LE +A G+ I+IGTH L Q +++ L L+I+DE+HRFGV Q+ K+ Q Sbjct: 690 TAKEQKQILESLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRA 749 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I+ PA R IKT + + D+++ R + +L Sbjct: 750 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTF---VRQNDDLVVR-EAIL 805 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ + ++ + E+ +L + + + HG+M + + E VM Sbjct: 806 REILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVIVGHGQMRERELERVMSD 858 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ +T+IE GIDV A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 859 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYTYLLT 918 Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 PP ++K++ RL L+N ++ GF++A DL+ R GE+LG +QSG Sbjct: 919 PPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG 967 >gi|229845348|ref|ZP_04465480.1| transcription-repair coupling factor [Haemophilus influenzae 6P18H1] gi|229811801|gb|EEP47498.1| transcription-repair coupling factor [Haemophilus influenzae 6P18H1] Length = 1146 Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 153/409 (37%), Positives = 232/409 (56%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + + G + + Q+ PF T QE AI ++ DM Q M R++ Sbjct: 570 LLDVYAQREAKKGFAFKYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKAMDRLVC 629 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQHYE K N + VE+++ Sbjct: 630 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFK 689 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +++ LE +A G+ I+IGTH L Q +++ L L+I+DE+HRFGV Q+ K+ Q Sbjct: 690 TAKEQKQILESLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRA 749 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I+ PA R IKT + + D+++ R + +L Sbjct: 750 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTF---VRQNDDLVVR-EAIL 805 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ + ++ + E+ +L + + + HG+M + + E VM Sbjct: 806 REILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVIVGHGQMRERELERVMSD 858 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ +T+IE GIDV A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 859 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYTYLLT 918 Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 PP ++K++ RL L+N ++ GF++A DL+ R GE+LG +QSG Sbjct: 919 PPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG 967 >gi|260913085|ref|ZP_05919567.1| transcription-repair coupling factor [Pasteurella dagmatis ATCC 43325] gi|260632672|gb|EEX50841.1| transcription-repair coupling factor [Pasteurella dagmatis ATCC 43325] Length = 1145 Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 150/409 (36%), Positives = 234/409 (57%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + + G N + + Q+ PF T QE AI ++ DM Q M R++ Sbjct: 569 LLDVYAQREAQKGFAFNYDREEFQQFAATFPFEETIDQEMAINAVISDMCQPKAMDRLVC 628 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQHYE K N + VE+++ Sbjct: 629 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFK 688 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +++ ++ + G+ I+IGTH L Q +Q++ L L+I+DE+HRFGV+Q+ ++ Q Sbjct: 689 TTKEQKQVIQNLEEGKVDILIGTHKLIQSDVQFHDLGLLIIDEEHRFGVRQKERIKQLRA 748 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I+ PA R IKT + + D+++ R + +L Sbjct: 749 NIDILTLTATPIPRTLNMAMHGIRDLSIISTPPARRLTIKTF---VKQADDLVIR-EAIL 804 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ + ++ + E+ +L + I + HG+M + + E VM Sbjct: 805 REILRGGQVYYLHNDV-----ASIENCAEKLTALVPE--ARITVGHGQMRERELERVMSD 857 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ +T+IE GIDV A+ IIIE A++FGLAQLHQLRGRVGR + LL Sbjct: 858 FYHQRFNVLVCSTIIETGIDVPTANTIIIERADNFGLAQLHQLRGRVGRSHHQAYAYLLT 917 Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 PP ++K++ RL L++ ++ GF++A DL+ R GE+LG +QSG Sbjct: 918 PPPKTMTKDAQKRLEALESLDNLGAGFILATHDLEIRGAGELLGSEQSG 966 >gi|119484480|ref|ZP_01619097.1| Transcription-repair coupling factor [Lyngbya sp. PCC 8106] gi|119457954|gb|EAW39077.1| Transcription-repair coupling factor [Lyngbya sp. PCC 8106] Length = 1147 Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 149/416 (35%), Positives = 236/416 (56%), Gaps = 25/416 (6%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 + LL + Q ++ G ++ Q++ + P+ PT Q + +D+ +DM + M R+ Sbjct: 554 VDLLKLYAQRAQQTGYNYPIDTPWQQELEDSFPYQPTPDQLKSTQDVKRDMEAERPMDRL 613 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 + GDVG GKT V + A+ AV AG Q +AP IL QQHY +K+ I + ++ Sbjct: 614 VCGDVGFGKTEVGIRAIFKAVTAGKQVAFLAPTTILTQQHYHTLKERFAPYPIEIALLNR 673 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 + +R+ +R+ G+ II+GTH++ +IQ+ L L++VDE+ RFGV Q+ K+ Sbjct: 674 FRTTSEKREIQQRLTTGEIDIIVGTHSILSKTIQFKDLGLLVVDEEQRFGVNQKEKIKTL 733 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LK 476 T VL +TATPIPRTL + G ++S IT P R+PIKT + P N DE I ++ Sbjct: 734 KTHVDVLTLTATPIPRTLYMALSGIREMSLITTPPPSRRPIKTHLSPYN--DETIRTAIR 791 Query: 477 VVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534 L G + +++ P+IE E+K S R +V ++ IA+ HG+M+ + ES+M Sbjct: 792 QELDRGGQVFYVVPRIEGIEEKSSKIREMVP---------SARIAVAHGQMNAAELESIM 842 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 +F G ++L+ TT+IE G+D+ + I+IE+A FGLAQL+QLRGRVGR + + Sbjct: 843 LTFNAGEAEILVCTTIIESGLDIPRVNTILIEDAHRFGLAQLYQLRGRVGRS-GVQAHAW 901 Query: 595 LYHP-------PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSG 640 L++P LS ++ RL ++ G+ +A DL+ R G+ILG +QSG Sbjct: 902 LFYPVNADGRAALSDDARKRLRAIQEFTQLGSGYQLAMRDLEIRGAGDILGAEQSG 957 >gi|329123308|ref|ZP_08251874.1| transcription-repair coupling factor [Haemophilus aegyptius ATCC 11116] gi|327471404|gb|EGF16854.1| transcription-repair coupling factor [Haemophilus aegyptius ATCC 11116] Length = 1160 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 149/386 (38%), Positives = 222/386 (57%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ PF T QE AI ++ DM Q M R++ GDVG GKT VA+ A AV Sbjct: 607 QQFAATFPFEETYDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHK 666 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHYE K N + VE+++ +++ LE +A G+ I+IGT Sbjct: 667 QVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFKTAKEQKQILENLAEGKVDILIGT 726 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+I+DE+HRFGV Q+ K+ Q +L +TATPIPRTL + G Sbjct: 727 HKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGI 786 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I+ PA R IKT + + D+++ R + +L E G + Y++ + ++ Sbjct: 787 RDLSIISTPPARRLSIKTF---VRQNDDLVVR-EAILREILRGGQVYYLHNDV-----AS 837 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + E+ +L + + + HG+M + E VM F + +L+ +T+IE GIDV Sbjct: 838 IENTAEKLTALVPE--ARVIVGHGQMRERALERVMSDFYHQRYNVLVCSTIIETGIDVPT 895 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL PP ++K++ RL L+N ++ Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKMMTKDAERRLDALENLDNL 955 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF++A DL+ R GE+LG +QSG Sbjct: 956 GAGFILATHDLEIRGAGELLGNEQSG 981 >gi|226330514|ref|ZP_03806032.1| hypothetical protein PROPEN_04432 [Proteus penneri ATCC 35198] gi|225201309|gb|EEG83663.1| hypothetical protein PROPEN_04432 [Proteus penneri ATCC 35198] Length = 708 Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 155/409 (37%), Positives = 230/409 (56%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + + G ++ + Q ++ PF T QE AI +L DM Q M R++ Sbjct: 126 LLDVYAQREVKTGFAFKMDKEQYQTFRQSFPFETTPDQEMAINAVLSDMCQAISMDRLVC 185 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q I+ P +LAQQH++ + N + +E+I+ Sbjct: 186 GDVGFGKTEVAMRAAFLAVNNNKQVAILVPTTLLAQQHFDNFRDRFANWPVNIEMISRFR 245 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +++ E++A G I+IGTH L Q +IQ+ L L+IVDE+HRFGV+ + ++ Sbjct: 246 SAKEQQQITEKLAEGTIDIVIGTHKLLQPNIQWKDLGLLIVDEEHRFGVRHKERIKAMRA 305 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I PA R +KT + D+++ R + +L Sbjct: 306 NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLSVKTF---VREYDDLVVR-EAIL 361 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ +E N ER +L + I I HG+M + + E VM+ Sbjct: 362 RETLRGGQVYYLYNDVE-----NIEKARERLAALVPE--ARIGIGHGQMRERELERVMND 414 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ TT+IE GID+ A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 415 FHHQRFNVLLCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 474 Query: 597 -HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 HP ++K+++ RL + + ED GF +A DL+ R GE+LG +QSG Sbjct: 475 PHPKAMTKDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG 523 >gi|157375968|ref|YP_001474568.1| transcription-repair coupling factor [Shewanella sediminis HAW-EB3] gi|157318342|gb|ABV37440.1| transcription-repair coupling factor [Shewanella sediminis HAW-EB3] Length = 1157 Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 157/436 (36%), Positives = 238/436 (54%), Gaps = 17/436 (3%) Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270 N K + W R+ + +A ++ + R+Q + + +E + AQ + P Sbjct: 549 NLNKLGNETWAKAKRKAVEKIRDVAAELLDVYARRQARPGDACKV-IEEEYAQ-FANSFP 606 Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T QE++I ++ DM M R++ GDVG GKT VA+ A AV G Q I+ P Sbjct: 607 FEETVDQETSINAVMTDMCSPIAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVAILVPT 666 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LAQQHYE K + + +E+++ ++ +E +A+G+ I+IGTH L Q Sbjct: 667 TLLAQQHYENFKDRFADWPVKIEVMSRFKTAKEQKHVMEELANGKVDIVIGTHKLLQSDA 726 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L L+++DE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S I Sbjct: 727 KFENLGLLVIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT 786 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 PA R +KT I + VIE L+ + G + Y++ +N S+ +R + L Sbjct: 787 PPAKRLSVKTFIREYDDT-TVIEALQREILRGGQVYFL--------HNNVESIEKRASEL 837 Query: 511 HEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 E + + HG+M + + E VM F + +L+ TT+IE GIDV A+ IIIE A+ Sbjct: 838 SELLPEARVVTAHGQMRERELEKVMSDFYHQKFNVLVCTTIIETGIDVPSANTIIIERAD 897 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED---GFLIAEED 624 FGLAQLHQLRGRVGR + L+ HP ++K+S RL + ED GFL+A +D Sbjct: 898 KFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTKDSVKRLEAIGALEDLGAGFLLATQD 957 Query: 625 LKQRKEGEILGIKQSG 640 L+ R GE+LG +QSG Sbjct: 958 LEIRGAGELLGDEQSG 973 >gi|52424271|ref|YP_087408.1| Mfd protein [Mannheimia succiniciproducens MBEL55E] gi|52306323|gb|AAU36823.1| Mfd protein [Mannheimia succiniciproducens MBEL55E] Length = 1148 Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 158/424 (37%), Positives = 242/424 (57%), Gaps = 23/424 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T QE+AI ++ DM Q M R++ GDVG GKT VA+ A AV Q ++ P Sbjct: 602 PFEETHDQEAAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVP 661 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHYE + N + VE+++ ++K LE ++ G+ I+IGTH L Q Sbjct: 662 TTLLAQQHYENFRDRFANLPVNVEMVSRFRTAKEQKKILEDLSAGKVDILIGTHKLIQSD 721 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +++ L L+I+DE+HRFGV+Q+ K+ Q +L +TATPIPRTL + G D+S I+ Sbjct: 722 VKFNDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMAMNGIRDLSIIS 781 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 PA R IKT + + D+++ R + +L E G + Y++ + ++ + E+ Sbjct: 782 TPPARRLTIKTF---VRQADDLLIR-EAILREILRGGQVYYLHNDV-----ASIENCAEK 832 Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 +L + I I HG+M + + E VM F + +L+ +T+IE GID+ A+ IIIE Sbjct: 833 LTALVPE--ARIIIGHGQMHERELERVMTDFYHQRFNVLVCSTIIETGIDIPTANTIIIE 890 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIA 621 A+HFGLAQLHQLRGRVGR + LL PP ++K++ RL L++ ++ GF++A Sbjct: 891 RADHFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKLMTKDAVKRLEALESLDNLGAGFILA 950 Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681 DL+ R GE+LG +QSG + + L+ LLE A + K ++P L + Q + Sbjct: 951 THDLEIRGAGELLGSEQSGQIESIGFS--LYMELLEAAVQAMKQ--GREPSLDELTQQQV 1006 Query: 682 RILL 685 I L Sbjct: 1007 EIDL 1010 >gi|269139412|ref|YP_003296113.1| transcription-repair coupling factor (superfamily II helicase) [Edwardsiella tarda EIB202] gi|267985073|gb|ACY84902.1| transcription-repair coupling factor (superfamily II helicase) [Edwardsiella tarda EIB202] gi|304559308|gb|ADM41972.1| Transcription-repair coupling factor [Edwardsiella tarda FL6-60] Length = 1178 Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 149/386 (38%), Positives = 217/386 (56%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T QE AI +L DM Q M R++ GDVG GKT VA+ A AV +G Sbjct: 622 QLFCQGFPFETTADQEIAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVHSGK 681 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L A G+ I+IGT Sbjct: 682 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIELISRFRSAKEQAQVLADTADGKVDILIGT 741 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q+ +Q+ L L+IVDE+HRFGV+Q+ ++ +L +TATPIPRTL + G Sbjct: 742 HKLLQNDVQWSDLGLLIVDEEHRFGVRQKERIKAMRADVDILTLTATPIPRTLNMAMSGM 801 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ ++ Sbjct: 802 RDLSIIATPPARRMAVKTF---VREYDSLVVR-EAILRETLRGGQVYYLYNDVD-----T 852 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + +R +L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 853 IQKAADRLATLVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPS 910 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL PP ++ ++ RL + + ED Sbjct: 911 ANTIIIERADHFGLAQLHQLRGRVGRSYHQAYAYLLTPPPKAMTVDAQKRLEAIASLEDL 970 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 971 GAGFALATHDLEIRGAGELLGDDQSG 996 >gi|311695148|gb|ADP98021.1| transcription-repair-coupling factor [marine bacterium HP15] Length = 1177 Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 154/431 (35%), Positives = 239/431 (55%), Gaps = 25/431 (5%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W++ ++ L A ++ + R++ +K G + + PF T Q+ Sbjct: 575 WSTAKQKALEKIRDTAAELLDVYARREARK--GFSFEDPKEAYRAFAAGFPFEETPDQQV 632 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI+ + +DM+ + M R++ GDVG GKT VA+ A A +G Q ++ P +LAQQHYE Sbjct: 633 AIQSVFEDMTSEQPMDRLVCGDVGFGKTEVAMRAAFLATWSGKQVAVLVPTTLLAQQHYE 692 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 + +T + VE+++ KALE + +G+A I+IGTH L Q I++ L LVI Sbjct: 693 SFRDRFSDTPVQVELLSRFRTAGQTSKALEAVENGRADIVIGTHKLLQGDIKFKNLGLVI 752 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI-DISKITEKPAGRKPI 458 +DE+HRFGVQQ+ +L +L +TATPIPRTL + ++G + D+S I PA R + Sbjct: 753 IDEEHRFGVQQKERLKALRAEVDMLNLTATPIPRTLNM-AMGHLRDLSIIATPPARRLSV 811 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 KT + + + E I L+ +L G + Y++ + EK + RS++ Sbjct: 812 KTFVRQKDNAMVKEAI--LREIL-RGGQVYFLHNDVATIEKTAEDLRSLIPE-------- 860 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + + + HG+M + D E +M F + +L+ TT+IE GIDV A+ IIIE A+ FGLA Sbjct: 861 -ARVGVAHGQMRERDLEKIMSDFYHKRFNVLVCTTIIETGIDVPSANTIIIERADKFGLA 919 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629 QLHQLRGRVGR + LL PP ++ ++ RL + +D GF++A DL+ R Sbjct: 920 QLHQLRGRVGRSHHQAYAYLLTPPPKSITADAKKRLDAISEAQDLGAGFMLATHDLEIRG 979 Query: 630 EGEILGIKQSG 640 GE+LG +QSG Sbjct: 980 AGELLGEEQSG 990 >gi|71902673|ref|YP_279476.1| transcription-repair coupling factor [Streptococcus pyogenes MGAS6180] gi|71801768|gb|AAX71121.1| transcription-repair coupling factor [Streptococcus pyogenes MGAS6180] Length = 1167 Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 159/441 (36%), Positives = 240/441 (54%), Gaps = 25/441 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + + ++ G + + + + + F T+ Q +IK+I DM M R+L Sbjct: 579 LLKLYAERSQQKGFSFSPDDDLQRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLV 638 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQHYE K +N + V++++ Sbjct: 639 GDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYENFKARFENYPVEVDVLSRFR 698 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + + LER+ GQ IIIGTH L + + L L+++DE+ RFGV+ + L + T Sbjct: 699 SKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKT 758 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N + E I R Sbjct: 759 KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIR--- 815 Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 + G + +++ +++ EKK S + +V +SI +HG+MS+I E+ + Sbjct: 816 EMDRGGQIFYVYNKVDTIEKKVSELQELVPE---------ASIGFVHGQMSEIQLENTLI 866 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F NG +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR I+ L+ Sbjct: 867 DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926 Query: 596 YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 Y P L++ S RL +K TE GF IA DL R G ILG QSG + E Sbjct: 927 YRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 984 Query: 651 LHDSLLE--IARKDAKHILTQ 669 ++ LLE IA K K + Q Sbjct: 985 MYSQLLEQAIASKQGKTTVRQ 1005 >gi|309972993|gb|ADO96194.1| Transcription-repair coupling factor [Haemophilus influenzae R2846] Length = 1146 Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 152/409 (37%), Positives = 231/409 (56%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + + G + + Q+ PF T QE AI ++ DM Q M R++ Sbjct: 570 LLDVYAQREAKKGFAFKYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKAMDRLVC 629 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQHYE K N + VE+++ Sbjct: 630 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFK 689 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +++ LE + G+ I+IGTH L Q +++ L L+I+DE+HRFGV Q+ K+ Q Sbjct: 690 TAKEQKQILENLTEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRA 749 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I+ PA R IKT + + D+++ R + +L Sbjct: 750 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTF---VRQNDDLVVR-EAIL 805 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ + ++ + E+ +L + + + HG+M + + E VM Sbjct: 806 REILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVIVGHGQMRERELERVMSD 858 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ +T+IE GIDV A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 859 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 918 Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 PP ++K++ RL L+N ++ GF++A DL+ R GE+LG +QSG Sbjct: 919 PPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG 967 >gi|237736104|ref|ZP_04566585.1| transcription-repair coupling factor [Fusobacterium mortiferum ATCC 9817] gi|229421815|gb|EEO36862.1| transcription-repair coupling factor [Fusobacterium mortiferum ATCC 9817] Length = 988 Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 154/426 (36%), Positives = 238/426 (55%), Gaps = 22/426 (5%) Query: 225 RERLAYDEL-LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283 RE++A + L A +I + R+ E G + ++ + P+ T SQ AI+D Sbjct: 414 REKIAEEMLQFAKEIVEIQARRDL--EAGYSFAPDNLWQEEFEESFPYKETPSQLQAIED 471 Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343 + +DM M R++ GDVG GKT VA+ A A G Q V+M P +LAQQHYE + Sbjct: 472 VKRDMESSRIMDRVVCGDVGYGKTEVAIRAAFKAAIEGKQVVLMVPTTVLAQQHYERFTE 531 Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403 +N I +E+++ + + + L++I G I+IGTH + + +++ L LVI+DE+ Sbjct: 532 RMKNYPINIELLSRLLTSKEQTQTLKKIKEGGVDIVIGTHRILSEDVEFKDLRLVIIDEE 591 Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463 +FGV+ + KL + + VL +TATPIPRTL L LG D+S I P GRKPI T + Sbjct: 592 QKFGVKAKEKLKKLRSKVDVLTLTATPIPRTLNLALLGIRDLSVIDTPPEGRKPINTFFV 651 Query: 464 P--INRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIA 519 I E+I +K + EG + ++I ++ EKK R ++ + I Sbjct: 652 EGLEKNIREII--MKEIAREG-QVFYIFNSVKGIEKKTQELRKILPEY--------LKID 700 Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579 +HG+M+ D + + F+NG +L+ATT+IE GID+ +A+ +II+ A+ GL+Q++QL Sbjct: 701 FVHGQMTPRDIKEKIKEFENGEIDILVATTIIENGIDIENANTMIIDRADKLGLSQIYQL 760 Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED----GFLIAEEDLKQRKEGEILG 635 RGRVGRG S C LL +K + R +KN E+ G ++ ED++ R GEILG Sbjct: 761 RGRVGRGNRQSYCYLLTKEYQTKKAKEREESIKNLEEIDGGGLQLSMEDMRIRGAGEILG 820 Query: 636 IKQSGM 641 KQ G+ Sbjct: 821 EKQHGI 826 >gi|94987637|ref|YP_595738.1| transcription-repair coupling factor [Streptococcus pyogenes MGAS9429] gi|94991503|ref|YP_599602.1| transcription-repair coupling factor [Streptococcus pyogenes MGAS2096] gi|94541145|gb|ABF31194.1| transcription-repair coupling factor [Streptococcus pyogenes MGAS9429] gi|94545011|gb|ABF35058.1| Transcription-repair coupling factor [Streptococcus pyogenes MGAS2096] Length = 1167 Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 159/441 (36%), Positives = 240/441 (54%), Gaps = 25/441 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + + ++ G + + + + + F T+ Q +IK+I DM M R+L Sbjct: 579 LLKLYAERSQQKGFSFSPDDDLQRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLV 638 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQHYE K +N + V++++ Sbjct: 639 GDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYENFKARFENYPVEVDVLSRFR 698 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + + LER+ GQ IIIGTH L + + L L+++DE+ RFGV+ + L + T Sbjct: 699 SKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKT 758 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N + E I R Sbjct: 759 KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIR--- 815 Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 + G + +++ +++ EKK S + +V +SI +HG+MS+I E+ + Sbjct: 816 EMDRGGQIFYVYNKVDTIEKKVSELQELVPE---------ASIGFVHGQMSEIQLENTLI 866 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F NG +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR I+ L+ Sbjct: 867 DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926 Query: 596 YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 Y P L++ S RL +K TE GF IA DL R G ILG QSG + E Sbjct: 927 YRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 984 Query: 651 LHDSLLE--IARKDAKHILTQ 669 ++ LLE IA K K + Q Sbjct: 985 MYSQLLEQAIASKQGKTTVRQ 1005 >gi|145633284|ref|ZP_01789015.1| transcription-repair coupling factor [Haemophilus influenzae 3655] gi|144986130|gb|EDJ92720.1| transcription-repair coupling factor [Haemophilus influenzae 3655] Length = 1146 Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 152/409 (37%), Positives = 232/409 (56%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + + G + + Q+ PF T QE AI ++ DM Q M R++ Sbjct: 570 LLDVYAQREAKKGFAFKYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKAMDRLVC 629 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQHYE K N + VE+++ Sbjct: 630 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFK 689 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +++ L+ +A G+ I+IGTH L Q +++ L L+I+DE+HRFGV Q+ K+ Q Sbjct: 690 TAKEQKQILKSLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRA 749 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I+ PA R IKT + + D+++ R + +L Sbjct: 750 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTF---VRQNDDLVVR-EAIL 805 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ + ++ + E+ +L + + + HG+M + + E VM Sbjct: 806 REILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVIVGHGQMRERELERVMSD 858 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ +T+IE GIDV A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 859 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYTYLLT 918 Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 PP ++K++ RL L+N ++ GF++A DL+ R GE+LG +QSG Sbjct: 919 PPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG 967 >gi|217967893|ref|YP_002353399.1| transcription-repair coupling factor [Dictyoglomus turgidum DSM 6724] gi|217336992|gb|ACK42785.1| transcription-repair coupling factor [Dictyoglomus turgidum DSM 6724] Length = 1059 Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 153/414 (36%), Positives = 233/414 (56%), Gaps = 17/414 (4%) Query: 235 AGQIALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292 A +IA L++ ++EI G + + + +++ + P+ T+ Q A+++I +DM Sbjct: 500 AKEIAEELLKIYAQREITKGFAFSPDSPLQEELEASFPYIETEDQIKALREIKKDMESTK 559 Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352 M R+L GDVG GKT +AL A AV G Q I+ P ILA QH++ K+ + + V Sbjct: 560 PMERVLIGDVGFGKTELALRASFKAVLDGKQVAILVPTTILAYQHWKVFKERLEVFPVNV 619 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 EI++ P++ +++ +E+I G+ IIIGTH + Q +++ L L+IVDE+HRFGV Q+ Sbjct: 620 EILSRLKPKSEQKRIIEKIRKGEIDIIIGTHRILQKDVEFKDLGLIIVDEEHRFGVLQKE 679 Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 +K +L ++ATPIPRTL + G S + P R PI+T ++ N E+I Sbjct: 680 AFKKKYPHVDILYLSATPIPRTLSMVLSGIRQFSVLETPPENRLPIQTFVVEYN--PEII 737 Query: 473 -ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531 E ++ L G + Y++C IE + E + L T +IA HG+M D Sbjct: 738 QEGIRRELERGGQVYYVCNDIE-----RLEKIREELSKLVPEATYAIA--HGKMDDEKLT 790 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 VM +F +G +L+ATT+IE GIDV +A+ + +ENAEH GLAQL+QLRGR+GR + + Sbjct: 791 EVMSNFYDGKIDVLVATTIIESGIDVPNANTLFVENAEHMGLAQLYQLRGRIGRSYKQAY 850 Query: 592 CILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640 L+ P LS S RL LK G +A DL+ R G+ILG +Q G Sbjct: 851 AYFLHAPLKKLSLESIKRLEALKEFSSLGSGLRLALRDLEIRGAGKILGKEQHG 904 >gi|327467732|gb|EGF13226.1| transcription-repair coupling factor [Streptococcus sanguinis SK330] Length = 1167 Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 157/439 (35%), Positives = 241/439 (54%), Gaps = 28/439 (6%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 I L R Q K G + + ++ + P+ T+ Q +I+++ +DM M R+ Sbjct: 584 IKLYAERSQLK---GFAFSTDDSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRPMDRL 640 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 L GDVG GKT VA+ A AV Q ++ P +LAQQHY K+ + + VE+++ Sbjct: 641 LVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYTNFKERFNDFAVNVEVLSR 700 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 +A +++ LE++ GQ IIIGTH L +++ L L+I+DE+ RFGV+ + L + Sbjct: 701 FRSKAEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFADLGLIIIDEEQRFGVKHKETLKEL 760 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL 475 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N I E + R Sbjct: 761 KKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLR- 819 Query: 476 KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 + G + Y++ +++ E+K S R ++ +SI +HG+MS+I E+ Sbjct: 820 --EIDRGGQVYYLYNKVDTIEQKVSELRELIPE---------ASIGYVHGQMSEIRLENT 868 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 + F NG +L+ TT+IE G+D+ +A+ + +ENA+H GL+ L+QLRGRVGR I+ Sbjct: 869 LLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGLSTLYQLRGRVGRSNRIAYAY 928 Query: 594 LLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648 L+Y P L++ S RL +K TE GF IA DL R G ILG QSG + Sbjct: 929 LMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGSMQSGFIDSV--G 986 Query: 649 PELHDSLLE--IARKDAKH 665 E++ LLE IA+K K Sbjct: 987 FEMYSQLLEEAIAKKQGKE 1005 >gi|238897365|ref|YP_002923042.1| transcription-repair ATP-dependent coupling factor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465120|gb|ACQ66894.1| transcription-repair ATP-dependent coupling factor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 1151 Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 157/430 (36%), Positives = 236/430 (54%), Gaps = 23/430 (5%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 WT ++ L +A + LL + Q + G + + Q + PF T QE Sbjct: 551 WTKACKKTLEKVRDVAAE--LLGIYSQRAAKPGFSFKKDSEQYQLFCESFPFETTPDQEQ 608 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI +L DMSQ M R++ GDVG GKT VA+ A AV Q ++ P +LAQQH++ Sbjct: 609 AIHAVLNDMSQPLAMDRLVCGDVGFGKTEVAMRAAFLAVINHKQVAVLVPTTLLAQQHFD 668 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 + + I +E+++ +++ L+++A G+ I+IGTH L ++ + + L L+I Sbjct: 669 NFRDRFAHWPIQIEMLSRFRTAKEQKQILQQVAEGKLDILIGTHKLLKNDLCWKDLGLLI 728 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 VDE+HRFGV+ + ++ T +L +TATPIPRTL + G D+S I PA R +K Sbjct: 729 VDEEHRFGVRHKERIKAIRTDVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLSVK 788 Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515 T + + I E I L+ +L G + Y++ ++E EK + +V Sbjct: 789 TFVREYDSFLIKEAI--LREIL-RGGQVYYLYNEVETIEKTYETLKKLVPE--------- 836 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + I + HG+M + D E VM+ F + LL+ TT+IE GID+ +A+ IIIE A HFGLAQ Sbjct: 837 ARITLAHGQMRERDLERVMNDFHHQRFNLLVCTTIIETGIDIANANTIIIEKANHFGLAQ 896 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630 LHQLRGRVGR + LL PP ++ ++ RL V+ + ED GF +A DL+ R Sbjct: 897 LHQLRGRVGRSHHQAYAYLLTPPPKAITNDAKKRLEVITSLEDLGSGFALATHDLEIRGA 956 Query: 631 GEILGIKQSG 640 GE+LG QSG Sbjct: 957 GELLGENQSG 966 >gi|306826404|ref|ZP_07459718.1| transcription-repair coupling factor [Streptococcus pyogenes ATCC 10782] gi|304431399|gb|EFM34394.1| transcription-repair coupling factor [Streptococcus pyogenes ATCC 10782] Length = 1167 Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 158/441 (35%), Positives = 240/441 (54%), Gaps = 25/441 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + + ++ G + + + + + F T+ Q +IK+I DM M R+L Sbjct: 579 LLKLYAERSQQKGFSFSPDDDLQRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLV 638 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQHYE K +N + V++++ Sbjct: 639 GDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYENFKARFENYPVEVDVLSRFR 698 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + + LER+ GQ IIIGTH L + + L L+++DE+ RFGV+ + L + T Sbjct: 699 SKKEQAETLERVQKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKT 758 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N + E I R Sbjct: 759 KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIR--- 815 Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 + G + +++ +++ EKK + + +V +SI +HG+MS+I E+ + Sbjct: 816 EMDRGGQIFYVYNKVDTIEKKVAELQELVPE---------ASIGFVHGQMSEIQLENTLI 866 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F NG +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR I+ L+ Sbjct: 867 DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926 Query: 596 YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 Y P L++ S RL +K TE GF IA DL R G ILG QSG + E Sbjct: 927 YRPDKILTEVSEKRLETIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 984 Query: 651 LHDSLLE--IARKDAKHILTQ 669 ++ LLE IA K K + Q Sbjct: 985 MYSQLLEQVIASKQGKTTVRQ 1005 >gi|222152208|ref|YP_002561383.1| transcription-repair coupling factor [Streptococcus uberis 0140J] gi|222113019|emb|CAR40328.1| putative transcription-repair coupling factor [Streptococcus uberis 0140J] Length = 1166 Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 157/441 (35%), Positives = 245/441 (55%), Gaps = 25/441 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + + ++ G + + + + + P+ T+ Q +I +I QDM + M R+L Sbjct: 579 LLKLYAERSQQKGFSFSADDDLQKSFDDDFPYVETEDQIRSIIEIKQDMESNHPMDRLLV 638 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q I+ P +LAQQH+E K+ +N I +++++ Sbjct: 639 GDVGFGKTEVAMRAAFKAVNDHKQVAILVPTTVLAQQHFENFKERFENYPIEIDVLSRFR 698 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + LE++ GQ IIIGTH L +Q+ L L+++DE+ RFGV+ + KL + T Sbjct: 699 SKKEQGDTLEKLKKGQVDIIIGTHRLLSKDVQFSDLGLIVIDEEQRFGVKHKEKLKELKT 758 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N + E I R Sbjct: 759 KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLETNPGLVREAIIR--- 815 Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 + G + +++ +++ +KK S + +V +SI +HG+MS+I E+ + Sbjct: 816 EMDRGGQCFYVYNKVDSIDKKVSELQELVPE---------ASIGFVHGQMSEIQLENTLI 866 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F NG +L+ATT+IE G+D+ + + + +ENA+H GL+ L+QLRGRVGR I+ L+ Sbjct: 867 DFINGDYDVLVATTIIETGVDISNVNTLFVENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926 Query: 596 YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 Y P L++ S RL +K TE GF IA DL R G ILG QSG + E Sbjct: 927 YRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 984 Query: 651 LHDSLLE--IARKDAKHILTQ 669 ++ LLE IA++ K + Q Sbjct: 985 MYSQLLEDAIAKRQGKTFVRQ 1005 >gi|21909542|ref|NP_663810.1| putative transcription-repair coupling factor [Streptococcus pyogenes MGAS315] gi|21903722|gb|AAM78613.1| putative transcription-repair coupling factor [Streptococcus pyogenes MGAS315] Length = 1139 Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 158/441 (35%), Positives = 240/441 (54%), Gaps = 25/441 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + + ++ G + + + + + F T+ Q +IK+I DM M R+L Sbjct: 551 LLKLYAERSQQKGFSFSPDDDLQRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLV 610 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQHYE K +N + V++++ Sbjct: 611 GDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYENFKARFENYPVEVDVLSRFR 670 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + + LER+ GQ IIIGTH L + + L L+++DE+ RFGV+ + L + T Sbjct: 671 SKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKT 730 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N + E I R Sbjct: 731 KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIR--- 787 Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 + G + +++ +++ EKK + + +V +SI +HG+MS+I E+ + Sbjct: 788 EMDRGGQIFYVYNKVDTIEKKVAELQELVPE---------ASIGFVHGQMSEIQLENTLI 838 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F NG +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR I+ L+ Sbjct: 839 DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 898 Query: 596 YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 Y P L++ S RL +K TE GF IA DL R G ILG QSG + E Sbjct: 899 YRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 956 Query: 651 LHDSLLE--IARKDAKHILTQ 669 ++ LLE IA K K + Q Sbjct: 957 MYSQLLEQAIASKQGKTTVRQ 977 >gi|68250212|ref|YP_249324.1| transcription-repair coupling factor [Haemophilus influenzae 86-028NP] gi|68058411|gb|AAX88664.1| transcription-repair coupling factor [Haemophilus influenzae 86-028NP] Length = 1146 Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 152/409 (37%), Positives = 231/409 (56%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + + G + + Q+ PF T QE AI ++ DM Q M R++ Sbjct: 570 LLDVYAQREAKKGFAFKYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKAMDRLVC 629 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQHYE K N + VE+++ Sbjct: 630 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFK 689 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +++ LE +A G+ I+IGTH L Q +++ L L+I+DE+HRFGV Q+ K+ Q Sbjct: 690 TAKEQKQILENLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRA 749 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I+ PA R IKT + + +++ R + +L Sbjct: 750 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTF---VRQNGDLVVR-EAIL 805 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ + ++ + E+ +L + + + HG+M + + E VM Sbjct: 806 REILRGGQVYYLHNDV-----ASIENTAEKLTTLVPE--ARVIVGHGQMRERELERVMSD 858 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ +T+IE GIDV A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 859 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 918 Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 PP ++K++ RL L+N ++ GF++A DL+ R GE+LG +QSG Sbjct: 919 PPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG 967 >gi|50913352|ref|YP_059324.1| transcription-repair coupling factor [Streptococcus pyogenes MGAS10394] gi|50902426|gb|AAT86141.1| Transcription-repair coupling factor [Streptococcus pyogenes MGAS10394] Length = 1167 Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 158/441 (35%), Positives = 240/441 (54%), Gaps = 25/441 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + + ++ G + + + + + F T+ Q +IK+I DM M R+L Sbjct: 579 LLKLYAERSQQKGFSFSPDDDLQRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLV 638 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQHYE K +N + V++++ Sbjct: 639 GDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYENFKARFENYPVEVDVLSRFR 698 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + + LER+ GQ IIIGTH L + + L L+++DE+ RFGV+ + L + T Sbjct: 699 SKKEQAETLERVQKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKT 758 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N + E I R Sbjct: 759 KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIR--- 815 Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 + G + +++ +++ EKK + + +V +SI +HG+MS+I E+ + Sbjct: 816 EMDRGGQIFYVYNKVDTIEKKVAELQELVPE---------ASIGFVHGQMSEIQLENTLI 866 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F NG +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR I+ L+ Sbjct: 867 DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926 Query: 596 YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 Y P L++ S RL +K TE GF IA DL R G ILG QSG + E Sbjct: 927 YRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 984 Query: 651 LHDSLLE--IARKDAKHILTQ 669 ++ LLE IA K K + Q Sbjct: 985 MYSQLLEQAIASKQGKTTVRQ 1005 >gi|307131510|ref|YP_003883526.1| transcription-repair coupling factor [Dickeya dadantii 3937] gi|306529039|gb|ADM98969.1| transcription-repair coupling factor [Dickeya dadantii 3937] Length = 1149 Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 157/429 (36%), Positives = 232/429 (54%), Gaps = 21/429 (4%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 WT AR++ A +++ LL + Q G + + Q + PF T Q Sbjct: 550 WTR-ARQKAA-EKVRDVAAELLDVYAQRAAHTGFAFKHDREQYQLFCQGFPFDTTPDQAQ 607 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI +L DM + M R++ GDVG GKT VA+ A AVE Q ++ P +LAQQH++ Sbjct: 608 AINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHFD 667 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 + N + +E+++ Q + + LE+ G+ I+IGTH L Q +++ L L+I Sbjct: 668 NFRDRFANWPVRIEMLSRFRSQKEQTQVLEQTQEGKVDILIGTHKLLQSDVRWRDLGLLI 727 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 VDE+HRFGV+ + ++ +L +TATPIPRTL + G D+S I PA R +K Sbjct: 728 VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLAVK 787 Query: 460 TVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 T + D ++ R + +L E G + Y++ +E N +R N L + Sbjct: 788 TF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----NIEKAAQRLNELVPE--A 836 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 IAI HG+M + D E VM+ F + +L+ TT+IE GID+ A+ IIIE A+HFGLAQL Sbjct: 837 RIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQL 896 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 HQLRGRVGR + LL P +S +++ RL + + ED GF +A DL+ R G Sbjct: 897 HQLRGRVGRSHHQAYAYLLTPNPKAMSSDAHKRLEAIASLEDLGAGFALATHDLEIRGAG 956 Query: 632 EILGIKQSG 640 E+LG QSG Sbjct: 957 ELLGEDQSG 965 >gi|114563569|ref|YP_751082.1| transcription-repair coupling factor [Shewanella frigidimarina NCIMB 400] gi|114334862|gb|ABI72244.1| transcription-repair coupling factor [Shewanella frigidimarina NCIMB 400] Length = 1178 Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 152/428 (35%), Positives = 236/428 (55%), Gaps = 19/428 (4%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W ++ + +A ++ + R+Q + + I+ E + AQ + PF T QES Sbjct: 574 WAKAKKKAIERIRDVAAELLDVYARRQARPGDAMSID-EEEYAQ-FSQGFPFEETVDQES 631 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI +L+DM M R++ GDVG GKT VA+ A AV AG Q V++ P +LAQQHYE Sbjct: 632 AIHAVLEDMQAPRAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVVLVPTTLLAQQHYE 691 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 K + I++E+++ + +E+++ G+ I+IGTH L + L L++ Sbjct: 692 NFKDRFADWPIVIEVMSRFRTAKEQSSVVEQLSEGKVDIVIGTHKLLSSEANFDNLGLLV 751 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 +DE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S I PA R +K Sbjct: 752 IDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVK 811 Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSS 517 T + ++ L+ +L G + Y++ +E EK N R ++ + Sbjct: 812 TFVREYDKATAREAILREIL-RGGQVYYLHNNVETIEKTAQNIRDLLPE---------AR 861 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 + HG+M + D E VM F + +L+ TT+IE GIDV A+ III+ A+ FGLAQLH Sbjct: 862 VITAHGQMRERDLEKVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIDRADMFGLAQLH 921 Query: 578 QLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632 QLRGRVGR + ++ HP ++ ++ RL+ ++ ED GFL+A +DL+ R GE Sbjct: 922 QLRGRVGRSHHQAYAYMMTPHPKRMTPDARKRLAAIEALEDLGAGFLLATQDLEIRGAGE 981 Query: 633 ILGIKQSG 640 +LG +QSG Sbjct: 982 LLGDEQSG 989 >gi|15674256|ref|NP_268429.1| putative transcription-repair coupling factor [Streptococcus pyogenes M1 GAS] gi|71909820|ref|YP_281370.1| transcription-repair coupling factor [Streptococcus pyogenes MGAS5005] gi|13621331|gb|AAK33151.1| putative transcription-repair coupling factor [Streptococcus pyogenes M1 GAS] gi|71852602|gb|AAZ50625.1| transcription-repair coupling factor [Streptococcus pyogenes MGAS5005] Length = 1167 Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 158/441 (35%), Positives = 240/441 (54%), Gaps = 25/441 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + + ++ G + + + + + F T+ Q +IK+I DM M R+L Sbjct: 579 LLKLYAERSQQKGFSFSPDDDLQRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLV 638 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQHYE K +N + V++++ Sbjct: 639 GDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYENFKARFENYPVEVDVLSRFR 698 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + + LER+ GQ IIIGTH L + + L L+++DE+ RFGV+ + L + T Sbjct: 699 SKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKT 758 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N + E I R Sbjct: 759 KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIR--- 815 Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 + G + +++ +++ EKK + + +V +SI +HG+MS+I E+ + Sbjct: 816 EMDRGGQIFYVYNKVDTIEKKVAELQELVPE---------ASIGFVHGQMSEIQLENTLI 866 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F NG +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR I+ L+ Sbjct: 867 DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926 Query: 596 YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 Y P L++ S RL +K TE GF IA DL R G ILG QSG + E Sbjct: 927 YRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 984 Query: 651 LHDSLLE--IARKDAKHILTQ 669 ++ LLE IA K K + Q Sbjct: 985 MYSQLLEQAIASKQGKTTVRQ 1005 >gi|28894918|ref|NP_801268.1| transcription-repair coupling factor [Streptococcus pyogenes SSI-1] gi|28810163|dbj|BAC63101.1| putative transcription-repair coupling factor [Streptococcus pyogenes SSI-1] Length = 1167 Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 158/441 (35%), Positives = 240/441 (54%), Gaps = 25/441 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + + ++ G + + + + + F T+ Q +IK+I DM M R+L Sbjct: 579 LLKLYAERSQQKGFSFSPDDDLQRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLV 638 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQHYE K +N + V++++ Sbjct: 639 GDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYENFKARFENYPVEVDVLSRFR 698 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + + LER+ GQ IIIGTH L + + L L+++DE+ RFGV+ + L + T Sbjct: 699 SKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKT 758 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N + E I R Sbjct: 759 KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIR--- 815 Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 + G + +++ +++ EKK + + +V +SI +HG+MS+I E+ + Sbjct: 816 EMDRGGQIFYVYNKVDTIEKKVAELQELVPE---------ASIGFVHGQMSEIQLENTLI 866 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F NG +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR I+ L+ Sbjct: 867 DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926 Query: 596 YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 Y P L++ S RL +K TE GF IA DL R G ILG QSG + E Sbjct: 927 YRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 984 Query: 651 LHDSLLE--IARKDAKHILTQ 669 ++ LLE IA K K + Q Sbjct: 985 MYSQLLEQAIASKQGKTTVRQ 1005 >gi|332365100|gb|EGJ42865.1| transcription-repair coupling factor [Streptococcus sanguinis SK355] Length = 1167 Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 157/439 (35%), Positives = 241/439 (54%), Gaps = 28/439 (6%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 I L R Q K G + + ++ + P+ T+ Q +I+++ +DM M R+ Sbjct: 584 IKLYAERSQLK---GFAFSADDSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRPMDRL 640 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 L GDVG GKT VA+ A AV Q ++ P +LAQQHY K+ + + VE+++ Sbjct: 641 LVGDVGFGKTEVAMRAAFKAVNNHKQVAVLVPTTVLAQQHYTNFKERFNDFAVNVEVLSR 700 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 +A +++ LE++ GQ IIIGTH L +++ L L+I+DE+ RFGV+ + L + Sbjct: 701 FRSKAEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFADLGLIIIDEEQRFGVKHKETLKEL 760 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL 475 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N I E I R Sbjct: 761 KKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAILR- 819 Query: 476 KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 + G + Y++ +++ E+K S R ++ +SI +HG+MS+I E+ Sbjct: 820 --EIDRGGQVYYLYNKVDTIEQKVSELRELIPE---------ASIGYVHGQMSEIRLENT 868 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 + F NG +L+ TT+IE G+D+ +A+ + +ENA+H GL+ L+QLRGRVGR I+ Sbjct: 869 LLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGLSTLYQLRGRVGRSNRIAYAY 928 Query: 594 LLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648 L+Y P L++ S RL +K TE GF IA DL R G ILG QSG + Sbjct: 929 LMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGSMQSGFIDSV--G 986 Query: 649 PELHDSLLE--IARKDAKH 665 E++ LLE IA+K + Sbjct: 987 FEMYSQLLEEAIAKKQGRE 1005 >gi|56808860|ref|ZP_00366571.1| COG1197: Transcription-repair coupling factor (superfamily II helicase) [Streptococcus pyogenes M49 591] Length = 1167 Score = 243 bits (621), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 158/441 (35%), Positives = 240/441 (54%), Gaps = 25/441 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + + ++ G + + + + + F T+ Q +IK+I DM M R+L Sbjct: 579 LLKLYAERSQQKGFSFSPDDDLQRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLV 638 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQHYE K +N + V++++ Sbjct: 639 GDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYENFKARFENYPVEVDVLSRFR 698 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + + LER+ GQ IIIGTH L + + L L+++DE+ RFGV+ + L + T Sbjct: 699 SKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKT 758 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N + E I R Sbjct: 759 KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIR--- 815 Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 + G + +++ +++ EKK + + +V +SI +HG+MS+I E+ + Sbjct: 816 EMDRGGQIFYVYNKVDTIEKKVAELQELVPE---------ASIGFVHGQMSEIQLENTLI 866 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F NG +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR I+ L+ Sbjct: 867 DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926 Query: 596 YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 Y P L++ S RL +K TE GF IA DL R G ILG QSG + E Sbjct: 927 YRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 984 Query: 651 LHDSLLE--IARKDAKHILTQ 669 ++ LLE IA K K + Q Sbjct: 985 MYSQLLEQAIASKQGKTTVRQ 1005 >gi|209558593|ref|YP_002285065.1| Transcription-repair coupling factor [Streptococcus pyogenes NZ131] gi|209539794|gb|ACI60370.1| Transcription-repair coupling factor [Streptococcus pyogenes NZ131] Length = 1139 Score = 243 bits (621), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 158/441 (35%), Positives = 240/441 (54%), Gaps = 25/441 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + + ++ G + + + + + F T+ Q +IK+I DM M R+L Sbjct: 551 LLKLYAERSQQKGFSFSPDDDLQRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLV 610 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQHYE K +N + V++++ Sbjct: 611 GDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYENFKARFENYPVEVDVLSRFR 670 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + + LER+ GQ IIIGTH L + + L L+++DE+ RFGV+ + L + T Sbjct: 671 SKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKT 730 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N + E I R Sbjct: 731 KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIR--- 787 Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 + G + +++ +++ EKK + + +V +SI +HG+MS+I E+ + Sbjct: 788 EMDRGGQIFYVYNKVDTIEKKVAELQELVPE---------ASIGFVHGQMSEIQLENTLI 838 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F NG +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR I+ L+ Sbjct: 839 DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 898 Query: 596 YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 Y P L++ S RL +K TE GF IA DL R G ILG QSG + E Sbjct: 899 YRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 956 Query: 651 LHDSLLE--IARKDAKHILTQ 669 ++ LLE IA K K + Q Sbjct: 957 MYSQLLEQAIASKQGKTTVRQ 977 >gi|325695766|gb|EGD37665.1| transcription-repair coupling factor [Streptococcus sanguinis SK150] Length = 1167 Score = 243 bits (620), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 156/439 (35%), Positives = 241/439 (54%), Gaps = 28/439 (6%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 I L R Q K G + + ++ + P+ T+ Q +I+++ +DM M R+ Sbjct: 584 IKLYAERSQLK---GFAFSADDSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRPMDRL 640 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 L GDVG GKT VA+ A AV Q ++ P +LAQQHY K+ + + VE+++ Sbjct: 641 LVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYTNFKERFNDFAVNVEVLSR 700 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 +A +++ LE++ GQ IIIGTH L +++ L L+I+DE+ RFGV+ + L + Sbjct: 701 FRSKAEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFADLGLIIIDEEQRFGVKHKETLKEL 760 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL 475 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N I E + R Sbjct: 761 KKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLR- 819 Query: 476 KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 + G + Y++ +++ E+K S R ++ +SI +HG+MS+I E+ Sbjct: 820 --EIDRGGQVYYLYNKVDTIEQKVSELRELIPE---------ASIGYVHGQMSEIRLENT 868 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 + F NG +L+ TT+IE G+D+ +A+ + +ENA+H GL+ L+QLRGRVGR I+ Sbjct: 869 LLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGLSTLYQLRGRVGRSNRIAYAY 928 Query: 594 LLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648 L+Y P L++ S RL +K TE GF IA DL R G ILG QSG + Sbjct: 929 LMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGSMQSGFIDSV--G 986 Query: 649 PELHDSLLE--IARKDAKH 665 E++ LLE IA+K + Sbjct: 987 FEMYSQLLEEAIAKKQGRE 1005 >gi|94993402|ref|YP_601500.1| transcription-repair coupling factor [Streptococcus pyogenes MGAS10750] gi|94546910|gb|ABF36956.1| Transcription-repair coupling factor [Streptococcus pyogenes MGAS10750] Length = 1167 Score = 243 bits (620), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 158/441 (35%), Positives = 240/441 (54%), Gaps = 25/441 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + + ++ G + + + + + F T+ Q +IK+I DM M R+L Sbjct: 579 LLKLYAERSQQKGFSFSPDDDLQRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLV 638 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQHYE K +N + V++++ Sbjct: 639 GDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYENFKARFENYPVEVDVLSRFR 698 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + + LER+ GQ IIIGTH L + + L L+++DE+ RFGV+ + L + T Sbjct: 699 SKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKT 758 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N + E I R Sbjct: 759 KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIR--- 815 Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 + G + +++ +++ EKK + + +V +SI +HG+MS+I E+ + Sbjct: 816 EMDRGGQIFYVYNKVDTIEKKVAELQELVPE---------ASIGFVHGQMSEIQLENTLI 866 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F NG +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR I+ L+ Sbjct: 867 DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926 Query: 596 YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 Y P L++ S RL +K TE GF IA DL R G ILG QSG + E Sbjct: 927 YRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 984 Query: 651 LHDSLLE--IARKDAKHILTQ 669 ++ LLE IA K K + Q Sbjct: 985 MYSQLLEQAIASKQGKTTIRQ 1005 >gi|156934399|ref|YP_001438315.1| transcription-repair coupling factor [Cronobacter sakazakii ATCC BAA-894] gi|156532653|gb|ABU77479.1| hypothetical protein ESA_02230 [Cronobacter sakazakii ATCC BAA-894] Length = 1148 Score = 243 bits (620), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 149/386 (38%), Positives = 214/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 591 QLFCEGFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+++ + + LE+ A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIELLSRFRSAKEQAQVLEQAAEGKVDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKMKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDNLVVR-EAILREVLRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER +L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLANLVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL PP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPPPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEDQSG 965 >gi|332363612|gb|EGJ41393.1| transcription-repair coupling factor [Streptococcus sanguinis SK1059] Length = 1167 Score = 243 bits (620), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 156/439 (35%), Positives = 241/439 (54%), Gaps = 28/439 (6%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 I L R Q K G + + ++ + P+ T+ Q +I+++ +DM M R+ Sbjct: 584 IKLYAERSQLK---GFAFSADDSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRPMDRL 640 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 L GDVG GKT VA+ A AV Q ++ P +LAQQHY K+ + + VE+++ Sbjct: 641 LVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYTNFKERFNDFAVNVEVLSR 700 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 +A +++ LE++ GQ IIIGTH L +++ L L+I+DE+ RFGV+ + L + Sbjct: 701 FRSKAEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFADLGLIIIDEEQRFGVKHKETLKEL 760 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL 475 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N I E + R Sbjct: 761 KKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLR- 819 Query: 476 KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 + G + Y++ +++ E+K S R ++ +SI +HG+MS+I E+ Sbjct: 820 --EIDRGGQVYYLYNKVDTIEQKVSELRELIPE---------ASIGYVHGQMSEIRLENT 868 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 + F NG +L+ TT+IE G+D+ +A+ + +ENA+H GL+ L+QLRGRVGR I+ Sbjct: 869 LLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGLSTLYQLRGRVGRSNRIAYAY 928 Query: 594 LLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648 L+Y P L++ S RL +K TE GF IA DL R G ILG QSG + Sbjct: 929 LMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGSMQSGFIDSV--G 986 Query: 649 PELHDSLLE--IARKDAKH 665 E++ LLE IA+K + Sbjct: 987 FEMYSQLLEEAIAKKQGRE 1005 >gi|317491827|ref|ZP_07950262.1| transcription-repair coupling factor [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920261|gb|EFV41585.1| transcription-repair coupling factor [Enterobacteriaceae bacterium 9_2_54FAA] Length = 1153 Score = 243 bits (620), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 149/398 (37%), Positives = 217/398 (54%), Gaps = 21/398 (5%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G + + Q ++ PF T Q AI +L DM Q M R++ GDVG GKT VA+ Sbjct: 586 GFAFKQDREAYQMFCQSFPFETTPDQSMAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAM 645 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A AV Q ++ P +LAQQHY+ + N + +E+I+ + + L+ Sbjct: 646 RAAFLAVHNNKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQVLQDA 705 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 A G+ I+IGTH L Q +Q+ L L+IVDE+HRFGV+Q+ ++ +L +TATPI Sbjct: 706 AEGKVDILIGTHKLLQADVQWRDLGLLIVDEEHRFGVRQKERIKAMRADVDILTLTATPI 765 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWIC 489 PRTL + G D+S I PA R +KT + D ++ R ++ ++ G + Y++ Sbjct: 766 PRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDSLVVREAILREVTRGGQVYYLY 822 Query: 490 PQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 +E EK +V + IAI HG+M + + E VM+ F + +L+ Sbjct: 823 NDVENIEKAAQCLAELVPE---------ARIAIGHGQMRERELERVMNDFHHQRFNVLVC 873 Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSY 605 TT+IE GID+ A+ IIIE A+HFGLAQLHQLRGRVGR + LL PP +S ++ Sbjct: 874 TTIIETGIDIPSANTIIIERADHFGLAQLHQLRGRVGRSFHQAYAYLLTPPPKAMSTDAQ 933 Query: 606 TRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 RL + + ED GF +A DL+ R GE+LG QSG Sbjct: 934 KRLEAIASLEDLGAGFALATHDLEIRGAGELLGDDQSG 971 >gi|324989584|gb|EGC21530.1| transcription-repair coupling factor [Streptococcus sanguinis SK353] Length = 1167 Score = 243 bits (620), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 156/439 (35%), Positives = 241/439 (54%), Gaps = 28/439 (6%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 I L R Q K G + + ++ + P+ T+ Q +I+++ +DM M R+ Sbjct: 584 IKLYAERSQLK---GFAFSADDSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRPMDRL 640 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 L GDVG GKT VA+ A AV Q ++ P +LAQQHY K+ + + VE+++ Sbjct: 641 LVGDVGFGKTEVAMRAAFKAVNNHKQVAVLVPTTVLAQQHYTNFKERFNDFAVNVEVLSR 700 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 +A +++ LE++ GQ IIIGTH L +++ L L+I+DE+ RFGV+ + L + Sbjct: 701 FRSKAEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFADLGLIIIDEEQRFGVKHKETLKEL 760 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL 475 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N I E + R Sbjct: 761 KKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLR- 819 Query: 476 KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 + G + Y++ +++ E+K S R ++ +SI +HG+MS+I E+ Sbjct: 820 --EIDRGGQVYYLYNKVDTIEQKVSELRELIPE---------ASIGYVHGQMSEIRLENT 868 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 + F NG +L+ TT+IE G+D+ +A+ + +ENA+H GL+ L+QLRGRVGR I+ Sbjct: 869 LLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGLSTLYQLRGRVGRSNRIAYAY 928 Query: 594 LLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648 L+Y P L++ S RL +K TE GF IA DL R G ILG QSG + Sbjct: 929 LMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGSMQSGFIDSV--G 986 Query: 649 PELHDSLLE--IARKDAKH 665 E++ LLE IA+K + Sbjct: 987 FEMYSQLLEEAIAKKQGRE 1005 >gi|125716894|ref|YP_001034027.1| transcription-repair coupling factor [Streptococcus sanguinis SK36] gi|125496811|gb|ABN43477.1| Transcription-repair coupling factor, putative [Streptococcus sanguinis SK36] Length = 1167 Score = 243 bits (620), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 156/439 (35%), Positives = 241/439 (54%), Gaps = 28/439 (6%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 I L R Q K G + + ++ + P+ T+ Q +I+++ +DM M R+ Sbjct: 584 IKLYAERSQLK---GFAFSADDSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRPMDRL 640 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 L GDVG GKT VA+ A AV Q ++ P +LAQQHY K+ + + VE+++ Sbjct: 641 LVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYTNFKERFNDFAVNVEVLSR 700 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 +A +++ LE++ GQ IIIGTH L +++ L L+I+DE+ RFGV+ + L + Sbjct: 701 FRSKAEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFADLGLIIIDEEQRFGVKHKETLKEL 760 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL 475 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N I E + R Sbjct: 761 KKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLR- 819 Query: 476 KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 + G + Y++ +++ E+K S R ++ +SI +HG+MS+I E+ Sbjct: 820 --EIDRGGQVYYLYNKVDTIEQKVSELRELIPE---------ASIGYVHGQMSEIRLENT 868 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 + F NG +L+ TT+IE G+D+ +A+ + +ENA+H GL+ L+QLRGRVGR I+ Sbjct: 869 LLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGLSTLYQLRGRVGRSNRIAYAY 928 Query: 594 LLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648 L+Y P L++ S RL +K TE GF IA DL R G ILG QSG + Sbjct: 929 LMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGSMQSGFIDSV--G 986 Query: 649 PELHDSLLE--IARKDAKH 665 E++ LLE IA+K + Sbjct: 987 FEMYSQLLEEAIAKKQGRE 1005 >gi|323350835|ref|ZP_08086494.1| transcription-repair coupling factor [Streptococcus sanguinis VMC66] gi|322123009|gb|EFX94712.1| transcription-repair coupling factor [Streptococcus sanguinis VMC66] Length = 1167 Score = 243 bits (619), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 156/439 (35%), Positives = 241/439 (54%), Gaps = 28/439 (6%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 I L R Q K G + + ++ + P+ T+ Q +I+++ +DM M R+ Sbjct: 584 IKLYAERSQLK---GFAFSADDSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRPMDRL 640 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 L GDVG GKT VA+ A AV Q ++ P +LAQQHY K+ + + VE+++ Sbjct: 641 LVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYTNFKERFNDFAVNVEVLSR 700 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 +A +++ LE++ GQ IIIGTH L +++ L L+I+DE+ RFGV+ + L + Sbjct: 701 FRSKAEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFADLGLIIIDEEQRFGVKHKETLKEL 760 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL 475 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N I E + R Sbjct: 761 KKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLR- 819 Query: 476 KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 + G + Y++ +++ E+K S R ++ +SI +HG+MS+I E+ Sbjct: 820 --EIDRGGQVYYLYNKVDTIEQKVSELRELIPE---------ASIGYVHGQMSEIRLENT 868 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 + F NG +L+ TT+IE G+D+ +A+ + +ENA+H GL+ L+QLRGRVGR I+ Sbjct: 869 LLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGLSTLYQLRGRVGRSNRIAYAY 928 Query: 594 LLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648 L+Y P L++ S RL +K TE GF IA DL R G ILG QSG + Sbjct: 929 LMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGSMQSGFIDSV--G 986 Query: 649 PELHDSLLE--IARKDAKH 665 E++ LLE IA+K + Sbjct: 987 FEMYSQLLEEAIAKKQGRE 1005 >gi|312282627|dbj|BAJ34179.1| unnamed protein product [Thellungiella halophila] Length = 823 Score = 243 bits (619), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 146/380 (38%), Positives = 224/380 (58%), Gaps = 17/380 (4%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 P++ T Q+ A D+ +D++++ M R++ GDVG GKT VAL A+ V AG QA+++ Sbjct: 266 FPYNATPDQKQAFLDVDKDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 325 Query: 328 APIGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 AP +LA+QHY+ I ++++ QI V +++ +A + + LE I +G +II+GTH+L Sbjct: 326 APTIVLAKQHYDVISERFSLYPQIKVGLLSRFQTKAEKEEYLEMIKNGDLNIIVGTHSLL 385 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 + Y L L++VDE+ RFGV+Q+ K+ T+ VL ++ATPIPRTL L G D S Sbjct: 386 GSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDAS 445 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 I+ P R PIKT + R ++VIE +K L G + +++ P+I + + E Sbjct: 446 LISTPPPERIPIKTHLSSF-RKEKVIEAIKNELDRGGQVFYVLPRI--------KGLEEV 496 Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 N L E F IA+ HG+ E M+ F G K+LI T ++E G+D+ +A+ III Sbjct: 497 MNFLEEAFPDIDIAMAHGKRYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTIII 556 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLI 620 ++ + FGLAQL+QLRGRVGR ++ + L Y LS + RLS L+ + GF + Sbjct: 557 QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRELGQGFQL 616 Query: 621 AEEDLKQRKEGEILGIKQSG 640 AE D+ R G I G +Q+G Sbjct: 617 AERDMGIRGFGTIFGEQQTG 636 >gi|251781475|ref|YP_002995776.1| putative transcription-repair coupling factor [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390103|dbj|BAH80562.1| putative transcription-repair coupling factor [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 1166 Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 157/441 (35%), Positives = 240/441 (54%), Gaps = 25/441 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + + ++ G + + + + + F T+ Q +IK+I DM M R+L Sbjct: 579 LLKLYAERSQQKGFSFSPDDDLQRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLV 638 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQHYE K +N + V++++ Sbjct: 639 GDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYENFKARFENYPVEVDVLSRFR 698 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + + LER+ GQ IIIGTH L + + L L+++DE+ RFGV+ + L + T Sbjct: 699 SKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKT 758 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N + E I R Sbjct: 759 KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIR--- 815 Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 + G + +++ +++ +KK + + +V +SI +HG+MS+I E+ + Sbjct: 816 EMDRGGQVFYVYNKVDTIDKKVAELQELVPE---------ASIGFVHGQMSEIQLENTLI 866 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F NG +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR I+ L+ Sbjct: 867 DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926 Query: 596 YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 Y P L++ S RL +K TE GF IA DL R G ILG QSG + E Sbjct: 927 YRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 984 Query: 651 LHDSLLE--IARKDAKHILTQ 669 ++ LLE IA K K + Q Sbjct: 985 MYSQLLEQAIASKQGKTTVRQ 1005 >gi|325686483|gb|EGD28512.1| transcription-repair coupling factor [Streptococcus sanguinis SK72] Length = 1167 Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 156/439 (35%), Positives = 240/439 (54%), Gaps = 28/439 (6%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 I L R Q K G + + ++ + P+ T+ Q +I+++ +DM M R+ Sbjct: 584 IKLYAERSQLK---GFAFSADDSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRPMDRL 640 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 L GDVG GKT VA+ A AV Q ++ P +LAQQHY K+ + + VE+++ Sbjct: 641 LVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYTNFKERFNDFAVNVEVLSR 700 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 +A +++ LE++ GQ IIIGTH L +++ L L+I+DE+ RFGV+ + L + Sbjct: 701 FRSKAEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFADLGLIIIDEEQRFGVKHKETLKEL 760 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL 475 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N I E + R Sbjct: 761 KKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLR- 819 Query: 476 KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 + G + Y++ +++ E+K S R ++ SI +HG+MS+I E+ Sbjct: 820 --EIDRGGQVYYLYNKVDTIEQKVSELRELIPEV---------SIGYVHGQMSEIRLENT 868 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 + F NG +L+ TT+IE G+D+ +A+ + +ENA+H GL+ L+QLRGRVGR I+ Sbjct: 869 LLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGLSTLYQLRGRVGRSNRIAYAY 928 Query: 594 LLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648 L+Y P L++ S RL +K TE GF IA DL R G ILG QSG + Sbjct: 929 LMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGSMQSGFIDSV--G 986 Query: 649 PELHDSLLE--IARKDAKH 665 E++ LLE IA+K + Sbjct: 987 FEMYSQLLEEAIAKKQGRE 1005 >gi|324991860|gb|EGC23783.1| transcription-repair coupling factor [Streptococcus sanguinis SK405] gi|324996250|gb|EGC28160.1| transcription-repair coupling factor [Streptococcus sanguinis SK678] gi|325698026|gb|EGD39907.1| transcription-repair coupling factor [Streptococcus sanguinis SK160] gi|327458484|gb|EGF04834.1| transcription-repair coupling factor [Streptococcus sanguinis SK1] gi|327490344|gb|EGF22131.1| transcription-repair coupling factor [Streptococcus sanguinis SK1058] Length = 1167 Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 156/439 (35%), Positives = 240/439 (54%), Gaps = 28/439 (6%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 I L R Q K G + + ++ + P+ T+ Q +I+++ +DM M R+ Sbjct: 584 IKLYAERSQLK---GFAFSADDSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRPMDRL 640 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 L GDVG GKT VA+ A AV Q ++ P +LAQQHY K+ + + VE+++ Sbjct: 641 LVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYTNFKERFNDFAVNVEVLSR 700 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 +A +++ LE++ GQ IIIGTH L +++ L L+I+DE+ RFGV+ + L + Sbjct: 701 FRSKAEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFADLGLIIIDEEQRFGVKHKETLKEL 760 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL 475 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N I E + R Sbjct: 761 KKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLR- 819 Query: 476 KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 + G + Y++ +++ E+K S R ++ SI +HG+MS+I E+ Sbjct: 820 --EIDRGGQVYYLYNKVDTIEQKVSELRELIPEV---------SIGYVHGQMSEIRLENT 868 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 + F NG +L+ TT+IE G+D+ +A+ + +ENA+H GL+ L+QLRGRVGR I+ Sbjct: 869 LLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGLSTLYQLRGRVGRSNRIAYAY 928 Query: 594 LLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648 L+Y P L++ S RL +K TE GF IA DL R G ILG QSG + Sbjct: 929 LMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGSMQSGFIDSV--G 986 Query: 649 PELHDSLLE--IARKDAKH 665 E++ LLE IA+K + Sbjct: 987 FEMYSQLLEEAIAKKQGRE 1005 >gi|323126266|gb|ADX23563.1| Transcription-repair coupling factor [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 1166 Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 157/441 (35%), Positives = 240/441 (54%), Gaps = 25/441 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + + ++ G + + + + + F T+ Q +IK+I DM M R+L Sbjct: 579 LLKLYAERSQQKGFSFSPDDDLQRAFDDDFTFVETEDQLRSIKEIKADMESMQPMDRLLV 638 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQHYE K +N + V++++ Sbjct: 639 GDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYENFKARFENYPVEVDVLSRFR 698 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + + LER+ GQ IIIGTH L + + L L+++DE+ RFGV+ + L + T Sbjct: 699 SKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKT 758 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N + E I R Sbjct: 759 KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIR--- 815 Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 + G + +++ +++ +KK + + +V +SI +HG+MS+I E+ + Sbjct: 816 EMDRGGQVFYVYNKVDTIDKKVAELQELVPE---------ASIGFVHGQMSEIQLENTLI 866 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F NG +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR I+ L+ Sbjct: 867 DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926 Query: 596 YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 Y P L++ S RL +K TE GF IA DL R G ILG QSG + E Sbjct: 927 YRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 984 Query: 651 LHDSLLE--IARKDAKHILTQ 669 ++ LLE IA K K + Q Sbjct: 985 MYSQLLEQAIASKQGKTTVRQ 1005 >gi|311063752|ref|YP_003970477.1| ATP-dependent DNA helicase RecG [Bifidobacterium bifidum PRL2010] gi|310866071|gb|ADP35440.1| RecG ATP-dependent DNA helicase [Bifidobacterium bifidum PRL2010] Length = 894 Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 196/615 (31%), Positives = 281/615 (45%), Gaps = 133/615 (21%) Query: 184 VLPEWIEKD--LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 VLPE + + LL + AEAF IH+P DF+ A + Y+E Q ALL Sbjct: 268 VLPESVRESNHLLHR------AEAFLAIHDPLNTADFKR---AIGTMRYEEAFVSQTALL 318 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 R +K+ +P + + + ++PF T Q I DI DM+++ M R+LQG+ Sbjct: 319 QSRSNVRKDAALPC-AGVALRDRFIESLPFPLTGGQREIIDDIGVDMAREYPMQRLLQGE 377 Query: 302 V----------------GSG-----------------KTLVALIAMAAAVEAG------- 321 V GSG T+ A++ VE G Sbjct: 378 VGSGKTVVAVAAMLQAAGSGHQAVLVAPTQVLAEQHHATISAMLCAIDGVETGDDPSRDA 437 Query: 322 -----------------------GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITG 357 G+ + P+ + + NT+ + V ++TG Sbjct: 438 LSPNDPADLIKAAESAADDGDAKGRTAVKHPVKHSGARRGKQDGAAHANTRHVPVILLTG 497 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQ 416 M A RR+AL A G II+ THA F + Q L LV++DEQHRFGV+QR L T+ Sbjct: 498 GMKLAARRRALALAASGDPCIIVATHAAFSKTFQAPNLALVVIDEQHRFGVEQRESLRTK 557 Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIE 473 PH+L+MTATPIPRT +T GD+DIS +TE P GRKPI+T I+P + + + Sbjct: 558 NDVVPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRTFIVPEDDGRMMGSMFA 617 Query: 474 RLKVVLSEGKKAYWICPQI----------------------------------------- 492 ++ + G++AY +CP+I Sbjct: 618 HIRGRIDAGERAYVVCPRIDADDESDGDDDTSGASQIGVYDDSDAYRRESAAAAANTAAS 677 Query: 493 ----EEKKESNFR----SVVE---RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541 E+ + R SV E R +SL + A + GR D K+ VM F +G Sbjct: 678 APSQEDGDGAPSRPPLHSVAEIERRLSSLPQFRGVRFATLTGRDDDATKQQVMADFADGA 737 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L+ATTVIEVG+DV AS I+I +A+ +GL+QLHQLRGRVGRG S L+ Sbjct: 738 TPVLVATTVIEVGVDVPQASCIVIFDADRYGLSQLHQLRGRVGRGGTDSWAFLISRAEDG 797 Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660 + RL V++ T DG IA+ DL+ R G++LG QSG L + D ++ AR Sbjct: 798 GPAQQRLQVIQGTLDGAQIAQADLEFRGAGDVLGDAQSGGKSGLKLLRVVKDVKIIADAR 857 Query: 661 KDAKHILTQDPDLTS 675 + A +L DPDL+ Sbjct: 858 ERAGRLLADDPDLSG 872 >gi|195977163|ref|YP_002122407.1| transcription-repair coupling factor [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195973868|gb|ACG61394.1| transcription-repair coupling factor [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 1164 Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 147/411 (35%), Positives = 230/411 (55%), Gaps = 21/411 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + + ++ G + + ++ + + F T Q +IK++ +DM M R+L Sbjct: 579 LLKLYAERSQQKGFQFSPDDELQKAFEEDFAFVETDDQLRSIKEVKKDMESVRPMDRLLV 638 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A A+ Q I+ P +LAQQHYE ++ +N + +++++ Sbjct: 639 GDVGFGKTEVAMRAAFKAIGDHKQVAILVPTTVLAQQHYENFRERFENYPVEIDVLSRFR 698 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + ++LER+ GQ IIIGTH L + + L L+++DE+ RFGV+ + L + T Sbjct: 699 SKKEQAESLERLKKGQVDIIIGTHRLLSKDVIFSDLGLIVIDEEQRFGVKHKETLKELKT 758 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N I E I R Sbjct: 759 KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLIREAIIR--- 815 Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 + G + +++ +++ +KK + + +V +SI +HG+MSDI E+ + Sbjct: 816 EMDRGGQVFYVYNKVDTIDKKVAELQELVPE---------ASIGFVHGQMSDIQLENTLM 866 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F NG +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR I+ L+ Sbjct: 867 DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926 Query: 596 YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGM 641 Y P L++ S RL +K TE GF IA DL R G ILG QSG Sbjct: 927 YKPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGF 977 >gi|145630886|ref|ZP_01786663.1| transcription-repair coupling factor [Haemophilus influenzae R3021] gi|144983546|gb|EDJ91014.1| transcription-repair coupling factor [Haemophilus influenzae R3021] Length = 427 Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 222/386 (57%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ F T QE AI ++ DM Q M R++ GDVG GKT VA+ A AV Sbjct: 28 QQFAATFSFEETYDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHK 87 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHYE K N + VE+++ +++ LE +A G+ I+IGT Sbjct: 88 QVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFKTAKEQKQILENLAEGKVDILIGT 147 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+I+DE+HRFGV Q+ K+ Q +L +TATPIPRTL + G Sbjct: 148 HKLIQSDVKFSDLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGI 207 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I+ PA R IKT + + D+++ R + +L E G + Y++ + ++ Sbjct: 208 RDLSIISTPPARRLSIKTF---VRQNDDLVVR-EAILREILRGGQVYYLHNDV-----AS 258 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + E+ +L + + + HG+M + + E VM F + +L+ +T+IE GIDV Sbjct: 259 IENTAEKLTALVPE--ARVIVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPT 316 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL PP ++K++ RL L+N ++ Sbjct: 317 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKMMTKDAERRLDALENLDNL 376 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF++A DL+ R GE+LG +QSG Sbjct: 377 GAGFILATHDLEIRGAGELLGNEQSG 402 >gi|24378538|ref|NP_720493.1| putative transcription-repair coupling factor [Streptococcus mutans UA159] gi|24376386|gb|AAN57799.1|AE014853_6 putative transcription-repair coupling factor [Streptococcus mutans UA159] Length = 1162 Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 149/413 (36%), Positives = 228/413 (55%), Gaps = 24/413 (5%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 + L R Q K G + + K ++ + + T+ Q +IK++ +DM + M R+ Sbjct: 580 LKLYAERSQLK---GFAFSPDDKNQEEFDNDFAYVETEDQLRSIKEVKKDMEKDQPMDRL 636 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 L GDVG GKT VA+ A AV Q ++ P +LAQQHY K+ +N + V +++ Sbjct: 637 LVGDVGFGKTEVAMRAAFKAVNDDKQVAVLVPTTVLAQQHYNTFKERFENFPVNVAMMSR 696 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 + + + L ++A GQ IIIGTH L + + L L+++DE+ RFGV+ + L + Sbjct: 697 FKTKTEQSETLTKLAKGQVDIIIGTHRLLSKDVTFKDLGLLVIDEEQRFGVKHKETLKEL 756 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERL 475 T VL +TATPIPRTL ++ LG D+S I P+ R P++T ++ N I E I R Sbjct: 757 KTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPSNRYPVQTYVMETNASVIREAIMR- 815 Query: 476 KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 + G + ++I +++ +KK + R ++ N I +HG+MS+I E+ Sbjct: 816 --EIDRGGQIFYIYNRVDTIDKKVAELRELIPEAN---------IGFVHGKMSEIQLENT 864 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 + F +G LL+ TT+IE GID+ + + + IENA++ GL+ L+QLRGRVGR I+ Sbjct: 865 LLDFISGEYDLLVTTTIIETGIDISNVNTLFIENADYMGLSTLYQLRGRVGRSNRIAYAY 924 Query: 594 LLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGM 641 L+YHP L++ S RL +K TE GF IA DL R G ILG QSG Sbjct: 925 LMYHPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGSSQSGF 977 >gi|332364170|gb|EGJ41947.1| transcription-repair coupling factor [Streptococcus sanguinis SK49] Length = 1167 Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 155/438 (35%), Positives = 241/438 (55%), Gaps = 28/438 (6%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 I L R Q K G + + ++ + P+ T+ Q +I+++ +DM M R+ Sbjct: 584 IKLYAERSQLK---GFAFSADDSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRPMDRL 640 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 L GDVG GKT VA+ A AV Q ++ P +LAQQHY K+ + + VE+++ Sbjct: 641 LVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYTNFKERFNDFAVNVEVLSR 700 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 ++ +++ LE++ GQ IIIGTH L +++ L L+I+DE+ RFGV+ + L + Sbjct: 701 FRSKSEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFADLGLIIIDEEQRFGVKHKETLKEL 760 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL 475 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N I E + R Sbjct: 761 KKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLR- 819 Query: 476 KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 + G + Y++ +++ E+K S R ++ +SI +HG+MS+I E+ Sbjct: 820 --EIDRGGQVYYLYNKVDTIEQKVSELRELIPE---------ASIGYVHGQMSEIRLENT 868 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 + F NG +L+ TT+IE G+D+ +A+ + +ENA+H GL+ L+QLRGRVGR I+ Sbjct: 869 LLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGLSTLYQLRGRVGRSNRIAYAY 928 Query: 594 LLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648 L+Y P L++ S RL +K TE GF IA DL R G ILG QSG + Sbjct: 929 LMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGSMQSGFIDSV--G 986 Query: 649 PELHDSLLE--IARKDAK 664 E++ LLE IA+K + Sbjct: 987 FEMYSQLLEEAIAKKQGR 1004 >gi|307261826|ref|ZP_07543490.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868443|gb|EFN00256.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 1149 Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 149/380 (39%), Positives = 218/380 (57%), Gaps = 19/380 (5%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 PF T+ Q++AI ++ DM M R++ GDVG GKT VA+ A AVE Q ++ Sbjct: 603 FPFEETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVENHKQVAVLV 662 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQH+E K N I VE+++ ++ LE++A G+ I++GTH L Q+ Sbjct: 663 PTTLLAQQHFENFKDRFANYPINVEVLSRFKTAKEQKAILEKVAEGKVDILVGTHKLLQE 722 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 +Q+ L L+I+DE+HRFGV+Q+ K+ Q +L +TATPIPRTL + G D+S I Sbjct: 723 DVQFRDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLSVI 782 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505 PA R IKT + + D++I + + +L E G + Y++ + + + Sbjct: 783 ASPPARRLTIKTF---VRQHDDLIVK-EAILREILRGGQVYYLHNDV-----ATIENCAT 833 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L + I I HG+M + + E VM F + LL+ +T+IE GIDV A+ III Sbjct: 834 KLAELVPE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIII 891 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL---SVLKNTEDGFLI 620 E A+ FGLAQLHQLRGRVGR + LL PP L+K++ RL S + N GF++ Sbjct: 892 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKALTKDAQQRLEAISSIDNLGAGFVL 951 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG +QSG Sbjct: 952 ATHDLEIRGAGELLGAEQSG 971 >gi|303253501|ref|ZP_07339640.1| transcription-repair coupling factor [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248372|ref|ZP_07530395.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302647611|gb|EFL77828.1| transcription-repair coupling factor [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855110|gb|EFM87290.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 1149 Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 149/380 (39%), Positives = 218/380 (57%), Gaps = 19/380 (5%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 PF T+ Q++AI ++ DM M R++ GDVG GKT VA+ A AVE Q ++ Sbjct: 603 FPFEETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVENHKQVAVLV 662 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQH+E K N I VE+++ ++ LE++A G+ I++GTH L Q+ Sbjct: 663 PTTLLAQQHFENFKDRFANYPINVEVLSRFKTAKEQKAILEKVAEGKVDILVGTHKLLQE 722 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 +Q+ L L+I+DE+HRFGV+Q+ K+ Q +L +TATPIPRTL + G D+S I Sbjct: 723 DVQFRDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLSVI 782 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505 PA R IKT + + D++I + + +L E G + Y++ + + + Sbjct: 783 ASPPARRLTIKTF---VRQHDDLIVK-EAILREILRGGQVYYLHNDV-----ATIENCAT 833 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L + I I HG+M + + E VM F + LL+ +T+IE GIDV A+ III Sbjct: 834 KLAELVPE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIII 891 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL---SVLKNTEDGFLI 620 E A+ FGLAQLHQLRGRVGR + LL PP L+K++ RL S + N GF++ Sbjct: 892 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKALTKDAQQRLEAISSIDNLGAGFVL 951 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG +QSG Sbjct: 952 ATHDLEIRGAGELLGAEQSG 971 >gi|307257406|ref|ZP_07539175.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864058|gb|EFM95972.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 1149 Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 149/380 (39%), Positives = 218/380 (57%), Gaps = 19/380 (5%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 PF T+ Q++AI ++ DM M R++ GDVG GKT VA+ A AVE Q ++ Sbjct: 603 FPFEETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVENHKQVAVLV 662 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQH+E K N I VE+++ ++ LE++A G+ I++GTH L Q+ Sbjct: 663 PTTLLAQQHFENFKDRFANYPINVEVLSRFKTAKEQKAILEKVAEGKVDILVGTHKLLQE 722 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 +Q+ L L+I+DE+HRFGV+Q+ K+ Q +L +TATPIPRTL + G D+S I Sbjct: 723 DVQFRDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLSVI 782 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505 PA R IKT + + D++I + + +L E G + Y++ + + + Sbjct: 783 ASPPARRLTIKTF---VRQHDDLIVK-EAILREILRGGQVYYLHNDV-----ATIENCAT 833 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L + I I HG+M + + E VM F + LL+ +T+IE GIDV A+ III Sbjct: 834 KLAELVPE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIII 891 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL---SVLKNTEDGFLI 620 E A+ FGLAQLHQLRGRVGR + LL PP L+K++ RL S + N GF++ Sbjct: 892 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKALTKDAQQRLEAISSIDNLGAGFVL 951 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG +QSG Sbjct: 952 ATHDLEIRGAGELLGAEQSG 971 >gi|307246259|ref|ZP_07528340.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255243|ref|ZP_07537058.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259678|ref|ZP_07541401.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852868|gb|EFM85092.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861792|gb|EFM93771.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866218|gb|EFM98083.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 1149 Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 149/380 (39%), Positives = 218/380 (57%), Gaps = 19/380 (5%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 PF T+ Q++AI ++ DM M R++ GDVG GKT VA+ A AVE Q ++ Sbjct: 603 FPFEETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVENHKQVAVLV 662 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQH+E K N I VE+++ ++ LE++A G+ I++GTH L Q+ Sbjct: 663 PTTLLAQQHFENFKDRFANYPINVEVLSRFKTAKEQKAILEKVAEGKVDILVGTHKLLQE 722 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 +Q+ L L+I+DE+HRFGV+Q+ K+ Q +L +TATPIPRTL + G D+S I Sbjct: 723 DVQFRDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLSVI 782 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505 PA R IKT + + D++I + + +L E G + Y++ + + + Sbjct: 783 ASPPARRLTIKTF---VRQHDDLIVK-EAILREILRGGQVYYLHNDV-----ATIENCAT 833 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L + I I HG+M + + E VM F + LL+ +T+IE GIDV A+ III Sbjct: 834 KLAELVPE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIII 891 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL---SVLKNTEDGFLI 620 E A+ FGLAQLHQLRGRVGR + LL PP L+K++ RL S + N GF++ Sbjct: 892 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKALTKDAQQRLEAISSIDNLGAGFVL 951 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG +QSG Sbjct: 952 ATHDLEIRGAGELLGAEQSG 971 >gi|332141064|ref|YP_004426802.1| transcription-repair coupling factor [Alteromonas macleodii str. 'Deep ecotype'] gi|327551086|gb|AEA97804.1| transcription-repair coupling factor [Alteromonas macleodii str. 'Deep ecotype'] Length = 1165 Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 161/428 (37%), Positives = 230/428 (53%), Gaps = 19/428 (4%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 WT ++ +A ++ + R+ K IN + Q + PF T Q Sbjct: 568 WTKAKQKAAEKVRDVAAELLDVYARRAAKPGFEYKINWDDY--QAFADSFPFEETPDQAQ 625 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI ++ DM + M R++ GDVG GKT VA+ A A AG Q I+ P +LAQQHYE Sbjct: 626 AIAAVMHDMGSPSAMDRLVCGDVGFGKTEVAMRAAFLAANAGKQVAILVPTTLLAQQHYE 685 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 K +E+++ + ++ +ERI G+ I++GTH L I+Y L LVI Sbjct: 686 NFKDRFAAWPFEIEVMSRFVSGKAQKSVVERIGEGKVDIVVGTHKLLSSDIKYKDLGLVI 745 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 +DE+HRFGV+Q+ KL +L +TATPIPRTL + G D+S I PA R IK Sbjct: 746 IDEEHRFGVRQKEKLKSLRADVDILTLTATPIPRTLNMALSGMRDLSIIATAPARRLSIK 805 Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517 T + N+ I E I R + G + Y++ ++ ES R+V E + E + Sbjct: 806 TFVQQRNKAVIREAIMR---EILRGGQVYFLHNEV----ESIARTVEEIAEIVPE---AR 855 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 IA+ HG+M + + ESVM F + +L+ TT+IE GIDV A+ II++ A+H GLAQLH Sbjct: 856 IAMGHGQMRERELESVMSDFYHQRYNVLVCTTIIETGIDVPSANTIIMDRADHLGLAQLH 915 Query: 578 QLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632 QLRGRVGR + LL HP ++K++ RL + ED GF +A DL+ R GE Sbjct: 916 QLRGRVGRSHHQAYAYLLTPHPKRMTKDAVKRLEAISQLEDLGAGFALATHDLEIRGAGE 975 Query: 633 ILGIKQSG 640 +LG QSG Sbjct: 976 LLGDDQSG 983 >gi|53728955|ref|ZP_00134409.2| COG1197: Transcription-repair coupling factor (superfamily II helicase) [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208803|ref|YP_001054028.1| transcription-repair coupling factor [Actinobacillus pleuropneumoniae L20] gi|126097595|gb|ABN74423.1| transcription-repair coupling factor [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 1149 Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 149/380 (39%), Positives = 218/380 (57%), Gaps = 19/380 (5%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 PF T+ Q++AI ++ DM M R++ GDVG GKT VA+ A AVE Q ++ Sbjct: 603 FPFEETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVENHKQVAVLV 662 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQH+E K N I VE+++ ++ LE++A G+ I++GTH L Q+ Sbjct: 663 PTTLLAQQHFENFKDRFANYPINVEVLSRFKTAKEQKAILEKVAEGKVDILVGTHKLLQE 722 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 +Q+ L L+I+DE+HRFGV+Q+ K+ Q +L +TATPIPRTL + G D+S I Sbjct: 723 DVQFRDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLSVI 782 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505 PA R IKT + + D++I + + +L E G + Y++ + + + Sbjct: 783 ASPPARRLTIKTF---VRQHDDLIVK-EAILREILRGGQVYYLHNDV-----ATIENCAT 833 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L + I I HG+M + + E VM F + LL+ +T+IE GIDV A+ III Sbjct: 834 KLAELVPE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIII 891 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL---SVLKNTEDGFLI 620 E A+ FGLAQLHQLRGRVGR + LL PP L+K++ RL S + N GF++ Sbjct: 892 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKALTKDAQQRLEAISSIDNLGAGFVL 951 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG +QSG Sbjct: 952 ATHDLEIRGAGELLGAEQSG 971 >gi|88860092|ref|ZP_01134731.1| transcription-repair ATP-dependent coupling factor [Pseudoalteromonas tunicata D2] gi|88818086|gb|EAR27902.1| transcription-repair ATP-dependent coupling factor [Pseudoalteromonas tunicata D2] Length = 1157 Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 156/411 (37%), Positives = 228/411 (55%), Gaps = 23/411 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + + K ++G + K ++ + PF T+ Q++AI +L DM M R++ Sbjct: 577 LLDIYAKRKIKLGNAFRHDKKAYRQFVDTFPFEETEDQKNAISAVLTDMQSPQAMDRLVC 636 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV G Q I+ P +LAQQH+E K N + VE+++ Sbjct: 637 GDVGFGKTEVAMRAAFVAVNEGKQVAILVPTTLLAQQHFENFKDRFANIAVEVEVLSRFK 696 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + LE++A+GQ I+IGTH L Q SI++ L L+IVDE+HRFGV+Q+ K+ Sbjct: 697 TTKEQNVVLEKLANGQVDIVIGTHKLIQPSIKFKDLGLLIVDEEHRFGVRQKEKIKSLRA 756 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I PA R +KT + R E + + +L Sbjct: 757 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFV----RKGEDDLKREAIL 812 Query: 480 SE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534 E G + Y++ +E EK ++ +V +SI HG+M + + E +M Sbjct: 813 REIKRGGQVYYLHNNVETIEKVAADLAVLVPE---------ASITTAHGQMRESELEHLM 863 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F + +L+ TT+IE GIDV A+ III+ A+ GLAQLHQLRGRVGR + L Sbjct: 864 AEFYHKKYNVLVCTTIIETGIDVPTANTIIIDRADKLGLAQLHQLRGRVGRSHHQAYAYL 923 Query: 595 LYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 L P +SK++ RL +++ ED GF +A DL+ R GE+LG QSG Sbjct: 924 LIPDPKGISKDATKRLEAIESLEDLGAGFALATHDLEIRGAGELLGDDQSG 974 >gi|328945180|gb|EGG39335.1| transcription-repair coupling factor [Streptococcus sanguinis SK1087] Length = 1167 Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 157/439 (35%), Positives = 242/439 (55%), Gaps = 28/439 (6%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 I L R Q K G + + ++ + P+ T+ Q +I+++ +DM M R+ Sbjct: 584 IKLYAERSQLK---GFAFSADDSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRPMDRL 640 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 L GDVG GKT VA+ A AV Q ++ P +LAQQHY K+ + + VE+++ Sbjct: 641 LVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYTNFKERFNDFAVNVEVLSR 700 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 +A +++ LE++ GQ IIIGTH L +++ L L+I+DE+ RFGV+ + KL + Sbjct: 701 FRSKAEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFADLGLIIIDEEQRFGVKHKEKLKEL 760 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL 475 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N I E + R Sbjct: 761 KKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLR- 819 Query: 476 KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 + G + Y++ +++ E+K S R ++ +SI +HG+MS+I E+ Sbjct: 820 --EIDRGGQVYYLYNKVDTIEQKVSELRELIPE---------ASIGYVHGQMSEIRLENT 868 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 + F NG +L+ TT+IE G+D+ +A+ + +ENA+H GL+ L+QLRGRVGR I+ Sbjct: 869 LLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGLSTLYQLRGRVGRSNRIAYAY 928 Query: 594 LLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648 L+Y P L++ S RL +K TE GF IA DL R G ILG QSG + Sbjct: 929 LMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGSMQSGFIDSV--G 986 Query: 649 PELHDSLLE--IARKDAKH 665 E++ LLE IA+K + Sbjct: 987 FEMYSQLLEEAIAKKQGRE 1005 >gi|317047729|ref|YP_004115377.1| transcription-repair coupling factor [Pantoea sp. At-9b] gi|316949346|gb|ADU68821.1| transcription-repair coupling factor [Pantoea sp. At-9b] Length = 1147 Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 150/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 591 QLFCEGFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENSK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N I +E+++ + + LE+ A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPIRIEMLSRFRSAKEQNQVLEQAAEGKVDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L ++++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLMSDLKWHDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREVLRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 +R L + IAI HG+M + D E VM+ F + +L+ TT+IE GIDV Sbjct: 822 IEKAAQRLAELVPE--ARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDVPS 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEDQSG 965 >gi|307264008|ref|ZP_07545608.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306870619|gb|EFN02363.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 1149 Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 149/380 (39%), Positives = 218/380 (57%), Gaps = 19/380 (5%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 PF T+ Q++AI ++ DM M R++ GDVG GKT VA+ A AVE Q ++ Sbjct: 603 FPFEETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVENHKQVAVLV 662 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQH+E K N I VE+++ ++ LE++A G+ I++GTH L Q+ Sbjct: 663 PTTLLAQQHFENFKDRFANYPINVEVLSRFKTAKEQKAILEKVAEGKVDILVGTHKLLQE 722 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 +Q+ L L+I+DE+HRFGV+Q+ K+ Q +L +TATPIPRTL + G D+S I Sbjct: 723 DVQFRDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLSVI 782 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505 PA R IKT + + D++I + + +L E G + Y++ + + + Sbjct: 783 ASPPARRLTIKTF---VRQHDDLIVK-EAILREILRGGQVYYLHNDV-----ATIENCAT 833 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L + I I HG+M + + E VM F + LL+ +T+IE GIDV A+ III Sbjct: 834 KLAELVPE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIII 891 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL---SVLKNTEDGFLI 620 E A+ FGLAQLHQLRGRVGR + LL PP L+K++ RL S + N GF++ Sbjct: 892 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKALTKDAQQRLEAISSIDNLGAGFVL 951 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG +QSG Sbjct: 952 ATHDLEIRGAGELLGAEQSG 971 >gi|165976764|ref|YP_001652357.1| transcription repair coupling factor [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876865|gb|ABY69913.1| transcription repair coupling factor [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 1149 Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 149/380 (39%), Positives = 218/380 (57%), Gaps = 19/380 (5%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 PF T+ Q++AI ++ DM M R++ GDVG GKT VA+ A AVE Q ++ Sbjct: 603 FPFEETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVENHKQVAVLV 662 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQH+E K N I VE+++ ++ LE++A G+ I++GTH L Q+ Sbjct: 663 PTTLLAQQHFENFKDRFANYPINVEVLSRFKTAKEQKAILEKVAEGKVDILVGTHKLLQE 722 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 +Q+ L L+I+DE+HRFGV+Q+ K+ Q +L +TATPIPRTL + G D+S I Sbjct: 723 DVQFRDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLSVI 782 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505 PA R IKT + + D++I + + +L E G + Y++ + + + Sbjct: 783 ASPPARRLTIKTF---VRQHDDLIVK-EAILREILRGGQVYYLHNDV-----ATIENCAT 833 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L + I I HG+M + + E VM F + LL+ +T+IE GIDV A+ III Sbjct: 834 KLAELVPE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIII 891 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL---SVLKNTEDGFLI 620 E A+ FGLAQLHQLRGRVGR + LL PP L+K++ RL S + N GF++ Sbjct: 892 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKALTKDAQQRLEAISSIDNLGAGFVL 951 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG +QSG Sbjct: 952 ATHDLEIRGAGELLGAEQSG 971 >gi|290579532|ref|YP_003483924.1| putative transcription-repair coupling factor [Streptococcus mutans NN2025] gi|254996431|dbj|BAH87032.1| putative transcription-repair coupling factor [Streptococcus mutans NN2025] Length = 1162 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 145/399 (36%), Positives = 224/399 (56%), Gaps = 21/399 (5%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G + + K ++ + + T+ Q +IK++ +DM + M R+L GDVG GKT VA+ Sbjct: 591 GFAFSPDDKNQEEFDNDFAYVETEDQLRSIKEVKKDMEKDQPMDRLLVGDVGFGKTEVAM 650 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A AV Q ++ P +LAQQHY K+ +N + V +++ + + + L ++ Sbjct: 651 RAAFKAVNDDKQVAVLVPTTVLAQQHYNTFKERFENFPVNVAMMSRFKTKTEQSETLTKL 710 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 A GQ IIIGTH L + + +L L+++DE+ RFGV+ + L + T VL +TATPI Sbjct: 711 AKGQVDIIIGTHRLLSKDVTFKELGLLVIDEEQRFGVKHKETLKELKTKVDVLTLTATPI 770 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWIC 489 PRTL ++ LG D+S I P+ R P++T ++ N I E I R + G + ++I Sbjct: 771 PRTLHMSMLGIRDLSVIETPPSNRYPVQTYVMETNASVIREAIMR---EIDRGGQIFYIY 827 Query: 490 PQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 +++ +KK + R ++ N I +HG+MS+I E+ + F +G LL+ Sbjct: 828 NRVDTIDKKVAELRELIPEAN---------IGFVHGKMSEIQLENTLLDFISGEYDLLVT 878 Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSY 605 TT+IE GID+ + + + IENA++ GL+ L+QLRGRVGR I+ L+YHP L++ S Sbjct: 879 TTIIETGIDISNVNTLFIENADYMGLSTLYQLRGRVGRSNRIAYAYLMYHPDKILTEVSE 938 Query: 606 TRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGM 641 RL +K TE GF IA DL R G ILG QSG Sbjct: 939 KRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGSSQSGF 977 >gi|307250599|ref|ZP_07532540.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857340|gb|EFM89455.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 1149 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 149/380 (39%), Positives = 218/380 (57%), Gaps = 19/380 (5%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 PF T+ Q++AI ++ DM M R++ GDVG GKT VA+ A AVE Q ++ Sbjct: 603 FPFEETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVENHKQVAVLV 662 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQH+E K N I VE+++ ++ LE++A G+ I++GTH L Q+ Sbjct: 663 PTTLLAQQHFENFKDRFANYPINVEVLSRFKTAKEQKAILEKVAEGKVDILVGTHKLLQE 722 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 +Q+ L L+I+DE+HRFGV+Q+ K+ Q +L +TATPIPRTL + G D+S I Sbjct: 723 DVQFRDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLSVI 782 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505 PA R IKT + + D++I + + +L E G + Y++ + + + Sbjct: 783 ASPPARRLTIKTF---VRQHDDLIVK-EAILREILRGGQVYYLHNDV-----ATIENCAT 833 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L + I I HG+M + + E VM F + LL+ +T+IE GIDV A+ III Sbjct: 834 KLAELVPE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIII 891 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL---SVLKNTEDGFLI 620 E A+ FGLAQLHQLRGRVGR + LL PP L+K++ RL S + N GF++ Sbjct: 892 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKALTKDAQQRLEAISSIDNLGAGFVL 951 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG +QSG Sbjct: 952 ATHDLEIRGAGELLGAEQSG 971 >gi|297622390|ref|YP_003703824.1| transcription-repair coupling factor [Truepera radiovictrix DSM 17093] gi|297163570|gb|ADI13281.1| transcription-repair coupling factor [Truepera radiovictrix DSM 17093] Length = 1006 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 157/433 (36%), Positives = 240/433 (55%), Gaps = 29/433 (6%) Query: 219 EWTSPARERLAYDELLAGQIALLLMR----KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274 EW ARER + A ++AL L+R +Q ++ + +P N E I N PF T Sbjct: 421 EWAR-ARERA---RVGAQELALKLIRTYAERQLQQGLAMPANPEWD--PLIDENCPFELT 474 Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334 Q+SA + +L DM++ M R++ GDVG GKT VA+ A AV G Q ++ P +LA Sbjct: 475 PDQKSATQAVLHDMARPVPMDRLISGDVGFGKTEVAIRAAHRAVGHGKQVAMLVPTTVLA 534 Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394 +QH+E + ++VE+++ R L + G ++IGTH L + + + Sbjct: 535 KQHFETFAERFAGLPVVVELLSRFSTDKEARDILAGLKAGTIDVVIGTHRLLSEEVAFKD 594 Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454 L L+IVDE+HRFGV Q+ ++ VL ++ATPIPRTL ++ +G D+S+I PAG Sbjct: 595 LGLLIVDEEHRFGVGQKERMKAMKANLDVLSLSATPIPRTLYMSLVGLRDVSQIMTPPAG 654 Query: 455 RKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEE--KKESNFRSVVERFNSL 510 RKPI+TV+ P D ++ R V+ L G K ++I ++ K + +V Sbjct: 655 RKPIQTVLQP---FDPMVAREAVMFELERGGKVFYIHDRVGSMGAKALWLQKLVPE---- 707 Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 + I + HG+MS + E VM +F+ G +L+ATT++E G+DV A+ ++IE A+ Sbjct: 708 -----ARIGVAHGQMSGDELEEVMLNFQGGAYDVLLATTIVESGLDVAGANTLLIERADK 762 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627 GLAQL+QLRGRVGR + LLY L++ + RL L D G L+AE+D++ Sbjct: 763 LGLAQLYQLRGRVGRRSTEAWAYLLYPGRLTEGAQRRLFALAELNDLGSGHLLAEKDMEI 822 Query: 628 RKEGEILGIKQSG 640 R G +LG +Q G Sbjct: 823 RGVGNLLGPEQHG 835 >gi|227357767|ref|ZP_03842116.1| transcription-repair coupling factor [Proteus mirabilis ATCC 29906] gi|227162096|gb|EEI47110.1| transcription-repair coupling factor [Proteus mirabilis ATCC 29906] Length = 1151 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 149/382 (39%), Positives = 217/382 (56%), Gaps = 19/382 (4%) Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 ++ PF T QE AI +L DM Q M R++ GDVG GKT VA+ A A+ Q I Sbjct: 594 QSFPFETTPDQEMAINAVLSDMCQAIAMDRLVCGDVGFGKTEVAMRAAFLAISNNKQVAI 653 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 + P +LAQQH+E + N + +E+I+ +++ E++A G I+IGTH L Sbjct: 654 LVPTTLLAQQHFENFRDRFANWPVNIEMISRFRSAKEQQQITEKLAEGTIDIVIGTHKLL 713 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 Q IQ+ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G D+S Sbjct: 714 QPGIQWKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLS 773 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSV 503 I PA R +KT + D+++ R + +L E G + Y++ +E N Sbjct: 774 IIATPPARRLSVKTF---VREYDDLVVR-EAILRETLRGGQVYYLYNDVE-----NIEKA 824 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 +R L + I I HG+M + + E VM+ F + +L+ TT+IE GID+ A+ I Sbjct: 825 RDRLAQLVPE--ARIGIGHGQMRERELERVMNDFHHQRFNVLLCTTIIETGIDIPSANTI 882 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GF 618 IIE A+HFGLAQLHQLRGRVGR + LL HP ++K+++ RL + + ED GF Sbjct: 883 IIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAHKRLEAIASLEDLGAGF 942 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG +QSG Sbjct: 943 ALATHDLEIRGAGELLGEEQSG 964 >gi|197284762|ref|YP_002150634.1| transcription-repair coupling factor [Proteus mirabilis HI4320] gi|194682249|emb|CAR41979.1| transcription-repair coupling factor [Proteus mirabilis HI4320] Length = 1151 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 149/382 (39%), Positives = 217/382 (56%), Gaps = 19/382 (4%) Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 ++ PF T QE AI +L DM Q M R++ GDVG GKT VA+ A A+ Q I Sbjct: 594 QSFPFETTPDQEMAINAVLSDMCQAIAMDRLVCGDVGFGKTEVAMRAAFLAISNNKQVAI 653 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 + P +LAQQH+E + N + +E+I+ +++ E++A G I+IGTH L Sbjct: 654 LVPTTLLAQQHFENFRDRFANWPVNIEMISRFRSAKEQQQITEKLAEGTIDIVIGTHKLL 713 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 Q IQ+ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G D+S Sbjct: 714 QPGIQWKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLS 773 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSV 503 I PA R +KT + D+++ R + +L E G + Y++ +E N Sbjct: 774 IIATPPARRLSVKTF---VREYDDLVVR-EAILRETLRGGQVYYLYNDVE-----NIEKA 824 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 +R L + I I HG+M + + E VM+ F + +L+ TT+IE GID+ A+ I Sbjct: 825 RDRLAQLVPE--ARIGIGHGQMRERELERVMNDFHHQRFNVLLCTTIIETGIDIPSANTI 882 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GF 618 IIE A+HFGLAQLHQLRGRVGR + LL HP ++K+++ RL + + ED GF Sbjct: 883 IIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAHKRLEAIASLEDLGAGF 942 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG +QSG Sbjct: 943 ALATHDLEIRGAGELLGEEQSG 964 >gi|94989515|ref|YP_597615.1| transcription-repair coupling factor [Streptococcus pyogenes MGAS10270] gi|94543023|gb|ABF33071.1| Transcription-repair coupling factor [Streptococcus pyogenes MGAS10270] Length = 1167 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 157/441 (35%), Positives = 240/441 (54%), Gaps = 25/441 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + + ++ G + + + + + F T+ Q +IK+I DM M R+L Sbjct: 579 LLKLYAERSQQKGFSFSPDDDLQRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLV 638 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQHY+ K +N + V++++ Sbjct: 639 GDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYKNFKARFENYPVEVDVLSRFR 698 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + + LER+ GQ IIIGTH L + + L L+++DE+ RFGV+ + L + T Sbjct: 699 SKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKT 758 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N + E I R Sbjct: 759 KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIR--- 815 Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 + G + +++ +++ EKK + + +V +SI +HG+MS+I E+ + Sbjct: 816 EMDRGGQIFYVYNKVDTIEKKVAELQELVPE---------ASIGFVHGQMSEIQLENTLI 866 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F NG +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR I+ L+ Sbjct: 867 DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926 Query: 596 YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 Y P L++ S RL +K TE GF IA DL R G ILG QSG + E Sbjct: 927 YRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 984 Query: 651 LHDSLLE--IARKDAKHILTQ 669 ++ LLE IA K K + Q Sbjct: 985 MYSQLLEQAIASKQGKTTVRQ 1005 >gi|242239055|ref|YP_002987236.1| transcription-repair coupling factor [Dickeya dadantii Ech703] gi|242131112|gb|ACS85414.1| transcription-repair coupling factor [Dickeya dadantii Ech703] Length = 1147 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 149/386 (38%), Positives = 212/386 (54%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T QE AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 589 QLFCQRFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 648 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+++ Q + + LE G+ I+IGT Sbjct: 649 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSQREQTQVLEETQEGKVDILIGT 708 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q + + L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + Sbjct: 709 HKLLQSDVHWRDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMHNI 768 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 769 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 819 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 +R L + IAI HG+M + D E VM+ F + +L+ TT+IE GID+ Sbjct: 820 IGKAAQRLGELVPE--ARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPS 877 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL P +S +++ RL + + ED Sbjct: 878 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPNPKTMSADAHKRLEAIASLEDL 937 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 938 GAGFALATHDLEIRGAGELLGEDQSG 963 >gi|325689360|gb|EGD31366.1| transcription-repair coupling factor [Streptococcus sanguinis SK115] Length = 1167 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 155/439 (35%), Positives = 241/439 (54%), Gaps = 28/439 (6%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 I L R Q K G + + ++ + P+ T+ Q +I+++ +DM M R+ Sbjct: 584 IKLYAERSQLK---GFAFSADDSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRPMDRL 640 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 L GDVG GKT VA+ A AV Q ++ P +LAQQHY K+ + + VE+++ Sbjct: 641 LVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYTNFKERFNDFAVNVEVLSR 700 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 +A +++ L+++ GQ IIIGTH L +++ L L+I+DE+ RFGV+ + L + Sbjct: 701 FRSKAEQKQTLDKLQRGQVDIIIGTHRLLSKDVEFADLGLIIIDEEQRFGVKHKETLKEL 760 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL 475 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N I E + R Sbjct: 761 KKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLR- 819 Query: 476 KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 + G + Y++ +++ E+K S R ++ +SI +HG+MS+I E+ Sbjct: 820 --EIDRGGQVYYLYNKVDTIEQKVSELRELIPE---------ASIGYVHGQMSEIRLENT 868 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 + F NG +L+ TT+IE G+D+ +A+ + +ENA+H GL+ L+QLRGRVGR I+ Sbjct: 869 LLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGLSTLYQLRGRVGRSNRIAYAY 928 Query: 594 LLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648 L+Y P L++ S RL +K TE GF IA DL R G ILG QSG + Sbjct: 929 LIYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGSMQSGFIDSV--G 986 Query: 649 PELHDSLLE--IARKDAKH 665 E++ LLE IA+K + Sbjct: 987 FEMYSQLLEEAIAKKQGRE 1005 >gi|260597486|ref|YP_003210057.1| transcription-repair coupling factor [Cronobacter turicensis z3032] gi|260216663|emb|CBA29998.1| Transcription-repair-coupling factor [Cronobacter turicensis z3032] Length = 1167 Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 214/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 610 QLFCEGFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNK 669 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQH++ + N + +E+++ + + LE+ A G+ I+IGT Sbjct: 670 QVAVLVPTTLLAQQHFDNFRDRFANWPVRIELLSRFRSAKEQAQVLEQAADGKVDILIGT 729 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 730 HKLLQSDVKMKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 789 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 790 RDLSIIATPPARRLAVKTF---VREYDNLVVR-EAILREVLRGGQVYYLYNDVE-----N 840 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER +L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 841 IQKAAERLANLVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 898 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL PP ++ ++ RL + + ED Sbjct: 899 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPPPKAMTTDAQKRLEAIASLEDL 958 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 959 GAGFALATHDLEIRGAGELLGEDQSG 984 >gi|218461103|ref|ZP_03501194.1| ATP-dependent DNA helicase RecG [Rhizobium etli Kim 5] Length = 194 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 114/183 (62%), Positives = 148/183 (80%) Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 I +IHGRMS +K++ M +FKNG +LL+AT+V+EVG+DV DA+I++IE+AE FGLAQLH Sbjct: 12 IGLIHGRMSGPEKDAAMMAFKNGESRLLVATSVVEVGVDVPDATIMVIEHAERFGLAQLH 71 Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637 QLRGRVGRG+E S+CILLY PL + + RLS+++ TEDGF IAEEDLK R EGE+LG + Sbjct: 72 QLRGRVGRGDEASTCILLYKGPLGETGHARLSIMRETEDGFRIAEEDLKLRGEGELLGTR 131 Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFI 697 QSG P F IA E H LLEIARKDA +++ +DP+LTS RGQ+IR LLYL++ +EA +F+ Sbjct: 132 QSGTPGFRIASLEAHADLLEIARKDAAYLIERDPELTSDRGQAIRTLLYLFRRDEAIRFL 191 Query: 698 RAG 700 RAG Sbjct: 192 RAG 194 >gi|145298863|ref|YP_001141704.1| transcription-repair coupling factor [Aeromonas salmonicida subsp. salmonicida A449] gi|142851635|gb|ABO89956.1| transcription-repair coupling factor [Aeromonas salmonicida subsp. salmonicida A449] Length = 1154 Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 150/382 (39%), Positives = 210/382 (54%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T+ Q +AI +L DM Q M R++ GDVG GKT VA+ A AV G Q ++ Sbjct: 602 GFPFEETEDQLNAINAVLGDMCQAKSMDRLVCGDVGFGKTEVAMRAAFVAVHGGKQVAVL 661 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY+ + N + VE+++ + ++ +A G+ IIIGTH L Sbjct: 662 VPTTLLAQQHYDNFRDRFANWPVRVEVLSRFRTAREQTSVMKELADGKVDIIIGTHKLLG 721 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + + L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 722 SDLTFKDLGLLIVDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMAMAGMRDLSI 781 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503 I PA R IKT + + D + R V+ L G + Y++ +E EK + + Sbjct: 782 IATPPAKRLAIKTF---VRQQDPAVTREAVLRELKRGGQVYYLHNDVESIEKCAGDLAEL 838 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 V + I I HG+M + D E VM F + LL+ T++IE GIDV A+ I Sbjct: 839 VPE---------ARIGIAHGQMRERDLERVMSDFYHQRFNLLVCTSIIETGIDVPSANTI 889 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPPL-SKNSYTRLSVLKNTED---GF 618 I++ A+H GLAQLHQLRGRVGR + LL HP L SK++ RL + + ED GF Sbjct: 890 IMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKLMSKDALKRLEAIASLEDLGAGF 949 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG QSG Sbjct: 950 ALATHDLEIRGAGELLGDDQSG 971 >gi|139472894|ref|YP_001127609.1| transcription-repair coupling factor [Streptococcus pyogenes str. Manfredo] gi|134271140|emb|CAM29350.1| putative transcription-repair coupling factor [Streptococcus pyogenes str. Manfredo] Length = 1167 Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 157/441 (35%), Positives = 239/441 (54%), Gaps = 25/441 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + + ++ G + + + + + F T+ Q +IK+I DM M R+L Sbjct: 579 LLKLYAERSQQKGFSFSPDDDLQRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLV 638 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQHYE K +N + V++++ Sbjct: 639 GDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYENFKARFENYLVEVDVLSRFR 698 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + + LE + GQ IIIGTH L + + L L+++DE+ RFGV+ + L + T Sbjct: 699 SKKEQAETLEHVQKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKT 758 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N + E I R Sbjct: 759 KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIR--- 815 Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 + G + +++ +++ EKK + + +V +SI +HG+MS+I E+ + Sbjct: 816 EMDRGGQIFYVYNKVDTIEKKVAELQELVPE---------ASIGFVHGQMSEIQLENTLI 866 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F NG +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR I+ L+ Sbjct: 867 DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926 Query: 596 YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 Y P L++ S RL +K TE GF IA DL R G ILG QSG + E Sbjct: 927 YRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 984 Query: 651 LHDSLLE--IARKDAKHILTQ 669 ++ LLE IA K K + Q Sbjct: 985 MYSQLLEQAIASKQGKTTVRQ 1005 >gi|325578622|ref|ZP_08148722.1| transcription-repair coupling factor [Haemophilus parainfluenzae ATCC 33392] gi|325159858|gb|EGC71988.1| transcription-repair coupling factor [Haemophilus parainfluenzae ATCC 33392] Length = 1149 Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 152/415 (36%), Positives = 234/415 (56%), Gaps = 21/415 (5%) Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 +A ++ + +++ KK G + + Q+ PF T Q AI ++ DM Q Sbjct: 569 VAAELLDVYAQREVKK--GFEFKYDREEFQQFAATFPFEETHDQAMAINAVISDMCQPKA 626 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R++ GDVG GKT VA+ A AV Q ++ P +LAQQHYE K N + VE Sbjct: 627 MDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVE 686 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 +++ +++ LE +A G+ I+IGTH L Q +++ L L+I+DE+HRFGV Q+ K Sbjct: 687 VLSRFKTAKEQKQILENLAEGKVDILIGTHKLIQSDVKFSDLGLLIIDEEHRFGVGQKEK 746 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 + Q +L +TATPIPRTL + G D+S I PA R IKT + + D++I Sbjct: 747 IKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIIATPPARRVSIKTF---VRQKDDLII 803 Query: 474 RLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530 R + +L E G + Y++ + ++ + E+ +L + + I HG+M + + Sbjct: 804 R-EAILREILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVVIGHGQMREREL 855 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 E VM F + +L+ +T+IE GIDV A+ IIIE A++FGLAQLHQLRGRVGR + Sbjct: 856 ERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADNFGLAQLHQLRGRVGRSHHQA 915 Query: 591 SCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 LL PP ++K++ RL L++ ++ GF++A DL+ R GE+LG +QSG Sbjct: 916 YAYLLTPPPKLMTKDAKRRLEALESLDNLGAGFILATHDLEIRGAGELLGNEQSG 970 >gi|225869494|ref|YP_002745441.1| transcription-repair coupling factor [Streptococcus equi subsp. equi 4047] gi|225698898|emb|CAW91884.1| putative transcription-repair coupling factor [Streptococcus equi subsp. equi 4047] Length = 1164 Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 147/411 (35%), Positives = 229/411 (55%), Gaps = 21/411 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + + ++ G + + ++ + + F T Q +IK++ +DM M R+L Sbjct: 579 LLKLYAERSQQKGFQFSPDDELQRAFEEDFAFVETDDQVRSIKEVKKDMESVRPMDRLLV 638 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A A+ Q I+ P +LAQQHYE ++ +N + + +++ Sbjct: 639 GDVGFGKTEVAMRAAFKAIGDHKQVAILVPTTVLAQQHYENFRERFENYPVEIAVLSRFR 698 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + ++LER+ GQ IIIGTH L + + L L+++DE+ RFGV+ + L + T Sbjct: 699 SKKEQSESLERLKKGQVDIIIGTHRLLSKDVIFSDLGLIVIDEEQRFGVKHKETLKELKT 758 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N I E I R Sbjct: 759 KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLIREAIIR--- 815 Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 + G + +++ +++ +KK + + +V +SI +HG+MSDI E+ + Sbjct: 816 EMDRGGQVFYVYNKVDTVDKKVAELQELVPE---------ASIGFVHGQMSDIQLENTLM 866 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F NG +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR I+ L+ Sbjct: 867 DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926 Query: 596 YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGM 641 Y P L++ S RL +K TE GF IA DL R G ILG QSG Sbjct: 927 YKPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGF 977 >gi|225867624|ref|YP_002743572.1| transcription-repair coupling factor [Streptococcus equi subsp. zooepidemicus] gi|225700900|emb|CAW97563.1| putative transcription-repair coupling factor [Streptococcus equi subsp. zooepidemicus] Length = 1164 Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 147/411 (35%), Positives = 229/411 (55%), Gaps = 21/411 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + + ++ G + + ++ + + F T Q +IK++ +DM M R+L Sbjct: 579 LLKLYAERSQQKGFQFSPDDELQKAFEEDFAFVETDDQVRSIKEVKKDMESIKPMDRLLV 638 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A A+ Q I+ P +LAQQHYE ++ +N + + +++ Sbjct: 639 GDVGFGKTEVAMRAAFKAIGDHKQVAILVPTTVLAQQHYENFRERFENYPVEIAVLSRFR 698 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + ++LER+ GQ IIIGTH L + + L L+++DE+ RFGV+ + L + T Sbjct: 699 SKKEQSESLERLKKGQVDIIIGTHRLLSKDVIFSDLGLIVIDEEQRFGVKHKETLKELKT 758 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N I E I R Sbjct: 759 KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLIREAIIR--- 815 Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 + G + +++ +++ +KK + + +V +SI +HG+MSDI E+ + Sbjct: 816 EMDRGGQVFYVYNKVDTIDKKVAELQELVPE---------ASIGFVHGQMSDIQLENTLM 866 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F NG +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR I+ L+ Sbjct: 867 DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926 Query: 596 YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGM 641 Y P L++ S RL +K TE GF IA DL R G ILG QSG Sbjct: 927 YKPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGF 977 >gi|332359490|gb|EGJ37309.1| transcription-repair coupling factor [Streptococcus sanguinis SK1056] Length = 1167 Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 155/439 (35%), Positives = 240/439 (54%), Gaps = 28/439 (6%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 I L R Q K G + + ++ + P+ T+ Q +I+++ +DM M R+ Sbjct: 584 IKLYAERSQLK---GFAFSADDSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRPMDRL 640 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 L GDVG GKT VA+ A AV Q ++ P +LAQQHY K+ + + VE+++ Sbjct: 641 LVGDVGFGKTEVAMRAAFKAVNNHKQVAVLVPTTVLAQQHYTNFKERFNDFAVNVEVLSR 700 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 +A +++ L+++ GQ IIIGTH L +++ L L+I+DE+ RFGV+ + L + Sbjct: 701 FRSKAEQKQTLDKLQKGQVDIIIGTHRLLSKDVEFADLGLIIIDEEQRFGVKHKETLKEL 760 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL 475 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N I E + R Sbjct: 761 KKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLR- 819 Query: 476 KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 + G + Y++ +++ E+K S R ++ SI +HG+MS+I E+ Sbjct: 820 --EIDRGGQVYYLYNKVDTIEQKVSELRELIPEV---------SIGYVHGQMSEIRLENT 868 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 + F NG +L+ TT+IE G+D+ +A+ + +ENA+H GL+ L+QLRGRVGR I+ Sbjct: 869 LLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGLSTLYQLRGRVGRSNRIAYAY 928 Query: 594 LLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648 L+Y P L++ S RL +K TE GF IA DL R G ILG QSG + Sbjct: 929 LMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGSMQSGFIDSV--G 986 Query: 649 PELHDSLLE--IARKDAKH 665 E++ LLE IA+K + Sbjct: 987 FEMYSQLLEEAIAKKQGRE 1005 >gi|322515432|ref|ZP_08068423.1| transcription-repair coupling factor [Actinobacillus ureae ATCC 25976] gi|322118555|gb|EFX90788.1| transcription-repair coupling factor [Actinobacillus ureae ATCC 25976] Length = 1162 Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 146/380 (38%), Positives = 219/380 (57%), Gaps = 19/380 (5%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 PF T+ Q++AI ++ DM M R++ GDVG GKT VA+ A AVE Q ++ Sbjct: 616 FPFEETEDQKTAINAVISDMRLPKAMDRLVCGDVGFGKTEVAMRATFLAVENHKQVAVLV 675 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQH+E K N I VE+++ ++ LE++A G+ I++GTH L Q+ Sbjct: 676 PTTLLAQQHFENFKDRFANYPINVEVLSRFKTAKEQKAILEKVAEGKVDILVGTHKLLQE 735 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 +Q+ L L+++DE+HRFGV+Q+ K+ Q +L +TATPIPRTL + G D+S I Sbjct: 736 DVQFRDLGLLVIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLSII 795 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505 PA R IKT + + D+++ R + +L E G + Y++ + + + Sbjct: 796 ASPPARRLTIKTF---VRQHDDLVVR-EAILREILRGGQVYYLHNDV-----ATIENCAT 846 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L + I I HG+M + + E VM F + LL+ +T+IE GIDV A+ III Sbjct: 847 KLAELVPE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIII 904 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLI 620 + A+ FGLAQLHQLRGRVGR + LL PP L+K++ RL L + ++ GF++ Sbjct: 905 DRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKTLTKDAQQRLEALSSIDNLGAGFVL 964 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG +QSG Sbjct: 965 ATHDLEIRGAGELLGSEQSG 984 >gi|329297178|ref|ZP_08254514.1| transcription-repair coupling factor [Plautia stali symbiont] Length = 1147 Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 151/409 (36%), Positives = 220/409 (53%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + + Q PF T Q AI +L DM Q M R++ Sbjct: 568 LLGIYAQRAAKAGFAFKHDREQYQLFCEGFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 627 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ AVE G Q ++ P +LAQQHY+ + N + +E+++ Sbjct: 628 GDVGFGKTEVAMRVAFLAVENGKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFR 687 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + LE+ + G+ I+IGTH L +++ L L+IVDE+HRFGV+ + ++ Sbjct: 688 SAKEQAQVLEQASEGRIDILIGTHKLLMSDLKWRDLGLLIVDEEHRFGVRHKERIKAMRA 747 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I PA R +KT + D ++ R + +L Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDSLVVR-EAIL 803 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ +E N +R L + IAI HG+M + D E +M+ Sbjct: 804 REVLRGGQVYYLYNDVE-----NIEKAAQRLAELVPE--ARIAIGHGQMRERDLERMMND 856 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ TT+IE GIDV A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 857 FHHQRFNVLVCTTIIETGIDVPSANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 916 Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 PP ++ ++ RL + + ED GF +A DL+ R GE+LG QSG Sbjct: 917 PPPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 965 >gi|120554850|ref|YP_959201.1| transcription-repair coupling factor [Marinobacter aquaeolei VT8] gi|120324699|gb|ABM19014.1| transcription-repair coupling factor [Marinobacter aquaeolei VT8] Length = 1173 Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 145/384 (37%), Positives = 219/384 (57%), Gaps = 25/384 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q+ AI+ + +DM+ + M R++ GDVG GKT VA+ A A +G Q ++ Sbjct: 617 GFPFEETPDQQVAIESVFEDMTSERPMDRLVCGDVGFGKTEVAMRAAFLATWSGKQVAVL 676 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHYE + +T + VE+++ + KA+ I G+A I+IGTH L Q Sbjct: 677 VPTTLLAQQHYESFRDRFSDTPVTVELLSRFRSGSQTSKAITAIEEGKADIVIGTHKLLQ 736 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI-DIS 446 I + L LVI+DE+HRFGVQQ+ KL +L +TATPIPRTL + ++G + D+S Sbjct: 737 GDINFKNLGLVIIDEEHRFGVQQKEKLKSLRAEVDMLTLTATPIPRTLNM-AMGHLRDLS 795 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFR 501 I PA R +KT + R D +++ + +L E G + Y++ + EK + R Sbjct: 796 IIATPPARRLSVKTFV--RQRDDAMVK--EAILREILRGGQVYFLHNDVATIEKTAEDLR 851 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ + + + HG+M + E +M F + +L+ TT++E GID+ A+ Sbjct: 852 KLIPE---------ARVGVAHGQMRERQLEQIMSDFYHKRFNVLVCTTIVETGIDIPSAN 902 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED--- 616 IIIE A+ FGLAQLHQLRGRVGR + LL PP +S ++ RL + ++D Sbjct: 903 TIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAISADARKRLDAISESQDLGA 962 Query: 617 GFLIAEEDLKQRKEGEILGIKQSG 640 GF++A DL+ R GE+LG +QSG Sbjct: 963 GFMLATHDLEIRGAGELLGEEQSG 986 >gi|56460626|ref|YP_155907.1| transcription-repair coupling factor [Idiomarina loihiensis L2TR] gi|56179636|gb|AAV82358.1| Transcription-repair coupling factor, superfamily II helicase [Idiomarina loihiensis L2TR] Length = 1160 Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 149/417 (35%), Positives = 232/417 (55%), Gaps = 25/417 (5%) Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 +A ++ + R++ K G N+ + Q+ PF T Q++AI + QDM Q Sbjct: 575 VAAELLDIYARREAKP--GYAFNINEEDYQRFAAGFPFEETIDQQTAIDAVKQDMQQPRA 632 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R++ GDVG GKT VA+ A AV G Q +++ P +LAQQHYE + I VE Sbjct: 633 MDRLVCGDVGFGKTEVAMRAAFIAVNEGKQVMVLVPTTLLAQQHYENFSDRFADQAIRVE 692 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 +++ + LE +++G+ I+IGTH L QD+++ + L L+IVDE+HRFGV+Q+ Sbjct: 693 VLSRFKTAKQSKGILEDLSNGKVDIVIGTHKLLQDNVKCHDLGLLIVDEEHRFGVRQKDT 752 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 + + +L +TATPIPRTL + D+S I PA R +KT + DE Sbjct: 753 IKRLRADVDILTLTATPIPRTLNMAMNNIRDLSIIATPPAKRLAVKTF---VREYDEPTV 809 Query: 474 RLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528 R + +L E G + Y++ ++ EK ++ ++V + + + HG+M + Sbjct: 810 R-EAILREILRGGQVYFLHNNVDTIEKTAADIEALVPE---------ARVVVAHGQMRER 859 Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588 D E +M F + +L+ TT+IE GID+ A+ II++ A+H GLAQ+HQLRGRVGR Sbjct: 860 DLERIMSDFYHQRFNVLVCTTIIETGIDIPSANTIIMDRADHLGLAQMHQLRGRVGRSHH 919 Query: 589 ISSCILLY-HPP-LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 + LL HP ++K+++ RL + ED GF++A DL+ R GE+LG QSG Sbjct: 920 QAYAYLLTPHPKRMTKDAHKRLEAISQLEDLGAGFMLATHDLEIRGAGELLGDDQSG 976 >gi|327463840|gb|EGF10156.1| transcription-repair coupling factor [Streptococcus sanguinis SK1057] Length = 1167 Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 154/439 (35%), Positives = 241/439 (54%), Gaps = 28/439 (6%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 I L R Q K G + + ++ + P+ T+ Q +I+++ +DM M R+ Sbjct: 584 IKLYAERSQLK---GFAFSADDSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRPMDRL 640 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 L GDVG GKT VA+ A AV Q ++ P +LAQQHY K+ + + VE+++ Sbjct: 641 LVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYTNFKERFNDFAVNVEVLSR 700 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 +A +++ L+++ GQ IIIGTH L +++ L L+I+DE+ RFGV+ + L + Sbjct: 701 FRSKAEQKQTLDKLQKGQVDIIIGTHRLLSKDVEFADLGLIIIDEEQRFGVKHKETLKEL 760 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL 475 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N I E + R Sbjct: 761 KKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLR- 819 Query: 476 KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 + G + Y++ +++ E+K S R ++ +SI +HG+MS+I E+ Sbjct: 820 --EIDRGGQVYYLYNKVDTIEQKVSELRELIPE---------ASIGYVHGQMSEIRLENT 868 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 + F NG +L+ TT+IE G+D+ +++ + +ENA+H GL+ L+QLRGRVGR I+ Sbjct: 869 LLDFINGEYDILVTTTIIETGVDIPNSNTLFVENADHMGLSTLYQLRGRVGRSNRIAYAY 928 Query: 594 LLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648 L+Y P L++ S RL +K TE GF IA DL R G ILG QSG + Sbjct: 929 LMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGSMQSGFIDSV--G 986 Query: 649 PELHDSLLE--IARKDAKH 665 E++ LLE IA+K + Sbjct: 987 FEMYSQLLEEAIAKKQGRE 1005 >gi|297832728|ref|XP_002884246.1| hypothetical protein ARALYDRAFT_477305 [Arabidopsis lyrata subsp. lyrata] gi|297330086|gb|EFH60505.1| hypothetical protein ARALYDRAFT_477305 [Arabidopsis lyrata subsp. lyrata] Length = 823 Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 145/381 (38%), Positives = 223/381 (58%), Gaps = 17/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 P++ T Q+ A D+ +D++++ M R++ GDVG GKT VAL A+ V AG QA++ Sbjct: 265 QFPYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 324 Query: 327 MAPIGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +AP +LA+QHY+ I ++++ QI V +++ +A + + LE I G +II+GTH+L Sbjct: 325 LAPTIVLAKQHYDVISERFSLYPQIKVGLLSRFQTKAEKEEYLEMIKDGHLNIIVGTHSL 384 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445 + Y L L++VDE+ RFGV+Q+ K+ T+ VL ++ATPIPRTL L G D Sbjct: 385 LGSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDA 444 Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 S I+ P R PIKT + R ++VIE +K L G + +++ P+I + + E Sbjct: 445 SLISTPPPERIPIKTHLSSF-RKEKVIEAIKNELDRGGQVFYVLPRI--------KGLEE 495 Query: 506 RFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L E F IA+ HG+ E M+ F G K+LI T ++E G+D+ +A+ II Sbjct: 496 VMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTII 555 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFL 619 I++ + FGLAQL+QLRGRVGR ++ + L Y LS + RLS L+ + GF Sbjct: 556 IQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRELGQGFQ 615 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +AE D+ R G I G +Q+G Sbjct: 616 LAERDMGIRGFGTIFGEQQTG 636 >gi|271500156|ref|YP_003333181.1| transcription-repair coupling factor [Dickeya dadantii Ech586] gi|270343711|gb|ACZ76476.1| transcription-repair coupling factor [Dickeya dadantii Ech586] Length = 1150 Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 151/409 (36%), Positives = 222/409 (54%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q G + + Q + PF T Q AI +L DM + M R++ Sbjct: 569 LLDVYAQRAAHTGFAFKHDREQYQLFCQGFPFDTTPDQAQAINAVLSDMCRPLAMDRLVC 628 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AVE Q ++ P +LAQQH++ + N + +E+++ Sbjct: 629 GDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFR 688 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 Q + + LE+ G+ I+IGTH L Q +++ L L+IVDE+HRFGV+ + ++ Sbjct: 689 SQKEQTQVLEQTQEGKVDILIGTHKLLQSDVRWRDLGLLIVDEEHRFGVRHKERIKAMRA 748 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I PA R +KT + D ++ R + +L Sbjct: 749 NVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLAVKTF---VREYDNLVVR-EAML 804 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ +E N +R + L + IAI HG+M + D E VM+ Sbjct: 805 REILRGGQVYYLYNDVE-----NIEKAAQRLSELVPE--ARIAIGHGQMRERDLERVMND 857 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ TT+IE GID+ A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 858 FHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 917 Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 P +S +++ RL + + ED GF +A DL+ R GE+LG QSG Sbjct: 918 PNPKAMSSDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 966 >gi|170717838|ref|YP_001784898.1| transcription-repair coupling factor [Haemophilus somnus 2336] gi|168825967|gb|ACA31338.1| transcription-repair coupling factor [Haemophilus somnus 2336] Length = 1144 Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 151/415 (36%), Positives = 238/415 (57%), Gaps = 21/415 (5%) Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 +A ++ + +++ KK G + + ++ PF T Q+ AI ++ DM QK Sbjct: 565 VAAELLDVYAQREVKK--GFAFQYDKEEFKQFAATFPFEETPDQKMAINAVISDMCQKKA 622 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R++ GDVG GKT VA+ A AV Q ++ P +LAQQHYE K N + VE Sbjct: 623 MDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVE 682 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 +++ +++ L+ + G+ I+IGTH L Q +++ L L+I+DE+HRFGV Q+ K Sbjct: 683 MLSRFRTAKEQKQILQHLNEGKIDILIGTHKLIQSEVKFSDLGLLIIDEEHRFGVSQKEK 742 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 + Q T +L +TATPIPRTL + G D+S I+ PA R IKT + ++D++I Sbjct: 743 IKQLRTNIDILTLTATPIPRTLNMAMSGIRDLSIISTPPARRLSIKTF---VRQVDDLII 799 Query: 474 RLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530 R + VL E G + Y++ + ++ + E+ +L + + + HG+M + + Sbjct: 800 R-EAVLREILRGGQVYYLHNDV-----ASIENCAEKLTALVPE--ARVVVGHGQMREREL 851 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 E VM F + +L+ +T+IE GIDV A+ IIIE A++FGLAQLHQLRGRVGR + Sbjct: 852 ERVMSDFYHQRFNVLVCSTIIETGIDVPTANTIIIERADNFGLAQLHQLRGRVGRSHHQA 911 Query: 591 SCILLY-HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 LL HP ++K++ RL L++ ++ GF++A DL+ R GE+LG +QSG Sbjct: 912 YAYLLTPHPKAMTKDAVKRLEALESLDNLGAGFILATHDLEIRGAGELLGNEQSG 966 >gi|157370240|ref|YP_001478229.1| transcription-repair coupling factor [Serratia proteamaculans 568] gi|157322004|gb|ABV41101.1| transcription-repair coupling factor [Serratia proteamaculans 568] Length = 1176 Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 152/411 (36%), Positives = 223/411 (54%), Gaps = 23/411 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + + Q + PF T QE AI +L DM Q M R++ Sbjct: 595 LLDIYAQRAAKTGFAFKHDREQYQLFCQAFPFETTPDQEQAINAVLSDMCQPLAMDRLVC 654 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AVE G Q ++ P +LAQQH++ + I +E+++ Sbjct: 655 GDVGFGKTEVAMRAAFLAVENGKQVAVLVPTTLLAQQHFDNFRDRFATWPIRIEMMSRFR 714 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +++ ++ G+ IIIGTH L Q +++ L L+IVDE+HRFGV+ + ++ Sbjct: 715 SAKEQQQVMDDAVDGKVDIIIGTHKLLQSDLRWKDLGLLIVDEEHRFGVRHKERIKAMRA 774 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I PA R +KT + D ++ R + +L Sbjct: 775 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDSLVVR-EAIL 830 Query: 480 SE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534 E G + Y++ +E EK + +V + IAI HG+M + D E VM Sbjct: 831 REVLRGGQVYYLYNDVENIEKAAAKLAELVPE---------ARIAIGHGQMRERDLERVM 881 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 + F + +L+ TT+IE GID+ A+ IIIE A+ FGLAQLHQLRGRVGR + L Sbjct: 882 NDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADRFGLAQLHQLRGRVGRSHHQAYAYL 941 Query: 595 LYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 L PP +S +++ RL + + ED GF +A DL+ R GE+LG QSG Sbjct: 942 LTPPPKAMSTDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 992 >gi|238920223|ref|YP_002933738.1| transcription-repair coupling factor [Edwardsiella ictaluri 93-146] gi|238869792|gb|ACR69503.1| transcription-repair coupling factor, putative [Edwardsiella ictaluri 93-146] Length = 1153 Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 147/386 (38%), Positives = 214/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV +G Sbjct: 597 QLFCQGFPFETTADQAMAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVHSGK 656 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L G+ I+IGT Sbjct: 657 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQVLADTVDGKVDILIGT 716 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +Q+ L L+IVDE+HRFGV+Q+ ++ +L +TATPIPRTL + G Sbjct: 717 HKLLQGDVQWRDLGLLIVDEEHRFGVRQKERIKAMRADVDILTLTATPIPRTLNMAMSGM 776 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ ++ Sbjct: 777 RDLSIIATPPARRMAVKTF---VREYDSLVVR-EAILRETLRGGQVYYLYNDVD-----T 827 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + +R +L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 828 IQKAADRLATLVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPS 885 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL PP ++ ++ RL + + ED Sbjct: 886 ANTIIIERADHFGLAQLHQLRGRVGRSYHQAYAYLLTPPPKAMTVDAQKRLEAIASLEDL 945 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 946 GAGFALATHDLEIRGAGELLGDDQSG 971 >gi|306834606|ref|ZP_07467718.1| transcription-repair coupling factor [Streptococcus bovis ATCC 700338] gi|304423242|gb|EFM26396.1| transcription-repair coupling factor [Streptococcus bovis ATCC 700338] Length = 1169 Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 166/469 (35%), Positives = 255/469 (54%), Gaps = 33/469 (7%) Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266 N +++ R K + S E +A D+LL L R Q K G + + + ++ Sbjct: 558 NKLNDGRFQKTKQKVSKQVEDIA-DDLLK----LYAERSQLK---GFAFSPDDDLQREFD 609 Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 + F T+ Q +IK+I DM + M R+L GDVG GKT VA+ A AV+ Q + Sbjct: 610 EDFAFVETEDQLRSIKEIKNDMEEDKPMDRLLVGDVGFGKTEVAMRAAFKAVKDHKQVAV 669 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 + P +LAQQHY + +N + V++++ + + L+++ GQ IIIGTH L Sbjct: 670 LVPTTVLAQQHYTNFSERFENYPVTVDVLSRFRSKKEQNDTLDKLKKGQVDIIIGTHRLL 729 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 + + L L+I+DE+ RFGV+ + KL + T VL +TATPIPRTL ++ LG D+S Sbjct: 730 SKDVDFADLGLIIIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHISMLGIRDLS 789 Query: 447 KITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRS 502 I P R P++T ++ N I E I R + G + +++ +++ ++K S + Sbjct: 790 VIETPPTNRYPVQTYVLETNPGLIREAIIR---EIDRGGQVFYVYNRVDTIDQKVSELQE 846 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 +V +SI +HG+MS+I E+ + F +G +L+ATT+IE G+D+ + + Sbjct: 847 LVPE---------ASIGFVHGQMSEIQLENTLMDFIDGVYDVLVATTIIETGVDISNVNT 897 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DG 617 + IENA+H GL+ L+QLRGRVGR I+ L+YHP L++ S RL +K TE G Sbjct: 898 LFIENADHMGLSTLYQLRGRVGRSNRIAYAYLMYHPDKILTEVSEKRLDAIKGFTELGSG 957 Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAK 664 F IA DL R G ILG QSG + E++ LLE IA+K K Sbjct: 958 FKIAMRDLSIRGAGNILGASQSGFIDSV--GFEMYSQLLEEAIAKKQGK 1004 >gi|168484302|ref|ZP_02709254.1| transcription-repair coupling factor [Streptococcus pneumoniae CDC1873-00] gi|172042444|gb|EDT50490.1| transcription-repair coupling factor [Streptococcus pneumoniae CDC1873-00] gi|332198870|gb|EGJ12952.1| transcription-repair coupling factor [Streptococcus pneumoniae GA47368] Length = 1169 Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 152/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +I++I +DM M R+L GDVG GKT VA+ A AV Q VI+ P Sbjct: 610 PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY K+ QN + V++++ + + LE++ +GQ I+IGTH + Sbjct: 670 TTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 730 VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLYMSMLGIRDLSVIE 789 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R P++T ++ N D VI VL E G + Y++ +++ ++V++ Sbjct: 790 TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837 Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E +SI +HGRMS++ E+ + F G +L+ TT+IE G+D+ +A+ + I Sbjct: 838 VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620 ENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF I Sbjct: 898 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 A DL R G +LG QSG + EL+ LLE IA+++ Sbjct: 958 AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000 >gi|301156034|emb|CBW15505.1| transcription-repair coupling factor [Haemophilus parainfluenzae T3T1] Length = 1149 Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 152/415 (36%), Positives = 234/415 (56%), Gaps = 21/415 (5%) Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 +A ++ + +++ KK G + + Q+ PF T Q AI ++ DM Q Sbjct: 569 VAAELLDVYAQREVKK--GFEFKYDREEFQQFAATFPFEETHDQAMAINAVISDMCQPKA 626 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R++ GDVG GKT VA+ A AV Q ++ P +LAQQHYE K N + VE Sbjct: 627 MDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVE 686 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 +++ +++ LE +A G+ I+IGTH L Q +++ L L+I+DE+HRFGV Q+ K Sbjct: 687 VLSRFKTTKEQKQILENLAEGKVDILIGTHKLIQSDVKFSDLGLLIIDEEHRFGVGQKEK 746 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 + Q +L +TATPIPRTL + G D+S I PA R IKT + + D++I Sbjct: 747 IKQLRENIDILTLTATPIPRTLNMAMNGIRDLSIIATPPARRVSIKTF---VRQKDDLII 803 Query: 474 RLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530 R + +L E G + Y++ + ++ + E+ +L + + I HG+M + + Sbjct: 804 R-EAILREILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVVIGHGQMREREL 855 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 E VM F + +L+ +T+IE GIDV A+ IIIE A++FGLAQLHQLRGRVGR + Sbjct: 856 ERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADNFGLAQLHQLRGRVGRSHHQA 915 Query: 591 SCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 LL PP ++K++ RL L++ ++ GF++A DL+ R GE+LG +QSG Sbjct: 916 YAYLLTPPPKLMTKDAKRRLEALESLDNLGAGFILATHDLEIRGAGELLGNEQSG 970 >gi|168491776|ref|ZP_02715919.1| transcription-repair coupling factor [Streptococcus pneumoniae CDC0288-04] gi|183573939|gb|EDT94467.1| transcription-repair coupling factor [Streptococcus pneumoniae CDC0288-04] Length = 1169 Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 153/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +I++I +DM M R+L GDVG GKT VA+ A AV Q VI+ P Sbjct: 610 PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY K+ QN + V++++ + + LE++ +GQ I+IGTH + Sbjct: 670 TTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 730 IVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R P++T ++ N D VI VL E G + Y++ +++ ++V++ Sbjct: 790 TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQGYYLYNKVD--------TIVQK 837 Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E +SI +HGRMS++ E+ + F G +L+ TT+IE G+D+ +A+ + I Sbjct: 838 VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620 ENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF I Sbjct: 898 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 A DL R G +LG QSG + EL+ LLE IA+++ Sbjct: 958 AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000 >gi|297579403|ref|ZP_06941331.1| transcription-repair coupling factor [Vibrio cholerae RC385] gi|297536997|gb|EFH75830.1| transcription-repair coupling factor [Vibrio cholerae RC385] Length = 1155 Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 145/382 (37%), Positives = 216/382 (56%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI +L DM Q M R++ GDVG GKT VA+ A A + G Q ++ Sbjct: 601 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 660 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ +++ L+ +A G+ I++GTH L Sbjct: 661 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKIDILVGTHKLLS 720 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 721 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 780 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503 I PA R IKT + + D+ + R V+ + G + Y++ Q+E +K ++ ++ Sbjct: 781 IATPPARRLAIKTF---VRQSDDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLENL 837 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 V + I + HG+M + + E VM+ F + LL+ TT+IE GIDV A+ I Sbjct: 838 VPE---------ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTI 888 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GF 618 I++ A+ GLAQLHQLRGRVGR + LL PP ++K++ RL + + ED GF Sbjct: 889 IMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGF 948 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG +QSG Sbjct: 949 TLATHDLEIRGAGELLGEEQSG 970 >gi|327471614|gb|EGF17057.1| transcription-repair coupling factor [Streptococcus sanguinis SK408] Length = 1167 Score = 239 bits (611), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 150/409 (36%), Positives = 230/409 (56%), Gaps = 25/409 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T+ Q +I+++ +DM M R+L GDVG GKT VA+ A AV Q ++ Sbjct: 611 DFPYVETEDQLRSIQEVKKDMESSRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVL 670 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY K+ + + VE+++ +A +++ LE++ GQ IIIGTH L Sbjct: 671 VPTTVLAQQHYTNFKERFNDFAVNVEVLSRFRSKAEQKQTLEKLQKGQVDIIIGTHRLLS 730 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++ L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S Sbjct: 731 KDVEFADLGLIIIDEEQRFGVKHKETLKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSV 790 Query: 448 ITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSV 503 I P R P++T ++ N I E + R + G + Y++ +++ E+K S R + Sbjct: 791 IETPPTNRYPVQTYVLESNPTVIREAVLR---EIDRGGQVYYLYNKVDTIEQKVSELREL 847 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + SI +HG+MS+I E+ + F NG +L+ TT+IE G+D+ +A+ + Sbjct: 848 IPEV---------SIGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTL 898 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGF 618 +ENA+H GL+ L+QLRGRVGR I+ L+Y P L++ S RL +K TE GF Sbjct: 899 FVENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLEAIKGFTELGSGF 958 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKH 665 IA DL R G ILG QSG + E++ LLE IA+K + Sbjct: 959 KIAMRDLSIRGAGNILGSMQSGFIDSV--GFEMYSQLLEEAIAKKQGRE 1005 >gi|261867464|ref|YP_003255386.1| transcription-repair coupling factor [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412796|gb|ACX82167.1| transcription-repair coupling factor [Aggregatibacter actinomycetemcomitans D11S-1] Length = 1173 Score = 239 bits (611), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 146/409 (35%), Positives = 234/409 (57%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + + G + + Q+ PF T Q AI ++ DM+Q M R++ Sbjct: 595 LLDVYAQREAQKGFSFQYDREEFQQFTATFPFEETHDQLMAINAVISDMTQPKAMDRLVC 654 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQH++ K N + VE+++ Sbjct: 655 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHFDNFKDRFANLPVNVEMLSRFK 714 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +++ ++ +A G+ I+IGTH + Q +Q++ L L+I+DE+HRFGV+Q+ K+ Q Sbjct: 715 TAKEQKRVIQDLADGKVDILIGTHKIIQGDVQFHDLGLLIIDEEHRFGVRQKEKMKQLRA 774 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I+ PA R IKT + + D+++ R + +L Sbjct: 775 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLTIKTF---VRQTDDLVIR-EAIL 830 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ + ++ + E+ +L + + + HG+M + + E VM Sbjct: 831 REILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVTVGHGQMRERELERVMSD 883 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ +T+IE GIDV A+ IIIE A++FGLAQLHQLRGRVGR + LL Sbjct: 884 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADNFGLAQLHQLRGRVGRSHHQAYAYLLT 943 Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 PP ++K++ RL L++ ++ GF++A DL+ R GE+LG +QSG Sbjct: 944 PPPKLMTKDAQKRLEALESLDNLGAGFILATHDLEIRGAGELLGNEQSG 992 >gi|15602906|ref|NP_245978.1| hypothetical protein PM1041 [Pasteurella multocida subsp. multocida str. Pm70] gi|12721375|gb|AAK03125.1| Mfd [Pasteurella multocida subsp. multocida str. Pm70] Length = 1145 Score = 239 bits (611), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 150/409 (36%), Positives = 231/409 (56%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + + G + + + Q+ PF T QE AI ++ DM Q M R++ Sbjct: 569 LLDVYAQREAQKGFAFHYDREAFQQFAATFPFEETVDQEMAINAVIADMCQAKAMDRLVC 628 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQH+E K N I VE+++ Sbjct: 629 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHFENFKDRFANLPINVEVLSRFK 688 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 ++ L+ +A G+ I+IGTH L Q +Q+ L L+++DE+HRFGV+Q+ ++ Q Sbjct: 689 TAKEQKVVLQNLAEGKVDILIGTHKLIQSDVQFKDLGLLVIDEEHRFGVRQKERIKQLRA 748 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I+ PA R IKT + + DE + R + +L Sbjct: 749 NIDILTLTATPIPRTLNMAMHGIRDLSIISTPPARRLTIKTF---VKQSDESVIR-EAIL 804 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ + ++ + E+ +L + + I HG+M + + E VM Sbjct: 805 REILRGGQVYYLHNDV-----ASIENCAEKLRTLVPE--ARVTIGHGQMRERELERVMSD 857 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ +T+IE GIDV A+ IIIE A++FGLAQLHQLRGRVGR + LL Sbjct: 858 FYHQRFNVLVCSTIIETGIDVPTANTIIIERADNFGLAQLHQLRGRVGRSHHQAYAYLLT 917 Query: 597 HP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 P ++K++ RL L++ ++ GF++A DL+ R GE+LG +QSG Sbjct: 918 PPIKAMTKDAQKRLEALESLDNLGAGFILATHDLEIRGAGELLGSEQSG 966 >gi|15902050|ref|NP_357600.1| transcription-repair coupling factor [Streptococcus pneumoniae R6] gi|116516151|ref|YP_815427.1| transcription-repair coupling factor [Streptococcus pneumoniae D39] gi|15457534|gb|AAK98810.1| Transcription-repair coupling factor [Streptococcus pneumoniae R6] gi|116076727|gb|ABJ54447.1| transcription-repair coupling factor [Streptococcus pneumoniae D39] Length = 1169 Score = 239 bits (611), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 152/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +I++I +DM M R+L GDVG GKT VA+ A AV Q VI+ P Sbjct: 610 PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY K+ QN + V++++ + + LE++ +GQ I+IGTH + Sbjct: 670 TTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 730 VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R P++T ++ N D VI VL E G + Y++ +++ ++V++ Sbjct: 790 TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQGYYLYNKVD--------TIVQK 837 Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E +SI +HGRMS++ E+ + F G +L+ TT+IE G+D+ +A+ + I Sbjct: 838 VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620 ENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF I Sbjct: 898 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 A DL R G +LG QSG + EL+ LLE IA+++ Sbjct: 958 AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000 >gi|148984550|ref|ZP_01817838.1| transcription-repair coupling factor [Streptococcus pneumoniae SP3-BS71] gi|147923327|gb|EDK74441.1| transcription-repair coupling factor [Streptococcus pneumoniae SP3-BS71] gi|301799155|emb|CBW31667.1| putative putative transcription-repair coupling factor [Streptococcus pneumoniae OXC141] Length = 1169 Score = 239 bits (611), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 152/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +I++I +DM M R+L GDVG GKT VA+ A AV Q VI+ P Sbjct: 610 PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY K+ QN + V++++ + + LE++ +GQ I+IGTH + Sbjct: 670 TTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 730 VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R P++T ++ N D VI VL E G + Y++ +++ ++V++ Sbjct: 790 TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837 Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E +SI +HGRMS++ E+ + F G +L+ TT+IE G+D+ +A+ + I Sbjct: 838 VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620 ENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF I Sbjct: 898 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 A DL R G +LG QSG + EL+ LLE IA+++ Sbjct: 958 AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000 >gi|169833013|ref|YP_001693440.1| transcription-repair coupling factor [Streptococcus pneumoniae Hungary19A-6] gi|168995515|gb|ACA36127.1| transcription-repair coupling factor [Streptococcus pneumoniae Hungary19A-6] Length = 1169 Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 152/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +I++I +DM M R+L GDVG GKT VA+ A AV Q VI+ P Sbjct: 610 PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY K+ QN + V++++ + + LE++ +GQ I+IGTH + Sbjct: 670 TTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 730 VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R P++T ++ N D VI VL E G + Y++ +++ ++V++ Sbjct: 790 TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQGYYLYNKVD--------TIVQK 837 Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E +SI +HGRMS++ E+ + F G +L+ TT+IE G+D+ +A+ + I Sbjct: 838 VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620 ENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF I Sbjct: 898 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 A DL R G +LG QSG + EL+ LLE IA+++ Sbjct: 958 AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000 >gi|332198663|gb|EGJ12746.1| transcription-repair coupling factor [Streptococcus pneumoniae GA41317] Length = 1169 Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 152/405 (37%), Positives = 230/405 (56%), Gaps = 25/405 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +I++I +DM + M R+L GDVG GKT VA+ A AV Q VI+ P Sbjct: 610 PYVETDDQLRSIEEIKRDMQASHPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY K+ QN + V++++ + + LE++ +GQ I+IGTH + Sbjct: 670 TTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 730 VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R P++T ++ N D VI VL E G + Y++ +++ ++V++ Sbjct: 790 TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837 Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E +SI +HGRMS++ E+ + F G +L+ TT+IE G+D+ +A+ + I Sbjct: 838 VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620 ENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF I Sbjct: 898 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 A DL R G +LG QSG + EL+ LLE IA+++ Sbjct: 958 AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000 >gi|304397240|ref|ZP_07379119.1| transcription-repair coupling factor [Pantoea sp. aB] gi|304355389|gb|EFM19757.1| transcription-repair coupling factor [Pantoea sp. aB] Length = 1147 Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 145/386 (37%), Positives = 218/386 (56%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A A+E Sbjct: 591 QLFCESFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAIENHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+++ + + LE+ + G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRTAKEQAQVLEQASDGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L ++++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLMSDLKWHDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D+++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREFDDLVIR-EAILREVLRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 +R + L + +AI HG+M + D E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IEKAAQRLSELVPE--ARVAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ +++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKSMTADAHKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGDEQSG 965 >gi|168576116|ref|ZP_02722021.1| transcription-repair coupling factor [Streptococcus pneumoniae MLV-016] gi|307066642|ref|YP_003875608.1| transcription-repair coupling factor [Streptococcus pneumoniae AP200] gi|183578032|gb|EDT98560.1| transcription-repair coupling factor [Streptococcus pneumoniae MLV-016] gi|306408179|gb|ADM83606.1| Transcription-repair coupling factor (superfamily II helicase) [Streptococcus pneumoniae AP200] Length = 1169 Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 152/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +I++I +DM M R+L GDVG GKT VA+ A AV Q VI+ P Sbjct: 610 PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY K+ QN + V++++ + + LE++ +GQ I+IGTH + Sbjct: 670 TTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 730 VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R P++T ++ N D VI VL E G + Y++ +++ ++V++ Sbjct: 790 TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837 Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E +SI +HGRMS++ E+ + F G +L+ TT+IE G+D+ +A+ + I Sbjct: 838 VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620 ENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF I Sbjct: 898 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 A DL R G +LG QSG + EL+ LLE IA+++ Sbjct: 958 AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000 >gi|121727094|ref|ZP_01680268.1| transcription-repair coupling factor [Vibrio cholerae V52] gi|121630472|gb|EAX62864.1| transcription-repair coupling factor [Vibrio cholerae V52] Length = 1155 Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 148/383 (38%), Positives = 214/383 (55%), Gaps = 23/383 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI +L DM Q M R++ GDVG GKT VA+ A A + G Q ++ Sbjct: 601 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 660 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ +++ L+ +A G+ I++GTH L Sbjct: 661 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLS 720 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 721 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 780 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502 I PA R IKT + D VI + VL E G + Y++ Q+E +K ++ Sbjct: 781 IATPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEK 836 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 +V + I + HG+M + + E VM+ F + LL+ TT+IE GIDV A+ Sbjct: 837 LVPE---------ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 887 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617 II++ A+ GLAQLHQLRGRVGR + LL PP ++K++ RL + + ED G Sbjct: 888 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAG 947 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F +A DL+ R GE+LG +QSG Sbjct: 948 FTLATHDLEIRGAGELLGEEQSG 970 >gi|148997952|ref|ZP_01825465.1| transcription-repair coupling factor [Streptococcus pneumoniae SP11-BS70] gi|147755962|gb|EDK63005.1| transcription-repair coupling factor [Streptococcus pneumoniae SP11-BS70] Length = 1118 Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 152/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +I++I +DM M R+L GDVG GKT VA+ A AV Q VI+ P Sbjct: 559 PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 618 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY K+ QN + V++++ + + LE++ +GQ I+IGTH + Sbjct: 619 TTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 678 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 679 VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 738 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R P++T ++ N D VI VL E G + Y++ +++ ++V++ Sbjct: 739 TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 786 Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E +SI +HGRMS++ E+ + F G +L+ TT+IE G+D+ +A+ + I Sbjct: 787 VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 846 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620 ENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF I Sbjct: 847 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 906 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 A DL R G +LG QSG + EL+ LLE IA+++ Sbjct: 907 AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 949 >gi|148988910|ref|ZP_01820325.1| transcription-repair coupling factor [Streptococcus pneumoniae SP6-BS73] gi|147925721|gb|EDK76797.1| transcription-repair coupling factor [Streptococcus pneumoniae SP6-BS73] Length = 1169 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 152/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +I++I +DM M R+L GDVG GKT VA+ A AV Q VI+ P Sbjct: 610 PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY K+ QN + V++++ + + LE++ +GQ I+IGTH + Sbjct: 670 TTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 730 VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R P++T ++ N D VI VL E G + Y++ +++ ++V++ Sbjct: 790 TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837 Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E +SI +HGRMS++ E+ + F G +L+ TT+IE G+D+ +A+ + I Sbjct: 838 VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620 ENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF I Sbjct: 898 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 A DL R G +LG QSG + EL+ LLE IA+++ Sbjct: 958 AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000 >gi|15641888|ref|NP_231520.1| transcription-repair coupling factor [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587314|ref|ZP_01677086.1| transcription-repair coupling factor [Vibrio cholerae 2740-80] gi|147674778|ref|YP_001217419.1| transcription-repair coupling factor [Vibrio cholerae O395] gi|153823448|ref|ZP_01976115.1| transcription-repair coupling factor [Vibrio cholerae B33] gi|227082016|ref|YP_002810567.1| transcription-repair coupling factor [Vibrio cholerae M66-2] gi|254848973|ref|ZP_05238323.1| transcription-repair coupling factor [Vibrio cholerae MO10] gi|255745354|ref|ZP_05419303.1| transcription-repair coupling factor [Vibrio cholera CIRS 101] gi|262153542|ref|ZP_06028671.1| transcription-repair coupling factor [Vibrio cholerae INDRE 91/1] gi|262167442|ref|ZP_06035149.1| transcription-repair coupling factor [Vibrio cholerae RC27] gi|298498075|ref|ZP_07007882.1| transcription-repair coupling factor [Vibrio cholerae MAK 757] gi|9656418|gb|AAF95034.1| transcription-repair coupling factor [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548474|gb|EAX58532.1| transcription-repair coupling factor [Vibrio cholerae 2740-80] gi|126519037|gb|EAZ76260.1| transcription-repair coupling factor [Vibrio cholerae B33] gi|146316661|gb|ABQ21200.1| transcription-repair coupling factor [Vibrio cholerae O395] gi|227009904|gb|ACP06116.1| transcription-repair coupling factor [Vibrio cholerae M66-2] gi|227013784|gb|ACP09994.1| transcription-repair coupling factor [Vibrio cholerae O395] gi|254844678|gb|EET23092.1| transcription-repair coupling factor [Vibrio cholerae MO10] gi|255737184|gb|EET92580.1| transcription-repair coupling factor [Vibrio cholera CIRS 101] gi|262024139|gb|EEY42833.1| transcription-repair coupling factor [Vibrio cholerae RC27] gi|262030669|gb|EEY49304.1| transcription-repair coupling factor [Vibrio cholerae INDRE 91/1] gi|297542408|gb|EFH78458.1| transcription-repair coupling factor [Vibrio cholerae MAK 757] Length = 1155 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 148/383 (38%), Positives = 214/383 (55%), Gaps = 23/383 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI +L DM Q M R++ GDVG GKT VA+ A A + G Q ++ Sbjct: 601 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 660 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ +++ L+ +A G+ I++GTH L Sbjct: 661 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLS 720 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 721 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 780 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502 I PA R IKT + D VI + VL E G + Y++ Q+E +K ++ Sbjct: 781 IATPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEK 836 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 +V + I + HG+M + + E VM+ F + LL+ TT+IE GIDV A+ Sbjct: 837 LVPE---------ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 887 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617 II++ A+ GLAQLHQLRGRVGR + LL PP ++K++ RL + + ED G Sbjct: 888 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAG 947 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F +A DL+ R GE+LG +QSG Sbjct: 948 FTLATHDLEIRGAGELLGEEQSG 970 >gi|225855741|ref|YP_002737252.1| transcription-repair coupling factor [Streptococcus pneumoniae P1031] gi|225724744|gb|ACO20596.1| transcription-repair coupling factor [Streptococcus pneumoniae P1031] Length = 1169 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 152/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +I++I +DM M R+L GDVG GKT VA+ A AV Q VI+ P Sbjct: 610 PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY K+ QN + V++++ + + LE++ +GQ I+IGTH + Sbjct: 670 TTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 730 VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R P++T ++ N D VI VL E G + Y++ +++ ++V++ Sbjct: 790 TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837 Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E +SI +HGRMS++ E+ + F G +L+ TT+IE G+D+ +A+ + I Sbjct: 838 VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620 ENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF I Sbjct: 898 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 A DL R G +LG QSG + EL+ LLE IA+++ Sbjct: 958 AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000 >gi|168493994|ref|ZP_02718137.1| transcription-repair coupling factor [Streptococcus pneumoniae CDC3059-06] gi|183575852|gb|EDT96380.1| transcription-repair coupling factor [Streptococcus pneumoniae CDC3059-06] Length = 1169 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 152/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +I++I +DM M R+L GDVG GKT VA+ A AV Q VI+ P Sbjct: 610 PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY K+ QN + V++++ + + LE++ +GQ I+IGTH + Sbjct: 670 TTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 730 VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R P++T ++ N D VI VL E G + Y++ +++ ++V++ Sbjct: 790 TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837 Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E +SI +HGRMS++ E+ + F G +L+ TT+IE G+D+ +A+ + I Sbjct: 838 VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620 ENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF I Sbjct: 898 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 A DL R G +LG QSG + EL+ LLE IA+++ Sbjct: 958 AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000 >gi|149013378|ref|ZP_01834087.1| transcription-repair coupling factor [Streptococcus pneumoniae SP19-BS75] gi|182682976|ref|YP_001834723.1| transcription-repair coupling factor [Streptococcus pneumoniae CGSP14] gi|303254907|ref|ZP_07340992.1| transcription-repair coupling factor [Streptococcus pneumoniae BS455] gi|303259732|ref|ZP_07345708.1| transcription-repair coupling factor [Streptococcus pneumoniae SP-BS293] gi|303262199|ref|ZP_07348144.1| transcription-repair coupling factor [Streptococcus pneumoniae SP14-BS292] gi|303265395|ref|ZP_07351302.1| transcription-repair coupling factor [Streptococcus pneumoniae BS397] gi|303266057|ref|ZP_07351951.1| transcription-repair coupling factor [Streptococcus pneumoniae BS457] gi|303268465|ref|ZP_07354259.1| transcription-repair coupling factor [Streptococcus pneumoniae BS458] gi|147762901|gb|EDK69849.1| transcription-repair coupling factor [Streptococcus pneumoniae SP19-BS75] gi|182628310|gb|ACB89258.1| transcription-repair coupling factor [Streptococcus pneumoniae CGSP14] gi|301800979|emb|CBW33640.1| putative putative transcription-repair coupling factor [Streptococcus pneumoniae INV200] gi|302598178|gb|EFL65239.1| transcription-repair coupling factor [Streptococcus pneumoniae BS455] gi|302636839|gb|EFL67329.1| transcription-repair coupling factor [Streptococcus pneumoniae SP14-BS292] gi|302639284|gb|EFL69743.1| transcription-repair coupling factor [Streptococcus pneumoniae SP-BS293] gi|302641966|gb|EFL72319.1| transcription-repair coupling factor [Streptococcus pneumoniae BS458] gi|302644361|gb|EFL74614.1| transcription-repair coupling factor [Streptococcus pneumoniae BS457] gi|302645072|gb|EFL75312.1| transcription-repair coupling factor [Streptococcus pneumoniae BS397] Length = 1169 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 152/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +I++I +DM M R+L GDVG GKT VA+ A AV Q VI+ P Sbjct: 610 PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY K+ QN + V++++ + + LE++ +GQ I+IGTH + Sbjct: 670 TTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 730 VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R P++T ++ N D VI VL E G + Y++ +++ ++V++ Sbjct: 790 TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837 Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E +SI +HGRMS++ E+ + F G +L+ TT+IE G+D+ +A+ + I Sbjct: 838 VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620 ENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF I Sbjct: 898 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 A DL R G +LG QSG + EL+ LLE IA+++ Sbjct: 958 AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000 >gi|293396556|ref|ZP_06640832.1| transcription-repair coupling factor [Serratia odorifera DSM 4582] gi|291420820|gb|EFE94073.1| transcription-repair coupling factor [Serratia odorifera DSM 4582] Length = 1159 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 159/424 (37%), Positives = 229/424 (54%), Gaps = 26/424 (6%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T QE AI +L DM Q M R++ GDVG GKT VA+ A AVE G Sbjct: 601 QLFCQTFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENGK 660 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQH++ + + +E+++ +++ L+ A G+ I+IGT Sbjct: 661 QVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMMSRFRSAKEQQQVLDDAADGKVDIVIGT 720 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 721 HKLLQSDLRWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 780 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 781 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREVLRGGQVYYLYNDVE-----N 831 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 +R L + IAI HG+M + D E VM+ F + +L+ TT+IE GID+ Sbjct: 832 IDKAAQRLAELVPE--ARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPS 889 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616 A+ IIIE A+ FGLAQLHQLRGRVGR + LL P +S +++ RL + ED Sbjct: 890 ANTIIIERADRFGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSADAHKRLEAIATLEDL 949 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP--- 671 GF +A DL+ R GE+LG QSG + L+ LLE A KH ++P Sbjct: 950 GAGFALATHDLEIRGAGELLGEDQSG--QMTTIGFSLYMELLESAVDALKH--GREPSLE 1005 Query: 672 DLTS 675 DLTS Sbjct: 1006 DLTS 1009 >gi|76788164|ref|YP_328735.1| transcription-repair coupling factor [Streptococcus agalactiae A909] gi|77405617|ref|ZP_00782706.1| reticulocyte binding protein [Streptococcus agalactiae H36B] gi|76563221|gb|ABA45805.1| transcription-repair coupling factor [Streptococcus agalactiae A909] gi|77175761|gb|EAO78541.1| reticulocyte binding protein [Streptococcus agalactiae H36B] Length = 1165 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 160/459 (34%), Positives = 250/459 (54%), Gaps = 30/459 (6%) Query: 224 ARERLA--YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281 A++R+A +++ + L R Q + G + + + + + T+ Q +I Sbjct: 564 AKQRVAKQVEDIADDLLKLYAERSQLQ---GFAFSPDDNMQNDFDNDFAYVETEDQLRSI 620 Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341 K+I QDM M R+L GDVG GKT VA+ A AV Q ++ P +LAQQH+E Sbjct: 621 KEIKQDMEGNRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHFENF 680 Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401 K+ N + V++++ + + L+R++ GQ IIIGTH L + + L L+++D Sbjct: 681 KERFSNYPVTVDVLSRFRSKKEQTDTLKRLSKGQVDIIIGTHRLLSQDVVFSDLGLIVID 740 Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461 E+ RFGV+ + KL + T VL +TATPIPRTL ++ LG D+S I P R P++T Sbjct: 741 EEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTY 800 Query: 462 IIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSS 517 ++ N + E I R + G + +++ +++ E+K S + +V +S Sbjct: 801 VLETNPGLVREAIIR---EIDRGGQVFYVYNKVDTIEQKVSELQELVPE---------AS 848 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 I +HG+MS+I E+ + F NG +L+ATT+IE G+D+ + + + +ENA+H GL+ L+ Sbjct: 849 IGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFVENADHMGLSTLY 908 Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGE 632 QLRGRVGR I+ L+Y P L++ S RL +K TE GF IA DL R G Sbjct: 909 QLRGRVGRSNRIAYAYLMYRPDKVLTEISEKRLDAIKGFTELGSGFKIAMRDLSIRGAGN 968 Query: 633 ILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669 ILG QSG + E++ LLE IA K K ++ Q Sbjct: 969 ILGASQSGFIDSV--GFEMYSQLLEQAIATKQGKSLIRQ 1005 >gi|254226050|ref|ZP_04919649.1| transcription-repair coupling factor [Vibrio cholerae V51] gi|125621433|gb|EAZ49768.1| transcription-repair coupling factor [Vibrio cholerae V51] Length = 1155 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 148/383 (38%), Positives = 214/383 (55%), Gaps = 23/383 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI +L DM Q M R++ GDVG GKT VA+ A A + G Q ++ Sbjct: 601 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 660 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ +++ L+ +A G+ I++GTH L Sbjct: 661 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLS 720 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 721 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 780 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502 I PA R IKT + D VI + VL E G + Y++ Q+E +K ++ Sbjct: 781 IATPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEK 836 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 +V + I + HG+M + + E VM+ F + LL+ TT+IE GIDV A+ Sbjct: 837 LVPE---------ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 887 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617 II++ A+ GLAQLHQLRGRVGR + LL PP ++K++ RL + + ED G Sbjct: 888 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAG 947 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F +A DL+ R GE+LG +QSG Sbjct: 948 FTLATHDLEIRGAGELLGEEQSG 970 >gi|119774467|ref|YP_927207.1| transcription-repair coupling factor [Shewanella amazonensis SB2B] gi|119766967|gb|ABL99537.1| transcription-repair coupling factor [Shewanella amazonensis SB2B] Length = 1155 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 149/430 (34%), Positives = 237/430 (55%), Gaps = 23/430 (5%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W+ R+ + +A ++ + R++ + G P ++ + + PF T QE+ Sbjct: 554 WSKAKRKAIEKIRDVAAELLDVYARREARP--GDPCTLDEAEYAQFAQGFPFEETVDQET 611 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AIK ++ DM Q M R++ GDVG GKT VA+ A AV +G Q V++ P +LAQQH+E Sbjct: 612 AIKAVIDDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVSSGKQVVVLVPTTLLAQQHFE 671 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 K + + +E+++ ++ L + G+ I+IGTH L + + L L+I Sbjct: 672 NFKDRFADWPVRIEVMSRFRTAKEQQAVLSAMGEGKVDIVIGTHKLLNTELNFESLGLLI 731 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 +DE+HRFGV+Q+ ++ +L +TATPIPRTL + G D+S I PA R +K Sbjct: 732 IDEEHRFGVRQKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVK 791 Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515 T + ++ + E I L+ +L G + Y++ Q+E EK + R ++ Sbjct: 792 TFVREYDKATVREAI--LREIL-RGGQVYYLHNQVETIEKAAQDIRELLPE--------- 839 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + + HG+M + + E VM F + +L+ TT+IE GIDV A+ I+I+ A+HFGLAQ Sbjct: 840 ARVVTAHGQMRERELERVMSDFYHQRFNVLVCTTIIETGIDVPSANTILIDRADHFGLAQ 899 Query: 576 LHQLRGRVGRGEEISSCILLY-HPPL-SKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630 LHQLRGRVGR + L+ HP L + ++ RL + ED GF++A +DL+ R Sbjct: 900 LHQLRGRVGRSHHQAYAYLMTPHPKLMTVDARKRLEAIDALEDLGAGFMLATQDLEIRGA 959 Query: 631 GEILGIKQSG 640 GE+LG +QSG Sbjct: 960 GELLGDEQSG 969 >gi|194397105|ref|YP_002036727.1| transcription-repair coupling factor [Streptococcus pneumoniae G54] gi|194356772|gb|ACF55220.1| transcription-repair coupling factor [Streptococcus pneumoniae G54] Length = 1169 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 152/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +I++I +DM M R+L GDVG GKT VA+ A AV Q VI+ P Sbjct: 610 PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY K+ QN + V++++ + + LE++ +GQ I+IGTH + Sbjct: 670 TTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 730 VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R P++T ++ N D VI VL E G + Y++ +++ ++V++ Sbjct: 790 TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837 Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E +SI +HGRMS++ E+ + F G +L+ TT+IE G+D+ +A+ + I Sbjct: 838 VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620 ENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF I Sbjct: 898 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 A DL R G +LG QSG + EL+ LLE IA+++ Sbjct: 958 AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000 >gi|149003146|ref|ZP_01828055.1| transcription-repair coupling factor [Streptococcus pneumoniae SP14-BS69] gi|237651085|ref|ZP_04525337.1| transcription-repair coupling factor [Streptococcus pneumoniae CCRI 1974] gi|237821198|ref|ZP_04597043.1| transcription-repair coupling factor [Streptococcus pneumoniae CCRI 1974M2] gi|147758887|gb|EDK65883.1| transcription-repair coupling factor [Streptococcus pneumoniae SP14-BS69] Length = 1169 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 152/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +I++I +DM M R+L GDVG GKT VA+ A AV Q VI+ P Sbjct: 610 PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY K+ QN + V++++ + + LE++ +GQ I+IGTH + Sbjct: 670 TTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 730 VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R P++T ++ N D VI VL E G + Y++ +++ ++V++ Sbjct: 790 TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837 Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E +SI +HGRMS++ E+ + F G +L+ TT+IE G+D+ +A+ + I Sbjct: 838 VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620 ENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF I Sbjct: 898 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 A DL R G +LG QSG + EL+ LLE IA+++ Sbjct: 958 AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000 >gi|251789258|ref|YP_003003979.1| transcription-repair coupling factor [Dickeya zeae Ech1591] gi|247537879|gb|ACT06500.1| transcription-repair coupling factor [Dickeya zeae Ech1591] Length = 1150 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 146/386 (37%), Positives = 216/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM + M R++ GDVG GKT VA+ A AVE Sbjct: 592 QLFCQGFPFDTTPDQAQAINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 651 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQH++ + N + +++++ Q + + LE+ G+ I+IGT Sbjct: 652 QVAVLVPTTLLAQQHFDNFRDRFANWPVRIDMLSRFRSQKEQAQVLEQTQDGKVDILIGT 711 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 712 HKLLQSDVRWRDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGI 771 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 772 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAMLREILRGGQVYYLYNDVE-----N 822 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 +R + L + IAI HG+M + D E VM+ F + +L+ TT+IE GID+ + Sbjct: 823 IDKATQRLSELVPE--ARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPN 880 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL P +S +++ RL + + ED Sbjct: 881 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSSDAHKRLEAIASLEDL 940 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 941 GAGFALATHDLEIRGAGELLGEDQSG 966 >gi|327481347|gb|AEA84657.1| transcription-repair coupling protein Mfd [Pseudomonas stutzeri DSM 4166] Length = 1145 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 144/380 (37%), Positives = 216/380 (56%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q++AI + +D+ M R++ GDVG GKT VA+ A AV G Q ++ Sbjct: 592 GFPFEETPDQQAAIDAVREDLLSAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAVL 651 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ + A+ +A G+ I+IGTH L Q Sbjct: 652 VPTTLLAQQHYNSFRDRFADWPVRVEVMSRFKSAKEVQNAITELADGKIDILIGTHKLLQ 711 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D +++ L LVI+DE+HRFGV+Q+ +L + +L +TATPIPRTL ++ G D+S Sbjct: 712 DDVKFSNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMSIAGMRDLSI 771 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R ++T ++ N + E L L G + Y++ ++ EK ++ +++V Sbjct: 772 IATPPARRLSVRTFVMEANN-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLQTLVP 830 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + IAI HG+M + D E VM F + +L+A+T+IE GIDV A+ III Sbjct: 831 E---------ARIAIGHGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIII 881 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL P ++ ++ RL + N +D GF++ Sbjct: 882 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKAMTDDAQKRLEAIANAQDLGAGFVL 941 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 942 ATHDLEIRGAGELLGEGQSG 961 >gi|221134655|ref|ZP_03560958.1| transcription-repair coupling factor [Glaciecola sp. HTCC2999] Length = 1170 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 151/391 (38%), Positives = 217/391 (55%), Gaps = 29/391 (7%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 +K + PF T QE AI +L DM + M R++ GDVG GKT VA+ A A AG Sbjct: 611 KKFADSFPFPETPDQEQAINAVLNDMGMPSAMDRLVCGDVGFGKTEVAMRAAFIAANAGK 670 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQ---NTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378 Q I+ P +LAQQH+E F+ ++ N Q++ ++ +R LE + G I Sbjct: 671 QVSILVPTTLLAQQHFENFVDRFADWPFNIQVLSRFVSAK----DQRAVLEGVKSGHVDI 726 Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438 ++GTH L Q+ +++ L LVI+DE+HRFGV+Q+ K +L +TATPIPRTL + Sbjct: 727 VVGTHKLIQNDVKFADLGLVIIDEEHRFGVRQKDKFKALRADVDILTLTATPIPRTLNMA 786 Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498 G D+S I PA R PIKT + N + + E + + G + Y++ Sbjct: 787 MSGMRDLSIIATPPAKRLPIKTFVQKRNH-ETIREAVMREILRGGQVYFL---------H 836 Query: 499 NFRSVVERFNSLHEHFT----SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554 N + +E N++ E + IAI HG+M + + E VMD F + +L+ TT+IE G Sbjct: 837 NDVATIE--NTMQELTDIIPEARIAIGHGQMRERELEQVMDDFYHQRYNVLLCTTIIETG 894 Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK 612 IDV A+ II++ A+H GLAQLHQLRGRVGR + LL P ++K+S RL + Sbjct: 895 IDVPSANTIIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPRRMTKDSIKRLEAIA 954 Query: 613 NTED---GFLIAEEDLKQRKEGEILGIKQSG 640 + ED GF +A DL+ R GE+LG QSG Sbjct: 955 SLEDLGAGFALATHDLEIRGAGELLGDGQSG 985 >gi|77407708|ref|ZP_00784463.1| reticulocyte binding protein [Streptococcus agalactiae COH1] gi|77173707|gb|EAO76821.1| reticulocyte binding protein [Streptococcus agalactiae COH1] Length = 1165 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 160/459 (34%), Positives = 250/459 (54%), Gaps = 30/459 (6%) Query: 224 ARERLA--YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281 A++R+A +++ + L R Q + G + + + + + T+ Q +I Sbjct: 564 AKQRVAKQVEDIADDLLKLYAERSQLQ---GFAFSPDDNMQNDFDNDFAYVETEDQLRSI 620 Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341 K+I QDM M R+L GDVG GKT VA+ A AV Q ++ P +LAQQH+E Sbjct: 621 KEIKQDMEGNRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHFENF 680 Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401 K+ N + V++++ + + L+R++ GQ IIIGTH L + + L L+++D Sbjct: 681 KERFSNYPVTVDVLSRFRSKKEQTDTLKRLSKGQVDIIIGTHRLLSQDVVFSDLGLIVID 740 Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461 E+ RFGV+ + KL + T VL +TATPIPRTL ++ LG D+S I P R P++T Sbjct: 741 EEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTY 800 Query: 462 IIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSS 517 ++ N + E I R + G + +++ +++ E+K S + +V +S Sbjct: 801 VLETNPGLVREAIIR---EIDRGGQVFYVYNKVDTIEQKVSELQELVPE---------AS 848 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 I +HG+MS+I E+ + F NG +L+ATT+IE G+D+ + + + +ENA+H GL+ L+ Sbjct: 849 IGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFVENADHMGLSTLY 908 Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGE 632 QLRGRVGR I+ L+Y P L++ S RL +K TE GF IA DL R G Sbjct: 909 QLRGRVGRSNRIAYAYLMYRPDKVLTEISEKRLDAIKGFTELGSGFKIAMRDLSIRGAGN 968 Query: 633 ILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669 ILG QSG + E++ LLE IA K K ++ Q Sbjct: 969 ILGASQSGFIDSV--GFEMYSQLLEQAIATKQGKSLIRQ 1005 >gi|146282996|ref|YP_001173149.1| transcription-repair coupling protein Mfd [Pseudomonas stutzeri A1501] gi|145571201|gb|ABP80307.1| transcription-repair coupling protein Mfd [Pseudomonas stutzeri A1501] Length = 1148 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 144/380 (37%), Positives = 216/380 (56%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q++AI + +D+ M R++ GDVG GKT VA+ A AV G Q ++ Sbjct: 595 GFPFEETPDQQAAIDAVREDLLSAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAVL 654 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ + A+ +A G+ I+IGTH L Q Sbjct: 655 VPTTLLAQQHYNSFRDRFADWPVRVEVMSRFKSAKEVQNAITELADGKIDILIGTHKLLQ 714 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D +++ L LVI+DE+HRFGV+Q+ +L + +L +TATPIPRTL ++ G D+S Sbjct: 715 DDVKFSNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMSIAGMRDLSI 774 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R ++T ++ N + E L L G + Y++ ++ EK ++ +++V Sbjct: 775 IATPPARRLSVRTFVMEANN-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLQALVP 833 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + IAI HG+M + D E VM F + +L+A+T+IE GIDV A+ III Sbjct: 834 E---------ARIAIGHGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIII 884 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL P ++ ++ RL + N +D GF++ Sbjct: 885 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKAMTDDAQKRLEAIANAQDLGAGFVL 944 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 945 ATHDLEIRGAGELLGEGQSG 964 >gi|183179491|ref|ZP_02957702.1| transcription-repair coupling factor [Vibrio cholerae MZO-3] gi|183012902|gb|EDT88202.1| transcription-repair coupling factor [Vibrio cholerae MZO-3] Length = 1155 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 148/383 (38%), Positives = 214/383 (55%), Gaps = 23/383 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI +L DM Q M R++ GDVG GKT VA+ A A + G Q ++ Sbjct: 601 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 660 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ +++ L+ +A G+ I++GTH L Sbjct: 661 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLS 720 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 721 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 780 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502 I PA R IKT + D VI + VL E G + Y++ Q+E +K ++ Sbjct: 781 IATPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEK 836 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 +V + I + HG+M + + E VM+ F + LL+ TT+IE GIDV A+ Sbjct: 837 LVPE---------ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 887 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617 II++ A+ GLAQLHQLRGRVGR + LL PP ++K++ RL + + ED G Sbjct: 888 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAG 947 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F +A DL+ R GE+LG +QSG Sbjct: 948 FTLATHDLEIRGAGELLGEEQSG 970 >gi|229520346|ref|ZP_04409772.1| transcription-repair coupling factor [Vibrio cholerae TM 11079-80] gi|229342712|gb|EEO07704.1| transcription-repair coupling factor [Vibrio cholerae TM 11079-80] Length = 1157 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 148/383 (38%), Positives = 214/383 (55%), Gaps = 23/383 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI +L DM Q M R++ GDVG GKT VA+ A A + G Q ++ Sbjct: 603 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 662 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ +++ L+ +A G+ I++GTH L Sbjct: 663 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLS 722 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 723 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 782 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502 I PA R IKT + D VI + VL E G + Y++ Q+E +K ++ Sbjct: 783 IATPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEK 838 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 +V + I + HG+M + + E VM+ F + LL+ TT+IE GIDV A+ Sbjct: 839 LVPE---------ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 889 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617 II++ A+ GLAQLHQLRGRVGR + LL PP ++K++ RL + + ED G Sbjct: 890 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAG 949 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F +A DL+ R GE+LG +QSG Sbjct: 950 FTLATHDLEIRGAGELLGEEQSG 972 >gi|153825189|ref|ZP_01977856.1| transcription-repair coupling factor [Vibrio cholerae MZO-2] gi|149741168|gb|EDM55219.1| transcription-repair coupling factor [Vibrio cholerae MZO-2] Length = 1155 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 148/383 (38%), Positives = 214/383 (55%), Gaps = 23/383 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI +L DM Q M R++ GDVG GKT VA+ A A + G Q ++ Sbjct: 601 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 660 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ +++ L+ +A G+ I++GTH L Sbjct: 661 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLS 720 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 721 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 780 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502 I PA R IKT + D VI + VL E G + Y++ Q+E +K ++ Sbjct: 781 IATPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEK 836 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 +V + I + HG+M + + E VM+ F + LL+ TT+IE GIDV A+ Sbjct: 837 LVPE---------ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 887 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617 II++ A+ GLAQLHQLRGRVGR + LL PP ++K++ RL + + ED G Sbjct: 888 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAG 947 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F +A DL+ R GE+LG +QSG Sbjct: 948 FTLATHDLEIRGAGELLGEEQSG 970 >gi|229515266|ref|ZP_04404726.1| transcription-repair coupling factor [Vibrio cholerae TMA 21] gi|229347971|gb|EEO12930.1| transcription-repair coupling factor [Vibrio cholerae TMA 21] Length = 1157 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 148/383 (38%), Positives = 214/383 (55%), Gaps = 23/383 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI +L DM Q M R++ GDVG GKT VA+ A A + G Q ++ Sbjct: 603 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 662 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ +++ L+ +A G+ I++GTH L Sbjct: 663 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLS 722 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 723 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 782 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502 I PA R IKT + D VI + VL E G + Y++ Q+E +K ++ Sbjct: 783 IATPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEK 838 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 +V + I + HG+M + + E VM+ F + LL+ TT+IE GIDV A+ Sbjct: 839 LVPE---------ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 889 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617 II++ A+ GLAQLHQLRGRVGR + LL PP ++K++ RL + + ED G Sbjct: 890 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAG 949 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F +A DL+ R GE+LG +QSG Sbjct: 950 FTLATHDLEIRGAGELLGEEQSG 972 >gi|229529092|ref|ZP_04418482.1| transcription-repair coupling factor [Vibrio cholerae 12129(1)] gi|229332866|gb|EEN98352.1| transcription-repair coupling factor [Vibrio cholerae 12129(1)] Length = 1157 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 148/383 (38%), Positives = 214/383 (55%), Gaps = 23/383 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI +L DM Q M R++ GDVG GKT VA+ A A + G Q ++ Sbjct: 603 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 662 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ +++ L+ +A G+ I++GTH L Sbjct: 663 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLS 722 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 723 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 782 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502 I PA R IKT + D VI + VL E G + Y++ Q+E +K ++ Sbjct: 783 IATPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEK 838 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 +V + I + HG+M + + E VM+ F + LL+ TT+IE GIDV A+ Sbjct: 839 LVPE---------ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 889 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617 II++ A+ GLAQLHQLRGRVGR + LL PP ++K++ RL + + ED G Sbjct: 890 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAG 949 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F +A DL+ R GE+LG +QSG Sbjct: 950 FTLATHDLEIRGAGELLGEEQSG 972 >gi|303250575|ref|ZP_07336772.1| transcription repair coupling factor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252980|ref|ZP_07534867.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650563|gb|EFL80722.1| transcription repair coupling factor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859509|gb|EFM91535.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 1149 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 148/380 (38%), Positives = 217/380 (57%), Gaps = 19/380 (5%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 PF T+ Q++AI ++ DM M R++ GDVG GKT VA+ A AVE Q ++ Sbjct: 603 FPFEETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVENHKQVAVLV 662 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQH+E K N I VE+++ ++ LE++A G+ I++GTH L Q+ Sbjct: 663 PTTLLAQQHFENFKDRFANYPINVEVLSRFKTAKEQKAILEKVAEGKVDILVGTHKLLQE 722 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 +Q+ L L+I+DE+HRFGV+Q+ K+ Q +L +TATPIPRTL + D+S I Sbjct: 723 DVQFRDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNSMRDLSVI 782 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505 PA R IKT + + D++I + + +L E G + Y++ + + + Sbjct: 783 ASPPARRLTIKTF---VRQHDDLIVK-EAILREILRGGQVYYLHNDV-----ATIENCAT 833 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L + I I HG+M + + E VM F + LL+ +T+IE GIDV A+ III Sbjct: 834 KLAELVPE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIII 891 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL---SVLKNTEDGFLI 620 E A+ FGLAQLHQLRGRVGR + LL PP L+K++ RL S + N GF++ Sbjct: 892 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKALTKDAQQRLEAISSIDNLGAGFVL 951 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG +QSG Sbjct: 952 ATHDLEIRGAGELLGAEQSG 971 >gi|293404403|ref|ZP_06648397.1| transcription-repair coupling factor [Escherichia coli FVEC1412] gi|298380180|ref|ZP_06989785.1| transcription-repair coupling factor [Escherichia coli FVEC1302] gi|300896877|ref|ZP_07115367.1| transcription-repair coupling factor [Escherichia coli MS 198-1] gi|291428989|gb|EFF02014.1| transcription-repair coupling factor [Escherichia coli FVEC1412] gi|298279878|gb|EFI21386.1| transcription-repair coupling factor [Escherichia coli FVEC1302] gi|300359284|gb|EFJ75154.1| transcription-repair coupling factor [Escherichia coli MS 198-1] Length = 1164 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 149/386 (38%), Positives = 216/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G +AY++ +E N Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQAYYLYNDVE-----N 837 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981 >gi|229508016|ref|ZP_04397521.1| transcription-repair coupling factor [Vibrio cholerae BX 330286] gi|229511745|ref|ZP_04401224.1| transcription-repair coupling factor [Vibrio cholerae B33] gi|229518883|ref|ZP_04408326.1| transcription-repair coupling factor [Vibrio cholerae RC9] gi|229607563|ref|YP_002878211.1| transcription-repair coupling factor [Vibrio cholerae MJ-1236] gi|229343572|gb|EEO08547.1| transcription-repair coupling factor [Vibrio cholerae RC9] gi|229351710|gb|EEO16651.1| transcription-repair coupling factor [Vibrio cholerae B33] gi|229355521|gb|EEO20442.1| transcription-repair coupling factor [Vibrio cholerae BX 330286] gi|229370218|gb|ACQ60641.1| transcription-repair coupling factor [Vibrio cholerae MJ-1236] Length = 1157 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 148/383 (38%), Positives = 214/383 (55%), Gaps = 23/383 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI +L DM Q M R++ GDVG GKT VA+ A A + G Q ++ Sbjct: 603 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 662 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ +++ L+ +A G+ I++GTH L Sbjct: 663 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLS 722 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 723 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 782 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502 I PA R IKT + D VI + VL E G + Y++ Q+E +K ++ Sbjct: 783 IATPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEK 838 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 +V + I + HG+M + + E VM+ F + LL+ TT+IE GIDV A+ Sbjct: 839 LVPE---------ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 889 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617 II++ A+ GLAQLHQLRGRVGR + LL PP ++K++ RL + + ED G Sbjct: 890 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAG 949 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F +A DL+ R GE+LG +QSG Sbjct: 950 FTLATHDLEIRGAGELLGEEQSG 972 >gi|293391342|ref|ZP_06635676.1| transcription-repair coupling factor [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951876|gb|EFE01995.1| transcription-repair coupling factor [Aggregatibacter actinomycetemcomitans D7S-1] Length = 1152 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 146/409 (35%), Positives = 234/409 (57%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + + G + + Q+ PF T Q AI ++ DM+Q M R++ Sbjct: 574 LLDVYAQREAQKGFSFQYDREEFQQFTATFPFEETHDQLMAINAVISDMTQPKAMDRLVC 633 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQH++ K N + VE+++ Sbjct: 634 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHFDNFKDRFANLPVNVEMLSRFK 693 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +++ ++ +A G+ I+IGTH + Q +Q++ L L+I+DE+HRFGV+Q+ K+ Q Sbjct: 694 TAKEQKRVIQDLADGKVDILIGTHKIIQGDVQFHDLGLLIIDEEHRFGVRQKEKMKQLRA 753 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I+ PA R IKT + + D+++ R + +L Sbjct: 754 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLTIKTF---VRQTDDLVIR-EAIL 809 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ + ++ + E+ +L + + + HG+M + + E VM Sbjct: 810 REILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVTVGHGQMRERELERVMSD 862 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ +T+IE GIDV A+ IIIE A++FGLAQLHQLRGRVGR + LL Sbjct: 863 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADNFGLAQLHQLRGRVGRSHHQAYAYLLT 922 Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 PP ++K++ RL L++ ++ GF++A DL+ R GE+LG +QSG Sbjct: 923 PPPKLMTKDAQKRLEALESLDNLGAGFILATHDLEIRGAGELLGNEQSG 971 >gi|218704525|ref|YP_002412044.1| transcription-repair coupling factor [Escherichia coli UMN026] gi|218431622|emb|CAR12501.1| transcription-repair coupling factor [Escherichia coli UMN026] Length = 1148 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 149/386 (38%), Positives = 216/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G +AY++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQAYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|325282867|ref|YP_004255408.1| transcription factor CarD [Deinococcus proteolyticus MRP] gi|324314676|gb|ADY25791.1| transcription factor CarD [Deinococcus proteolyticus MRP] Length = 1054 Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 144/402 (35%), Positives = 222/402 (55%), Gaps = 36/402 (8%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 ++I +N + T Q +A+K+ L+D+ + N R++ GDVG GKT VAL A V G Sbjct: 493 EQIEQNFAYELTADQRTALKETLRDLEKANPADRLISGDVGFGKTEVALRAAHRVVGHGA 552 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LA QH + ++ + + VE ++ R+ L +A G+ I+IGT Sbjct: 553 QVAMLVPTTLLADQHLQTFRERLKGLPVRVEGLSRFTSDKEAREILSGLAAGRVDIVIGT 612 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP-----------------HVLL 425 H L I++ L L+IVDE+HRFGV Q+ KL P L Sbjct: 613 HRLLSGDIEFKNLGLIIVDEEHRFGVGQKEKLRAMRGLPSTPEGGKLELPEGTKVVDTLA 672 Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGK 483 ++ATPIPRTL ++ +G D+S I P GRKPI+TV+ P D V R +V + G Sbjct: 673 LSATPIPRTLYMSMVGLRDMSSIQTPPKGRKPIQTVLTP---FDPVTVRDAIVSEIERGG 729 Query: 484 KAYWICPQIEE--KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541 K ++I +I + RS+V + I + HGRMS+ + E +M F+ G Sbjct: 730 KVFYIHDRIASIGARSLYLRSLVPE---------ARIGVAHGRMSEEELEEIMKGFEEGA 780 Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601 +L++TT++E G+D+ +A+ I+IE A+ GLAQL+QLRGRVGR E+ + L Y P ++ Sbjct: 781 FDVLLSTTIVETGLDIPEANTILIERADRLGLAQLYQLRGRVGRREQTAYAYLFYPPRMT 840 Query: 602 KNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 +N+ RL + + +D G L+AE+D++ R G ILG +Q G Sbjct: 841 ENAQRRLWAIADLQDLGSGHLLAEKDMEIRGVGNILGEEQHG 882 >gi|50120752|ref|YP_049919.1| transcription-repair coupling factor [Pectobacterium atrosepticum SCRI1043] gi|49611278|emb|CAG74725.1| transcription-repair coupling factor [Pectobacterium atrosepticum SCRI1043] Length = 1149 Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 147/386 (38%), Positives = 212/386 (54%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 591 QLFCESFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQH++ + N + +E+I+ + + L+ G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHFDNFRDRFANWPVKIEMISRFRSAREQTQILKETQEGKVDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q + ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVHWHDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDNLMVR-EAILRETLRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 +R L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IEKATQRLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPS 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL PP +S ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAMSTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGDDQSG 965 >gi|301793331|emb|CBW35690.1| putative putative transcription-repair coupling factor [Streptococcus pneumoniae INV104] Length = 1169 Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 151/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +I++I +DM M R+L GDVG GKT VA+ A AV Q VI+ P Sbjct: 610 PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY K+ QN + +++++ + + LE++ +GQ I+IGTH + Sbjct: 670 TTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 730 VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R P++T ++ N D VI VL E G + Y++ +++ ++V++ Sbjct: 790 TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837 Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E +SI +HGRMS++ E+ + F G +L+ TT+IE G+D+ +A+ + I Sbjct: 838 VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620 ENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF I Sbjct: 898 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 A DL R G +LG QSG + EL+ LLE IA+++ Sbjct: 958 AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000 >gi|113461304|ref|YP_719373.1| transcription-repair coupling factor [Haemophilus somnus 129PT] gi|112823347|gb|ABI25436.1| transcription-repair coupling factor [Haemophilus somnus 129PT] Length = 1143 Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 150/415 (36%), Positives = 238/415 (57%), Gaps = 21/415 (5%) Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 +A ++ + +++ KK G + + ++ PF T Q+ AI ++ DM Q+ Sbjct: 564 VAAELLDVYAQREVKK--GFAFQYDKEEFKQFAATFPFEETPDQKMAINAVISDMCQEKA 621 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R++ GDVG GKT VA+ A AV Q ++ P +LAQQHYE K N + VE Sbjct: 622 MDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVE 681 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 +++ +++ L+ + G+ I+IGTH L Q +++ L L+I+DE+HRFGV Q+ K Sbjct: 682 MLSRFRTAKEQKQILQHLNEGKIDILIGTHKLIQSEVKFSDLGLLIIDEEHRFGVSQKEK 741 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 + Q T +L +TATPIPRTL + G D+S I+ PA R IKT + ++D++I Sbjct: 742 IKQLRTNIDILTLTATPIPRTLNMAMSGIRDLSIISTPPARRLSIKTF---VRQVDDLII 798 Query: 474 RLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530 R + VL E G + Y++ + ++ + E+ +L + + + HG+M + + Sbjct: 799 R-EAVLREILRGGQVYYLHNDV-----ASIENCAEKLTALVPE--ARVVVGHGQMREREL 850 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 E VM F + +L+ +T+IE GIDV A+ IIIE A++FGLAQLHQLRGRVGR + Sbjct: 851 ERVMSDFYHQRFNVLVCSTIIETGIDVPTANTIIIERADNFGLAQLHQLRGRVGRSHHQA 910 Query: 591 SCILLY-HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 LL HP ++K++ RL L++ ++ GF++A DL+ R GE+LG +QSG Sbjct: 911 YAYLLTPHPKAMTKDAVKRLEALESLDNLGAGFILATHDLEIRGAGELLGNEQSG 965 >gi|221230954|ref|YP_002510106.1| transcription-repair coupling factor [Streptococcus pneumoniae ATCC 700669] gi|225853617|ref|YP_002735129.1| transcription-repair coupling factor [Streptococcus pneumoniae JJA] gi|220673414|emb|CAR67872.1| putative putative transcription-repair coupling factor [Streptococcus pneumoniae ATCC 700669] gi|225722629|gb|ACO18482.1| transcription-repair coupling factor [Streptococcus pneumoniae JJA] Length = 1169 Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 151/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +I++I +DM M R+L GDVG GKT VA+ A AV Q VI+ P Sbjct: 610 PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY K+ QN + +++++ + + LE++ +GQ I+IGTH + Sbjct: 670 TTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 730 VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R P++T ++ N D VI VL E G + Y++ +++ ++V++ Sbjct: 790 TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837 Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E +SI +HGRMS++ E+ + F G +L+ TT+IE G+D+ +A+ + I Sbjct: 838 VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620 ENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF I Sbjct: 898 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 A DL R G +LG QSG + EL+ LLE IA+++ Sbjct: 958 AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000 >gi|225860052|ref|YP_002741561.1| transcription-repair coupling factor [Streptococcus pneumoniae Taiwan19F-14] gi|298229483|ref|ZP_06963164.1| transcription-repair coupling factor [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255135|ref|ZP_06978721.1| transcription-repair coupling factor [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501796|ref|YP_003723736.1| transcription-repair coupling factor [Streptococcus pneumoniae TCH8431/19A] gi|225727732|gb|ACO23583.1| transcription-repair coupling factor [Streptococcus pneumoniae Taiwan19F-14] gi|298237391|gb|ADI68522.1| transcription-repair coupling factor [Streptococcus pneumoniae TCH8431/19A] gi|327388991|gb|EGE87339.1| transcription-repair coupling factor [Streptococcus pneumoniae GA04375] Length = 1169 Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 151/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +I++I +DM M R+L GDVG GKT VA+ A AV Q VI+ P Sbjct: 610 PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY K+ QN + +++++ + + LE++ +GQ I+IGTH + Sbjct: 670 TTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 730 VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R P++T ++ N D VI VL E G + Y++ +++ ++V++ Sbjct: 790 TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837 Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E +SI +HGRMS++ E+ + F G +L+ TT+IE G+D+ +A+ + I Sbjct: 838 VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620 ENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF I Sbjct: 898 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 A DL R G +LG QSG + EL+ LLE IA+++ Sbjct: 958 AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000 >gi|149020164|ref|ZP_01835138.1| transcription-repair coupling factor [Streptococcus pneumoniae SP23-BS72] gi|147930842|gb|EDK81823.1| transcription-repair coupling factor [Streptococcus pneumoniae SP23-BS72] Length = 1169 Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 149/405 (36%), Positives = 228/405 (56%), Gaps = 25/405 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +I++I +DM M R+L GDVG GKT VA+ A AV Q VI+ P Sbjct: 610 PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY K+ QN + +++++ + + LE++ +GQ I+IGTH + Sbjct: 670 TTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 730 VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R P++T ++ N D VI VL E G + Y++ +++ ++V++ Sbjct: 790 TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837 Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E +SI +HGRMS++ E+ + F G +L+ TT+IE G+D+ +A+ + I Sbjct: 838 VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 ENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K + GF I Sbjct: 898 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGFGFKI 957 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 A DL R G +LG QSG + EL+ LLE IA+++ Sbjct: 958 AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000 >gi|332199073|gb|EGJ13154.1| transcription-repair coupling factor [Streptococcus pneumoniae GA47901] Length = 1169 Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 151/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +I++I +DM M R+L GDVG GKT VA+ A AV Q VI+ P Sbjct: 610 PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY K+ QN + +++++ + + LE++ +GQ I+IGTH + Sbjct: 670 TTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 730 VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R P++T ++ N D VI VL E G + Y++ +++ ++V++ Sbjct: 790 TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837 Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E +SI +HGRMS++ E+ + F G +L+ TT+IE G+D+ +A+ + I Sbjct: 838 VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620 ENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF I Sbjct: 898 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 A DL R G +LG QSG + EL+ LLE IA+++ Sbjct: 958 AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000 >gi|225857815|ref|YP_002739325.1| transcription-repair coupling factor [Streptococcus pneumoniae 70585] gi|225720446|gb|ACO16300.1| transcription-repair coupling factor [Streptococcus pneumoniae 70585] Length = 1169 Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 151/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +I++I +DM M R+L GDVG GKT VA+ A AV Q VI+ P Sbjct: 610 PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY K+ QN + +++++ + + LE++ +GQ I+IGTH + Sbjct: 670 TTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 730 VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R P++T ++ N D VI VL E G + Y++ +++ ++V++ Sbjct: 790 TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837 Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E +SI +HGRMS++ E+ + F G +L+ TT+IE G+D+ +A+ + I Sbjct: 838 VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620 ENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF I Sbjct: 898 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 A DL R G +LG QSG + EL+ LLE IA+++ Sbjct: 958 AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000 >gi|148993579|ref|ZP_01823050.1| transcription-repair coupling factor [Streptococcus pneumoniae SP9-BS68] gi|168489341|ref|ZP_02713540.1| transcription-repair coupling factor [Streptococcus pneumoniae SP195] gi|147927800|gb|EDK78822.1| transcription-repair coupling factor [Streptococcus pneumoniae SP9-BS68] gi|183572243|gb|EDT92771.1| transcription-repair coupling factor [Streptococcus pneumoniae SP195] gi|332071709|gb|EGI82202.1| transcription-repair coupling factor [Streptococcus pneumoniae GA17570] Length = 1174 Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 151/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +I++I +DM M R+L GDVG GKT VA+ A AV Q VI+ P Sbjct: 610 PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY K+ QN + +++++ + + LE++ +GQ I+IGTH + Sbjct: 670 TTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 730 VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R P++T ++ N D VI VL E G + Y++ +++ ++V++ Sbjct: 790 TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837 Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E +SI +HGRMS++ E+ + F G +L+ TT+IE G+D+ +A+ + I Sbjct: 838 VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620 ENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF I Sbjct: 898 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 A DL R G +LG QSG + EL+ LLE IA+++ Sbjct: 958 AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000 >gi|15899955|ref|NP_344559.1| transcription-repair coupling factor [Streptococcus pneumoniae TIGR4] gi|111658624|ref|ZP_01409274.1| hypothetical protein SpneT_02000214 [Streptococcus pneumoniae TIGR4] gi|14971470|gb|AAK74199.1| transcription-repair coupling factor [Streptococcus pneumoniae TIGR4] Length = 1169 Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 151/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +I++I +DM M R+L GDVG GKT VA+ A AV Q VI+ P Sbjct: 610 PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY K+ QN + +++++ + + LE++ +GQ I+IGTH + Sbjct: 670 TTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 730 VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R P++T ++ N D VI VL E G + Y++ +++ ++V++ Sbjct: 790 TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837 Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E +SI +HGRMS++ E+ + F G +L+ TT+IE G+D+ +A+ + I Sbjct: 838 VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620 ENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF I Sbjct: 898 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 A DL R G +LG QSG + EL+ LLE IA+++ Sbjct: 958 AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000 >gi|332071328|gb|EGI81823.1| transcription-repair coupling factor [Streptococcus pneumoniae GA17545] Length = 1169 Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 151/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +I++I +DM M R+L GDVG GKT VA+ A AV Q VI+ P Sbjct: 610 PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY K+ QN + +++++ + + LE++ +GQ I+IGTH + Sbjct: 670 TTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 730 VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R P++T ++ N D VI VL E G + Y++ +++ ++V++ Sbjct: 790 TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837 Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E +SI +HGRMS++ E+ + F G +L+ TT+IE G+D+ +A+ + I Sbjct: 838 VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620 ENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF I Sbjct: 898 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 A DL R G +LG QSG + EL+ LLE IA+++ Sbjct: 958 AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000 >gi|149007710|ref|ZP_01831319.1| transcription-repair coupling factor [Streptococcus pneumoniae SP18-BS74] gi|307126180|ref|YP_003878211.1| transcription-repair coupling factor [Streptococcus pneumoniae 670-6B] gi|147760705|gb|EDK67677.1| transcription-repair coupling factor [Streptococcus pneumoniae SP18-BS74] gi|306483242|gb|ADM90111.1| transcription-repair coupling factor [Streptococcus pneumoniae 670-6B] Length = 1169 Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 151/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +I++I +DM M R+L GDVG GKT VA+ A AV Q VI+ P Sbjct: 610 PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY K+ QN + +++++ + + LE++ +GQ I+IGTH + Sbjct: 670 TTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 730 VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R P++T ++ N D VI VL E G + Y++ +++ ++V++ Sbjct: 790 TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837 Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E +SI +HGRMS++ E+ + F G +L+ TT+IE G+D+ +A+ + I Sbjct: 838 VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620 ENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF I Sbjct: 898 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 A DL R G +LG QSG + EL+ LLE IA+++ Sbjct: 958 AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000 >gi|262171148|ref|ZP_06038826.1| transcription-repair coupling factor [Vibrio mimicus MB-451] gi|261892224|gb|EEY38210.1| transcription-repair coupling factor [Vibrio mimicus MB-451] Length = 1156 Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 147/383 (38%), Positives = 214/383 (55%), Gaps = 23/383 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI +L DM Q M R++ GDVG GKT VA+ A A + G Q ++ Sbjct: 601 TFPFEETDDQAMAINAVLSDMCQPKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 660 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ +++ L+ +A G+ I++GTH L Sbjct: 661 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLS 720 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 721 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 780 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502 I PA R IKT + D VI + VL E G + Y++ Q+E +K ++ Sbjct: 781 IATPPARRLAIKTFV--RQSEDSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEK 836 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 +V + + + HG+M + + E VM+ F + LL+ TT+IE GIDV A+ Sbjct: 837 LVPE---------ARVTVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 887 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617 II++ A+ GLAQLHQLRGRVGR + LL PP ++K++ RL + + ED G Sbjct: 888 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAG 947 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F +A DL+ R GE+LG +QSG Sbjct: 948 FTLATHDLEIRGAGELLGEEQSG 970 >gi|330502559|ref|YP_004379428.1| transcription-repair coupling factor [Pseudomonas mendocina NK-01] gi|328916845|gb|AEB57676.1| transcription-repair coupling factor [Pseudomonas mendocina NK-01] Length = 1145 Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 143/380 (37%), Positives = 215/380 (56%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q++AI + DM M R++ GDVG GKT VA+ A AV +G Q ++ Sbjct: 595 GFPFEETPDQQTAIDAVRNDMLAGKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGKQVAVL 654 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A++++A G+ I+IGTH L Q Sbjct: 655 VPTTLLAQQHYNSFRDRFADWPVKVEVMSRFKSAKEVEGAVQQLAEGKVDIVIGTHKLLQ 714 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D ++++ L LVI+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 715 DDVKFHNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSI 774 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R ++T ++ N+ + E L L G + Y++ ++ EK ++ +V Sbjct: 775 IATPPARRLSVRTFVMEENK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 833 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + I I HG+M + D E VM F + +L+A+T+IE GIDV A+ III Sbjct: 834 E---------ARIGIGHGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIII 884 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL P +++++ RL + +D GF++ Sbjct: 885 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKSMTEDAQKRLEAIAGAQDLGAGFIL 944 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 945 ATHDLEIRGAGELLGDGQSG 964 >gi|308186433|ref|YP_003930564.1| Transcription-repair-coupling factor [Pantoea vagans C9-1] gi|308056943|gb|ADO09115.1| Transcription-repair-coupling factor [Pantoea vagans C9-1] Length = 1154 Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 149/409 (36%), Positives = 226/409 (55%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + + Q + PF T Q AI +L DM Q M R++ Sbjct: 575 LLDIYAQRAAKTGFAFKHDREQYQLFCESFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 634 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AVE Q ++ P +LAQQHY+ + N + +E+++ Sbjct: 635 GDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFR 694 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + LE+ + G+ I+IGTH L ++++ L L+IVDE+HRFGV+ + ++ Sbjct: 695 TAKEQAQVLEQASEGKIDILIGTHKLLMSDLKWHDLGLLIVDEEHRFGVRHKERIKAMRA 754 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I PA R +KT + D+++ R + +L Sbjct: 755 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDDLVIR-EAIL 810 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ +E N +R + L + +AI HG+M + + E VM+ Sbjct: 811 REVLRGGQVYYLYNDVE-----NIEKAAQRLSDLVPE--ARVAIGHGQMRERELERVMND 863 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ TT+IE GID+ A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 864 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 923 Query: 597 -HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 HP ++ +++ RL + + ED GF +A DL+ R GE+LG +QSG Sbjct: 924 PHPKSMTTDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGDEQSG 972 >gi|262189663|ref|ZP_06048040.1| transcription-repair coupling factor [Vibrio cholerae CT 5369-93] gi|262034453|gb|EEY52816.1| transcription-repair coupling factor [Vibrio cholerae CT 5369-93] Length = 699 Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 148/381 (38%), Positives = 214/381 (56%), Gaps = 23/381 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T Q AI +L DM Q M R++ GDVG GKT VA+ A A + G Q ++ P Sbjct: 147 PFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVP 206 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQH+E + N I VE+++ +++ L+ +A G+ I++GTH L Sbjct: 207 TTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSE 266 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S I Sbjct: 267 IRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA 326 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVV 504 PA R IKT + D VI + VL E G + Y++ Q+E +K ++ +V Sbjct: 327 TPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEKLV 382 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + I + HG+M + + E VM+ F + LL+ TT+IE GIDV A+ II Sbjct: 383 PE---------ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTII 433 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFL 619 ++ A+ GLAQLHQLRGRVGR + LL PP ++K++ RL + + ED GF Sbjct: 434 MDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFT 493 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG +QSG Sbjct: 494 LATHDLEIRGAGELLGEEQSG 514 >gi|239993080|ref|ZP_04713604.1| transcription-repair coupling factor [Alteromonas macleodii ATCC 27126] Length = 984 Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 158/428 (36%), Positives = 228/428 (53%), Gaps = 19/428 (4%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 WT ++ +A ++ + R+ K IN + Q + PF T Q Sbjct: 387 WTKAKQKAAEKVRDVAAELLDVYARRAAKPGFAYKINWDDY--QAFSDSFPFEETPDQAQ 444 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI ++ DM + M R++ GDVG GKT VA+ A A AG Q I+ P +LAQQHYE Sbjct: 445 AIAAVMHDMGSPSAMDRLVCGDVGFGKTEVAMRAAFLAANAGKQVAILVPTTLLAQQHYE 504 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 K +E+++ + ++ +ERI G+ I++GTH L I+Y L LVI Sbjct: 505 NFKDRFAAWPFEIEVMSRFVSGKAQKSVVERIGEGKVDIVVGTHKLLSSDIKYKDLGLVI 564 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 +DE+HRFGV+Q+ KL +L +TATPIPRTL + G D+S I PA R IK Sbjct: 565 IDEEHRFGVRQKEKLKSLRADVDILTLTATPIPRTLNMALSGMRDLSIIATAPARRLSIK 624 Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517 T + N+ I E I R + G + Y++ ++ +S R+ E + E + Sbjct: 625 TFVQQRNKAVIREAIMR---EILRGGQVYFLHNEV----DSIARTAEEIAEIVPE---AR 674 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 IA+ HG+M + + E VM F + +L+ TT+IE GIDV A+ II++ A+H GLAQLH Sbjct: 675 IAVGHGQMRERELEGVMSDFYHQRYNVLVCTTIIETGIDVPSANTIIMDRADHLGLAQLH 734 Query: 578 QLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632 QLRGRVGR + LL HP ++K++ RL + ED GF +A DL+ R GE Sbjct: 735 QLRGRVGRSHHQAYAYLLTPHPKRMTKDAVKRLEAISQLEDLGAGFALATHDLEIRGAGE 794 Query: 633 ILGIKQSG 640 +LG QSG Sbjct: 795 LLGDDQSG 802 >gi|314937290|ref|ZP_07844632.1| transcription-repair coupling factor [Staphylococcus hominis subsp. hominis C80] gi|313654586|gb|EFS18336.1| transcription-repair coupling factor [Staphylococcus hominis subsp. hominis C80] Length = 1169 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 155/417 (37%), Positives = 232/417 (55%), Gaps = 21/417 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I++I +DM ++ M R+L GDVG GKT VA+ A AV G Q + Sbjct: 615 DFPYELTPDQAKSIEEIKEDMEKERPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 674 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++I+ R+ E + G II+GTH L Sbjct: 675 VPTTILAQQHYETLIERMQDFPVEIQLISRFRTAKEVRETKEGLKSGYVDIIVGTHKLLS 734 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ T VL +TATPIPRTL ++ LG D+S Sbjct: 735 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKTNVDVLTLTATPIPRTLHMSMLGVRDLSV 794 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 795 IETPPENRFPVQTYVLEQNSNFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 843 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF NG +L+ TT+IE G+DV +A+ +I Sbjct: 844 KREQLQMLMPEANIAVAHGQMTERDLEETMLSFINGEYDILVTTTIIETGVDVPNANTLI 903 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFL 619 IE A+HFGL+QL+QLRGRVGR I L+ + L++ + RL +K TE GF Sbjct: 904 IEEADHFGLSQLYQLRGRVGRSSRIGYAYFLHSTNKVLTETAEERLQAIKEFTELGSGFK 963 Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676 IA DL R G +LG +Q G + +L+ +LE A + + I + PD V Sbjct: 964 IAMRDLNIRGAGNLLGKQQHGFIDSV--GFDLYSQMLEEAVNEKRGITEEVPDAPDV 1018 >gi|213622278|ref|ZP_03375061.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 281 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 121/261 (46%), Positives = 171/261 (65%), Gaps = 2/261 (0%) Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 K Q+ PH L+MTATPIPRTL +T+ D+D S I E P GR P+ TV IP R E+I Sbjct: 1 KGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEII 60 Query: 473 ERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530 +R++ +EG++AYW+C IEE ++ + L +I ++HGRM +K Sbjct: 61 DRVRNACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEK 120 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 ++VM +FK G LL+ATTVIEVG+DV +AS++IIEN E GLAQLHQLRGRVGRG S Sbjct: 121 QAVMQAFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVAS 180 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 C+LLY PLSK + RL VL+++ DGF+IA++DL+ R GE+LG +Q+G +F +A Sbjct: 181 HCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLL 240 Query: 651 LHDSLLEIARKDAKHILTQDP 671 +++ ++ A+HI + P Sbjct: 241 RDQAMIPEVQRIARHIHERYP 261 >gi|114047309|ref|YP_737859.1| transcription-repair coupling factor [Shewanella sp. MR-7] gi|113888751|gb|ABI42802.1| transcription-repair coupling factor [Shewanella sp. MR-7] Length = 1160 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 153/417 (36%), Positives = 231/417 (55%), Gaps = 25/417 (5%) Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 +A ++ + R+Q + IN E + AQ + PF T QESAI +L DM Sbjct: 574 VAAELLDVYARRQARPGESCDINDE-EYAQ-FAQGFPFEETVDQESAIHAVLADMQSPVA 631 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R++ GDVG GKT VA+ A AV AG Q V++ P +LAQQHYE K + +++E Sbjct: 632 MDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVVLVPTTLLAQQHYENFKDRFADWPVVIE 691 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 +++ + + L+++ G+ I+IGTH L Q ++ L L+I+DE+HRFGV+Q+ K Sbjct: 692 VMSRFRTAKEQTQVLKQLEEGKVDIVIGTHKLLQSEAKFENLGLLIIDEEHRFGVRQKEK 751 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 + +L +TATPIPRTL + G D+S I PA R +KT + R + Sbjct: 752 IKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFV----RESDPAT 807 Query: 474 RLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528 + +L E G + Y++ +E EK + +++ + + + HG+M + Sbjct: 808 VREAILREILRGGQVYYLHNNVETIEKCAQDISTLLPE---------ARVVVAHGQMRER 858 Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588 D E VM F + +L+ TT+IE GIDV A+ IIIE A+ FGLAQLHQLRGRVGR Sbjct: 859 DLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQLHQLRGRVGRSHH 918 Query: 589 ISSCILLY-HPP-LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 + L+ HP ++ ++ RL + ED GF++A +DL+ R GE+LG +QSG Sbjct: 919 QAYAYLMTPHPKRMTSDARKRLEAIDALEDLGAGFMLATQDLEIRGAGELLGDEQSG 975 >gi|307544803|ref|YP_003897282.1| transcription-repair coupling factor [Halomonas elongata DSM 2581] gi|307216827|emb|CBV42097.1| K03723 transcription-repair coupling factor (superfamily II helicase) [Halomonas elongata DSM 2581] Length = 1148 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 141/383 (36%), Positives = 219/383 (57%), Gaps = 23/383 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + PF T Q AI+ +L DM+ M R++ GDVG GKT VA+ A AV +G Q V++ Sbjct: 595 SFPFEETPDQRVAIQSVLADMTAPRPMDRVVCGDVGFGKTEVAMRAAFLAVHSGRQVVVL 654 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LA+QHYE + +T + +E+++ + A++RI G+A I+IGTH L Sbjct: 655 VPTTLLARQHYENFRDRFADTAVNIELVSRFTSGQGQSAAMQRIEDGRADIVIGTHKLLS 714 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 S+++ + L+I+DE+HRFGV Q+ +L Q +L +TATPIPRTL + G D+S Sbjct: 715 KSMRFANMGLLIIDEEHRFGVAQKERLKQLRAEVDILTLTATPIPRTLNMAMSGIRDLSI 774 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502 I PA R +KT + R + VI+ + +L E G + Y++ +++ E R Sbjct: 775 IATPPARRLSVKTFV--QQRDESVIK--EAILREILRGGQVYFLHNEVKTIETAAETVRE 830 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 +V + + + HG++ + E VM F + +L+ +T+IE GIDV A+ Sbjct: 831 LVP---------DARVGVAHGQLPERSLERVMSDFYHKRFNVLVCSTIIETGIDVPSANT 881 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617 I+I+ A+ FGLAQLHQLRGRVGR + LL PP +++++ RL + +ED G Sbjct: 882 IVIQRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPRAMTRDATKRLEAIAQSEDLGAG 941 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F +A D++ R GE+LG +QSG Sbjct: 942 FTLASHDMEIRGAGELLGDEQSG 964 >gi|291617056|ref|YP_003519798.1| Mfd [Pantoea ananatis LMG 20103] gi|291152086|gb|ADD76670.1| Mfd [Pantoea ananatis LMG 20103] gi|327393507|dbj|BAK10929.1| transcription-repair coupling factor Mfd [Pantoea ananatis AJ13355] Length = 1156 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 146/386 (37%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 598 QLFCESFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNK 657 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+++ + + L+ + G+ I+IGT Sbjct: 658 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAREQNQILQEASEGKIDILIGT 717 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L I+++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 718 HKLLMSDIKWHDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 777 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D+++ R + +L E G + Y++ +E N Sbjct: 778 RDLSIIATPPARRLAVKTF---VREFDDLVIR-EAILREILRGGQVYYLYNDVE-----N 828 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 +R L + +AI HG+M + D E VM+ F + +L+ TT+IE GID+ Sbjct: 829 IEKAAQRLTELVPE--ARVAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPT 886 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 887 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 946 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 947 GAGFALATHDLEIRGAGELLGEEQSG 972 >gi|229523905|ref|ZP_04413310.1| transcription-repair coupling factor [Vibrio cholerae bv. albensis VL426] gi|229337486|gb|EEO02503.1| transcription-repair coupling factor [Vibrio cholerae bv. albensis VL426] Length = 1157 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 147/383 (38%), Positives = 213/383 (55%), Gaps = 23/383 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI +L DM Q M R++ GDVG GKT VA+ A A + G Q ++ Sbjct: 603 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 662 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ +++ L+ +A G+ I++GTH L Sbjct: 663 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLS 722 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 723 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 782 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502 I PA R IKT + R E + VL E G + Y++ Q+E +K ++ Sbjct: 783 IATPPARRLAIKTFV----RQSENSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEK 838 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 +V + I + HG+M + + E VM+ F + LL+ TT+IE GIDV A+ Sbjct: 839 LVPE---------ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 889 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617 II++ A+ GLAQLHQLRGRVGR + LL PP ++K++ RL + + ED G Sbjct: 890 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAG 949 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F +A DL+ R GE+LG +QSG Sbjct: 950 FTLATHDLEIRGAGELLGEEQSG 972 >gi|259047960|ref|ZP_05738361.1| transcription-repair coupling factor [Granulicatella adiacens ATCC 49175] gi|259035380|gb|EEW36635.1| transcription-repair coupling factor [Granulicatella adiacens ATCC 49175] Length = 1180 Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 149/432 (34%), Positives = 246/432 (56%), Gaps = 25/432 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ A E +A ++ L ++ +K G + + Q+ + P++ T+ Q Sbjct: 570 EWAKTKRKVAAKIEDIADELIELYAKRDAEK--GYAFSRDTVEQQEFEQAFPYTETQDQL 627 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 ++ +I +DM + M R+L GDVG GKT VA+ A+ AV G QA ++ P ILA+QHY Sbjct: 628 RSVAEIKEDMQKDKPMDRLLVGDVGYGKTEVAMRAVFKAVMDGKQAAVLVPTTILAEQHY 687 Query: 339 E-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 E F+++++ + + +++ + + + ++++ G I+IGTH L +Q+ L L Sbjct: 688 ENFVQRFS-DYPFKIGLLSRFRSKKEQEETIKKLRKGSVDIVIGTHRLLSKDVQFLDLGL 746 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +IVDE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I PA R P Sbjct: 747 LIVDEEQRFGVKHKERLKQLKSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYP 806 Query: 458 IKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEH 513 ++T ++ N I + IER ++ G + +++ ++E EKK R +V Sbjct: 807 VQTFVMEQNPMTIRDGIER---EMARGGQVFYLYNRVETIEKKADELRVLVP-------- 855 Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 + +IHG+MS+ E+++ F G +L+ TT+IE G+D+ + + + IENA++ GL Sbjct: 856 -GCRVGVIHGQMSETTLENILFQFIEGEYDVLVTTTIIETGVDIPNVNTLFIENADYMGL 914 Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQR 628 +QL+QLRGRVGR I+ L+Y P L++ S RL +++ TE GF IA DL R Sbjct: 915 SQLYQLRGRVGRTNRIAYAYLMYQPDKVLTEVSEKRLQAMRDFTELGSGFKIAMRDLSIR 974 Query: 629 KEGEILGIKQSG 640 G +LG +Q G Sbjct: 975 GAGNLLGKQQHG 986 >gi|153820314|ref|ZP_01972981.1| transcription-repair coupling factor [Vibrio cholerae NCTC 8457] gi|126509143|gb|EAZ71737.1| transcription-repair coupling factor [Vibrio cholerae NCTC 8457] Length = 691 Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 148/381 (38%), Positives = 214/381 (56%), Gaps = 23/381 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T Q AI +L DM Q M R++ GDVG GKT VA+ A A + G Q ++ P Sbjct: 139 PFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVP 198 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQH+E + N I VE+++ +++ L+ +A G+ I++GTH L Sbjct: 199 TTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSE 258 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S I Sbjct: 259 IRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA 318 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVV 504 PA R IKT + D VI + VL E G + Y++ Q+E +K ++ +V Sbjct: 319 TPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEKLV 374 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + I + HG+M + + E VM+ F + LL+ TT+IE GIDV A+ II Sbjct: 375 PE---------ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTII 425 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFL 619 ++ A+ GLAQLHQLRGRVGR + LL PP ++K++ RL + + ED GF Sbjct: 426 MDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFT 485 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG +QSG Sbjct: 486 LATHDLEIRGAGELLGEEQSG 506 >gi|324113535|gb|EGC07510.1| transcription-repair coupling protein [Escherichia fergusonii B253] Length = 1148 Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 216/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q+ +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQNDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|323976513|gb|EGB71601.1| transcription-repair coupling protein [Escherichia coli TW10509] Length = 1148 Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 216/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q+ +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQNDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|113970068|ref|YP_733861.1| transcription-repair coupling factor [Shewanella sp. MR-4] gi|113884752|gb|ABI38804.1| transcription-repair coupling factor [Shewanella sp. MR-4] Length = 1160 Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 153/417 (36%), Positives = 231/417 (55%), Gaps = 25/417 (5%) Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 +A ++ + R+Q + IN E + AQ + PF T QESAI +L DM Sbjct: 574 VAAELLDVYARRQARPGESCDINDE-EYAQ-FAQGFPFEETVDQESAIHAVLADMQSPVA 631 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R++ GDVG GKT VA+ A AV AG Q V++ P +LAQQHYE K + +++E Sbjct: 632 MDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVVLVPTTLLAQQHYENFKDRFADWPVVIE 691 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 +++ + + L+++ G+ I+IGTH L Q ++ L L+I+DE+HRFGV+Q+ K Sbjct: 692 VMSRFRTAKEQTQVLKQLEEGKVDIVIGTHKLLQSEAKFENLGLLIIDEEHRFGVRQKEK 751 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 + +L +TATPIPRTL + G D+S I PA R +KT + R + Sbjct: 752 IKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFV----RESDPAT 807 Query: 474 RLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528 + +L E G + Y++ +E EK + +++ + + + HG+M + Sbjct: 808 VREAILREILRGGQVYYLHNNVETIEKCAQDISTLLPE---------ARVVVAHGQMRER 858 Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588 D E VM F + +L+ TT+IE GIDV A+ IIIE A+ FGLAQLHQLRGRVGR Sbjct: 859 DLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQLHQLRGRVGRSHH 918 Query: 589 ISSCILLY-HPP-LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 + L+ HP ++ ++ RL + ED GF++A +DL+ R GE+LG +QSG Sbjct: 919 QAYAYLMTPHPKRMTSDARKRLEAIDALEDLGAGFMLATQDLEIRGAGELLGDEQSG 975 >gi|323492540|ref|ZP_08097688.1| transcription-repair coupling factor [Vibrio brasiliensis LMG 20546] gi|323313327|gb|EGA66443.1| transcription-repair coupling factor [Vibrio brasiliensis LMG 20546] Length = 1153 Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 145/383 (37%), Positives = 216/383 (56%), Gaps = 23/383 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI ++ DM Q M R++ GDVG GKT VA+ A A + G Q ++ Sbjct: 599 GFPFEETDDQSMAINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ +++ L+ I G+ +++GTH L Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKTAKEQKQVLQDIEEGKVDLVVGTHKLLS 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 719 NDIKFKDLGLLIVDEEHRFGVRQKEKMKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502 I PA R IKT + R D V+ + VL E G + Y++ Q+E EK ++ Sbjct: 779 IATPPARRLAIKTFV--RQRDDAVVR--EAVLREIMRGGQVYFLHNQVETIEKVAADLEK 834 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 +V + + + HG+M + + E +M+ F + LL+ TT+IE GIDV A+ Sbjct: 835 LVPE---------ARVTVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANT 885 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---G 617 II++ A++ GLAQLHQLRGRVGR + LL HP ++K++ RL + + ED G Sbjct: 886 IIMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAG 945 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F +A DL+ R GE+LG +QSG Sbjct: 946 FTLATHDLEIRGAGELLGDEQSG 968 >gi|77411312|ref|ZP_00787661.1| reticulocyte binding protein [Streptococcus agalactiae CJB111] gi|77162648|gb|EAO73610.1| reticulocyte binding protein [Streptococcus agalactiae CJB111] Length = 1165 Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 159/459 (34%), Positives = 250/459 (54%), Gaps = 30/459 (6%) Query: 224 ARERLA--YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281 A++R+A +++ + L R Q + G + + + + + T+ Q +I Sbjct: 564 AKQRVAKQVEDIADDLLKLYAERSQLQ---GFAFSPDDNMQNDFDNDFAYVETEDQLRSI 620 Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341 K+I QDM M R+L GDVG GKT VA+ A AV Q ++ P +LAQQH+E Sbjct: 621 KEIKQDMEGNRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHFENF 680 Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401 K+ N + V++++ + + L+R++ GQ IIIGTH L + + L L+++D Sbjct: 681 KERFSNYPVTVDVLSRFRSKKEQTDTLKRLSKGQVDIIIGTHRLLSQDVVFSDLGLIVID 740 Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461 E+ RFGV+ + KL + T VL +TATPIPRTL ++ LG D+S I P R P++T Sbjct: 741 EEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTY 800 Query: 462 IIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSS 517 ++ N + E I R + G + +++ +++ ++K S + +V +S Sbjct: 801 VLETNPGLVREAIIR---EIDRGGQVFYVYNKVDTIDQKVSELQELVPE---------AS 848 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 I +HG+MS+I E+ + F NG +L+ATT+IE G+D+ + + + +ENA+H GL+ L+ Sbjct: 849 IGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFVENADHMGLSTLY 908 Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGE 632 QLRGRVGR I+ L+Y P L++ S RL +K TE GF IA DL R G Sbjct: 909 QLRGRVGRSNRIAYAYLMYRPDKVLTEISEKRLDAIKGFTELGSGFKIAMRDLSIRGAGN 968 Query: 633 ILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669 ILG QSG + E++ LLE IA K K ++ Q Sbjct: 969 ILGASQSGFIDSV--GFEMYSQLLEQAIATKQGKSLIRQ 1005 >gi|325497055|gb|EGC94914.1| transcription-repair coupling factor [Escherichia fergusonii ECD227] Length = 1148 Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 216/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q+ +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQNDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|308050222|ref|YP_003913788.1| transcription-repair coupling factor [Ferrimonas balearica DSM 9799] gi|307632412|gb|ADN76714.1| transcription-repair coupling factor [Ferrimonas balearica DSM 9799] Length = 1156 Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 156/426 (36%), Positives = 234/426 (54%), Gaps = 16/426 (3%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQE 278 W R+ +A ++ + R++ K G P++ +E Q+ PF T Q Sbjct: 554 WDKARRKAAEKVRDVAAELLDIYARREAKPGHGFPMDELE---YQRFSAAFPFEETVDQA 610 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI +L+DM++ M R++ GDVG GKT VA+ A AV G Q ++ P +LAQQHY Sbjct: 611 AAIGAVLRDMTKPQAMDRLVCGDVGFGKTEVAMRAAFVAVNGGKQVAVLVPTTLLAQQHY 670 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + + + VE+++ + ++K LE++A G+ I+IGTH L Q I + L L+ Sbjct: 671 ENFRDRFADWPVRVEVMSRFRTASEQKKVLEQLAEGKVDILIGTHKLLQSEINFPDLGLL 730 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S I P R + Sbjct: 731 IVDEEHRFGVRQKEKIKALRAEVDILTLTATPIPRTLNMAMSGMRDLSIIATAPKRRLSV 790 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518 KT + P V E L + G + Y++ +E +E + L + + Sbjct: 791 KTFVRP-QEGALVREALMREILRGGQVYYLHNSVETIQE-----CADELAKLVPE--ARV 842 Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578 I HG+M + + E VM F +G LL+ TT+IE GID+ A+ I+IE A+ FGLAQLHQ Sbjct: 843 GIAHGQMRERELEQVMSDFHHGRFNLLVCTTIIETGIDIPSANTILIERADKFGLAQLHQ 902 Query: 579 LRGRVGRGEEISSCILLY-HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634 LRGRVGR + LL L+K++ RL ++ +D GFL+A +DL+ R GE+L Sbjct: 903 LRGRVGRSHHQAYAYLLTPAKKLAKDAAKRLEAIEQLDDLGAGFLLATQDLEIRGAGELL 962 Query: 635 GIKQSG 640 G +QSG Sbjct: 963 GDEQSG 968 >gi|319940213|ref|ZP_08014566.1| transcription-repair coupling factor [Streptococcus anginosus 1_2_62CV] gi|319810684|gb|EFW07014.1| transcription-repair coupling factor [Streptococcus anginosus 1_2_62CV] Length = 1164 Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 159/440 (36%), Positives = 241/440 (54%), Gaps = 30/440 (6%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 I L R Q K G + + Q+ + P+ T+ Q +IK++ +DM + M R+ Sbjct: 580 IKLYAERSQLK---GFAFSSDDSYQQEFDNDFPYVETEDQLRSIKEVKKDMESDHPMDRL 636 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 L GDVG GKT VA+ A AV Q I+ P +LAQQHY K+ + I +E+++ Sbjct: 637 LVGDVGFGKTEVAMRAAFKAVNDHKQVAILVPTTVLAQQHYTNFKERFNDFPINIEVLSR 696 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 ++ ++ LE++ GQ IIIGTH L I + L L+++DE+ RFGV+ + KL + Sbjct: 697 FKSKSEQKTILEKLKKGQVDIIIGTHRLLSKDIVFADLGLIVIDEEQRFGVKHKEKLKEL 756 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI---DEVIER 474 T VL +TATPIPRTL ++ LG D+S I P R P++T ++ N D V+ Sbjct: 757 KTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNATVIRDAVLRE 816 Query: 475 LKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532 ++ G + Y++ +++ E+K S + ++ +SI +HG+MS+I E+ Sbjct: 817 ----MNRGGQVYYLYNKVDTMEQKVSELKELIPE---------ASIGYVHGQMSEILLEN 863 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 + F NG LL+ TT+IE G+D+ + + + IENA++ GL+ L+QLRGRVGR I+ Sbjct: 864 TLLDFINGEYDLLVTTTIIETGVDIPNVNTLFIENADYMGLSTLYQLRGRVGRSNRIAYA 923 Query: 593 ILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 L+Y P L++ S RL +K TE GF IA DL R G ILG QSG + Sbjct: 924 YLMYRPDKALTEISEKRLETIKGFTELGSGFKIAMRDLSIRGAGNILGSSQSGFIDSV-- 981 Query: 648 QPELHDSLLE--IARKDAKH 665 E++ LLE IA+K K Sbjct: 982 GFEMYSQLLEEAIAKKQGKE 1001 >gi|218548644|ref|YP_002382435.1| transcription-repair coupling factor [Escherichia fergusonii ATCC 35469] gi|218356185|emb|CAQ88802.1| transcription-repair coupling factor [Escherichia fergusonii ATCC 35469] Length = 1148 Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 216/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q+ +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQNDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|319746177|gb|EFV98447.1| transcription-repair coupling factor [Streptococcus agalactiae ATCC 13813] Length = 1165 Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 159/459 (34%), Positives = 250/459 (54%), Gaps = 30/459 (6%) Query: 224 ARERLA--YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281 A++R+A +++ + L R Q + G + + + + + T+ Q +I Sbjct: 564 AKQRVAKQVEDIADDLLKLYAERSQLQ---GFAFSPDDNMQNDFDNDFAYVETEDQLRSI 620 Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341 K+I QDM M R+L GDVG GKT VA+ A AV Q ++ P +LAQQH+E Sbjct: 621 KEIKQDMEGNRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHFENF 680 Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401 K+ N + V++++ + + L+R++ GQ IIIGTH L + + L L+++D Sbjct: 681 KERFSNYPVTVDVLSRFRSKKEQTDTLKRLSKGQVDIIIGTHRLLSQDVVFSDLGLIVID 740 Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461 E+ RFGV+ + KL + T VL +TATPIPRTL ++ LG D+S I P R P++T Sbjct: 741 EEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTY 800 Query: 462 IIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSS 517 ++ N + E I R + G + +++ +++ ++K S + +V +S Sbjct: 801 VLETNPGLVREAIIR---EIDRGGQVFYVYNKVDTIDQKVSELQELVPE---------AS 848 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 I +HG+MS+I E+ + F NG +L+ATT+IE G+D+ + + + +ENA+H GL+ L+ Sbjct: 849 IGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFVENADHMGLSTLY 908 Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGE 632 QLRGRVGR I+ L+Y P L++ S RL +K TE GF IA DL R G Sbjct: 909 QLRGRVGRSNRIAYAYLMYRPDKVLTEISEKRLDAIKGFTELGSGFKIAMRDLSIRGAGN 968 Query: 633 ILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669 ILG QSG + E++ LLE IA K K ++ Q Sbjct: 969 ILGASQSGFIDSV--GFEMYSQLLEQAIATKQGKSLIRQ 1005 >gi|330829926|ref|YP_004392878.1| transcription-repair coupling factor [Aeromonas veronii B565] gi|328805062|gb|AEB50261.1| Transcription-repair coupling factor [Aeromonas veronii B565] Length = 1157 Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 148/382 (38%), Positives = 211/382 (55%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + PF T Q +AI +L DM Q M R++ GDVG GKT VA+ A AV G Q ++ Sbjct: 606 SFPFEETDDQLNAINAVLGDMCQAKSMDRLVCGDVGFGKTEVAMRAAFVAVHGGKQVAVL 665 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY+ + N + VE+++ + ++ +A G+ IIIGTH L Sbjct: 666 VPTTLLAQQHYDNFRDRFANWPVRVEVLSRFRSAKEQSAVMKELAEGKVDIIIGTHKLLG 725 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + + L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 726 SELTFKDLGLLIVDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMAMSGMRDLSI 785 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503 I PA R IKT + + + + R V+ L G + Y++ +E EK ++ + Sbjct: 786 IATPPAKRLAIKTF---VRQHEPAVVREAVLRELKRGGQVYYLHNDVESIEKCAADLAEL 842 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 V + I I HG+M + D E +M F + LL+ TT+IE GIDV A+ I Sbjct: 843 VPE---------ARIGIAHGQMRERDLERIMSDFYHQRFNLLVCTTIIETGIDVPSANTI 893 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPPL-SKNSYTRLSVLKNTED---GF 618 I++ A+H GLAQLHQLRGRVGR + LL HP L +K++ RL + + ED GF Sbjct: 894 IMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKLMTKDAAKRLEAIASLEDLGAGF 953 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG QSG Sbjct: 954 ALATHDLEIRGAGELLGDDQSG 975 >gi|300214981|gb|ADJ79397.1| Transcription-repair coupling factor [Lactobacillus salivarius CECT 5713] Length = 908 Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 144/430 (33%), Positives = 238/430 (55%), Gaps = 19/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R E +A ++ L +++ +K G + ++ P++ T Q Sbjct: 302 EWAKTKRRVANKIEDIADELVDLYAKREAEK--GYAFTPDDSYQKEFEDAFPYTETPDQL 359 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + K+I QDM + M R+L GDVG GKT VAL A AV+ G Q +AP +LAQQHY Sbjct: 360 RSAKEIKQDMEKTKPMDRLLIGDVGYGKTEVALRAAFKAVQDGKQVAFLAPTTVLAQQHY 419 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E +++ +N + + I++ ++ +E + G+ I++GTH L +++ L L+ Sbjct: 420 ETMEQRFENFPVEIGILSRFNTAKEIKETIENLETGKLDIVVGTHRLLSKDVKFADLGLL 479 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L + T+ VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 480 IIDEEQRFGVKHKERLKELKTSVDVLTLTATPIPRTLNMSMLGVRDLSVIETAPMNRYPI 539 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516 +T +I N +++ +K + G + +++ +++ EK S S+V + Sbjct: 540 QTYVIEKN-YGVIVDGIKREIERGGQVFYLHNRVDDIEKVASELESLVPE---------A 589 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 +A IHGRM++ E+++ F +G +L+ TT+IE G+D+ + + + ++NA+ GL+QL Sbjct: 590 KVAYIHGRMTETQLENILIDFIDGEYDVLVTTTIIETGVDIPNVNTLFVDNADRMGLSQL 649 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGRVGR I+ +Y P L++ + RL +K+ TE GF IA DL R G Sbjct: 650 YQLRGRVGRSNRIAYAYFMYQPNKVLTEVAEKRLEAIKDFTELGSGFKIAMRDLSIRGAG 709 Query: 632 EILGIKQSGM 641 +LG +Q G Sbjct: 710 NLLGKQQHGF 719 >gi|261494132|ref|ZP_05990635.1| transcription repair coupling factor [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496027|ref|ZP_05992437.1| transcription repair coupling factor [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308277|gb|EEY09570.1| transcription repair coupling factor [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310298|gb|EEY11498.1| transcription repair coupling factor [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 1177 Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 150/380 (39%), Positives = 216/380 (56%), Gaps = 19/380 (5%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 P+ T Q+ AI ++ DM Q M R++ GDVG GKT VA+ A AV Q VI+A Sbjct: 629 FPYEETDDQKIAINAVISDMCQAKAMDRLVCGDVGFGKTEVAIRATFLAVMNHKQVVILA 688 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQHYE K N + VE+++ ++ L+ +A G+ I++GTH L QD Sbjct: 689 PTTLLAQQHYENFKDRFANYPVNVEVLSRFKTAKEQKTILQNVAEGKVDILVGTHKLLQD 748 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 + + L L+++DE+HRFGV+Q+ K+ Q +L +TATPIPRTL + G D+S I Sbjct: 749 DVAFRDLGLLVIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLSII 808 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505 PA R IKT + + DE++ R + +L E G + Y++ + + + E Sbjct: 809 ASPPARRLLIKTF---VRQSDEMVIR-EAILREILRGGQVYYLHNDV-----ATIENCAE 859 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L + I I HG+M + + E VM F + LL+ +T+IE GIDV A+ III Sbjct: 860 KLAELVPE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIII 917 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRL---SVLKNTEDGFLI 620 E A+ FGLAQLHQLRGRVGR + +L HP L+K++ RL S + N GF + Sbjct: 918 ERADKFGLAQLHQLRGRVGRSHHQAYAYMLTPHPKTLTKDAEQRLEAMSTIDNLGAGFAL 977 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG +QSG Sbjct: 978 ATHDLEIRGAGELLGSEQSG 997 >gi|323967055|gb|EGB62481.1| transcription-repair coupling protein [Escherichia coli M863] gi|327253513|gb|EGE65151.1| transcription-repair coupling factor [Escherichia coli STEC_7v] Length = 1148 Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 216/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q+ +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQNDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERMAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|261822040|ref|YP_003260146.1| transcription-repair coupling factor [Pectobacterium wasabiae WPP163] gi|261606053|gb|ACX88539.1| transcription-repair coupling factor [Pectobacterium wasabiae WPP163] Length = 1150 Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 147/386 (38%), Positives = 211/386 (54%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 592 QLFCESFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 651 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQH++ + N + +E+I+ + + LE G+ I+IGT Sbjct: 652 QVAVLVPTTLLAQQHFDNFRDRFANWPVKIEMISRFRSAREQTQILEETQEGKVDILIGT 711 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 712 HKLLQSDVRWRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 771 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 772 RDLSIIATPPARRLAVKTF---VREYDNLMVR-EAILRETLRGGQVYYLYNDVE-----N 822 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 +R L + I I HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 823 IEKATQRLAELVPE--ARITIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPS 880 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL PP +S ++ RL + + ED Sbjct: 881 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAMSTDAQKRLEAIASLEDL 940 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 941 GAGFALATHDLEIRGAGELLGDDQSG 966 >gi|332092875|gb|EGI97943.1| transcription-repair coupling factor [Shigella dysenteriae 155-74] Length = 1148 Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 216/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q+ M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQQLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAITSLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|224128810|ref|XP_002320427.1| predicted protein [Populus trichocarpa] gi|222861200|gb|EEE98742.1| predicted protein [Populus trichocarpa] Length = 817 Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 143/380 (37%), Positives = 226/380 (59%), Gaps = 17/380 (4%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 P+ PT Q+ A D+ +D++Q+ M R++ GDVG GKT VAL A+ V AG QA+++ Sbjct: 260 FPYEPTPDQKLAFIDVERDLNQRETPMDRLICGDVGFGKTEVALRAIFCIVSAGKQAMVL 319 Query: 328 APIGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 AP +LA+QH++ I +++++ + I V +++ +A + L I HG II+GTH+L Sbjct: 320 APTIVLAKQHFDVISERFSKYSHIKVALLSRFQSKAEKEMYLNMIEHGHLDIIVGTHSLL 379 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 + + Y L L++VDE+ RFGV+Q+ K+ T+ VL ++ATPIPRTL L G D S Sbjct: 380 GNRVVYNNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDAS 439 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 I+ P R PIKT + N+ D++I +K L G + +++ P+I+ +E V+ Sbjct: 440 LISTPPPERVPIKTHLSAYNK-DKLISAIKYELDRGGQVFYVLPRIKGLEE------VKD 492 Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 F L + F + IA+ HG+ E M+ F G K+LI T ++E G+D+ +A+ III Sbjct: 493 F--LEQSFPNVEIAVAHGQQYSKQLEDTMEQFAQGEIKILICTNIVESGLDIQNANTIII 550 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLI 620 ++ + FGLAQL+QLRGRVGR ++ + L Y L+ + RL+ L+ + GF + Sbjct: 551 QDVQLFGLAQLYQLRGRVGRADKEAHAHLFYPDKSMLTDQALERLAALEECRELGQGFQL 610 Query: 621 AEEDLKQRKEGEILGIKQSG 640 AE D+ R G I G +Q+G Sbjct: 611 AERDMGIRGFGTIFGEQQTG 630 >gi|270261435|ref|ZP_06189708.1| hypothetical protein SOD_a06670 [Serratia odorifera 4Rx13] gi|270044919|gb|EFA18010.1| hypothetical protein SOD_a06670 [Serratia odorifera 4Rx13] Length = 1159 Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 147/386 (38%), Positives = 214/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q ++ PF T QE AI +L DM Q M R++ GDVG GKT VA+ A AVE G Sbjct: 601 QLFCQSFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENGK 660 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQH++ + I +E+++ +++ ++ G+ IIIGT Sbjct: 661 QVAVLVPTTLLAQQHFDNFRDRFATWPIRIEMMSRFRSAKEQQQIMDDAVDGKVDIIIGT 720 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 721 HKLLQSDLRWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 780 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 781 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREVLRGGQVYYLYNDVE-----N 831 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 E+ L + IAI HG+M + D E VM+ F + +L+ TT+IE GID+ Sbjct: 832 IEKAAEKLAELVPE--ARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPS 889 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616 A+ IIIE A+ FGLAQLHQLRGRVGR + LL P +S +++ RL + + ED Sbjct: 890 ANTIIIERADRFGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSTDAHKRLEAIASLEDL 949 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 950 GAGFALATHDLEIRGAGELLGEDQSG 975 >gi|170682845|ref|YP_001744064.1| transcription-repair coupling factor [Escherichia coli SMS-3-5] gi|170520563|gb|ACB18741.1| transcription-repair coupling factor [Escherichia coli SMS-3-5] Length = 1148 Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 216/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q+ +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQNDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|153000915|ref|YP_001366596.1| transcription-repair coupling factor [Shewanella baltica OS185] gi|151365533|gb|ABS08533.1| transcription-repair coupling factor [Shewanella baltica OS185] Length = 1162 Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 164/461 (35%), Positives = 248/461 (53%), Gaps = 27/461 (5%) Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 +A ++ + R+Q + I+ E + AQ R PF T QESAI +L DM Sbjct: 575 VAAELLDVYARRQSRPGESCEID-EDEYAQ-FARGFPFEETVDQESAIIAVLADMQSPTA 632 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R++ GDVG GKT VA+ A AV AG Q V++ P +LAQQHYE K + ++ E Sbjct: 633 MDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVVLVPTTLLAQQHYENFKDRFADWPVVTE 692 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 +++ + + L+++ G+ I+IGTH L Q ++ L L+I+DE+HRFGV+Q+ K Sbjct: 693 VMSRFRTAKEQTQVLQQLEEGKVDIVIGTHKLLQSEAKFENLGLLIIDEEHRFGVRQKEK 752 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 + +L +TATPIPRTL + G D+S I PA R +KT + R + Sbjct: 753 IKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFV----RESDPAT 808 Query: 474 RLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530 + +L E G + Y++ + E E + +++ + + + HG+M + D Sbjct: 809 VREAILREILRGGQVYYLHNNV-ESIEKCAQGIIDLLPE------ARVVVAHGQMRERDL 861 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 E VM F + +L+ TT+IE GIDV A+ IIIE A+ FGLAQLHQLRGRVGR + Sbjct: 862 ERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQLHQLRGRVGRSHHQA 921 Query: 591 SCILLY-HPP-LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG-MPKF 644 L+ HP ++ ++ RL + ED GF++A +DL+ R GE+LG +QSG + K Sbjct: 922 YAYLMTPHPKRMTPDARKRLEAIDALEDLGAGFMLATQDLEIRGAGELLGDEQSGHISKI 981 Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685 + L+ +LE A K K ++P L + Q I L Sbjct: 982 GFS---LYMEMLEAAVKALKQ--GKEPSLAQMLNQQCEIEL 1017 >gi|152978238|ref|YP_001343867.1| transcription-repair coupling factor [Actinobacillus succinogenes 130Z] gi|150839961|gb|ABR73932.1| transcription-repair coupling factor [Actinobacillus succinogenes 130Z] Length = 1148 Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 148/409 (36%), Positives = 230/409 (56%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + + G E + Q PF T Q AI ++ DM Q M R++ Sbjct: 572 LLDVYAQREAQKGFAFQYEREEFQAFSATFPFEETFDQALAINAVISDMCQPKAMDRLIC 631 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQHYE + N + VE+++ Sbjct: 632 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFRDRFANLPVNVEVLSRFK 691 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +++ L +A G+ I+IGTH L Q ++++ L L+I+DE+HRFGV+Q+ ++ Q Sbjct: 692 TAKEQKRVLADLADGKVDILIGTHKLIQSDVKFHDLGLLIIDEEHRFGVRQKERIKQLRA 751 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I+ PA R IKT + + D++ R + +L Sbjct: 752 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLTIKTF---VRQQDDLTVR-EAIL 807 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ + ++ + E+ +L + + + HG+M + + E VM Sbjct: 808 REILRGGQVYYLHNDV-----ASIENCAEKLTALVPE--ARVTVGHGQMRERELERVMTD 860 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ +T+IE GIDV A+ IIIE A++FGLAQLHQLRGRVGR + LL Sbjct: 861 FYHQRFNVLVCSTIIETGIDVPTANTIIIERADNFGLAQLHQLRGRVGRSHHQAYAYLLT 920 Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 PP ++K++ RL L++ ++ GF++A DL+ R GE+LG +QSG Sbjct: 921 PPPKLMTKDALKRLEALESLDNLGAGFVLATHDLEIRGAGELLGSEQSG 969 >gi|217973128|ref|YP_002357879.1| transcription-repair coupling factor [Shewanella baltica OS223] gi|217498263|gb|ACK46456.1| transcription-repair coupling factor [Shewanella baltica OS223] Length = 1162 Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 157/428 (36%), Positives = 233/428 (54%), Gaps = 25/428 (5%) Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 R PF T QESAI +L DM M R++ GDVG GKT VA+ A AV AG Q V+ Sbjct: 606 RGFPFEETVDQESAIIAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVV 665 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 + P +LAQQHYE K + ++ E+++ + + L+++ G+ I+IGTH L Sbjct: 666 LVPTTLLAQQHYENFKDRFADWPVVTEVMSRFRTAKEQTQVLQQLEEGKVDIVIGTHKLL 725 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 Q ++ L L+I+DE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 726 QSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLS 785 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSV 503 I PA R +KT + R + + +L E G + Y++ + E E + + Sbjct: 786 IIATPPAKRLAVKTFV----RESDPATVREAILREILRGGQVYYLHNNV-ESIEKCAQGI 840 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 ++ + + + HG+M + D E VM F + +L+ TT+IE GIDV A+ I Sbjct: 841 IDLLPE------ARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTI 894 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED---GF 618 IIE A+ FGLAQLHQLRGRVGR + L+ HP ++ ++ RL + ED GF Sbjct: 895 IIERADTFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTPDARKRLEAIDALEDLGAGF 954 Query: 619 LIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677 ++A +DL+ R GE+LG +QSG + K + L+ +LE A K K ++P L + Sbjct: 955 MLATQDLEIRGAGELLGDEQSGHISKIGFS---LYMEMLEAAVKALKQ--GKEPSLAQML 1009 Query: 678 GQSIRILL 685 Q I L Sbjct: 1010 NQQCEIEL 1017 >gi|238795991|ref|ZP_04639503.1| Transcription-repair-coupling factor [Yersinia mollaretii ATCC 43969] gi|238720196|gb|EEQ12000.1| Transcription-repair-coupling factor [Yersinia mollaretii ATCC 43969] Length = 1148 Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 151/409 (36%), Positives = 222/409 (54%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G ++ + Q ++ PF T QE AI +L DM Q M R++ Sbjct: 568 LLDIYAQRAAKSGFKFKLDREQYQLFCQSFPFETTPDQEQAINAVLSDMCQPLAMDRLVC 627 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQH++ + + +E+++ Sbjct: 628 GDVGFGKTEVAMRAAFLAVANNKQVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMMSRFR 687 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 ++ LE+ A G+ IIIGTH L Q +++ L L+IVDE+HRFGV+ + ++ Sbjct: 688 SAKEQQVILEQAAEGKVDIIIGTHKLLQSDLRWQDLGLLIVDEEHRFGVRHKERIKAMRA 747 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I PA R +KT + D ++ R + +L Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDSLVIR-EAIL 803 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ +E N +R L + IAI HG+M + D E VM+ Sbjct: 804 REILRGGQVYYLYNDVE-----NIEKATQRLAELVPE--ARIAIGHGQMRERDLERVMND 856 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ TT+IE GID+ A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 916 Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 P ++ ++ RL + + ED GF +A DL+ R GE+LG QSG Sbjct: 917 PNPKAMTTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 965 >gi|126174619|ref|YP_001050768.1| transcription-repair coupling factor [Shewanella baltica OS155] gi|125997824|gb|ABN61899.1| transcription-repair coupling factor [Shewanella baltica OS155] Length = 1162 Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 157/428 (36%), Positives = 233/428 (54%), Gaps = 25/428 (5%) Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 R PF T QESAI +L DM M R++ GDVG GKT VA+ A AV AG Q V+ Sbjct: 606 RGFPFEETVDQESAIIAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVV 665 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 + P +LAQQHYE K + ++ E+++ + + L+++ G+ I+IGTH L Sbjct: 666 LVPTTLLAQQHYENFKDRFADWPVVTEVMSRFRTAKEQTQVLQQLEEGKVDIVIGTHKLL 725 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 Q ++ L L+I+DE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 726 QSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLS 785 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSV 503 I PA R +KT + R + + +L E G + Y++ + E E + + Sbjct: 786 IIATPPAKRLAVKTFV----RESDPATVREAILREILRGGQVYYLHNNV-ESIEKCAQGI 840 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 ++ + + + HG+M + D E VM F + +L+ TT+IE GIDV A+ I Sbjct: 841 IDLLPE------ARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTI 894 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED---GF 618 IIE A+ FGLAQLHQLRGRVGR + L+ HP ++ ++ RL + ED GF Sbjct: 895 IIERADTFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTPDARKRLEAIDALEDLGAGF 954 Query: 619 LIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677 ++A +DL+ R GE+LG +QSG + K + L+ +LE A K K ++P L + Sbjct: 955 MLATQDLEIRGAGELLGDEQSGHISKIGFS---LYMEMLEAAVKALKQ--GKEPSLAQML 1009 Query: 678 GQSIRILL 685 Q I L Sbjct: 1010 NQQCEIEL 1017 >gi|238789093|ref|ZP_04632882.1| Transcription-repair-coupling factor [Yersinia frederiksenii ATCC 33641] gi|238722857|gb|EEQ14508.1| Transcription-repair-coupling factor [Yersinia frederiksenii ATCC 33641] Length = 1099 Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 148/397 (37%), Positives = 217/397 (54%), Gaps = 19/397 (4%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G ++ + Q ++ PF T QE AI +L DM Q M R++ GDVG GKT VA+ Sbjct: 580 GFKFKLDREQYQLFCQSFPFETTPDQEQAINAVLNDMCQPLAMDRLVCGDVGFGKTEVAM 639 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A AV Q ++ P +LAQQH++ + + +E+++ ++ LE+ Sbjct: 640 RAAFLAVANNKQVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMMSRFRSAKEQQVILEQA 699 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 A G+ IIIGTH L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPI Sbjct: 700 AEGKVDIIIGTHKLLQSDLRWQDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPI 759 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWI 488 PRTL + G D+S I PA R +KT + D ++ R + +L E G + Y++ Sbjct: 760 PRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYL 815 Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548 +E N +R L + IAI HG+M + D E VM+ F + +L+ T Sbjct: 816 YNDVE-----NIEKATQRLAELVPE--ARIAIGHGQMRERDLERVMNDFHHQRFNVLVCT 868 Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYT 606 T+IE GID+ A+ IIIE A+HFGLAQLHQLRGRVGR + LL P ++ ++ Sbjct: 869 TIIETGIDIPSANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMTTDAKK 928 Query: 607 RLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 RL + + ED GF +A DL+ R GE+LG QSG Sbjct: 929 RLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 965 >gi|301029579|ref|ZP_07192657.1| transcription-repair coupling factor [Escherichia coli MS 196-1] gi|299877574|gb|EFI85785.1| transcription-repair coupling factor [Escherichia coli MS 196-1] Length = 1148 Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 152/409 (37%), Positives = 223/409 (54%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + + Q + PF T Q AI +L DM Q M R++ Sbjct: 568 LLDIYAQRAAKEGFAFKYDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 627 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV+ Q ++ P +LAQQHY+ + N + +E+I+ Sbjct: 628 GDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFR 687 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + L +A G+ I+IGTH L Q +++ L L+IVDE+HRFGV+ + ++ Sbjct: 688 SAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRA 747 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I PA R +KT + D ++ R + +L Sbjct: 748 NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDSMVVR-EAIL 803 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ +E N + ER L + IAI HG+M + + E VM+ Sbjct: 804 REILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIAIGHGQMRERELERVMND 856 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ TT+IE GID+ A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 916 Query: 597 -HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 HP ++ ++ RL + + ED GF +A DL+ R GE+LG +QSG Sbjct: 917 PHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG 965 >gi|160875623|ref|YP_001554939.1| transcription-repair coupling factor [Shewanella baltica OS195] gi|160861145|gb|ABX49679.1| transcription-repair coupling factor [Shewanella baltica OS195] gi|315267811|gb|ADT94664.1| transcription-repair coupling factor [Shewanella baltica OS678] Length = 1165 Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 157/428 (36%), Positives = 233/428 (54%), Gaps = 25/428 (5%) Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 R PF T QESAI +L DM M R++ GDVG GKT VA+ A AV AG Q V+ Sbjct: 606 RGFPFEETVDQESAIIAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVV 665 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 + P +LAQQHYE K + ++ E+++ + + L+++ G+ I+IGTH L Sbjct: 666 LVPTTLLAQQHYENFKDRFADWPVVTEVMSRFRTAKEQTQVLQQLEEGKVDIVIGTHKLL 725 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 Q ++ L L+I+DE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 726 QSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLS 785 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSV 503 I PA R +KT + R + + +L E G + Y++ + E E + + Sbjct: 786 IIATPPAKRLAVKTFV----RESDPATVREAILREILRGGQVYYLHNNV-ESIEKCAQGI 840 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 ++ + + + HG+M + D E VM F + +L+ TT+IE GIDV A+ I Sbjct: 841 IDLLPE------ARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTI 894 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED---GF 618 IIE A+ FGLAQLHQLRGRVGR + L+ HP ++ ++ RL + ED GF Sbjct: 895 IIERADTFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTPDARKRLEAIDALEDLGAGF 954 Query: 619 LIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677 ++A +DL+ R GE+LG +QSG + K + L+ +LE A K K ++P L + Sbjct: 955 MLATQDLEIRGAGELLGDEQSGHISKIGFS---LYMEMLEAAVKALKQ--GKEPSLAQML 1009 Query: 678 GQSIRILL 685 Q I L Sbjct: 1010 NQQCEIEL 1017 >gi|261210529|ref|ZP_05924822.1| transcription-repair coupling factor [Vibrio sp. RC341] gi|260840314|gb|EEX66885.1| transcription-repair coupling factor [Vibrio sp. RC341] Length = 1155 Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 148/383 (38%), Positives = 213/383 (55%), Gaps = 23/383 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI +L DM Q M R++ GDVG GKT VA+ A A + G Q ++ Sbjct: 601 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 660 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ ++ L+ +A G+ I++GTH L Sbjct: 661 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKLILQDVADGKVDILVGTHKLLS 720 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 721 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 780 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502 I PA R IKT + D VI + VL E G + Y++ Q+E +K ++ Sbjct: 781 IATPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEK 836 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 +V + I + HG+M + + E VM+ F + LL+ TT+IE GIDV A+ Sbjct: 837 LVPE---------ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 887 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617 II++ A+ GLAQLHQLRGRVGR + LL PP ++K++ RL + + ED G Sbjct: 888 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAG 947 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F +A DL+ R GE+LG +QSG Sbjct: 948 FTLATHDLEIRGAGELLGEEQSG 970 >gi|90962332|ref|YP_536248.1| transcription-repair coupling factor [Lactobacillus salivarius UCC118] gi|90821526|gb|ABE00165.1| Transcription-repair coupling factor [Lactobacillus salivarius UCC118] Length = 1174 Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 144/429 (33%), Positives = 238/429 (55%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R E +A ++ L +++ +K G + ++ P++ T Q Sbjct: 568 EWAKTKRRVANKIEDIADELVDLYAKREAEK--GYAFTPDDSYQKEFEDAFPYTETPDQL 625 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + K+I QDM + M R+L GDVG GKT VAL A AV+ G Q +AP +LAQQHY Sbjct: 626 RSAKEIKQDMEKTKPMDRLLIGDVGYGKTEVALRAAFKAVQDGKQVAFLAPTTVLAQQHY 685 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E +++ +N + + I++ ++ +E + G+ I++GTH L +++ L L+ Sbjct: 686 ETMEQRFENFPVEIGILSRFNTAKEIKETIENLETGKLDIVVGTHRLLSKDVKFADLGLL 745 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L + T+ VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 746 IIDEEQRFGVKHKERLKELKTSVDVLTLTATPIPRTLNMSMLGVRDLSVIETAPMNRYPI 805 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516 +T +I N +++ +K + G + +++ +++ EK S S+V + Sbjct: 806 QTYVIEKN-YGVIVDGIKREIERGGQVFYLHNRVDDIEKVASELESLVPE---------A 855 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 +A IHGRM++ E+++ F +G +L+ TT+IE G+D+ + + + ++NA+ GL+QL Sbjct: 856 KVAYIHGRMTETQLENILIDFIDGEYDVLVTTTIIETGVDIPNVNTLFVDNADRMGLSQL 915 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGRVGR I+ +Y P L++ + RL +K+ TE GF IA DL R G Sbjct: 916 YQLRGRVGRSNRIAYAYFMYQPNKVLTEVAEKRLEAIKDFTELGSGFKIAMRDLSIRGAG 975 Query: 632 EILGIKQSG 640 +LG +Q G Sbjct: 976 NLLGKQQHG 984 >gi|300922643|ref|ZP_07138740.1| transcription-repair coupling factor [Escherichia coli MS 182-1] gi|300420992|gb|EFK04303.1| transcription-repair coupling factor [Escherichia coli MS 182-1] Length = 1164 Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 147/386 (38%), Positives = 216/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRG-EEISSCILLYHP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + + +L HP ++ ++ RL + + ED Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTTHPKAMTTDAQKRLEAIASLEDL 955 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981 >gi|315287490|gb|EFU46901.1| transcription-repair coupling factor [Escherichia coli MS 110-3] Length = 1164 Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981 >gi|219850580|ref|YP_002465013.1| transcription-repair coupling factor [Chloroflexus aggregans DSM 9485] gi|219544839|gb|ACL26577.1| transcription-repair coupling factor [Chloroflexus aggregans DSM 9485] Length = 1182 Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 154/429 (35%), Positives = 238/429 (55%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W R+ A + LA ++ L ++Q K G + + + +++ + P+ T Q Sbjct: 562 DWERTKRKVRAAVQELAEELLHLYAQRQLKP--GFAFSPDNEWQRELEASFPYLETDDQL 619 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 AI ++ DM + M R++ GDVG GKT VAL A AV+ G Q I+ P +LAQQH+ Sbjct: 620 RAIAEVKADMERPIPMDRLVCGDVGFGKTEVALRAAFKAVQDGKQVAILVPTTVLAQQHF 679 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + +K + VE+++ + + +A G+ IIIGTH L + + + L LV Sbjct: 680 DTFRKRMAAFPVTVEMLSRFRSPKEQDGIVRDLARGKIDIIIGTHRLLSNDVVFRDLGLV 739 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + +L Q VL +TATPIPRTL + G D+S I P R PI Sbjct: 740 IVDEEQRFGVRHKERLKQLRAEVDVLTLTATPIPRTLHMALSGIRDLSVINTPPEDRLPI 799 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 KT ++P + I EVI R L + Y++ +++ + V ER L + Sbjct: 800 KTYVVPADDHLIQEVIRR---ELEREGQVYFVHNRVQ-----SIYHVAERLRRLVPE--A 849 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 IA+ HG++++ + E VM F G +L+ TT+IE G+DV +A+ III++A H+GLAQL Sbjct: 850 RIAVGHGQLAERNLERVMMDFFEGRYDVLVCTTIIESGLDVPNANTIIIDDATHYGLAQL 909 Query: 577 HQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 +QLRGRVGRG + LLY+P P++ ++ RL ++ + GF +A DL+ R G Sbjct: 910 YQLRGRVGRGATRAYAYLLYNPAAPMTSDARQRLEAIQEATELGAGFRVAMRDLEIRGAG 969 Query: 632 EILGIKQSG 640 +LG +QSG Sbjct: 970 NLLGSEQSG 978 >gi|91210269|ref|YP_540255.1| transcription-repair coupling factor [Escherichia coli UTI89] gi|237706900|ref|ZP_04537381.1| transcription-repair coupling factor [Escherichia sp. 3_2_53FAA] gi|91071843|gb|ABE06724.1| transcription-repair coupling factor; mutation frequency decline [Escherichia coli UTI89] gi|226898110|gb|EEH84369.1| transcription-repair coupling factor [Escherichia sp. 3_2_53FAA] Length = 1169 Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 612 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 671 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 672 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 731 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 732 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 791 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 792 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 842 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 843 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 900 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 901 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 960 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 961 GAGFALATHDLEIRGAGELLGEEQSG 986 >gi|90109237|pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair Coupling Factor gi|90109238|pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair Coupling Factor Length = 1151 Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 594 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 653 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 654 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 713 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 714 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 773 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 774 RDLSIIATPPARRLAVKTF---VREYDSMVVR-EAILREILRGGQVYYLYNDVE-----N 824 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 825 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 882 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 883 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 942 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 943 GAGFALATHDLEIRGAGELLGEEQSG 968 >gi|315618286|gb|EFU98876.1| transcription-repair coupling factor [Escherichia coli 3431] Length = 1148 Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSMVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|332279698|ref|ZP_08392111.1| transcription-repair coupling factor [Shigella sp. D9] gi|332102050|gb|EGJ05396.1| transcription-repair coupling factor [Shigella sp. D9] Length = 1169 Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 612 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 671 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 672 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 731 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 732 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 791 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 792 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 842 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 843 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 900 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 901 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 960 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 961 GAGFALATHDLEIRGAGELLGEEQSG 986 >gi|328950754|ref|YP_004368089.1| transcription-repair coupling factor [Marinithermus hydrothermalis DSM 14884] gi|328451078|gb|AEB11979.1| transcription-repair coupling factor [Marinithermus hydrothermalis DSM 14884] Length = 985 Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 137/382 (35%), Positives = 217/382 (56%), Gaps = 17/382 (4%) Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324 I +N P++ T Q+ A+++ L+D+ M R++ GDVG GKT VAL A V G Q Sbjct: 444 IEKNFPYTLTPDQKRALEETLKDLETPRPMDRLISGDVGFGKTEVALRAAHRVVGHGKQV 503 Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384 + P +LAQQHYE ++ + + +++ R+ LE + G I+IGTH Sbjct: 504 AFLVPTTLLAQQHYETFCARFRDLPVSIGMLSRFTSAREERRVLEGLKRGAVDIVIGTHR 563 Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444 L + + L L+I+DE+HRFGV Q+ +L + VL ++ATPIPRTL +G D Sbjct: 564 LLSADVAFRDLGLLIIDEEHRFGVAQKERLKELREGVDVLTLSATPIPRTLYQALVGLKD 623 Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRS 502 +S I P GRKPI+T++ P D + R V+ + G KA+++ ++ S Sbjct: 624 VSSIQTPPPGRKPIRTILAP---FDPALVREAVMFEIERGGKAFYVHDRVA--------S 672 Query: 503 VVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 + +R L + I ++HG+M + + E VM F+ G LL+ATT++E G+D+ +A+ Sbjct: 673 IAQRAKYLEALIPEARIGVVHGQMPEDEIEEVMFLFQEGAFDLLVATTIVESGLDIPEAN 732 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 I+IE A+ GLA L+QLRGRVGR E+ + L + P L++ + RL+ + + D G Sbjct: 733 TILIERADKLGLANLYQLRGRVGRREKEAYAYLFHPPKLTEAAERRLAAIADLSDLGSGH 792 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 L+AE+D++ R G +LG +Q G Sbjct: 793 LLAEKDMEIRGVGNLLGPEQHG 814 >gi|117920732|ref|YP_869924.1| transcription-repair coupling factor [Shewanella sp. ANA-3] gi|117613064|gb|ABK48518.1| transcription-repair coupling factor [Shewanella sp. ANA-3] Length = 1160 Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 153/417 (36%), Positives = 230/417 (55%), Gaps = 25/417 (5%) Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 +A ++ + R+Q + IN E + AQ + PF T QESAI +L DM Sbjct: 574 VAAELLDVYARRQARPGESCDINDE-EYAQ-FAQGFPFEETVDQESAIHAVLADMQSPVA 631 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R++ GDVG GKT VA+ A AV AG Q V++ P +LAQQHYE K + +++E Sbjct: 632 MDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVVLVPTTLLAQQHYENFKDRFADWPVVIE 691 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 +++ + + L+ + G+ I+IGTH L Q ++ L L+I+DE+HRFGV+Q+ K Sbjct: 692 VMSRFRTAKEQTQVLKLLEEGKVDIVIGTHKLLQSEAKFENLGLLIIDEEHRFGVRQKEK 751 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 + +L +TATPIPRTL + G D+S I PA R +KT + R + Sbjct: 752 IKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFV----RESDPAT 807 Query: 474 RLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528 + +L E G + Y++ +E EK + +++ + + + HG+M + Sbjct: 808 VREAILREILRGGQVYYLHNNVETIEKCAQDISTLLPE---------ARVVVAHGQMRER 858 Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588 D E VM F + +L+ TT+IE GIDV A+ IIIE A+ FGLAQLHQLRGRVGR Sbjct: 859 DLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQLHQLRGRVGRSHH 918 Query: 589 ISSCILLY-HPP-LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 + L+ HP ++ ++ RL + ED GF++A +DL+ R GE+LG +QSG Sbjct: 919 QAYAYLMTPHPKRMTSDARKRLEAIDALEDLGAGFMLATQDLEIRGAGELLGDEQSG 975 >gi|281600530|gb|ADA73514.1| Transcription-repair coupling factor [Shigella flexneri 2002017] Length = 1169 Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 612 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 671 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 672 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 731 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 732 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 791 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 792 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 842 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 843 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 900 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 901 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 960 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 961 GAGFALATHDLEIRGAGELLGEEQSG 986 >gi|306832490|ref|ZP_07465642.1| transcription-repair coupling factor [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425390|gb|EFM28510.1| transcription-repair coupling factor [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 1170 Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 165/469 (35%), Positives = 254/469 (54%), Gaps = 33/469 (7%) Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266 N +++ R K + S E +A D+LL L R Q K G + + + ++ Sbjct: 559 NKLNDGRFQKTKQKVSKQVEDIA-DDLLK----LYAERSQLK---GFAFSPDDDLQREFD 610 Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 + F T+ Q +IK+I DM + M R+L GDVG GKT VA+ A AV+ Q + Sbjct: 611 EDFAFVETEDQLRSIKEIKHDMEEDKPMDRLLVGDVGFGKTEVAMRAAFKAVKDHKQVAV 670 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 + P +LAQQHY + +N + V++++ + + L+++ GQ IIIGTH L Sbjct: 671 LVPTTVLAQQHYTNFSERFENYPVTVDVLSRFRSKKEQNDTLDKLKKGQVDIIIGTHRLL 730 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 + + L L+I+DE+ RFGV+ + KL + T VL +TATPIPRTL ++ LG D+S Sbjct: 731 SKDVDFADLGLIIIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLS 790 Query: 447 KITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRS 502 I P R P++T ++ N I E I R + G + +++ +++ ++K S + Sbjct: 791 VIETPPTNRYPVQTYVLETNPGLIREAIIR---EIDRGGQVFYVYNRVDTIDQKVSELQE 847 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 +V +SI +HG+MS+I E+ + F +G +L+ATT+IE G+D+ + + Sbjct: 848 LVPE---------ASIGFVHGQMSEIQLENTLMDFIDGVYDVLVATTIIETGVDISNVNT 898 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DG 617 + IENA+H GL+ L+QLRGRVGR I+ L+Y P L++ S RL +K TE G Sbjct: 899 LFIENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLDAIKGFTELGSG 958 Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAK 664 F IA DL R G ILG QSG + E++ LLE IA+K K Sbjct: 959 FKIAMRDLSIRGAGNILGASQSGFIDSV--GFEMYSQLLEEAIAKKQGK 1005 >gi|300917885|ref|ZP_07134518.1| transcription-repair coupling factor [Escherichia coli MS 115-1] gi|300414875|gb|EFJ98185.1| transcription-repair coupling factor [Escherichia coli MS 115-1] Length = 1164 Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981 >gi|331682620|ref|ZP_08383239.1| transcription-repair coupling factor [Escherichia coli H299] gi|331080251|gb|EGI51430.1| transcription-repair coupling factor [Escherichia coli H299] Length = 1148 Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|315135746|dbj|BAJ42905.1| transcription-repair coupling factor [Escherichia coli DH1] Length = 1169 Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 612 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 671 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 672 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 731 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 732 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 791 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 792 RDLSIIATPPARRLAVKTF---VREYDSMVVR-EAILREILRGGQVYYLYNDVE-----N 842 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 843 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 900 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 901 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 960 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 961 GAGFALATHDLEIRGAGELLGEEQSG 986 >gi|119472828|ref|ZP_01614752.1| transcription-repair ATP-dependent coupling factor [Alteromonadales bacterium TW-7] gi|119444723|gb|EAW26029.1| transcription-repair ATP-dependent coupling factor [Alteromonadales bacterium TW-7] Length = 1157 Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 152/410 (37%), Positives = 223/410 (54%), Gaps = 21/410 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + + G ++G+ ++ + PF T Q +AI+ +L DM K M R++ Sbjct: 577 LLDIYAQRQAKPGNKFTLDGQAYRQFSESFPFEETDDQRNAIEAVLGDMQSKQAMDRLVC 636 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV G Q I+ P +LAQQHYE K + I V +++ Sbjct: 637 GDVGFGKTEVAMRAAFVAVNDGKQVAILVPTTLLAQQHYENFKDRFADFPIEVGVLSRFN 696 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 ++ LE +A+G+ I+IGTH L Q I++ L L+IVDE+HRFGV+Q+ K+ Sbjct: 697 STKEQKDTLENMANGKLDIVIGTHKLIQQDIKFNDLGLLIVDEEHRFGVRQKEKIKALRA 756 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI--IPINRIDEVIERLKV 477 +L +TATPIPRTL + G D+S I PA R +KT + + I E I R Sbjct: 757 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVRQRDVELIREAILR--- 813 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII--HGRMSDIDKESVMD 535 + G + Y++ +E +ER + +I HG+M + + E +M Sbjct: 814 EIKRGGQVYFLHNNVE---------TIERVAQELSEWVPEANVITAHGQMREQELEQIMT 864 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F + +++ TT+IE GIDV A+ II++ A+ GLAQLHQLRGRVGR + LL Sbjct: 865 QFYHQKYNVIVCTTIIETGIDVPTANTIIMDRADKLGLAQLHQLRGRVGRSHHQAYAYLL 924 Query: 596 YHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 P LSK++ RL +++ ED GF +A DL+ R GE+LG QSG Sbjct: 925 TGDPKALSKDASKRLQAIESLEDLGAGFALATHDLEIRGAGELLGDDQSG 974 >gi|331652166|ref|ZP_08353185.1| transcription-repair coupling factor [Escherichia coli M718] gi|331050444|gb|EGI22502.1| transcription-repair coupling factor [Escherichia coli M718] Length = 1164 Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981 >gi|227886529|ref|ZP_04004334.1| transcription-repair coupling factor TRCF [Escherichia coli 83972] gi|301051097|ref|ZP_07197931.1| transcription-repair coupling factor [Escherichia coli MS 185-1] gi|227836733|gb|EEJ47199.1| transcription-repair coupling factor TRCF [Escherichia coli 83972] gi|300297269|gb|EFJ53654.1| transcription-repair coupling factor [Escherichia coli MS 185-1] gi|307553115|gb|ADN45890.1| transcription-repair coupling factor [Escherichia coli ABU 83972] gi|315291014|gb|EFU50379.1| transcription-repair coupling factor [Escherichia coli MS 153-1] Length = 1164 Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981 >gi|300928331|ref|ZP_07143866.1| transcription-repair coupling factor [Escherichia coli MS 187-1] gi|300463663|gb|EFK27156.1| transcription-repair coupling factor [Escherichia coli MS 187-1] Length = 1164 Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981 >gi|331646372|ref|ZP_08347475.1| transcription-repair coupling factor [Escherichia coli M605] gi|331045124|gb|EGI17251.1| transcription-repair coupling factor [Escherichia coli M605] Length = 1164 Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981 >gi|300974586|ref|ZP_07172647.1| transcription-repair coupling factor [Escherichia coli MS 45-1] gi|300410528|gb|EFJ94066.1| transcription-repair coupling factor [Escherichia coli MS 45-1] Length = 1164 Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981 >gi|281178224|dbj|BAI54554.1| transcription-repair coupling factor [Escherichia coli SE15] Length = 1148 Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFMAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|110641290|ref|YP_669020.1| transcription-repair coupling factor [Escherichia coli 536] gi|300982404|ref|ZP_07176102.1| transcription-repair coupling factor [Escherichia coli MS 200-1] gi|110342882|gb|ABG69119.1| transcription-repair coupling factor [Escherichia coli 536] gi|300307241|gb|EFJ61761.1| transcription-repair coupling factor [Escherichia coli MS 200-1] gi|324013204|gb|EGB82423.1| transcription-repair coupling factor [Escherichia coli MS 60-1] Length = 1164 Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981 >gi|191173073|ref|ZP_03034606.1| transcription-repair coupling factor [Escherichia coli F11] gi|190906618|gb|EDV66224.1| transcription-repair coupling factor [Escherichia coli F11] Length = 1148 Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|333004926|gb|EGK24446.1| transcription-repair coupling factor [Shigella flexneri VA-6] Length = 1148 Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLNDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|320197559|gb|EFW72172.1| Transcription-repair coupling factor [Escherichia coli WV_060327] Length = 1148 Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|315296619|gb|EFU55914.1| transcription-repair coupling factor [Escherichia coli MS 16-3] Length = 1164 Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981 >gi|306814036|ref|ZP_07448209.1| transcription-repair coupling factor [Escherichia coli NC101] gi|305852673|gb|EFM53121.1| transcription-repair coupling factor [Escherichia coli NC101] Length = 1148 Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|218700384|ref|YP_002408013.1| transcription-repair coupling factor [Escherichia coli IAI39] gi|293409480|ref|ZP_06653056.1| transcription-repair coupling factor [Escherichia coli B354] gi|218370370|emb|CAR18173.1| transcription-repair coupling factor [Escherichia coli IAI39] gi|291469948|gb|EFF12432.1| transcription-repair coupling factor [Escherichia coli B354] Length = 1148 Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|304408993|ref|ZP_07390614.1| transcription-repair coupling factor [Shewanella baltica OS183] gi|307302996|ref|ZP_07582751.1| transcription-repair coupling factor [Shewanella baltica BA175] gi|304352814|gb|EFM17211.1| transcription-repair coupling factor [Shewanella baltica OS183] gi|306913356|gb|EFN43778.1| transcription-repair coupling factor [Shewanella baltica BA175] Length = 1165 Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 157/428 (36%), Positives = 233/428 (54%), Gaps = 25/428 (5%) Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 R PF T QESAI +L DM M R++ GDVG GKT VA+ A AV AG Q V+ Sbjct: 606 RGFPFEETVDQESAIIAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVV 665 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 + P +LAQQHYE K + ++ E+++ + + L+++ G+ I+IGTH L Sbjct: 666 LVPTTLLAQQHYENFKDRFADWPVVTEVMSRFRTAKEQTQVLQQLEEGKVDIVIGTHKLL 725 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 Q ++ L L+I+DE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 726 QSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLS 785 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSV 503 I PA R +KT + R + + +L E G + Y++ + E E + + Sbjct: 786 IIATPPAKRLAVKTFV----RESDPATVREAILREILRGGQVYYLHNNV-ESIEKCAQGI 840 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 ++ + + + HG+M + D E VM F + +L+ TT+IE GIDV A+ I Sbjct: 841 IDLLPE------ARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTI 894 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED---GF 618 IIE A+ FGLAQLHQLRGRVGR + L+ HP ++ ++ RL + ED GF Sbjct: 895 IIERADTFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTPDARKRLEAIDALEDLGAGF 954 Query: 619 LIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677 ++A +DL+ R GE+LG +QSG + K + L+ +LE A K K ++P L + Sbjct: 955 MLATQDLEIRGAGELLGDEQSGHISKIGFS---LYMEMLEAAVKALKQ--GKEPSLAQML 1009 Query: 678 GQSIRILL 685 Q I L Sbjct: 1010 NQQCEIEL 1017 >gi|253773863|ref|YP_003036694.1| transcription-repair coupling factor [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253324907|gb|ACT29509.1| transcription-repair coupling factor [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] Length = 1164 Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981 >gi|254161220|ref|YP_003044328.1| transcription-repair coupling factor [Escherichia coli B str. REL606] gi|242376916|emb|CAQ31635.1| transcription-repair coupling factor [Escherichia coli BL21(DE3)] gi|253973121|gb|ACT38792.1| transcription-repair coupling factor [Escherichia coli B str. REL606] gi|253977335|gb|ACT43005.1| transcription-repair coupling factor [Escherichia coli BL21(DE3)] Length = 1148 Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|300816816|ref|ZP_07097036.1| transcription-repair coupling factor [Escherichia coli MS 107-1] gi|300902508|ref|ZP_07120488.1| transcription-repair coupling factor [Escherichia coli MS 84-1] gi|301305647|ref|ZP_07211736.1| transcription-repair coupling factor [Escherichia coli MS 124-1] gi|309796542|ref|ZP_07690949.1| transcription-repair coupling factor [Escherichia coli MS 145-7] gi|300405409|gb|EFJ88947.1| transcription-repair coupling factor [Escherichia coli MS 84-1] gi|300530590|gb|EFK51652.1| transcription-repair coupling factor [Escherichia coli MS 107-1] gi|300839075|gb|EFK66835.1| transcription-repair coupling factor [Escherichia coli MS 124-1] gi|308119854|gb|EFO57116.1| transcription-repair coupling factor [Escherichia coli MS 145-7] gi|315253014|gb|EFU32982.1| transcription-repair coupling factor [Escherichia coli MS 85-1] Length = 1164 Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981 >gi|218557995|ref|YP_002390908.1| transcription-repair coupling factor [Escherichia coli S88] gi|218364764|emb|CAR02454.1| transcription-repair coupling factor [Escherichia coli S88] gi|294491241|gb|ADE89997.1| transcription-repair coupling factor [Escherichia coli IHE3034] gi|307627415|gb|ADN71719.1| transcription-repair coupling factor [Escherichia coli UM146] gi|323957940|gb|EGB53652.1| transcription-repair coupling protein [Escherichia coli H263] Length = 1148 Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|293414407|ref|ZP_06657056.1| transcription-repair coupling factor [Escherichia coli B185] gi|291434465|gb|EFF07438.1| transcription-repair coupling factor [Escherichia coli B185] Length = 1148 Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|300938685|ref|ZP_07153409.1| transcription-repair coupling factor [Escherichia coli MS 21-1] gi|300456330|gb|EFK19823.1| transcription-repair coupling factor [Escherichia coli MS 21-1] Length = 1164 Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981 >gi|70729336|ref|YP_259073.1| transcription-repair coupling factor [Pseudomonas fluorescens Pf-5] gi|68343635|gb|AAY91241.1| transcription-repair coupling factor [Pseudomonas fluorescens Pf-5] Length = 1149 Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 147/380 (38%), Positives = 212/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q+S I+ + +DM M R++ GDVG GKT VA+ A AV G Q I+ Sbjct: 598 GFPFEETPDQQSTIEAVREDMLSGKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAIL 657 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A+ +A G+ I+IGTH L Q Sbjct: 658 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSTKEVNAAVADLAEGKIDIVIGTHKLLQ 717 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D ++ L LVI+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 718 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 777 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R ++T ++ N+ V E L L G + Y++ ++ EK ++ +V Sbjct: 778 IATPPARRLSVRTFVMEQNK-STVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 836 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + I I HG+M + + E VM F + +LIA+T+IE GIDV A+ III Sbjct: 837 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 887 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL P ++ ++ RL + NT+D GF++ Sbjct: 888 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVL 947 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 948 ATNDLEIRGAGELLGDGQSG 967 >gi|288904230|ref|YP_003429451.1| transcription repair coupling factor [Streptococcus gallolyticus UCN34] gi|325977207|ref|YP_004286923.1| transcription-repair coupling factor [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288730955|emb|CBI12499.1| Transcription repair coupling factor [Streptococcus gallolyticus UCN34] gi|325177135|emb|CBZ47179.1| transcription-repair coupling factor [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 1166 Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 165/469 (35%), Positives = 254/469 (54%), Gaps = 33/469 (7%) Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266 N +++ R K + S E +A D+LL L R Q K G + + + ++ Sbjct: 555 NKLNDGRFQKTKQKVSKQVEDIA-DDLLK----LYAERSQLK---GFAFSPDDDLQREFD 606 Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 + F T+ Q +IK+I DM + M R+L GDVG GKT VA+ A AV+ Q + Sbjct: 607 EDFAFVETEDQLRSIKEIKHDMEEDKPMDRLLVGDVGFGKTEVAMRAAFKAVKDHKQVAV 666 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 + P +LAQQHY + +N + V++++ + + L+++ GQ IIIGTH L Sbjct: 667 LVPTTVLAQQHYTNFSERFENYPVTVDVLSRFRSKKEQNDTLDKLKKGQVDIIIGTHRLL 726 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 + + L L+I+DE+ RFGV+ + KL + T VL +TATPIPRTL ++ LG D+S Sbjct: 727 SKDVDFADLGLIIIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLS 786 Query: 447 KITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRS 502 I P R P++T ++ N I E I R + G + +++ +++ ++K S + Sbjct: 787 VIETPPTNRYPVQTYVLETNPGLIREAIIR---EIDRGGQVFYVYNRVDTIDQKVSELQE 843 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 +V +SI +HG+MS+I E+ + F +G +L+ATT+IE G+D+ + + Sbjct: 844 LVPE---------ASIGFVHGQMSEIQLENTLMDFIDGVYDVLVATTIIETGVDISNVNT 894 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DG 617 + IENA+H GL+ L+QLRGRVGR I+ L+Y P L++ S RL +K TE G Sbjct: 895 LFIENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLDAIKGFTELGSG 954 Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAK 664 F IA DL R G ILG QSG + E++ LLE IA+K K Sbjct: 955 FKIAMRDLSIRGAGNILGASQSGFIDSV--GFEMYSQLLEEAIAKKQGK 1001 >gi|256018630|ref|ZP_05432495.1| transcription-repair coupling factor [Shigella sp. D9] Length = 1148 Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|331672629|ref|ZP_08373418.1| transcription-repair coupling factor [Escherichia coli TA280] gi|331070272|gb|EGI41638.1| transcription-repair coupling factor [Escherichia coli TA280] Length = 1164 Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981 >gi|323953199|gb|EGB49065.1| transcription-repair coupling protein [Escherichia coli H252] Length = 1148 Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 147/381 (38%), Positives = 214/381 (56%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Q ++ Sbjct: 596 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVL 655 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGTH L Q Sbjct: 656 VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ 715 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G D+S Sbjct: 716 SDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSI 775 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVV 504 I PA R +KT + D ++ R + +L E G + Y++ +E N + Sbjct: 776 IATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----NIQKAA 826 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ A+ II Sbjct: 827 ERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 884 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GFL 619 IE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED GF Sbjct: 885 IERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFA 944 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG +QSG Sbjct: 945 LATHDLEIRGAGELLGEEQSG 965 >gi|218689066|ref|YP_002397278.1| transcription-repair coupling factor [Escherichia coli ED1a] gi|218426630|emb|CAR07458.1| transcription-repair coupling factor [Escherichia coli ED1a] Length = 1148 Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|215486325|ref|YP_002328756.1| transcription-repair coupling factor [Escherichia coli O127:H6 str. E2348/69] gi|312968807|ref|ZP_07783014.1| transcription-repair coupling factor [Escherichia coli 2362-75] gi|215264397|emb|CAS08754.1| transcription-repair coupling factor [Escherichia coli O127:H6 str. E2348/69] gi|312286209|gb|EFR14122.1| transcription-repair coupling factor [Escherichia coli 2362-75] gi|323190466|gb|EFZ75740.1| transcription-repair coupling factor [Escherichia coli RN587/1] Length = 1148 Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|331662525|ref|ZP_08363448.1| transcription-repair coupling factor [Escherichia coli TA143] gi|331060947|gb|EGI32911.1| transcription-repair coupling factor [Escherichia coli TA143] Length = 1148 Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|284920939|emb|CBG34002.1| transcription-repair coupling factor [Escherichia coli 042] Length = 1164 Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981 >gi|24373808|ref|NP_717851.1| transcription-repair coupling factor [Shewanella oneidensis MR-1] gi|24348203|gb|AAN55295.1|AE015667_5 transcription-repair coupling factor [Shewanella oneidensis MR-1] Length = 1164 Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 152/417 (36%), Positives = 230/417 (55%), Gaps = 25/417 (5%) Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 +A ++ + R+Q + IN E + AQ + PF T QESAI +L DM Sbjct: 574 VAAELLDVYARRQARPGESCEINDE-EYAQ-FAQGFPFEETVDQESAIHAVLADMQSPTA 631 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R++ GDVG GKT VA+ A AV G Q V++ P +LAQQHYE K + +++E Sbjct: 632 MDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVVVLVPTTLLAQQHYENFKDRFADWPVVIE 691 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 +++ + + L+++ G+ I+IGTH L Q ++ L L+I+DE+HRFGV+Q+ K Sbjct: 692 VMSRFRTAKEQTQVLKQLEEGKVDIVIGTHKLLQSEAKFENLGLLIIDEEHRFGVRQKEK 751 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 + +L +TATPIPRTL + G D+S I PA R +KT + R + Sbjct: 752 IKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFV----RESDPAT 807 Query: 474 RLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528 + +L E G + Y++ +E EK + +++ + + + HG+M + Sbjct: 808 VREAILREILRGGQVYYLHNNVETIEKCAQDISTLLPE---------ARVVVAHGQMRER 858 Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588 D E VM F + +L+ TT+IE GIDV A+ IIIE A+ FGLAQLHQLRGRVGR Sbjct: 859 DLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQLHQLRGRVGRSHH 918 Query: 589 ISSCILLY-HPP-LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 + L+ HP ++ ++ RL + ED GF++A +DL+ R GE+LG +QSG Sbjct: 919 QAYAYLMTPHPKRMTTDARKRLEAIDALEDLGAGFMLATQDLEIRGAGELLGDEQSG 975 >gi|157160641|ref|YP_001457959.1| transcription-repair coupling factor [Escherichia coli HS] gi|312971250|ref|ZP_07785428.1| transcription-repair coupling factor [Escherichia coli 1827-70] gi|157066321|gb|ABV05576.1| transcription-repair coupling factor [Escherichia coli HS] gi|310336452|gb|EFQ01638.1| transcription-repair coupling factor [Escherichia coli 1827-70] Length = 1148 Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|332089282|gb|EGI94388.1| transcription-repair coupling factor [Shigella boydii 5216-82] Length = 1148 Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|117623299|ref|YP_852212.1| transcription-repair coupling factor [Escherichia coli APEC O1] gi|115512423|gb|ABJ00498.1| transcription-repair coupling factor; mutation frequency decline [Escherichia coli APEC O1] Length = 1164 Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 147/381 (38%), Positives = 214/381 (56%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Q ++ Sbjct: 612 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVL 671 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGTH L Q Sbjct: 672 VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ 731 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G D+S Sbjct: 732 SDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSI 791 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVV 504 I PA R +KT + D ++ R + +L E G + Y++ +E N + Sbjct: 792 IATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----NIQKAA 842 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ A+ II Sbjct: 843 ERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 900 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GFL 619 IE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED GF Sbjct: 901 IERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFA 960 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG +QSG Sbjct: 961 LATHDLEIRGAGELLGEEQSG 981 >gi|301328512|ref|ZP_07221578.1| transcription-repair coupling factor [Escherichia coli MS 78-1] gi|307310109|ref|ZP_07589759.1| transcription-repair coupling factor [Escherichia coli W] gi|300845119|gb|EFK72879.1| transcription-repair coupling factor [Escherichia coli MS 78-1] gi|306909827|gb|EFN40321.1| transcription-repair coupling factor [Escherichia coli W] gi|315060391|gb|ADT74718.1| transcription-repair coupling factor [Escherichia coli W] gi|323379049|gb|ADX51317.1| transcription-repair coupling factor [Escherichia coli KO11] gi|324017516|gb|EGB86735.1| transcription-repair coupling factor [Escherichia coli MS 117-3] Length = 1164 Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981 >gi|323962713|gb|EGB58291.1| transcription-repair coupling protein [Escherichia coli H489] gi|323973296|gb|EGB68485.1| transcription-repair coupling protein [Escherichia coli TA007] gi|332342663|gb|AEE55997.1| transcription-repair coupling factor protein [Escherichia coli UMNK88] Length = 1148 Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|320179184|gb|EFW54142.1| Transcription-repair coupling factor [Shigella boydii ATCC 9905] Length = 1148 Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|300948704|ref|ZP_07162781.1| transcription-repair coupling factor [Escherichia coli MS 116-1] gi|300956220|ref|ZP_07168532.1| transcription-repair coupling factor [Escherichia coli MS 175-1] gi|301644530|ref|ZP_07244523.1| transcription-repair coupling factor [Escherichia coli MS 146-1] gi|331641657|ref|ZP_08342792.1| transcription-repair coupling factor [Escherichia coli H736] gi|260449747|gb|ACX40169.1| transcription-repair coupling factor [Escherichia coli DH1] gi|300316948|gb|EFJ66732.1| transcription-repair coupling factor [Escherichia coli MS 175-1] gi|300451798|gb|EFK15418.1| transcription-repair coupling factor [Escherichia coli MS 116-1] gi|301077112|gb|EFK91918.1| transcription-repair coupling factor [Escherichia coli MS 146-1] gi|331038455|gb|EGI10675.1| transcription-repair coupling factor [Escherichia coli H736] Length = 1164 Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSMVVR-EAILREILRGGQVYYLYNDVE-----N 837 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981 >gi|222032867|emb|CAP75606.1| Transcription-repair-coupling factor [Escherichia coli LF82] gi|312945676|gb|ADR26503.1| transcription-repair coupling factor [Escherichia coli O83:H1 str. NRG 857C] Length = 1148 Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|194439730|ref|ZP_03071799.1| transcription-repair coupling factor [Escherichia coli 101-1] gi|194421349|gb|EDX37367.1| transcription-repair coupling factor [Escherichia coli 101-1] Length = 1148 Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDTQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|157158427|ref|YP_001462347.1| transcription-repair coupling factor [Escherichia coli E24377A] gi|193070928|ref|ZP_03051859.1| transcription-repair coupling factor [Escherichia coli E110019] gi|157080457|gb|ABV20165.1| transcription-repair coupling factor [Escherichia coli E24377A] gi|192955782|gb|EDV86254.1| transcription-repair coupling factor [Escherichia coli E110019] gi|324117315|gb|EGC11222.1| transcription-repair coupling protein [Escherichia coli E1167] Length = 1148 Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|187730283|ref|YP_001880716.1| transcription-repair coupling factor [Shigella boydii CDC 3083-94] gi|187427275|gb|ACD06549.1| transcription-repair coupling factor [Shigella boydii CDC 3083-94] Length = 1148 Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|296082243|emb|CBI21248.3| unnamed protein product [Vitis vinifera] Length = 640 Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 143/378 (37%), Positives = 217/378 (57%), Gaps = 17/378 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 + PT Q+ A D+ +D++++ M R++ GDVG GKT VAL A+ V AG QA+++AP Sbjct: 85 YEPTPDQKQAFIDVEEDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 144 Query: 330 IGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 +LA+QH++ I +++++ I V +++ A + K L I HG II+GTH+L + Sbjct: 145 TIVLAKQHFDVITERFSKYPNIKVGLLSRFQTTAEKEKHLRMIKHGDLDIIVGTHSLLGN 204 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 + Y L L++VDE+ RFGV+Q+ K+ T+ VL ++ATPIPRTL L G D S I Sbjct: 205 RVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLI 264 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 + P R PI T + N+ +++I +K L G + +++ P+I + + E Sbjct: 265 STPPPERVPIITHLSAYNK-EKIISAIKFELGRGGQIFYVLPRI--------KGLEEVME 315 Query: 509 SLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 L F IAI HG+ E MD F G K+LI T ++E G+D+ +A+ III+ Sbjct: 316 FLECSFPDVEIAIAHGKQYSKQLEETMDRFAQGEIKILICTNIVESGLDIQNANTIIIQE 375 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAE 622 + FGLAQL+QLRGRVGR ++ + L Y LS + RLS L+ D GF +AE Sbjct: 376 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRDLGQGFQLAE 435 Query: 623 EDLKQRKEGEILGIKQSG 640 D+ R G I G +Q+G Sbjct: 436 RDMGIRGFGNIFGEQQTG 453 >gi|330910930|gb|EGH39440.1| transcription-repair coupling factor [Escherichia coli AA86] Length = 1148 Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|258621368|ref|ZP_05716402.1| transcription-repair coupling factor [Vibrio mimicus VM573] gi|258586756|gb|EEW11471.1| transcription-repair coupling factor [Vibrio mimicus VM573] Length = 1156 Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 147/383 (38%), Positives = 213/383 (55%), Gaps = 23/383 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI +L DM Q M R++ GDVG GKT VA+ A A + G Q ++ Sbjct: 601 TFPFEETDDQAMAINAVLSDMCQPKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 660 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ ++ L+ +A G+ I++GTH L Sbjct: 661 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKLILQDVADGKVDILVGTHKLLS 720 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 721 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 780 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502 I PA R IKT + D VI + VL E G + Y++ Q+E +K ++ Sbjct: 781 IATPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEK 836 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 +V + + + HG+M + + E VM+ F + LL+ TT+IE GIDV A+ Sbjct: 837 LVPE---------ARVTVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 887 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617 II++ A+ GLAQLHQLRGRVGR + LL PP ++K++ RL + + ED G Sbjct: 888 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAG 947 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F +A DL+ R GE+LG +QSG Sbjct: 948 FTLATHDLEIRGAGELLGEEQSG 970 >gi|194433692|ref|ZP_03065968.1| transcription-repair coupling factor [Shigella dysenteriae 1012] gi|194418121|gb|EDX34214.1| transcription-repair coupling factor [Shigella dysenteriae 1012] Length = 1148 Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQHLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAITSLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|299362|gb|AAB26029.1| Mfd protein, transcription repair coupling factor, TRCF=mfd product [Escherichia coli, Peptide, 1148 aa] Length = 1148 Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSMVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|16129077|ref|NP_415632.1| transcription-repair coupling factor [Escherichia coli str. K-12 substr. MG1655] gi|89107960|ref|AP_001740.1| transcription-repair coupling factor [Escherichia coli str. K-12 substr. W3110] gi|170080765|ref|YP_001730085.1| transcription-repair coupling factor [Escherichia coli str. K-12 substr. DH10B] gi|238900368|ref|YP_002926164.1| transcription-repair coupling factor [Escherichia coli BW2952] gi|256023188|ref|ZP_05437053.1| transcription-repair coupling factor [Escherichia sp. 4_1_40B] gi|307137749|ref|ZP_07497105.1| transcription-repair coupling factor [Escherichia coli H736] gi|2507063|sp|P30958|MFD_ECOLI RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|1651547|dbj|BAA35929.1| transcription-repair coupling factor [Escherichia coli str. K12 substr. W3110] gi|1787357|gb|AAC74198.1| transcription-repair coupling factor [Escherichia coli str. K-12 substr. MG1655] gi|169888600|gb|ACB02307.1| transcription-repair coupling factor [Escherichia coli str. K-12 substr. DH10B] gi|238863683|gb|ACR65681.1| transcription-repair coupling factor [Escherichia coli BW2952] gi|309701385|emb|CBJ00686.1| transcription-repair coupling factor [Escherichia coli ETEC H10407] gi|323937854|gb|EGB34118.1| transcription-repair coupling protein [Escherichia coli E1520] gi|323942583|gb|EGB38750.1| transcription-repair coupling protein [Escherichia coli E482] Length = 1148 Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSMVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|301023324|ref|ZP_07187117.1| transcription-repair coupling factor [Escherichia coli MS 69-1] gi|300397049|gb|EFJ80587.1| transcription-repair coupling factor [Escherichia coli MS 69-1] Length = 1164 Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981 >gi|167855057|ref|ZP_02477830.1| transcription-repair coupling factor [Haemophilus parasuis 29755] gi|167853795|gb|EDS25036.1| transcription-repair coupling factor [Haemophilus parasuis 29755] Length = 1149 Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 159/425 (37%), Positives = 237/425 (55%), Gaps = 23/425 (5%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 PF T+ Q++AI ++ DM M R++ GDVG GKT VA+ A AV Q I+A Sbjct: 603 FPFEETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVMNHKQVAILA 662 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQH+E K N I VE+++ +++ L ++A G+ I++GTH L Q+ Sbjct: 663 PTTLLAQQHFENFKDRFANYPINVEVLSRFKTAKAQKEILAKVADGKVDILVGTHKLLQE 722 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 +Q+ L L+++DE+HRFGV+Q+ ++ Q +L +TATPIPRTL + G D+S I Sbjct: 723 DVQFKDLGLLVIDEEHRFGVRQKERIKQLRANIDILTLTATPIPRTLNMALNGMRDLSII 782 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505 PA R IKT + + D VI+ + +L E G + Y++ + + + + Sbjct: 783 ASPPARRLSIKTFVRQSD--DTVIK--EAILREILRGGQVYYLHNDV-----ATIENTAQ 833 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L + I I HG+M + + E VM F + LL+ +T+IE GIDV A+ III Sbjct: 834 QLAELVPE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIII 891 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL---SVLKNTEDGFLI 620 E A+ FGLAQLHQLRGRVGR + +L PP L+K++ RL S + N GF++ Sbjct: 892 ERADKFGLAQLHQLRGRVGRSHHQAYAYMLTPPPKTLTKDAQQRLEAMSTIDNLGAGFVL 951 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQS 680 A DL+ R GE+LG +QSG + L L+ LLE A K + ++P L + Q Sbjct: 952 ATHDLEIRGAGELLGSEQSGQIESLGF--SLYMELLENAVKALQE--GREPTLDEITQQQ 1007 Query: 681 IRILL 685 + I L Sbjct: 1008 VDIEL 1012 >gi|170020491|ref|YP_001725445.1| transcription-repair coupling factor [Escherichia coli ATCC 8739] gi|169755419|gb|ACA78118.1| transcription-repair coupling factor [Escherichia coli ATCC 8739] Length = 1164 Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981 >gi|74311675|ref|YP_310094.1| transcription-repair coupling factor [Shigella sonnei Ss046] gi|73855152|gb|AAZ87859.1| transcription-repair coupling factor [Shigella sonnei Ss046] gi|323165624|gb|EFZ51411.1| transcription-repair coupling factor [Shigella sonnei 53G] Length = 1148 Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|324005970|gb|EGB75189.1| transcription-repair coupling factor [Escherichia coli MS 57-2] Length = 1164 Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981 >gi|323185763|gb|EFZ71124.1| transcription-repair coupling factor [Escherichia coli 1357] Length = 1148 Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|300821105|ref|ZP_07101254.1| transcription-repair coupling factor [Escherichia coli MS 119-7] gi|331676906|ref|ZP_08377602.1| transcription-repair coupling factor [Escherichia coli H591] gi|300526404|gb|EFK47473.1| transcription-repair coupling factor [Escherichia coli MS 119-7] gi|331075595|gb|EGI46893.1| transcription-repair coupling factor [Escherichia coli H591] Length = 1164 Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981 >gi|260867476|ref|YP_003233878.1| transcription-repair coupling factor Mfd [Escherichia coli O111:H- str. 11128] gi|257763832|dbj|BAI35327.1| transcription-repair coupling factor Mfd [Escherichia coli O111:H- str. 11128] Length = 1148 Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|227111702|ref|ZP_03825358.1| transcription-repair coupling factor [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 1149 Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 147/386 (38%), Positives = 211/386 (54%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 591 QLFCESFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQH++ + N + +E+I+ + + LE G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHFDNFRDRFANWPVKIEMISRFRSAREQTQVLEETQEGKVDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVRWRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDNLVVR-EAILRETLRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 +R L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IEKATQRLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPS 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL P +S ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGDDQSG 965 >gi|82544418|ref|YP_408365.1| transcription-repair coupling factor [Shigella boydii Sb227] gi|81245829|gb|ABB66537.1| transcription-repair coupling factor [Shigella boydii Sb227] gi|320175622|gb|EFW50714.1| Transcription-repair coupling factor [Shigella dysenteriae CDC 74-1112] gi|320184241|gb|EFW59055.1| Transcription-repair coupling factor [Shigella flexneri CDC 796-83] gi|332094450|gb|EGI99499.1| transcription-repair coupling factor [Shigella boydii 3594-74] Length = 1148 Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|30062647|ref|NP_836818.1| transcription-repair coupling factor [Shigella flexneri 2a str. 2457T] gi|30040893|gb|AAP16624.1| transcription-repair coupling factor [Shigella flexneri 2a str. 2457T] gi|313650430|gb|EFS14837.1| transcription-repair coupling factor [Shigella flexneri 2a str. 2457T] gi|332758277|gb|EGJ88600.1| transcription-repair coupling factor [Shigella flexneri 4343-70] gi|332759433|gb|EGJ89741.1| transcription-repair coupling factor [Shigella flexneri 2747-71] gi|332761054|gb|EGJ91341.1| transcription-repair coupling factor [Shigella flexneri K-671] gi|332767336|gb|EGJ97530.1| transcription-repair coupling factor [Shigella flexneri 2930-71] gi|333005518|gb|EGK25036.1| transcription-repair coupling factor [Shigella flexneri K-218] gi|333019350|gb|EGK38633.1| transcription-repair coupling factor [Shigella flexneri K-304] Length = 1148 Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|332706023|ref|ZP_08426096.1| transcription-repair coupling factor mfd [Lyngbya majuscula 3L] gi|332355283|gb|EGJ34750.1| transcription-repair coupling factor mfd [Lyngbya majuscula 3L] Length = 1295 Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 142/410 (34%), Positives = 230/410 (56%), Gaps = 17/410 (4%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 + LL + Q ++ G + Q++ + P+ PT Q AI+D+ +D+ M R+ Sbjct: 703 VDLLKLYAQRAQQSGYCFPADSPWQQELEDSFPYQPTPDQLKAIQDVKRDLESDRPMDRL 762 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 + GDVG GKT VA+ A+ AV + Q +AP IL QQHY IK+ I V ++ Sbjct: 763 VCGDVGFGKTEVAIRAIFKAVTSNKQVAFLAPTTILTQQHYHTIKERFSPYPINVGLLNR 822 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 +R L+R+ G+ +++GTH L S+ + +L L+++DE+ RFGV Q+ K+ Sbjct: 823 FRSPQEKRDILQRLKTGELDVVVGTHQLLGKSVTFRELGLLVIDEEQRFGVNQKEKIKSF 882 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 T VL ++ATPIPRTL ++ G ++S IT P R+PIKT + P + + V +++ Sbjct: 883 KTQVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPIKTHLSPY-KPEAVRTAIRM 941 Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 L G + +++ P++E E+ + R ++ + IAI HG++ + ES+M Sbjct: 942 ELDRGGQVFYVVPRVEGIEEVAAELREMI---------LEARIAIAHGQLDPAELESIML 992 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +F NG +L+ TT+IE G+D+ + I+IE+A FGLAQL+QLRGRVGR + LL Sbjct: 993 TFSNGEADILVCTTIIESGLDIPRVNTIVIEDAHKFGLAQLYQLRGRVGRAGIQAHAWLL 1052 Query: 596 Y--HPPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSG 640 Y LS+ + RL ++ G+L+A D++ R G +LG++QSG Sbjct: 1053 YPNQKVLSEAAKKRLRAIQEFTQLGSGYLLATRDMEIRGVGNLLGVEQSG 1102 >gi|191168584|ref|ZP_03030368.1| transcription-repair coupling factor [Escherichia coli B7A] gi|209918370|ref|YP_002292454.1| transcription-repair coupling factor [Escherichia coli SE11] gi|218553691|ref|YP_002386604.1| transcription-repair coupling factor [Escherichia coli IAI1] gi|218694647|ref|YP_002402314.1| transcription-repair coupling factor [Escherichia coli 55989] gi|260854597|ref|YP_003228488.1| transcription-repair coupling factor Mfd [Escherichia coli O26:H11 str. 11368] gi|190901378|gb|EDV61143.1| transcription-repair coupling factor [Escherichia coli B7A] gi|209911629|dbj|BAG76703.1| transcription-repair coupling factor [Escherichia coli SE11] gi|218351379|emb|CAU97085.1| transcription-repair coupling factor [Escherichia coli 55989] gi|218360459|emb|CAQ98013.1| transcription-repair coupling factor [Escherichia coli IAI1] gi|257753246|dbj|BAI24748.1| transcription-repair coupling factor Mfd [Escherichia coli O26:H11 str. 11368] gi|323156751|gb|EFZ42887.1| transcription-repair coupling factor [Escherichia coli EPECa14] gi|323175269|gb|EFZ60882.1| transcription-repair coupling factor [Escherichia coli LT-68] gi|323947582|gb|EGB43586.1| transcription-repair coupling protein [Escherichia coli H120] Length = 1148 Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|193066296|ref|ZP_03047347.1| transcription-repair coupling factor [Escherichia coli E22] gi|194429791|ref|ZP_03062305.1| transcription-repair coupling factor [Escherichia coli B171] gi|260843354|ref|YP_003221132.1| transcription-repair coupling factor Mfd [Escherichia coli O103:H2 str. 12009] gi|192926068|gb|EDV80711.1| transcription-repair coupling factor [Escherichia coli E22] gi|194412138|gb|EDX28446.1| transcription-repair coupling factor [Escherichia coli B171] gi|257758501|dbj|BAI29998.1| transcription-repair coupling factor Mfd [Escherichia coli O103:H2 str. 12009] gi|323163658|gb|EFZ49480.1| transcription-repair coupling factor [Escherichia coli E128010] Length = 1148 Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|253688855|ref|YP_003018045.1| transcription-repair coupling factor [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755433|gb|ACT13509.1| transcription-repair coupling factor [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 1150 Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 147/386 (38%), Positives = 211/386 (54%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 592 QLFCESFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 651 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQH++ + N + +E+I+ + + LE G+ I+IGT Sbjct: 652 QVAVLVPTTLLAQQHFDNFRDRFANWPVKIEMISRFRSAREQTQVLEETQEGKVDILIGT 711 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 712 HKLLQSDVRWRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 771 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 772 RDLSIIATPPARRLAVKTF---VREYDNLVVR-EAILREILRGGQVYYLYNDVE-----N 822 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 +R L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 823 IEKATQRLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPS 880 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL P +S ++ RL + + ED Sbjct: 881 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSTDAQKRLEAIASLEDL 940 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 941 GAGFALATHDLEIRGAGELLGDDQSG 966 >gi|240950267|ref|ZP_04754546.1| transcription-repair coupling factor [Actinobacillus minor NM305] gi|240295244|gb|EER46045.1| transcription-repair coupling factor [Actinobacillus minor NM305] Length = 1150 Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 157/426 (36%), Positives = 238/426 (55%), Gaps = 23/426 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T+ Q++AI ++ DM M R++ GDVG GKT VA+ A AV Q I+ Sbjct: 602 TFPFEETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVMNHKQVAIL 661 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 AP +LAQQH+E K N I VE+++ +++ L ++A G+ I++GTH L Q Sbjct: 662 APTTLLAQQHFENFKDRFANYPINVEVLSRFKTAKEQKEILAKVADGKVDILVGTHKLLQ 721 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + +Q+ L L+++DE+HRFGV+Q+ ++ Q +L +TATPIPRTL + G D+S Sbjct: 722 EDVQFKDLGLLVIDEEHRFGVRQKERIKQLRANIDILTLTATPIPRTLNMALNGMRDLSI 781 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVV 504 I PA R IKT + + D VI+ + +L E G + Y++ + + + Sbjct: 782 IASPPARRLSIKTFVRQSD--DTVIK--EAILREILRGGQVYYLHNDV-----ATIENTA 832 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 ++ L + I I HG+M + + E VM F + LL+ +T+IE GIDV A+ II Sbjct: 833 QQLAELVPE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTII 890 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFL 619 IE A+ FGLAQLHQLRGRVGR + +L PP L+K++ RL + + ++ GF+ Sbjct: 891 IERADKFGLAQLHQLRGRVGRSHHQAYAYMLTPPPKTLTKDAQQRLEAMSSIDNLGAGFV 950 Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679 +A DL+ R GE+LG +QSG + L L+ LLE A K + ++P L + Q Sbjct: 951 LATHDLEIRGAGELLGSEQSGQIESLGF--SLYMELLENAVKALQE--GREPTLDEITQQ 1006 Query: 680 SIRILL 685 + I L Sbjct: 1007 QVDIEL 1012 >gi|56479827|ref|NP_707029.2| transcription-repair coupling factor [Shigella flexneri 2a str. 301] gi|56383378|gb|AAN42736.2| transcription-repair coupling factor [Shigella flexneri 2a str. 301] Length = 1148 Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|323175654|gb|EFZ61248.1| transcription-repair coupling factor [Escherichia coli 1180] Length = 1148 Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|262404233|ref|ZP_06080788.1| transcription-repair coupling factor [Vibrio sp. RC586] gi|262349265|gb|EEY98403.1| transcription-repair coupling factor [Vibrio sp. RC586] Length = 1155 Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 147/383 (38%), Positives = 213/383 (55%), Gaps = 23/383 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI +L DM Q M R++ GDVG GKT VA+ A A + G Q ++ Sbjct: 601 TFPFEETDDQAMAINAVLSDMCQPKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 660 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ ++ L+ +A G+ I++GTH L Sbjct: 661 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKLILQDVADGKVDILVGTHKLLS 720 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 721 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 780 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502 I PA R IKT + D VI + VL E G + Y++ Q+E +K ++ Sbjct: 781 IATPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEK 836 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 +V + + + HG+M + + E VM+ F + LL+ TT+IE GIDV A+ Sbjct: 837 LVPE---------ARVTVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 887 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617 II++ A+ GLAQLHQLRGRVGR + LL PP ++K++ RL + + ED G Sbjct: 888 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAG 947 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F +A DL+ R GE+LG +QSG Sbjct: 948 FTLATHDLEIRGAGELLGEEQSG 970 >gi|293433403|ref|ZP_06661831.1| transcription-repair coupling factor [Escherichia coli B088] gi|331667514|ref|ZP_08368378.1| transcription-repair coupling factor [Escherichia coli TA271] gi|291324222|gb|EFE63644.1| transcription-repair coupling factor [Escherichia coli B088] gi|320201009|gb|EFW75593.1| Transcription-repair coupling factor [Escherichia coli EC4100B] gi|331065099|gb|EGI36994.1| transcription-repair coupling factor [Escherichia coli TA271] Length = 1148 Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|77460087|ref|YP_349594.1| transcription-repair coupling factor [Pseudomonas fluorescens Pf0-1] gi|77384090|gb|ABA75603.1| transcription-repair coupling factor [Pseudomonas fluorescens Pf0-1] Length = 1149 Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 147/380 (38%), Positives = 211/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q+S I+ + +DM M R++ GDVG GKT VA+ A AV G Q I+ Sbjct: 598 GFPFEETPDQQSTIEAVREDMLSPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAIL 657 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A+ ++A G I+IGTH L Q Sbjct: 658 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVAQLAEGNIDIVIGTHKLLQ 717 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D ++ L LVI+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 718 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 777 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R ++T ++ N+ V E L L G + Y++ ++ EK + +V Sbjct: 778 IATPPARRLSVRTFVMEQNK-STVKEALLRELLRGGQVYYLHNDVKTIEKCAAELAELVP 836 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + I I HG+M + + E VM F + +LIA+T+IE GIDV A+ III Sbjct: 837 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 887 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL P ++ ++ RL + NT+D GF++ Sbjct: 888 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRQQITGDAEKRLEAIANTQDLGAGFVL 947 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 948 ATNDLEIRGAGELLGDGQSG 967 >gi|257464856|ref|ZP_05629227.1| transcription-repair coupling factor [Actinobacillus minor 202] gi|257450516|gb|EEV24559.1| transcription-repair coupling factor [Actinobacillus minor 202] Length = 1151 Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 157/425 (36%), Positives = 238/425 (56%), Gaps = 23/425 (5%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 PF T+ Q++AI ++ DM M R++ GDVG GKT VA+ A AV Q I+A Sbjct: 603 FPFEETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVMNHKQVAILA 662 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQH+E K N I VE+++ +++ L ++A G+ I++GTH L Q+ Sbjct: 663 PTTLLAQQHFENFKDRFANYPINVEVLSRFKTAKEQKEILAKVADGKVDILVGTHKLLQE 722 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 +Q+ L L+++DE+HRFGV+Q+ ++ Q +L +TATPIPRTL + G D+S I Sbjct: 723 DVQFKDLGLLVIDEEHRFGVRQKERIKQLRANIDILTLTATPIPRTLNMALNGMRDLSII 782 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505 PA R IKT + + D VI+ + +L E G + Y++ + + + + Sbjct: 783 ASPPARRLSIKTFVRQSD--DTVIK--EAILREILRGGQVYYLHNDV-----ATIENTAQ 833 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L + I I HG+M + + E VM F + LL+ +T+IE GIDV A+ III Sbjct: 834 QLAELVPE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIII 891 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + +L PP L+K++ RL + + ++ GF++ Sbjct: 892 ERADKFGLAQLHQLRGRVGRSHHQAYAYMLTPPPKMLTKDAQQRLEAMSSIDNLGAGFVL 951 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQS 680 A DL+ R GE+LG +QSG + L L+ LLE A K + ++P L + Q Sbjct: 952 ATHDLEIRGAGELLGSEQSGQIESLGF--SLYMELLENAVKALQE--GREPTLDEITQQQ 1007 Query: 681 IRILL 685 + I L Sbjct: 1008 VDIEL 1012 >gi|149192400|ref|ZP_01870600.1| transcription-repair coupling factor [Vibrio shilonii AK1] gi|148833765|gb|EDL50802.1| transcription-repair coupling factor [Vibrio shilonii AK1] Length = 702 Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 146/381 (38%), Positives = 214/381 (56%), Gaps = 23/381 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T Q AI ++ DM Q M R++ GDVG GKT VA+ A A + G Q ++ P Sbjct: 150 PFEETDDQAQAINAVMSDMCQPKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVP 209 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQH+E + N I VE+++ ++ L+ +A G+ I++GTH L Sbjct: 210 TTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKAILQDVADGKVDIVVGTHKLLSSD 269 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 IQ+ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S I Sbjct: 270 IQFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA 329 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVV 504 PA R IKT + D V+ + +L E G + Y++ Q+E EK ++ +V Sbjct: 330 TPPARRLAIKTFVRQSE--DSVVR--EAILREIMRGGQVYFLHNQVETIEKVAADLEKLV 385 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + + + HG+M + + E VM+ F + LL+ TT+IE GIDV A+ II Sbjct: 386 PE---------ARVTVAHGQMRERELERVMNDFYHQRFNLLVCTTIIETGIDVPTANTII 436 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GFL 619 ++ A++ GLAQLHQLRGRVGR + LL HP ++K++ RL + + ED GF Sbjct: 437 MDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAVKRLDAIASLEDLGAGFT 496 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG +QSG Sbjct: 497 LATHDLEIRGAGELLGDEQSG 517 >gi|297519880|ref|ZP_06938266.1| transcription-repair coupling factor [Escherichia coli OP50] Length = 612 Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 55 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 114 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 115 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 174 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 175 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 234 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 235 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 285 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 286 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 343 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 344 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 403 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 404 GAGFALATHDLEIRGAGELLGEEQSG 429 >gi|83645461|ref|YP_433896.1| transcription-repair coupling factor [Hahella chejuensis KCTC 2396] gi|83633504|gb|ABC29471.1| transcription-repair coupling factor [Hahella chejuensis KCTC 2396] Length = 1149 Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 146/381 (38%), Positives = 216/381 (56%), Gaps = 21/381 (5%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 PF T Q +AI +LQDM + M R++ GDVG GKT VA+ A A AG Q I+ Sbjct: 599 FPFEETPDQATAINAVLQDMMKPRPMDRLVCGDVGFGKTEVAMRAAFLAAHAGRQVAILT 658 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQH++ + +T I +E+I+ K ++++ G+ I++GTH L Q Sbjct: 659 PTTLLAQQHFQSFQDRFADTAINIELISRFRSAGDIEKVKDKLSDGKVDILVGTHKLLQK 718 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 IQ+ L L+I+DE+HRFGVQQ+ K+ +L +TATPIPRTL L+ G D+S I Sbjct: 719 DIQFKNLGLLIIDEEHRFGVQQKEKVKSLRANIDILTLTATPIPRTLNLSFQGVRDLSII 778 Query: 449 TEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504 P R +KT + N I E + L+ +L G + +++ ++ K S + +V Sbjct: 779 ATPPEKRLSVKTFVQEHNNSIIKEAV--LREIL-RGGQVFFLHNEVNTINKAASELQEMV 835 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + +A+ HG+M + + E VM F + +L+ TT+IE GID+ A+ II Sbjct: 836 P---------DARVAVAHGQMRERELERVMSDFYHKRFNVLMCTTIIETGIDIPSANTII 886 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFL 619 IE A+ FGLAQLHQLRGRVGR + LL PP L++++ RL + + +D GF Sbjct: 887 IERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPRNLTEDAKKRLDAISSAQDLGAGFT 946 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG +QSG Sbjct: 947 LATHDLEIRGAGELLGEEQSG 967 >gi|322833632|ref|YP_004213659.1| transcription-repair coupling factor [Rahnella sp. Y9602] gi|321168833|gb|ADW74532.1| transcription-repair coupling factor [Rahnella sp. Y9602] Length = 1147 Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 147/386 (38%), Positives = 212/386 (54%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM+Q M R++ GDVG GKT VA+ A AV Sbjct: 591 QLFCQAFPFETTPDQAQAINAVLTDMTQPLAMDRLVCGDVGFGKTEVAMRAAFLAVSNNK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQH++ + + + +E+++ + LE G+ IIIGT Sbjct: 651 QVAVLVPTTLLAQQHFDNFRDRFASWPVRIEMMSRFRSAKEQNVVLEDAVEGKVDIIIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQTDLRWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRMAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 +R L + IAI HG+M + D E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IEKASQRLAELVPE--ARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL PP +S +++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAMSADAHKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEGQSG 965 >gi|322386426|ref|ZP_08060055.1| transcription-repair coupling factor [Streptococcus cristatus ATCC 51100] gi|321269512|gb|EFX52443.1| transcription-repair coupling factor [Streptococcus cristatus ATCC 51100] Length = 1167 Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 150/412 (36%), Positives = 231/412 (56%), Gaps = 27/412 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q +I++I +DM M R+L GDVG GKT VA+ A AV Q I+ P Sbjct: 613 PYVETEDQLRSIQEIKKDMESDRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAILVP 672 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY K+ + + V++++ + +++ LE++ GQ IIIGTH L Sbjct: 673 TTVLAQQHYTNFKERFNDFAVNVDVLSRFRSKGEQKETLEKLEKGQIDIIIGTHRLLSAD 732 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +++ L L+++DE+ RFGV+ + KL + VL +TATPIPRTL ++ LG D+S I Sbjct: 733 VKFSDLGLLVIDEEQRFGVKHKEKLKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSVIE 792 Query: 450 EKPAGRKPIKTVIIPINRI---DEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504 P R P++T ++ N+ D V+ + G + Y++ +++ E+K S + ++ Sbjct: 793 TPPTNRYPVQTYVLENNKTVIRDAVLRE----IDRGGQVYYLYNKVDTIEQKVSELKELI 848 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 +SI +HG+MS++ E+ + F NG +L+ TT+IE G+D+ +A+ + Sbjct: 849 PE---------ASIGYVHGQMSEVRLENTLLDFVNGEYDILVTTTIIETGVDIPNANTLF 899 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFL 619 IENA+H GL+ L+QLRGRVGR I+ L+Y P L++ S RL +K TE GF Sbjct: 900 IENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKSLTEVSEKRLEAIKGFTELGSGFK 959 Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669 IA DL R G ILG QSG + E++ LLE IA+K K Q Sbjct: 960 IAMRDLSIRGAGNILGSSQSGFIDSV--GFEMYSQLLEEAIAKKQGKETKRQ 1009 >gi|332077813|gb|EGI88272.1| transcription-repair coupling factor [Streptococcus pneumoniae GA41301] Length = 1171 Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 149/399 (37%), Positives = 224/399 (56%), Gaps = 23/399 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +I++I +DM M R+L GDVG GKT VA+ A AV Q VI+ P Sbjct: 610 PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY K+ QN + +++++ + + LE++ +GQ I+IGTH + Sbjct: 670 TTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 730 VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R P++T ++ N D VI VL E G + Y++ +++ ++V++ Sbjct: 790 TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837 Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E +SI +HGRMS++ E+ + F G +L+ TT+IE G+D+ + + + I Sbjct: 838 VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNTNTLFI 897 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620 ENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF I Sbjct: 898 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 A DL R G +LG QSG + EL+ LLE A Sbjct: 958 AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEA 994 >gi|295698372|ref|YP_003603027.1| ATP-dependent DNA helicase RecG [Candidatus Riesia pediculicola USDA] gi|291157022|gb|ADD79467.1| ATP-dependent DNA helicase RecG [Candidatus Riesia pediculicola USDA] Length = 498 Score = 236 bits (603), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 165/460 (35%), Positives = 252/460 (54%), Gaps = 28/460 (6%) Query: 42 IDLLFYHPSSFIDRHYRPKISEIS--EERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99 +DL+FY P ++ D+ I+E+ EE VT + +K+ +I L D +G Sbjct: 39 LDLIFYFPKNYKDQTKLSLINELKNGEEAFVTAKVFRKNLK----EKKNQVEIYLRDRSG 94 Query: 100 EITLLFFYRKTEMLKNVFFEGRK-ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL--- 155 E+ + FF + L+ FF+ I V GK + KN+I M+HP Y NS NF L Sbjct: 95 ELIVKFF--NSSFLRKKFFKKNSYIQVYGKAYRQKNKIFMIHPEYKILNSFS-NFSLCNF 151 Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQK---KSFPSIAEAFNIIHNP 212 + +Y +G+ D I + ++ I +DL+ K K+F +A IH+P Sbjct: 152 LTPIYPNISGIRQDK---IHKIIKKSIRMIDHCIVQDLIPKPFNKNFIRFQQAIKNIHHP 208 Query: 213 RKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268 ++ PA++RL ++ELLA Q++ L ++K+ P+ V+ I +KI++N Sbjct: 209 NSRCSLNELKKYQHPAQKRLIFEELLAFQLSFLKIKKRNFLLSATPLIVKQSIKKKIIQN 268 Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 +P+S T SQ++AIK+I D+S+ M R+L GDVG+GKT+VAL + A+ Q +M Sbjct: 269 LPYSLTNSQKNAIKEIESDLSKNVPMKRLLYGDVGTGKTIVALFSSLCAISNEKQVALMT 328 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P ILA+QH +F KK + V + + + + L+ I G+A +IIGTH++FQD Sbjct: 329 PTEILAKQHADFFKKILKPIGKRVIQLCKDSDRKNYESKLDEIKKGKALVIIGTHSIFQD 388 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQK----ATAPHVLLMTATPIPRTLVLTSLGDID 444 I + L LVI+DEQHRFGV QR KL +K T H L+MTATPIPRTL + ++D Sbjct: 389 KIDFCSLSLVIIDEQHRFGVSQRSKLLKKGKLCGTHVHQLIMTATPIPRTLSMQIYANLD 448 Query: 445 ISKITE-KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483 S I R P++T+II R DE+I R+K + + K Sbjct: 449 ASSIDNLHNPKRIPVRTIIISNIRRDELIYRIKNIFEKKK 488 >gi|301300308|ref|ZP_07206515.1| transcription-repair coupling factor [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852081|gb|EFK79758.1| transcription-repair coupling factor [Lactobacillus salivarius ACS-116-V-Col5a] Length = 1174 Score = 236 bits (603), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 144/429 (33%), Positives = 238/429 (55%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R E +A ++ L +++ +K G + ++ P++ T Q Sbjct: 568 EWAKTKRRVANKIEDIADELVDLYAKREAEK--GYAFTPDDSYQKEFEDAFPYTETPDQL 625 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + K+I QDM + M R+L GDVG GKT VAL A AV+ G Q +AP +LAQQHY Sbjct: 626 RSAKEIKQDMEKTKPMDRLLIGDVGYGKTEVALRAAFKAVQDGKQVAFLAPTTVLAQQHY 685 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E +++ +N + + I++ ++ +E + G+ I++GTH L +++ L L+ Sbjct: 686 ETMEQRFENFPVEIGILSRFNTAKEIKETIENLETGKLDIVVGTHRLLSKDVKFADLGLL 745 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L + T+ VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 746 IIDEEQRFGVKHKERLKELKTSVDVLTLTATPIPRTLNMSMLGVRDLSVIETAPMNRYPI 805 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516 +T +I N +++ +K + G + +++ +++ EK S S+V + Sbjct: 806 QTYVIEKN-YGVIVDGIKREIERGGQVFYLHNRVDDIEKVASELESLVPE---------A 855 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 +A IHGRM++ E+++ F +G +L+ TT+IE G+D+ + + + ++NA+ GL+QL Sbjct: 856 KVAYIHGRMTETQLENILIDFIDGEYDVLVTTTIIETGVDIPNVNTLFVDNADRKGLSQL 915 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGRVGR I+ +Y P L++ + RL +K+ TE GF IA DL R G Sbjct: 916 YQLRGRVGRSNRIAYAYFMYQPNKVLTEVAEKRLEAIKDFTELGSGFKIAMRDLSIRGAG 975 Query: 632 EILGIKQSG 640 +LG +Q G Sbjct: 976 NLLGKQQHG 984 >gi|18396054|ref|NP_566160.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana] gi|332640233|gb|AEE73754.1| putative DEAD/DEAH box helicase [Arabidopsis thaliana] Length = 823 Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 143/381 (37%), Positives = 222/381 (58%), Gaps = 17/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 P++ T Q+ A D+ +D++++ M R++ GDVG GKT VAL A+ V G QA++ Sbjct: 265 QFPYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSTGKQAMV 324 Query: 327 MAPIGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +AP +LA+QHY+ I ++++ I V +++ +A + + LE I G +II+GTH+L Sbjct: 325 LAPTIVLAKQHYDVISERFSLYPHIKVGLLSRFQTKAEKEEYLEMIKTGHLNIIVGTHSL 384 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445 + Y L L++VDE+ RFGV+Q+ K+ T+ VL ++ATPIPRTL L G D Sbjct: 385 LGSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDA 444 Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 S I+ P R PIKT + R ++VIE +K L G + +++ P+I + + E Sbjct: 445 SLISTPPPERIPIKTHLSSF-RKEKVIEAIKNELDRGGQVFYVLPRI--------KGLEE 495 Query: 506 RFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L E F IA+ HG+ E M+ F G K+LI T ++E G+D+ +A+ II Sbjct: 496 VMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTII 555 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFL 619 I++ + FGLAQL+QLRGRVGR ++ + L Y LS + RLS L+ + GF Sbjct: 556 IQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRELGQGFQ 615 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +AE+D+ R G I G +Q+G Sbjct: 616 LAEKDMGIRGFGTIFGEQQTG 636 >gi|262165996|ref|ZP_06033733.1| transcription-repair coupling factor [Vibrio mimicus VM223] gi|262025712|gb|EEY44380.1| transcription-repair coupling factor [Vibrio mimicus VM223] Length = 981 Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 146/383 (38%), Positives = 213/383 (55%), Gaps = 23/383 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI +L DM Q M R++ GDVG GKT VA+ A A + G Q ++ Sbjct: 426 TFPFEETDDQAMAINAVLSDMCQPKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 485 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ +++ L+ + G+ I++GTH L Sbjct: 486 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVTDGKVDILVGTHKLLS 545 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 546 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 605 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502 I PA R IKT + D VI + VL E G + Y++ Q+E +K ++ Sbjct: 606 IATPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEK 661 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 +V + + + HG+M + + E VM+ F + LL+ TT+IE GIDV A+ Sbjct: 662 LVPE---------ARVTVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 712 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617 II++ A+ GLAQLHQLRGRVGR + LL PP ++K++ RL + + ED G Sbjct: 713 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAG 772 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F +A DL+ R GE+LG +QSG Sbjct: 773 FTLATHDLEIRGAGELLGEEQSG 795 >gi|312883532|ref|ZP_07743257.1| transcription-repair coupling factor [Vibrio caribbenthicus ATCC BAA-2122] gi|309368755|gb|EFP96282.1| transcription-repair coupling factor [Vibrio caribbenthicus ATCC BAA-2122] Length = 1154 Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 214/382 (56%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI ++ DM Q M R++ GDVG GKT VA+ A A + G Q ++ Sbjct: 600 GFPFEETDDQAMAINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 659 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ +++ LE I G+ +++GTH L Sbjct: 660 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKTAKEQKRILEDIEAGKVDLVVGTHKLLS 719 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 720 NDIKFKDLGLLIVDEEHRFGVRQKEKMKSMRADVDILTLTATPIPRTLNMAMSGMRDLSI 779 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503 I PA R IKT + + D+V+ R + + G + Y++ Q+E EK S + Sbjct: 780 IATPPARRLAIKTF---VRQKDDVVVREAALREIMRGGQVYFLHNQVETIEKVASELEKL 836 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + + + HG+M + + E +M+ F + LL+ TT+IE GIDV A+ I Sbjct: 837 IPE---------ARVTFAHGQMRERELEQIMNDFYHQRYNLLVCTTIIETGIDVPTANTI 887 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GF 618 I++ A++ GLAQLHQLRGRVGR + LL HP ++K++ RL + + ED GF Sbjct: 888 IMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAITKDAIKRLDAIASLEDLGAGF 947 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG +QSG Sbjct: 948 TLATHDLEIRGAGELLGDEQSG 969 >gi|149376584|ref|ZP_01894344.1| transcription-repair coupling protein Mfd [Marinobacter algicola DG893] gi|149359102|gb|EDM47566.1| transcription-repair coupling protein Mfd [Marinobacter algicola DG893] Length = 1038 Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 150/432 (34%), Positives = 236/432 (54%), Gaps = 27/432 (6%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W++ ++ L A ++ + R++ +K G + + PF T Q++ Sbjct: 444 WSNAKQKALEKIRDTAAELLDVYARREARK--GFAFEDPKEAYRAFAAGFPFEETPDQQA 501 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI+ + +DM + M R++ GDVG GKT VA+ A A +G Q ++ P +LAQQHYE Sbjct: 502 AIEAVFEDMVSEKPMDRLVCGDVGFGKTEVAMRAAFMATYSGKQVAVLVPTTLLAQQHYE 561 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 + T + VE+++ KA+ I G+A I+IGTH L Q I++ L LVI Sbjct: 562 SFRDRFSETAVHVELLSRFRSGGQTTKAMAAIEAGKADIVIGTHKLLQGDIKFKNLGLVI 621 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI-DISKITEKPAGRKPI 458 +DE+HRFGVQQ+ +L +L +TATPIPRTL + ++G + D+S I PA R + Sbjct: 622 IDEEHRFGVQQKERLKALRAEVDMLNLTATPIPRTLNM-AMGHLRDLSIIATPPARRLSV 680 Query: 459 KTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEH 513 KT + + DE + + + +L E G + Y++ + EK + R ++ Sbjct: 681 KTF---VRQRDEAMVK-EAILREVLRGGQVYFLHNDVATIEKTAEDLRQLIPE------- 729 Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 + + + HG+M + + E +M F + +L+ TT+IE GID+ A+ IIIE A+ FGL Sbjct: 730 --ARVGVAHGQMRERELEQIMSDFYHKRFNVLVCTTIIETGIDIPSANTIIIERADKFGL 787 Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628 AQLHQLRGRVGR + LL PP ++ ++ RL + +D GF++A DL+ R Sbjct: 788 AQLHQLRGRVGRSHHQAYAYLLTPPPRSITSDAKKRLEAISEAQDLGAGFMLATHDLEIR 847 Query: 629 KEGEILGIKQSG 640 GE+LG +QSG Sbjct: 848 GAGELLGEEQSG 859 >gi|145331730|ref|NP_001078092.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana] gi|6513947|gb|AAF14851.1|AC011664_33 putative helicase [Arabidopsis thaliana] gi|332640234|gb|AEE73755.1| putative DEAD/DEAH box helicase [Arabidopsis thaliana] Length = 822 Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 143/381 (37%), Positives = 222/381 (58%), Gaps = 17/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 P++ T Q+ A D+ +D++++ M R++ GDVG GKT VAL A+ V G QA++ Sbjct: 264 QFPYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSTGKQAMV 323 Query: 327 MAPIGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +AP +LA+QHY+ I ++++ I V +++ +A + + LE I G +II+GTH+L Sbjct: 324 LAPTIVLAKQHYDVISERFSLYPHIKVGLLSRFQTKAEKEEYLEMIKTGHLNIIVGTHSL 383 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445 + Y L L++VDE+ RFGV+Q+ K+ T+ VL ++ATPIPRTL L G D Sbjct: 384 LGSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDA 443 Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 S I+ P R PIKT + R ++VIE +K L G + +++ P+I + + E Sbjct: 444 SLISTPPPERIPIKTHLSSF-RKEKVIEAIKNELDRGGQVFYVLPRI--------KGLEE 494 Query: 506 RFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L E F IA+ HG+ E M+ F G K+LI T ++E G+D+ +A+ II Sbjct: 495 VMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTII 554 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFL 619 I++ + FGLAQL+QLRGRVGR ++ + L Y LS + RLS L+ + GF Sbjct: 555 IQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRELGQGFQ 614 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +AE+D+ R G I G +Q+G Sbjct: 615 LAEKDMGIRGFGTIFGEQQTG 635 >gi|254374445|ref|ZP_04989927.1| hypothetical protein FTDG_00614 [Francisella novicida GA99-3548] gi|151572165|gb|EDN37819.1| hypothetical protein FTDG_00614 [Francisella novicida GA99-3548] Length = 1141 Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 145/386 (37%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 + + P+ T Q SAI D+ +DM M R++ GDVG GKT +A+ A A + Q Sbjct: 589 RFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQ 648 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 I+ P ILAQQHY K NT + +E+IT + +++ E + G IIIGTH Sbjct: 649 VAILVPTTILAQQHYNSFKDRFTNTAVNIEVITRSKTPKAQQQLFEDLKKGTVDIIIGTH 708 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443 L I + L L+I+DE+HRFGV Q+ KL +L M+ATPIPR+L + Sbjct: 709 KLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALR 768 Query: 444 DISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESN 499 D+S I PA R +KT + N I E + R + G + +++ ++E +KK+ Sbjct: 769 DLSIIASPPAKRLSVKTFVKEYDNNIIREAVSRETI---RGGQIFYLYNKVETIQKKKEI 825 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + + R IAI HG+MS+ + + VM FK+ +L+ TT+IE GID+ + Sbjct: 826 LQELFPRL---------RIAIAHGQMSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPN 876 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED- 616 A+ +IIE+A + GLAQLHQLRGRVGR + +L ++K++ RL + NTE Sbjct: 877 ANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNEASITKDALKRLEAISNTESL 936 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GEILG +QSG Sbjct: 937 GGGFTLANHDLEIRGAGEILGEEQSG 962 >gi|209809474|ref|YP_002265012.1| transcription-repair coupling factor [Aliivibrio salmonicida LFI1238] gi|208011036|emb|CAQ81450.1| transcription-repair coupling factor [Aliivibrio salmonicida LFI1238] Length = 1151 Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 149/383 (38%), Positives = 215/383 (56%), Gaps = 23/383 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + PF T QE AI D+L DM Q M R++ GDVG GKT VA+ A A Q ++ Sbjct: 600 SFPFEETHDQEIAINDVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFLATNNEKQVAVL 659 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ +++ L A G+ I+IGTH L Q Sbjct: 660 VPTTLLAQQHFENFRDRFANFPIRVEVLSRFKSAKEQKEILAATAEGKVDILIGTHKLLQ 719 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 DSI++ L L++VDE+HRFGV+Q+ K+ + +L +TATPIPRTL + G D+S Sbjct: 720 DSIKFDDLGLLVVDEEHRFGVRQKEKVKAMRSDVDILTLTATPIPRTLNMAMSGMRDLSI 779 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502 I PA R IKT + + D+VI+ + +L E G + Y + +E E + + Sbjct: 780 IATPPARRLAIKTFV--REKADDVIK--EAILREIKRGGQVYVLHNNVETIESAAKDIEN 835 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 ++ + + + HG+M + + E +M F + +L+ TT+IE GIDV A+ Sbjct: 836 LIPE---------ARVTLAHGQMRERELERIMGDFYHQRFNVLVCTTIIETGIDVPTANT 886 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---G 617 II+E A+ GLAQLHQLRGRVGR + LL HP LSK++ RL + + ED G Sbjct: 887 IIMERADKLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKALSKDAVKRLDAIASLEDLGAG 946 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F +A DL+ R GE+LG QSG Sbjct: 947 FTLATHDLEIRGAGELLGDGQSG 969 >gi|260776195|ref|ZP_05885090.1| transcription-repair coupling factor [Vibrio coralliilyticus ATCC BAA-450] gi|260607418|gb|EEX33683.1| transcription-repair coupling factor [Vibrio coralliilyticus ATCC BAA-450] Length = 1153 Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 145/383 (37%), Positives = 216/383 (56%), Gaps = 23/383 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI ++ DM Q M R++ GDVG GKT VA+ A A + G Q ++ Sbjct: 599 GFPFEETDDQSMAINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFLATDNGKQVAVL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ +++ L+ I G+ +++GTH L Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKTAKEQKQVLQDIEDGKVDLVVGTHKLLS 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 719 NDIKFKDLGLLIVDEEHRFGVRQKEKMKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502 I PA R IKT + R D V+ + VL E G + Y++ Q+E EK ++ Sbjct: 779 IATPPARRLAIKTFV--RQRDDAVVR--EAVLREIMRGGQIYFLHNQVETIEKVAADLEK 834 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 ++ + I + HG+M + + E +M+ F + LL+ TT+IE GIDV A+ Sbjct: 835 LIPE---------ARITVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANT 885 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---G 617 II++ A++ GLAQLHQLRGRVGR + LL HP ++K++ RL + + ED G Sbjct: 886 IIMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAG 945 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F +A DL+ R GE+LG +QSG Sbjct: 946 FTLATHDLEIRGAGELLGDEQSG 968 >gi|225451661|ref|XP_002276313.1| PREDICTED: similar to DEAD/DEAH box helicase, putative [Vitis vinifera] Length = 823 Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 143/378 (37%), Positives = 217/378 (57%), Gaps = 17/378 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 + PT Q+ A D+ +D++++ M R++ GDVG GKT VAL A+ V AG QA+++AP Sbjct: 268 YEPTPDQKQAFIDVEEDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 327 Query: 330 IGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 +LA+QH++ I +++++ I V +++ A + K L I HG II+GTH+L + Sbjct: 328 TIVLAKQHFDVITERFSKYPNIKVGLLSRFQTTAEKEKHLRMIKHGDLDIIVGTHSLLGN 387 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 + Y L L++VDE+ RFGV+Q+ K+ T+ VL ++ATPIPRTL L G D S I Sbjct: 388 RVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLI 447 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 + P R PI T + N+ +++I +K L G + +++ P+I + + E Sbjct: 448 STPPPERVPIITHLSAYNK-EKIISAIKFELGRGGQIFYVLPRI--------KGLEEVME 498 Query: 509 SLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 L F IAI HG+ E MD F G K+LI T ++E G+D+ +A+ III+ Sbjct: 499 FLECSFPDVEIAIAHGKQYSKQLEETMDRFAQGEIKILICTNIVESGLDIQNANTIIIQE 558 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622 + FGLAQL+QLRGRVGR ++ + L Y LS + RLS L+ D GF +AE Sbjct: 559 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRDLGQGFQLAE 618 Query: 623 EDLKQRKEGEILGIKQSG 640 D+ R G I G +Q+G Sbjct: 619 RDMGIRGFGNIFGEQQTG 636 >gi|254508504|ref|ZP_05120622.1| transcription-repair coupling factor [Vibrio parahaemolyticus 16] gi|219548529|gb|EED25536.1| transcription-repair coupling factor [Vibrio parahaemolyticus 16] Length = 1153 Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 141/382 (36%), Positives = 217/382 (56%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q+ AI ++ DM Q M R++ GDVG GKT VA+ A A + G Q ++ Sbjct: 599 GFPFEETDDQKMAINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFLATDNGKQVAVL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ +++ L+ I G+ +++GTH L Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKTAKEQKQVLQDIEEGKVDLVVGTHKLLS 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 719 NDIKFKDLGLLIVDEEHRFGVRQKEKMKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503 I PA R IKT + + D+ + R V+ + G + Y++ Q+E EK ++ + Sbjct: 779 IATPPARRLAIKTF---VRQSDDAVIREAVLREIMRGGQVYFLHNQVETIEKVAADLEKL 835 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + + + + HG+M + + E +M+ F + LL+ TT+IE GIDV A+ I Sbjct: 836 IPE---------ARVTVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTI 886 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GF 618 I++ A++ GLAQLHQLRGRVGR + LL HP ++K++ RL + + ED GF Sbjct: 887 IMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGF 946 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG +QSG Sbjct: 947 TLATHDLEIRGAGELLGDEQSG 968 >gi|82777273|ref|YP_403622.1| transcription-repair coupling factor [Shigella dysenteriae Sd197] gi|309788186|ref|ZP_07682792.1| transcription-repair coupling factor [Shigella dysenteriae 1617] gi|81241421|gb|ABB62131.1| transcription-repair coupling factor [Shigella dysenteriae Sd197] gi|308924038|gb|EFP69539.1| transcription-repair coupling factor [Shigella dysenteriae 1617] Length = 1148 Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 152/409 (37%), Positives = 223/409 (54%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G E + Q + PF T Q AI +L DM Q M R++ Sbjct: 568 LLDIYAQRAAKEGFAFKHEREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 627 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV+ Q ++ P +LAQQHY+ + N + +E+++ Sbjct: 628 GDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFR 687 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + L +A G+ I+IGTH L Q +++ L L+IVDE+HRFGV+ + ++ Sbjct: 688 SAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRA 747 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 ++L +TATPIPRTL + G D+S I PA R +KT + D ++ R + +L Sbjct: 748 NVNILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDSLVVR-EAIL 803 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ +E N + ER L + IAI HG+M + + E VM+ Sbjct: 804 REILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIAIGHGQMRERELERVMND 856 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ TT+IE GID+ A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 916 Query: 597 -HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 HP ++ ++ RL + ED GF +A DL+ R GE+LG +QSG Sbjct: 917 PHPKAMTTDAQKRLEATASLEDLGAGFALATHDLEIRGAGELLGEEQSG 965 >gi|127512559|ref|YP_001093756.1| transcription-repair coupling factor [Shewanella loihica PV-4] gi|126637854|gb|ABO23497.1| transcription-repair coupling factor [Shewanella loihica PV-4] Length = 1160 Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 153/431 (35%), Positives = 236/431 (54%), Gaps = 25/431 (5%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 WT R+ + +A ++ + R+Q + G ++ + + + PF T QE+ Sbjct: 558 WTKAKRKAIEKIRDVAAELLDVYARRQARP--GEACRLDREEYAQFAGSFPFEETVDQET 615 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI +L DM M R++ GDVG GKT VA+ A AV G Q I+ P +LAQQHYE Sbjct: 616 AIDAVLTDMCSPISMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVAILVPTTLLAQQHYE 675 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 K + I +E+++ ++ L+++ GQ I+IGTH L Q ++ L L+I Sbjct: 676 NFKDRFADWPIKIEVMSRFKTAKEQQAVLKQLELGQVDIVIGTHKLLQSEAKFENLGLLI 735 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 +DE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S I PA R +K Sbjct: 736 IDEEHRFGVRQKEKIKALRANIDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVK 795 Query: 460 TVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 T + D+ R + +L E G + Y++ +E EK+ +++ Sbjct: 796 TF---VREYDDATVR-EALLREILRGGQVYFLHNSVETIEKRAREIEALLPE-------- 843 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + + HG+M + D E VM F + +L+ TT+IE GIDV A+ IIIE A++FGLA Sbjct: 844 -ARVVTAHGQMRERDLEKVMSDFYHQKYNVLVCTTIIETGIDVPSANTIIIERADNFGLA 902 Query: 575 QLHQLRGRVGRG-EEISSCILLYHPP-LSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629 QLHQLRGRVGR + + +++ HP ++K++ RL + ED GF++A +DL+ R Sbjct: 903 QLHQLRGRVGRSHHQAYAYLMMPHPKRMTKDAIKRLEAIGALEDLGAGFMLATQDLEIRG 962 Query: 630 EGEILGIKQSG 640 GE+LG +QSG Sbjct: 963 AGELLGDEQSG 973 >gi|322412921|gb|EFY03828.1| putative transcription-repair coupling factor [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 1166 Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 154/441 (34%), Positives = 237/441 (53%), Gaps = 25/441 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + + ++ G + + + + F T+ Q +I +I DM M +L Sbjct: 579 LLALYAERSQQKGFQFSPDDDLQWSFDDDFAFVETEDQIRSINEIKADMESVQPMDSLLI 638 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQHYE K +N + V++++ Sbjct: 639 GDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYENFKARFENYPVEVDVLSRFR 698 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + + LER+ GQ IIIGTH L + + L L+++DE+ RFGV+ + L + T Sbjct: 699 SKKEQAQTLERVRKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKT 758 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N + E I R Sbjct: 759 KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIR--- 815 Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 + G + +++ +++ +KK + + +V +SI +HG+MS+I E+ + Sbjct: 816 EMDRGGQVFYVYNKVDTIDKKVAELQELVPE---------ASIGFVHGQMSEIQLENTLI 866 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F NG +L+ATT+IE G+D+ + + + +ENA+H GL+ L+QLRGRVGR I+ L+ Sbjct: 867 DFINGEYDVLVATTIIETGVDISNVNTLFVENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926 Query: 596 YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 Y P L++ S RL +K TE GF IA DL R G ILG QSG + E Sbjct: 927 YRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 984 Query: 651 LHDSLLE--IARKDAKHILTQ 669 ++ LLE IA K K + Q Sbjct: 985 MYSQLLEQAIASKQGKTTVRQ 1005 >gi|209773002|gb|ACI84813.1| transcription-repair coupling factor [Escherichia coli] gi|326339337|gb|EGD63151.1| Transcription-repair coupling factor [Escherichia coli O157:H7 str. 1125] Length = 1148 Score = 236 bits (602), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 147/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+++ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|227891598|ref|ZP_04009403.1| transcription-repair coupling factor [Lactobacillus salivarius ATCC 11741] gi|227866745|gb|EEJ74166.1| transcription-repair coupling factor [Lactobacillus salivarius ATCC 11741] Length = 1174 Score = 236 bits (602), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 144/429 (33%), Positives = 238/429 (55%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R E +A ++ L +++ +K G + ++ P++ T Q Sbjct: 568 EWAKTKRRVANKIEDIADELVDLYAKREAEK--GYAFTPDDSYQKEFEDAFPYTETPDQL 625 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + K+I QDM + M R+L GDVG GKT VAL A AV+ G Q +AP +LAQQHY Sbjct: 626 RSSKEIKQDMEKLKPMDRLLIGDVGYGKTEVALRAAFKAVQDGKQVAFLAPTTVLAQQHY 685 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E +++ +N + + I++ ++ +E + G+ I++GTH L +++ L L+ Sbjct: 686 ETMEQRFENFPVEIGILSRFNTAKEIKETIENLETGKLDIVVGTHRLLSKDVKFADLGLL 745 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L + T+ VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 746 IIDEEQRFGVKHKERLKELKTSVDVLTLTATPIPRTLNMSMLGVRDLSVIETAPMNRYPI 805 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516 +T +I N +++ +K + G + +++ +++ EK S S+V + Sbjct: 806 QTYVIEKN-YGVIVDGIKREIERGGQVFYLHNRVDDIEKVASELESLVPE---------A 855 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 +A IHGRM++ E+++ F +G +L+ TT+IE G+D+ + + + ++NA+ GL+QL Sbjct: 856 KVAYIHGRMTETQLENILIDFIDGEYDVLVTTTIIETGVDIPNVNTLFVDNADRMGLSQL 915 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGRVGR I+ +Y P L++ + RL +K+ TE GF IA DL R G Sbjct: 916 YQLRGRVGRSNRIAYAYFMYQPNKVLTEVAEKRLEAIKDFTELGSGFKIAMRDLSIRGAG 975 Query: 632 EILGIKQSG 640 +LG +Q G Sbjct: 976 NLLGKQQHG 984 >gi|319426232|gb|ADV54306.1| transcription-repair coupling factor [Shewanella putrefaciens 200] Length = 1162 Score = 236 bits (602), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 158/430 (36%), Positives = 233/430 (54%), Gaps = 29/430 (6%) Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 + PF T QESAI +L DM M R++ GDVG GKT VA+ A AV AG Q V+ Sbjct: 607 QGFPFEETVDQESAIHAVLADMRSPIAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVV 666 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 + P +LAQQHYE K + ++ E+++ + + L+++ G+ I+IGTH L Sbjct: 667 LVPTTLLAQQHYENFKDRFADWPVVTEVMSRFRTAKEQTQVLKQLEEGKVDIVIGTHKLL 726 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 Q ++ L L+I+DE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 727 QSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLS 786 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFR 501 I PA R +KT + R ++ + +L E G + Y++ +E EK Sbjct: 787 IIATPPAKRLAVKTFV----RESDLATVREAILREILRGGQVYYLHNNVESIEKCAQGII 842 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 +V + + + HG+M + D E VM F + +L+ TT+IE GIDV A+ Sbjct: 843 DLVPE---------ARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSAN 893 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED--- 616 IIIE A+ FGLAQLHQLRGRVGR + L+ HP ++ ++ RL + ED Sbjct: 894 TIIIERADTFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTSDARKRLEAIDALEDLGA 953 Query: 617 GFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 GF++A +DL+ R GE+LG +QSG + K + L+ +LE A K K ++P L Sbjct: 954 GFMLATQDLEIRGAGELLGDEQSGHISKIGFS---LYMEMLEAAVKALKQ--GKEPSLAQ 1008 Query: 676 VRGQSIRILL 685 + Q I L Sbjct: 1009 MLNQQCEIEL 1018 >gi|251792001|ref|YP_003006721.1| transcription-repair coupling factor [Aggregatibacter aphrophilus NJ8700] gi|247533388|gb|ACS96634.1| transcription-repair coupling factor [Aggregatibacter aphrophilus NJ8700] Length = 1151 Score = 236 bits (602), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 146/409 (35%), Positives = 233/409 (56%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + + G + + Q+ PF T Q AI ++ DM+ M R++ Sbjct: 570 LLDVYAQREAQKGFAFRYDREEFQQFTATFPFEETHDQLMAINAVISDMTLPKAMDRLVC 629 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQH++ K N + VE+++ Sbjct: 630 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHFDNFKDRFANLPVNVEMLSRFK 689 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +++ ++ +A G+ I+IGTH + Q +Q++ L L+I+DE+HRFGV+Q+ K+ Q Sbjct: 690 TAKEQKQVIQDLADGKVDILIGTHKIIQGDVQFHDLGLLIIDEEHRFGVRQKEKMKQLRA 749 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I+ PA R IKT + + DE++ R + +L Sbjct: 750 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLTIKTF---VRQTDELVIR-EAIL 805 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ + ++ + E+ +L + + + HG+M + + E VM Sbjct: 806 REILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVIVGHGQMRERELERVMSD 858 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ +T+IE GIDV A+ IIIE A++FGLAQLHQLRGRVGR + LL Sbjct: 859 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADNFGLAQLHQLRGRVGRSHHQAYAYLLT 918 Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 PP ++K++ RL L++ ++ GF++A DL+ R GE+LG +QSG Sbjct: 919 PPPKLMTKDAQKRLEALESLDNLGAGFILATHDLEIRGAGELLGNEQSG 967 >gi|117621017|ref|YP_856534.1| transcription-repair coupling factor [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562424|gb|ABK39372.1| transcription-repair coupling factor [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1154 Score = 236 bits (602), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 148/382 (38%), Positives = 210/382 (54%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q +AI +L DM Q M R++ GDVG GKT VA+ A AV G Q ++ Sbjct: 602 GFPFEETDDQLNAINAVLGDMCQAKSMDRLVCGDVGFGKTEVAMRAAFVAVHGGKQVAVL 661 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY+ + N + VE+++ + ++ +A G+ IIIGTH L Sbjct: 662 VPTTLLAQQHYDNFRDRFANWPVRVEVLSRFRSAKEQTAVMKELAEGKVDIIIGTHKLLG 721 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + + L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 722 AELTFKDLGLLIVDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMAMSGMRDLSI 781 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503 I PA R IKT + + + + R V+ L G + Y++ +E EK ++ + Sbjct: 782 IATPPAKRLAIKTF---VRQQEPAVTREAVLRELKRGGQVYYLHNDVESIEKCAADLAEL 838 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 V + I I HG+M + + E VM F + LL+ TT+IE GIDV A+ I Sbjct: 839 VPE---------ARIGIAHGQMRERELERVMSDFYHQRFNLLVCTTIIETGIDVPSANTI 889 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPPL-SKNSYTRLSVLKNTED---GF 618 I++ A+H GLAQLHQLRGRVGR + LL HP L +K++ RL + + ED GF Sbjct: 890 IMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKLMTKDAAKRLEAIASLEDLGAGF 949 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG QSG Sbjct: 950 ALATHDLEIRGAGELLGDDQSG 971 >gi|15830746|ref|NP_309519.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. Sakai] gi|168751336|ref|ZP_02776358.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4113] gi|168757829|ref|ZP_02782836.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4401] gi|168764889|ref|ZP_02789896.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4501] gi|168771340|ref|ZP_02796347.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4486] gi|168783484|ref|ZP_02808491.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4076] gi|168790092|ref|ZP_02815099.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC869] gi|168802501|ref|ZP_02827508.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC508] gi|195938873|ref|ZP_03084255.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4024] gi|208809609|ref|ZP_03251946.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4206] gi|208815000|ref|ZP_03256179.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4045] gi|208822485|ref|ZP_03262804.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4042] gi|209399391|ref|YP_002269959.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4115] gi|217328545|ref|ZP_03444627.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. TW14588] gi|254792497|ref|YP_003077334.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. TW14359] gi|261226982|ref|ZP_05941263.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. FRIK2000] gi|261256216|ref|ZP_05948749.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. FRIK966] gi|291282134|ref|YP_003498952.1| transcription-repair coupling factor [Escherichia coli O55:H7 str. CB9615] gi|13360956|dbj|BAB34915.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. Sakai] gi|188014612|gb|EDU52734.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4113] gi|188999153|gb|EDU68139.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4076] gi|189355265|gb|EDU73684.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4401] gi|189359855|gb|EDU78274.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4486] gi|189365183|gb|EDU83599.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4501] gi|189370352|gb|EDU88768.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC869] gi|189375509|gb|EDU93925.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC508] gi|208729410|gb|EDZ79011.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4206] gi|208731648|gb|EDZ80336.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4045] gi|208737970|gb|EDZ85653.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4042] gi|209160791|gb|ACI38224.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4115] gi|209772998|gb|ACI84811.1| transcription-repair coupling factor [Escherichia coli] gi|209773000|gb|ACI84812.1| transcription-repair coupling factor [Escherichia coli] gi|209773004|gb|ACI84814.1| transcription-repair coupling factor [Escherichia coli] gi|209773006|gb|ACI84815.1| transcription-repair coupling factor [Escherichia coli] gi|217318972|gb|EEC27398.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. TW14588] gi|254591897|gb|ACT71258.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. TW14359] gi|290762007|gb|ADD55968.1| transcription-repair coupling factor [Escherichia coli O55:H7 str. CB9615] gi|320188121|gb|EFW62786.1| Transcription-repair coupling factor [Escherichia coli O157:H7 str. EC1212] gi|320637565|gb|EFX07365.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. G5101] gi|320643126|gb|EFX12327.1| transcription-repair coupling factor [Escherichia coli O157:H- str. 493-89] gi|320648584|gb|EFX17239.1| transcription-repair coupling factor [Escherichia coli O157:H- str. H 2687] gi|320653898|gb|EFX21972.1| transcription-repair coupling factor [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659379|gb|EFX26948.1| transcription-repair coupling factor [Escherichia coli O55:H7 str. USDA 5905] gi|320664514|gb|EFX31665.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. LSU-61] gi|326340418|gb|EGD64221.1| Transcription-repair coupling factor [Escherichia coli O157:H7 str. 1044] Length = 1148 Score = 236 bits (602), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 147/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+++ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|208779432|ref|ZP_03246778.1| transcription-repair coupling factor [Francisella novicida FTG] gi|208745232|gb|EDZ91530.1| transcription-repair coupling factor [Francisella novicida FTG] Length = 1141 Score = 236 bits (602), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 145/386 (37%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 + + P+ T Q SAI D+ +DM M R++ GDVG GKT +A+ A A + Q Sbjct: 589 RFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQ 648 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 I+ P ILAQQHY K NT + +E+IT + +++ E + G IIIGTH Sbjct: 649 VAILVPTTILAQQHYNSFKDRFTNTAVNIEVITRSKTPKAQQQLFEDLKKGTVDIIIGTH 708 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443 L I + L L+I+DE+HRFGV Q+ KL +L M+ATPIPR+L + Sbjct: 709 KLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALR 768 Query: 444 DISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESN 499 D+S I PA R +KT + N I E + R + G + +++ ++E +KK+ Sbjct: 769 DLSIIASPPAKRLSVKTFVKEYDNNIIREAVSRETI---RGGQIFYLYNKVETIQKKKEI 825 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + + R IAI HG+MS+ + + VM FK+ +L+ TT+IE GID+ + Sbjct: 826 LQELFPRL---------RIAIAHGQMSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPN 876 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED- 616 A+ +IIE+A + GLAQLHQLRGRVGR + +L ++K++ RL + NTE Sbjct: 877 ANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNEASITKDALKRLEAISNTESL 936 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GEILG +QSG Sbjct: 937 GGGFTLANHDLEIRGAGEILGEEQSG 962 >gi|118497630|ref|YP_898680.1| transcription-repair coupling factor [Francisella tularensis subsp. novicida U112] gi|195536331|ref|ZP_03079338.1| transcription-repair coupling factor [Francisella tularensis subsp. novicida FTE] gi|118423536|gb|ABK89926.1| transcription-repair coupling factor [Francisella novicida U112] gi|194372808|gb|EDX27519.1| transcription-repair coupling factor [Francisella tularensis subsp. novicida FTE] Length = 1141 Score = 236 bits (602), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 145/386 (37%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 + + P+ T Q SAI D+ +DM M R++ GDVG GKT +A+ A A + Q Sbjct: 589 RFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQ 648 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 I+ P ILAQQHY K NT + +E+IT + +++ E + G IIIGTH Sbjct: 649 VAILVPTTILAQQHYNSFKDRFTNTAVNIEVITRSKTPKAQQQLFEDLKKGTVDIIIGTH 708 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443 L I + L L+I+DE+HRFGV Q+ KL +L M+ATPIPR+L + Sbjct: 709 KLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALR 768 Query: 444 DISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESN 499 D+S I PA R +KT + N I E + R + G + +++ ++E +KK+ Sbjct: 769 DLSIIASPPAKRLSVKTFVKEYDNNIIREAVSRETI---RGGQIFYLYNKVETIQKKKEI 825 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + + R IAI HG+MS+ + + VM FK+ +L+ TT+IE GID+ + Sbjct: 826 LQELFPRL---------RIAIAHGQMSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPN 876 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED- 616 A+ +IIE+A + GLAQLHQLRGRVGR + +L ++K++ RL + NTE Sbjct: 877 ANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNEASITKDALKRLEAISNTESL 936 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GEILG +QSG Sbjct: 937 GGGFTLANHDLEIRGAGEILGEEQSG 962 >gi|332678337|gb|AEE87466.1| Transcription-repair coupling factor [Francisella cf. novicida Fx1] Length = 1141 Score = 236 bits (602), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 145/386 (37%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 + + P+ T Q SAI D+ +DM M R++ GDVG GKT +A+ A A + Q Sbjct: 589 RFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQ 648 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 I+ P ILAQQHY K NT + +E+IT + +++ E + G IIIGTH Sbjct: 649 VAILVPTTILAQQHYNSFKDRFTNTAVNIEVITRSKTPKAQQQLFEDLKKGTVDIIIGTH 708 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443 L I + L L+I+DE+HRFGV Q+ KL +L M+ATPIPR+L + Sbjct: 709 KLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALR 768 Query: 444 DISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESN 499 D+S I PA R +KT + N I E + R + G + +++ ++E +KK+ Sbjct: 769 DLSIIASPPAKRLSVKTFVKEYDNNIIREAVSRETI---RGGQIFYLYNKVETIQKKKEI 825 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + + R IAI HG+MS+ + + VM FK+ +L+ TT+IE GID+ + Sbjct: 826 LQELFPRL---------RIAIAHGQMSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPN 876 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED- 616 A+ +IIE+A + GLAQLHQLRGRVGR + +L ++K++ RL + NTE Sbjct: 877 ANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNEASITKDALKRLEAISNTESL 936 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GEILG +QSG Sbjct: 937 GGGFTLANHDLEIRGAGEILGEEQSG 962 >gi|330808512|ref|YP_004352974.1| transcription-repair coupling factor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376620|gb|AEA67970.1| Transcription-repair coupling factor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 1149 Score = 236 bits (602), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 146/380 (38%), Positives = 212/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q++ I+ + DM M R++ GDVG GKT VA+ A AV G Q I+ Sbjct: 598 GFPFEETVDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAIL 657 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A+ +A G+ I+IGTH L Q Sbjct: 658 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSTKEVNAAVADLAEGKIDIVIGTHKLLQ 717 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D +++ L LVI+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 718 DDVKFKSLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 777 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R ++T ++ N+ V E L L G + Y++ ++ EK ++ +V Sbjct: 778 IATPPARRLSVRTFVMEQNK-STVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 836 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + I I HG+M + + E VM F + +LIA+T+IE GIDV A+ III Sbjct: 837 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 887 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL P ++ ++ RL + NT+D GF++ Sbjct: 888 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVL 947 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 948 ATNDLEIRGAGELLGDGQSG 967 >gi|261253317|ref|ZP_05945890.1| transcription-repair coupling factor [Vibrio orientalis CIP 102891] gi|260936708|gb|EEX92697.1| transcription-repair coupling factor [Vibrio orientalis CIP 102891] Length = 1153 Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 215/382 (56%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI ++ DM Q M R++ GDVG GKT VA+ A A + G Q ++ Sbjct: 599 GFPFEETDDQSMAINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ ++ L+ I G+ +++GTH L Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKTAKEQKLVLQDIEEGKVDLVVGTHKLLS 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 719 NDIKFKDLGLLIVDEEHRFGVRQKEKMKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503 I PA R IKT + + D+ + R V+ + G + Y++ Q+E EK ++ + Sbjct: 779 IATPPARRLAIKTF---VRQSDDAVVREAVLREIMRGGQVYFLHNQVETIEKVAADLEKL 835 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 V + + + HG+M + + E +M+ F + LL+ TT+IE GIDV A+ I Sbjct: 836 VPE---------ARVTVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTI 886 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GF 618 I++ A++ GLAQLHQLRGRVGR + LL HP ++K++ RL + + ED GF Sbjct: 887 IMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGF 946 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG +QSG Sbjct: 947 TLATHDLEIRGAGELLGDEQSG 968 >gi|25084218|gb|AAN72199.1| putative helicase [Arabidopsis thaliana] Length = 822 Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 143/381 (37%), Positives = 222/381 (58%), Gaps = 17/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 P++ T Q+ A D+ +D++++ M R++ GDVG GKT VAL A+ V G QA++ Sbjct: 264 QFPYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSTGKQAMV 323 Query: 327 MAPIGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +AP +LA+QHY+ I ++++ I V +++ +A + + LE I G +II+GTH+L Sbjct: 324 LAPTIVLAKQHYDVISERFSLYPHIKVGLLSRFQTKAEKEEYLEMIKTGHLNIIVGTHSL 383 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445 + Y L L++VDE+ RFGV+Q+ K+ T+ VL ++ATPIPRTL L G D Sbjct: 384 LGSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDA 443 Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 S I+ P R PIKT + R ++VIE +K L G + +++ P+I + + E Sbjct: 444 SLISTPPPERIPIKTHLSSF-RKEKVIEAIKNELDRGGQVFYVLPRI--------KGLEE 494 Query: 506 RFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L E F IA+ HG+ E M+ F G K+LI T ++E G+D+ +A+ II Sbjct: 495 VMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTII 554 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFL 619 I++ + FGLAQL+QLRGRVGR ++ + L Y LS + RLS L+ + GF Sbjct: 555 IQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRELGQGFQ 614 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +AE+D+ R G I G +Q+G Sbjct: 615 LAEKDMGIRGFGTIFGEQQTG 635 >gi|330967943|gb|EGH68203.1| transcription-repair coupling factor [Pseudomonas syringae pv. actinidiae str. M302091] Length = 1150 Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 146/380 (38%), Positives = 211/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q++ I+ + DM M R++ GDVG GKT VA+ A AV G Q I+ Sbjct: 599 GFPFEETPDQQTTIEAVRADMLAPRPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A+ +A G+ I+IGTH L Q Sbjct: 659 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVANLAEGKIDIVIGTHKLLQ 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D ++ L LVI+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 719 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R ++T ++ N+ + E L L G + Y++ ++ EK ++ +V Sbjct: 779 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 837 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + I I HG+M + D E VM F + +LIA+T+IE GIDV A+ III Sbjct: 838 E---------ARIGIGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 888 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL P ++ ++ RL + NT+D GF++ Sbjct: 889 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITSDAEKRLEAIANTQDLGAGFVL 948 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 949 ATNDLEIRGAGELLGDGQSG 968 >gi|330878592|gb|EGH12741.1| transcription-repair coupling factor [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 1150 Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 146/380 (38%), Positives = 211/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q++ I+ + DM M R++ GDVG GKT VA+ A AV G Q I+ Sbjct: 599 GFPFEETPDQQTTIEAVRADMLAPRPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A+ +A G+ I+IGTH L Q Sbjct: 659 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVANLAEGKIDIVIGTHKLLQ 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D ++ L LVI+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 719 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R ++T ++ N+ + E L L G + Y++ ++ EK ++ +V Sbjct: 779 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 837 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + I I HG+M + D E VM F + +LIA+T+IE GIDV A+ III Sbjct: 838 E---------ARIGIGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 888 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL P ++ ++ RL + NT+D GF++ Sbjct: 889 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITSDAEKRLEAIANTQDLGAGFVL 948 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 949 ATNDLEIRGAGELLGDGQSG 968 >gi|296875514|ref|ZP_06899586.1| transcription-repair coupling factor [Streptococcus parasanguinis ATCC 15912] gi|296433438|gb|EFH19213.1| transcription-repair coupling factor [Streptococcus parasanguinis ATCC 15912] Length = 1167 Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 147/411 (35%), Positives = 230/411 (55%), Gaps = 27/411 (6%) Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 ++ P+ T Q +I++I +DM M R+L GDVG GKT VA+ A AV Q + Sbjct: 606 QDFPYIETDDQLRSIEEIKKDMESNRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAV 665 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 + P +LAQQHY K+ ++ + V +++ +A +++ LE++ G+ IIIGTH L Sbjct: 666 LVPTTVLAQQHYANFKERFESFAVEVAVLSRFQSKAEQKETLEKLKKGRVDIIIGTHRLL 725 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 + + L L+++DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S Sbjct: 726 SKDVVFSDLGLIVIDEEQRFGVKHKETLKELKKKVDVLTLTATPIPRTLHMSMLGIRDLS 785 Query: 447 KITEKPAGRKPIKTVIIPINRI---DEVIERLKVVLSEGKKAYWICPQIE--EKKESNFR 501 I P R P++T ++ N D V+ + G +AY++ +++ E+K S + Sbjct: 786 VIETPPTNRYPVQTFVLETNPTIIRDAVLRE----MDRGGQAYYLYNKVDTIEQKVSELK 841 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ +SI +HG+MS++ E+ + F NG +L+ TT+IE G+D+ +A+ Sbjct: 842 ELIPE---------ASIGFVHGQMSEVRLENTLLDFINGEYDVLVTTTIIETGVDIPNAN 892 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--D 616 + IENA+H GL+ L+QLRGRVGR I+ L+Y P L++ S RL +K TE Sbjct: 893 TLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKSLTEVSEKRLEAIKGFTELGS 952 Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKH 665 GF IA DL R G ILG QSG + E++ LLE IA+K + Sbjct: 953 GFKIAMRDLSIRGAGNILGASQSGFIDSV--GFEMYSQLLEEAIAKKQGQE 1001 >gi|13877639|gb|AAK43897.1|AF370520_1 putative helicase [Arabidopsis thaliana] Length = 823 Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 143/381 (37%), Positives = 222/381 (58%), Gaps = 17/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 P++ T Q+ A D+ +D++++ M R++ GDVG GKT VAL A+ V G QA++ Sbjct: 265 QFPYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSTGKQAMV 324 Query: 327 MAPIGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +AP +LA+QHY+ I ++++ I V +++ +A + + LE I G +II+GTH+L Sbjct: 325 LAPTIVLAKQHYDVISERFSLYPHIKVGLLSRFQTKAEKEEYLEMIKTGHLNIIVGTHSL 384 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445 + Y L L++VDE+ RFGV+Q+ K+ T+ VL ++ATPIPRTL L G D Sbjct: 385 LGSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDA 444 Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 S I+ P R PIKT + R ++VIE +K L G + +++ P+I + + E Sbjct: 445 SLISTPPPERIPIKTHLSSF-RKEKVIEAIKNELDRGGQVFYVLPRI--------KGLEE 495 Query: 506 RFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L E F IA+ HG+ E M+ F G K+LI T ++E G+D+ +A+ II Sbjct: 496 VMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTII 555 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFL 619 I++ + FGLAQL+QLRGRVGR ++ + L Y LS + RLS L+ + GF Sbjct: 556 IQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRELGQGFQ 615 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +AE+D+ R G I G +Q+G Sbjct: 616 LAEKDMGIRGFGTIFGEQQTG 636 >gi|188491808|ref|ZP_02999078.1| transcription-repair coupling factor [Escherichia coli 53638] gi|188487007|gb|EDU62110.1| transcription-repair coupling factor [Escherichia coli 53638] Length = 1148 Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQCDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|315634772|ref|ZP_07890054.1| transcription-repair coupling factor [Aggregatibacter segnis ATCC 33393] gi|315476324|gb|EFU67074.1| transcription-repair coupling factor [Aggregatibacter segnis ATCC 33393] Length = 1149 Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 146/409 (35%), Positives = 233/409 (56%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + + G + + Q+ PF T Q AI ++ DM+ M R++ Sbjct: 570 LLDVYAQREAQKGFAFQYDREEFQQFTATFPFEETHDQLMAINAVISDMTLPKAMDRLVC 629 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQH++ K N + VE+++ Sbjct: 630 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHFDNFKDRFANLPVNVEMLSRFK 689 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +++ ++ +A G+ I+IGTH + Q +Q++ L L+I+DE+HRFGV+Q+ K+ Q Sbjct: 690 TAKEQKQVIQDLADGKVDILIGTHKIIQGDVQFHDLGLLIIDEEHRFGVRQKEKMKQLRA 749 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I+ PA R IKT + + DE++ R + +L Sbjct: 750 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLTIKTF---VRQTDELVIR-EAIL 805 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ + ++ + E+ +L + + + HG+M + + E VM Sbjct: 806 REILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVIVGHGQMRERELERVMSD 858 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ +T+IE GIDV A+ IIIE A++FGLAQLHQLRGRVGR + LL Sbjct: 859 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADNFGLAQLHQLRGRVGRSHHQAYAYLLT 918 Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 PP ++K++ RL L++ ++ GF++A DL+ R GE+LG +QSG Sbjct: 919 PPPKLMTKDAKKRLEALESLDNLGAGFILATHDLEIRGAGELLGNEQSG 967 >gi|331657177|ref|ZP_08358139.1| transcription-repair coupling factor [Escherichia coli TA206] gi|331055425|gb|EGI27434.1| transcription-repair coupling factor [Escherichia coli TA206] Length = 736 Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 179 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 238 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 239 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 298 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 299 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 358 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 359 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 409 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 410 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 467 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 468 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 527 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 528 GAGFALATHDLEIRGAGELLGEEQSG 553 >gi|191639457|ref|YP_001988623.1| Transcription-repair coupling factor (TRCF) [Lactobacillus casei BL23] gi|190713759|emb|CAQ67765.1| Transcription-repair coupling factor (TRCF) [Lactobacillus casei BL23] gi|205270976|emb|CAP07849.1| transcriptional-repair coupling factor [Lactobacillus casei BL23] gi|327383550|gb|AEA55026.1| Transcription-repair coupling factor [Lactobacillus casei LC2W] gi|327386742|gb|AEA58216.1| Transcription-repair coupling factor [Lactobacillus casei BD-II] Length = 1174 Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 148/431 (34%), Positives = 239/431 (55%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ A E +A ++ L +++ +K G + + K P+ T Q Sbjct: 567 EWQKTKRKVAARIEDIADELIDLYAKREAEK--GFAFGPDDDLQHKFEAEFPYPETPDQL 624 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + K+I DM + M R+L GDVG GKT VAL A A++ G QA I+ P ILAQQH+ Sbjct: 625 RSAKEIKHDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYGKQAAILVPTTILAQQHF 684 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + +K+ + I V +++ ++ ++ + +G I++GTH L + + L L+ Sbjct: 685 DTMKERFADFPIKVGLLSRFQTAHQNKETIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLL 744 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 ++DE+ RFGV+ + ++ Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 745 VIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPI 804 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515 +T ++ N I E IER + G + +++ ++E+ +ER S E Sbjct: 805 QTFVMEQNPGVIREAIER---EMERGGQVFYLHNRVED---------MERTVSQLEELVP 852 Query: 516 -SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 +S+ HG+M++ E+V+ F +G +L+ TT+IE G+D+ +A+ +IIENA+H+GL+ Sbjct: 853 DASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLS 912 Query: 575 QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 QL+QLRGR+GR ++ +Y P L++ + RL +KN TE GF IA DL R Sbjct: 913 QLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKNFTELGSGFKIAMRDLSIRG 972 Query: 630 EGEILGIKQSG 640 G +LG +Q G Sbjct: 973 AGNLLGKQQHG 983 >gi|15801231|ref|NP_287248.1| transcription-repair coupling factor [Escherichia coli O157:H7 EDL933] gi|12514664|gb|AAG55860.1|AE005321_3 transcription-repair coupling factor; mutation frequency decline [Escherichia coli O157:H7 str. EDL933] Length = 1148 Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 147/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMXQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+++ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|322390530|ref|ZP_08064048.1| transcription-repair coupling factor [Streptococcus parasanguinis ATCC 903] gi|321142804|gb|EFX38264.1| transcription-repair coupling factor [Streptococcus parasanguinis ATCC 903] Length = 1164 Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 147/411 (35%), Positives = 230/411 (55%), Gaps = 27/411 (6%) Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 ++ P+ T Q +I++I +DM M R+L GDVG GKT VA+ A AV Q + Sbjct: 606 QDFPYIETDDQLRSIEEIKKDMESNRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAV 665 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 + P +LAQQHY K+ ++ + V +++ +A +++ LE++ G+ IIIGTH L Sbjct: 666 LVPTTVLAQQHYANFKERFESFAVEVAVLSRFQSKAEQKETLEKLKKGRVDIIIGTHRLL 725 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 + + L L+++DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S Sbjct: 726 SKDVVFSDLGLIVIDEEQRFGVKHKETLKELKKKVDVLTLTATPIPRTLHMSMLGIRDLS 785 Query: 447 KITEKPAGRKPIKTVIIPINRI---DEVIERLKVVLSEGKKAYWICPQIE--EKKESNFR 501 I P R P++T ++ N D V+ + G +AY++ +++ E+K S + Sbjct: 786 VIETPPTNRYPVQTFVLETNPTIIRDAVLRE----MDRGGQAYYLYNKVDTIEQKVSELK 841 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ +SI +HG+MS++ E+ + F NG +L+ TT+IE G+D+ +A+ Sbjct: 842 ELIPE---------ASIGFVHGQMSEVRLENTLLDFINGEYDVLVTTTIIETGVDIPNAN 892 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--D 616 + IENA+H GL+ L+QLRGRVGR I+ L+Y P L++ S RL +K TE Sbjct: 893 TLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKSLTEVSEKRLEAIKGFTELGS 952 Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKH 665 GF IA DL R G ILG QSG + E++ LLE IA+K + Sbjct: 953 GFKIAMRDLSIRGAGNILGASQSGFIDSV--GFEMYSQLLEEAIAKKQGQE 1001 >gi|213967358|ref|ZP_03395506.1| transcription-repair coupling factor [Pseudomonas syringae pv. tomato T1] gi|301381676|ref|ZP_07230094.1| transcription-repair coupling factor [Pseudomonas syringae pv. tomato Max13] gi|302058434|ref|ZP_07249975.1| transcription-repair coupling factor [Pseudomonas syringae pv. tomato K40] gi|302131161|ref|ZP_07257151.1| transcription-repair coupling factor [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927659|gb|EEB61206.1| transcription-repair coupling factor [Pseudomonas syringae pv. tomato T1] gi|331019538|gb|EGH99594.1| transcription-repair coupling factor [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 1150 Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 146/380 (38%), Positives = 211/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q++ I+ + DM M R++ GDVG GKT VA+ A AV G Q I+ Sbjct: 599 GFPFEETPDQQTTIEAVRADMLAPRPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A+ +A G+ I+IGTH L Q Sbjct: 659 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVANLAEGKIDIVIGTHKLLQ 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D ++ L LVI+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 719 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R ++T ++ N+ + E L L G + Y++ ++ EK ++ +V Sbjct: 779 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 837 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + I I HG+M + D E VM F + +LIA+T+IE GIDV A+ III Sbjct: 838 E---------ARIGIGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 888 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL P ++ ++ RL + NT+D GF++ Sbjct: 889 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITSDAEKRLEAIANTQDLGAGFVL 948 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 949 ATNDLEIRGAGELLGDGQSG 968 >gi|333008322|gb|EGK27796.1| transcription-repair coupling factor [Shigella flexneri K-272] gi|333019810|gb|EGK39082.1| transcription-repair coupling factor [Shigella flexneri K-227] Length = 1148 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 214/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVLHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|28869305|ref|NP_791924.1| transcription-repair coupling factor [Pseudomonas syringae pv. tomato str. DC3000] gi|28852546|gb|AAO55619.1| transcription-repair coupling factor [Pseudomonas syringae pv. tomato str. DC3000] Length = 1150 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 146/380 (38%), Positives = 211/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q++ I+ + DM M R++ GDVG GKT VA+ A AV G Q I+ Sbjct: 599 GFPFEETPDQQTTIEAVRADMLAPRPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A+ +A G+ I+IGTH L Q Sbjct: 659 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVANLAEGKIDIVIGTHKLLQ 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D ++ L LVI+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 719 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R ++T ++ N+ + E L L G + Y++ ++ EK ++ +V Sbjct: 779 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 837 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + I I HG+M + D E VM F + +LIA+T+IE GIDV A+ III Sbjct: 838 E---------ARIGIGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 888 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL P ++ ++ RL + NT+D GF++ Sbjct: 889 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITSDAEKRLEAIANTQDLGAGFVL 948 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 949 ATNDLEIRGAGELLGDGQSG 968 >gi|171911105|ref|ZP_02926575.1| ATP-dependent DNA helicase RecG [Verrucomicrobium spinosum DSM 4136] Length = 903 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 127/299 (42%), Positives = 184/299 (61%), Gaps = 4/299 (1%) Query: 378 IIIGTHALF--QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435 I+IGTHAL + + +L LV++DEQH+FGV QR +L + AP VL+MTATPIPRTL Sbjct: 583 IVIGTHALLYERSAGNLPRLGLVVIDEQHKFGVAQRARLIAQGEAPDVLVMTATPIPRTL 642 Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495 LT GD+D+S I ++P R I T + + +++EV + + L EG++ Y + P IEE Sbjct: 643 TLTLYGDLDVSTIDQRPKERGKIITAVREVTKVEEVTKFVLTRLEEGRQCYIVYPLIEES 702 Query: 496 KESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554 ++ + + + + ++HGRM KE+VM F+ G+ K+L++TTVIEVG Sbjct: 703 EKLDAGAATTGLEEWTKRLAPHATGLLHGRMDTEAKEAVMRQFREGSVKVLVSTTVIEVG 762 Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614 +DV +A+++II ++ FGLAQLHQLRGR+GRG S I L+ P K + RL +L+ T Sbjct: 763 VDVPNATVMIIHDSGRFGLAQLHQLRGRIGRGAHTSYAI-LFVPKGDKEAMARLKLLEET 821 Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DGF IAEEDL +R G++LG QSG L+ AR+ A+ L DP+L Sbjct: 822 TDGFKIAEEDLARRGPGDVLGSAQSGQSPLRFGSLLADTRLVTTARRLAERTLKGDPEL 880 Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 89/269 (33%), Positives = 139/269 (51%), Gaps = 16/269 (5%) Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEA 158 ++TL +F L+ V ++ V GKIK++K+R++M HP Y I D + I A Sbjct: 101 QLTLRWF--GMVYLQKVLAVDMELMVYGKIKEIKDRLLMDHPEYEILRGDDDDDEAGIHA 158 Query: 159 -----VYSLPTGLSVDLFKKIIVEALSRLPV--LPEWIEKDLLQKKSFPSI--AEAFNII 209 VY L GL ++ + + LP LP+ + + F + A A + Sbjct: 159 SRIVPVYRLRGGLKQKPLRRTTWQVMEHLPAVALPDILPRPK-AGGDFAGMTRATALRTL 217 Query: 210 HNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269 H+P + F+ + ++ LA +E Q+ + + QFK G EG++ L + Sbjct: 218 HHP---EGFDELTKSQRYLALEEFYLMQLRAVRRKLQFKHHGGTAQRAEGRLLTAFLETL 274 Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T +Q ++++IL DM+ M R+L GDVGSGKT+VAL AM AVEAG Q +MAP Sbjct: 275 PFQMTGAQSRSLEEILADMALPQPMNRLLHGDVGSGKTVVALAAMLMAVEAGRQGALMAP 334 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGN 358 ILA+QHYE +++ + I V + T + Sbjct: 335 TQILAEQHYENARRWLEPLGIRVALRTAD 363 >gi|253989203|ref|YP_003040559.1| transcription-repair coupling factor [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780653|emb|CAQ83815.1| transcription-repair coupling factor (trcf) [Photorhabdus asymbiotica] Length = 1148 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 146/386 (37%), Positives = 221/386 (57%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q ++ PF T QE AI +L DM Q M R++ GDVG GKT VA+ + A++ Sbjct: 590 QLFCQSFPFETTPDQEQAINAVLDDMCQPIAMDRLVCGDVGFGKTEVAMRSAFLAIQNNK 649 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQH++ + N + +E+I+ +++ +E A G+ IIIGT Sbjct: 650 QVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMISRFRSAKEQQQVVEMAAVGKVDIIIGT 709 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q ++++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + Sbjct: 710 HKLLQSNLRWKDLGLLIVDEEHRFGVRHKEQIKAMRADVDILTLTATPIPRTLNMAMSSM 769 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I+ PA R +KT + D ++ R + +L E G + Y++ +E +++ Sbjct: 770 RDLSIISTPPARRLAVKTF---VREYDSLVVR-EAMLREILRGGQVYYLYNDVENIEKAK 825 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 R +E+ + IAI HG+M + D E VM F + +LI TT+IE GID+ Sbjct: 826 LR--LEKLVP-----EARIAIGHGQMRERDLERVMTDFHHQRFNVLICTTIIETGIDIPS 878 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ +++ RL + + ED Sbjct: 879 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTADAHKRLEAIASLEDL 938 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 939 GAGFALATHDLEIRGAGELLGEEQSG 964 >gi|110805128|ref|YP_688648.1| transcription-repair coupling factor [Shigella flexneri 5 str. 8401] gi|110614676|gb|ABF03343.1| transcription-repair coupling factor [Shigella flexneri 5 str. 8401] Length = 1169 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 147/386 (38%), Positives = 214/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 612 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 671 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 672 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 731 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+I DE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 732 HKLLQSDVKFKDLGLLIADEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 791 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 792 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 842 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 843 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 900 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 901 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 960 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 961 GAGFALATHDLEIRGAGELLGEEQSG 986 >gi|219872109|ref|YP_002476484.1| transcription-repair coupling factor [Haemophilus parasuis SH0165] gi|219692313|gb|ACL33536.1| transcription-repair coupling factor [Haemophilus parasuis SH0165] Length = 1217 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 158/426 (37%), Positives = 236/426 (55%), Gaps = 23/426 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T+ Q++AI ++ DM M R++ GDVG GKT VA+ A A Q I+ Sbjct: 670 TFPFEETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAAMNHKQVAIL 729 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 AP +LAQQH+E K N I VE+++ +++ L ++A G+ I++GTH L Q Sbjct: 730 APTTLLAQQHFENFKDRFANYPINVEVLSRFKTAKAQKEILAKVADGKVDILVGTHKLLQ 789 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + +Q+ L L+++DE+HRFGV+Q+ ++ Q +L +TATPIPRTL + G D+S Sbjct: 790 EDVQFKDLGLLVIDEEHRFGVRQKERIKQLRANIDILTLTATPIPRTLNMALNGMRDLSI 849 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVV 504 I PA R IKT + + D VI+ + +L E G + Y++ + + + Sbjct: 850 IASPPARRLSIKTFVRQSD--DTVIK--EAILREILRGGQVYYLHNDV-----ATIENTA 900 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 ++ L + I I HG+M + + E VM F + LL+ +T+IE GIDV A+ II Sbjct: 901 QQLAELVPE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTII 958 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL---SVLKNTEDGFL 619 IE A+ FGLAQLHQLRGRVGR + +L PP L+K++ RL S + N GF+ Sbjct: 959 IERADKFGLAQLHQLRGRVGRSHHQAYAYMLTPPPKTLTKDAQQRLEAMSTIDNLGAGFV 1018 Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679 +A DL+ R GE+LG +QSG + L L+ LLE A K + ++P L + Q Sbjct: 1019 LATHDLEIRGAGELLGSEQSGQIESLGF--SLYMELLENAVKALQE--GREPTLDEITQQ 1074 Query: 680 SIRILL 685 + I L Sbjct: 1075 QVDIEL 1080 >gi|170768251|ref|ZP_02902704.1| transcription-repair coupling factor [Escherichia albertii TW07627] gi|170123017|gb|EDS91948.1| transcription-repair coupling factor [Escherichia albertii TW07627] Length = 1148 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 214/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILTEVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A D + R GE+LG +QSG Sbjct: 940 GAGFALATHDQEIRGAGELLGEEQSG 965 >gi|212712824|ref|ZP_03320952.1| hypothetical protein PROVALCAL_03921 [Providencia alcalifaciens DSM 30120] gi|212684516|gb|EEB44044.1| hypothetical protein PROVALCAL_03921 [Providencia alcalifaciens DSM 30120] Length = 1148 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 148/411 (36%), Positives = 224/411 (54%), Gaps = 23/411 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + + Q+ + PF T QE AI +L DM Q M R++ Sbjct: 567 LLDIYAQRAAKAGFAFKHDKEQYQEFCQGFPFETTPDQEMAINAVLSDMCQPLAMDRLVC 626 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A A+ Q ++ P +LAQQHY+ + N + +E+++ Sbjct: 627 GDVGFGKTEVAMRAAFLAINNNKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFK 686 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +++ + A G+ I+IGTH L Q IQ+ L L++VDE+HRFGV+ + ++ Sbjct: 687 TAKEQQQIIAEAAEGKVDILIGTHKLLQSDIQWKDLGLLVVDEEHRFGVRHKERIKAMRA 746 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I PA R +KT + + D+++ R + +L Sbjct: 747 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VRQYDDLVVR-EAIL 802 Query: 480 SE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534 E G + Y++ +E EK ++ ++V + + HG+M + + E VM Sbjct: 803 RETLRGGQVYYLYNDVENIEKAKARLETLVPE---------ARFVVGHGQMRERELERVM 853 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F + +LI TT+IE GID+ A+ IIIE A+HFGLAQLHQLRGRVGR + L Sbjct: 854 TDFHHQRFNVLICTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYL 913 Query: 595 LY-HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 L HP ++ ++ RL + + ED GF +A DL+ R GE+LG QSG Sbjct: 914 LTPHPKAMTTDAQKRLEAISSLEDLGAGFALATHDLEIRGAGELLGEDQSG 964 >gi|89256268|ref|YP_513630.1| transcription-repair coupling factor [Francisella tularensis subsp. holarctica LVS] gi|115314722|ref|YP_763445.1| transcription-repair coupling factor TRCF [Francisella tularensis subsp. holarctica OSU18] gi|156502334|ref|YP_001428399.1| transcription-repair coupling factor [Francisella tularensis subsp. holarctica FTNF002-00] gi|254367605|ref|ZP_04983626.1| transcription-repair coupling factor, ATP-dependent [Francisella tularensis subsp. holarctica 257] gi|89144099|emb|CAJ79356.1| Transcription-repair coupling factor,ATP-dependent [Francisella tularensis subsp. holarctica LVS] gi|115129621|gb|ABI82808.1| transcription-repair coupling factor TRCF [Francisella tularensis subsp. holarctica OSU18] gi|134253416|gb|EBA52510.1| transcription-repair coupling factor, ATP-dependent [Francisella tularensis subsp. holarctica 257] gi|156252937|gb|ABU61443.1| transcription-repair coupling factor [Francisella tularensis subsp. holarctica FTNF002-00] Length = 1141 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 145/386 (37%), Positives = 211/386 (54%), Gaps = 21/386 (5%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 + + P+ T Q SAI D+ +DM M R++ GDVG GKT + + A A + Q Sbjct: 589 RFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEITMRAAFLATQNQKQ 648 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 I+ P ILAQQHY K NT I +E+IT + +++ E + G IIIGTH Sbjct: 649 VAILVPTTILAQQHYNSFKDRFTNTAINIEVITRSKTSKAQQQLFEDLKKGTVDIIIGTH 708 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443 L I + L L+I+DE+HRFGV Q+ KL +L M+ATPIPR+L + Sbjct: 709 KLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALR 768 Query: 444 DISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESN 499 D+S I PA R +KT + N I E + R + G + +++ ++E +KK+ Sbjct: 769 DLSIIASPPAKRLSVKTFVKEYDNNIIREAVSRETI---RGGQIFYLYNKVETIQKKKEI 825 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + + R IAI HG+MS+ + + VM FK+ +L+ TT+IE GID+ + Sbjct: 826 LQELFPRL---------RIAIAHGQMSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPN 876 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED- 616 A+ +IIE+A + GLAQLHQLRGRVGR + +L ++K++ RL + NTE Sbjct: 877 ANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNKASITKDALKRLEAISNTESL 936 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GEILG +QSG Sbjct: 937 GGGFTLANHDLEIRGAGEILGEEQSG 962 >gi|37526705|ref|NP_930049.1| transcription-repair coupling factor [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786137|emb|CAE15189.1| transcription-repair coupling factor (TRCF) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 1148 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 148/387 (38%), Positives = 218/387 (56%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q ++ PF T QE AI +L DM Q M R++ GDVG GKT VA+ + AV Sbjct: 590 QLFCQSFPFETTPDQEQAINAVLNDMCQPIAMDRLICGDVGFGKTEVAMRSAFLAVHNDK 649 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQH++ + N + +E+I+ +++ +E A G+ IIIGT Sbjct: 650 QVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMISRFRSAKEQQQIVEMAAEGKVDIIIGT 709 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + Sbjct: 710 HKLLQSDLRWKDLGLLIVDEEHRFGVRHKEQIKAMRADVDILTLTATPIPRTLNMAMSSM 769 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I+ PA R +KT + D ++ R + +L E G + Y++ +E +++ Sbjct: 770 RDLSIISTPPARRLAVKTF---VREYDSLLVR-EAILREVLRGGQVYYLYNDVENIEKAK 825 Query: 500 FRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 R L E + IAI HG+M + D E VM F + +LI TT+IE GID+ Sbjct: 826 LR--------LEELVPEARIAIGHGQMRERDLERVMTDFHHQRFNVLICTTIIETGIDIP 877 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ +++ RL + + ED Sbjct: 878 SANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTTDAHKRLEAIASLED 937 Query: 617 ---GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 938 LGAGFALATHDLEIRGAGELLGEEQSG 964 >gi|323496023|ref|ZP_08101086.1| transcription-repair coupling factor [Vibrio sinaloensis DSM 21326] gi|323318914|gb|EGA71862.1| transcription-repair coupling factor [Vibrio sinaloensis DSM 21326] Length = 1154 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 143/383 (37%), Positives = 218/383 (56%), Gaps = 23/383 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q+ AI ++ DM Q M R++ GDVG GKT VA+ A A + G Q ++ Sbjct: 599 GFPFEETDDQKIAINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFLATDNGKQVAVL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ +++ L+ I G+ +++GTH L Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKTAKEQKQVLQDIEDGKVDLVVGTHKLLS 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 719 NDIKFKDLGLLIVDEEHRFGVRQKEKMKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502 I PA R IKT + + D+ + R + VL E G + Y++ Q++ EK ++ Sbjct: 779 IATPPARRLAIKTF---VRQSDDAVVR-EAVLREIMRGGQVYFLHNQVDTIEKVAADLEK 834 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 ++ + I + HG+M + + E +M+ F + LL+ TT+IE GIDV A+ Sbjct: 835 LIPE---------ARITVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANT 885 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---G 617 II++ A++ GLAQLHQLRGRVGR + LL HP ++K++ RL + + ED G Sbjct: 886 IIMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAG 945 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F +A DL+ R GE+LG +QSG Sbjct: 946 FTLATHDLEIRGAGELLGDEQSG 968 >gi|315660330|ref|ZP_07913183.1| transcription-repair coupling factor [Staphylococcus lugdunensis M23590] gi|315494619|gb|EFU82961.1| transcription-repair coupling factor [Staphylococcus lugdunensis M23590] Length = 1173 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 159/446 (35%), Positives = 239/446 (53%), Gaps = 23/446 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + K+ + +G + Q + P+ T Q +I++I DM + M R+L Sbjct: 587 LIALYKEREMSVGYQFGEDTAEQQAFELDFPYELTPDQAKSIEEIKADMELQKPMDRLLC 646 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV G Q + P ILAQQHYE + + Q+ + +++++ Sbjct: 647 GDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPVEIQLVSRFR 706 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 RK E + G I++GTH L I+Y L L+IVDE+ RFGV+ + ++ T Sbjct: 707 TAKEVRKTKEGLKSGYVDIVVGTHKLLSKDIRYKDLGLLIVDEEQRFGVRHKERIKTLKT 766 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP--INRIDEVIERLKV 477 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N I E +ER Sbjct: 767 NVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALER--- 823 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDS 536 LS + +++ +++ S+ E+ L +SIA+ HG+M++ D E M S Sbjct: 824 ELSRDGQVFYLYNKVQ--------SIYEKREQLQMLMPEASIAVAHGQMTERDLEETMLS 875 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F NG +L+ TT+IE G+DV +A+ +IIE A+ FGL+QL+QLRGRVGR I L Sbjct: 876 FINGDYDILVTTTIIETGVDVPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFL- 934 Query: 597 HPP---LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 HP L++ + RL +K TE GF IA DL R G +LG +Q G + + Sbjct: 935 HPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSV--GFD 992 Query: 651 LHDSLLEIARKDAKHILTQDPDLTSV 676 L+ +LE A + + I + PD V Sbjct: 993 LYSQMLEEAVNEKRGITEETPDTPEV 1018 >gi|300716251|ref|YP_003741054.1| transcription-repair-coupling factor [Erwinia billingiae Eb661] gi|299062087|emb|CAX59203.1| Transcription-repair-coupling factor [Erwinia billingiae Eb661] Length = 1147 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 150/409 (36%), Positives = 223/409 (54%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + + G + + Q + PF T Q AI +L DM Q M R++ Sbjct: 568 LLDIYAQREAKSGFAFKHDREQYQLFCESFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 627 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AVE Q ++ P +LAQQHY+ + N + +E+++ Sbjct: 628 GDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFR 687 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + LE+ G+ I+IGTH L + I++ L L+IVDE+HRFGV+ + ++ Sbjct: 688 TAKEQTAILEQAREGKIDILIGTHKLLANEIKWRDLGLLIVDEEHRFGVRHKERIKAMRA 747 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I PA R +KT + D+++ R + +L Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREFDDLVVR-EAIL 803 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ +E N R + L + +AI HG+M + + E VM+ Sbjct: 804 REVLRGGQVYYLYNDVE-----NIEKAANRLSELVPE--ARVAIGHGQMRERELERVMND 856 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ TT+IE GID+ A+ IIIE A+HFGLAQLHQLRGRVGR + L+ Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLMT 916 Query: 597 -HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 HP ++ +++ RL L + ED GF +A DL+ R GE+LG QSG Sbjct: 917 PHPKAMTSDAHKRLEALASLEDLGAGFALATHDLEIRGAGELLGEGQSG 965 >gi|294636793|ref|ZP_06715130.1| transcription-repair coupling factor [Edwardsiella tarda ATCC 23685] gi|291089984|gb|EFE22545.1| transcription-repair coupling factor [Edwardsiella tarda ATCC 23685] Length = 847 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 147/386 (38%), Positives = 214/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T QE AI +L DM Q M R++ GDVG GKT VA+ A AV Sbjct: 291 QLFCQGFPFETTPDQEMAINAVLGDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVHNSK 350 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L A G+ I+IGT Sbjct: 351 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIELISRFRSAKEQAQVLADTAEGKVDILIGT 410 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q + + L L+IVDE+HRFGV+Q+ ++ +L +TATPIPRTL + G Sbjct: 411 HKLLQTDVLWKDLGLLIVDEEHRFGVRQKERIKALRADVDILTLTATPIPRTLNMAMSGM 470 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ ++ + Sbjct: 471 RDLSIIATPPARRMAVKTF---VREYDSLLVR-EAILRETLRGGQVYYLYNDVD-----S 521 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + +R +L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 522 IQKAADRLATLVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPS 579 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL PP ++ ++ RL + + ED Sbjct: 580 ANTIIIERADHFGLAQLHQLRGRVGRSYHQAYAYLLTPPPKAMTVDAQKRLEAIASLEDL 639 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 640 GAGFALATHDLEIRGAGELLGDDQSG 665 >gi|157150453|ref|YP_001451365.1| transcription-repair coupling factor [Streptococcus gordonii str. Challis substr. CH1] gi|157075247|gb|ABV09930.1| transcription-repair coupling factor [Streptococcus gordonii str. Challis substr. CH1] Length = 1167 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 151/409 (36%), Positives = 231/409 (56%), Gaps = 25/409 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T+ Q +I++I +DM K M R+L GDVG GKT VA+ A AV Q I+ Sbjct: 611 DFPYVETEDQLRSIQEIKKDMESKQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAIL 670 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY K+ + + V++++ +A + + LE + GQ IIIGTH L Sbjct: 671 VPTTVLAQQHYTNFKERFNDFAVNVDVLSRFRTKAEQSETLEALKKGQVDIIIGTHRLLS 730 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++ L L+++DE+ RFGV+ + KL + T VL +TATPIPRTL ++ LG D+S Sbjct: 731 QDVEFADLGLIVIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSV 790 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSV 503 I P R P++T ++ N I + I R + G + Y++ +++ E+K + + + Sbjct: 791 IETPPTNRYPVQTYVLESNPTIIRDAILR---EIDRGGQVYYLYNKVDTIEQKVAELKEL 847 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + +SI +HG+MS+I E+ + F NG +L+ TT+IE G+D+ +A+ + Sbjct: 848 IPE---------ASIGFVHGQMSEIRLENTLIDFINGEYDVLVTTTIIETGVDIPNANTL 898 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGF 618 IENA+H GL+ L+QLRGRVGR I+ +Y P L++ + RL +K TE GF Sbjct: 899 FIENADHMGLSTLYQLRGRVGRSNRIAYAYFMYRPDKTLTEVAEKRLEAIKGFTELGSGF 958 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKH 665 IA DL R G ILG QSG + E++ LLE IA+K K Sbjct: 959 KIAMRDLSIRGAGNILGASQSGFIDSV--GFEMYSQLLEEAIAKKQGKE 1005 >gi|110833889|ref|YP_692748.1| transcription-repair coupling factor [Alcanivorax borkumensis SK2] gi|110647000|emb|CAL16476.1| transcription-repair coupling factor [Alcanivorax borkumensis SK2] Length = 1159 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 141/381 (37%), Positives = 215/381 (56%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + PF T Q++AI ++ DM M R++ GDVG GKT VA+ A AVE Q ++ Sbjct: 602 SFPFEETPDQQAAIASVVADMQSSQPMDRLVCGDVGFGKTEVAMRAAFVAVENQTQVAVL 661 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHYE + + +E+++ + + L+R+ G+ I++GTH L Q Sbjct: 662 VPTTLLAQQHYESFTDRFADWPVNIEVLSRFRSAKEKTQVLQRLKEGKVDILVGTHQLLQ 721 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++ + L L+IVDE+HRFGV+ + +L Q +L +TATPIPRTL + G DIS Sbjct: 722 ETVSFDNLGLIIVDEEHRFGVRHKERLKQMRAECDILTLTATPIPRTLNMAMSGMRDISI 781 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504 I P R +KT + N D VI E L L G + Y++ I+ EK ++ R +V Sbjct: 782 IATPPQKRLSVKTFVQQHN--DTVIKEALLRELLRGGQVYYLHNDIDTMEKTAADIRKLV 839 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + + I HG+M + + E+VM F + +L++TT+IE GIDV A+ II Sbjct: 840 P---------DARVGIAHGQMRERELEAVMSDFYHRRFNVLVSTTIIETGIDVPSANTII 890 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFL 619 I+ A+ GLAQLHQLRGRVGR + L+ P ++K++ RL ++ D GF+ Sbjct: 891 IDRADKLGLAQLHQLRGRVGRSHHQAYAYLITPSPKVMTKDAIKRLEAIEQATDLGAGFM 950 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A +D++ R GE+LG +Q G Sbjct: 951 LASQDMEIRGAGELLGEEQHG 971 >gi|290953610|ref|ZP_06558231.1| transcription-repair coupling factor [Francisella tularensis subsp. holarctica URFT1] gi|295313111|ref|ZP_06803801.1| transcription-repair coupling factor [Francisella tularensis subsp. holarctica URFT1] Length = 1141 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 145/386 (37%), Positives = 211/386 (54%), Gaps = 21/386 (5%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 + + P+ T Q SAI D+ +DM M R++ GDVG GKT + + A A + Q Sbjct: 589 RFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEITMRAAFLATQNQKQ 648 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 I+ P ILAQQHY K NT I +E+IT + +++ E + G IIIGTH Sbjct: 649 VAILVPTTILAQQHYNSFKDRFTNTAINIEVITRSKTSKAQQQLFEDLKKGTVDIIIGTH 708 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443 L I + L L+I+DE+HRFGV Q+ KL +L M+ATPIPR+L + Sbjct: 709 KLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALR 768 Query: 444 DISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESN 499 D+S I PA R +KT + N I E + R + G + +++ ++E +KK+ Sbjct: 769 DLSIIASPPAKRLSVKTFVKEYDNNIIREAVSRETI---RGGQIFYLYNKVETIQKKKEI 825 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + + R IAI HG+MS+ + + VM FK+ +L+ TT+IE GID+ + Sbjct: 826 LQELFPRL---------RIAIAHGQMSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPN 876 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED- 616 A+ +IIE+A + GLAQLHQLRGRVGR + +L ++K++ RL + NTE Sbjct: 877 ANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNKASITKDALKRLEAISNTESL 936 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GEILG +QSG Sbjct: 937 GGGFTLANHDLEIRGAGEILGEEQSG 962 >gi|289551698|ref|YP_003472602.1| Transcription-repair coupling factor [Staphylococcus lugdunensis HKU09-01] gi|289181229|gb|ADC88474.1| Transcription-repair coupling factor [Staphylococcus lugdunensis HKU09-01] Length = 1173 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 159/446 (35%), Positives = 239/446 (53%), Gaps = 23/446 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + K+ + +G + Q + P+ T Q +I++I DM + M R+L Sbjct: 587 LIALYKEREMSVGYQFGEDTAEQQAFELDFPYELTPDQAKSIEEIKADMELQKPMDRLLC 646 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV G Q + P ILAQQHYE + + Q+ + +++++ Sbjct: 647 GDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPVEIQLVSRFR 706 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 RK E + G I++GTH L I+Y L L+IVDE+ RFGV+ + ++ T Sbjct: 707 TAKEVRKTKEGLKSGYVDIVVGTHKLLSKDIRYKDLGLLIVDEEQRFGVRHKERIKTLKT 766 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP--INRIDEVIERLKV 477 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N I E +ER Sbjct: 767 NVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALER--- 823 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDS 536 LS + +++ +++ S+ E+ L +SIA+ HG+M++ D E M S Sbjct: 824 ELSRDGQVFYLYNKVQ--------SIYEKREQLQMLMPEASIAVAHGQMTERDLEETMLS 875 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F NG +L+ TT+IE G+DV +A+ +IIE A+ FGL+QL+QLRGRVGR I L Sbjct: 876 FINGDYDILVTTTIIETGVDVPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFL- 934 Query: 597 HPP---LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 HP L++ + RL +K TE GF IA DL R G +LG +Q G + + Sbjct: 935 HPTNKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSV--GFD 992 Query: 651 LHDSLLEIARKDAKHILTQDPDLTSV 676 L+ +LE A + + I + PD V Sbjct: 993 LYSQMLEEAVNEKRGITEETPDTPEV 1018 >gi|92113691|ref|YP_573619.1| transcription-repair coupling factor [Chromohalobacter salexigens DSM 3043] gi|91796781|gb|ABE58920.1| transcription-repair coupling factor [Chromohalobacter salexigens DSM 3043] Length = 1150 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 143/380 (37%), Positives = 217/380 (57%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + PF T Q +AI+ ++ DM+ M R++ GDVG GKT VA+ A AVE+G Q V++ Sbjct: 597 SFPFEETPDQHAAIEAVIGDMTAARPMDRVVCGDVGFGKTEVAMRAAFLAVESGRQVVVL 656 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY+ + +T + +E+I+ ++ +LERI G+A I+IGTH L Sbjct: 657 VPTTLLAQQHYDNFRDRFADTAVQIELISRFTAGKGQQASLERITEGRADIVIGTHKLLS 716 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 S+ + L+I+DE+HRFGV Q+ KL +L +TATPIPRTL + G D+S Sbjct: 717 KSMSLPNMGLLIIDEEHRFGVSQKEKLKGLRAEIDILTLTATPIPRTLNMAMSGIRDLSI 776 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I PA R +KT + N + E + L+ +L G + Y++ +++ + Sbjct: 777 IATPPARRLSVKTFVQQRNEGVLKEAL--LREIL-RGGQVYFLHNEVK-----TIDATAA 828 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L + + I HG++ + + E VM F + +L+ +T+IE GIDV A+ III Sbjct: 829 KITELVP--DARVGIAHGQLPERELERVMSDFYHKRFNVLVCSTIIETGIDVPSANTIII 886 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL PP +++++ RL + ED GF + Sbjct: 887 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAMTRDALKRLEAIGQAEDLGAGFTL 946 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A D++ R GE+LG +QSG Sbjct: 947 ASHDMEIRGAGELLGDEQSG 966 >gi|153213092|ref|ZP_01948630.1| transcription-repair coupling factor [Vibrio cholerae 1587] gi|124116139|gb|EAY34959.1| transcription-repair coupling factor [Vibrio cholerae 1587] Length = 1155 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 147/383 (38%), Positives = 213/383 (55%), Gaps = 23/383 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI +L DM Q M R++ GDVG GKT VA+ A A + G Q ++ Sbjct: 601 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 660 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ +++ L+ +A G+ I++GTH L Sbjct: 661 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLS 720 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 721 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 780 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502 I PA R IKT + D VI + VL E G + Y++ Q+E +K ++ Sbjct: 781 IATPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEK 836 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 +V + I + HG+M + + E VM+ F + LL+ TT+IE GIDV A+ Sbjct: 837 LVPE---------ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 887 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617 II++ A+ GLAQLHQLRGRVGR + LL P ++K++ RL + + ED G Sbjct: 888 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPTPKAITKDAVKRLEAIASLEDLGAG 947 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F +A DL+ R GE+LG +QSG Sbjct: 948 FTLATHDLEIRGAGELLGEEQSG 970 >gi|320155796|ref|YP_004188175.1| transcription-repair coupling factor [Vibrio vulnificus MO6-24/O] gi|319931108|gb|ADV85972.1| transcription-repair coupling factor [Vibrio vulnificus MO6-24/O] Length = 1153 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 143/380 (37%), Positives = 212/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI +L DM Q M R++ GDVG GKT VA+ A A + Q ++ Sbjct: 599 GFPFEETDDQSMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNDKQVAVL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ +++ +E +A+G+ I++GTH L Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQIMEDVANGKVDILVGTHKLLS 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 719 SDLKFSDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVE 505 I PA R IKT + D+ + R ++ + G + Y++ Q+E V E Sbjct: 779 IATPPARRLAIKTF---VRESDDAVVREAILREIMRGGQVYFLHNQVE-----TIEKVAE 830 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 L + + I HG+M + + E VM+ F + LL+ TT+IE GIDV A+ II+ Sbjct: 831 DLTKLVPE--ARVTIAHGQMRERELERVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIM 888 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GFLI 620 + A++ GLAQLHQLRGRVGR + LL HP ++K++ RL + + ED GF + Sbjct: 889 DRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKSMTKDAIKRLDAIASLEDLGAGFTL 948 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG +QSG Sbjct: 949 ATHDLEIRGAGELLGDEQSG 968 >gi|153835235|ref|ZP_01987902.1| transcription-repair coupling factor [Vibrio harveyi HY01] gi|148868273|gb|EDL67407.1| transcription-repair coupling factor [Vibrio harveyi HY01] Length = 1153 Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 145/383 (37%), Positives = 215/383 (56%), Gaps = 23/383 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q +AI +L DM Q M R++ GDVG GKT VA+ A A + Q ++ Sbjct: 599 TFPFEETDDQSTAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ ++ L+ +A G+ I++GTH L Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLS 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 719 SDIKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502 I PA R IKT + R D V+ + VL E G + Y++ Q+E EK + + Sbjct: 779 IATPPARRLAIKTFV--RQREDSVVR--EAVLREIMRGGQVYFLHNQVETIEKTAEDLQK 834 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 ++ + + + HG+M + + E +M+ F + LL+ TT+IE GIDV A+ Sbjct: 835 LIPE---------ARVTVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANT 885 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---G 617 II++ A++ GLAQLHQLRGRVGR + LL HP ++K++ RL + + ED G Sbjct: 886 IIMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAITKDAIKRLDAIASLEDLGAG 945 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F +A DL+ R GE+LG +QSG Sbjct: 946 FTLATHDLEIRGAGELLGDEQSG 968 >gi|258625932|ref|ZP_05720803.1| transcription-repair coupling factor [Vibrio mimicus VM603] gi|258581797|gb|EEW06675.1| transcription-repair coupling factor [Vibrio mimicus VM603] Length = 872 Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 146/383 (38%), Positives = 213/383 (55%), Gaps = 23/383 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI +L DM Q M R++ GDVG GKT VA+ A A + G Q ++ Sbjct: 317 TFPFEETDDQAMAINAVLSDMCQPKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 376 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ +++ L+ +A G+ I++GTH L Sbjct: 377 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLS 436 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 437 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 496 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502 I PA R IKT + D VI + VL E G + Y++ Q+E +K ++ Sbjct: 497 IATPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEK 552 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 +V + + + HG+M + + E VM+ F + LL+ TT+IE GIDV A+ Sbjct: 553 LVPE---------ARVTVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 603 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617 II++ A+ GLAQLHQLRGRVGR + LL PP ++K++ L + + ED G Sbjct: 604 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKHLEAIASLEDLGAG 663 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F +A DL+ R GE+LG +QSG Sbjct: 664 FTLATHDLEIRGAGELLGEEQSG 686 >gi|183599469|ref|ZP_02960962.1| hypothetical protein PROSTU_02948 [Providencia stuartii ATCC 25827] gi|188021716|gb|EDU59756.1| hypothetical protein PROSTU_02948 [Providencia stuartii ATCC 25827] Length = 1148 Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 143/388 (36%), Positives = 216/388 (55%), Gaps = 23/388 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + PF T QE AI +L DM Q M R++ GDVG GKT VA+ A A+ Sbjct: 590 QEFCQGFPFETTPDQEQAINAVLSDMCQPIAMDRLVCGDVGFGKTEVAMRAAFLAINNNK 649 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQH++ + N + +E+++ +++ LE A G+ I+IGT Sbjct: 650 QVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFKTAKEQQQILEETAQGKVDILIGT 709 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q + ++ L L++VDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 710 HKLLQSDLVWHDLGLLVVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 769 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKE 497 D+S I PA R +KT + + D+++ R + +L E G + Y++ +E EK + Sbjct: 770 RDLSIIATPPARRLAVKTF---VRQYDDLVVR-EAILRETLRGGQVYYLYNDVENIEKAK 825 Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557 +V + + HG+M + + E VM F + +LI TT+IE GID+ Sbjct: 826 KRLEELVPE---------ARFVVGHGQMRERELERVMTDFHHQRFNVLICTTIIETGIDI 876 Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTE 615 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ +++ RL + + E Sbjct: 877 PTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTADAHKRLEAISSLE 936 Query: 616 D---GFLIAEEDLKQRKEGEILGIKQSG 640 D GF +A DL+ R GE+LG QSG Sbjct: 937 DLGAGFALATHDLEIRGAGELLGEDQSG 964 >gi|168467175|ref|ZP_02701017.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195630325|gb|EDX48951.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 1148 Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 214/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+++ + + L A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q ++ + L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKLHDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|157146181|ref|YP_001453500.1| transcription-repair coupling factor [Citrobacter koseri ATCC BAA-895] gi|157083386|gb|ABV13064.1| hypothetical protein CKO_01937 [Citrobacter koseri ATCC BAA-895] Length = 1148 Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 147/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQH++ + N + +E+++ + + LE++A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKLKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDNLVVR-EAILREVLRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + +R L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAADRLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEDQSG 965 >gi|187931883|ref|YP_001891868.1| transcription-repair coupling factor [Francisella tularensis subsp. mediasiatica FSC147] gi|187712792|gb|ACD31089.1| transcription-repair coupling factor [Francisella tularensis subsp. mediasiatica FSC147] Length = 1141 Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 145/386 (37%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 + + P+ T Q SAI D+ +DM M R++ GDVG GKT +A+ A A + Q Sbjct: 589 RFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQ 648 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 I+ P ILAQQHY K NT + +E+IT + +++ E + G IIIGTH Sbjct: 649 VAILVPTTILAQQHYNSFKDRFTNTAVNIEVITRSKTPKAQQQLFEDLKKGTIDIIIGTH 708 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443 L I + L L+I+DE+HRFGV Q+ KL +L M+ATPIPR+L + Sbjct: 709 KLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALR 768 Query: 444 DISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESN 499 D+S I PA R +KT + N I E + R + G + +++ ++E +KK+ Sbjct: 769 DLSIIASPPAKRLSVKTFVKEYDNNIIREAVSRETI---RGGQIFYLYNKVETIQKKKEI 825 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + + R IAI HG+MS+ + + VM FK+ +L+ TT+IE GID+ + Sbjct: 826 LQELFPRL---------RIAIAHGQMSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPN 876 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED- 616 A+ +IIE+A + GLAQLHQLRGRVGR + +L ++K++ RL + NTE Sbjct: 877 ANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNEASITKDALKRLEAISNTESL 936 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GEILG +QSG Sbjct: 937 GGGFTLANHDLEIRGAGEILGEEQSG 962 >gi|171778202|ref|ZP_02919431.1| hypothetical protein STRINF_00270 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283026|gb|EDT48450.1| hypothetical protein STRINF_00270 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 1169 Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 164/469 (34%), Positives = 255/469 (54%), Gaps = 33/469 (7%) Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266 N +++ R K + S E +A D+LL L R Q K G + + + ++ Sbjct: 558 NKLNDGRFQKTKQKVSKQVEDIA-DDLLK----LYAERSQLK---GFAFSPDDDLQKEFD 609 Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 + + T+ Q +IK+I DM ++ M R+L GDVG GKT VA+ A AV+ Q + Sbjct: 610 DDFAYVETEDQLRSIKEIKHDMEEEKPMDRLLVGDVGFGKTEVAMRAAFKAVKDHKQVAV 669 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 + P +LAQQH+ + +N + V++++ + + LE++ GQ IIIGTH L Sbjct: 670 LVPTTVLAQQHFTNFSERFENYPVAVDVLSRFQSKKEQTATLEKLKKGQVDIIIGTHRLL 729 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 +++ L L+I+DE+ RFGV+ + KL + T VL +TATPIPRTL ++ LG D+S Sbjct: 730 SKDVEFADLGLIIIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLS 789 Query: 447 KITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRS 502 I P R P++T ++ N I E I R + G + +++ +++ ++K S + Sbjct: 790 VIETPPTNRYPVQTYVLETNPGLIREAIIR---EIDRGGQVFYVYNRVDTIDQKVSELQE 846 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 +V +SI +HG+MS+I E+ + F G +L+ATT+IE G+D+ + + Sbjct: 847 LVPE---------ASIGFVHGQMSEIQLENTLMDFIEGVYDVLVATTIIETGVDISNVNT 897 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DG 617 + IENA+H GL+ L+QLRGRVGR I+ L+Y P L++ S RL +K TE G Sbjct: 898 LFIENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLDAIKGFTELGSG 957 Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAK 664 F IA DL R G ILG QSG + E++ LLE IA+K K Sbjct: 958 FKIAMRDLSIRGAGNILGASQSGFIDSV--GFEMYSQLLEEAIAKKQGK 1004 >gi|237797686|ref|ZP_04586147.1| transcription-repair coupling factor [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020536|gb|EGI00593.1| transcription-repair coupling factor [Pseudomonas syringae pv. oryzae str. 1_6] Length = 1150 Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 146/380 (38%), Positives = 211/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q++ I+ + DM M R++ GDVG GKT VA+ A AV G Q I+ Sbjct: 599 GFPFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A+ +A G+ I+IGTH L Q Sbjct: 659 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQ 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D ++ L LVI+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 719 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R ++T ++ N+ + E L L G + Y++ ++ EK ++ +V Sbjct: 779 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 837 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + I I HG+M + D E VM F + +LIA+T+IE GIDV A+ III Sbjct: 838 E---------ARIGIGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 888 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL P ++ ++ RL + NT+D GF++ Sbjct: 889 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITHDAEKRLEAIANTQDLGAGFVL 948 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 949 ATNDLEIRGAGELLGDGQSG 968 >gi|27365411|ref|NP_760939.1| transcription-repair coupling factor [Vibrio vulnificus CMCP6] gi|37680549|ref|NP_935158.1| transcription-repair coupling factor [Vibrio vulnificus YJ016] gi|27361558|gb|AAO10466.1| transcription-repair coupling factor [Vibrio vulnificus CMCP6] gi|37199297|dbj|BAC95129.1| transcription-repair coupling factor [Vibrio vulnificus YJ016] Length = 1153 Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 143/380 (37%), Positives = 212/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI +L DM Q M R++ GDVG GKT VA+ A A + Q ++ Sbjct: 599 GFPFEETDDQSMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNDKQVAVL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ +++ +E +A+G+ I++GTH L Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQIMEDVANGKVDILVGTHKLLS 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 719 SDLKFSDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVE 505 I PA R IKT + D+ + R ++ + G + Y++ Q+E V E Sbjct: 779 IATPPARRLAIKTF---VRESDDAVVREAILREIMRGGQVYFLHNQVE-----TIEKVAE 830 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 L + + I HG+M + + E VM+ F + LL+ TT+IE GIDV A+ II+ Sbjct: 831 DLTKLVPE--ARVTIAHGQMRERELERVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIM 888 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GFLI 620 + A++ GLAQLHQLRGRVGR + LL HP ++K++ RL + + ED GF + Sbjct: 889 DRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKSMTKDAIKRLDAIASLEDLGAGFTL 948 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG +QSG Sbjct: 949 ATHDLEIRGAGELLGDEQSG 968 >gi|330961341|gb|EGH61601.1| transcription-repair coupling factor [Pseudomonas syringae pv. maculicola str. ES4326] Length = 1150 Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 146/380 (38%), Positives = 211/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q++ I+ + DM M R++ GDVG GKT VA+ A AV G Q I+ Sbjct: 599 GFPFEETPDQQTTIEAVRADMLAPRPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A+ +A G+ I+IGTH L Q Sbjct: 659 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQ 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D ++ L LVI+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 719 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R ++T ++ N+ + E L L G + Y++ ++ EK ++ +V Sbjct: 779 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 837 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + I I HG+M + D E VM F + +LIA+T+IE GIDV A+ III Sbjct: 838 E---------ARIGIGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 888 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL P ++ ++ RL + NT+D GF++ Sbjct: 889 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVL 948 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 949 ATNDLEIRGAGELLGDGQSG 968 >gi|295096197|emb|CBK85287.1| transcription-repair coupling factor [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 1148 Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 146/386 (37%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQH++ + N + +E+++ + + LE+ + G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQTQILEQASEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDNLVVR-EAILREVLRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + +R L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAADRLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEDQSG 965 >gi|33152114|ref|NP_873467.1| transcription repair coupling factor [Haemophilus ducreyi 35000HP] gi|33148336|gb|AAP95856.1| transcription repair coupling factor [Haemophilus ducreyi 35000HP] Length = 1160 Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 148/381 (38%), Positives = 216/381 (56%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + PF T+ Q+ AI ++ DM Q M R++ GDVG GKT VA+ A AVE Q ++ Sbjct: 609 SFPFEETEDQKLAIHAVISDMCQAKAMDRLICGDVGFGKTEVAMRATYLAVENHKQVAVL 668 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHYE K N I +E+++ ++ L R+A + I+IGTH L Q Sbjct: 669 VPTTLLAQQHYEDFKDRFANYPINIEVLSRFKTAKEQKDILARVATHKVDILIGTHKLLQ 728 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D+++++ L L+++DE+HRF V+Q+ K+ Q +L +TATPIPRTL + G D+S Sbjct: 729 DNVKFHDLGLLVIDEEHRFSVRQKEKIKQLRANIDILTLTATPIPRTLNMALNGMRDLSI 788 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVV 504 I P+ R IKT + + D +I+ + +L E G + Y++ + + + Sbjct: 789 IASPPSRRLTIKTFV--CQQDDTIIK--EAILREILRGGQVYYLHNDV-----ATIENCA 839 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L + I I HG+M + D E VM F + LL+ +T+IE GIDV A+ II Sbjct: 840 TKLAELVPE--ARIVIGHGQMRERDLERVMSDFYHQRFNLLVCSTIIETGIDVPTANTII 897 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRL---SVLKNTEDGFL 619 IE A FGLAQLHQLRGRVGR + LL HP L+K++ RL S + N GF+ Sbjct: 898 IEQANKFGLAQLHQLRGRVGRSHHQAYAYLLTPHPKTLTKDAQQRLEAISSIDNLGAGFV 957 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG +QSG Sbjct: 958 LATHDLEIRGAGELLGAEQSG 978 >gi|283784907|ref|YP_003364772.1| transcription-repair coupling factor [Citrobacter rodentium ICC168] gi|282948361|emb|CBG87947.1| transcription-repair coupling factor [Citrobacter rodentium ICC168] Length = 1148 Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQH++ + N + +E+++ + + LE+ A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQAAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDNLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + V+R L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAVDRLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEDQSG 965 >gi|134302051|ref|YP_001122020.1| transcription-repair coupling factor [Francisella tularensis subsp. tularensis WY96-3418] gi|134049828|gb|ABO46899.1| transcription-repair coupling factor [Francisella tularensis subsp. tularensis WY96-3418] Length = 1141 Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 145/386 (37%), Positives = 211/386 (54%), Gaps = 21/386 (5%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 + + P+ T Q SAI D+ +DM M R++ GDVG GKT +A+ A A + Q Sbjct: 589 RFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQ 648 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 I+ P ILAQQHY K NT +E+IT + +++ E + G IIIGTH Sbjct: 649 VAILVPTTILAQQHYNSFKDRFTNTAFNIEVITRSKTPKAQQQLFEDLKKGTVDIIIGTH 708 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443 L I + L L+I+DE+HRFGV Q+ KL +L M+ATPIPR+L + Sbjct: 709 KLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALR 768 Query: 444 DISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESN 499 D+S I PA R +KT + N I E + R + G + +++ ++E +KK+ Sbjct: 769 DLSIIASPPAKRLSVKTFVKEYDNNIIREAVSRETI---RGGQIFYLYNKVETIQKKKEI 825 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + + R IAI HG+MS+ + + VM FK+ +L+ TT+IE GID+ + Sbjct: 826 LQELFPRL---------RIAIAHGQMSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPN 876 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED- 616 A+ +IIE+A + GLAQLHQLRGRVGR + +L ++K++ RL + NTE Sbjct: 877 ANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNEASITKDALKRLEAISNTESL 936 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GEILG +QSG Sbjct: 937 GGGFTLANHDLEIRGAGEILGEEQSG 962 >gi|254369252|ref|ZP_04985264.1| transcription-repair coupling factor,ATP-dependent [Francisella tularensis subsp. holarctica FSC022] gi|157122202|gb|EDO66342.1| transcription-repair coupling factor,ATP-dependent [Francisella tularensis subsp. holarctica FSC022] Length = 1141 Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 145/386 (37%), Positives = 211/386 (54%), Gaps = 21/386 (5%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 + + P+ T Q SAI D+ +DM M R++ GDVG GKT + + A A + Q Sbjct: 589 RFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEITMRAAFLATQNQKQ 648 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 I+ P ILAQQHY K NT I +E+IT + +++ E + G IIIGTH Sbjct: 649 VAILVPTTILAQQHYNSFKDRFTNTAINIEVITRSKTSKAQQQLFEDLKKGTVDIIIGTH 708 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443 L I + L L+I+DE+HRFGV Q+ KL +L M+ATPIPR+L + Sbjct: 709 KLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALR 768 Query: 444 DISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESN 499 D+S I PA R +KT + N I E + R + G + +++ ++E +KK+ Sbjct: 769 DLSIIASPPAKRLSVKTFVKEYDNNIIREAVSRETI---RGGQIFYLYNKVETIQKKKEI 825 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + + R IAI HG+MS+ + + VM FK+ +L+ TT+IE GID+ + Sbjct: 826 LQELFPRL---------RIAIAHGQMSEKEIQKVMFDFKHNKHHILLCTTIIETGIDIPN 876 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED- 616 A+ +IIE+A + GLAQLHQLRGRVGR + +L ++K++ RL + NTE Sbjct: 877 ANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNKASITKDALKRLEAISNTESL 936 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GEILG +QSG Sbjct: 937 GGGFTLANHDLEIRGAGEILGEEQSG 962 >gi|319945976|ref|ZP_08020225.1| transcription-repair coupling factor [Streptococcus australis ATCC 700641] gi|319747784|gb|EFW00029.1| transcription-repair coupling factor [Streptococcus australis ATCC 700641] Length = 1170 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 145/400 (36%), Positives = 226/400 (56%), Gaps = 23/400 (5%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 P+ T Q +I++I +DM + M R+L GDVG GKT VA+ A AV+ Q ++ Sbjct: 612 FPYVETDDQIRSIQEIKKDMESSSPMDRLLVGDVGFGKTEVAMRAAFKAVKDHKQVAVLV 671 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQHY K+ + + V++++ +A +++ LE++ GQ I+IGTH L Sbjct: 672 PTTVLAQQHYANFKERFEAFPVEVDVLSRFRSRAEQKETLEKLKKGQVDILIGTHRLLSK 731 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 +++ L L+++DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 732 DVEFSDLGLIVIDEEQRFGVKHKETLKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSVI 791 Query: 449 TEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504 P R P++T ++ N I + I R + G + Y++ +++ E+K S + +V Sbjct: 792 ETPPTNRYPVQTYVLETNPTIIRDAIRR---EMDRGGQVYYLYNKVDTIEQKVSELQELV 848 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 +SI +HG+MS++ E+ + F G +L+ TT+IE G+D+ +A+ + Sbjct: 849 PE---------ASIGFVHGQMSEVRLENTLMDFIEGEYDILVTTTIIETGVDIPNANTLF 899 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFL 619 IENA+H GL+ L+QLRGRVGR I+ L+Y P L++ S RL +K TE GF Sbjct: 900 IENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKTLTEVSEKRLEAIKGFTELGSGFK 959 Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 IA DL R G ILG QSG + E++ LLE A Sbjct: 960 IAMRDLSIRGAGNILGASQSGFIDSVGF--EMYSQLLEAA 997 >gi|205353050|ref|YP_002226851.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272831|emb|CAR37757.1| transcription-repair coupling factor (TrcF) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628129|gb|EGE34472.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 1148 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 149/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +EI++ + + L A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEILSRFRSAKEQTQILAEAAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|120598668|ref|YP_963242.1| transcription-repair coupling factor [Shewanella sp. W3-18-1] gi|120558761|gb|ABM24688.1| transcription-repair coupling factor [Shewanella sp. W3-18-1] Length = 1162 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 146/384 (38%), Positives = 213/384 (55%), Gaps = 23/384 (5%) Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 + PF T QESAI +L DM M R++ GDVG GKT VA+ A AV AG Q V+ Sbjct: 607 QGFPFEETVDQESAIHAVLADMRSPIAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVV 666 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 + P +LAQQHYE K + ++ E+++ + + L+++ G+ I+IGTH L Sbjct: 667 LVPTTLLAQQHYENFKDRFADWPVVTEVMSRFRTAKEQTQVLKQLEEGKVDIVIGTHKLL 726 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 Q ++ L L+I+DE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 727 QSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLS 786 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFR 501 I PA R +KT + R + + +L E G + Y++ +E EK Sbjct: 787 IIATPPAKRLAVKTFV----RESDPATVREAILREILRGGQVYYLHNNVESIEKCAQGII 842 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 +V + + + HG+M + D E VM F + +L+ TT+IE GIDV A+ Sbjct: 843 DLVPE---------ARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSAN 893 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED--- 616 IIIE A+ FGLAQLHQLRGRVGR + L+ HP ++ ++ RL + ED Sbjct: 894 TIIIERADTFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTSDARKRLEAIDALEDLGA 953 Query: 617 GFLIAEEDLKQRKEGEILGIKQSG 640 GF++A +DL+ R GE+LG +QSG Sbjct: 954 GFMLATQDLEIRGAGELLGDEQSG 977 >gi|332993550|gb|AEF03605.1| transcription-repair coupling factor [Alteromonas sp. SN2] Length = 1172 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 148/396 (37%), Positives = 220/396 (55%), Gaps = 17/396 (4%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G N+E QK + PF T Q AI ++ DM + M R++ GDVG GKT VA+ Sbjct: 605 GFAYNIEWDEYQKFADSFPFEETPDQAQAIAAVIHDMGSPHAMDRLVCGDVGFGKTEVAM 664 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A A G Q I+ P +LAQQH+E K +E+++ + +++ ++R+ Sbjct: 665 RAAFLAANQGKQVAILVPTTLLAQQHHENFKDRFAAWPFEIEVMSRFISAKGQKETMQRL 724 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 + G+ I++GTH L + I++ L L+I+DE+HRFGV+Q+ KL +L +TATPI Sbjct: 725 SEGKVDIVVGTHKLLSNDIKFKDLGLLIIDEEHRFGVRQKEKLKSLRADVDILTLTATPI 784 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWIC 489 PRTL + G D+S I PA R IKT + N+ I E I R + G + Y++ Sbjct: 785 PRTLNMAMSGMRDLSIIATAPARRLSIKTFVQQRNKATIREAIMR---EILRGGQVYFLH 841 Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549 ++ ++ R+ E + E + IA+ HG+M + + E VM F + +L+ TT Sbjct: 842 NEV----DTIARTAEEIAEIVPE---ARIAMGHGQMRERELEGVMSDFYHQRYNVLVCTT 894 Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTR 607 +IE GIDV A+ II++ A+H GLAQLHQLRGRVGR + LL HP ++K++ R Sbjct: 895 IIETGIDVPSANTIIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAAKR 954 Query: 608 LSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 L + ED GF +A DL+ R GE+LG QSG Sbjct: 955 LDAISKLEDLGAGFALATHDLEIRGAGELLGDDQSG 990 >gi|71278327|ref|YP_268864.1| transcription-repair coupling factor [Colwellia psychrerythraea 34H] gi|71144067|gb|AAZ24540.1| transcription-repair coupling factor [Colwellia psychrerythraea 34H] Length = 1207 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 141/379 (37%), Positives = 214/379 (56%), Gaps = 21/379 (5%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q+ AI ++ DM M R++ GDVG GKT VA+ A AV G Q I+ P Sbjct: 662 FEETFDQKQAINAVVSDMLSPKTMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVAILVPT 721 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LAQQHYE + N ++ E+++ +++ + R+ GQ I+IGTH L Q+SI Sbjct: 722 TLLAQQHYENFRDRFANWPVVTEVLSRFKTPKEQKEVIARVESGQVDILIGTHKLLQNSI 781 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 +Y L L++VDE+HRFGV+Q+ K+ Q + +L +TATPIPRTL + G D+S I Sbjct: 782 KYKDLGLLVVDEEHRFGVKQKEKIKQLRSNVDILTLTATPIPRTLNMAMGGMRDLSIIAT 841 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSVVER 506 PA R +KT + DE + R V+ S G + Y++ ++ +K ++ + +V Sbjct: 842 PPAKRLAVKTF---VREHDEALIREAVLRETSRGGQVYYLHNHVDTIDKTAADIQKLVPE 898 Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 + + HG+M + + E +M F + +++ TT+IE GIDV A+ II++ Sbjct: 899 ---------ARVVTAHGQMRERELERIMSDFYHQRFNVIVCTTIIETGIDVPSANTIIMD 949 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GFLIA 621 A+H GLAQLHQLRGRVGR + LL + ++K++ RL + + ED GF +A Sbjct: 950 RADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHEKRITKDAKKRLEAIASLEDLGAGFTLA 1009 Query: 622 EEDLKQRKEGEILGIKQSG 640 DL+ R GE+LG QSG Sbjct: 1010 THDLEIRGAGELLGEDQSG 1028 >gi|323222138|gb|EGA06523.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] Length = 1049 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 492 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 551 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+++ + + L A G+ I+IGT Sbjct: 552 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILSEAAEGKIDILIGT 611 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 612 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 671 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 672 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 722 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 723 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 780 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 781 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 840 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 841 GAGFALATHDLEIRGAGELLGEEQSG 866 >gi|146293254|ref|YP_001183678.1| transcription-repair coupling factor [Shewanella putrefaciens CN-32] gi|145564944|gb|ABP75879.1| transcription-repair coupling factor [Shewanella putrefaciens CN-32] Length = 1162 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 158/430 (36%), Positives = 232/430 (53%), Gaps = 29/430 (6%) Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 + PF T QESAI +L DM M R++ GDVG GKT VA+ A AV AG Q V+ Sbjct: 607 QGFPFEETVDQESAIHAVLADMRSPIAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVV 666 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 + P +LAQQHYE K + ++ E+++ + + L+++ G+ I+IGTH L Sbjct: 667 LVPTTLLAQQHYENFKDRFADWPVVTEVMSRFRTAKEQTQVLKQLEEGKVDIVIGTHKLL 726 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 Q ++ L L+I+DE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 727 QSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLS 786 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFR 501 I PA R +KT + R + + +L E G + Y++ +E EK Sbjct: 787 IIATPPAKRLAVKTFV----RESDPATVREAILREILRGGQVYYLHNNVESIEKCAQGII 842 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 +V + + + HG+M + D E VM F + +L+ TT+IE GIDV A+ Sbjct: 843 DLVPE---------ARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSAN 893 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED--- 616 IIIE A+ FGLAQLHQLRGRVGR + L+ HP ++ ++ RL + ED Sbjct: 894 TIIIERADTFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTSDARKRLEAIDALEDLGA 953 Query: 617 GFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 GF++A +DL+ R GE+LG +QSG + K + L+ +LE A K K ++P L Sbjct: 954 GFMLATQDLEIRGAGELLGDEQSGHISKIGFS---LYMEMLEAAVKALKQ--GKEPSLAQ 1008 Query: 676 VRGQSIRILL 685 + Q I L Sbjct: 1009 MLNQQCEIEL 1018 >gi|288549507|ref|ZP_06390702.1| transcription-repair coupling factor [Enterobacter cancerogenus ATCC 35316] gi|288318220|gb|EFC57158.1| transcription-repair coupling factor [Enterobacter cancerogenus ATCC 35316] Length = 992 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 146/386 (37%), Positives = 214/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 435 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNK 494 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQH++ + N + +E+++ + LE+ + G+ I+IGT Sbjct: 495 QVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQTSILEQASEGKIDILIGT 554 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 555 HKLLQSDVKWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 614 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 615 RDLSIIATPPARRLAVKTF---VREYDNLVVR-EAILREVLRGGQVYYLYNDVE-----N 665 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + +R L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 666 IQKAADRLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 723 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 724 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 783 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 784 GAGFALATHDLEIRGAGELLGEDQSG 809 >gi|238758409|ref|ZP_04619586.1| Transcription-repair-coupling factor [Yersinia aldovae ATCC 35236] gi|238703313|gb|EEP95853.1| Transcription-repair-coupling factor [Yersinia aldovae ATCC 35236] Length = 1148 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 146/386 (37%), Positives = 212/386 (54%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q ++ PF T QE AI +L DM Q M R++ GDVG GKT VA+ A AV Sbjct: 591 QLFCQSFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVANNK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQH++ + + +E+++ ++ L + A G+ IIIGT Sbjct: 651 QVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMMSRFRSAKEQQVILGQAAEGKVDIIIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q + ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDLHWHDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 +R L + IAI HG+M + D E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IEKATQRLAELVPE--ARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPS 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL P ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMTTDAKKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEDQSG 965 >gi|121998047|ref|YP_001002834.1| transcription-repair coupling factor [Halorhodospira halophila SL1] gi|121589452|gb|ABM62032.1| transcription-repair coupling factor [Halorhodospira halophila SL1] Length = 1147 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 151/403 (37%), Positives = 223/403 (55%), Gaps = 19/403 (4%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 PF T Q++AI+ +L D+ M R++ GDVG GKT VA+ A A V+AG Q ++ Sbjct: 594 FPFEETPDQQAAIQAVLDDLRSDQPMDRVVCGDVGFGKTEVAMRAAFAGVQAGRQVAMLV 653 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQHY+ + + +E ++ + K L RIA G+A ++IGTH L Sbjct: 654 PTTLLAQQHYQNFADRFADWPVRIESLSRFTGKKGNEKTLARIASGEADVVIGTHKLLGS 713 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 +Q+ L LVI+DE+ RFGV+Q+ +L + VL +TATPIPRTL ++ G D+S I Sbjct: 714 EVQFKNLGLVIIDEEQRFGVRQKERLKRLRAEVDVLTLTATPIPRTLNMSMAGIRDLSVI 773 Query: 449 TEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R +KT + + D +I E + L G + Y++ ++ +S+ Sbjct: 774 ATPPERRLAVKTFVQEWS--DGLIREACQRELQRGGQVYFLY--------NDVKSIERTA 823 Query: 508 NSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 N L + + I + HG+M + + E VM F + +L+ TT+IE GID+ A+ III Sbjct: 824 NQLRDLMPEARIGVAHGQMRERELEQVMLDFYHQRFDILVCTTIIESGIDIPTANTIIIH 883 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIA 621 A+ FGLAQLHQLRGRVGR + LL PP ++ ++ RL + ED GF +A Sbjct: 884 RADRFGLAQLHQLRGRVGRSHHRAYAYLLAPPPNAMTADALKRLEAISQLEDLGVGFALA 943 Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 DL+ R GE+LG +QSG + + L+ LLE A KD K Sbjct: 944 SHDLEIRGAGELLGDEQSGQIQEVGFT--LYSQLLERAVKDLK 984 >gi|56707766|ref|YP_169662.1| transcription-repair coupling factor [Francisella tularensis subsp. tularensis SCHU S4] gi|110670237|ref|YP_666794.1| transcription-repair coupling factor [Francisella tularensis subsp. tularensis FSC198] gi|224456837|ref|ZP_03665310.1| transcription-repair coupling factor [Francisella tularensis subsp. tularensis MA00-2987] gi|254874578|ref|ZP_05247288.1| transcription-repair coupling factor, ATP-dependent [Francisella tularensis subsp. tularensis MA00-2987] gi|56604258|emb|CAG45277.1| Transcription-repair coupling factor,ATP-dependent [Francisella tularensis subsp. tularensis SCHU S4] gi|110320570|emb|CAL08660.1| Transcription-repair coupling factor,ATP-dependent [Francisella tularensis subsp. tularensis FSC198] gi|254840577|gb|EET19013.1| transcription-repair coupling factor, ATP-dependent [Francisella tularensis subsp. tularensis MA00-2987] gi|282158938|gb|ADA78329.1| Transcription-repair coupling factor,ATP-dependent [Francisella tularensis subsp. tularensis NE061598] Length = 1141 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 145/386 (37%), Positives = 211/386 (54%), Gaps = 21/386 (5%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 + + P+ T Q SAI D+ +DM M R++ GDVG GKT +A+ A A + Q Sbjct: 589 RFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQ 648 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 I+ P ILAQQHY K NT +E+IT + +++ E + G IIIGTH Sbjct: 649 VAILVPTTILAQQHYNSFKDRFTNTAFNIEVITRSKTPKAQQQLFEDLKKGTIDIIIGTH 708 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443 L I + L L+I+DE+HRFGV Q+ KL +L M+ATPIPR+L + Sbjct: 709 KLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALR 768 Query: 444 DISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESN 499 D+S I PA R +KT + N I E + R + G + +++ ++E +KK+ Sbjct: 769 DLSIIASPPAKRLSVKTFVKEYDNNIIREAVSRETI---RGGQIFYLYNKVETIQKKKEI 825 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + + R IAI HG+MS+ + + VM FK+ +L+ TT+IE GID+ + Sbjct: 826 LQELFPRL---------RIAIAHGQMSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPN 876 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED- 616 A+ +IIE+A + GLAQLHQLRGRVGR + +L ++K++ RL + NTE Sbjct: 877 ANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNEASITKDALKRLEAISNTESL 936 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GEILG +QSG Sbjct: 937 GGGFTLANHDLEIRGAGEILGEEQSG 962 >gi|311279979|ref|YP_003942210.1| transcription-repair coupling factor [Enterobacter cloacae SCF1] gi|308749174|gb|ADO48926.1| transcription-repair coupling factor [Enterobacter cloacae SCF1] Length = 1148 Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 147/386 (38%), Positives = 214/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+++ + LE+ + G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQSLILEQASEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAMLREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + +R L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAADRLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEDQSG 965 >gi|227512317|ref|ZP_03942366.1| transcription-repair coupling factor [Lactobacillus buchneri ATCC 11577] gi|227084492|gb|EEI19804.1| transcription-repair coupling factor [Lactobacillus buchneri ATCC 11577] Length = 1168 Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 144/429 (33%), Positives = 232/429 (54%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ + E +A + L ++ +K P + + + P++ T Q Sbjct: 559 EWQKTKRKVASKIEDIADDLIELYAKRDAEKGYAYP--PDDSLQNEFEARFPYTETPDQL 616 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM M R+L GDVG GKT VAL A AVE G Q + P ILAQQHY Sbjct: 617 RSADEIKHDMEHNKPMDRLLVGDVGYGKTEVALRAAFKAVEVGKQVAFLVPTTILAQQHY 676 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + + + I V +++ A ++ LE + G +++GTH L +++ L L+ Sbjct: 677 ETMLERFSDYPIEVRVLSRFQTTAQIKETLEGLKKGTVDVVVGTHRLLSKDVKFSNLGLL 736 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + ++ + T VL +TATPIPRTL ++ +G D+S I P+ R PI Sbjct: 737 IIDEEQRFGVKHKERIKEMRTDVDVLTLTATPIPRTLNMSMMGVRDLSVIETPPSNRYPI 796 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T +I N I E IER ++ G + +++ ++ ++ V + + L + Sbjct: 797 QTYVIEQNAGTIREAIER---EMARGGQVFYLHNRV-----ADIEKTVSQLSELVPD--A 846 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 IA IHG+M++ E ++ F NG +L+ TT+IE G+D+ + + + +ENA+H GL+QL Sbjct: 847 RIAYIHGQMTENQMEDILYDFVNGEYDVLVTTTIIETGVDIPNVNTLFVENADHMGLSQL 906 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGR+GR ++ +Y P L++ RL +++ TE GF IA DL R G Sbjct: 907 YQLRGRIGRSSRVAYAYFMYQPNKVLTEIGEKRLEAIRDFTELGSGFKIAMRDLSIRGAG 966 Query: 632 EILGIKQSG 640 +LG +QSG Sbjct: 967 NLLGKQQSG 975 >gi|238791842|ref|ZP_04635479.1| Transcription-repair-coupling factor [Yersinia intermedia ATCC 29909] gi|238728946|gb|EEQ20463.1| Transcription-repair-coupling factor [Yersinia intermedia ATCC 29909] Length = 1148 Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 146/386 (37%), Positives = 213/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q ++ PF T QE AI +L DM + M R++ GDVG GKT VA+ A AV Sbjct: 591 QLFCQSFPFETTPDQEQAINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVANNK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQH++ + + +E+++ ++ LE+ A G+ IIIGT Sbjct: 651 QVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMMSRFRSAKEQQVILEQAAEGKVDIIIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDLRWQDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVIR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 +R L + IAI HG+M + D E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IEKATQRLAELVPE--ARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPS 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL P ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMTTDAKKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEDQSG 965 >gi|168021077|ref|XP_001763068.1| predicted protein [Physcomitrella patens subsp. patens] gi|162685551|gb|EDQ71945.1| predicted protein [Physcomitrella patens subsp. patens] Length = 792 Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 144/424 (33%), Positives = 242/424 (57%), Gaps = 19/424 (4%) Query: 224 ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283 ++ +LA +L+ + L + R + + + P N K+ P+ T Q AI D Sbjct: 193 SKGKLAIQKLVVNMMELYIHRLKQTRPV-YPKN--SKLMDSFAAKFPYKETSDQVQAIAD 249 Query: 284 ILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342 + +DM+++ M R++ GDVG GKT VAL A+ A AG QA+++AP +LA+QHY+ I+ Sbjct: 250 VERDMTERETPMDRLICGDVGFGKTEVALRALFLAASAGRQAMLLAPTTVLAKQHYDVIR 309 Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402 + + V +++ +++ + I+ G I++GTH+L + ++Y+ L L++VDE Sbjct: 310 QRFAGYDMKVALLSRFQKDGEKKEVIAGISDGSLSIVVGTHSLLGNQVRYHNLGLLVVDE 369 Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462 + RFGV+Q+ ++T T+ VL ++ATPIPRTL L G D S IT PA R+PI T + Sbjct: 370 EQRFGVRQKERITSMKTSVDVLTLSATPIPRTLYLALSGFRDASLITTPPAERRPITTHL 429 Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522 + N + V + + L G + +++ P+++ +ES ++++E + I + H Sbjct: 430 MEFNP-EAVKKAIDFELKRGGQVFYVVPRVKGMEES--KAILESYFP-----DVGIGVAH 481 Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582 G+ S E M+ F GT +L+ T+++E G+D+ + IIIE+ + FGLAQL+QLRGR Sbjct: 482 GQQSATVLEESMEQFSEGTYLILLCTSIVESGLDIRRVNTIIIEDVQLFGLAQLYQLRGR 541 Query: 583 VGRGEEISSCILLYHPP---LSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGI 636 VGR + + ++HP LS ++ RL L++ GF +AE D+ R G + G Sbjct: 542 VGRSDR-EAHAYMFHPSKENLSDDALERLVALEDCCGLGQGFQLAERDMAIRGIGSVFGE 600 Query: 637 KQSG 640 KQSG Sbjct: 601 KQSG 604 >gi|104782724|ref|YP_609222.1| transcription-repair coupling protein [Pseudomonas entomophila L48] gi|95111711|emb|CAK16435.1| transcription-repair coupling protein [Pseudomonas entomophila L48] Length = 1149 Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 145/380 (38%), Positives = 211/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q++AI+ + DM M R++ GDVG GKT VA+ A AV +G Q ++ Sbjct: 598 GFPFEETPDQQAAIEAVRADMLAGQPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVL 657 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A +A G+ I+IGTH L Q Sbjct: 658 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVATAAAELAEGKIDILIGTHKLLQ 717 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D +++ L L I+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 718 DDVRFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 777 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R ++T ++ N+ V E L L G + Y++ ++ EK + +V Sbjct: 778 IATPPARRLSVRTFVMEQNK-STVKEALLRELLRGGQVYYLHNDVKTIEKCAAELAELVP 836 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + I I HG+M + + E VM F + +LIA+T+IE GIDV A+ I+I Sbjct: 837 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIVI 887 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL P +S ++ RL + NT+D GF++ Sbjct: 888 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRQQISADAEKRLEAIANTQDLGAGFVL 947 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 948 ATNDLEIRGAGELLGEGQSG 967 >gi|238754400|ref|ZP_04615756.1| Transcription-repair-coupling factor [Yersinia ruckeri ATCC 29473] gi|238707433|gb|EEP99794.1| Transcription-repair-coupling factor [Yersinia ruckeri ATCC 29473] Length = 1148 Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 145/382 (37%), Positives = 211/382 (55%), Gaps = 19/382 (4%) Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 ++ PF T QE AI +L DM Q M R++ GDVG GKT VA+ A AV Q + Sbjct: 595 QSFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVSNNKQVAV 654 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 + P +LAQQH++ + + +E+++ ++ LE+ A G+ I+IGTH L Sbjct: 655 LVPTTLLAQQHFDNFRDRFATWPVRIEMLSRFRSAKEQQVILEQAAEGKVDILIGTHKLL 714 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 Q + + L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G D+S Sbjct: 715 QSDLHWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLS 774 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSV 503 I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 775 IIATPPARRLAVKTF---VREYDSLVVR-EAILREVLRGGQVYYLYNDVE-----NIEKA 825 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 +R L + IAI HG+M + D E VM+ F + +L+ TT+IE GID+ A+ I Sbjct: 826 TQRLAELVPE--ARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTI 883 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GF 618 IIE A+HFGLAQLHQLRGRVGR + LL P ++ ++ RL + + ED GF Sbjct: 884 IIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMTTDAKKRLEAIASLEDLGAGF 943 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG QSG Sbjct: 944 ALATHDLEIRGAGELLGEDQSG 965 >gi|227522403|ref|ZP_03952452.1| transcription-repair coupling factor [Lactobacillus hilgardii ATCC 8290] gi|227090461|gb|EEI25773.1| transcription-repair coupling factor [Lactobacillus hilgardii ATCC 8290] Length = 1168 Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 144/429 (33%), Positives = 232/429 (54%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ + E +A + L ++ +K P + + + P++ T Q Sbjct: 559 EWQKTKRKVASKIEDIADDLIELYAKRDAEKGYAYP--PDDSLQNEFEARFPYTETPDQL 616 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM M R+L GDVG GKT VAL A AVE G Q + P ILAQQHY Sbjct: 617 RSADEIKHDMEHNKPMDRLLVGDVGYGKTEVALRAAFKAVEVGKQVAFLVPTTILAQQHY 676 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + + + I V +++ A ++ LE + G +++GTH L +++ L L+ Sbjct: 677 ETMLERFSDYPIEVRVLSRFQTTAQIKETLEGLKKGTVDVVVGTHRLLSKDVKFSNLGLL 736 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + ++ + T VL +TATPIPRTL ++ +G D+S I P+ R PI Sbjct: 737 IIDEEQRFGVKHKERIKEMRTDVDVLTLTATPIPRTLNMSMMGVRDLSVIETPPSNRYPI 796 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T +I N I E IER ++ G + +++ ++ ++ V + + L + Sbjct: 797 QTYVIEQNAGTIREAIER---EMARGGQVFYLHNRV-----ADIEKTVSQLSELVPD--A 846 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 IA IHG+M++ E ++ F NG +L+ TT+IE G+D+ + + + +ENA+H GL+QL Sbjct: 847 RIAYIHGQMTENQMEDILYDFVNGEYDVLVTTTIIETGVDIPNVNTLFVENADHMGLSQL 906 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGR+GR ++ +Y P L++ RL +++ TE GF IA DL R G Sbjct: 907 YQLRGRIGRSSRVAYAYFMYQPNKVLTEIGEKRLEAIRDFTELGSGFKIAMRDLSIRGAG 966 Query: 632 EILGIKQSG 640 +LG +QSG Sbjct: 967 NLLGKQQSG 975 >gi|153948693|ref|YP_001400575.1| transcription-repair coupling factor [Yersinia pseudotuberculosis IP 31758] gi|152960188|gb|ABS47649.1| transcription-repair coupling factor [Yersinia pseudotuberculosis IP 31758] Length = 1148 Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 146/386 (37%), Positives = 213/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q ++ PF T QE AI +L DM Q M R++ GDVG GKT VA+ A AV Sbjct: 591 QLFCQSFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVTNNK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQH++ + + +E+++ ++ LE+ A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMLSRFRSAKEQQVILEQAAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q + ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDLHWHDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVIR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 V ++ L + IAI HG+M + D E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IEKVTQKLAELVPE--ARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPS 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616 A+ IIIE A+H GLAQLHQLRGRVGR + LL P +S ++ RL + + ED Sbjct: 880 ANTIIIERADHLGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSTDAKKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEDQSG 965 >gi|315222838|ref|ZP_07864723.1| transcription-repair coupling factor [Streptococcus anginosus F0211] gi|315188074|gb|EFU21804.1| transcription-repair coupling factor [Streptococcus anginosus F0211] Length = 1168 Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 157/439 (35%), Positives = 240/439 (54%), Gaps = 30/439 (6%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 I L R Q K G + + Q+ + P+ T+ Q +IK++ +DM + M R+ Sbjct: 584 IKLYSERSQLK---GFAFSSDDSYQQEFDNDFPYVETEDQLRSIKEVKKDMESDHPMDRL 640 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 L GDVG GKT VA+ A AV Q I+ P +LAQQHY K+ + I +E+++ Sbjct: 641 LVGDVGFGKTEVAMRAAFKAVNDHKQVAILVPTTVLAQQHYTNFKERFNDFPINIEVLSR 700 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 ++ ++ LE++ GQ IIIGTH L I + L L+++DE+ RFGV+ + KL + Sbjct: 701 FKSKSEQKIILEKLKKGQVDIIIGTHRLLSKDIVFADLGLIVIDEEQRFGVKHKEKLKEL 760 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI---DEVIER 474 T VL +TATPIPRTL ++ LG D+S I P R P++T ++ N D V+ Sbjct: 761 KTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNATVIRDAVLRE 820 Query: 475 LKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532 + G + Y++ +++ E+K S + ++ +SI +HG+MS+I E+ Sbjct: 821 ----MDRGGQVYYLYNKVDTMEQKVSELKELIPE---------ASIGYVHGQMSEILLEN 867 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 + F NG +L+ TT+IE G+D+ + + + IENA++ GL+ L+QLRGR+GR I+ Sbjct: 868 TLLDFINGEYDILVTTTIIETGVDIPNVNTLFIENADYMGLSTLYQLRGRIGRSNRIAYA 927 Query: 593 ILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 L+Y P L++ S RL +K TE GF IA DL R G ILG QSG + Sbjct: 928 YLMYRPDKILTEISEKRLETIKGFTELGSGFKIAMRDLSIRGAGNILGSSQSGFIDSV-- 985 Query: 648 QPELHDSLLE--IARKDAK 664 E++ LLE IA+K K Sbjct: 986 GFEMYSQLLEEAIAKKQGK 1004 >gi|213649271|ref|ZP_03379324.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 1130 Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 573 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 632 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+++ + + L A G+ I+IGT Sbjct: 633 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 692 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 693 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 752 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 753 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 803 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 804 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 861 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 862 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTADAQKRLEAIASLEDL 921 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 922 GAGFALATHDLEIRGAGELLGEEQSG 947 >gi|51596765|ref|YP_070956.1| transcription-repair coupling factor [Yersinia pseudotuberculosis IP 32953] gi|186895833|ref|YP_001872945.1| transcription-repair coupling factor [Yersinia pseudotuberculosis PB1/+] gi|51590047|emb|CAH21681.1| transcription-repair coupling factor [Yersinia pseudotuberculosis IP 32953] gi|186698859|gb|ACC89488.1| transcription-repair coupling factor [Yersinia pseudotuberculosis PB1/+] Length = 1148 Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 146/386 (37%), Positives = 213/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q ++ PF T QE AI +L DM Q M R++ GDVG GKT VA+ A AV Sbjct: 591 QLFCQSFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVTNNK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQH++ + + +E+++ ++ LE+ A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMLSRFRSAKEQQVILEQAAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q + ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDLHWHDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVIR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 V ++ L + IAI HG+M + D E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IEKVTQKLAELVPE--ARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPS 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616 A+ IIIE A+H GLAQLHQLRGRVGR + LL P +S ++ RL + + ED Sbjct: 880 ANTIIIERADHLGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSTDAKKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEDQSG 965 >gi|332306962|ref|YP_004434813.1| transcription-repair coupling factor [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174291|gb|AEE23545.1| transcription-repair coupling factor [Glaciecola agarilytica 4H-3-7+YE-5] Length = 1160 Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 146/387 (37%), Positives = 212/387 (54%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q+ AI ++QDM N M R++ GDVG GKT VA+ A A G Sbjct: 602 QAFSDSFPFEETLDQQQAINAVIQDMGSSNAMDRLVCGDVGFGKTEVAMRAAFIAANQGK 661 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P +LAQQHYE K + +E+++ ++ + + G+ I++GT Sbjct: 662 QVAILVPTTLLAQQHYENFKDRFADWPFKIEVMSRFASAKDQKDVMAGLDDGKVDIVVGT 721 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L LVI+DE+HRFGV+Q+ K + +L +TATPIPRTL + G Sbjct: 722 HKLLQSDVKFDDLGLVIIDEEHRFGVRQKEKFKALRSDVDILTLTATPIPRTLNMALSGM 781 Query: 443 IDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I PA R IKT + N+ I E I R + G + Y++ ++E E+ Sbjct: 782 RDLSIIATPPAKRLAIKTFVNQRNKELIREAIMR---EILRGGQVYFLHNEVESIERTAD 838 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + IAI HG+M + + E VM F + +L+ TT+IE GIDV Sbjct: 839 EIAEIVPE---------ARIAIGHGQMRERELEKVMGDFYHQRYNVLVCTTIIETGIDVP 889 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED 616 A+ II++ A+H GLAQLHQLRGRVGR + LL HP ++K++ RL + + ED Sbjct: 890 TANTIIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAKKRLDAISSLED 949 Query: 617 ---GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG Q+G Sbjct: 950 LGAGFALATHDLEIRGAGELLGDDQTG 976 >gi|156973818|ref|YP_001444725.1| transcription-repair coupling factor [Vibrio harveyi ATCC BAA-1116] gi|156525412|gb|ABU70498.1| hypothetical protein VIBHAR_01528 [Vibrio harveyi ATCC BAA-1116] Length = 1153 Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 142/381 (37%), Positives = 213/381 (55%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q +AI +L DM Q M R++ GDVG GKT VA+ A A + Q ++ Sbjct: 599 TFPFEETDDQSTAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ ++ L+ +A G+ I++GTH L Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLS 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 719 SDIKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKV-VLSEGKKAYWICPQIE--EKKESNFRSVV 504 I PA R IKT + R D V+ + + G + Y++ Q+E EK + + ++ Sbjct: 779 IATPPARRLAIKTFV--RQREDSVVREAALREIMRGGQVYFLHNQVETIEKTAEDLQKLI 836 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + + + HG+M + + E +M+ F + LL+ TT+IE GIDV A+ II Sbjct: 837 PE---------ARVTVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTII 887 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GFL 619 ++ A++ GLAQLHQLRGRVGR + LL HP ++K++ RL + + ED GF Sbjct: 888 MDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAITKDAIKRLDAIASLEDLGAGFT 947 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG +QSG Sbjct: 948 LATHDLEIRGAGELLGDEQSG 968 >gi|167011026|ref|ZP_02275957.1| transcription-repair coupling factor [Francisella tularensis subsp. holarctica FSC200] Length = 847 Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 145/382 (37%), Positives = 210/382 (54%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q SAI D+ +DM M R++ GDVG GKT + + A A + Q I+ Sbjct: 299 DFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEITMRAAFLATQNQKQVAIL 358 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHY K NT I +E+IT + +++ E + G IIIGTH L Sbjct: 359 VPTTILAQQHYNSFKDRFTNTAINIEVITRSKTSKAQQQLFEDLKKGTVDIIIGTHKLIS 418 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I + L L+I+DE+HRFGV Q+ KL +L M+ATPIPR+L + D+S Sbjct: 419 SKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALRDLSI 478 Query: 448 ITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSV 503 I PA R +KT + N I E + R + G + +++ ++E +KK+ + + Sbjct: 479 IASPPAKRLSVKTFVKEYDNNIIREAVSRETI---RGGQIFYLYNKVETIQKKKEILQEL 535 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 R IAI HG+MS+ + + VM FK+ +L+ TT+IE GID+ +A+ + Sbjct: 536 FPRL---------RIAIAHGQMSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPNANTL 586 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GF 618 IIE+A + GLAQLHQLRGRVGR + +L ++K++ RL + NTE GF Sbjct: 587 IIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNKASITKDALKRLEAISNTESLGGGF 646 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GEILG +QSG Sbjct: 647 TLANHDLEIRGAGEILGEEQSG 668 >gi|161503691|ref|YP_001570803.1| transcription-repair coupling factor [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865038|gb|ABX21661.1| hypothetical protein SARI_01775 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 1148 Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+++ + + L A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQAQILAEAAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREVLRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|228476216|ref|ZP_04060919.1| transcription-repair coupling factor [Staphylococcus hominis SK119] gi|228269701|gb|EEK11200.1| transcription-repair coupling factor [Staphylococcus hominis SK119] Length = 1169 Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 153/417 (36%), Positives = 231/417 (55%), Gaps = 21/417 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I++I +DM ++ M R+L GDVG GKT VA+ A AV G Q + Sbjct: 615 DFPYELTPDQAKSIEEIKEDMEKERPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 674 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++I+ R+ E + G I++GTH L Sbjct: 675 VPTTILAQQHYETLIERMQDFPVEIQLISRFRTAKEVRETKEGLKSGYVDIVVGTHKLLS 734 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ T VL +TATPIPRTL ++ LG D+S Sbjct: 735 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKTNVDVLTLTATPIPRTLHMSMLGVRDLSV 794 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 795 IETPPENRFPVQTYVLEQNSNFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 843 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF NG +L+ TT+IE G+DV +A+ +I Sbjct: 844 KREQLQMLMPEANIAVAHGQMTERDLEETMLSFINGEYDILVTTTIIETGVDVPNANTLI 903 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFL 619 IE A+ FGL+QL+QLRGRVGR I L+ + L++ + RL +K TE GF Sbjct: 904 IEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHSTNKVLTETAEERLQAIKEFTELGSGFK 963 Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676 IA DL R G +LG +Q G + +L+ +LE A + + I + PD V Sbjct: 964 IAMRDLNIRGAGNLLGKQQHGFIDSV--GFDLYSQMLEEAVNEKRGITEEVPDAPDV 1018 >gi|227509305|ref|ZP_03939354.1| transcription-repair coupling factor [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191235|gb|EEI71302.1| transcription-repair coupling factor [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 1168 Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 144/429 (33%), Positives = 232/429 (54%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ + E +A + L ++ +K P + + + P++ T Q Sbjct: 559 EWQKTKRKVASKIEDIADDLIELYAKRDAEKGYAYP--PDDSLQNEFEARFPYTETPDQL 616 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM M R+L GDVG GKT VAL A AVE G Q + P ILAQQHY Sbjct: 617 RSADEIKHDMEHNKPMDRLLVGDVGYGKTEVALRAAFKAVEVGKQVAFLVPTTILAQQHY 676 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + + + I V +++ A ++ LE + G +++GTH L +++ L L+ Sbjct: 677 ETMLERFSDYPIEVRVLSRFQTTAQIKETLEGLKKGTVDVVVGTHRLLSKDVKFSNLGLL 736 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + ++ + T VL +TATPIPRTL ++ +G D+S I P+ R PI Sbjct: 737 IIDEEQRFGVKHKERIKEMRTDVDVLTLTATPIPRTLNMSMMGVRDLSVIETPPSNRYPI 796 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T +I N I E IER ++ G + +++ ++ ++ V + + L + Sbjct: 797 QTYVIEQNAGTIREAIER---EMARGGQVFYLHNRV-----ADIEKTVSQLSELVPD--A 846 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 IA IHG+M++ E ++ F NG +L+ TT+IE G+D+ + + + +ENA+H GL+QL Sbjct: 847 RIAYIHGQMTENQMEDILYDFVNGEYDVLVTTTIIETGVDIPNVNTLFVENADHMGLSQL 906 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGR+GR ++ +Y P L++ RL +++ TE GF IA DL R G Sbjct: 907 YQLRGRIGRSSRVAYAYFMYQPNKVLTEIGEKRLEAIRDFTELGSGFKIAMRDLSIRGAG 966 Query: 632 EILGIKQSG 640 +LG +QSG Sbjct: 967 NLLGKQQSG 975 >gi|170023947|ref|YP_001720452.1| transcription-repair coupling factor [Yersinia pseudotuberculosis YPIII] gi|169750481|gb|ACA67999.1| transcription-repair coupling factor [Yersinia pseudotuberculosis YPIII] Length = 1148 Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 146/386 (37%), Positives = 213/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q ++ PF T QE AI +L DM Q M R++ GDVG GKT VA+ A AV Sbjct: 591 QLFCQSFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVTNNK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQH++ + + +E+++ ++ LE+ A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMLSRFRSAKEQQVILEQAAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q + ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDLHWHDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVIR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 V ++ L + IAI HG+M + D E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IEKVTQKLAELVPE--ARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPS 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616 A+ IIIE A+H GLAQLHQLRGRVGR + LL P +S ++ RL + + ED Sbjct: 880 ANTIIIERADHLGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSTDAKKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEDQSG 965 >gi|238749649|ref|ZP_04611154.1| Transcription-repair-coupling factor [Yersinia rohdei ATCC 43380] gi|238712304|gb|EEQ04517.1| Transcription-repair-coupling factor [Yersinia rohdei ATCC 43380] Length = 1148 Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 149/409 (36%), Positives = 221/409 (54%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G ++ Q ++ PF T QE AI +L DM + M R++ Sbjct: 568 LLDIYAQRAAKSGFKFKLDRDQYQLFCQSFPFETTPDQEQAINAVLSDMCRPLAMDRLVC 627 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A +V Q ++ P +LAQQH++ + + +E+++ Sbjct: 628 GDVGFGKTEVAMRAAFLSVANNKQVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMMSRFR 687 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 ++ LE+ A G+ IIIGTH L Q +++ L L+IVDE+HRFGV+ + ++ Sbjct: 688 SAKEQQVILEQAAEGKVDIIIGTHKLLQSDLRWKDLGLLIVDEEHRFGVRHKERIKAMRA 747 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I PA R +KT + D ++ R + +L Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDSLVVR-EAIL 803 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ +E N +R L + IAI HG+M + D E VM+ Sbjct: 804 REVLRGGQVYYLFNDVE-----NIEKATQRLAELVPE--ARIAIGHGQMRERDLERVMND 856 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ TT+IE GID+ A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 916 Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 P ++ ++ RL + + ED GF +A DL+ R GE+LG QSG Sbjct: 917 PNPKAMTTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 965 >gi|239630377|ref|ZP_04673408.1| transcription-repair coupling factor [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526660|gb|EEQ65661.1| transcription-repair coupling factor [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 1174 Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 147/431 (34%), Positives = 239/431 (55%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ A E +A ++ L +++ +K G + + K P+ T Q Sbjct: 567 EWQKTKRKVAARIEDIADELIDLYAKREAEK--GFAFGPDDDLQHKFEAEFPYPETPDQL 624 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + K+I DM + M R+L GDVG GKT VAL A A++ G QA I+ P ILAQQH+ Sbjct: 625 RSAKEIKHDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYGKQAAILVPTTILAQQHF 684 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + +K+ + I V +++ ++ ++ + +G I++GTH L + + L L+ Sbjct: 685 DTMKERFADFPIKVGLLSRFQTAHQNKETIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLL 744 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 ++DE+ RFGV+ + ++ Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 745 VIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPI 804 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515 +T ++ N I E IER + G + +++ ++E+ +ER S E Sbjct: 805 QTFVMEQNPGVIREAIER---EMERGGQVFYLHNRVED---------MERTVSQLEELVP 852 Query: 516 -SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 +S+ HG+M++ E+V+ F +G +L+ TT+IE G+D+ +A+ +IIENA+H+GL+ Sbjct: 853 DASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLS 912 Query: 575 QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 QL+QLRGR+GR ++ +Y P L++ + RL +K+ TE GF IA DL R Sbjct: 913 QLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRG 972 Query: 630 EGEILGIKQSG 640 G +LG +Q G Sbjct: 973 AGNLLGKQQHG 983 >gi|197265670|ref|ZP_03165744.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197243925|gb|EDY26545.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 1148 Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+++ + + L A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|254372994|ref|ZP_04988483.1| transcription-repair coupling factor,ATP-dependent [Francisella tularensis subsp. novicida GA99-3549] gi|151570721|gb|EDN36375.1| transcription-repair coupling factor,ATP-dependent [Francisella novicida GA99-3549] Length = 1141 Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 144/386 (37%), Positives = 211/386 (54%), Gaps = 21/386 (5%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 + + P+ T Q SAI D+ +DM M R++ GDVG GKT +A+ A A + Q Sbjct: 589 RFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQ 648 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 I+ P ILAQQHY K NT + +E+IT + +++ E + G IIIGTH Sbjct: 649 VAILVPTTILAQQHYNSFKDRFTNTAVNIEVITRSKTPKAQQQLFEDLKKGTVDIIIGTH 708 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443 L I + L L+I+DE+HRFGV Q+ KL +L M+ATPIPR+L + Sbjct: 709 KLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALR 768 Query: 444 DISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESN 499 D+S I PA R +KT + N I E + R + G + +++ ++E +KK+ Sbjct: 769 DLSIIASPPAKRLSVKTFVKEYDNNIIREAVSRETI---RGGQIFYLYNKVETIQKKKEI 825 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + + R IAI HG+MS+ + + VM FK+ +L+ TT+IE GID+ + Sbjct: 826 LQELFPRL---------RIAIAHGQMSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPN 876 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED- 616 A+ +IIE+A + GLAQLHQLRGRVGR + +L ++K++ RL + N E Sbjct: 877 ANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNEASITKDALKRLEAISNAESL 936 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GEILG +QSG Sbjct: 937 GGGFTLANHDLEIRGAGEILGEEQSG 962 >gi|16760091|ref|NP_455708.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142138|ref|NP_805480.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213425039|ref|ZP_03357789.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|25290813|pir||AI0644 transcription-repair coupling factor (TrcF) STY1256 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502385|emb|CAD08340.1| transcription-repair coupling factor (TrcF) [Salmonella enterica subsp. enterica serovar Typhi] gi|29137767|gb|AAO69329.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 1148 Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+++ + + L A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTADAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|222100017|ref|YP_002534585.1| Transcription-repair coupling factor [Thermotoga neapolitana DSM 4359] gi|221572407|gb|ACM23219.1| Transcription-repair coupling factor [Thermotoga neapolitana DSM 4359] Length = 895 Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 140/407 (34%), Positives = 233/407 (57%), Gaps = 16/407 (3%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 + L L R++ + G + + ++ +K P+ T Q+ I+++L D+S + M R+ Sbjct: 340 VELYLKREEVR---GTLLPGDPELEEKFAETFPYIETPDQQKCIEEVLTDLSSEKPMDRL 396 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 L GD G GKT VAL A AV +G Q ++ P +LA+QHYE K+ + + VE++ Sbjct: 397 LCGDAGVGKTEVALRAAFRAVVSGKQVAVLVPTTVLARQHYENFKERLEPFGVRVELLDS 456 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 + R++ LE + G+ ++IGTHAL + +++ L LVI+DE+ +FGV+Q+ K + Sbjct: 457 SRTLRERKEILEGLKKGEIDVVIGTHALLNERVEFSDLGLVIIDEEQKFGVEQKEKFKKM 516 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 + +VL ++ATPIPRTL + G D+S I P GRKP+ I N +E+++ V Sbjct: 517 RLSVNVLSLSATPIPRTLHMALSGMKDLSVINAPPPGRKPVHVYIAEYN--EELVKGAVV 574 Query: 478 -VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 ++ G + ++ ++EE E V+E + IA+ HG+MS E V+ Sbjct: 575 REVNRGGQVIYVHNRVEELPE-----VLENLKRMFPEL--RIAMAHGKMSRRVMEKVVHE 627 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F +G +L+ TT+IE G+D+ +A+ +I+++A +GLAQL+QLRGRVGR + + LY Sbjct: 628 FYSGNIDVLLCTTIIENGVDIPNANTLIVDDAHRYGLAQLYQLRGRVGRSDRRAFAYFLY 687 Query: 597 HPPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSG 640 + K++ RL VLK G IA +D++ R G++LG++Q G Sbjct: 688 PKGVPKSALERLRVLKAHTGPGSGLQIAMKDMEMRGIGDVLGLEQHG 734 >gi|322616592|gb|EFY13501.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619893|gb|EFY16767.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622461|gb|EFY19306.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629421|gb|EFY26198.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633907|gb|EFY30645.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636838|gb|EFY33541.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641362|gb|EFY38001.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645127|gb|EFY41656.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652291|gb|EFY48647.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655642|gb|EFY51944.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660947|gb|EFY57177.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665467|gb|EFY61655.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667556|gb|EFY63717.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673650|gb|EFY69752.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677576|gb|EFY73640.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679759|gb|EFY75798.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687232|gb|EFY83204.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194018|gb|EFZ79219.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199427|gb|EFZ84520.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323208844|gb|EFZ93782.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210654|gb|EFZ95533.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217818|gb|EGA02533.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323228043|gb|EGA12184.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229621|gb|EGA13744.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232846|gb|EGA16942.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240118|gb|EGA24162.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242895|gb|EGA26916.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323255555|gb|EGA39314.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261591|gb|EGA45168.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266985|gb|EGA50470.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272089|gb|EGA55503.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 1148 Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+++ + + L A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILSEAAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|123442012|ref|YP_001005995.1| transcription-repair coupling factor [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088973|emb|CAL11784.1| transcription-repair coupling factor [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 1148 Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 149/409 (36%), Positives = 221/409 (54%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + + Q ++ PF T QE AI +L DM + M R++ Sbjct: 568 LLDIYAQRAAKSGFKFKFDREQYQLFCQSFPFETTPDQEQAINAVLSDMCRPLAMDRLVC 627 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQH++ + + +E+++ Sbjct: 628 GDVGFGKTEVAMRAAFLAVANNKQVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMMSRFR 687 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 ++ LE+ A G+ IIIGTH L Q +++ L L+IVDE+HRFGV+ + ++ Sbjct: 688 SAKEQQVILEQAAEGKVDIIIGTHKLLQSDLRWQDLGLLIVDEEHRFGVRHKERIKAMRA 747 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I PA R +KT + D ++ R + +L Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDSLVVR-EAIL 803 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ +E N ++ L + IAI HG+M + D E VM+ Sbjct: 804 REILRGGQVYYLYNDVE-----NIEKATQKLAELVPE--ARIAIGHGQMRERDLERVMND 856 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ TT+IE GID+ A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 916 Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 P ++ ++ RL + + ED GF +A DL+ R GE+LG QSG Sbjct: 917 PNPKAMTTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 965 >gi|260768914|ref|ZP_05877848.1| transcription-repair coupling factor [Vibrio furnissii CIP 102972] gi|260616944|gb|EEX42129.1| transcription-repair coupling factor [Vibrio furnissii CIP 102972] Length = 1153 Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 145/383 (37%), Positives = 213/383 (55%), Gaps = 23/383 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI ++ DM Q M R++ GDVG GKT VA+ A A + G Q ++ Sbjct: 599 GFPFEETDDQAMAINAVMSDMCQPKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ ++ L+ +A G+ I++GTH L Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKAILQDVADGKVDIVVGTHKLLS 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L L++VDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 719 SDIKFADLGLLVVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502 I PA R IKT + D VI + VL E G + Y++ Q+E +K ++ Sbjct: 779 IATPPARRMAIKTFV--RQSEDSVIR--EAVLREIMRGGQVYFLHNQVESIDKVAADLEK 834 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 ++ + I + HG+M + + E VM+ F + LL+ TT+IE GIDV A+ Sbjct: 835 LIPE---------ARITVAHGQMRERELERVMNDFYHQRFNLLVCTTIIETGIDVPTANT 885 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---G 617 II++ A+ GLAQLHQLRGRVGR + LL HP ++K++ RL + + ED G Sbjct: 886 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAVKRLEAIASLEDLGAG 945 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F +A DL+ R GE+LG +QSG Sbjct: 946 FTLATHDLEIRGAGELLGDEQSG 968 >gi|161614554|ref|YP_001588519.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161363918|gb|ABX67686.1| hypothetical protein SPAB_02303 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 1148 Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+++ + + L A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|168233095|ref|ZP_02658153.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194470858|ref|ZP_03076842.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194457222|gb|EDX46061.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205332729|gb|EDZ19493.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 1148 Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+++ + + L A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|301067528|ref|YP_003789551.1| transcription-repair coupling factor (superfamily II helicase) [Lactobacillus casei str. Zhang] gi|300439935|gb|ADK19701.1| Transcription-repair coupling factor (superfamily II helicase) [Lactobacillus casei str. Zhang] Length = 1174 Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 147/431 (34%), Positives = 239/431 (55%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ A E +A ++ L +++ +K G + + K P+ T Q Sbjct: 567 EWQKTKRKVAARIEDIADELIDLYAKREAEK--GFAFGPDDDLQHKFEAEFPYPETPDQL 624 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + K+I DM + M R+L GDVG GKT VAL A A++ G QA I+ P ILAQQH+ Sbjct: 625 RSAKEIKHDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYGKQAAILVPTTILAQQHF 684 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + +K+ + I V +++ ++ ++ + +G I++GTH L + + L L+ Sbjct: 685 DTMKERFADFPIKVGLLSRFQTAHQNKETIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLL 744 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 ++DE+ RFGV+ + ++ Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 745 VIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPI 804 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515 +T ++ N I E IER + G + +++ ++E+ +ER S E Sbjct: 805 QTFVMEQNPGVIREAIER---EMERGGQVFYLHNRVED---------MERTVSQLEELVP 852 Query: 516 -SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 +S+ HG+M++ E+V+ F +G +L+ TT+IE G+D+ +A+ +IIENA+H+GL+ Sbjct: 853 DASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLS 912 Query: 575 QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 QL+QLRGR+GR ++ +Y P L++ + RL +K+ TE GF IA DL R Sbjct: 913 QLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRG 972 Query: 630 EGEILGIKQSG 640 G +LG +Q G Sbjct: 973 AGNLLGKQQHG 983 >gi|16764571|ref|NP_460186.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62179736|ref|YP_216153.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167991999|ref|ZP_02573098.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168264274|ref|ZP_02686247.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194446626|ref|YP_002040470.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449956|ref|YP_002045215.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197250617|ref|YP_002146826.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|224584278|ref|YP_002638076.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238910964|ref|ZP_04654801.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|16419734|gb|AAL20145.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62127369|gb|AAX65072.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194405289|gb|ACF65511.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408260|gb|ACF68479.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197214320|gb|ACH51717.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205329787|gb|EDZ16551.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205347253|gb|EDZ33884.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224468805|gb|ACN46635.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261246428|emb|CBG24237.1| transcription-repair coupling factor (TrcF) [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992993|gb|ACY87878.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157757|emb|CBW17249.1| transcription-repair coupling factor (TrcF) [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912204|dbj|BAJ36178.1| transcriptional repressor UlaR [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|322714206|gb|EFZ05777.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323129485|gb|ADX16915.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988107|gb|AEF07090.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 1148 Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+++ + + L A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|116495978|ref|YP_807712.1| transcription-repair coupling factor [Lactobacillus casei ATCC 334] gi|116106128|gb|ABJ71270.1| transcription-repair coupling factor [Lactobacillus casei ATCC 334] Length = 1174 Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 147/431 (34%), Positives = 239/431 (55%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ A E +A ++ L +++ +K G + + K P+ T Q Sbjct: 567 EWQKTKRKVAARIEDIADELIDLYAKREAEK--GFAFGPDDDLQHKFEAEFPYPETPDQL 624 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + K+I DM + M R+L GDVG GKT VAL A A++ G QA I+ P ILAQQH+ Sbjct: 625 RSAKEIKHDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYGKQAAILVPTTILAQQHF 684 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + +K+ + I V +++ ++ ++ + +G I++GTH L + + L L+ Sbjct: 685 DTMKERFADFPIKVGLLSRFQTAHQNKETIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLL 744 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 ++DE+ RFGV+ + ++ Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 745 VIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPI 804 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515 +T ++ N I E IER + G + +++ ++E+ +ER S E Sbjct: 805 QTFVMEQNPGVIREAIER---EMERGGQVFYLHNRVED---------MERTVSQLEELVP 852 Query: 516 -SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 +S+ HG+M++ E+V+ F +G +L+ TT+IE G+D+ +A+ +IIENA+H+GL+ Sbjct: 853 DASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLS 912 Query: 575 QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 QL+QLRGR+GR ++ +Y P L++ + RL +K+ TE GF IA DL R Sbjct: 913 QLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRG 972 Query: 630 EGEILGIKQSG 640 G +LG +Q G Sbjct: 973 AGNLLGKQQHG 983 >gi|207857277|ref|YP_002243928.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206709080|emb|CAR33413.1| transcription-repair coupling factor (TrcF) [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 1148 Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+++ + + L A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|168822320|ref|ZP_02834320.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205341236|gb|EDZ28000.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320086344|emb|CBY96117.1| Transcription-repair-coupling factor TRCF; ATP-dependent helicase mfd [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 1148 Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+++ + + L A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|200390896|ref|ZP_03217507.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199603341|gb|EDZ01887.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 1148 Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+++ + + L A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|213860062|ref|ZP_03385766.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 919 Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 363 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 422 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+++ + + L A G+ I+IGT Sbjct: 423 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 482 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 483 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 542 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 543 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 593 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 594 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 651 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 652 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTADAQKRLEAIASLEDL 711 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 712 GAGFALATHDLEIRGAGELLGEEQSG 737 >gi|332162083|ref|YP_004298660.1| transcription-repair coupling factor [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666313|gb|ADZ42957.1| transcription-repair coupling factor [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 1148 Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 149/409 (36%), Positives = 221/409 (54%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + + Q ++ PF T QE AI +L DM + M R++ Sbjct: 568 LLDIYAQRAAKSGFKFKFDREQYQLFCQSFPFETTPDQEQAINAVLSDMCRPLAMDRLVC 627 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQH++ + + +E+++ Sbjct: 628 GDVGFGKTEVAMRAAFLAVANNKQVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMMSRFR 687 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 ++ LE+ A G+ IIIGTH L Q +++ L L+IVDE+HRFGV+ + ++ Sbjct: 688 SAKEQQVILEQAAEGKVDIIIGTHKLLQSDLRWQDLGLLIVDEEHRFGVRHKERIKAMRA 747 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I PA R +KT + D ++ R + +L Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDSLVVR-EAIL 803 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ +E N ++ L + IAI HG+M + D E VM+ Sbjct: 804 REILRGGQVYYLYNDVE-----NIEKATQKLAELVPE--ARIAIGHGQMRERDLERVMND 856 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ TT+IE GID+ A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 916 Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 P ++ ++ RL + + ED GF +A DL+ R GE+LG QSG Sbjct: 917 PNPKAMTTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 965 >gi|318606131|emb|CBY27629.1| transcription-repair coupling factor [Yersinia enterocolitica subsp. palearctica Y11] Length = 1148 Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 149/409 (36%), Positives = 221/409 (54%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + + Q ++ PF T QE AI +L DM + M R++ Sbjct: 568 LLDIYAQRTAKSGFKFKFDREQYQLFCQSFPFETTPDQEQAINAVLSDMCRPLAMDRLVC 627 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQH++ + + +E+++ Sbjct: 628 GDVGFGKTEVAMRAAFLAVANNKQVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMMSRFR 687 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 ++ LE+ A G+ IIIGTH L Q +++ L L+IVDE+HRFGV+ + ++ Sbjct: 688 SAKEQQVILEQAAEGKVDIIIGTHKLLQSDLRWQDLGLLIVDEEHRFGVRHKERIKAMRA 747 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I PA R +KT + D ++ R + +L Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDSLVVR-EAIL 803 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ +E N ++ L + IAI HG+M + D E VM+ Sbjct: 804 REILRGGQVYYLYNDVE-----NIEKATQKLAELVPE--ARIAIGHGQMRERDLERVMND 856 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ TT+IE GID+ A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 916 Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 P ++ ++ RL + + ED GF +A DL+ R GE+LG QSG Sbjct: 917 PNPKAMTTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 965 >gi|268589233|ref|ZP_06123454.1| transcription-repair coupling factor [Providencia rettgeri DSM 1131] gi|291315491|gb|EFE55944.1| transcription-repair coupling factor [Providencia rettgeri DSM 1131] Length = 1147 Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 147/411 (35%), Positives = 224/411 (54%), Gaps = 23/411 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + + Q+ + PF T QE AI +L DM Q M R++ Sbjct: 567 LLDIYAQRAAKAGFAFKHDKQQYQEFCQGFPFETTPDQEVAINAVLSDMCQPLAMDRLVC 626 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A A+ Q ++ P +LAQQHY+ K N + +E+++ Sbjct: 627 GDVGFGKTEVAMRAAFLAINNNKQVAVLVPTTLLAQQHYDNFKDRFANWPVRIEMLSRFK 686 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +++ + + A G+ I+IGTH L Q + + L L++VDE+HRFGV+ + ++ Sbjct: 687 TAKEQQQIITQTAEGKVDILIGTHKLLQSDLVWKDLGLLVVDEEHRFGVRHKERIKAMRA 746 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I PA R +KT + + D+++ R + +L Sbjct: 747 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VRQYDDLVVR-EAIL 802 Query: 480 SE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534 E G + Y++ +E EK ++ +V + + HG+M + + E VM Sbjct: 803 RETLRGGQVYYLYNDVENIEKAKTRLEELVPE---------ARFVVGHGQMRERELERVM 853 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F + +LI TT+IE GID+ A+ IIIE A+HFGLAQLHQLRGRVGR + L Sbjct: 854 TDFHHQRFNVLICTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYL 913 Query: 595 LY-HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 L HP ++ +++ RL + + ED GF +A DL+ R GE+LG QSG Sbjct: 914 LTPHPKAMTTDAHKRLEAISSLEDLGAGFALATHDLEIRGAGELLGEDQSG 964 >gi|198242225|ref|YP_002215922.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197936741|gb|ACH74074.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326623670|gb|EGE30015.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 1148 Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+++ + + L A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|168239121|ref|ZP_02664179.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194738344|ref|YP_002114221.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194713846|gb|ACF93067.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288100|gb|EDY27487.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 1148 Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+++ + + L A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|296102868|ref|YP_003613014.1| transcription-repair coupling factor [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057327|gb|ADF62065.1| transcription-repair coupling factor [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 1148 Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 146/386 (37%), Positives = 214/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQH++ + N + +E+++ + + LE+ G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFRSTKEQTQILEQAREGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDNLVVR-EAILREVLRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + +R L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAADRLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEDQSG 965 >gi|204930833|ref|ZP_03221706.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320292|gb|EDZ05496.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 1148 Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+++ + + L A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|146306624|ref|YP_001187089.1| transcription-repair coupling factor [Pseudomonas mendocina ymp] gi|145574825|gb|ABP84357.1| transcription-repair coupling factor [Pseudomonas mendocina ymp] Length = 1145 Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 141/380 (37%), Positives = 213/380 (56%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q++AI + DM M R++ GDVG GKT VA+ A AV +G Q ++ Sbjct: 595 GFPFEETPDQQAAIDAVRADMLAGKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGKQVAVL 654 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A++++A G+ I+IGTH L Q Sbjct: 655 VPTTLLAQQHYNSFRDRFADWPVKVEVMSRFKSAKEVEGAVQQLAEGKVDIVIGTHKLLQ 714 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D ++++ L LVI+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 715 DDVKFHNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSI 774 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R ++T ++ N+ + E L L G + Y++ ++ +K S +V Sbjct: 775 IATPPARRLSVRTFVMEENK-PTIKEALLRELLRGGQVYYLHNDVKTIDKCASELAELVP 833 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + I + HG+M + + E VM F + +L+A+T+IE GIDV A+ III Sbjct: 834 E---------ARIGVGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIII 884 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL P ++ ++ RL + +D GF++ Sbjct: 885 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKSMTDDAQKRLEAIAGAQDLGAGFIL 944 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 945 ATHDLEIRGAGELLGDGQSG 964 >gi|55980858|ref|YP_144155.1| transcription-repair coupling factor [Thermus thermophilus HB8] gi|55772271|dbj|BAD70712.1| transcription-repair coupling factor [Thermus thermophilus HB8] Length = 978 Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 147/428 (34%), Positives = 233/428 (54%), Gaps = 19/428 (4%) Query: 219 EWTSPARERLAYD-ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EW A+ER D E LAG++ +L +++ P E + + P+ T Q Sbjct: 391 EWQR-AKERARKDVEELAGRLLVLQAKRKATPGRAFPPLPEWD--PLVEKGFPYELTPDQ 447 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + A++++L+D+ + M R++ GDVG GKT VAL A V G Q + P +LA+QH Sbjct: 448 KRALEEVLRDLESPHPMDRLVSGDVGFGKTEVALRAAHRVVGHGAQVAFLVPTTLLAEQH 507 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 + ++ Q + V +++ P L+ +A G I+IGTH L Q+ +++ L L Sbjct: 508 GKTFRERFQGLPVRVAVLSRFTPPKEEEAILKGLAEGTVDIVIGTHRLLQEDVRFRDLGL 567 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +IVDE+HRFGV Q+ ++ + L ++ATPIPRTL +G D+S I P GRKP Sbjct: 568 LIVDEEHRFGVAQKERIRELKAEVDTLYLSATPIPRTLYSALVGLKDLSSIQTPPPGRKP 627 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-- 515 IKT + P + + V E + L G K +++ ++ + +E E+ Sbjct: 628 IKTFLAPFDPL-LVREAILFELERGGKVFYVHDRV---------ASIEARRRFLENLVPE 677 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + I ++HG+M + E M F G +L+ATT+IE G+DV +A+ I+IE A+ GLA Sbjct: 678 ARIGVVHGQMPESLIEETMLLFAEGAYDVLLATTIIEAGLDVPEANTILIERADRLGLAT 737 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632 L+QLRGRVGR EE + L + P L++ + RL+ + + D G L+AE D++ R G Sbjct: 738 LYQLRGRVGRREEEAYAYLFHPPRLTEAAEKRLAAIADLSDLGSGHLLAERDMEIRGVGN 797 Query: 633 ILGIKQSG 640 +LG +Q G Sbjct: 798 LLGPEQHG 805 >gi|56413798|ref|YP_150873.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362721|ref|YP_002142358.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128055|gb|AAV77561.1| transcription-repair coupling factor (TrcF) [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094198|emb|CAR59702.1| transcription-repair coupling factor (TrcF) [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 1148 Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+++ + + L A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965 >gi|227533044|ref|ZP_03963093.1| transcription-repair coupling factor (TRCF) [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189445|gb|EEI69512.1| transcription-repair coupling factor (TRCF) [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 1174 Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 147/431 (34%), Positives = 239/431 (55%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ A E +A ++ L +++ +K G + + K P+ T Q Sbjct: 567 EWQKTKRKVAARIEDIADELIDLYAKREAEK--GFAFGPDDDLQHKFEAEFPYPETPDQL 624 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + K+I DM + M R+L GDVG GKT VAL A A++ G QA I+ P ILAQQH+ Sbjct: 625 RSAKEIKHDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYGKQAAILVPTTILAQQHF 684 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + +K+ + I V +++ ++ ++ + +G I++GTH L + + L L+ Sbjct: 685 DTMKERFADFPIKVGLLSRFQTPHQNKETIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLL 744 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 ++DE+ RFGV+ + ++ Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 745 VIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPI 804 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515 +T ++ N I E IER + G + +++ ++E+ +ER S E Sbjct: 805 QTFVMEQNPGVIREAIER---EMERGGQVFYLHNRVED---------MERTVSQLEELVP 852 Query: 516 -SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 +S+ HG+M++ E+V+ F +G +L+ TT+IE G+D+ +A+ +IIENA+H+GL+ Sbjct: 853 DASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLS 912 Query: 575 QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 QL+QLRGR+GR ++ +Y P L++ + RL +K+ TE GF IA DL R Sbjct: 913 QLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRG 972 Query: 630 EGEILGIKQSG 640 G +LG +Q G Sbjct: 973 AGNLLGKQQHG 983 >gi|315180610|gb|ADT87524.1| transcription-repair coupling factor [Vibrio furnissii NCTC 11218] Length = 1125 Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 145/383 (37%), Positives = 213/383 (55%), Gaps = 23/383 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI ++ DM Q M R++ GDVG GKT VA+ A A + G Q ++ Sbjct: 571 GFPFEETDDQAMAINAVMSDMCQPKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 630 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ ++ L+ +A G+ I++GTH L Sbjct: 631 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKAILQDVADGKVDIVVGTHKLLS 690 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L L++VDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 691 SDIKFADLGLLVVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 750 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502 I PA R IKT + D VI + VL E G + Y++ Q+E +K ++ Sbjct: 751 IATPPARRMAIKTFV--RQSEDSVIR--EAVLREIMRGGQVYFLHNQVESIDKVAADLEK 806 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 ++ + I + HG+M + + E VM+ F + LL+ TT+IE GIDV A+ Sbjct: 807 LIPE---------ARITVAHGQMRERELERVMNDFYHQRFNLLVCTTIIETGIDVPTANT 857 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---G 617 II++ A+ GLAQLHQLRGRVGR + LL HP ++K++ RL + + ED G Sbjct: 858 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAVKRLEAIASLEDLGAG 917 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F +A DL+ R GE+LG +QSG Sbjct: 918 FTLATHDLEIRGAGELLGDEQSG 940 >gi|94499512|ref|ZP_01306049.1| transcription-repair coupling factor [Oceanobacter sp. RED65] gi|94428266|gb|EAT13239.1| transcription-repair coupling factor [Oceanobacter sp. RED65] Length = 1143 Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 141/383 (36%), Positives = 218/383 (56%), Gaps = 23/383 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + PF T Q+ AI ++ DM + N M R++ GDVG GKT VAL A A + G Q ++ Sbjct: 593 DFPFEETADQKQAINAVVTDMMKANPMDRLVCGDVGFGKTEVALRAAFLAAQNGKQVAVL 652 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + + I VE I+ A++ AL+ + G I++GTH L Q Sbjct: 653 VPTTLLAQQHFETFRDRFADWPIKVEGISRFKTGANKTAALKGLEDGTTDIVVGTHKLLQ 712 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++ L L+I+DE+HRFGVQQ+ ++ +L MTATPIPRTL + G D+S Sbjct: 713 KDVKFKDLGLLIIDEEHRFGVQQKERIKALRADVDILTMTATPIPRTLNMAMSGVRDLSI 772 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502 I PA R +KT + + DE + + + VL E G + Y++ +++ EK + Sbjct: 773 IATPPARRLAVKTF---VKKWDENLVK-EAVLREILRGGQVYYLHNEVKTIEKTAEDLAK 828 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 ++ + I + HG+M++ ESVM F + +L+ TT++E GIDV +A+ Sbjct: 829 LIP---------DARIGVAHGQMTERQLESVMSDFYHKRFNVLVCTTIVETGIDVPNANT 879 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---G 617 I++E A+ FGLAQLHQLRGRVGR + L+ ++K++ RL + + +D G Sbjct: 880 IVLERADKFGLAQLHQLRGRVGRSHHQAYAYLMTPIEKKITKDAEKRLDAISHAQDLGAG 939 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F++A DL+ R GE+LG +QSG Sbjct: 940 FMLATHDLEIRGAGELLGEEQSG 962 >gi|227015821|gb|ACP17918.1| putative transcription-repair coupling factor [Pseudomonas nitroreducens] Length = 1154 Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 141/380 (37%), Positives = 216/380 (56%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q++AI+ ++ DM + M R++ GDVG GKT VA+ A AV +G Q ++ Sbjct: 603 GFPFEETPDQQTAIEAVVADMLAEKPMDRLVCGDVGFGKTEVAMRAAFVAVHSGRQVAVL 662 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A+ ++A G+ I+IGTH L Q Sbjct: 663 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVEGAVGQLAEGKVDIVIGTHKLLQ 722 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D +++ L LVI+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 723 DDVKFKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSI 782 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R ++T ++ + + E L L G + Y++ +++ EK + +V Sbjct: 783 IATPPARRLSVRTFVMEEQK-SVIKEALLRELLRGGQVYFLHNEVKTIEKCARDLAELVP 841 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + I I HG+M++ + E VM F + +L+A+T+IE GIDV A+ I+I Sbjct: 842 E---------ARIGIGHGQMNERELERVMSDFYHKRFNVLVASTIIETGIDVPSANTILI 892 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL P ++ ++ RL + N +D GF++ Sbjct: 893 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQMTPDAEKRLEAIANAQDLGAGFVL 952 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 953 ATHDLEIRGAGELLGEGQSG 972 >gi|332288167|ref|YP_004419019.1| transcription-repair coupling factor [Gallibacterium anatis UMN179] gi|330431063|gb|AEC16122.1| transcription-repair coupling factor [Gallibacterium anatis UMN179] Length = 1147 Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 147/385 (38%), Positives = 217/385 (56%), Gaps = 17/385 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ PF T Q+ AI ++ DM Q M R++ GDVG GKT VA+ A AV Sbjct: 588 QQFADTFPFEETYDQQMAINAVIGDMCQAKPMDRLVCGDVGFGKTEVAMRAAFLAVMNHK 647 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + VE+++ ++ L + G+ I+IGT Sbjct: 648 QVAVLVPTTLLAQQHYDNFRDRFANLPVNVEVLSRFKTSKEQKNVLTLVKEGKIDILIGT 707 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q + ++ L L+I+DE+HRFGV+Q+ K+ Q T +L +TATPIPRTL + G Sbjct: 708 HKLLQGDVDFHDLGLLIIDEEHRFGVRQKEKIKQLRTNIDILTLTATPIPRTLNMAMNGI 767 Query: 443 IDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500 D+S I+ PA R IKT + ++ + E I L+ +L G + Y++ + + Sbjct: 768 RDLSIISTPPARRLVIKTFVREQDKRVVREAI--LREIL-RGGQVYYLHNDV-----ATI 819 Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560 ++ E+ L + I I HG+M + + E VM F + +L+ TT+IE GID+ A Sbjct: 820 QNCAEKLVELVPE--ARIGIGHGQMRERELERVMTDFYHQRFNVLVCTTIIETGIDIPSA 877 Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTR---LSVLKNTE 615 + IIIE A+HFGLAQLHQLRGRVGR + LL P ++K++ R LS L N Sbjct: 878 NTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLAPPAKLMTKDAQKRLEALSSLDNLG 937 Query: 616 DGFLIAEEDLKQRKEGEILGIKQSG 640 GF++A DL+ R GE+LG +QSG Sbjct: 938 AGFVLATHDLEIRGAGELLGDEQSG 962 >gi|307278656|ref|ZP_07559726.1| transcription-repair coupling factor [Enterococcus faecalis TX0860] gi|306504716|gb|EFM73916.1| transcription-repair coupling factor [Enterococcus faecalis TX0860] Length = 1189 Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 155/463 (33%), Positives = 250/463 (53%), Gaps = 29/463 (6%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + LL ++ +K P + ++ P+S T Q Sbjct: 580 EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 637 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM + M R+L GDVG GKT VAL A AV Q + P ILAQQHY Sbjct: 638 RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I++ + + + +++ + + + +E+I HGQ I+IGTH L I + L L+ Sbjct: 698 ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 758 IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E IER ++ + +++ +++ E+K +++V Sbjct: 818 QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 865 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA HG+M+++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 925 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 926 TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 985 Query: 630 EGEILGIKQSGMPKFLIAQP-ELHDSLLE--IARKDAKHILTQ 669 G +LG +Q G F+ + +++ +L +ARK K+I Q Sbjct: 986 AGNLLGAQQHG---FIDSVGFDMYSQMLSEAVARKQGKNIQDQ 1025 >gi|327534054|gb|AEA92888.1| transcription-repair coupling factor [Enterococcus faecalis OG1RF] Length = 1189 Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 155/463 (33%), Positives = 250/463 (53%), Gaps = 29/463 (6%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + LL ++ +K P + ++ P+S T Q Sbjct: 580 EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 637 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM + M R+L GDVG GKT VAL A AV Q + P ILAQQHY Sbjct: 638 RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I++ + + + +++ + + + +E+I HGQ I+IGTH L I + L L+ Sbjct: 698 ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 758 IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E IER ++ + +++ +++ E+K +++V Sbjct: 818 QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 865 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA HG+M+++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 925 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 926 TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 985 Query: 630 EGEILGIKQSGMPKFLIAQP-ELHDSLLE--IARKDAKHILTQ 669 G +LG +Q G F+ + +++ +L +ARK K+I Q Sbjct: 986 AGNLLGAQQHG---FIDSVGFDMYSQMLSEAVARKQGKNIQDQ 1025 >gi|307276446|ref|ZP_07557569.1| transcription-repair coupling factor [Enterococcus faecalis TX2134] gi|306506926|gb|EFM76073.1| transcription-repair coupling factor [Enterococcus faecalis TX2134] Length = 1189 Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 155/463 (33%), Positives = 250/463 (53%), Gaps = 29/463 (6%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + LL ++ +K P + ++ P+S T Q Sbjct: 580 EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 637 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM + M R+L GDVG GKT VAL A AV Q + P ILAQQHY Sbjct: 638 RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I++ + + + +++ + + + +E+I HGQ I+IGTH L I + L L+ Sbjct: 698 ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 758 IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E IER ++ + +++ +++ E+K +++V Sbjct: 818 QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 865 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA HG+M+++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 925 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 926 TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 985 Query: 630 EGEILGIKQSGMPKFLIAQP-ELHDSLLE--IARKDAKHILTQ 669 G +LG +Q G F+ + +++ +L +ARK K+I Q Sbjct: 986 AGNLLGAQQHG---FIDSVGFDMYSQMLSEAVARKQGKNIQDQ 1025 >gi|312904634|ref|ZP_07763789.1| transcription-repair coupling factor [Enterococcus faecalis TX0635] gi|310631986|gb|EFQ15269.1| transcription-repair coupling factor [Enterococcus faecalis TX0635] gi|315160777|gb|EFU04794.1| transcription-repair coupling factor [Enterococcus faecalis TX0645] gi|315579376|gb|EFU91567.1| transcription-repair coupling factor [Enterococcus faecalis TX0630] Length = 1189 Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 155/463 (33%), Positives = 250/463 (53%), Gaps = 29/463 (6%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + LL ++ +K P + ++ P+S T Q Sbjct: 580 EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 637 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM + M R+L GDVG GKT VAL A AV Q + P ILAQQHY Sbjct: 638 RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I++ + + + +++ + + + +E+I HGQ I+IGTH L I + L L+ Sbjct: 698 ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 758 IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E IER ++ + +++ +++ E+K +++V Sbjct: 818 QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 865 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA HG+M+++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 925 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 926 TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 985 Query: 630 EGEILGIKQSGMPKFLIAQP-ELHDSLLE--IARKDAKHILTQ 669 G +LG +Q G F+ + +++ +L +ARK K+I Q Sbjct: 986 AGNLLGAQQHG---FIDSVGFDMYSQMLSEAVARKQGKNIQDQ 1025 >gi|293382707|ref|ZP_06628632.1| transcription-repair coupling factor [Enterococcus faecalis R712] gi|293388111|ref|ZP_06632638.1| transcription-repair coupling factor [Enterococcus faecalis S613] gi|307268510|ref|ZP_07549885.1| transcription-repair coupling factor [Enterococcus faecalis TX4248] gi|312908603|ref|ZP_07767545.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO 512] gi|312909249|ref|ZP_07768106.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO 516] gi|291079867|gb|EFE17231.1| transcription-repair coupling factor [Enterococcus faecalis R712] gi|291082487|gb|EFE19450.1| transcription-repair coupling factor [Enterococcus faecalis S613] gi|306515171|gb|EFM83711.1| transcription-repair coupling factor [Enterococcus faecalis TX4248] gi|310625390|gb|EFQ08673.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO 512] gi|311290491|gb|EFQ69047.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO 516] gi|315032977|gb|EFT44909.1| transcription-repair coupling factor [Enterococcus faecalis TX0017] gi|315036610|gb|EFT48542.1| transcription-repair coupling factor [Enterococcus faecalis TX0027] gi|315147120|gb|EFT91136.1| transcription-repair coupling factor [Enterococcus faecalis TX4244] Length = 1189 Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 155/463 (33%), Positives = 250/463 (53%), Gaps = 29/463 (6%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + LL ++ +K P + ++ P+S T Q Sbjct: 580 EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 637 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM + M R+L GDVG GKT VAL A AV Q + P ILAQQHY Sbjct: 638 RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I++ + + + +++ + + + +E+I HGQ I+IGTH L I + L L+ Sbjct: 698 ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 758 IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E IER ++ + +++ +++ E+K +++V Sbjct: 818 QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 865 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA HG+M+++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 925 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 926 TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 985 Query: 630 EGEILGIKQSGMPKFLIAQP-ELHDSLLE--IARKDAKHILTQ 669 G +LG +Q G F+ + +++ +L +ARK K+I Q Sbjct: 986 AGNLLGAQQHG---FIDSVGFDMYSQMLSEAVARKQGKNIQDQ 1025 >gi|332534806|ref|ZP_08410631.1| transcription-repair coupling factor [Pseudoalteromonas haloplanktis ANT/505] gi|332035770|gb|EGI72256.1| transcription-repair coupling factor [Pseudoalteromonas haloplanktis ANT/505] Length = 1137 Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 153/411 (37%), Positives = 224/411 (54%), Gaps = 23/411 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + + G ++ ++ + PF T Q +AI+ +L DM K M R++ Sbjct: 557 LLDIYAQRQAKPGNKFTLDAPAYRQFSDSFPFEETDDQRNAIEAVLGDMQSKQAMDRLVC 616 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q I+ P +LAQQHYE K + I V +++ Sbjct: 617 GDVGFGKTEVAMRAAFVAVNDDKQVAILVPTTLLAQQHYENFKDRFADFPIEVGVLSRFN 676 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 ++ LE++A+G+ I+IGTH L Q I++ L L+IVDE+HRFGV+Q+ K+ Sbjct: 677 STKEQKDTLEKMANGKLDIVIGTHKLIQQDIKFNDLGLLIVDEEHRFGVRQKEKIKALRA 736 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I PA R +KT + R E+I + VL Sbjct: 737 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFV--RQRDVELIR--EAVL 792 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVM 534 E G + Y++ +E +ER + +S+ HG+M + + E +M Sbjct: 793 REIKRGGQVYFLHNNVE---------TIERVAQEISEWVPEASVTTAHGQMREQELEQIM 843 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F + +L+ TT+IE GIDV A+ II++ A+ GLAQLHQLRGRVGR + L Sbjct: 844 TDFYHQKYNVLVCTTIIETGIDVPTANTIIMDRADKLGLAQLHQLRGRVGRSHHQAYAYL 903 Query: 595 LYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 L P LSK++ RL +++ ED GF +A DL+ R GE+LG QSG Sbjct: 904 LTGDPKALSKDASKRLQAIESLEDLGAGFALATHDLEIRGAGELLGDDQSG 954 >gi|315165851|gb|EFU09868.1| transcription-repair coupling factor [Enterococcus faecalis TX1302] Length = 1189 Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + LL ++ +K P + ++ P+S T Q Sbjct: 580 EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 637 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM + M R+L GDVG GKT VAL A AV Q + P ILAQQHY Sbjct: 638 RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I++ + + + +++ + + + +E+I HGQ I+IGTH L I + L L+ Sbjct: 698 ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 758 IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E IER ++ + +++ +++ E+K +++V Sbjct: 818 QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 865 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA HG+M+++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 925 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 926 TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 985 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669 G +LG +Q G + +++ +L +ARK K+I Q Sbjct: 986 AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1025 >gi|307274221|ref|ZP_07555429.1| transcription-repair coupling factor [Enterococcus faecalis TX0855] gi|306509183|gb|EFM78245.1| transcription-repair coupling factor [Enterococcus faecalis TX0855] gi|315151127|gb|EFT95143.1| transcription-repair coupling factor [Enterococcus faecalis TX0012] Length = 1189 Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 155/463 (33%), Positives = 250/463 (53%), Gaps = 29/463 (6%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + LL ++ +K P + ++ P+S T Q Sbjct: 580 EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 637 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM + M R+L GDVG GKT VAL A AV Q + P ILAQQHY Sbjct: 638 RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I++ + + + +++ + + + +E+I HGQ I+IGTH L I + L L+ Sbjct: 698 ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 758 IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E IER ++ + +++ +++ E+K +++V Sbjct: 818 QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 865 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA HG+M+++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 925 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 926 TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 985 Query: 630 EGEILGIKQSGMPKFLIAQP-ELHDSLLE--IARKDAKHILTQ 669 G +LG +Q G F+ + +++ +L +ARK K+I Q Sbjct: 986 AGNLLGAQQHG---FIDSVGFDMYSQMLSEAVARKQGKNIQDQ 1025 >gi|315172643|gb|EFU16660.1| transcription-repair coupling factor [Enterococcus faecalis TX1346] Length = 1189 Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 155/463 (33%), Positives = 250/463 (53%), Gaps = 29/463 (6%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + LL ++ +K P + ++ P+S T Q Sbjct: 580 EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 637 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM + M R+L GDVG GKT VAL A AV Q + P ILAQQHY Sbjct: 638 RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I++ + + + +++ + + + +E+I HGQ I+IGTH L I + L L+ Sbjct: 698 ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 758 IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E IER ++ + +++ +++ E+K +++V Sbjct: 818 QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 865 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA HG+M+++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 925 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 926 TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 985 Query: 630 EGEILGIKQSGMPKFLIAQP-ELHDSLLE--IARKDAKHILTQ 669 G +LG +Q G F+ + +++ +L +ARK K+I Q Sbjct: 986 AGNLLGAQQHG---FIDSVGFDMYSQMLSEAVARKQGKNIQDQ 1025 >gi|312901071|ref|ZP_07760360.1| transcription-repair coupling factor [Enterococcus faecalis TX0470] gi|311291817|gb|EFQ70373.1| transcription-repair coupling factor [Enterococcus faecalis TX0470] Length = 1189 Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + LL ++ +K P + ++ P+S T Q Sbjct: 580 EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 637 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM + M R+L GDVG GKT VAL A AV Q + P ILAQQHY Sbjct: 638 RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I++ + + + +++ + + + +E+I HGQ I+IGTH L I + L L+ Sbjct: 698 ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 758 IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E IER ++ + +++ +++ E+K +++V Sbjct: 818 QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 865 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA HG+M+++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 925 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 926 TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 985 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669 G +LG +Q G + +++ +L +ARK K+I Q Sbjct: 986 AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1025 >gi|255971757|ref|ZP_05422343.1| transcription-repair coupling factor [Enterococcus faecalis T1] gi|257421547|ref|ZP_05598537.1| transcription-repair coupling factor [Enterococcus faecalis X98] gi|255962775|gb|EET95251.1| transcription-repair coupling factor [Enterococcus faecalis T1] gi|257163371|gb|EEU93331.1| transcription-repair coupling factor [Enterococcus faecalis X98] gi|323479470|gb|ADX78909.1| transcription-repair coupling factor [Enterococcus faecalis 62] Length = 1179 Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + LL ++ +K P + ++ P+S T Q Sbjct: 570 EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 627 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM + M R+L GDVG GKT VAL A AV Q + P ILAQQHY Sbjct: 628 RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I++ + + + +++ + + + +E+I HGQ I+IGTH L I + L L+ Sbjct: 688 ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 748 IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E IER ++ + +++ +++ E+K +++V Sbjct: 808 QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 855 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA HG+M+++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 915 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 916 TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 975 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669 G +LG +Q G + +++ +L +ARK K+I Q Sbjct: 976 AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1015 >gi|332184209|gb|AEE26463.1| Transcription-repair coupling factor [Francisella cf. novicida 3523] Length = 1142 Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 144/382 (37%), Positives = 210/382 (54%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q AI D+ +DM M R++ GDVG GKT +A+ A A + Q I+ Sbjct: 593 DFPYEETPDQLLAINDVFKDMISTKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQVAIL 652 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHY K NT + +E+IT + +++ E + G IIIGTH L Sbjct: 653 VPTTILAQQHYNSFKDRFTNTAVNIEVITRSKTPKAQQQLFENLKKGTVDIIIGTHKLIS 712 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I + L L+I+DE+HRFGV Q+ KL +L M+ATPIPR+L + D+S Sbjct: 713 SKIDFKNLGLLIIDEEHRFGVAQKEKLKALKAEIDILTMSATPIPRSLSMAFSALRDLSI 772 Query: 448 ITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSV 503 I PA R +KT + N I E + R + G + +++ ++E +KK+ + + Sbjct: 773 IASPPAKRLSVKTFVKEYDNNIIREAVSRETI---RGGQIFYLYNKVETIQKKKEILQEL 829 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 R IAI HG+MS+ + + VM FK+ +L+ TT+IE GID+ +A+ + Sbjct: 830 FPRL---------RIAIAHGQMSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPNANTL 880 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GF 618 IIE+A + GLAQLHQLRGRVGR + +L ++K++ RL + NTE GF Sbjct: 881 IIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNEASITKDALKRLEAISNTESLGGGF 940 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GEILG +QSG Sbjct: 941 TLANHDLEIRGAGEILGEEQSG 962 >gi|254427874|ref|ZP_05041581.1| transcription-repair coupling factor [Alcanivorax sp. DG881] gi|196194043|gb|EDX89002.1| transcription-repair coupling factor [Alcanivorax sp. DG881] Length = 1159 Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 138/379 (36%), Positives = 212/379 (55%), Gaps = 17/379 (4%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 PF T Q++AI ++ DM M R++ GDVG GKT VA+ A AVE Q ++ Sbjct: 603 FPFEETPDQQAAIASVVADMQSSQPMDRLVCGDVGFGKTEVAMRAAFVAVENQTQVAVLV 662 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQHYE + + +E+++ + + L+R+ G+ I++GTH L Q+ Sbjct: 663 PTTLLAQQHYESFTDRFADWPVNIEVLSRFRSAKEKTQVLQRLKEGKVDILVGTHQLLQE 722 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 ++ + L L+IVDE+HRFGV+ + +L Q +L +TATPIPRTL + G DIS I Sbjct: 723 TVAFDNLGLIIVDEEHRFGVRHKERLKQMRAECDILTLTATPIPRTLNMAMSGMRDISII 782 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVER 506 P R +KT + N + E L L G + Y++ I+ EK ++ R +V Sbjct: 783 ATPPQKRLSVKTFVQQHNDT-AIKEALLRELLRGGQVYYLHNDIDTMEKTAADIRKLVP- 840 Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 + + I HG+M + + E+VM F + +L++TT+IE GIDV A+ III+ Sbjct: 841 --------DARVGIAHGQMRERELEAVMSDFYHRRFNVLVSTTIIETGIDVPSANTIIID 892 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIA 621 A+ GLAQLHQLRGRVGR + L+ P ++K++ RL ++ D GF++A Sbjct: 893 RADKLGLAQLHQLRGRVGRSHHQAYAYLITPSPKVMTKDAIKRLEAIEQATDLGAGFMLA 952 Query: 622 EEDLKQRKEGEILGIKQSG 640 +D++ R GE+LG +Q G Sbjct: 953 SQDMEIRGAGELLGEEQHG 971 >gi|227520043|ref|ZP_03950092.1| transcription-repair coupling factor [Enterococcus faecalis TX0104] gi|227072591|gb|EEI10554.1| transcription-repair coupling factor [Enterococcus faecalis TX0104] Length = 1189 Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 155/463 (33%), Positives = 250/463 (53%), Gaps = 29/463 (6%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + LL ++ +K P + ++ P+S T Q Sbjct: 580 EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 637 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM + M R+L GDVG GKT VAL A AV Q + P ILAQQHY Sbjct: 638 RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I++ + + + +++ + + + +E+I HGQ I+IGTH L I + L L+ Sbjct: 698 ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 758 IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E IER ++ + +++ +++ E+K +++V Sbjct: 818 QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 865 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA HG+M+++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 925 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 926 TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 985 Query: 630 EGEILGIKQSGMPKFLIAQP-ELHDSLLE--IARKDAKHILTQ 669 G +LG +Q G F+ + +++ +L +ARK K+I Q Sbjct: 986 AGNLLGAQQHG---FIDSVGFDMYSQMLSEAVARKQGKNIQDQ 1025 >gi|320547719|ref|ZP_08042004.1| transcription-repair coupling factor [Streptococcus equinus ATCC 9812] gi|320447794|gb|EFW88552.1| transcription-repair coupling factor [Streptococcus equinus ATCC 9812] Length = 1165 Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 164/469 (34%), Positives = 252/469 (53%), Gaps = 33/469 (7%) Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266 N +++ R K + S E +A D+LL L R Q K G + + + ++ Sbjct: 554 NKLNDGRFQKTKQKVSKQVEDIA-DDLLK----LYAERSQMK---GFAFSPDDDLQREFD 605 Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 + + T+ Q +IK+I DM + M R+L GDVG GKT VA+ A AV Q + Sbjct: 606 DDFAYVETEDQLRSIKEIKHDMEEAKPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAV 665 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 + P +LAQQH+ + N + V +++ + + + LE++ GQ IIIGTH L Sbjct: 666 LVPTTVLAQQHFTNFSERFDNYPVEVAVLSRFQSKKEQNETLEKLKQGQVDIIIGTHRLL 725 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 +++ L L+I+DE+ RFGV+ + KL + T VL +TATPIPRTL ++ LG D+S Sbjct: 726 SKDVEFADLGLIIIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLS 785 Query: 447 KITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRS 502 I P R P++T ++ N I E I R + G + +++ +++ ++K S + Sbjct: 786 VIETPPTNRYPVQTYVLETNPGLIREAIIR---EMDRGGQVFYVYNRVDTIDQKVSELQE 842 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 +V +SI +HG+MS+I E+ + F G +L+ATT+IE G+D+ + + Sbjct: 843 LVPE---------ASIGFVHGQMSEIQLENTLMDFIEGVYDVLVATTIIETGVDISNVNT 893 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DG 617 + IENA+H GL+ L+QLRGRVGR I+ L+Y P L++ S RL +K TE G Sbjct: 894 LFIENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKNLTEVSEKRLDAIKGFTELGSG 953 Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAK 664 F IA DL R G ILG QSG + E++ LLE IA+K K Sbjct: 954 FKIAMRDLSIRGAGNILGASQSGFIDSV--GFEMYSQLLEEAIAKKQGK 1000 >gi|315026785|gb|EFT38717.1| transcription-repair coupling factor [Enterococcus faecalis TX2137] Length = 1189 Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 155/463 (33%), Positives = 250/463 (53%), Gaps = 29/463 (6%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + LL ++ +K P + ++ P+S T Q Sbjct: 580 EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 637 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM + M R+L GDVG GKT VAL A AV Q + P ILAQQHY Sbjct: 638 RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I++ + + + +++ + + + +E+I HGQ I+IGTH L I + L L+ Sbjct: 698 ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 758 IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E IER ++ + +++ +++ E+K +++V Sbjct: 818 QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 865 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA HG+M+++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 925 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 926 TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 985 Query: 630 EGEILGIKQSGMPKFLIAQP-ELHDSLLE--IARKDAKHILTQ 669 G +LG +Q G F+ + +++ +L +ARK K+I Q Sbjct: 986 AGNLLGAQQHG---FIDSVGFDMYSQMLSEAVARKQGKNIQDQ 1025 >gi|262281636|ref|ZP_06059405.1| transcription-repair coupling factor [Streptococcus sp. 2_1_36FAA] gi|262262090|gb|EEY80787.1| transcription-repair coupling factor [Streptococcus sp. 2_1_36FAA] Length = 1167 Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 151/409 (36%), Positives = 230/409 (56%), Gaps = 25/409 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T+ Q +I++I +DM K M R+L GDVG GKT VA+ A AV Q I+ Sbjct: 611 DFPYVETEDQLRSIQEIKKDMESKQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAIL 670 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY K+ + + V++++ +A + + LE + GQ IIIGTH L Sbjct: 671 VPTTVLAQQHYTNFKERFNDFAVNVDVLSRFRTKAEQNETLEGLKKGQVDIIIGTHRLLS 730 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++ L L+++DE+ RFGV+ + KL + T VL +TATPIPRTL ++ LG D+S Sbjct: 731 QDVEFADLGLIVIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSV 790 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSV 503 I P R P++T ++ N I + I R + G + Y++ +++ E+K + + + Sbjct: 791 IETPPTNRYPVQTYVLESNPTIIRDAILR---EIDRGGQVYYLYNKVDTIEQKVAELKEL 847 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + N I +HG+MS+I E+ + F NG +L+ TT+IE G+D+ +A+ + Sbjct: 848 IPEAN---------IGYVHGQMSEIRLENTLIDFINGEYDVLVTTTIIETGVDIPNANTL 898 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGF 618 IENA+H GL+ L+QLRGRVGR I+ +Y P L++ + RL +K TE GF Sbjct: 899 FIENADHMGLSTLYQLRGRVGRSNRIAYAYFMYRPDKNLTEVAEKRLEAIKGFTELGSGF 958 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKH 665 IA DL R G ILG QSG + E++ LLE IA+K K Sbjct: 959 KIAMRDLSIRGAGNILGSSQSGFIDSV--GFEMYSQLLEEAIAKKQGKE 1005 >gi|46198841|ref|YP_004508.1| transcription-repair coupling factor [Thermus thermophilus HB27] gi|46196464|gb|AAS80881.1| transcription-repair coupling factor [Thermus thermophilus HB27] Length = 978 Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 147/428 (34%), Positives = 233/428 (54%), Gaps = 19/428 (4%) Query: 219 EWTSPARERLAYD-ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EW A+E+ D E LAG++ +L +++ P E + + P+ T Q Sbjct: 391 EWQR-AKEKARKDVEELAGRLLVLQAKRKATPGRAFPPLPEWD--PLVEKGFPYELTPDQ 447 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + A++++L+D+ + M R++ GDVG GKT VAL A V G Q + P +LA+QH Sbjct: 448 KRALEEVLRDLESPHPMDRLVSGDVGFGKTEVALRAAHRVVGHGAQVAFLVPTTLLAEQH 507 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 + ++ Q + V +++ P L+ +A G I+IGTH L Q+ +++ L L Sbjct: 508 GKTFRERFQGLPVRVAVLSRFTPPKEEEAILKGLAEGTVDIVIGTHRLLQEDVRFRDLGL 567 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +IVDE+HRFGV Q+ ++ + L ++ATPIPRTL +G D+S I P GRKP Sbjct: 568 LIVDEEHRFGVAQKERIRELKAEVDTLYLSATPIPRTLYSALVGLKDLSSIQTPPPGRKP 627 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515 IKT + P + + V E + L G K +++ ++ E + S+V Sbjct: 628 IKTFLAPFDPL-LVREAILFELERGGKVFYVHDRVASIEARRRFLESLVP---------E 677 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + I ++HG+M + E M F G +L+ATT+IE G+DV +A+ I+IE A+ GLA Sbjct: 678 ARIGVVHGQMPESLIEETMLLFAEGAYDVLLATTIIEAGLDVPEANTILIERADRLGLAT 737 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632 L+QLRGRVGR EE + L + P L++ + RL+ + + D G L+AE D++ R G Sbjct: 738 LYQLRGRVGRREEEAYAYLFHPPRLTEAAEKRLAAIADLSDLGSGHLLAERDMEIRGVGN 797 Query: 633 ILGIKQSG 640 +LG +Q G Sbjct: 798 LLGPEQHG 805 >gi|315126314|ref|YP_004068317.1| transcription-repair ATP-dependent coupling factor [Pseudoalteromonas sp. SM9913] gi|315014828|gb|ADT68166.1| transcription-repair ATP-dependent coupling factor [Pseudoalteromonas sp. SM9913] Length = 1157 Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 150/411 (36%), Positives = 226/411 (54%), Gaps = 23/411 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + + G ++G+ ++ + PF T Q +AI+ +L DM K M R++ Sbjct: 577 LLDIYAQRQAKPGNKFTLDGQAYRQFSDSFPFEETDDQRNAIEAVLGDMQSKQAMDRLVC 636 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q I+ P +LAQQHY+ K + I V +++ Sbjct: 637 GDVGFGKTEVAMRAAFVAVNDNKQVAILVPTTLLAQQHYDNFKDRFADFPIEVGVLSRFN 696 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +++ LE++++G+ ++IGTH L Q I + L L+IVDE+HRFGV+Q+ K+ Sbjct: 697 STKEQKETLEKMSNGKLDVVIGTHKLIQQDINFKDLGLLIVDEEHRFGVRQKEKIKALRA 756 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I PA R +KT + R +E+I + VL Sbjct: 757 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFV--RQRDEELIR--EAVL 812 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVM 534 E G + Y++ +E +ER + +++ HG+M + + E +M Sbjct: 813 REIKRGGQVYFLHNNVE---------TIERVAQEISEWVPEATVTSAHGQMREQELEQIM 863 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F + +L+ TT+IE GIDV A+ II++ A+ GLAQLHQLRGRVGR + L Sbjct: 864 TDFYHQKYNVLVCTTIIETGIDVPTANTIIMDRADKLGLAQLHQLRGRVGRSHHQAYAYL 923 Query: 595 LYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 L P LSK++ RL + + ED GF +A DL+ R GE+LG QSG Sbjct: 924 LTGNPKALSKDAKKRLDAIASLEDLGAGFALATHDLEIRGAGELLGDDQSG 974 >gi|29374898|ref|NP_814051.1| transcription-repair coupling factor [Enterococcus faecalis V583] gi|227555903|ref|ZP_03985950.1| transcription-repair coupling factor [Enterococcus faecalis HH22] gi|29342356|gb|AAO80122.1| transcription-repair coupling factor [Enterococcus faecalis V583] gi|227174960|gb|EEI55932.1| transcription-repair coupling factor [Enterococcus faecalis HH22] gi|315573564|gb|EFU85755.1| transcription-repair coupling factor [Enterococcus faecalis TX0309B] gi|315582088|gb|EFU94279.1| transcription-repair coupling factor [Enterococcus faecalis TX0309A] Length = 1189 Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + LL ++ +K P + ++ P+S T Q Sbjct: 580 EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 637 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM + M R+L GDVG GKT VAL A AV Q + P ILAQQHY Sbjct: 638 RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I++ + + + +++ + + + +E+I HGQ I+IGTH L I + L L+ Sbjct: 698 ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 758 IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E IER ++ + +++ +++ E+K +++V Sbjct: 818 QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 865 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA HG+M+++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 925 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 926 TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 985 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669 G +LG +Q G + +++ +L +ARK K+I Q Sbjct: 986 AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1025 >gi|89094300|ref|ZP_01167241.1| transcription-repair coupling protein Mfd [Oceanospirillum sp. MED92] gi|89081359|gb|EAR60590.1| transcription-repair coupling protein Mfd [Oceanospirillum sp. MED92] Length = 1150 Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 147/385 (38%), Positives = 217/385 (56%), Gaps = 29/385 (7%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 PF T Q +AI ++++DM+ K M R++ GDVG GKT VA+ A A ++G Q VI+ Sbjct: 600 FPFEETPDQAAAIGNVIRDMTAKQPMDRLVCGDVGFGKTEVAMRAAFVAAQSGKQVVILV 659 Query: 329 PIGILAQQHYE-FIKKYTQ---NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384 P +LAQQHY+ F+ ++ N ++I TG A LE++ G I++GTH Sbjct: 660 PTTLLAQQHYQNFLDRFADWPVNIELISRFRTGKQQTA----ILEKLQSGSVDIVVGTHK 715 Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444 L I++ L LVI+DE+HRFGVQQ+ +L + +L +TATPIPRTL + G D Sbjct: 716 LLSGDIKFNNLGLVIIDEEHRFGVQQKERLKSLRSEVDILTLTATPIPRTLNMAMSGIRD 775 Query: 445 ISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNF 500 +S I PA R +KT + + E I R L G + Y++ +++ EK Sbjct: 776 LSIIATPPAKRLSVKTFVRHSDTTLVKEAILR---ELLRGGQVYYLHNEVKSIEKTAEEL 832 Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560 +V + I I HG+M + + E VM F + +L+ TT+IE GIDV +A Sbjct: 833 SELVPE---------ARIGIGHGQMRERELEQVMSDFYHKRYNILLCTTIIETGIDVPNA 883 Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED-- 616 + III+ A+ FGLAQLHQLRGRVGR + LL + ++K++ RL +++ +D Sbjct: 884 NTIIIDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPHKKSMTKDAIKRLEAIESADDLG 943 Query: 617 -GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 944 AGFTLATHDLEIRGAGELLGEEQSG 968 >gi|218710049|ref|YP_002417670.1| transcription-repair coupling factor [Vibrio splendidus LGP32] gi|218323068|emb|CAV19245.1| transcription-repair coupling factor [Vibrio splendidus LGP32] Length = 1153 Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 139/383 (36%), Positives = 213/383 (55%), Gaps = 23/383 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI ++ DM Q M R++ GDVG GKT VA+ A + Q ++ Sbjct: 599 GFPFEETDDQAMAINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVCTDNSKQVAVL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ ++ ++ +A G+ I++GTH L Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKSIMQDVADGKVDILVGTHKLLS 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +Q+ L L++VDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 719 SDLQFKDLGLLVVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502 I PA R IKT + D+ I R + VL E G + Y++ Q++ EK + + Sbjct: 779 IATPPARRLAIKTF---VRESDDAIVR-EAVLREIMRGGQVYFLHNQVDTIEKTAESLQK 834 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 ++ + + + HG+M + + E +M+ F + LL+ TT+IE GIDV A+ Sbjct: 835 LIPE---------ARVTVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANT 885 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617 I+++ A++ GLAQLHQLRGRVGR + LL PP ++K++ RL + + ED G Sbjct: 886 ILMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAMTKDAVKRLDAIASLEDLGAG 945 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F +A DL+ R GE+LG +QSG Sbjct: 946 FTLATHDLEIRGAGELLGDEQSG 968 >gi|257088697|ref|ZP_05583058.1| transcription-repair coupling factor [Enterococcus faecalis CH188] gi|256997509|gb|EEU84029.1| transcription-repair coupling factor [Enterococcus faecalis CH188] Length = 1179 Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + LL ++ +K P + ++ P+S T Q Sbjct: 570 EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 627 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM + M R+L GDVG GKT VAL A AV Q + P ILAQQHY Sbjct: 628 RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I++ + + + +++ + + + +E+I HGQ I+IGTH L I + L L+ Sbjct: 688 ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 748 IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E IER ++ + +++ +++ E+K +++V Sbjct: 808 QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 855 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA HG+M+++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 915 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 916 TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 975 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669 G +LG +Q G + +++ +L +ARK K+I Q Sbjct: 976 AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1015 >gi|229550502|ref|ZP_04439227.1| transcription-repair coupling factor [Enterococcus faecalis ATCC 29200] gi|307286964|ref|ZP_07567039.1| transcription-repair coupling factor [Enterococcus faecalis TX0109] gi|307290197|ref|ZP_07570115.1| transcription-repair coupling factor [Enterococcus faecalis TX0411] gi|229304359|gb|EEN70355.1| transcription-repair coupling factor [Enterococcus faecalis ATCC 29200] gi|306498753|gb|EFM68252.1| transcription-repair coupling factor [Enterococcus faecalis TX0411] gi|306501910|gb|EFM71199.1| transcription-repair coupling factor [Enterococcus faecalis TX0109] gi|315028825|gb|EFT40757.1| transcription-repair coupling factor [Enterococcus faecalis TX4000] gi|315168150|gb|EFU12167.1| transcription-repair coupling factor [Enterococcus faecalis TX1341] gi|315171410|gb|EFU15427.1| transcription-repair coupling factor [Enterococcus faecalis TX1342] Length = 1189 Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 155/463 (33%), Positives = 250/463 (53%), Gaps = 29/463 (6%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + LL ++ +K P + ++ P+S T Q Sbjct: 580 EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 637 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM + M R+L GDVG GKT VAL A AV Q + P ILAQQHY Sbjct: 638 RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I++ + + + +++ + + + +E+I HGQ I+IGTH L I + L L+ Sbjct: 698 ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 758 IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E IER ++ + +++ +++ E+K +++V Sbjct: 818 QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 865 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA HG+M+++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 925 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 926 TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 985 Query: 630 EGEILGIKQSGMPKFLIAQP-ELHDSLLE--IARKDAKHILTQ 669 G +LG +Q G F+ + +++ +L +ARK K+I Q Sbjct: 986 AGNLLGAQQHG---FIDSVGFDMYSQMLSEAVARKQGKNIQDQ 1025 >gi|256964180|ref|ZP_05568351.1| transcription-repair coupling factor [Enterococcus faecalis HIP11704] gi|256954676|gb|EEU71308.1| transcription-repair coupling factor [Enterococcus faecalis HIP11704] Length = 1179 Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + LL ++ +K P + ++ P+S T Q Sbjct: 570 EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 627 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM + M R+L GDVG GKT VAL A AV Q + P ILAQQHY Sbjct: 628 RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I++ + + + +++ + + + +E+I HGQ I+IGTH L I + L L+ Sbjct: 688 ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 748 IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E IER ++ + +++ +++ E+K +++V Sbjct: 808 QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 855 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA HG+M+++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 915 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 916 TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 975 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669 G +LG +Q G + +++ +L +ARK K+I Q Sbjct: 976 AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1015 >gi|229589088|ref|YP_002871207.1| transcription-repair coupling factor [Pseudomonas fluorescens SBW25] gi|229360954|emb|CAY47814.1| transcription-repair coupling factor [Pseudomonas fluorescens SBW25] Length = 1149 Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 146/377 (38%), Positives = 210/377 (55%), Gaps = 17/377 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q++ I+ + DM M R++ GDVG GKT VA+ A AV G Q I+ P Sbjct: 601 FEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT 660 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LAQQHY + + + VE+++ A+ +A G+ I+IGTH L D + Sbjct: 661 TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSDDV 720 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + L LVI+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S I Sbjct: 721 KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT 780 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508 PA R ++T ++ N+ V E L L G + Y++ ++ EK ++ +V Sbjct: 781 PPARRLSVRTFVMEQNK-STVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPE-- 837 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 + IAI HG+M + D E VM F + +LIA+T+IE GIDV A+ IIIE A Sbjct: 838 -------ARIAIGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERA 890 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623 + FGLAQLHQLRGRVGR + LL P ++ ++ RL + NT+D GF++A Sbjct: 891 DKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATN 950 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R GE+LG QSG Sbjct: 951 DLEIRGAGELLGDGQSG 967 >gi|257078484|ref|ZP_05572845.1| transcription-repair coupling factor [Enterococcus faecalis JH1] gi|256986514|gb|EEU73816.1| transcription-repair coupling factor [Enterococcus faecalis JH1] Length = 1179 Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + LL ++ +K P + ++ P+S T Q Sbjct: 570 EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 627 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM + M R+L GDVG GKT VAL A AV Q + P ILAQQHY Sbjct: 628 RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I++ + + + +++ + + + +E+I HGQ I+IGTH L I + L L+ Sbjct: 688 ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 748 IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E IER ++ + +++ +++ E+K +++V Sbjct: 808 QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 855 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA HG+M+++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 915 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 916 TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 975 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669 G +LG +Q G + +++ +L +ARK K+I Q Sbjct: 976 AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1015 >gi|255974757|ref|ZP_05425343.1| transcription-repair coupling factor [Enterococcus faecalis T2] gi|255967629|gb|EET98251.1| transcription-repair coupling factor [Enterococcus faecalis T2] Length = 1179 Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + LL ++ +K P + ++ P+S T Q Sbjct: 570 EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 627 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM + M R+L GDVG GKT VAL A AV Q + P ILAQQHY Sbjct: 628 RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I++ + + + +++ + + + +E+I HGQ I+IGTH L I + L L+ Sbjct: 688 ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 748 IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E IER ++ + +++ +++ E+K +++V Sbjct: 808 QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 855 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA HG+M+++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 915 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 916 TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 975 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669 G +LG +Q G + +++ +L +ARK K+I Q Sbjct: 976 AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1015 >gi|238762212|ref|ZP_04623184.1| Transcription-repair-coupling factor [Yersinia kristensenii ATCC 33638] gi|238699559|gb|EEP92304.1| Transcription-repair-coupling factor [Yersinia kristensenii ATCC 33638] Length = 1048 Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 147/409 (35%), Positives = 222/409 (54%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G ++ + Q ++ PF T QE AI +L DM + M R++ Sbjct: 468 LLDIYAQRAAKSGFKFKLDKEQYQLFCQSFPFETTPDQEQAINAVLSDMCRPLAMDRLVC 527 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LAQQH++ + + +E+++ Sbjct: 528 GDVGFGKTEVAMRAAFLAVANNKQVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMMSRFR 587 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 ++ L++ A G+ I+IGTH L Q +++ L L++VDE+HRFGV+ + ++ Sbjct: 588 SAKEQQVILDQAAEGKVDIVIGTHKLLQSDLRWQDLGLLVVDEEHRFGVRHKERIKAMRA 647 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I PA R +KT + D ++ R + +L Sbjct: 648 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDSLVVR-EAIL 703 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ +E N +R L + IAI HG+M + D E VM+ Sbjct: 704 REILRGGQVYYLYNDVE-----NIEKATQRLAELVPE--ARIAIGHGQMRERDLERVMND 756 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ TT+IE GID+ A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 757 FHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 816 Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 P ++ ++ RL + + ED GF +A DL+ R GE+LG QSG Sbjct: 817 PNPKAMTVDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 865 >gi|256956814|ref|ZP_05560985.1| transcription-repair coupling factor [Enterococcus faecalis DS5] gi|256960620|ref|ZP_05564791.1| transcription-repair coupling factor [Enterococcus faecalis Merz96] gi|257081545|ref|ZP_05575906.1| transcription-repair coupling factor [Enterococcus faecalis E1Sol] gi|294779317|ref|ZP_06744720.1| transcription-repair coupling factor [Enterococcus faecalis PC1.1] gi|300861968|ref|ZP_07108048.1| transcription-repair coupling factor [Enterococcus faecalis TUSoD Ef11] gi|256947310|gb|EEU63942.1| transcription-repair coupling factor [Enterococcus faecalis DS5] gi|256951116|gb|EEU67748.1| transcription-repair coupling factor [Enterococcus faecalis Merz96] gi|256989575|gb|EEU76877.1| transcription-repair coupling factor [Enterococcus faecalis E1Sol] gi|294453603|gb|EFG22002.1| transcription-repair coupling factor [Enterococcus faecalis PC1.1] gi|300848493|gb|EFK76250.1| transcription-repair coupling factor [Enterococcus faecalis TUSoD Ef11] Length = 1179 Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + LL ++ +K P + ++ P+S T Q Sbjct: 570 EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 627 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM + M R+L GDVG GKT VAL A AV Q + P ILAQQHY Sbjct: 628 RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I++ + + + +++ + + + +E+I HGQ I+IGTH L I + L L+ Sbjct: 688 ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 748 IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E IER ++ + +++ +++ E+K +++V Sbjct: 808 QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 855 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA HG+M+++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 915 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 916 TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 975 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669 G +LG +Q G + +++ +L +ARK K+I Q Sbjct: 976 AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1015 >gi|257084193|ref|ZP_05578554.1| transcription-repair coupling factor [Enterococcus faecalis Fly1] gi|256992223|gb|EEU79525.1| transcription-repair coupling factor [Enterococcus faecalis Fly1] Length = 1179 Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + LL ++ +K P + ++ P+S T Q Sbjct: 570 EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 627 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM + M R+L GDVG GKT VAL A AV Q + P ILAQQHY Sbjct: 628 RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I++ + + + +++ + + + +E+I HGQ I+IGTH L I + L L+ Sbjct: 688 ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 748 IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E IER ++ + +++ +++ E+K +++V Sbjct: 808 QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 855 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA HG+M+++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 915 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 916 TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 975 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669 G +LG +Q G + +++ +L +ARK K+I Q Sbjct: 976 AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1015 >gi|256855211|ref|ZP_05560572.1| transcription-repair coupling factor [Enterococcus faecalis T8] gi|256709724|gb|EEU24771.1| transcription-repair coupling factor [Enterococcus faecalis T8] Length = 1179 Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + LL ++ +K P + ++ P+S T Q Sbjct: 570 EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 627 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM + M R+L GDVG GKT VAL A AV Q + P ILAQQHY Sbjct: 628 RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I++ + + + +++ + + + +E+I HGQ I+IGTH L I + L L+ Sbjct: 688 ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 748 IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E IER ++ + +++ +++ E+K +++V Sbjct: 808 QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 855 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA HG+M+++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 915 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 916 TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 975 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669 G +LG +Q G + +++ +L +ARK K+I Q Sbjct: 976 AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1015 >gi|315145387|gb|EFT89403.1| transcription-repair coupling factor [Enterococcus faecalis TX2141] Length = 1189 Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + LL ++ +K P + ++ P+S T Q Sbjct: 580 EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 637 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM + M R+L GDVG GKT VAL A AV Q + P ILAQQHY Sbjct: 638 RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I++ + + + +++ + + + +E+I HGQ I+IGTH L I + L L+ Sbjct: 698 ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 758 IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E IER ++ + +++ +++ E+K +++V Sbjct: 818 QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 865 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA HG+M+++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 925 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 926 TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 985 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669 G +LG +Q G + +++ +L +ARK K+I Q Sbjct: 986 AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1025 >gi|256762052|ref|ZP_05502632.1| transcription-repair coupling factor [Enterococcus faecalis T3] gi|256683303|gb|EEU22998.1| transcription-repair coupling factor [Enterococcus faecalis T3] Length = 1179 Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + LL ++ +K P + ++ P+S T Q Sbjct: 570 EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 627 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM + M R+L GDVG GKT VAL A AV Q + P ILAQQHY Sbjct: 628 RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I++ + + + +++ + + + +E+I HGQ I+IGTH L I + L L+ Sbjct: 688 ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 748 IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E IER ++ + +++ +++ E+K +++V Sbjct: 808 QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 855 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA HG+M+++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 915 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 916 TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 975 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669 G +LG +Q G + +++ +L +ARK K+I Q Sbjct: 976 AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1015 >gi|315158594|gb|EFU02611.1| transcription-repair coupling factor [Enterococcus faecalis TX0312] Length = 1189 Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 155/463 (33%), Positives = 250/463 (53%), Gaps = 29/463 (6%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + LL ++ +K P + ++ P+S T Q Sbjct: 580 EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 637 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM + M R+L GDVG GKT VAL A AV Q + P ILAQQHY Sbjct: 638 RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I++ + + + +++ + + + +E+I HGQ I+IGTH L I + L L+ Sbjct: 698 ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 758 IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E IER ++ + +++ +++ E+K +++V Sbjct: 818 QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 865 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA HG+M+++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 925 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 926 TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 985 Query: 630 EGEILGIKQSGMPKFLIAQP-ELHDSLLE--IARKDAKHILTQ 669 G +LG +Q G F+ + +++ +L +ARK K+I Q Sbjct: 986 AGNLLGAQQHG---FIDSVGFDMYSQMLSEAVARKQGKNIQDQ 1025 >gi|241890049|ref|ZP_04777347.1| transcription-repair coupling factor [Gemella haemolysans ATCC 10379] gi|241863671|gb|EER68055.1| transcription-repair coupling factor [Gemella haemolysans ATCC 10379] Length = 1183 Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 139/409 (33%), Positives = 234/409 (57%), Gaps = 19/409 (4%) Query: 242 LMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L++ K+E+ G +++G + + + F+PT+ Q A ++I +DM ++ M R+L Sbjct: 574 LIKLYIKRELSSGYAYSIDGSLQAEFEADFSFTPTEDQVKATEEIKRDMEKERPMDRLLC 633 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358 GDVG GKT VA+ AV Q ++ P +LA+QHY+ F+ ++ N I +E+++ Sbjct: 634 GDVGFGKTEVAMRVAFKAVTDNKQVAVLVPTTLLAEQHYDNFVNRFA-NFPINIEVVSRF 692 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + +++ G+ II+GTH L D +Y L L+I+DE+ RFGV+ + K+ Sbjct: 693 KSAKDITEICKKLEEGKIDIIVGTHKLLNDKFKYKDLGLLIIDEEQRFGVKHKEKIKHLK 752 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 VL ++ATPIPRTL ++ +G D+S I P R+PI+T + N++ + E + Sbjct: 753 NTVDVLTLSATPIPRTLHMSLIGIRDLSVIETPPRERQPIQTFVTAQNKM-VIKEAVMNE 811 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 ++ G + +++ ++E ++ E++ L +IA HGRMS + E++M Sbjct: 812 VNRGGQVFYVYNRVE--------TIDEKYLELKRLLPDINIAYAHGRMSQRELENIMTDV 863 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 + +LI+TT+IE GID+ + + +I+E+A+ FGL+QL+QLRGRVGR + L+Y Sbjct: 864 IDRKYDMLISTTIIETGIDISNVNTLIVEDADRFGLSQLYQLRGRVGRSSREAYAYLMYE 923 Query: 598 P--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGM 641 P L++NS RLS +KN GF IA +DL R G++LG +Q G Sbjct: 924 PFKSLTENSEKRLSAIKNFTSLGSGFKIAMQDLSIRGAGDVLGGRQHGF 972 >gi|320540384|ref|ZP_08040034.1| putative transcription-repair coupling factor [Serratia symbiotica str. Tucson] gi|320029315|gb|EFW11344.1| putative transcription-repair coupling factor [Serratia symbiotica str. Tucson] Length = 1158 Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 146/388 (37%), Positives = 214/388 (55%), Gaps = 23/388 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q+ AI +L DM Q M R++ GD+G GKT VA+ A AVE G Sbjct: 598 QLFCQTFPFETTLDQQQAINAVLSDMCQPLAMDRLVCGDIGFGKTEVAMRAAFLAVENGK 657 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQH++ + I +++++ +++ L+ A G+ IIIGT Sbjct: 658 QVAVLVPTTLLAQQHFDNFRDRFATWPIRIDMMSRFRSAKEQQQVLDAAATGKVDIIIGT 717 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q + + L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 718 HKLLQGDLCWRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 777 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKE 497 D+S I PA R +KT + D ++ R + +L E G + Y++ +E EK E Sbjct: 778 RDLSIIATPPARRLAVKTF---VREYDSLMVR-EAILREVLRGGQVYYLYNDVENIEKAE 833 Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557 +V + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 834 QKLAELVPE---------ARIAIGHGQMRERNLERVMNDFHHQRFNVLVCTTIIETGIDI 884 Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE 615 A+ IIIE A+ FGLAQLHQLRGRVGR + LL P +S ++ RL+ + + E Sbjct: 885 ASANTIIIERADRFGLAQLHQLRGRVGRSHHQAYAYLLTPNPQAMSADAQKRLAAIASLE 944 Query: 616 D---GFLIAEEDLKQRKEGEILGIKQSG 640 D GF +A DL+ R GE+LG QSG Sbjct: 945 DLGAGFALATHDLEIRGAGELLGEDQSG 972 >gi|256618332|ref|ZP_05475178.1| transcription-repair coupling factor [Enterococcus faecalis ATCC 4200] gi|256597859|gb|EEU17035.1| transcription-repair coupling factor [Enterococcus faecalis ATCC 4200] Length = 1179 Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + LL ++ +K P + ++ P+S T Q Sbjct: 570 EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 627 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM + M R+L GDVG GKT VAL A AV Q + P ILAQQHY Sbjct: 628 RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I++ + + + +++ + + + +E+I HGQ I+IGTH L I + L L+ Sbjct: 688 ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 748 IIDEEQRFGVKHKERLKQLLSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E IER ++ + +++ +++ E+K +++V Sbjct: 808 QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 855 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA HG+M+++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 915 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 916 TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 975 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669 G +LG +Q G + +++ +L +ARK K+I Q Sbjct: 976 AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1015 >gi|156741461|ref|YP_001431590.1| transcription-repair coupling factor [Roseiflexus castenholzii DSM 13941] gi|156232789|gb|ABU57572.1| transcription-repair coupling factor [Roseiflexus castenholzii DSM 13941] Length = 1246 Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 152/429 (35%), Positives = 233/429 (54%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W R+ A + LA ++ L ++Q + G + + + +++ + P+ T Q Sbjct: 611 DWERAKRKARAAVQDLADELIGLYAQRQLAE--GHAFSPDTEWQRELEASFPYVETPDQL 668 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 AI D+ +DM Q M R++ GDVG GKT VAL A AV+ G Q ++AP +L QQHY Sbjct: 669 KAIIDVKRDMEQPQPMDRLICGDVGFGKTEVALRAAFKAVQDGKQVAVLAPTTVLVQQHY 728 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + VE+I+ + + R+A G+ +IIGTH L + + L L+ Sbjct: 729 DTFSRRMAAFPVRVEMISRFRSAKEQSDIVRRLARGEIDVIIGTHRLLSKDVVFKDLGLL 788 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 +VDE+ RFGV+ + ++ Q T V+ +TATPIPRTL + G D+S I P R PI Sbjct: 789 VVDEEQRFGVRHKERIKQLRTNVDVITLTATPIPRTLHMALAGIRDLSVIDTPPEDRIPI 848 Query: 459 KTVIIPI--NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 KT ++P N I E I R L G + Y++ +++ + V +R L + Sbjct: 849 KTYVLPYDENLIREAILR---ELDRGGQVYFVHNRVQ-----SIYYVADRLRQLVPE--A 898 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 IA+ HG++ + E VM F G +L+ TT+IE G+DV +A+ III++A HFGLAQL Sbjct: 899 RIAVGHGQLDERQLERVMLDFFTGRDDVLVCTTIIESGLDVPNANTIIIDDATHFGLAQL 958 Query: 577 HQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 +QLRGRVGRG + + L Y P + + RL ++ + GF IA DL+ R G Sbjct: 959 YQLRGRVGRGTQRAYAYLFYRSERPSTPEAQERLQAIQEATELGAGFRIAMRDLEIRGAG 1018 Query: 632 EILGIKQSG 640 +LG +QSG Sbjct: 1019 NLLGAEQSG 1027 >gi|257088020|ref|ZP_05582381.1| transcription-repair coupling factor [Enterococcus faecalis D6] gi|256996050|gb|EEU83352.1| transcription-repair coupling factor [Enterococcus faecalis D6] Length = 1179 Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + LL ++ +K P + ++ P+S T Q Sbjct: 570 EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 627 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM + M R+L GDVG GKT VAL A AV Q + P ILAQQHY Sbjct: 628 RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I++ + + + +++ + + + +E+I HGQ I+IGTH L I + L L+ Sbjct: 688 ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 748 IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E IER ++ + +++ +++ E+K +++V Sbjct: 808 QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 855 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA HG+M+++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 915 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 916 TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 975 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669 G +LG +Q G + +++ +L +ARK K+I Q Sbjct: 976 AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1015 >gi|298486416|ref|ZP_07004477.1| Transcription-repair coupling factor [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159044|gb|EFI00104.1| Transcription-repair coupling factor [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 1152 Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 145/380 (38%), Positives = 211/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q++ I+ + DM M R++ GDVG GKT VA+ A AV G Q I+ Sbjct: 601 GFPFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 660 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A+ +A G+ I+IGTH L Q Sbjct: 661 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQ 720 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D ++ L LVI+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 721 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 780 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R ++T ++ N+ + E L L G + Y++ ++ EK ++ +V Sbjct: 781 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 839 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + I I HG+M + + E VM F + +LIA+T+IE GIDV A+ III Sbjct: 840 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 890 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL P ++ ++ RL + NT+D GF++ Sbjct: 891 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVL 950 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 951 ATNDLEIRGAGELLGDGQSG 970 >gi|290475839|ref|YP_003468731.1| transcription-repair ATP-dependent coupling factor [Xenorhabdus bovienii SS-2004] gi|289175164|emb|CBJ81967.1| transcription-repair ATP-dependent coupling factor [Xenorhabdus bovienii SS-2004] Length = 1146 Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 142/387 (36%), Positives = 213/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q ++ PF T QE AI +L DM Q M R++ GDVG GKT VA+ A A+ Sbjct: 590 QLFCQSFPFDTTPDQEQAINAVLDDMCQPVAMDRLVCGDVGFGKTEVAMRAAFMAITNNK 649 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+++ +++ ++ A G+ IIIGT Sbjct: 650 QVAVLVPTTLLAQQHYDNFRDRFANWPVHLEVLSRFRSAKEQQQVIDMAAEGKVDIIIGT 709 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q+ + + + L+IVDE+HRFGV+ + ++ VL +TATPIPRTL + G Sbjct: 710 HKLLQNDLCWKDIGLLIVDEEHRFGVRHKERIKAIRADVDVLTLTATPIPRTLNMAMSGM 769 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498 D+S I PA R +KT + D ++ R ++ + G + Y++ +E EK ++ Sbjct: 770 RDLSIIATPPARRLAVKTF---VREYDSLVVRESILREILRGGQVYYLYNDVENIEKAKN 826 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + I + HG+M + D E VM F + +L+ TT+IE GID+ Sbjct: 827 RLEELVPE---------ARIVVGHGQMRERDLERVMADFHHQRFNVLVCTTIIETGIDIP 877 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL P ++ ++ RL + + ED Sbjct: 878 SANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMTTDAQKRLEAIASLED 937 Query: 617 ---GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 938 LGAGFALATHDLEIRGAGELLGEDQSG 964 >gi|90579501|ref|ZP_01235310.1| putative transcription-repair coupling factor [Vibrio angustum S14] gi|90439075|gb|EAS64257.1| putative transcription-repair coupling factor [Vibrio angustum S14] Length = 1153 Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 147/430 (34%), Positives = 233/430 (54%), Gaps = 23/430 (5%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W+ R+ +A ++ + +++ K G+ ++ + + P+ T Q Sbjct: 556 WSKARRKAAEKVRDVAAELLDVYAKRELKP--GVKFTLDREAYAEFSAGFPYEETYDQAL 613 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI +L DM Q M R++ GDVG GKT VA+ A AV+ Q ++ P +LAQQH+E Sbjct: 614 AINAVLSDMCQTKVMDRLVCGDVGFGKTEVAMRAAFVAVDNNKQVTVLVPTTLLAQQHFE 673 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 + NT + VE+++ +++ L + G+ I+IGTH L S+ Y+ L L+I Sbjct: 674 NFRDRFANTPVRVEVLSRFKTAKEQKQILADVEEGKIDILIGTHKLLNSSVNYHDLGLLI 733 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 VDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S I PA R IK Sbjct: 734 VDEEHRFGVRQKEKIKAIRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 793 Query: 460 TVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515 T + + D+ + R V+ +S G + Y++ +++ EK + ++ Sbjct: 794 TF---VRQSDDAVIREAVLREISRGGQVYFLHNEVDSIEKTTEDLAKLIPE--------- 841 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + I HG+M + + E +M F + +L+ TT+IE GIDV A+ II++ A++ GLAQ Sbjct: 842 ARITFAHGQMRERELEKIMGDFYHQRFNVLVCTTIIETGIDVPTANTIIMDRADNLGLAQ 901 Query: 576 LHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630 LHQLRGRVGR + LL HP ++K++ RL + + ED GF +A DL+ R Sbjct: 902 LHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAVKRLEAISSLEDLGAGFTLATHDLEIRGA 961 Query: 631 GEILGIKQSG 640 GE+LG +QSG Sbjct: 962 GELLGDEQSG 971 >gi|257418651|ref|ZP_05595645.1| transcription-repair coupling factor [Enterococcus faecalis T11] gi|257160479|gb|EEU90439.1| transcription-repair coupling factor [Enterococcus faecalis T11] Length = 1179 Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + LL ++ +K P + ++ P+S T Q Sbjct: 570 EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPD--DAYQKEFEEAFPYSETDDQL 627 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM + M R+L GDVG GKT VAL A AV Q + P ILAQQHY Sbjct: 628 RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I++ + + + +++ + + + +E+I HGQ I+IGTH L I + L L+ Sbjct: 688 ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 748 IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E IER ++ + +++ +++ E+K +++V Sbjct: 808 QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 855 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA HG+M+++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 915 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 916 TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 975 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669 G +LG +Q G + +++ +L +ARK K+I Q Sbjct: 976 AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1015 >gi|146311285|ref|YP_001176359.1| transcription-repair coupling factor [Enterobacter sp. 638] gi|145318161|gb|ABP60308.1| transcription-repair coupling factor [Enterobacter sp. 638] Length = 1148 Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 144/386 (37%), Positives = 214/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRATFLAVENNK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+++ + + LE+ G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILEQAREGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDVKWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREVLRGGQVYYLFNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ++ L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKTADKLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ I+IE A+HFGLAQLHQLRGRVGR + L+ HP ++ ++ RL + + ED Sbjct: 880 ANTIVIERADHFGLAQLHQLRGRVGRSHHQAYAWLMTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEDQSG 965 >gi|229546913|ref|ZP_04435638.1| transcription-repair coupling factor [Enterococcus faecalis TX1322] gi|312952657|ref|ZP_07771521.1| transcription-repair coupling factor [Enterococcus faecalis TX0102] gi|229307841|gb|EEN73828.1| transcription-repair coupling factor [Enterococcus faecalis TX1322] gi|310629445|gb|EFQ12728.1| transcription-repair coupling factor [Enterococcus faecalis TX0102] gi|315153559|gb|EFT97575.1| transcription-repair coupling factor [Enterococcus faecalis TX0031] gi|315156261|gb|EFU00278.1| transcription-repair coupling factor [Enterococcus faecalis TX0043] Length = 1189 Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 155/463 (33%), Positives = 250/463 (53%), Gaps = 29/463 (6%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + LL ++ +K P + ++ P+S T Q Sbjct: 580 EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 637 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM + M R+L GDVG GKT VAL A AV Q + P ILAQQHY Sbjct: 638 RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I++ + + + +++ + + + +E+I HGQ I+IGTH L I + L L+ Sbjct: 698 ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 758 IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E IER ++ + +++ +++ E+K +++V Sbjct: 818 QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 865 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA HG+M+++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 925 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 926 TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 985 Query: 630 EGEILGIKQSGMPKFLIAQP-ELHDSLLE--IARKDAKHILTQ 669 G +LG +Q G F+ + +++ +L +ARK K+I Q Sbjct: 986 AGNLLGAQQHG---FIDSVGFDMYSQMLSEAVARKQGKNIQDQ 1025 >gi|328956571|ref|YP_004373957.1| transcription-repair coupling factor [Carnobacterium sp. 17-4] gi|328672895|gb|AEB28941.1| transcription-repair coupling factor [Carnobacterium sp. 17-4] Length = 1173 Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 147/419 (35%), Positives = 231/419 (55%), Gaps = 28/419 (6%) Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290 DEL I L R+Q E+G + + ++ P++ T+ Q S+ +I DM Q Sbjct: 587 DEL----IELYAAREQ---EVGYAFSPDDAYQEEFENAFPYTETEDQLSSTAEIKHDMEQ 639 Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350 K M R+L GDVG GKT VA+ A+ AV+ G QA + P ILAQQHYE + + + I Sbjct: 640 KKPMDRLLVGDVGYGKTEVAMRAIFKAVQEGKQAAFLVPTTILAQQHYETMLQRFADFPI 699 Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410 + +++ + + + + + GQ I++GTH + I++ + L+IVDE+ RFGV+ Sbjct: 700 EIGLLSRFRTKKQQNETIAGLKKGQVDIVVGTHRILSKDIEFQDIGLLIVDEEQRFGVKH 759 Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RI 468 + KL Q VL +TATPIPRTL ++ LG D+S I PA R P++T ++ N I Sbjct: 760 KEKLKQLKAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPVQTYVMEQNLGAI 819 Query: 469 DEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMS 526 E +ER ++ G + +++ ++ EKK + ++ + I HG+M+ Sbjct: 820 REAVER---EMARGGQVFYLYNRVATIEKKVDELQQLIP---------DARIGYAHGQMT 867 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 + E+ + F G +L+ TT+IE G+D+ + + + +ENA+H GL+QL+QLRGRVGR Sbjct: 868 EGQLENTLLQFIEGEYDMLVTTTIIETGVDMPNVNTLFVENADHMGLSQLYQLRGRVGRS 927 Query: 587 EEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640 ++ LY P L++ S RL +K+ TE GF IA DL R G +LG +Q G Sbjct: 928 NRVAYAYFLYQPNKVLNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNLLGAQQHG 986 >gi|261346027|ref|ZP_05973671.1| transcription-repair coupling factor [Providencia rustigianii DSM 4541] gi|282565913|gb|EFB71448.1| transcription-repair coupling factor [Providencia rustigianii DSM 4541] Length = 1148 Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 147/411 (35%), Positives = 223/411 (54%), Gaps = 23/411 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + + Q+ PF T QE AI +L DM Q M R++ Sbjct: 567 LLDIYAQRAAKAGFAFKHDKQQYQEFCHGFPFETTADQEMAINAVLSDMCQPIAMDRLVC 626 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A A+ Q ++ P +LAQQH++ + N + +E+++ Sbjct: 627 GDVGFGKTEVAMRAAFLAISNNKQVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFR 686 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +++ + A G+ I+IGTH L Q+ I + L L++VDE+HRFGV+ + ++ Sbjct: 687 TAKEQQQIISDTAEGKVDILIGTHKLLQNDIHWKDLGLLVVDEEHRFGVRHKERIKAMRA 746 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I PA R +KT + + D++I R + +L Sbjct: 747 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VRQYDDLIVR-EAIL 802 Query: 480 SE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534 E G + Y++ +E EK ++ ++V + + HG+M + + E VM Sbjct: 803 RETLRGGQVYYLYNDVENIEKAKARLEALVPE---------ARFVVGHGQMRERELERVM 853 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F + +LI TT+IE GID+ A+ IIIE A+HFGLAQLHQLRGRVGR + L Sbjct: 854 TDFHHQRFNVLICTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYL 913 Query: 595 LY-HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 L HP ++ ++ RL + + ED GF +A DL+ R GE+LG QSG Sbjct: 914 LTPHPKAMTTDAQKRLEAISSLEDLGAGFALATHDLEIRGAGELLGDDQSG 964 >gi|300870408|ref|YP_003785279.1| transcription-repair coupling factor [Brachyspira pilosicoli 95/1000] gi|300688107|gb|ADK30778.1| transcription-repair coupling factor [Brachyspira pilosicoli 95/1000] Length = 1196 Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 147/403 (36%), Positives = 220/403 (54%), Gaps = 23/403 (5%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T Q AI DI DM M R++ GDVG GKT VA A+ AV AG Q I+ P Sbjct: 612 YEETVDQLRAINDIKSDMESDKMMDRLVCGDVGFGKTEVAFRAIFKAVMAGKQCAILCPT 671 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 IL+QQHY KK ++ + +E++ + +K E +A+G IIIGTH L D I Sbjct: 672 TILSQQHYNNAKKRFEDFPVRIEVLNRFISSRQAKKNKEMLANGSCDIIIGTHMLLSDDI 731 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L L+++DE+ RFGV+ + L + VL ++ATPIPRTL + G DIS I Sbjct: 732 KFKNLGLIVIDEEQRFGVKHKEALKKLRFETDVLTLSATPIPRTLNMALTGIRDISIIET 791 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P R P+KT ++ N V+ ++ L + +++ +I+ +E F + Sbjct: 792 PPLNRIPVKTYVMEFNE-KTVVNAIERELKRNGQVFYLYNRID---------TIESFALM 841 Query: 511 HEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 + +SI + HGRM+ I E +M F N +L++TT+IE GID+ +A+ I+I++A Sbjct: 842 IKKLCPKASICVAHGRMTGIQLEKIMSDFINHKYDILVSTTIIENGIDIPNANTILIDSA 901 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623 GL++L+QLRGRVGR + + + Y + L++ +Y RL + D GF IA Sbjct: 902 NKLGLSELYQLRGRVGRSDREAYAYMFYPENLALTEVAYKRLQAISEHTDLGAGFKIAMR 961 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQP--ELHDSLLEIARKDAK 664 DL+ R G ILG +QSGM I Q EL+ +LE A + K Sbjct: 962 DLEIRGAGNILGKEQSGM----IYQVGYELYTQMLEEATNEYK 1000 >gi|257417623|ref|ZP_05594617.1| transcription-repair coupling factor [Enterococcus faecalis AR01/DG] gi|257159451|gb|EEU89411.1| transcription-repair coupling factor [Enterococcus faecalis ARO1/DG] Length = 1179 Score = 233 bits (594), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 153/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + LL ++ +K P + ++ P+S T Q Sbjct: 570 EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPD--DAYQKEFEEAFPYSETDDQL 627 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM + M R+L GDVG GKT VAL A AV Q + P ILAQQHY Sbjct: 628 RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I++ + + + +++ + + + +E+I HGQ I+IGTH L I + L L+ Sbjct: 688 ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 ++DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 748 VIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E IER ++ + +++ +++ E+K +++V Sbjct: 808 QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 855 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA HG+M+++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 915 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 916 TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 975 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669 G +LG +Q G + +++ +L +ARK K+I Q Sbjct: 976 AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1015 >gi|298492665|ref|YP_003722842.1| transcription-repair coupling factor ['Nostoc azollae' 0708] gi|298234583|gb|ADI65719.1| transcription-repair coupling factor ['Nostoc azollae' 0708] Length = 1166 Score = 233 bits (594), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 137/381 (35%), Positives = 215/381 (56%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q A++D+ +DM + M R++ GDVG GKT VA+ A+ AV AG Q ++ Sbjct: 614 SFPYQATTDQLKAVQDVKRDMESERPMDRLVCGDVGFGKTEVAIRAIFKAVTAGKQVAVL 673 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 AP IL QQHY IK+ + V ++ +R +R+A G+ I++GTH L Sbjct: 674 APTTILTQQHYHTIKERFSPYPVNVGLLNRFRSAEEKRNIQKRLATGELDIVVGTHQLLG 733 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +Q+ L L+++DE+ RFGV Q+ K+ T VL ++ATPIPRTL ++ G ++S Sbjct: 734 KGVQFRDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSLSGIREMSL 793 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504 IT P R+PI+T + P+N E++ ++ L G + +++ P++E E+ +N R ++ Sbjct: 794 ITTPPPTRRPIQTHLAPLN--PEIVRSAIRQELDRGGQVFYVVPRVEGIEETTANLREMI 851 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 AI HG+M + + ES M +F N +L+ TT+IE G+D+ + I+ Sbjct: 852 P---------GGRFAIAHGQMEESELESTMLTFGNNDADILVCTTIIESGLDIPRVNTIL 902 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK---NTEDGFL 619 IE+A FGLAQL+QLRGRVGR + L YH LS + RL ++ G+ Sbjct: 903 IEDAHRFGLAQLYQLRGRVGRAGIQAHAWLFYHKQRELSDAARLRLRAIQEFTQLGSGYQ 962 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A D++ R G +LG +QSG Sbjct: 963 LAMRDMEIRGVGNLLGAEQSG 983 >gi|283833508|ref|ZP_06353249.1| transcription-repair coupling factor [Citrobacter youngae ATCC 29220] gi|291071173|gb|EFE09282.1| transcription-repair coupling factor [Citrobacter youngae ATCC 29220] Length = 1148 Score = 233 bits (594), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 146/386 (37%), Positives = 214/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQH++ + N + +E+++ + + LE++A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQADVKLKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDNLVVR-EAILREVLRGGQVYYLFNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + +R L + I I HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKTADRLAELVPE--ARIGIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEDQSG 965 >gi|269960991|ref|ZP_06175360.1| transcription-repair coupling factor [Vibrio harveyi 1DA3] gi|269834210|gb|EEZ88300.1| transcription-repair coupling factor [Vibrio harveyi 1DA3] Length = 1123 Score = 233 bits (594), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 142/381 (37%), Positives = 212/381 (55%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI +L DM Q M R++ GDVG GKT VA+ A A + Q ++ Sbjct: 569 TFPFEETDDQSMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVL 628 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ ++ L+ +A G+ I++GTH L Sbjct: 629 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLS 688 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 689 SDIKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 748 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKV-VLSEGKKAYWICPQIE--EKKESNFRSVV 504 I PA R IKT + R D V+ + + G + Y++ Q+E EK + + ++ Sbjct: 749 IATPPARRLAIKTFV--RQREDSVVREAALREIMRGGQVYFLHNQVETIEKTAEDLQKLI 806 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + + + HG+M + + E +M+ F + LL+ TT+IE GIDV A+ II Sbjct: 807 PE---------ARVTVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTII 857 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GFL 619 ++ A++ GLAQLHQLRGRVGR + LL HP ++K++ RL + + ED GF Sbjct: 858 MDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAITKDAIKRLDAIASLEDLGAGFT 917 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG +QSG Sbjct: 918 LATHDLEIRGAGELLGDEQSG 938 >gi|229551616|ref|ZP_04440341.1| transcription-repair coupling factor [Lactobacillus rhamnosus LMS2-1] gi|229315020|gb|EEN80993.1| transcription-repair coupling factor [Lactobacillus rhamnosus LMS2-1] Length = 1182 Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 149/439 (33%), Positives = 240/439 (54%), Gaps = 23/439 (5%) Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270 N K EW R+ A E +A ++ L +++ +K G + + QK P Sbjct: 566 NVNKLGGTEWQKTKRKVAARIEDIADELIDLYAKREAEK--GYAFGPDDDLQQKFEDEFP 623 Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T Q + K+I +DM + M R+L GDVG GKT VAL A AV+ G Q I+ P Sbjct: 624 YPETPDQLRSAKEIKRDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAVDYGKQVAILVPT 683 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 ILAQQH++ +K + + + +++ + ++ + +G I++GTH L + Sbjct: 684 TILAQQHFDTMKDRFADFPVKIGLLSRFQTPHQNKMTIKGLKNGTIDIVVGTHRLLSKDV 743 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + L L+++DE+ RFGV+ + ++ Q + VL +TATPIPRTL ++ LG D+S I Sbjct: 744 AFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIET 803 Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R PI+T ++ N I E IER + G + +++ ++E+ +ER Sbjct: 804 PPTNRYPIQTFVMEQNPGVIREAIER---EMERGGQVFYLHNRVED---------MERTV 851 Query: 509 SLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 S E +SI HG+M++ E+V+ F +G +L+ TT+IE G+D+ +A+ +IIE Sbjct: 852 SQLEELVPDASIGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIE 911 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIA 621 NA+H+GL+QL+QLRGR+GR ++ +Y P L++ + RL +K+ TE GF IA Sbjct: 912 NADHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIA 971 Query: 622 EEDLKQRKEGEILGIKQSG 640 DL R G +LG +Q G Sbjct: 972 MRDLSIRGAGNLLGKQQHG 990 >gi|152969666|ref|YP_001334775.1| transcription-repair coupling factor [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150954515|gb|ABR76545.1| transcription-repair ATP-dependent coupling factor [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 1152 Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 151/409 (36%), Positives = 221/409 (54%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + + Q PF T Q AI +L DM Q M R++ Sbjct: 572 LLDIYAQRAAKAGFAFKHDREQYQLFCDGFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 631 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AVE Q ++ P +LAQQHY+ + N + +E+++ Sbjct: 632 GDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFR 691 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + LE+ A G+ I+IGTH L Q ++ L L+IVDE+HRFGV+ + ++ Sbjct: 692 SAKEQAQILEQAAEGKIDILIGTHKLLQSEVKLRDLGLLIVDEEHRFGVRHKERIKAMRA 751 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I PA R +KT + D ++ R + +L Sbjct: 752 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDALVVR-EAIL 807 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ +E N + ++ L + IAI HG+M + + E VM+ Sbjct: 808 RETLRGGQVYYLFNDVE-----NIQKAADKLAELVPE--ARIAIGHGQMRERELERVMND 860 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ TT+IE GID+ A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 861 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 920 Query: 597 -HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 HP ++ ++ RL + + ED GF +A DL+ R GE+LG QSG Sbjct: 921 PHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 969 >gi|290510825|ref|ZP_06550195.1| transcription-repair coupling factor [Klebsiella sp. 1_1_55] gi|289777541|gb|EFD85539.1| transcription-repair coupling factor [Klebsiella sp. 1_1_55] Length = 1148 Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 151/409 (36%), Positives = 221/409 (54%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + + Q PF T Q AI +L DM Q M R++ Sbjct: 568 LLDIYAQRAAKAGFAFKHDREQYQLFCDGFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 627 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AVE Q ++ P +LAQQHY+ + N + +E+++ Sbjct: 628 GDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFR 687 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + LE+ A G+ I+IGTH L Q ++ L L+IVDE+HRFGV+ + ++ Sbjct: 688 SAKEQAQILEQAAEGKIDILIGTHKLLQSEVKLRDLGLLIVDEEHRFGVRHKERIKAMRA 747 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I PA R +KT + D ++ R + +L Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDALVVR-EAIL 803 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ +E N + ++ L + IAI HG+M + + E VM+ Sbjct: 804 RETLRGGQVYYLFNDVE-----NIQKAADKLAELVPE--ARIAIGHGQMRERELERVMND 856 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ TT+IE GID+ A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 916 Query: 597 -HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 HP ++ ++ RL + + ED GF +A DL+ R GE+LG QSG Sbjct: 917 PHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 965 >gi|330869865|gb|EGH04574.1| transcription-repair coupling factor [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330986245|gb|EGH84348.1| transcription-repair coupling factor [Pseudomonas syringae pv. lachrymans str. M301315] gi|331013175|gb|EGH93231.1| transcription-repair coupling factor [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 1150 Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 145/380 (38%), Positives = 211/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q++ I+ + DM M R++ GDVG GKT VA+ A AV G Q I+ Sbjct: 599 GFPFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A+ +A G+ I+IGTH L Q Sbjct: 659 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQ 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D ++ L LVI+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 719 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R ++T ++ N+ + E L L G + Y++ ++ EK ++ +V Sbjct: 779 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 837 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + I I HG+M + + E VM F + +LIA+T+IE GIDV A+ III Sbjct: 838 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 888 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL P ++ ++ RL + NT+D GF++ Sbjct: 889 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVL 948 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 949 ATNDLEIRGAGELLGDGQSG 968 >gi|206576037|ref|YP_002239264.1| transcription-repair coupling factor [Klebsiella pneumoniae 342] gi|206565095|gb|ACI06871.1| transcription-repair coupling factor [Klebsiella pneumoniae 342] Length = 1148 Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 151/409 (36%), Positives = 221/409 (54%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + + Q PF T Q AI +L DM Q M R++ Sbjct: 568 LLDIYAQRAAKAGFAFKHDREQYQLFCDGFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 627 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AVE Q ++ P +LAQQHY+ + N + +E+++ Sbjct: 628 GDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFR 687 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + LE+ A G+ I+IGTH L Q ++ L L+IVDE+HRFGV+ + ++ Sbjct: 688 SAKEQAQILEQAAEGKIDILIGTHKLLQSEVKLRDLGLLIVDEEHRFGVRHKERIKAMRA 747 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I PA R +KT + D ++ R + +L Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDALVVR-EAIL 803 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ +E N + ++ L + IAI HG+M + + E VM+ Sbjct: 804 RETLRGGQVYYLFNDVE-----NIQKAADKLAELVPE--ARIAIGHGQMRERELERVMND 856 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ TT+IE GID+ A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 916 Query: 597 -HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 HP ++ ++ RL + + ED GF +A DL+ R GE+LG QSG Sbjct: 917 PHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 965 >gi|288941951|ref|YP_003444191.1| transcription-repair coupling factor [Allochromatium vinosum DSM 180] gi|288897323|gb|ADC63159.1| transcription-repair coupling factor [Allochromatium vinosum DSM 180] Length = 1160 Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 141/381 (37%), Positives = 215/381 (56%), Gaps = 23/381 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T Q+ AI+ +L DM+ M R++ GDVG GKT VA+ A AV +G Q V++ P Sbjct: 614 PFEETPDQQRAIESVLADMADPKPMDRVVCGDVGFGKTEVAMRAAFMAVHSGRQVVVLVP 673 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQH+E + + VE ++ ++ L+ +A G I++GTH L Q + Sbjct: 674 TTLLAQQHFENFSDRFADWPVRVESLSRFRTAKEQKAVLDGLADGTVDIVVGTHKLLQPT 733 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ L L I+DE+HRFGV+ + +L + VL +TATPIPRTL + G D+S I Sbjct: 734 IRFKNLGLAIIDEEHRFGVRHKEQLKNLRSEVDVLTLTATPIPRTLNMAMSGLRDLSIIA 793 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVV 504 P R PIKT + P N D +++ + VL E G + Y++ ++E E + +++ Sbjct: 794 TPPVERHPIKTFVSPWN--DALVQ--EAVLRELKRGGQVYFLHNEVETIENQAQKLEALI 849 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + +A+ HG+M + + E +M F + LL+ TT+IE GIDV A+ I+ Sbjct: 850 PE---------ARVAVAHGQMRERELERIMRDFYHQRSNLLVCTTIIESGIDVPSANTIL 900 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFL 619 I A+ GLAQLHQLRGRVGR + L+ P ++ ++ RL +++ ED GF Sbjct: 901 INRADKLGLAQLHQLRGRVGRSHHRAYAYLITPPTKAMTADAKKRLEAIESMEDLGAGFT 960 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG +QSG Sbjct: 961 LATHDLEIRGAGELLGDEQSG 981 >gi|289648570|ref|ZP_06479913.1| transcription-repair coupling factor [Pseudomonas syringae pv. aesculi str. 2250] Length = 1150 Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 145/380 (38%), Positives = 211/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q++ I+ + DM M R++ GDVG GKT VA+ A AV G Q I+ Sbjct: 599 GFPFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A+ +A G+ I+IGTH L Q Sbjct: 659 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQ 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D ++ L LVI+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 719 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R ++T ++ N+ + E L L G + Y++ ++ EK ++ +V Sbjct: 779 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 837 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + I I HG+M + + E VM F + +LIA+T+IE GIDV A+ III Sbjct: 838 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 888 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL P ++ ++ RL + NT+D GF++ Sbjct: 889 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVL 948 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 949 ATNDLEIRGAGELLGDGQSG 968 >gi|330982230|gb|EGH80333.1| transcription-repair coupling factor [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 1150 Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 145/380 (38%), Positives = 210/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q++ I + DM M R++ GDVG GKT VA+ A AV G Q I+ Sbjct: 599 GFPFEETPDQQTTIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A+ +A G+ I+IGTH L Q Sbjct: 659 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLQ 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D ++ L LVI+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 719 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R ++T ++ N+ + E L L G + Y++ ++ EK ++ +V Sbjct: 779 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 837 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + I I HG+M + + E VM F + +LIA+T+IE GIDV A+ III Sbjct: 838 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 888 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL P ++ ++ RL + NT+D GF++ Sbjct: 889 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITHDAEKRLEAIANTQDLGAGFVL 948 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 949 ATNDLEIRGAGELLGDGQSG 968 >gi|320324788|gb|EFW80860.1| transcription-repair coupling factor [Pseudomonas syringae pv. glycinea str. B076] gi|320329153|gb|EFW85150.1| transcription-repair coupling factor [Pseudomonas syringae pv. glycinea str. race 4] Length = 1150 Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 145/380 (38%), Positives = 210/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q++ I + DM M R++ GDVG GKT VA+ A AV G Q I+ Sbjct: 599 GFPFEETPDQQTTIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A+ +A G+ I+IGTH L Q Sbjct: 659 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQ 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D ++ L LVI+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 719 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R ++T ++ N+ + E L L G + Y++ ++ EK ++ +V Sbjct: 779 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 837 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + I I HG+M + + E VM F + +LIA+T+IE GIDV A+ III Sbjct: 838 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 888 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL P ++ ++ RL + NT+D GF++ Sbjct: 889 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVL 948 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 949 ATNDLEIRGAGELLGDGQSG 968 >gi|288936122|ref|YP_003440181.1| transcription-repair coupling factor [Klebsiella variicola At-22] gi|288890831|gb|ADC59149.1| transcription-repair coupling factor [Klebsiella variicola At-22] Length = 1148 Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 151/409 (36%), Positives = 221/409 (54%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + + Q PF T Q AI +L DM Q M R++ Sbjct: 568 LLDIYAQRAAKAGFAFKHDREQYQLFCDGFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 627 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AVE Q ++ P +LAQQHY+ + N + +E+++ Sbjct: 628 GDVGFGKTEVAMRAAFIAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFR 687 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + LE+ A G+ I+IGTH L Q ++ L L+IVDE+HRFGV+ + ++ Sbjct: 688 SAKEQAQILEQAAEGKIDILIGTHKLLQSEVKLRDLGLLIVDEEHRFGVRHKERIKAMRA 747 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I PA R +KT + D ++ R + +L Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDALVVR-EAIL 803 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ +E N + ++ L + IAI HG+M + + E VM+ Sbjct: 804 RETLRGGQVYYLFNDVE-----NIQKAADKLAELVPE--ARIAIGHGQMRERELERVMND 856 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ TT+IE GID+ A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 916 Query: 597 -HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 HP ++ ++ RL + + ED GF +A DL+ R GE+LG QSG Sbjct: 917 PHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 965 >gi|325295172|ref|YP_004281686.1| transcription-repair coupling factor [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065620|gb|ADY73627.1| transcription-repair coupling factor [Desulfurobacterium thermolithotrophum DSM 11699] Length = 1059 Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 146/382 (38%), Positives = 213/382 (55%), Gaps = 17/382 (4%) Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 R P+ PT Q AI+++ +DM + M R++ GDVG GKT VA+ A AV G Q + Sbjct: 530 RRFPYKPTPDQLKAIREVYKDMESEKPMDRLICGDVGFGKTEVAMRAAMKAVTDGRQVAV 589 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 + P ILA QHY KK + + +E I+ + +++ LE++ +G+ IIIGTH L Sbjct: 590 IVPTTILADQHYRTFKKRFKGFPVKIEAISRFKTKKEQKEILEKLKNGEIDIIIGTHRLT 649 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 QD +++ L L+I+DE+HRFGV+ + KLT+ VL ++ATPIPRTL G DIS Sbjct: 650 QDDVEFKNLGLLIIDEEHRFGVKTKEKLTKIKKNLDVLYLSATPIPRTLYSALSGFRDIS 709 Query: 447 KITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504 I P GR+ K V+ + + +ER L + + + I+E + + V Sbjct: 710 VIETPPVGRRGTKVVVSKYSDRILKTAVER---ELKRNGQVFIVQNDIDELEPLKIK-VE 765 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 E F ++ + I+HG+M E VM F G K+LIAT++IE G+D+ A+ +I Sbjct: 766 EMFPNI------PVDIVHGQMKTEKIEKVMHKFFEGDIKILIATSIIESGLDIPSANTLI 819 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFL 619 + AE FGL+QL+QLRGRVGRG E C LL L+ + RL +K GF Sbjct: 820 VIGAERFGLSQLYQLRGRVGRGIEKGYCYLLTSSKGKLTPEAVKRLEAMKKVSPVGGGFQ 879 Query: 620 IAEEDLKQRKEGEILGIKQSGM 641 +A +DL+ R G +LG KQSG Sbjct: 880 LAMKDLEIRGAGTLLGPKQSGF 901 >gi|302184811|ref|ZP_07261484.1| transcription-repair coupling factor [Pseudomonas syringae pv. syringae 642] Length = 1150 Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 145/380 (38%), Positives = 210/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q++ I + DM M R++ GDVG GKT VA+ A AV G Q I+ Sbjct: 599 GFPFEETPDQQTTIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A+ +A G+ I+IGTH L Q Sbjct: 659 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLQ 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D ++ L LVI+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 719 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R ++T ++ N+ + E L L G + Y++ ++ EK ++ +V Sbjct: 779 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 837 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + I I HG+M + + E VM F + +LIA+T+IE GIDV A+ III Sbjct: 838 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 888 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL P ++ ++ RL + NT+D GF++ Sbjct: 889 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITHDAEKRLEAIANTQDLGAGFVL 948 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 949 ATNDLEIRGAGELLGDGQSG 968 >gi|218440658|ref|YP_002378987.1| transcription-repair coupling factor [Cyanothece sp. PCC 7424] gi|218173386|gb|ACK72119.1| transcription-repair coupling factor [Cyanothece sp. PCC 7424] Length = 1168 Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 139/386 (36%), Positives = 222/386 (57%), Gaps = 18/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q++ + P+ PT Q AI+++ +DM + M R++ GDVG GKT VA+ A+ AV +G Sbjct: 613 QELEDSFPYQPTPDQIKAIQEVKRDMMNERPMDRLVCGDVGFGKTEVAVRAIFKAVTSGN 672 Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q +AP IL QQHY +K+ I + ++ + R L+R+A G+ I++G Sbjct: 673 KQVAFLAPTTILTQQHYHTLKERFAPYPINIGLLNRFRTPSENRDILQRLATGELDIVVG 732 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L + +++ L L+++DE+ RFGV Q+ K+ T VL +TATPIPRTL ++ G Sbjct: 733 THQLLSNKVKFKDLGLLVIDEEQRFGVNQKEKIKTLKTQVDVLTLTATPIPRTLYMSLSG 792 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESN 499 ++S IT P R+PIKT + P N D + ++ L G + +++ P++E E+ + Sbjct: 793 VREMSLITTPPPSRRPIKTHLTPYNP-DALRTAIRNELDRGGQIFYVVPRVEGIEEVAAE 851 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 R ++ T+ IAI HG+MS + E M +F NG +L+ TT+IE G+D+ Sbjct: 852 IRDMIP---------TARIAIAHGQMSVSELEPTMLAFNNGEADILVCTTIIESGLDIPR 902 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLK---NT 614 + II+E+A+ FGL+QL+QLRGRVGR + L+Y L++ + RL L+ Sbjct: 903 VNTIIVEDAQKFGLSQLYQLRGRVGRSGIQAHAWLVYPHKAALTETARQRLRALQEFTQL 962 Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSG 640 G+ +A D++ R G +LG +QSG Sbjct: 963 GSGYQLATRDMEIRGVGNLLGAEQSG 988 >gi|237731096|ref|ZP_04561577.1| transcription-repair coupling factor [Citrobacter sp. 30_2] gi|226906635|gb|EEH92553.1| transcription-repair coupling factor [Citrobacter sp. 30_2] Length = 1148 Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 146/386 (37%), Positives = 214/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQH++ + N + +E+++ + + LE++A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQVAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQADVKLKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDNLVVR-EAILREVLRGGQVYYLFNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + +R L + I I HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IQKTADRLAELVPE--ARIGIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEDQSG 965 >gi|199598792|ref|ZP_03212204.1| Transcription-repair coupling factor (superfamily II helicase) [Lactobacillus rhamnosus HN001] gi|199590297|gb|EDY98391.1| Transcription-repair coupling factor (superfamily II helicase) [Lactobacillus rhamnosus HN001] Length = 1175 Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 149/439 (33%), Positives = 240/439 (54%), Gaps = 23/439 (5%) Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270 N K EW R+ A E +A ++ L +++ +K G + + QK P Sbjct: 559 NVNKLGGTEWQKTKRKVAARIEDIADELIDLYAKREAEK--GYAFGPDDDLQQKFEDEFP 616 Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T Q + K+I +DM + M R+L GDVG GKT VAL A AV+ G Q I+ P Sbjct: 617 YPETPDQLRSAKEIKRDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAVDYGKQVAILVPT 676 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 ILAQQH++ +K + + + +++ + ++ + +G I++GTH L + Sbjct: 677 TILAQQHFDTMKDRFADFPVKIGLLSRFQTPHQNKMTIKGLKNGTIDIVVGTHRLLSKDV 736 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + L L+++DE+ RFGV+ + ++ Q + VL +TATPIPRTL ++ LG D+S I Sbjct: 737 AFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIET 796 Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R PI+T ++ N I E IER + G + +++ ++E+ +ER Sbjct: 797 PPTNRYPIQTFVMEQNPGVIREAIER---EMERGGQVFYLHNRVED---------MERTV 844 Query: 509 SLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 S E +SI HG+M++ E+V+ F +G +L+ TT+IE G+D+ +A+ +IIE Sbjct: 845 SQLEELVPDASIGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIE 904 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIA 621 NA+H+GL+QL+QLRGR+GR ++ +Y P L++ + RL +K+ TE GF IA Sbjct: 905 NADHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIA 964 Query: 622 EEDLKQRKEGEILGIKQSG 640 DL R G +LG +Q G Sbjct: 965 MRDLSIRGAGNLLGKQQHG 983 >gi|270490329|ref|ZP_06207403.1| transcription-repair coupling factor [Yersinia pestis KIM D27] gi|270338833|gb|EFA49610.1| transcription-repair coupling factor [Yersinia pestis KIM D27] Length = 901 Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 145/386 (37%), Positives = 212/386 (54%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q ++ PF T QE AI +L DM Q M R++ GDVG GKT VA+ A AV Sbjct: 344 QLFCQSFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVTNNK 403 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQH++ + + +E+++ ++ LE+ A G+ I+IGT Sbjct: 404 QVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMLSRFRSAKEQQVILEQAAEGKIDILIGT 463 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q + ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 464 HKLLQSDLHWHDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 523 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 524 RDLSIIATPPARRLAVKTF---VREYDSLVIR-EAILREILRGGQVYYLYNDVE-----N 574 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 V ++ L + I I HG+M + D E VM+ F + +L+ TT+IE GID+ Sbjct: 575 IEKVTQKLAELVPE--ARITIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPS 632 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616 A+ IIIE A+H GLAQLHQLRGRVGR + LL P +S ++ RL + + ED Sbjct: 633 ANTIIIERADHLGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSTDAKKRLEAIASLEDL 692 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 693 GAGFALATHDLEIRGAGELLGEDQSG 718 >gi|213026773|ref|ZP_03341220.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 503 Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 98 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 157 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+++ + + L A G+ I+IGT Sbjct: 158 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 217 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 218 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 277 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 278 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 328 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 329 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 386 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 387 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTADAQKRLEAIASLEDL 446 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 447 GAGFALATHDLEIRGAGELLGEEQSG 472 >gi|192358851|ref|YP_001982241.1| transcription-repair coupling protein Mfd [Cellvibrio japonicus Ueda107] gi|190685016|gb|ACE82694.1| transcription-repair coupling protein Mfd [Cellvibrio japonicus Ueda107] Length = 1184 Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 143/383 (37%), Positives = 215/383 (56%), Gaps = 23/383 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + PF T Q+ AI+ +++DM M R++ GDVG GKT VA+ A A AG Q I+ Sbjct: 634 SFPFEETPDQQRAIEAVVKDMLSPKPMDRLVCGDVGFGKTEVAMRAAFVASHAGKQVAIL 693 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 AP +LAQQHYE +K I +E+++ + LER+A G+ II+GTH L Q Sbjct: 694 APTTLLAQQHYESLKDRFAEWPITIEVLSRFRTTKEVNQVLERLAEGKVDIIVGTHKLLQ 753 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L L+I+DE+HRFGV+Q+ ++ +L +TATPIPRTL ++ G D+S Sbjct: 754 PDIKFKNLGLLIIDEEHRFGVRQKEQIKALRAEIDILTLTATPIPRTLNMSMAGIRDLSI 813 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502 I PA R +KT + DE + + + +L E G + Y++ +++ EK + Sbjct: 814 IATPPARRLSVKTF---VRTYDEAVIK-EAILREILRGGQVYYLHNEVDTIEKVARELQE 869 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 ++ + IA+ HG+M + D E VM F + +++ TT+IE GID+ A+ Sbjct: 870 LIPE---------ARIAVGHGQMRERDLERVMSDFYHKRFNIMVCTTIIETGIDIPSANT 920 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---G 617 III A+ FGLAQLHQLRGRVGR + LL ++ ++ RL + ED G Sbjct: 921 IIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPERRAMTDDAVKRLEAISAAEDLGAG 980 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F +A D++ R GE+LG +QSG Sbjct: 981 FTLATYDMEIRGAGELLGEEQSG 1003 >gi|55821999|ref|YP_140440.1| transcription repair coupling factor [Streptococcus thermophilus CNRZ1066] gi|55737984|gb|AAV61625.1| transcription repair coupling factor [Streptococcus thermophilus CNRZ1066] Length = 1168 Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 144/379 (37%), Positives = 217/379 (57%), Gaps = 19/379 (5%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 ++ T Q +IK+I DM M R+L GDVG GKT VA+ A AV G Q I+ P Sbjct: 612 YAETVDQLRSIKEIKADMESDKPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPT 671 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA QHY K+ +N + V+ ++ + + + ++ +A G+ IIIGTH L + Sbjct: 672 TVLAHQHYMNFKERFENHAVEVDELSRFRSKKEQNETIKNLAKGRIDIIIGTHRLLSKDV 731 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L L+++DE+ RFGV+ + KL + VL +TATPIPRTL ++ LG D+S I Sbjct: 732 KFSDLGLLVIDEEQRFGVKHKEKLKELKAKVDVLTLTATPIPRTLHMSMLGIRDLSIIET 791 Query: 451 KPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R P++T ++ N I E I R + G + ++I ++E ++ ++ + Sbjct: 792 APTNRYPVQTYVMETNPGLIREAILR---EMDRGGQIFYIYNRVE--------TIDQKVS 840 Query: 509 SLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 LHE + I +HG+MS++ E+ + F NG +L+ATT+IE GID+ + + ++IEN Sbjct: 841 ELHELVPEARIGFVHGQMSEVMLENTLLDFLNGDYDILVATTIIETGIDIPNVNTLLIEN 900 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622 A+H GL+ L+QLRGRVGR I+ L+YHP L++ S RL +K TE GF IA Sbjct: 901 ADHMGLSTLYQLRGRVGRSNRIAYAYLMYHPDKVLTEVSEKRLDAIKGFTELGSGFKIAM 960 Query: 623 EDLKQRKEGEILGIKQSGM 641 DL R G ILG QSG Sbjct: 961 RDLSIRGAGNILGASQSGF 979 >gi|329999583|ref|ZP_08303456.1| transcription-repair coupling factor [Klebsiella sp. MS 92-3] gi|328538286|gb|EGF64428.1| transcription-repair coupling factor [Klebsiella sp. MS 92-3] Length = 1126 Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 151/409 (36%), Positives = 221/409 (54%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + + Q PF T Q AI +L DM Q M R++ Sbjct: 546 LLDIYAQRAAKAGFAFKHDREQYQLFCDGFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 605 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AVE Q ++ P +LAQQHY+ + N + +E+++ Sbjct: 606 GDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFR 665 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + LE+ A G+ I+IGTH L Q ++ L L+IVDE+HRFGV+ + ++ Sbjct: 666 SAKEQAQILEQAAEGKIDILIGTHKLLQSEVKLRDLGLLIVDEEHRFGVRHKERIKAMRA 725 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I PA R +KT + D ++ R + +L Sbjct: 726 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDALVVR-EAIL 781 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ +E N + ++ L + IAI HG+M + + E VM+ Sbjct: 782 RETLRGGQVYYLFNDVE-----NIQKAADKLAELVPE--ARIAIGHGQMRERELERVMND 834 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ TT+IE GID+ A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 835 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 894 Query: 597 -HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 HP ++ ++ RL + + ED GF +A DL+ R GE+LG QSG Sbjct: 895 PHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 943 >gi|330973230|gb|EGH73296.1| transcription-repair coupling factor [Pseudomonas syringae pv. aceris str. M302273PT] Length = 1150 Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 145/380 (38%), Positives = 210/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q++ I + DM M R++ GDVG GKT VA+ A AV G Q I+ Sbjct: 599 GFPFEETPDQQTTIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A+ +A G+ I+IGTH L Q Sbjct: 659 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQ 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D ++ L LVI+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 719 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R ++T ++ N+ + E L L G + Y++ ++ EK ++ +V Sbjct: 779 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 837 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + I I HG+M + + E VM F + +LIA+T+IE GIDV A+ III Sbjct: 838 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 888 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL P ++ ++ RL + NT+D GF++ Sbjct: 889 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITHDAEKRLEAIANTQDLGAGFVL 948 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 949 ATNDLEIRGAGELLGDGQSG 968 >gi|213583692|ref|ZP_03365518.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 468 Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Sbjct: 64 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 123 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+++ + + L A G+ I+IGT Sbjct: 124 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 183 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 184 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 243 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 244 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 294 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 295 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 352 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + + ED Sbjct: 353 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTADAQKRLEAIASLEDL 412 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 413 GAGFALATHDLEIRGAGELLGEEQSG 438 >gi|71736642|ref|YP_274082.1| transcription-repair coupling factor [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557195|gb|AAZ36406.1| transcription-repair coupling factor [Pseudomonas syringae pv. phaseolicola 1448A] Length = 1150 Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 145/380 (38%), Positives = 210/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q++ I + DM M R++ GDVG GKT VA+ A AV G Q I+ Sbjct: 599 GFPFEETPDQQTTIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A+ +A G+ I+IGTH L Q Sbjct: 659 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQ 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D ++ L LVI+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 719 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R ++T ++ N+ + E L L G + Y++ ++ EK ++ +V Sbjct: 779 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 837 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + I I HG+M + + E VM F + +LIA+T+IE GIDV A+ III Sbjct: 838 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 888 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL P ++ ++ RL + NT+D GF++ Sbjct: 889 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVL 948 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 949 ATNDLEIRGAGELLGDGQSG 968 >gi|22125678|ref|NP_669101.1| transcription-repair coupling factor [Yersinia pestis KIM 10] gi|45441565|ref|NP_993104.1| transcription-repair coupling factor [Yersinia pestis biovar Microtus str. 91001] gi|108807895|ref|YP_651811.1| transcription-repair coupling factor [Yersinia pestis Antiqua] gi|108812169|ref|YP_647936.1| transcription-repair coupling factor [Yersinia pestis Nepal516] gi|145599106|ref|YP_001163182.1| transcription-repair coupling factor [Yersinia pestis Pestoides F] gi|149366410|ref|ZP_01888444.1| transcription-repair coupling factor [Yersinia pestis CA88-4125] gi|162421681|ref|YP_001607245.1| transcription-repair coupling factor [Yersinia pestis Angola] gi|165925529|ref|ZP_02221361.1| transcription-repair coupling factor [Yersinia pestis biovar Orientalis str. F1991016] gi|165938427|ref|ZP_02226984.1| transcription-repair coupling factor [Yersinia pestis biovar Orientalis str. IP275] gi|166008143|ref|ZP_02229041.1| transcription-repair coupling factor [Yersinia pestis biovar Antiqua str. E1979001] gi|166210634|ref|ZP_02236669.1| transcription-repair coupling factor [Yersinia pestis biovar Antiqua str. B42003004] gi|167401750|ref|ZP_02307241.1| transcription-repair coupling factor [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421853|ref|ZP_02313606.1| transcription-repair coupling factor [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426319|ref|ZP_02318072.1| transcription-repair coupling factor [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218928761|ref|YP_002346636.1| transcription-repair coupling factor [Yersinia pestis CO92] gi|229841610|ref|ZP_04461768.1| transcription-repair coupling factor [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843727|ref|ZP_04463870.1| transcription-repair coupling factor [Yersinia pestis biovar Orientalis str. India 195] gi|229894469|ref|ZP_04509651.1| transcription-repair coupling factor [Yersinia pestis Pestoides A] gi|229902491|ref|ZP_04517610.1| transcription-repair coupling factor [Yersinia pestis Nepal516] gi|294504177|ref|YP_003568239.1| transcription-repair coupling factor [Yersinia pestis Z176003] gi|21958592|gb|AAM85352.1|AE013781_3 transcription-repair coupling factor [Yersinia pestis KIM 10] gi|45436426|gb|AAS61981.1| transcription-repair coupling factor [Yersinia pestis biovar Microtus str. 91001] gi|108775817|gb|ABG18336.1| transcription-repair coupling factor [Yersinia pestis Nepal516] gi|108779808|gb|ABG13866.1| transcription-repair coupling factor [Yersinia pestis Antiqua] gi|115347372|emb|CAL20270.1| transcription-repair coupling factor [Yersinia pestis CO92] gi|145210802|gb|ABP40209.1| transcription-repair coupling factor [Yersinia pestis Pestoides F] gi|149290784|gb|EDM40859.1| transcription-repair coupling factor [Yersinia pestis CA88-4125] gi|162354496|gb|ABX88444.1| transcription-repair coupling factor [Yersinia pestis Angola] gi|165913542|gb|EDR32162.1| transcription-repair coupling factor [Yersinia pestis biovar Orientalis str. IP275] gi|165922638|gb|EDR39789.1| transcription-repair coupling factor [Yersinia pestis biovar Orientalis str. F1991016] gi|165992525|gb|EDR44826.1| transcription-repair coupling factor [Yersinia pestis biovar Antiqua str. E1979001] gi|166207814|gb|EDR52294.1| transcription-repair coupling factor [Yersinia pestis biovar Antiqua str. B42003004] gi|166960338|gb|EDR56359.1| transcription-repair coupling factor [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048855|gb|EDR60263.1| transcription-repair coupling factor [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054674|gb|EDR64478.1| transcription-repair coupling factor [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229680537|gb|EEO76634.1| transcription-repair coupling factor [Yersinia pestis Nepal516] gi|229689335|gb|EEO81398.1| transcription-repair coupling factor [Yersinia pestis biovar Orientalis str. India 195] gi|229694073|gb|EEO84121.1| transcription-repair coupling factor [Yersinia pestis biovar Orientalis str. PEXU2] gi|229703488|gb|EEO90505.1| transcription-repair coupling factor [Yersinia pestis Pestoides A] gi|262362294|gb|ACY59015.1| transcription-repair coupling factor [Yersinia pestis D106004] gi|294354636|gb|ADE64977.1| transcription-repair coupling factor [Yersinia pestis Z176003] gi|320014765|gb|ADV98336.1| transcription-repair coupling factor [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 1148 Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 145/386 (37%), Positives = 212/386 (54%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q ++ PF T QE AI +L DM Q M R++ GDVG GKT VA+ A AV Sbjct: 591 QLFCQSFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVTNNK 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQH++ + + +E+++ ++ LE+ A G+ I+IGT Sbjct: 651 QVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMLSRFRSAKEQQVILEQAAEGKIDILIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q + ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 711 HKLLQSDLHWHDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVIR-EAILREILRGGQVYYLYNDVE-----N 821 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 V ++ L + I I HG+M + D E VM+ F + +L+ TT+IE GID+ Sbjct: 822 IEKVTQKLAELVPE--ARITIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPS 879 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616 A+ IIIE A+H GLAQLHQLRGRVGR + LL P +S ++ RL + + ED Sbjct: 880 ANTIIIERADHLGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSTDAKKRLEAIASLEDL 939 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 940 GAGFALATHDLEIRGAGELLGEDQSG 965 >gi|328473273|gb|EGF44121.1| transcription-repair coupling factor [Vibrio parahaemolyticus 10329] Length = 1153 Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 144/383 (37%), Positives = 215/383 (56%), Gaps = 23/383 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI +L DM Q M R++ GDVG GKT VA+ A A + Q ++ Sbjct: 599 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ ++ L+ +A G+ I++GTH L Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLS 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 719 SDIKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502 I PA R IKT + R + V++ + VL E G + Y++ Q+E EK + + Sbjct: 779 IATPPARRLAIKTFV--REREESVVQ--EAVLREIMRGGQVYFLHNQVETIEKTAEDLQK 834 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 ++ + I + HG+M + + E +M+ F + +L+ TT+IE GIDV A+ Sbjct: 835 LIPE---------ARITVAHGQMRERELERIMNDFYHQRFNVLVCTTIIETGIDVPTANT 885 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---G 617 II++ A++ GLAQLHQLRGRVGR + LL HP ++K++ RL + + ED G Sbjct: 886 IIMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAG 945 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F +A DL+ R GE+LG +QSG Sbjct: 946 FTLATHDLEIRGAGELLGDEQSG 968 >gi|270284301|ref|ZP_05965889.2| ATP-dependent DNA helicase [Bifidobacterium gallicum DSM 20093] gi|270277510|gb|EFA23364.1| ATP-dependent DNA helicase [Bifidobacterium gallicum DSM 20093] Length = 852 Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 147/376 (39%), Positives = 204/376 (54%), Gaps = 31/376 (8%) Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408 Q+ V ++TG M A RR+ L A G+ I+I THA F + Q L L +VDEQHRFGV Sbjct: 475 QVPVYLLTGGMKLAERRRVLAAAAGGEPCIVIATHAAFSKTFQAPNLALAVVDEQHRFGV 534 Query: 409 QQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII---P 464 +QR L K PH+L+MTATPIPRT +T GD+DIS++TE P GRKPI+T I+ Sbjct: 535 EQRETLRAKGERDPHLLVMTATPIPRTAAMTWFGDLDISELTELPGGRKPIRTFIVQEAD 594 Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN----------------------FRS 502 R+ + ++ + G++AY ICP+I+ +E S Sbjct: 595 ATRMGSMFALIRQRIDAGERAYVICPRIDADEEQPDQGEGDGPQLFDDGEESTPKPPLHS 654 Query: 503 VVERFNSLHE--HFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 V E F L F + A + GR D K +VM F +G +L+ATTV+EVG+DV Sbjct: 655 VEEMFTRLQHLPQFAGVAFARLTGRDDDATKNAVMADFSSGRTPVLVATTVVEVGVDVPQ 714 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619 AS I+I +A+ +GL+QLHQLRGRVGRG S L+ + RL ++ T DG Sbjct: 715 ASCIVIFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEDGTVAQERLMAIEGTLDGAQ 774 Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTSVRG 678 IA++DL+ R G++LG QSG L + D+ L+ AR ++ +L D DL Sbjct: 775 IAQKDLELRGAGDVLGDAQSGGKSSLKLLRVVKDAGLIAQARDESAELLEADHDLHQWP- 833 Query: 679 QSIRILLYLYQYNEAF 694 Q +L + NEAF Sbjct: 834 QLAGAVLDFTRGNEAF 849 Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/145 (37%), Positives = 83/145 (57%), Gaps = 4/145 (2%) Query: 203 AEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA 262 A+AF+ IH+P+ F+ A + ++E Q ALL+ R K+ + + Sbjct: 265 AQAFSQIHDPQTVHAFK---DAIGTMRFEEAFICQTALLMSRAAAKQGNAWSCT-DQVLR 320 Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 ++ + +PFS T Q+ I I DM Q + M R+LQG+VGSGKT+VA+ AM AV +G Sbjct: 321 EQFIEQLPFSLTAGQQLVIDAIAHDMEQDHPMQRLLQGEVGSGKTVVAVAAMLQAVGSGH 380 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQN 347 QAV++AP +LA+QH I K ++ Sbjct: 381 QAVLVAPTQVLAEQHAASIAKMVKD 405 >gi|228476811|ref|ZP_04061459.1| transcription-repair coupling factor [Streptococcus salivarius SK126] gi|228251548|gb|EEK10685.1| transcription-repair coupling factor [Streptococcus salivarius SK126] Length = 1168 Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 157/443 (35%), Positives = 240/443 (54%), Gaps = 27/443 (6%) Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266 N +++ R K + S E +A D+LL L R Q K G + + + Sbjct: 556 NKLNDGRFQKTKQKVSKQVEDIA-DDLLK----LYAERSQLK---GFAFSPDDDNQKDFE 607 Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 + ++ T+ Q +IK+I DM M R+L GDVG GKT VA+ A AV G Q I Sbjct: 608 DDFAYAETEDQLRSIKEIKADMESDKPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAI 667 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 + P +LA QHY K+ +N + V+ ++ + + + +E +A G+ IIIGTH L Sbjct: 668 LVPTTVLAHQHYLNFKERFENHAVEVDELSRFRSKKEQNETIENLAKGRIDIIIGTHRLL 727 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 +++ L L+++DE+ RFGV+ + KL + VL +TATPIPRTL ++ LG D+S Sbjct: 728 SKDVKFSDLGLLVIDEEQRFGVKHKEKLKELKAKVDVLTLTATPIPRTLHMSMLGIRDLS 787 Query: 447 KITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504 I P R P++T ++ N I E I R + G + +++ ++E ++ Sbjct: 788 IIETAPTNRYPVQTYVMETNPGLIREAILR---EMDRGGQIFYVYNRVE--------TID 836 Query: 505 ERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 ++ + LHE + I +HG+MS++ E+ + F NG +L+ATT+IE GID+ + + + Sbjct: 837 QKVSELHELVPEARIGFVHGQMSEVMLENTLLDFLNGDYDVLVATTIIETGIDISNVNTL 896 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGF 618 IENA+H GL+ L+QLRGRVGR I+ L+Y P L++ S RL +K TE GF Sbjct: 897 FIENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEVSEKRLDAIKGFTELGSGF 956 Query: 619 LIAEEDLKQRKEGEILGIKQSGM 641 IA DL R G ILG QSG Sbjct: 957 KIAMRDLSIRGAGNILGASQSGF 979 >gi|30350183|gb|AAP31491.1| putative ATP-dependent DNA helicase [Western X phytoplasma] Length = 634 Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 192/622 (30%), Positives = 313/622 (50%), Gaps = 64/622 (10%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEERIVTITGYI------SQHSSFQLQKRRPYKILLND 96 +L+FY P + I++ ++ I+ + G I S+ S +KR ++IL++D Sbjct: 28 ELIFYKPKKY-QNFLLSNINQAMDKEIINVIGKIVSEPISSKDDS--DKKRLNFQILIHD 84 Query: 97 GTGEITLLF--FYRKT--EMLKNVFFEGR------KITVTGKIKKLKNRIIMVHPHYIFH 146 +LF FY ++ KNVF +G+ IT + LKN+ + P Y Sbjct: 85 DVFLDVVLFNKFYLANFLKINKNVFIKGKYNLYNKSITASLISFDLKNKN-KIKPVYGIK 143 Query: 147 NSQDVNFPLIEAVYSLPTGLSVDLFKK---IIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203 N D S+ T L ++F K I E LS L L+K + Sbjct: 144 NITD---------RSITTFLK-NIFNKPQLKIKENLSPL----------FLKKYNLIDRK 183 Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQ 263 EA +H P+ + T +R ++E L IA L ++ K P+N + Sbjct: 184 EALMNLHLPKSQQLLHKT---LKRFKHEEAL--NIAQKLFEEKKKLPFKKPLNYGNYYIK 238 Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 I++ IPFS T Q+ +KDI D+ Q R++QGDVGSGKT+ +A A + A Q Sbjct: 239 TIMQKIPFSLTDKQKKIVKDIYSDLKQNYPTKRLIQGDVGSGKTITVFLAAIAVISAKKQ 298 Query: 324 AVIMAPIGILAQQHY-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 ++MAP ILA+QHY F K + + I + + + I + + ++IGT Sbjct: 299 VLMMAPTEILAKQHYLNFTKLFPEIKTIFITSKSKKKKTLQKA-----IYNNEYQMVIGT 353 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L + +++ L L+I+DE H+FG + K + + VL +TATPIP+TL + G Sbjct: 354 HLL--ANTEFHDLGLIIIDETHKFGTDVKDKTSFQNLQADVLYLTATPIPKTLAVMYFGL 411 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502 + S +TE P +K I T P ++++ LK ++ ++ Y + P I++ + Sbjct: 412 LKTSLLTEPPYAKKSIITERFPF---EDIVPLLKENQAKNEQTYIVVPAIKQNAKKFNIE 468 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 ++ F L E + ++HG+ ++ ++E +M F +L+ TT+IEVGID+ +A+ Sbjct: 469 TIKSF--LEEEKIQHLYVLHGKKNNQEQEDIMAGFVKNPQGILLDTTIIEVGIDIPNATT 526 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622 I+I A+ FGL+QLHQLRGRVGR E+ + C L+ P + RL++L+ +GF ++E Sbjct: 527 IVILGADRFGLSQLHQLRGRVGRNEKQNYCFLV---PENPTDNQRLNILEQESNGFKLSE 583 Query: 623 EDLKQRKEGEILGIKQSGMPKF 644 DLK R G+ +G KQSG K+ Sbjct: 584 FDLKNRGPGDFVGKKQSGYLKY 605 >gi|66045137|ref|YP_234978.1| transcription-repair coupling factor [Pseudomonas syringae pv. syringae B728a] gi|63255844|gb|AAY36940.1| Transcription-repair coupling factor [Pseudomonas syringae pv. syringae B728a] Length = 1150 Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 145/380 (38%), Positives = 210/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q++ I + DM M R++ GDVG GKT VA+ A AV G Q I+ Sbjct: 599 GFPFEETPDQQTTIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A+ +A G+ I+IGTH L Q Sbjct: 659 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQ 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D ++ L LVI+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 719 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R ++T ++ N+ + E L L G + Y++ ++ EK ++ +V Sbjct: 779 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 837 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + I I HG+M + + E VM F + +LIA+T+IE GIDV A+ III Sbjct: 838 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 888 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL P ++ ++ RL + NT+D GF++ Sbjct: 889 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITHDAEKRLEAIANTQDLGAGFVL 948 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 949 ATNDLEIRGAGELLGDGQSG 968 >gi|258540716|ref|YP_003175215.1| transcription-repair coupling factor [Lactobacillus rhamnosus Lc 705] gi|257152392|emb|CAR91364.1| Transcription-repair coupling factor [Lactobacillus rhamnosus Lc 705] Length = 1175 Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 149/439 (33%), Positives = 240/439 (54%), Gaps = 23/439 (5%) Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270 N K EW R+ A E +A ++ L +++ +K G + + QK P Sbjct: 559 NVNKLGGTEWQKTKRKVAARIEDIADELIDLYAKREAEK--GYAFGPDDDLQQKFEDEFP 616 Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T Q + K+I +DM + M R+L GDVG GKT VAL A AV+ G Q I+ P Sbjct: 617 YPETPDQLRSAKEIKRDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAVDYGKQVAILVPT 676 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 ILAQQH++ +K + + + +++ + ++ + +G I++GTH L + Sbjct: 677 TILAQQHFDTMKDRFADFPVKIGLLSRFQTPHQNKMTIKGLKNGTIDIVVGTHRLLSKDV 736 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + L L+++DE+ RFGV+ + ++ Q + VL +TATPIPRTL ++ LG D+S I Sbjct: 737 AFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIET 796 Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R PI+T ++ N I E IER + G + +++ ++E+ +ER Sbjct: 797 PPTNRYPIQTFVMEQNPGVIREAIER---EMERGGQVFYLHNRVED---------MERTV 844 Query: 509 SLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 S E +SI HG+M++ E+V+ F +G +L+ TT+IE G+D+ +A+ +IIE Sbjct: 845 SQLEELVPDASIGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIE 904 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIA 621 NA+H+GL+QL+QLRGR+GR ++ +Y P L++ + RL +K+ TE GF IA Sbjct: 905 NADHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIA 964 Query: 622 EEDLKQRKEGEILGIKQSG 640 DL R G +LG +Q G Sbjct: 965 MRDLSIRGAGNLLGKQQHG 983 >gi|260584473|ref|ZP_05852220.1| transcription-repair coupling factor [Granulicatella elegans ATCC 700633] gi|260157991|gb|EEW93060.1| transcription-repair coupling factor [Granulicatella elegans ATCC 700633] Length = 1174 Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 146/433 (33%), Positives = 242/433 (55%), Gaps = 27/433 (6%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQ 277 EW R+ E +A ++ L ++ +K + + QK + P+S T+ Q Sbjct: 568 EWAKTKRKVETKIEDIADELIELYAKRDAEKGYAFSKDT---VEQKEFEDAFPYSETQDQ 624 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 +I++I DM + M R+L GDVG GKT VA+ A+ A+ G QA ++ P ILA+QH Sbjct: 625 LRSIEEIKADMQKDKPMDRLLVGDVGYGKTEVAMRAVFKALMDGKQAAVLVPTTILAEQH 684 Query: 338 YE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 YE F++++ + + +++ + +++ +E + GQ ++IGTH + + + L Sbjct: 685 YENFVQRFA-DYPFKIGLLSRFRTKKEQQETIEGLQKGQVDVVIGTHRILSKDVNFLDLG 743 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 L++VDE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P+ R Sbjct: 744 LLVVDEEQRFGVKHKERLKQLKSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPSNRY 803 Query: 457 PIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHE 512 P++T ++ I + IER L+ G + +++ ++E EKK R +V Sbjct: 804 PVQTFVMEQQGITIKDGIER---ELARGGQVFYLYNRVETIEKKADELRQLVPE------ 854 Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 + + +IHG+MS+ E+++ F G +L+ TT+IE G+D+ + + + IENA+H G Sbjct: 855 ---ARVGVIHGQMSETTLENILYQFIEGEYDVLVTTTIIETGVDIPNVNTLFIENADHMG 911 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQ 627 L+QL+QLRGRVGR I+ L+Y P L++ RL +++ TE GF IA DL Sbjct: 912 LSQLYQLRGRVGRSNRIAYAYLMYQPDKTLTEVGEKRLQAMRDFTELGSGFKIAMRDLSI 971 Query: 628 RKEGEILGIKQSG 640 R G +LG +Q G Sbjct: 972 RGAGNLLGKQQHG 984 >gi|19703371|ref|NP_602933.1| transcription-repair coupling factor [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713435|gb|AAL94232.1| Transcription-repair coupling factor [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 981 Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 144/375 (38%), Positives = 224/375 (59%), Gaps = 13/375 (3%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF+ T +Q AI+D+ +DM M R++ GDVG GKT VA+ A AV G Q +++ P Sbjct: 452 PFTETPAQSKAIEDVKRDMESGKVMDRLICGDVGFGKTEVAIRATFKAVMDGKQVILLVP 511 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHYE + +N + +EI++ + + ++L+RI +G A ++IGTH L D Sbjct: 512 TTVLAEQHYERFSERFKNYPVHIEILSRVQSKKEQTESLKRIENGSADLVIGTHRLLSDD 571 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ + L+I+DE+ +FGV+ + KL + VL +TATPIPRTL L+ LG D+S I Sbjct: 572 IKFKDVGLLIIDEEQKFGVKAKEKLKKIKGDIDVLTLTATPIPRTLNLSLLGIRDLSVID 631 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P GR+ I T I N+ I E+I L + EG + ++I + ++ ES + + E Sbjct: 632 TSPEGRQKIHTEYIDNNKNFIKEII--LSEISREG-QVFYIFNSV-KRMESKVKEIRE-- 685 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 L E+ ++ IHG+M D + + F+NG +L+ATT+IE GID+ +A+ +IIE Sbjct: 686 -LLPEYI--KVSYIHGQMLPRDIKKNIQDFENGNVDVLVATTIIENGIDIENANTMIIEG 742 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEEDL 625 E GL+Q++QLRGR+GR + S C +L + +KN+ R ++ ++ G +A ED Sbjct: 743 VEKLGLSQVYQLRGRIGRSTKKSYCYMLTNENKTKNAKKREESIREFDNLTGIDLAMEDS 802 Query: 626 KQRKEGEILGIKQSG 640 K R GEILG KQ G Sbjct: 803 KIRGVGEILGEKQHG 817 >gi|186685547|ref|YP_001868743.1| transcription-repair coupling factor [Nostoc punctiforme PCC 73102] gi|186467999|gb|ACC83800.1| transcription-repair coupling factor [Nostoc punctiforme PCC 73102] Length = 1170 Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 137/381 (35%), Positives = 215/381 (56%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ PT Q A++D+ +DM M R++ GDVG GKT VA+ A+ AV AG Q ++ Sbjct: 618 SFPYQPTTDQLKAVQDVKRDMESDRPMDRLVCGDVGFGKTEVAIRAVFKAVTAGKQVALL 677 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 AP IL QQHY +K+ + V ++ RR +R+A G+ +++GT L Sbjct: 678 APTTILTQQHYHTLKERFAPYPVNVGLLNRFRSAEERRDIQKRLATGELDVVVGTQQLLG 737 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + + L L++VDE+ RFGV Q+ K+ T VL ++ATPIPRTL ++ G ++S Sbjct: 738 KGVMFRDLGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSLSGIREMSL 797 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 IT P R+ IKT + PIN + + ++ L G + +++ P+++ E+ +N R V+ Sbjct: 798 ITTPPPTRRAIKTHLSPINS-ESIRSAIRQELDRGGQVFYVVPRVDGIEETTANLREVIP 856 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + AI HG+M + + ES M +F NG +L+ TT+IE G+D+ + I+I Sbjct: 857 ---------GARFAIAHGQMDESELESTMLTFSNGDADILVCTTIIESGLDIPRVNTILI 907 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLK---NTEDGFL 619 E+A FGLAQL+QLRGRVGR I + L++P LS + RL ++ G+ Sbjct: 908 EDAHRFGLAQLYQLRGRVGRA-GIQAHAWLFYPKQRQLSDAARQRLRAIQEFTQLGSGYQ 966 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A D++ R G +LG +QSG Sbjct: 967 LAMRDMEIRGVGNLLGAEQSG 987 >gi|329577423|gb|EGG58873.1| TRCF domain protein [Enterococcus faecalis TX1467] Length = 637 Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 155/463 (33%), Positives = 250/463 (53%), Gaps = 29/463 (6%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + LL ++ +K P + ++ P+S T Q Sbjct: 28 EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPD--DAYQKEFEEAFPYSETDDQL 85 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM + M R+L GDVG GKT VAL A AV Q + P ILAQQHY Sbjct: 86 RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 145 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I++ + + + +++ + + + +E+I HGQ I+IGTH L I + L L+ Sbjct: 146 ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 205 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 206 IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 265 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E IER ++ + +++ +++ E+K +++V Sbjct: 266 QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 313 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA HG+M+++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 314 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 373 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 374 TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 433 Query: 630 EGEILGIKQSGMPKFLIAQP-ELHDSLLE--IARKDAKHILTQ 669 G +LG +Q G F+ + +++ +L +ARK K+I Q Sbjct: 434 AGNLLGAQQHG---FIDSVGFDMYSQMLSEAVARKQGKNIQDQ 473 >gi|170720851|ref|YP_001748539.1| transcription-repair coupling factor [Pseudomonas putida W619] gi|169758854|gb|ACA72170.1| transcription-repair coupling factor [Pseudomonas putida W619] Length = 1149 Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 144/380 (37%), Positives = 211/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q++AI+ + DM M R++ GDVG GKT VA+ A AV +G Q ++ Sbjct: 598 GFPFEETPDQQNAIEAVRADMLAAKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVL 657 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A +A G+ I+IGTH L Q Sbjct: 658 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVASAAADLAEGKIDILIGTHKLLQ 717 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D +++ L LV++DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 718 DDVRFKDLGLVVIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSI 777 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R ++T ++ N V E L L G + Y++ ++ EK ++ +V Sbjct: 778 IATPPARRLSVRTFVMEQNN-STVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 836 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + I I HG+M + + E VM F + +LIA+T+IE GIDV A+ I+I Sbjct: 837 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIVI 887 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL +S ++ RL + NT+D GF++ Sbjct: 888 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPARQKVSADAEKRLEAIANTQDLGAGFVL 947 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 948 ATNDLEIRGAGELLGEGQSG 967 >gi|91793030|ref|YP_562681.1| transcription-repair coupling factor [Shewanella denitrificans OS217] gi|91715032|gb|ABE54958.1| transcription-repair coupling factor [Shewanella denitrificans OS217] Length = 1179 Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 145/415 (34%), Positives = 228/415 (54%), Gaps = 21/415 (5%) Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 +A ++ + R+Q + G + ++ + + P+ T QESAI +L DM Sbjct: 593 VAAELLDVYARRQSRP--GEALAIDADEYAQFAQGFPYEETVDQESAIIAVLNDMQAPTS 650 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R++ GDVG GKT VA+ A AV AG Q V++ P +LAQQHYE K + + +E Sbjct: 651 MDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVVLVPTTLLAQQHYENFKDRFADWPVEIE 710 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 +++ + + L+ ++ G+ I+IGTH L Q ++ L L+I+DE+HRFGV+Q+ K Sbjct: 711 VMSRFRSAKEQEQVLQSLSEGKVDIVIGTHKLLQSEAKFVDLGLLIIDEEHRFGVRQKEK 770 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 + +L +TATPIPRTL + G D+S I PA R +KT + ++ + E Sbjct: 771 IKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVREYHQA-TIRE 829 Query: 474 RLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531 L + G + Y++ +E EK + R ++ + + HG+M + D E Sbjct: 830 ALLREILRGGQVYYLHNNVETIEKCAQDLRDLLPE---------ARVVTGHGQMRERDLE 880 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 VM F + +L+ TT+IE GIDV A+ I+I+ A+ FGLAQLHQLRGRVGR + Sbjct: 881 KVMADFYHQRFNVLVCTTIIETGIDVPSANTIVIDRADKFGLAQLHQLRGRVGRSHHQAY 940 Query: 592 CILLYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 ++ PP +S ++ RL + E+ GF++A +DL+ R GE+LG +QSG Sbjct: 941 AYMIT-PPIKLISTDARKRLEAIDALEELGAGFMLATQDLEIRGAGELLGDEQSG 994 >gi|55820109|ref|YP_138551.1| transcription repair coupling factor [Streptococcus thermophilus LMG 18311] gi|55736094|gb|AAV59736.1| transcription repair coupling factor [Streptococcus thermophilus LMG 18311] Length = 1168 Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 144/379 (37%), Positives = 217/379 (57%), Gaps = 19/379 (5%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 ++ T Q +IK+I DM M R+L GDVG GKT VA+ A AV G Q I+ P Sbjct: 612 YAETVDQLRSIKEIKADMESDKPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPT 671 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA QHY K+ +N + V+ ++ + + + ++ +A G+ IIIGTH L + Sbjct: 672 TVLAHQHYMNFKERFENHAVEVDELSRFRSKKEQNETIKNLAKGRIDIIIGTHRLLSKDV 731 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L L+++DE+ RFGV+ + KL + VL +TATPIPRTL ++ LG D+S I Sbjct: 732 KFSDLGLLVIDEEQRFGVKHKEKLKELKAKVDVLTLTATPIPRTLHMSMLGIRDLSIIET 791 Query: 451 KPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R P++T ++ N I E I R + G + ++I ++E ++ ++ + Sbjct: 792 APTNRYPVQTYVMETNPGLIREAILR---EMDRGGQIFYIYNRVE--------TIDQKVS 840 Query: 509 SLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 LHE + I +HG+MS++ E+ + F NG +L+ATT+IE GID+ + + ++IEN Sbjct: 841 ELHELVPEARIGFVHGQMSEVMLENTLLYFLNGDYDILVATTIIETGIDIPNVNTLLIEN 900 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622 A+H GL+ L+QLRGRVGR I+ L+YHP L++ S RL +K TE GF IA Sbjct: 901 ADHMGLSTLYQLRGRVGRSNRIAYAYLMYHPDKVLTEVSEKRLDAIKGFTELGSGFKIAM 960 Query: 623 EDLKQRKEGEILGIKQSGM 641 DL R G ILG QSG Sbjct: 961 RDLSIRGAGNILGASQSGF 979 >gi|330954492|gb|EGH54752.1| transcription-repair coupling factor [Pseudomonas syringae Cit 7] Length = 912 Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 145/380 (38%), Positives = 210/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q++ I + DM M R++ GDVG GKT VA+ A AV G Q I+ Sbjct: 361 GFPFEETPDQQTTIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 420 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A+ +A G+ I+IGTH L Q Sbjct: 421 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQ 480 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D ++ L LVI+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 481 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 540 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R ++T ++ N+ + E L L G + Y++ ++ EK ++ +V Sbjct: 541 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 599 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + I I HG+M + + E VM F + +LIA+T+IE GIDV A+ III Sbjct: 600 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 650 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL P ++ ++ RL + NT+D GF++ Sbjct: 651 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVL 710 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 711 ATNDLEIRGAGELLGDGQSG 730 >gi|262043184|ref|ZP_06016320.1| transcription-repair coupling factor [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039462|gb|EEW40597.1| transcription-repair coupling factor [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 1148 Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 151/409 (36%), Positives = 220/409 (53%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + + Q PF T Q AI +L DM Q M R++ Sbjct: 568 LLDIYAQRAAKAGFAFKHDREQYQLFCDGFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 627 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AVE Q ++ P +LAQQHY+ + N + +E+ + Sbjct: 628 GDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMFSRFR 687 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + LE+ A G+ I+IGTH L Q ++ L L+IVDE+HRFGV+ + ++ Sbjct: 688 SAKEQAQILEQAAEGKIDILIGTHKLLQSEVKLRDLGLLIVDEEHRFGVRHKERIKAMRA 747 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I PA R +KT + D ++ R + +L Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDALVVR-EAIL 803 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ +E N + ++ L + IAI HG+M + + E VM+ Sbjct: 804 RETLRGGQVYYLFNDVE-----NIQKAADKLAELVPE--ARIAIGHGQMRERELERVMND 856 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ TT+IE GID+ A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 916 Query: 597 -HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 HP ++ ++ RL + + ED GF +A DL+ R GE+LG QSG Sbjct: 917 PHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 965 >gi|281357501|ref|ZP_06243989.1| transcription-repair coupling factor [Victivallis vadensis ATCC BAA-548] gi|281316104|gb|EFB00130.1| transcription-repair coupling factor [Victivallis vadensis ATCC BAA-548] Length = 1098 Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 144/413 (34%), Positives = 225/413 (54%), Gaps = 20/413 (4%) Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 A + L MR+ + P E K LR PF T Q + +I +DM M Sbjct: 527 ADMLRLQAMRQSAPGIVYPPDTAETK---AFLRAFPFRDTPDQSRSTAEIRRDMESPRPM 583 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R+L GDVG GKT +A+ A AV AG Q I+AP +LAQQHY ++ +++ Sbjct: 584 DRLLCGDVGYGKTEIAMRAAFKAVSAGYQVAILAPTTVLAQQHYYSFRERFAAYPYTIDV 643 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 ++ A + ++++ G I+IGTH L +++ L LV++DE+ RFGV+ + +L Sbjct: 644 LSRFRTAAEQNAIMQKVRSGGIDILIGTHRLCNPDLKFRNLGLVVIDEEQRFGVKHKERL 703 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 + VL M+ATPIPRTL L G D+S + P R P+KTVI P + + +V + Sbjct: 704 RRFRAEVDVLTMSATPIPRTLYLAMAGARDLSTLMTAPKQRLPVKTVIAPEDEM-QVAQA 762 Query: 475 LKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532 ++ L+ G + Y++ ++ E+K R++V + A+ HG+M++ + E+ Sbjct: 763 IRAELARGGQVYYLYNRVRTIEEKADKLRALVPE---------AKFAVAHGQMNEHELEA 813 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 +M SF G L+ +T+IE G+DV +A+ IIIE A+ FGLA+L+QLRGRVGR + Sbjct: 814 IMTSFLEGKIDCLVCSTIIESGLDVPNANTIIIERADRFGLAELYQLRGRVGRWTHQAYA 873 Query: 593 ILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSG 640 +L +S ++ RLS ++ N GF +A DL+ R G +LG +QSG Sbjct: 874 YMLLPKSQLVSTDARKRLSAIRRCSNLGAGFQLALHDLEIRGSGNLLGSEQSG 926 >gi|218290671|ref|ZP_03494762.1| transcription-repair coupling factor [Alicyclobacillus acidocaldarius LAA1] gi|218239336|gb|EED06534.1| transcription-repair coupling factor [Alicyclobacillus acidocaldarius LAA1] Length = 1183 Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 142/378 (37%), Positives = 213/378 (56%), Gaps = 17/378 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q AI +I +DM + M R+L GDVG GKT VA+ A AV G Q ++ P Sbjct: 624 PYEETPDQLRAIAEIKRDMEKPRPMDRLLCGDVGYGKTEVAMRAAFKAVMDGKQVAVLVP 683 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHYE K+ + +E+++ + ++ L+ + G I+IGTH L Q+S Sbjct: 684 TTVLAQQHYETFKERFAGFPVKIEMLSRFRTRKETQEVLKGLKEGTIDIVIGTHRLLQNS 743 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +Q+ L L+IVDE+ RFGV + KL Q L +TATPIPRTL ++ LG D+S I Sbjct: 744 VQFKDLGLLIVDEEQRFGVTHKEKLKQLRANVDCLTLTATPIPRTLHMSMLGVRDLSIIE 803 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R P++T ++ N + E IER L+ G + Y++ ++ + ER Sbjct: 804 TPPENRFPVQTYVVEYNEGLVKEAIER---ELARGGQVYFVYNDVQ-----TIHRMAERV 855 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 SL + +++ HG+M++ + E VM F G +L+ TT+IE G+D+ + + +I+ + Sbjct: 856 QSLVP--DARVSVAHGQMAEAELERVMLDFLEGEYDVLVTTTIIETGLDIPNVNTLIVYD 913 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622 A+ FGL+QL+QLRGRVGR I+ Y P LS+ + RL+ +K TE GF IA Sbjct: 914 ADKFGLSQLYQLRGRVGRSNRIAYAYFTYQPAKVLSEVAEKRLAAIKEFTELGSGFKIAM 973 Query: 623 EDLKQRKEGEILGIKQSG 640 DL R G +LG +Q G Sbjct: 974 RDLSIRGAGNLLGAEQHG 991 >gi|167041424|gb|ABZ06176.1| putative TRCF domain protein [uncultured marine microorganism HF4000_006O13] Length = 1147 Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 150/377 (39%), Positives = 207/377 (54%), Gaps = 23/377 (6%) Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T+ Q I+D+L DM+ M R++ GDVG GKT VAL A G Q ++ P IL Sbjct: 605 TQDQAKVIEDVLDDMAASKSMDRLVCGDVGFGKTEVALRAAFTCAINGYQVALLVPTTIL 664 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 AQQH+E + I + I++ + + I G+A IIIGTHAL D + Y Sbjct: 665 AQQHFETFNERFSEWPIAINILSRLQTSKNNNQVRTDIEKGKADIIIGTHALLSDKVVYK 724 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI-DISKITEKP 452 L LVIVDE+HRFGV+ + KL L +TATPIPRTL + ++G++ DIS I P Sbjct: 725 NLGLVIVDEEHRFGVRHKEKLKALRKDVDYLALTATPIPRTLNM-AIGELKDISMIATPP 783 Query: 453 AGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508 GR P+KT I ++ I E +R +S G + ++ +I+ E R ++ Sbjct: 784 EGRIPVKTYISQWDKSLIHEACQR---EISRGGQVLFVHNRIDDIENMAETIRQIMP--- 837 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 S+ I HGRM + E VM F N +L+AT++IE G+D+ +A+ III A Sbjct: 838 ------VGSLEIAHGRMKERSLERVMMKFYNNEFDVLLATSIIESGLDIPNANTIIINRA 891 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623 + FGLAQLHQLRGRVGR E S L+ P L+ RL ++ ED GF++A Sbjct: 892 DRFGLAQLHQLRGRVGRSERQSYAYLMIPPKHTLTNEGRQRLEAIEAIEDLGVGFILATH 951 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R GEILG +QSG Sbjct: 952 DLEIRGAGEILGDEQSG 968 >gi|153837338|ref|ZP_01990005.1| transcription-repair coupling factor [Vibrio parahaemolyticus AQ3810] gi|149749369|gb|EDM60142.1| transcription-repair coupling factor [Vibrio parahaemolyticus AQ3810] Length = 1153 Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 144/383 (37%), Positives = 214/383 (55%), Gaps = 23/383 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI +L DM Q M R++ GDVG GKT VA+ A A + Q ++ Sbjct: 599 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ ++ L+ +A G+ I++GTH L Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLS 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 719 SDIKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502 I PA R IKT + R + V+ + VL E G + Y++ Q+E EK + + Sbjct: 779 IATPPARRLAIKTFV--REREESVVR--EAVLREIMRGGQVYFLHNQVETIEKTAEDLQK 834 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 ++ + I + HG+M + + E +M+ F + +L+ TT+IE GIDV A+ Sbjct: 835 LIPE---------ARITVAHGQMRERELERIMNDFYHQRFNVLVCTTIIETGIDVPTANT 885 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---G 617 II++ A++ GLAQLHQLRGRVGR + LL HP ++K++ RL + + ED G Sbjct: 886 IIMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAG 945 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F +A DL+ R GE+LG +QSG Sbjct: 946 FTLATHDLEIRGAGELLGDEQSG 968 >gi|294463243|gb|ADE77157.1| unknown [Picea sitchensis] Length = 394 Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 132/373 (35%), Positives = 207/373 (55%), Gaps = 37/373 (9%) Query: 327 MAPIGILAQQHYE----FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 M P +LA QHYE +++ ++ + V +TG+ P R + + G +++GT Sbjct: 1 MVPTELLATQHYENIISMLERINKDDRPSVAFLTGSTPLKETRLIRKGLEMGDIALVVGT 60 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----------------------- 419 H LF +S+ + L ++DEQHRFGV+Q+ + + KA Sbjct: 61 HKLFSESVNFASLCFAVIDEQHRFGVEQKGRFSSKACTVMDKSGANGIKLEDGQLVANKT 120 Query: 420 --APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERL 475 APHVL+M+ATPIPRTL LT G++ +SKI E P GR P+KT+ + N + + + + Sbjct: 121 FFAPHVLVMSATPIPRTLALTLHGNMSLSKINELPPGRIPVKTLALHGNTKGLTKTYQMV 180 Query: 476 KVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533 + L G + + + P I+E ++ + + + F ++HGRM +KE Sbjct: 181 QKELDSGGRVFLVYPAIDESEQLPELHAAAAEIKKISKVFKGYKCGLLHGRMKTTEKEKA 240 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 + FK G ++L++T V+EVGID+ +A++++I NAE FG++QLHQ RGRVGRG S+CI Sbjct: 241 IQQFKEGKTQILLSTQVVEVGIDIPEATMMVIMNAERFGISQLHQFRGRVGRGTGKSTCI 300 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELH 652 L+ S RL +L+ + DGF +AE DL R G +LG +QSG +P+F IA+ + Sbjct: 301 LVSS---SAVGLPRLKILQQSMDGFELAEADLHLRGPGSLLGTRQSGHLPEFSIARLQTD 357 Query: 653 DSLLEIARKDAKH 665 +LE A A H Sbjct: 358 GDVLEKAHFAALH 370 >gi|258510200|ref|YP_003183634.1| transcription-repair coupling factor [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476926|gb|ACV57245.1| transcription-repair coupling factor [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 1183 Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 142/378 (37%), Positives = 213/378 (56%), Gaps = 17/378 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q AI +I +DM + M R+L GDVG GKT VA+ A AV G Q ++ P Sbjct: 624 PYEETPDQLRAIAEIKRDMEKPRPMDRLLCGDVGYGKTEVAMRAAFKAVMDGKQVAVLVP 683 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHYE K+ + +E+++ + ++ L+ + G I+IGTH L Q+S Sbjct: 684 TTVLAQQHYETFKERFAGFPVKIEMLSRFRTRKETQEVLKGLKEGTIDIVIGTHRLLQNS 743 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +Q+ L L+IVDE+ RFGV + KL Q L +TATPIPRTL ++ LG D+S I Sbjct: 744 VQFKDLGLLIVDEEQRFGVTHKEKLKQLRANVDCLTLTATPIPRTLHMSMLGVRDLSIIE 803 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R P++T ++ N + E IER L+ G + Y++ ++ + ER Sbjct: 804 TPPENRFPVQTYVVEYNEGLVKEAIER---ELARGGQVYFVYNDVQ-----TIHRMAERV 855 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 SL + +++ HG+M++ + E VM F G +L+ TT+IE G+D+ + + +I+ + Sbjct: 856 QSLVP--DARVSVAHGQMAEAELERVMLDFLEGEYDVLVTTTIIETGLDIPNVNTLIVYD 913 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622 A+ FGL+QL+QLRGRVGR I+ Y P LS+ + RL+ +K TE GF IA Sbjct: 914 ADKFGLSQLYQLRGRVGRSNRIAYAYFTYQPAKVLSEVAEKRLAAIKEFTELGSGFKIAM 973 Query: 623 EDLKQRKEGEILGIKQSG 640 DL R G +LG +Q G Sbjct: 974 RDLSIRGAGNLLGAEQHG 991 >gi|70727507|ref|YP_254423.1| transcription-repair coupling factor [Staphylococcus haemolyticus JCSC1435] gi|123748600|sp|Q4L3G0|MFD_STAHJ RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|68448233|dbj|BAE05817.1| transcription-repair coupling factor [Staphylococcus haemolyticus JCSC1435] Length = 1169 Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 153/418 (36%), Positives = 231/418 (55%), Gaps = 23/418 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM ++ M R+L GDVG GKT VA+ A AV G Q + Sbjct: 615 DFPYELTPDQAKSIDEIKGDMERERPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 674 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +E+I+ ++ E + G I++GTH L Sbjct: 675 VPTTILAQQHYETLIERMQDFPVQIELISRFRSTKEVKETKEGLKSGYVDIVVGTHKLLG 734 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I Y L L+IVDE+ RFGV+ + ++ T VL +TATPIPRTL ++ LG D+S Sbjct: 735 KDIHYKDLGLLIVDEEQRFGVRHKERIKTMKTNVDVLTLTATPIPRTLHMSMLGVRDLSV 794 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 795 IETPPENRFPVQTYVLEQNSNFIKEALER---ELSRDGQVFYLYNRVQ--------SIYE 843 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF NG +L+ TT+IE G+DV +A+ +I Sbjct: 844 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINGEFDILVTTTIIETGVDVPNANTLI 903 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFL 619 IE A+ FGL+QL+QLRGRVGR I L+ + L++ + RL +K TE GF Sbjct: 904 IEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHSANKVLTETAEERLQAIKEFTELGSGFK 963 Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQP-ELHDSLLEIARKDAKHILTQDPDLTSV 676 IA DL R G +LG +Q G F+ + +L+ +LE A + + I ++PD V Sbjct: 964 IAMRDLNIRGAGNLLGKQQHG---FIDSVGFDLYSQMLEEAVNEKRGIKEEEPDAPEV 1018 >gi|28897749|ref|NP_797354.1| transcription-repair coupling factor [Vibrio parahaemolyticus RIMD 2210633] gi|260363824|ref|ZP_05776579.1| transcription-repair coupling factor [Vibrio parahaemolyticus K5030] gi|260876916|ref|ZP_05889271.1| transcription-repair coupling factor [Vibrio parahaemolyticus AN-5034] gi|260897942|ref|ZP_05906438.1| transcription-repair coupling factor [Vibrio parahaemolyticus Peru-466] gi|260903477|ref|ZP_05911872.1| transcription-repair coupling factor [Vibrio parahaemolyticus AQ4037] gi|28805962|dbj|BAC59238.1| transcription-repair coupling factor [Vibrio parahaemolyticus RIMD 2210633] gi|308085487|gb|EFO35182.1| transcription-repair coupling factor [Vibrio parahaemolyticus Peru-466] gi|308093632|gb|EFO43327.1| transcription-repair coupling factor [Vibrio parahaemolyticus AN-5034] gi|308110343|gb|EFO47883.1| transcription-repair coupling factor [Vibrio parahaemolyticus AQ4037] gi|308113858|gb|EFO51398.1| transcription-repair coupling factor [Vibrio parahaemolyticus K5030] Length = 1153 Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 144/383 (37%), Positives = 214/383 (55%), Gaps = 23/383 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI +L DM Q M R++ GDVG GKT VA+ A A + Q ++ Sbjct: 599 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ ++ L+ +A G+ I++GTH L Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLS 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 719 SDIKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502 I PA R IKT + R + V+ + VL E G + Y++ Q+E EK + + Sbjct: 779 IATPPARRLAIKTFV--REREESVVR--EAVLREIMRGGQVYFLHNQVETIEKTAEDLQK 834 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 ++ + I + HG+M + + E +M+ F + +L+ TT+IE GIDV A+ Sbjct: 835 LIPE---------ARITVAHGQMRERELERIMNDFYHQRFNVLVCTTIIETGIDVPTANT 885 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---G 617 II++ A++ GLAQLHQLRGRVGR + LL HP ++K++ RL + + ED G Sbjct: 886 IIMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAG 945 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F +A DL+ R GE+LG +QSG Sbjct: 946 FTLATHDLEIRGAGELLGDEQSG 968 >gi|269967617|ref|ZP_06181667.1| transcription-repair coupling factor [Vibrio alginolyticus 40B] gi|269827704|gb|EEZ81988.1| transcription-repair coupling factor [Vibrio alginolyticus 40B] Length = 1153 Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 214/382 (56%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI +L DM Q M R++ GDVG GKT VA+ A A + Q ++ Sbjct: 599 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ ++ L+ +A G+ I++GTH L Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLS 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 719 SDIKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503 I PA R IKT + + +E + R V+ + G + Y++ Q+E EK + + + Sbjct: 779 IATPPARRLAIKTF---VRQKEEPVVREAVLREIMRGGQVYFLHNQVETIEKTAEDLQKL 835 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + + I + HG+M + + E +M+ F + +L+ TT+IE GIDV A+ I Sbjct: 836 IPE---------ARITVAHGQMRERELERIMNDFYHQRFNVLVCTTIIETGIDVPTANTI 886 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GF 618 I++ A++ GLAQLHQLRGRVGR + LL HP ++K++ RL + + ED GF Sbjct: 887 IMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGF 946 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG +QSG Sbjct: 947 TLATHDLEIRGAGELLGDEQSG 968 >gi|19745206|ref|NP_606342.1| transcription-repair coupling factor [Streptococcus pyogenes MGAS8232] gi|19747295|gb|AAL96841.1| putative transcription-repair coupling factor [Streptococcus pyogenes MGAS8232] Length = 1167 Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 158/441 (35%), Positives = 241/441 (54%), Gaps = 25/441 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + + ++ G + + + + + F T+ Q +IK+I DM M R+L Sbjct: 579 LLKLYAERSQQKGFSFSPDDDLQRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLV 638 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q V++ P +LAQQHYE K +N + V++++ Sbjct: 639 GDVGFGKTEVAMRAAFKAVNDHKQVVVLVPTTVLAQQHYENFKARFENYPVEVDVLSRFR 698 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + + LER+ GQ IIIGTH L + + L L+++DE+ RFGV+ + L + T Sbjct: 699 SKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKT 758 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N + E I R Sbjct: 759 KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIR--- 815 Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 + G + +++ +++ +KK + + +V +SI +HG+MS+I E+ + Sbjct: 816 EMDRGGQVFYVYNKVDTIDKKVAELQELVPE---------ASIGFVHGQMSEIQLENTLI 866 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F NG +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR I+ L+ Sbjct: 867 DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926 Query: 596 YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 Y P L++ S RL +K TE GF IA DL R G ILG QSG + E Sbjct: 927 YRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 984 Query: 651 LHDSLLE--IARKDAKHILTQ 669 ++ LLE IA K K + Q Sbjct: 985 MYSQLLEQAIASKQGKTTVRQ 1005 >gi|289624077|ref|ZP_06457031.1| transcription-repair coupling factor [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 571 Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 145/380 (38%), Positives = 211/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q++ I+ + DM M R++ GDVG GKT VA+ A AV G Q I+ Sbjct: 20 GFPFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 79 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A+ +A G+ I+IGTH L Q Sbjct: 80 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQ 139 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D ++ L LVI+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 140 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 199 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R ++T ++ N+ + E L L G + Y++ ++ EK ++ +V Sbjct: 200 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 258 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + I I HG+M + + E VM F + +LIA+T+IE GIDV A+ III Sbjct: 259 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 309 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL P ++ ++ RL + NT+D GF++ Sbjct: 310 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVL 369 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 370 ATNDLEIRGAGELLGDGQSG 389 >gi|254229022|ref|ZP_04922443.1| transcription-repair coupling factor [Vibrio sp. Ex25] gi|262394765|ref|YP_003286619.1| transcription-repair coupling factor [Vibrio sp. Ex25] gi|151938490|gb|EDN57327.1| transcription-repair coupling factor [Vibrio sp. Ex25] gi|262338359|gb|ACY52154.1| transcription-repair coupling factor [Vibrio sp. Ex25] Length = 1153 Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 214/382 (56%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI +L DM Q M R++ GDVG GKT VA+ A A + Q ++ Sbjct: 599 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ ++ L+ +A G+ I++GTH L Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLS 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 719 SDIKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503 I PA R IKT + + +E + R V+ + G + Y++ Q+E EK + + + Sbjct: 779 IATPPARRLAIKTF---VRQREESVVREAVLREIMRGGQVYFLHNQVETIEKTAEDLQKL 835 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + + I + HG+M + + E +M+ F + +L+ TT+IE GIDV A+ I Sbjct: 836 IPE---------ARITVAHGQMRERELERIMNDFYHQRFNVLVCTTIIETGIDVPTANTI 886 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GF 618 I++ A++ GLAQLHQLRGRVGR + LL HP ++K++ RL + + ED GF Sbjct: 887 IMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGF 946 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG +QSG Sbjct: 947 TLATHDLEIRGAGELLGDEQSG 968 >gi|269102431|ref|ZP_06155128.1| transcription-repair coupling factor [Photobacterium damselae subsp. damselae CIP 102761] gi|268162329|gb|EEZ40825.1| transcription-repair coupling factor [Photobacterium damselae subsp. damselae CIP 102761] Length = 1153 Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 148/412 (35%), Positives = 225/412 (54%), Gaps = 19/412 (4%) Query: 238 IALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 +A L+ K+E+ G ++ + PF T Q AI +L DM Q M Sbjct: 571 VAAELLDVYAKRELKPGFKFKLDREAYADFCTGFPFEETHDQALAINMVLSDMCQTKVMD 630 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++ GDVG GKT VA+ A AV+ Q ++ P +LAQQH+E + NT I VE++ Sbjct: 631 RLVCGDVGFGKTEVAMRAAFVAVDNNKQVTVLVPTTLLAQQHFENFRDRFANTPIRVEVL 690 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 + +++ L + G+ I+IGTH L +++Y+ L L+IVDE+HRFGV+Q+ K+ Sbjct: 691 SRFKTAKEQKQILADVEEGKIDILIGTHKLLNSTVKYHDLGLLIVDEEHRFGVRQKEKIK 750 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 +L +TATPIPRTL + G D+S I PA R IKT + D+ I R Sbjct: 751 AIRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTF---VREKDDAIVRE 807 Query: 476 KVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 ++ ++ G + Y++ +++ VE + L + I HG+M + + E + Sbjct: 808 AILREINRGGQVYFLHNEVD-----TIEKTVEDISKLVPE--ARITFAHGQMRERELERI 860 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M F + +L+ TT+IE GIDV A+ II++ A++ GLAQLHQLRGRVGR + Sbjct: 861 MSDFYHQRFNVLVCTTIIETGIDVPTANTIIMDRADNLGLAQLHQLRGRVGRSHHQAYAY 920 Query: 594 LLY-HPP-LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 LL HP ++K++ RL + + ED GF +A DL+ R GE+LG +QSG Sbjct: 921 LLTPHPKRMTKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGDEQSG 972 >gi|167468531|ref|ZP_02333235.1| transcription-repair coupling factor [Yersinia pestis FV-1] Length = 776 Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 145/386 (37%), Positives = 212/386 (54%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q ++ PF T QE AI +L DM Q M R++ GDVG GKT VA+ A AV Sbjct: 219 QLFCQSFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVTNNK 278 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQH++ + + +E+++ ++ LE+ A G+ I+IGT Sbjct: 279 QVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMLSRFRSAKEQQVILEQAAEGKIDILIGT 338 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q + ++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 339 HKLLQSDLHWHDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 398 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 399 RDLSIIATPPARRLAVKTF---VREYDSLVIR-EAILREILRGGQVYYLYNDVE-----N 449 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 V ++ L + I I HG+M + D E VM+ F + +L+ TT+IE GID+ Sbjct: 450 IEKVTQKLAELVPE--ARITIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPS 507 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616 A+ IIIE A+H GLAQLHQLRGRVGR + LL P +S ++ RL + + ED Sbjct: 508 ANTIIIERADHLGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSTDAKKRLEAIASLEDL 567 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 568 GAGFALATHDLEIRGAGELLGEDQSG 593 >gi|329767249|ref|ZP_08258776.1| transcription-repair coupling factor [Gemella haemolysans M341] gi|328836916|gb|EGF86563.1| transcription-repair coupling factor [Gemella haemolysans M341] Length = 1183 Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 147/449 (32%), Positives = 250/449 (55%), Gaps = 23/449 (5%) Query: 242 LMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L++ K+E+ G +++G + + + ++PT Q A ++I +DM ++ M R+L Sbjct: 574 LIKLYIKRELSSGYAYSLDGSMQSEFEADFAYTPTDDQVKATEEIKRDMEKQRPMDRLLC 633 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358 GDVG GKT VA+ AV Q ++ P +LA+QHY+ F+ ++ N + +E+++ Sbjct: 634 GDVGFGKTEVAMRVAFKAVTDNKQVAVLVPTTLLAEQHYDNFVSRFA-NFPVNIEVVSRF 692 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + +++ G+ II+GTH L D +Y L L+I+DE+ RFGV+ + K+ Sbjct: 693 KSAKDITEICKKLEEGKIDIIVGTHKLLNDKFKYKDLGLLIIDEEQRFGVKHKEKIKHLK 752 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 VL ++ATPIPRTL ++ +G D+S I P R+PI+T + N++ + E + Sbjct: 753 NTVDVLTLSATPIPRTLHMSLIGIRDLSVIETPPRERQPIQTFVTAQNKM-VIKEAVMNE 811 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 ++ G + +++ ++E ++ E++ L +IA HGRMS + E++M Sbjct: 812 INRGGQVFYVYNRVE--------TIDEKYLELKRLLPDINIAYAHGRMSQRELENIMSDV 863 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 + +LI+TT+IE GID+ + + +I+E+A+ FGL+QL+QLRGRVGR + L+Y Sbjct: 864 IDRKYDMLISTTIIETGIDISNVNTLIVEDADRFGLSQLYQLRGRVGRSSREAYAYLMYE 923 Query: 598 P--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652 P L++NS RLS +KN GF IA +DL R G++LG +Q G + L+ Sbjct: 924 PFKSLTENSEKRLSAIKNFTSLGSGFKIAMQDLSIRGAGDVLGGRQHGFIDSV--GYTLY 981 Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681 +LE ++ K IL +P L R Q + Sbjct: 982 SQMLEQEIQEKKGIL--EPLLEQDRTQDV 1008 >gi|220907244|ref|YP_002482555.1| transcription-repair coupling factor [Cyanothece sp. PCC 7425] gi|219863855|gb|ACL44194.1| transcription-repair coupling factor [Cyanothece sp. PCC 7425] Length = 1169 Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 138/411 (33%), Positives = 230/411 (55%), Gaps = 19/411 (4%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 + LL + Q ++ G ++ +++ + P+ PT Q AI+D+ +DM M R+ Sbjct: 586 VDLLQLYAQRSQQQGFAFPLDQPWQEELEESFPYQPTPDQVKAIQDVKRDMESDRPMDRL 645 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 + GDVG GKT VA+ A+ A+ AG Q +AP IL QQHY +K+ I + ++ Sbjct: 646 VCGDVGFGKTEVAVRAIFKAITAGKQVAFLAPTTILTQQHYHTLKERFAPYPIQIGLLNR 705 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 R+ L+R+ G+ +++GTH L + + L L+++DE+ RFGV Q+ K+ Sbjct: 706 FRSADERKNILQRLKTGELDVVVGTHQLLGKGVVFRDLGLLVIDEEQRFGVNQKEKIKTL 765 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 T VL ++ATPIPRTL + G ++S IT P R+PIKT + P + + + L+ Sbjct: 766 KTQVDVLTLSATPIPRTLYMALSGVREMSLITTPPPSRRPIKTHLAPYDP-ETIRSALRQ 824 Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 L G + +++ P++E E+ + R +V ++ IAI HG+M + + E+ M Sbjct: 825 ELDRGGQVFYVVPRVEGIEEVAAKLREMVP---------SARIAIAHGQMEEGELEATML 875 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +F NG ++L+ TT+IE G+D+ + I+IE+A+ FGL+QL+QLRGRVGR I + L Sbjct: 876 TFNNGEAEILVCTTIIESGLDIPRVNTILIEDAQKFGLSQLYQLRGRVGRA-GIQAHAWL 934 Query: 596 YHPP---LSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSG 640 ++P L++ + RL L+ G+ +A D++ R G +LG +Q G Sbjct: 935 FYPKLNMLTEAARQRLRALQEFTQLGSGYQLAMRDMEIRGVGNLLGAEQHG 985 >gi|311087188|gb|ADP67268.1| transcription-repair coupling factor [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 812 Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 148/431 (34%), Positives = 236/431 (54%), Gaps = 23/431 (5%) Query: 219 EWTSPARE--RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276 +W + + YD A Q+ + +++ K N+E + F T Sbjct: 214 DWNKEKHKISKTVYDH--AAQLLHIYAKRESKTGFAFKKNIEK--YDLFCNDCSFKTTSD 269 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q +K +L+DMS+ M R++ GDVG GKT +A+ A AV Q I+ P +LAQQ Sbjct: 270 QNEVMKFVLKDMSKPIPMDRLICGDVGFGKTEIAMRASFLAVSNKKQVAILVPTTLLAQQ 329 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 HY+ K N + + I++ Q + + +G+ +IIIGTH L +I++ L Sbjct: 330 HYKNFKIRFSNWPVNINILSRFQTQKEQDLIFKHTKNGRINIIIGTHKLLFKNIEWCSLG 389 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 L+I+DE+HRFGV + + + + +L +TATPIPRTL + G D+S I + PA R Sbjct: 390 LLIIDEEHRFGVSHKEIIKKIYSNIDILTLTATPIPRTLNMAMTGIKDLSIIAKPPAQRL 449 Query: 457 PIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 IKT I ++ R ++ +S G + Y+I +++ N ++ ER + L Sbjct: 450 AIKTF---IQEYSPILIRKTILREISRGGQVYYIYNKVQ-----NIMNIAERLSILIPE- 500 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 +SI I HG+M +ID + VM+ F N +LI TT+IE G+D+ A+ IIIEN++HFGL+ Sbjct: 501 -ASIKIGHGQMKNIDLKKVMNEFYNNKFNVLICTTIIESGVDIARANTIIIENSDHFGLS 559 Query: 575 QLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629 QLHQLRGR+GR + +LL + ++ ++ RL + + ++ GF ++ +DL+ R Sbjct: 560 QLHQLRGRIGRSNNQAYALLLVNNFNKITSDAKKRLEAISSVDNFGGGFSLSNQDLEIRG 619 Query: 630 EGEILGIKQSG 640 GEILG +QSG Sbjct: 620 VGEILGKEQSG 630 >gi|163751452|ref|ZP_02158676.1| transcription-repair coupling factor [Shewanella benthica KT99] gi|161328666|gb|EDP99815.1| transcription-repair coupling factor [Shewanella benthica KT99] Length = 1161 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 143/395 (36%), Positives = 216/395 (54%), Gaps = 15/395 (3%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G N++ + + + PF T QE+ I +L DM M R++ GDVG GKT VA+ Sbjct: 592 GTACNIDEQEYAQFANSFPFEETVDQETTINAVLTDMCSPISMDRLVCGDVGFGKTEVAM 651 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A AV G Q I+ P +LAQQH+E K + + +E+I+ ++ ++ + Sbjct: 652 RAAFVAVNDGKQVAILVPTTLLAQQHFENFKDRFADWPVKIEVISRFKTAKEQKLIMDEL 711 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 + G+ IIIGTH L + L L+++DE+HRFGV+Q+ K+ +L +TATPI Sbjct: 712 SKGKVDIIIGTHKLLHSEGDFDNLGLLVIDEEHRFGVRQKEKIKALRANVDILTLTATPI 771 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491 PRTL + G D+S I PA R +KT I + + E L + G + Y++ + Sbjct: 772 PRTLNMAMSGMRDLSIIATPPAKRLAVKTFIREYDTT-TIREALLREILRGGQVYFLHNK 830 Query: 492 IEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550 +E ++ +R N + E + + HG+M + D E VM F + +L+ TT+ Sbjct: 831 VE--------TIEKRANEIRELLPEARVVTAHGQMRERDLERVMSDFYHQKFNVLVCTTI 882 Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRL 608 IE GIDV A+ I+IE A+ FGLAQLHQLRGRVGR + ++ HP +S ++ RL Sbjct: 883 IETGIDVPSANTIVIERADKFGLAQLHQLRGRVGRSHHQAYAYMMTPHPKSISSDARKRL 942 Query: 609 SVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 + ED GFL+A +DL+ R GE+LG +QSG Sbjct: 943 EAIGALEDLGAGFLLATQDLEIRGAGELLGDEQSG 977 >gi|116626979|ref|YP_819598.1| transcription-repair coupling factor [Streptococcus thermophilus LMD-9] gi|116100256|gb|ABJ65402.1| Transcription-repair coupling factor (superfamily II helicase) [Streptococcus thermophilus LMD-9] gi|312277424|gb|ADQ62081.1| Transcription-repair coupling factor (Superfamily II helicase) [Streptococcus thermophilus ND03] Length = 1168 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 144/379 (37%), Positives = 216/379 (56%), Gaps = 19/379 (5%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T Q +IK+I DM M R+L GDVG GKT VA+ A AV G Q I+ P Sbjct: 612 YVETVDQLRSIKEIKADMESDKPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPT 671 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA QHY K+ +N + V+ ++ + + + ++ +A G+ IIIGTH L + Sbjct: 672 TVLAHQHYMNFKERFENHAVEVDELSRFRSKKEQNETIKNLAKGRIDIIIGTHRLLSKDV 731 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L L+++DE+ RFGV+ + KL + VL +TATPIPRTL ++ LG D+S I Sbjct: 732 KFSDLGLLVIDEEQRFGVKHKEKLKELKAKVDVLTLTATPIPRTLHMSMLGIRDLSIIET 791 Query: 451 KPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R P++T ++ N I E I R + G + ++I ++E ++ ++ + Sbjct: 792 APTNRYPVQTYVMETNPGLIREAILR---EMDRGGQIFYIYNRVE--------TIDQKVS 840 Query: 509 SLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 LHE + I +HG+MS++ E+ + F NG +L+ATT+IE GID+ + + ++IEN Sbjct: 841 ELHELVPEARIGFVHGQMSEVMLENTLLDFLNGDYDILVATTIIETGIDIPNVNTLLIEN 900 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622 A+H GL+ L+QLRGRVGR I+ L+YHP L++ S RL +K TE GF IA Sbjct: 901 ADHMGLSTLYQLRGRVGRSNRIAYAYLMYHPDKVLTEVSEKRLDAIKGFTELGSGFKIAM 960 Query: 623 EDLKQRKEGEILGIKQSGM 641 DL R G ILG QSG Sbjct: 961 RDLSIRGAGNILGASQSGF 979 >gi|310767325|gb|ADP12275.1| transcription-repair coupling factor [Erwinia sp. Ejp617] Length = 1148 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 149/409 (36%), Positives = 221/409 (54%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + + Q + PF T Q AI +L DM Q M R++ Sbjct: 568 LLDIYAQRAAKTGFAFKHDKQQYQLFCDSFPFETTVDQAQAINAVLSDMCQPLAMDRLVC 627 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AVE Q ++ P +LAQQHY+ + N + +E+++ Sbjct: 628 GDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMMSRFR 687 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + L G+ I+IGTH L Q+ I++ L L+IVDE+HRFGV+ + ++ Sbjct: 688 TAKEQAQVLADAQEGKVDILIGTHKLLQNDIKWRDLGLLIVDEEHRFGVRHKERIKAMRA 747 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I PA R +KT + DE+ R + +L Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDEMAVR-EAIL 803 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ +E N +R + L + +A+ HG+M + + E VM+ Sbjct: 804 REVLRGGQVYYLYNDVE-----NIEKATKRLSELVPE--ARVALGHGQMRERELERVMND 856 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ TT+IE GID+ A+ IIIE A+ FGLAQLHQLRGRVGR + LL Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADRFGLAQLHQLRGRVGRSHHQAYAWLLT 916 Query: 597 -HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 HP ++ +++ RL + + ED GF +A DL+ R GE+LG QSG Sbjct: 917 PHPKAMTTDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEGQSG 965 >gi|330889122|gb|EGH21783.1| transcription-repair coupling factor [Pseudomonas syringae pv. mori str. 301020] Length = 1150 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 145/380 (38%), Positives = 210/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q++ I+ + DM M R++ GDVG GKT VA+ A AV G Q I+ Sbjct: 599 GFPFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P LAQQHY + + + VE+++ A+ +A G+ I+IGTH L Q Sbjct: 659 VPTTPLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQ 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D ++ L LVI+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 719 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R ++T ++ N+ + E L L G + Y++ ++ EK ++ +V Sbjct: 779 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 837 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + I I HG+M + + E VM F + +LIA+T+IE GIDV A+ III Sbjct: 838 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 888 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL P ++ ++ RL + NT+D GF++ Sbjct: 889 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVL 948 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 949 ATNDLEIRGAGELLGDGQSG 968 >gi|299136367|ref|ZP_07029551.1| transcription-repair coupling factor [Acidobacterium sp. MP5ACTX8] gi|298602491|gb|EFI58645.1| transcription-repair coupling factor [Acidobacterium sp. MP5ACTX8] Length = 1301 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 162/460 (35%), Positives = 243/460 (52%), Gaps = 31/460 (6%) Query: 192 DLLQKKSFPSIAEA--FNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249 DL+QK A N + NP AK A + +A + LL + Q K Sbjct: 586 DLIQKYRSTETGPAPQLNRLGNPAWAKTKARVKKAMQDMAEE--------LLKLYAQRKA 637 Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309 +G + + + + F+ T Q AI DI DM M R+L GDVG GKT V Sbjct: 638 AVGTAFSPDTNMQHEFEDAFDFNETDDQLRAIADIKADMESTQPMDRLLCGDVGYGKTEV 697 Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369 A+ A AV+ G Q ++ P +L QH+E K+ ++VE+I+ ++ LE Sbjct: 698 AMRAAFKAVQDGKQVAVLTPTTVLCFQHFESFKRRFSKFPVVVEMISRFRTAKEKKDVLE 757 Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429 R A G+ I+IGTHA+ S+Q+ L L++VDE+ RFGV+ + +L Q A VL M+AT Sbjct: 758 RTAQGKVDILIGTHAILSQSLQFQDLGLLVVDEEQRFGVRHKERLKQMRAAIDVLSMSAT 817 Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER--LKVVLSEGKKAYW 487 PIPRTL ++ +G D+S I P R I+TV+ + DE + R ++V L G + Y+ Sbjct: 818 PIPRTLNMSLVGLRDMSVIETPPKDRMAIQTVVA---KFDEKLIRTAVEVELERGGQTYF 874 Query: 488 ICPQIEEKKE--SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545 + ++E E S R +V + + + + HG+M + + E VM +F +G +L Sbjct: 875 VHNRVETIYELASMIRELVPQ---------ARVVVGHGQMPEAELERVMLAFMDGEYDVL 925 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKN 603 AT++IE G+D+ A+ III A+ GL++L+QLRGRVGR + LL P L++ Sbjct: 926 CATSIIENGLDISKANTIIINRADRHGLSELYQLRGRVGRSNRRAYAYLLIPPEQQLTEI 985 Query: 604 SYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 + RL+ LK D GF IA DL+ R G +LG +QSG Sbjct: 986 ARRRLAALKEFSDLGAGFKIAALDLELRGAGNMLGGEQSG 1025 >gi|310829353|ref|YP_003961710.1| transcription-repair coupling factor [Eubacterium limosum KIST612] gi|308741087|gb|ADO38747.1| transcription-repair coupling factor [Eubacterium limosum KIST612] Length = 1140 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 166/476 (34%), Positives = 254/476 (53%), Gaps = 33/476 (6%) Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266 N + NP K A E +A DEL IAL R+ K G + + ++ Sbjct: 540 NQMGNPDWQKAKNKAQKAVEDMA-DEL----IALYAKRRSMK---GYAFSPDTSWQKEFE 591 Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 + P+ T+ Q +++I DM + M R+L GDVG GKT VAL A AV G Q + Sbjct: 592 DDFPYIETEDQLRCVEEIKADMESEIPMDRLLCGDVGYGKTEVALRAAFKAVMEGKQVAM 651 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 + P ILAQQHY + + + I VE+I+ ++K L +A G+ +IIGTH L Sbjct: 652 LVPTTILAQQHYNTVLERFRKYPISVEVISRFRTSGQQKKILGDLALGKLDMIIGTHRLL 711 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 +Q+ L L+I+DE+ RFGV+ + K+ Q VL ++ATPIPRTL ++ G D+S Sbjct: 712 SQDVQFKDLGLLIIDEEQRFGVRSKEKIKQLKQNVDVLTLSATPIPRTLHMSMTGVRDMS 771 Query: 447 KITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKES--NFRS 502 I E P GR+P++T ++ N I + I R L G + Y++ ++ + E + +S Sbjct: 772 VIEEPPEGRRPVQTYVMAYNPLIIQDAINR---ELGRGGQVYYVHNRVHDIHEVAIDVQS 828 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 +V + I + HGRMS + E +M F N +L+ TT++E G+DV +A+ Sbjct: 829 LVP---------DARIVVAHGRMSGSELEDIMVDFLNHDFDILVTTTIVESGLDVKNANT 879 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LSKNSYTRLSVLKNTE---DGF 618 +II+ +HFGL+QL+QLRGRVGR + + + + L++ + RL +K+ GF Sbjct: 880 MIIDEGDHFGLSQLYQLRGRVGRSDAQAYAYVTHKKEILTEVAQKRLKAIKDFTAFGSGF 939 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA---RKDAKHILTQDP 671 +A DL+ R G ILG +QSG F I EL+ +LE A R D + T++P Sbjct: 940 KVAMRDLEIRGAGNILGAEQSGHL-FKIGY-ELYCRILEEAISKRMDGVEVETEEP 993 >gi|219682214|ref|YP_002468598.1| transcription-repair coupling factor [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621947|gb|ACL30103.1| transcription-repair coupling factor [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] Length = 812 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 148/431 (34%), Positives = 236/431 (54%), Gaps = 23/431 (5%) Query: 219 EWTSPARE--RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276 +W + + YD A Q+ + +++ K N+E + F T Sbjct: 214 DWNKEKHKISKTVYDH--AAQLLHIYAKRESKTGFAFKKNIEK--YDLFCNDCSFKTTSD 269 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q +K +L+DMS+ M R++ GDVG GKT +A+ A AV Q I+ P +LAQQ Sbjct: 270 QNEVMKFVLKDMSKPIPMDRLICGDVGFGKTEIAMRASFLAVSNKKQVAILVPTTLLAQQ 329 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 HY+ K N + + I++ Q + + +G+ +IIIGTH L +I++ L Sbjct: 330 HYKNFKIRFSNWPVNINILSRFQTQKEQDLIFKHTKNGRINIIIGTHKLLFKNIEWCSLG 389 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 L+I+DE+HRFGV + + + + +L +TATPIPRTL + G D+S I + PA R Sbjct: 390 LLIIDEEHRFGVSHKEIIKKIYSNIDILTLTATPIPRTLNMAMTGIKDLSIIAKPPAQRL 449 Query: 457 PIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 IKT I ++ R ++ +S G + Y+I +++ N ++ ER + L Sbjct: 450 AIKTF---IQEYSPILIRKTILREISRGGQVYYIYNKVQ-----NIMNIAERLSILIPE- 500 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 +SI I HG+M +ID + VM+ F N +LI TT+IE G+D+ A+ IIIEN++HFGL+ Sbjct: 501 -ASIKIGHGQMKNIDLKKVMNEFYNNKFNVLICTTIIESGVDIARANTIIIENSDHFGLS 559 Query: 575 QLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629 QLHQLRGR+GR + +LL + ++ ++ RL + + ++ GF ++ +DL+ R Sbjct: 560 QLHQLRGRIGRSNNQAYALLLVNNFNKITSDAKKRLEAISSVDNFGGGFSLSNQDLEIRG 619 Query: 630 EGEILGIKQSG 640 GEILG +QSG Sbjct: 620 VGEILGKEQSG 630 >gi|15616905|ref|NP_240118.1| transcription-repair coupling factor [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|14194918|sp|P57381|MFD_BUCAI RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|25403587|pir||D84964 transcription-repair coupling factor [imported] - Buchnera sp. (strain APS) gi|10038969|dbj|BAB13004.1| transcription-repair coupling factor [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 812 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 148/431 (34%), Positives = 236/431 (54%), Gaps = 23/431 (5%) Query: 219 EWTSPARE--RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276 +W + + YD A Q+ + +++ K N+E + F T Sbjct: 214 DWNKEKHKISKTVYDH--AAQLLHIYAKRESKTGFAFKKNIEK--YDLFCNDCSFKTTSD 269 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q +K +L+DMS+ M R++ GDVG GKT +A+ A AV Q I+ P +LAQQ Sbjct: 270 QNEVMKFVLKDMSKPIPMDRLICGDVGFGKTEIAMRASFLAVSNKKQVAILVPTTLLAQQ 329 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 HY+ K N + + I++ Q + + +G+ +IIIGTH L +I++ L Sbjct: 330 HYKNFKIRFSNWPVNINILSRFQTQKEQDLIFKHTKNGRINIIIGTHKLLFKNIEWCSLG 389 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 L+I+DE+HRFGV + + + + +L +TATPIPRTL + G D+S I + PA R Sbjct: 390 LLIIDEEHRFGVSHKEIIKKIYSNIDILTLTATPIPRTLNMAMTGIKDLSIIAKPPAQRL 449 Query: 457 PIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 IKT I ++ R ++ +S G + Y+I +++ N ++ ER + L Sbjct: 450 AIKTF---IQEYSPILIRKTILREISRGGQVYYIYNKVQ-----NIMNIAERLSILIPE- 500 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 +SI I HG+M +ID + VM+ F N +LI TT+IE G+D+ A+ IIIEN++HFGL+ Sbjct: 501 -ASIKIGHGQMKNIDLKKVMNEFYNNKFNVLICTTIIESGVDIARANTIIIENSDHFGLS 559 Query: 575 QLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629 QLHQLRGR+GR + +LL + ++ ++ RL + + ++ GF ++ +DL+ R Sbjct: 560 QLHQLRGRIGRSNNQAYALLLVNNFNKITSDAKKRLEAISSVDNFGGGFSLSNQDLEIRG 619 Query: 630 EGEILGIKQSG 640 GEILG +QSG Sbjct: 620 VGEILGKEQSG 630 >gi|238894149|ref|YP_002918883.1| transcription-repair coupling factor [Klebsiella pneumoniae NTUH-K2044] gi|238546465|dbj|BAH62816.1| transcription-repair ATP-dependent coupling factor [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 1148 Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 150/409 (36%), Positives = 221/409 (54%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + + Q PF T Q AI +L DM Q M R++ Sbjct: 568 LLDIYAQRAAKAGFAFKHDREQYQLFCDGFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 627 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AVE Q ++ P +LAQQHY+ + N + +E+++ Sbjct: 628 GDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFR 687 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + L++ A G+ I+IGTH L Q ++ L L+IVDE+HRFGV+ + ++ Sbjct: 688 SAKEQAQILKQAAEGKIDILIGTHKLLQSEVKLRDLGLLIVDEEHRFGVRHKERIKAMRA 747 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I PA R +KT + D ++ R + +L Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDALVVR-EAIL 803 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ +E N + ++ L + IAI HG+M + + E VM+ Sbjct: 804 RETLRGGQVYYLFNDVE-----NIQKAADKLAELVPE--ARIAIGHGQMRERELERVMND 856 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ TT+IE GID+ A+ IIIE A+HFGLAQLHQLRGRVGR + LL Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 916 Query: 597 -HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 HP ++ ++ RL + + ED GF +A DL+ R GE+LG QSG Sbjct: 917 PHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 965 >gi|312865767|ref|ZP_07725989.1| transcription-repair coupling factor [Streptococcus downei F0415] gi|311098642|gb|EFQ56864.1| transcription-repair coupling factor [Streptococcus downei F0415] Length = 1169 Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 155/444 (34%), Positives = 235/444 (52%), Gaps = 29/444 (6%) Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266 N +++ R K + S E +A D+LL L R Q K G + + ++ Sbjct: 557 NKLNDGRFQKAKQKVSKQVEDIA-DDLLK----LYAERSQLK---GFAFSADDDDQREFE 608 Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 + + T Q +IK++ DM M R+L GDVG GKT VA+ AV Q + Sbjct: 609 EDFAYVETDDQLRSIKEVKADMESDKPMDRLLVGDVGFGKTEVAMRGAFKAVNDNKQVAV 668 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 + P +LAQQHY K+ +N + V I++ + + L ++ GQ IIIGTH L Sbjct: 669 LVPTTVLAQQHYNNFKERFENYAVQVGILSRFQTKKEQTDTLAALSKGQIDIIIGTHRLL 728 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 +++ L L+++DE+ RFGV+ + KL + VL +TATPIPRTL ++ LG D+S Sbjct: 729 SKDVEFLDLGLIVIDEEQRFGVKHKEKLKELKKKSDVLTLTATPIPRTLHMSMLGIRDLS 788 Query: 447 KITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRS 502 I P R P++T ++ N I E I R + G +A+++ ++E ++K + Sbjct: 789 VIETPPTNRYPVQTYVLETNPGMIREAIIR---EIDRGGQAFYVYNRVETIDRKAMELQE 845 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 +V N I ++HG+MS+I E+ + F +G +L+ATT+IE GID+ + + Sbjct: 846 LVPEAN---------IGVVHGQMSEIQLENTLFDFLDGVYDVLVATTIIETGIDMPNVNT 896 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DG 617 + +ENA+ GL+ L+QLRGRVGR I+ L+Y P LS+ S RL +K TE G Sbjct: 897 LFVENADQMGLSTLYQLRGRVGRSNRIAYAYLMYQPDKVLSEASEKRLDAIKGFTELGSG 956 Query: 618 FLIAEEDLKQRKEGEILGIKQSGM 641 F IA DL R G ILG QSG Sbjct: 957 FKIAMRDLSIRGAGNILGASQSGF 980 >gi|256003231|ref|ZP_05428223.1| transcription-repair coupling factor [Clostridium thermocellum DSM 2360] gi|255992922|gb|EEU03012.1| transcription-repair coupling factor [Clostridium thermocellum DSM 2360] gi|316939280|gb|ADU73314.1| transcription-repair coupling factor [Clostridium thermocellum DSM 1313] Length = 1178 Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 138/378 (36%), Positives = 221/378 (58%), Gaps = 17/378 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q I++I +DM M R+L GDVG GKT VA+ A+ AV G Q + P Sbjct: 629 PYQETEDQLRCIEEIKRDMESPRPMDRLLCGDVGYGKTEVAMRAVFKAVMDGKQVAYLVP 688 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY K+ ++ I VE+++ QA +++ L+ + G ++IGTH L Q Sbjct: 689 TTVLAQQHYNTFKERMKDFPITVEVLSRFRTQAEQKRILKDVKAGMVDVLIGTHRLLQKD 748 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+++DE+ RFGV + K+ Q T VL +TATPIPRTL ++ +G DIS I Sbjct: 749 VCFKDLGLLVIDEEQRFGVTHKEKIKQMKTNIDVLTLTATPIPRTLHMSLVGIRDISTIE 808 Query: 450 EKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 E P R P++T ++ N DEV+ + + +S G + +++ ++ R++ ++ Sbjct: 809 EPPEERYPVQTYVMEYN--DEVVRDAINREMSRGGQVFYLYNRV--------RAINQKAA 858 Query: 509 SLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + + + +AI HG+M++ + E++M F NG +L+ TT+IE G+D+ + + II+E+ Sbjct: 859 EIQKLVPEARVAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVNTIIVED 918 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622 A+ GLAQL+QLRGRVGR ++ + Y LS+ + RL +K TE GF IA Sbjct: 919 ADKMGLAQLYQLRGRVGRSNRLAYAYITYKKDKVLSEIAEKRLQAIKEFTEFGSGFKIAM 978 Query: 623 EDLKQRKEGEILGIKQSG 640 DL+ R G +LG +Q G Sbjct: 979 RDLQLRGAGNLLGPQQHG 996 >gi|219681659|ref|YP_002468045.1| transcription-repair coupling factor [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471348|ref|ZP_05635347.1| transcription-repair coupling factor [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624502|gb|ACL30657.1| transcription-repair coupling factor [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 812 Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 148/431 (34%), Positives = 236/431 (54%), Gaps = 23/431 (5%) Query: 219 EWTSPARE--RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276 +W + + YD A Q+ + +++ K N+E + F T Sbjct: 214 DWNKEKHKISKTVYDH--AAQLLHIYAKRESKTGFSFKKNIEK--YDLFCNDCSFKTTSD 269 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q +K +L+DMS+ M R++ GDVG GKT +A+ A AV Q I+ P +LAQQ Sbjct: 270 QNEVMKFVLKDMSKPIPMDRLICGDVGFGKTEIAMRASFLAVSNKKQVAILVPTTLLAQQ 329 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 HY+ K N + + I++ Q + + +G+ +IIIGTH L +I++ L Sbjct: 330 HYKNFKIRFSNWPVNINILSRFQTQKEQDLIFKHTKNGRINIIIGTHKLLFKNIEWCSLG 389 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 L+I+DE+HRFGV + + + + +L +TATPIPRTL + G D+S I + PA R Sbjct: 390 LLIIDEEHRFGVSHKEIIKKIYSNIDILTLTATPIPRTLNMAMTGIKDLSIIAKPPAQRL 449 Query: 457 PIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 IKT I ++ R ++ +S G + Y+I +++ N ++ ER + L Sbjct: 450 AIKTF---IQEYSPILIRKTILREISRGGQVYYIYNKVQ-----NIMNIAERLSILIPE- 500 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 +SI I HG+M +ID + VM+ F N +LI TT+IE G+D+ A+ IIIEN++HFGL+ Sbjct: 501 -ASIKIGHGQMKNIDLKKVMNEFYNNKFNVLICTTIIESGVDIARANTIIIENSDHFGLS 559 Query: 575 QLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629 QLHQLRGR+GR + +LL + ++ ++ RL + + ++ GF ++ +DL+ R Sbjct: 560 QLHQLRGRIGRSNNQAYALLLVNNFNKITSDAKKRLEAISSVDNFGGGFSLSNQDLEIRG 619 Query: 630 EGEILGIKQSG 640 GEILG +QSG Sbjct: 620 VGEILGKEQSG 630 >gi|160878272|ref|YP_001557240.1| transcription-repair coupling factor [Clostridium phytofermentans ISDg] gi|160426938|gb|ABX40501.1| transcription-repair coupling factor [Clostridium phytofermentans ISDg] Length = 1179 Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 143/377 (37%), Positives = 211/377 (55%), Gaps = 15/377 (3%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q AI D +DM K M R++ GDVG GKT +A+ A A+ G Q V + P Sbjct: 624 PYEETDDQLRAIDDTKRDMESKKIMDRLICGDVGYGKTEIAIRAAFKAISDGKQVVFLVP 683 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHY + N I V+++ A ++K LE + GQ I+IGTH + Sbjct: 684 TTILAQQHYNTFSQRMMNFPISVDMLCRFKTPAQQKKTLENLKKGQLDILIGTHRVLSKD 743 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 IQ+ L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ +G D+S + Sbjct: 744 IQFKNLGLLIIDEEQRFGVTHKEKIKQMKGDIDVLTLTATPIPRTLHMSLVGIRDMSVLE 803 Query: 450 EKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 E P R PI+T ++ N DE+I E + L+ G + Y++ ++ E + + R Sbjct: 804 EPPVDRLPIQTFVLEHN--DEIIREAINRELARGGQVYYVHNRVNGLDE--ITNTIARLV 859 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 +++A HG+M + E +M F NG +L++TT+IE G+D+ + + +II+NA Sbjct: 860 P-----DANVAFAHGQMHEHQLEKIMFEFINGEIDVLVSTTIIETGLDISNVNTMIIDNA 914 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623 + GL+QL+QLRGRVGR S L+Y L + + RL +K TE GF IA Sbjct: 915 DQLGLSQLYQLRGRVGRSNRTSFAFLMYKRDKLLKEVAEKRLQAIKEFTELGSGFKIAMR 974 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R G +LG +QSG Sbjct: 975 DLEIRGAGNLLGAQQSG 991 >gi|282858160|ref|ZP_06267355.1| transcription-repair-coupling factor [Pyramidobacter piscolens W5455] gi|282584082|gb|EFB89455.1| transcription-repair-coupling factor [Pyramidobacter piscolens W5455] Length = 990 Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 142/409 (34%), Positives = 224/409 (54%), Gaps = 16/409 (3%) Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 LL + Q + G +G + ++ + P+ T Q AI+D+ DM ++ M R++ Sbjct: 434 GLLNLYAQRELADGRAFGRDGDLLKRFEESFPYKETVDQLRAIRDVKHDMERRWPMDRLI 493 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 GDVG GKT V L A VE G QA I+AP +LA QHY I VE+++ Sbjct: 494 VGDVGYGKTEVVLRAAVKTVENGAQAAIIAPTTVLALQHYRTCVARVGELPIRVELLSRM 553 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 +P+ +++ L+ A+G+ I+IGTH LFQD I++ L L+I+DE+HRFGV+ + +L Sbjct: 554 IPKKKQKEILDETANGRVDILIGTHRLFQDDIRFKDLGLLIIDEEHRFGVKHKERLKVAH 613 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 VL ++ATPIPR+L + G DIS I P GR + TV +R D + V+ Sbjct: 614 PGLDVLSLSATPIPRSLSMAMRGIRDISVIATSPRGRGEVFTV---TSRWDPSLAHDAVL 670 Query: 479 --LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 L G + Y++ +I++ ++ R + RF H T A+ HG+M + + E M+ Sbjct: 671 RELMRGGQVYYLHNRIDDIEQIAAR-LANRFPG---HRT---AVAHGQMGERELEKTMNE 723 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F +G ++L+ TT+IE G+DV A+ +I+++ GLAQ+HQ+RGR+GR E + + Y Sbjct: 724 FYDGKIEILVCTTIIESGLDVPRANTLIVDDVRRLGLAQMHQIRGRIGRRSENAYALFFY 783 Query: 597 HPPLS----KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641 S + L + + G+ +A+ DL+ R GEILG +Q G Sbjct: 784 ESEESGGQTRERLEALGAVGSQNGGYQLAQRDLEIRGAGEILGTEQHGF 832 >gi|326405611|gb|ADZ62682.1| transcription-repair coupling factor [Lactococcus lactis subsp. lactis CV56] Length = 1161 Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 147/445 (33%), Positives = 241/445 (54%), Gaps = 31/445 (6%) Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266 N +++ R K + S E ++ D+L+ L +Q KK G + + ++ Sbjct: 551 NKLNDGRWRKTMSYVSKQVEDIS-DDLIK-----LYAERQAKK--GFAFSPDDTSQEEFD 602 Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 + T+ Q +I +I DM + M R+L GDVG GKT VA+ A A+ G Q + Sbjct: 603 SGFSYVETEDQMRSINEIKHDMELERPMDRLLVGDVGFGKTEVAMRAAFKAINDGKQVAV 662 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 + P +LA+QH+ + N + VE+++ + + + L ++ G+ +IIGTH L Sbjct: 663 LVPTTVLAEQHFNNFTERFINFGVNVEVLSRFQTKTQQTEILAKLKKGRVDLIIGTHRLL 722 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 ++++ L L+I+DE+ RFGV+ + +L + T VL +TATPIPRTL ++ LG D+S Sbjct: 723 SKDVEFFDLGLMIIDEEQRFGVKHKERLKELKTQVDVLTLTATPIPRTLHMSMLGIRDLS 782 Query: 447 KITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFR 501 I P R P++T ++ N D V+ +S G + Y++ +++ E+K S Sbjct: 783 VIETPPTNRYPVQTYVMETNYGVVRDAVLRE----ISRGGQVYYVYNRVDTIEQKVSQLE 838 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ + I IHG+M+++ E+ + +F G +L+ATT+IE G+D+ +A+ Sbjct: 839 ELIPE---------ARIGFIHGQMTEVQLENTLLAFIAGDYDVLVATTIIETGVDIPNAN 889 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--D 616 + IENA+ GL+QL+QLRGRVGR ++ L+Y P LS+ S RL +K TE Sbjct: 890 TLFIENADMMGLSQLYQLRGRVGRSNRVAYAYLMYRPEKILSEVSEKRLEAIKGFTELGS 949 Query: 617 GFLIAEEDLKQRKEGEILGIKQSGM 641 GF IA DL R G +LG +QSG Sbjct: 950 GFKIAMRDLSIRGAGNLLGSEQSGF 974 >gi|281418467|ref|ZP_06249486.1| transcription-repair coupling factor [Clostridium thermocellum JW20] gi|281407551|gb|EFB37810.1| transcription-repair coupling factor [Clostridium thermocellum JW20] Length = 1178 Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 138/378 (36%), Positives = 221/378 (58%), Gaps = 17/378 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q I++I +DM M R+L GDVG GKT VA+ A+ AV G Q + P Sbjct: 629 PYQETEDQLRCIEEIKRDMESPRPMDRLLCGDVGYGKTEVAMRAVFKAVMDGKQVAYLVP 688 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY K+ ++ I VE+++ QA +++ L+ + G ++IGTH L Q Sbjct: 689 TTVLAQQHYNTFKERMKDFPITVEVLSRFRTQAEQKRILKDVKAGMVDVLIGTHRLLQKD 748 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+++DE+ RFGV + K+ Q T VL +TATPIPRTL ++ +G DIS I Sbjct: 749 VCFKDLGLLVIDEEQRFGVTHKEKIKQMKTNIDVLTLTATPIPRTLHMSLVGIRDISTIE 808 Query: 450 EKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 E P R P++T ++ N DEV+ + + +S G + +++ ++ R++ ++ Sbjct: 809 EPPEERYPVQTYVMEYN--DEVVRDAINREMSRGGQVFYLYNRV--------RAINQKAA 858 Query: 509 SLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + + + +AI HG+M++ + E++M F NG +L+ TT+IE G+D+ + + II+E+ Sbjct: 859 EIQKLVPEARVAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVNTIIVED 918 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622 A+ GLAQL+QLRGRVGR ++ + Y LS+ + RL +K TE GF IA Sbjct: 919 ADKMGLAQLYQLRGRVGRSNRLAYAYITYKKDKVLSEIAEKRLQAIKEFTEFGSGFKIAM 978 Query: 623 EDLKQRKEGEILGIKQSG 640 DL+ R G +LG +Q G Sbjct: 979 RDLQLRGAGNLLGPQQHG 996 >gi|225849434|ref|YP_002729599.1| transcription-repair-coupling factor (trcf) (ATP-dependent helicase mfd) [Sulfurihydrogenibium azorense Az-Fu1] gi|225643749|gb|ACN98799.1| transcription-repair-coupling factor (trcf) (ATP-dependent helicase mfd) [Sulfurihydrogenibium azorense Az-Fu1] Length = 938 Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 139/396 (35%), Positives = 227/396 (57%), Gaps = 17/396 (4%) Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313 P++VEG++ K R+ P+ T Q AIK++ +D+S+ M R++ GDVG GKT VA+ + Sbjct: 391 PLDVEGQLITKFERDFPYVETPDQLKAIKEVKKDLSKDRPMERLICGDVGFGKTEVAIRS 450 Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373 G Q +++ P +LA QHY K+ + +IVE ++ ++ + + ++++ Sbjct: 451 AFIHAVNGYQTLVLVPTTVLAYQHYVKFKERLEKYGLIVENLSRLKTKSQQEEIIKKLEE 510 Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433 G+ +++ TH D++++ L L+I+DE+HRFGV+ + K+ Q + L +TATPIPR Sbjct: 511 GKIDVVVATHKALSDNVKFKNLGLLIIDEEHRFGVRAKEKIRQLKKSIDTLYLTATPIPR 570 Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA--YWICPQ 491 TL + G DIS I P GR +KT + P DE I + V +K +++ + Sbjct: 571 TLNMALSGLKDISVINTPPEGRYEVKTYVSP---FDENILKKAVEFELNRKGQVFYVHNR 627 Query: 492 IEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550 +E ++ ER N L F ++ + IHG+M + E + F G +L++T++ Sbjct: 628 VE--------TIEERVNYLKTLFKNAKVDFIHGQMKPSEIEKKILYFIEGKIDILVSTSI 679 Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL-S 609 IE GID+ A+ +I+E A+ FGLAQL+ LRGRVGRG + C L ++K++ RL + Sbjct: 680 IETGIDIPTANTLIVERADLFGLAQLYHLRGRVGRGNIQAYCYLFIPKEITKDARRRLDA 739 Query: 610 VLKNTE--DGFLIAEEDLKQRKEGEILGIKQSGMPK 643 +LK T G ++ EDL+ R G ILGI+QSG K Sbjct: 740 ILKLTRPGSGLKVSIEDLQIRGPGNILGIEQSGFIK 775 >gi|91225270|ref|ZP_01260438.1| transcription-repair coupling factor [Vibrio alginolyticus 12G01] gi|91189909|gb|EAS76181.1| transcription-repair coupling factor [Vibrio alginolyticus 12G01] Length = 1153 Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 214/382 (56%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI +L DM Q M R++ GDVG GKT VA+ A A + Q ++ Sbjct: 599 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFIATDNSKQVAVL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ ++ L+ +A G+ I++GTH L Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLS 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 719 SDIKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503 I PA R IKT + + +E + R V+ + G + Y++ Q+E EK + + + Sbjct: 779 IATPPARRLAIKTF---VRQKEEPVVREAVLREIMRGGQVYFLHNQVETIEKTAEDLQKL 835 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + + I + HG+M + + E +M+ F + +L+ TT+IE GIDV A+ I Sbjct: 836 IPE---------ARITVAHGQMRERELERIMNDFYHQRFNVLVCTTIIETGIDVPTANTI 886 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GF 618 I++ A++ GLAQLHQLRGRVGR + LL HP ++K++ RL + + ED GF Sbjct: 887 IMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGF 946 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG +QSG Sbjct: 947 TLATHDLEIRGAGELLGDEQSG 968 >gi|312959638|ref|ZP_07774155.1| transcription-repair coupling factor [Pseudomonas fluorescens WH6] gi|311286355|gb|EFQ64919.1| transcription-repair coupling factor [Pseudomonas fluorescens WH6] Length = 1149 Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 145/377 (38%), Positives = 210/377 (55%), Gaps = 17/377 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q++ I+ + DM M R++ GDVG GKT VA+ A AV G Q I+ P Sbjct: 601 FEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT 660 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LAQQHY + + + VE+++ A+ +A G+ I+IGTH L D + Sbjct: 661 TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLSDDV 720 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + L LVI+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S I Sbjct: 721 KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT 780 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508 PA R ++T ++ N+ V E L L G + Y++ ++ EK ++ +V Sbjct: 781 PPARRLSVRTFVMEQNK-STVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPE-- 837 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 + IAI HG+M + + E VM F + +LIA+T+IE GIDV A+ IIIE A Sbjct: 838 -------ARIAIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERA 890 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623 + FGLAQLHQLRGRVGR + LL P ++ ++ RL + NT+D GF++A Sbjct: 891 DKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATN 950 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R GE+LG QSG Sbjct: 951 DLEIRGAGELLGDGQSG 967 >gi|294788315|ref|ZP_06753558.1| transcription-repair coupling factor [Simonsiella muelleri ATCC 29453] gi|294483746|gb|EFG31430.1| transcription-repair coupling factor [Simonsiella muelleri ATCC 29453] Length = 1131 Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 162/453 (35%), Positives = 247/453 (54%), Gaps = 21/453 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + Q + T+ Q +AI +L+D++Q M R++ Sbjct: 557 LLNLYAQRAAQTGFKFEINELDYQAFADGFGYEETEDQAAAIVSVLKDLTQAKPMDRLVC 616 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358 GDVG GKT VAL A AV AG Q ++AP +L +QH + F ++ I ++ N Sbjct: 617 GDVGFGKTEVALRAAFVAVMAGKQVAVLAPTTLLVEQHAKNFADRFADFPVQIAQLSRFN 676 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + + AL +A G I+IGTH L QD+IQ+ L LVI+DE+HRFGV+Q+ +L + Sbjct: 677 STK-DTKSALAGMADGTVDIVIGTHKLVQDNIQFKNLGLVIIDEEHRFGVRQKEQLKRLR 735 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLK 476 +L +TATPIPRTL + G D S IT P+ R +KT + P + I E + R Sbjct: 736 ANVDLLTLTATPIPRTLSMALDGLRDFSLITTAPSRRLAVKTFVKPFSEASIQEAVLR-- 793 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 L G + +++ +++ + N R +E N L + + I + HG++ + + E VM Sbjct: 794 -ELKRGGQVFFLHNEVDTIE--NMRDKLE--NLLPQ---ARIGVAHGQLRERELEQVMRD 845 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F N +L+ +T+IE GID+ +A+ III A+ FG+AQLHQLRGRVGR + LL Sbjct: 846 FLNQKFNVLLCSTIIETGIDIPNANTIIINRADKFGIAQLHQLRGRVGRSHHQAYAYLLT 905 Query: 597 HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 L+K++ RL + + ++ GF +A +DL+ R GEILG QSG + + L+ Sbjct: 906 PEYLTKDAQKRLDAILSADELGAGFSLAMQDLEIRGAGEILGEGQSG--EMMQVGLTLYT 963 Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686 +L+ A +D K T PDL S G + I L+ Sbjct: 964 EMLKQAVRDLKKGKT--PDLDSPLGVNTDIKLH 994 >gi|259908777|ref|YP_002649133.1| transcription-repair coupling factor [Erwinia pyrifoliae Ep1/96] gi|224964399|emb|CAX55908.1| Transcription-repair-coupling factor [Erwinia pyrifoliae Ep1/96] gi|283478753|emb|CAY74669.1| Transcription-repair-coupling factor [Erwinia pyrifoliae DSM 12163] Length = 1148 Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 149/409 (36%), Positives = 220/409 (53%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + + Q + PF T Q AI +L DM Q M R++ Sbjct: 568 LLDIYAQRAAKTGFAFKHDKQQYQLFCDSFPFETTVDQAQAINAVLSDMCQPLAMDRLVC 627 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AVE Q ++ P +LAQQHY+ + N + +E+++ Sbjct: 628 GDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMMSRFR 687 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + L G+ I+IGTH L Q+ I++ L L+IVDE+HRFGV+ + ++ Sbjct: 688 TAKEQAQVLADAQEGKVDILIGTHKLLQNDIKWRDLGLLIVDEEHRFGVRHKERIKAMRA 747 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I PA R +KT + DE+ R + +L Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDEMAVR-EAIL 803 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ +E N +R L + +A+ HG+M + + E VM+ Sbjct: 804 REVLRGGQVYYLYNDVE-----NIEKATKRLTELVPE--ARVALGHGQMRERELERVMND 856 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ TT+IE GID+ A+ IIIE A+ FGLAQLHQLRGRVGR + LL Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADRFGLAQLHQLRGRVGRSHHQAYAWLLT 916 Query: 597 -HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 HP ++ +++ RL + + ED GF +A DL+ R GE+LG QSG Sbjct: 917 PHPKAMTTDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEGQSG 965 >gi|213157165|ref|YP_002319210.1| transcription-repair coupling factor [Acinetobacter baumannii AB0057] gi|213056325|gb|ACJ41227.1| transcription-repair coupling factor [Acinetobacter baumannii AB0057] Length = 1153 Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 146/428 (34%), Positives = 230/428 (53%), Gaps = 19/428 (4%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W+ R+ L +A ++ + R+Q K G ++ + + + T Q + Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFAFELDQSLYMQFASGFAYEETLDQAN 612 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI+ L DM Q M R++ GDVG GKT VA+ A AV+ G Q ++ P +LAQQHYE Sbjct: 613 AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 K + + +E+++ K +E +A+G+ I++GTH L Q+++Q+ L L++ Sbjct: 673 SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMV 732 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 VDE+HRFGV+ + ++ +L +TATPIPRTL + G D+S I PA R +K Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792 Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSS 517 T + N + E + L G + Y++ ++E E+ N R +V + Sbjct: 793 T-FVQENTDASIKEAILRELLRGGQVYFLHNEVETIERAAENIRVLVPE---------AR 842 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 +A+ HG+M + + E VM F + +L+ +T+IE GIDV +A+ I+IE A+ GLAQLH Sbjct: 843 VAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQLH 902 Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632 QLRGRVGR + LL L ++ RL ++ GF++A EDL+ R GE Sbjct: 903 QLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGE 962 Query: 633 ILGIKQSG 640 +LG +QSG Sbjct: 963 LLGEQQSG 970 >gi|146296229|ref|YP_001180000.1| transcription-repair coupling factor [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409805|gb|ABP66809.1| transcription-repair coupling factor [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 1143 Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 152/430 (35%), Positives = 239/430 (55%), Gaps = 18/430 (4%) Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EW ++ E++A I L ++Q KK G + + ++ P++ T+ Q Sbjct: 553 LEWQKQKQKVRKSLEVVAKDIVELYAKRQLKK--GFKFSPDTIWQKEFEEKFPYTETEGQ 610 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 AI++I +DM + M RIL GDVG GKT VA+ A AV Q ++ P ILAQQH Sbjct: 611 LQAIEEIKKDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVLVPTTILAQQH 670 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y + ++ I +E+++ ++ ++K L+ + G IIIGTH L + +++ L L Sbjct: 671 YMTFVQRMKDFPITIEVLSRLKSESQQKKILKALKDGTIDIIIGTHRLLSNDVKFKDLGL 730 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +I+DE+H+FGV+ + K+ + VL +TATPIPRTL + LG D+S I + P R P Sbjct: 731 LIIDEEHKFGVEHKEKIKKLKENVDVLTLTATPIPRTLNMALLGIRDLSIIEDPPEDRFP 790 Query: 458 IKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 ++T ++ N I E I LK V S G + +++ ++++ +E VV R +L Sbjct: 791 VQTFVMEYNEKVIKEAI--LKEV-SRGGQVFYLYNRVKDIEE-----VVNRLQALLGE-D 841 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 IA HG+M + E V+ F NG +L+ TT+IE G+D+ + + +I+E+A+ GLAQ Sbjct: 842 IKIAYAHGQMDERQLEEVLIDFINGKYDVLVCTTIIESGVDMPNVNTLIVEDADRLGLAQ 901 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGRVGR +++ + LS+ + RLS +K TE GF IA DL+ R Sbjct: 902 LYQLRGRVGRSNKLAYAYFTFRKDKVLSEEAAKRLSAIKEFTELGSGFKIAMRDLEIRGA 961 Query: 631 GEILGIKQSG 640 G I+G Q G Sbjct: 962 GSIVGKLQHG 971 >gi|169796102|ref|YP_001713895.1| transcription-repair coupling protein [Acinetobacter baumannii AYE] gi|215483557|ref|YP_002325776.1| transcription-repair coupling factor [Acinetobacter baumannii AB307-0294] gi|301345057|ref|ZP_07225798.1| transcription-repair coupling factor [Acinetobacter baumannii AB056] gi|301510356|ref|ZP_07235593.1| transcription-repair coupling factor [Acinetobacter baumannii AB058] gi|301595346|ref|ZP_07240354.1| transcription-repair coupling factor [Acinetobacter baumannii AB059] gi|169149029|emb|CAM86906.1| transcription-repair coupling protein [Acinetobacter baumannii AYE] gi|213987269|gb|ACJ57568.1| transcription-repair coupling factor [Acinetobacter baumannii AB307-0294] Length = 1153 Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 146/428 (34%), Positives = 230/428 (53%), Gaps = 19/428 (4%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W+ R+ L +A ++ + R+Q K G ++ + + + T Q + Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFAFELDQSLYMQFASGFAYEETLDQAN 612 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI+ L DM Q M R++ GDVG GKT VA+ A AV+ G Q ++ P +LAQQHYE Sbjct: 613 AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 K + + +E+++ K +E +A+G+ I++GTH L Q+++Q+ L L++ Sbjct: 673 SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMV 732 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 VDE+HRFGV+ + ++ +L +TATPIPRTL + G D+S I PA R +K Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792 Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSS 517 T + N + E + L G + Y++ ++E E+ N R +V + Sbjct: 793 T-FVQENTDASIKEAILRELLRGGQVYFLHNEVETIERAAENIRVLVPE---------AR 842 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 +A+ HG+M + + E VM F + +L+ +T+IE GIDV +A+ I+IE A+ GLAQLH Sbjct: 843 VAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQLH 902 Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632 QLRGRVGR + LL L ++ RL ++ GF++A EDL+ R GE Sbjct: 903 QLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGE 962 Query: 633 ILGIKQSG 640 +LG +QSG Sbjct: 963 LLGEQQSG 970 >gi|294101748|ref|YP_003553606.1| DEAD/DEAH box helicase domain protein [Aminobacterium colombiense DSM 12261] gi|293616728|gb|ADE56882.1| DEAD/DEAH box helicase domain protein [Aminobacterium colombiense DSM 12261] Length = 1025 Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 151/449 (33%), Positives = 237/449 (52%), Gaps = 22/449 (4%) Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE 258 P A A ++ + R + + RER+ + + L R++ K P+ E Sbjct: 425 LPEEATAETVLDSLRGTRWKKAVEKTRERVREE---VKNLVRLYARRELLKGYAFPVASE 481 Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318 I + + P+ T Q A ++ILQDM + M R+L GDVG GKT +A+ A A Sbjct: 482 --IYRHFVEAFPYVETPDQLRAEQEILQDMESSHPMDRLLVGDVGFGKTEIAMRAAFKAS 539 Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378 EAG Q V++ P ILAQQHY + I VE+++ + + +++ LE G I Sbjct: 540 EAGKQVVVLVPTTILAQQHYHTFRSRMAGFPIRVEVLSRFVSTSRQKRILEDTKKGLVDI 599 Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438 +IGT L Q I++ L L+I+DE+HRFGV + KL VL ++ATPIPRTL L+ Sbjct: 600 LIGTQRLLQKDIEFKDLGLLIIDEEHRFGVMHKEKLKDTREGLDVLTLSATPIPRTLSLS 659 Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV-LSEGKKAYWICPQIEEKKE 497 G S I+ P R P+ T++ P R +I R + L+ G + +++ +I K Sbjct: 660 LRGLRSFSIISTPPYNRVPVLTMVGP--RKKNLIHRAVLQELNRGGQVFFVSNRINRLK- 716 Query: 498 SNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556 ++ L F + I++ HG+M++ D E M F NG +L+ TT++E G+D Sbjct: 717 -------GKYEELKIMFPEARISMAHGQMAEKDLERTMLDFYNGNLDILVCTTIVESGLD 769 Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTR---LSVL 611 + A+ +I+++A+ GLAQ++QLRGRVGR EE + LY PL K + R +S Sbjct: 770 IPRANTLIVDDAQELGLAQMYQLRGRVGRREEGAYAYFLYPETMPLQKETMERFEAISAF 829 Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 + G+ +A +DL+ R G+I+G+ Q G Sbjct: 830 SDIGSGYSLALQDLQIRGSGDIIGVSQHG 858 >gi|163791051|ref|ZP_02185472.1| transcription-repair coupling factor [Carnobacterium sp. AT7] gi|159873696|gb|EDP67779.1| transcription-repair coupling factor [Carnobacterium sp. AT7] Length = 1173 Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 140/402 (34%), Positives = 223/402 (55%), Gaps = 21/402 (5%) Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 ++E+G + + ++ P++ T Q + +I DM QK M R+L GDVG GKT Sbjct: 597 EQEVGYAFSPDDAYQEEFENAFPYTETDDQLRSTAEIKHDMEQKKPMDRLLVGDVGYGKT 656 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 VA+ A+ AV+ G QA + P ILAQQHYE + + + I + +++ + + + Sbjct: 657 EVAMRAVFKAVQEGKQAAFLVPTTILAQQHYETMLQRFADFPIEIGLLSRFRTKKQQNET 716 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 + + GQ I+IGTH + I++ L L+IVDE+ RFGV+ + KL Q VL +T Sbjct: 717 IAGLKKGQVDIVIGTHRILSKDIEFQDLGLLIVDEEQRFGVKHKEKLKQLKAQVDVLTLT 776 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKA 485 ATPIPRTL ++ LG D+S I PA R P++T ++ N + E +ER ++ G + Sbjct: 777 ATPIPRTLHMSMLGVRDLSVIETPPANRYPVQTYVMEQNLGAVREAVER---EMARGGQV 833 Query: 486 YWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543 +++ ++ EKK + ++ + I HG+M++ E+ + F G Sbjct: 834 FYLYNRVATIEKKVDELQQLIP---------DARIGYAHGQMTEGQLENTLFQFIEGEYD 884 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LS 601 +L+ TT+IE G+D+ + + + +ENA+H GL+QL+QLRGRVGR ++ LY P L+ Sbjct: 885 VLVTTTIIETGVDMPNVNTLFVENADHMGLSQLYQLRGRVGRSNRVAYAYFLYQPNKVLN 944 Query: 602 KNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640 + S RL +K+ TE GF IA DL R G +LG +Q G Sbjct: 945 EVSEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNLLGSQQHG 986 >gi|329117227|ref|ZP_08245944.1| transcription-repair coupling factor [Streptococcus parauberis NCFD 2020] gi|326907632|gb|EGE54546.1| transcription-repair coupling factor [Streptococcus parauberis NCFD 2020] Length = 1167 Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 156/444 (35%), Positives = 242/444 (54%), Gaps = 29/444 (6%) Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266 N +++ R K + + E +A D+LL L R Q K G + + ++ Sbjct: 554 NKLNDGRFQKTKQKVTKQVEEIA-DDLLK----LYAERSQLK---GYQFSPDDELQASFE 605 Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 N F T Q + K+I +DM + M R+L GDVG GKT VA+ A AV Q I Sbjct: 606 DNFAFVETDDQIRSSKEIKRDMESSHPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAI 665 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 + P +LAQQHYE K+ ++ + V++++ + + L+R+A G+ IIIGTH L Sbjct: 666 LVPTTVLAQQHYENFKERFEDYPVEVDVLSRFRSKKEQTATLDRLAKGRVDIIIGTHRLL 725 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 + + L L+++DE+ RFGV+ + KL + T VL +TATPIPRTL ++ LG D+S Sbjct: 726 SKDVIFSDLGLIVIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLS 785 Query: 447 KITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRS 502 I P R P++T ++ N + E I R + G + +++ +++ +KK + + Sbjct: 786 VIETPPTNRYPVQTYVMETNPGIVREAIIR---EMDRGGQVFYVYNKVDTIDKKVAQLQE 842 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 +V ++I +HG+MS+I E+ + F +G +L+ATT+IE G+D+ + + Sbjct: 843 LVPE---------ATIGFVHGQMSEIQLENTLIDFISGDYDVLVATTIIETGVDISNVNT 893 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DG 617 + +ENA+H GL+ L+QLRGRVGR I+ L+Y P LS+ S RL +K TE G Sbjct: 894 LFVENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKVLSEISEKRLEAIKGFTELGSG 953 Query: 618 FLIAEEDLKQRKEGEILGIKQSGM 641 F IA DL R G ILG QSG Sbjct: 954 FKIAMRDLSIRGAGNILGASQSGF 977 >gi|289523176|ref|ZP_06440030.1| transcription-repair coupling factor [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503719|gb|EFD24883.1| transcription-repair coupling factor [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 1049 Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 155/439 (35%), Positives = 238/439 (54%), Gaps = 23/439 (5%) Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 +A + L ++ KK G P +G +++ + P+ T Q AI++I +DM + Sbjct: 475 VAADLVSLYALRELKK--GFPFPKDGDMSRHFEKTFPYKETSDQLKAIEEIKRDMEKPVP 532 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R+L GDVG GKT VAL A AVE G Q ++ P +LA+QHYE + I VE Sbjct: 533 MDRVLVGDVGFGKTEVALRAAIKAVEGGKQVAVLVPTTLLAEQHYENFIARIGDMPIRVE 592 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++ QA +R LE G I+IGTH L Q +Q+ L LVI+DE+HRFGV+Q+ Sbjct: 593 QLSRFEGQAKQRLILEDTKKGLVDILIGTHRLLQRDVQFKDLGLVIIDEEHRFGVKQKEL 652 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI- 472 L + VL ++ATPIPRTL + G DIS + P R+P+ TV+ P D ++ Sbjct: 653 LKKLRAEVDVLSISATPIPRTLYMALSGIRDISLLCTPPKERQPVITVVGPWG--DSLVR 710 Query: 473 ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530 E + +S G + +++ +I+ EK+ + + +V + + IIHG++ Sbjct: 711 EAIVREISRGGQVFFVYDRIKGIEKRAQSLKKLVPE---------AKVGIIHGQLPKNVL 761 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 E M F G +L+ TT++E G+D+ A+ +I++NA FGL+QLHQLRGRVGR + Sbjct: 762 ERTMIKFLRGDINVLVCTTIVESGLDIARANTLIVDNAHMFGLSQLHQLRGRVGRRSRQA 821 Query: 591 SCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFL 645 +LY L+K + RL + G+++A DL+ R G +LGI+Q G + + Sbjct: 822 FAYMLYPSDKVLTKEAMQRLEAISECNQLGGGYMLALRDLEIRGGGNLLGIEQHGHVEKI 881 Query: 646 IAQPELHDSLLEIARKDAK 664 Q L+ L+E A K+ K Sbjct: 882 GFQ--LYYKLIEDAMKNLK 898 >gi|81300135|ref|YP_400343.1| transcription-repair coupling factor [Synechococcus elongatus PCC 7942] gi|81169016|gb|ABB57356.1| transcription-repair coupling factor [Synechococcus elongatus PCC 7942] Length = 1153 Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 20/447 (4%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 + LL + Q ++ G + Q++ + P+ PT Q A++ + +DM M R+ Sbjct: 570 VDLLKLYAQRSQQEGHAYPPDQPWQQELEESFPYQPTADQLKAVEAVKRDMESPQPMDRL 629 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 + GDVG GKT VA+ A+ AV AG Q ++AP IL QQHY +K+ I + ++ Sbjct: 630 VCGDVGFGKTEVAVRAIFKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYPIQIGLLNR 689 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 + R+ +R+A G+ +++GTH L Q+ L L++VDE+ RFGV Q+ K+ Sbjct: 690 FRTASERQNIQQRLATGELDVVVGTHQLLSKGTQFRDLGLLVVDEEQRFGVNQKEKIKAL 749 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 T VL ++ATPIPRTL + G ++S IT P R+PIKT ++P + ++ V + Sbjct: 750 KTQVDVLTLSATPIPRTLYMALSGVREMSLITTPPPSRRPIKTHLMPYD-LEAVRTAISQ 808 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 + G + +++ P++E ++ R L E S IA+ HG+M + + E+ M + Sbjct: 809 EIDRGGQVFYVVPRVE-----GIEAIATR---LQEMLPSLRIAVAHGQMPEGELEATMLA 860 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F N ++I TT+IE G+D+ + I+IE+A+ FGL+QL+QLRGRVGR I + L+ Sbjct: 861 FNNNEADVMICTTIIESGLDIPRVNTILIEDAQRFGLSQLYQLRGRVGRA-GIQAHAWLF 919 Query: 597 HPP---LSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIA 647 +P LS + RL ++ G+ +A DL+ R G +LG++QSG + F + Sbjct: 920 YPGETVLSDQARQRLRAIQEFTQLGSGYQLAMRDLEIRGVGNLLGVEQSGQMEAIGFDLY 979 Query: 648 QPELHDSLLEIARKDAKHILTQDPDLT 674 L +SL EI +D + DL+ Sbjct: 980 MEMLQESLQEIRGQDIPQVDDTQIDLS 1006 >gi|157961369|ref|YP_001501403.1| transcription-repair coupling factor [Shewanella pealeana ATCC 700345] gi|157846369|gb|ABV86868.1| transcription-repair coupling factor [Shewanella pealeana ATCC 700345] Length = 1157 Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 148/417 (35%), Positives = 231/417 (55%), Gaps = 25/417 (5%) Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 +A ++ + R+Q + I++E + AQ + P+ T QE+AI+ +L+DM Sbjct: 572 VAAELLDVYARRQARPGEACRIDLE-EYAQ-FANSFPYEETVDQETAIEAVLEDMRSPTA 629 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R++ GDVG GKT VA+ A AV G Q I+ P +LAQQHYE K + +E Sbjct: 630 MDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVAILVPTTLLAQQHYENFKDRFADWPFKIE 689 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 +++ + + ++ + G+ I+IGTH L Q ++ L L+++DE+HRFGV+Q+ K Sbjct: 690 VMSRFKTAKEQTQVMKELLDGKVDIVIGTHKLLQSEAKFENLGLLVIDEEHRFGVRQKEK 749 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 + +L +TATPIPRTL + G D+S I PA R +KT + DE Sbjct: 750 IKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTF---VREYDEATI 806 Query: 474 RLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528 R + +L E G + Y++ +E EK+ + ++ + + HG+M + Sbjct: 807 R-EALLREILRGGQVYFLHNSVETIEKRAAEISELLPE---------ARVVTAHGQMRER 856 Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588 + E VM F + +L+ TT+IE GIDV A+ I+IE A++FGLAQLHQLRGRVGR Sbjct: 857 ELERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIVIERADNFGLAQLHQLRGRVGRSHH 916 Query: 589 ISSCILLY-HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 + L+ HP ++K++ RL + ED GF++A +DL+ R GE+LG +QSG Sbjct: 917 QAYAYLMTPHPKSMTKDARKRLEAIGALEDLGAGFMLATQDLEIRGAGELLGDEQSG 973 >gi|188534138|ref|YP_001907935.1| transcription-repair coupling factor [Erwinia tasmaniensis Et1/99] gi|188029180|emb|CAO97052.1| Transcription-repair coupling factor (ATP-dependent helicase mfd) [Erwinia tasmaniensis Et1/99] Length = 1148 Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 149/406 (36%), Positives = 218/406 (53%), Gaps = 13/406 (3%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + + Q + PF T Q AI +L DM Q M R++ Sbjct: 568 LLDIYAQRAAKTGFAFKHDKQQYQLFCESFPFETTIDQAQAINAVLSDMCQPLAMDRLVC 627 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AVE Q ++ P +LAQQHY+ + N I +E+++ Sbjct: 628 GDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPIRIEMMSRFR 687 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + L G+ I+IGTH L Q+ I++ L L+IVDE+HRFGV+ + ++ Sbjct: 688 TAKEQAQVLADAQEGKVDILIGTHKLLQNEIKWRDLGLLIVDEEHRFGVRHKERIKAMRA 747 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I PA R +KT + + + L+ VL Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDDLSVREAILREVL 807 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 G + Y++ +E N R + L + +AI HG+M + + E VM+ F + Sbjct: 808 -RGGQVYYLYNDVE-----NIEKAATRLSELVPE--ARVAIGHGQMRERELERVMNDFHH 859 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP 598 +L+ TT+IE GID+ A+ IIIE A+ FGLAQLHQLRGRVGR + LL HP Sbjct: 860 QRFNVLVCTTIIETGIDIPTANTIIIERADRFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 Query: 599 -PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 ++ +++ RL + + ED GF +A DL+ R GE+LG QSG Sbjct: 920 KSMTTDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEGQSG 965 >gi|258509516|ref|YP_003172267.1| transcription-repair coupling factor [Lactobacillus rhamnosus GG] gi|257149443|emb|CAR88416.1| Transcription-repair coupling factor [Lactobacillus rhamnosus GG] gi|259650784|dbj|BAI42946.1| transcription-repair coupling factor [Lactobacillus rhamnosus GG] Length = 1175 Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 149/439 (33%), Positives = 239/439 (54%), Gaps = 23/439 (5%) Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270 N K EW R A E +A ++ L +++ +K G + + QK P Sbjct: 559 NVNKLGGTEWQKTKRIVAARIEDIADELIDLYAKREAEK--GYAFGPDDDLQQKFEDEFP 616 Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T Q + K+I +DM + M R+L GDVG GKT VAL A AV+ G Q I+ P Sbjct: 617 YPETPDQLRSAKEIKRDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAVDYGKQVAILVPT 676 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 ILAQQH++ +K + + + +++ + ++ + +G I++GTH L + Sbjct: 677 TILAQQHFDTMKDRFADFPVKIGLLSRFQTPHQNKMTIKGLKNGTIDIVVGTHRLLSKDV 736 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + L L+++DE+ RFGV+ + ++ Q + VL +TATPIPRTL ++ LG D+S I Sbjct: 737 AFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIET 796 Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R PI+T ++ N I E IER + G + +++ ++E+ +ER Sbjct: 797 PPTNRYPIQTFVMEQNPGVIREAIER---EMERGGQVFYLHNRVED---------MERTV 844 Query: 509 SLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 S E +SI HG+M++ E+V+ F +G +L+ TT+IE G+D+ +A+ +IIE Sbjct: 845 SQLEELVPDASIGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIE 904 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIA 621 NA+H+GL+QL+QLRGR+GR ++ +Y P L++ + RL +K+ TE GF IA Sbjct: 905 NADHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIA 964 Query: 622 EEDLKQRKEGEILGIKQSG 640 DL R G +LG +Q G Sbjct: 965 MRDLSIRGAGNLLGKQQHG 983 >gi|311086031|gb|ADP66113.1| transcription-repair coupling factor [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086605|gb|ADP66686.1| transcription-repair coupling factor [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 760 Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 148/431 (34%), Positives = 236/431 (54%), Gaps = 23/431 (5%) Query: 219 EWTSPARE--RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276 +W + + YD A Q+ + +++ K N+E + F T Sbjct: 162 DWNKEKHKISKTVYDH--AAQLLHIYAKRESKTGFAFKKNIEK--YDLFCNDCSFKTTSD 217 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q +K +L+DMS+ M R++ GDVG GKT +A+ A AV Q I+ P +LAQQ Sbjct: 218 QNEVMKFVLKDMSKPIPMDRLICGDVGFGKTEIAMRASFLAVSNKKQVAILVPTTLLAQQ 277 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 HY+ K N + + I++ Q + + +G+ +IIIGTH L +I++ L Sbjct: 278 HYKNFKIRFSNWPVNINILSRFQTQKEQDLIFKHTKNGRINIIIGTHKLLFKNIEWCSLG 337 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 L+I+DE+HRFGV + + + + +L +TATPIPRTL + G D+S I + PA R Sbjct: 338 LLIIDEEHRFGVSHKEIIKKIYSNIDILTLTATPIPRTLNMAMTGIKDLSIIAKPPAQRL 397 Query: 457 PIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 IKT I ++ R ++ +S G + Y+I +++ N ++ ER + L Sbjct: 398 AIKTF---IQEYSPILIRKTILREISRGGQVYYIYNKVQ-----NIMNIAERLSILIPE- 448 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 +SI I HG+M +ID + VM+ F N +LI TT+IE G+D+ A+ IIIEN++HFGL+ Sbjct: 449 -ASIKIGHGQMKNIDLKKVMNEFYNNKFNVLICTTIIESGVDIARANTIIIENSDHFGLS 507 Query: 575 QLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629 QLHQLRGR+GR + +LL + ++ ++ RL + + ++ GF ++ +DL+ R Sbjct: 508 QLHQLRGRIGRSNNQAYALLLVNNFNKITSDAKKRLEAISSVDNFGGGFSLSNQDLEIRG 567 Query: 630 EGEILGIKQSG 640 GEILG +QSG Sbjct: 568 VGEILGKEQSG 578 >gi|152985046|ref|YP_001347529.1| transcription-repair coupling factor [Pseudomonas aeruginosa PA7] gi|150960204|gb|ABR82229.1| transcription-repair coupling factor [Pseudomonas aeruginosa PA7] Length = 1148 Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 143/381 (37%), Positives = 215/381 (56%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q+SAI+ ++ DM M R++ GDVG GKT VA+ A AV +G Q ++ Sbjct: 597 GFPFEETPDQQSAIEAVVADMLAPRPMDRLVCGDVGFGKTEVAMRAAFVAVHSGKQVAVL 656 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A ++A G+ I+IGTH L Q Sbjct: 657 VPTTLLAQQHYNSFRDRFADWPVNVEVMSRFKSAKEVESAARQLAEGKIDILIGTHKLLQ 716 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + +++ L LVI+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 717 EDVRFANLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 776 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504 I PA R ++T + + + + VI E L L G + Y++ +++ EK + +V Sbjct: 777 IATPPARRLSVRTFV--MEQQNAVIKEALLRELLRGGQVYYLHNEVKTIEKCARDLAELV 834 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + I I HG+M + + E VM F + +L+A+T+IE GIDV A+ I+ Sbjct: 835 PE---------ARIGIGHGQMHERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIL 885 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFL 619 IE A+ FGLAQLHQLRGRVGR + LL P ++ ++ RL + N +D GF+ Sbjct: 886 IERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRRQMTPDAEKRLEAIANAQDLGAGFV 945 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG QSG Sbjct: 946 LATHDLEIRGAGELLGDGQSG 966 >gi|330445693|ref|ZP_08309345.1| transcription-repair coupling factor [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489884|dbj|GAA03842.1| transcription-repair coupling factor [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 1143 Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 141/380 (37%), Positives = 214/380 (56%), Gaps = 21/380 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Q ++ P Sbjct: 594 PYEETYDQALAINAVLSDMCQTKVMDRLVCGDVGFGKTEVAMRAAFVAVDNNKQVTVLVP 653 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQH+E + NT I VE+++ +++ L + G+ I+IGTH L S Sbjct: 654 TTLLAQQHFENFRDRFANTPIRVEVLSRFKTAKEQKQILADVEEGKVDILIGTHKLLNSS 713 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + Y+ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S I Sbjct: 714 VNYHDLGLLIVDEEHRFGVRQKEKIKAIRANVDILTLTATPIPRTLNMAMSGMRDLSIIA 773 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSVVE 505 PA R IKT + + ++ + R V+ +S G + Y++ +++ EK + ++ Sbjct: 774 TPPARRLAIKTF---VRQSEDAVIREAVLREISRGGQVYFLHNEVDTIEKTTEDLAKLIP 830 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + + HG+M + + E +M F + +L+ TT+IE GIDV A+ II+ Sbjct: 831 E---------ARVTFAHGQMRERELEKIMGDFYHQRFNVLVCTTIIETGIDVPTANTIIM 881 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED---GFLI 620 + A++ GLAQLHQLRGRVGR + LL HP ++K++ RL + + ED GF + Sbjct: 882 DRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAVKRLEAISSLEDLGAGFTL 941 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG +QSG Sbjct: 942 ATHDLEIRGAGELLGDEQSG 961 >gi|262198049|ref|YP_003269258.1| transcription-repair coupling factor [Haliangium ochraceum DSM 14365] gi|262081396|gb|ACY17365.1| transcription-repair coupling factor [Haliangium ochraceum DSM 14365] Length = 1257 Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 147/436 (33%), Positives = 237/436 (54%), Gaps = 37/436 (8%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q+ AI ++L DM + M R++ GDVG GKT VAL A AV G QA ++AP Sbjct: 685 FEETPDQQRAIDEVLADMESERPMDRLVCGDVGYGKTEVALRACFKAVAGGKQAALLAPT 744 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +L +QHY + + + V ++ +A + ++ +A G +++GTH + + Sbjct: 745 TVLVEQHYATVCERFAGWPVSVGRLSRFQSRAEQLDTIKGLAAGTVDLVVGTHRVLSKDV 804 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L L+++DE+ RFGV + +L + T VL +TATPIPRTL L G D+S I Sbjct: 805 RFKDLGLLVIDEEQRFGVTHKERLKRVRTQLDVLTLTATPIPRTLHLAMSGLRDLSIIAT 864 Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQI---------------EE 494 PA R+ ++T + ++ D V+ E ++ L G + +++CP+I + Sbjct: 865 PPADRRAVRTFVAQVD--DGVLREGIRRELGRGGQVFFVCPRIGADPAPSKGKVKGKGKS 922 Query: 495 KKESNFRSVVER----FNSLHEHF-----TSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545 + E+ R V R + EH + +A+ HG+MS E VM F +G ++L Sbjct: 923 QGETARR--VRRGDISLDEWAEHLRALVPEARVAVAHGQMSAEALEKVMIDFVSGNLEIL 980 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKN 603 ++TT++E G+D+ A+ + ++ A+ FGLAQL+QLRGR+GR ++ + C LL PP LS + Sbjct: 981 VSTTIVESGLDIARANTMFVDRADSFGLAQLYQLRGRIGRSKQRAFCYLLVPPPEKLSSD 1040 Query: 604 SYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG---MPKFLIAQPELHDSLLE 657 + RL L+ + GF IA DL+ R GE+LG KQSG F L +++ E Sbjct: 1041 ARRRLETLQRFSELGAGFQIASHDLEIRGGGELLGAKQSGAIAAVGFEAYAAMLEEAVAE 1100 Query: 658 IARKDAKHILTQDPDL 673 + DA + +DP+L Sbjct: 1101 LRSGDAGLVRPRDPEL 1116 >gi|311087715|gb|ADP67794.1| transcription-repair coupling factor [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 760 Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 148/431 (34%), Positives = 236/431 (54%), Gaps = 23/431 (5%) Query: 219 EWTSPARE--RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276 +W + + YD A Q+ + +++ K N+E + F T Sbjct: 162 DWNKEKHKISKTVYDH--AAQLLHIYAKRESKTGFAFKKNIEK--YDLFCNDCSFKTTSD 217 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q +K +L+DMS+ M R++ GDVG GKT +A+ A AV Q I+ P +LAQQ Sbjct: 218 QNEVMKFVLKDMSKPIPMDRLICGDVGFGKTEIAMRASFLAVSNKKQVAILVPTTLLAQQ 277 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 HY+ K N + + I++ Q + + +G+ +IIIGTH L +I++ L Sbjct: 278 HYKNFKIRFSNWPVNINILSRFQTQKEQDLIFKHTKNGRINIIIGTHKLLFKNIEWCSLG 337 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 L+I+DE+HRFGV + + + + +L +TATPIPRTL + G D+S I + PA R Sbjct: 338 LLIIDEEHRFGVSHKEIIKKIYSNIDILTLTATPIPRTLNMAMTGIKDLSIIAKPPAQRL 397 Query: 457 PIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 IKT I ++ R ++ +S G + Y+I +++ N ++ ER + L Sbjct: 398 AIKTF---IQEYSPILIRKTILREISRGGQVYYIYNKVQ-----NIMNIAERLSILIPE- 448 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 +SI I HG+M +ID + VM+ F N +LI TT+IE G+D+ A+ IIIEN++HFGL+ Sbjct: 449 -ASIKIGHGQMKNIDLKKVMNEFYNNKFNVLICTTIIESGVDIARANTIIIENSDHFGLS 507 Query: 575 QLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629 QLHQLRGR+GR + +LL + ++ ++ RL + + ++ GF ++ +DL+ R Sbjct: 508 QLHQLRGRIGRSNNQAYALLLVNNFNKITSDAKKRLEAISSVDNFGGGFSLSNQDLEIRG 567 Query: 630 EGEILGIKQSG 640 GEILG +QSG Sbjct: 568 VGEILGKEQSG 578 >gi|163793172|ref|ZP_02187148.1| Transcription-repair coupling factor [alpha proteobacterium BAL199] gi|159181818|gb|EDP66330.1| Transcription-repair coupling factor [alpha proteobacterium BAL199] Length = 1162 Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 149/441 (33%), Positives = 232/441 (52%), Gaps = 24/441 (5%) Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 ++ G IA+ R+ + + P+N + + P++ T+ Q AI D+L D+ Sbjct: 579 DMAEGLIAIAAEREVRRTQ---PLNPPSGVYDEFCARFPYTETEDQLRAIDDVLSDLGSG 635 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351 M R++ GDVG GKT VAL A AV G Q ++ P +L +QH+ + Q I Sbjct: 636 KPMDRLVCGDVGFGKTEVALRAALVAVMQGYQVAVVVPTTLLCRQHFRGFRDRFQGLPIR 695 Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411 VE ++ + + + IA G ++++GTHA+ + + L LV+VDE+ FGV Q+ Sbjct: 696 VEQLSRLVTPKDASEVRKGIASGDVNLVVGTHAVLSKQVSFSNLGLVVVDEEQHFGVAQK 755 Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471 +L HVL MTATPIPRTL + G ++S I P R ++T ++P D V Sbjct: 756 ERLKDLRKEVHVLTMTATPIPRTLQMALSGVRELSLIATPPVDRLAVRTFVMP---YDGV 812 Query: 472 IERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528 I R + +L E G K +++CP++E + V +R L + + HGRM+ Sbjct: 813 IIR-EAILRERYRGGKTFYVCPRVE-----DLVRVHDRLTKLVPEV--QVGVAHGRMTPT 864 Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588 + E VM +F +G +L++T ++E G+D+ A+ I+I A+ FGLAQL+QLRGRVGR + Sbjct: 865 ELEDVMTAFTDGGFDVLLSTNIVESGLDIASANTIVIHRADMFGLAQLYQLRGRVGRSKT 924 Query: 589 ISSCILLYHP-----PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643 + L HP P++K + L N GF +A D+ R G +LG +QSG K Sbjct: 925 RAYGYLTTHPSKVLTPVAKRRLEVMQTLDNLGAGFSLASHDMDIRGAGNLLGEEQSGHVK 984 Query: 644 FLIAQPELHDSLLEIARKDAK 664 + EL+ LL A + AK Sbjct: 985 EV--GIELYQELLREAVEAAK 1003 >gi|75908979|ref|YP_323275.1| transcription-repair coupling factor [Anabaena variabilis ATCC 29413] gi|75702704|gb|ABA22380.1| transcription-repair coupling factor [Anabaena variabilis ATCC 29413] Length = 1188 Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 138/381 (36%), Positives = 216/381 (56%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q A++D+ +DM M R++ GDVG GKT VA+ A+ AV +G Q ++ Sbjct: 636 SFPYQATTDQLKAVQDVKRDMESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTSGKQVALL 695 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 AP IL QQHY IK+ + V ++ RR +R+A G+ I++GTH L Sbjct: 696 APTTILTQQHYHTIKERFAPYPVNVGLLNRFRTAEERRNIQKRLATGELDIVVGTHQLLG 755 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 S+ + L L+++DE+ RFGV Q+ K+ T VL ++ATPIPRTL ++ G ++S Sbjct: 756 KSVNFKDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSLSGIREMSL 815 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 IT P R+PIKT + P N + V ++ L G + +++ P+++ E+ +N R +V Sbjct: 816 ITTPPPTRRPIKTHLSPRNP-ESVRSAIRQELDRGGQVFYVVPRVDGIEEITANLREMVP 874 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + AI HG+M + + ES M +F NG +L+ TT+IE G+D+ + I+I Sbjct: 875 ---------GARFAIAHGQMDESELESTMLTFSNGDADILVCTTIIESGLDIPRVNTILI 925 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLK---NTEDGFL 619 E+A FGL+QL+QLRGRVGR I + L++P LS + RL ++ G+ Sbjct: 926 EDAHRFGLSQLYQLRGRVGRA-GIQAHAWLFYPKQRELSDAARQRLRAIQEFTQLGSGYQ 984 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A D++ R G +LG +QSG Sbjct: 985 LAMRDMEIRGVGNLLGAEQSG 1005 >gi|304310931|ref|YP_003810529.1| Transcription repair coupling factor [gamma proteobacterium HdN1] gi|301796664|emb|CBL44876.1| Transcription repair coupling factor [gamma proteobacterium HdN1] Length = 1162 Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 145/385 (37%), Positives = 214/385 (55%), Gaps = 17/385 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + F T QESAI+ ++ DM+ M R++ GDVG GKT VA+ A AV++G Sbjct: 599 QAFVDGFRFEETPDQESAIQAVMADMTSPRPMDRLVCGDVGFGKTEVAMRAAFIAVQSGK 658 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P +LAQQHYE +K NT + +E+++ + +AL + G+ I++GT Sbjct: 659 QVAILVPTTLLAQQHYETLKDRFSNTPVNIEVLSRFRTSKEQTRALALLEEGRIDIVVGT 718 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q++I++ L L+IVDE+HRFGV+ + KL +L +TATPIPRTL + Sbjct: 719 HKLLQENIRFKDLGLIIVDEEHRFGVRHKEKLKAIRADVDMLTLTATPIPRTLNMALSSI 778 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNF 500 D+S I PA R IKT + R + E + L G + Y++ ++ EK + Sbjct: 779 RDLSIIATPPAKRLSIKTFVREA-RDSLIKEAILRELLRGGQVYYLHNEVSTIEKTAQHI 837 Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560 S+V + +AI HG+M + + E VM F + +L+ TT+IE GIDV A Sbjct: 838 ESLVPE---------ARVAIAHGQMRERELERVMTDFYHKRFNVLVCTTIIETGIDVPSA 888 Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED-- 616 + I+++ A+ GLAQLHQLRGRVGR + LL LS +++ RL + D Sbjct: 889 NTIVMDRADKLGLAQLHQLRGRVGRSHHQAYAYLLTPNAKALSDDAHKRLEAITLAHDLG 948 Query: 617 -GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 949 AGFTLASHDLEIRGAGELLGDEQSG 973 >gi|148653434|ref|YP_001280527.1| transcription-repair coupling factor [Psychrobacter sp. PRwf-1] gi|148572518|gb|ABQ94577.1| transcription-repair coupling factor [Psychrobacter sp. PRwf-1] Length = 1271 Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 161/465 (34%), Positives = 247/465 (53%), Gaps = 25/465 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W ++ L +A ++ + R+Q K+ GI VE + F T Q Sbjct: 666 KWDKAKQKALEQIHDVAAELLNMQARRQAKE--GIHFKVETAQYELFASQFAFEETPDQA 723 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI ++ DM Q M R++ GDVG GKT VA+ A AV +G Q ++ P +LA QH Sbjct: 724 NAIDAVMHDMKQNKPMDRLICGDVGFGKTEVAMRAAFIAVNSGYQVAVLVPTTLLAGQHE 783 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + K + I VE ++ + ++ + LE +A G+ I+IGTH L Q +++ L L+ Sbjct: 784 DNFKDRFADWPIRVETLSRFGGKKYQDQVLEDLAAGKVDIVIGTHKLLQKDVKFANLGLM 843 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+HRFGV+ + ++ + L MTATPIPRTL + G D+S I PA R I Sbjct: 844 IVDEEHRFGVRHKERIKAIQSDVDSLSMTATPIPRTLNMALTGMRDMSIIATPPARRLSI 903 Query: 459 KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515 KT + + + ++++ E + L G + Y + + E+ N R +V Sbjct: 904 KTFV--MQKTNQLMKEAILRELLRGGQVYLLHNDVASIERMAENIRELVPE--------- 952 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + + + HG+M++ E VM F + +L+ TT+IE GIDV +A+ IIIE A+ FGLAQ Sbjct: 953 ARVGVAHGQMNERGLEQVMQQFYHKKFNVLVCTTIIETGIDVPNANTIIIERADKFGLAQ 1012 Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630 LHQLRGRVGR + C LL L ++ RL+ ++ GF++A EDL+ R Sbjct: 1013 LHQLRGRVGRSHHQAYCYLLVPSVKGLKGDAKKRLTAIERANTLGAGFMLASEDLEIRGA 1072 Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 GEILG +QSG + + L+ +LE A K K ++PDL + Sbjct: 1073 GEILGKQQSGNMQAIGF--SLYMDMLERATKAIK--AGKEPDLNT 1113 >gi|89075823|ref|ZP_01162207.1| putative transcription-repair coupling factor [Photobacterium sp. SKA34] gi|89048444|gb|EAR54020.1| putative transcription-repair coupling factor [Photobacterium sp. SKA34] Length = 1153 Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 144/430 (33%), Positives = 232/430 (53%), Gaps = 23/430 (5%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W+ R+ +A ++ + +++ K G ++ + + P+ T Q Sbjct: 556 WSKARRKAAEKVRDVAAELLDVYAKRELKP--GFKFTLDREAYAEFSAGFPYEETYDQAL 613 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI ++ DM Q M R++ GDVG GKT VA+ A AV+ Q ++ P +LAQQH+E Sbjct: 614 AINAVMSDMCQTKVMDRLVCGDVGFGKTEVAMRAAFVAVDNNKQVTVLVPTTLLAQQHFE 673 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 + NT + VE+++ +++ L + G+ I+IGTH L S+ Y+ L L++ Sbjct: 674 NFRDRFANTPVRVEVLSRFKTSKEQKQILADVEEGKIDILIGTHKLLNSSVNYHDLGLLV 733 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 VDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S I PA R IK Sbjct: 734 VDEEHRFGVRQKEKIKAIRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 793 Query: 460 TVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515 T + + D+ + R ++ +S G + Y++ +++ EK + ++ Sbjct: 794 TF---VRQSDDAVIREAILREISRGGQVYFLHNEVDSIEKTTEDLAKLIPE--------- 841 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + I HG+M + + E +M F + +L+ TT+IE GIDV A+ II++ A++ GLAQ Sbjct: 842 ARITFAHGQMRERELEKIMGDFYHQRFNVLVCTTIIETGIDVPTANTIIMDRADNLGLAQ 901 Query: 576 LHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630 LHQLRGRVGR + LL HP ++K++ RL + + ED GF +A DL+ R Sbjct: 902 LHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAVKRLEAISSLEDLGAGFTLATHDLEIRGA 961 Query: 631 GEILGIKQSG 640 GE+LG +QSG Sbjct: 962 GELLGDEQSG 971 >gi|170726164|ref|YP_001760190.1| transcription-repair coupling factor [Shewanella woodyi ATCC 51908] gi|169811511|gb|ACA86095.1| transcription-repair coupling factor [Shewanella woodyi ATCC 51908] Length = 1157 Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 139/380 (36%), Positives = 214/380 (56%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + PF T QE++I +L DMS M R++ GDVG GKT VA+ A AV G Q I+ Sbjct: 604 SFPFEETVDQETSINAVLTDMSSPIAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVAIL 663 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E K + + +E+++ ++ LE +++G+ I+IGTH L Q Sbjct: 664 VPTTLLAQQHFENFKDRFADWPVKIEVMSRFKTAKEQKAVLEDLSNGKVDIVIGTHKLLQ 723 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 ++ L L+++DE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 724 SEAKFENLGLLVIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSI 783 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R +KT + + + E L + G + Y++ +E EK+ + ++ Sbjct: 784 IATPPAKRLAVKTFVREYDNA-AIREALLREILRGGQVYFLHNTVETIEKRAAEISELLP 842 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + + HG+M + + E VM F + +L+ TT+IE GID+ A+ I+I Sbjct: 843 E---------ARVITAHGQMRERELEKVMSDFYHQRFNVLVCTTIIETGIDIPSANTIVI 893 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + L+ HP ++K++ RL + ED GF++ Sbjct: 894 ERADKFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKSMTKDARKRLEAIGALEDLGAGFML 953 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A +DL+ R GE+LG +QSG Sbjct: 954 ATQDLEIRGAGELLGDEQSG 973 >gi|114320951|ref|YP_742634.1| transcription-repair coupling factor [Alkalilimnicola ehrlichii MLHE-1] gi|114227345|gb|ABI57144.1| transcription-repair coupling factor [Alkalilimnicola ehrlichii MLHE-1] Length = 1166 Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 144/386 (37%), Positives = 209/386 (54%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q PF T QESAI + DM M R++ GDVG GKT VA+ A ++ G Sbjct: 605 QAFADAFPFEETPDQESAIAAVEADMRSSRPMDRVVCGDVGFGKTEVAMRAAFMGIQDGR 664 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q +M P +LAQQH++ + + + VE+++ L +A G+ I+IGT Sbjct: 665 QVAVMVPTTLLAQQHFQNFRDRFSDWPVRVEVLSRFRSTKDTNAVLRDLADGKVDIVIGT 724 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L QDS++Y L LVI+DE+HRFGV+Q+ KL + +L +TATPIPRTL ++ G Sbjct: 725 HKLLQDSVKYKDLGLVIIDEEHRFGVRQKEKLKKLRAEVDILTLTATPIPRTLNMSLAGI 784 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVI--ERLKVVLSEGKKAYWICPQIEEKKESNF 500 D+S I PA R +KT +N+ D I E + L G + Y++ ++ Sbjct: 785 RDLSIIATPPARRLAVKTF---VNQWDPAIIQEACQRELKRGGQIYFL--------HNDL 833 Query: 501 RSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 S+ L E + + + HG+M + D E VM F + +L+ +T+IE GIDV Sbjct: 834 DSIDRIARELEELVPDARVDVAHGQMPERDLERVMLDFYHQRFNILVCSTIIESGIDVPT 893 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED- 616 A+ I+I A+ GLAQLHQLRGRVGR + L+ P ++ ++ RL + N ED Sbjct: 894 ANTILINRADKLGLAQLHQLRGRVGRSHHRAYAYLIAPPEKAMTADAKKRLEAISNLEDL 953 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 954 GVGFALASHDLEIRGAGELLGEEQSG 979 >gi|296328784|ref|ZP_06871298.1| transcription-repair coupling factor [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154119|gb|EFG94923.1| transcription-repair coupling factor [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 981 Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 144/375 (38%), Positives = 224/375 (59%), Gaps = 13/375 (3%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF+ T +Q AI+D+ +DM M R++ GDVG GKT VA+ A AV G Q +++ P Sbjct: 452 PFTETPAQLKAIEDVKRDMESGKVMDRLICGDVGFGKTEVAIRATFKAVMDGKQVILLVP 511 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHYE + +N + +EI++ + + ++L+RI +G A ++IGTH L D Sbjct: 512 TTVLAEQHYERFSERFKNYPVHIEILSRVQSKKEQVESLKRIENGSADLVIGTHRLLSDD 571 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ + L+I+DE+ +FGV+ + KL + VL +TATPIPRTL L+ LG D+S I Sbjct: 572 IRFKDIGLLIIDEEQKFGVKAKEKLKKIKGNLDVLTLTATPIPRTLNLSLLGIRDLSVID 631 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P GR+ I T I N+ I E+I L + EG + ++I + ++ ES + + E Sbjct: 632 TSPEGRQKIHTEYIDNNKNFIKEII--LSEISREG-QVFYIFNSV-KRMESKVKEIRE-- 685 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 L E+ ++ IHG+M D + + F+NG +L+ATT+IE GID+ +A+ +IIE Sbjct: 686 -LLPEYI--KVSYIHGQMLPRDIKKNIQDFENGNVDVLVATTIIENGIDIENANTMIIEG 742 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEEDL 625 E GL+Q++QLRGR+GR + S C +L + +KN+ R ++ ++ G +A ED Sbjct: 743 VEKLGLSQVYQLRGRIGRSTKKSYCYMLMNENKTKNAKKREESIREFDNLTGIDLAMEDS 802 Query: 626 KQRKEGEILGIKQSG 640 K R GEILG KQ G Sbjct: 803 KIRGVGEILGEKQHG 817 >gi|163802119|ref|ZP_02196015.1| transcription-repair coupling factor [Vibrio sp. AND4] gi|159174260|gb|EDP59068.1| transcription-repair coupling factor [Vibrio sp. AND4] Length = 1153 Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 141/382 (36%), Positives = 213/382 (55%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI +L DM Q M R++ GDVG GKT VA+ A A + Q I+ Sbjct: 599 TFPFEETDDQSMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAIL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ ++ L+ +A G+ I++GTH L Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLS 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 719 SDIKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503 I PA R IKT + + ++ + R V+ + G + Y++ Q+E EK + + + Sbjct: 779 IATPPARRLSIKTF---VRQCEDSVVREAVLREIMRGGQVYFLHNQVETIEKTAEDLQKL 835 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + + + + HG+M + + E +M F + +L+ TT+IE GIDV A+ I Sbjct: 836 IPE---------ARLTVAHGQMRERELERIMSDFYHQRFNVLVCTTIIETGIDVPTANTI 886 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GF 618 I++ A++ GLAQLHQLRGRVGR + LL HP ++K++ RL + + ED GF Sbjct: 887 IMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAITKDAIKRLDAIASLEDLGAGF 946 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG +QSG Sbjct: 947 TLATHDLEIRGAGELLGDEQSG 968 >gi|312864113|ref|ZP_07724348.1| transcription-repair coupling factor [Streptococcus vestibularis F0396] gi|311100345|gb|EFQ58553.1| transcription-repair coupling factor [Streptococcus vestibularis F0396] Length = 1066 Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 143/379 (37%), Positives = 216/379 (56%), Gaps = 19/379 (5%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 ++ T Q +IK++ +DM M R+L GDVG GKT VA+ A AV G Q I+ P Sbjct: 483 YAETVDQLRSIKEVKEDMESDKPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPT 542 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA QHY K+ +N + V+ ++ + + + +E +A G+ IIIGTH L + Sbjct: 543 TVLAHQHYLNFKERFENHAVEVDELSRFRSKKEQNETIENLAKGRIDIIIGTHRLLSKDV 602 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L L+++DE+ RFGV+ + KL + VL +TATPIPRTL ++ LG D+S I Sbjct: 603 KFSDLGLLVIDEEQRFGVKHKEKLKELKAKVDVLTLTATPIPRTLHMSMLGIRDLSIIET 662 Query: 451 KPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R P++T ++ N I E I R + G + ++I ++E ++ ++ + Sbjct: 663 APTNRYPVQTYVMETNPGLIREAILR---EMDRGGQIFYIYNRVE--------TIDKKVS 711 Query: 509 SLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 LHE + I +HG+MS++ E+ + F NG +L+ATT+IE GID+ + + + IEN Sbjct: 712 ELHELVPEARIGFVHGQMSEVMLENTLLDFLNGDYDVLVATTIIETGIDISNVNTLFIEN 771 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622 A+H GL+ L+QLRGRVGR I+ L+Y P L++ S RL +K TE GF IA Sbjct: 772 ADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEVSEKRLDAIKGFTELGSGFKIAM 831 Query: 623 EDLKQRKEGEILGIKQSGM 641 DL R G ILG QSG Sbjct: 832 RDLSIRGAGNILGSSQSGF 850 >gi|26988872|ref|NP_744297.1| transcription-repair coupling factor [Pseudomonas putida KT2440] gi|24983679|gb|AAN67761.1|AE016407_5 transcription-repair coupling factor [Pseudomonas putida KT2440] Length = 1149 Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 143/380 (37%), Positives = 211/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q++AI+ + DM M R++ GDVG GKT VA+ A AV +G Q ++ Sbjct: 598 GFPFEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVL 657 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A +A G+ I+IGTH L Q Sbjct: 658 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQ 717 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D +++ L L I+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 718 DDVRFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSI 777 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R ++T ++ N+ V E L L G + Y++ ++ EK ++ +V Sbjct: 778 IATPPARRLSVRTFVMEQNK-STVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 836 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + I I HG+M + + E VM F + +L+A+T+IE GIDV A+ I+I Sbjct: 837 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVI 887 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL +S ++ RL + NT+D GF++ Sbjct: 888 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVL 947 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 948 ATNDLEIRGAGELLGEGQSG 967 >gi|167032697|ref|YP_001667928.1| transcription-repair coupling factor [Pseudomonas putida GB-1] gi|166859185|gb|ABY97592.1| transcription-repair coupling factor [Pseudomonas putida GB-1] Length = 1141 Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 143/380 (37%), Positives = 211/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q++AI+ + DM M R++ GDVG GKT VA+ A AV +G Q ++ Sbjct: 590 GFPFEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVL 649 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A +A G+ I+IGTH L Q Sbjct: 650 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQ 709 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D +++ L L I+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 710 DDVRFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSI 769 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R ++T ++ N+ V E L L G + Y++ ++ EK ++ +V Sbjct: 770 IATPPARRLSVRTFVMEQNK-STVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 828 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + I I HG+M + + E VM F + +L+A+T+IE GIDV A+ I+I Sbjct: 829 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVI 879 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL +S ++ RL + NT+D GF++ Sbjct: 880 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVL 939 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 940 ATNDLEIRGAGELLGEGQSG 959 >gi|223933455|ref|ZP_03625440.1| transcription-repair coupling factor [Streptococcus suis 89/1591] gi|223897893|gb|EEF64269.1| transcription-repair coupling factor [Streptococcus suis 89/1591] Length = 1164 Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 140/377 (37%), Positives = 216/377 (57%), Gaps = 21/377 (5%) Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T Q +I +I QDM + + M R+L GDVG GKT VA+ A AV G Q I+ P +L Sbjct: 614 TDDQLRSIDEIKQDMEKDSPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPTTVL 673 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 AQQHY ++ + V++++ +A + K LE++ GQ I+IGTH L + + Sbjct: 674 AQQHYANFQERFAEFPVNVDVMSRFKTKAEQEKTLEKLKKGQVDILIGTHRLLSKDVVFA 733 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L L+++DE+ RFGV+ + +L + VL +TATPIPRTL ++ LG D+S I P Sbjct: 734 DLGLLVIDEEQRFGVKHKERLKELKKKIDVLTLTATPIPRTLQMSMLGIRDLSVIETPPT 793 Query: 454 GRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNS 509 R P++T ++ N I + + R + G + Y++ +++ E+K S + +V Sbjct: 794 NRYPVQTYVMETNPSVIRDAMLR---EIDRGGQVYYLYNKVDTIEQKVSELKELVPE--- 847 Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 ++I +HG+MS+I E+ + +F G +L+ TT+IE G+D+ +A+ + IENA+ Sbjct: 848 ------ATIGYVHGQMSEIQLENTLYAFVEGEYDILVTTTIIETGVDIPNANTLFIENAD 901 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEED 624 H GL+ L+QLRGRVGR I+ L+Y P L++ + RL +K TE GF IA +D Sbjct: 902 HMGLSTLYQLRGRVGRSSRIAYAYLMYRPDKSLTEVAEKRLEAIKGFTELGSGFKIAMQD 961 Query: 625 LKQRKEGEILGIKQSGM 641 L R G ILG QSG Sbjct: 962 LSIRGAGNILGAAQSGF 978 >gi|326387814|ref|ZP_08209420.1| transcription-repair coupling factor [Novosphingobium nitrogenifigens DSM 19370] gi|326207860|gb|EGD58671.1| transcription-repair coupling factor [Novosphingobium nitrogenifigens DSM 19370] Length = 1161 Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 155/441 (35%), Positives = 247/441 (56%), Gaps = 26/441 (5%) Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 +AGQ+ ++ ++ P+ + + P++ T+ QE AI+D+L DM+ Sbjct: 571 MAGQLMATAAQRALRQ--ADPLETDPASYGPFVDRFPWNETEDQERAIEDVLGDMASGKP 628 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY-EFIKKYTQNTQIIV 352 M R++ GDVG GKT VAL A A AG Q ++AP +LA+QHY F+++++ + + Sbjct: 629 MDRLVCGDVGFGKTEVALRAAFVAAMAGHQVAVVAPTTLLARQHYTSFVERFS-GFPLQI 687 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 ++ +P + +A+G I+IGTHAL ++++ +L LVIVDE+ RFGV + Sbjct: 688 GRLSRLVPAKEAAETRSGLANGTVDIVIGTHALLSKTVEFRRLGLVIVDEEQRFGVTHKE 747 Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 KL + T HVL +TATPIPRTL + G ++S I P R ++T ++P D+V+ Sbjct: 748 KLKELKTDVHVLTLTATPIPRTLQMAMSGLRELSTIQTPPVDRLAVRTYVMP---WDDVV 804 Query: 473 ERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529 R +L E G +++ + P+I + E +E + L+ +++ HG+MS D Sbjct: 805 IR-DALLREHQRGGQSFIVVPRIADMPE------MEEWLRLNVPEIRAVS-AHGQMSSSD 856 Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589 E M +F + ++L++TT+IE GID+ A+ II+ A+ FGLAQL+QLRGRVGRG+ Sbjct: 857 VEDRMSAFYDKKYEVLLSTTIIESGIDIPSANTIILHRADRFGLAQLYQLRGRVGRGKLR 916 Query: 590 SSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK- 643 + L Y + LS+ + RL VL + + GF +A DL R G +LG +QSG K Sbjct: 917 AYAYLTYPENQALSEIAEKRLKVLGDLDSLGAGFQLASHDLDLRGAGNLLGDEQSGHIKE 976 Query: 644 --FLIAQPELHDSLLEIARKD 662 F + Q L D++L D Sbjct: 977 VGFELYQSMLEDAILAAKAGD 997 >gi|302023115|ref|ZP_07248326.1| transcription-repair coupling factor [Streptococcus suis 05HAS68] gi|330831857|ref|YP_004400682.1| transcription-repair coupling factor [Streptococcus suis ST3] gi|329306080|gb|AEB80496.1| transcription-repair coupling factor [Streptococcus suis ST3] Length = 1164 Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 140/377 (37%), Positives = 216/377 (57%), Gaps = 21/377 (5%) Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T Q +I +I QDM + + M R+L GDVG GKT VA+ A AV G Q I+ P +L Sbjct: 614 TDDQLRSIDEIKQDMEKDSPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPTTVL 673 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 AQQHY ++ + V++++ +A + K LE++ GQ I+IGTH L + + Sbjct: 674 AQQHYANFQERFAEFPVNVDVMSRFKTKAEQEKTLEKLKKGQVDILIGTHRLLSKDVVFA 733 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L L+++DE+ RFGV+ + +L + VL +TATPIPRTL ++ LG D+S I P Sbjct: 734 DLGLLVIDEEQRFGVKHKERLKELKKKIDVLTLTATPIPRTLQMSMLGIRDLSVIETPPT 793 Query: 454 GRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNS 509 R P++T ++ N I + + R + G + Y++ +++ E+K S + +V Sbjct: 794 NRYPVQTYVMETNPSVIRDAMLR---EIDRGGQVYYLYNKVDTIEQKVSELKELVPE--- 847 Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 ++I +HG+MS+I E+ + +F G +L+ TT+IE G+D+ +A+ + IENA+ Sbjct: 848 ------ATIGYVHGQMSEIQLENTLYAFVEGEYDILVTTTIIETGVDIPNANTLFIENAD 901 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEED 624 H GL+ L+QLRGRVGR I+ L+Y P L++ + RL +K TE GF IA +D Sbjct: 902 HMGLSTLYQLRGRVGRSSRIAYAYLMYRPDKSLTEVAEKRLEAIKGFTELGSGFKIAMQD 961 Query: 625 LKQRKEGEILGIKQSGM 641 L R G ILG QSG Sbjct: 962 LSIRGAGNILGAAQSGF 978 >gi|255543481|ref|XP_002512803.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223547814|gb|EEF49306.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] Length = 857 Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 138/380 (36%), Positives = 219/380 (57%), Gaps = 17/380 (4%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 P+ PT Q A D+ +D++++ M R++ GDVG GKT VAL A+ V AG QA+++ Sbjct: 268 FPYEPTPDQFQAFNDVEKDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 327 Query: 328 APIGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 AP +LA+QH+E I +++++ + I V +++ Q+ + E I G +I++GTH+L Sbjct: 328 APTIVLAKQHFEVISERFSKYSNIKVGLLSRFQTQSVKEMYYEMIKQGDLNIVVGTHSLL 387 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 + Y L L++VDE+ RFGV+Q+ K+ T+ VL ++ATPIPRTL L G D S Sbjct: 388 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDAS 447 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 I+ P R P+KT + ++ ++VI +K L + +++ P I + + E Sbjct: 448 LISTAPPERVPVKTFLSAYSK-EKVISAIKYELDRDGQVFYVLPLI--------KGLEEV 498 Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L + F AI HG+ E M+ F G K+LI T ++E G+D+ +A+ III Sbjct: 499 MDFLEQSFPKVEKAIAHGKQYSKQLEETMEKFVQGEIKILICTNIVESGLDIQNANTIII 558 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLI 620 ++ +HFGLAQL+QLRGRVGR ++ + L Y LS + RL L+ ++ GF + Sbjct: 559 QDIQHFGLAQLYQLRGRVGRADKEAYAHLFYPDKSLLSDQALERLKALEECKELGQGFQL 618 Query: 621 AEEDLKQRKEGEILGIKQSG 640 AE D+ R G I G +Q+G Sbjct: 619 AERDMGIRGFGTIFGEQQTG 638 >gi|325277315|ref|ZP_08142941.1| transcription-repair coupling factor [Pseudomonas sp. TJI-51] gi|324097550|gb|EGB95770.1| transcription-repair coupling factor [Pseudomonas sp. TJI-51] Length = 1149 Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 143/380 (37%), Positives = 211/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q++AI+ + DM M R++ GDVG GKT VA+ A AV +G Q ++ Sbjct: 598 GFPFEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVL 657 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A +A G+ I+IGTH L Q Sbjct: 658 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQ 717 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D +++ L L I+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 718 DDVRFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSI 777 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R ++T ++ N+ V E L L G + Y++ ++ EK ++ +V Sbjct: 778 IATPPARRLSVRTFVMEQNK-STVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 836 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + I I HG+M + + E VM F + +L+A+T+IE GIDV A+ I+I Sbjct: 837 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVI 887 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL +S ++ RL + NT+D GF++ Sbjct: 888 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVL 947 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 948 ATNDLEIRGAGELLGEGQSG 967 >gi|226953095|ref|ZP_03823559.1| transcription-repair coupling factor [Acinetobacter sp. ATCC 27244] gi|226836187|gb|EEH68570.1| transcription-repair coupling factor [Acinetobacter sp. ATCC 27244] Length = 1153 Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 148/428 (34%), Positives = 229/428 (53%), Gaps = 19/428 (4%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W+ R+ L +A ++ + R+Q K G ++ + + T Q + Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFAFELDHIAYMQFASGFAYEETLDQAN 612 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI+ L DM M R++ GDVG GKT VA+ A AV+ G Q ++ P +LAQQHYE Sbjct: 613 AIEATLHDMQLAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 K +T + +E+++ K +E +A G+ I++GTH + Q++IQ+ L L+I Sbjct: 673 SFKDRFADTAVRIEVLSRFGSNKTHLKIIEDLADGKVDIVVGTHKILQENIQFNNLGLMI 732 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 VDE+HRFGV+ + ++ +L +TATPIPRTL + G D+S I PA R +K Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792 Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSS 517 T + + D + E + L G + Y++ ++E E+ N R +V + Sbjct: 793 T-FVQEHTDDSIKEAILRELLRGGQVYFLHNEVETIERAAENIRHLVPE---------AR 842 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 +A+ HG+M + + E VM F + +L+ +T+IE GIDV +A+ IIIE A+ GLAQLH Sbjct: 843 VAVAHGQMRERELEQVMQQFYHKDYNVLVCSTIIETGIDVPNANTIIIERADKLGLAQLH 902 Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632 QLRGRVGR + LL L ++ RL ++ GF++A EDL+ R GE Sbjct: 903 QLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGE 962 Query: 633 ILGIKQSG 640 +LG +QSG Sbjct: 963 LLGEQQSG 970 >gi|109898045|ref|YP_661300.1| transcription-repair coupling factor [Pseudoalteromonas atlantica T6c] gi|109700326|gb|ABG40246.1| transcription-repair coupling factor [Pseudoalteromonas atlantica T6c] Length = 1160 Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 146/384 (38%), Positives = 214/384 (55%), Gaps = 15/384 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q+ AI ++QDM N M R++ GDVG GKT VA+ A A G Sbjct: 602 QAFSDSFPFEETLDQQQAINAVIQDMGSSNAMDRLVCGDVGFGKTEVAMRAAFIAANQGK 661 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P +LAQQHYE K + +E+++ ++ + + G+ I++GT Sbjct: 662 QVAILVPTTLLAQQHYENFKDRFADWPFKIEVMSRFGSAKDQKGVMAGLDDGKVDIVVGT 721 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L LVI+DE+HRFGV+Q+ K + +L +TATPIPRTL + G Sbjct: 722 HKLLQSDVKFDDLGLVIIDEEHRFGVRQKEKFKALRSDVDILTLTATPIPRTLNMALSGM 781 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D+S I PA R IKT + R E+I E + + G + Y++ ++ +S R Sbjct: 782 RDLSIIATPPAKRLAIKTFV--NQRSKELIREAIMREILRGGQVYFLHNEV----DSIER 835 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 + E + E + IAI HG+M + + E VM F + +L+ TT+IE GIDV A+ Sbjct: 836 TADEIAEMVPE---ARIAIGHGQMRERELEKVMGDFYHQRHNVLVCTTIIETGIDVPSAN 892 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED--- 616 II++ A+H GLAQLHQLRGRVGR + LL HP ++K++ RL + + ED Sbjct: 893 TIIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAKKRLDAISSLEDLGA 952 Query: 617 GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG Q+G Sbjct: 953 GFALATHDLEIRGAGELLGDDQTG 976 >gi|148548800|ref|YP_001268902.1| transcription-repair coupling factor [Pseudomonas putida F1] gi|148512858|gb|ABQ79718.1| transcription-repair coupling factor [Pseudomonas putida F1] Length = 1149 Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 143/380 (37%), Positives = 211/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q++AI+ + DM M R++ GDVG GKT VA+ A AV +G Q ++ Sbjct: 598 GFPFEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVL 657 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A +A G+ I+IGTH L Q Sbjct: 658 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQ 717 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D +++ L L I+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 718 DDVRFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSI 777 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R ++T ++ N+ V E L L G + Y++ ++ EK ++ +V Sbjct: 778 IATPPARRLSVRTFVMEQNK-STVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 836 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + I I HG+M + + E VM F + +L+A+T+IE GIDV A+ I+I Sbjct: 837 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVI 887 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL +S ++ RL + NT+D GF++ Sbjct: 888 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVL 947 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 948 ATNDLEIRGAGELLGEGQSG 967 >gi|313499733|gb|ADR61099.1| Mfd [Pseudomonas putida BIRD-1] Length = 1141 Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 143/380 (37%), Positives = 211/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q++AI+ + DM M R++ GDVG GKT VA+ A AV +G Q ++ Sbjct: 590 GFPFEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVL 649 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A +A G+ I+IGTH L Q Sbjct: 650 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQ 709 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D +++ L L I+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 710 DDVRFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSI 769 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I PA R ++T ++ N+ V E L L G + Y++ ++ EK ++ +V Sbjct: 770 IATPPARRLSVRTFVMEQNK-STVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 828 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + I I HG+M + + E VM F + +L+A+T+IE GIDV A+ I+I Sbjct: 829 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVI 879 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GFLI 620 E A+ FGLAQLHQLRGRVGR + LL +S ++ RL + NT+D GF++ Sbjct: 880 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVL 939 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 940 ATNDLEIRGAGELLGEGQSG 959 >gi|172087806|ref|YP_206418.2| transcription-repair coupling factor [Vibrio fischeri ES114] gi|197337336|ref|YP_002158058.1| transcription-repair coupling factor [Vibrio fischeri MJ11] gi|171902389|gb|AAW87530.2| transcription-repair coupling factor [Vibrio fischeri ES114] gi|197314588|gb|ACH64037.1| transcription-repair coupling factor [Vibrio fischeri MJ11] Length = 1151 Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 147/381 (38%), Positives = 212/381 (55%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + PF T Q+ AI +L DM Q M R++ GDVG GKT VA+ A A Q ++ Sbjct: 600 SFPFEETHDQDIAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFLATHNEKQVAVL 659 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ +++ L A G+ I+IGTH L Q Sbjct: 660 VPTTLLAQQHFENFRDRFANFPIRVEVLSRFKSAKEQKEILAATAEGKVDILIGTHKLLQ 719 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 DSI++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 720 DSIKFDDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 779 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVV 504 I PA R IKT + + D+VI+ + +L E G + Y + ++ ++ Sbjct: 780 IATPPARRLAIKTFV--REKADDVIK--EAILREIKRGGQVYVLHNNVD-----TIQNAA 830 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 E L + + + HG+M + + E +M F + +L+ TT+IE GIDV A+ II Sbjct: 831 EEIEKLIPE--ARVTLAHGQMRERELEKIMGDFYHQRFNVLVCTTIIETGIDVPTANTII 888 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GFL 619 ++ A+ GLAQLHQLRGRVGR + LL HP LSK++ RL + + ED GF Sbjct: 889 MDRADKLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKALSKDARKRLDAIASLEDLGAGFT 948 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG QSG Sbjct: 949 LATHDLEIRGAGELLGDGQSG 969 >gi|15598198|ref|NP_251692.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa PAO1] gi|218890799|ref|YP_002439663.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa LESB58] gi|9949103|gb|AAG06390.1|AE004725_3 transcription-repair coupling protein Mfd [Pseudomonas aeruginosa PAO1] gi|218771022|emb|CAW26787.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa LESB58] Length = 1148 Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 142/381 (37%), Positives = 214/381 (56%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q+SAI+ ++ DM M R++ GDVG GKT VA+ A AV +G Q ++ Sbjct: 597 GFPFEETPDQQSAIEAVVADMLAPRPMDRLVCGDVGFGKTEVAMRAAFVAVHSGKQVAVL 656 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A +A G+ I+IGTH L Q Sbjct: 657 VPTTLLAQQHYNSFRDRFADWPVSVEVMSRFKSAKEVENAARLLAEGKIDILIGTHKLLQ 716 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + +++ L LV++DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 717 EDVKFANLGLVVIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 776 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504 I PA R ++T + + + + VI E L L G + Y++ +++ EK + +V Sbjct: 777 IATPPARRLSVRTFV--MEQQNAVIKEALLRELLRGGQVYYLHNEVKTIEKCARDLAELV 834 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + I I HG+M + + E VM F + +L+A+T+IE GIDV A+ I+ Sbjct: 835 PE---------ARIGIGHGQMHERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIL 885 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFL 619 IE A+ FGLAQLHQLRGRVGR + LL P ++ ++ RL + N +D GF+ Sbjct: 886 IERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRRQMTPDAEKRLEAIANAQDLGAGFV 945 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG QSG Sbjct: 946 LATHDLEIRGAGELLGDGQSG 966 >gi|296388503|ref|ZP_06877978.1| transcription-repair coupling factor [Pseudomonas aeruginosa PAb1] Length = 1148 Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 142/381 (37%), Positives = 214/381 (56%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q+SAI+ ++ DM M R++ GDVG GKT VA+ A AV +G Q ++ Sbjct: 597 GFPFEETPDQQSAIEAVVADMLAPRPMDRLVCGDVGFGKTEVAMRAAFVAVHSGKQVAVL 656 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A +A G+ I+IGTH L Q Sbjct: 657 VPTTLLAQQHYNSFRDRFADWPVSVEVMSRFKSAKEVENAARLLAEGKIDILIGTHKLLQ 716 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + +++ L LV++DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 717 EDVKFANLGLVVIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 776 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504 I PA R ++T + + + + VI E L L G + Y++ +++ EK + +V Sbjct: 777 IATPPARRLSVRTFV--MEQQNAVIKEALLRELLRGGQVYYLHNEVKTIEKCARDLAELV 834 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + I I HG+M + + E VM F + +L+A+T+IE GIDV A+ I+ Sbjct: 835 PE---------ARIGIGHGQMHERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIL 885 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFL 619 IE A+ FGLAQLHQLRGRVGR + LL P ++ ++ RL + N +D GF+ Sbjct: 886 IERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRRQMTPDAEKRLEAIANAQDLGAGFV 945 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG QSG Sbjct: 946 LATHDLEIRGAGELLGDGQSG 966 >gi|116051004|ref|YP_790170.1| transcription-repair coupling factor [Pseudomonas aeruginosa UCBPP-PA14] gi|313108292|ref|ZP_07794324.1| transcription-repair coupling factor [Pseudomonas aeruginosa 39016] gi|115586225|gb|ABJ12240.1| transcription-repair coupling factor [Pseudomonas aeruginosa UCBPP-PA14] gi|310880826|gb|EFQ39420.1| transcription-repair coupling factor [Pseudomonas aeruginosa 39016] Length = 1148 Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 142/381 (37%), Positives = 214/381 (56%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q+SAI+ ++ DM M R++ GDVG GKT VA+ A AV +G Q ++ Sbjct: 597 GFPFEETPDQQSAIEAVVADMLAPRPMDRLVCGDVGFGKTEVAMRAAFVAVHSGKQVAVL 656 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A +A G+ I+IGTH L Q Sbjct: 657 VPTTLLAQQHYNSFRDRFADWPVSVEVMSRFKSAKEVENAARLLAEGKIDILIGTHKLLQ 716 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + +++ L LV++DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 717 EDVKFANLGLVVIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 776 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504 I PA R ++T + + + + VI E L L G + Y++ +++ EK + +V Sbjct: 777 IATPPARRLSVRTFV--MEQQNAVIKEALLRELLRGGQVYYLHNEVKTIEKCARDLAELV 834 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + I I HG+M + + E VM F + +L+A+T+IE GIDV A+ I+ Sbjct: 835 PE---------ARIGIGHGQMHERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIL 885 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFL 619 IE A+ FGLAQLHQLRGRVGR + LL P ++ ++ RL + N +D GF+ Sbjct: 886 IERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRRQMTPDAEKRLEAIANAQDLGAGFV 945 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG QSG Sbjct: 946 LATHDLEIRGAGELLGDGQSG 966 >gi|107102552|ref|ZP_01366470.1| hypothetical protein PaerPA_01003616 [Pseudomonas aeruginosa PACS2] Length = 1148 Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 142/381 (37%), Positives = 214/381 (56%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q+SAI+ ++ DM M R++ GDVG GKT VA+ A AV +G Q ++ Sbjct: 597 GFPFEETPDQQSAIEAVVADMLAPRPMDRLVCGDVGFGKTEVAMRAAFVAVHSGKQVAVL 656 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A +A G+ I+IGTH L Q Sbjct: 657 VPTTLLAQQHYNSFRDRFADWPVSVEVMSRFKSAKEVENAARLLAEGKIDILIGTHKLLQ 716 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + +++ L LV++DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 717 EDVKFANLGLVVIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 776 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504 I PA R ++T + + + + VI E L L G + Y++ +++ EK + +V Sbjct: 777 IATPPARRLSVRTFV--MEQQNAVIKEALLRELLRGGQVYYLHNEVKTIEKCARDLAELV 834 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + I I HG+M + + E VM F + +L+A+T+IE GIDV A+ I+ Sbjct: 835 PE---------ARIGIGHGQMHERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIL 885 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFL 619 IE A+ FGLAQLHQLRGRVGR + LL P ++ ++ RL + N +D GF+ Sbjct: 886 IERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRRQMTPDAEKRLEAIANAQDLGAGFV 945 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG QSG Sbjct: 946 LATHDLEIRGAGELLGDGQSG 966 >gi|259501958|ref|ZP_05744860.1| transcription-repair coupling factor [Lactobacillus antri DSM 16041] gi|259170135|gb|EEW54630.1| transcription-repair coupling factor [Lactobacillus antri DSM 16041] Length = 1185 Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 148/455 (32%), Positives = 245/455 (53%), Gaps = 23/455 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R + E +A ++ L +++ K P + + + N P++ T+ Q Sbjct: 578 EWAKTKRRVASKVEDIADELVDLYAKREAAKGYAFP--ADDYLQAQFDANFPYTETRDQL 635 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +IK++ +DM + M R+L GDVG GKT VA+ A+ AV G Q + P +LAQQH+ Sbjct: 636 RSIKEVKRDMEKPRPMDRLLVGDVGYGKTEVAMRAIFKAVTGGKQVAFLVPTTVLAQQHF 695 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + K + + +++ ++ +A G I++GTH + +Q+ L LV Sbjct: 696 DTLSKRFAGFPVKIALMSRFKTNQELKETDAGLAAGSIDIVVGTHRILSKDVQFRDLGLV 755 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + +L + VL +TATPIPRTL ++ LG D+S + PAGR PI Sbjct: 756 IVDEEQRFGVKHKERLKELKNNVDVLTLTATPIPRTLNMSMLGVRDLSVLETPPAGRFPI 815 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T ++ N I + I R L+ G + Y++ ++ S+ V + +L + Sbjct: 816 QTYVMEQNGGAIRDGITR---ELNRGGQVYYLHNRV-----SDIEETVMKLQALVPD--A 865 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 I IHG+M + + E+V+ F G +L+ T++IE G+D+ + + + +ENA+H GLAQL Sbjct: 866 RIGYIHGKMGENELETVLYDFIQGNYDVLVTTSIIETGVDIPNVNTLFVENADHLGLAQL 925 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +Q+RGR+GR ++ +Y P L++ RL+ +++ TE GF IA DL R G Sbjct: 926 YQIRGRIGRSNRVAYAYFMYQPNKVLTELGEKRLAAIRDFTELGSGFKIAMRDLAIRGAG 985 Query: 632 EILGIKQSGMPKFLIAQPELHDSLLE--IARKDAK 664 ILG +Q G + +L+ S+L +ARK K Sbjct: 986 NILGKQQHGFIDSV--GYDLYSSMLNEAVARKQGK 1018 >gi|125975114|ref|YP_001039024.1| transcription-repair coupling factor [Clostridium thermocellum ATCC 27405] gi|125715339|gb|ABN53831.1| transcription-repair coupling factor [Clostridium thermocellum ATCC 27405] Length = 1178 Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 137/378 (36%), Positives = 221/378 (58%), Gaps = 17/378 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q I++I +DM M R+L GDVG GKT VA+ A+ AV G Q + P Sbjct: 629 PYQETEDQLRCIEEIKRDMESPRPMDRLLCGDVGYGKTEVAMRAVFKAVMDGKQVAYLVP 688 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY K+ ++ I VE+++ QA +++ L+ + G ++IGTH L Q Sbjct: 689 TTVLAQQHYNTFKERMKDFPITVEVLSRFRTQAEQKRILKDVKAGMVDVLIGTHRLLQKD 748 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+++DE+ RFGV + K+ + T VL +TATPIPRTL ++ +G DIS I Sbjct: 749 VCFKDLGLLVIDEEQRFGVTHKEKIKRMKTNIDVLTLTATPIPRTLHMSLVGIRDISTIE 808 Query: 450 EKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 E P R P++T ++ N DEV+ + + +S G + +++ ++ R++ ++ Sbjct: 809 EPPEERYPVQTYVMEYN--DEVVRDAINREMSRGGQVFYLYNRV--------RAINQKAA 858 Query: 509 SLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + + + +AI HG+M++ + E++M F NG +L+ TT+IE G+D+ + + II+E+ Sbjct: 859 EIQKLVPEARVAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVNTIIVED 918 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622 A+ GLAQL+QLRGRVGR ++ + Y LS+ + RL +K TE GF IA Sbjct: 919 ADKMGLAQLYQLRGRVGRSNRLAYAYITYKKDKVLSEIAEKRLQAIKEFTEFGSGFKIAM 978 Query: 623 EDLKQRKEGEILGIKQSG 640 DL+ R G +LG +Q G Sbjct: 979 RDLQLRGAGNLLGPQQHG 996 >gi|332851753|ref|ZP_08433678.1| transcription-repair coupling factor [Acinetobacter baumannii 6013150] gi|332729760|gb|EGJ61095.1| transcription-repair coupling factor [Acinetobacter baumannii 6013150] Length = 1153 Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 148/430 (34%), Positives = 230/430 (53%), Gaps = 23/430 (5%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W+ R+ L +A ++ + R+Q K G ++ + + + T Q + Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFAFELDQSLYMQFASGFAYEETLDQAN 612 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI+ L DM Q M R++ GDVG GKT VA+ A AV+ G Q ++ P +LAQQHYE Sbjct: 613 AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 K + + +E+++ K +E +A+G+ I++GTH L Q+++Q+ L L++ Sbjct: 673 SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMV 732 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 VDE+HRFGV+ + ++ +L +TATPIPRTL + G D+S I PA R +K Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792 Query: 460 TVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515 T + I E I R L G + Y++ ++E E+ N R +V Sbjct: 793 TFVQEHTDASIKEAILR---ELLRGGQVYFLHNEVETIERAAENIRVLVPE--------- 840 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A+ HG+M + + E VM F + +L+ +T+IE GIDV +A+ I+IE A+ GLAQ Sbjct: 841 ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ 900 Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630 LHQLRGRVGR + LL L ++ RL ++ GF++A EDL+ R Sbjct: 901 LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA 960 Query: 631 GEILGIKQSG 640 GE+LG +QSG Sbjct: 961 GELLGEQQSG 970 >gi|148245051|ref|YP_001219745.1| transcription-repair coupling factor [Candidatus Vesicomyosocius okutanii HA] gi|146326878|dbj|BAF62021.1| transcription-repair coupling factor [Candidatus Vesicomyosocius okutanii HA] Length = 1145 Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 140/382 (36%), Positives = 216/382 (56%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 N PF T Q + ++L DM + M R++ GDVG GKT +A+ A AV+AG Q I+ Sbjct: 598 NFPFEETPDQIKTMNEVLADMQSQQPMDRLVCGDVGFGKTEIAMRAAFLAVKAGKQVAIL 657 Query: 328 APIGILAQQHY-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 P +L+ QHY FI ++T + I + P+ ++ +E++ G IIIGTH + Sbjct: 658 VPTTLLSNQHYRSFIDRFTNDPTKIATLSRFQTPK-EQKIIIEQLKQGTIDIIIGTHKII 716 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI-DI 445 Q++I+Y L L+I+DE+HRFGV+Q+ L + +L MTATPIPRTL + +LG + ++ Sbjct: 717 QNNIKYKNLSLIIIDEEHRFGVKQKEALKKLRGQSDILTMTATPIPRTLNM-ALGSLREL 775 Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSV 503 S I PA R I+T + + D + E + + G + + + I + N + + Sbjct: 776 SIIATPPAKRSTIQTFVQEWHN-DNIKEAITREIHRGGQVFILHNDINSIDNMAENLKQI 834 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + + I I HG++ + E +M F + +L+ TT+IE GID+ +A+ I Sbjct: 835 IPKL---------QIRIAHGKIPTRELEQIMSDFYHARFHILVCTTIIETGIDIPNANTI 885 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GF 618 II NA++FGLAQLHQLRGRVGR + L+ H LSK + RL V+K+ + GF Sbjct: 886 IINNAQNFGLAQLHQLRGRVGRSHHRAYAYLIVKSHLSLSKTAKDRLDVIKSLTELGSGF 945 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 ++A DL+ R G++LG QSG Sbjct: 946 MLANHDLEIRGAGDLLGDNQSG 967 >gi|322373973|ref|ZP_08048507.1| transcription-repair coupling factor [Streptococcus sp. C150] gi|321276939|gb|EFX54010.1| transcription-repair coupling factor [Streptococcus sp. C150] Length = 1168 Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 215/382 (56%), Gaps = 19/382 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + ++ T Q +IK+I DM M R+L GDVG GKT VA+ A AV G Q I+ Sbjct: 609 DFAYAETVDQLRSIKEIKADMESDKPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAIL 668 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LA QHY K+ +N + V+ ++ + + + +E +A G+ IIIGTH L Sbjct: 669 VPTTVLAHQHYLNFKERFENHAVEVDELSRFRSKKEQNETIENLAKGRIDIIIGTHRLLS 728 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++ L L+++DE+ RFGV+ + KL + VL +TATPIPRTL ++ LG D+S Sbjct: 729 KDVEFSDLGLLVIDEEQRFGVKHKEKLKELKAKVDVLTLTATPIPRTLHMSMLGIRDLSI 788 Query: 448 ITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E + R + G + ++I ++E ++ + Sbjct: 789 IETAPTNRYPVQTYVMETNPGLIREAVLR---EMDRGGQVFYIYNRVE--------TIDQ 837 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + + LHE + I +HG+MS+ E+ + F NG +L+ATT+IE GID+ + + + Sbjct: 838 KVSELHELVPEARIGFVHGQMSESMLENTLLDFLNGDYDVLVATTIIETGIDISNVNTLF 897 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFL 619 IENA+H GL+ L+QLRGRVGR I+ L+Y P L++ S RL +K TE GF Sbjct: 898 IENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEVSEKRLDAIKGFTELGSGFK 957 Query: 620 IAEEDLKQRKEGEILGIKQSGM 641 IA DL R G ILG QSG Sbjct: 958 IAMRDLSIRGAGNILGASQSGF 979 >gi|149195831|ref|ZP_01872888.1| Transcription-repair coupling factor, MFD (superfamily II helicase ) [Lentisphaera araneosa HTCC2155] gi|149141293|gb|EDM29689.1| Transcription-repair coupling factor, MFD (superfamily II helicase ) [Lentisphaera araneosa HTCC2155] Length = 1062 Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 143/410 (34%), Positives = 230/410 (56%), Gaps = 19/410 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q SAI+++ +DM + M R+L GDVG GKT VA+ A AV + Q I+ Sbjct: 522 SFPYEETPDQLSAIEEVKKDMERAKPMDRLLCGDVGFGKTEVAMRAAFKAVMSSHQVAIV 581 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+ + + I + ++ + + +++ L+ +A G+ I++GTH L Q Sbjct: 582 VPTTVLAQQHFHSFSQRMSDFPIKIATLSRFISKKDQKQVLKEMAEGEVDIVVGTHRLLQ 641 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I + KL L++VDE+ RFGV+ + L + +L M+ATPIPRTL L+ G D S Sbjct: 642 KDINFQKLGLLVVDEEQRFGVESKEALKRMRVNVDILSMSATPIPRTLYLSMTGLRDFST 701 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIE-RLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 I P RKP++T++ N DE+IE ++ L G + Y++ +++ + + Sbjct: 702 ILTAPHNRKPVRTIVTKEN--DEIIEVAIRRELERGGQVYYLHNRVKTIENVALK----- 754 Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 L F ++I I HG+M + + E VM+ F +G ++L+ TT+IE G+D+ +A+ ++I Sbjct: 755 ---LKRQFPEANILIGHGQMDEEELEMVMNEFTDGDGQILVCTTIIESGMDIRNANTMVI 811 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLI 620 + A+ FGL+ L+QLRGRVGR + C LL + N+ RLS L+ GF + Sbjct: 812 DRADRFGLSSLYQLRGRVGRDHRQAYCYLLMPRDEAIMDNAKERLSALRKHTHPGAGFKL 871 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670 A DL+ R G +LG +QSG EL+ LL+ + +D K + QD Sbjct: 872 AMRDLEIRGAGNMLGSQQSG--HIAAVGFELYCQLLKKSVEDLKGSIHQD 919 >gi|313673697|ref|YP_004051808.1| transcription-repair coupling factor [Calditerrivibrio nitroreducens DSM 19672] gi|312940453|gb|ADR19645.1| transcription-repair coupling factor [Calditerrivibrio nitroreducens DSM 19672] Length = 1098 Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 150/448 (33%), Positives = 238/448 (53%), Gaps = 28/448 (6%) Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK 260 +A N + N R K E + +++A D LL + + K ++G +G Sbjct: 504 DVAVKLNSLQNTRWKKLKEQAQKSAKKVAID--------LLKLYAERKAKLGFSFKDDGT 555 Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320 + I + + T+ Q +AI+D++ DM + M R++ GDVG GKT VA+ A + Sbjct: 556 FMKIIEDSFEYDETEDQINAIRDVIADMESEKAMDRLICGDVGFGKTEVAIRAACKCCAS 615 Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380 G Q ++AP IL +QH+E K+ N +E ++ + + L ++A+G+ III Sbjct: 616 GKQVALLAPTTILVKQHFETFKRRFSNLPFKIEYVSRFKSKKEINETLRKVANGEIDIII 675 Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440 GTH L + + ++ L L+I+DE+ RFGV + K+ + VL M+ATPIPRTL + Sbjct: 676 GTHRLLSNDVSFHDLGLLIIDEEQRFGVAHKEKIKNLKSNIDVLAMSATPIPRTLQFSLA 735 Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI---CPQIEEKKE 497 G DIS I P R P+ T I IN ++V + + L G + Y++ +IEEK Sbjct: 736 GIRDISIIETPPEERLPVLTNI--INNEEDVKKAIIHELKRGGQVYYLYNDLSKIEEKAY 793 Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557 S +S++ + +AI HG+M E +D+F +G +L+ +T+IE GID+ Sbjct: 794 S-IKSMLPE---------AEVAIAHGQMDPEKVEKTLDAFYDGKIDVLVCSTIIENGIDI 843 Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE 615 + + III+ A+ FGL+QL+QL+GRVGR C L LS + RL +++ Sbjct: 844 PNVNTIIIDGADKFGLSQLYQLKGRVGRSRVRGYCYLYIRNFNVLSTIAKKRLKIIQQMS 903 Query: 616 D---GFLIAEEDLKQRKEGEILGIKQSG 640 + GF IA DL+ R GE+LG +QSG Sbjct: 904 ELGSGFKIASYDLQLRGAGELLGAEQSG 931 >gi|322515787|ref|ZP_08068732.1| exopolyphosphatase [Streptococcus vestibularis ATCC 49124] gi|322125749|gb|EFX97067.1| exopolyphosphatase [Streptococcus vestibularis ATCC 49124] Length = 1195 Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 143/379 (37%), Positives = 215/379 (56%), Gaps = 19/379 (5%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 ++ T Q +IK++ DM M R+L GDVG GKT VA+ A AV G Q I+ P Sbjct: 612 YAETVDQLRSIKEVKADMESDKPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPT 671 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA QHY K+ +N + V+ ++ + + + +E +A G+ IIIGTH L + Sbjct: 672 TVLAHQHYLNFKERFENHAVEVDELSRFRSKKEQNETIENLAKGRIDIIIGTHRLLSKDV 731 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L L+++DE+ RFGV+ + KL + VL +TATPIPRTL ++ LG D+S I Sbjct: 732 KFSDLGLLVIDEEQRFGVKHKEKLKELKAKVDVLTLTATPIPRTLHMSMLGIRDLSIIET 791 Query: 451 KPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R P++T ++ N I E I R + G + ++I ++E ++ ++ + Sbjct: 792 APTNRYPVQTYVMETNPGLIREAILR---EMDRGGQIFYIYNRVE--------TIDQKVS 840 Query: 509 SLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 LHE + I +HG+MS++ E+ + F NG +L+ATT+IE GID+ + + + IEN Sbjct: 841 ELHEIVPEARIGFVHGQMSEVMLENTLLDFLNGDYDVLVATTIIETGIDISNVNTLFIEN 900 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622 A+H GL+ L+QLRGRVGR I+ L+Y P L++ S RL +K TE GF IA Sbjct: 901 ADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEVSEKRLDAIKGFTELGSGFKIAM 960 Query: 623 EDLKQRKEGEILGIKQSGM 641 DL R G ILG QSG Sbjct: 961 RDLSIRGAGNILGSSQSGF 979 >gi|184157970|ref|YP_001846309.1| transcription-repair coupling factor [Acinetobacter baumannii ACICU] gi|332874430|ref|ZP_08442333.1| transcription-repair coupling factor [Acinetobacter baumannii 6014059] gi|183209564|gb|ACC56962.1| Transcription-repair coupling factor (superfamily II helicase) [Acinetobacter baumannii ACICU] gi|322508289|gb|ADX03743.1| Transcription-repair coupling protein [Acinetobacter baumannii 1656-2] gi|332737274|gb|EGJ68198.1| transcription-repair coupling factor [Acinetobacter baumannii 6014059] Length = 1153 Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 148/430 (34%), Positives = 230/430 (53%), Gaps = 23/430 (5%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W+ R+ L +A ++ + R+Q K G ++ + + + T Q + Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFAFELDQSLYMQFASGFAYEETLDQAN 612 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI+ L DM Q M R++ GDVG GKT VA+ A AV+ G Q ++ P +LAQQHYE Sbjct: 613 AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 K + + +E+++ K +E +A+G+ I++GTH L Q+++Q+ L L++ Sbjct: 673 SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMV 732 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 VDE+HRFGV+ + ++ +L +TATPIPRTL + G D+S I PA R +K Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792 Query: 460 TVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515 T + I E I R L G + Y++ ++E E+ N R +V Sbjct: 793 TFVQEHTDASIKEAILR---ELLRGGQVYFLHNEVETIERAAENIRVLVPE--------- 840 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A+ HG+M + + E VM F + +L+ +T+IE GIDV +A+ I+IE A+ GLAQ Sbjct: 841 ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ 900 Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630 LHQLRGRVGR + LL L ++ RL ++ GF++A EDL+ R Sbjct: 901 LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA 960 Query: 631 GEILGIKQSG 640 GE+LG +QSG Sbjct: 961 GELLGEQQSG 970 >gi|17232707|ref|NP_489255.1| transcriptional-repair coupling factor [Nostoc sp. PCC 7120] gi|17134354|dbj|BAB76914.1| transcriptional-repair coupling factor [Nostoc sp. PCC 7120] Length = 1185 Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 137/381 (35%), Positives = 216/381 (56%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q A++D+ +DM M R++ GDVG GKT VA+ A+ AV +G Q ++ Sbjct: 631 SFPYQATTDQLKAVQDVKRDMESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTSGKQVALL 690 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 AP IL QQHY +K+ + V ++ RR +R+A G+ I++GTH L Sbjct: 691 APTTILTQQHYHTLKERFSPYPVNVGLLNRFRTAEERRNIQKRLATGELDIVVGTHQLLG 750 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 S+ + L L+++DE+ RFGV Q+ K+ T VL ++ATPIPRTL ++ G ++S Sbjct: 751 KSVSFKDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSLSGIREMSL 810 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 IT P R+PIKT + P N + V ++ L G + +++ P+++ E+ +N R +V Sbjct: 811 ITTPPPTRRPIKTHLSPRN-PESVRSAIRQELDRGGQVFYVVPRVDGIEEITANLREMVP 869 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + AI HG+M + + ES M +F NG +L+ TT+IE G+D+ + I+I Sbjct: 870 ---------GARFAIAHGQMDESELESTMLTFSNGDADILVCTTIIESGLDIPRVNTILI 920 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLK---NTEDGFL 619 E+A FGL+QL+QLRGRVGR I + L++P LS + RL ++ G+ Sbjct: 921 EDAHRFGLSQLYQLRGRVGRA-GIQAHAWLFYPKQRELSDAARQRLRAIQEFTQLGSGYQ 979 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A D++ R G +LG +QSG Sbjct: 980 LAMRDMEIRGVGNLLGAEQSG 1000 >gi|260655930|ref|ZP_05861399.1| putative transcription-repair coupling factor [Jonquetella anthropi E3_33 E1] gi|260629546|gb|EEX47740.1| putative transcription-repair coupling factor [Jonquetella anthropi E3_33 E1] Length = 1023 Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 143/390 (36%), Positives = 220/390 (56%), Gaps = 18/390 (4%) Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318 G++ ++ P+ T+ Q AI++I DM + M R+L GDVG GKT VAL A AV Sbjct: 482 GEMRSLFDQSFPYRETRDQLKAIREIDSDMERPFPMDRLLVGDVGYGKTEVALRAAVKAV 541 Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378 E G QA +AP +LAQQHY + I +++ + A ++K +A G + Sbjct: 542 ENGLQAAFVAPTTVLAQQHYRTCLARIGDLPIRTALLSRMVTPAGQKKIRTGLAEGTIDL 601 Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLV 436 ++GTH+LF+ ++++ L L+I+DE+HRFGV + L KAT P VL ++ATPIPR+L Sbjct: 602 VVGTHSLFRTALEFKNLGLLILDEEHRFGVAHKESL--KATHPGVDVLSLSATPIPRSLS 659 Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496 + G DIS +T PA R I TV P + V + L L G + Y++ +IE+ + Sbjct: 660 MAWRGIKDISLLTTPPASRGRIYTVTGPWSE-SLVSDALARELQRGGQVYYLHNRIEDIQ 718 Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556 + +R V +RF + +A+ HG+M+ + E VM+ F G ++LI TT++E G+D Sbjct: 719 QVAWR-VSQRFPD------APLAVAHGQMNQRELEDVMERFYRGAVQILICTTIVESGLD 771 Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY---HPPLSKNSYTRLSVLKN 613 V A+ +++++ GLAQ+HQ+RGR+GR +E LY L ++ RL L Sbjct: 772 VARANTLVVDDVRWLGLAQMHQIRGRIGRRQEDGYAYFLYPGDDASLPGQTWERLEALGA 831 Query: 614 TED---GFLIAEEDLKQRKEGEILGIKQSG 640 E G+ +A+ DL+ R GEILG Q G Sbjct: 832 MESSGGGYRLAQRDLEIRGAGEILGTSQHG 861 >gi|257457388|ref|ZP_05622559.1| transcription-repair coupling factor [Treponema vincentii ATCC 35580] gi|257445310|gb|EEV20382.1| transcription-repair coupling factor [Treponema vincentii ATCC 35580] Length = 1154 Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 137/376 (36%), Positives = 226/376 (60%), Gaps = 13/376 (3%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q + I D+ DM + M R++ GDVG GKT +A+ A AV G QA +AP Sbjct: 612 PYEETEDQLTCIADVKTDMEKPVPMDRLICGDVGYGKTEIAMRAAFKAVMNGKQAAFLAP 671 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILA+QH+E ++ Q + + ++ + +A ++K L+++ +G+ I+IGTH + Q Sbjct: 672 TTILAEQHFETFQERFQKFPVKLARLSRFVSKAEQKKVLDQLKNGELDIVIGTHRVIQKD 731 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +Q+ L L+IVDE+ RFGV+ + +L Q T L ++ATPIPRTL ++ L D+S +T Sbjct: 732 VQFKDLGLMIVDEEQRFGVKDKERLKQMKTNIDCLSLSATPIPRTLHISLLKIRDMSLLT 791 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P R+P++TVI P + +++ + ++ + G + +++ ++E +E+ + + Sbjct: 792 TPPQNRRPVETVISPFDP-EKIAQAIRFEVDRGGQVFYLHNRVESLEETRY-----KIQQ 845 Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 L IA HG+MS + E + F G +LIATT+IE GID+ +A+ III+ A+ Sbjct: 846 LIPEVLIDIA--HGQMSATELEDIFRRFNMGGFHVLIATTIIENGIDIPNANTIIIDRAD 903 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEED 624 +G++QL+QLRGRVGR + + LLY + LS+ + RL V+ + TE GF IA +D Sbjct: 904 MYGVSQLYQLRGRVGRSDRKAYAYLLYPENKALSEVAMKRLQVISDFTELGSGFKIAMKD 963 Query: 625 LKQRKEGEILGIKQSG 640 ++ R G +LG +QSG Sbjct: 964 MEIRGAGNLLGKEQSG 979 >gi|84386598|ref|ZP_00989624.1| transcription-repair coupling factor [Vibrio splendidus 12B01] gi|84378404|gb|EAP95261.1| transcription-repair coupling factor [Vibrio splendidus 12B01] Length = 1153 Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 135/382 (35%), Positives = 211/382 (55%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI ++ DM Q M R++ GDVG GKT VA+ A + Q ++ Sbjct: 599 GFPFEETDDQAMAINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVCTDNSKQVAVL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ ++ ++ + G+ I++GTH L Sbjct: 659 VPTTLLAQQHFENFRDRFANQPIRVEVLSRFKSAKEQKLIMQDVTDGKVDILVGTHKLLS 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++ L L++VDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 719 SDLKFKDLGLLVVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503 I PA R IKT + D+ I R V+ + G + Y++ Q++ EK + + + Sbjct: 779 IATPPARRLAIKTF---VRESDDAIVREAVLREIMRGGQVYFLHNQVDTIEKTAESLQKL 835 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + + + + HG+M + + E +M+ F + LL+ TT+IE GIDV A+ I Sbjct: 836 IPE---------ARVTVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTI 886 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GF 618 +++ A++ GLAQLHQLRGRVGR + LL PP ++K++ RL + + ED GF Sbjct: 887 LMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAMTKDAVKRLDAIASLEDLGAGF 946 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG +QSG Sbjct: 947 TLATHDLEIRGAGELLGDEQSG 968 >gi|260555151|ref|ZP_05827372.1| transcription-repair coupling factor [Acinetobacter baumannii ATCC 19606] gi|260411693|gb|EEX04990.1| transcription-repair coupling factor [Acinetobacter baumannii ATCC 19606] Length = 1153 Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 148/430 (34%), Positives = 230/430 (53%), Gaps = 23/430 (5%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W+ R+ L +A ++ + R+Q K G ++ + + + T Q + Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFAFELDQSLYMQFASGFAYEETLDQAN 612 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI+ L DM Q M R++ GDVG GKT VA+ A AV+ G Q ++ P +LAQQHYE Sbjct: 613 AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 K + + +E+++ K +E +A+G+ I++GTH L Q+++Q+ L L++ Sbjct: 673 SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMV 732 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 VDE+HRFGV+ + ++ +L +TATPIPRTL + G D+S I PA R +K Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792 Query: 460 TVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515 T + I E I R L G + Y++ ++E E+ N R +V Sbjct: 793 TFVQEHTDASIKEAILR---ELLRGGQVYFLHNEVETIERAAENIRVLVPE--------- 840 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A+ HG+M + + E VM F + +L+ +T+IE GIDV +A+ I+IE A+ GLAQ Sbjct: 841 ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ 900 Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630 LHQLRGRVGR + LL L ++ RL ++ GF++A EDL+ R Sbjct: 901 LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA 960 Query: 631 GEILGIKQSG 640 GE+LG +QSG Sbjct: 961 GELLGEQQSG 970 >gi|323517915|gb|ADX92296.1| transcription-repair coupling factor [Acinetobacter baumannii TCDC-AB0715] Length = 1153 Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 148/430 (34%), Positives = 230/430 (53%), Gaps = 23/430 (5%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W+ R+ L +A ++ + R+Q K G ++ + + + T Q + Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFAFELDQSLYMQFASGFAYEETLDQAN 612 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI+ L DM Q M R++ GDVG GKT VA+ A AV+ G Q ++ P +LAQQHYE Sbjct: 613 AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 K + + +E+++ K +E +A+G+ I++GTH L Q+++Q+ L L++ Sbjct: 673 SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMV 732 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 VDE+HRFGV+ + ++ +L +TATPIPRTL + G D+S I PA R +K Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792 Query: 460 TVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515 T + I E I R L G + Y++ ++E E+ N R +V Sbjct: 793 TFVQEHTDASIKEAILR---ELLRGGQVYFLHNEVETIERAAENIRVLVPE--------- 840 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A+ HG+M + + E VM F + +L+ +T+IE GIDV +A+ I+IE A+ GLAQ Sbjct: 841 ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ 900 Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630 LHQLRGRVGR + LL L ++ RL ++ GF++A EDL+ R Sbjct: 901 LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA 960 Query: 631 GEILGIKQSG 640 GE+LG +QSG Sbjct: 961 GELLGEQQSG 970 >gi|239502151|ref|ZP_04661461.1| transcription-repair coupling factor [Acinetobacter baumannii AB900] Length = 1153 Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 148/430 (34%), Positives = 230/430 (53%), Gaps = 23/430 (5%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W+ R+ L +A ++ + R+Q K G ++ + + + T Q + Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFAFELDQSLYMQFASGFAYEETLDQAN 612 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI+ L DM Q M R++ GDVG GKT VA+ A AV+ G Q ++ P +LAQQHYE Sbjct: 613 AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 K + + +E+++ K +E +A+G+ I++GTH L Q+++Q+ L L++ Sbjct: 673 SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMV 732 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 VDE+HRFGV+ + ++ +L +TATPIPRTL + G D+S I PA R +K Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792 Query: 460 TVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515 T + I E I R L G + Y++ ++E E+ N R +V Sbjct: 793 TFVQEHTDASIKEAILR---ELLRGGQVYFLHNEVETIERAAENIRVLVPE--------- 840 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A+ HG+M + + E VM F + +L+ +T+IE GIDV +A+ I+IE A+ GLAQ Sbjct: 841 ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ 900 Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630 LHQLRGRVGR + LL L ++ RL ++ GF++A EDL+ R Sbjct: 901 LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA 960 Query: 631 GEILGIKQSG 640 GE+LG +QSG Sbjct: 961 GELLGEQQSG 970 >gi|169633480|ref|YP_001707216.1| transcription-repair coupling protein [Acinetobacter baumannii SDF] gi|169152272|emb|CAP01180.1| transcription-repair coupling protein [Acinetobacter baumannii] Length = 1153 Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 148/430 (34%), Positives = 230/430 (53%), Gaps = 23/430 (5%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W+ R+ L +A ++ + R+Q K G ++ + + + T Q + Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFAFELDQSLYMQFASGFAYEETLDQAN 612 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI+ L DM Q M R++ GDVG GKT VA+ A AV+ G Q ++ P +LAQQHYE Sbjct: 613 AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 K + + +E+++ K +E +A+G+ I++GTH L Q+++Q+ L L++ Sbjct: 673 SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMV 732 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 VDE+HRFGV+ + ++ +L +TATPIPRTL + G D+S I PA R +K Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792 Query: 460 TVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515 T + I E I R L G + Y++ ++E E+ N R +V Sbjct: 793 TFVQEHTDASIKEAILR---ELLRGGQVYFLHNEVETIERAAENIRVLVPE--------- 840 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A+ HG+M + + E VM F + +L+ +T+IE GIDV +A+ I+IE A+ GLAQ Sbjct: 841 ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ 900 Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630 LHQLRGRVGR + LL L ++ RL ++ GF++A EDL+ R Sbjct: 901 LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA 960 Query: 631 GEILGIKQSG 640 GE+LG +QSG Sbjct: 961 GELLGEQQSG 970 >gi|320334953|ref|YP_004171664.1| transcription factor CarD [Deinococcus maricopensis DSM 21211] gi|319756242|gb|ADV67999.1| transcription factor CarD [Deinococcus maricopensis DSM 21211] Length = 1042 Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 144/407 (35%), Positives = 219/407 (53%), Gaps = 41/407 (10%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+I N PF T Q +A+K+ +D+ + M R++ GDVG GKT VAL A V G Sbjct: 476 QQIEENFPFELTADQVTALKETYRDLEADHPMDRLIAGDVGFGKTEVALRAAHRVVGHGK 535 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P +LA+QH + +N + VE I+ L +A G+ +IIGT Sbjct: 536 QVAILVPTTLLAEQHTSTFVERFKNLPVRVEGISRFTSTRQANAILADLAQGKVDVIIGT 595 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLK----------------------LTQKATA 420 H L D IQ+ L L+IVDE+HRFGV Q+ K L + A A Sbjct: 596 HRLLSDDIQFKNLGLIIVDEEHRFGVNQKEKLKALQNLPELDKNGAPKKGKRALPEDAVA 655 Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV-- 478 VL ++ATPIPRTL ++ +G D+S I P GRKPI+TV+ P D + R +V Sbjct: 656 VDVLSLSATPIPRTLYMSMVGLRDMSSIQTPPKGRKPIQTVLAP---FDPMTVRNAIVSE 712 Query: 479 LSEGKKAYWICPQIEE--KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 + K ++I ++ + R++V + + + HG+M++ + E +M Sbjct: 713 IDRNGKVFYIHDRVASIGARSLYLRTLVPE---------ARVGVAHGQMNEEELEEIMLG 763 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F+ G +L+ATT++E G+D+ +A+ I+IE ++ GLAQL+QLRGRVGR + L Y Sbjct: 764 FEEGAFDVLLATTIVETGLDIPEANTILIERSDRLGLAQLYQLRGRVGRRSVDAYAYLFY 823 Query: 597 HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 P L++N+ RL + + +D G +AE+D++ R G ILG +Q G Sbjct: 824 PPRLTENASRRLWAIADLQDLGTGHKLAEKDMEIRGVGNILGEEQHG 870 >gi|167041981|gb|ABZ06718.1| putative TRCF domain protein [uncultured marine microorganism HF4000_141E02] Length = 1150 Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 149/377 (39%), Positives = 206/377 (54%), Gaps = 23/377 (6%) Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T+ Q I+D+L DM+ M R++ GDVG GKT VAL A G Q ++ P IL Sbjct: 608 TQDQAKVIEDVLDDMAASKSMDRLVCGDVGFGKTEVALRAAFTCAINGYQVALLVPTTIL 667 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 AQQH+E + I + I++ + + I G+A IIIGTHAL D + Y Sbjct: 668 AQQHFETFNERFSEWPIAINILSRLQTSKNNNQVRAGIEKGKADIIIGTHALLSDKVVYK 727 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI-DISKITEKP 452 L LVIVDE+HRFGV+ + KL L +TATPIPRTL + ++G++ DIS I P Sbjct: 728 NLGLVIVDEEHRFGVRHKEKLKALRKDVDYLALTATPIPRTLNM-AIGELKDISMIATPP 786 Query: 453 AGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508 GR P+KT I ++ I E +R +S G + ++ +I+ E R ++ Sbjct: 787 EGRIPVKTYISQWDKSLIHEACQR---EISRGGQVLFVHNRIDDIENMAETIRQIIP--- 840 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 S+ I HGRM + E VM F N +L+AT++IE G+D+ +A+ III A Sbjct: 841 ------VGSLEIAHGRMKERSLERVMMKFYNNEFDILLATSIIESGLDIPNANTIIINRA 894 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623 + FGLAQLHQLRGRVGR E S L+ L+ RL ++ ED GF++A Sbjct: 895 DRFGLAQLHQLRGRVGRSERQSYAYLMIPSKHTLTNEGRQRLEAIEAIEDLGVGFILATH 954 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R GEILG +QSG Sbjct: 955 DLEIRGAGEILGDEQSG 971 >gi|116333178|ref|YP_794705.1| transcription-repair coupling factor [Lactobacillus brevis ATCC 367] gi|116098525|gb|ABJ63674.1| Transcription-repair coupling factor (superfamily II helicase) [Lactobacillus brevis ATCC 367] Length = 1180 Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 145/429 (33%), Positives = 229/429 (53%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW + A E +A ++ L ++ +K P V+ + + P++ T Q Sbjct: 568 EWAKTKSKVAAKIEDIADELVDLYAKRSAEKGYAFP--VDDSLQHDFENDFPYAETPDQL 625 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 I+++ DM + M R+L GDVG GKT VAL A AVEAG Q + P ILAQQHY Sbjct: 626 RTIEEVKHDMEKPRPMDRLLVGDVGYGKTEVALRAAFKAVEAGKQVAFLVPTTILAQQHY 685 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + I VE+ + +A++ + GQ I++GTH L +++ L LV Sbjct: 686 DTMVSRFEGYPINVEMFSRFRTTKQIHQAIKDLETGQLDIVVGTHRLLSQDVKFKNLGLV 745 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 +VDE+ RFGV+ + +L Q VL +TATPIPRTL ++ LG D+S I PA R PI Sbjct: 746 LVDEEQRFGVKHKERLKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPI 805 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516 +T ++ N + + ++ + G + +++ +++ EK + +V + Sbjct: 806 QTYVMEQN-AGAIQDGIRREMQRGGQVFYLHNRVDDIEKTVGQIQVLVPE---------A 855 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 + IHG+M++ E V+ F G +L+ TT+IE GID+ +A+ + +ENA+ GL+QL Sbjct: 856 RVGYIHGKMTEAQLEGVLFDFLRGDYDVLVTTTIIETGIDIPNANTLFVENADRMGLSQL 915 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGR+GR ++ Y P L++ S RL +K+ TE GF IA DL R G Sbjct: 916 YQLRGRIGRSNRVAYAYFTYQPNKVLTEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAG 975 Query: 632 EILGIKQSG 640 +LG +Q G Sbjct: 976 NLLGKQQHG 984 >gi|149926139|ref|ZP_01914401.1| Transcription-repair coupling factor [Limnobacter sp. MED105] gi|149824957|gb|EDM84169.1| Transcription-repair coupling factor [Limnobacter sp. MED105] Length = 1188 Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 159/423 (37%), Positives = 235/423 (55%), Gaps = 21/423 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q +AI+ ++ DM+ M R++ GDVG GKT VAL A +V G Q V++AP Sbjct: 645 FEETADQAAAIRAVIADMTSPRPMDRLVCGDVGFGKTEVALRAAFVSVMDGKQVVLLAPT 704 Query: 331 GILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QH++ F +++ +VE+ P+ R A+E I G+A IIIGTH + Sbjct: 705 TLLAEQHFQTFSDRFSDWPVKVVELSRFKSPK-EIRDAVELINSGRADIIIGTHKVLSSE 763 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +++ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL ++ G D S I Sbjct: 764 VEFSRLGLVIIDEEHRFGVRQKEALKNLRAEVDVLTLTATPIPRTLAMSMEGIRDFSVIA 823 Query: 450 EKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R IKT + D VI E + L G + Y++ +++ + N R +E+ Sbjct: 824 TAPQRRLSIKTFV--RRETDSVIREAVLRELKRGGQVYYLHNEVDTIE--NRREALEKI- 878 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 L E + I I HG+M++ D E VM F +L+ TT+IE GIDV A+ I+I A Sbjct: 879 -LPE---ARIGIAHGQMNERDLERVMRDFYQQRFNVLLCTTIIETGIDVPTANTIVIHRA 934 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEE 623 + FGLAQLHQLRGRVGR + ++ + LSKN+ RL + ED GF +A Sbjct: 935 DKFGLAQLHQLRGRVGRSHHQAYAYMMVNNEEGLSKNAERRLEAITMMEDLGSGFYLAMH 994 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683 DL+ R GE+LG QSG + Q ++ +L A + + ++PDLT+ ++ I Sbjct: 995 DLEIRGAGEVLGANQSGNVHEVGFQ--MYTDMLNHAVRSLR--AGKEPDLTAPLNATVEI 1050 Query: 684 LLY 686 L+ Sbjct: 1051 NLH 1053 >gi|34763024|ref|ZP_00144000.1| Transcription-repair coupling factor [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887325|gb|EAA24419.1| Transcription-repair coupling factor [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 805 Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 143/375 (38%), Positives = 225/375 (60%), Gaps = 13/375 (3%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF+ T +Q AI+D+ +DM M R++ GDVG GKT VA+ A AV G Q +++ P Sbjct: 276 PFTETPAQLKAIEDVKRDMESGKIMDRLICGDVGYGKTEVAIRATFKAVMDGKQVILLVP 335 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHYE + +N + +EI++ + + ++L+RI +G A ++IGTH L D Sbjct: 336 TTVLAEQHYERFSERFKNYPVHIEILSRVQSKKEQTESLKRIENGSADLVIGTHRLLSDD 395 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ + L+I+DE+ +FGV+ + KL + VL +TATPIPRTL L+ LG D+S I Sbjct: 396 IKFKDVGLLIIDEEQKFGVKAKEKLKKIKGDLDVLTLTATPIPRTLNLSLLGIRDLSVID 455 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P GR+ I+T I N+ I ++I L + EG + ++I + ++ ES + + E Sbjct: 456 TSPEGRQKIQTEYIDNNKNLIKDII--LSEISREG-QVFYIFNSV-KRIESKVKEIRE-- 509 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 L E+ ++ IHG+M D + + F+NG +L+ATT+IE GID+ +A+ +IIE Sbjct: 510 -LLPEYI--KVSYIHGQMLPRDIKKNIQEFENGNVDVLVATTIIENGIDIENANTMIIEG 566 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEEDL 625 E GL+Q++QLRGR+GR + S C +L + +KN+ R ++ ++ G +A ED Sbjct: 567 VEKLGLSQVYQLRGRIGRSTKKSYCYMLMNENKTKNAKKREESIREFDNLTGIDLAMEDS 626 Query: 626 KQRKEGEILGIKQSG 640 K R GEILG KQ G Sbjct: 627 KIRGVGEILGEKQHG 641 >gi|225575737|ref|ZP_03784347.1| hypothetical protein RUMHYD_03830 [Blautia hydrogenotrophica DSM 10507] gi|225037050|gb|EEG47296.1| hypothetical protein RUMHYD_03830 [Blautia hydrogenotrophica DSM 10507] Length = 1044 Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 141/413 (34%), Positives = 227/413 (54%), Gaps = 15/413 (3%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 P+ T+ Q AI+D +DM M R++ GDVG GKT +AL A A++ G Q V + Sbjct: 491 FPYEETEDQIQAIEDTKRDMESTKIMDRLICGDVGYGKTEIALRAAFKAIQEGKQVVYLV 550 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P ILAQQHY + + + VE++ A +RK LE + G ++IGTH + Sbjct: 551 PTTILAQQHYNTFVQRMKEFPVRVELLCRFRTPAEQRKTLEGLKKGWVDVVIGTHRVLSK 610 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 ++Y L L+I+DE+ RFGV + K+ + VL +TATPIPRTL ++ +G D+S + Sbjct: 611 DVEYKDLGLLIIDEEQRFGVTHKEKIKKLKNNVDVLTLTATPIPRTLHMSLIGIRDMSVL 670 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 E P R PI+T ++ + + V E ++ L G + Y++ ++ + E V R + Sbjct: 671 EEPPMDRMPIQTYVMEYDE-ETVREAVQRELKRGGQVYYVYNRVNDIAE-----VASRLS 724 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 L + HG+MS+ + E VM F NG +L++TT+IE G+D+ + + +II ++ Sbjct: 725 QLLPDV--QVGFAHGQMSERELEKVMYEFINGELDVLVSTTIIETGLDISNVNTMIIHDS 782 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623 + +GL+QL+QLRGR+GR + L+Y + L + + RLS ++ D GF IA Sbjct: 783 DRYGLSQLYQLRGRIGRSNRTAYAFLMYRKNSILKETAEKRLSAIREFTDLGSGFKIAMR 842 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676 DL+ R G +LG +Q G + +L+ +L A K+AK I + T++ Sbjct: 843 DLELRGAGNLLGAQQHGHMQ--AVGYDLYCKMLNEAVKEAKGITVMEDFETTI 893 >gi|292487974|ref|YP_003530851.1| transcription-repair-coupling factor [Erwinia amylovora CFBP1430] gi|292899191|ref|YP_003538560.1| transcription-repair coupling factor (TrcF) [Erwinia amylovora ATCC 49946] gi|291199039|emb|CBJ46150.1| transcription-repair coupling factor (TrcF) [Erwinia amylovora ATCC 49946] gi|291553398|emb|CBA20443.1| Transcription-repair-coupling factor [Erwinia amylovora CFBP1430] Length = 1148 Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 148/409 (36%), Positives = 220/409 (53%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + + Q + PF T Q AI +L DM Q M R++ Sbjct: 568 LLDIYAQRAAKTGFAFKHDKQQYQLFCESFPFETTVDQAQAINAVLSDMCQPLAMDRLVC 627 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AVE Q ++ P +LAQQHY+ + N + +E+++ Sbjct: 628 GDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMMSRFR 687 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + L G+ I+IGTH L Q+ I+ L L+IVDE+HRFGV+ + ++ Sbjct: 688 TAKEQAQVLADAQEGKVDILIGTHKLLQNDIKLRDLGLLIVDEEHRFGVRHKERIKAMRA 747 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I PA R +KT + D++ R + +L Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDDLAVR-EAIL 803 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ +E N +R + L + +A+ HG+M + + E VM+ Sbjct: 804 REVLRGGQVYYLYNDVE-----NIEKATQRLSELVPE--ARVALGHGQMRERELERVMND 856 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ TT+IE GID+ A+ IIIE A+ FGLAQLHQLRGRVGR + LL Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADRFGLAQLHQLRGRVGRSHHQAYAWLLT 916 Query: 597 -HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 HP ++ +++ RL + + ED GF +A DL+ R GE+LG QSG Sbjct: 917 PHPKAMTTDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEGQSG 965 >gi|297566385|ref|YP_003685357.1| transcription factor CarD [Meiothermus silvanus DSM 9946] gi|296850834|gb|ADH63849.1| transcription factor CarD [Meiothermus silvanus DSM 9946] Length = 988 Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 146/432 (33%), Positives = 234/432 (54%), Gaps = 27/432 (6%) Query: 219 EWTSPARERLAYD--ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276 EW ARE+ D EL A + L R+ PI + +K N P++ T Sbjct: 403 EWKK-AREKAQKDAEELAARMLVLHAKRQATPGRAWAPIPEWDSLIEK---NFPYALTPD 458 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 QE +++D +D+ M R++ GDVG GKT VAL A V G Q ++ P +LA+Q Sbjct: 459 QEKSLEDTFRDLEAPRPMDRLISGDVGFGKTEVALRAAHRVVGHGAQVALLVPTTLLAEQ 518 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 H + K + + VE ++ + ++ L + G I+IGTH L +++ L Sbjct: 519 HTQTFKSRFEGLPVRVEGLSRFTSELDEQRILRDLEAGAVDIVIGTHRLLSGDLRFKDLG 578 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 L+I+DE+HRFGV Q+ ++ + A L ++ATPIPRTL +G D+S I P GRK Sbjct: 579 LLIIDEEHRFGVAQKERIREIAETVDTLYLSATPIPRTLYSALVGLKDLSSIQTPPPGRK 638 Query: 457 PIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLH 511 PI+TV+ P D + R + +LSE G K +++ ++ + ++ ++ Sbjct: 639 PIQTVLAP---YDPSLVR-EAILSEMERGGKVFYVHDRVATIQARQRYLENIAPE----- 689 Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 + I ++HG+M + D E VM +F G +L+ATT+IE G+D+ +A+ I+IE A+ Sbjct: 690 ----ARIGVVHGQMPEGDIEEVMLAFAEGAFDVLLATTIIESGLDIPEANTIVIERADRL 745 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628 GLA L+QLRGRVGR ++ + + P L++ + RLS + + D G L+AE+D++ R Sbjct: 746 GLAALYQLRGRVGRRDQEAYAYFFHPPRLTEAAERRLSAIADLSDLGSGHLLAEKDMEIR 805 Query: 629 KEGEILGIKQSG 640 G +LG +Q G Sbjct: 806 GVGNLLGPEQHG 817 >gi|254491679|ref|ZP_05104858.1| transcription-repair coupling factor [Methylophaga thiooxidans DMS010] gi|224463157|gb|EEF79427.1| transcription-repair coupling factor [Methylophaga thiooxydans DMS010] Length = 1101 Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 156/445 (35%), Positives = 246/445 (55%), Gaps = 29/445 (6%) Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313 P+ G+ PF PT Q+ AI + +DM ++ M R++ GDVG GKT VA+ A Sbjct: 538 PMATPGEDYAAFAAAFPFEPTPDQQDAIDAVTKDMLSEHPMDRLVCGDVGFGKTEVAMRA 597 Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER--- 370 AV +G Q +++ P +LAQQHYE K + + VE+++ + +K L+R Sbjct: 598 AFLAVHSGKQVLVLVPTTLLAQQHYENFKDRFADWPVRVEVLS----RFRSKKELDRVKS 653 Query: 371 -IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429 I+ GQA IIIGTH L Q I+ +L L ++DE+HRFGV Q+ ++ + + VL +TAT Sbjct: 654 GISEGQADIIIGTHKLLQQDIEPKRLGLFVLDEEHRFGVTQKEQIKKYRSQIDVLTLTAT 713 Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489 PIPRTL ++ G D+S I PA R IKT ++ +++ E + + G + Y++ Sbjct: 714 PIPRTLNMSISGIRDLSIIATAPARRLAIKTFVMQWE-AEKIREGMLREIKRGGQVYFLH 772 Query: 490 PQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 ++E+ +ER E + +A+ HG+M + + E VM F + +L+ Sbjct: 773 NKVED---------IERVAREIEAIMPEAKVAVAHGQMRERELEQVMLDFYHQRFNVLVC 823 Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSY 605 TT+IE GIDV A+ I I+ A+ GLAQL+Q+RGRVGR + L+ P ++K++ Sbjct: 824 TTIIETGIDVPSANTIFIDRADKLGLAQLYQIRGRVGRSHHRAYAYLITPPQKVMTKDAV 883 Query: 606 TRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662 RL +++ ED GF +A D++ R GE+LG +QSG + L++ LLE A K Sbjct: 884 KRLEAIESIEDLGAGFTLATHDMEIRGAGELLGDEQSGQMHEIGFN--LYNELLERAVKA 941 Query: 663 AKHILTQDPDLTSVRGQSIRILLYL 687 K ++P LT+ + I L++ Sbjct: 942 MKS--GKEPSLTNQDRHFVEIDLHV 964 >gi|148980820|ref|ZP_01816230.1| transcription-repair coupling factor [Vibrionales bacterium SWAT-3] gi|145961055|gb|EDK26376.1| transcription-repair coupling factor [Vibrionales bacterium SWAT-3] Length = 1153 Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 137/382 (35%), Positives = 213/382 (55%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI ++ DM Q M R++ GDVG GKT VA+ A + Q ++ Sbjct: 599 GFPFEETDDQAMAINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVCTDNSKQVAVL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ ++ ++ +A G+ I++GTH L Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKAIMQDVADGKVDILVGTHKLLS 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 719 SDIKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503 I PA R IKT + + D+ + R V+ + G + Y++ Q++ EK + + + Sbjct: 779 IATPPARRLAIKTF---VRQSDDAVVREAVLREIMRGGQVYFLHNQVDTIEKTAESLQKL 835 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + + + + HG+M + + E +M+ F + LL+ TT+IE GIDV A+ I Sbjct: 836 IPE---------ARVTVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTI 886 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GF 618 +++ A++ GLAQLHQLRGRVGR + LL HP ++K++ RL + + ED GF Sbjct: 887 LMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGF 946 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG +QSG Sbjct: 947 TLATHDLEIRGAGELLGDEQSG 968 >gi|94984652|ref|YP_604016.1| transcription factor CarD [Deinococcus geothermalis DSM 11300] gi|94554933|gb|ABF44847.1| transcription factor CarD [Deinococcus geothermalis DSM 11300] Length = 1041 Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 140/397 (35%), Positives = 224/397 (56%), Gaps = 28/397 (7%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 ++ RN F T Q++A+K+ ++D+ + R++ GDVG GKT VAL A V G Q Sbjct: 481 QVERNFKFELTADQKTALKETMRDLEAPHPADRLISGDVGFGKTEVALRAAHRVVGHGKQ 540 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 ++ P +LA+QH + ++ + VE ++ + L +A G+ IIIGTH Sbjct: 541 VAMLVPTTLLAEQHTSTFVERFKDLPVRVEGLSRFTGDKQAKAILADLAAGKVDIIIGTH 600 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQ-----------------RLKLTQKATAPHVLLM 426 L +Q+ L L+IVDE+HRFGV Q +L+L + A L + Sbjct: 601 RLLSSDVQFKDLGLIIVDEEHRFGVGQKEKLRALRGLPDVPKDGKLELPEGVKAVDTLAL 660 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486 +ATPIPRTL ++ +G D+S I P GRKPI+TV+ P + + V + + + G K + Sbjct: 661 SATPIPRTLYMSMVGLRDMSSIQTPPKGRKPIQTVLAPFDPV-TVRDAILNEIERGGKVF 719 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 +I +I RS+ R N + E + I + HGRM++ + E +M F+ G +L+ Sbjct: 720 YIHDRI---ASIGARSLYLR-NLVPE---ARIGVAHGRMNEEELEEIMLGFEQGAFDVLL 772 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 +TT++E G+D+ +A+ I+IE A+ GLAQL+QLRGRVGR ++ + L Y P +++N+ Sbjct: 773 STTIVETGLDIPEANTILIERADRLGLAQLYQLRGRVGRRQQTAYAYLFYPPRMTENAQR 832 Query: 607 RLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 RL + + +D G L+AE+D++ R G ILG +Q G Sbjct: 833 RLWAIADLQDLGSGHLLAEKDMEIRGVGNILGEEQHG 869 >gi|325122057|gb|ADY81580.1| transcription-repair coupling protein [Acinetobacter calcoaceticus PHEA-2] Length = 1153 Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 148/430 (34%), Positives = 229/430 (53%), Gaps = 23/430 (5%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W+ R+ L +A ++ + R+Q K G V+ + + + T Q + Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFGFEVDQSLYMQFASGFAYEETLDQAN 612 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI+ L DM Q M R++ GDVG GKT VA+ A AV+ G Q ++ P +LAQQHYE Sbjct: 613 AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 K + + +E+++ K +E +A G+ I++GTH L Q+++Q+ L L++ Sbjct: 673 SFKDRFADWPVRIEVLSRFGSNKTHTKNIEDLAEGKVDIVVGTHKLLQENVQFKDLGLMV 732 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 VDE+HRFGV+ + ++ +L +TATPIPRTL + G D+S I PA R +K Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792 Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515 T + I E I R L G + Y++ +++ E+ N R +V Sbjct: 793 TFVQEHTEASIKEAILR---ELLRGGQVYFLHNEVDTIERAAENIRVLVPE--------- 840 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A+ HG+M + + E VM F + +L+ +T+IE GIDV +A+ I+IE A+ GLAQ Sbjct: 841 ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ 900 Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630 LHQLRGRVGR + LL L ++ RL ++ GF++A EDL+ R Sbjct: 901 LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA 960 Query: 631 GEILGIKQSG 640 GE+LG +QSG Sbjct: 961 GELLGEQQSG 970 >gi|312172099|emb|CBX80356.1| Transcription-repair-coupling factor [Erwinia amylovora ATCC BAA-2158] Length = 1148 Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 148/409 (36%), Positives = 220/409 (53%), Gaps = 19/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + + Q + PF T Q AI +L DM Q M R++ Sbjct: 568 LLDIYAQRAAKTGFAFKHDKQQYQLFCESFPFETTVDQAQAINAVLSDMCQPLAMDRLVC 627 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AVE Q ++ P +LAQQHY+ + N + +E+++ Sbjct: 628 GDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMMSRFR 687 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + L G+ I+IGTH L Q+ I+ L L+IVDE+HRFGV+ + ++ Sbjct: 688 TAKEQAQVLADAQEGKVDILIGTHKLLQNDIKLRDLGLLIVDEEHRFGVRHKERIKAMRA 747 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I PA R +KT + D++ R + +L Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDDLAVR-EAIL 803 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 E G + Y++ +E N +R + L + +A+ HG+M + + E VM+ Sbjct: 804 REVLRGGQVYYLYNDVE-----NIEKATQRLSELVPE--ARVALGHGQMRERELERVMND 856 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F + +L+ TT+IE GID+ A+ IIIE A+ FGLAQLHQLRGRVGR + LL Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADRFGLAQLHQLRGRVGRSHHQAYAWLLT 916 Query: 597 -HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 HP ++ +++ RL + + ED GF +A DL+ R GE+LG QSG Sbjct: 917 PHPKAMTTDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEGQSG 965 >gi|293608212|ref|ZP_06690515.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828785|gb|EFF87147.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 1153 Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 148/430 (34%), Positives = 229/430 (53%), Gaps = 23/430 (5%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W+ R+ L +A ++ + R+Q K G V+ + + + T Q + Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFGFEVDQSLYMQFASGFAYEETLDQAN 612 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI+ L DM Q M R++ GDVG GKT VA+ A AV+ G Q ++ P +LAQQHYE Sbjct: 613 AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 K + + +E+++ K +E +A G+ I++GTH L Q+++Q+ L L++ Sbjct: 673 SFKDRFADWPVRIEVLSRFGSNKTHTKNIEDLAEGKVDIVVGTHKLLQENVQFKDLGLMV 732 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 VDE+HRFGV+ + ++ +L +TATPIPRTL + G D+S I PA R +K Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792 Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515 T + I E I R L G + Y++ +++ E+ N R +V Sbjct: 793 TFVQEHTEASIKEAILR---ELLRGGQVYFLHNEVDTIERAAENIRVLVPE--------- 840 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A+ HG+M + + E VM F + +L+ +T+IE GIDV +A+ I+IE A+ GLAQ Sbjct: 841 ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ 900 Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630 LHQLRGRVGR + LL L ++ RL ++ GF++A EDL+ R Sbjct: 901 LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA 960 Query: 631 GEILGIKQSG 640 GE+LG +QSG Sbjct: 961 GELLGEQQSG 970 >gi|326567865|gb|EGE17966.1| transcription-repair coupling factor [Moraxella catarrhalis 12P80B1] Length = 1184 Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 149/412 (36%), Positives = 228/412 (55%), Gaps = 25/412 (6%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL ++ + + GI +++ + F T Q AI ++ DM Q M R++ Sbjct: 604 LLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQNKPMDRLIC 663 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358 GDVG GKT VA+ A AV+AG Q ++ P +LA QH + F+ ++ + I +E ++ Sbjct: 664 GDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHEDSFLNRFA-DWPIKIESLSRF 722 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + H+ L +A G I+IGTH L QD +++ +L L+I+DE+HRFGV+ + ++ Sbjct: 723 GNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMIIDEEHRFGVRHKERIKALQ 782 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 T L MTATPIPRTL + G DIS I PA R IKT ++P + DE I+ + + Sbjct: 783 TNIDSLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFLLP--KSDETIK--EAI 838 Query: 479 LSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 L E G + Y++ + E R +V + +A+ HG+M++ + V Sbjct: 839 LREILRGGQVYYLHNDVASIEAAADTLRELVGE---------ARVAVAHGQMNERELSVV 889 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M+ F + +L+A+T+IE GIDV +A+ III A+ FG+AQLHQLRGRVGR + C Sbjct: 890 MNDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQLRGRVGRSHHQAYCY 949 Query: 594 LLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 L+ LS ++ RL+ + GF++A EDL+ R GEILG +QSG Sbjct: 950 LMVPSLKGLSSDAKKRLNAITRANTLGAGFMLASEDLEIRGAGEILGKEQSG 1001 >gi|326575775|gb|EGE25698.1| transcription-repair coupling factor [Moraxella catarrhalis CO72] Length = 1184 Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 149/412 (36%), Positives = 228/412 (55%), Gaps = 25/412 (6%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL ++ + + GI +++ + F T Q AI ++ DM Q M R++ Sbjct: 604 LLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQNKPMDRLIC 663 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358 GDVG GKT VA+ A AV+AG Q ++ P +LA QH + F+ ++ + I +E ++ Sbjct: 664 GDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHEDSFLNRFA-DWPIKIESLSRF 722 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + H+ L +A G I+IGTH L QD +++ +L L+I+DE+HRFGV+ + ++ Sbjct: 723 GNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMIIDEEHRFGVRHKERIKALQ 782 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 T L MTATPIPRTL + G DIS I PA R IKT ++P + DE I+ + + Sbjct: 783 TNIDSLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFLLP--KSDETIK--EAI 838 Query: 479 LSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 L E G + Y++ + E R +V + +A+ HG+M++ + V Sbjct: 839 LREILRGGQVYYLHNDVASIEAAADTLRELVGE---------ARVAVAHGQMNERELSVV 889 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M+ F + +L+A+T+IE GIDV +A+ III A+ FG+AQLHQLRGRVGR + C Sbjct: 890 MNDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQLRGRVGRSHHQAYCY 949 Query: 594 LLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 L+ LS ++ RL+ + GF++A EDL+ R GEILG +QSG Sbjct: 950 LMVPSLKGLSSDAKKRLNAITRANTLGAGFMLASEDLEIRGAGEILGKEQSG 1001 >gi|87241294|gb|ABD33152.1| Helicase, C-terminal; Haem peroxidase, plant/fungal/bacterial [Medicago truncatula] Length = 494 Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 136/380 (35%), Positives = 220/380 (57%), Gaps = 17/380 (4%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 P+ PT Q+ A D+ +D++++ M R++ GDVG GKT VA+ A+ V A QA+++ Sbjct: 99 FPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAMRAIHCVVAAKKQAMVL 158 Query: 328 APIGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 AP +LA+QH++ I ++++ I V +++ ++ + LE I +G II+GTH+L Sbjct: 159 APTIVLAKQHFDVISERFSVYPDIKVGLLSRFQTRSEKEAYLEMIKNGDLDIIVGTHSLL 218 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 + + Y L L++VDE+ RFGV+Q+ ++ T+ VL ++ATPIPRTL L G D S Sbjct: 219 GNRVVYNNLGLLVVDEEQRFGVKQKERIASFKTSVDVLTLSATPIPRTLYLALTGFRDAS 278 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 I+ P R PIKT + ++ D+VI +K L + +++ P+I + + E Sbjct: 279 LISTPPPERVPIKTQLSSFSK-DKVISAIKYELDRSGQVFYVLPRI--------KGLEEA 329 Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 L E F IA+ HG+ E M+ F G K+LI+T ++E G+D+ +A+ III Sbjct: 330 MEFLEEAFPDVEIAVAHGKQFSKQLEDTMEKFTLGEIKILISTNIVESGLDIQNANTIII 389 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLI 620 ++ + FGLAQL+QLRGRVGR ++ + L Y L+ + RL+ L+ + GF + Sbjct: 390 QDVQQFGLAQLYQLRGRVGRADKEAYAYLFYPDKSLLTDQALERLAALEECRELGQGFQL 449 Query: 621 AEEDLKQRKEGEILGIKQSG 640 AE D+ R G I G +Q+G Sbjct: 450 AERDMGIRGFGTIFGEQQTG 469 >gi|126641668|ref|YP_001084652.1| transcription-repair coupling protein [Acinetobacter baumannii ATCC 17978] Length = 1054 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 148/430 (34%), Positives = 230/430 (53%), Gaps = 23/430 (5%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W+ R+ L +A ++ + R+Q K G ++ + + + T Q + Sbjct: 456 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFAFELDQSLYMQFASGFAYEETLDQAN 513 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI+ L DM Q M R++ GDVG GKT VA+ A AV+ G Q ++ P +LAQQHYE Sbjct: 514 AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFIAVQNGKQVAVLVPTTLLAQQHYE 573 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 K + + +E+++ K +E +A+G+ I++GTH L Q+++Q+ L L++ Sbjct: 574 SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMV 633 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 VDE+HRFGV+ + ++ +L +TATPIPRTL + G D+S I PA R +K Sbjct: 634 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 693 Query: 460 TVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515 T + I E I R L G + Y++ ++E E+ N R +V Sbjct: 694 TFVQEHTDASIKEAILR---ELLRGGQVYFLHNEVETIERAAENIRVLVPE--------- 741 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A+ HG+M + + E VM F + +L+ +T+IE GIDV +A+ I+IE A+ GLAQ Sbjct: 742 ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ 801 Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630 LHQLRGRVGR + LL L ++ RL ++ GF++A EDL+ R Sbjct: 802 LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA 861 Query: 631 GEILGIKQSG 640 GE+LG +QSG Sbjct: 862 GELLGEQQSG 871 >gi|262370461|ref|ZP_06063787.1| transcription-repair coupling protein [Acinetobacter johnsonii SH046] gi|262314803|gb|EEY95844.1| transcription-repair coupling protein [Acinetobacter johnsonii SH046] Length = 1152 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 149/428 (34%), Positives = 230/428 (53%), Gaps = 19/428 (4%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W+ R+ L +A ++ + R+Q K G ++ +G+ Q + T Q + Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQAKPGFGFELD-QGQYMQ-FASGFAYEETLDQAN 612 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI+ L DM M R++ GDVG GKT VA+ A AV+ Q ++ P +LAQQHYE Sbjct: 613 AIEATLYDMQLAKPMDRLVCGDVGFGKTEVAMRAAFLAVQNNKQVAVLVPTTLLAQQHYE 672 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 K + I +E+++ K +E +A G+ I+IGTH + Q+S+Q+ L L+I Sbjct: 673 SFKDRFADWPIRIEVLSRFGSSKSHTKTIEDLAEGKVDIVIGTHKILQESVQFKDLGLMI 732 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 VDE+HRFGV+ + ++ +L +TATPIPRTL + G D+S I PA R +K Sbjct: 733 VDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792 Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSS 517 T + + D V E + L G + Y++ ++E E+ + R +V + Sbjct: 793 T-FVQEHTGDSVKEAILRELLRGGQVYFLHNEVETIERAAESLRELVPE---------AR 842 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 +A+ HG+M + + E VM F + +L+ +T+IE GIDV +A+ I+IE A+ GLAQLH Sbjct: 843 VAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQLH 902 Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632 QLRGRVGR + LL L ++ RL ++ GF++A EDL+ R GE Sbjct: 903 QLRGRVGRSHHQAYAYLLVPSIKGLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGE 962 Query: 633 ILGIKQSG 640 +LG +QSG Sbjct: 963 LLGEQQSG 970 >gi|326790211|ref|YP_004308032.1| transcription-repair coupling factor [Clostridium lentocellum DSM 5427] gi|326540975|gb|ADZ82834.1| transcription-repair coupling factor [Clostridium lentocellum DSM 5427] Length = 1179 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 136/377 (36%), Positives = 214/377 (56%), Gaps = 15/377 (3%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q AI+D+ +DM M R++ GDVG GKT VA+ A AV+ Q + P Sbjct: 632 PYEETGDQLEAIEDVKKDMESDKIMDRLICGDVGYGKTEVAIRAAFKAVQNSKQVAYLVP 691 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHY+ + + I +E+++ +K+LE +A G+ II+GTH L Sbjct: 692 TTILAQQHYQRFAERMADYPITIELLSRFRTPKQIKKSLEGLASGKVDIIVGTHRLLSKD 751 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +Q+ L LVI+DE+ RFGV + KL Q T V+ +TATPIPRTL ++ +G D+S + Sbjct: 752 VQFKDLGLVIIDEEQRFGVTHKEKLKQLRTQVDVMNLTATPIPRTLHMSLIGIRDMSVLE 811 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 E P RKP++T +I + D + + + L+ G + Y++ Q+ + + E+ ++ Sbjct: 812 EAPVERKPVQTYVIEYSE-DFIKDAINRELTRGGQVYFLHNQV--------KDIEEKAHA 862 Query: 510 LHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 + E + +A HG+MS+ + E +M F G +L+ TT+IE G+D+ +A+ II+ +A Sbjct: 863 IQELIPKARVAFAHGQMSERELEQIMLRFIEGEIDVLVCTTIIETGLDISNANTIIMNHA 922 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEE 623 + GL+QL+QLRGRVGR + L+Y L + + RL +K + GF IA Sbjct: 923 DRMGLSQLYQLRGRVGRSSRMGYAYLMYQKDKVLKEVAEKRLQAIKQFTELGAGFKIAMR 982 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R G +LG +Q G Sbjct: 983 DLEIRGAGNLLGAQQHG 999 >gi|281490512|ref|YP_003352492.1| transcription-repair coupling factor [Lactococcus lactis subsp. lactis KF147] gi|281374330|gb|ADA63863.1| Transcription-repair coupling factor [Lactococcus lactis subsp. lactis KF147] Length = 1161 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 143/438 (32%), Positives = 232/438 (52%), Gaps = 25/438 (5%) Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 K D W E ++ + L +Q KK G + + ++ + Sbjct: 552 KLNDGRWRKTMSSVSKQVEDISDDLIKLYAERQAKK--GFAFSPDDTSQEEFDSGFSYVE 609 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T+ Q +I +I DM + M R+L GDVG GKT VA+ A A+ G Q ++ P +L Sbjct: 610 TEDQMRSINEIKHDMELERPMDRLLVGDVGFGKTEVAMRAAFKAINDGKQVAVLVPTTVL 669 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QH+ + N + VE+++ + + + L ++ G+ +IIGTH L ++++ Sbjct: 670 AEQHFNNFTERFINFGVNVEVLSRFQTKTQQTEILAKLKKGRVDLIIGTHRLLSKDVEFF 729 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L L+I+DE+ RFGV+ + +L + T VL +TATPIPRTL ++ LG D+S I P Sbjct: 730 DLGLMIIDEEQRFGVKHKERLKELKTQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 789 Query: 454 GRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508 R P++T ++ N D V+ +S G + Y++ +++ E+K S ++ Sbjct: 790 NRYPVQTYVMETNYGVVRDAVLRE----ISRGGQVYYVYNRVDTIEQKVSQLEELIPE-- 843 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 + I IHG+M+++ E+ + +F G +L+ATT+IE G+D+ +A+ + IENA Sbjct: 844 -------ARIGFIHGQMTEVQLENTLLAFIAGDYDVLVATTIIETGVDIPNANTLFIENA 896 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623 + GL+QL+QLRGRVGR ++ +Y P LS+ S RL +K TE GF IA Sbjct: 897 DMMGLSQLYQLRGRVGRSNRVAYAYFMYRPEKILSEVSEKRLEAIKGFTELGSGFKIAMR 956 Query: 624 DLKQRKEGEILGIKQSGM 641 DL R G +LG +QSG Sbjct: 957 DLSIRGAGNLLGSEQSGF 974 >gi|16331597|ref|NP_442325.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803] gi|3914015|sp|Q55750|MFD_SYNY3 RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|1001661|dbj|BAA10395.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803] Length = 1199 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 141/412 (34%), Positives = 232/412 (56%), Gaps = 20/412 (4%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 + LL + + K++G + Q++ + P+ PT Q A++D+ +D+ M R+ Sbjct: 611 VDLLNLYAKRAKQVGYAYPPDSPWQQELEDSFPYQPTPDQLKAVQDVKRDLEGDRPMDRL 670 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 + GDVG GKT VA+ A+ AV +G Q ++AP +L QQHY +K+ I + ++ Sbjct: 671 VCGDVGFGKTEVAVRAIFKAVTSGNKQVALLAPTTVLTQQHYHTLKERFAPYPITIGLLN 730 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 + +++ L ++ G+ I++GT + S+++ L L+++DE+ RFGV Q+ K+ Sbjct: 731 RFRTASEKKEILAKLKSGELDIVVGTQQVLGTSVKFKDLGLLVIDEEQRFGVNQKEKIKT 790 Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-L 475 T VL +TATPIPRTL ++ G ++S IT P R+PIKT + P N EVI + Sbjct: 791 LKTEVDVLTLTATPIPRTLYMSLSGIREMSLITTPPPSRRPIKTHLSPYN--PEVIRTAI 848 Query: 476 KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 + L G + +++ P+IE E+ R +V ++ IAI HG+M + + ES Sbjct: 849 RNELDRGGQVFYVVPRIEGIEELGGQLRQMVP---------SARIAIGHGQMEESELEST 899 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M +F +G +L+ TT+IE G+D+ + II+E+A+ FGLAQL+QLRGRVGR + Sbjct: 900 MLAFNDGEADILVCTTIIEAGLDIPRVNTIIVEDAQKFGLAQLYQLRGRVGRSGIQAHAW 959 Query: 594 LLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640 LLY L++ + RL L+ G+ +A D++ R G +LG +QSG Sbjct: 960 LLYPNQKQLTEKARLRLRALQEFSQLGSGYQLATRDMEIRGVGNLLGAEQSG 1011 >gi|319789291|ref|YP_004150924.1| transcription-repair coupling factor [Thermovibrio ammonificans HB-1] gi|317113793|gb|ADU96283.1| transcription-repair coupling factor [Thermovibrio ammonificans HB-1] Length = 1058 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 145/408 (35%), Positives = 226/408 (55%), Gaps = 21/408 (5%) Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 + K+ K +G + + + ++ R P+ T Q AI+++ +DM + M R++ GDV Sbjct: 504 LYKERKSAVGERLKGDEALLREFERRFPYRLTPDQSKAIREVYRDMESERPMDRLICGDV 563 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 G GKT VA+ A AV +G Q ++AP +LA QHY +K + + +E+++ + Sbjct: 564 GFGKTEVAMRAAMKAVTSGKQVAVIAPTTVLADQHYRTFRKRFKGFPVKIEMLSRFKSKK 623 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 +R+ LE++ G+ I+IGTH L QD +++ L L+I+DE+HRFGV+ + KLT+ + Sbjct: 624 EQREILEKLKRGEVDIVIGTHRLTQDDVEFKDLGLLIIDEEHRFGVKTKEKLTKLKSNID 683 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV----IERLKVV 478 VL ++ATPIPRTL G DIS I PAGR+ K V+ + DE+ IER Sbjct: 684 VLYLSATPIPRTLYSALSGFRDISLIETPPAGRRGTKVVVSRYS--DELFKAAIER---E 738 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 L+ G + + + I S + E+ L + ++HG+M E VM F Sbjct: 739 LARGGQVFIVQNDI-----SKLEEIKEKVERLFPGV--KVGVVHGQMRSSQIEKVMHQFF 791 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 G ++L++T ++E G+DV A+ +I+ AE FGL+QL+QL+GRVGRG E C L P Sbjct: 792 EGELQVLVSTAIVESGLDVPTANTLIVIGAERFGLSQLYQLKGRVGRGVEKGYCYLFTTP 851 Query: 599 --PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGM 641 L+ + RL +K GF +A +DL+ R G +LG KQSG Sbjct: 852 GVKLTAEAVKRLEAMKKLAPLGGGFRLALKDLEIRGAGTLLGPKQSGF 899 >gi|326559271|gb|EGE09699.1| transcription-repair coupling factor [Moraxella catarrhalis 103P14B1] gi|326560196|gb|EGE10584.1| transcription-repair coupling factor [Moraxella catarrhalis 7169] gi|326564935|gb|EGE15137.1| transcription-repair coupling factor [Moraxella catarrhalis 46P47B1] gi|326573327|gb|EGE23295.1| transcription-repair coupling factor [Moraxella catarrhalis 101P30B1] gi|326576857|gb|EGE26763.1| transcription-repair coupling factor [Moraxella catarrhalis O35E] Length = 1184 Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 149/412 (36%), Positives = 228/412 (55%), Gaps = 25/412 (6%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL ++ + + GI +++ + F T Q AI ++ DM Q M R++ Sbjct: 604 LLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQNKPMDRLIC 663 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358 GDVG GKT VA+ A AV+AG Q ++ P +LA QH + F+ ++ + I +E ++ Sbjct: 664 GDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHEDSFLNRFA-DWPIKIESLSRF 722 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + H+ L +A G I+IGTH L QD +++ +L L+I+DE+HRFGV+ + ++ Sbjct: 723 GNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMIIDEEHRFGVRHKERIKALQ 782 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 T L MTATPIPRTL + G DIS I PA R IKT ++P + DE I+ + + Sbjct: 783 TNIDSLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFLLP--KSDETIK--EAI 838 Query: 479 LSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 L E G + Y++ + E R +V + +A+ HG+M++ + V Sbjct: 839 LREILRGGQVYYLHNDVASIEAAADTLRELVGE---------ARVAVAHGQMNERELSVV 889 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M+ F + +L+A+T+IE GIDV +A+ III A+ FG+AQLHQLRGRVGR + C Sbjct: 890 MNDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQLRGRVGRSHHQAYCY 949 Query: 594 LLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 L+ LS ++ RL+ + GF++A EDL+ R GEILG +QSG Sbjct: 950 LMVPSLKGLSSDAKKRLNAITRANTLGAGFMLASEDLEIRGAGEILGKEQSG 1001 >gi|307154808|ref|YP_003890192.1| transcription-repair coupling factor [Cyanothece sp. PCC 7822] gi|306985036|gb|ADN16917.1| transcription-repair coupling factor [Cyanothece sp. PCC 7822] Length = 1169 Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 137/397 (34%), Positives = 223/397 (56%), Gaps = 18/397 (4%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G + Q++ + P+ PT Q A++++ +D+ M R++ GDVG GKT VA+ Sbjct: 602 GFSFPTDSPWQQELEDSFPYQPTPDQLKAVQEVKRDLESDRPMDRLVCGDVGFGKTEVAV 661 Query: 312 IAMAAAVEAGG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370 A+ AV +G Q +AP IL QQHY +K+ I + ++ + + L+R Sbjct: 662 RAIFKAVTSGNKQVAFLAPTTILTQQHYHTLKERFAPYPINIGLLNRFRTPSENKDILQR 721 Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430 ++ G+ I++GTH L + I++ L L+++DE+ RFGV Q+ K+ T VL +TATP Sbjct: 722 LSTGELDIVVGTHQLLSNKIKFKDLGLLVIDEEQRFGVNQKEKIKTLKTQVDVLTLTATP 781 Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490 IPRTL ++ G ++S IT P R+PIKT + P N D + ++ L G + +++ P Sbjct: 782 IPRTLYMSLSGVREMSLITTPPPSRRPIKTHLSPYNS-DVIRTAIRNELDRGGQIFYVVP 840 Query: 491 QIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548 ++E E+ + R +V T+ IAI HG+M + E+ M +F NG +L+ T Sbjct: 841 RVEGIEEVAAEIRQMVP---------TARIAIAHGQMDVSELETTMLAFNNGEADVLVCT 891 Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYT 606 T+IE G+D+ + II+E+A+ FGL+QL+QLRGRVGR + L+Y L++ + Sbjct: 892 TIIESGLDIPRVNTIIVEDAQKFGLSQLYQLRGRVGRSGIQAHAWLVYPHKAALTETARQ 951 Query: 607 RLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSG 640 RL L+ G+ +A D++ R G +LG +QSG Sbjct: 952 RLRALQEFTQLGSGYQLATRDMEIRGVGNLLGAEQSG 988 >gi|163848640|ref|YP_001636684.1| transcription-repair coupling factor [Chloroflexus aurantiacus J-10-fl] gi|222526576|ref|YP_002571047.1| transcription-repair coupling factor [Chloroflexus sp. Y-400-fl] gi|163669929|gb|ABY36295.1| transcription-repair coupling factor [Chloroflexus aurantiacus J-10-fl] gi|222450455|gb|ACM54721.1| transcription-repair coupling factor [Chloroflexus sp. Y-400-fl] Length = 1185 Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 151/429 (35%), Positives = 235/429 (54%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W R+ A + LA ++ L ++Q K G + + + +++ + P+ T Q Sbjct: 563 DWERTKRKVRAAVQDLAEELLRLYAQRQLKS--GYAFSPDNEWQRELEASFPYLETDDQL 620 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 AI ++ DM + M R++ GDVG GKT VAL A AV+ G Q I+ P +LAQQH+ Sbjct: 621 RAIAEVKADMEKPTPMDRLVCGDVGFGKTEVALRAAFKAVQDGKQVAILVPTTVLAQQHF 680 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + +K + VE+++ + + +A G+ IIIGTH L + + + L LV Sbjct: 681 DTFRKRMAAFPVTVEMLSRFRSPKEQDAIIRDLARGKIDIIIGTHRLLSNDVVFRNLGLV 740 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L T VL +TATPIPRTL + G D+S I P R PI Sbjct: 741 IIDEEQRFGVRHKERLKLMRTEVDVLTLTATPIPRTLHMALAGIRDLSVIDTPPEDRIPI 800 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 KT ++P + I EVI R L + Y + +++ + V ER L + Sbjct: 801 KTYVVPTDDHLIQEVIRR---ELEREGQVYVVHNRVQ-----SIYHVAERLRRLVPE--A 850 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 IA+ HG++++ + E VM F G +L+ TT+IE G+DV +A+ III++A ++GLAQL Sbjct: 851 RIAVGHGQLAERELEQVMIDFFEGRYDVLVCTTIIESGLDVPNANTIIIDDATNYGLAQL 910 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 +QLRGRVGRG + LLY+ ++ ++ RL ++ + GF IA DL+ R G Sbjct: 911 YQLRGRVGRGATRAYAYLLYNAARVMTNDARLRLEAIQEATELGAGFRIAMRDLEIRGAG 970 Query: 632 EILGIKQSG 640 +LG +QSG Sbjct: 971 NLLGAEQSG 979 >gi|326570293|gb|EGE20338.1| transcription-repair coupling factor [Moraxella catarrhalis BC8] Length = 1184 Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 149/412 (36%), Positives = 228/412 (55%), Gaps = 25/412 (6%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL ++ + + GI +++ + F T Q AI ++ DM Q M R++ Sbjct: 604 LLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQNKPMDRLIC 663 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358 GDVG GKT VA+ A AV+AG Q ++ P +LA QH + F+ ++ + I +E ++ Sbjct: 664 GDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHEDSFLNRFA-DWPIKIESLSRF 722 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + H+ L +A G I+IGTH L QD +++ +L L+I+DE+HRFGV+ + ++ Sbjct: 723 GNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMIIDEEHRFGVRHKERIKALQ 782 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 T L MTATPIPRTL + G DIS I PA R IKT ++P + DE I+ + + Sbjct: 783 TNIDSLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFLLP--KSDETIK--EAI 838 Query: 479 LSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 L E G + Y++ + E R +V + +A+ HG+M++ + V Sbjct: 839 LREILRGGQVYYLHNDVASIEAAADTLRELVGE---------ARVAVAHGQMNERELSVV 889 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M+ F + +L+A+T+IE GIDV +A+ III A+ FG+AQLHQLRGRVGR + C Sbjct: 890 MNDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQLRGRVGRSHHQAYCY 949 Query: 594 LLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 L+ LS ++ RL+ + GF++A EDL+ R GEILG +QSG Sbjct: 950 LMVPSLKGLSSDAKKRLNAITRANTLGAGFMLASEDLEIRGAGEILGKEQSG 1001 >gi|326566625|gb|EGE16767.1| transcription-repair coupling factor [Moraxella catarrhalis BC1] Length = 1184 Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 149/412 (36%), Positives = 228/412 (55%), Gaps = 25/412 (6%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL ++ + + GI +++ + F T Q AI ++ DM Q M R++ Sbjct: 604 LLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQSKPMDRLIC 663 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358 GDVG GKT VA+ A AV+AG Q ++ P +LA QH + F+ ++ + I +E ++ Sbjct: 664 GDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHEDSFLNRFA-DWPIKIESLSRF 722 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + H+ L +A G I+IGTH L QD +++ +L L+I+DE+HRFGV+ + ++ Sbjct: 723 GNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMIIDEEHRFGVRHKERIKALQ 782 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 T L MTATPIPRTL + G DIS I PA R IKT ++P + DE I+ + + Sbjct: 783 TNIDSLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFLLP--KSDETIK--EAI 838 Query: 479 LSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 L E G + Y++ + E R +V + +A+ HG+M++ + V Sbjct: 839 LREILRGGQVYYLHNDVASIEAAADTLRELVGE---------ARVAVAHGQMNERELSVV 889 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M+ F + +L+A+T+IE GIDV +A+ III A+ FG+AQLHQLRGRVGR + C Sbjct: 890 MNDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQLRGRVGRSHHQAYCY 949 Query: 594 LLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 L+ LS ++ RL+ + GF++A EDL+ R GEILG +QSG Sbjct: 950 LMVPSLKGLSSDAKKRLNAITRANTLGAGFMLASEDLEIRGAGEILGKEQSG 1001 >gi|193077268|gb|ABO12050.2| transcription-repair coupling protein [Acinetobacter baumannii ATCC 17978] Length = 1153 Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 148/430 (34%), Positives = 230/430 (53%), Gaps = 23/430 (5%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W+ R+ L +A ++ + R+Q K G ++ + + + T Q + Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFAFELDQSLYMQFASGFAYEETLDQAN 612 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI+ L DM Q M R++ GDVG GKT VA+ A AV+ G Q ++ P +LAQQHYE Sbjct: 613 AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFIAVQNGKQVAVLVPTTLLAQQHYE 672 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 K + + +E+++ K +E +A+G+ I++GTH L Q+++Q+ L L++ Sbjct: 673 SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMV 732 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 VDE+HRFGV+ + ++ +L +TATPIPRTL + G D+S I PA R +K Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792 Query: 460 TVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515 T + I E I R L G + Y++ ++E E+ N R +V Sbjct: 793 TFVQEHTDASIKEAILR---ELLRGGQVYFLHNEVETIERAAENIRVLVPE--------- 840 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A+ HG+M + + E VM F + +L+ +T+IE GIDV +A+ I+IE A+ GLAQ Sbjct: 841 ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ 900 Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630 LHQLRGRVGR + LL L ++ RL ++ GF++A EDL+ R Sbjct: 901 LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA 960 Query: 631 GEILGIKQSG 640 GE+LG +QSG Sbjct: 961 GELLGEQQSG 970 >gi|300723616|ref|YP_003712921.1| transcription-repair ATP-dependent coupling factor [Xenorhabdus nematophila ATCC 19061] gi|297630138|emb|CBJ90775.1| transcription-repair ATP-dependent coupling factor [Xenorhabdus nematophila ATCC 19061] Length = 1148 Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 142/387 (36%), Positives = 211/387 (54%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q ++ PF T QE I +L DM Q M R++ GDVG GKT VA+ A ++ Sbjct: 590 QLFCQSFPFDTTPDQEQTINAVLDDMCQPIAMDRLVCGDVGFGKTEVAMRAAFLSIINNK 649 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+++ +++ ++ A G+ IIIGT Sbjct: 650 QVAVLVPTTLLAQQHYDNFRDRFANWPVHIEVMSRFRSVREQQQVIDMAAEGKVDIIIGT 709 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q + + L L+IVDE+HRFGV+ + ++ VL +TATPIPRTL + G Sbjct: 710 HKLLQSDLCWKDLGLLIVDEEHRFGVRHKERIKAIRADVDVLTLTATPIPRTLNMAMSGM 769 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498 D+S I PA R +KT + D ++ R ++ + G + Y++ +E EK + Sbjct: 770 RDLSIIATPPARRLAVKTF---VREYDSLVVRESILREILRGGQVYYLYNDVENIEKTRA 826 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + I + HG+M + D E VM F + +L+ TT+IE GID+ Sbjct: 827 RLEELVPE---------ARIVVGHGQMRERDLERVMTDFHHQRFNVLVCTTIIETGIDIP 877 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED 616 A+ IIIE A+H GLAQLHQLRGRVGR + LL HP ++K++ RL + + ED Sbjct: 878 SANTIIIERADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAQKRLEAIASLED 937 Query: 617 ---GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 938 LGAGFALATHDLEIRGAGELLGEDQSG 964 >gi|312869845|ref|ZP_07729986.1| transcription-repair coupling factor [Lactobacillus oris PB013-T2-3] gi|311094624|gb|EFQ52927.1| transcription-repair coupling factor [Lactobacillus oris PB013-T2-3] Length = 1178 Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 147/455 (32%), Positives = 246/455 (54%), Gaps = 23/455 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R + E +A ++ L +++ K P + + + N P++ T+ Q Sbjct: 571 EWAKTKRRVESKVEDIADELVDLYAKREAAKGYAFP--ADDYLQAQFDANFPYNETRDQL 628 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +IK++ +DM + M R+L GDVG GKT VA+ A+ AV G Q + P +LAQQH+ Sbjct: 629 RSIKEVKRDMEKPRPMDRLLVGDVGYGKTEVAMRAIFKAVTGGKQVAFLVPTTVLAQQHF 688 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + K + + +++ ++ + G I++GTH + +Q+ L LV Sbjct: 689 DTLSKSFAGFPVKIALMSRFKTNQELKETDAGLVDGSVDIVVGTHRILSKDVQFKDLGLV 748 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + +L + VL +TATPIPRTL ++ LG D+S + PAGR PI Sbjct: 749 IVDEEQRFGVKHKERLKELKNNVDVLTLTATPIPRTLNMSMLGVRDLSVLETPPAGRFPI 808 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T ++ N I + I R ++ G + Y++ ++ + +E+ V + SL + Sbjct: 809 QTYVMEQNDGAIRDGITR---EMNRGGQVYYLHNRVNDIEET-----VLKLQSLVPE--A 858 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 I IHG+MS+ + E+V+ F +L+ T++IE G+D+ + + + +ENA+H GLAQL Sbjct: 859 RIGYIHGKMSENELETVLYDFIQDNYDVLVTTSIIETGVDIPNVNTLFVENADHLGLAQL 918 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +Q+RGR+GR ++ +Y P L++ RL+ +++ TE GF IA DL R G Sbjct: 919 YQIRGRIGRSNRVAYAYFMYQPNKVLTEQGEKRLAAIRDFTELGSGFKIAMRDLAIRGAG 978 Query: 632 EILGIKQSGMPKFLIAQPELHDSLLE--IARKDAK 664 ILG +Q G + +L+ S+L +ARK K Sbjct: 979 NILGKQQHGFIDSV--GYDLYSSMLNEAVARKQGK 1011 >gi|253580889|ref|ZP_04858151.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847731|gb|EES75699.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 1107 Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 161/491 (32%), Positives = 260/491 (52%), Gaps = 23/491 (4%) Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWT-SPARERLAYDELLAGQIALLLMRKQFKKE 250 D LQK S ++A + K EW + ++ R A + + L +R++ + Sbjct: 491 DCLQKYSGADASKAPKL----NKLGTQEWNKTKSKVRGAVKNIAKELVELYAVRQEKEGY 546 Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310 + P V + +++ P+ T+ Q SAI+D +DM M R++ GDVG GKT VA Sbjct: 547 VCGPDTVWQREFEEMF---PYEETEDQLSAIEDAKRDMESTRIMDRLICGDVGYGKTEVA 603 Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370 L A V+ Q +AP ILAQQ Y + + + VE++ A ++KA+E Sbjct: 604 LRAAFKEVQESRQVAYLAPTTILAQQIYNTFVQRMKEFPVRVELLCRFRTPAQQKKAIED 663 Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430 + GQ +IIGTH + +Q+ L L+IVDE+ RFGV + K+ Q VL +TATP Sbjct: 664 LKKGQVDVIIGTHRILSKDVQFKNLGLLIVDEEQRFGVTHKEKIKQLKKDVDVLTLTATP 723 Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490 IPRTL ++ +G D+S + E P R PI+T ++ + + V E + L G + Y++ Sbjct: 724 IPRTLHMSLIGIRDMSVLEEPPMDRMPIQTYVMEYDE-ETVREAINRELRRGGQVYYVYN 782 Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550 ++ ++ V R L + + HG+MS+ + E+VM SF NG +L++TT+ Sbjct: 783 RV-----TDIADVALRIAKLVPD--ARVDFAHGQMSERELENVMYSFVNGDIDVLVSTTI 835 Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL 608 IE G+D+ + + +II +++ +GL+QL+QLRGR+GR + L+Y L + + RL Sbjct: 836 IETGLDISNVNTMIIHDSDRYGLSQLYQLRGRIGRSNRTAYAFLMYRKNVMLKETAEKRL 895 Query: 609 SVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665 + ++ D GF IA DL+ R G +LG +Q G + +L+ +L A K+AK Sbjct: 896 AAIREYTDLGSGFKIAMRDLELRGAGNLLGAQQHGHMNAV--GYDLYCKMLNEAVKEAKG 953 Query: 666 ILTQDPDLTSV 676 I T + TSV Sbjct: 954 IHTMEDFETSV 964 >gi|15671995|ref|NP_266169.1| transcription-repair coupling factor [Lactococcus lactis subsp. lactis Il1403] gi|12722849|gb|AAK04111.1|AE006240_9 transcription-repair coupling factor [Lactococcus lactis subsp. lactis Il1403] Length = 1161 Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 143/438 (32%), Positives = 232/438 (52%), Gaps = 25/438 (5%) Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 K D W E ++ + L +Q KK G + + ++ + Sbjct: 552 KLNDGRWRKTMSSVSKQVEDISDDLIKLYAERQAKK--GFAFSPDDTSQEEFDSGFSYVE 609 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T+ Q +I +I DM + M R+L GDVG GKT VA+ A A+ G Q ++ P +L Sbjct: 610 TEDQMRSINEIKHDMELERPMDRLLVGDVGFGKTEVAMRAAFKAINDGKQVAVLVPTTVL 669 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QH+ + N + VE+++ + + + L ++ G+ +IIGTH L ++++ Sbjct: 670 AEQHFNNFTERFINFGVNVEVLSRFQTKTQQTEILAKLKKGRVDLIIGTHRLLSKDVEFF 729 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L L+I+DE+ RFGV+ + +L + T VL +TATPIPRTL ++ LG D+S I P Sbjct: 730 DLGLMIIDEEQRFGVKHKERLKELKTQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 789 Query: 454 GRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508 R P++T ++ N D V+ +S G + Y++ +++ E+K S ++ Sbjct: 790 NRYPVQTYVMETNYGVVRDAVLRE----ISRGGQVYYVYNRVDTIEQKVSQLEELIPE-- 843 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 + I IHG+M+++ E+ + +F G +L+ATT+IE G+D+ +A+ + IENA Sbjct: 844 -------ARIGFIHGQMTEVQLENTLLAFIAGDYDVLVATTIIETGVDIPNANTLFIENA 896 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623 + GL+QL+QLRGRVGR ++ +Y P LS+ S RL +K TE GF IA Sbjct: 897 DMMGLSQLYQLRGRVGRSNRVAYAYFMYRPEKILSEVSEKRLEAIKGFTELGSGFKIAMR 956 Query: 624 DLKQRKEGEILGIKQSGM 641 DL R G +LG +QSG Sbjct: 957 DLSIRGAGNLLGSEQSGF 974 >gi|146319860|ref|YP_001199571.1| transcription-repair coupling factor [Streptococcus suis 98HAH33] gi|145690666|gb|ABP91171.1| Transcription-repair coupling factor (superfamily II helicase) [Streptococcus suis 98HAH33] Length = 845 Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 144/395 (36%), Positives = 224/395 (56%), Gaps = 23/395 (5%) Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T Q +I +I +DM + + M R+L GDVG GKT VA+ A AV G Q I+ P +L Sbjct: 295 TDDQLRSIDEIKKDMEKDSPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPTTVL 354 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 AQQHY ++ + V++++ +A + K LE++ GQ I+IGTH L + + Sbjct: 355 AQQHYANFQERFAEFPVNVDVMSRFKTKAEQEKTLEKLKKGQVDILIGTHRLLSKDVVFA 414 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L L+++DE+ RFGV+ + +L + VL +TATPIPRTL ++ LG D+S I P Sbjct: 415 DLGLLVIDEEQRFGVKHKERLKELKKKIDVLTLTATPIPRTLQMSMLGIRDLSVIETPPT 474 Query: 454 GRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNS 509 R P++T ++ N I + + R + G + Y++ +++ E+K S + +V Sbjct: 475 NRYPVQTYVMETNPSVIRDAMLR---EIDRGGQVYYLYNKVDTIEQKVSELKELVPE--- 528 Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 ++I +HG+MS+I E+ + +F G +L+ TT+IE G+D+ +A+ + IENA+ Sbjct: 529 ------ATIGYVHGQMSEIQLENTLYAFVEGEYDILVTTTIIETGVDIPNANTLFIENAD 582 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEED 624 H GL+ L+QLRGRVGR I+ L+Y P L++ + RL +K TE GF IA +D Sbjct: 583 HMGLSTLYQLRGRVGRSSRIAYAYLMYRPDKSLTEVAEKRLEAIKGFTELGSGFKIAMQD 642 Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 L R G ILG QSG + E++ LLE A Sbjct: 643 LSIRGAGNILGAAQSGFIDSV--GYEMYSQLLEQA 675 >gi|296113202|ref|YP_003627140.1| transcription-repair coupling factor [Moraxella catarrhalis RH4] gi|295920896|gb|ADG61247.1| transcription-repair coupling factor [Moraxella catarrhalis RH4] Length = 1184 Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 149/411 (36%), Positives = 228/411 (55%), Gaps = 23/411 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL ++ + + GI +++ + F T Q AI ++ DM Q M R++ Sbjct: 604 LLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQSKPMDRLIC 663 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358 GDVG GKT VA+ A AV+AG Q ++ P +LA QH + F+ ++ + I +E ++ Sbjct: 664 GDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHEDSFLNRFA-DWPIKIESLSRF 722 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + H+ L +A G I+IGTH L QD +++ +L L+I+DE+HRFGV+ + ++ Sbjct: 723 GNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMIIDEEHRFGVRHKERIKALQ 782 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER--LK 476 T L MTATPIPRTL + G DIS I PA R IKT ++P + DE I+ L+ Sbjct: 783 TNIDSLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFLLP--KSDETIKEAILR 840 Query: 477 VVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534 +L G + Y++ + E R +V + +A+ HG+M++ + VM Sbjct: 841 EIL-RGGQVYYLHNDVASIEAAADTLRELVGE---------ARVAVAHGQMNERELSVVM 890 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 + F + +L+A+T+IE GIDV +A+ III A+ FG+AQLHQLRGRVGR + C L Sbjct: 891 NDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQLRGRVGRSHHQAYCYL 950 Query: 595 LYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 + LS ++ RL+ + GF++A EDL+ R GEILG +QSG Sbjct: 951 MVPSLKGLSSDAKKRLNAITRANTLGAGFMLASEDLEIRGAGEILGKEQSG 1001 >gi|326571030|gb|EGE21054.1| transcription-repair coupling factor [Moraxella catarrhalis BC7] Length = 1184 Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 149/412 (36%), Positives = 228/412 (55%), Gaps = 25/412 (6%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL ++ + + GI +++ + F T Q AI ++ DM Q M R++ Sbjct: 604 LLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQNKPMDRLIC 663 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358 GDVG GKT VA+ A AV+AG Q ++ P +LA QH + F+ ++ + I +E ++ Sbjct: 664 GDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHEDSFLNRFA-DWPIKIESLSRF 722 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + H+ L +A G I+IGTH L QD +++ +L L+I+DE+HRFGV+ + ++ Sbjct: 723 GNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMIIDEEHRFGVRHKERIKALQ 782 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 T L MTATPIPRTL + G DIS I PA R IKT ++P + DE I+ + + Sbjct: 783 TNIDSLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFLLP--KSDETIK--EAI 838 Query: 479 LSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 L E G + Y++ + E R +V + +A+ HG+M++ + V Sbjct: 839 LREILRGGQVYYLHNDVASIEAAADTLRELVGE---------ARVAVAHGQMNERELSVV 889 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M+ F + +L+A+T+IE GIDV +A+ III A+ FG+AQLHQLRGRVGR + C Sbjct: 890 MNDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQLRGRVGRSHHQAYCY 949 Query: 594 LLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 L+ LS ++ RL+ + GF++A EDL+ R GEILG +QSG Sbjct: 950 LMVPSLKGLSSDAKKRLNAITRANTLGAGFMLASEDLEIRGAGEILGKEQSG 1001 >gi|160914796|ref|ZP_02077010.1| hypothetical protein EUBDOL_00803 [Eubacterium dolichum DSM 3991] gi|158433336|gb|EDP11625.1| hypothetical protein EUBDOL_00803 [Eubacterium dolichum DSM 3991] Length = 1143 Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 143/430 (33%), Positives = 232/430 (53%), Gaps = 21/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ LA ++ L ++ + IG + + ++ ++ ++ + T Q Sbjct: 550 EWEKTKRKVSEKIAQLAQRLVHLYASRE--EHIGFAFSKDSELQKQFEQDFDYELTHDQA 607 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 A+K+I QDM M R+L GDVG GKT VA A AV Q + P IL+ QHY Sbjct: 608 RAVKEIKQDMESSKPMDRLLCGDVGFGKTEVAARAAFKAVVDNKQVAFLCPTTILSLQHY 667 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + +N + +E+I +P A +++ +E I G I+IGTH L IQ+ L L+ Sbjct: 668 KTFTRRFENYPVRIEVINRFIPMAKQKQIMEDIKAGSIDILIGTHRLLSKDIQFQDLGLL 727 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 ++DE+ RFGV+ + K+ + VL ++ATPIPRTL ++ +G +S++ P R P+ Sbjct: 728 VIDEEQRFGVEHKEKIKEFKNTVDVLSLSATPIPRTLQMSLIGIRSLSQLNTPPQNRMPV 787 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T +I N I E+I+R L+ + +++ +N + + L E Sbjct: 788 QTYVIEKNFAMIKEIIQR---ELARNGQVFYLY--------NNVKEIYNVARKLREALPD 836 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 I + HG+MS D E VM F ++L+ TT+IE GID+ +A+ I+I+ A+HFGLAQ Sbjct: 837 VEIGVAHGQMSREDIEDVMLQFTENHYQVLVCTTIIETGIDIPNANTILIDEADHFGLAQ 896 Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKE 630 L+Q++GRVGR + ++ L+Y P LS+ + RL +K G+ IA DL R Sbjct: 897 LYQIKGRVGRSDRLAYAYLMYSPQRQLSEIAMKRLKSIKEFTQLGSGYKIAMRDLTIRGA 956 Query: 631 GEILGIKQSG 640 G++LG +Q+G Sbjct: 957 GDMLGPQQAG 966 >gi|302757661|ref|XP_002962254.1| hypothetical protein SELMODRAFT_77276 [Selaginella moellendorffii] gi|300170913|gb|EFJ37514.1| hypothetical protein SELMODRAFT_77276 [Selaginella moellendorffii] Length = 704 Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 141/385 (36%), Positives = 219/385 (56%), Gaps = 16/385 (4%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQ-KNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 K P++PT Q A D+ +D++ + M R++ GDVG GKT VA+ A+ AV A Sbjct: 142 KFAGKFPYTPTPDQIKAFLDVERDLTDAETPMDRLICGDVGFGKTEVAMRAIFYAVSAKK 201 Query: 323 QAVIMAPIGILAQQHYEFIK-KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q +++AP +LA+QH+E IK ++ I V +++ RR + I G +I +G Sbjct: 202 QVMVLAPTTVLAKQHHESIKERFANFPDIKVALLSRFQNNVDRRAVIAGINDGVVNIAVG 261 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH+L ++IQY K+ L++VDE+ RFGV Q+ K++ T +L ++ATPIPRTL + G Sbjct: 262 THSLLGNNIQYEKVGLLVVDEEQRFGVAQKEKISTLKTTVDILTLSATPIPRTLHMALSG 321 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S +T P R+PIKT + ++ D V + +K L + +++ P+I + N Sbjct: 322 FRDASLMTTPPPERRPIKTHVCVYSQ-DMVKDAIKAELDRQGQVFYVVPRI----QGNME 376 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 S ++ L SIA HG+ + E+ M F +L+ T +IE G+D+ + Sbjct: 377 STEKKLKLLVPGVQVSIA--HGKKCATELEATMTKFTEKGTSILLCTNIIESGLDIPTVN 434 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNT---E 615 II+EN + FGLAQ++QLRGRVGR ++++ +L HPP LS ++ RLS L++ Sbjct: 435 TIIVENVQMFGLAQIYQLRGRVGRADKVAHAYML-HPPKDFLSSDALERLSALEDCCALG 493 Query: 616 DGFLIAEEDLKQRKEGEILGIKQSG 640 GF +AE D+ R G I G KQSG Sbjct: 494 QGFQLAERDMAIRGIGSIFGEKQSG 518 >gi|224475645|ref|YP_002633251.1| putative transcription-repair coupling factor [Staphylococcus carnosus subsp. carnosus TM300] gi|222420252|emb|CAL27066.1| putative transcription-repair coupling factor [Staphylococcus carnosus subsp. carnosus TM300] Length = 1172 Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 215/382 (56%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM ++ M R+L GDVG GKT VAL A AV G Q + Sbjct: 616 DFPYDLTADQSKSIVEIKDDMEKERPMDRLLCGDVGYGKTEVALRAAFKAVMEGKQVAFL 675 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +E+++ ++ + + G I++GTH L Sbjct: 676 VPTTILAQQHYETLIERMQDFPVNIELMSRFRTPKEVKETKKGLEDGTVDIVVGTHKLLA 735 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 ++Y L L++VDE+ RFGV+ + ++ T VL +TATPIPRTL ++ LG D+S Sbjct: 736 KDVKYKDLGLLVVDEEQRFGVRHKERIKSLKTNVDVLTLTATPIPRTLHMSMLGVRDLSV 795 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS G +A+++ +++ S+ E Sbjct: 796 IETPPENRFPVQTYVLEQNSNFIKEALER---ELSRGGQAFYLYNKVQ--------SIYE 844 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++I + HGRM++ + E M F +G +L+ TT+IE G+DV +A+ +I Sbjct: 845 KKEQLQMLMPEANIGVAHGRMTERELEDTMIGFVDGEYDILVTTTIIETGVDVPNANTLI 904 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE+A+ FGL+QL+QLRGRVGR + L HP LS+ + RL +K TE GF Sbjct: 905 IEDADRFGLSQLYQLRGRVGRSSRVGYAYFL-HPTNKVLSETAEERLQAIKEFTELGSGF 963 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 IA DL R G +LG +Q G Sbjct: 964 KIAMRDLNIRGAGNLLGKQQHG 985 >gi|167623544|ref|YP_001673838.1| transcription-repair coupling factor [Shewanella halifaxensis HAW-EB4] gi|167353566|gb|ABZ76179.1| transcription-repair coupling factor [Shewanella halifaxensis HAW-EB4] Length = 1157 Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 140/383 (36%), Positives = 215/383 (56%), Gaps = 23/383 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T QE++I +L+DM M R++ GDVG GKT VA+ A AV G Q I+ Sbjct: 604 SFPYEETVDQETSINAVLEDMRSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVAIL 663 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHYE K + +E+++ + + ++ + +G+ I+IGTH L Q Sbjct: 664 VPTTLLAQQHYENFKDRFADWPFKIEVMSRFKTAKEQTQVMKDLLNGKVDIVIGTHKLLQ 723 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 ++ L L+++DE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 724 SEAKFENLGLLVIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSI 783 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502 I PA R +KT + DE R + +L E G + Y++ +E EK+ + Sbjct: 784 IATPPAKRLAVKTF---VREYDEATIR-EALLREILRGGQVYFLHNSVETIEKRAAEISE 839 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 ++ + + HG+M + + E VM F + +L+ TT+IE GIDV A+ Sbjct: 840 LLPE---------ARVVTAHGQMRERELERVMSDFYHQRFNVLVCTTIIETGIDVPSANT 890 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED---G 617 I+IE A++FGLAQLHQLRGRVGR + L+ HP ++K++ RL + ED G Sbjct: 891 IVIERADNFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTKDARKRLEAIGALEDLGAG 950 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F++A +DL+ R GE+LG +QSG Sbjct: 951 FMLATQDLEIRGAGELLGDEQSG 973 >gi|158337270|ref|YP_001518445.1| transcription-repair coupling factor [Acaryochloris marina MBIC11017] gi|158307511|gb|ABW29128.1| transcription-repair coupling factor [Acaryochloris marina MBIC11017] Length = 1164 Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 140/410 (34%), Positives = 226/410 (55%), Gaps = 17/410 (4%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 + LL + Q ++ G ++ +++ + P+ PT Q A +D+ +DM M R+ Sbjct: 577 VDLLKLYAQRAQQEGFTFPLDQPWQEEMEDSFPYQPTADQLKAAQDVKRDMENPRPMDRL 636 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 + GDVG GKT VA A+ AV AG Q +AP IL QQHY +K+ I + ++ Sbjct: 637 VCGDVGFGKTEVATRAVFKAVTAGKQVAFLAPTTILTQQHYHTLKERFAPYPIQIGLLNR 696 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 R+ R+ G+ I++GTH L S+ + L L+++DE+ RFGV Q+ K+ Sbjct: 697 FRSAEERKDIQNRLKTGELDIVVGTHQLLGKSVNFRDLGLLVIDEEQRFGVNQKEKIKTL 756 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 T VL ++ATPIPRTL + G ++S IT P R+PIKT + P + + + ++ Sbjct: 757 KTQVDVLTLSATPIPRTLYMALSGVREMSLITTPPPSRRPIKTHLSPYD-PESIRSAVRQ 815 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDS 536 L G + +++ P++E + E L E S+ IAI HG+M + + E+ M + Sbjct: 816 ELDRGGQIFYVVPRVE--------GIEEVAGKLREMVPSARIAIAHGQMVEGELEATMLT 867 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F NG ++L+ TT+IE G+D+ + I+IE+A+ FGL+QL+QLRGRVGR I + L+ Sbjct: 868 FSNGDAEILVCTTIIESGLDIPRVNTILIEDAQKFGLSQLYQLRGRVGRA-GIQAHAWLF 926 Query: 597 HP---PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640 +P L++ + RL L+ G+ +A D++ R G +LG +QSG Sbjct: 927 YPNQSSLTEKARKRLRALQEFSQLGSGYQLAVRDMEIRGVGNLLGAEQSG 976 >gi|319757180|gb|ADV69122.1| transcription-repair coupling factor [Streptococcus suis JS14] Length = 1164 Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 139/377 (36%), Positives = 216/377 (57%), Gaps = 21/377 (5%) Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T Q +I +I +DM + + M R+L GDVG GKT VA+ A AV G Q I+ P +L Sbjct: 614 TDDQLRSIDEIKKDMEKDSPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPTTVL 673 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 AQQHY ++ + V++++ +A + K LE++ GQ I+IGTH L + + Sbjct: 674 AQQHYANFQERFAEFPVNVDVMSRFKTKAEQEKTLEKLKKGQVDILIGTHRLLSKDVVFA 733 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L L+++DE+ RFGV+ + +L + VL +TATPIPRTL ++ LG D+S I P Sbjct: 734 DLGLLVIDEEQRFGVKHKERLKELKKKIDVLTLTATPIPRTLQMSMLGIRDLSVIETPPT 793 Query: 454 GRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNS 509 R P++T ++ N I + + R + G + Y++ +++ E+K S + +V Sbjct: 794 NRYPVQTYVMETNPSVIRDAMLR---EIDRGGQVYYLYNKVDTIEQKVSELKELVPE--- 847 Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 ++I +HG+MS+I E+ + +F G +L+ TT+IE G+D+ +A+ + IENA+ Sbjct: 848 ------ATIGYVHGQMSEIQLENTLYAFVEGEYDILVTTTIIETGVDIPNANTLFIENAD 901 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEED 624 H GL+ L+QLRGRVGR I+ L+Y P L++ + RL +K TE GF IA +D Sbjct: 902 HMGLSTLYQLRGRVGRSSRIAYAYLMYRPDKSLTEVAEKRLEAIKGFTELGSGFKIAMQD 961 Query: 625 LKQRKEGEILGIKQSGM 641 L R G ILG QSG Sbjct: 962 LSIRGAGNILGAAQSGF 978 >gi|146317670|ref|YP_001197382.1| transcription-repair coupling factor [Streptococcus suis 05ZYH33] gi|253750931|ref|YP_003024072.1| transcription-repair coupling factor [Streptococcus suis SC84] gi|253752830|ref|YP_003025970.1| transcription-repair coupling factor [Streptococcus suis P1/7] gi|253754655|ref|YP_003027795.1| transcription-repair coupling factor [Streptococcus suis BM407] gi|145688476|gb|ABP88982.1| Transcription-repair coupling factor (superfamily II helicase) [Streptococcus suis 05ZYH33] gi|251815220|emb|CAZ50784.1| putative transcription-repair coupling factor [Streptococcus suis SC84] gi|251817119|emb|CAZ54840.1| putative transcription-repair coupling factor [Streptococcus suis BM407] gi|251819075|emb|CAR44089.1| putative transcription-repair coupling factor [Streptococcus suis P1/7] gi|292557472|gb|ADE30473.1| Transcription-repair coupling factor [Streptococcus suis GZ1] Length = 1164 Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 139/377 (36%), Positives = 216/377 (57%), Gaps = 21/377 (5%) Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T Q +I +I +DM + + M R+L GDVG GKT VA+ A AV G Q I+ P +L Sbjct: 614 TDDQLRSIDEIKKDMEKDSPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPTTVL 673 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 AQQHY ++ + V++++ +A + K LE++ GQ I+IGTH L + + Sbjct: 674 AQQHYANFQERFAEFPVNVDVMSRFKTKAEQEKTLEKLKKGQVDILIGTHRLLSKDVVFA 733 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L L+++DE+ RFGV+ + +L + VL +TATPIPRTL ++ LG D+S I P Sbjct: 734 DLGLLVIDEEQRFGVKHKERLKELKKKIDVLTLTATPIPRTLQMSMLGIRDLSVIETPPT 793 Query: 454 GRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNS 509 R P++T ++ N I + + R + G + Y++ +++ E+K S + +V Sbjct: 794 NRYPVQTYVMETNPSVIRDAMLR---EIDRGGQVYYLYNKVDTIEQKVSELKELVPE--- 847 Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 ++I +HG+MS+I E+ + +F G +L+ TT+IE G+D+ +A+ + IENA+ Sbjct: 848 ------ATIGYVHGQMSEIQLENTLYAFVEGEYDILVTTTIIETGVDIPNANTLFIENAD 901 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEED 624 H GL+ L+QLRGRVGR I+ L+Y P L++ + RL +K TE GF IA +D Sbjct: 902 HMGLSTLYQLRGRVGRSSRIAYAYLMYRPDKSLTEVAEKRLEAIKGFTELGSGFKIAMQD 961 Query: 625 LKQRKEGEILGIKQSGM 641 L R G ILG QSG Sbjct: 962 LSIRGAGNILGAAQSGF 978 >gi|256846696|ref|ZP_05552152.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_36A2] gi|256717916|gb|EEU31473.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_36A2] Length = 981 Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 141/377 (37%), Positives = 219/377 (58%), Gaps = 17/377 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF+ T +Q AI+D+ +DM M R++ GDVG GKT VA+ A AV G Q +++ P Sbjct: 452 PFTETPAQSKAIEDVKRDMESGKVMDRLICGDVGFGKTEVAIRATFKAVMDGKQVILLVP 511 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHYE + +N + +EI++ + + ++L+RI +G A ++IGTH L D Sbjct: 512 TTVLAEQHYERFSERFKNYPVHIEILSRVQSKKEQTESLKRIENGSADLVIGTHRLLSDD 571 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ + L+I+DE+ +FGV+ + KL + VL +TATPIPRTL L+ LG D+S I Sbjct: 572 IKFKDVGLLIIDEEQKFGVKAKEKLKKIKGNIDVLTLTATPIPRTLNLSLLGIRDLSVID 631 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 P GR+ I T I N+ I ++I L + EG + ++I ++ E K R ++ Sbjct: 632 TSPEGRQKIHTEYIDNNKNLIKDII--LSEISREG-QVFYIFNSVKMIESKVKEIRELLP 688 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + + IHG+M D + + F+NG +L+ATT+IE GID+ +A+ +II Sbjct: 689 EY--------IKVGYIHGQMLPRDIKKNIQEFENGNIDVLVATTIIENGIDIENANTMII 740 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEE 623 E E GL+Q++QLRGR+GR + S C +L + +KN+ R ++ + G +A E Sbjct: 741 EGVEKLGLSQVYQLRGRIGRSTKKSYCYMLMNENKTKNAKKREKSIREFDSLTGLDLAME 800 Query: 624 DLKQRKEGEILGIKQSG 640 D K R GEILG KQ G Sbjct: 801 DSKIRGVGEILGEKQHG 817 >gi|119512690|ref|ZP_01631763.1| transcriptional-repair coupling factor [Nodularia spumigena CCY9414] gi|119462657|gb|EAW43621.1| transcriptional-repair coupling factor [Nodularia spumigena CCY9414] Length = 1164 Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 135/382 (35%), Positives = 217/382 (56%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q A++D+ +DM M R++ GDVG GKT VA+ A+ AV +G Q ++ Sbjct: 612 SFPYQATTDQLKAVQDVKRDMESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTSGKQVALL 671 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 AP IL QQHY +K+ + + ++ RR +R+A G+ I++GTH L Sbjct: 672 APTTILTQQHYHTLKERFAPYPVNIGLLNRFRSAEERRTIQKRLATGELDIVVGTHQLLG 731 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 ++ + L L++VDE+ RFGV Q+ K+ T VL ++ATPIPRTL ++ G ++S Sbjct: 732 KNVSFRDLGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSLSGIREMSL 791 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504 IT P R+PIKT + P++ E++ ++ L G + +++ P++E E+ +N R ++ Sbjct: 792 ITTPPPTRRPIKTHLAPLS--PEIVRSAIRQELDRGGQVFYVVPRVEGIEELTANLREMI 849 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 AI HGR+ + + ES M +F NG +L+ TT+IE G+D+ + I+ Sbjct: 850 P---------GGKFAIAHGRLDESELESTMLTFSNGDADILVCTTIIESGLDIPRVNTIL 900 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLK---NTEDGF 618 IE+A FGL+QL+QLRGRVGR I + L++P LS + RL ++ G+ Sbjct: 901 IEDAHRFGLSQLYQLRGRVGRA-GIQAHAWLFYPKQRTLSDAARQRLRAIQEFTQLGSGY 959 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 +A D++ R G +LG +QSG Sbjct: 960 QLAMRDMEIRGVGNLLGAEQSG 981 >gi|226355564|ref|YP_002785304.1| transcription-repair coupling factor [Deinococcus deserti VCD115] gi|226317554|gb|ACO45550.1| putative transcription-repair coupling factor [Deinococcus deserti VCD115] Length = 1041 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 150/442 (33%), Positives = 241/442 (54%), Gaps = 31/442 (7%) Query: 219 EWTSPARERLAYD-ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 +W A+ER + E +AG++ + +Q P E ++I +N F T Q Sbjct: 439 DWAK-AKERARKNAEEVAGKLLVQYAARQVTPGNAFPPQPEWD--EQIEQNFKFELTSDQ 495 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + ++K+ ++D+ + N R++ GDVG GKT VAL A V G Q I+ P +LA+QH Sbjct: 496 KISLKETMRDLEKPNPADRLISGDVGFGKTEVALRAAHRVVGHGRQVAILVPTTLLAEQH 555 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 + + + VE ++ R L + G+ I+IGTH L I++ L L Sbjct: 556 TSTFVERFKGLPVRVEGLSRFTSPQQARSILNDLKAGKVDILIGTHRLLSGDIEFKDLGL 615 Query: 398 VIVDEQHRFGVQQ----------------RLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 +IVDE+HRFGV Q +L+L +A A L ++ATPIPRTL ++ +G Sbjct: 616 IIVDEEHRFGVSQKEKLRALRGLPAMTDGKLELPPEARAVDTLALSATPIPRTLYMSMVG 675 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D+S I P GRKPI+T++ P + + V + + + G K ++I +I R Sbjct: 676 LRDMSSIQTPPKGRKPIQTILAPFDPV-TVRDAILNEIERGGKVFYIHDRI---ASIGAR 731 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 S+ R N + E + I + HGRM++ + E +M F+ G +L++TT++E G+D+ +A+ Sbjct: 732 SLYLR-NLVPE---ARIGVAHGRMNEEELEEIMLGFEQGAFDVLLSTTIVETGLDIPEAN 787 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 I+IE A+ GLAQL+QLRGRVGR + + L Y P +++N+ RL + + +D G Sbjct: 788 TILIERADRLGLAQLYQLRGRVGRRAQTAYAYLFYPPRMTENAQRRLWAIADLQDLGSGH 847 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 L+AE+D++ R G ILG +Q G Sbjct: 848 LLAEKDMEIRGVGNILGEEQHG 869 >gi|56750236|ref|YP_170937.1| transcription-repair coupling factor [Synechococcus elongatus PCC 6301] gi|56685195|dbj|BAD78417.1| transcription-repair coupling factor [Synechococcus elongatus PCC 6301] Length = 1153 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 148/447 (33%), Positives = 242/447 (54%), Gaps = 20/447 (4%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 + LL + Q ++ G + Q++ + P+ PT Q A++ + +DM M R+ Sbjct: 570 VDLLKLYAQRSQQEGHAYPPDQPWQQELEESFPYQPTADQLKAVEAVKRDMESPQPMDRL 629 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 + GDVG GKT VA+ A+ AV AG Q ++AP IL QQHY +K+ I + ++ Sbjct: 630 VCGDVGFGKTEVAVRAIFKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYPIQIGLLNR 689 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 + R+ +R+A G+ +++GT L Q+ L L++VDE+ RFGV Q+ K+ Sbjct: 690 FRTASERQNIQQRLATGELDVVVGTQQLLSKGTQFRDLGLLVVDEEQRFGVNQKEKIKAL 749 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 T VL ++ATPIPRTL + G ++S IT P R+PIKT ++P + ++ V + Sbjct: 750 KTQVDVLTLSATPIPRTLYMALSGVREMSLITTPPPSRRPIKTHLMPYD-LEAVRTAISQ 808 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536 + G + +++ P++E ++ R L E S IA+ HG+M + + E+ M + Sbjct: 809 EIDRGGQVFYVVPRVE-----GIEAIATR---LQEMLPSLRIAVAHGQMPEGELEATMLA 860 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F N ++I TT+IE G+D+ + I+IE+A+ FGL+QL+QLRGRVGR I + L+ Sbjct: 861 FNNNEADVMICTTIIESGLDIPRVNTILIEDAQRFGLSQLYQLRGRVGRA-GIQAHAWLF 919 Query: 597 HPP---LSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIA 647 +P LS + RL ++ G+ +A DL+ R G +LG++QSG + F + Sbjct: 920 YPGETVLSDQARQRLRAIQEFTQLGSGYQLAMRDLEIRGVGNLLGVEQSGQMEAIGFDLY 979 Query: 648 QPELHDSLLEIARKDAKHILTQDPDLT 674 L +SL EI +D + DL+ Sbjct: 980 MEMLQESLQEIRGQDIPQVDDTQIDLS 1006 >gi|325568171|ref|ZP_08144612.1| transcription-repair coupling factor [Enterococcus casseliflavus ATCC 12755] gi|325158372|gb|EGC70523.1| transcription-repair coupling factor [Enterococcus casseliflavus ATCC 12755] Length = 1172 Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 141/431 (32%), Positives = 237/431 (54%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ A E +A + LL +++ +K G + ++ P+S T Q Sbjct: 568 EWAKTKRKVTAKIEDIADDLILLYAKRESEK--GYAFQPDDAYQKEFEDAFPYSETDDQL 625 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I +DM ++ M R+L GDVG GKT VAL A A++ Q + P ILAQQHY Sbjct: 626 RSTAEIKRDMEKEKPMDRLLVGDVGFGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 685 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + + + V +++ + + + +E++ GQ I++GTH L +++ L L+ Sbjct: 686 ETMVDRFEGFPVNVGVLSRFRTKKQQNETIEQVRKGQVDILVGTHRLLSKDVEFADLGLL 745 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 ++DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 746 VIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 805 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ +N + E I+R ++ G + +++ +++ E+K +++V Sbjct: 806 QTYVMEMNPGAVREAIQR---EMARGGQVFYLYNRVDTIERKVEELQALVP--------- 853 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA HG+M++I E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 854 DARIAYAHGQMTEIQLENTLFDFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLS 913 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 914 TLYQLRGRVGRSNRVAYAYFMYEQQKVLNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRG 973 Query: 630 EGEILGIKQSG 640 G +LG +Q G Sbjct: 974 AGNLLGAQQHG 984 >gi|294650684|ref|ZP_06728038.1| transcription-repair coupling factor TRCF [Acinetobacter haemolyticus ATCC 19194] gi|292823475|gb|EFF82324.1| transcription-repair coupling factor TRCF [Acinetobacter haemolyticus ATCC 19194] Length = 1153 Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 147/428 (34%), Positives = 228/428 (53%), Gaps = 19/428 (4%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W+ R+ L +A ++ + R+Q K G ++ + + T Q + Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFAFELDHIAYMQFASGFAYEETLDQAN 612 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI+ L DM M R++ GDVG GKT VA+ A AV+ Q ++ P +LAQQHYE Sbjct: 613 AIEATLHDMQLAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNAKQVAVLVPTTLLAQQHYE 672 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 K +T + +E+++ K +E +A G+ I++GTH + Q++IQ+ L L+I Sbjct: 673 SFKDRFADTAVRIEVLSRFGSNKAHLKIIEDLADGKVDIVVGTHKILQENIQFNNLGLMI 732 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 VDE+HRFGV+ + ++ +L +TATPIPRTL + G D+S I PA R +K Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792 Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSS 517 T + + D + E + L G + Y++ ++E E+ N R +V + Sbjct: 793 T-FVQEHTDDSIKEAILRELLRGGQVYFLHNEVETIERAAENIRHLVPE---------AR 842 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 +A+ HG+M + + E VM F + +L+ +T+IE GIDV +A+ IIIE A+ GLAQLH Sbjct: 843 VAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTIIIERADKLGLAQLH 902 Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632 QLRGRVGR + LL L ++ RL ++ GF++A EDL+ R GE Sbjct: 903 QLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGE 962 Query: 633 ILGIKQSG 640 +LG +QSG Sbjct: 963 LLGEQQSG 970 >gi|262372249|ref|ZP_06065528.1| transcription-repair coupling factor [Acinetobacter junii SH205] gi|262312274|gb|EEY93359.1| transcription-repair coupling factor [Acinetobacter junii SH205] Length = 1153 Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 146/429 (34%), Positives = 231/429 (53%), Gaps = 21/429 (4%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W+ R+ L +A ++ + R+Q K G +++ + + T Q + Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFAFDLDHTAYMQFASGFAYEETLDQAN 612 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI+ L DM M R++ GDVG GKT VA+ A AV+ Q ++ P +LAQQHYE Sbjct: 613 AIESTLHDMQLAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNNKQVAVLVPTTLLAQQHYE 672 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 K +T + +E+++ K +E +A G+ I++GTH + Q+++Q+ L L+I Sbjct: 673 SFKDRFADTAVRIEVLSRFGSNKTHLKIIEDLADGKVDIVVGTHKILQENVQFKNLGLMI 732 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 VDE+HRFGV+ + ++ +L +TATPIPRTL + G D+S I PA R +K Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792 Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSS 517 T + + D V E + L G + Y++ +++ E+ + R++V + Sbjct: 793 T-FVQEHTDDSVKEAILRELLRGGQVYFLHNEVDTIERAAESIRTLVPE---------AR 842 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 +A+ HG+M + + E VM F + +L+ +T+IE GIDV +A+ IIIE A+ GLAQLH Sbjct: 843 VAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTIIIERADKLGLAQLH 902 Query: 578 QLRGRVGRGEEISSCILLYHPPLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 QLRGRVGR + LL P L ++ RL ++ GF++A EDL+ R G Sbjct: 903 QLRGRVGRSHHQAYAYLLV-PSLKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAG 961 Query: 632 EILGIKQSG 640 E+LG +QSG Sbjct: 962 ELLGEQQSG 970 >gi|262275596|ref|ZP_06053405.1| transcription-repair coupling factor [Grimontia hollisae CIP 101886] gi|262219404|gb|EEY70720.1| transcription-repair coupling factor [Grimontia hollisae CIP 101886] Length = 1154 Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 146/382 (38%), Positives = 212/382 (55%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q+ AI +L DM Q M R++ GDVG GKT VA+ A AV Q ++ Sbjct: 601 GFPFEETADQKQAINAVLSDMCQPIAMDRLVCGDVGFGKTEVAMRAAFLAVNNSKQVAVL 660 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N + VE+++ ++ L +A G+ I+IGTH L Q Sbjct: 661 VPTTLLAQQHFENFRDRFANQPVRVEVLSRFKSAKEQKLILADVAEGKVDILIGTHKLLQ 720 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + ++ L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 721 SDVIFHDLGLLIVDEEHRFGVRQKEKVKAMRANVDILTLTATPIPRTLNMAMSGMRDLSI 780 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVV 504 I P+ R IKT + R +I + VL E G + Y++ I+ S+ Sbjct: 781 IATPPSRRLAIKTFV--RERESSLIR--EAVLREIMRGGQVYFLHNDID--------SIE 828 Query: 505 ERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + N L E + I + HG+M + + E +M F + +L+ TT+IE GIDV A+ I Sbjct: 829 KTANELAELVPEARITVAHGQMRERELERIMSDFYHQRFNVLVCTTIIETGIDVPTANTI 888 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED---GF 618 I++ A+H GLAQLHQLRGRVGR + LL HP ++K++ RL + + ED GF Sbjct: 889 IMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAVKRLEAIASLEDLGAGF 948 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG +QSG Sbjct: 949 TLATHDLEIRGAGELLGDEQSG 970 >gi|90413103|ref|ZP_01221100.1| putative transcription-repair coupling factor [Photobacterium profundum 3TCK] gi|90325946|gb|EAS42392.1| putative transcription-repair coupling factor [Photobacterium profundum 3TCK] Length = 1151 Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 139/382 (36%), Positives = 211/382 (55%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI +L DM Q M R++ GDVG GKT VA+ A A++ Q ++ Sbjct: 600 GFPFEETHDQALAINSVLSDMCQPRAMDRLVCGDVGFGKTEVAMRAAFVAIDNNKQVTVL 659 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + NT + VE+++ +++ + G+ I+IGTH L Sbjct: 660 VPTTLLAQQHFENFRDRFANTAVRVEVLSRFKTAKEQKQVMLDAEDGKIDILIGTHKLLN 719 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 S++Y+ L L++VDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 720 ASVKYHDLGLLVVDEEHRFGVRQKEKIKAIRADIDILTLTATPIPRTLNMAMSGMRDLSI 779 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503 I PA R IKT + D+ I R V+ ++ G + Y++ +++ EK + Sbjct: 780 IATPPARRLAIKTF---VRERDDAIVREAVLREITRGGQVYFLHNEVDSIEKTTEELAKL 836 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + + I HG+M + + E VM F + LL+ TT+IE GID+ A+ I Sbjct: 837 IPE---------ARITFAHGQMRERELEKVMGDFYHQRFNLLVCTTIIETGIDIPTANTI 887 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GF 618 I+ A++ GLAQLHQLRGRVGR + LL + ++K++ RL +++ ED GF Sbjct: 888 IMNRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHKKRMTKDAVKRLEAIESLEDLGAGF 947 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG +QSG Sbjct: 948 TLATHDLEIRGAGELLGDEQSG 969 >gi|302388384|ref|YP_003824206.1| transcription-repair coupling factor [Clostridium saccharolyticum WM1] gi|302199012|gb|ADL06583.1| transcription-repair coupling factor [Clostridium saccharolyticum WM1] Length = 1179 Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 140/390 (35%), Positives = 216/390 (55%), Gaps = 16/390 (4%) Query: 258 EGKIAQKILRNI-PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316 E + QK + P+ T+ Q AI+ DM + M R++ GDVG GKT +AL A Sbjct: 615 EDTVWQKEFEEMFPYEETEDQWDAIESTKSDMESRKIMDRLICGDVGYGKTEIALRAAFK 674 Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376 AV+ G Q V + P ILAQQHY + ++ + V++++ +K LE + G Sbjct: 675 AVQDGKQVVYLVPTTILAQQHYNTFAQRMKDFPVRVDLMSRFRTPGQMKKTLEDLKRGMV 734 Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436 I+IGTH + +Q+ L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL Sbjct: 735 DIVIGTHRVLSKDVQFKDLGLLIIDEEQRFGVAHKEKIKQLKENVDVLTLTATPIPRTLH 794 Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEK 495 ++ +G D+S + E P R PI+T ++ N DE++ E + LS G + Y++ ++ Sbjct: 795 MSLVGIRDMSVLEEPPVDRMPIQTYVMEYN--DEMVREAIHRELSRGGQVYYVYNRV--- 849 Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555 SN V + L +++ HG+M + + E +M F NG +L+ TT+IE G+ Sbjct: 850 --SNIDEVANHISGLVPE--AAVTFAHGQMHEHELERIMFDFVNGEIDVLVCTTIIETGL 905 Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN 613 D+ +A+ +II++A+H GL+QL+QLRGRVGR S L+Y L + + RL ++ Sbjct: 906 DIPNANTMIIQDADHMGLSQLYQLRGRVGRSSRTSYAFLMYKRDKLLKEEAEKRLQAIRE 965 Query: 614 -TE--DGFLIAEEDLKQRKEGEILGIKQSG 640 TE G IA DL+ R G +LG +Q G Sbjct: 966 FTELGSGIKIAMRDLEIRGAGNVLGAEQHG 995 >gi|257877903|ref|ZP_05657556.1| transcription-repair coupling factor [Enterococcus casseliflavus EC20] gi|257812069|gb|EEV40889.1| transcription-repair coupling factor [Enterococcus casseliflavus EC20] Length = 1172 Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 141/431 (32%), Positives = 237/431 (54%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ A E +A + LL +++ +K G + ++ P+S T Q Sbjct: 568 EWAKTKRKVTAKIEDIADDLILLYAKRESEK--GYAFQPDDAYQKEFEDAFPYSETDDQL 625 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I +DM ++ M R+L GDVG GKT VAL A A++ Q + P ILAQQHY Sbjct: 626 RSTAEIKRDMEKEKPMDRLLVGDVGFGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 685 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + + + V +++ + + + +E++ GQ I++GTH L +++ L L+ Sbjct: 686 ETMVDRFEGFPVNVGVLSRFRTKKQQNETIEQVRKGQVDILVGTHRLLSKDVEFADLGLL 745 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 ++DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 746 VIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 805 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ +N + E I+R ++ G + +++ +++ E+K +++V Sbjct: 806 QTYVMEMNPGAVREAIQR---EMARGGQVFYLYNRVDTIERKVEELQALVP--------- 853 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA HG+M++I E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 854 DARIAYAHGQMTEIQLENTLFDFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLS 913 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 914 TLYQLRGRVGRSNRVAYAYFMYEQQKVLNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRG 973 Query: 630 EGEILGIKQSG 640 G +LG +Q G Sbjct: 974 AGNLLGAQQHG 984 >gi|257868298|ref|ZP_05647951.1| transcription-repair coupling factor [Enterococcus casseliflavus EC30] gi|257874429|ref|ZP_05654082.1| transcription-repair coupling factor [Enterococcus casseliflavus EC10] gi|257802412|gb|EEV31284.1| transcription-repair coupling factor [Enterococcus casseliflavus EC30] gi|257808593|gb|EEV37415.1| transcription-repair coupling factor [Enterococcus casseliflavus EC10] Length = 1172 Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 141/431 (32%), Positives = 237/431 (54%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ A E +A + LL +++ +K G + ++ P+S T Q Sbjct: 568 EWAKTKRKVTAKIEDIADDLILLYAKRESEK--GYAFQPDDAYQKEFEDAFPYSETDDQL 625 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I +DM ++ M R+L GDVG GKT VAL A A++ Q + P ILAQQHY Sbjct: 626 RSTAEIKRDMEKEKPMDRLLVGDVGFGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 685 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + + + V +++ + + + +E++ GQ I++GTH L +++ L L+ Sbjct: 686 ETMVDRFEGFPVNVGVLSRFRTKKQQNETIEQVRKGQVDILVGTHRLLSKDVEFADLGLL 745 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 ++DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 746 VIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 805 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ +N + E I+R ++ G + +++ +++ E+K +++V Sbjct: 806 QTYVMEMNPGAVREAIQR---EMARGGQVFYLYNRVDTIERKVEELQALVP--------- 853 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA HG+M++I E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 854 DARIAYAHGQMTEIQLENTLFDFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLS 913 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 914 TLYQLRGRVGRSNRVAYAYFMYEQQKVLNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRG 973 Query: 630 EGEILGIKQSG 640 G +LG +Q G Sbjct: 974 AGNLLGAQQHG 984 >gi|86146945|ref|ZP_01065263.1| transcription-repair coupling factor [Vibrio sp. MED222] gi|85835195|gb|EAQ53335.1| transcription-repair coupling factor [Vibrio sp. MED222] Length = 1153 Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 137/382 (35%), Positives = 212/382 (55%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI ++ DM Q M R++ GDVG GKT VA+ A + Q ++ Sbjct: 599 GFPFEETDDQAMAINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVCTDNSKQVAVL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ ++ ++ +A G+ I++GTH L Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKLIMQDVADGKVDILVGTHKLLS 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L L++VDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 719 SDIKFKDLGLLVVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503 I PA R IKT + D+ I R V+ + G + Y++ Q++ EK + + + Sbjct: 779 IATPPARRLAIKTF---VRESDDAIVREAVLREIMRGGQVYFLHNQVDTIEKTAESLQKL 835 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + + + + HG+M + + E +M+ F + LL+ TT+IE GIDV A+ I Sbjct: 836 IPE---------ARVTVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTI 886 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GF 618 +++ A++ GLAQLHQLRGRVGR + LL HP ++K++ RL + + ED GF Sbjct: 887 LMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGF 946 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG +QSG Sbjct: 947 TLATHDLEIRGAGELLGDEQSG 968 >gi|77360776|ref|YP_340351.1| transcription-repair ATP-dependent coupling factor [Pseudoalteromonas haloplanktis TAC125] gi|76875687|emb|CAI86908.1| transcription-repair ATP-dependent coupling factor [Pseudoalteromonas haloplanktis TAC125] Length = 1157 Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 151/411 (36%), Positives = 223/411 (54%), Gaps = 23/411 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + + G ++ ++ + PF T Q +AI+ +L DM K M R++ Sbjct: 577 LLDIYAQRQAKPGNKFTLDAPAYRQFSDSFPFEETDDQRNAIEAVLGDMQSKQAMDRLVC 636 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q I+ P +LAQQH+E K + I V +++ Sbjct: 637 GDVGFGKTEVAMRAAFVAVNDNKQVAILVPTTLLAQQHFENFKDRFADFPIEVGVLSRFN 696 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 ++ LE++A+G+ I+IGTH L Q I + L L+IVDE+HRFGV+Q+ K+ Sbjct: 697 SPKEQKDTLEKMANGKLDIVIGTHKLIQADIIFNDLGLLIVDEEHRFGVRQKEKIKALRA 756 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G D+S I PA R +KT + R E+I + VL Sbjct: 757 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFV--RQRDVELIR--EAVL 812 Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVM 534 E G + Y++ +E +ER + +S+ HG+M + + E +M Sbjct: 813 REIKRGGQVYFLHNNVE---------TIERVAQEISEWVPEASVTSAHGQMREQELEQIM 863 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F + +L+ TT+IE GID+ A+ II++ A+ GLAQLHQLRGRVGR + L Sbjct: 864 ADFYHQKYNVLVCTTIIETGIDIPTANTIIMDRADKLGLAQLHQLRGRVGRSHHQAYAYL 923 Query: 595 LYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 L P LSK++ RL +++ ED GF +A DL+ R GE+LG QSG Sbjct: 924 LTGDPKALSKDASKRLQAIESLEDLGAGFALATHDLEIRGAGELLGDDQSG 974 >gi|256028682|ref|ZP_05442516.1| transcription-repair coupling factor [Fusobacterium sp. D11] gi|289766594|ref|ZP_06525972.1| transcription-repair coupling factor [Fusobacterium sp. D11] gi|289718149|gb|EFD82161.1| transcription-repair coupling factor [Fusobacterium sp. D11] Length = 963 Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 143/375 (38%), Positives = 223/375 (59%), Gaps = 13/375 (3%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF+ T +Q AI+D+ +DM M R++ GDVG GKT VA+ A AV G Q +++ P Sbjct: 437 PFTETPAQLKAIEDVKRDMESGKVMDRLICGDVGFGKTEVAIRATFKAVMDGKQVILLVP 496 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHYE + +N + +EI++ + + ++L+RI +G A ++IGTH L D Sbjct: 497 TTVLAEQHYERFSERFKNYPVHIEILSRVQSKKEQTESLKRIENGSADLVIGTHRLLSDD 556 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ + L+I+DE+ +FGV+ + KL + VL +TATPIPRTL L+ LG D+S I Sbjct: 557 IKFKDVGLLIIDEEQKFGVKAKEKLKKIKGDIDVLTLTATPIPRTLNLSLLGIRDLSVID 616 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P GR+ I T I N+ I ++I L + EG + ++I + ++ ES + + E Sbjct: 617 TSPEGRQKIHTEYIDNNKNLIKDII--LSEISREG-QVFYIFNSV-KRIESKVKEIRE-- 670 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 L E+ + IHG+M D + + F+NG +L+ATT+IE GID+ +A+ +IIE Sbjct: 671 -LLPEYI--KVDYIHGQMLPRDIKKNIQEFENGNIDVLVATTIIENGIDIENANTMIIEG 727 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEEDL 625 E GL+Q++QLRGR+GR + S C +L + +KN+ R ++ ++ G +A ED Sbjct: 728 VEKLGLSQVYQLRGRIGRSTKKSYCYMLMNENKTKNAKKREESIREFDNLTGLDLAMEDS 787 Query: 626 KQRKEGEILGIKQSG 640 K R GEILG KQ G Sbjct: 788 KIRGVGEILGEKQHG 802 >gi|212634585|ref|YP_002311110.1| transcription-repair coupling factor [Shewanella piezotolerans WP3] gi|212556069|gb|ACJ28523.1| Transcription-repair coupling factor [Shewanella piezotolerans WP3] Length = 1158 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 150/438 (34%), Positives = 234/438 (53%), Gaps = 21/438 (4%) Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270 N K + W+ R+ + +A ++ + R+Q + I+ E + AQ + P Sbjct: 550 NLNKLGNETWSKAKRKAIEKIRDVAAELLDVYARRQARPGDACKIDQE-EYAQ-FASSFP 607 Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T QE+AI +L DM M R++ GDVG GKT VA+ A AV G Q I+ P Sbjct: 608 FEETVDQETAITAVLDDMRTPMAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVAILVPT 667 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LAQQH+E + + +E+++ + + ++ + G+ I+IGTH L Q Sbjct: 668 TLLAQQHFENFQDRFADWPFKIEVMSRFKTAKEQNQVMKELTDGKVDIVIGTHKLLQSEA 727 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L L+++DE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S I Sbjct: 728 KFENLGLLVIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT 787 Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERF 507 PA R +KT + + D I E L + G + Y++ +E EK+ + ++ Sbjct: 788 PPAKRLAVKTFVREYD--DATIREALLREILRGGQVYFLHNSVETIEKRAAEISELLPE- 844 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + + HG+M + + E VM F + +L+ TT+IE GIDV A+ I+IE Sbjct: 845 --------ARVVTAHGQMRERELERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIVIER 896 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED---GFLIAE 622 A+ FGLAQLHQLRGRVGR + L+ HP ++K++ RL + ED GF++A Sbjct: 897 ADKFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTKDARKRLEAIGALEDLGAGFMLAT 956 Query: 623 EDLKQRKEGEILGIKQSG 640 +DL+ R GE+LG +QSG Sbjct: 957 QDLEIRGAGELLGDEQSG 974 >gi|291278661|ref|YP_003495496.1| transcription-repair coupling factor [Deferribacter desulfuricans SSM1] gi|290753363|dbj|BAI79740.1| transcription-repair coupling factor [Deferribacter desulfuricans SSM1] Length = 1111 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 142/411 (34%), Positives = 228/411 (55%), Gaps = 18/411 (4%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 + +L + + K G G+I + + P+ T+ Q I ++ DM + M R+ Sbjct: 536 VDILKIYAERKSRRGFAFTKSGEILKTVELRFPYEETEDQIVVINEVFNDMESETPMERL 595 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIIT 356 + GDVG GKT VA+ A A AVE Q I+AP +L +QHY+ FI+++ ++ + ++ I+ Sbjct: 596 VCGDVGFGKTEVAIRAAAKAVENYKQVAILAPTTVLVRQHYQNFIERF-KDMPVEIDYIS 654 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 ++ALER+ G+ IIIGTH L +++Y L L+IVDE+ RFGV + K+ Sbjct: 655 RFKTSREIKRALERLKKGEIDIIIGTHRLLSKDVEFYDLGLLIVDEEQRFGVNHKEKIKA 714 Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 + VL +TATPIPRTL L+ G D+S I P R+P+ II + +E+ + Sbjct: 715 LKSNIDVLTLTATPIPRTLQLSLSGLRDMSIINTPPQDREPVSIKIIKND--EELNNAIL 772 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMD 535 L G + Y++ ++E+ ++ + L E F S+ +I HG+M + V + Sbjct: 773 KELKRGGQVYFLHNKVEDIEKIAYM--------LKEKFPLSNTSIAHGQMDAKVLDEVFE 824 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F G +L+ TT+IE G+D+ +A+ I+I NA FGLAQL+QL+GRVGRG + C L Sbjct: 825 KFYQGDVDILVCTTIIENGLDIANANTIVINNAHTFGLAQLYQLKGRVGRGNKRGYCYLR 884 Query: 596 Y--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 + +++ + RL ++ D GF I+ DL+ R G++LG +QSG Sbjct: 885 IPQNAKINEVARKRLKIISQLSDLGSGFKISTYDLQIRGAGDLLGAEQSGF 935 >gi|227528907|ref|ZP_03958956.1| transcription-repair coupling factor [Lactobacillus vaginalis ATCC 49540] gi|227351181|gb|EEJ41472.1| transcription-repair coupling factor [Lactobacillus vaginalis ATCC 49540] Length = 1170 Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 144/429 (33%), Positives = 235/429 (54%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R + E +A ++ L +++ +K P + + ++ N P+S T+ Q Sbjct: 569 EWAKTKRRVASKVEDIADELVDLYAKRETEKGYAFP--KDDYLQKQFDANFPYSETRDQL 626 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I +I +DM + M R+L GDVG GKT VAL A+ AV G Q + P +LAQQHY Sbjct: 627 RSIAEIKEDMEKAKPMDRLLVGDVGYGKTEVALRAIFKAVTGGKQVAFLVPTTVLAQQHY 686 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + +KK + I + +++ + ++ + +A G +++GTH + + + L L+ Sbjct: 687 DTMKKRFEGFPIEIALMSRFKTRKELKETEKGLADGTVDVVVGTHRILSKDVHFKDLGLL 746 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + KL Q VL +TATPIPRTL ++ LG D+S + PAGR PI Sbjct: 747 IVDEEQRFGVKHKEKLKQLKNNVDVLTLTATPIPRTLHMSMLGVRDLSVLETPPAGRYPI 806 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T ++ N I + I R + G + Y++ ++ + +E+ V R L + Sbjct: 807 QTYVMEQNSGAIRDGILR---EMQRGGQVYYLHNRVMDIEET-----VARLQQLVPE--A 856 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 I I G+MS+ ESV+ F G +L+ T++IE G+D+ + + + +ENA+ GLAQL Sbjct: 857 RIGYIDGQMSENQLESVLYEFIQGGYDVLVTTSIIETGVDIPNVNTLFVENADRMGLAQL 916 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +Q+RGR+GR ++ +Y P L++ RL+ +++ TE GF IA DL R G Sbjct: 917 YQIRGRIGRSNRVAYAYFMYQPNKVLTELGEKRLAAIRDFTELGSGFKIAMRDLSIRGAG 976 Query: 632 EILGIKQSG 640 +LG +Q G Sbjct: 977 NLLGKQQHG 985 >gi|205371994|ref|ZP_03224812.1| transcription-repair coupling factor [Bacillus coahuilensis m4-4] Length = 1181 Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 147/436 (33%), Positives = 238/436 (54%), Gaps = 25/436 (5%) Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310 +G N +G++ ++ P+ T+ Q +I++I +DM + M R+L GDVG GKT VA Sbjct: 600 VGYAFNPDGEMQREFESLFPYQETEDQTRSIQEIKRDMEKSRPMDRLLCGDVGYGKTEVA 659 Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370 + A A+ G Q + P ILAQQHYE +K+ Q+ + V +++ + + ++ Sbjct: 660 IRAAFKAIADGKQVAFLVPTTILAQQHYETMKERFQDFPVNVSLLSRFRTRKQQTDTIKG 719 Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430 + G I++GTH L I Y L L+I+DE+ RFGV + K+ Q T VL +TATP Sbjct: 720 LKDGSVDIVVGTHRLLSKEIGYKDLGLLIIDEEQRFGVTHKEKIKQLKTNIDVLTLTATP 779 Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWI 488 IPRTL ++ LG D+S I P R P++T ++ N + E IER L+ + +++ Sbjct: 780 IPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEYNGALVREAIER---ELAREGQVFFL 836 Query: 489 CPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 ++E E+K +V + + HGRM++ + ESV+ SF G +L+ Sbjct: 837 YNRVEDIERKADEIAMLVPE---------ARVVYAHGRMTENELESVILSFLEGEADVLV 887 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNS 604 TT+IE G+D+ +A+ +I+ +A+ GL+QL+QLRGRVGR ++ Y LS + Sbjct: 888 TTTIIETGVDIPNANTLIVHDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLSDVA 947 Query: 605 YTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP-ELHDSLLEIAR 660 RL +K TE GF IA DL R G +LG +Q G F+ + +L+ +L+ A Sbjct: 948 EKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHG---FIDSVGFDLYSQMLKDAI 1004 Query: 661 KDAKHILTQDPDLTSV 676 ++ K +L +D + + Sbjct: 1005 EERKSVLKEDKSMKTT 1020 >gi|154707070|ref|YP_001424606.1| transcription-repair coupling factor [Coxiella burnetii Dugway 5J108-111] gi|154356356|gb|ABS77818.1| transcription-repair coupling factor [Coxiella burnetii Dugway 5J108-111] Length = 1157 Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 142/378 (37%), Positives = 210/378 (55%), Gaps = 17/378 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T Q +AI D++ DMS K M R++ GDVG GKT VA+ A AV+ Q ++ P Sbjct: 612 PFEETPDQSAAINDVIVDMSSKRSMDRLICGDVGFGKTEVAMQAAFIAVQNNKQVAVLVP 671 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QH+ + + + + I+ Q R++ + +A G+ IIIGTH L Sbjct: 672 TTLLAEQHFYNFQDRFADWPVRIAAISRLRTQKQRQQITQELAEGKIDIIIGTHKLLSKD 731 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ L L+IVDE+HRFGV Q+ ++ +L +TATPIPRTL ++ G D+S IT Sbjct: 732 IRFKDLGLLIVDEEHRFGVTQKERIKSLRAHVDILTLTATPIPRTLNMSLSGIRDLSLIT 791 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 PA R +KT + + I E I R + G + Y++ + + + E+ Sbjct: 792 TPPAKRLSVKTFVHDYSHVLIREAILRENL---RGGQVYFLHNDV-----ATLAATAEKL 843 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 ++ + +AI HG+M + D E VM F + LL+ TT+IE GID+ A+ III Sbjct: 844 RTIIPE--ARLAIAHGQMRERDLERVMSDFYHQKYNLLVCTTIIESGIDIPTANTIIINR 901 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAE 622 A+ FGLAQLHQLRGRVGR + LL L+ ++ RLS + +D GF +A Sbjct: 902 ADRFGLAQLHQLRGRVGRSHHQAYAYLLIPDQEALTADAEKRLSAISQLDDLGVGFNLAT 961 Query: 623 EDLKQRKEGEILGIKQSG 640 DL+ R GE+LG++QSG Sbjct: 962 HDLEIRGAGELLGVEQSG 979 >gi|126657369|ref|ZP_01728528.1| transcription-repair coupling factor [Cyanothece sp. CCY0110] gi|126621356|gb|EAZ92068.1| transcription-repair coupling factor [Cyanothece sp. CCY0110] Length = 1160 Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 142/400 (35%), Positives = 225/400 (56%), Gaps = 18/400 (4%) Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 K +G ++ Q++ + P+ PT Q AI+D+ D+ M R++ GDVG GKT Sbjct: 588 KNVGFTYPLDTPWQQELEDSFPYQPTPDQLKAIQDVKIDLESDRPMDRLVCGDVGFGKTE 647 Query: 309 VALIAMAAAVEAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 VA+ A+ AV +G Q +AP IL QQHY +K+ I + ++ + +++ Sbjct: 648 VAVRAIFKAVTSGHKQVAFLAPTTILTQQHYHTLKERFAPYPINIGLLNRFRTNSEKKEI 707 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 ++R+A G+ I++GT L SI++ L L++VDE+ RFGV Q+ K+ + VL +T Sbjct: 708 IDRLATGELDIVVGTQQLLGKSIKFKDLGLLVVDEEQRFGVNQKEKIKDMKSHVDVLTLT 767 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL ++ G ++S IT P R+PIKT + N D V ++ L G + ++ Sbjct: 768 ATPIPRTLYMSLSGIREMSLITTPPPSRRPIKTHLSRYNP-DVVRTAIRNELDRGGQVFY 826 Query: 488 ICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545 + P++E E+ + + +V ++ IAI HG+M+ D E M SF NG +L Sbjct: 827 VVPRVEGIEEVAAELKKMVP---------SARIAIGHGQMNVNDLEMTMLSFNNGDADIL 877 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKN 603 + TT++E G+D+ + IIIE+A+ FGLAQL+QLRGRVGR + LLY L++ Sbjct: 878 VCTTIVESGLDIPRVNTIIIEDAQKFGLAQLYQLRGRVGRAGIQAHAWLLYPSKAQLTET 937 Query: 604 SYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640 + RL L+ G+ +A D++ R G +LG +QSG Sbjct: 938 ARKRLRALQEFSQLGSGYQLATRDMEIRGVGNLLGAEQSG 977 >gi|260550143|ref|ZP_05824357.1| transcription-repair coupling factor [Acinetobacter sp. RUH2624] gi|260406898|gb|EEX00377.1| transcription-repair coupling factor [Acinetobacter sp. RUH2624] Length = 1153 Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 147/430 (34%), Positives = 229/430 (53%), Gaps = 23/430 (5%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W+ R+ L +A ++ + R+Q K G ++ + + + T Q + Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFAFELDQSLYMQFASGFAYEETLDQAN 612 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI+ L DM Q M R++ GDVG GKT VA+ A AV+ G Q ++ P +LAQQHYE Sbjct: 613 AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 K + + +E+++ K +E +A G+ I++GTH L Q+++Q+ L L++ Sbjct: 673 SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLADGKVDIVVGTHKLLQENVQFKDLGLMV 732 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 VDE+HRFGV+ + ++ +L +TATPIPRTL + G D+S I PA R +K Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792 Query: 460 TVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515 T + I E I R L G + Y++ +++ E+ N R +V Sbjct: 793 TFVQEHTDASIKEAILR---ELLRGGQVYFLHNEVDTIERAAENIRMLVPE--------- 840 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A+ HG+M + + E VM F + +L+ +T+IE GIDV +A+ I+IE A+ GLAQ Sbjct: 841 ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ 900 Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630 LHQLRGRVGR + LL L ++ RL ++ GF++A EDL+ R Sbjct: 901 LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA 960 Query: 631 GEILGIKQSG 640 GE+LG +QSG Sbjct: 961 GELLGEQQSG 970 >gi|254235976|ref|ZP_04929299.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa C3719] gi|126167907|gb|EAZ53418.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa C3719] Length = 1148 Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 141/381 (37%), Positives = 212/381 (55%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q+SAI+ ++ DM M R++ GDVG GKT VA+ A AV +G Q ++ Sbjct: 597 GFPFEETPDQQSAIEAVVADMLAPRPMDRLVCGDVGFGKTEVAMRAAFVAVHSGKQVAVL 656 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A G+ I+IGTH L Q Sbjct: 657 VPTTLLAQQHYNSFRDRFADWPVSVEVMSRFKSAKEVENAAREFPPGKIDILIGTHKLLQ 716 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + +++ L LV++DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 717 EDVKFANLGLVVIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 776 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504 I PA R ++T + + + + VI E L L G + Y++ +++ EK + +V Sbjct: 777 IATPPARRLSVRTFV--MEQQNAVIKEALLRELLRGGQVYYLHNEVKTIEKCARDLAELV 834 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + I I HG+M + + E VM F + +L+A+T+IE GIDV A+ I+ Sbjct: 835 PE---------ARIGIGHGQMHERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIL 885 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFL 619 IE A+ FGLAQLHQLRGRVGR + LL P ++ ++ RL + N +D GF+ Sbjct: 886 IERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRRQMTPDAEKRLEAIANAQDLGAGFV 945 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG QSG Sbjct: 946 LATHDLEIRGAGELLGDGQSG 966 >gi|294784401|ref|ZP_06749692.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_27] gi|294487973|gb|EFG35328.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_27] Length = 981 Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 146/423 (34%), Positives = 239/423 (56%), Gaps = 20/423 (4%) Query: 225 RERLAYD-ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283 +++L+ D E+ A +I + ++ G + + + ++ PF+ T +Q AI+D Sbjct: 408 KDKLSEDIEIFAKEIIKIQAKRNLGN--GFKFSKDTVMQEEFEETFPFTETPAQSKAIED 465 Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343 + +DM M R++ GDVG GKT VA+ A AV G Q +++ P +LA+QHYE + Sbjct: 466 VKRDMESGKVMDRLICGDVGFGKTEVAIRATFKAVMDGKQVILLVPTTVLAEQHYERFSE 525 Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403 +N + +EI++ + + ++L+RI +G A ++IGTH L D I++ + L+I+DE+ Sbjct: 526 RFKNYPVHIEILSRVQSKKEQTESLKRIENGSADLVIGTHRLLSDDIKFKDVGLLIIDEE 585 Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463 +FGV+ + KL + VL +TATPIPRTL L+ LG D+S I P GR+ I T I Sbjct: 586 QKFGVKAKEKLKKIKGNIDVLTLTATPIPRTLNLSLLGIRDLSVIDTSPEGRQKIHTEYI 645 Query: 464 PINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIA 519 N+ I ++I + EG + ++I ++ E K R ++ + + Sbjct: 646 DNNKNLIKDII--FSEISREG-QVFYIFNSVKMIESKVKEIRELLPEY--------IKVG 694 Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579 IHG+M D + + F+NG +L+ATT+IE GID+ +A+ +IIE E GL+Q++QL Sbjct: 695 YIHGQMLPRDIKKNIQEFENGNIDVLVATTIIENGIDIENANTMIIEGVEKLGLSQVYQL 754 Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEEDLKQRKEGEILGIK 637 RGR+GR + S C +L + +KN+ R ++ ++ G +A ED K R GEILG K Sbjct: 755 RGRIGRSTKKSYCYMLMNENKTKNAKKREESIREFDNLTGIDLAMEDSKIRGVGEILGEK 814 Query: 638 QSG 640 Q G Sbjct: 815 QHG 817 >gi|300172731|ref|YP_003771896.1| transcription-repair coupling factor [Leuconostoc gasicomitatum LMG 18811] gi|299887109|emb|CBL91077.1| transcription-repair coupling factor [Leuconostoc gasicomitatum LMG 18811] Length = 1172 Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 149/435 (34%), Positives = 237/435 (54%), Gaps = 28/435 (6%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ A E +A + L +++ ++ P + ++ + P +P Q Sbjct: 565 EWAKTKRQVAAKIEDIADDLLELYAKREAQQGYAFPPDDTEQLKFDMAFGYPETP--DQI 622 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I++I DM + M R+L GDVG GKT VAL A+ AV AG Q +AP IL QQHY Sbjct: 623 RSIEEIKVDMQKVRPMDRLLVGDVGFGKTEVALRAVFKAVHAGKQVAFLAPTTILVQQHY 682 Query: 339 E-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 E + ++ I + +++ A + ++++ Q I++GTH L + + L L Sbjct: 683 ETMLARFNDFPNIKIGVLSRFQTTAQNKFVIKQLNEHQIDIVVGTHRLLSKDVDFLDLGL 742 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +I+DE+ RFGV+ + +L Q + VL +TATPIPRTL + +G D+S I PA R P Sbjct: 743 LIIDEEQRFGVKHKERLKQLRHSVDVLTLTATPIPRTLNMAMVGARDLSIIETPPANRYP 802 Query: 458 IKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 I+T ++ D +I R ++ L+ G +A+++ ++ + ++R S E Sbjct: 803 IQTYVL---EADWIIVRNAIEKELARGGQAFYLHNRVAD---------IDRVASQIEDLV 850 Query: 516 SS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 S + IHG+MS+ ESV+ F NG +L+ TT+IE G+D+ +A+ +I+ENA+H GL Sbjct: 851 PSARVGAIHGQMSETQLESVLYDFLNGNYDVLVTTTIIETGVDIPNANTLIVENADHMGL 910 Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKN----SYTRLSVLKN-TE--DGFLIAEEDLK 626 +QL+QLRGRVGR ++ Y P S+ + RL +++ TE GF IA DL Sbjct: 911 SQLYQLRGRVGRSARLAYAYFTY--PFSRTPSEEAEKRLEAIRDFTELGSGFRIAMRDLS 968 Query: 627 QRKEGEILGIKQSGM 641 R G+ILG +Q G Sbjct: 969 IRGAGDILGKQQHGF 983 >gi|294781777|ref|ZP_06747110.1| transcription-repair coupling factor [Fusobacterium sp. 1_1_41FAA] gi|294481887|gb|EFG29655.1| transcription-repair coupling factor [Fusobacterium sp. 1_1_41FAA] Length = 979 Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 220/377 (58%), Gaps = 17/377 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF+ T Q AI+D+ +DM M R++ GDVG GKT VA+ A A+ Q V++ P Sbjct: 452 PFTETPGQLKAIEDVKRDMESGKVMDRLVCGDVGYGKTEVAIRAAFKAIMDEKQVVLLVP 511 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHYE + +N I +EI++ + + ++L++I +G A +IIGTH L D Sbjct: 512 TTVLAEQHYERFSERFKNYPINIEILSRVQTKKEQEESLKKIENGSADLIIGTHRLLSDD 571 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I+Y + L+I+DE+ +FGV+ + KL + +L +TATPIPRTL L+ LG D+S I Sbjct: 572 IKYNDIGLLIIDEEQKFGVKAKEKLKKLKGDIDILTLTATPIPRTLNLSLLGIRDLSIID 631 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 P GR+ I+T I N+ I ++I L V EG + ++I ++ E K R ++ Sbjct: 632 TSPEGRQKIQTEYIDNNKDLIRDII--LTEVSREG-QVFYIFNSVKRIEMKSKELRELLP 688 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + + IHG+M D + + +F+NG +LIATT+IE GID+ +A+ +II Sbjct: 689 EY--------IKVDYIHGQMLARDIKRAIHNFENGNTDVLIATTIIENGIDIENANTMII 740 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEE 623 E E GL+Q++QLRGR+GR + S C +L + +KN+ R ++ ++ G ++ E Sbjct: 741 EGVEKLGLSQVYQLRGRIGRSNKKSYCYMLMNENKTKNAQKREESIREFDNLTGIDLSME 800 Query: 624 DLKQRKEGEILGIKQSG 640 D K R GEILG KQ G Sbjct: 801 DSKIRGVGEILGEKQHG 817 >gi|284007308|emb|CBA72650.1| transcription-repair coupling factor [Arsenophonus nasoniae] Length = 1146 Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 143/388 (36%), Positives = 214/388 (55%), Gaps = 23/388 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T QE AI +L DM Q M R++ GDVG GKT VA+ A A+ Sbjct: 590 QLFCQGFPFETTVDQEQAINAVLSDMCQPIAMDRLVCGDVGFGKTEVAMRAAFLAITNNQ 649 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQH++ + N + +E+++ +++ + A G+ I+IGT Sbjct: 650 QVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQQQIINAAAEGKVDILIGT 709 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q+ I+++ L L+I+DE+HRFGV+ + + +L +TATPIPRTL + G Sbjct: 710 HKLLQNDIRWHALGLLIIDEEHRFGVRHKELIKSMRANVDILTLTATPIPRTLNMAMSGM 769 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKE 497 D+S I P+ R +KT + + D++I R + +L E G + Y++ ++ EK + Sbjct: 770 RDLSIIATPPSRRLSVKTF---VRQYDDLIVR-EAILREILRGGQVYYLFNDVKYIEKAK 825 Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557 S+V + I HG+M + + E VM F +LI TT+IE GID+ Sbjct: 826 ERLESLVPE---------ARFVIGHGQMRERELERVMTDFHRQRFNVLICTTIIETGIDI 876 Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTE 615 A+ IIIE A+HFGLAQLHQLRGRVGR + LL HP ++ ++ RL + E Sbjct: 877 PSANTIIIERADHFGLAQLHQLRGRVGRSYHQAYAYLLTPHPKAMTIDAQKRLEAIAALE 936 Query: 616 D---GFLIAEEDLKQRKEGEILGIKQSG 640 D GF +A DL+ R GE+LG +QSG Sbjct: 937 DLGAGFALATHDLEIRGAGELLGAEQSG 964 >gi|242371667|ref|ZP_04817241.1| transcription-repair coupling factor [Staphylococcus epidermidis M23864:W1] gi|242350616|gb|EES42217.1| transcription-repair coupling factor [Staphylococcus epidermidis M23864:W1] Length = 1169 Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 151/418 (36%), Positives = 229/418 (54%), Gaps = 23/418 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q+ +I++I DM ++ M R+L GDVG GKT VA+ A AV G Q + Sbjct: 615 DFPYELTPDQDKSIEEIKSDMERERPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 674 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ ++ E + G I++GTH L Sbjct: 675 VPTTILAQQHYETLIERMQDFPVEIQLVSRFRTTKEIKETKEGLKSGYVDIVVGTHKLLG 734 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 735 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSV 794 Query: 448 ITEKPAGRKPIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 795 IETPPENRFPVQTYVLEQNTNFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 843 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 844 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLI 903 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE A+ FGL+QL+QLRGRVGR I L HP L++ + RL +K TE GF Sbjct: 904 IEEADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLNETAEERLQAIKEFTELGSGF 962 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676 IA DL R G +LG +Q G + +L+ +LE A + + I + PD V Sbjct: 963 KIAMRDLNIRGAGNLLGKQQHGFIDSV--GFDLYSQMLEEAVNEKRGIKEETPDAPEV 1018 >gi|15806542|ref|NP_295255.1| transcription-repair coupling factor [Deinococcus radiodurans R1] gi|6459293|gb|AAF11095.1|AE001997_1 transcription-repair coupling factor [Deinococcus radiodurans R1] Length = 1054 Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 138/397 (34%), Positives = 222/397 (55%), Gaps = 27/397 (6%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 +++ +N F TK Q +A+K+ ++D+ + R++ GDVG GKT VAL A V G Sbjct: 489 EQVEKNFEFELTKDQVTALKETMRDLEKPTPADRLISGDVGFGKTEVALRAAHRVVGHGK 548 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LA+QH + + + VE ++ R L + G+ I+IGT Sbjct: 549 QVAVLVPTTLLAEQHTATFVERFKGLPVRVEGLSRFTTDKQARNILAELKAGRVDILIGT 608 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV----------------LLM 426 H L I++ L L+IVDE+HRFGV Q+ KL Q P + L + Sbjct: 609 HRLLSGDIEFKDLGLIIVDEEHRFGVGQKEKLRQLRGLPEMVDGKLTMTGDEKAVDTLAL 668 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486 +ATPIPRTL ++ +G D+S I P GR+PI+T++ P + + V + + + G K + Sbjct: 669 SATPIPRTLYMSMVGLRDMSSIQTPPKGRRPIQTILSPFDPL-TVRDAIMTEIGRGGKVF 727 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 +I +I RS+ R N + E + I + HGRM++ + E +M F+ G +L+ Sbjct: 728 YIHDRI---ASIGARSLYLR-NLVPE---ARIGVAHGRMNEEELEEIMLGFEQGAFDVLL 780 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 ATT++E G+D+ +A+ I+IE ++ GLAQL+QLRGRVGR + + L Y P +++N+ Sbjct: 781 ATTIVETGLDIPEANTILIERSDRLGLAQLYQLRGRVGRRAQTAYAYLFYPPRMTENAQR 840 Query: 607 RLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 RL + + +D G L+AE+D++ R G ILG +Q G Sbjct: 841 RLWAIADLQDLGSGHLLAEKDMEIRGVGNILGEEQHG 877 >gi|314932725|ref|ZP_07840095.1| transcription-repair coupling factor [Staphylococcus caprae C87] gi|313654555|gb|EFS18307.1| transcription-repair coupling factor [Staphylococcus caprae C87] Length = 1169 Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 153/419 (36%), Positives = 230/419 (54%), Gaps = 25/419 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I++I DM ++ M R+L GDVG GKT VA+ A AV G Q + Sbjct: 615 DFPYELTPDQGKSIEEIKGDMERERPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 674 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ R+ E + G I++GTH L Sbjct: 675 VPTTILAQQHYETLIERMQDYPVEIQLVSRFRTTKEVRETKEGLKSGYVDIVVGTHKLLG 734 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 735 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSV 794 Query: 448 ITEKPAGRKPIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 795 IETPPENRFPVQTYVLEQNTNFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 843 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 844 KREQLQMLMPEANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLI 903 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE A+ FGL+QL+QLRGRVGR I L HP L++ + RL +K TE GF Sbjct: 904 IEEADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLNETAEERLQAIKEFTELGSGF 962 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQP-ELHDSLLEIARKDAKHILTQDPDLTSV 676 IA DL R G +LG +Q G F+ + +L+ +LE A + + I + PD V Sbjct: 963 KIAMRDLNIRGAGNLLGKQQHG---FIDSVGFDLYSQMLEEAVNEKRGIKEETPDAPEV 1018 >gi|223044420|ref|ZP_03614453.1| transcription-repair coupling factor [Staphylococcus capitis SK14] gi|222442209|gb|EEE48321.1| transcription-repair coupling factor [Staphylococcus capitis SK14] Length = 1169 Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 152/418 (36%), Positives = 228/418 (54%), Gaps = 23/418 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I++I DM ++ M R+L GDVG GKT VA+ A AV G Q + Sbjct: 615 DFPYELTPDQGKSIEEIKGDMERERPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 674 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ R+ E + G I++GTH L Sbjct: 675 VPTTILAQQHYETLIERMQDYPVEIQLVSRFRTTKEVRETKEGLKSGYVDIVVGTHKLLG 734 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 735 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSV 794 Query: 448 ITEKPAGRKPIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 795 IETPPENRFPVQTYVLEQNTNFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 843 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 844 KREQLQMLMPEANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLI 903 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE A+ FGL+QL+QLRGRVGR I L HP L++ + RL +K TE GF Sbjct: 904 IEEADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLNETAEERLQAIKEFTELGSGF 962 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676 IA DL R G +LG +Q G + +L+ +LE A + + I + PD V Sbjct: 963 KIAMRDLNIRGAGNLLGKQQHGFIDSV--GFDLYSQMLEEAVNEKRGIKEETPDAPEV 1018 >gi|116510854|ref|YP_808070.1| transcription-repair coupling factor [Lactococcus lactis subsp. cremoris SK11] gi|116106508|gb|ABJ71648.1| transcription-repair coupling factor [Lactococcus lactis subsp. cremoris SK11] Length = 1162 Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 142/437 (32%), Positives = 233/437 (53%), Gaps = 23/437 (5%) Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 K D W E ++ + L +Q KK G + + ++ + Sbjct: 552 KLNDGRWRKTMSSVSKQVEDISDDLIKLYAERQAKK--GFAFSPDDASQEEFDSGFSYVE 609 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T+ Q +I +I DM + M R+L GDVG GKT VA+ A A+ G Q ++ P +L Sbjct: 610 TEDQIRSINEIKHDMELERPMDRLLVGDVGFGKTEVAMRAAFKAINDGKQVAVLVPTTVL 669 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QH+ + N + VE+++ + + + L ++ G+ +IIGTH L ++++ Sbjct: 670 AEQHFNNFTERFINFGVNVEVLSRFQTKTQQTEILAKLKKGRVDLIIGTHRLLSKDVEFF 729 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L L+I+DE+ RFGV+ + +L + T VL +TATPIPRTL ++ LG D+S I P Sbjct: 730 DLGLMIIDEEQRFGVKHKERLKELKTQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 789 Query: 454 GRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNS 509 R P++T ++ N + + I R +S G + Y++ +++ E+K S ++ Sbjct: 790 NRYPVQTYVMETNYGVVRDAILR---EISRGGQVYYVYNRVDTIEQKVSQLEELIPE--- 843 Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 + I IHG+M+++ E+ + +F G +L+ATT+IE G+D+ +++ + IENA+ Sbjct: 844 ------ARIGFIHGQMTEVQLENTLLAFIAGDYDVLVATTIIETGVDIPNSNTLFIENAD 897 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEED 624 GL+QL+QLRGRVGR ++ +Y P LS+ S RL +K TE GF IA D Sbjct: 898 MMGLSQLYQLRGRVGRSNRVAYAYFMYRPEKILSEVSEKRLEAIKGFTELGSGFKIAMRD 957 Query: 625 LKQRKEGEILGIKQSGM 641 L R G +LG +QSG Sbjct: 958 LSIRGAGNLLGSEQSGF 974 >gi|239787601|emb|CAX84069.1| Transcription-repair coupling factor [uncultured bacterium] Length = 1178 Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 145/394 (36%), Positives = 218/394 (55%), Gaps = 13/394 (3%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G + + Q+ PF T Q +AI+ +L+DM++ M R++ GDVG GKT VAL Sbjct: 610 GFGFSTPDPLLQEFAAGFPFEETPDQTAAIEAVLEDMAKSRPMDRLVCGDVGFGKTEVAL 669 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A AV G Q +++P IL QQH+E + I VEI++ A ++KA+E I Sbjct: 670 RAAFRAVMDGKQVAVLSPTTILTQQHFETFARRLAAYPITVEILSRFRTPAEQKKAVEMI 729 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 AHG I++GTH L Q + + L L++VDE+ RFGV + ++ Q +L +TATPI Sbjct: 730 AHGGVDIVVGTHRLLQKDVVFKDLGLLVVDEEQRFGVVHKERIKQMRATVDILTLTATPI 789 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491 PRTL L G DIS I P R I+T ++ +R +V E + + G + +++ Sbjct: 790 PRTLHLAMSGLRDISIIATPPINRLAIRTFVLQYDR-QKVREAVLREIYRGGQVFFVHNH 848 Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551 +++ + VE + E + I + HG+M + E +M SF LL+ TT+I Sbjct: 849 VQDID----KMAVELTELVPE---ARIGVAHGQMREGRLEKIMLSFYRQEFNLLLCTTII 901 Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLS 609 E G+D+ A+ III A+ FGLAQLHQLRGRVGR + + L HP LS+++ RL Sbjct: 902 ENGVDIPTANTIIIHRADRFGLAQLHQLRGRVGRSKHRAYAYLFIPHPQTLSEDALRRLE 961 Query: 610 VLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 +++ + GF +A D++ R G ILG +QSG Sbjct: 962 AIESMGELGAGFTLATHDMEIRGAGNILGEEQSG 995 >gi|225850639|ref|YP_002730873.1| transcription-repair-coupling factor (trcf) (ATP-dependent helicase mfd) [Persephonella marina EX-H1] gi|225645015|gb|ACO03201.1| transcription-repair-coupling factor (trcf) (ATP-dependent helicase mfd) [Persephonella marina EX-H1] Length = 947 Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 140/407 (34%), Positives = 225/407 (55%), Gaps = 16/407 (3%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 + L RKQ +++ P+ VE + + R+ P+ T Q AIKDI +D+S M R+ Sbjct: 384 VKLYTERKQIRRD---PLVVENDLIEAFERSFPYIETPDQLKAIKDIKRDLSSDRPMERV 440 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 + GDVG GKT VA+ A+ G Q++++ P +L+ QHY K+ + ++VE ++ Sbjct: 441 ICGDVGFGKTEVAIRAVFINAVNGKQSLVLVPTTVLSYQHYRNFKERLEPFGVVVENLSR 500 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 + +R+ G+ +IIGTH +++++ L L+++DE+HRFGV+ + K+ Sbjct: 501 LKSKKETEDIFKRVKEGKIDVIIGTHKALNENLKFKNLGLLVIDEEHRFGVRAKEKIKAL 560 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 L MTATPIPRTL + G D+S I+ P GR KT + I D + + + Sbjct: 561 KKDVDTLYMTATPIPRTLNMALSGLKDMSVISTPPEGRVETKT-FVSIFSEDLIKKAVNF 619 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDS 536 L G + +++ +IE S+ ER + L F + I I HG+M + E ++ Sbjct: 620 ELERGGQVFYLHNRIE--------SIKERADHLSSLFRGARIGIAHGKMRPKEIEKIILE 671 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F +L++T++IE GID+ A+ +IIE A+ FGLAQL+ LRGRVGRG + C LL Sbjct: 672 FIERKIDILVSTSIIETGIDIPTANTLIIERADLFGLAQLYHLRGRVGRGNIQAYCYLLL 731 Query: 597 HPPLSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 P +++N+ R+ V L G ++ ED++ R G ILG++QSG Sbjct: 732 PPQITENAEKRIDVILRLTRPGSGLKVSIEDMQIRGVGNILGVEQSG 778 >gi|29654454|ref|NP_820146.1| transcription-repair coupling factor [Coxiella burnetii RSA 493] gi|29541721|gb|AAO90660.1| transcription-repair coupling factor [Coxiella burnetii RSA 493] Length = 1157 Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 143/379 (37%), Positives = 211/379 (55%), Gaps = 19/379 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T Q +AI D++ DMS K M R++ GDVG GKT VA+ A AV+ Q ++ P Sbjct: 612 PFEETPDQSAAINDVIVDMSSKRSMDRLICGDVGFGKTEVAMQAAFIAVQNNKQVAVLVP 671 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QH+ + + + + I+ Q R++ + +A G+ IIIGTH L Sbjct: 672 TTLLAEQHFYNFQDRFADWPVRIAAISRLRTQKQRQQITQELAEGKIDIIIGTHKLLSKD 731 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ L L+IVDE+HRFGV Q+ ++ +L +TATPIPRTL ++ G D+S IT Sbjct: 732 IRFKDLGLLIVDEEHRFGVTQKERIKSLRAHVDILTLTATPIPRTLNMSLSGIRDLSLIT 791 Query: 450 EKPAGRKPIKTVI---IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 PA R +KT + P+ I E I R + G + Y++ + + + E+ Sbjct: 792 TPPAKRLSVKTFVHDYSPV-LIREAILRENL---RGGQVYFLHNDV-----ATLAATAEK 842 Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 ++ + +AI HG+M + D E VM F + LL+ TT+IE GID+ A+ III Sbjct: 843 LRTIIPE--ARLAIAHGQMRERDLERVMSDFYHQKYNLLVCTTIIESGIDIPTANTIIIN 900 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIA 621 A+ FGLAQLHQLRGRVGR + LL L+ ++ RLS + +D GF +A Sbjct: 901 RADRFGLAQLHQLRGRVGRSHHQAYAYLLIPDQEALTADAEKRLSAISQLDDLGVGFNLA 960 Query: 622 EEDLKQRKEGEILGIKQSG 640 DL+ R GE+LG++QSG Sbjct: 961 THDLEIRGAGELLGVEQSG 979 >gi|331701922|ref|YP_004398881.1| transcription-repair coupling factor [Lactobacillus buchneri NRRL B-30929] gi|329129265|gb|AEB73818.1| transcription-repair coupling factor [Lactobacillus buchneri NRRL B-30929] Length = 1178 Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 140/429 (32%), Positives = 234/429 (54%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW + + E +A ++ L ++ +K P + + + P+S T Q Sbjct: 568 EWAKTKAKVASKIEDIADELIDLYAKRSAEKGYAYP--QDDSLQAEFEAAFPYSETPDQL 625 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I +DM ++ M R+L GDVG GKT VAL A A+E G Q + P ILAQQHY Sbjct: 626 RSATEIKRDMETQHPMDRLLVGDVGYGKTEVALRAAFKAIEVGKQVAFLVPTTILAQQHY 685 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + + I V +++ ++ L+ + G+ +++GTH L +++ L L+ Sbjct: 686 ETMLDRFREYPITVRVLSRFQTAKQVKETLQGLKDGKVDVVVGTHRLLSKDVKFNDLGLL 745 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + ++ + + VL +TATPIPRTL ++ +G D+S I P+ R PI Sbjct: 746 IIDEEQRFGVKHKERIKEMRSDVDVLTLTATPIPRTLNMSMMGVRDLSVIETPPSNRYPI 805 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T +I N I E IER +S G + +++ ++ S+ VE+ ++L ++ Sbjct: 806 QTYVIEQNAGTIREAIER---EMSRGGQVFYLHNRV-----SDIEKTVEQISALVP--SA 855 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 + IHG+MS+ E ++ F NG +L+ TT+IE G+D+ + + + +ENA+ GL+QL Sbjct: 856 RVGYIHGQMSENQMEDILYDFINGEYDVLVTTTIIETGVDIPNVNTLFVENADRMGLSQL 915 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGR+GR ++ +Y P L++ RL +++ TE GF IA DL R G Sbjct: 916 YQLRGRIGRSSRVAYAYFMYKPNKVLTEIGEKRLEAIRDFTELGSGFKIAMRDLSIRGAG 975 Query: 632 EILGIKQSG 640 +LG +Q G Sbjct: 976 NLLGKQQHG 984 >gi|77165119|ref|YP_343644.1| transcription-repair coupling factor [Nitrosococcus oceani ATCC 19707] gi|254433553|ref|ZP_05047061.1| transcription-repair coupling factor [Nitrosococcus oceani AFC27] gi|76883433|gb|ABA58114.1| transcription-repair coupling factor [Nitrosococcus oceani ATCC 19707] gi|207089886|gb|EDZ67157.1| transcription-repair coupling factor [Nitrosococcus oceani AFC27] Length = 1158 Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 149/423 (35%), Positives = 232/423 (54%), Gaps = 20/423 (4%) Query: 224 ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283 ARER+ ++ A +A+ R KK +P+ R PF T Q AI+ Sbjct: 567 ARERVR--DVAAELLAIYAQRAARKK---LPLPTPDSHYTAFARAFPFEETPDQADAIQA 621 Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343 ++ D++ M R++ GDVG GKT VA+ A +AG Q ++ P +LAQQHY+ K Sbjct: 622 VIADLTSDQPMDRLVCGDVGFGKTEVAMRATFIVSQAGKQVAVLVPTTLLAQQHYQSFKD 681 Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403 + VE+I+ + + + IA G+A I+IGTH L Q++I++ L LVI+DE+ Sbjct: 682 RFADWPARVEVISRFRSRKEQEAVISGIADGRADIVIGTHKLLQENIRFKNLGLVIIDEE 741 Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463 HRFGV+Q+ ++ T +L +TATPIPRTL ++ D+S I PA R IKT + Sbjct: 742 HRFGVRQKERMKALRTEVDILTLTATPIPRTLHMSLSNLRDLSIIATPPARRLAIKTFVR 801 Query: 464 PINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522 N D ++ E L + G + Y++ ++E + + +R +L + + I H Sbjct: 802 QWN--DNLLREALLREIKRGGQVYFLHNEVE-----SINKMAQRVQTLFPE--AKVGIAH 852 Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582 G+M + + E VM +F + +LI TT+IE GID+ A+ III A+ GLAQL+QLRGR Sbjct: 853 GQMRERELEQVMLNFYHRRFNVLICTTIIETGIDIPSANTIIIHRADKLGLAQLYQLRGR 912 Query: 583 VGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIK 637 VGR + L+ P ++ ++ RL +++ E+ GF +A D++ R GE+LG Sbjct: 913 VGRSHHRAYAYLIVPPRSVMTADAIKRLDAIESLEELGAGFTLASHDMEIRGAGELLGKD 972 Query: 638 QSG 640 QSG Sbjct: 973 QSG 975 >gi|27469198|ref|NP_765835.1| transcription-repair coupling factor [Staphylococcus epidermidis ATCC 12228] gi|81842450|sp|Q8CMT1|MFD_STAES RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|27316747|gb|AAO05922.1|AE016751_217 transcription-repair coupling factor [Staphylococcus epidermidis ATCC 12228] Length = 1169 Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 151/414 (36%), Positives = 225/414 (54%), Gaps = 23/414 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 615 DFPYELTPDQSKSIDEIKGDMERARPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFL 674 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ R+ E + G I++GTH L Sbjct: 675 VPTTILAQQHYETLLERMQDFPVEIQLVSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLG 734 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 735 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSV 794 Query: 448 ITEKPAGRKPIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 795 IETPPENRFPVQTYVLEQNTNFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 843 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 844 KREQLQRLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLI 903 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE A+ FGL+QL+QLRGRVGR I L HP L++ + RL +K TE GF Sbjct: 904 IEEADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLNETAEERLQTIKEFTELGSGF 962 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 IA DL R G +LG +Q G + +L+ +LE A + + I + PD Sbjct: 963 KIAMRDLNIRGAGNLLGKQQHGFIDSV--GFDLYSQMLEEAVNEKRGIKEESPD 1014 >gi|161831377|ref|YP_001597022.1| transcription-repair coupling factor [Coxiella burnetii RSA 331] gi|161763244|gb|ABX78886.1| transcription-repair coupling factor [Coxiella burnetii RSA 331] Length = 1157 Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 143/379 (37%), Positives = 211/379 (55%), Gaps = 19/379 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T Q +AI D++ DMS K M R++ GDVG GKT VA+ A AV+ Q ++ P Sbjct: 612 PFEETPDQSAAINDVIVDMSSKRSMDRLICGDVGFGKTEVAMQAAFIAVQNNKQVAVLVP 671 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QH+ + + + + I+ Q R++ + +A G+ IIIGTH L Sbjct: 672 TTLLAEQHFYNFQDRFADWPVRIAAISRLRTQKQRQQITQELAEGKIDIIIGTHKLLSKD 731 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ L L+IVDE+HRFGV Q+ ++ +L +TATPIPRTL ++ G D+S IT Sbjct: 732 IRFKDLGLLIVDEEHRFGVTQKERIKSLRAHVDILTLTATPIPRTLNMSLSGIRDLSLIT 791 Query: 450 EKPAGRKPIKTVI---IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 PA R +KT + P+ I E I R + G + Y++ + + + E+ Sbjct: 792 TPPAKRLSVKTFVHDYSPV-LIREAILRENL---RGGQVYFLHNDV-----ATLAATAEK 842 Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 ++ + +AI HG+M + D E VM F + LL+ TT+IE GID+ A+ III Sbjct: 843 LRTIIPE--ARLAIAHGQMRERDLERVMSDFYHQKYNLLVCTTIIESGIDIPTANTIIIN 900 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIA 621 A+ FGLAQLHQLRGRVGR + LL L+ ++ RLS + +D GF +A Sbjct: 901 RADRFGLAQLHQLRGRVGRSHHQAYAYLLIPDQEALTADAEKRLSAISQLDDLGVGFNLA 960 Query: 622 EEDLKQRKEGEILGIKQSG 640 DL+ R GE+LG++QSG Sbjct: 961 THDLEIRGAGELLGVEQSG 979 >gi|22536193|ref|NP_687044.1| transcription-repair coupling factor [Streptococcus agalactiae 2603V/R] gi|25010083|ref|NP_734478.1| transcription-repair coupling factor [Streptococcus agalactiae NEM316] gi|77414464|ref|ZP_00790614.1| reticulocyte binding protein [Streptococcus agalactiae 515] gi|22533010|gb|AAM98916.1|AE014191_8 transcription-repair coupling factor [Streptococcus agalactiae 2603V/R] gi|23094434|emb|CAD45653.1| Unknown [Streptococcus agalactiae NEM316] gi|77159474|gb|EAO70635.1| reticulocyte binding protein [Streptococcus agalactiae 515] Length = 1165 Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 160/459 (34%), Positives = 251/459 (54%), Gaps = 30/459 (6%) Query: 224 ARERLA--YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281 A++R+A +++ + L R Q + G + + + + + T+ Q +I Sbjct: 564 AKQRVAKQVEDIADDLLKLYAERSQLQ---GFAFSPDDNMQNDFDNDFAYVETEDQLRSI 620 Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341 K+I QDM M R+L GDVG GKT VA+ A AV Q V++ P +LAQQH+E Sbjct: 621 KEIKQDMEGNRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLVPTTVLAQQHFENF 680 Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401 K+ N + V++++ + + L+R++ GQ IIIGTH L + + L L+++D Sbjct: 681 KERFSNYPVTVDVLSRFRSKKEQTDTLKRLSKGQVDIIIGTHRLLSQDVVFSDLGLIVID 740 Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461 E+ RFGV+ + KL + T VL +TATPIPRTL ++ LG D+S I P R P++T Sbjct: 741 EEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTY 800 Query: 462 IIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSS 517 ++ N + E I R + G + +++ +++ ++K S + +V +S Sbjct: 801 VLETNPGLVREAIIR---EIDRGGQVFYVYNKVDTIDQKVSELQELVPE---------AS 848 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 I +HG+MS+I E+ + F NG +L+ATT+IE G+D+ + + + +ENA+H GL+ L+ Sbjct: 849 IGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFVENADHMGLSTLY 908 Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGE 632 QLRGRVGR I+ L+Y P L++ S RL +K TE GF IA DL R G Sbjct: 909 QLRGRVGRSNRIAYAYLMYRPDKVLTEISEKRLDAIKGFTELGSGFKIAMRDLSIRGAGN 968 Query: 633 ILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669 ILG QSG + E++ LLE IA K K ++ Q Sbjct: 969 ILGASQSGFIDSV--GFEMYSQLLEQAIATKQGKSLIRQ 1005 >gi|293366145|ref|ZP_06612832.1| transcription-repair coupling factor [Staphylococcus epidermidis M23864:W2(grey)] gi|291319739|gb|EFE60098.1| transcription-repair coupling factor [Staphylococcus epidermidis M23864:W2(grey)] gi|329737888|gb|EGG74116.1| transcription-repair coupling factor [Staphylococcus epidermidis VCU045] Length = 1166 Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 151/414 (36%), Positives = 225/414 (54%), Gaps = 23/414 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 612 DFPYELTPDQSKSIDEIKGDMERARPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFL 671 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ R+ E + G I++GTH L Sbjct: 672 VPTTILAQQHYETLLERMQDFPVEIQLVSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLG 731 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 732 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSV 791 Query: 448 ITEKPAGRKPIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 792 IETPPENRFPVQTYVLEQNTNFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 840 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 841 KREQLQRLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLI 900 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE A+ FGL+QL+QLRGRVGR I L HP L++ + RL +K TE GF Sbjct: 901 IEEADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLNETAEERLQAIKEFTELGSGF 959 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 IA DL R G +LG +Q G + +L+ +LE A + + I + PD Sbjct: 960 KIAMRDLNIRGAGNLLGKQQHGFIDSV--GFDLYSQMLEEAVNEKRGIKEESPD 1011 >gi|57866056|ref|YP_187737.1| transcription-repair coupling factor [Staphylococcus epidermidis RP62A] gi|81819455|sp|Q5HRQ2|MFD_STAEQ RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|57636714|gb|AAW53502.1| transcription-repair coupling factor [Staphylococcus epidermidis RP62A] Length = 1169 Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 152/415 (36%), Positives = 227/415 (54%), Gaps = 25/415 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 615 DFPYELTPDQSKSIDEIKGDMERARPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFL 674 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ R+ E + G I++GTH L Sbjct: 675 VPTTILAQQHYETLLERMQDFPVEIQLVSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLG 734 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 735 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSV 794 Query: 448 ITEKPAGRKPIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 795 IETPPENRFPVQTYVLEQNTNFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 843 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 844 KREQLQRLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLI 903 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE A+ FGL+QL+QLRGRVGR I L HP L++ + RL +K TE GF Sbjct: 904 IEEADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLNETAEERLQAIKEFTELGSGF 962 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQP-ELHDSLLEIARKDAKHILTQDPD 672 IA DL R G +LG +Q G F+ + +L+ +LE A + + I + PD Sbjct: 963 KIAMRDLNIRGAGNLLGKQQHG---FIDSVGFDLYSQMLEEAVNEKRGIKEESPD 1014 >gi|153870816|ref|ZP_02000135.1| truncated transcription-repair coupling factor [Beggiatoa sp. PS] gi|152072718|gb|EDN69865.1| truncated transcription-repair coupling factor [Beggiatoa sp. PS] Length = 668 Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 145/389 (37%), Positives = 215/389 (55%), Gaps = 25/389 (6%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q+ AI+ ++ DM M R++ GDVG GKT VA+ A AV G Sbjct: 115 QAFAQAFPFEETPDQQEAIQGVVNDMLSTQPMDRLVCGDVGFGKTEVAMRATYIAVMDGQ 174 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ K + + VE ++ + + L+ + GQ I+IGT Sbjct: 175 QTAVLVPTTLLAQQHYQTFKDRFADLPVRVEQLSRFRSKKQQTDTLKAVTEGQVDIVIGT 234 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L QD++Q+ +L LVI+DE+HRFGV+Q+ K T +L +TATPIPR+L + Sbjct: 235 HKLIQDNVQFKRLGLVIIDEEHRFGVKQKEKFKALRTEVDILTLTATPIPRSLNMALSHL 294 Query: 443 IDISKITEKPAGRKPIKTVII----PINRIDEVIERLKVVLSEGKKAYWICPQIE--EKK 496 D+S I P+GR IKT I P+ +IE + L G + Y++ QIE +K Sbjct: 295 RDLSIIASPPSGRLAIKTFIREWQGPL-----IIEAILRELKRGGQVYFLHNQIETIDKI 349 Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556 + +V + + I HG+M + + E VM F + +L+ TT+IE GID Sbjct: 350 ADEVQELVPE---------ARVRIAHGKMRERELEQVMQDFYHRRFNVLVCTTIIETGID 400 Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNT 614 V A+ +II A+ GLAQL+QLRGRVGR + LL HP ++K++ R+ + Sbjct: 401 VPTANTMIINRADKLGLAQLYQLRGRVGRSHHRAYAYLLIPHPKAMTKDAQKRIDAIGAM 460 Query: 615 ED---GFLIAEEDLKQRKEGEILGIKQSG 640 E+ GF++A DL+ R GE+LG +QSG Sbjct: 461 EELGMGFMLATHDLEIRGAGELLGGEQSG 489 >gi|165923977|ref|ZP_02219809.1| transcription-repair coupling factor [Coxiella burnetii RSA 334] gi|165916585|gb|EDR35189.1| transcription-repair coupling factor [Coxiella burnetii RSA 334] Length = 1157 Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 143/379 (37%), Positives = 211/379 (55%), Gaps = 19/379 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T Q +AI D++ DMS K M R++ GDVG GKT VA+ A AV+ Q ++ P Sbjct: 612 PFEETPDQSAAINDVIVDMSSKRSMDRLICGDVGFGKTEVAMQAAFIAVQNNKQVAVLVP 671 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QH+ + + + + I+ Q R++ + +A G+ IIIGTH L Sbjct: 672 TTLLAEQHFYNFQDRFADWPVRIAAISRLRTQKQRQQITQELAEGKIDIIIGTHKLLSKD 731 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ L L+IVDE+HRFGV Q+ ++ +L +TATPIPRTL ++ G D+S IT Sbjct: 732 IRFKDLGLLIVDEEHRFGVTQKERIKSLRAHVDILTLTATPIPRTLNMSLSGIRDLSLIT 791 Query: 450 EKPAGRKPIKTVI---IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 PA R +KT + P+ I E I R + G + Y++ + + + E+ Sbjct: 792 TPPAKRLSVKTFVHYYSPV-LIREAILRENL---RGGQVYFLHNDV-----ATLAATAEK 842 Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 ++ + +AI HG+M + D E VM F + LL+ TT+IE GID+ A+ III Sbjct: 843 LRTIIPE--ARLAIAHGQMRERDLERVMSDFYHQKYNLLVCTTIIESGIDIPTANTIIIN 900 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIA 621 A+ FGLAQLHQLRGRVGR + LL L+ ++ RLS + +D GF +A Sbjct: 901 RADRFGLAQLHQLRGRVGRSHHQAYAYLLIPDQEALTADAEKRLSAISQLDDLGVGFNLA 960 Query: 622 EEDLKQRKEGEILGIKQSG 640 DL+ R GE+LG++QSG Sbjct: 961 THDLEIRGAGELLGVEQSG 979 >gi|164685710|ref|ZP_01946737.2| transcription-repair coupling factor [Coxiella burnetii 'MSU Goat Q177'] gi|212218583|ref|YP_002305370.1| transcription-repair coupling factor [Coxiella burnetii CbuK_Q154] gi|164601218|gb|EAX32680.2| transcription-repair coupling factor [Coxiella burnetii 'MSU Goat Q177'] gi|212012845|gb|ACJ20225.1| transcription-repair coupling factor [Coxiella burnetii CbuK_Q154] Length = 1157 Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 143/379 (37%), Positives = 211/379 (55%), Gaps = 19/379 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T Q +AI D++ DMS K M R++ GDVG GKT VA+ A AV+ Q ++ P Sbjct: 612 PFEETPDQSAAINDVIVDMSSKRSMDRLICGDVGFGKTEVAMQAAFIAVQNNKQVAVLVP 671 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QH+ + + + + I+ Q R++ + +A G+ IIIGTH L Sbjct: 672 TTLLAEQHFYNFQDRFADWPVRIAAISRLRTQKQRQQITQELAEGKIDIIIGTHKLLSKD 731 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ L L+IVDE+HRFGV Q+ ++ +L +TATPIPRTL ++ G D+S IT Sbjct: 732 IRFKDLGLLIVDEEHRFGVTQKERIKSLRAHVDILTLTATPIPRTLNMSLSGIRDLSLIT 791 Query: 450 EKPAGRKPIKTVI---IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 PA R +KT + P+ I E I R + G + Y++ + + + E+ Sbjct: 792 TPPAKRLSVKTFVHYYSPV-LIREAILRENL---RGGQVYFLHNDV-----ATLAATAEK 842 Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 ++ + +AI HG+M + D E VM F + LL+ TT+IE GID+ A+ III Sbjct: 843 LRTIIPE--ARLAIAHGQMRERDLERVMSDFYHQKYNLLVCTTIIESGIDIPTANTIIIN 900 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIA 621 A+ FGLAQLHQLRGRVGR + LL L+ ++ RLS + +D GF +A Sbjct: 901 RADRFGLAQLHQLRGRVGRSHHQAYAYLLIPDQEALTADTEKRLSAISQLDDLGVGFNLA 960 Query: 622 EEDLKQRKEGEILGIKQSG 640 DL+ R GE+LG++QSG Sbjct: 961 THDLEIRGAGELLGVEQSG 979 >gi|332971662|gb|EGK10611.1| transcription-repair coupling factor [Psychrobacter sp. 1501(2011)] Length = 1243 Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 160/465 (34%), Positives = 246/465 (52%), Gaps = 25/465 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W ++ L +A ++ + R+Q K+ GI V+ + F T Q Sbjct: 637 KWDKAKQKALEQIHDVAAELLNMQARRQAKE--GIHFKVDTAQYELFASQFAFEETPDQA 694 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI ++ DM Q M R++ GDVG GKT VA+ A AV +G Q ++ P +LA QH Sbjct: 695 NAIDAVIHDMKQSKPMDRLICGDVGFGKTEVAMRAAFIAVNSGYQVAVLVPTTLLAGQHE 754 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + K + I VE ++ + ++ + LE +A G+ I+IGTH L Q +++ L L+ Sbjct: 755 DNFKDRFADWPIKVETLSRFGGKKYQDQVLEDLAAGKVDIVIGTHKLLQKDVKFANLGLM 814 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+HRFGV+ + + + L MTATPIPRTL + G D+S I PA R I Sbjct: 815 IVDEEHRFGVRHKELIKALQSDVDSLSMTATPIPRTLNMALTGMRDMSIIATPPARRLAI 874 Query: 459 KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515 KT + + + ++++ E + L G + Y + + E+ N R +V Sbjct: 875 KTFV--MQKTNQLMKEAILRELLRGGQVYLLHNDVASIERMAENIRELVPE--------- 923 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + + + HG+M++ E VM F + +L+ TT+IE GIDV +A+ IIIE A+ FGLAQ Sbjct: 924 ARVGVAHGQMNERGLEQVMQQFYHKKFNVLVCTTIIETGIDVPNANTIIIERADKFGLAQ 983 Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630 LHQLRGRVGR + C LL L ++ RL+ ++ GF++A EDL+ R Sbjct: 984 LHQLRGRVGRSHHQAYCYLLVPSIKGLKGDAKKRLNAIERANTLGAGFMLASEDLEIRGA 1043 Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 GEILG +QSG + + L+ +LE A K K ++PDL + Sbjct: 1044 GEILGKQQSGNMQAIGF--SLYMDMLERATKAIK--AGKEPDLNT 1084 >gi|226939558|ref|YP_002794631.1| Mfd [Laribacter hongkongensis HLHK9] gi|226714484|gb|ACO73622.1| Mfd [Laribacter hongkongensis HLHK9] Length = 1131 Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 153/427 (35%), Positives = 230/427 (53%), Gaps = 31/427 (7%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q++AI+ ++ DM+ M R++ GDVG GKT VAL A A G Q ++ P Sbjct: 589 FEETPDQQAAIEAVIHDMTAGRPMDRLVCGDVGFGKTEVALRAAFVAAMGGKQVAVLVPT 648 Query: 331 GILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHY+ F ++ IVE+ + ++ AL +A G I+IGTH L Q Sbjct: 649 TLLAEQHYQNFADRFADWPLKIVELSRFRSAK-EQKAALAGLADGSVDIVIGTHRLVQPD 707 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +++ +L LVI+DE+HRFGV+Q+ +L + VL +TATPIPRTL ++ G D S I Sbjct: 708 VEFARLGLVIIDEEHRFGVRQKEQLKRLRANVDVLTLTATPIPRTLAMSLEGLRDFSVIA 767 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R +KT + P N I E + R L G + +++ ++E ++ E+ Sbjct: 768 TAPNRRLSVKTFVTPQNNGVIREAVLR---ELKRGGQVFFLYNEVE-----TIENMREKL 819 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 L + + + HG+M + + E VM F +L+ +T+IE GID+ +A+ III Sbjct: 820 TELLPE--ARVQVAHGQMRERELEQVMRDFNQQRFNVLLCSTIIETGIDIPNANTIIIHR 877 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEED 624 A+ FGLAQLHQLRGRVGR + LL ++K++ RL ++ ED GF +A D Sbjct: 878 ADRFGLAQLHQLRGRVGRSHHQAYAYLLTGEGMTKDAMKRLEAIQMMEDLGSGFYLAMHD 937 Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHD---SLLEIARKDAKHILT--QDPDLTSVRGQ 679 L+ R GE+LG QSG E+H+ SL K A L Q+PDL + G Sbjct: 938 LEIRGAGEVLGEGQSG---------EMHEIGFSLYTEMLKSAVRALKKGQEPDLDAPLGV 988 Query: 680 SIRILLY 686 + + L+ Sbjct: 989 TTEVNLH 995 >gi|117924949|ref|YP_865566.1| transcription-repair coupling factor [Magnetococcus sp. MC-1] gi|117608705|gb|ABK44160.1| transcription-repair coupling factor [Magnetococcus sp. MC-1] Length = 1198 Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 150/444 (33%), Positives = 236/444 (53%), Gaps = 22/444 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ ++ Q + G+ + + Q+ PF T Q AI+ +L+DM+ M R++ Sbjct: 607 LVAIQAQREATQGVVYSGPDALYQEFASTFPFEETVDQAKAIEAVLEDMASPKAMDRLVC 666 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VAL A A G Q I+ P ILAQQHYE K I V+I++ Sbjct: 667 GDVGFGKTEVALRATFRAAMDGKQVAILVPTTILAQQHYENFAKRLAGYPIKVDILSRFR 726 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 ++ +E + HG +I+GTH L Q +++ L L++VDE+ RFGV + ++ Sbjct: 727 TPKEQKATIEAVGHGTIDVIVGTHRLLQTDVKFKDLGLLVVDEEQRFGVSHKERIKNLRA 786 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 +L +TATPIPRTL + G DIS I PA R I+T+I ++ +V E + L Sbjct: 787 TLDILTLTATPIPRTLNMAMAGVRDISIIASPPADRLAIRTIITHYDK-QQVREAILREL 845 Query: 480 SEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537 G + +++ Q++ E+K +V + + + HG+M + E VM F Sbjct: 846 YRGGQVFYVHNQVQDIERKAQEIAELVPE---------ARVGVAHGQMRENQLEKVMMEF 896 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL-- 595 T +L+ TT++E G+D+ A+ III+ A+ FGLAQLHQLRGRVGR + + +L Sbjct: 897 YRQTFNILVCTTIVENGVDIPTANTIIIDRADKFGLAQLHQLRGRVGRSKHRAYAYMLVP 956 Query: 596 YHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQP 649 + L+K++ RL L++ + GF++A DL+ R G ILG +QSG K F + Sbjct: 957 HLRRLTKHAEKRLEALESLGELGAGFMLATHDLEIRGAGNILGDEQSGQIKEVGFELYNQ 1016 Query: 650 ELHDSL--LEIARKDAKHILTQDP 671 L +++ L+ AR + + + P Sbjct: 1017 MLREAVVALQTARAQGRDLASTTP 1040 >gi|189423769|ref|YP_001950946.1| transcription-repair coupling factor [Geobacter lovleyi SZ] gi|189420028|gb|ACD94426.1| transcription-repair coupling factor [Geobacter lovleyi SZ] Length = 1165 Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 138/379 (36%), Positives = 218/379 (57%), Gaps = 15/379 (3%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 P+ T Q SAI+D+L DM M R++ GDVG GKT VAL A AV G Q ++ Sbjct: 621 TFPWEETPDQLSAIQDVLGDMQHSRPMDRLVCGDVGYGKTEVALRAAFKAVLDGKQVALL 680 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQH+E ++ + +E+++ ++ +LER+ G+ IIIGTH L Q Sbjct: 681 VPTTILAQQHFETFSTRLKDYPVSIEMLSRFRSVKEQKISLERLKEGKLDIIIGTHRLLQ 740 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + + L L+IVDE+ RFGV+ + +L Q + ++ +TATPIPRTL L+ LG D+S Sbjct: 741 KDVSFKDLGLLIVDEEQRFGVKDKERLKQYRASVDIMTLTATPIPRTLHLSMLGIRDLSI 800 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 I P R+ IKTV+ D++I + + L G + +++ + + V ER Sbjct: 801 IDTPPVDRQAIKTVV--ARDTDDLIRDAITRELERGGQVFYV-----HNRAHSIGIVAER 853 Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 L + I++ HG+M + + E VM +F +G LL+ TT+IE G+D+ A+ ++++ Sbjct: 854 LRQLVPQ--ARISVAHGQMEEKELEKVMLTFMHGQSDLLLTTTIIESGLDIPRANTMLVD 911 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIA 621 A+ FGL+QL+QLRGR+GR S LL +++++ RL ++++ + GF IA Sbjct: 912 RADTFGLSQLYQLRGRIGRSTVKSYAYLLIPGQGSITQDARERLKIIQDISELGAGFRIA 971 Query: 622 EEDLKQRKEGEILGIKQSG 640 DL+ R G++LG +QSG Sbjct: 972 THDLELRGAGDMLGPRQSG 990 >gi|325202005|gb|ADY97459.1| transcription-repair coupling factor [Neisseria meningitidis M01-240149] gi|325208243|gb|ADZ03695.1| transcription-repair coupling factor [Neisseria meningitidis NZ-05/33] Length = 1227 Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Sbjct: 672 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 731 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F ++ + + N +A + ALE +A G I+IG Sbjct: 732 QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 790 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G Sbjct: 791 THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 850 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ Sbjct: 851 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 904 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ ER +L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 905 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 962 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III A+ FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF Sbjct: 963 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1022 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K + PDL + G Sbjct: 1023 TLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1078 Query: 679 QSIRILLY 686 + I L+ Sbjct: 1079 ITTEIKLH 1086 >gi|313668421|ref|YP_004048705.1| transcription-repair coupling factor [Neisseria lactamica ST-640] gi|313005883|emb|CBN87339.1| transcription-repair coupling factor [Neisseria lactamica 020-06] Length = 1164 Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Sbjct: 607 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 666 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F ++ + + N +A + ALE +A G I+IG Sbjct: 667 QVAVLAPTTLLVEQHAQNFADRFADFPVKVAGLSRFNNSKA-TKAALEGMADGTVDIVIG 725 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G Sbjct: 726 THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLCANVDILTMTATPIPRTLSMALEG 785 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ Sbjct: 786 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 839 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ ER +L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 840 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIHNAN 897 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III A+ FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF Sbjct: 898 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 957 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K + PDL + G Sbjct: 958 TLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1013 Query: 679 QSIRILLY 686 + I L+ Sbjct: 1014 ITTEIKLH 1021 >gi|146329097|ref|YP_001209598.1| transcription-repair coupling factor [Dichelobacter nodosus VCS1703A] gi|146232567|gb|ABQ13545.1| transcription-repair coupling factor [Dichelobacter nodosus VCS1703A] Length = 1117 Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 151/380 (39%), Positives = 214/380 (56%), Gaps = 23/380 (6%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T Q++AI +L D+ Q M RI+ GDVG GKT VA+ A AAV AG Q I+ P Sbjct: 565 YETTPDQQAAIDAVLNDLQQAKPMDRIVCGDVGFGKTEVAMRAAYAAVLAGYQCAIITPT 624 Query: 331 GILAQQH-YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA QH + F+ +++ I I P A +R ++ + G I+IGTH L Q Sbjct: 625 TLLADQHVHNFLDRFSHIAVRIAAISRFKTP-AEQRAIVQSLRDGTIDIVIGTHRLLQKD 683 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I + +L LVIVDE+HRFGV+ + L ++L +TATPIPRTL L G D+S I Sbjct: 684 IAFARLGLVIVDEEHRFGVKHKEALKSLRADVNLLTLTATPIPRTLNLALSGLRDLSIIA 743 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 PAGR+ I+T+I + I+E ER L+ G + Y++ N S ++R Sbjct: 744 TAPAGRQSIQTIISQYDPIVIEEACER---ELNRGGQIYFL---------HNDVSSIDRI 791 Query: 508 -NSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 +L E + IA+ HG++ + E +M F N LL+A+T+IE GID+ +A+ III Sbjct: 792 ARALSEQLPQARIAVAHGQLRERALEKIMQDFYNRHYDLLVASTIIESGIDIPNANTIII 851 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLI 620 A+ GLAQLHQLRGRVGR + L+ L+K++ RLS + GFL+ Sbjct: 852 NRADKLGLAQLHQLRGRVGRSHHQAYAYLITPAWQTLNKDAQRRLSAFTELDSLGAGFLL 911 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A +DL+ R GEILG +QSG Sbjct: 912 ASQDLEIRGAGEILGDEQSG 931 >gi|212212451|ref|YP_002303387.1| transcription-repair coupling factor [Coxiella burnetii CbuG_Q212] gi|212010861|gb|ACJ18242.1| transcription-repair coupling factor [Coxiella burnetii CbuG_Q212] Length = 1157 Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 143/379 (37%), Positives = 211/379 (55%), Gaps = 19/379 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T Q +AI D++ DMS K M R++ GDVG GKT VA+ A AV+ Q ++ P Sbjct: 612 PFEETPDQSAAINDVIVDMSSKRSMDRLICGDVGFGKTEVAMQAAFIAVQNNKQVAVLVP 671 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QH+ + + + + I+ Q R++ + +A G+ IIIGTH L Sbjct: 672 TTLLAEQHFYNFQDRFADWPVRIAAISRLRTQKQRQQITQELAEGKIDIIIGTHKLLSKD 731 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ L L+IVDE+HRFGV Q+ ++ +L +TATPIPRTL ++ G D+S IT Sbjct: 732 IRFKDLGLLIVDEEHRFGVTQKERIKSLRAHVDILTLTATPIPRTLNMSLSGIRDLSLIT 791 Query: 450 EKPAGRKPIKTVI---IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 PA R +KT + P+ I E I R + G + Y++ + + + E+ Sbjct: 792 TPPAKRLSVKTFVHDYSPV-LIREAILRENL---RGGQVYFLHNDV-----ATLAATAEK 842 Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 ++ + +AI HG+M + D E VM F + LL+ TT+IE GID+ A+ III Sbjct: 843 LRTIIPE--ARLAIAHGQMRERDLERVMSDFYHQKYNLLVCTTIIESGIDIPTANTIIIN 900 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIA 621 A+ FGLAQLHQLRGRVGR + LL L+ ++ RLS + +D GF +A Sbjct: 901 RADRFGLAQLHQLRGRVGRSHHQAYAYLLIPDQEALTADAEKRLSAISQLDDLGVGFNLA 960 Query: 622 EEDLKQRKEGEILGIKQSG 640 DL+ R GE+LG++QSG Sbjct: 961 THDLEIRGAGELLGVEQSG 979 >gi|294668965|ref|ZP_06734052.1| transcription-repair coupling factor [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309138|gb|EFE50381.1| transcription-repair coupling factor [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 1072 Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 151/428 (35%), Positives = 235/428 (54%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Sbjct: 517 QAFADGFGYEETEDQAAAISAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 576 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F+ ++ + + N +A + ALE +A G I+IG Sbjct: 577 QVAVLAPTTLLVEQHAQNFVDRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 635 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G Sbjct: 636 THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 695 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ Sbjct: 696 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 749 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ ER +L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 750 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 807 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III A+ FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF Sbjct: 808 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 867 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K + PDL + G Sbjct: 868 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 923 Query: 679 QSIRILLY 686 + I L+ Sbjct: 924 ITTEIKLH 931 >gi|87121321|ref|ZP_01077211.1| Transcription-repair coupling factor [Marinomonas sp. MED121] gi|86163478|gb|EAQ64753.1| Transcription-repair coupling factor [Marinomonas sp. MED121] Length = 1137 Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 210/382 (54%), Gaps = 19/382 (4%) Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 + PF T Q+ AI ++QDM K M R++ GDVG GKT VA+ A AV+ G Q + Sbjct: 589 QGFPFEETPDQQLAISAVIQDMVSKKPMDRLVCGDVGFGKTEVAMRAAFMAVQGGKQVAV 648 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 + P +LAQQHYE + I VE+++ A+ER+ G+A I++GTH L Sbjct: 649 LVPTTLLAQQHYENFCDRFADWPIEVELLSRFRSGKQTNAAIERLEQGKADIVVGTHKLI 708 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 Q I+Y L LVI+DE+HRFGV+Q+ + + +L +TATPIPRTL ++ G D+S Sbjct: 709 QGDIKYANLGLVIIDEEHRFGVKQKDQFKALRSEVDILTLTATPIPRTLNMSLSGIRDLS 768 Query: 447 KITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504 I PA R + T + + + E I R L G + Y++ ++ +++ Sbjct: 769 IIATPPAKRLSVNTFVKKKDNHTVKEAILR---ELHRGGQVYFL--------HNDVQTIA 817 Query: 505 ERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + L E I I HG+M + D E VM F + +L+ +T+IE GID+ +A+ I Sbjct: 818 KAAEELAELIPEGRILIGHGQMRERDLEQVMSDFYHKRANILVCSTIIETGIDIPNANTI 877 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GF 618 II A+ FGLAQLHQLRGRVGR + LL ++K++ RL ++ + GF Sbjct: 878 IINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEDRNVTKDAQKRLEAIQLADTLGAGF 937 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG QSG Sbjct: 938 TLATHDLEIRGTGELLGEGQSG 959 >gi|284799822|ref|ZP_05984959.2| transcription-repair coupling factor [Neisseria subflava NJ9703] gi|284796912|gb|EFC52259.1| transcription-repair coupling factor [Neisseria subflava NJ9703] Length = 1164 Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Sbjct: 609 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 668 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F ++ + + N +A + ALE +A G I+IG Sbjct: 669 QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 727 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G Sbjct: 728 THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 787 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ Sbjct: 788 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 841 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ ER +L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 842 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 899 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III A+ FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF Sbjct: 900 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 959 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K + PDL + G Sbjct: 960 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1015 Query: 679 QSIRILLY 686 + I L+ Sbjct: 1016 ITTEIKLH 1023 >gi|242241588|ref|ZP_04796033.1| transcription-repair coupling factor [Staphylococcus epidermidis W23144] gi|242234969|gb|EES37280.1| transcription-repair coupling factor [Staphylococcus epidermidis W23144] Length = 1166 Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 151/414 (36%), Positives = 225/414 (54%), Gaps = 23/414 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 612 DFPYELTPDQSKSIDEIKGDMEKARPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFL 671 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ R+ E + G I++GTH L Sbjct: 672 VPTTILAQQHYETLLERMQDFPVEIQLVSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLG 731 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 732 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSV 791 Query: 448 ITEKPAGRKPIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 792 IETPPENRFPVQTYVLEQNTNFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 840 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 841 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLI 900 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE A+ FGL+QL+QLRGRVGR I L HP L++ + RL +K TE GF Sbjct: 901 IEEADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLNETAEERLQAIKEFTELGSGF 959 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 IA DL R G +LG +Q G + +L+ +LE A + + I + PD Sbjct: 960 KIAMRDLNIRGAGNLLGKQQHGFIDSV--GFDLYSQMLEEAVNEKRGIKEESPD 1011 >gi|262066822|ref|ZP_06026434.1| transcription-repair coupling factor [Fusobacterium periodonticum ATCC 33693] gi|291379488|gb|EFE87006.1| transcription-repair coupling factor [Fusobacterium periodonticum ATCC 33693] Length = 978 Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 141/377 (37%), Positives = 220/377 (58%), Gaps = 17/377 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF+ T Q AI+D+ +DM M R++ GDVG GKT VA+ A A+ G Q V++ P Sbjct: 452 PFTETPGQLKAIEDVKRDMESGKVMDRLVCGDVGYGKTEVAIRAAFKAIMDGKQVVLLVP 511 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHYE + +N I +EI++ + + ++L++I + A +IIGTH L D Sbjct: 512 TTVLAEQHYERFSERFKNYPINIEILSRVQTKKEQEESLKKIENASADLIIGTHRLLSDD 571 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I+Y + L+I+DE+ +FGV+ + KL + +L +TATPIPRTL L+ LG D+S I Sbjct: 572 IKYKDIGLLIIDEEQKFGVKAKEKLKKLKGDIDILTLTATPIPRTLNLSLLGIRDLSVID 631 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 P GR+ I+T I N+ I ++I L V EG + ++I ++ E K R ++ Sbjct: 632 TSPEGRQKIQTEYIDNNKDLIRDII--LTEVSREG-QVFYIFNSVKRIEMKSKELRELLP 688 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + + IHG+M D + + +F+NG +LIATT+IE GID+ +A+ +II Sbjct: 689 DY--------IKVDYIHGQMLARDIKRAIHNFENGNTDVLIATTIIENGIDIENANTMII 740 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEE 623 E E GL+Q++QLRGR+GR + S C +L + ++N+ R ++ ++ G ++ E Sbjct: 741 EGVEKLGLSQVYQLRGRIGRSNKKSYCYMLMNENKTRNAQKREESIREFDNLTGIDLSME 800 Query: 624 DLKQRKEGEILGIKQSG 640 D K R GEILG KQ G Sbjct: 801 DSKIRGVGEILGEKQHG 817 >gi|323340106|ref|ZP_08080371.1| transcription-repair coupling factor [Lactobacillus ruminis ATCC 25644] gi|323092483|gb|EFZ35090.1| transcription-repair coupling factor [Lactobacillus ruminis ATCC 25644] Length = 1179 Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 144/427 (33%), Positives = 235/427 (55%), Gaps = 15/427 (3%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ + E +A ++ L R++ +K P + ++ P++ T Q Sbjct: 570 EWEKTKRKVASKLEDIADELVELYSRRESEKGHAFPKD--DSYQKEFEDAFPYTETPDQL 627 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + K+I DM ++ M R+L GDVG GKT VAL A AVE G Q +AP +L QQHY Sbjct: 628 RSAKEIKLDMEKEKPMDRLLIGDVGYGKTEVALRAAFKAVEDGKQVAFIAPTTLLVQQHY 687 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + + + + +++ ++ L ++ +G+ II+GTH L +++ L L+ Sbjct: 688 ETMLSRFEGFPVEIGVLSRFSTPRQVKETLLKLKNGEIDIIVGTHRLLSKDVKFADLGLL 747 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + KL + T+ VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 748 IIDEEQRFGVKHKEKLKELKTSVDVLTLTATPIPRTLNMSMLGVRDLSVIETAPLNRYPI 807 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518 +T + N D V ++ +S G + +++ ++ + +VVE N++ + I Sbjct: 808 QTYAMEQN-YDVVAAGIRREMSRGGQVFYLHNRVH-----DIETVVETLNTIVPE--ARI 859 Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578 A +HG+MS+ E ++ F G +L+ TT+IE G+D+ + + + +E+A+ GLAQL+Q Sbjct: 860 AYVHGQMSETQMEKILADFIAGEYDVLVTTTIIETGVDIPNVNTLFVEDADRMGLAQLYQ 919 Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEI 633 LRGRVGR ++ +Y P L+++ RL +K+ TE GF IA DL R G + Sbjct: 920 LRGRVGRSNRVAYAYFMYQPDKVLTEDGEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNM 979 Query: 634 LGIKQSG 640 LG +Q G Sbjct: 980 LGKQQHG 986 >gi|241760119|ref|ZP_04758217.1| transcription-repair coupling factor [Neisseria flavescens SK114] gi|241319573|gb|EER56003.1| transcription-repair coupling factor [Neisseria flavescens SK114] Length = 1134 Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Sbjct: 579 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 638 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F ++ + + N +A + ALE +A G I+IG Sbjct: 639 QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 697 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G Sbjct: 698 THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 757 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ Sbjct: 758 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 811 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ ER +L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 812 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 869 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III A+ FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF Sbjct: 870 TIIINRADKFGLAQLHQLRGRVGRSHHQAYSYLLTPEYITKDAEKRLDAIAAADELGAGF 929 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K + PDL + G Sbjct: 930 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 985 Query: 679 QSIRILLY 686 + I L+ Sbjct: 986 ITTEIKLH 993 >gi|319399660|gb|EFV87914.1| transcription-repair coupling factor [Staphylococcus epidermidis FRI909] Length = 1166 Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 151/414 (36%), Positives = 225/414 (54%), Gaps = 23/414 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 612 DFPYELTPDQSKSIDEIKGDMERARPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFL 671 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ R+ E + G I++GTH L Sbjct: 672 VPTTILAQQHYETLLERMQDFPVEIQLVSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLG 731 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 732 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSV 791 Query: 448 ITEKPAGRKPIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 792 IETPPENRFPVQTYVLEQNTNFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 840 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 841 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLI 900 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE A+ FGL+QL+QLRGRVGR I L HP L++ + RL +K TE GF Sbjct: 901 IEEADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLNETAEERLQAIKEFTELGSGF 959 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 IA DL R G +LG +Q G + +L+ +LE A + + I + PD Sbjct: 960 KIAMRDLNIRGAGNLLGKQQHGFIDSV--GFDLYSQMLEEAVNEKRGIKEESPD 1011 >gi|291550022|emb|CBL26284.1| transcription-repair coupling factor [Ruminococcus torques L2-14] Length = 1118 Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 140/372 (37%), Positives = 217/372 (58%), Gaps = 17/372 (4%) Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 Q AI+D +DM M R++ GDVG GKT +A+ A AV+ G Q V + P ILAQ Sbjct: 570 DQLRAIEDTKKDMESTKIMDRLICGDVGYGKTEIAIRAAFKAVQEGKQVVYLVPTTILAQ 629 Query: 336 QHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394 QHY FI+++ ++ + V++++ QA ++K +E + G I+IGTH + I Y Sbjct: 630 QHYNTFIQRF-KDFPVRVDLMSRFRTQAQQKKTVEDLKKGLVDIVIGTHRVLSKDIGYKD 688 Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454 L L+I+DE+ RFGV + K+ + VL +TATPIPRTL ++ +G D+S + E P Sbjct: 689 LGLLIIDEEQRFGVTHKEKIKKLRENIDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPMD 748 Query: 455 RKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 R PI+T ++ N DE++ E ++ L+ G + Y++ ++E N + R L Sbjct: 749 RMPIQTYVMEYN--DEMVREAIERELARGGQVYYVYNRVE-----NIADLALRVQKLVPD 801 Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 S A HG+M++ E +M F NG +L++TT+IE G+D+ +A+ +II++A+ FGL Sbjct: 802 ARVSYA--HGQMNEHQLEDIMYDFINGDIDVLVSTTIIETGLDIANANTMIIQDADRFGL 859 Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628 +QL+QLRGRVGR ++ LLY L + + RL+ ++ D GF IA DL+ R Sbjct: 860 SQLYQLRGRVGRSNRMAYAFLLYQRDKMLKEVAEKRLAAIREFTDLGSGFKIAMRDLEIR 919 Query: 629 KEGEILGIKQSG 640 G +LG QSG Sbjct: 920 GAGNLLGESQSG 931 >gi|308389402|gb|ADO31722.1| transcription-repair coupling factor [Neisseria meningitidis alpha710] Length = 1227 Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Sbjct: 672 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 731 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F ++ + + N +A + ALE +A G I+IG Sbjct: 732 QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 790 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G Sbjct: 791 THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 850 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ Sbjct: 851 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 904 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ ER +L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 905 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 962 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III A+ FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF Sbjct: 963 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1022 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K + PDL + G Sbjct: 1023 TLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1078 Query: 679 QSIRILLY 686 + I L+ Sbjct: 1079 ITTEIKLH 1086 >gi|319638036|ref|ZP_07992800.1| transcription-repair coupling factor [Neisseria mucosa C102] gi|317400681|gb|EFV81338.1| transcription-repair coupling factor [Neisseria mucosa C102] Length = 1134 Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 150/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Sbjct: 579 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 638 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F ++ + + N +A + ALE +A G I+IG Sbjct: 639 QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 697 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD +++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G Sbjct: 698 THKLVQDDVKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 757 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ Sbjct: 758 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 811 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ ER +L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 812 NMRERLEALLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 869 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III A+ FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF Sbjct: 870 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 929 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K + PDL + G Sbjct: 930 TLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 985 Query: 679 QSIRILLY 686 + I L+ Sbjct: 986 ITTEIKLH 993 >gi|302763495|ref|XP_002965169.1| hypothetical protein SELMODRAFT_83786 [Selaginella moellendorffii] gi|300167402|gb|EFJ34007.1| hypothetical protein SELMODRAFT_83786 [Selaginella moellendorffii] Length = 693 Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 140/385 (36%), Positives = 218/385 (56%), Gaps = 16/385 (4%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQ-KNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 K P++PT Q A D+ +D++ + M R++ GDVG GKT VA+ A+ AV A Sbjct: 131 KFAGKFPYTPTPDQIKAFLDVERDLTDAETPMDRLICGDVGFGKTEVAMRAIFYAVSAKK 190 Query: 323 QAVIMAPIGILAQQHYEFIK-KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q +++AP +LA+QH+E IK ++ I V +++ RR + I G +I +G Sbjct: 191 QVMVLAPTTVLAKQHHESIKERFANFPDIKVALLSRFQNNVDRRAVIAGINDGVVNIAVG 250 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH+L ++IQY + L++VDE+ RFGV Q+ K++ T +L ++ATPIPRTL + G Sbjct: 251 THSLLGNNIQYENVGLLVVDEEQRFGVAQKEKISTLKTTVDILTLSATPIPRTLHMALSG 310 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S +T P R+PIKT + ++ D V + +K L + +++ P+I + N Sbjct: 311 FRDASLMTTPPPERRPIKTHVCVYSQ-DMVKDAIKAELDRRGQVFYVVPRI----QGNME 365 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 S ++ L SIA HG+ + E+ M F +L+ T +IE G+D+ + Sbjct: 366 STEKKLKLLVPGVQVSIA--HGKKCATELEATMTKFTEKGTSILLCTNIIESGLDIPTVN 423 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNT---E 615 II+EN + FGLAQ++QLRGRVGR ++++ +L HPP LS ++ RLS L++ Sbjct: 424 TIIVENVQMFGLAQIYQLRGRVGRADKVAHAYML-HPPKDFLSSDALERLSALEDCCALG 482 Query: 616 DGFLIAEEDLKQRKEGEILGIKQSG 640 GF +AE D+ R G I G KQSG Sbjct: 483 QGFQLAERDMAIRGIGSIFGEKQSG 507 >gi|125622895|ref|YP_001031378.1| transcription-repair coupling factor [Lactococcus lactis subsp. cremoris MG1363] gi|124491703|emb|CAL96622.1| Transcription-repair coupling factor (TRCF) [Lactococcus lactis subsp. cremoris MG1363] gi|300069633|gb|ADJ59033.1| transcription-repair coupling factor [Lactococcus lactis subsp. cremoris NZ9000] Length = 1180 Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 142/437 (32%), Positives = 233/437 (53%), Gaps = 23/437 (5%) Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273 K D W E ++ + L +Q KK G + + ++ + Sbjct: 570 KLNDGRWRKTMSSVSKQVEDISDDLIKLYAERQAKK--GFAFSPDDASQEEFDSGFSYVE 627 Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T+ Q +I +I DM + M R+L GDVG GKT VA+ A A+ G Q ++ P +L Sbjct: 628 TEDQIRSINEIKHDMELERPMDRLLVGDVGFGKTEVAMRAAFKAINDGKQVAVLVPTTVL 687 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 A+QH+ + N + VE+++ + + + L ++ G+ +IIGTH L ++++ Sbjct: 688 AEQHFNNFTERFINFGVNVEVLSRFQTKTQQTEILAKLKKGRVDLIIGTHRLLSKDVEFF 747 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L L+I+DE+ RFGV+ + +L + T VL +TATPIPRTL ++ LG D+S I P Sbjct: 748 DLGLMIIDEEQRFGVKHKERLKELKTQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 807 Query: 454 GRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNS 509 R P++T ++ N + + I R +S G + Y++ +++ E+K S ++ Sbjct: 808 NRYPVQTYVMETNYGVVRDAILR---EISRGGQVYYVYNRVDTIEQKVSQLEELIPE--- 861 Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 + I IHG+M+++ E+ + +F G +L+ATT+IE G+D+ +++ + IENA+ Sbjct: 862 ------ARIGFIHGQMTEVQLENTLLAFIAGDYDVLVATTIIETGVDIPNSNTLFIENAD 915 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEED 624 GL+QL+QLRGRVGR ++ +Y P LS+ S RL +K TE GF IA D Sbjct: 916 MMGLSQLYQLRGRVGRSNRVAYAYFMYRPEKILSEVSEKRLEAIKGFTELGSGFKIAMRD 975 Query: 625 LKQRKEGEILGIKQSGM 641 L R G +LG +QSG Sbjct: 976 LSIRGAGNLLGSEQSGF 992 >gi|261377774|ref|ZP_05982347.1| transcription-repair coupling factor [Neisseria cinerea ATCC 14685] gi|269146063|gb|EEZ72481.1| transcription-repair coupling factor [Neisseria cinerea ATCC 14685] Length = 1134 Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Sbjct: 579 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 638 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F ++ + + N +A + ALE +A G I+IG Sbjct: 639 QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 697 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G Sbjct: 698 THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 757 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ Sbjct: 758 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 811 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ ER +L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 812 NMRERLKTLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 869 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III A+ FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF Sbjct: 870 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 929 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K + PDL + G Sbjct: 930 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 985 Query: 679 QSIRILLY 686 + I L+ Sbjct: 986 ITTEIKLH 993 >gi|197302598|ref|ZP_03167653.1| hypothetical protein RUMLAC_01327 [Ruminococcus lactaris ATCC 29176] gi|197298496|gb|EDY33041.1| hypothetical protein RUMLAC_01327 [Ruminococcus lactaris ATCC 29176] Length = 1117 Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 137/371 (36%), Positives = 213/371 (57%), Gaps = 15/371 (4%) Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 Q AI+D +DM M R++ GDVG GKT VA+ A AV+ G Q V + P ILAQ Sbjct: 571 DQLRAIEDTKKDMESTKVMDRLICGDVGYGKTEVAIRAAFKAVQDGKQVVYLVPTTILAQ 630 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 QHY + ++ + ++++ A ++K +E + G I+IGTH + + Y L Sbjct: 631 QHYNTFIQRLKDFPVRIDLLCRFRTPAQQKKTIEDLKKGLVDIVIGTHRVLSKDVTYKDL 690 Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 L+I+DE+ RFGV + K+ + VL +TATPIPRTL ++ +G D+S + E P R Sbjct: 691 GLLIIDEEQRFGVTHKEKIKKMRENIDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPMDR 750 Query: 456 KPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 PI+T ++ N DE+I E ++ LS G + Y++ ++E + V R L Sbjct: 751 MPIQTYVMEFN--DEMIREAIERELSRGGQVYYVYNRVE-----DIADVAGRVQKLVP-- 801 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 +S++ HG+MS+ + E +M F NG +L++TT+IE G+D+ +A+ +II++A+ FGL+ Sbjct: 802 GASVSFAHGQMSERELEDIMYDFINGEIDVLVSTTIIETGLDIANANTMIIQDADRFGLS 861 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629 QL+QLRGRVGR ++ LLY L + + RL+ ++ D G IA DL+ R Sbjct: 862 QLYQLRGRVGRSSRMAYAFLLYRRDKLLKEVAEKRLAAIREFTDLGSGIKIAMRDLEIRG 921 Query: 630 EGEILGIKQSG 640 G +LG QSG Sbjct: 922 AGNLLGEAQSG 932 >gi|282875433|ref|ZP_06284305.1| transcription-repair coupling factor [Staphylococcus epidermidis SK135] gi|281295790|gb|EFA88312.1| transcription-repair coupling factor [Staphylococcus epidermidis SK135] Length = 1169 Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 151/414 (36%), Positives = 225/414 (54%), Gaps = 23/414 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 615 DFPYELTPDQSKSIDEIKGDMERARPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFL 674 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ R+ E + G I++GTH L Sbjct: 675 VPTTILAQQHYETLLERMQDFPVEIQLVSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLG 734 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 735 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSV 794 Query: 448 ITEKPAGRKPIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 795 IETPPENRFPVQTYVLEQNTNFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 843 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 844 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLI 903 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE A+ FGL+QL+QLRGRVGR I L HP L++ + RL +K TE GF Sbjct: 904 IEEADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLNETAEERLQAIKEFTELGSGF 962 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 IA DL R G +LG +Q G + +L+ +LE A + + I + PD Sbjct: 963 KIAMRDLNIRGAGNLLGKQQHGFIDSV--GFDLYSQMLEEAVNEKRGIKEESPD 1014 >gi|251809809|ref|ZP_04824282.1| transcription-repair coupling factor [Staphylococcus epidermidis BCM-HMP0060] gi|251806677|gb|EES59334.1| transcription-repair coupling factor [Staphylococcus epidermidis BCM-HMP0060] Length = 1166 Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 151/414 (36%), Positives = 225/414 (54%), Gaps = 23/414 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 612 DFPYELTPDQSKSIDEIKGDMERARPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFL 671 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ R+ E + G I++GTH L Sbjct: 672 VPTTILAQQHYETLLERMQDFPVEIQLVSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLG 731 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 732 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSV 791 Query: 448 ITEKPAGRKPIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 792 IETPPENRFPVQTYVLEQNTNFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 840 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 841 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLI 900 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE A+ FGL+QL+QLRGRVGR I L HP L++ + RL +K TE GF Sbjct: 901 IEEADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLNETAEERLQAIKEFTELGSGF 959 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 IA DL R G +LG +Q G + +L+ +LE A + + I + PD Sbjct: 960 KIAMRDLNIRGAGNLLGKQQHGFIDSV--GFDLYSQMLEEAVNEKRGIKEESPD 1011 >gi|209525598|ref|ZP_03274136.1| transcription-repair coupling factor [Arthrospira maxima CS-328] gi|209493931|gb|EDZ94248.1| transcription-repair coupling factor [Arthrospira maxima CS-328] Length = 1167 Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 139/414 (33%), Positives = 227/414 (54%), Gaps = 21/414 (5%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 + LL + + ++ G + Q++ + P+ PT Q +D+ +DM M R+ Sbjct: 584 VDLLKLYAERSQKTGFSYPQDTPWQQEMEDSFPYQPTPDQLKCSQDVKRDMESDRPMDRL 643 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 + GDVG GKT VA+ A+ AV AG Q +AP IL QQHY +K+ I + ++ Sbjct: 644 VCGDVGFGKTEVAIRAIFKAVTAGKQVAFLAPTTILTQQHYHTLKERFAPYPIEIGLLNR 703 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 + ++ +++ G+ II+GTH++ I++ L L++VDE+ RFGV Q+ K+ Sbjct: 704 FRSASEKKLIQQKLTTGEIDIIVGTHSVLSKHIKFRDLGLLVVDEEQRFGVNQKEKIKAL 763 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 T VL +TATPIPRTL + G ++S IT P R+PI+T + P+N+ + + + Sbjct: 764 KTHVDVLTLTATPIPRTLYMALSGIREMSLITTPPPSRRPIQTHLGPLNQ-ETIRAAICQ 822 Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 L G + +++ P+IE E+K + R +V ++ +AI HG+M + ES+M Sbjct: 823 ELDRGGQVFYVVPRIEGIEEKSAAIREMVP---------SARLAIAHGQMEAGELESIML 873 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +F G +L+ TT+IE G+D+ + I++E+A FGL QL+QLRGRVGR + L Sbjct: 874 TFSAGEADILVCTTIIESGLDIPRVNTILVEDAHKFGLGQLYQLRGRVGRAGVQAHAWLF 933 Query: 596 Y------HPPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSG 640 Y L++++ RL +K G+ +A DL+ R G+ILG +QSG Sbjct: 934 YPVKGDGQAALTEDAVKRLRAIKEFTQLGSGYQLAMRDLEIRGAGDILGAQQSG 987 >gi|329733010|gb|EGG69349.1| transcription-repair coupling factor [Staphylococcus epidermidis VCU028] Length = 1166 Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 151/414 (36%), Positives = 225/414 (54%), Gaps = 23/414 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 612 DFPYELTPDQSKSIDEIKGDMERARPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFL 671 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ R+ E + G I++GTH L Sbjct: 672 VPTTILAQQHYETLLERMQDFPVEIQLVSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLG 731 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 732 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSV 791 Query: 448 ITEKPAGRKPIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 792 IETPPENRFPVQTYVLEQNTNFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 840 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 841 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLI 900 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE A+ FGL+QL+QLRGRVGR I L HP L++ + RL +K TE GF Sbjct: 901 IEEADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLNETAEERLQAIKEFTELGSGF 959 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 IA DL R G +LG +Q G + +L+ +LE A + + I + PD Sbjct: 960 KIAMRDLNIRGAGNLLGKQQHGFIDSV--GFDLYSQMLEEAVNEKRGIKEESPD 1011 >gi|329723937|gb|EGG60462.1| transcription-repair coupling factor [Staphylococcus epidermidis VCU144] Length = 1166 Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 151/414 (36%), Positives = 225/414 (54%), Gaps = 23/414 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 612 DFPYELTPDQSKSIDEIKGDMERARPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFL 671 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ R+ E + G I++GTH L Sbjct: 672 VPTTILAQQHYETLLERMQDFPVEIQLVSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLG 731 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 732 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSV 791 Query: 448 ITEKPAGRKPIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 792 IETPPENRFPVQTYVLEQNTNFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 840 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 841 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLI 900 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE A+ FGL+QL+QLRGRVGR I L HP L++ + RL +K TE GF Sbjct: 901 IEEADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLNETAEERLQAIKEFTELGSGF 959 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672 IA DL R G +LG +Q G + +L+ +LE A + + I + PD Sbjct: 960 KIAMRDLNIRGAGNLLGKQQHGFIDSV--GFDLYSQMLEEAVNEKRGIKEESPD 1011 >gi|226943575|ref|YP_002798648.1| transcription-repair coupling factor [Azotobacter vinelandii DJ] gi|226718502|gb|ACO77673.1| transcription-repair coupling factor [Azotobacter vinelandii DJ] Length = 1149 Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 140/378 (37%), Positives = 210/378 (55%), Gaps = 13/378 (3%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + PF T Q++AI + DM M R++ GDVG GKT VA+ A AV +G Q ++ Sbjct: 598 SFPFEETPDQQAAIDAVRTDMLAPRPMDRLICGDVGFGKTEVAMRAAFIAVHSGRQVAVL 657 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + + VE+++ A+ +A G+ I+IGTH L Q Sbjct: 658 VPTTLLAQQHYNSFRDRFADWPVKVEVMSRFKSAKEVEGAIAALAEGKIDIVIGTHKLLQ 717 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D + + L L I+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 718 DDVSFKNLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSI 777 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 I PA R ++T ++ + + E L L G + Y++ ++ + E R + E Sbjct: 778 IATPPARRLSVRTFVME-QQNTLIREALLRELLRGGQVYYLHNEV-KTIEKCARELAELV 835 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + IAI HG+M + + E VM F + +L+A+T+IE GIDV A+ I+IE Sbjct: 836 PE------ARIAIGHGQMRERELEQVMGDFYHKRFNVLVASTIIETGIDVPSANTIVIER 889 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAE 622 A+ FGLAQLHQLRGRVGR + LL P +++++ RL + +D GF++A Sbjct: 890 ADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQMTEDAQKRLEAIAGAQDLGAGFVLAT 949 Query: 623 EDLKQRKEGEILGIKQSG 640 DL+ R GE+LG QSG Sbjct: 950 HDLEIRGAGELLGEGQSG 967 >gi|298369031|ref|ZP_06980349.1| transcription-repair coupling factor [Neisseria sp. oral taxon 014 str. F0314] gi|298283034|gb|EFI24521.1| transcription-repair coupling factor [Neisseria sp. oral taxon 014 str. F0314] Length = 723 Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 152/428 (35%), Positives = 235/428 (54%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Sbjct: 164 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 223 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F ++T + + N +A + ALE +A G I+IG Sbjct: 224 QVAVLAPTTLLVEQHAQNFADRFTDFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 282 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G Sbjct: 283 THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 342 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ Sbjct: 343 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 396 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ ER +L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 397 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 454 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III A+ FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF Sbjct: 455 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 514 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K + PDL + G Sbjct: 515 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 570 Query: 679 QSIRILLY 686 + I L+ Sbjct: 571 ITTEIKLH 578 >gi|325136213|gb|EGC58821.1| transcription-repair coupling factor [Neisseria meningitidis M0579] Length = 1296 Score = 226 bits (576), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Sbjct: 741 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 800 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F ++ + + N +A + ALE +A G I+IG Sbjct: 801 QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 859 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G Sbjct: 860 THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 919 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ Sbjct: 920 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 973 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ ER +L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 974 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 1031 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III A+ FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF Sbjct: 1032 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1091 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K + PDL + G Sbjct: 1092 TLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1147 Query: 679 QSIRILLY 686 + I L+ Sbjct: 1148 ITTEIKLH 1155 >gi|239637489|ref|ZP_04678463.1| transcription-repair coupling factor [Staphylococcus warneri L37603] gi|239596934|gb|EEQ79457.1| transcription-repair coupling factor [Staphylococcus warneri L37603] Length = 1169 Score = 226 bits (576), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 155/446 (34%), Positives = 238/446 (53%), Gaps = 23/446 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + KQ + +G + + + P+ T Q +I++I DM ++ M R+L Sbjct: 587 LIDLYKQREMSVGYQFGPDTEEQSTFELDFPYELTPDQSKSIEEIKGDMERERPMDRLLC 646 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV G Q + P ILAQQHYE + + Q+ + +++I+ Sbjct: 647 GDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPVEIQLISRFR 706 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 ++ E + G I++GTH L I Y L L+IVDE+ RFGV+ + ++ Sbjct: 707 STKEVKETKEGLKSGYVDIVVGTHKLLGKDIHYKDLGLLIVDEEQRFGVRHKERIKTLKN 766 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP--INRIDEVIERLKV 477 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N I E +ER Sbjct: 767 NVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALER--- 823 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDS 536 LS + +++ +++ S+ E+ L ++IA+ HG+M++ D E M S Sbjct: 824 ELSRDGQVFYLYNKVQ--------SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLS 875 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F N +L+ TT+IE G+DV +A+ +IIE A+ FGL+QL+QLRGRVGR I L Sbjct: 876 FINHEYDILVTTTIIETGVDVPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFL- 934 Query: 597 HPP---LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 HP L++ + RL +K TE GF IA DL R G +LG +Q G + + Sbjct: 935 HPANKVLNETAEERLQAIKEFTELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSV--GFD 992 Query: 651 LHDSLLEIARKDAKHILTQDPDLTSV 676 L+ +LE A + + I + PD+ V Sbjct: 993 LYSQMLEEAVNEKRGIKEETPDVPDV 1018 >gi|325132515|gb|EGC55208.1| transcription-repair coupling factor [Neisseria meningitidis M6190] Length = 1232 Score = 226 bits (576), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 151/428 (35%), Positives = 235/428 (54%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Sbjct: 677 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 736 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F ++ + + N +A + ALE +A G I+IG Sbjct: 737 QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGLADGTVDIVIG 795 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD+I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G Sbjct: 796 THKLVQDNIRFKSLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 855 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ Sbjct: 856 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 909 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ ER +L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 910 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 967 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III A+ FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF Sbjct: 968 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1027 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K + PDL + G Sbjct: 1028 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1083 Query: 679 QSIRILLY 686 + I L+ Sbjct: 1084 ITTEIKLH 1091 >gi|148657760|ref|YP_001277965.1| transcription-repair coupling factor [Roseiflexus sp. RS-1] gi|148569870|gb|ABQ92015.1| transcription-repair coupling factor [Roseiflexus sp. RS-1] Length = 1265 Score = 226 bits (576), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 148/429 (34%), Positives = 234/429 (54%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W R+ A + LA ++ L ++Q + G + + + +++ + P+ T Q Sbjct: 616 DWERAKRKARAAVQDLAEELITLYAQRQLAE--GHAFSPDTEWQRELEASFPYVETPDQL 673 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 AI D+ +DM Q M R++ GDVG GKT VAL A AV+ G Q ++AP +L QQHY Sbjct: 674 KAIIDVKRDMEQPQPMDRLVCGDVGFGKTEVALRAAFKAVQDGKQVAVLAPTTVLVQQHY 733 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + +++I+ + + ++R+A G+ IIIGTH L + + L L+ Sbjct: 734 DTFSRRMAAFPVRIDMISRFRSAKEQSEIVQRLARGEIDIIIGTHRLLSKDVVFKDLGLL 793 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 ++DE+ RFGV+ + ++ Q T VL +TATPIPRTL + G D+S I P R PI Sbjct: 794 VIDEEQRFGVRHKERIKQLRTNVDVLTLTATPIPRTLHMALAGIRDLSIIDTPPEDRIPI 853 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 KT ++P + I E I R L G + Y++ +++ + V +R L + Sbjct: 854 KTYVLPYDERLIREAILR---ELDRGGQVYFVHNRVQ-----SIYYVADRLRRLVPE--A 903 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 IA+ HG++ + E VM F G +L+ TT+IE G+DV +A+ III++A +FGLAQL Sbjct: 904 RIAVGHGQLEEHQLERVMLDFFTGRDDVLVCTTIIESGLDVPNANTIIIDDATNFGLAQL 963 Query: 577 HQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 +QLRGRVGR + + L Y P + + RL ++ + GF IA DL+ R G Sbjct: 964 YQLRGRVGRSTQRAYAYLFYKSERPSTPEAQERLRAIQEATELGAGFRIAMRDLEIRGAG 1023 Query: 632 EILGIKQSG 640 +LG +QSG Sbjct: 1024 NLLGAEQSG 1032 >gi|51244134|ref|YP_064018.1| transcription-repair coupling factor [Desulfotalea psychrophila LSv54] gi|50875171|emb|CAG35011.1| related to transcription-repair coupling factor [Desulfotalea psychrophila LSv54] Length = 1184 Score = 226 bits (576), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 142/394 (36%), Positives = 220/394 (55%), Gaps = 27/394 (6%) Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318 G++ Q++ + PF T Q +AI +L D++ N M R++ GDVG GKT VA+ V Sbjct: 612 GQLYQELEESFPFDETAGQLAAINSVLDDLTDANPMDRLVCGDVGYGKTEVAIRGAFKVV 671 Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378 E G QA I+ P +LA+QH + ++ QN + +E + +R+ ++ +A G+ I Sbjct: 672 EDGAQAAILVPTTVLAEQHLKTFRERLQNFPLRIECLNRFRTAKEQREIVKDLAAGKIDI 731 Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438 +IGTH L +Q+ L L+I+DE+HRFGV + +L + +L +TATPIPRTL ++ Sbjct: 732 VIGTHRLLSKDVQFKDLGLLIIDEEHRFGVAHKERLRKMRAEVDILTLTATPIPRTLQMS 791 Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498 L D+S I+ P R+P+KT V E +V+ E I ++ K ++ Sbjct: 792 LLSIRDLSVISSPPEQRRPVKTF---------VAEDDDLVIKEA-----ISRELRRKGQT 837 Query: 499 NF-----RSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552 F +S+ + N + + + IA+ HG+M + E++M SF N +L+ATT+IE Sbjct: 838 FFVHNRVKSIYQIANKIEKLVPDARIAVAHGQMDTKELENIMVSFVNKEVDVLVATTIIE 897 Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL---SKNSYTRLS 609 G+D+ A+ +II A++ GLA+++QLRGRVGR S LL P L SK+S RL Sbjct: 898 SGLDIPSANTMIINRADNLGLAEMYQLRGRVGRSSTQSFAYLLV-PSLDSISKDSRERLR 956 Query: 610 VLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 L + GF +A DL+ R G +LGI QSG Sbjct: 957 ALMECNELGGGFKLAMNDLQIRGGGNLLGISQSG 990 >gi|316984071|gb|EFV63049.1| transcription-repair coupling factor [Neisseria meningitidis H44/76] Length = 1235 Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Sbjct: 680 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 739 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F ++ + + N +A + ALE +A G I+IG Sbjct: 740 QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 798 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G Sbjct: 799 THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 858 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ Sbjct: 859 LRDFSLITTAPSRRLSVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 912 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ ER +L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 913 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 970 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III A+ FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF Sbjct: 971 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1030 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K + PDL + G Sbjct: 1031 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1086 Query: 679 QSIRILLY 686 + I L+ Sbjct: 1087 ITTEIKLH 1094 >gi|325266091|ref|ZP_08132777.1| transcription-repair coupling factor [Kingella denitrificans ATCC 33394] gi|324982729|gb|EGC18355.1| transcription-repair coupling factor [Kingella denitrificans ATCC 33394] Length = 1258 Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 152/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Sbjct: 698 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 757 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F ++ + + N +A + ALE +A G I+IG Sbjct: 758 QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 816 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD I++ L LVI+DE+HRFGV+Q+ +L + VL MTATPIPRTL + G Sbjct: 817 THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDVLTMTATPIPRTLSMALEG 876 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ Sbjct: 877 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 930 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ ER +L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 931 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 988 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III A+ FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF Sbjct: 989 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1048 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K + PDL + G Sbjct: 1049 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1104 Query: 679 QSIRILLY 686 + I L+ Sbjct: 1105 ITTEIKLH 1112 >gi|260772487|ref|ZP_05881403.1| transcription-repair coupling factor [Vibrio metschnikovii CIP 69.14] gi|260611626|gb|EEX36829.1| transcription-repair coupling factor [Vibrio metschnikovii CIP 69.14] Length = 978 Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 138/382 (36%), Positives = 212/382 (55%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI +L DM Q M R++ GDVG GKT VA+ A + Q I+ Sbjct: 424 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVCTDNNKQVAIL 483 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + N I VE+++ +++ ++ +A G+ I++GTH L Sbjct: 484 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQIMQDVAEGKVDIVVGTHKLLS 543 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + + L L+IVDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 544 SDLIFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 603 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503 I PA R IKT + + ++ + R V+ + G + Y++ Q+E EK ++ ++ Sbjct: 604 IATPPARRLAIKTF---VRQHEDSVVRESVLREIMRGGQVYFLHNQVESIEKVAADLEAL 660 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + + + + HG++ + + E +M+ F + +L+ TT+IE GIDV A+ I Sbjct: 661 IPE---------ARVTVAHGQLRERELEQIMNDFYHQRYNVLVCTTIIETGIDVPTANTI 711 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GF 618 II A+ GLAQLHQLRGRVGR + LL HP ++K++ RL + + ED GF Sbjct: 712 IINRADTLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLEAIASLEDLGAGF 771 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG +QSG Sbjct: 772 TLATHDLEIRGAGELLGDEQSG 793 >gi|76797973|ref|ZP_00780232.1| transcription-repair coupling factor [Streptococcus agalactiae 18RS21] gi|76586653|gb|EAO63152.1| transcription-repair coupling factor [Streptococcus agalactiae 18RS21] Length = 727 Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 164/473 (34%), Positives = 256/473 (54%), Gaps = 31/473 (6%) Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266 N +++ R K + + E +A D+LL L R Q + G + + + Sbjct: 116 NTLNDGRFKKAKQRVAKQVEDIA-DDLLK----LYAERSQLQ---GFAFSPDDNMQNDFD 167 Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 + + T+ Q +IK+I QDM M R+L GDVG GKT VA+ A AV Q V+ Sbjct: 168 NDFAYVETEDQLRSIKEIKQDMEGNRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVV 227 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 + P +LAQQH+E K+ N + V++++ + + L+R++ GQ IIIGTH L Sbjct: 228 LVPTTVLAQQHFENFKERFSNYPVTVDVLSRFRSKKEQTDTLKRLSKGQVDIIIGTHRLL 287 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 + + L L+++DE+ RFGV+ + KL + T VL +TATPIPRTL ++ LG D+S Sbjct: 288 SQDVVFSDLGLIVIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLS 347 Query: 447 KITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504 I P R P++T ++ N + E I R + G + +++ +++ ++ Sbjct: 348 VIETPPTNRYPVQTYVLETNPGLVREAIIR---EIDRGGQVFYVYNKVD--------TID 396 Query: 505 ERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 ++ + L E +SI +HG+MS+I E+ + F NG +L+ATT+IE G+D+ + + + Sbjct: 397 QKVSELQELVPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTL 456 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGF 618 +ENA+H GL+ L+QLRGRVGR I+ L+Y P L++ S RL +K TE GF Sbjct: 457 FVENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEISEKRLDAIKGFTELGSGF 516 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669 IA DL R G ILG QSG + E++ LLE IA K K ++ Q Sbjct: 517 KIAMRDLSIRGAGNILGASQSGFIDSV--GFEMYSQLLEQAIATKQGKSLIRQ 567 >gi|291569965|dbj|BAI92237.1| transcriptional-repair coupling factor [Arthrospira platensis NIES-39] Length = 1167 Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 139/414 (33%), Positives = 226/414 (54%), Gaps = 21/414 (5%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 + LL + + ++ G + Q++ + P+ PT Q +D+ +DM M R+ Sbjct: 584 VDLLKLYAERSQKTGFSYPHDTPWQQEMEDSFPYKPTPDQLKCSQDVKRDMESDRPMDRL 643 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 + GDVG GKT VA+ A+ AV G Q +AP IL QQHY +K+ I + ++ Sbjct: 644 VCGDVGFGKTEVAIRAIFKAVTGGKQVAFLAPTTILTQQHYHTLKERFAPYPIEIGLLNR 703 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 + ++ +++ G+ II+GTH++ I++ L L++VDE+ RFGV Q+ K+ Sbjct: 704 FRSASEKKLIQQKLITGEIDIIVGTHSVLSKHIKFRDLGLLVVDEEQRFGVNQKEKIKAL 763 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 T VL +TATPIPRTL + G ++S IT P R+PIKT + P+N+ + + + Sbjct: 764 KTHVDVLTLTATPIPRTLYMALSGIREMSLITTPPPSRRPIKTHLGPLNQ-ETIRAAICQ 822 Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 L G + +++ P+IE E+K + R +V ++ +AI HG+M + ES+M Sbjct: 823 ELDRGGQVFYVVPRIEGIEEKSAAIREMVP---------SARLAIAHGQMEAGELESIML 873 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +F G +L+ TT+IE G+D+ + I++E+A FGL QL+QLRGRVGR + L Sbjct: 874 TFSAGEADILVCTTIIESGLDIPRVNTILVEDAHKFGLGQLYQLRGRVGRAGAQAHAWLF 933 Query: 596 Y------HPPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSG 640 Y L++++ RL +K G+ +A DL+ R G+ILG +QSG Sbjct: 934 YPIKGDGQAALTEDAVKRLRAIKEFTQLGSGYQLAMRDLEIRGAGDILGAQQSG 987 >gi|309379212|emb|CBX22169.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 1164 Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Sbjct: 607 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 666 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F ++ + + N +A + ALE +A G I+IG Sbjct: 667 QVAVLAPTTLLVEQHAQNFADRFADFPVKVAGLSRFNNSKA-TKAALEGMADGTVDIVIG 725 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G Sbjct: 726 THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 785 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ Sbjct: 786 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 839 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ ER +L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 840 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 897 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III A+ FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF Sbjct: 898 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 957 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K + PDL + G Sbjct: 958 TLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1013 Query: 679 QSIRILLY 686 + I L+ Sbjct: 1014 ITTEIKLH 1021 >gi|254302466|ref|ZP_04969824.1| transcription-repair coupling factor (TRCF) [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322658|gb|EDK87908.1| transcription-repair coupling factor (TRCF) [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 981 Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 141/375 (37%), Positives = 223/375 (59%), Gaps = 13/375 (3%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF+ T +Q AI+D+ +DM M R++ GDVG GKT VA+ AV Q +++ P Sbjct: 452 PFTETPAQLKAIEDVKRDMESGKVMDRLICGDVGFGKTEVAIRTTFKAVMDSKQVILLVP 511 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHYE + +N + +EI++ + + ++L+RI +G A ++IGTH L D Sbjct: 512 TTVLAEQHYERFSERFKNYPVHIEILSRVQSKKEQTESLKRIENGSADLVIGTHRLLSDD 571 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ + L+I+DE+ +FGV+ + KL + VL +TATPIPRTL L+ LG D+S I Sbjct: 572 IKFKDVGLLIIDEEQKFGVKAKEKLKKIKGDLDVLTLTATPIPRTLNLSLLGIRDLSVID 631 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P GR+ I+T I N+ I ++I L + EG + ++I + ++ ES + + E Sbjct: 632 TSPEGRQKIQTEYIDNNKNLIRDII--LSEISREG-QVFYIFNSV-KRMESKVKEIRE-- 685 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 L E+ ++ IHG+M D + + F+NG +L+ATT+IE GID+ +A+ +IIE Sbjct: 686 -LLPEYI--KVSYIHGQMLPRDIKKNIQEFENGNVDVLVATTIIENGIDIENANTMIIEG 742 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEEDL 625 E GL+Q++QLRGR+GR + S C +L + +KN+ R ++ ++ G +A ED Sbjct: 743 VEKLGLSQVYQLRGRIGRSTKKSYCYMLMNENKTKNAKKREESIREFDNLTGIDLAMEDS 802 Query: 626 KQRKEGEILGIKQSG 640 K R GEILG KQ G Sbjct: 803 KIRGVGEILGEKQHG 817 >gi|325130353|gb|EGC53119.1| transcription-repair coupling factor [Neisseria meningitidis OX99.30304] Length = 1292 Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 151/428 (35%), Positives = 235/428 (54%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Sbjct: 737 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 796 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F ++ + + N +A + ALE +A G I+IG Sbjct: 797 QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGLADGTVDIVIG 855 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G Sbjct: 856 THKLVQDDIRFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 915 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ Sbjct: 916 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 969 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ ER +L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 970 NMRERLKTLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 1027 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III A+ FGLAQLHQLRGRVGR + LL ++K++ RL+ + ++ GF Sbjct: 1028 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLNAIAAADELGAGF 1087 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K + PDL + G Sbjct: 1088 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1143 Query: 679 QSIRILLY 686 + I L+ Sbjct: 1144 ITTEIKLH 1151 >gi|54309559|ref|YP_130579.1| putative transcription-repair coupling factor [Photobacterium profundum SS9] gi|46913995|emb|CAG20777.1| putative transcription-repair coupling factor [Photobacterium profundum SS9] Length = 1151 Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 139/382 (36%), Positives = 210/382 (54%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI +L DM + M R++ GDVG GKT VA+ A A++ Q ++ Sbjct: 600 GFPFEETHDQALAINSVLSDMCKPRAMDRLVCGDVGFGKTEVAMRAAFVAIDNNKQVTVL 659 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + NT + VE+++ +++ + G+ I+IGTH L Sbjct: 660 VPTTLLAQQHFENFRDRFANTAVRVEVLSRFKTAKEQKQIMLDAEEGKIDILIGTHKLLN 719 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 S++Y+ L L++VDE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S Sbjct: 720 ASVKYHDLGLLVVDEEHRFGVRQKEKIKAIRADIDILTLTATPIPRTLNMAMSGMRDLSI 779 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503 I PA R IKT + D+ I R V+ + G + Y++ +++ EK + Sbjct: 780 IATPPARRLAIKTF---VREKDDAIIREAVLREIMRGGQVYFLHNEVDSIEKTTEELAKL 836 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + + I HG+M + D E VM F + LL+ TT+IE GID+ A+ I Sbjct: 837 IPE---------ARITFAHGQMRERDLEKVMGDFYHQRFNLLVCTTIIETGIDIPTANTI 887 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GF 618 I+ A++ GLAQLHQLRGRVGR + LL + ++K++ RL +++ ED GF Sbjct: 888 IMNRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHKKRMTKDAVKRLEAIESLEDLGAGF 947 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG +QSG Sbjct: 948 TLATHDLEIRGAGELLGDEQSG 969 >gi|23097518|ref|NP_690984.1| transcription-repair coupling factor [Oceanobacillus iheyensis HTE831] gi|22775741|dbj|BAC12019.1| transcription-repair coupling factor (TRCF) [Oceanobacillus iheyensis HTE831] Length = 1173 Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 144/431 (33%), Positives = 237/431 (54%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + L ++ K+ G + + ++ + + P+ T Q Sbjct: 572 EWTKVKRKVQSSVEDIADDLIKLYAEREAKQ--GYAFSPDSELQHEFEASFPYQETDDQL 629 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 I++I +DM ++ M R+L GDVG GKT VA+ A A+ G Q I+ P ILAQQHY Sbjct: 630 RCIQEIKEDMEKERPMDRLLCGDVGYGKTEVAIRAAFKAISDGKQVAILVPTTILAQQHY 689 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I++ Q+ I + +++ + + + + + G +++GTH + ++Y L L+ Sbjct: 690 ETIRERFQDYPINIGLLSRFRTKKQQTETTKGLKSGNVDVVVGTHRILSKDVEYKDLGLL 749 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + K+ Q T VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 750 IVDEEQRFGVKHKEKIKQLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPI 809 Query: 459 KTVIIPINRI--DEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T + N I E IER + G + +++ ++E +K + +V Sbjct: 810 QTYVTEYNPIFMREAIER---EMGRGGQVFFLYNRVESIDKIARDLGMLVPE-------- 858 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA+ HG+M++ + E+V+ SF G +L++TT+IE G+D+ + + +I+ +A++ GL+ Sbjct: 859 -AKIAVAHGQMNESELENVIFSFLEGEFDILVSTTIIETGVDIPNVNTLIVNHADYMGLS 917 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 QL+QLRGRVGR ++ Y L++ + RL +K TE GF IA DL R Sbjct: 918 QLYQLRGRVGRSNRVAYAYFTYQKDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLSIRG 977 Query: 630 EGEILGIKQSG 640 G +LG +Q G Sbjct: 978 TGNLLGSQQHG 988 >gi|282900454|ref|ZP_06308403.1| Transcription-repair coupling factor [Cylindrospermopsis raciborskii CS-505] gi|281194647|gb|EFA69595.1| Transcription-repair coupling factor [Cylindrospermopsis raciborskii CS-505] Length = 1171 Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 138/380 (36%), Positives = 212/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ PT Q A++D+ +DM M R++ GDVG GKT VA+ A+ AV AG Q ++ Sbjct: 626 SFPYQPTTDQLKAVQDVKRDMESPRPMDRLVCGDVGFGKTEVAIRAIFKAVTAGKQVALL 685 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 AP IL QQHY IK+ I V ++ +R +R+ G+ I++GTH L Sbjct: 686 APTTILTQQHYHTIKERFAPYPIHVGLLNRFRSHEEKRNIQKRLLTGELDIVVGTHQLLG 745 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +Q+ L L+++DE+ RFGV Q+ K+ T VL ++ATPIPRTL ++ G ++S Sbjct: 746 KGVQFKDLGLLVIDEEQRFGVNQKEKIKTLKTHLDVLTLSATPIPRTLYMSLSGIREMSL 805 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 IT P R+PI+T + P+N V ++ L G + +++ P++E +E+ R Sbjct: 806 ITTPPPTRRPIQTHLAPLNP-QIVSSAIRQELDRGGQVFYVVPRVEGIEETTTR------ 858 Query: 508 NSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 L E S I HG+M + ES M +F N +L+ TT+IE G+D+ + I+IE Sbjct: 859 --LREMIPSGRFVIAHGQMDESQLESTMLTFSNHEADILVCTTIIESGLDIPRVNTILIE 916 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLK---NTEDGFLI 620 +A FGL+QL+QLRGRVGR I + L++P LS + RL ++ G+ + Sbjct: 917 DAHRFGLSQLYQLRGRVGRA-GIQAHAWLFYPKQRELSDAARQRLRAIQEFTQLGSGYQL 975 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A D++ R G +LG +QSG Sbjct: 976 AMRDMEIRGVGNLLGAEQSG 995 >gi|284054183|ref|ZP_06384393.1| transcription-repair coupling factor [Arthrospira platensis str. Paraca] Length = 1152 Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 139/414 (33%), Positives = 226/414 (54%), Gaps = 21/414 (5%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 + LL + + ++ G + Q++ + P+ PT Q +D+ +DM M R+ Sbjct: 569 VDLLKLYAERSQKTGFSYPHDTPWQQEMEDSFPYKPTPDQLKCSQDVKRDMESDRPMDRL 628 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 + GDVG GKT VA+ A+ AV G Q +AP IL QQHY +K+ I + ++ Sbjct: 629 VCGDVGFGKTEVAIRAIFKAVTGGKQVAFLAPTTILTQQHYHTLKERFAPYPIEIGLLNR 688 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 + ++ +++ G+ II+GTH++ I++ L L++VDE+ RFGV Q+ K+ Sbjct: 689 FRSASEKKLIQQKLITGEIDIIVGTHSVLSKHIKFRDLGLLVVDEEQRFGVNQKEKIKAL 748 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 T VL +TATPIPRTL + G ++S IT P R+PIKT + P+N+ + + + Sbjct: 749 KTHVDVLTLTATPIPRTLYMALSGIREMSLITTPPPSRRPIKTHLGPLNQ-ETIRAAICQ 807 Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 L G + +++ P+IE E+K + R +V ++ +AI HG+M + ES+M Sbjct: 808 ELDRGGQVFYVVPRIEGIEEKSAAIREMVP---------SARLAIAHGQMEAGELESIML 858 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 +F G +L+ TT+IE G+D+ + I++E+A FGL QL+QLRGRVGR + L Sbjct: 859 TFSAGEADILVCTTIIESGLDIPRVNTILVEDAHKFGLGQLYQLRGRVGRAGAQAHAWLF 918 Query: 596 Y------HPPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSG 640 Y L++++ RL +K G+ +A DL+ R G+ILG +QSG Sbjct: 919 YPIKGDGQAALTEDAVKRLRAIKEFTQLGSGYQLAMRDLEIRGAGDILGAQQSG 972 >gi|15644199|ref|NP_229249.1| transcription-repair coupling factor, putative [Thermotoga maritima MSB8] gi|4982014|gb|AAD36518.1|AE001796_10 transcription-repair coupling factor, putative [Thermotoga maritima MSB8] Length = 893 Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 134/409 (32%), Positives = 237/409 (57%), Gaps = 17/409 (4%) Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 ++ L M++Q + + +P + E + +K + P+ T Q+ +I+++L D++ + M R Sbjct: 338 ELVELYMKRQEAQGLSLPGDPE--LEEKFAESFPYIETPDQQQSIEEVLSDLASEKPMDR 395 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 +L GD G GKT VAL A AV +G Q ++ P +LA+QHYE K+ + + VE++ Sbjct: 396 LLCGDAGVGKTEVALRAAFRAVASGKQVAVLVPTTVLARQHYENFKERMEPFGVKVELLD 455 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 + +++ +E++ G+ IIIGTH+L + I++ L LVI+DE+ +FGV+Q+ + + Sbjct: 456 SSRTAREKKEIIEKLKKGEIDIIIGTHSLLNERIEFSDLGLVIIDEEQKFGVEQKERFKK 515 Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 + +VL ++ATPIPRTL + G D S I P GRKP+ + + D++++ Sbjct: 516 LRLSVNVLTLSATPIPRTLHMALSGMKDFSVINSPPPGRKPVYVYVAEYS--DDLVKGAV 573 Query: 477 V-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 + ++ G + ++ ++EE + E F L F IA+ HG+MS E ++ Sbjct: 574 IREINRGGQVIYVHNRVEE--------LPEVFEKLKRMFPELEIAVAHGKMSRKTMERIV 625 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F G +L+ TT+IE G+D+ +A+ +I+++A+ +GL+QL+QLRGRVGR + + Sbjct: 626 HEFYRGNIDVLLCTTIIENGVDIPNANTLIVDDAQRYGLSQLYQLRGRVGRSDRRAFAYF 685 Query: 595 LYHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640 LY +++ RL VLK+ G IA +D++ R G++LG++Q G Sbjct: 686 LYPKGTPRSALERLKVLKSYTGFGSGLQIALKDMELRGVGDVLGLEQHG 734 >gi|256848382|ref|ZP_05553825.1| transcription-repair coupling factor [Lactobacillus coleohominis 101-4-CHN] gi|256714980|gb|EEU29958.1| transcription-repair coupling factor [Lactobacillus coleohominis 101-4-CHN] Length = 1179 Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 143/431 (33%), Positives = 233/431 (54%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R E +AG + L +++ K P + + +K P+S TK Q Sbjct: 569 EWAKTKRRVAQKVENIAGDLVDLYAQRKTAKGFAYP--KDDYLQEKFDHEFPYSETKDQL 626 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I ++ DM + M R+L GDVG GKT VAL A+ AV G Q + P ILAQQHY Sbjct: 627 RSINEVKADMEKPKPMDRLLVGDVGYGKTEVALRAIFKAVTGGKQVAFLVPTTILAQQHY 686 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALER-IAHGQAHIIIGTHALFQDSIQYYKLIL 397 + +++ + + +E+++ + K +E+ +A G +++GTH L + + L L Sbjct: 687 DTMRERFEGFPVKIEMMS-RFRTPKQMKTIEKGLADGSIDVVVGTHRLLSKDVHFKDLGL 745 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +I+DE+ RFGV+ + KL Q + VL +TATPIPRTL ++ LG D+S + P GR P Sbjct: 746 LIIDEEQRFGVKHKEKLKQLKSNVDVLTLTATPIPRTLHMSMLGVRDLSVLETPPVGRFP 805 Query: 458 IKTVIIPINRI---DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 I+T ++ N D ++ +K G + Y++ ++ ++ VV +L Sbjct: 806 IQTYVLEQNWSAIRDGILREMK----RGGQVYYLHNRV-----NDIERVVNEIETLVPE- 855 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + +A IHG+MS+ E V+ F G +L+ T++IE G+D+ + + + +ENA+ GLA Sbjct: 856 -ARVADIHGQMSEAQLEGVLYDFIRGEYDVLVTTSIIETGVDIPNVNTLFVENADRMGLA 914 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 QL+Q+RGR+GR ++ +Y P L++ RL+ +++ TE GF IA DL R Sbjct: 915 QLYQIRGRIGRSNRVAYAYFMYQPNKVLTEPGEKRLAAIRDFTELGSGFKIAMRDLAIRG 974 Query: 630 EGEILGIKQSG 640 G +LG +Q G Sbjct: 975 AGNLLGKQQHG 985 >gi|238922870|ref|YP_002936383.1| transcription-repair coupling factor [Eubacterium rectale ATCC 33656] gi|238874542|gb|ACR74249.1| transcription-repair coupling factor [Eubacterium rectale ATCC 33656] Length = 1177 Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 150/456 (32%), Positives = 246/456 (53%), Gaps = 23/456 (5%) Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EWT + R R A ++ + L R+Q + G + ++ PF T+ Q Sbjct: 575 EWTRTKNRVRGAVKQIAGDLVKLYAQREQ---QNGYAFGEDTVWQREFEELFPFDETEDQ 631 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 AI+ DM M R++ GDVG GKT VA+ A AV+ Q +AP ILAQQ Sbjct: 632 ILAIEATKTDMQSHKIMDRLICGDVGYGKTEVAIRAAFKAVQDSKQVAYLAPTTILAQQI 691 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y+ + ++ + V+++ A ++K +E++ G+ IIIGTH + +Q+ L L Sbjct: 692 YDTFSQRMKDFPVNVDLMCRFRSAAEQKKTIEKLKKGEVDIIIGTHRILSKDVQFKDLGL 751 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +++DE+ RFGV + K+ Q VL +TATPIPRTL ++ +G D+S + E P R P Sbjct: 752 LVIDEEQRFGVTHKEKIKQMKVNVDVLTLTATPIPRTLHMSLIGIRDMSVLEEPPMDRVP 811 Query: 458 IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-T 515 I+T ++ N DE++ E + L+ + Y++ ++ R + + L E Sbjct: 812 IQTYVMEYN--DELVREAINRELARNGQVYYVYNKV--------RDIADITAKLQELVPD 861 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 +++A HG+M + + E +M F NG +L++TT+IE G+D+ + + +II +A++ GL+Q Sbjct: 862 ATVAFAHGQMKETELERIMYRFINGEIDVLVSTTIIETGLDISNVNTMIIHDADNMGLSQ 921 Query: 576 LHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630 L+QLRGRVGR + L+Y + L + + RL+ +K D GF IA DL+ R Sbjct: 922 LYQLRGRVGRSNRTAYAFLMYRRNKMLKEVAEKRLAAIKEYSDLGSGFKIAMRDLEIRGA 981 Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666 G +LG +QSG + + +L+ +L A K+AK I Sbjct: 982 GNLLGAEQSGHMEAV--GYDLYCKMLSEAVKEAKGI 1015 >gi|167627778|ref|YP_001678278.1| transcription-repair coupling factor [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597779|gb|ABZ87777.1| transcription-repair coupling factor [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 1139 Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 139/382 (36%), Positives = 209/382 (54%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q AI D+ +DM M R++ GDVG GKT +A+ A A + Q I+ Sbjct: 592 DFPYEETPDQLLAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQVAIL 651 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHY K NT + +E+IT + + + + + G IIIGTH L Sbjct: 652 VPTTILAQQHYNSFKDRFANTAVNIEVITRSKTAKAQEELFDNLKKGTVDIIIGTHKLIS 711 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I + L L+I+DE+HRFGV Q+ KL +L M+ATPIPR+L + D+S Sbjct: 712 SKIDFNNLGLLIIDEEHRFGVAQKEKLKALKAEIDILTMSATPIPRSLSMAFSALRDLSI 771 Query: 448 ITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSV 503 I PA R +KT + N I E + R + G + +++ +++ +KK+ + + Sbjct: 772 IASPPAKRLSVKTFVKEYDNNIIREAVSRETI---RGGQIFYLYNKVDTIQKKKEILQEL 828 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 R IAI HG+MS+ + + +M FK+ +L+ TT+IE GID+ +A+ + Sbjct: 829 FPRL---------RIAIAHGQMSEKEIQKIMFDFKHNKYHILLCTTIIETGIDIPNANTL 879 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GF 618 IIE+A + GLAQLHQLRGRVGR + +L ++K++ RL + +T+ GF Sbjct: 880 IIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLVPSEGSITKDATKRLEAIGSTDSLGGGF 939 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GEILG +QSG Sbjct: 940 TLANHDLEIRGAGEILGQEQSG 961 >gi|330686080|gb|EGG97702.1| transcription-repair coupling factor [Staphylococcus epidermidis VCU121] Length = 1169 Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 155/446 (34%), Positives = 237/446 (53%), Gaps = 23/446 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + KQ + +G + + + P+ T Q +I +I DM ++ M R+L Sbjct: 587 LIDLYKQREMSVGYQFGPDTEEQSTFELDFPYELTPDQSKSIDEIKGDMERERPMDRLLC 646 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV G Q + P ILAQQHYE + + Q+ + +++I+ Sbjct: 647 GDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPVEIQLISRFR 706 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 ++ E + G I++GTH L I Y L L+IVDE+ RFGV+ + ++ Sbjct: 707 STKEVKETKEGLKSGYVDIVVGTHKLLGKDIHYKDLGLLIVDEEQRFGVRHKERIKTLKN 766 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP--INRIDEVIERLKV 477 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N I E +ER Sbjct: 767 NVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALER--- 823 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDS 536 LS + +++ +++ S+ E+ L ++IA+ HG+M++ D E M S Sbjct: 824 ELSRDGQVFYLYNKVQ--------SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLS 875 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F N +L+ TT+IE G+DV +A+ +IIE A+ FGL+QL+QLRGRVGR I L Sbjct: 876 FINHEYDILVTTTIIETGVDVPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFL- 934 Query: 597 HPP---LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 HP L++ + RL +K TE GF IA DL R G +LG +Q G + + Sbjct: 935 HPANKVLNETAEERLQAIKEFTELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSV--GFD 992 Query: 651 LHDSLLEIARKDAKHILTQDPDLTSV 676 L+ +LE A + + I + PD+ V Sbjct: 993 LYSQMLEEAVNEKRGIKEEAPDVPDV 1018 >gi|315640551|ref|ZP_07895659.1| transcription-repair coupling factor [Enterococcus italicus DSM 15952] gi|315483755|gb|EFU74243.1| transcription-repair coupling factor [Enterococcus italicus DSM 15952] Length = 1179 Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 143/431 (33%), Positives = 235/431 (54%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ E +A + L +++ +K G + ++ P+S T+ Q Sbjct: 568 EWTKTKRKVSGKIEDIADDLIQLYAQREAEK--GFAFGPDDGYQKEFEDAFPYSETEDQL 625 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I +DM ++ M R+L GDVG GKT VAL A A+ Q I+ P ILAQQHY Sbjct: 626 RSTSEIKKDMEKEKPMDRLLVGDVGFGKTEVALRAAFKAIRESKQVAILVPTTILAQQHY 685 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + Q + + I++ ++ +++ +E++ GQ I++GTH L I + L L+ Sbjct: 686 ETMVDRFQGFPVNIGILSRFRTKSQQQETIEQLRRGQIDIVVGTHRLLSKDITFADLGLL 745 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 ++DE+ RFGV+ + +L + + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 746 VIDEEQRFGVKHKERLKELRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 805 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E I R ++ G + +++ +++ E+K + +V Sbjct: 806 QTYVMESNPGAIREAILR---EMARGGQVFYLYNRVDTIERKVEELQMLVP--------- 853 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + I HG+M++I E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 854 DARIGYAHGQMTEIQLENTLFDFIEGEYDILVTTTIIETGVDIPNANTLFVENADYMGLS 913 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y P L++ S RL +K+ TE GF IA DL R Sbjct: 914 TLYQLRGRVGRSNRVAYAYFMYEPQKILTEVSEKRLQAIKDFTELGSGFKIAMRDLSIRG 973 Query: 630 EGEILGIKQSG 640 G +LG +Q G Sbjct: 974 AGNLLGAQQHG 984 >gi|254468808|ref|ZP_05082214.1| transcription-repair coupling factor [beta proteobacterium KB13] gi|207087618|gb|EDZ64901.1| transcription-repair coupling factor [beta proteobacterium KB13] Length = 1120 Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 150/430 (34%), Positives = 233/430 (54%), Gaps = 21/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W R+ L A ++ L ++ KK G+ ++ QK PF T Q Sbjct: 526 QWEKEKRKALKQVYDTAAELLNLYALREKKK--GLVSKIDFLEYQKFANEFPFEETPDQM 583 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 AI+ +++DM M R++ GDVG GKT VA+ A ++ Q +I+ P +LA QHY Sbjct: 584 LAIESVIKDMESARPMDRLICGDVGFGKTEVAMRAAFISIMNNRQVIILVPTTLLASQHY 643 Query: 339 E-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 F+ +++ + + +E I+ + + LE++A+G+ I+IGTH L Q I+ + L Sbjct: 644 NNFVDRFS-SFPVEIEEISRFKSNKQQNEVLEKLANGKVDIVIGTHRLLQKDIKIDNIGL 702 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +IVDE+HRFGV+Q+ L + T L +TATPIPRTL ++ G D S I+ P R Sbjct: 703 IIVDEEHRFGVRQKEMLKKFKTNTDFLALTATPIPRTLSMSLEGLRDFSIISTPPQKRLS 762 Query: 458 IKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 IKT++ + I E + R + G +AY++ + S+ ++ E+ + Sbjct: 763 IKTMVKSFSEGIIKEALTR---EFNRGGQAYFLHNDV-----SSIYAISEKLTKIMP--D 812 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +AI HG+M + + E VM F LL+ TT+IE GID+ ++ III NA+ FGL+Q Sbjct: 813 AKVAIAHGQMKEKELERVMQDFHQQRFNLLLCTTIIETGIDIPTSNTIIINNADRFGLSQ 872 Query: 576 LHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630 LHQLRGRVGR + LL + L+ + RL ++ ED G+ +A DL+ R Sbjct: 873 LHQLRGRVGRSHHQAFAYLLIDENRSLTSKAKKRLEAIQYLEDLGSGYFLAMHDLEIRGA 932 Query: 631 GEILGIKQSG 640 GEILG +QSG Sbjct: 933 GEILGDQQSG 942 >gi|50084573|ref|YP_046083.1| transcription-repair coupling protein [Acinetobacter sp. ADP1] gi|49530549|emb|CAG68261.1| transcription-repair coupling protein [Acinetobacter sp. ADP1] Length = 1171 Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 146/429 (34%), Positives = 230/429 (53%), Gaps = 21/429 (4%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W+ R+ L +A ++ + R+Q K G ++ + + T Q + Sbjct: 571 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFAFELDQSPYMQFSSGFAYEETLDQAN 628 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI+ L DM M R++ GDVG GKT VA+ A AV+ Q ++ P +LAQQHYE Sbjct: 629 AIEATLHDMQLAKPMDRLVCGDVGFGKTEVAMRAAFLAVQNNKQVAVLVPTTLLAQQHYE 688 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 K + I +E+++ +K +E + G+ I++GTH L Q+++Q++ L L+I Sbjct: 689 SFKDRFADWPIRIEVLSRFGSNKTHQKNIEDLQTGKVDIVVGTHKLLQETVQFHDLGLMI 748 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 VDE+HRFGV+ + ++ +L +TATPIPRTL + G D+S I PA R +K Sbjct: 749 VDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 808 Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSS 517 T + + D V E + L G + Y++ +++ E+ N R++V + Sbjct: 809 T-FVQEHTDDSVREAILRELLRGGQVYFLHNEVDSIERTAENIRNLVPE---------AR 858 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 +A+ HG+M + + E VM F + +L+ +T+IE GIDV +A+ II+E A+ GLAQLH Sbjct: 859 VAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTIIMERADKLGLAQLH 918 Query: 578 QLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 QLRGRVGR + LL P L ++ RL ++ GF++A EDL+ R G Sbjct: 919 QLRGRVGRSHHQAYAYLLV-PSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAG 977 Query: 632 EILGIKQSG 640 E+LG +QSG Sbjct: 978 ELLGEQQSG 986 >gi|325134475|gb|EGC57120.1| transcription-repair coupling factor [Neisseria meningitidis M13399] Length = 1305 Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Sbjct: 750 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 809 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F ++ + + N +A + ALE +A G I+IG Sbjct: 810 QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 868 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G Sbjct: 869 THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 928 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ Sbjct: 929 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 982 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ ER +L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 983 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 1040 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III A+ FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF Sbjct: 1041 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1100 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K + PDL + G Sbjct: 1101 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1156 Query: 679 QSIRILLY 686 + I L+ Sbjct: 1157 ITTEIKLH 1164 >gi|325144576|gb|EGC66875.1| transcription-repair coupling factor [Neisseria meningitidis M01-240013] gi|325205943|gb|ADZ01396.1| transcription-repair coupling factor [Neisseria meningitidis M04-240196] Length = 1296 Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Sbjct: 741 QAFADGFGYEETEDQAAAIAAVIKDLTQTKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 800 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F ++ + + N +A + ALE +A G I+IG Sbjct: 801 QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 859 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G Sbjct: 860 THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 919 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ Sbjct: 920 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 973 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ ER +L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 974 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 1031 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III A+ FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF Sbjct: 1032 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1091 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K + PDL + G Sbjct: 1092 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1147 Query: 679 QSIRILLY 686 + I L+ Sbjct: 1148 ITTEIKLH 1155 >gi|86608683|ref|YP_477445.1| transcription-repair coupling factor [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557225|gb|ABD02182.1| transcription-repair coupling factor [Synechococcus sp. JA-2-3B'a(2-13)] Length = 1158 Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 140/386 (36%), Positives = 215/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q++ + P+ T Q A+++I +DM M R+L GDVG GKT VA+ A+ AV AG Sbjct: 597 QELEDSFPYPLTPDQLRAVQEIKRDMESPRPMDRLLCGDVGFGKTEVAIRAIFKAVTAGK 656 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++AP IL QQHY +K+ I V ++ +++ L R+ G+ +++GT Sbjct: 657 QVALLAPTTILTQQHYHTLKERFAPYPIQVGLLNRFRTSEEKKEILSRLKSGELDVVVGT 716 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +Q+ L L+++DE+ RFGV Q+ K+ T VL +TATPIPRTL + G Sbjct: 717 HQLLGKDVQFRDLGLLVIDEEQRFGVNQKEKIKLLKTQVDVLTLTATPIPRTLYMALSGL 776 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIE--EKKESN 499 ++S I P R+PIKT + P N EVI ++ L G + +++ +IE E+ + Sbjct: 777 REMSLIQTPPPSRRPIKTYLSPYN--PEVIRTAIRQELDRGGQVFYVVNRIEGIEEASAK 834 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 R V + IAI HG+M + + E+ M +F NG +L+ TT+IE G+D+ Sbjct: 835 LREWVP---------GARIAIAHGQMPEGELEATMLAFNNGEIDILVCTTIIESGLDIPR 885 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NT 614 + I+IENA+ FGLAQL+QLRGRVGR + L Y L++ + RL ++ Sbjct: 886 VNTILIENAQEFGLAQLYQLRGRVGRAGIQAHAWLFYREDGILTEEARKRLQAIQEFTQL 945 Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSG 640 G+ +A D++ R G +LG +QSG Sbjct: 946 GSGYQLAMRDMEIRGIGNLLGTEQSG 971 >gi|262278954|ref|ZP_06056739.1| transcription-repair coupling factor [Acinetobacter calcoaceticus RUH2202] gi|262259305|gb|EEY78038.1| transcription-repair coupling factor [Acinetobacter calcoaceticus RUH2202] Length = 1153 Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 146/430 (33%), Positives = 228/430 (53%), Gaps = 23/430 (5%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W+ R+ L +A ++ + R+Q K G ++ + + + T Q + Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFGFELDQSLYMQFASGFAYEETLDQAN 612 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI+ L DM Q M R++ GDVG GKT VA+ A AV+ G Q ++ P +LAQQHYE Sbjct: 613 AIEATLHDMQQARPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 K + + +E+++ K +E + G+ I++GTH L Q+++Q+ L L++ Sbjct: 673 SFKDRFADWPVRIEVLSRFGSNKAHTKNIEDLIAGKVDIVVGTHKLLQENVQFKDLGLMV 732 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 VDE+HRFGV+ + ++ +L +TATPIPRTL + G D+S I PA R +K Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792 Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515 T + I E I R L G + Y++ +++ E+ N R +V Sbjct: 793 TFVQEHTEASIKEAILR---ELLRGGQVYFLHNEVDTIERAAENIRVLVPE--------- 840 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A+ HG+M + + E VM F + +L+ +T+IE GIDV +A+ I+IE A+ GLAQ Sbjct: 841 ARVAVAHGQMRERELEQVMQQFYHKEFNVLVCSTIIETGIDVPNANTILIERADKLGLAQ 900 Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630 LHQLRGRVGR + LL L ++ RL ++ GF++A EDL+ R Sbjct: 901 LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA 960 Query: 631 GEILGIKQSG 640 GE+LG +QSG Sbjct: 961 GELLGEQQSG 970 >gi|145346965|ref|XP_001417951.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144578179|gb|ABO96244.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 754 Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 152/448 (33%), Positives = 239/448 (53%), Gaps = 19/448 (4%) Query: 233 LLAGQIALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 L+ Q+ + L R Q +E +P + + A++ + PF+ T Q SAI++I +D+ Q Sbjct: 163 LVVNQMVVYLQRLQCVREPYPLP---DPERAKQFDASFPFTLTPDQTSAIQEITEDLQQD 219 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351 M R++ GDVG GKT VA+ AM +GG +MAP +LA+QH + + I Sbjct: 220 APMDRLVIGDVGFGKTEVAMRAMFHVASSGGGVFMMAPTTVLAKQHAANLAVRFRPLGIN 279 Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK-LILVIVDEQHRFGVQQ 410 VE++T ++ A + + G+ II+GTH L +YYK L L+++DE+ RFGV+ Sbjct: 280 VELVTRHIQAAKQNTIFDDFRDGKVQIIVGTHKLVNLEQEYYKQLRLLVIDEEQRFGVKH 339 Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470 + +++ VL ++ATPIPRTL + G D S + P R+PI TV+ P N D+ Sbjct: 340 KDQISALKAEVDVLTLSATPIPRTLHMAMSGFRDASLVQTPPPERRPINTVLAPQND-DD 398 Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530 + + ++ +S + Y+I P+I + R +R L + I HG+M Sbjct: 399 IRKAIEYEISRNGQIYYIVPRI-----NMMRDACDRLLRLFPNL--QIMTAHGQMDGEAI 451 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 + M+SF NG+ +LIATT++E G+D+ + + IIIEN + FGLA L+QLRGRVGR + Sbjct: 452 DDAMESFSNGSADVLIATTIVESGLDIPNCNTIIIENVQFFGLASLYQLRGRVGRAGRQA 511 Query: 591 SCILLY---HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644 + Y L+ + RL+ L+ +GF ++E D+ R G + G KQSG Sbjct: 512 YAYMFYSADESELTTGAQERLAALEECCGLGEGFRLSERDMGIRGVGTMFGEKQSGDVDS 571 Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPD 672 + A L ++ R D I T D D Sbjct: 572 VGADLYLELLYKQLQRIDNLRIKTIDAD 599 >gi|323142048|ref|ZP_08076896.1| transcription-repair coupling factor [Phascolarctobacterium sp. YIT 12067] gi|322413435|gb|EFY04306.1| transcription-repair coupling factor [Phascolarctobacterium sp. YIT 12067] Length = 1090 Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 141/381 (37%), Positives = 209/381 (54%), Gaps = 21/381 (5%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 P+ T Q AI +I DM + M R+L GDVG GKT VAL A AV G Q ++A Sbjct: 545 FPYEETPDQLKAIAEIKADMEKPQPMERLLCGDVGYGKTEVALRAAFKAVLDGKQVAVLA 604 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQHY K+ +N + V ++ +R L+ +A G+ I+IGTH L Q Sbjct: 605 PTTVLAQQHYITFKERVRNFGVEVRLLNRFCTPKEQRTVLQEVADGKVDILIGTHRLLQP 664 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 + + L L+I+DE+ RFGV Q+ K+ + VL ++ATPIPRTL + + D+S I Sbjct: 665 DVNFTSLGLLIIDEEQRFGVAQKEKIKKWHLGIDVLSLSATPIPRTLHMALVNGRDMSVI 724 Query: 449 TEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504 P R P++T + N I E +ER L G + Y+I ++ E + R +V Sbjct: 725 ESPPEDRLPVETYVSEYNDGMIKEALER---ELRRGGRIYYISNRVSALEPLAAKLRRLV 781 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 SI I HG+M++ E M +F G C +L+ TT++E G+DV A+ II Sbjct: 782 PGI---------SIKIAHGQMNEDALEDAMITFYEGGCDVLLCTTIVENGLDVPLANTII 832 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFL 619 I+ A++FGL+QL+Q+RGRVGR ++ +Y P LS+ + RL +++ + GF Sbjct: 833 IDGADNFGLSQLYQMRGRVGRSSRLAYAYFVYQPNKALSEIAEKRLQAIRDFTELGAGFK 892 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 IA DL+ R G +LG +Q G Sbjct: 893 IAMRDLEIRGAGNLLGPQQHG 913 >gi|261400667|ref|ZP_05986792.1| transcription-repair coupling factor [Neisseria lactamica ATCC 23970] gi|269209577|gb|EEZ76032.1| transcription-repair coupling factor [Neisseria lactamica ATCC 23970] Length = 1164 Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Sbjct: 607 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 666 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F ++ + + N +A + ALE +A G I+IG Sbjct: 667 QVAVLAPTTLLVEQHAQNFADRFADFPVKVAGLSRFNNNKA-TKAALEGMADGTVDIVIG 725 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G Sbjct: 726 THKLVQDDIRFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 785 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ Sbjct: 786 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 839 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ ER +L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 840 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 897 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III A+ FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF Sbjct: 898 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 957 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K + PDL + G Sbjct: 958 TLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1013 Query: 679 QSIRILLY 686 + I L+ Sbjct: 1014 ITTEIKLH 1021 >gi|16799323|ref|NP_469591.1| transcription-repair coupling factor [Listeria innocua Clip11262] gi|16412675|emb|CAC95479.1| transcription-repair coupling factor [Listeria innocua Clip11262] Length = 1179 Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 144/430 (33%), Positives = 233/430 (54%), Gaps = 21/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW ++ A + +A + L ++ +K G + + ++ ++ P+ T Q Sbjct: 573 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSADDEMQREFEEAFPYQETDDQL 630 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I +I +DM + M R+L GDVG GKT VAL A A+ G Q + P ILAQQHY Sbjct: 631 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHY 690 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E +K+ Q I + +++ + + + L+ + +G I++GTH L ++Y L L+ Sbjct: 691 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDIVVGTHRLLSKDVEYQDLGLL 750 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 +VDE+ RFGV + K+ Q + VL +TATPIPRTL ++ LG D+S I PA R P+ Sbjct: 751 VVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T + N + E IER L+ + Y++ ++E S+ ++ + + Sbjct: 811 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------SITQKADEISAMVPD 859 Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A HG+M + + ESV+ SF G +L+ TT+IE G+D+ + + + +++A+ GL+Q Sbjct: 860 ARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 919 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGRVGR I+ +Y L + + RLS +K TE GF IA DL R Sbjct: 920 LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 979 Query: 631 GEILGIKQSG 640 G ILG +Q G Sbjct: 980 GNILGAQQHG 989 >gi|331086145|ref|ZP_08335227.1| hypothetical protein HMPREF0987_01530 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406304|gb|EGG85818.1| hypothetical protein HMPREF0987_01530 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 1113 Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 144/409 (35%), Positives = 232/409 (56%), Gaps = 17/409 (4%) Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T Q +AI+ +DM K M R++ GDVG GKT VA+ A AV+ Q V + P +L Sbjct: 566 TDDQLNAIEATKKDMESKKIMDRLICGDVGYGKTEVAVRAAFKAVQESKQVVYLVPTTVL 625 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 AQQHY + ++ + V+++ A +RK ++ + G I+IGTH + D +++ Sbjct: 626 AQQHYNTFVQRMKDFPVRVDLLCRFRTPAQQRKTIDDVRKGLVDIVIGTHRVLSDDLKFK 685 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L L+I+DE+ RFGVQ + K+ Q VL +TATPIPRTL ++ +G D+S + E P Sbjct: 686 DLGLLIIDEEQRFGVQHKEKIKQMKENVDVLTLTATPIPRTLHMSLIGIRDMSVLEEPPM 745 Query: 454 GRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512 R PI+T ++ N DE++ E ++ L+ + Y++ ++++ E V +R L Sbjct: 746 DRMPIQTYVMEYN--DEMVREAIERELARDGQVYYVYNRVQDIDE-----VADRIQKLVP 798 Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 +++A HG+M + E +M F NG +LI+TT+IE G+D+ +A+ +II +A+ G Sbjct: 799 E--ANVAFAHGQMREHQLERIMYDFINGEIDVLISTTIIETGLDISNANTMIIHDADRLG 856 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627 L+QL+QLRGRVGR ++ LLY L + + RLS ++ D GF IA DL+ Sbjct: 857 LSQLYQLRGRVGRSNRMAYAFLLYKRDKLLKEVAEKRLSAIREFTDLGSGFKIAMRDLEI 916 Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676 R G +LG +Q G + + +L+ +L A K K + ++P T+V Sbjct: 917 RGAGNLLGAEQHGHMEAV--GYDLYCKMLNEAVKHLKGEVEEEPYTTTV 963 >gi|325140492|gb|EGC63013.1| transcription-repair coupling factor [Neisseria meningitidis CU385] Length = 1305 Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Sbjct: 750 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 809 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F ++ + + N +A + ALE +A G I+IG Sbjct: 810 QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 868 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G Sbjct: 869 THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 928 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ Sbjct: 929 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 982 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ ER +L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 983 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 1040 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III A+ FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF Sbjct: 1041 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1100 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K + PDL + G Sbjct: 1101 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1156 Query: 679 QSIRILLY 686 + I L+ Sbjct: 1157 ITTEIKLH 1164 >gi|297620477|ref|YP_003708614.1| putative transcription-repair-coupling factor [Waddlia chondrophila WSU 86-1044] gi|297375778|gb|ADI37608.1| putative transcription-repair-coupling factor [Waddlia chondrophila WSU 86-1044] Length = 1092 Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 143/386 (37%), Positives = 217/386 (56%), Gaps = 18/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q PFS T+ Q +A+ I +DM+ + M R++ GDVG GKT VA+ A AV GG Sbjct: 564 QAFEEEFPFSETEDQLNAVACIKKDMTSPSAMDRLVCGDVGYGKTEVAMRAAFKAVMDGG 623 Query: 323 QAVIM-APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 + V M P +LA QHYE + +N I + +++ R+ LE +A+G I+IG Sbjct: 624 KQVAMLVPTTVLAMQHYENFIERMRNFPINISVLSRFRSTKQTRQTLEGVANGTVDIVIG 683 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L + + ++ L L+I+DE+ RFGV+ + L + T L ++ATPIPRTL ++ +G Sbjct: 684 THRLISEDVSFHNLGLIIIDEEQRFGVRAKEHLKKAKTGVDCLTLSATPIPRTLYMSLIG 743 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESN 499 D+S I P R+PIKTVI + DE+++ L+ +G +AY I ++E Sbjct: 744 ARDMSVINTPPQDRQPIKTVISEPS--DELLKNALLREFARDG-QAYLIHNRVE-----T 795 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 ++ R L + I I+HG+M + ++V FKNG +LIATT++E GID+ + Sbjct: 796 LPNMYRRVKKLLPQ--ARIDIVHGQMKPAEIDTVFHHFKNGEIDILIATTIVESGIDIPN 853 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL---YH--PPLSKNSYTRLSVLKNT 614 A+ I+I+ A+ FGLA L+QLRGRVGR + L +H P +S+ L+ Sbjct: 854 ANTILIDRADRFGLADLYQLRGRVGRWNRRAFAYFLIPKFHSLPEISRKRLGALAESSGY 913 Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSG 640 G +A DL+ R G+ILG +QSG Sbjct: 914 GGGMKLAMRDLEIRGAGDILGTEQSG 939 >gi|299770361|ref|YP_003732387.1| transcription-repair coupling factor [Acinetobacter sp. DR1] gi|298700449|gb|ADI91014.1| transcription-repair coupling factor [Acinetobacter sp. DR1] Length = 1153 Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 144/428 (33%), Positives = 227/428 (53%), Gaps = 19/428 (4%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W+ R+ L +A ++ + R+Q K G ++ + + + T Q + Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFGFELDQSLYMQFASGFAYEETLDQAN 612 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI+ L DM Q M R++ GDVG GKT VA+ A AV+ G Q ++ P +LAQQHYE Sbjct: 613 AIEATLHDMQQARPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 K + + +E+++ K +E + G+ I++GTH L Q+++Q+ L L++ Sbjct: 673 SFKDRFADWPVRIEVLSRFGSSKTHTKNIEDLIAGKVDIVVGTHKLLQENVQFKDLGLMV 732 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 VDE+HRFGV+ + ++ +L +TATPIPRTL + G D+S I PA R +K Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792 Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSS 517 T + V E + L G + Y++ +++ E+ N R +V + Sbjct: 793 TFVQEHTEA-SVKEAILRELLRGGQVYFLHNEVDTIERAAENIRVLVPE---------AR 842 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 +A+ HG+M + + E VM F + +L+ +T+IE GIDV +A+ I+IE A+ GLAQLH Sbjct: 843 VAVAHGQMRERELEQVMQQFYHKEFNVLVCSTIIETGIDVPNANTILIERADKLGLAQLH 902 Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632 QLRGRVGR + LL L ++ RL ++ GF++A EDL+ R GE Sbjct: 903 QLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGE 962 Query: 633 ILGIKQSG 640 +LG +QSG Sbjct: 963 LLGEQQSG 970 >gi|258446110|ref|ZP_05694271.1| transcription-repair coupling factor [Staphylococcus aureus A6300] gi|257855087|gb|EEV78029.1| transcription-repair coupling factor [Staphylococcus aureus A6300] Length = 1168 Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 144/382 (37%), Positives = 213/382 (55%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ ++ E + G I++GTH L Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTSKEIKQTKEGLKTGFVDIVVGTHKLLS 733 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE+A+ FGL+QL+QLRGRVGR I L HP L++N+ RL +K TE GF Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTENAEDRLQAIKEFTELGSGF 961 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 IA DL R G +LG +Q G Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983 >gi|237785157|ref|YP_002905862.1| transcription-repair coupling factor [Corynebacterium kroppenstedtii DSM 44385] gi|237758069|gb|ACR17319.1| transcription-repair coupling factor [Corynebacterium kroppenstedtii DSM 44385] Length = 1281 Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 142/430 (33%), Positives = 231/430 (53%), Gaps = 21/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W + ++ A +A + L ++Q G + + +++ N PF+ T+ Q Sbjct: 644 DWKNTKKKARAAVRDIAADLVQLYAKRQAAP--GYAFSPDTPWQREMEDNFPFTETEDQY 701 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI+ + +DM + M R++ GDVG GKT VA+ A AV+ G Q V++ P +LAQQH+ Sbjct: 702 NAIEAVKEDMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVVLLVPTTLLAQQHF 761 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + I + ++ R+ L +A GQ I+IGTH L Q +Q+ L LV Sbjct: 762 ATFSERMEGFPITIRQLSRFTTPKQAREVLTGLAEGQVDIVIGTHRLLQTGVQWKNLGLV 821 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 IVDE+ RFGV+ + + KA HV L M+ATPIPRTL ++ G D+S I P R Sbjct: 822 IVDEEQRFGVEHKEHI--KALRSHVDMLTMSATPIPRTLEMSMAGIRDMSTILTPPEDRH 879 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 P+ T + + ++ ++ L + +++ + RS+ + + E Sbjct: 880 PVLT-YVGVQEDKQIAAAIRRELLRDGQVFYV--------HNRVRSIEQVAQHIRELVPE 930 Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + + + HG+M++ E+ ++ F + +L+ TT++E G+D+ +A+ +I+ENA H GLAQ Sbjct: 931 ARVVVAHGQMNEDQLENTVEGFWDREYDVLVCTTIVETGLDISNANTLIVENAHHMGLAQ 990 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630 LHQLRGRVGR E LY P L++ SY RLS + D G +A +DL+ R Sbjct: 991 LHQLRGRVGRSRERGYAYFLYPPSQTLTETSYDRLSTIAQNNDLGAGMAVAMKDLEMRGA 1050 Query: 631 GEILGIKQSG 640 G +LG +QSG Sbjct: 1051 GNVLGAEQSG 1060 >gi|88813291|ref|ZP_01128530.1| Transcription-repair coupling factor [Nitrococcus mobilis Nb-231] gi|88789463|gb|EAR20591.1| Transcription-repair coupling factor [Nitrococcus mobilis Nb-231] Length = 1146 Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 142/380 (37%), Positives = 211/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q+ AI +L D+ M R++ GDVG GKT VA+ A V+ Q ++ Sbjct: 594 QFPFEETPDQQQAIDGVLSDLESSRPMDRVVCGDVGFGKTEVAMRAAFIGVQDSRQVAVL 653 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+ + + I +E ++ + AL+ +A G+ I+IGTH L Q Sbjct: 654 VPTTLLAQQHFRNFRDRFADWPIRIEQLSRFRSSKEQNTALQDLAAGKVDIVIGTHKLLQ 713 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 DS+++ L LVI+DE+HRFGV+Q+ +L + T VL++TATPIPRTL + G D+S Sbjct: 714 DSVRFKNLGLVIIDEEHRFGVRQKEQLKRLRTNVDVLMLTATPIPRTLNMALAGLRDMSI 773 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVER 506 I PA R +KT + N D +I+ + L G + Y++ +I RS+ Sbjct: 774 IATPPARRLAVKTFVNQWN--DALIQEACLRELHRGGQVYFLHNEI--------RSIERI 823 Query: 507 FNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 LHE + + I HG+M + + E VM F + +L+ TT+IE GIDV A+ III Sbjct: 824 ARQLHELIPDARVRIAHGQMRETELERVMLDFYHQRFNVLVCTTIIESGIDVPSANTIII 883 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLI 620 A+ GLA+L+QLRGRVGR + L+ P ++ ++ RL + + ED GF + Sbjct: 884 NRADRLGLARLYQLRGRVGRSHHRAYAYLIAPPKNLMTPDAVKRLEAIASLEDLGVGFSL 943 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG +QSG Sbjct: 944 ASHDLEIRGAGELLGDEQSG 963 >gi|241668341|ref|ZP_04755919.1| transcription-repair coupling factor [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876874|ref|ZP_05249584.1| transcription-repair coupling factor [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842895|gb|EET21309.1| transcription-repair coupling factor [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 1139 Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 139/382 (36%), Positives = 209/382 (54%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q AI D+ +DM M R++ GDVG GKT +A+ A A + Q I+ Sbjct: 592 DFPYEETPDQILAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQVAIL 651 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHY K NT + +E+IT + + + + + G IIIGTH L Sbjct: 652 VPTTILAQQHYNSFKDRFANTAVNIEVITRSKTAKAQEELFDNLKKGTVDIIIGTHKLIS 711 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I + L L+I+DE+HRFGV Q+ KL +L M+ATPIPR+L + D+S Sbjct: 712 SKIDFNNLGLLIIDEEHRFGVAQKEKLKALKAEIDILTMSATPIPRSLSMAFSALRDLSI 771 Query: 448 ITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSV 503 I PA R +KT + N I E + R + G + +++ +++ +KK+ + + Sbjct: 772 IASPPAKRLSVKTFVKEYDNNIIREAVSRETI---RGGQIFYLYNKVDTIQKKKEILQEL 828 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 R IAI HG+MS+ + + +M FK+ +L+ TT+IE GID+ +A+ + Sbjct: 829 FPRL---------RIAIAHGQMSEKEIQKIMFDFKHNKYHILLCTTIIETGIDIPNANTL 879 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GF 618 IIE+A + GLAQLHQLRGRVGR + +L ++K++ RL + +T+ GF Sbjct: 880 IIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLVPSEGSITKDATKRLEAIGSTDSLGGGF 939 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GEILG +QSG Sbjct: 940 TLANHDLEIRGAGEILGQEQSG 961 >gi|322375221|ref|ZP_08049735.1| transcription-repair coupling factor [Streptococcus sp. C300] gi|321280721|gb|EFX57760.1| transcription-repair coupling factor [Streptococcus sp. C300] Length = 1167 Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 150/407 (36%), Positives = 231/407 (56%), Gaps = 27/407 (6%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 P+ T Q +I++I +DM + M R+L GDVG GKT VA+ A AV Q V++ Sbjct: 609 FPYVETDDQLRSIEEIKRDMQDSHPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLV 668 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQHY K+ QN + +++++ + + + LE++ +GQ I+IGTH + Sbjct: 669 PTTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQAETLEKLKNGQVDILIGTHRVLSK 728 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 729 DVVFSDLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVI 788 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSV 503 P R P++T ++ N D VI VL E G + Y++ +++ ++K S + + Sbjct: 789 ETPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQIYYLYNKVDTIDRKVSELQEL 844 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + +SI +HG+MS+I E+ + F G +L+ TT+IE G+D+ +A+ + Sbjct: 845 IPE---------ASIGFVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTL 895 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGF 618 IENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF Sbjct: 896 FIENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGF 955 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 IA DL R G +LGI QSG + EL+ LLE IA+++ Sbjct: 956 KIAMRDLSIRGAGNLLGISQSGFIDSV--GFELYSQLLEEAIAKRNG 1000 >gi|325662342|ref|ZP_08150951.1| hypothetical protein HMPREF0490_01690 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471344|gb|EGC74567.1| hypothetical protein HMPREF0490_01690 [Lachnospiraceae bacterium 4_1_37FAA] Length = 1115 Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 144/409 (35%), Positives = 232/409 (56%), Gaps = 17/409 (4%) Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T Q +AI+ +DM K M R++ GDVG GKT VA+ A AV+ Q V + P +L Sbjct: 568 TDDQLNAIEATKKDMESKKIMDRLICGDVGYGKTEVAVRAAFKAVQESKQVVYLVPTTVL 627 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 AQQHY + ++ + V+++ A +RK ++ + G I+IGTH + D +++ Sbjct: 628 AQQHYNTFVQRMKDFPVRVDLLCRFRTPAQQRKTIDDVRKGLVDIVIGTHRVLSDDLKFK 687 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L L+I+DE+ RFGVQ + K+ Q VL +TATPIPRTL ++ +G D+S + E P Sbjct: 688 DLGLLIIDEEQRFGVQHKEKIKQMKENVDVLTLTATPIPRTLHMSLIGIRDMSVLEEPPM 747 Query: 454 GRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512 R PI+T ++ N DE++ E ++ L+ + Y++ ++++ E V +R L Sbjct: 748 DRMPIQTYVMEYN--DEMVREAIERELARDGQVYYVYNRVQDIDE-----VADRIQKLVP 800 Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 +++A HG+M + E +M F NG +LI+TT+IE G+D+ +A+ +II +A+ G Sbjct: 801 E--ANVAFAHGQMREHQLERIMYDFINGEIDVLISTTIIETGLDISNANTMIIHDADRLG 858 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627 L+QL+QLRGRVGR ++ LLY L + + RLS ++ D GF IA DL+ Sbjct: 859 LSQLYQLRGRVGRSNRMAYAFLLYKRDKLLKEVAEKRLSAIREFTDLGSGFKIAMRDLEI 918 Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676 R G +LG +Q G + + +L+ +L A K K + ++P T+V Sbjct: 919 RGAGNLLGAEQHGHMEAV--GYDLYCKMLNEAVKHLKGEVEEEPYTTTV 965 >gi|325128294|gb|EGC51178.1| transcription-repair coupling factor [Neisseria meningitidis N1568] Length = 1305 Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 150/420 (35%), Positives = 232/420 (55%), Gaps = 17/420 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Q ++AP Sbjct: 758 YEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPT 817 Query: 331 GILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +L +QH + F ++ + + N +A + ALE +A G I+IGTH L QD Sbjct: 818 TLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIGTHKLVQDD 876 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G D S IT Sbjct: 877 IKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEGLRDFSLIT 936 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P+ R +KT + P + V E + L G + +++ +++ ++ ER + Sbjct: 937 TAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIENMRERLET 990 Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ III A+ Sbjct: 991 LLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRAD 1048 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLK 626 FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF +A +DL+ Sbjct: 1049 KFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLE 1108 Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686 R GEILG QSG + + L+ +L+ A +D K PDL + G + I L+ Sbjct: 1109 IRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GHQPDLDAPLGITTEIKLH 1164 >gi|255318947|ref|ZP_05360172.1| transcription-repair coupling factor [Acinetobacter radioresistens SK82] gi|262378317|ref|ZP_06071474.1| transcription-repair coupling factor [Acinetobacter radioresistens SH164] gi|255303964|gb|EET83156.1| transcription-repair coupling factor [Acinetobacter radioresistens SK82] gi|262299602|gb|EEY87514.1| transcription-repair coupling factor [Acinetobacter radioresistens SH164] Length = 1153 Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 147/430 (34%), Positives = 228/430 (53%), Gaps = 23/430 (5%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W R+ L +A ++ + R+ K G ++ + + + T Q + Sbjct: 555 WNKAKRKALEQIHDVAAELLHIQARRHAKP--GFAFEIDQSLYMQFASGFAYEETLDQAN 612 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI+ L DM + M R++ GDVG GKT VA+ A AV+ Q ++ P +LAQQHYE Sbjct: 613 AIEATLYDMQKAEPMDRLVCGDVGFGKTEVAMRAAFVAVQNNKQVAVLVPTTLLAQQHYE 672 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 K + + +E+++ K ++ +A G+ I+IGTH L Q+++Q+ L L+I Sbjct: 673 SFKDRFADWPVRIEVLSRFGSNKAHVKNIQDLADGKVDIVIGTHKLLQENVQFKDLGLMI 732 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 VDE+HRFGV+ + ++ +L +TATPIPRTL + G D+S I PA R +K Sbjct: 733 VDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792 Query: 460 TVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515 T + I E I R L G + Y++ +++ E+ N R++V Sbjct: 793 TFVQEHTDASIKEAILR---ELLRGGQVYFLHNEVDSIERTAENIRALVPE--------- 840 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A+ HG+M + + E VM F + +L+ +T+IE GIDV +A+ IIIE A+ GLAQ Sbjct: 841 ARVAVAHGQMRERELEQVMQQFYHKQYNVLVCSTIIETGIDVPNANTIIIERADKLGLAQ 900 Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKE 630 LHQLRGRVGR + LL L ++ RL ++ N GF++A EDL+ R Sbjct: 901 LHQLRGRVGRSHHQAYAYLLVPSIKALKGDAEKRLDAIQRASNLGAGFMLATEDLEIRGA 960 Query: 631 GEILGIKQSG 640 GE+LG +QSG Sbjct: 961 GELLGEQQSG 970 >gi|148270474|ref|YP_001244934.1| transcription-repair coupling factor [Thermotoga petrophila RKU-1] gi|147736018|gb|ABQ47358.1| transcription-repair coupling factor [Thermotoga petrophila RKU-1] Length = 893 Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 135/409 (33%), Positives = 236/409 (57%), Gaps = 17/409 (4%) Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 ++ L MR+Q + + +P + E + +K + P+ T Q+ +I+++L D++ + M R Sbjct: 338 ELVELYMRRQEIQGLSLPGDPE--LEEKFAESFPYIETPDQQQSIEEVLSDLASEKPMDR 395 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 +L GD G GKT VAL A AV +G Q ++ P +LA+QHYE K+ + + VE++ Sbjct: 396 LLCGDAGVGKTEVALRAAFRAVASGKQVAVLVPTTVLARQHYENFKERMEPFGVKVELLD 455 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 + +++ +E++ G+ IIIGTH+L + I++ L LVI+DE+ +FGV+Q+ + + Sbjct: 456 SSRTPREKKEIIEKLKKGEIDIIIGTHSLLNERIEFSDLGLVIIDEEQKFGVEQKERFKK 515 Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 + +VL ++ATPIPRTL + G D S I P GRKP+ + + D++++ Sbjct: 516 LRLSVNVLTLSATPIPRTLHMALSGMKDFSVINSPPPGRKPVYVYVAEYS--DDLVKGAV 573 Query: 477 V-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 + ++ G + ++ ++EE + E F L F IA+ HG+MS E ++ Sbjct: 574 IREINRGGQVIYVHNRVEE--------LPEVFEKLKRMFPELEIAVAHGKMSRRTMERIV 625 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F G +L+ TT+IE G+D+ +A+ +I+++A +GL+QL+QLRGRVGR + + Sbjct: 626 HEFYRGNIDVLLCTTIIENGVDIPNANTLIVDDAHRYGLSQLYQLRGRVGRSDRRAFAYF 685 Query: 595 LYHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640 LY +++ RL VLK+ G IA +D++ R G++LG++Q G Sbjct: 686 LYPKGTPRSALERLKVLKSYTGFGSGLQIALKDMELRGVGDVLGLEQHG 734 >gi|254673347|emb|CBA08563.1| transcription-repair coupling factor [Neisseria meningitidis alpha275] Length = 1375 Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 151/428 (35%), Positives = 235/428 (54%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Sbjct: 820 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 879 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F ++ + + N +A + ALE +A G I+IG Sbjct: 880 QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGLADGTVDIVIG 938 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD+I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G Sbjct: 939 THKLVQDNIRFKSLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 998 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ Sbjct: 999 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 1052 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ ER +L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 1053 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 1110 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III A+ FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF Sbjct: 1111 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1170 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K + PDL + G Sbjct: 1171 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1226 Query: 679 QSIRILLY 686 + I L+ Sbjct: 1227 ITTEIKLH 1234 >gi|15677148|ref|NP_274301.1| transcription-repair coupling factor [Neisseria meningitidis MC58] gi|7226520|gb|AAF41657.1| transcription-repair coupling factor [Neisseria meningitidis MC58] Length = 1379 Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 150/420 (35%), Positives = 233/420 (55%), Gaps = 17/420 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Q ++AP Sbjct: 832 YEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPT 891 Query: 331 GILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +L +QH + F ++ + + N +A + ALE +A G I+IGTH L QD Sbjct: 892 TLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIGTHKLVQDD 950 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G D S IT Sbjct: 951 IKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEGLRDFSLIT 1010 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P+ R +KT + P + V E + L G + +++ +++ ++ ER + Sbjct: 1011 TAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIENMRERLET 1064 Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ III A+ Sbjct: 1065 LLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRAD 1122 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLK 626 FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF +A +DL+ Sbjct: 1123 KFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLE 1182 Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686 R GEILG QSG + + L+ +L+ A +D K + PDL + G + I L+ Sbjct: 1183 IRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1238 >gi|237738602|ref|ZP_04569083.1| transcription-repair coupling factor [Fusobacterium sp. 2_1_31] gi|229424085|gb|EEO39132.1| transcription-repair coupling factor [Fusobacterium sp. 2_1_31] Length = 979 Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 137/375 (36%), Positives = 218/375 (58%), Gaps = 13/375 (3%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF+ T Q AI+D+ +DM M R++ GDVG GKT VA+ A A+ Q V++ P Sbjct: 452 PFTETPGQLKAIEDVKRDMESGKVMDRLVCGDVGYGKTEVAIRAAFKAIMDEKQVVLLVP 511 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHYE + +N I +EI++ + + +++++I +G A +IIGTH L D Sbjct: 512 TTVLAEQHYERFSERFKNYPINIEILSRVQTKKEQEESIKKIENGSADLIIGTHRLLSDD 571 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I+Y + L+I+DE+ +FGV+ + KL + +L +TATPIPRTL L+ LG D+S I Sbjct: 572 IKYNDIGLLIIDEEQKFGVKAKEKLKKLKGDIDILTLTATPIPRTLNLSLLGIRDLSIID 631 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERF 507 P GR+ I+T I N+ D + + + +S + ++I ++ E K R ++ + Sbjct: 632 TSPEGRQKIQTEYIDNNK-DLIRDIIITEVSREGQVFYIFNSVKRIEMKSKELRELLPEY 690 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + IHG+M D + + +F+NG +LIATT+IE GID+ +A+ +IIE Sbjct: 691 --------IKVDYIHGQMLARDIKRAIHNFENGNTDVLIATTIIENGIDIENANTMIIEG 742 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEEDL 625 E GL+Q++QLRGR+GR + S C +L + +KN+ R ++ ++ G ++ ED Sbjct: 743 VEKLGLSQVYQLRGRIGRSNKKSYCYMLMNENKTKNAQKREESIREFDNLTGIDLSMEDS 802 Query: 626 KQRKEGEILGIKQSG 640 K R GEILG KQ G Sbjct: 803 KIRGVGEILGEKQHG 817 >gi|121634996|ref|YP_975241.1| transcription-repair coupling factor [Neisseria meningitidis FAM18] gi|120866702|emb|CAM10454.1| transcription-repair coupling factor [Neisseria meningitidis FAM18] gi|325138289|gb|EGC60858.1| transcription-repair coupling factor [Neisseria meningitidis ES14902] Length = 1375 Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 151/428 (35%), Positives = 235/428 (54%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Sbjct: 820 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 879 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F ++ + + N +A + ALE +A G I+IG Sbjct: 880 QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGLADGTVDIVIG 938 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD+I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G Sbjct: 939 THKLVQDNIRFKSLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 998 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ Sbjct: 999 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 1052 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ ER +L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 1053 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 1110 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III A+ FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF Sbjct: 1111 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1170 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K + PDL + G Sbjct: 1171 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1226 Query: 679 QSIRILLY 686 + I L+ Sbjct: 1227 ITTEIKLH 1234 >gi|300114141|ref|YP_003760716.1| transcription-repair coupling factor [Nitrosococcus watsonii C-113] gi|299540078|gb|ADJ28395.1| transcription-repair coupling factor [Nitrosococcus watsonii C-113] Length = 1158 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 148/424 (34%), Positives = 230/424 (54%), Gaps = 22/424 (5%) Query: 224 ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283 ARER+ ++ A +A+ R KK P+ R PF T Q AI+ Sbjct: 567 ARERVR--DVAAELLAIYAQRAARKKP---PLPTPDSHYAAFARAFPFEETPDQADAIQA 621 Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343 ++ D++ M R++ GDVG GKT VA+ A +AG Q ++ P +LAQQHY+ K Sbjct: 622 VIADLTSDQPMDRLVCGDVGFGKTEVAMRAAFIVSQAGKQVAVLVPTTLLAQQHYQSFKD 681 Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403 + VE+I+ + + + RIA G+A I+IGTH L Q++I + L LVI+DE+ Sbjct: 682 RFADWPARVEVISRFSSRKEQEAVINRIADGRADIVIGTHKLLQENIHFKNLGLVIIDEE 741 Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463 HRFGV+Q+ ++ +L +TATPIPRTL ++ D+S I PA R IKT + Sbjct: 742 HRFGVRQKERMKALRAEVDILTLTATPIPRTLHMSLSNLRDLSIIATPPARRLAIKTFVR 801 Query: 464 PINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522 N D ++ E L + G + Y++ ++E + + +R +L + + I H Sbjct: 802 QWN--DNLLREALLREIKRGGQVYFLHNEVE-----SINKMAQRIQALFPE--AKVGIAH 852 Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582 G+M + + E M +F + +L+ TT+IE GID+ A+ III A+ GLAQL+QLRGR Sbjct: 853 GQMRERELEQTMLNFYHRRFNILVCTTIIETGIDIPSANTIIIHRADKLGLAQLYQLRGR 912 Query: 583 VGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGI 636 VGR + L+ PP ++ ++ RL +++ E+ GF +A D++ R GE+LG Sbjct: 913 VGRSHHRAYAYLIV-PPRSVMTADAVKRLEAIESLEELGAGFTLASHDMEIRGAGELLGK 971 Query: 637 KQSG 640 QSG Sbjct: 972 DQSG 975 >gi|227432633|ref|ZP_03914609.1| transcription-repair coupling factor [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351603|gb|EEJ41853.1| transcription-repair coupling factor [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 1179 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 150/465 (32%), Positives = 253/465 (54%), Gaps = 26/465 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ A E +A + L +++ ++ P + +I K + + T Q Sbjct: 567 EWAKTKRQVAAKIEDIADDLLELYAKREAQQGYVFPPDDHAQI--KFDDSFGYPETPDQI 624 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I++I DM + M R+L GDVG GKT VAL A+ A +G Q +AP IL QQHY Sbjct: 625 RSIEEIKVDMQKLRPMDRLLVGDVGFGKTEVALRAVFKAAHSGKQVAFLAPTTILVQQHY 684 Query: 339 E-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 E + +++ +I + +++ + +E++ + + +++GTH L + + L L Sbjct: 685 ETMLARFSDFPEIKIGVLSRFQTPTQNKMIIEQLQNHEIDVVVGTHRLLSKDVDFSDLGL 744 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +I+DE+ RFGV+ + +L Q T+ VL +TATPIPRTL + +G D+S I PA R P Sbjct: 745 LIIDEEQRFGVKHKERLKQLRTSVDVLTLTATPIPRTLNMAMVGARDLSVIETPPANRYP 804 Query: 458 IKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 I+T ++ ++ + + IE K + G+ Y + ++ +V + L + Sbjct: 805 IQTYVLAMDWKIVRDAIE--KEIARNGQVFYL------HNRVADLDRIVSQIEELIP--S 854 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A IHG+MS+ ES++ F NG +L+ TT+IE G+D+ +A+ +I+ENA+H GLAQ Sbjct: 855 ARVAAIHGQMSETQLESILYDFLNGQYDVLVTTTIIETGVDIPNANTLIVENADHMGLAQ 914 Query: 576 LHQLRGRVGRGEEISSCILLY---HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ Y P S+ + RL +++ TE GF IA DL R Sbjct: 915 LYQLRGRVGRSTRLAYAYFTYPFTRTP-SEEAEKRLEAMRDFTELGSGFRIAMRDLSIRG 973 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQDPD 672 G++LG +Q G + +++ +L+ +A+K K + T P+ Sbjct: 974 AGDLLGKQQHGFIDSV--GYDMYTQMLKDTVAQKQGKQVTTSQPE 1016 >gi|187250582|ref|YP_001875064.1| transcription-repair coupling factor [Elusimicrobium minutum Pei191] gi|186970742|gb|ACC97727.1| Transcription-repair coupling factor [Elusimicrobium minutum Pei191] Length = 1044 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 135/421 (32%), Positives = 225/421 (53%), Gaps = 42/421 (9%) Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313 P+ + ++ + + P+ T Q AI +IL D++++ M R+L GDVG GKT VA+ A Sbjct: 456 PLTGDAQLEAEFADSFPYIQTPDQSQAISEILDDLTRQKTMDRVLVGDVGFGKTEVAMRA 515 Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373 + + Q +++ P ILA QHY+ K + + VE+++ +A ++ +E+I Sbjct: 516 VMRTALSSKQVLVLVPTTILAAQHYKTFVKRMASFPVSVEMLSRFQTKAEQKIIVEKIRK 575 Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433 G I++GTH L I + L LVI+DE+HRFGV+Q+ K+ K H L+++ATPIPR Sbjct: 576 GTVDIVVGTHRLLSKDISFANLGLVIIDEEHRFGVKQKEKIKAKTAGVHTLMLSATPIPR 635 Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493 TL + ++S I P GR P+KT++ P N D ++ + G + Y++ +++ Sbjct: 636 TLNQSLSSLRNLSLIETPPQGRMPVKTIVTPWNN-DLAANAVRQEIGRGGQVYFVYNRVQ 694 Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + S +E L + I + HG+M++ E + +F N +L+A+T+IE Sbjct: 695 -----SMESRLELLKRLVPE--ARICMAHGQMNETALEKTLWAFYNHEYDILLASTIIES 747 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL------------- 600 G+D+ +A+ +IIE+A+ FGLAQL+QLRGR+GRG+ + C L+HP Sbjct: 748 GLDISNANTLIIESAQDFGLAQLYQLRGRIGRGDRKAYC-YLFHPDWLFQKPKDNIEREN 806 Query: 601 -----------------SKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 ++ + RLS L + GF +A D++ R GE+LG +Q G Sbjct: 807 NFEDLKAFLTKKKEADPTETAKKRLSALMEFSELGSGFKLALRDMEIRGAGELLGTRQHG 866 Query: 641 M 641 Sbjct: 867 F 867 >gi|225024865|ref|ZP_03714057.1| hypothetical protein EIKCOROL_01753 [Eikenella corrodens ATCC 23834] gi|224942394|gb|EEG23603.1| hypothetical protein EIKCOROL_01753 [Eikenella corrodens ATCC 23834] Length = 1271 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Sbjct: 716 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 775 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F ++ + + N +A + ALE +A G I+IG Sbjct: 776 QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKVALEGMADGTVDIVIG 834 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G Sbjct: 835 THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 894 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ Sbjct: 895 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 948 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ ER +L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 949 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 1006 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III A+ FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF Sbjct: 1007 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1066 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K + PDL + G Sbjct: 1067 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1122 Query: 679 QSIRILLY 686 + I L+ Sbjct: 1123 ITTEIKLH 1130 >gi|325142431|gb|EGC64835.1| transcription-repair coupling factor [Neisseria meningitidis 961-5945] gi|325198436|gb|ADY93892.1| transcription-repair coupling factor [Neisseria meningitidis G2136] Length = 1375 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 151/428 (35%), Positives = 235/428 (54%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Sbjct: 820 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 879 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F ++ + + N +A + ALE +A G I+IG Sbjct: 880 QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGLADGTVDIVIG 938 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD+I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G Sbjct: 939 THKLVQDNIRFKSLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 998 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ Sbjct: 999 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 1052 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ ER +L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 1053 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 1110 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III A+ FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF Sbjct: 1111 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1170 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K + PDL + G Sbjct: 1171 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1226 Query: 679 QSIRILLY 686 + I L+ Sbjct: 1227 ITTEIKLH 1234 >gi|257126999|ref|YP_003165113.1| transcription-repair coupling factor [Leptotrichia buccalis C-1013-b] gi|257050938|gb|ACV40122.1| transcription-repair coupling factor [Leptotrichia buccalis C-1013-b] Length = 1068 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 141/381 (37%), Positives = 214/381 (56%), Gaps = 20/381 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 N PF T+ Q +AI D+ +DM M RI+ GDVG GKT VA+ A A++ G Q V++ Sbjct: 523 NFPFEETEDQRNAINDVKKDMESPQIMDRIVCGDVGYGKTEVAMRAAFKAIDNGKQVVMV 582 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 AP +LA+QH+E K+ +N I +E ++ + ++ L+ + +G ++IGTH L Sbjct: 583 APTTVLAEQHFERFKRRFENYPITIENLS-RLTKSKSTDILKNLKNGIIDLVIGTHRLLS 641 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D +Q+ L L+I+DE+ +FGV+ + KL + VL +TATPIPRTL L LG +IS Sbjct: 642 DDVQFKNLGLLIIDEEQKFGVKAKEKLKSQREKLDVLTLTATPIPRTLNLAMLGIREISI 701 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R PI T I+ DE I ++ ++ LS + ++I + +++ E Sbjct: 702 IDTPPTNRLPIITEILD---WDEEIIKMAILRELSRDGQVFYIYNDV--------KNMKE 750 Query: 506 RFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + L E + I I+G++ + + + F+NG +LIA+T+IE GIDV +A+ I Sbjct: 751 KLKELKEMLPDFVKIEFINGQLPPKEIKDKLLRFENGQFDILIASTIIENGIDVGNANTI 810 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE----DGFL 619 +IEN GL+Q++QL+GRVGR C LL ++K + + E GF Sbjct: 811 LIENFTGLGLSQVYQLKGRVGRSNRQGYCYLLKTRNITKQGRQKEESMLKVEGIKSGGFQ 870 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 I+ EDLK R GEILG KQ G Sbjct: 871 ISMEDLKIRGAGEILGDKQHG 891 >gi|213612520|ref|ZP_03370346.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 542 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 143/369 (38%), Positives = 207/369 (56%), Gaps = 19/369 (5%) Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI +L DM Q M R++ GDVG GKT VA+ A AVE Q ++ P +LAQQHY+ Sbjct: 2 AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 61 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 + N + +E+++ + + L A G+ I+IGTH L Q ++ L L+I Sbjct: 62 NFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLRDLGLLI 121 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 VDE+HRFGV+ + ++ +L +TATPIPRTL + G D+S I PA R +K Sbjct: 122 VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 181 Query: 460 TVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 T + D ++ R + +L E G + Y++ +E N + ER L + Sbjct: 182 TF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--A 230 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 IAI HG+M + + E VM+ F + +L+ TT+IE GID+ A+ IIIE A+HFGLAQL Sbjct: 231 RIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQL 290 Query: 577 HQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 HQLRGRVGR + LL HP ++ ++ RL + + ED GF +A DL+ R G Sbjct: 291 HQLRGRVGRSHHQAYAWLLTPHPKAMTADAQKRLEAIASLEDLGAGFALATHDLEIRGAG 350 Query: 632 EILGIKQSG 640 E+LG +QSG Sbjct: 351 ELLGEEQSG 359 >gi|254805085|ref|YP_003083306.1| transcription-repair coupling factor [Neisseria meningitidis alpha14] gi|254668627|emb|CBA06236.1| transcription-repair coupling factor [Neisseria meningitidis alpha14] Length = 1375 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 150/420 (35%), Positives = 233/420 (55%), Gaps = 17/420 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Q ++AP Sbjct: 828 YEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPT 887 Query: 331 GILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +L +QH + F ++ + + N +A + ALE +A G I+IGTH L QD Sbjct: 888 TLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIGTHKLVQDD 946 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G D S IT Sbjct: 947 IKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEGLRDFSLIT 1006 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P+ R +KT + P + V E + L G + +++ +++ ++ ER + Sbjct: 1007 TAPSRRLSVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIENMRERLET 1060 Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ III A+ Sbjct: 1061 LLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRAD 1118 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLK 626 FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF +A +DL+ Sbjct: 1119 KFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLE 1178 Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686 R GEILG QSG + + L+ +L+ A +D K + PDL + G + I L+ Sbjct: 1179 IRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1234 >gi|288575748|ref|ZP_06393934.1| transcription-repair coupling factor [Neisseria mucosa ATCC 25996] gi|288567230|gb|EFC88790.1| transcription-repair coupling factor [Neisseria mucosa ATCC 25996] Length = 724 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Sbjct: 169 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 228 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F ++ + + N +A + ALE +A G I+IG Sbjct: 229 QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKSALEGMADGTVDIVIG 287 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G Sbjct: 288 THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 347 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ Sbjct: 348 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 401 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ ER +L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 402 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 459 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III A+ FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF Sbjct: 460 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 519 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K + PDL + G Sbjct: 520 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 575 Query: 679 QSIRILLY 686 + I L+ Sbjct: 576 ITTEIKLH 583 >gi|237743139|ref|ZP_04573620.1| transcription-repair coupling factor [Fusobacterium sp. 7_1] gi|229433435|gb|EEO43647.1| transcription-repair coupling factor [Fusobacterium sp. 7_1] Length = 979 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 142/375 (37%), Positives = 222/375 (59%), Gaps = 13/375 (3%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF+ T +Q AI+D+ +DM M R++ GDVG GKT VA+ A AV Q +++ P Sbjct: 452 PFTETPAQLKAIEDVKRDMESGKVMDRLICGDVGFGKTEVAIRATFKAVMDSKQVILLVP 511 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHYE + +N + +EI++ + + ++L+RI +G A ++IGTH L D Sbjct: 512 TTVLAEQHYERFSERFKNYPVHIEILSRVQSKKEQVESLKRIENGSADLVIGTHRLLSDD 571 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ + L+I+DE+ +FGV+ + KL + VL +TATPIPRTL L+ LG D+S I Sbjct: 572 IKFKDVGLLIIDEEQKFGVKAKEKLKKIKGDIDVLTLTATPIPRTLNLSLLGIRDLSVID 631 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P GR+ I T I N+ I ++I L + EG + ++I + ++ ES + + E Sbjct: 632 TSPEGRQKIHTEYIDNNKNLIKDII--LSEISREG-QVFYIFNSV-KRIESKVKEIRE-- 685 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 L E+ + IHG+M D + + F+NG +L+ATT+IE GID+ +A+ +IIE Sbjct: 686 -LLPEYI--KVDYIHGQMLPRDIKKNIQEFENGNIDVLVATTIIENGIDIENANTMIIEG 742 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEEDL 625 E GL+Q++QLRGR+GR + S C +L + +KN+ R ++ ++ G +A ED Sbjct: 743 VEKLGLSQVYQLRGRIGRSTKKSYCYMLMNENKTKNAKKREESIREFDNLTGLDLAMEDS 802 Query: 626 KQRKEGEILGIKQSG 640 K R GEILG KQ G Sbjct: 803 KIRGVGEILGEKQHG 817 >gi|161870155|ref|YP_001599325.1| transcription-repair coupling factor [Neisseria meningitidis 053442] gi|161595708|gb|ABX73368.1| transcription-repair coupling factor [Neisseria meningitidis 053442] Length = 1371 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Sbjct: 816 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 875 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F ++ + + N +A + ALE +A G I+IG Sbjct: 876 QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 934 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G Sbjct: 935 THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 994 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ Sbjct: 995 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 1048 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ ER +L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 1049 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 1106 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III A+ FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF Sbjct: 1107 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1166 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K + PDL + G Sbjct: 1167 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1222 Query: 679 QSIRILLY 686 + I L+ Sbjct: 1223 ITTEIKLH 1230 >gi|254448008|ref|ZP_05061472.1| transcription-repair coupling factor [gamma proteobacterium HTCC5015] gi|198262434|gb|EDY86715.1| transcription-repair coupling factor [gamma proteobacterium HTCC5015] Length = 1162 Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 142/379 (37%), Positives = 213/379 (56%), Gaps = 15/379 (3%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + PF T Q +AI+ +L D+ + M R++ GDVG GKT VAL A A Q I+ Sbjct: 610 DFPFEETPDQLNAIEAVLDDLVKIQPMDRVVCGDVGFGKTEVALRAAFVAAMNQKQVCIL 669 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH++ + I VE ++ + + + +A G+ I+IGTH L Q Sbjct: 670 VPTTLLAQQHFQNFSDRLADWPIRVESLSRFGSKKQQDAVIADMAEGKVDIVIGTHKLLQ 729 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ +L LVI+DE+ RFGV+ + K+ Q + +L +TATPIPRTL + G D+S Sbjct: 730 SDIRFKELGLVIIDEEQRFGVRHKEKMKQLRSEVDILTLTATPIPRTLNMAMSGLRDLSI 789 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 I P R +KT I N DE+I E + LS G + Y++ ++E N + + + Sbjct: 790 IATPPQRRTGVKTFINEWN--DELIREACQRELSRGGQVYFVHNKVE-----NIQKIAAQ 842 Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 + +++A HG+MS+ + E VM F + LL+ TT+IE GIDV A+ III Sbjct: 843 IEDIVPEARTAVA--HGQMSERELEQVMLDFYHQRVNLLVCTTIIESGIDVPTANTIIIN 900 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIA 621 A+ FGLAQLHQ+RGRVGR + L+ P ++ ++ RL +++ ED GF +A Sbjct: 901 RADRFGLAQLHQMRGRVGRSHHRAYAYLMAPPEKAMTPDAAKRLEAIESLEDLGAGFTLA 960 Query: 622 EEDLKQRKEGEILGIKQSG 640 DL+ R GE+LG +QSG Sbjct: 961 THDLEIRGAGELLGAEQSG 979 >gi|149182807|ref|ZP_01861269.1| transcription-repair coupling factor [Bacillus sp. SG-1] gi|148849474|gb|EDL63662.1| transcription-repair coupling factor [Bacillus sp. SG-1] Length = 1177 Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 140/398 (35%), Positives = 223/398 (56%), Gaps = 21/398 (5%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G + +G + ++ + P+ T+ Q +I +I +DM ++ M R+L GDVG GKT VA+ Sbjct: 603 GYAFSPDGDMQREFETSFPYQETEDQLRSIDEIKKDMERERPMDRLLCGDVGYGKTEVAI 662 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A AV G Q ++ P ILAQQHYE +K+ Q+ + V +++ + + + ++ I Sbjct: 663 RAAFKAVVDGKQVALLVPTTILAQQHYETMKERFQDFGLEVGLLSRFRTKKQQTETIKGI 722 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 G +++GTH + IQY L L+I+DE+ RFGV + K+ Q T VL +TATPI Sbjct: 723 KAGTVDVVVGTHRILSKDIQYRDLGLLIIDEEQRFGVTHKEKIKQLKTNIDVLTLTATPI 782 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI--DEVIERLKVVLSEGKKAYWIC 489 PRTL ++ LG D+S I P R P++T ++ N + E IER L+ + Y++ Sbjct: 783 PRTLHMSMLGVRDLSVIETPPENRFPVQTYVMEYNGVMMKEAIER---ELARDGQVYFLY 839 Query: 490 PQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 ++E E+K +V + +A HG+M++ + ESV+ SF +G +L+ Sbjct: 840 NRVEDIERKAEEISMLVP---------DARVAFAHGKMNETELESVILSFLDGEFDVLVT 890 Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSY 605 TT+IE G+D+ + + +I+ +A+ GL+QL+QLRGRVGR ++ Y L++ + Sbjct: 891 TTIIETGVDIPNVNTLIVYDADRMGLSQLYQLRGRVGRSNRVAYSYFTYRKDKVLTEVAE 950 Query: 606 TRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640 RL +K TE GF IA DL R G ILG +Q G Sbjct: 951 KRLQAIKEFTELGSGFKIAMRDLTIRGAGNILGAQQHG 988 >gi|317970142|ref|ZP_07971532.1| transcription-repair coupling factor [Synechococcus sp. CB0205] Length = 1183 Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 143/425 (33%), Positives = 230/425 (54%), Gaps = 22/425 (5%) Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 K G V+G ++ + P+ PT Q AI D+ +DM Q M R++ GDVG GKT Sbjct: 589 KAPGFAFPVDGPWQNELEDSFPYEPTPDQVKAIADVKRDMEQPQPMDRLVCGDVGFGKTE 648 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VA+ A+ AV AG Q ++AP +LAQQH+ + + I V ++ + R+ Sbjct: 649 VAIRAIFKAVTAGKQVAMLAPTTVLAQQHWRSLSERFAPYPIKVSLLNRFRTSSERKVIQ 708 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428 E + G +++GTH L Q+ +L L++VDE+ RFGV Q+ K+ VL ++A Sbjct: 709 EGLGEGTVDVVVGTHQLLGKGTQFKELGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSA 768 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488 TPIPRTL ++ G ++S IT P R+PIKT + ++ + V ++ L G + +++ Sbjct: 769 TPIPRTLYMSLSGVREMSLITTPPPLRRPIKTHLAALDE-EAVRSAIRQELDRGGQIFYV 827 Query: 489 CPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 P++E E+ R ++ L + HG+M++ + ES M +F G L++ Sbjct: 828 VPRVEGIEEVAEGLRQMIPGLRLL---------VAHGQMAEGELESAMVAFNAGEADLML 878 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKN 603 TT++E G+D+ + I+IE+A FGLAQL+QLRGRVGR I + L++P LS Sbjct: 879 CTTIVESGLDIPRVNTILIEDAHKFGLAQLYQLRGRVGR-SGIQAHAWLFYPGDASLSDA 937 Query: 604 SYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLE 657 + RL ++ G+ +A D++ R G +LG++QSG + F + L +SL E Sbjct: 938 ARQRLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAE 997 Query: 658 IARKD 662 I +D Sbjct: 998 IQGQD 1002 >gi|254412667|ref|ZP_05026440.1| transcription-repair coupling factor [Microcoleus chthonoplastes PCC 7420] gi|196180402|gb|EDX75393.1| transcription-repair coupling factor [Microcoleus chthonoplastes PCC 7420] Length = 1192 Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 136/410 (33%), Positives = 225/410 (54%), Gaps = 17/410 (4%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 + LL + Q + G + ++ + P+ PT Q A++D+ +D+ M R+ Sbjct: 612 VDLLKLYAQRSQRSGYAFPEDSSWQDELEESFPYQPTPDQLKAVQDVKRDLESDRPMDRL 671 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 + GDVG GKT VAL A+ + +G Q +AP IL QQHY +K+ I V ++ Sbjct: 672 VCGDVGFGKTEVALRAIFKVITSGKQVAFLAPTTILTQQHYHTLKERFAPYPIHVGLLNR 731 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 R++ R++ G+ +++GTH + ++++ L +++VDE+ RFGV Q+ K+ Sbjct: 732 FRTAQERKEIQRRLSTGELDVVVGTHQVLGKTVKFRDLGMLVVDEEQRFGVNQKEKIKTL 791 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 T VL +TATPIPRTL ++ G ++S IT P R+ IKT + P N + V ++ Sbjct: 792 KTQVDVLTLTATPIPRTLYMSLSGVREMSLITTPPPSRRSIKTHLAPYN-PEAVRTAIRT 850 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDS 536 L G + +++ P++E + E L E S+ +AI HG+M + + E+ M + Sbjct: 851 ELDRGGQVFYVVPRVE--------GIEEVATKLREMIPSARLAIAHGQMPEGELEATMLT 902 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F +G +LI TT+IE G+D+ + I+IE+A+ FGLAQL+QLRGRVGR + + L+ Sbjct: 903 FSSGEADILICTTIIESGLDIPRVNTILIEDAQRFGLAQLYQLRGRVGRS-GVQAHAWLF 961 Query: 597 HP---PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSG 640 +P LS + RL ++ G+ +A D++ R G +LG +QSG Sbjct: 962 YPKQDTLSDAARKRLRAIQEFTQLGSGYQLATRDMEIRGVGNLLGAEQSG 1011 >gi|148266962|ref|YP_001245905.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus JH9] gi|150393008|ref|YP_001315683.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus JH1] gi|257794256|ref|ZP_05643235.1| transcription-repair coupling factor [Staphylococcus aureus A9781] gi|258420806|ref|ZP_05683742.1| transcription-repair coupling factor [Staphylococcus aureus A9719] gi|258448018|ref|ZP_05696148.1| transcription-repair coupling factor [Staphylococcus aureus A6224] gi|258453836|ref|ZP_05701809.1| transcription-repair coupling factor [Staphylococcus aureus A5937] gi|295407393|ref|ZP_06817190.1| transcription-repair coupling factor [Staphylococcus aureus A8819] gi|297246473|ref|ZP_06930313.1| transcription-repair coupling factor [Staphylococcus aureus A8796] gi|147740031|gb|ABQ48329.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus JH9] gi|149945460|gb|ABR51396.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus JH1] gi|257788228|gb|EEV26568.1| transcription-repair coupling factor [Staphylococcus aureus A9781] gi|257843198|gb|EEV67611.1| transcription-repair coupling factor [Staphylococcus aureus A9719] gi|257858708|gb|EEV81581.1| transcription-repair coupling factor [Staphylococcus aureus A6224] gi|257864007|gb|EEV86762.1| transcription-repair coupling factor [Staphylococcus aureus A5937] gi|285816202|gb|ADC36689.1| Transcription-repair coupling factor [Staphylococcus aureus 04-02981] gi|294967750|gb|EFG43782.1| transcription-repair coupling factor [Staphylococcus aureus A8819] gi|297176660|gb|EFH35922.1| transcription-repair coupling factor [Staphylococcus aureus A8796] gi|312828998|emb|CBX33840.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128631|gb|EFT84634.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus CGS03] gi|329725040|gb|EGG61535.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus 21172] Length = 1168 Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 144/382 (37%), Positives = 213/382 (55%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ ++ E + G I++GTH L Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE+A+ FGL+QL+QLRGRVGR I L HP L++N+ RL +K TE GF Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTENAEDRLQAIKEFTELGSGF 961 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 IA DL R G +LG +Q G Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983 >gi|22298495|ref|NP_681742.1| transcription-repair coupling factor [Thermosynechococcus elongatus BP-1] gi|22294675|dbj|BAC08504.1| transcription-repair coupling factor [Thermosynechococcus elongatus BP-1] Length = 1142 Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 136/409 (33%), Positives = 227/409 (55%), Gaps = 15/409 (3%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 + LL + Q ++ G + +++ + P+ PT Q AI+++ DM M R+ Sbjct: 562 VDLLQLYAQRAQQRGFAFPPDTPWQREMEDSFPYQPTPDQLKAIQEVKADMESDRPMDRL 621 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 + GDVG GKT VA+ A+ AV AG Q ++AP IL QQHY +K+ I V ++ Sbjct: 622 VCGDVGFGKTEVAIRAIFKAVMAGKQVAVLAPTTILTQQHYHTLKERFAPYPIQVGLLNR 681 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 + R+ L+++ G+ +++GTH L +S+++ L L++VDE+ RFGV Q+ K+ Sbjct: 682 FRSERERQDLLQKLKIGEIDVVVGTHQLLSNSVKFRDLGLLVVDEEQRFGVNQKEKIKAL 741 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 T VL ++ATPIPRTL + G ++S IT P R+PI+T + P + + V ++ Sbjct: 742 KTQVDVLTLSATPIPRTLYMALSGVREMSLITTPPPSRRPIQTHLAPYDP-ETVRSAIRQ 800 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537 L G + +++ P++E +V + + + I I HG+M++ + ES M F Sbjct: 801 ELDRGGQVFYVVPRVE-----GIEAVAAKLQGM--VVGARILIAHGQMAEGELESTMLGF 853 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 NG +L+ TT+IE G+D+ + I++E+A+ FGLAQL+QLRGRVGR I + L++ Sbjct: 854 SNGEADILVCTTIIESGLDIPRVNTILVEDAQRFGLAQLYQLRGRVGRA-GIQAHAWLFY 912 Query: 598 PP---LSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSG 640 P L+ + RL ++ G+ +A D++ R G +LG +Q G Sbjct: 913 PRQEVLTDAARQRLRAIQEFTQLGSGYQLAIRDMEIRGVGNLLGAQQHG 961 >gi|332971576|gb|EGK10526.1| transcription-repair coupling factor [Kingella kingae ATCC 23330] Length = 1126 Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 155/452 (34%), Positives = 240/452 (53%), Gaps = 19/452 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + Q + T+ Q +AI +++D++Q M R++ Sbjct: 553 LLNLYAQRAAQTGFKFEINELDYQAFADGFGYEETEDQAAAILAVMKDLTQAKPMDRLIC 612 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VAL A AV G Q ++AP +L +QH + + + ++ Sbjct: 613 GDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAKNFADRFADFPVKTAALSRFN 672 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + L+ +A+G I+IGTH L QD I + L LVI+DE+HRFGV+Q+ +L + Sbjct: 673 SSKETKATLDGMANGTVDIVIGTHKLVQDDIVFKNLGLVIIDEEHRFGVRQKEQLKRLRA 732 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKV 477 +L +TATPIPRTL + G D S IT P+ R +KT + P + I E + R Sbjct: 733 NVDLLTLTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSIQEAVLR--- 789 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537 L G + +++ +++ + N R +E N L E + I + HG++ + + E VM F Sbjct: 790 ELKRGGQVFFLHNEVDTIE--NMRDKLE--NLLPE---ARIGVAHGQLRERELEQVMRDF 842 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 N +L+ +T+IE GID+ +A+ III A+ FGLAQLHQLRGRVGR + LL Sbjct: 843 LNQKFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTP 902 Query: 598 PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654 ++K++ RL + ++ GF +A +DL+ R GEILG QSG + + L+ Sbjct: 903 EFITKDAEKRLDAIAAADELGAGFALAMQDLEIRGAGEILGEGQSG--EMMQVGLTLYTE 960 Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686 +L+ A +D K + PDL + G S I L+ Sbjct: 961 MLKQAVRDLKK--GRVPDLDAPLGVSTEIKLH 990 >gi|325200091|gb|ADY95546.1| transcription-repair coupling factor [Neisseria meningitidis H44/76] Length = 1379 Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Sbjct: 824 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 883 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F ++ + + N +A + ALE +A G I+IG Sbjct: 884 QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 942 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G Sbjct: 943 THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 1002 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ Sbjct: 1003 LRDFSLITTAPSRRLSVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 1056 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ ER +L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 1057 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 1114 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III A+ FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF Sbjct: 1115 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1174 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K + PDL + G Sbjct: 1175 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1230 Query: 679 QSIRILLY 686 + I L+ Sbjct: 1231 ITTEIKLH 1238 >gi|281412781|ref|YP_003346860.1| DEAD/DEAH box helicase domain protein [Thermotoga naphthophila RKU-10] gi|281373884|gb|ADA67446.1| DEAD/DEAH box helicase domain protein [Thermotoga naphthophila RKU-10] Length = 893 Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 134/409 (32%), Positives = 236/409 (57%), Gaps = 17/409 (4%) Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 ++ L M++Q + + +P + E + +K + P+ T Q+ +I+++L D++ + M R Sbjct: 338 ELVELYMKRQEAQGLSLPGDPE--LEEKFAESFPYIETPDQQQSIEEVLYDLASEKPMDR 395 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 +L GD G GKT VAL A AV +G Q ++ P +LA+QHYE K+ + + VE++ Sbjct: 396 LLCGDAGVGKTEVALRAAFRAVVSGKQVAVLVPTTVLARQHYENFKERMETFGVKVELLD 455 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 + +++ +E++ G+ IIIGTH+L + I++ L LVI+DE+ +FGV+Q+ + + Sbjct: 456 SSRTAREKKEIIEKLKKGEIDIIIGTHSLLNERIEFSDLGLVIIDEEQKFGVEQKERFKK 515 Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 + +VL ++ATPIPRTL + G D S I P GRKP+ + + D++++ Sbjct: 516 LRLSVNVLTLSATPIPRTLHMALSGMKDFSVINSPPPGRKPVYVYVAEYS--DDLVKGAV 573 Query: 477 V-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 + ++ G + ++ ++EE + E F L F IA+ HG+MS E ++ Sbjct: 574 IREINRGGQVIYVHNRVEE--------LPEVFEKLKRMFPELEIAVAHGKMSRRTMERIV 625 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F G +L+ TT+IE G+D+ +A+ +I+++A +GL+QL+QLRGRVGR + + Sbjct: 626 HEFYRGNIDVLLCTTIIENGVDIPNANTLIVDDAHRYGLSQLYQLRGRVGRSDRRAFAYF 685 Query: 595 LYHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640 LY +++ RL VLK+ G IA +D++ R G++LG++Q G Sbjct: 686 LYPKGTPRSALERLKVLKSYTGFGSGLQIALKDMELRGVGDVLGLEQHG 734 >gi|296453487|ref|YP_003660630.1| DEAD/DEAH box helicase domain-containing protein [Bifidobacterium longum subsp. longum JDM301] gi|296182918|gb|ADG99799.1| DEAD/DEAH box helicase domain protein [Bifidobacterium longum subsp. longum JDM301] Length = 877 Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 144/338 (42%), Positives = 198/338 (58%), Gaps = 24/338 (7%) Query: 176 VEALSR-LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233 EALS+ +P VLPE + K K+ AEAF IH+P F+ A E L Y+E Sbjct: 288 AEALSQSIPDVLPESVRK----AKNLMHRAEAFLAIHDPASTTRFK---EAIETLRYEEA 340 Query: 234 LAGQIALLLMRKQFKKEIG--IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 Q +LL R K P+ V + + + ++PFS T Q+ I DI D++ Sbjct: 341 FVSQTSLLKARSHAHKSAAHSCPL-VTDSLRDQFIASLPFSLTAGQQQVIHDIAADLAHD 399 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-- 349 M R+LQG+VGSGKT+VAL AM AV+AG QAV++AP +LA+QH E I + + + Sbjct: 400 WPMQRLLQGEVGSGKTVVALAAMLQAVDAGYQAVLVAPTQVLAEQHAETIGRMVEQLKPA 459 Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409 I V ++TG M A RRKAL + G+ II+ THA F + Q L LV++DEQHRFGV+ Sbjct: 460 IPVTLLTGGMKLAARRKALAAASSGEPGIIVATHAAFSKTFQAPHLALVVIDEQHRFGVE 519 Query: 410 QRLKL---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466 QR L T T PH+L+MTATPIPRT +T GD+DIS +TE P GRKPI+TV+ +N Sbjct: 520 QRESLNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRTVV--VN 577 Query: 467 RID-----EVIERLKVVLSEGKKAYWICPQIEEKKESN 499 D + ++ + G++AY +CP+I+ E N Sbjct: 578 EADAATMGRMFAHIRARVDAGERAYIVCPRIDADDEGN 615 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 72/193 (37%), Positives = 103/193 (53%), Gaps = 2/193 (1%) Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 + +R L + A + GR D K VM F G +L++TTVIEVG+DV AS Sbjct: 682 IADRLQKLPQFQGIRFATLTGRDKDDVKTQVMADFAGGETPILVSTTVIEVGVDVKQASC 741 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622 I+I +A+ +GL+QLHQLRGRVGRG S L+ + RL V+ ++ DG IA+ Sbjct: 742 IVIFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHHSLDGAEIAQ 801 Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTSVRGQSI 681 DL+ R G++LG QSG L + D+ ++ AR A+ +L DP+L Q Sbjct: 802 ADLEFRGAGDVLGDAQSGGKSSLKLLRVVKDADMIADARTRAEQLLAADPELAD-EVQLA 860 Query: 682 RILLYLYQYNEAF 694 +L + NE F Sbjct: 861 GAVLDFTRGNETF 873 >gi|4090863|gb|AAC98900.1| transcription-repair coupling factor [Listeria monocytogenes] Length = 1190 Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 143/430 (33%), Positives = 234/430 (54%), Gaps = 21/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW ++ A + +A + L ++ +K G + + ++ ++ P+ T+ Q Sbjct: 584 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSADDEMQREFEEAFPYQETEDQL 641 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I +I +DM + M R+L GDVG GKT VAL A A+ G Q + P ILAQQH+ Sbjct: 642 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 701 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E +K+ Q I + +++ + + + L+ + +G +++GTH L ++Y L L+ Sbjct: 702 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 761 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV + K+ Q + VL +TATPIPRTL ++ LG D+S I PA R P+ Sbjct: 762 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 821 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T + N + E IER L+ + Y++ ++E S+ ++ + + Sbjct: 822 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------SITQKADEISAMVPD 870 Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A HG+M + + ESV+ SF G +L+ TT+IE G+D+ + + + +++A+ GL+Q Sbjct: 871 ARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 930 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGRVGR I+ +Y L + + RLS +K TE GF IA DL R Sbjct: 931 LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 990 Query: 631 GEILGIKQSG 640 G ILG +Q G Sbjct: 991 GNILGAQQHG 1000 >gi|42526796|ref|NP_971894.1| transcription-repair coupling factor [Treponema denticola ATCC 35405] gi|41817111|gb|AAS11805.1| transcription-repair coupling factor [Treponema denticola ATCC 35405] Length = 1155 Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 140/378 (37%), Positives = 219/378 (57%), Gaps = 17/378 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q + I ++ +DM + M R++ GDVG GKT VA+ A AV +G Q ++P Sbjct: 613 PYEETDDQLTCIAEVKEDMEKPVPMDRLICGDVGYGKTEVAMRAAFKAVMSGKQVAFLSP 672 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 IL +QH+E + K +N + + ++ +P+ ++K LE++ G+ I+IGTH + Q Sbjct: 673 TTILTEQHFETLDKRFKNFPVKLARLSRFVPKGEQKKVLEKLKKGEVDILIGTHRIIQKD 732 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+IVDE+ RFGV+ + +L Q L ++ATPIPRTL ++ L D+S I Sbjct: 733 VVFKDLGLMIVDEEQRFGVKDKERLKQMKHNVDCLSLSATPIPRTLHMSLLKIRDMSVIA 792 Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P RKP++TVI N ++ EVI R G + +++ ++E E+ F Sbjct: 793 TPPQNRKPVETVIAEFNAEKVAEVIRRES---ERGGQVFYLHNRVESLDETLF-----ML 844 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 SL I HG+MS E + + F G ++LIATT+IE GID+ +A+ III+ Sbjct: 845 QSLLPEIM--IETAHGQMSPNQLEEIFERFSLGGFQVLIATTIIENGIDIPNANTIIIDR 902 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAE 622 A+ +G++QL+QLRGRVGR ++ + LLY LS+ + RL V+ + TE GF IA Sbjct: 903 ADMYGVSQLYQLRGRVGRSDKKAYAYLLYPDDKALSEIAMKRLQVISDFTELGSGFKIAM 962 Query: 623 EDLKQRKEGEILGIKQSG 640 +D++ R G +LG +QSG Sbjct: 963 KDMEIRGAGNLLGREQSG 980 >gi|223983659|ref|ZP_03633835.1| hypothetical protein HOLDEFILI_01116 [Holdemania filiformis DSM 12042] gi|223964356|gb|EEF68692.1| hypothetical protein HOLDEFILI_01116 [Holdemania filiformis DSM 12042] Length = 1147 Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 141/408 (34%), Positives = 229/408 (56%), Gaps = 17/408 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + Q ++ IG + + Q+ + + T Q A+++I +DM Q M R+L Sbjct: 570 LVKLYSQREENIGYAYGPDTPLQQEFEDDFDYDLTPDQALAVQEIKKDMMQPKPMDRLLC 629 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VAL A A+ G Q + P IL+ QH K +N I +E++ + Sbjct: 630 GDVGFGKTEVALRAAFKAITEGKQVAFLCPTTILSLQHTATAMKRFENFPIRIEVLNRFV 689 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 ++ +++ L + G+ +IIGTH + +Q++ L L+++DE+ RFGV+ + K+ + Sbjct: 690 VESKQKEILRELKEGKVDMIIGTHRILSKDVQFHDLGLLVIDEEQRFGVEHKEKIKEMKE 749 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKV 477 + VL ++ATPIPRTL ++ +G +S++ P+ R P++T +I NR + EVIER Sbjct: 750 SIDVLSLSATPIPRTLQMSLIGIRSLSQLETPPSNRMPVQTYVIEKNRSLVKEVIER--- 806 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537 L+ + +++ I+E +V + + + IA+ HG+MS + E VM F Sbjct: 807 ELARQGQVFYLFNNIQE-----IYNVARQIK--QDVPEAEIAVAHGKMSRDEIEEVMMQF 859 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 + +LI TT+IE GID+ +A+ I+IENA+ FGLAQL+Q++GRVGR + I+ L+ Sbjct: 860 TDNEVNVLICTTIIETGIDIPNANTILIENADTFGLAQLYQIKGRVGRSDRIAYAYLMVR 919 Query: 598 PPLSKN--SYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640 P N + RL +K TE G+ IA DL R G++LG QSG Sbjct: 920 PRKQVNEIAQKRLQAIKEFTELGSGYKIAMRDLTIRGAGDLLGPSQSG 967 >gi|258407227|ref|ZP_05680372.1| transcription-repair coupling factor [Staphylococcus aureus A9763] gi|257841185|gb|EEV65634.1| transcription-repair coupling factor [Staphylococcus aureus A9763] Length = 1168 Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 144/382 (37%), Positives = 213/382 (55%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ ++ E + G I++GTH L Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 843 KREQLQVLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE+A+ FGL+QL+QLRGRVGR I L HP L++N+ RL +K TE GF Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTENAEDRLQAIKEFTELGSGF 961 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 IA DL R G +LG +Q G Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983 >gi|304387420|ref|ZP_07369611.1| transcription-repair coupling factor [Neisseria meningitidis ATCC 13091] gi|304338513|gb|EFM04632.1| transcription-repair coupling factor [Neisseria meningitidis ATCC 13091] Length = 1301 Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Sbjct: 746 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 805 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F ++ + + N +A + ALE +A G I+IG Sbjct: 806 QVAVLAPTTLLVEQHAQNFSDRFADFPVKVAGLSRFNNSKA-TKAALEGMADGTVDIVIG 864 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G Sbjct: 865 THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 924 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ Sbjct: 925 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 978 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ ER +L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 979 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 1036 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III A+ FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF Sbjct: 1037 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1096 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K + PDL + G Sbjct: 1097 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1152 Query: 679 QSIRILLY 686 + I L+ Sbjct: 1153 ITTEIKLH 1160 >gi|167836965|ref|ZP_02463848.1| transcription-repair coupling factor [Burkholderia thailandensis MSMB43] Length = 1189 Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 161/431 (37%), Positives = 232/431 (53%), Gaps = 23/431 (5%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q Sbjct: 627 KFADSFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQ 686 Query: 324 AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 +++P +LA+QH + FI ++ IVE+ + A+++I G I+IGT Sbjct: 687 VALLSPTTLLAEQHTQTFIDRFADWPVKIVELSRFKSTK-EVNTAIQQINEGSVDIVIGT 745 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G Sbjct: 746 HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 805 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNF 500 D S I P R IKT + DE + R ++ L G + Y++ ++E + N Sbjct: 806 RDFSVIATAPQKRLAIKTFV---RSEDESVIREAMLRELKRGGQVYFLHNEVETIE--NR 860 Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560 R+++E + IAI HG+M + + E VM F +L+ TT+IE GIDV A Sbjct: 861 RAMLEALVP-----EARIAIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSA 915 Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616 + II+ A+ FGLAQLHQLRGRVGR + LL H P L+K + RL ++ E+ Sbjct: 916 NTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELG 975 Query: 617 -GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 GF +A DL+ R GE+LG KQSG + Q L+ +L A K K+ ++PDLT+ Sbjct: 976 SGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLTA 1031 Query: 676 VRGQSIRILLY 686 + I L+ Sbjct: 1032 PLAATTEINLH 1042 >gi|282896750|ref|ZP_06304758.1| Transcription-repair coupling factor [Raphidiopsis brookii D9] gi|281198468|gb|EFA73356.1| Transcription-repair coupling factor [Raphidiopsis brookii D9] Length = 1202 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 138/380 (36%), Positives = 212/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ PT Q A++D+ +DM M R++ GDVG GKT VA+ A+ AV AG Q ++ Sbjct: 626 SFPYQPTIDQLKAVQDVKRDMESPRPMDRLVCGDVGFGKTEVAIRAIFKAVTAGKQVALL 685 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 AP IL QQHY IK+ I V ++ +R +R+ G+ I++GTH L Sbjct: 686 APTTILTQQHYHTIKERFAPYPIHVGLLNRFRSPEEKRNIQKRLLTGELDIVVGTHQLLG 745 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +Q+ L L+++DE+ RFGV Q+ K+ T VL ++ATPIPRTL ++ G ++S Sbjct: 746 KGVQFKDLGLLVIDEEQRFGVNQKEKIKTLKTHLDVLTLSATPIPRTLYMSLSGIREMSL 805 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 IT P R+PI+T + P+N V ++ L G + +++ P++E +E+ R Sbjct: 806 ITTPPPTRRPIQTHLAPLNP-QIVSSAIRQELDRGGQVFYVVPRVEGIEETTTR------ 858 Query: 508 NSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 L E S I HG+M + ES M +F N +L+ TT+IE G+D+ + I+IE Sbjct: 859 --LREMIPSGRFVIAHGQMDESQLESTMLTFSNHEADILVCTTIIESGLDIPRVNTILIE 916 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLK---NTEDGFLI 620 +A FGL+QL+QLRGRVGR I + L++P LS + RL ++ G+ + Sbjct: 917 DAHRFGLSQLYQLRGRVGRA-GIQAHAWLFYPKQRELSDAARQRLRAIQEFTQLGSGYQL 975 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A D++ R G +LG +QSG Sbjct: 976 AMRDMEIRGVGNLLGAEQSG 995 >gi|86606417|ref|YP_475180.1| transcription-repair coupling factor [Synechococcus sp. JA-3-3Ab] gi|86554959|gb|ABC99917.1| transcription-repair coupling factor [Synechococcus sp. JA-3-3Ab] Length = 1156 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 141/386 (36%), Positives = 214/386 (55%), Gaps = 19/386 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T Q A+++I +DM M R+L GDVG GKT VA+ A+ AV AG Sbjct: 597 QEFEESFPYPLTPDQIRAVQEIKRDMESPRPMDRLLCGDVGFGKTEVAIRAIFKAVTAGK 656 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++AP IL QQHY +K+ I V ++ +++ L R+ G+ +I+GT Sbjct: 657 QVALLAPTTILTQQHYHTLKERFAPYPIQVGLLNRFRTPEEKKEILARLKSGELDVIVGT 716 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +Q+ L L+++DE+ RFGV Q+ K+ T VL +TATPIPRTL + G Sbjct: 717 HQLLGKDVQFRDLGLLVIDEEQRFGVNQKEKIKLLKTQVDVLTLTATPIPRTLYMALSGL 776 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIE--EKKESN 499 ++S I P R+PIKT + P N EVI ++ L G + +++ +IE E+ + Sbjct: 777 REMSLIQTPPPSRRPIKTHLSPYN--PEVIRTAIRQELDRGGQVFYVVNRIEGIEETSAK 834 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 R V + IAI HG+M + + E+ M +F NG +L+ TT+IE G+D+ Sbjct: 835 LREWVP---------GARIAIAHGQMPEGELEATMLAFNNGEIDILVCTTIIESGLDIPR 885 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NT 614 + I+IENA+ FGLAQL+QLRGRVGR + L Y L++ + RL ++ Sbjct: 886 VNTILIENAQEFGLAQLYQLRGRVGRAGIQAHAWLFYREDGILTEEARKRLQAIQEFTQL 945 Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSG 640 G+ +A D++ R G +LG +QSG Sbjct: 946 GSGYQLALRDMEIRGIGNLLGTQQSG 971 >gi|291517427|emb|CBK71043.1| RecG-like helicase [Bifidobacterium longum subsp. longum F8] Length = 877 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 144/338 (42%), Positives = 198/338 (58%), Gaps = 24/338 (7%) Query: 176 VEALSR-LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233 EALS+ +P VLPE + K K+ AEAF IH+P F+ A E L Y+E Sbjct: 288 AEALSQSIPDVLPESVRK----AKNLMHRAEAFLAIHDPASTTRFK---EAIETLRYEEA 340 Query: 234 LAGQIALLLMRKQFKKEIG--IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 Q +LL R K P+ V + + + ++PFS T Q+ I DI D++ Sbjct: 341 FVSQTSLLKARSHAHKSAAHSCPL-VTDSLRDQFIASLPFSLTAGQQQVIHDIAADLAHD 399 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-- 349 M R+LQG+VGSGKT+VAL AM AV+AG QAV++AP +LA+QH E I + + + Sbjct: 400 WPMQRLLQGEVGSGKTVVALAAMLQAVDAGYQAVLVAPTQVLAEQHAETIGRMVEQLKPA 459 Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409 I V ++TG M A RRKAL + G+ II+ THA F + Q L LV++DEQHRFGV+ Sbjct: 460 IPVTLLTGGMKLAARRKALAAASSGEPGIIVATHAAFSKTFQAPHLALVVIDEQHRFGVE 519 Query: 410 QRLKL---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466 QR L T T PH+L+MTATPIPRT +T GD+DIS +TE P GRKPI+TV+ +N Sbjct: 520 QRESLNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRTVV--VN 577 Query: 467 RID-----EVIERLKVVLSEGKKAYWICPQIEEKKESN 499 D + ++ + G++AY +CP+I+ E N Sbjct: 578 EADAATMGRMFAHIRARVDAGERAYIVCPRIDADDEEN 615 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 72/193 (37%), Positives = 102/193 (52%), Gaps = 2/193 (1%) Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 + +R L + A + GR D K VM F G +L++TTVIEVG+DV AS Sbjct: 682 IADRLQKLPQFQGIRFATLTGRDKDDVKTQVMADFAGGETPILVSTTVIEVGVDVKQASC 741 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622 I+I +A+ +GL+QLHQLRGRVGRG S L+ + RL V+ ++ DG IA+ Sbjct: 742 IVIFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHHSLDGAEIAQ 801 Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTSVRGQSI 681 DL+ R G++LG QSG L + D+ ++ AR A +L DP+L Q Sbjct: 802 ADLEFRGAGDVLGDAQSGGKSSLKLLRVVKDADMIADARTRAGQLLAADPELAG-EVQLA 860 Query: 682 RILLYLYQYNEAF 694 +L + NE F Sbjct: 861 GAVLDFTRGNETF 873 >gi|116871596|ref|YP_848377.1| transcription-repair coupling factor [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740474|emb|CAK19594.1| transcription-repair coupling factor [Listeria welshimeri serovar 6b str. SLCC5334] Length = 1179 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 143/430 (33%), Positives = 234/430 (54%), Gaps = 21/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW ++ A + +A + L ++ +K G + + ++ ++ P+ T+ Q Sbjct: 573 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSADDEMQREFEEAFPYQETEDQL 630 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I +I +DM + M R+L GDVG GKT VAL A A+ G Q + P ILAQQH+ Sbjct: 631 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E +K+ Q I + +++ + + + L+ + +G I++GTH L ++Y L L+ Sbjct: 691 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDIVVGTHRLLSKDVEYQDLGLL 750 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 +VDE+ RFGV + K+ Q + VL +TATPIPRTL ++ LG D+S I PA R P+ Sbjct: 751 VVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T + N + E IER L+ + Y++ ++E S+ ++ + + Sbjct: 811 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------SITQKADEISAMVPD 859 Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A HG+M + + ESV+ SF G +L+ TT+IE G+D+ + + + +++A+ GL+Q Sbjct: 860 ARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 919 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGRVGR I+ +Y L + + RLS +K TE GF IA DL R Sbjct: 920 LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 979 Query: 631 GEILGIKQSG 640 G ILG +Q G Sbjct: 980 GNILGAQQHG 989 >gi|160902853|ref|YP_001568434.1| DEAD/DEAH box helicase domain-containing protein [Petrotoga mobilis SJ95] gi|160360497|gb|ABX32111.1| DEAD/DEAH box helicase domain protein [Petrotoga mobilis SJ95] Length = 974 Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 134/399 (33%), Positives = 220/399 (55%), Gaps = 25/399 (6%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 GI + + ++ +K P+ T QE +IK++++D+ + M R+L GD G GKT VA+ Sbjct: 423 GIQLFGDPELEEKFKETFPYVETPDQEKSIKEVMRDLESERPMDRLLSGDSGFGKTEVAM 482 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A V + Q +++AP ILA+QHYE K+ + I + ++T + Q ++ E I Sbjct: 483 RAAFRTVVSNYQVLLLAPTTILAKQHYENFKQRMDSFGIKIALVTRHKTQKEKKDLFESI 542 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 GQ I+IGTHAL D +Q L LVIVDE+ RFGV Q+ K + + + L+M+ATPI Sbjct: 543 GKGQVDIVIGTHALLSDLLQVKNLGLVIVDEEQRFGVLQKEKFKKLSDGVNFLMMSATPI 602 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL--SEGKKAYWIC 489 PRTL ++ G DIS I+ P GR PI+T I + + + R ++ S G + +I Sbjct: 603 PRTLYMSISGLRDISTISTPPVGRLPIQTF---IGKYSDKLVRTAILREKSRGGQVIYIH 659 Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-----SIAIIHGRMSDIDKESVMDSFKNGTCKL 544 +++E N LH+ + IA++HG + ++ +G L Sbjct: 660 NRVQE------------LNELHKKLRTLIPEIKIAMVHGGTPKKEFIKSINDLYDGNIDL 707 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604 L++TT+IE GID+ + + +I+++ E +G++QL+Q++GRVGR + L+ ++ + Sbjct: 708 LLSTTIIENGIDIPNVNTLILDDPERYGISQLYQIKGRVGRSNRRAFVYFLFKKEVTPQT 767 Query: 605 YTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 RL +K + G +A DL+ R G+ILGI+Q G Sbjct: 768 KKRLEAIKQYNEPGSGLKLALRDLEIRGYGDILGIEQKG 806 >gi|328467970|gb|EGF38997.1| transcription-repair coupling factor [Listeria monocytogenes 1816] Length = 1179 Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 143/430 (33%), Positives = 234/430 (54%), Gaps = 21/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW ++ A + +A + L ++ +K G + + ++ ++ P+ T+ Q Sbjct: 573 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSADDEMQREFEEAFPYQETEDQL 630 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I +I +DM + M R+L GDVG GKT VAL A A+ G Q + P ILAQQH+ Sbjct: 631 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E +K+ Q I + +++ + + + L+ + +G +++GTH L ++Y L L+ Sbjct: 691 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 750 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV + K+ Q + VL +TATPIPRTL ++ LG D+S I PA R P+ Sbjct: 751 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T + N + E IER L+ + Y++ ++E S+ ++ + + Sbjct: 811 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------SITQKADEISAMVPD 859 Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A HG+M + + ESV+ SF G +L+ TT+IE G+D+ + + + +++A+ GL+Q Sbjct: 860 ARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 919 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGRVGR I+ +Y L + + RLS +K TE GF IA DL R Sbjct: 920 LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 979 Query: 631 GEILGIKQSG 640 G ILG +Q G Sbjct: 980 GNILGAQQHG 989 >gi|307710364|ref|ZP_07646805.1| transcription-repair coupling factor [Streptococcus mitis SK564] gi|307618956|gb|EFN98091.1| transcription-repair coupling factor [Streptococcus mitis SK564] Length = 1169 Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 150/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +I++I +DM M R+L GDVG GKT VA+ A AV Q V++ P Sbjct: 610 PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLVP 669 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY K+ QN + +++++ + + + LE++ +GQ I+IGTH + Sbjct: 670 TTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTETLEKLKNGQVDILIGTHRVLSKD 729 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 730 VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R P++T ++ N D VI VL E G + Y++ +++ ++ ++ Sbjct: 790 TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIDQK 837 Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E +SI +HGRMS+I E+ + F G +L+ TT+IE G+D+ +A+ + I Sbjct: 838 VSELQELIPEASIGYVHGRMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620 ENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF I Sbjct: 898 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 A DL R G +LG QSG + EL+ LLE IA+++ Sbjct: 958 AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000 >gi|93006488|ref|YP_580925.1| transcription-repair coupling factor [Psychrobacter cryohalolentis K5] gi|92394166|gb|ABE75441.1| transcription-repair coupling factor [Psychrobacter cryohalolentis K5] Length = 1243 Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 157/448 (35%), Positives = 239/448 (53%), Gaps = 25/448 (5%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKIL--RNIPFSPTKSQESAIKDILQDMSQKNRML 295 +A L+ Q ++E + I+ + I+Q L F T Q SAI +++DM Q M Sbjct: 654 VAAELLNIQARREAKVGIHFKIDISQYELFASQFAFEETPDQASAIHAVMEDMKQNQPMD 713 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++ GDVG GKT VA+ A AV AG Q ++ P +LA QH + + + + +E + Sbjct: 714 RLICGDVGFGKTEVAMRAAFIAVSAGYQVAVLVPTTLLAGQHEDNFRNRFADWPVRIETL 773 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 + + H+ L +A G+ I+IGTH L Q +++ L L+IVDE+HRFGV+ + ++ Sbjct: 774 SRFGGKKHQDTVLTDLAAGKVDIVIGTHKLLQPDVKFSNLGLMIVDEEHRFGVRHKERIK 833 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ER 474 T + MTATPIPRTL + G D+S I PA R IKT + + + D ++ E Sbjct: 834 AIQTDVDSMSMTATPIPRTLNMALSGMRDMSIIATPPARRLAIKTFV--MQKTDALMKEA 891 Query: 475 LKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532 + L G + Y + + E+ R +V + + + HG+M + E Sbjct: 892 ILRELLRGGQVYLLHNDVASIERMAETIRELVPE---------ARVGVAHGQMQERQLEQ 942 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 VM + + +LI +T+IE GIDV +A+ IIIE A+ FGLAQLHQLRGRVGR + C Sbjct: 943 VMQQYYHKKFNVLICSTIIETGIDVPNANTIIIERADKFGLAQLHQLRGRVGRSHHQAYC 1002 Query: 593 ILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647 LL L ++ RL ++ GF++A EDL+ R GEILG +QSG + + Sbjct: 1003 YLLVPSIKGLKGDAKRRLHAIERANTLGAGFMLASEDLEIRGAGEILGKQQSGNMQAIGF 1062 Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTS 675 L+ +LE A K K ++PDL++ Sbjct: 1063 --SLYMDMLERATKAIK--AGKEPDLST 1086 >gi|315037511|ref|YP_004031079.1| transcription-repair coupling factor [Lactobacillus amylovorus GRL 1112] gi|312275644|gb|ADQ58284.1| transcription-repair coupling factor [Lactobacillus amylovorus GRL 1112] Length = 1164 Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 146/431 (33%), Positives = 231/431 (53%), Gaps = 21/431 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ + E +A + L +++ +K G + + + ++ P+ T Q Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQRQFDDAFPYPETPDQL 620 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +IK+I +DM + M R+L GDVG GKT VAL A A++ Q + P ILAQQHY Sbjct: 621 RSIKEIKEDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAIQDNKQVAFLVPTTILAQQHY 680 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I+ ++ + +++ A ++ +E + G+ I++GTH L + + L L+ Sbjct: 681 ETIQDRFKDFPVNTAMLSRFQTPAESKEIIEGLEDGKIDIVVGTHRLLSKDVHFKDLGLL 740 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + KL Q VL +TATPIPRTL ++ +G D+S + P R PI Sbjct: 741 IVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800 Query: 459 KTVI---IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 +T + IP D + +K G + +++ +I S+ VE+ L + Sbjct: 801 QTYVMEQIPSVIKDACLREMK----RGGQVFYLHNRI-----SDIDETVEKLQQLIPN-- 849 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + IA HGRMS E ++ F N +L+ TT+IE GID+ + + +IIE+A+H+GL+Q Sbjct: 850 ARIASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQ 909 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGR+GR ++ LY P L++ RL +++ TE GF IA DL R Sbjct: 910 LYQLRGRIGRSARLAYAYFLYRPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGA 969 Query: 631 GEILGIKQSGM 641 G +LG +Q G Sbjct: 970 GNMLGAQQHGF 980 >gi|261392435|emb|CAX49980.1| transcription-repair coupling factor (TRCF) [Neisseria meningitidis 8013] Length = 1379 Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 153/428 (35%), Positives = 236/428 (55%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Sbjct: 824 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 883 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F ++ + + N +A + ALE +A G I+IG Sbjct: 884 QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 942 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD+I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G Sbjct: 943 THKLVQDNIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 1002 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ + N R Sbjct: 1003 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVDTIE--NMR 1059 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 +E L E + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 1060 GRLETL--LPE---ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 1114 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III A+ FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF Sbjct: 1115 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1174 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K + PDL + G Sbjct: 1175 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1230 Query: 679 QSIRILLY 686 + I L+ Sbjct: 1231 ITTEIKLH 1238 >gi|166364821|ref|YP_001657094.1| transcription-repair coupling factor [Microcystis aeruginosa NIES-843] gi|166087194|dbj|BAG01902.1| transcription-repair coupling factor [Microcystis aeruginosa NIES-843] Length = 1160 Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 145/434 (33%), Positives = 238/434 (54%), Gaps = 22/434 (5%) Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274 K +E T AR R + +L I + R Q + G ++ +++ + P+ PT Sbjct: 560 GKAWEATK-ARVRKSVKKLAVDLINIYAQRAQ---KSGFAYPMDNPWQRELEDSFPYQPT 615 Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-GQAVIMAPIGIL 333 Q AI+D+ +D+ M R++ GDVG GKT VA+ A+ AV G Q ++AP IL Sbjct: 616 ADQLKAIQDVKRDLESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTTGHKQVALLAPTTIL 675 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 QQHY +K+ I V ++ + ++ ++R+ G+ I++GT L ++++ Sbjct: 676 TQQHYHTLKERFAPYPINVGLLNRFRTNSEKKDIVQRLKTGELDIVVGTQLLLSKAVEFK 735 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L L+++DE+ RFGV Q+ K+ + VL +TATPIPRTL ++ G ++S IT P Sbjct: 736 DLGLLVIDEEQRFGVNQKEKIKAFKSNIDVLTLTATPIPRTLYMSLSGVREMSLITTPPP 795 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLH 511 R+PI+T + N D + ++ L G + +++ P+IE E+K + + ++ Sbjct: 796 SRRPIQTHLSSYNS-DVIRTAIRNELDRGGQIFYVVPRIEGIEEKAAAIQGMIP------ 848 Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 + IAI HGRM + + E+ M +F NG +L+ TT++E G+D+ + IIIE+A+ F Sbjct: 849 ---GARIAIGHGRMDEAELETTMLAFNNGEADILVCTTIVESGLDIPRVNTIIIEDAQKF 905 Query: 572 GLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLK---NTEDGFLIAEEDLK 626 GLAQL+QLRGRVGR + LLY L++ + RL ++ G+ +A DL+ Sbjct: 906 GLAQLYQLRGRVGRSGVQAHAWLLYPAKAELTETARERLKAIQEFTQLGSGYQLATRDLE 965 Query: 627 QRKEGEILGIKQSG 640 R G +LG +QSG Sbjct: 966 IRGAGNLLGAEQSG 979 >gi|218768305|ref|YP_002342817.1| transcription-repair coupling factor [Neisseria meningitidis Z2491] gi|121052313|emb|CAM08643.1| transcription-repair coupling factor [Neisseria meningitidis Z2491] Length = 1296 Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 150/428 (35%), Positives = 233/428 (54%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Sbjct: 741 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 800 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F ++ + + N +A + ALE +A G I+IG Sbjct: 801 QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 859 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD I++ + LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G Sbjct: 860 THKLVQDDIKFKNVGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 919 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ Sbjct: 920 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 973 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ ER +L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 974 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 1031 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III A+ FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF Sbjct: 1032 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1091 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K PDL + G Sbjct: 1092 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GHQPDLDAPLG 1147 Query: 679 QSIRILLY 686 + I L+ Sbjct: 1148 ITTEIKLH 1155 >gi|47093156|ref|ZP_00230931.1| transcription-repair coupling factor [Listeria monocytogenes str. 4b H7858] gi|47018463|gb|EAL09221.1| transcription-repair coupling factor [Listeria monocytogenes str. 4b H7858] Length = 1179 Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 143/430 (33%), Positives = 234/430 (54%), Gaps = 21/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW ++ A + +A + L ++ +K G + + ++ ++ P+ T+ Q Sbjct: 573 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSADDEMQREFEEAFPYQETEDQL 630 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I +I +DM + M R+L GDVG GKT VAL A A+ G Q + P ILAQQH+ Sbjct: 631 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E +K+ Q I + +++ + + + L+ + +G +++GTH L ++Y L L+ Sbjct: 691 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 750 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV + K+ Q + VL +TATPIPRTL ++ LG D+S I PA R P+ Sbjct: 751 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T + N + E IER L+ + Y++ ++E S+ ++ + + Sbjct: 811 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------SITQKADEISAMVPD 859 Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A HG+M + + ESV+ SF G +L+ TT+IE G+D+ + + + +++A+ GL+Q Sbjct: 860 ARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 919 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGRVGR I+ +Y L + + RLS +K TE GF IA DL R Sbjct: 920 LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 979 Query: 631 GEILGIKQSG 640 G ILG +Q G Sbjct: 980 GNILGAQQHG 989 >gi|254832465|ref|ZP_05237120.1| transcription-repair coupling factor [Listeria monocytogenes 10403S] Length = 1179 Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 143/430 (33%), Positives = 234/430 (54%), Gaps = 21/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW ++ A + +A + L ++ +K G + + ++ ++ P+ T+ Q Sbjct: 573 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSADDEMQREFEEAFPYQETEDQL 630 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I +I +DM + M R+L GDVG GKT VAL A A+ G Q + P ILAQQH+ Sbjct: 631 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E +K+ Q I + +++ + + + L+ + +G +++GTH L ++Y L L+ Sbjct: 691 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 750 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV + K+ Q + VL +TATPIPRTL ++ LG D+S I PA R P+ Sbjct: 751 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T + N + E IER L+ + Y++ ++E S+ ++ + + Sbjct: 811 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------SITQKADEISAMVPD 859 Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A HG+M + + ESV+ SF G +L+ TT+IE G+D+ + + + +++A+ GL+Q Sbjct: 860 ARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 919 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGRVGR I+ +Y L + + RLS +K TE GF IA DL R Sbjct: 920 LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 979 Query: 631 GEILGIKQSG 640 G ILG +Q G Sbjct: 980 GNILGAQQHG 989 >gi|327182807|gb|AEA31254.1| transcription-repair coupling factor [Lactobacillus amylovorus GRL 1118] Length = 1164 Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 146/431 (33%), Positives = 231/431 (53%), Gaps = 21/431 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ + E +A + L +++ +K G + + + ++ P+ T Q Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQRQFDDAFPYPETPDQL 620 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +IK+I +DM + M R+L GDVG GKT VAL A A++ Q + P ILAQQHY Sbjct: 621 RSIKEIKEDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAIQDNKQVAFLVPTTILAQQHY 680 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I+ ++ + +++ A ++ +E + G+ I++GTH L + + L L+ Sbjct: 681 ETIQDRFKDFPVNTAMLSRFQTPAESKEIIEGLEDGKIDIVVGTHRLLSKDVHFKDLGLL 740 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + KL Q VL +TATPIPRTL ++ +G D+S + P R PI Sbjct: 741 IVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800 Query: 459 KTVI---IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 +T + IP D + +K G + +++ +I S+ VE+ L + Sbjct: 801 QTYVMEQIPSVIKDACLREMK----RGGQVFYLHNRI-----SDIDETVEKLQQLIPN-- 849 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + IA HGRMS E ++ F N +L+ TT+IE GID+ + + +IIE+A+H+GL+Q Sbjct: 850 ARIASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQ 909 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGR+GR ++ LY P L++ RL +++ TE GF IA DL R Sbjct: 910 LYQLRGRIGRSARLAYAYFLYRPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGA 969 Query: 631 GEILGIKQSGM 641 G +LG +Q G Sbjct: 970 GNMLGAQQHGF 980 >gi|218514234|ref|ZP_03511074.1| ATP-dependent DNA helicase protein [Rhizobium etli 8C-3] Length = 167 Score = 224 bits (571), Expect = 4e-56, Method: Composition-based stats. Identities = 107/167 (64%), Positives = 136/167 (81%) Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M +FKNG +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CI Sbjct: 1 MMAFKNGETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCI 60 Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653 LLY PL + + RLS+++ TEDGF IAEEDLK R EGE+LG +QSG P F IA E H Sbjct: 61 LLYKGPLGETGHARLSIMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHA 120 Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700 LLEIARKDA +++ +DP+LTS RGQ+IR LLYL++ +EA +F+RAG Sbjct: 121 DLLEIARKDAAYLIERDPELTSERGQAIRTLLYLFRRDEAIRFLRAG 167 >gi|16802260|ref|NP_463745.1| transcription-repair coupling factor [Listeria monocytogenes EGD-e] gi|224503466|ref|ZP_03671773.1| transcription-repair coupling factor [Listeria monocytogenes FSL R2-561] gi|284803047|ref|YP_003414912.1| transcription-repair coupling factor [Listeria monocytogenes 08-5578] gi|284996188|ref|YP_003417956.1| transcription-repair coupling factor [Listeria monocytogenes 08-5923] gi|16409579|emb|CAD00741.1| transcription-repair coupling factor [Listeria monocytogenes EGD-e] gi|284058609|gb|ADB69550.1| transcription-repair coupling factor [Listeria monocytogenes 08-5578] gi|284061655|gb|ADB72594.1| transcription-repair coupling factor [Listeria monocytogenes 08-5923] Length = 1179 Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 143/430 (33%), Positives = 234/430 (54%), Gaps = 21/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW ++ A + +A + L ++ +K G + + ++ ++ P+ T+ Q Sbjct: 573 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSADDEMQREFEEAFPYQETEDQL 630 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I +I +DM + M R+L GDVG GKT VAL A A+ G Q + P ILAQQH+ Sbjct: 631 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E +K+ Q I + +++ + + + L+ + +G +++GTH L ++Y L L+ Sbjct: 691 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 750 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV + K+ Q + VL +TATPIPRTL ++ LG D+S I PA R P+ Sbjct: 751 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T + N + E IER L+ + Y++ ++E S+ ++ + + Sbjct: 811 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------SITQKADEISAMVPD 859 Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A HG+M + + ESV+ SF G +L+ TT+IE G+D+ + + + +++A+ GL+Q Sbjct: 860 ARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 919 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGRVGR I+ +Y L + + RLS +K TE GF IA DL R Sbjct: 920 LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 979 Query: 631 GEILGIKQSG 640 G ILG +Q G Sbjct: 980 GNILGAQQHG 989 >gi|47096207|ref|ZP_00233806.1| transcription-repair coupling factor [Listeria monocytogenes str. 1/2a F6854] gi|224500335|ref|ZP_03668684.1| transcription-repair coupling factor [Listeria monocytogenes Finland 1988] gi|254901001|ref|ZP_05260925.1| transcription-repair coupling factor [Listeria monocytogenes J0161] gi|254913931|ref|ZP_05263943.1| transcription-repair coupling factor [Listeria monocytogenes J2818] gi|47015455|gb|EAL06389.1| transcription-repair coupling factor [Listeria monocytogenes str. 1/2a F6854] gi|293591949|gb|EFG00284.1| transcription-repair coupling factor [Listeria monocytogenes J2818] Length = 1179 Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 143/430 (33%), Positives = 234/430 (54%), Gaps = 21/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW ++ A + +A + L ++ +K G + + ++ ++ P+ T+ Q Sbjct: 573 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSADDEMQREFEEAFPYQETEDQL 630 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I +I +DM + M R+L GDVG GKT VAL A A+ G Q + P ILAQQH+ Sbjct: 631 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E +K+ Q I + +++ + + + L+ + +G +++GTH L ++Y L L+ Sbjct: 691 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 750 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV + K+ Q + VL +TATPIPRTL ++ LG D+S I PA R P+ Sbjct: 751 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T + N + E IER L+ + Y++ ++E S+ ++ + + Sbjct: 811 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------SITQKADEISAMVPD 859 Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A HG+M + + ESV+ SF G +L+ TT+IE G+D+ + + + +++A+ GL+Q Sbjct: 860 ARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 919 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGRVGR I+ +Y L + + RLS +K TE GF IA DL R Sbjct: 920 LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 979 Query: 631 GEILGIKQSG 640 G ILG +Q G Sbjct: 980 GNILGAQQHG 989 >gi|218283272|ref|ZP_03489327.1| hypothetical protein EUBIFOR_01916 [Eubacterium biforme DSM 3989] gi|218215962|gb|EEC89500.1| hypothetical protein EUBIFOR_01916 [Eubacterium biforme DSM 3989] Length = 1131 Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 136/427 (31%), Positives = 231/427 (54%), Gaps = 15/427 (3%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W + E +A ++ L ++ ++IG + + + ++ + T Q Sbjct: 537 WKKTKEKVSKKVEEIAARLVELYAKRN--EDIGFAFSKDDDLQKEFEDAFEYEATPDQIR 594 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 A ++I ++M + M +L GDVG GKT VA+ A A+ Q ++ P IL+ QHY+ Sbjct: 595 ATEEIKREMEKPKPMDHLLCGDVGFGKTEVAMRAAFKAISNNKQVALLCPTTILSMQHYQ 654 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 K +N + ++ + + + + GQ IIIGTH L S QY L L+I Sbjct: 655 TFVKRFENVGANIRVVNRFVATKEINQIKKELEAGQVDIIIGTHKLLNKSFQYKNLGLLI 714 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 +DE+ RFGV+ + ++ + A VL ++ATPIPRTL ++ +G IS++ P R PI+ Sbjct: 715 IDEEQRFGVEHKERIKEMKNAIDVLSLSATPIPRTLQMSLIGVRTISQLNTPPLHRHPIQ 774 Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519 T ++ NR V E ++ LS G + +++ + SN SV + ++ + +A Sbjct: 775 TYVME-NRKSVVKEIIQRELSRGGQVFYLYNHV-----SNIYSVAKNIQNMFP--DAKVA 826 Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579 + HGRM D E M F+ ++L+ TT+IE G+D+ +A+ +II++A+ FGL+QL+Q+ Sbjct: 827 VAHGRMEKNDIEQTMIDFEQEKYQILVCTTIIETGLDIANANTMIIDDADRFGLSQLYQI 886 Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEIL 634 RGRVGR E+I+ C LL P L++ ++ RL +K + G+ +A DL R G++L Sbjct: 887 RGRVGRREKIAYCYLLVQPQKELTEQAHKRLKAIKEFTSLGSGYKVAMRDLTIRGAGDML 946 Query: 635 GIKQSGM 641 G +Q+G Sbjct: 947 GPQQAGF 953 >gi|254829305|ref|ZP_05233992.1| transcription-repair coupling factor [Listeria monocytogenes FSL N3-165] gi|258601718|gb|EEW15043.1| transcription-repair coupling factor [Listeria monocytogenes FSL N3-165] Length = 1179 Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 143/430 (33%), Positives = 234/430 (54%), Gaps = 21/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW ++ A + +A + L ++ +K G + + ++ ++ P+ T+ Q Sbjct: 573 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSADDEMQREFEEAFPYQETEDQL 630 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I +I +DM + M R+L GDVG GKT VAL A A+ G Q + P ILAQQH+ Sbjct: 631 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E +K+ Q I + +++ + + + L+ + +G +++GTH L ++Y L L+ Sbjct: 691 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 750 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV + K+ Q + VL +TATPIPRTL ++ LG D+S I PA R P+ Sbjct: 751 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T + N + E IER L+ + Y++ ++E S+ ++ + + Sbjct: 811 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------SITQKADEISAMVPD 859 Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A HG+M + + ESV+ SF G +L+ TT+IE G+D+ + + + +++A+ GL+Q Sbjct: 860 ARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 919 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGRVGR I+ +Y L + + RLS +K TE GF IA DL R Sbjct: 920 LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 979 Query: 631 GEILGIKQSG 640 G ILG +Q G Sbjct: 980 GNILGAQQHG 989 >gi|198282679|ref|YP_002219000.1| transcription-repair coupling factor [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247200|gb|ACH82793.1| transcription-repair coupling factor [Acidithiobacillus ferrooxidans ATCC 53993] Length = 1116 Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 137/385 (35%), Positives = 215/385 (55%), Gaps = 19/385 (4%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 + + PF T Q+ AI ++ DM+ + M R++ GDVG GKT VAL A A +G Q Sbjct: 561 EFVSRFPFEETPDQQQAIDAVIADMTSPHPMDRLVCGDVGFGKTEVALRAAFLAAHSGAQ 620 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 ++ P +LAQQHYE + + VE+++ ++ L ++ G+ I+IGTH Sbjct: 621 VAVLVPTTLLAQQHYENFRNRCAGLPLRVEVLSRFQNAKTHKQVLTAVSVGEVDILIGTH 680 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443 L Q + ++ L L+I+DE+HRFGV+Q+ ++ +L +TATPIPRTL L+ G Sbjct: 681 RLLQKDVAFHDLGLLILDEEHRFGVRQKERIKALRAEVDILTLTATPIPRTLNLSLAGLR 740 Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFR 501 D+S I P R+P++T + I VIE + L G + Y++ ++ E+ + R Sbjct: 741 DLSIIATPPQRRQPVRT-FVQIWDDATVIEACQRELHRGGQVYFLHNEVRDIERMAATLR 799 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ + + + HG+M + + E+VM F + +L+ TT+IE GID A+ Sbjct: 800 RLLP---------EARLRVAHGQMPEGELEAVMLDFYHQRFDILLCTTIIESGIDNPHAN 850 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL---SKNSYTRLSVLKNTED-- 616 I+I A+ FGLAQLHQLRGRVGR + + L+ P L S ++ RL +++ ED Sbjct: 851 TILINRADKFGLAQLHQLRGRVGRSHQ-RAYAYLFTPDLRAMSDDARRRLDAIQSLEDLG 909 Query: 617 -GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 910 VGFALASHDLEIRGAGELLGEEQSG 934 >gi|332654772|ref|ZP_08420514.1| transcription-repair coupling factor [Ruminococcaceae bacterium D16] gi|332516115|gb|EGJ45723.1| transcription-repair coupling factor [Ruminococcaceae bacterium D16] Length = 1164 Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 143/428 (33%), Positives = 230/428 (53%), Gaps = 16/428 (3%) Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 +W + R + A +L G I L R+ ++ G + + ++ ++ T Q Sbjct: 572 DWERAKTRAKKAVQDLAKGLIELYAQRQ---RQPGYAFSPDSPWQREFEEQFEYTETDDQ 628 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 I++I +DM M R+L GDVG GKT VA AM V G QA ++ P +LA+QH Sbjct: 629 LRCIQEIKKDMESPVPMDRLLCGDVGYGKTEVAFRAMMKCVLDGKQAAVLVPTTVLARQH 688 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y + Q + +++++ ++ L ++ +G I+IGTH LF +++ L L Sbjct: 689 YLNALRRFQKYPVNIDVVSRFRTPTQMKETLRKVENGGVDILIGTHRLFNKDVKFKDLGL 748 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 ++VDE+ RFGVQ + KL + VL ++ATPIPRTL + G D+S + E PA R P Sbjct: 749 LVVDEEQRFGVQHKEKLKETFRQVDVLTLSATPIPRTLNMAMSGIRDMSTLEEPPADRLP 808 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517 ++T ++ N V + ++ L G + Y+ + + E+ R+ L E T++ Sbjct: 809 VQTYVLEHN-WPVVADAMRRELERGGQVYY----LHNRVETIDRTAARIQQMLGE--TAA 861 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 + + HG+MS + VM +G +L+ TT+IE GID+ +A+ +IIE+A+H GLAQLH Sbjct: 862 VGVAHGKMSQEAIDDVMSRMTDGELNVLVCTTIIETGIDLPNANTLIIEDADHLGLAQLH 921 Query: 578 QLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632 QLRGRVGR + L Y L++ + RL+ ++ + GF IA DL+ R G Sbjct: 922 QLRGRVGRSNRRAYAYLTYRRGKVLTEVAAKRLAAIREFAEFGSGFKIAMRDLEIRGAGN 981 Query: 633 ILGIKQSG 640 +LG +QSG Sbjct: 982 VLGPEQSG 989 >gi|255520464|ref|ZP_05387701.1| transcription-repair coupling factor [Listeria monocytogenes FSL J1-175] Length = 1179 Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 143/430 (33%), Positives = 234/430 (54%), Gaps = 21/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW ++ A + +A + L ++ +K G + + ++ ++ P+ T+ Q Sbjct: 573 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSADDEMQREFEEAFPYQETEDQL 630 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I +I +DM + M R+L GDVG GKT VAL A A+ G Q + P ILAQQH+ Sbjct: 631 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E +K+ Q I + +++ + + + L+ + +G +++GTH L ++Y L L+ Sbjct: 691 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 750 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV + K+ Q + VL +TATPIPRTL ++ LG D+S I PA R P+ Sbjct: 751 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T + N + E IER L+ + Y++ ++E S+ ++ + + Sbjct: 811 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------SITQKADEISAMVPD 859 Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A HG+M + + ESV+ SF G +L+ TT+IE G+D+ + + + +++A+ GL+Q Sbjct: 860 ARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 919 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGRVGR I+ +Y L + + RLS +K TE GF IA DL R Sbjct: 920 LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 979 Query: 631 GEILGIKQSG 640 G ILG +Q G Sbjct: 980 GNILGAQQHG 989 >gi|291296005|ref|YP_003507403.1| transcription factor CarD [Meiothermus ruber DSM 1279] gi|290470964|gb|ADD28383.1| transcription factor CarD [Meiothermus ruber DSM 1279] Length = 987 Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 144/432 (33%), Positives = 236/432 (54%), Gaps = 27/432 (6%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK---ILRNIPFSPTK 275 EW +RE+ A D A ++A L+ K+E P G + + I +N PF T Sbjct: 402 EWKR-SREKAAKD---AEELAQRLLVLHAKRE-ATPGRAFGPLPEWDVLIEQNFPFELTP 456 Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 Q A+++ L+D+ M R++ GDVG GKT VAL A V G Q ++ P +LA+ Sbjct: 457 DQRKALEETLRDLEAPRPMERLISGDVGFGKTEVALRAAFRVVGHGAQVAVLVPTTLLAE 516 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 QH E +K + + V ++ + R+ L + G I+IGTH L +++ L Sbjct: 517 QHKETFQKRLEGLPVRVAALSRFTSERETREVLRGLEQGTVDIVIGTHRLLSPDVRFKDL 576 Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 L++VDE+HRFGV Q+ ++ + A L ++ATPIPR+L +G D+S I P GR Sbjct: 577 GLLVVDEEHRFGVGQKERIRELKEAVDTLYLSATPIPRSLYSALVGLRDLSSIQTPPPGR 636 Query: 456 KPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 KPI+T++ P D + R ++ L G KA+++ ++ +++ R L Sbjct: 637 KPIRTLLAP---YDPALVRQGIMDELERGGKAFYVHDRVA--------TILARRRYLEAL 685 Query: 514 FTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 + ++HG+M + + E M +F G +L+ATT+IE G+D+ +A+ I++E A+ G Sbjct: 686 VPEARFGVVHGQMPEAEVEETMLAFAEGAFDVLLATTIIESGLDIPEANTILVERADKLG 745 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628 LA L+QLRGRVGR ++ + L+HP L++ + RL+ + + D G L+AE+D++ R Sbjct: 746 LAALYQLRGRVGRRDQ-EAWAYLFHPLRLTEGAERRLAAIADLSDLGSGHLLAEKDMEIR 804 Query: 629 KEGEILGIKQSG 640 G +LG +Q G Sbjct: 805 GVGNLLGPEQHG 816 >gi|46906446|ref|YP_012835.1| transcription-repair coupling factor [Listeria monocytogenes serotype 4b str. F2365] gi|226222843|ref|YP_002756950.1| transcription-repair coupling factor [Listeria monocytogenes Clip81459] gi|254825872|ref|ZP_05230873.1| transcription-repair coupling factor [Listeria monocytogenes FSL J1-194] gi|254854444|ref|ZP_05243792.1| transcription-repair coupling factor [Listeria monocytogenes FSL R2-503] gi|254933054|ref|ZP_05266413.1| transcription-repair coupling factor [Listeria monocytogenes HPB2262] gi|300766347|ref|ZP_07076306.1| transcription-repair coupling factor [Listeria monocytogenes FSL N1-017] gi|46879710|gb|AAT03012.1| transcription-repair coupling factor [Listeria monocytogenes serotype 4b str. F2365] gi|225875305|emb|CAS04002.1| transcription-repair coupling factor [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258607844|gb|EEW20452.1| transcription-repair coupling factor [Listeria monocytogenes FSL R2-503] gi|293584612|gb|EFF96644.1| transcription-repair coupling factor [Listeria monocytogenes HPB2262] gi|293595111|gb|EFG02872.1| transcription-repair coupling factor [Listeria monocytogenes FSL J1-194] gi|300512946|gb|EFK40034.1| transcription-repair coupling factor [Listeria monocytogenes FSL N1-017] gi|332310623|gb|EGJ23718.1| Transcription-repair-coupling factor [Listeria monocytogenes str. Scott A] Length = 1179 Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 143/430 (33%), Positives = 234/430 (54%), Gaps = 21/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW ++ A + +A + L ++ +K G + + ++ ++ P+ T+ Q Sbjct: 573 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSADDEMQREFEEAFPYQETEDQL 630 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I +I +DM + M R+L GDVG GKT VAL A A+ G Q + P ILAQQH+ Sbjct: 631 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E +K+ Q I + +++ + + + L+ + +G +++GTH L ++Y L L+ Sbjct: 691 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 750 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV + K+ Q + VL +TATPIPRTL ++ LG D+S I PA R P+ Sbjct: 751 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T + N + E IER L+ + Y++ ++E S+ ++ + + Sbjct: 811 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------SITQKADEISAMVPD 859 Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A HG+M + + ESV+ SF G +L+ TT+IE G+D+ + + + +++A+ GL+Q Sbjct: 860 ARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 919 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGRVGR I+ +Y L + + RLS +K TE GF IA DL R Sbjct: 920 LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 979 Query: 631 GEILGIKQSG 640 G ILG +Q G Sbjct: 980 GNILGAQQHG 989 >gi|325204285|gb|ADY99738.1| transcription-repair coupling factor [Neisseria meningitidis M01-240355] Length = 1374 Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 152/420 (36%), Positives = 234/420 (55%), Gaps = 17/420 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Q ++AP Sbjct: 827 YEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPT 886 Query: 331 GILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +L +QH + F ++ + + N +A + ALE +A G I+IGTH L QD Sbjct: 887 TLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIGTHKLVQDD 945 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G D S IT Sbjct: 946 IKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEGLRDFSLIT 1005 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P+ R +KT + P + V E + L G + +++ +++ + N R +E Sbjct: 1006 TAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVDTIE--NMRGRLETL-- 1060 Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 L E + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ III A+ Sbjct: 1061 LPE---ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRAD 1117 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLK 626 FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF +A +DL+ Sbjct: 1118 KFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLE 1177 Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686 R GEILG QSG + + L+ +L+ A +D K + PDL + G + I L+ Sbjct: 1178 IRGAGEILGEGQSG--EMMQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1233 >gi|229825975|ref|ZP_04452044.1| hypothetical protein GCWU000182_01339 [Abiotrophia defectiva ATCC 49176] gi|229789717|gb|EEP25831.1| hypothetical protein GCWU000182_01339 [Abiotrophia defectiva ATCC 49176] Length = 1184 Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 140/378 (37%), Positives = 211/378 (55%), Gaps = 17/378 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +AIKD+ DM M R++ GDVG GKT VA+ A AV G Q V++ P Sbjct: 626 PYDETDDQLNAIKDVKADMESIKIMDRLVCGDVGFGKTEVAIRAAFKAVSEGKQVVMLVP 685 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILA QHY K QN I VE ++ A +K E++ G I+IGTH + Sbjct: 686 TTILAGQHYTTFSKRMQNFPITVEFLSRFKSAAETKKIKEKLKAGLIDIVIGTHKVLSAE 745 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I+Y L L+I+DE+ RFGV + K+ + VL ++ATPIPRTL ++ +G D+S + Sbjct: 746 IKYKDLGLLIIDEEQRFGVSHKEKIKKLRENVDVLTLSATPIPRTLHMSLVGIRDMSVLE 805 Query: 450 EKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 E P R PI+T ++ + DE+I E + + + Y++ ++ + ER Sbjct: 806 EPPVDRIPIQTYVLEHD--DEIIREAINREIGRNGQVYYVYNRVS--------GIDERAA 855 Query: 509 SLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 L E + ++ HG+M++ + E +M F NG +L++TT+IE G+D+ + + III++ Sbjct: 856 KLAELIPGARVSFAHGQMNERELERIMIEFINGEIDVLVSTTIIETGLDISNVNTIIIDD 915 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622 A+ GL+QL+QLRGRVGR S L+Y L + + RL+ +K D GF IA Sbjct: 916 ADKMGLSQLYQLRGRVGRSSRTSFAFLMYKRDRMLKEIAEKRLAAIKEFTDLGSGFKIAM 975 Query: 623 EDLKQRKEGEILGIKQSG 640 +DL+ R G +LG QSG Sbjct: 976 KDLEIRGAGNLLGKSQSG 993 >gi|168487226|ref|ZP_02711734.1| transcription-repair coupling factor [Streptococcus pneumoniae CDC1087-00] gi|183569911|gb|EDT90439.1| transcription-repair coupling factor [Streptococcus pneumoniae CDC1087-00] Length = 953 Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 130/349 (37%), Positives = 201/349 (57%), Gaps = 18/349 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +I++I +DM M R+L GDVG GKT VA+ A AV Q VI+ P Sbjct: 610 PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY K+ QN + V++++ + + LE++ +GQ I+IGTH + Sbjct: 670 TTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 730 VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R P++T ++ N D VI VL E G + Y++ +++ ++V++ Sbjct: 790 TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQGYYLYNKVD--------TIVQK 837 Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E +SI +HGRMS++ E+ + F G +L+ TT+IE G+D+ +A+ + I Sbjct: 838 VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK 612 ENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K Sbjct: 898 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIK 946 >gi|227824817|ref|ZP_03989649.1| transcription-repair coupling factor [Acidaminococcus sp. D21] gi|226905316|gb|EEH91234.1| transcription-repair coupling factor [Acidaminococcus sp. D21] Length = 1093 Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 140/378 (37%), Positives = 210/378 (55%), Gaps = 17/378 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T Q AI++I DM + M R+L GDVG GKT VA+ A AV G Q +MAP Sbjct: 550 PFEETPDQLKAIQEIKADMEKPVPMERLLCGDVGYGKTEVAIRAAFKAVMDGKQVAVMAP 609 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQH + + +E+++ + ++ L+++A G I+IGTH L Q Sbjct: 610 TTVLAQQHLITFQNRMDAFGVRIEMLSRFRSRKEQKDTLDKLAKGDLDIVIGTHRLIQPD 669 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGV Q+ K+ Q ++ VL ++ATPIPRTL L + D+S I Sbjct: 670 VHFKDLGLLIIDEEQRFGVAQKEKIKQWSSGIDVLTLSATPIPRTLHLALVKGRDMSVIE 729 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R P++T + + + E IER + G + Y++ +IE + R Sbjct: 730 SPPEDRLPVETYVAEYDDGMVKEAIER---EIRRGGRIYYVHNRIE-----ALDRIAHRL 781 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + SI + HGRM++ + E VM F G +L++TT+IE G+DV A+ III+ Sbjct: 782 REMIPGL--SIGVAHGRMTEDELEEVMVGFYQGDYDVLLSTTIIENGLDVPLANTIIIDG 839 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAE 622 AE+FGL+QL+Q+RGRVGR ++ LY LS+ S RL +++ + GF IA Sbjct: 840 AENFGLSQLYQMRGRVGRSSRLAYAYFLYKKDKALSEVSQKRLQAIRDFTELGAGFKIAM 899 Query: 623 EDLKQRKEGEILGIKQSG 640 DL+ R G +LG +Q G Sbjct: 900 RDLEIRGAGNLLGAEQHG 917 >gi|260495382|ref|ZP_05815509.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_33] gi|260197160|gb|EEW94680.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_33] Length = 731 Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 142/375 (37%), Positives = 222/375 (59%), Gaps = 13/375 (3%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF+ T +Q AI+D+ +DM M R++ GDVG GKT VA+ A AV Q +++ P Sbjct: 202 PFTETPAQLKAIEDVKRDMESGKVMDRLICGDVGFGKTEVAIRATFKAVMDSKQVILLVP 261 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHYE + +N + +EI++ + + ++L+RI +G A ++IGTH L D Sbjct: 262 TTVLAEQHYERFSERFKNYPVHIEILSRVQSKKEQVESLKRIENGSADLVIGTHRLLSDD 321 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ + L+I+DE+ +FGV+ + KL + VL +TATPIPRTL L+ LG D+S I Sbjct: 322 IKFKDVGLLIIDEEQKFGVKAKEKLKKIKGDIDVLTLTATPIPRTLNLSLLGIRDLSVID 381 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P GR+ I T I N+ I ++I L + EG + ++I + ++ ES + + E Sbjct: 382 TSPEGRQKIHTEYIDNNKNLIKDII--LSEISREG-QVFYIFNSV-KRIESKVKEIRE-- 435 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 L E+ + IHG+M D + + F+NG +L+ATT+IE GID+ +A+ +IIE Sbjct: 436 -LLPEYI--KVDYIHGQMLPRDIKKNIQEFENGNIDVLVATTIIENGIDIENANTMIIEG 492 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEEDL 625 E GL+Q++QLRGR+GR + S C +L + +KN+ R ++ ++ G +A ED Sbjct: 493 VEKLGLSQVYQLRGRIGRSTKKSYCYMLMNENKTKNAKKREESIREFDNLTGLDLAMEDS 552 Query: 626 KQRKEGEILGIKQSG 640 K R GEILG KQ G Sbjct: 553 KIRGVGEILGEKQHG 567 >gi|254430155|ref|ZP_05043858.1| transcription-repair coupling factor [Cyanobium sp. PCC 7001] gi|197624608|gb|EDY37167.1| transcription-repair coupling factor [Cyanobium sp. PCC 7001] Length = 1189 Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 140/404 (34%), Positives = 226/404 (55%), Gaps = 18/404 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ PT Q AI D+ +DM Q M R++ GDVG GKT VA+ A+ AV AG Q ++ Sbjct: 614 SFPYEPTPDQVKAIADVKRDMEQAQPMDRLVCGDVGFGKTEVAIRAIFKAVTAGRQVAML 673 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 AP +LAQQH+ + + + V ++ A R+ E +A G +++GTH L Sbjct: 674 APTTVLAQQHWRSLSERFAPYPVKVSLLNRFRTAAERKLIQEGLAAGTVDVVVGTHQLLG 733 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 ++ +L L++VDE+ RFGV Q+ K+ VL ++ATPIPRTL ++ G ++S Sbjct: 734 KGTRFKQLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPRTLYMSLSGVREMSL 793 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 IT P R+PIKT + ++ + V ++ L G + +++ P++E +E V ER Sbjct: 794 ITTPPPLRRPIKTHLAALDE-EAVRSAIRQELDRGGQIFYVVPRVEGIEE-----VAERL 847 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + + + HG+M++ + ES M +F G L++ TT++E G+D+ + I+IE+ Sbjct: 848 RQMLPGL--QLLVAHGQMAEGELESAMVAFNAGEADLMLCTTIVESGLDIPRVNTILIED 905 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLK---NTEDGFLIA 621 A FGLAQL+QLRGRVGR I + L++P LS+ + RL ++ G+ +A Sbjct: 906 AHRFGLAQLYQLRGRVGR-SGIQAHAWLFYPGDASLSEAARQRLRAIQEFAQLGSGYQLA 964 Query: 622 EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKD 662 D++ R G +LG++QSG + F + L +SL EI +D Sbjct: 965 MRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQGQD 1008 >gi|218666669|ref|YP_002424872.1| transcription-repair coupling factor [Acidithiobacillus ferrooxidans ATCC 23270] gi|218518882|gb|ACK79468.1| transcription-repair coupling factor [Acidithiobacillus ferrooxidans ATCC 23270] Length = 1149 Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 137/385 (35%), Positives = 215/385 (55%), Gaps = 19/385 (4%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 + + PF T Q+ AI ++ DM+ + M R++ GDVG GKT VAL A A +G Q Sbjct: 594 EFVSRFPFEETPDQQQAIDAVIADMTSPHPMDRLVCGDVGFGKTEVALRAAFLAAHSGAQ 653 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 ++ P +LAQQHYE + + VE+++ ++ L ++ G+ I+IGTH Sbjct: 654 VAVLVPTTLLAQQHYENFRNRCAGLPLRVEVLSRFQNAKTHKQVLTAVSVGEVDILIGTH 713 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443 L Q + ++ L L+I+DE+HRFGV+Q+ ++ +L +TATPIPRTL L+ G Sbjct: 714 RLLQKDVAFHDLGLLILDEEHRFGVRQKERIKALRAEVDILTLTATPIPRTLNLSLAGLR 773 Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFR 501 D+S I P R+P++T + I VIE + L G + Y++ ++ E+ + R Sbjct: 774 DLSIIATPPQRRQPVRT-FVQIWDDATVIEACQRELHRGGQVYFLHNEVRDIERMAATLR 832 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ + + + HG+M + + E+VM F + +L+ TT+IE GID A+ Sbjct: 833 RLLP---------EARLRVAHGQMPEGELEAVMLDFYHQRFDILLCTTIIESGIDNPHAN 883 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL---SKNSYTRLSVLKNTED-- 616 I+I A+ FGLAQLHQLRGRVGR + + L+ P L S ++ RL +++ ED Sbjct: 884 TILINRADKFGLAQLHQLRGRVGRSHQ-RAYAYLFTPDLRAMSDDARRRLDAIQSLEDLG 942 Query: 617 -GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 943 VGFALASHDLEIRGAGELLGEEQSG 967 >gi|240013954|ref|ZP_04720867.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae DGI18] gi|240121523|ref|ZP_04734485.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae PID24-1] Length = 1234 Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 153/451 (33%), Positives = 240/451 (53%), Gaps = 17/451 (3%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + Q + T+ Q +AI +++D++Q M R++ Sbjct: 654 LLNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVC 713 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358 GDVG GKT VAL A AV G Q ++AP +L +QH + F ++ + + N Sbjct: 714 GDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFN 773 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 +A + LE +A G I+IGTH L QD I++ L L+I+DE+HRFGV+Q+ +L + Sbjct: 774 NSKA-TKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLR 832 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 +L MTATPIPRTL + G D S IT P+ R +KT + P + V E + Sbjct: 833 ANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRE 891 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 L G + +++ +++ ++ ER +L + I + HG++ + + E VM F Sbjct: 892 LKRGGQVFFLHNEVD-----TIENMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFL 944 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 +L+ +T+IE GID+ +A+ III A+ FGLAQLHQLRGRVGR + LL Sbjct: 945 QQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPE 1004 Query: 599 PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 ++K++ RL + ++ GF +A +DL+ R GEILG QSG + + L+ + Sbjct: 1005 YITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEM 1062 Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLY 686 L+ A +D K + PDL + G + I L+ Sbjct: 1063 LKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1091 >gi|300362407|ref|ZP_07058583.1| transcription-repair coupling factor [Lactobacillus gasseri JV-V03] gi|300353398|gb|EFJ69270.1| transcription-repair coupling factor [Lactobacillus gasseri JV-V03] Length = 1171 Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 143/431 (33%), Positives = 233/431 (54%), Gaps = 21/431 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW + + E +A + L +++ +K G + + + ++ P+ T Q Sbjct: 563 EWAKTKKRVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKEFEDAFPYPETPDQL 620 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I++I DM M R+L GDVG GKT VAL A A+ G Q +AP ILAQQH+ Sbjct: 621 RSIREIKADMESPKPMDRLLVGDVGFGKTEVALRAAFKAIRDGKQVAFLAPTTILAQQHF 680 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E ++ +N + +++ A ++ +E + +GQ +++GTH L +++ L L+ Sbjct: 681 ETMQDRFKNFPVNCALLSRFQTPAEVKEIIEGVKNGQIDMVVGTHRLLSKDVKFKDLGLL 740 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + +L + VL +TATPIPRTL ++ +G D+S + P R PI Sbjct: 741 IVDEEQRFGVKHKERLKELKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPTNRYPI 800 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 +T + + + V+ + VL E K+ +++ +I+ + VV R L Sbjct: 801 QTYV--MEEMPSVVR--EAVLREMKRNGQVFFLHNRID-----DIDKVVSRLEELIPE-- 849 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + I IHGRMS+ E +M F +L+ TT+IE G+D+ + + +I+ENA+H+GL+Q Sbjct: 850 AKIEYIHGRMSENQMEDIMYRFSRNEFDILVTTTIIETGVDMPNVNTMIVENADHYGLSQ 909 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGR+GR ++ LY P L++ RLS +++ TE GF IA DL R Sbjct: 910 LYQLRGRIGRSARLAYAYFLYQPNKVLTEIGEKRLSAIRDFTELGSGFKIAMRDLSIRGA 969 Query: 631 GEILGIKQSGM 641 G +LG +Q G Sbjct: 970 GNMLGKQQHGF 980 >gi|257455867|ref|ZP_05621086.1| transcription-repair coupling factor [Enhydrobacter aerosaccus SK60] gi|257446715|gb|EEV21739.1| transcription-repair coupling factor [Enhydrobacter aerosaccus SK60] Length = 1182 Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 152/433 (35%), Positives = 233/433 (53%), Gaps = 27/433 (6%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQ 277 +W + L+ +A ++ + R+ K I PI+ +I + + F T Q Sbjct: 583 KWDKAKAKALSQIHDVAAELLNVQARRDAKVGINFPID---QIQYDLFASQFAFEETPDQ 639 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 +AI+ + DM Q M R++ GDVG GKT VA+ A AV+AG Q ++ P +LA QH Sbjct: 640 ANAIEAVKFDMKQNKPMDRLVCGDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQH 699 Query: 338 YE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 + F+ ++ + I +E ++ + K L +A+GQ I+IGTH + Q+ +++ L Sbjct: 700 EDNFLDRFA-DWPIRIESLSRFGTKKQHDKILADLANGQVDIVIGTHRILQEDVKFANLG 758 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 L+IVDE+HRFGV+ + ++ + VL MTATPIPRTL + G ++S I PA R Sbjct: 759 LMIVDEEHRFGVRDKERIKAMQSDVDVLSMTATPIPRTLNMALSGMRNMSIIATPPARRL 818 Query: 457 PIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHE 512 IKT ++P N + E I R L G + + + + E+ R +V Sbjct: 819 AIKTFVMPKSDNLLKEAILR---ELLRGGQVFLLHNDVASIERMAETVRELVPE------ 869 Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 S +A+ HG+M + + E +M SF + +L+ TT+IE GID+ +A+ III A+ FG Sbjct: 870 ---SRVAVAHGQMKERELEQIMQSFYHKKHNVLVCTTIIETGIDIPNANTIIINRADKFG 926 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627 LAQLHQLRGRVGR + C LL L+ ++ RL + GF++A EDL+ Sbjct: 927 LAQLHQLRGRVGRSHHQAYCYLLVPSIKGLTSDAQKRLDAISRANTLGAGFMLASEDLEI 986 Query: 628 RKEGEILGIKQSG 640 R GE+LG QSG Sbjct: 987 RGAGELLGKNQSG 999 >gi|322377900|ref|ZP_08052388.1| transcription-repair coupling factor [Streptococcus sp. M334] gi|321281076|gb|EFX58088.1| transcription-repair coupling factor [Streptococcus sp. M334] Length = 1169 Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 149/405 (36%), Positives = 229/405 (56%), Gaps = 25/405 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q ++++I +DM M R+L GDVG GKT VA+ A AV Q V++ P Sbjct: 610 PYVETDDQLRSVEEIKRDMQDSQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLVP 669 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY K+ QN + +++++ + + + LE++ +GQ I+IGTH + Sbjct: 670 TTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTETLEKLKNGQVDILIGTHRVLSKD 729 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 730 VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R P++T ++ N D VI VL E G + Y++ +++ ++ ++ Sbjct: 790 TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIDQK 837 Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E +SI +HG+MS+I E+ + F G +L+ TT+IE G+D+ +A+ + I Sbjct: 838 VSELQELIPEASIGYVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620 ENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF I Sbjct: 898 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 A DL R G +LG QSG + EL+ LLE IAR++ Sbjct: 958 AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIARRNG 1000 >gi|289433569|ref|YP_003463441.1| transcription-repair coupling factor [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169813|emb|CBH26351.1| transcription-repair coupling factor [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 1178 Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 144/430 (33%), Positives = 234/430 (54%), Gaps = 21/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW ++ A + +A + L ++ +K G + + ++ ++ P+ T Q Sbjct: 573 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSPDEEMQREFEDAFPYQETDDQL 630 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I +I +DM + M R+L GDVG GKT VAL A A+ G Q + P ILAQQH+ Sbjct: 631 RSIAEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E +K+ Q I + +++ + + + L+ + G I++GTH L ++Y+ L L+ Sbjct: 691 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKSGTVDIVVGTHRLLSKDVEYHDLGLL 750 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV + K+ Q + VL +TATPIPRTL ++ LG D+S I PA R P+ Sbjct: 751 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T + N + E IER L+ + Y++ ++E ++ ++ + + Sbjct: 811 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------TITQKADEISAMVPD 859 Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +AI HG+M + + ESV+ SF G +L+ TT+IE G+D+ + + + +++A+ GL+Q Sbjct: 860 ARVAIAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 919 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGRVGR I+ +Y L + + RLS +K TE GF IA DL R Sbjct: 920 LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 979 Query: 631 GEILGIKQSG 640 G ILG +Q G Sbjct: 980 GNILGAQQHG 989 >gi|254422402|ref|ZP_05036120.1| transcription-repair coupling factor [Synechococcus sp. PCC 7335] gi|196189891|gb|EDX84855.1| transcription-repair coupling factor [Synechococcus sp. PCC 7335] Length = 1177 Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 135/385 (35%), Positives = 215/385 (55%), Gaps = 17/385 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q++ + P++PT Q A +D+ +DM M R++ GDVG GKT VAL A+ AV AG Sbjct: 619 QELEDSFPYNPTPDQLKATQDVKRDMESDRPMDRLVCGDVGFGKTEVALRAVFKAVTAGK 678 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++AP IL QQHY +K+ I + ++ R+ L R+ G+ +++GT Sbjct: 679 QVALLAPTTILTQQHYHTLKERFAPYPIQIGLLNRFRTAKERKDILLRLISGELDVVVGT 738 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L ++++ L L++VDE+ RFGV Q+ K+ VL ++ATPIPRTL + G Sbjct: 739 HQLLGKTVKFKDLGLLVVDEEQRFGVNQKEKIKAMKAQVDVLTLSATPIPRTLYMALSGV 798 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNF 500 ++S IT P R+PIKT + P + ++V ++ L G + +++ P++E E+ Sbjct: 799 REMSLITTPPPSRRPIKTHLSPYDP-EKVRTAIRQELDRGGQIFYVVPRVEGIEEVAGRI 857 Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560 R V +AI HG+M + + E+ M +F NG L++ TT+IE G+D+ Sbjct: 858 REAVPGVR---------LAIAHGQMPEGELEATMLTFSNGDADLMVCTTIIESGLDIPRV 908 Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLK---NTE 615 + IIIE+++ FGL+QL+QLRGRVGR + LL+ LS + RL ++ Sbjct: 909 NTIIIEDSQKFGLSQLYQLRGRVGRSGIQAHAWLLFPKQNQLSDKARKRLRAIQEFTQLG 968 Query: 616 DGFLIAEEDLKQRKEGEILGIKQSG 640 G+ +A D++ R G +LG +QSG Sbjct: 969 SGYQLAMRDMEIRGIGNLLGAQQSG 993 >gi|172060905|ref|YP_001808557.1| transcription-repair coupling factor [Burkholderia ambifaria MC40-6] gi|171993422|gb|ACB64341.1| transcription-repair coupling factor [Burkholderia ambifaria MC40-6] Length = 1156 Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 159/431 (36%), Positives = 232/431 (53%), Gaps = 23/431 (5%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q Sbjct: 596 KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 655 Query: 324 AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 +++P +LA+QH + F+ ++ + IVE+ + A+ +I G I+IGT Sbjct: 656 VALLSPTTLLAEQHTQTFVDRFAEWPVRIVELSRFKTTK-EVNAAIAQINEGTVDIVIGT 714 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G Sbjct: 715 HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 774 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNF 500 D S I P R IKT + R +E + R ++ L G + Y++ ++E + N Sbjct: 775 RDFSVIATAPQKRLAIKTFV---RREEESVIREAMLRELKRGGQVYFLHNEVETIE--NR 829 Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560 R+++E + I I HG+M + + E VM F +L+ TT+IE GIDV A Sbjct: 830 RAMLEELVP-----EARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSA 884 Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616 + II+ A+ FGLAQLHQLRGRVGR + LL H P L+K + RL ++ E+ Sbjct: 885 NTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEELG 944 Query: 617 -GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 GF +A DL+ R GE+LG KQSG + Q L+ +L A K K+ ++PDLT+ Sbjct: 945 SGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDLTA 1000 Query: 676 VRGQSIRILLY 686 + I L+ Sbjct: 1001 PLAATTEINLH 1011 >gi|194098853|ref|YP_002001917.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae NCCP11945] gi|240115873|ref|ZP_04729935.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae PID18] gi|193934143|gb|ACF29967.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae NCCP11945] Length = 1234 Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 153/451 (33%), Positives = 240/451 (53%), Gaps = 17/451 (3%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + Q + T+ Q +AI +++D++Q M R++ Sbjct: 654 LLNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVC 713 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358 GDVG GKT VAL A AV G Q ++AP +L +QH + F ++ + + N Sbjct: 714 GDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFN 773 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 +A + LE +A G I+IGTH L QD I++ L L+I+DE+HRFGV+Q+ +L + Sbjct: 774 NSKA-TKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLR 832 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 +L MTATPIPRTL + G D S IT P+ R +KT + P + V E + Sbjct: 833 ANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRE 891 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 L G + +++ +++ ++ ER +L + I + HG++ + + E VM F Sbjct: 892 LKRGGQVFFLHNEVD-----TIENMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFL 944 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 +L+ +T+IE GID+ +A+ III A+ FGLAQLHQLRGRVGR + LL Sbjct: 945 QQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPE 1004 Query: 599 PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 ++K++ RL + ++ GF +A +DL+ R GEILG QSG + + L+ + Sbjct: 1005 YITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEM 1062 Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLY 686 L+ A +D K + PDL + G + I L+ Sbjct: 1063 LKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1091 >gi|59801051|ref|YP_207763.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae FA 1090] gi|59717946|gb|AAW89351.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae FA 1090] Length = 1234 Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 153/451 (33%), Positives = 240/451 (53%), Gaps = 17/451 (3%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + Q + T+ Q +AI +++D++Q M R++ Sbjct: 654 LLNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVC 713 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358 GDVG GKT VAL A AV G Q ++AP +L +QH + F ++ + + N Sbjct: 714 GDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFN 773 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 +A + LE +A G I+IGTH L QD I++ L L+I+DE+HRFGV+Q+ +L + Sbjct: 774 NSKA-TKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLR 832 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 +L MTATPIPRTL + G D S IT P+ R +KT + P + V E + Sbjct: 833 ANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRE 891 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 L G + +++ +++ ++ ER +L + I + HG++ + + E VM F Sbjct: 892 LKRGGQVFFLHNEVD-----TIENMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFL 944 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 +L+ +T+IE GID+ +A+ III A+ FGLAQLHQLRGRVGR + LL Sbjct: 945 QQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPE 1004 Query: 599 PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 ++K++ RL + ++ GF +A +DL+ R GEILG QSG + + L+ + Sbjct: 1005 YITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEM 1062 Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLY 686 L+ A +D K + PDL + G + I L+ Sbjct: 1063 LKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1091 >gi|308271395|emb|CBX28003.1| hypothetical protein N47_G33270 [uncultured Desulfobacterium sp.] Length = 1171 Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 141/379 (37%), Positives = 211/379 (55%), Gaps = 21/379 (5%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T Q SAI D++ DM M R++ GDVG GKT VAL A A+ Q ++ P Sbjct: 626 YEETPDQLSAIDDVMSDMENNTPMDRLVCGDVGYGKTEVALRASFLAINCAKQVAVLVPT 685 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA+QH+ K + + +E ++ +++ + I+ G+A I+IGTH L Q + Sbjct: 686 TVLAEQHFSTFKARFEKYPVNIECLSRFRSIKEQKRIISDISSGKADIVIGTHRLLQKDV 745 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + L L+++DE+HRFGV+ + KL + VL +TATPIPRTL ++ G DIS I+ Sbjct: 746 IFKDLGLIVLDEEHRFGVKHKEKLKKLRNNVDVLALTATPIPRTLHMSLTGIRDISVIST 805 Query: 451 KPAGRKPIKTVIIPINRIDEVI--ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R +++I ++ DE + E ++ L+ + Y++ +N ++ + N Sbjct: 806 PPEHR---QSIITYVSEFDEALIAEAVRKELARKGQIYFV--------HNNIFTIDKIAN 854 Query: 509 SLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 LHE I I HGR+S+ + ESVM F N +L+ TT+IE G+D+ A+ III Sbjct: 855 KLHELIPEIKIGIGHGRLSENELESVMLKFVNKDIDMLVCTTIIESGLDIPSANTIIINR 914 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTED---GFLIA 621 A+ FGLAQ++QLRGRVGR +E + L+ P L K++ RL VL D GF IA Sbjct: 915 ADRFGLAQIYQLRGRVGRSDE-QAYAYLFIPKDSILGKDAQKRLKVLMEHSDLGSGFQIA 973 Query: 622 EEDLKQRKEGEILGIKQSG 640 DL+ R G ILG QSG Sbjct: 974 MSDLRIRGGGTILGASQSG 992 >gi|260890929|ref|ZP_05902192.1| transcription-repair coupling factor [Leptotrichia hofstadii F0254] gi|260859482|gb|EEX73982.1| transcription-repair coupling factor [Leptotrichia hofstadii F0254] Length = 1069 Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 140/381 (36%), Positives = 213/381 (55%), Gaps = 20/381 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 N PF T+ Q +AI D+ +DM M RI+ GDVG GKT VA+ A A++ G Q V++ Sbjct: 526 NFPFEETEDQRNAINDVKKDMESPQIMDRIVCGDVGYGKTEVAMRAAFKAIDNGKQVVMV 585 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 AP +LA+QH+E K+ +N I +E ++ + ++ + L+ + G ++IGTH L Sbjct: 586 APTTVLAEQHFERFKRRFENYPITIENLS-RLTKSKSKDILKNLKSGIIDLVIGTHRLLS 644 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D +Q+ L L+I+DE+ +FGV+ + KL + VL +TATPIPRTL L LG +IS Sbjct: 645 DDVQFKNLGLLIIDEEQKFGVKAKEKLKSQREKLDVLTLTATPIPRTLNLAMLGIREISI 704 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R PI T I+ DE ++ ++ LS + ++I + +++ E Sbjct: 705 IDTPPTNRLPIITEILD---WDEETIKMAILRELSRDGQVFYIYNDV--------KNMKE 753 Query: 506 RFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + L E + I I+G++ + + + F+NG +LIA+T+IE GIDV +A+ I Sbjct: 754 KLKELKEMLPDFVKIEFINGQLPPKEIKDKLLRFENGQFDILIASTIIENGIDVGNANTI 813 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE----DGFL 619 +IEN GL+Q++QL+GRVGR C LL ++K + + E GF Sbjct: 814 LIENFTGLGLSQVYQLKGRVGRSNRQGYCYLLKTRNITKQGRQKEESMLKVEGIKSGGFQ 873 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 I+ EDLK R GEILG KQ G Sbjct: 874 ISMEDLKIRGAGEILGDKQHG 894 >gi|294141531|ref|YP_003557509.1| transcription-repair coupling factor [Shewanella violacea DSS12] gi|293328000|dbj|BAJ02731.1| transcription-repair coupling factor [Shewanella violacea DSS12] Length = 1157 Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 148/415 (35%), Positives = 229/415 (55%), Gaps = 21/415 (5%) Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 +A ++ + R+Q + I+ E + AQ + PF T QE++I +L DM Sbjct: 572 VAAELLDVYARRQSRPGSACKID-EQEYAQ-FANSFPFEETVDQETSINAVLTDMCSPIA 629 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R++ GDVG GKT VA+ A AV G Q I+ P +LAQQH+E K + + +E Sbjct: 630 MDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVAILVPTTLLAQQHFENFKDRFADWPVKIE 689 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 +I+ ++ ++ ++ G+ IIIGTH L + L L+++DE+HRFGV+Q+ + Sbjct: 690 VISRFKTAKEQKLIMDELSKGKVDIIIGTHKLLHSEGDFENLGLLVIDEEHRFGVRQKEQ 749 Query: 414 LTQKATAPHV--LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471 + KA HV L +TATPIPRTL + G D+S I PA R +KT I + + Sbjct: 750 I--KALRAHVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFIREYDTT-TI 806 Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDK 530 E L + G + Y++ ++E ++ +R + E + + HG+M + D Sbjct: 807 REALLREILRGGQVYFLHNKVE--------TIEKRAKEISELLPEARVVTAHGQMRERDL 858 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 E VM F + +L+ TT+IE GIDV A+ I+IE A++FGLAQLHQLRGRVGR + Sbjct: 859 ERVMSDFYHQKFNVLVCTTIIETGIDVPSANTIVIERADNFGLAQLHQLRGRVGRSHHQA 918 Query: 591 SCILLY-HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 ++ HP ++ ++ RL + ED GF++A +DL+ R GE+LG +QSG Sbjct: 919 YAYMMTPHPKSITSDARKRLEAIGALEDLGAGFMLATQDLEIRGAGELLGDEQSG 973 >gi|257062106|ref|YP_003139994.1| transcription-repair coupling factor [Cyanothece sp. PCC 8802] gi|256592272|gb|ACV03159.1| transcription-repair coupling factor [Cyanothece sp. PCC 8802] Length = 1158 Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 137/380 (36%), Positives = 213/380 (56%), Gaps = 16/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-GQAVI 326 + P+ PT Q A++D+ D+ M R++ GDVG GKT VA+ A+ AV +G Q + Sbjct: 604 SFPYQPTPDQLKAVQDVKMDLESDRPMDRLVCGDVGFGKTEVAVRAIFKAVTSGHKQVAL 663 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 +AP IL QQHY +K+ I + ++ + ++ ++R+A G+ I++GTH L Sbjct: 664 LAPTTILTQQHYHTLKERFAPYPINIGLLNRFRTTSEKKDIVQRLATGELDIVVGTHQLL 723 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 S+++ L L+++DE+ RFGV Q+ K+ T VL +TATPIPRTL ++ G +IS Sbjct: 724 GQSVKFKNLGLLVIDEEQRFGVNQKEKIKALKTEVDVLTLTATPIPRTLYMSLSGIREIS 783 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 IT P R+PIKT + N D V ++ L G + +++ P++E + E Sbjct: 784 LITTPPPSRRPIKTHLSSYNP-DVVRTAIRNELDRGGQIFYVVPRVE--------GIEEV 834 Query: 507 FNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + + S+ I I HG+M D E M F NG +L+ TT+IE G+D+ + II+ Sbjct: 835 AGQIQQMVPSARIVIAHGQMDVNDLEMTMLGFNNGEADILVCTTIIESGLDIPRVNTIIV 894 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLI 620 E+A+ FGL+QL+QLRGRVGR + LLY LS+ + RL L+ G+ + Sbjct: 895 EDAQKFGLSQLYQLRGRVGRSGIQAHAWLLYPNKGQLSETARQRLRALQEFSQLGSGYQL 954 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A D++ R G +LG +QSG Sbjct: 955 ATRDMEIRGVGNLLGAEQSG 974 >gi|108762520|ref|YP_629274.1| transcription-repair coupling factor [Myxococcus xanthus DK 1622] gi|108466400|gb|ABF91585.1| transcription-repair coupling factor [Myxococcus xanthus DK 1622] Length = 1188 Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 141/382 (36%), Positives = 215/382 (56%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + F T Q AI+D+L DM + M R++ GDVG GKT VA+ A A Q ++ Sbjct: 638 DFEFEETPDQAKAIEDVLADMQKPEPMDRLVCGDVGYGKTEVAMRAAFKAALDRKQVAVL 697 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+ KK + + VE+I+G R+ L+R G+ I+IGTH L Sbjct: 698 VPTTVLAQQHFLSFKKRFADYPVTVEVISGLKKAPEVREILKRAKEGKVDILIGTHKLLG 757 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + + +L L+IVDE+ RFGV+Q+ L + + VL +TATPIPRTL ++ G D+S Sbjct: 758 GEVAFKELGLMIVDEEQRFGVKQKESLKKWRSQIDVLTLTATPIPRTLHMSMSGVRDMSI 817 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSV 503 I P R+ I+T ++ + E IER ++ G + +++ ++E E+ R++ Sbjct: 818 IATPPQDRRAIRTFVMKYEDTVVKEAIER---EVARGGQVFFVHNRVESLPSIETQLRAL 874 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 V + SI + HG+M + E VM +F ++L+ T++IE GID+ A+ + Sbjct: 875 VPQV---------SIGVAHGQMGEGQLEKVMLAFTEKKYQVLLCTSIIESGIDISSANTM 925 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GF 618 I+ A+ FGLAQL+QLRGRVGR +E + LL ++K++ RL VL+N + GF Sbjct: 926 IVNRADQFGLAQLYQLRGRVGRSKERAYAYLLVPSRRAVTKDAQRRLEVLQNFTELGAGF 985 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 IA DL+ R G +LG KQSG Sbjct: 986 SIASHDLEIRGAGNLLGDKQSG 1007 >gi|268684509|ref|ZP_06151371.1| transcription-repair coupling factor [Neisseria gonorrhoeae SK-92-679] gi|268624793|gb|EEZ57193.1| transcription-repair coupling factor [Neisseria gonorrhoeae SK-92-679] Length = 1241 Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 153/451 (33%), Positives = 240/451 (53%), Gaps = 17/451 (3%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + Q + T+ Q +AI +++D++Q M R++ Sbjct: 661 LLNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVC 720 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358 GDVG GKT VAL A AV G Q ++AP +L +QH + F ++ + + N Sbjct: 721 GDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFN 780 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 +A + LE +A G I+IGTH L QD I++ L L+I+DE+HRFGV+Q+ +L + Sbjct: 781 NSKA-TKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKERLKRLR 839 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 +L MTATPIPRTL + G D S IT P+ R +KT + P + V E + Sbjct: 840 ANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRE 898 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 L G + +++ +++ ++ ER +L + I + HG++ + + E VM F Sbjct: 899 LKRGGQVFFLHNEVD-----TIENMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFL 951 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 +L+ +T+IE GID+ +A+ III A+ FGLAQLHQLRGRVGR + LL Sbjct: 952 QQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPE 1011 Query: 599 PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 ++K++ RL + ++ GF +A +DL+ R GEILG QSG + + L+ + Sbjct: 1012 YITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEM 1069 Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLY 686 L+ A +D K + PDL + G + I L+ Sbjct: 1070 LKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1098 >gi|170289131|ref|YP_001739369.1| DEAD/DEAH box helicase domain-containing protein [Thermotoga sp. RQ2] gi|170176634|gb|ACB09686.1| DEAD/DEAH box helicase domain protein [Thermotoga sp. RQ2] Length = 893 Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 133/409 (32%), Positives = 236/409 (57%), Gaps = 17/409 (4%) Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296 ++ L M++Q + + +P + E + +K + P+ T Q+ +I++++ D++ + M R Sbjct: 338 ELVELYMKRQEAQGLSLPGDPE--LEEKFAESFPYIETPDQQQSIEEVMSDLASEKPMDR 395 Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 +L GD G GKT VAL A AV +G Q ++ P +LA+QHYE K+ + + VE++ Sbjct: 396 LLCGDAGVGKTEVALRAAFRAVVSGKQVAVLVPTTVLARQHYENFKERMETFGVKVELLD 455 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 + +++ +E++ G+ IIIGTH+L + I++ L LVI+DE+ +FGV+Q+ + + Sbjct: 456 SSRTAREKKEIIEKLKKGEIDIIIGTHSLLNERIEFSDLGLVIIDEEQKFGVEQKERFKK 515 Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 + +VL ++ATPIPRTL + G D S I P GRKP+ + + D++++ Sbjct: 516 LRLSVNVLTLSATPIPRTLHMALSGMKDFSVINSPPPGRKPVYVYVAEYS--DDLVKGAV 573 Query: 477 V-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534 + ++ G + ++ ++EE + E F L F IA+ HG+MS E ++ Sbjct: 574 IREINRGGQVIYVHNRVEE--------LPEVFEKLKRMFPELEIAVAHGKMSRRAMERIV 625 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F G +L+ TT+IE G+D+ +A+ +I+++A +GL+QL+QLRGRVGR + + Sbjct: 626 HEFYRGNIDVLLCTTIIENGVDIPNANTLIVDDAHRYGLSQLYQLRGRVGRSDRRAFAYF 685 Query: 595 LYHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640 LY +++ RL VLK+ G IA +D++ R G++LG++Q G Sbjct: 686 LYPKGTPRSALERLKVLKSYTGFGSGLQIALKDMELRGVGDVLGLEQHG 734 >gi|30248039|ref|NP_840109.1| mfd: transcription-repair coupling factor [Nitrosomonas europaea ATCC 19718] gi|30179924|emb|CAD83919.1| mfd: transcription-repair coupling factor [Nitrosomonas europaea ATCC 19718] Length = 1154 Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 162/430 (37%), Positives = 231/430 (53%), Gaps = 28/430 (6%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q +AI ++QDM M R++ GDVG GKT VAL A AV G Q ++ P Sbjct: 605 FEETPDQATAINAVIQDMVSGKSMDRLICGDVGFGKTEVALRAAFVAVTDGKQVAVLVPT 664 Query: 331 GILAQQHYE-FIKKYTQ-NTQIIVEIITGNMPQAHRRKA--LERIAHGQAHIIIGTHALF 386 +LA+QHY+ F ++ Q V+I + ++ R +A L+ +A G IIIGTH L Sbjct: 665 TLLAEQHYQNFSDRFGLIADQWPVKIAELSRFRSAREQAEALQSLAQGTTDIIIGTHKLI 724 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 QD +++ L LVI+DE+HRFGV+Q+ +L + VL +TATPIPRTL ++ G D S Sbjct: 725 QDKVKFKNLGLVIIDEEHRFGVRQKEQLKKLRAEVDVLTLTATPIPRTLAMSLEGLRDFS 784 Query: 447 KITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504 I P R I+T + P + I E R L G + Y++ ++ S +++ Sbjct: 785 VIATAPQRRLAIRTFVHPYSEGIIREACLR---ELKRGGQIYFLYNEV-----STIQNMY 836 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 R +L + I I HG+M + + E VM F LL+ TT+IE GID+ A+ II Sbjct: 837 TRLTTLLPE--ARINIAHGQMRESELEHVMRDFYQQRFNLLLCTTIIETGIDIPTANTII 894 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTED---GF 618 I A+ FGLAQLHQLRGRVGR + LL P L+ + RL ++ E+ GF Sbjct: 895 IHRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPEKAALTTQATRRLEAIQAMEELGSGF 954 Query: 619 LIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677 +A DL+ R G +LG QSG M + + L+ SLL+ A K K +PD+ Sbjct: 955 YLAMHDLEIRGAGAVLGDSQSGEMQEVGFS---LYSSLLDAAIKSLK--AGHEPDMQQPL 1009 Query: 678 GQSIRILLYL 687 G S I L++ Sbjct: 1010 GVSTEIRLHV 1019 >gi|325955975|ref|YP_004286585.1| transcription-repair coupling factor [Lactobacillus acidophilus 30SC] gi|325332540|gb|ADZ06448.1| transcription-repair coupling factor [Lactobacillus acidophilus 30SC] Length = 1164 Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 145/431 (33%), Positives = 231/431 (53%), Gaps = 21/431 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ + E +A + L +++ +K G + + + ++ P+ T Q Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQRQFDDAFPYPETPDQL 620 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +IK+I +DM + M R+L GDVG GKT VAL A A++ Q + P ILAQQHY Sbjct: 621 RSIKEIKEDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAIQDNKQVAFLVPTTILAQQHY 680 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I+ ++ + +++ A ++ +E + G+ +++GTH L + + L L+ Sbjct: 681 ETIQDRFKDFPVNTAMLSRFQTPAESKEIIEGLEDGKIDLVVGTHRLLSKDVHFKDLGLL 740 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + KL Q VL +TATPIPRTL ++ +G D+S + P R PI Sbjct: 741 IVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800 Query: 459 KTVI---IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 +T + IP D + +K G + +++ +I S+ VE+ L + Sbjct: 801 QTYVMEQIPSVIKDACLREMK----RGGQVFYLHNRI-----SDIDETVEKLQQLIPN-- 849 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + IA HGRMS E ++ F N +L+ TT+IE GID+ + + +IIE+A+H+GL+Q Sbjct: 850 ARIASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQ 909 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGR+GR ++ LY P L++ RL +++ TE GF IA DL R Sbjct: 910 LYQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGA 969 Query: 631 GEILGIKQSGM 641 G +LG +Q G Sbjct: 970 GNMLGAQQHGF 980 >gi|270291823|ref|ZP_06198038.1| transcription-repair coupling factor [Streptococcus sp. M143] gi|270279351|gb|EFA25193.1| transcription-repair coupling factor [Streptococcus sp. M143] Length = 1167 Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 149/406 (36%), Positives = 230/406 (56%), Gaps = 25/406 (6%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 P+ T Q +I++I +DM + M R+L GDVG GKT VA+ A AV Q V++ Sbjct: 609 FPYVETDDQLRSIEEIKRDMQDSHPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLV 668 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQHY K+ QN + +++++ + + + LE++ +GQ I+IGTH + Sbjct: 669 PTTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQAETLEKLKNGQVDILIGTHRVLSK 728 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 729 DVVFSDLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVI 788 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505 P R P++T ++ N D VI VL E G + Y++ +++ ++ + Sbjct: 789 ETPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIDQ 836 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + + L E +SI +HG+MS+I E+ + F G +L+ TT+IE G+D+ +A+ + Sbjct: 837 KVSELQELIPEASIGYVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLF 896 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFL 619 IENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF Sbjct: 897 IENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFK 956 Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 IA DL R G +LG QSG + EL+ LLE IA+++ Sbjct: 957 IAMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000 >gi|240016396|ref|ZP_04722936.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae FA6140] gi|240125910|ref|ZP_04738796.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae SK-92-679] Length = 1234 Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 153/451 (33%), Positives = 240/451 (53%), Gaps = 17/451 (3%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + Q + T+ Q +AI +++D++Q M R++ Sbjct: 654 LLNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVC 713 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358 GDVG GKT VAL A AV G Q ++AP +L +QH + F ++ + + N Sbjct: 714 GDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFN 773 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 +A + LE +A G I+IGTH L QD I++ L L+I+DE+HRFGV+Q+ +L + Sbjct: 774 NSKA-TKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKERLKRLR 832 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 +L MTATPIPRTL + G D S IT P+ R +KT + P + V E + Sbjct: 833 ANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRE 891 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 L G + +++ +++ ++ ER +L + I + HG++ + + E VM F Sbjct: 892 LKRGGQVFFLHNEVD-----TIENMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFL 944 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 +L+ +T+IE GID+ +A+ III A+ FGLAQLHQLRGRVGR + LL Sbjct: 945 QQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPE 1004 Query: 599 PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 ++K++ RL + ++ GF +A +DL+ R GEILG QSG + + L+ + Sbjct: 1005 YITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEM 1062 Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLY 686 L+ A +D K + PDL + G + I L+ Sbjct: 1063 LKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1091 >gi|255025717|ref|ZP_05297703.1| transcription-repair coupling factor [Listeria monocytogenes FSL J2-003] Length = 626 Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 143/430 (33%), Positives = 234/430 (54%), Gaps = 21/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW ++ A + +A + L ++ +K G + + ++ ++ P+ T+ Q Sbjct: 20 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSADDEMQREFEEAFPYQETEDQL 77 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I +I +DM + M R+L GDVG GKT VAL A A+ G Q + P ILAQQH+ Sbjct: 78 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 137 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E +K+ Q I + +++ + + + L+ + +G +++GTH L ++Y L L+ Sbjct: 138 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 197 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV + K+ Q + VL +TATPIPRTL ++ LG D+S I PA R P+ Sbjct: 198 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 257 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T + N + E IER L+ + Y++ ++E S+ ++ + + Sbjct: 258 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------SITQKADEISAMVPD 306 Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A HG+M + + ESV+ SF G +L+ TT+IE G+D+ + + + +++A+ GL+Q Sbjct: 307 ARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 366 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGRVGR I+ +Y L + + RLS +K TE GF IA DL R Sbjct: 367 LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 426 Query: 631 GEILGIKQSG 640 G ILG +Q G Sbjct: 427 GNILGAQQHG 436 >gi|268599202|ref|ZP_06133369.1| transcription-repair coupling factor [Neisseria gonorrhoeae MS11] gi|268603888|ref|ZP_06138055.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID1] gi|268682351|ref|ZP_06149213.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID332] gi|268583333|gb|EEZ48009.1| transcription-repair coupling factor [Neisseria gonorrhoeae MS11] gi|268588019|gb|EEZ52695.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID1] gi|268622635|gb|EEZ55035.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID332] Length = 1241 Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 153/451 (33%), Positives = 240/451 (53%), Gaps = 17/451 (3%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + Q + T+ Q +AI +++D++Q M R++ Sbjct: 661 LLNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVC 720 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358 GDVG GKT VAL A AV G Q ++AP +L +QH + F ++ + + N Sbjct: 721 GDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFN 780 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 +A + LE +A G I+IGTH L QD I++ L L+I+DE+HRFGV+Q+ +L + Sbjct: 781 NSKA-TKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLR 839 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 +L MTATPIPRTL + G D S IT P+ R +KT + P + V E + Sbjct: 840 ANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRE 898 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 L G + +++ +++ ++ ER +L + I + HG++ + + E VM F Sbjct: 899 LKRGGQVFFLHNEVD-----TIENMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFL 951 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 +L+ +T+IE GID+ +A+ III A+ FGLAQLHQLRGRVGR + LL Sbjct: 952 QQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPE 1011 Query: 599 PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 ++K++ RL + ++ GF +A +DL+ R GEILG QSG + + L+ + Sbjct: 1012 YITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEM 1069 Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLY 686 L+ A +D K + PDL + G + I L+ Sbjct: 1070 LKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1098 >gi|114327500|ref|YP_744657.1| transcription-repair coupling factor [Granulibacter bethesdensis CGDNIH1] gi|114315674|gb|ABI61734.1| transcription-repair coupling factor [Granulibacter bethesdensis CGDNIH1] Length = 1149 Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 140/403 (34%), Positives = 217/403 (53%), Gaps = 19/403 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF+ T+ Q AI D+L+DM+ M R++ GDVG GKT +AL A A G Q ++ P Sbjct: 591 PFAETEDQARAIADVLEDMASGRPMDRLICGDVGFGKTEIALRAAFVAAMTGAQVAVVVP 650 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHY K + + V ++ + + +A G +I++GTHAL + Sbjct: 651 TTLLARQHYRTFAKRFEGLPVTVAQLSRMVTAKEASQVRAGLADGSVNIVVGTHALLAKT 710 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +Q+ L LVIVDE+ FGV + KL HVL +TATPIPRTL L+ G ++S I Sbjct: 711 VQFADLGLVIVDEEQHFGVSHKEKLKALRADVHVLTLTATPIPRTLQLSLSGVREMSIIA 770 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R ++T I+P + + E I+R + G + + +CP++E + + ER Sbjct: 771 TPPVDRLAVRTFIMPFDSVVVREAIQRERF---RGGQVFCVCPRLE-----DLGRMAERL 822 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + + + HG+++ + E VM F +G +L+AT ++E G+D+ + III Sbjct: 823 AEIVPE--AKLITAHGQLAPTELERVMTEFGDGKHDILLATNIVESGLDMPAVNTIIIHR 880 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622 A+ FGL QL+QLRGRVGRG++ L + LS + RL V++ + GF +A Sbjct: 881 ADMFGLGQLYQLRGRVGRGKQRGYAYLTWPQAHRLSVAAEKRLEVMQTLDTLGAGFTLAS 940 Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665 DL R G +LG +QSG + + EL+ +LE A D +H Sbjct: 941 HDLDIRGAGNLLGDEQSGHIREV--GIELYQQMLEDAVADMRH 981 >gi|240080515|ref|ZP_04725058.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae FA19] gi|240113117|ref|ZP_04727607.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae MS11] gi|240118171|ref|ZP_04732233.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae PID1] gi|240123719|ref|ZP_04736675.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae PID332] gi|268596647|ref|ZP_06130814.1| transcription-repair coupling factor [Neisseria gonorrhoeae FA19] gi|268550435|gb|EEZ45454.1| transcription-repair coupling factor [Neisseria gonorrhoeae FA19] Length = 1234 Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 153/451 (33%), Positives = 240/451 (53%), Gaps = 17/451 (3%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + Q + T+ Q +AI +++D++Q M R++ Sbjct: 654 LLNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVC 713 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358 GDVG GKT VAL A AV G Q ++AP +L +QH + F ++ + + N Sbjct: 714 GDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFN 773 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 +A + LE +A G I+IGTH L QD I++ L L+I+DE+HRFGV+Q+ +L + Sbjct: 774 NSKA-TKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLR 832 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 +L MTATPIPRTL + G D S IT P+ R +KT + P + V E + Sbjct: 833 ANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRE 891 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 L G + +++ +++ ++ ER +L + I + HG++ + + E VM F Sbjct: 892 LKRGGQVFFLHNEVD-----TIENMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFL 944 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 +L+ +T+IE GID+ +A+ III A+ FGLAQLHQLRGRVGR + LL Sbjct: 945 QQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPE 1004 Query: 599 PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 ++K++ RL + ++ GF +A +DL+ R GEILG QSG + + L+ + Sbjct: 1005 YITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEM 1062 Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLY 686 L+ A +D K + PDL + G + I L+ Sbjct: 1063 LKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1091 >gi|289763152|ref|ZP_06522530.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis GM 1503] gi|289710658|gb|EFD74674.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis GM 1503] Length = 578 Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 164/514 (31%), Positives = 260/514 (50%), Gaps = 59/514 (11%) Query: 43 DLLFYHPSSFIDRHYRPKISEISEE--RIVTITGYISQHSSFQLQK---RRPYKILLNDG 97 DLL ++P S+++ R I + E +TI I+ SF ++K R+ +I + G Sbjct: 31 DLLRHYPRSYVEGAARVGIGDARPEAGEHITIVDVITDTYSFPMKKKPNRKCLRITVGGG 90 Query: 98 TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157 ++T FF + + + K+ ++G++ K + + HP ++ +S D Sbjct: 91 RNKVTATFF--NADYIMRDLTKHTKVMLSGEVGYYKGAMQLTHPAFLILDSPDGKNHGTR 148 Query: 158 AVYSLPTGLSVDLFKKIIVEALSR--LPVLP------EW-IEK------DLLQKKSFPSI 202 ++ S+ S + +++VE R P+ P W I K D+L + P Sbjct: 149 SLKSIADA-SKAISGELVVEEFERRFFPIYPASTKVQSWDIFKCVRQVLDVLDRVDDPLP 207 Query: 203 AE------------AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 AE A IH A+ ARERL +DE + Q AL+ R E Sbjct: 208 AELRAKHGLIPEDEALRAIH---LAESQSLRERARERLTFDEAVGLQWALVARRHGELSE 264 Query: 251 IGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML-RILQGDVGSGKTL 308 G + +A ++LR +PF T Q + D+L D NR L R+LQG+VGSGKT+ Sbjct: 265 SGPSAAWKSNGLAAELLRRLPFELTAGQREVL-DVLSDGLAANRPLNRLLQGEVGSGKTI 323 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITG 357 VA++AM V+AG Q ++AP +LA QH I+ V ++TG Sbjct: 324 VAVLAMLQMVDAGYQCALLAPTEVLAAQHLRSIRDVLGPLAMGGQLGGAENATRVALLTG 383 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 +M +++ IA GQ I+IGTHAL Q+++ ++ L +V+VDEQHRFGV+QR +L K Sbjct: 384 SMTAGQKKQVRAEIASGQVGIVIGTHALLQEAVDFHNLGMVVVDEQHRFGVEQRDQLRAK 443 Query: 418 ATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDE 470 A A PH+L+MTATPIPRT+ LT GD++ S + E P GR+PI T +I + +D Sbjct: 444 APAGITPHLLVMTATPIPRTVALTVYGDLETSTLRELPLGRQPIATNVIFVKDKPAWLDR 503 Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504 R+ + G++AY + P+I+E +++ + V Sbjct: 504 AWRRIIEEAAAGRQAYVVAPRIDESDDTDVQGGV 537 >gi|307707904|ref|ZP_07644379.1| transcription-repair coupling factor [Streptococcus mitis NCTC 12261] gi|307615969|gb|EFN95167.1| transcription-repair coupling factor [Streptococcus mitis NCTC 12261] Length = 1167 Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 147/399 (36%), Positives = 226/399 (56%), Gaps = 21/399 (5%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 P+ T Q +I++I +DM M R+L GDVG GKT VA+ A AV Q V++ Sbjct: 609 FPYVETDDQLRSIEEIKRDMQDSQPMDRLLVGDVGFGKTEVAMRAAFKAVNDNKQVVVLV 668 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQHY K+ QN + +++++ + + + LE++ +GQ I+IGTH + Sbjct: 669 PTTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTETLEKLKNGQVDILIGTHRVLSK 728 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 729 DVVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVI 788 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVER 506 P R P++T ++ N D VI R V+ + G + Y++ +++ ++ ++ Sbjct: 789 ETPPTNRYPVQTYVLEKN--DSVI-RDSVLREMERGGQVYYLYNKVD--------TIDQK 837 Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E +SI +HG+MS+I E+ + F G +L+ TT+IE G+D+ +A+ + I Sbjct: 838 VSKLQELIPEASIGYVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620 ENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF I Sbjct: 898 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 A DL R G +LG QSG + EL+ LLE A Sbjct: 958 AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEA 994 >gi|322433996|ref|YP_004216208.1| transcription-repair coupling factor [Acidobacterium sp. MP5ACTX9] gi|321161723|gb|ADW67428.1| transcription-repair coupling factor [Acidobacterium sp. MP5ACTX9] Length = 1233 Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 157/459 (34%), Positives = 248/459 (54%), Gaps = 29/459 (6%) Query: 192 DLLQK--KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249 DL+QK + A N + NP K + AR + A ++ I L RK + Sbjct: 585 DLIQKYRSTETGPAPVLNKLGNPAWQK-----TKARVKKAMADMAGELIKLYAQRKAAQ- 638 Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309 G + + + ++ PF+ T Q +AI DI +DM M R+L GDVG GKT V Sbjct: 639 --GTAFSPDNNLQREFEDAFPFNETDDQLAAIADIKRDMESTQPMDRLLCGDVGYGKTEV 696 Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369 A+ A AV+ Q I+ P +L+ QH+E KK N + VE+++ + + +E Sbjct: 697 AMRAAFKAVQDSKQVAILTPTTVLSFQHFESFKKRFANFPVKVEMLSRFRTAKEKAEIME 756 Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429 + G+ I+IGTHA+ +++ L L++VDE+ RFGV+ + +L Q A VL M+AT Sbjct: 757 QTEQGKVDILIGTHAVLGQKLKFQDLGLLVVDEEQRFGVRHKERLKQMRAAIDVLAMSAT 816 Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER--LKVVLSEGKKAYW 487 PIPRTL ++ +G D+S I P R I+T++ + DE + R +++ L G ++Y+ Sbjct: 817 PIPRTLHMSLVGLRDMSVIETPPKDRMAIQTIVA---KFDEKLVRTAIEMELERGGQSYF 873 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII-HGRMSDIDKESVMDSFKNGTCKLLI 546 + ++E ++ E + + E S+ I+ HG+M + + E VM +F N +L+ Sbjct: 874 VHNRVE--------TIYEMASMIREQVPSARVIVGHGQMPEAELERVMLAFMNHEYDVLV 925 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNS 604 AT++IE G+D+ A+ III A+ GL++L+QLRGRVGR + LL P L++ + Sbjct: 926 ATSIIENGLDIPLANTIIINRADRHGLSELYQLRGRVGRSNRRAYAYLLIPPDTELTEIA 985 Query: 605 YTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 RL+ LK D GF IA DL+ R G +LG +QSG Sbjct: 986 RRRLAALKEFSDLGAGFKIAALDLELRGAGNMLGGEQSG 1024 >gi|268601549|ref|ZP_06135716.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID18] gi|268585680|gb|EEZ50356.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID18] Length = 1241 Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 153/451 (33%), Positives = 240/451 (53%), Gaps = 17/451 (3%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + Q + T+ Q +AI +++D++Q M R++ Sbjct: 661 LLNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVC 720 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358 GDVG GKT VAL A AV G Q ++AP +L +QH + F ++ + + N Sbjct: 721 GDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFN 780 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 +A + LE +A G I+IGTH L QD I++ L L+I+DE+HRFGV+Q+ +L + Sbjct: 781 NSKA-TKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLR 839 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 +L MTATPIPRTL + G D S IT P+ R +KT + P + V E + Sbjct: 840 ANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRE 898 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 L G + +++ +++ ++ ER +L + I + HG++ + + E VM F Sbjct: 899 LKRGGQVFFLHNEVD-----TIENMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFL 951 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 +L+ +T+IE GID+ +A+ III A+ FGLAQLHQLRGRVGR + LL Sbjct: 952 QQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPE 1011 Query: 599 PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 ++K++ RL + ++ GF +A +DL+ R GEILG QSG + + L+ + Sbjct: 1012 YITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEM 1069 Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLY 686 L+ A +D K + PDL + G + I L+ Sbjct: 1070 LKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1098 >gi|239999138|ref|ZP_04719062.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae 35/02] gi|268594974|ref|ZP_06129141.1| transcription-repair coupling factor [Neisseria gonorrhoeae 35/02] gi|268548363|gb|EEZ43781.1| transcription-repair coupling factor [Neisseria gonorrhoeae 35/02] gi|317164430|gb|ADV07971.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae TCDC-NG08107] Length = 1234 Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 153/451 (33%), Positives = 240/451 (53%), Gaps = 17/451 (3%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + Q + T+ Q +AI +++D++Q M R++ Sbjct: 654 LLNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVC 713 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358 GDVG GKT VAL A AV G Q ++AP +L +QH + F ++ + + N Sbjct: 714 GDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFN 773 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 +A + LE +A G I+IGTH L QD I++ L L+I+DE+HRFGV+Q+ +L + Sbjct: 774 NSKA-TKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLR 832 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 +L MTATPIPRTL + G D S IT P+ R +KT + P + V E + Sbjct: 833 ANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRE 891 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 L G + +++ +++ ++ ER +L + I + HG++ + + E VM F Sbjct: 892 LKRGGQVFFLHNEVD-----TIENMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFL 944 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 +L+ +T+IE GID+ +A+ III A+ FGLAQLHQLRGRVGR + LL Sbjct: 945 QQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPE 1004 Query: 599 PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 ++K++ RL + ++ GF +A +DL+ R GEILG QSG + + L+ + Sbjct: 1005 YITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEM 1062 Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLY 686 L+ A +D K + PDL + G + I L+ Sbjct: 1063 LKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1091 >gi|225075726|ref|ZP_03718925.1| hypothetical protein NEIFLAOT_00742 [Neisseria flavescens NRL30031/H210] gi|224952997|gb|EEG34206.1| hypothetical protein NEIFLAOT_00742 [Neisseria flavescens NRL30031/H210] Length = 653 Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 150/428 (35%), Positives = 233/428 (54%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Sbjct: 98 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 157 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F ++ + + N +A + ALE +A G I+IG Sbjct: 158 QVAVLAPTTLLVEQHAQNFADRFADFPVKVAGLSRFNNSKA-TKAALEGMADGTVDIVIG 216 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G Sbjct: 217 THKLVQDDIRFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 276 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ Sbjct: 277 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 330 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ ER +L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 331 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 388 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III + FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF Sbjct: 389 TIIINRTDKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 448 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K + PDL + G Sbjct: 449 TLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 504 Query: 679 QSIRILLY 686 + I L+ Sbjct: 505 ITTEIKLH 512 >gi|240128422|ref|ZP_04741083.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae SK-93-1035] Length = 1234 Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 153/451 (33%), Positives = 240/451 (53%), Gaps = 17/451 (3%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + Q + T+ Q +AI +++D++Q M R++ Sbjct: 654 LLNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVC 713 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358 GDVG GKT VAL A AV G Q ++AP +L +QH + F ++ + + N Sbjct: 714 GDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFN 773 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 +A + LE +A G I+IGTH L QD I++ L L+I+DE+HRFGV+Q+ +L + Sbjct: 774 NSKA-TKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLR 832 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 +L MTATPIPRTL + G D S IT P+ R +KT + P + V E + Sbjct: 833 ANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRE 891 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 L G + +++ +++ ++ ER +L + I + HG++ + + E VM F Sbjct: 892 LKRGGQVFFLHNEVD-----TIENMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFL 944 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 +L+ +T+IE GID+ +A+ III A+ FGLAQLHQLRGRVGR + LL Sbjct: 945 QQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPE 1004 Query: 599 PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 ++K++ RL + ++ GF +A +DL+ R GEILG QSG + + L+ + Sbjct: 1005 YITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEM 1062 Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLY 686 L+ A +D K + PDL + G + I L+ Sbjct: 1063 LKQAVRDLKK--GRRPDLDAPLGITTEIKLH 1091 >gi|320450396|ref|YP_004202492.1| transcription-repair coupling factor [Thermus scotoductus SA-01] gi|320150565|gb|ADW21943.1| transcription-repair coupling factor [Thermus scotoductus SA-01] Length = 980 Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 137/400 (34%), Positives = 220/400 (55%), Gaps = 17/400 (4%) Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324 I R P T Q+ A++++L+D+ M R++ GDVG GKT +AL A V G Q Sbjct: 437 IERGFPHELTPDQKQALEEVLRDLEAPFPMDRLISGDVGFGKTEIALRAAHRVVGHGAQV 496 Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384 + P +LA+QH + ++ + + +++ P+ + LE + G I+IGTH Sbjct: 497 AFLVPTTLLAEQHGKTFRERFAGLPVRIGVLSRFTPEKEEKSILEGLEKGTLDIVIGTHR 556 Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444 L Q +++ L L+IVDE+HRFGV Q+ ++ + L ++ATPIPRTL +G D Sbjct: 557 LLQPDVRFKDLGLLIVDEEHRFGVAQKERIRELKAEVDTLYLSATPIPRTLYSALVGLKD 616 Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRS 502 +S I P GRKPI+T + P + + V E + L G K +++ ++ E + + Sbjct: 617 LSSIKTPPPGRKPIRTFLAPFDPL-LVREAILFELERGGKVFYVHDRVASIEARRRYLEN 675 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 +V + I ++HG+M + E M F G +L+ATT+IE G+DV +A+ Sbjct: 676 LVP---------EARIGVVHGQMPEGLVEETMLLFAEGAYDVLLATTIIESGLDVGEANT 726 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFL 619 I+IE A+ GLA L+QLRGRVGR E+ + L + P L++ + RL+ + + D G L Sbjct: 727 ILIERADRLGLATLYQLRGRVGRREQEAYAYLFHPPRLTEAAEKRLNAIADLSDLGSGHL 786 Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 +AE+D++ R G +LG +Q G + L E++ LLE A Sbjct: 787 LAEKDMEIRGVGNLLGPEQHGHIRALSL--EVYSELLEEA 824 >gi|218249019|ref|YP_002374390.1| transcription-repair coupling factor [Cyanothece sp. PCC 8801] gi|218169497|gb|ACK68234.1| transcription-repair coupling factor [Cyanothece sp. PCC 8801] Length = 1158 Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 144/408 (35%), Positives = 225/408 (55%), Gaps = 17/408 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L L K+ KKE G + +++ + P+ PT Q A++D+ D+ M R++ Sbjct: 577 LNLYAKRAKKE-GFIYPPDTPWQEELEDSFPYQPTPDQLKAVQDVKMDLESDRPMDRLVC 635 Query: 300 GDVGSGKTLVALIAMAAAVEAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 GDVG GKT VA+ A+ AV +G Q ++AP IL QQHY +K+ I + ++ Sbjct: 636 GDVGFGKTEVAVRAIFKAVTSGHKQVALLAPTTILTQQHYHTLKERFAPYPINIGLLNRF 695 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + ++ ++R+A G+ I++GTH L S+++ L L+++DE+ RFGV Q+ K+ Sbjct: 696 RTTSEKKDIVQRLATGELDIVVGTHQLLGQSVKFKNLGLLVIDEEQRFGVNQKEKIKVLK 755 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 T VL +TATPIPRTL ++ G +IS IT P R+PIKT + N D V ++ Sbjct: 756 TEVDVLTLTATPIPRTLYMSLSGIREISLITTPPPSRRPIKTHLSSYNP-DVVRTAIRNE 814 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537 L G + +++ P++E + E + + S+ I I HG+M D E M F Sbjct: 815 LDRGGQIFYVVPRVE--------GIEEVAGQIQQMVPSARIVIAHGQMDVNDLEMTMLGF 866 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY- 596 NG +L+ TT+IE G+D+ + II+E+A+ FGL+QL+QLRGRVGR + LLY Sbjct: 867 NNGEADILVCTTIIESGLDIPRVNTIIVEDAQKFGLSQLYQLRGRVGRSGIQAHAWLLYP 926 Query: 597 -HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640 LS+ + RL L+ G+ +A D++ R G +LG +QSG Sbjct: 927 NKGQLSETARQRLRALQEFSQLGSGYQLATRDMEIRGVGNLLGAEQSG 974 >gi|167581546|ref|ZP_02374420.1| transcription-repair coupling factor [Burkholderia thailandensis TXDOH] Length = 1175 Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 160/431 (37%), Positives = 232/431 (53%), Gaps = 23/431 (5%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q Sbjct: 613 KFADSFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 672 Query: 324 AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 +++P +LA+QH + FI ++ IVE+ + A+++I G I+IGT Sbjct: 673 VALLSPTTLLAEQHTQTFIDRFADWPVKIVELSRFKSTK-EVNAAIQQINDGSVDIVIGT 731 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G Sbjct: 732 HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 791 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNF 500 D S I P R IKT + R +E + R ++ L G + Y++ ++E + N Sbjct: 792 RDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVETIE--NR 846 Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560 R+++E + I I HG+M + + E VM F +L+ TT+IE GIDV A Sbjct: 847 RAMLEELVP-----EARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSA 901 Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616 + II+ A+ FGLAQLHQLRGRVGR + LL H P L+K + RL ++ E+ Sbjct: 902 NTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELG 961 Query: 617 -GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 GF +A DL+ R GE+LG KQSG + Q L+ +L A K K+ ++PDLT+ Sbjct: 962 SGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLTA 1017 Query: 676 VRGQSIRILLY 686 + I L+ Sbjct: 1018 PLAATTEINLH 1028 >gi|237740991|ref|ZP_04571472.1| transcription-repair coupling factor [Fusobacterium sp. 4_1_13] gi|229431035|gb|EEO41247.1| transcription-repair coupling factor [Fusobacterium sp. 4_1_13] Length = 981 Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 139/377 (36%), Positives = 217/377 (57%), Gaps = 17/377 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF+ T +Q AI+D+ +DM M R++ GDVG GKT VA+ A AV Q +++ P Sbjct: 452 PFTETPAQLKAIEDVKRDMESGKIMDRLICGDVGYGKTEVAIRATFKAVMDSKQVILLVP 511 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHYE + +N + +EI++ + + ++L+RI +G A ++IGTH L D Sbjct: 512 TTVLAEQHYERFNERFKNYPVHIEILSRVQSKKEQTESLKRIENGSADLVIGTHRLLSDD 571 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ + L+I+DE+ +FGV+ + KL + VL +TATPIPRTL L+ LG D+S I Sbjct: 572 IKFKDVGLLIIDEEQKFGVKAKEKLKKIKGNIDVLTLTATPIPRTLNLSLLGIRDLSVID 631 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 P GR+ I T I N+ I ++I + EG + ++I ++ E K R ++ Sbjct: 632 TSPEGRQKIHTEYIDNNKNLIKDII--FSEISREG-QVFYIFNSVKMIESKVKEIRELLP 688 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + + IHG+M D + + F+NG +L+ATT+IE GID+ +A+ +II Sbjct: 689 EY--------IKVGYIHGQMLPKDIKKNIQEFENGNIDVLVATTIIENGIDIENANTMII 740 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEE 623 E E GL+Q++QLRGR+GR + S C +L + +KN+ R ++ + G +A E Sbjct: 741 EGVEKLGLSQVYQLRGRIGRSTKKSYCYMLMNENKTKNAKKREKSIREFDSLTGLDLAME 800 Query: 624 DLKQRKEGEILGIKQSG 640 D K R GEILG KQ G Sbjct: 801 DSKIRGVGEILGEKQHG 817 >gi|258612325|ref|ZP_05711832.1| transcription-repair coupling factor [Listeria monocytogenes F6900] gi|258610889|gb|EEW23497.1| transcription-repair coupling factor [Listeria monocytogenes F6900] Length = 709 Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 143/430 (33%), Positives = 234/430 (54%), Gaps = 21/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW ++ A + +A + L ++ +K G + + ++ ++ P+ T+ Q Sbjct: 103 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSADDEMQREFEEAFPYQETEDQL 160 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I +I +DM + M R+L GDVG GKT VAL A A+ G Q + P ILAQQH+ Sbjct: 161 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 220 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E +K+ Q I + +++ + + + L+ + +G +++GTH L ++Y L L+ Sbjct: 221 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 280 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV + K+ Q + VL +TATPIPRTL ++ LG D+S I PA R P+ Sbjct: 281 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 340 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T + N + E IER L+ + Y++ ++E S+ ++ + + Sbjct: 341 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------SITQKADEISAMVPD 389 Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A HG+M + + ESV+ SF G +L+ TT+IE G+D+ + + + +++A+ GL+Q Sbjct: 390 ARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 449 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGRVGR I+ +Y L + + RLS +K TE GF IA DL R Sbjct: 450 LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 509 Query: 631 GEILGIKQSG 640 G ILG +Q G Sbjct: 510 GNILGAQQHG 519 >gi|167619661|ref|ZP_02388292.1| transcription-repair coupling factor [Burkholderia thailandensis Bt4] Length = 1189 Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 160/431 (37%), Positives = 232/431 (53%), Gaps = 23/431 (5%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q Sbjct: 627 KFADSFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 686 Query: 324 AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 +++P +LA+QH + FI ++ IVE+ + A+++I G I+IGT Sbjct: 687 VALLSPTTLLAEQHTQTFIDRFADWPVKIVELSRFKSTK-EVNAAIQQINDGSVDIVIGT 745 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G Sbjct: 746 HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 805 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNF 500 D S I P R IKT + R +E + R ++ L G + Y++ ++E + N Sbjct: 806 RDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVETIE--NR 860 Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560 R+++E + I I HG+M + + E VM F +L+ TT+IE GIDV A Sbjct: 861 RAMLEELVP-----EARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSA 915 Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616 + II+ A+ FGLAQLHQLRGRVGR + LL H P L+K + RL ++ E+ Sbjct: 916 NTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELG 975 Query: 617 -GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 GF +A DL+ R GE+LG KQSG + Q L+ +L A K K+ ++PDLT+ Sbjct: 976 SGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLTA 1031 Query: 676 VRGQSIRILLY 686 + I L+ Sbjct: 1032 PLAATTEINLH 1042 >gi|108803751|ref|YP_643688.1| transcription-repair coupling factor [Rubrobacter xylanophilus DSM 9941] gi|108764994|gb|ABG03876.1| transcription-repair coupling factor [Rubrobacter xylanophilus DSM 9941] Length = 1054 Score = 223 bits (568), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 142/412 (34%), Positives = 230/412 (55%), Gaps = 15/412 (3%) Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292 +LAG+ LL + + + G +G+ +++ + P+ T Q +AI + +DM + Sbjct: 481 MLAGE--LLRLHAERARAEGFAFPPDGEWERELEESFPYQETPDQAAAIAAVKEDMQRPR 538 Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352 M R++ GDVG GKT VA+ A A AG Q +++AP IL QQHY ++ + + V Sbjct: 539 PMDRLVCGDVGFGKTEVAVRAAFKAALAGKQTLMLAPTTILVQQHYRTFRERLERFAVRV 598 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 E ++ A RR+ L +A G+ I+IGTHAL ++ L L++VDE+ RFGV+ + Sbjct: 599 ESLSRFTTAAERRRILRDLASGEVDILIGTHALLGAEVRPKDLGLLVVDEEQRFGVRHKE 658 Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 ++ Q T+ VL +TATPIPRT+ + G DIS I PAGR+ + T + P + +E++ Sbjct: 659 RIKQLKTSVDVLTLTATPIPRTMQMGLSGLRDISVIETPPAGRRSVLTHVGPYD--EELV 716 Query: 473 ER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531 R ++ ++ G + +++ ++E +E+ +R L A+ HG+M + E Sbjct: 717 RRAIEREVARGGQVFFVHNRVETIEEA-----AQRLRELVPGV--RFAVAHGQMPERALE 769 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 VM F G +L+ TT++E G+D+ A+ +I+E A+ GLAQL+QLRGR+GR E + Sbjct: 770 EVMQRFLEGEADVLVTTTIVESGLDIATANTLIVERADAMGLAQLYQLRGRIGRSTEQAY 829 Query: 592 CILLYHPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640 L + + RL L + TE GF +A DL+ R G +LG +QSG Sbjct: 830 AYLFAPLGATLEAQRRLEALLDFTELGSGFAVAMRDLEIRGAGNLLGAEQSG 881 >gi|3914013|sp|O52236|MFD_MYXXA RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|2736296|gb|AAB94134.1| transcription-repair coupling factor [Myxococcus xanthus] Length = 1201 Score = 223 bits (568), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 141/382 (36%), Positives = 215/382 (56%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + F T Q AI+D+L DM + M R++ GDVG GKT VA+ A A Q ++ Sbjct: 651 DFEFEETPDQAKAIEDVLADMQKPEPMDRLVCGDVGYGKTEVAMRAAFKAALDRKQVAVL 710 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+ KK + + VE+I+G R+ L+R G+ I+IGTH L Sbjct: 711 VPTTVLAQQHFLSFKKRFADYPVTVEVISGLKKAPEVREILKRAKEGKVDILIGTHKLLG 770 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + + +L L+IVDE+ RFGV+Q+ L + + VL +TATPIPRTL ++ G D+S Sbjct: 771 GEVAFKELGLMIVDEEQRFGVKQKESLKKWRSQIDVLTLTATPIPRTLHMSMSGVRDMSI 830 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSV 503 I P R+ I+T ++ + E IER ++ G + +++ ++E E+ R++ Sbjct: 831 IATPPQDRRAIRTFVMKYEDTVVKEAIER---EVARGGQVFFVHNRVESLPSIETQLRAL 887 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 V + SI + HG+M + E VM +F ++L+ T++IE GID+ A+ + Sbjct: 888 VPQV---------SIGVAHGQMGEGQLEKVMLAFTEKKYQVLLCTSIIESGIDISSANTM 938 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GF 618 I+ A+ FGLAQL+QLRGRVGR +E + LL ++K++ RL VL+N + GF Sbjct: 939 IVNRADQFGLAQLYQLRGRVGRSKERAYAYLLVPSRRAVTKDAQRRLEVLQNFTELGAGF 998 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 IA DL+ R G +LG KQSG Sbjct: 999 SIASHDLEIRGAGNLLGDKQSG 1020 >gi|227894501|ref|ZP_04012306.1| transcriptional repair coupling factor [Lactobacillus ultunensis DSM 16047] gi|227863660|gb|EEJ71081.1| transcriptional repair coupling factor [Lactobacillus ultunensis DSM 16047] Length = 1164 Score = 223 bits (568), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 144/431 (33%), Positives = 231/431 (53%), Gaps = 21/431 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ + E +A + L +++ +K G + + + ++ P+ T Q Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKQFDDAFPYPETPDQL 620 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +IK+I +DM + M R+L GDVG GKT VAL A A++ Q + P ILAQQHY Sbjct: 621 RSIKEIKEDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAIQDNKQVAFLVPTTILAQQHY 680 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I+ ++ + +++ A ++ +E + G+ +++GTH L + + L L+ Sbjct: 681 ETIQDRFKDFPVNTAMLSRFQTPAESKEIIEGLEDGKIDLVVGTHRLLSKDVHFKDLGLL 740 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + KL Q VL +TATPIPRTL ++ +G D+S + P R PI Sbjct: 741 IVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800 Query: 459 KTVI---IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 +T + IP D + ++ G + +++ +I S+ VE+ L + Sbjct: 801 QTYVMEQIPSVVKDACLREMQ----RGGQVFYLYNRI-----SDIDETVEKLQQLIPN-- 849 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + IA HGRMS E ++ F N +L+ TT+IE GID+ + + +IIE+A+H+GL+Q Sbjct: 850 ARIASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQ 909 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGR+GR ++ LY P L++ RL +++ TE GF IA DL R Sbjct: 910 LYQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGA 969 Query: 631 GEILGIKQSGM 641 G +LG +Q G Sbjct: 970 GNMLGAQQHGF 980 >gi|171320492|ref|ZP_02909522.1| transcription-repair coupling factor [Burkholderia ambifaria MEX-5] gi|171094277|gb|EDT39354.1| transcription-repair coupling factor [Burkholderia ambifaria MEX-5] Length = 1156 Score = 223 bits (568), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 159/431 (36%), Positives = 231/431 (53%), Gaps = 23/431 (5%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q Sbjct: 596 KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 655 Query: 324 AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 +++P +LA+QH + F+ ++ IVE+ + A+ +I G I+IGT Sbjct: 656 VALLSPTTLLAEQHTQTFVDRFADWPVRIVELSRFKTTK-EVNAAIAQINEGTVDIVIGT 714 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G Sbjct: 715 HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 774 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNF 500 D S I P R IKT + R +E + R ++ L G + Y++ ++E + N Sbjct: 775 RDFSVIATAPQKRLAIKTFV---RREEESVMREAMLRELKRGGQVYFLHNEVETIE--NR 829 Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560 R+++E + I I HG+M + + E VM F +L+ TT+IE GIDV A Sbjct: 830 RAMLEALVP-----EARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSA 884 Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616 + II+ A+ FGLAQLHQLRGRVGR + LL H P L+K + RL ++ E+ Sbjct: 885 NTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEELG 944 Query: 617 -GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 GF +A DL+ R GE+LG KQSG + Q L+ +L A K K+ ++PDLT+ Sbjct: 945 SGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDLTA 1000 Query: 676 VRGQSIRILLY 686 + I L+ Sbjct: 1001 PLAATTEINLH 1011 >gi|257138824|ref|ZP_05587086.1| transcription-repair coupling factor [Burkholderia thailandensis E264] Length = 898 Score = 223 bits (568), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 160/431 (37%), Positives = 232/431 (53%), Gaps = 23/431 (5%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q Sbjct: 336 KFADSFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 395 Query: 324 AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 +++P +LA+QH + FI ++ IVE+ + A+++I G I+IGT Sbjct: 396 VALLSPTTLLAEQHTQTFIDRFADWPVKIVELSRFKSTK-EVNAAIQQINDGSVDIVIGT 454 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G Sbjct: 455 HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 514 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNF 500 D S I P R IKT + R +E + R ++ L G + Y++ ++E + N Sbjct: 515 RDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVETIE--NR 569 Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560 R+++E + I I HG+M + + E VM F +L+ TT+IE GIDV A Sbjct: 570 RAMLEELVP-----EARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSA 624 Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616 + II+ A+ FGLAQLHQLRGRVGR + LL H P L+K + RL ++ E+ Sbjct: 625 NTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELG 684 Query: 617 -GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 GF +A DL+ R GE+LG KQSG + Q L+ +L A K K+ ++PDLT+ Sbjct: 685 SGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLTA 740 Query: 676 VRGQSIRILLY 686 + I L+ Sbjct: 741 PLAATTEINLH 751 >gi|221195325|ref|ZP_03568381.1| transcription-repair coupling factor [Atopobium rimae ATCC 49626] gi|221185228|gb|EEE17619.1| transcription-repair coupling factor [Atopobium rimae ATCC 49626] Length = 1150 Score = 223 bits (568), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 137/377 (36%), Positives = 206/377 (54%), Gaps = 13/377 (3%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 P+ T QESA+ DI DM + M R+L GDVG GKT VAL A A + G Q +I+ Sbjct: 607 FPYQMTPDQESALADIKLDMEARKPMDRLLCGDVGFGKTEVALRAAFKACQDGRQVMILC 666 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P ILAQQH+E + V +++ + A +RKALE A G ++++GTH L Sbjct: 667 PTTILAQQHFETFFSRFAPFGLQVAVLSRFVTPALQRKALEGFADGSVNVLVGTHRLLSA 726 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 + + L LVIVDE+ RFGVQ + +L VL ++ATPIPRT+ + G D+S I Sbjct: 727 DVNPHDLGLVIVDEEQRFGVQHKEQLKNMREQVDVLTLSATPIPRTMQMAMSGVRDMSLI 786 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P GRKP+K + + D V ++ L+ + Y++ ++ + V R N Sbjct: 787 MTPPPGRKPVKVTVGEYD-PDLVSAAIRAELARKGQVYYVSNRV-----TTIDDAVSRVN 840 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 + + + HG+MS + E VM F+ +L+ATT+IE GID + +IIE++ Sbjct: 841 EAAPE--ARVGVAHGQMSAREVEDVMLRFQEHEIDVLVATTIIESGIDNPHTNTLIIEDS 898 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623 E GLAQL+QL+GRVGRG + + ++ PL++ + RL+ + +D G IA Sbjct: 899 ERLGLAQLYQLKGRVGRGRQQAYAYFMFPAEMPLTEEATARLTAINEYQDLGSGMKIAMR 958 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R G ++G +Q G Sbjct: 959 DLEIRGAGSLMGAEQHG 975 >gi|115351983|ref|YP_773822.1| transcription-repair coupling factor [Burkholderia ambifaria AMMD] gi|115281971|gb|ABI87488.1| transcription-repair coupling factor [Burkholderia ambifaria AMMD] Length = 1185 Score = 223 bits (568), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 159/431 (36%), Positives = 231/431 (53%), Gaps = 23/431 (5%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q Sbjct: 625 KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 684 Query: 324 AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 +++P +LA+QH + F+ ++ IVE+ + A+ +I G I+IGT Sbjct: 685 VALLSPTTLLAEQHTQTFVDRFADWPVRIVELSRFKTTK-EVNAAIAQINEGTVDIVIGT 743 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G Sbjct: 744 HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 803 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNF 500 D S I P R IKT + R +E + R ++ L G + Y++ ++E + N Sbjct: 804 RDFSVIATAPQKRLAIKTFV---RREEESVIREAMLRELKRGGQVYFLHNEVETIE--NR 858 Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560 R+++E + I I HG+M + + E VM F +L+ TT+IE GIDV A Sbjct: 859 RAMLEELVP-----EARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSA 913 Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616 + II+ A+ FGLAQLHQLRGRVGR + LL H P L+K + RL ++ E+ Sbjct: 914 NTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEELG 973 Query: 617 -GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 GF +A DL+ R GE+LG KQSG + Q L+ +L A K K+ ++PDLT+ Sbjct: 974 SGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDLTA 1029 Query: 676 VRGQSIRILLY 686 + I L+ Sbjct: 1030 PLAATTEINLH 1040 >gi|268686819|ref|ZP_06153681.1| transcription-repair coupling factor [Neisseria gonorrhoeae SK-93-1035] gi|268627103|gb|EEZ59503.1| transcription-repair coupling factor [Neisseria gonorrhoeae SK-93-1035] Length = 1241 Score = 223 bits (568), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 153/451 (33%), Positives = 240/451 (53%), Gaps = 17/451 (3%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + Q + T+ Q +AI +++D++Q M R++ Sbjct: 661 LLNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVC 720 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358 GDVG GKT VAL A AV G Q ++AP +L +QH + F ++ + + N Sbjct: 721 GDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFN 780 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 +A + LE +A G I+IGTH L QD I++ L L+I+DE+HRFGV+Q+ +L + Sbjct: 781 NSKA-TKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLR 839 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 +L MTATPIPRTL + G D S IT P+ R +KT + P + V E + Sbjct: 840 ANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRE 898 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 L G + +++ +++ ++ ER +L + I + HG++ + + E VM F Sbjct: 899 LKRGGQVFFLHNEVD-----TIENMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFL 951 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 +L+ +T+IE GID+ +A+ III A+ FGLAQLHQLRGRVGR + LL Sbjct: 952 QQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPE 1011 Query: 599 PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 ++K++ RL + ++ GF +A +DL+ R GEILG QSG + + L+ + Sbjct: 1012 YITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEM 1069 Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLY 686 L+ A +D K + PDL + G + I L+ Sbjct: 1070 LKQAVRDLKK--GRRPDLDAPLGITTEIKLH 1098 >gi|292493142|ref|YP_003528581.1| transcription-repair coupling factor [Nitrosococcus halophilus Nc4] gi|291581737|gb|ADE16194.1| transcription-repair coupling factor [Nitrosococcus halophilus Nc4] Length = 1158 Score = 223 bits (568), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 135/381 (35%), Positives = 218/381 (57%), Gaps = 17/381 (4%) Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 R+ PF T Q AI+ ++ D++ + M R++ GDVG GKT VA+ A A +AG Q + Sbjct: 605 RDFPFEETPDQADAIEAVIADLTSEKPMDRLVCGDVGFGKTEVAMRAAFIASQAGKQVAV 664 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 + P +LAQQH++ K + + VE+++ + + + IA G+ I+IGTH L Sbjct: 665 LVPTTLLAQQHHQSFKDRFADWPVRVEVMSRFRSRKEQETIVNGIADGRVDIVIGTHKLL 724 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 Q++I + L LVI+DE+HRFGV+Q+ ++ VL +TATPIPRTL ++ G D+S Sbjct: 725 QENIHFKDLGLVIIDEEHRFGVRQKERMKALRAEVDVLTLTATPIPRTLHMSLSGLRDLS 784 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVV 504 I PA R IKT + + D+ + R ++ + G + Y++ ++E + + Sbjct: 785 IIATPPARRLAIKTF---VRQWDDSLLREALLREIKRGGQIYFLHNEVE-----SIEKMA 836 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 R +L + + + HG+M + + E VM +F + +L+ TT+IE GID+ A+ II Sbjct: 837 HRVQTLFPE--AKVGVAHGQMRERELEQVMLNFYHRRFNVLVCTTIIETGIDIPSANTII 894 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFL 619 I A+ FGLAQL+QLRGRVGR + L+ P ++ ++ RL +++ E+ GF Sbjct: 895 IHRADKFGLAQLYQLRGRVGRSHHRAYAYLIVPPRSVMTADAVKRLEAIESLEELGAGFT 954 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A D++ R GE+LG QSG Sbjct: 955 LATHDMEIRGAGELLGKGQSG 975 >gi|295694758|ref|YP_003587996.1| transcription-repair coupling factor [Bacillus tusciae DSM 2912] gi|295410360|gb|ADG04852.1| transcription-repair coupling factor [Bacillus tusciae DSM 2912] Length = 1174 Score = 223 bits (568), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 139/380 (36%), Positives = 213/380 (56%), Gaps = 21/380 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q AI++I +DM Q M R+L GDVG GKT VA+ A AV G Q ++ P Sbjct: 617 PYRETPDQLKAIEEIKRDMEQPRPMDRLLCGDVGYGKTEVAMRAAFKAVMDGKQVAVLVP 676 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHYE ++ Q I +++++ + + L+++ G IIIGTH L Q Sbjct: 677 TTVLAQQHYETFRERFQGFPISIDVVSRFRTRGEMSQVLKQLRAGTVDIIIGTHRLLQKD 736 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +++ L L+IVDE+ RFGV + +L Q T L +TATPIPRTL ++ LG D+S I Sbjct: 737 VKFKDLGLLIVDEEQRFGVTHKERLKQLKTNVDCLTLTATPIPRTLHMSMLGVRDLSIIE 796 Query: 450 EKPAGRKPIKTVIIPINRI--DEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 P R P++T ++ + + E IER + G + Y++ +++ E+ + R +V Sbjct: 797 TPPENRFPVQTYVLEYDDLLAKEAIER---EIGRGGQVYFLYNKVQDIEQMADHVRRLVP 853 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + +A+ HG+M + E VM F +G +L+ TT+IE G+D+ + + +I+ Sbjct: 854 ---------DAKVAVAHGQMPEDHLELVMLEFLHGEHDVLVTTTIIETGLDIPNVNTLIV 904 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620 +A+H GL+QL+QLRGRVGR I+ Y P L++ + RL +K TE GF I Sbjct: 905 YDADHLGLSQLYQLRGRVGRSSRIAYAYFTYQPEKVLTEVAEKRLQAIKEFTELGSGFKI 964 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL R G +LG +Q G Sbjct: 965 ALRDLSIRGAGNLLGPEQHG 984 >gi|83720153|ref|YP_442612.1| transcription-repair coupling factor [Burkholderia thailandensis E264] gi|83653978|gb|ABC38041.1| transcription-repair coupling factor [Burkholderia thailandensis E264] Length = 1217 Score = 223 bits (568), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 160/431 (37%), Positives = 232/431 (53%), Gaps = 23/431 (5%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q Sbjct: 655 KFADSFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 714 Query: 324 AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 +++P +LA+QH + FI ++ IVE+ + A+++I G I+IGT Sbjct: 715 VALLSPTTLLAEQHTQTFIDRFADWPVKIVELSRFKSTK-EVNAAIQQINDGSVDIVIGT 773 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G Sbjct: 774 HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 833 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNF 500 D S I P R IKT + R +E + R ++ L G + Y++ ++E + N Sbjct: 834 RDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVETIE--NR 888 Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560 R+++E + I I HG+M + + E VM F +L+ TT+IE GIDV A Sbjct: 889 RAMLEELVP-----EARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSA 943 Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616 + II+ A+ FGLAQLHQLRGRVGR + LL H P L+K + RL ++ E+ Sbjct: 944 NTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELG 1003 Query: 617 -GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 GF +A DL+ R GE+LG KQSG + Q L+ +L A K K+ ++PDLT+ Sbjct: 1004 SGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLTA 1059 Query: 676 VRGQSIRILLY 686 + I L+ Sbjct: 1060 PLAATTEINLH 1070 >gi|300703955|ref|YP_003745557.1| transcription-repair ATP-dependent coupling factor, helicase [Ralstonia solanacearum CFBP2957] gi|299071618|emb|CBJ42942.1| transcription-repair ATP-dependent coupling factor, helicase [Ralstonia solanacearum CFBP2957] Length = 1147 Score = 223 bits (568), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 147/415 (35%), Positives = 218/415 (52%), Gaps = 23/415 (5%) Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 A ++ L R+ ++ P+ + + F T Q +AI ++ DM+ M Sbjct: 570 AAELLNLYARRALRQGFAFPLTPNDY--EAFAESFGFDETPDQAAAITAVIADMTSGKPM 627 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R++ GDVG GKT VAL A AV G Q ++AP +LA+QHY+ + + + + Sbjct: 628 DRLVCGDVGFGKTEVALRAAFVAVMGGKQVAMLAPTTLLAEQHYQTLADRFADWPVRIAE 687 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 I+ + A+E I G I+IGTH L +Q+ +L LVI+DE+HRFGV+Q+ L Sbjct: 688 ISRFKNKKEIDAAIEAINAGTIDIVIGTHKLLSPDVQFDRLGLVIIDEEHRFGVRQKEAL 747 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 VL +TATPIPRTL + G D S I P R IKT + R ++ + R Sbjct: 748 KTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTF---VRREEDSVLR 804 Query: 475 LKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530 ++ L G + Y++ ++E E K + ++V + +A+ HG+M + + Sbjct: 805 EAILRELKRGGQVYFLHNEVETIENKRAKLEALVPE---------ARVAVAHGQMHEREL 855 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 E VM F +L+ TT+IE GIDV A+ I+I A+ FGLAQLHQLRGRVGR + Sbjct: 856 ERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRADKFGLAQLHQLRGRVGRSHHQA 915 Query: 591 SCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 LL H L+K + RL ++ E+ GF +A DL+ R GE+LG KQSG Sbjct: 916 YAYLLVHDAEGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDKQSG 970 >gi|148262223|ref|YP_001228929.1| transcription-repair coupling factor [Geobacter uraniireducens Rf4] gi|146395723|gb|ABQ24356.1| transcription-repair coupling factor [Geobacter uraniireducens Rf4] Length = 1159 Score = 223 bits (568), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 154/457 (33%), Positives = 244/457 (53%), Gaps = 31/457 (6%) Query: 220 WT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 W + AR R A E+ AG++ + +Q ++ G + + ++ Q+ + F T Q+ Sbjct: 571 WEKTKARARAAIQEM-AGELLKIYAARQVEE--GHAFSPQDELYQEFEASFAFEETPDQQ 627 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI+D+L DM K M R++ GDVG GKT VA+ AV G Q ++ P ILAQQH Sbjct: 628 AAIEDVLHDMESKRPMDRLVCGDVGYGKTEVAMRGAFKAVMDGKQVALLVPTTILAQQHM 687 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + + + VE+++ ++ LE + G+ IIIGTH L Q + + L L+ Sbjct: 688 ETFAERFKAYPVKVEMLSRFRSAKEQKAILEGVKKGEVDIIIGTHRLLQKDVVFKDLGLL 747 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV + +L Q ++ +TATPIPRTL ++ +G D+S I P R I Sbjct: 748 IIDEEQRFGVSHKERLKQFRAVVDIMTLTATPIPRTLYMSLMGIRDLSIIDTPPVDRLAI 807 Query: 459 KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--- 514 KT + DE+I E + L G + +++ + V+ ++ EH Sbjct: 808 KTFV--ARSSDELIREAVLRELRRGGQVFFV------------HNRVQTIGAMAEHLQQI 853 Query: 515 --TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 + IA+ HG+M + + E VM F +G LL+ TT+IE G+D+ A+ +I+ A+ FG Sbjct: 854 VPEARIAVGHGQMDEKELERVMLGFMHGETNLLLCTTIIESGLDIPTANTLIVSRADTFG 913 Query: 573 LAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627 L+QL+QLRGRVGR ++ + LL +S ++ RL +++ + GF IA DL+ Sbjct: 914 LSQLYQLRGRVGRSKQRAYAYLLIPGEGAISADARERLKIIQELTELGAGFRIATHDLEI 973 Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 R G++LG +QSG EL+ LLE A + K Sbjct: 974 RGAGDLLGARQSG--DIAAVGFELYTELLEEAIRQLK 1008 >gi|217965700|ref|YP_002351378.1| transcription-repair coupling factor [Listeria monocytogenes HCC23] gi|217334970|gb|ACK40764.1| transcription-repair coupling factor [Listeria monocytogenes HCC23] gi|307569753|emb|CAR82932.1| transcription-repair coupling factor [Listeria monocytogenes L99] Length = 1179 Score = 223 bits (568), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 142/430 (33%), Positives = 234/430 (54%), Gaps = 21/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW ++ A + +A + L ++ +K G + + ++ ++ P+ T+ Q Sbjct: 573 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSADDEMQREFEEAFPYQETEDQL 630 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I +I +DM + M R+L GDVG GKT VAL A A+ G Q + P ILAQQH+ Sbjct: 631 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E +K+ Q I + +++ + + + L+ + +G +++GTH L ++Y L L+ Sbjct: 691 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 750 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV + K+ Q + VL +TATPIPRTL ++ LG D+S I PA R P+ Sbjct: 751 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T + N + E IER L+ + Y++ ++E S+ ++ + + Sbjct: 811 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------SITQKADEISAMVPD 859 Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A HG+M + + E+V+ SF G +L+ TT+IE G+D+ + + + +++A+ GL+Q Sbjct: 860 ARVATAHGQMGESELEAVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 919 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGRVGR I+ +Y L + + RLS +K TE GF IA DL R Sbjct: 920 LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 979 Query: 631 GEILGIKQSG 640 G ILG +Q G Sbjct: 980 GNILGAQQHG 989 >gi|307702811|ref|ZP_07639761.1| transcription-repair coupling factor [Streptococcus oralis ATCC 35037] gi|307623667|gb|EFO02654.1| transcription-repair coupling factor [Streptococcus oralis ATCC 35037] Length = 1166 Score = 223 bits (568), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 149/406 (36%), Positives = 230/406 (56%), Gaps = 25/406 (6%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 P+ T Q +I++I +DM + M R+L GDVG GKT VA+ A AV Q V++ Sbjct: 608 FPYVETDDQLRSIEEIKRDMQDSHPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLV 667 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQHY K+ QN + +++++ + + + LE++ +GQ I+IGTH + Sbjct: 668 PTTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQAETLEKLKNGQVDILIGTHRVLSK 727 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 728 DVVFSDLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVI 787 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505 P R P++T ++ N D VI VL E G + Y++ +++ ++ + Sbjct: 788 ETPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIDQ 835 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + + L E +SI +HG+MS+I E+ + F G +L+ TT+IE G+D+ +A+ + Sbjct: 836 KVSELQELIPEASIGYVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLF 895 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFL 619 IENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF Sbjct: 896 IENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFK 955 Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 IA DL R G +LG QSG + EL+ LLE IA+++ Sbjct: 956 IAMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 999 >gi|293364521|ref|ZP_06611246.1| transcription-repair coupling factor [Streptococcus oralis ATCC 35037] gi|291317029|gb|EFE57457.1| transcription-repair coupling factor [Streptococcus oralis ATCC 35037] Length = 1167 Score = 223 bits (568), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 149/406 (36%), Positives = 230/406 (56%), Gaps = 25/406 (6%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 P+ T Q +I++I +DM + M R+L GDVG GKT VA+ A AV Q V++ Sbjct: 609 FPYVETDDQLRSIEEIKRDMQDSHPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLV 668 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQHY K+ QN + +++++ + + + LE++ +GQ I+IGTH + Sbjct: 669 PTTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQAETLEKLKNGQVDILIGTHRVLSK 728 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 729 DVVFSDLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVI 788 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505 P R P++T ++ N D VI VL E G + Y++ +++ ++ + Sbjct: 789 ETPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIDQ 836 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + + L E +SI +HG+MS+I E+ + F G +L+ TT+IE G+D+ +A+ + Sbjct: 837 KVSELQELIPEASIGYVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLF 896 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFL 619 IENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF Sbjct: 897 IENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFK 956 Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 IA DL R G +LG QSG + EL+ LLE IA+++ Sbjct: 957 IAMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000 >gi|186475762|ref|YP_001857232.1| transcription-repair coupling factor [Burkholderia phymatum STM815] gi|184192221|gb|ACC70186.1| transcription-repair coupling factor [Burkholderia phymatum STM815] Length = 1164 Score = 223 bits (568), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 167/478 (34%), Positives = 247/478 (51%), Gaps = 29/478 (6%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W R+ A ++ L R+ ++ P++ + K + F T Q Sbjct: 556 QWEKAKRKAAQQIRDTAAELLNLYARRAMREGHAFPLDPRDYV--KFAESFGFEETPDQA 613 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q +++P +LA+QH Sbjct: 614 AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHT 673 Query: 339 E-FIKKYTQNTQIIVEII---TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394 + F +++ I E+ TG A ++++I G I+IGTH L +Q+ + Sbjct: 674 QTFTDRFSDWPVRIAELSRFKTGKEVSA----SIQQINEGSVDIVIGTHKLLSSDVQFKR 729 Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454 L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G D S I P Sbjct: 730 LGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQK 789 Query: 455 RKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 R IKT + D VI E + L G + Y++ ++E + N R ++E Sbjct: 790 RLAIKTFVR--REEDGVIREAMLRELKRGGQVYFLHNEVETIE--NRRQMLEALVP---- 841 Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 + IA+ HG+M + + E VM F +L+ TT+IE GIDV A+ I+I A+ FGL Sbjct: 842 -EARIAVAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTILIHRADKFGL 900 Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628 AQLHQLRGRVGR + LL H P L+K + RL ++ E+ GF +A DL+ R Sbjct: 901 AQLHQLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRRLEAIQQMEELGAGFYLAMHDLEIR 960 Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686 GE+LG KQSG + Q L+ +L A K K+ ++PDLT+ + I L+ Sbjct: 961 GTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1014 >gi|290894278|ref|ZP_06557245.1| transcription-repair coupling factor [Listeria monocytogenes FSL J2-071] gi|290556162|gb|EFD89709.1| transcription-repair coupling factor [Listeria monocytogenes FSL J2-071] Length = 1179 Score = 223 bits (568), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 142/430 (33%), Positives = 234/430 (54%), Gaps = 21/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW ++ A + +A + L ++ +K G + + ++ ++ P+ T+ Q Sbjct: 573 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSADDEMQREFEEAFPYQETEDQL 630 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I +I +DM + M R+L GDVG GKT VAL A A+ G Q + P ILAQQH+ Sbjct: 631 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E +K+ Q I + +++ + + + L+ + +G +++GTH L ++Y L L+ Sbjct: 691 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 750 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV + K+ Q + VL +TATPIPRTL ++ LG D+S I PA R P+ Sbjct: 751 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T + N + E IER L+ + Y++ ++E S+ ++ + + Sbjct: 811 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------SITQKADEISAMVPD 859 Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A HG+M + + E+V+ SF G +L+ TT+IE G+D+ + + + +++A+ GL+Q Sbjct: 860 ARVATAHGQMGESELEAVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 919 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGRVGR I+ +Y L + + RLS +K TE GF IA DL R Sbjct: 920 LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 979 Query: 631 GEILGIKQSG 640 G ILG +Q G Sbjct: 980 GNILGAQQHG 989 >gi|158321662|ref|YP_001514169.1| transcription-repair coupling factor [Alkaliphilus oremlandii OhILAs] gi|158141861|gb|ABW20173.1| transcription-repair coupling factor [Alkaliphilus oremlandii OhILAs] Length = 1174 Score = 223 bits (568), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 145/428 (33%), Positives = 231/428 (53%), Gaps = 17/428 (3%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW + E +AG++ L ++ K G + + ++ P+ T Q Sbjct: 574 EWAKTKTKVKKAIEDMAGELIKLYAEREKTK--GHAFSPDSDWQKQFEELFPYEETPDQL 631 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 I+++ QDM ++ M R+L GDVG GKT VA+ A AV Q + P ILAQQHY Sbjct: 632 RCIEEVKQDMEKERAMDRLLCGDVGYGKTEVAIRAAFKAVGDSKQVAFLVPTTILAQQHY 691 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 K+ + I VE+++ ++K +E I G I+IGTH L I+Y L L+ Sbjct: 692 NTFKQRFSDFPITVEMLSRFKNATAQKKIIENIRTGNVDIVIGTHRLLSKDIEYKDLGLL 751 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + L + + VL +TATPIPRTL ++ +G D+S I + P R P+ Sbjct: 752 IVDEEQRFGVKHKEALKKLKKSIDVLTLTATPIPRTLHMSMIGIRDMSVIEDPPEERFPV 811 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSS 517 +T ++ + V++ + L+ G + Y++ +++ + + N+L E Sbjct: 812 QTYVLGYSE-SMVVDAISRELARGGQVYYVYNRVQ--------GIHQVANNLKELVPQGR 862 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 +A+ HG+MS+ + E +M + NG +L++TT+IE G+D+ + + III++A+ GL+QL+ Sbjct: 863 VAVAHGQMSERELEKIMLEYMNGEYDILVSTTIIETGMDISNVNTIIIQDADKLGLSQLY 922 Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGE 632 QLRGRVGR L+Y LS+ + RL +K TE GF IA DL+ R G Sbjct: 923 QLRGRVGRSYRQGYAYLMYEKDKILSEVAEKRLKAIKEFTEFGSGFKIAMRDLEIRGAGN 982 Query: 633 ILGIKQSG 640 +LG +Q G Sbjct: 983 LLGGEQHG 990 >gi|284046682|ref|YP_003397022.1| transcription-repair coupling factor [Conexibacter woesei DSM 14684] gi|283950903|gb|ADB53647.1| transcription-repair coupling factor [Conexibacter woesei DSM 14684] Length = 1112 Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 151/429 (35%), Positives = 228/429 (53%), Gaps = 21/429 (4%) Query: 220 W-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 W T AR R A E+ AG+ LL + + K+ G + ++ P+ T Q Sbjct: 519 WDTLKARARRAAQEM-AGE--LLNLYAERKRRAGHAFPPDSDWMREFEDAWPYRETPDQR 575 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 AI+ + DM M R++ GDVG GKT VAL A A G Q +++ P ILAQQHY Sbjct: 576 EAIEQVKTDMETARPMDRLICGDVGYGKTEVALRAAFKAANDGRQVMVLVPTTILAQQHY 635 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + ++ +E ++ P A +R A+ G I+IGTH L ++ L L+ Sbjct: 636 GTFAERLKDYPFTIEHVSRFRPAAEQRAAIRAFTEGSVDILIGTHRLLSRDVRPRDLGLL 695 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+Q+ L Q V+ M+ATPIPRTL ++ G DIS I P GR+P+ Sbjct: 696 IVDEEQRFGVKQKELLRQLKLKVDVIAMSATPIPRTLQMSIAGIRDISVIETPPEGRRPV 755 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 KT + + + IER + S G +A+++ ++E E+ ER +L + Sbjct: 756 KTYVGEYDEQLVKSAIERER---SRGGQAFFLHNRVETIDET-----AERLRALCPE--A 805 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 + HG++ + E M F G +L+AT++IE GID+ A+ +++E A+ FGL+QL Sbjct: 806 RFEVAHGQLDEKTLEERMLRFLRGEADVLVATSIIESGIDIPQANTLMVERADLFGLSQL 865 Query: 577 HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 +Q+RGRVGR E + LLY L+ ++ RLS L + + GF +A DL+ R G Sbjct: 866 YQIRGRVGRSRERAYAYLLYPSASALTADAAQRLSALSDYTELGAGFKVAMRDLEIRGAG 925 Query: 632 EILGIKQSG 640 +LG +QSG Sbjct: 926 NLLGDEQSG 934 >gi|116617523|ref|YP_817894.1| transcription-repair coupling factor [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096370|gb|ABJ61521.1| transcription-repair coupling factor [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 1179 Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 149/465 (32%), Positives = 252/465 (54%), Gaps = 26/465 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ A E +A + L +++ ++ P + +I K + + T Q Sbjct: 567 EWAKTKRQVAAKIEDIADDLLELYAKREAQQGYVFPPDDHAQI--KFDDSFGYPETPDQI 624 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I++I DM + M R+L GDVG GKT VAL A+ A +G Q +AP IL QQHY Sbjct: 625 RSIEEIKVDMQKLRPMDRLLVGDVGFGKTEVALRAVFKAAHSGKQVAFLAPTTILVQQHY 684 Query: 339 E-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 E + +++ +I + +++ + +E++ + + +++GTH L + + L L Sbjct: 685 ETMLARFSDFPEIKIGVLSRFQTPTQNKMIIEQLQNHEIDVVVGTHRLLSKDVDFSDLGL 744 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +I+DE+ RFGV+ + +L Q T+ VL +TATPIPRTL + +G D+S I PA R P Sbjct: 745 LIIDEEQRFGVKHKERLKQLRTSVDVLTLTATPIPRTLNMAMVGARDLSVIETPPANRYP 804 Query: 458 IKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 I+T ++ ++ + + IE K + G+ Y + ++ +V + L + Sbjct: 805 IQTYVLAMDWKIVRDAIE--KEITRNGQVFYL------HNRVADLDRIVSQIEELIP--S 854 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A IHG+MS+ ES++ F NG +L+ TT+IE G+D+ +A+ +I+ENA+H GLAQ Sbjct: 855 ARVAAIHGQMSETQLESILYDFLNGQYDVLVTTTIIETGVDIPNANTLIVENADHMGLAQ 914 Query: 576 LHQLRGRVGRGEEISSCILLY---HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ Y P S+ + RL +++ TE GF IA DL R Sbjct: 915 LYQLRGRVGRSTRLAYAYFTYPFTRTP-SEEAEKRLEAIRDFTELGSGFRIAMRDLSIRG 973 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQDPD 672 G++LG +Q G + +++ +L+ +A+K K + P+ Sbjct: 974 AGDLLGKQQHGFIDSV--GYDMYTQMLKDTVAQKQGKQVTASQPE 1016 >gi|260072636|gb|ACX30534.1| transcription-repair coupling factor [uncultured SUP05 cluster bacterium] gi|269468648|gb|EEZ80288.1| transcription-repair coupling factor (superfamily II helicase) [uncultured SUP05 cluster bacterium] Length = 1143 Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 144/381 (37%), Positives = 216/381 (56%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + PF T Q ++++L DM M R++ GDVG GKT +A+ A AVE+G Q I+ Sbjct: 596 SFPFEETPDQLKTMEEVLADMQSTKPMDRLVCGDVGFGKTEIAMRAAFIAVESGKQVAIL 655 Query: 328 APIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 P +LA QH++ F ++ I + P+ ++ L + G+ IIIGTH L Sbjct: 656 VPTTLLANQHHQSFADRFINYPIEISSLSRFQTPKEQKQIKL-LLLEGKIDIIIGTHKLI 714 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI-DI 445 Q SI+Y L LVI+DE+HRFGV+Q+ L + +L MTATPIPRTL + +LG + ++ Sbjct: 715 QGSIKYKNLGLVIIDEEHRFGVKQKESLKKFRGQSDILTMTATPIPRTLNM-ALGSLREL 773 Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 S I P GR I+T + N + V E L G + + + I+ N +++ Sbjct: 774 SIIATPPQGRSAIQTFVNEWND-NTVKEACSRELHRGGQIFVLHNDIDSI--DNMAQILK 830 Query: 506 RFN-SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 ++H + I HG+M + E +M F +G ++L+ TT+IE GID+ +A+ II Sbjct: 831 DLMPNIH------VRIAHGQMPSKELERIMSDFYHGRFQILVCTTIIETGIDIPNANTII 884 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GFL 619 I NA++FGLAQLHQLRGRVGR + L+ H LSKN+ RL +++ E+ GF+ Sbjct: 885 INNAQNFGLAQLHQLRGRVGRSHHRAYAYLVIKSHQSLSKNAKKRLDAIESLEELGAGFM 944 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R G++LG QSG Sbjct: 945 LANHDLEIRGAGDLLGDNQSG 965 >gi|260440312|ref|ZP_05794128.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae DGI2] gi|291043604|ref|ZP_06569320.1| transcription-repair coupling factor [Neisseria gonorrhoeae DGI2] gi|291012067|gb|EFE04056.1| transcription-repair coupling factor [Neisseria gonorrhoeae DGI2] Length = 1234 Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 153/451 (33%), Positives = 240/451 (53%), Gaps = 17/451 (3%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + Q + T+ Q +AI +++D++Q M R++ Sbjct: 654 LLNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVC 713 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358 GDVG GKT VAL A AV G Q ++AP +L +QH + F ++ + + N Sbjct: 714 GDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFN 773 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 +A + LE +A G I+IGTH L QD I++ L L+I+DE+HRFGV+Q+ +L + Sbjct: 774 NSKA-TKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLR 832 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 +L MTATPIPRTL + G D S IT P+ R +KT + P + V E + Sbjct: 833 ANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRE 891 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 L G + +++ +++ ++ ER +L + I + HG++ + + E VM F Sbjct: 892 LKRGGQVFFLHNELD-----TIENMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFL 944 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 +L+ +T+IE GID+ +A+ III A+ FGLAQLHQLRGRVGR + LL Sbjct: 945 QQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPE 1004 Query: 599 PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655 ++K++ RL + ++ GF +A +DL+ R GEILG QSG + + L+ + Sbjct: 1005 YITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEM 1062 Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLY 686 L+ A +D K + PDL + G + I L+ Sbjct: 1063 LKQAVRDLKK--GRRPDLDAPLGITTEIKLH 1091 >gi|222152152|ref|YP_002561312.1| transcription-repair coupling factor [Macrococcus caseolyticus JCSC5402] gi|222121281|dbj|BAH18616.1| transcription-repair coupling factor [Macrococcus caseolyticus JCSC5402] Length = 1166 Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 143/381 (37%), Positives = 211/381 (55%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ PT Q+ ++ +I DM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 614 DFPYEPTHDQKQSLIEIKGDMEKSKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVAFL 673 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE I + Q+ + V++++ + + + G I++GTH L Sbjct: 674 VPTTILAQQHYETIIERMQDYPVEVQMMSRFRTTKEVNETKKGLKSGFVDIVVGTHKLLG 733 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I Y L L+IVDE+ RFGV + K+ T VL +TATPIPRTL ++ LG D+S Sbjct: 734 KDIVYKDLGLLIVDEEQRFGVTHKEKIKALKTNVDVLTLTATPIPRTLHMSLLGVRDLSV 793 Query: 448 ITEKPAGRKPIKTVIIPI--NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ ++ ++ + Sbjct: 794 IETPPENRFPVQTYVLEYQHNFIKEAMER---ELSRNGQVFYLYNRV--------ATIYQ 842 Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L + IA+ HG+MS+ + E M F NG +L+ TT+IE G+DV +A+ +I Sbjct: 843 KAEQLEMMMPDARIAVAHGQMSERELEETMLGFINGEYDILVTTTIIETGVDVPNANTLI 902 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFL 619 IE+A+ FGL+QL+QLRGRVGR IS L+ P L++ + RL +K TE GF Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSNRISYAYFLHAPNKVLTEVAEQRLQAIKEFTELGSGFK 962 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 IA DL R G +LG +Q G Sbjct: 963 IAMRDLNIRGAGNLLGKQQHG 983 >gi|170699745|ref|ZP_02890779.1| transcription-repair coupling factor [Burkholderia ambifaria IOP40-10] gi|170135336|gb|EDT03630.1| transcription-repair coupling factor [Burkholderia ambifaria IOP40-10] Length = 1156 Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 159/431 (36%), Positives = 231/431 (53%), Gaps = 23/431 (5%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q Sbjct: 596 KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 655 Query: 324 AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 +++P +LA+QH + F+ ++ IVE+ + A+ +I G I+IGT Sbjct: 656 VALLSPTTLLAEQHTQTFVDRFADWPVRIVELSRFKTTK-EVNAAIAQINEGTVDIVIGT 714 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G Sbjct: 715 HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 774 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNF 500 D S I P R IKT + R +E + R ++ L G + Y++ ++E + N Sbjct: 775 RDFSVIATAPQKRLAIKTFV---RREEESVIREAMLRELKRGGQVYFLHNEVETIE--NR 829 Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560 R+++E + I I HG+M + + E VM F +L+ TT+IE GIDV A Sbjct: 830 RAMLEELVP-----EARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSA 884 Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616 + II+ A+ FGLAQLHQLRGRVGR + LL H P L+K + RL ++ E+ Sbjct: 885 NTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEELG 944 Query: 617 -GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 GF +A DL+ R GE+LG KQSG + Q L+ +L A K K+ ++PDLT+ Sbjct: 945 SGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDLTA 1000 Query: 676 VRGQSIRILLY 686 + I L+ Sbjct: 1001 PLAATTEINLH 1011 >gi|257871350|ref|ZP_05651003.1| transcription-repair coupling factor [Enterococcus gallinarum EG2] gi|257805514|gb|EEV34336.1| transcription-repair coupling factor [Enterococcus gallinarum EG2] Length = 1173 Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 140/431 (32%), Positives = 235/431 (54%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ A E +A + LL +++ +K G + ++ P+S T Q Sbjct: 568 EWAKTKRKVSAKIEDIADDLILLYAKRESEK--GYAFQPDDGYQKEFEDAFPYSETDDQL 625 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I +DM ++ M R+L GDVG GKT VAL A A++ Q + P ILAQQHY Sbjct: 626 RSTAEIKRDMEKEKPMDRLLVGDVGFGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 685 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + + + V +++ + + + +E++ GQ I++GTH L +++ L L+ Sbjct: 686 ETMLDRFEGFPVNVGLLSRFRTKKQQTETIEQVKKGQIDILVGTHRLLSKDVEFADLGLL 745 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 ++DE+ RFGV+ + +L Q + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 746 VIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 805 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ +N + E I R ++ G + +++ +++ E+K +++V Sbjct: 806 QTYVMEMNPGAVREAILR---EMARGGQVFYLYNRVDTIERKVEELQALVP--------- 853 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + I HG+M++I E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 854 DARIGYAHGQMTEIQLENTLFDFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLS 913 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 914 TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRG 973 Query: 630 EGEILGIKQSG 640 G +LG +Q G Sbjct: 974 AGNLLGAQQHG 984 >gi|329731067|gb|EGG67439.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus 21193] Length = 1168 Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ ++ E + G I++GTH L Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTSKEIKQTKEGLKTGFVDIVVGTHKLLS 733 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE+A+ FGL+QL+QLRGRVGR I L HP L++ + RL +K TE GF Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 IA DL R G +LG +Q G Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983 >gi|113475354|ref|YP_721415.1| transcription-repair coupling factor [Trichodesmium erythraeum IMS101] gi|110166402|gb|ABG50942.1| transcription-repair coupling factor [Trichodesmium erythraeum IMS101] Length = 1180 Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 139/414 (33%), Positives = 228/414 (55%), Gaps = 21/414 (5%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 + LL + Q ++ G + +++ + P+ PT Q A +D+ +DM + M R+ Sbjct: 587 VDLLKLYAQRAQQTGYSFPPDTPWQEEMEDSFPYQPTPDQLKATQDVKRDMESERAMDRL 646 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 + GDVG GKT VA+ A+ AV A Q +AP +L QQHY +K+ I + ++ Sbjct: 647 VCGDVGFGKTEVAIRAIFKAVIAEKQVAFLAPTTVLTQQHYHTLKERFAPYPIEIGLLNR 706 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 +++ R+A G+ II+GTH++ +IQ+ +L L++VDE+ RFGV Q+ K+ Sbjct: 707 FRTPNEKKEIQHRLATGELDIIVGTHSILSKTIQFRELGLLVVDEEQRFGVNQKEKIKAL 766 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 VL +TATPIPRTL + G ++S IT P R+PIKT + P + ++ ++ Sbjct: 767 KAEVDVLTLTATPIPRTLYMALSGIREMSVITTPPPLRRPIKTHLAPYD-LETARTAIRQ 825 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDS 536 L+ G + +++ P+IE + E L E + I I HG+M + ES+M + Sbjct: 826 ELNRGGQVFYVVPRIE--------GIEELAGKLREMIPGARINIGHGKMDAAELESIMLT 877 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F G +L+ TT+IE G+D+ + I+IE+A+ FGL+QL+QLRGRVGR + + L+ Sbjct: 878 FSAGEADILVCTTIIESGLDIPRVNTILIEDAQKFGLSQLYQLRGRVGRA-GVQAHAWLF 936 Query: 597 HP-------PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSG 640 +P L+ ++ RL ++ G+ +A DL+ R G+ILG +QSG Sbjct: 937 YPTTSSGGIALTDDAQKRLRAIQEFTQLGSGYHLAIRDLEIRGAGDILGAEQSG 990 >gi|306828591|ref|ZP_07461785.1| transcription-repair coupling factor [Streptococcus mitis ATCC 6249] gi|304429199|gb|EFM32285.1| transcription-repair coupling factor [Streptococcus mitis ATCC 6249] Length = 1167 Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 149/407 (36%), Positives = 230/407 (56%), Gaps = 27/407 (6%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 P+ T Q +I++I +DM + M R+L GDVG GKT VA+ A AV Q V++ Sbjct: 609 FPYIETDDQLRSIEEIKRDMQDSHPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLV 668 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQHY K+ QN + +++++ + + + LE++ +GQ I+IGTH + Sbjct: 669 PTTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQAETLEKLKNGQVDILIGTHRVLSK 728 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 729 DVVFSDLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVI 788 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSV 503 P R P++T ++ N D VI VL E G + Y++ +++ ++K S + + Sbjct: 789 ETPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVDTIDRKVSELQEL 844 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + +SI +HG+MS+I E+ + F G +L+ TT+IE G+D+ +A+ + Sbjct: 845 IPE---------ASIGFVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTL 895 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGF 618 IENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF Sbjct: 896 FIENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGF 955 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 IA DL R G +LG QSG + EL+ LLE IA+++ Sbjct: 956 KIAMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000 >gi|317126795|ref|YP_004093077.1| transcription-repair coupling factor [Bacillus cellulosilyticus DSM 2522] gi|315471743|gb|ADU28346.1| transcription-repair coupling factor [Bacillus cellulosilyticus DSM 2522] Length = 1185 Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 137/396 (34%), Positives = 221/396 (55%), Gaps = 17/396 (4%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G + +G ++ + P+ T+ Q AI++I +DM + M R+L GDVG GKT VAL Sbjct: 603 GFAFSKDGPEQREFESSFPYQETEDQIRAIEEIKKDMELERPMDRLLCGDVGYGKTEVAL 662 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A A+ G Q + P ILAQQHYE I++ Q+ + I+ + +++ ++ + Sbjct: 663 RAAFKAIMDGKQVAFLVPTTILAQQHYETIRERFQDFAVNTSILNRFRSRKEQQETMKGL 722 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 G I++GTH L I + L L+IVDE+ RFGV + K+ + VL +TATPI Sbjct: 723 NKGTVDIVVGTHRLLSKDITFENLGLLIVDEEQRFGVTHKEKIKKLKANVDVLTLTATPI 782 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWIC 489 PRTL ++ LG D+S I P R P++T ++ N + E IER L+ G + +++ Sbjct: 783 PRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNEGLVKEAIER---ELARGGQVFYLY 839 Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549 +++ + V ++ + L +++ +HGRM++ + ESVM F +G +L+ TT Sbjct: 840 NRVD-----DIEVVNDKISMLVPE--ANVRFVHGRMTESELESVMLEFLDGNVDVLVTTT 892 Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTR 607 +IE G+D+ + + +II+NA+ GL+QL+QLRGRVGR ++ + L++ + R Sbjct: 893 IIETGVDIPNVNTLIIDNADKMGLSQLYQLRGRVGRSNRVAYAYFTHQRDKVLTEVAEKR 952 Query: 608 LSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640 L +K TE GF IA DL R G +LG +Q G Sbjct: 953 LQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHG 988 >gi|85711280|ref|ZP_01042339.1| Transcription-repair coupling factor, superfamily II helicase [Idiomarina baltica OS145] gi|85694781|gb|EAQ32720.1| Transcription-repair coupling factor, superfamily II helicase [Idiomarina baltica OS145] Length = 1159 Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 142/398 (35%), Positives = 214/398 (53%), Gaps = 21/398 (5%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G ++ Q+ + PF T Q +AI ++QDM+ + M R++ GDVG GKT VA+ Sbjct: 593 GYGFTIDADDYQRFADSFPFEETTDQLNAINAVVQDMAAPHPMDRLVCGDVGFGKTEVAM 652 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A AV Q +++ P +LAQQHY+ K + + +E+++ ++ + Sbjct: 653 RAAFIAVNDSRQVMVLVPTTLLAQQHYDNFKDRFADWPVRIEVLSRFKTAKQSKQIIADT 712 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 GQ I+IGTH L Q I L L+IVDE+HRFGV+Q+ + + +L +TATPI Sbjct: 713 ESGQVDILIGTHKLLQGDINAKALGLLIVDEEHRFGVRQKEAIKRLRANVDILTLTATPI 772 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWIC 489 PRTL + D+S I PA R +KT + + I E I R + G + Y++ Sbjct: 773 PRTLNMAMNNIRDLSIIATPPARRLAVKTFVREHDNATIREAILRETL---RGGQVYFLH 829 Query: 490 PQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 ++ EK ++V +S+ + HG+M + + E +M F + +L+ Sbjct: 830 NNVDTIEKTAREIEALVPE---------ASVTVAHGQMRERELERIMSDFYHQRFNVLVC 880 Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSY 605 TT+IE GIDV A+ III+ A+H GLAQLHQLRGRVGR + LL HP ++K++ Sbjct: 881 TTIIETGIDVPSANTIIIDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAL 940 Query: 606 TRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 RL + ED GF++A DL+ R GE+LG QSG Sbjct: 941 KRLEAIAQLEDLGAGFMLATHDLEIRGAGELLGDDQSG 978 >gi|296314532|ref|ZP_06864473.1| transcription-repair coupling factor [Neisseria polysaccharea ATCC 43768] gi|296838843|gb|EFH22781.1| transcription-repair coupling factor [Neisseria polysaccharea ATCC 43768] Length = 753 Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 150/428 (35%), Positives = 233/428 (54%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT V L A AV G Sbjct: 190 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVVLRAAFVAVMGGK 249 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F ++ + + N +A + ALE +A G I+IG Sbjct: 250 QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 308 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G Sbjct: 309 THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 368 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ Sbjct: 369 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 422 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ ER +L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 423 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 480 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III A+ FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF Sbjct: 481 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 540 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K + PDL + G Sbjct: 541 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 596 Query: 679 QSIRILLY 686 + I L+ Sbjct: 597 ITTEIKLH 604 >gi|302669664|ref|YP_003829624.1| transcription-repair coupling factor Mfd [Butyrivibrio proteoclasticus B316] gi|302394137|gb|ADL33042.1| transcription-repair coupling factor Mfd [Butyrivibrio proteoclasticus B316] Length = 1191 Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 147/453 (32%), Positives = 241/453 (53%), Gaps = 21/453 (4%) Query: 197 KSFPSIAEAFNIIHNPR--KAKDFEWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGI 253 + + S + H P+ K EW+ + ++ + A +E+ + L R++ K Sbjct: 560 QKYASGGDDSETTHKPKLNKLGSVEWSHTKSKVKAAVEEVAQDLVELYAKRQEAKGHQFS 619 Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313 P V Q+ P+ T Q +AI+D +DM M R++ GDVG GKT +A+ A Sbjct: 620 PDTV---WQQEFEDAFPYQETDDQLTAIEDTKRDMESGIIMDRLVCGDVGFGKTEIAIRA 676 Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373 AV+ G Q ++ P ILAQQHY + ++ + V++++ A ++K + + Sbjct: 677 AFKAVQDGKQVAVLVPTTILAQQHYNTFSERMRDFPVRVDLMSRFRTAAEQKKTIVDLKK 736 Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433 G I+IGTH L +QY L L+IVDE+ RFGV + KL VL ++ATPIPR Sbjct: 737 GLVDIVIGTHRLLSKDVQYKDLGLLIVDEEQRFGVTHKEKLKTLKENIDVLTLSATPIPR 796 Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQI 492 TL ++ +G ++S + E P R PI+T ++ N DE+I E + L+ + Y++ ++ Sbjct: 797 TLHMSLVGIREMSVLEEAPNDRMPIQTYVMEYN--DELIREAIARELARNGQVYYVYNRV 854 Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552 + V + L +++A HG+M + + E +M F +GT +L++TT+IE Sbjct: 855 -----NTIADVAAQIQKLVPE--ANVAFAHGQMKESELERIMYDFIDGTIDVLVSTTIIE 907 Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV 610 G+D+ + + +II +++ GL+QL+QLRGRVGR + L+Y L + + RLS Sbjct: 908 TGLDIPNVNTMIIHDSDKMGLSQLYQLRGRVGRSNRTAYAFLMYKKDKMLKEVAEKRLSA 967 Query: 611 LKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 ++ D GF IA DL+ R G +LG KQSG Sbjct: 968 IREFTDLGSGFKIAMRDLEIRGAGSLLGRKQSG 1000 >gi|283768938|ref|ZP_06341847.1| transcription-repair-coupling factor [Staphylococcus aureus subsp. aureus H19] gi|283461119|gb|EFC08205.1| transcription-repair-coupling factor [Staphylococcus aureus subsp. aureus H19] Length = 1168 Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 150/418 (35%), Positives = 226/418 (54%), Gaps = 23/418 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ ++ E + G I++GTH L Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE+A+ FGL+QL+QLRGRVGR I L HP L++ + RL +K TE GF Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676 IA DL R G +LG +Q G +L+ +LE A + + I + D+ V Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHGFID--TVGFDLYSQMLEEAVNEKRGIKEPESDVPEV 1017 >gi|254786005|ref|YP_003073434.1| transcription-repair coupling factor [Teredinibacter turnerae T7901] gi|237683594|gb|ACR10858.1| transcription-repair coupling factor [Teredinibacter turnerae T7901] Length = 1157 Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 140/381 (36%), Positives = 211/381 (55%), Gaps = 21/381 (5%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 PF T Q+SAI+ + DM M R++ GDVG GKT VA+ A AV+ Q ++ Sbjct: 608 FPFEETPDQQSAIRAVRDDMLSAQPMDRLVCGDVGFGKTEVAMRAAFIAVQNSKQVAVLV 667 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQH++ K + + +E+++ Q +R+ G I+IGTH L Sbjct: 668 PTTLLAQQHFDNFKDRFADWPVNIEVVSRFRSQKELTNVQQRLEQGSVDILIGTHKLILG 727 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 +Y L LVI+DE+HRFGV+Q+ L T +L +TATPIPRTL ++ G D+S I Sbjct: 728 DFKYPNLGLVIIDEEHRFGVRQKEALKALRTEVDILTLTATPIPRTLNMSMNGIRDLSII 787 Query: 449 TEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504 PA R +KT + N I E I L+ +L G + Y++ +++ +++ +++V Sbjct: 788 ATPPAKRLSVKTFVRESDDNLIKEAI--LREIL-RGGQVYFLHNEVKSIDRRAQEIQALV 844 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + I I HG+M + + ESVM F + +L++TT+IE GIDV A+ I+ Sbjct: 845 PE---------ARIGIGHGQMRERELESVMSDFYHKRFNILVSTTIIETGIDVPTANTIV 895 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619 IE A+ FGLAQLHQLRGRVGR + L+ ++ ++ RL + +D GF Sbjct: 896 IERADKFGLAQLHQLRGRVGRSHHQAYAYLMTPNKKAMTNDALKRLEAIAEAQDLGAGFT 955 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG +QSG Sbjct: 956 LASHDLEIRGAGELLGDEQSG 976 >gi|296125668|ref|YP_003632920.1| transcription-repair coupling factor [Brachyspira murdochii DSM 12563] gi|296017484|gb|ADG70721.1| transcription-repair coupling factor [Brachyspira murdochii DSM 12563] Length = 1244 Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 137/401 (34%), Positives = 216/401 (53%), Gaps = 19/401 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T Q AI DI +DM M R++ GDVG GKT VA A+ A+ AG Q I+ P Sbjct: 644 YEETADQLRAINDIKEDMESGKMMDRLVCGDVGFGKTEVAFRAVFKAIMAGKQCAILCPT 703 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 IL+QQHY KK ++ I +E++ + ++ E + +G +++GTH L + I Sbjct: 704 TILSQQHYNNAKKRFEDFPIRIEVLNRFVTSKQAKRNKELLKNGSCDLVVGTHMLLSNDI 763 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L L+++DE+ RFGV+ + L + VL ++ATPIPRTL + G DIS I Sbjct: 764 EFKNLGLIVIDEEQRFGVKHKEALKRLRLETDVLTLSATPIPRTLNMALTGIRDISIIET 823 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P R P+KT + + + V+ ++ L + +++ +I+ +E F + Sbjct: 824 PPLNRIPVKTFVTEFSE-EAVVNAIERELKRDGQVFYLYNRID---------TIESFALM 873 Query: 511 HEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 + + I + HGRM+ E +M+ F N +L++TT+IE GID+ +A+ I+I+NA Sbjct: 874 IKKLCPKARICVAHGRMTGHQLEKIMEDFINHKYDILVSTTIIENGIDIPNANTILIDNA 933 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623 GL++L+QLRGRVGR + + + Y L++ +Y RL + D GF IA Sbjct: 934 NRLGLSELYQLRGRVGRSDREAYAYMFYPSDLALTEVAYKRLEAISEHTDLGAGFKIAMR 993 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 DL+ R G ILG +QSGM EL+ +LE A + K Sbjct: 994 DLEIRGAGNILGKEQSGM--IYQVGYELYTQMLEEATNEYK 1032 >gi|207743032|ref|YP_002259424.1| transcription-repair coupling factor protein [Ralstonia solanacearum IPO1609] gi|206594429|emb|CAQ61356.1| transcription-repair coupling factor protein [Ralstonia solanacearum IPO1609] Length = 1147 Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 147/415 (35%), Positives = 217/415 (52%), Gaps = 23/415 (5%) Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 A ++ L R+ ++ P+ + + F T Q +AI ++ DM+ M Sbjct: 570 AAELLNLYARRALRQGFAFPLTPNDY--EAFAESFGFDETPDQAAAITAVIADMTSGKPM 627 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R++ GDVG GKT VAL A AV G Q ++AP +LA+QHY+ + + + + Sbjct: 628 DRLVCGDVGFGKTEVALRAAFVAVMGGKQVAMLAPTTLLAEQHYQTLADRFADWPVRIAE 687 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 I+ + A+E I G I+IGTH L +Q+ +L LVI+DE+HRFGV+Q+ L Sbjct: 688 ISRFKNKKEIDAAIEAINAGTIDIVIGTHKLLSPDVQFDRLGLVIIDEEHRFGVRQKEAL 747 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 VL +TATPIPRTL + G D S I P R IKT + R ++ + R Sbjct: 748 KTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTF---VRREEDSVLR 804 Query: 475 LKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530 ++ L G + Y++ ++E E K + +V + +A+ HG+M + + Sbjct: 805 EAILRELKRGGQVYFLHNEVETIENKRAKLEELVPE---------ARVAVAHGQMHEREL 855 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 E VM F +L+ TT+IE GIDV A+ I+I A+ FGLAQLHQLRGRVGR + Sbjct: 856 ERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRADKFGLAQLHQLRGRVGRSHHQA 915 Query: 591 SCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 LL H L+K + RL ++ E+ GF +A DL+ R GE+LG KQSG Sbjct: 916 YAYLLVHDAEGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDKQSG 970 >gi|319654942|ref|ZP_08009016.1| transcription-repair coupling factor [Bacillus sp. 2_A_57_CT2] gi|317393367|gb|EFV74131.1| transcription-repair coupling factor [Bacillus sp. 2_A_57_CT2] Length = 1179 Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 138/398 (34%), Positives = 222/398 (55%), Gaps = 21/398 (5%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G + +G + ++ P+ T+ Q +I +I +DM ++ M R+L GDVG GKT VA+ Sbjct: 602 GYAFSPDGDMQREFEAAFPYQETEDQIRSIHEIKKDMERERPMDRLLCGDVGYGKTEVAI 661 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A A+ G Q I+ P ILAQQHYE +++ Q+ I + +++ + + + L+ + Sbjct: 662 RAAFKAIADGKQVAILVPTTILAQQHYETMRERFQDYPIEIGLLSRFRSKKQQTETLKGL 721 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 G +++GTH + IQY +L L+I+DE+ RFGV + K+ Q T VL +TATPI Sbjct: 722 KAGTIDVVVGTHRILSKDIQYRELGLLIIDEEQRFGVTHKEKIKQLKTNVDVLTLTATPI 781 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWIC 489 PRTL ++ LG D+S I P R P++T ++ N + E IER L+ + Y++ Sbjct: 782 PRTLHMSMLGVRDLSVIETPPENRFPVQTYVMEYNGALVREAIER---ELARDGQVYFLY 838 Query: 490 PQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 ++E E+K +V + + HG+M++ + ESVM SF G +L++ Sbjct: 839 NRVEDIERKAEEISMLVP---------DARVTYAHGKMTENELESVMLSFLEGESDVLVS 889 Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSY 605 TT+IE G+D+ + + +I+ +A+ GL+QL+QLRGRVGR ++ Y L++ + Sbjct: 890 TTIIETGVDIPNVNTLIVHDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAE 949 Query: 606 TRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640 RL +K TE GF IA DL R G +LG +Q G Sbjct: 950 KRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHG 987 >gi|311028986|ref|ZP_07707076.1| transcription-repair coupling factor [Bacillus sp. m3-13] gi|311032274|ref|ZP_07710364.1| transcription-repair coupling factor [Bacillus sp. m3-13] Length = 1178 Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 138/399 (34%), Positives = 222/399 (55%), Gaps = 21/399 (5%) Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310 +G + +G++ ++ P+ T+ Q +I +I DM + M R+L GDVG GKT VA Sbjct: 602 VGHAFSPDGEMQREFEATFPYQETEDQLRSIHEIKLDMEKTRPMDRLLCGDVGYGKTEVA 661 Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370 + A A+ G Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ Sbjct: 662 IRAAFKAITDGKQVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRSRKQQTETMKG 721 Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430 + +G I++GTH L I+Y L L+I+DE+ RFGV + K+ Q VL +TATP Sbjct: 722 LGNGTVDIVVGTHRLLSKDIKYKDLGLLIIDEEQRFGVTHKEKIKQLKANIDVLTLTATP 781 Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWI 488 IPRTL ++ LG D+S I P R P++T ++ N + E IER L+ G + Y++ Sbjct: 782 IPRTLHMSMLGVRDLSVIETPPENRFPVQTYVMEYNGNLVKEAIER---ELARGGQIYFL 838 Query: 489 CPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 ++E E+K +V + + HG+M++ + ESVM F G ++L+ Sbjct: 839 YNRVEDIERKADEISMLVPE---------ARVTYAHGKMTENELESVMIQFLEGEAEVLV 889 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNS 604 +TT+IE G+D+ + + +I+ +A+ GL+QL+QLRGRVGR ++ Y L++ + Sbjct: 890 STTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVA 949 Query: 605 YTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640 RL +K TE GF IA DL R G +LG +Q G Sbjct: 950 EKRLQSIKEFTELGSGFKIAMRDLSIRGAGNLLGAQQHG 988 >gi|331265444|ref|YP_004325074.1| transcription-repair coupling factor [Streptococcus oralis Uo5] gi|326682116|emb|CBY99732.1| transcription-repair coupling factor [Streptococcus oralis Uo5] Length = 1167 Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 149/407 (36%), Positives = 230/407 (56%), Gaps = 27/407 (6%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 P+ T Q +I++I +DM + M R+L GDVG GKT VA+ A AV Q V++ Sbjct: 609 FPYVETDDQLRSIEEIKRDMQDSHPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLV 668 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQHY K+ QN + +++++ + + + LE++ +GQ I+IGTH + Sbjct: 669 PTTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQAETLEKLKNGQIDILIGTHRVLSK 728 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 729 DVVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVI 788 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSV 503 P R P++T ++ N D VI VL E G + Y++ +++ ++K S + + Sbjct: 789 ETPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVDTIDRKVSELQEL 844 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + +SI +HG+MS+I E+ + F G +L+ TT+IE G+D+ +A+ + Sbjct: 845 IPE---------ASIGFVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTL 895 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGF 618 IENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF Sbjct: 896 FIENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGF 955 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 IA DL R G +LG QSG + EL+ LLE IA+++ Sbjct: 956 KIAMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000 >gi|126729844|ref|ZP_01745657.1| transcription-repair coupling factor [Sagittula stellata E-37] gi|126709963|gb|EBA09016.1| transcription-repair coupling factor [Sagittula stellata E-37] Length = 1159 Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 146/399 (36%), Positives = 225/399 (56%), Gaps = 23/399 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+S T Q +AI+D++ D+ M R++ GDVG GKT VA+ A A +G Q ++AP Sbjct: 601 PYSETDDQLAAIEDVMDDLQSGQPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVAVIAP 660 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHY+ + + + V ++ +P K E IA G I IGTHAL + Sbjct: 661 TTLLARQHYKSFAERFRGFPLEVAALSRFVPAKQAAKTREGIAKGTVDIAIGTHALLAKT 720 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ L L+I+DE+ RFGVQ + +L Q + HVL +TATPIPRTL L+ G D+S I Sbjct: 721 IRFQNLGLLIIDEEQRFGVQHKERLKQLRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIG 780 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R I+T ++ D V R + +L E G +++ + P+I + E +E Sbjct: 781 TPPVDRLSIRTY---VSEFDPVTVR-EALLREHYRGGQSFIVVPKITDLPE------IEE 830 Query: 507 FNSLHEHFTSSIAII-HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 F L E ++ HG+M+ D + M++F +G +L+ATT++E G+D+ A+ +I+ Sbjct: 831 F--LKEQVPECTYVVAHGQMAAGDLDERMNAFYDGKYDVLVATTIVESGLDIPTANTMIV 888 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLI 620 A+ FGL+QL+Q+RGRVGR + + C L P L+ + RL VL + GF + Sbjct: 889 HRADMFGLSQLYQIRGRVGRSKTRAYCYLTTKPRAKLTATAEKRLRVLGAIDMLGAGFSL 948 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 A +DL R G +LG +QSG + + EL+ S+LE A Sbjct: 949 ASQDLDIRGAGNLLGEEQSGQMRDV--GYELYQSMLEEA 985 >gi|172038623|ref|YP_001805124.1| transcription-repair coupling factor [Cyanothece sp. ATCC 51142] gi|171700077|gb|ACB53058.1| transcription-repair coupling factor [Cyanothece sp. ATCC 51142] Length = 1159 Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 138/400 (34%), Positives = 225/400 (56%), Gaps = 18/400 (4%) Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 K G ++ Q++ + P+ PT Q AI+D+ D+ M R++ GDVG GKT Sbjct: 588 KNTGFTYPLDTPWQQELEDSFPYQPTPDQLKAIQDVKIDLESDRPMDRLVCGDVGFGKTE 647 Query: 309 VALIAMAAAVEAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 VA+ A+ AV +G Q +AP IL QQHY +K+ I + ++ + +++ Sbjct: 648 VAVRAIFKAVTSGHKQVAFLAPTTILTQQHYHTLKERFAPYPINIGLLNRFRTTSEKKEI 707 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 ++R+A G+ I++GT L S+++ L L++VDE+ RFGV Q+ K+ + + VL +T Sbjct: 708 IQRLATGELDIVVGTQQLLGKSVKFKDLGLLVVDEEQRFGVNQKEKIKEIKSHVDVLTLT 767 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL ++ G ++S IT P R+PIKT + N D V ++ L G + ++ Sbjct: 768 ATPIPRTLYMSLSGIREMSLITTPPPSRRPIKTHLSRYNP-DVVRTAIRNELDRGGQVFY 826 Query: 488 ICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545 + P++E E+ + +++V ++ +AI HG+M + E M SF NG +L Sbjct: 827 VVPRVEGIEEVAAQIKTMVP---------SARMAIAHGQMDVNELEITMLSFNNGDADIL 877 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKN 603 + TT++E G+D+ + II+E+A+ FGLAQL+QLRGRVGR + LLY L++ Sbjct: 878 VCTTIVESGLDIPRVNTIIVEDAQKFGLAQLYQLRGRVGRSGIQAHAWLLYPSKAQLTET 937 Query: 604 SYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640 + RL L+ G+ +A D++ R G +LG +QSG Sbjct: 938 ARQRLRALQEFSQLGSGYQLATRDMEIRGVGNLLGAEQSG 977 >gi|282915821|ref|ZP_06323589.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus D139] gi|282320312|gb|EFB50654.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus D139] Length = 1168 Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 150/418 (35%), Positives = 226/418 (54%), Gaps = 23/418 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ ++ E + G I++GTH L Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE+A+ FGL+QL+QLRGRVGR I L HP L++ + RL +K TE GF Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676 IA DL R G +LG +Q G +L+ +LE A + + I + D+ V Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHGFID--TVGFDLYSQMLEEAVNEKRGIKEPESDVPEV 1017 >gi|322388485|ref|ZP_08062088.1| transcription-repair coupling factor [Streptococcus infantis ATCC 700779] gi|321140798|gb|EFX36300.1| transcription-repair coupling factor [Streptococcus infantis ATCC 700779] Length = 1167 Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 151/407 (37%), Positives = 229/407 (56%), Gaps = 27/407 (6%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 P+ T+ Q +I++I +DM M R+L GDVG GKT VA+ A AV Q V++ Sbjct: 611 FPYVETEDQLRSIEEIKKDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNNHKQVVVLV 670 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQHY K+ + + V++++ + + + LE++ GQ I+IGTH + Sbjct: 671 PTTVLAQQHYSNFKERFEQFAVNVDVLSRFRSKKEQTETLEKLKKGQVDILIGTHRVLSK 730 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 +++ L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 731 DVEFSDLGLIIIDEEQRFGVKHKEALKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSVI 790 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSV 503 P R P++T ++ N D VI VL E G + Y++ +++ EKK S + + Sbjct: 791 ETPPTNRYPVQTYVLEQN--DRVIR--DAVLREIDRGGQVYYLYNKVDTIEKKVSELQEL 846 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + +SI +HG+MS+I E+ + F G +L+ TT+IE G+D+ +A+ + Sbjct: 847 IPE---------ASIGFVHGQMSEIRLENTLLDFIEGEYDILVTTTIIETGVDIPNANTL 897 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGF 618 IENA+H GL+ L+QLRGRVGR I+ L+Y P L++ S RL +K TE GF Sbjct: 898 FIENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKSLTEVSEKRLEAIKGFTELGSGF 957 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 IA DL R G +LG QSG + EL+ LLE IA+K+ Sbjct: 958 KIAMRDLSIRGAGNLLGSSQSGFIDSV--GFELYSQLLEEAIAKKNG 1002 >gi|313635134|gb|EFS01462.1| transcription-repair coupling factor [Listeria seeligeri FSL N1-067] Length = 746 Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 144/430 (33%), Positives = 234/430 (54%), Gaps = 21/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW ++ A + +A + L ++ +K G + + ++ ++ P+ T Q Sbjct: 141 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSPDEEMQREFEDAFPYQETDDQL 198 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I +I +DM + M R+L GDVG GKT VAL A A+ G Q + P ILAQQH+ Sbjct: 199 RSIAEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 258 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E +K+ Q I + +++ + + + L+ + G I++GTH L ++Y+ L L+ Sbjct: 259 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKSGTVDIVVGTHRLLSKDVEYHDLGLL 318 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV + K+ Q + VL +TATPIPRTL ++ LG D+S I PA R P+ Sbjct: 319 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 378 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T + N + E IER L+ + Y++ ++E ++ ++ + + Sbjct: 379 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------TITQKADEISAMVPD 427 Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +AI HG+M + + ESV+ SF G +L+ TT+IE G+D+ + + + +++A+ GL+Q Sbjct: 428 ARVAIAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 487 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGRVGR I+ +Y L + + RLS +K TE GF IA DL R Sbjct: 488 LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 547 Query: 631 GEILGIKQSG 640 G ILG +Q G Sbjct: 548 GNILGAQQHG 557 >gi|315612154|ref|ZP_07887069.1| transcription-repair coupling factor [Streptococcus sanguinis ATCC 49296] gi|315315715|gb|EFU63752.1| transcription-repair coupling factor [Streptococcus sanguinis ATCC 49296] Length = 1167 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 149/406 (36%), Positives = 230/406 (56%), Gaps = 25/406 (6%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 P+ T Q +I++I +DM + M R+L GDVG GKT VA+ A AV Q V++ Sbjct: 609 FPYVETDDQLRSIEEIKRDMQDSHPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLV 668 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQHY K+ QN + +++++ + + + LE++ +GQ I+IGTH + Sbjct: 669 PTTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQAETLEKLKNGQVDILIGTHRVLSK 728 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 729 DVVFSDLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVI 788 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505 P R P++T ++ N D VI VL E G + Y++ +++ ++ + Sbjct: 789 ETPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQIYYLYNKVD--------TIDQ 836 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + + L E +SI +HG+MS+I E+ + F G +L+ TT+IE G+D+ +A+ + Sbjct: 837 KVSELQELIPEASIGYVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLF 896 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFL 619 IENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF Sbjct: 897 IENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFK 956 Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 IA DL R G +LG QSG + EL+ LLE IA+++ Sbjct: 957 IAMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000 >gi|207724177|ref|YP_002254575.1| transcription-repair coupling factor protein [Ralstonia solanacearum MolK2] gi|206589387|emb|CAQ36349.1| transcription-repair coupling factor protein [Ralstonia solanacearum MolK2] Length = 1147 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 147/415 (35%), Positives = 217/415 (52%), Gaps = 23/415 (5%) Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 A ++ L R+ ++ P+ + + F T Q +AI ++ DM+ M Sbjct: 570 AAELLNLYARRALRQGFAFPLTPNDY--EAFAESFGFDETPDQAAAITAVIADMTSGKPM 627 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R++ GDVG GKT VAL A AV G Q ++AP +LA+QHY+ + + + + Sbjct: 628 DRLVCGDVGFGKTEVALRAAFVAVMGGKQVAMLAPTTLLAEQHYQTLADRFADWPVRIAE 687 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 I+ + A+E I G I+IGTH L +Q+ +L LVI+DE+HRFGV+Q+ L Sbjct: 688 ISRFKNKKEIDAAIEAINAGTIDIVIGTHKLLSPDVQFDRLGLVIIDEEHRFGVRQKEAL 747 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 VL +TATPIPRTL + G D S I P R IKT + R ++ + R Sbjct: 748 KTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTF---VRREEDSVLR 804 Query: 475 LKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530 ++ L G + Y++ ++E E K + +V + +A+ HG+M + + Sbjct: 805 EAILRELKRGGQVYFLHNEVETIENKRAKLEELVPE---------ARVAVAHGQMHEREL 855 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 E VM F +L+ TT+IE GIDV A+ I+I A+ FGLAQLHQLRGRVGR + Sbjct: 856 ERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRADKFGLAQLHQLRGRVGRSHHQA 915 Query: 591 SCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 LL H L+K + RL ++ E+ GF +A DL+ R GE+LG KQSG Sbjct: 916 YAYLLVHDAEGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDKQSG 970 >gi|187923864|ref|YP_001895506.1| transcription-repair coupling factor [Burkholderia phytofirmans PsJN] gi|187715058|gb|ACD16282.1| transcription-repair coupling factor [Burkholderia phytofirmans PsJN] Length = 1160 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 164/474 (34%), Positives = 241/474 (50%), Gaps = 21/474 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W R+ A ++ L R+ ++ G +E K K + F T Q Sbjct: 554 QWEKAKRKAAQQIRDTAAELLNLYARRALRQ--GHAFALEPKDYVKFAESFGFEETPDQA 611 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q +++P +LA+QH Sbjct: 612 AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHT 671 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + + ++ A+++I G I+IGTH L +Q+ +L LV Sbjct: 672 QTFSDRFSDWPVRIAELSRFKSTKEVSAAIQQINEGTVDIVIGTHKLLSSDVQFKRLGLV 731 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+HRFGV+Q+ L VL +TATPIPRTL + G D S I P R I Sbjct: 732 IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 791 Query: 459 KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517 KT + D VI E + L G + Y++ ++E + N R ++E + Sbjct: 792 KTFVR--REEDSVIREAMLRELKRGGQVYFLHNEVETIE--NRRQMLEALVP-----EAR 842 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 IA+ HG+M + + E VM F +L+ TT+IE GIDV A+ I+I A+ FGLAQLH Sbjct: 843 IAVAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTILIHRADKFGLAQLH 902 Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632 QLRGRVGR + LL H P L+K + RL ++ E+ GF +A DL+ R GE Sbjct: 903 QLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGE 962 Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686 +LG KQSG + Q L+ +L A K K ++PDLT+ + I L+ Sbjct: 963 VLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKE--GKEPDLTAPLAATTEINLH 1012 >gi|229816037|ref|ZP_04446358.1| hypothetical protein COLINT_03090 [Collinsella intestinalis DSM 13280] gi|229808351|gb|EEP44132.1| hypothetical protein COLINT_03090 [Collinsella intestinalis DSM 13280] Length = 1192 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 136/378 (35%), Positives = 206/378 (54%), Gaps = 13/378 (3%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T+ Q AI DI DM M R+L GDVG GKT VAL A V+ G Q +++ Sbjct: 629 SFPYDETRDQLDAIADIKSDMESTKPMDRLLCGDVGFGKTEVALRAAFKCVDGGRQVMVL 688 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + VE+++ A +R+AL A G+ ++IGTH L Sbjct: 689 CPTTILAQQHYETFFERFAPFGVEVEVLSRFRTPAQQRRALAAFAEGKVDVLIGTHRLLS 748 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + ++L LVI+DE+ RFGVQ + +L VL ++ATPIPRT+ + G D+S Sbjct: 749 ADVNPHELGLVIIDEEQRFGVQHKEQLKNMREQIDVLTLSATPIPRTMQMAMSGVRDMSL 808 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 IT P GR+P+ + + D V +++ + G + Y++ +++ VER Sbjct: 809 ITTPPTGRRPVAVHVGEYDP-DVVSAAIRLEIGRGGQVYYVSNRVK-----TIDDAVERV 862 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 L + I + HG+MS + E VM F +LIATT++E GID A+ +IIE+ Sbjct: 863 --LEAAPEARIGVAHGKMSPREVEDVMVQFATKKIDVLIATTIVESGIDNSSANTLIIED 920 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAE 622 ++ GLAQL+QL+GRVGR + ++ PL++ + RL+ L +D G IA Sbjct: 921 SQRLGLAQLYQLKGRVGRSATQAYAYFMFPGELPLTEEATARLTALSEFQDLGSGMRIAM 980 Query: 623 EDLKQRKEGEILGIKQSG 640 DL+ R G ++G +Q G Sbjct: 981 RDLEIRGAGSLVGAEQHG 998 >gi|254670469|emb|CBA06145.1| transcription-repair coupling factor [Neisseria meningitidis alpha153] Length = 1286 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 150/428 (35%), Positives = 233/428 (54%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Sbjct: 731 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 790 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F ++ + + N +A + LE +A G I+IG Sbjct: 791 QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAVLEGMADGTVDIVIG 849 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G Sbjct: 850 THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 909 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ Sbjct: 910 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 963 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ ER +L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 964 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 1021 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III A+ FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF Sbjct: 1022 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1081 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K + PDL + G Sbjct: 1082 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1137 Query: 679 QSIRILLY 686 + I L+ Sbjct: 1138 ITTEIKLH 1145 >gi|312623038|ref|YP_004024651.1| transcription-repair coupling factor [Caldicellulosiruptor kronotskyensis 2002] gi|312203505|gb|ADQ46832.1| transcription-repair coupling factor [Caldicellulosiruptor kronotskyensis 2002] Length = 1141 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 142/429 (33%), Positives = 234/429 (54%), Gaps = 18/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW ++ EL+A + L ++Q K G + + ++ P++ T+ Q Sbjct: 554 EWQKQKQKVRKSLELVAKDLVELYAKRQLGK--GFKFSKDTLWQKEFEEKFPYTETEGQL 611 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 AI++I +DM + M RIL GDVG GKT VA+ A AV Q ++ P ILAQQHY Sbjct: 612 QAIEEIKRDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVLVPTTILAQQHY 671 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 ++ + +E+++ + ++K ++ + G I+IGTH L +++ L L+ Sbjct: 672 MTFSARMKDFPVTIEVLSRLKNETQQKKIIKGLKEGTIDIVIGTHRLLSSDVKFKDLGLL 731 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+H+FGV+ + K+ + T VL +TATPIPRTL + LG D+S I + P R P+ Sbjct: 732 IIDEEHKFGVEAKEKIKKLKTNVDVLTLTATPIPRTLNMALLGIRDLSVIEDPPEDRFPV 791 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T ++ N I E I LK + S G + +++ ++++ +E V + L + Sbjct: 792 QTFVLEYNERIIKEAI--LKEI-SRGGQVFYLYNRVKDIQE-----VAAKLQKLVGD-SV 842 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 IA HG+MS+ + E V+ F G +L+ TT+IE G+D+ + + +I+E+++ GLAQL Sbjct: 843 KIACAHGKMSEEELEEVLIDFIEGRYDVLVCTTIIESGVDMPNVNTLIVEDSDRLGLAQL 902 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 +QLRGRVGR ++ + LS+ + RL+ +K + GF IA DL+ R G Sbjct: 903 YQLRGRVGRSSRLAYAYFTFRKDKVLSEQAQKRLAAIKEFTELGAGFKIAMRDLEIRGAG 962 Query: 632 EILGIKQSG 640 +LG Q G Sbjct: 963 SLLGKLQHG 971 >gi|94971575|ref|YP_593623.1| transcription-repair coupling factor [Candidatus Koribacter versatilis Ellin345] gi|94553625|gb|ABF43549.1| transcription-repair coupling factor [Candidatus Koribacter versatilis Ellin345] Length = 1182 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 170/502 (33%), Positives = 264/502 (52%), Gaps = 31/502 (6%) Query: 192 DLLQK-KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250 DL+QK +S + A N + + AK A + +A DELL L RK K Sbjct: 560 DLIQKYRSSEGVKPALNRLGTQQWAKTKARVKKAMKDMA-DELLK----LYAARKTAK-- 612 Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310 G + G+ ++ F+ T+ QE+AI+D+ QDM M R+L GDVG GKT V+ Sbjct: 613 -GHAFSATGQFEREFDDAFEFNETEDQENAIRDVRQDMESDTPMDRLLCGDVGYGKTEVS 671 Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370 + A AV Q ++AP +LA QH+E K+ + VE+I+ +++ +ER Sbjct: 672 MRAAFKAVSDNKQVAVLAPTTVLAFQHFETFKRRFSAFPVKVEMISRFRTAKQQKEIVER 731 Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430 + +GQ I+IGTH + I + L LV++DE+ RFGV+ + +L Q VL M+ATP Sbjct: 732 VNNGQVDILIGTHRVLSKDIHFPDLGLVVIDEEQRFGVRHKERLKQLRKEVDVLTMSATP 791 Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWI 488 IPRTL ++ LG D+S I P R I+TV+ + I IE+ L G + Y++ Sbjct: 792 IPRTLHMSLLGLRDMSVIETPPKDRMAIQTVVAKWDEKLIKSAIEQ---ELDRGGQIYFV 848 Query: 489 CPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 ++E S+ E + +HE + I + HG+M + E +M F +L+A Sbjct: 849 HNRVE--------SIYEISDKIHELVPKAKILVGHGQMGEGQLEDIMLKFMRHDADILVA 900 Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSY 605 TT+IE G+D+ + +I+ A+ GL++L+QLRGRVGR + LL P L++ + Sbjct: 901 TTIIENGLDIPLCNTMIVNRADRHGLSELYQLRGRVGRSNRRAYAYLLVPPDRELTELAR 960 Query: 606 TRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662 RL+ LK D GF IA DL+ R G +LG +QSG + EL+ ++LE ++ Sbjct: 961 RRLAALKEFSDLGAGFKIAALDLELRGAGNLLGGEQSG--QIEAVGFELYTTMLERTVRE 1018 Query: 663 AKHILTQDPDLTSVR-GQSIRI 683 K + ++ T + G +IRI Sbjct: 1019 MKGEVQEEQAETQLNLGLNIRI 1040 >gi|294496926|ref|YP_003560626.1| transcription-repair coupling factor [Bacillus megaterium QM B1551] gi|294346863|gb|ADE67192.1| transcription-repair coupling factor [Bacillus megaterium QM B1551] Length = 1176 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 135/398 (33%), Positives = 222/398 (55%), Gaps = 21/398 (5%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G + +G + ++ P+ T+ Q ++++I +DM + M R+L GDVG GKT VA+ Sbjct: 603 GYAFSPDGDLQREFETAFPYQETEDQLRSVQEIKKDMEHERPMDRLLCGDVGYGKTEVAI 662 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A AV G Q I+ P ILAQQHYE I++ Q+ I + +++ + +++ ++ + Sbjct: 663 RAAFKAVTDGKQVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRSRKQQQETIKGL 722 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 +G ++IGTH L + Y L L+++DE+ RFGV + K+ Q VL +TATPI Sbjct: 723 KNGTVDVVIGTHRLLSKDVIYKDLGLLVIDEEQRFGVTHKEKIKQMKANVDVLTLTATPI 782 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWIC 489 PRTL ++ LG D+S I P R P++T ++ N + E IER L+ + Y++ Sbjct: 783 PRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPVLVREAIER---ELARDGQVYFLY 839 Query: 490 PQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 ++E E+K +V + + HG+M++ + E+V+ SF G ++++ Sbjct: 840 NRVEDIERKAEEISMLVP---------DARVTYAHGKMNETELEAVILSFLEGEYDVIVS 890 Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSY 605 TT+IE G+D+ + + +I+ NA+ GL+QL+QLRGRVGR ++ YH L++ + Sbjct: 891 TTIIETGVDIPNVNTLIVNNADKMGLSQLYQLRGRVGRSNRVAYAYFTYHKDKVLTEVAE 950 Query: 606 TRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640 RL +K TE GF IA DL R G +LG +Q G Sbjct: 951 KRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAQQHG 988 >gi|307711221|ref|ZP_07647643.1| transcription-repair coupling factor [Streptococcus mitis SK321] gi|307617183|gb|EFN96361.1| transcription-repair coupling factor [Streptococcus mitis SK321] Length = 1167 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 153/431 (35%), Positives = 234/431 (54%), Gaps = 26/431 (6%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 I L R Q K G + + + P+ T Q ++++I +DM M R+ Sbjct: 581 IKLYSERSQLK---GFAFSADDEDQHAFDDAFPYVETDDQLRSVEEIKRDMQASQPMDRL 637 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 L GDVG GKT VA+ A AV Q V++ P +LAQQHY K+ QN + +++++ Sbjct: 638 LVGDVGFGKTEVAMRAAFKAVNDHKQVVVLVPTTVLAQQHYTNFKERFQNFAVNIDVLSR 697 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 + + + LE++ +GQ I+IGTH + + + L L+I+DE+ RFGV+ + L + Sbjct: 698 FRSKKEQTETLEKLKNGQVDILIGTHRILSKDVVFADLGLMIIDEEQRFGVKHKETLKEL 757 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N D VI Sbjct: 758 KKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKN--DNVIR--DA 813 Query: 478 VLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESV 533 VL E G + Y++ +++ ++ ++ + L E +SI +HG+MS+I E+ Sbjct: 814 VLREMERGGQVYYLYNKVD--------TIDQKVSELQELIPEASIGYVHGQMSEIQLENT 865 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 + F G +L+ TT+IE G+D+ +A+ + IENA+H GL+ L+QLRGRVGR I+ Sbjct: 866 LLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGLSTLYQLRGRVGRSNRIAYAY 925 Query: 594 LLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648 L+Y P +S+ S RL +K TE GF IA DL R G +LG QSG + Sbjct: 926 LMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNLLGKSQSGFIDSV--G 983 Query: 649 PELHDSLLEIA 659 EL+ LLE A Sbjct: 984 FELYSQLLEEA 994 >gi|15923493|ref|NP_371027.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus Mu50] gi|15926180|ref|NP_373713.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus N315] gi|156978831|ref|YP_001441090.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus Mu3] gi|253315228|ref|ZP_04838441.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255005296|ref|ZP_05143897.2| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus Mu50-omega] gi|282895111|ref|ZP_06303331.1| transcription-repair coupling factor [Staphylococcus aureus A8117] gi|81832560|sp|Q7A7B2|MFD_STAAN RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|81855990|sp|Q99WA0|MFD_STAAM RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|13700393|dbj|BAB41691.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus N315] gi|14246271|dbj|BAB56665.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus Mu50] gi|156720966|dbj|BAF77383.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus Mu3] gi|282762529|gb|EFC02669.1| transcription-repair coupling factor [Staphylococcus aureus A8117] Length = 1168 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ ++ E + G I++GTH L Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE+A+ FGL+QL+QLRGRVGR I L HP L++ + RL +K TE GF Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 IA DL R G +LG +Q G Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983 >gi|258429620|ref|ZP_05688294.1| transcription-repair-coupling factor [Staphylococcus aureus A9299] gi|257849679|gb|EEV73646.1| transcription-repair-coupling factor [Staphylococcus aureus A9299] Length = 1168 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ ++ E + G I++GTH L Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE+A+ FGL+QL+QLRGRVGR I L HP L++ + RL +K TE GF Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 IA DL R G +LG +Q G Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983 >gi|82750210|ref|YP_415951.1| transcription-repair coupling factor [Staphylococcus aureus RF122] gi|123768536|sp|Q2YVY2|MFD_STAAB RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|82655741|emb|CAI80140.1| transcription-repair coupling factor [Staphylococcus aureus RF122] Length = 1168 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ ++ E + G I++GTH L Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE+A+ FGL+QL+QLRGRVGR I L HP L++ + RL +K TE GF Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 IA DL R G +LG +Q G Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983 >gi|298693833|gb|ADI97055.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus ED133] Length = 1168 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ ++ E + G I++GTH L Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE+A+ FGL+QL+QLRGRVGR I L HP L++ + RL +K TE GF Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 IA DL R G +LG +Q G Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983 >gi|307729622|ref|YP_003906846.1| transcription-repair coupling factor [Burkholderia sp. CCGE1003] gi|307584157|gb|ADN57555.1| transcription-repair coupling factor [Burkholderia sp. CCGE1003] Length = 1161 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 158/442 (35%), Positives = 231/442 (52%), Gaps = 21/442 (4%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G +E K K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL Sbjct: 585 GHAFALEPKDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVAL 644 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A AV G Q +++P +LA+QH + + + + ++ A+++I Sbjct: 645 RAAFIAVMGGKQVALLSPTTLLAEQHTQTFSDRFSDWPVRIAELSRFKSTKEVNAAIQQI 704 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 G I+IGTH L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPI Sbjct: 705 NEGSVDIVIGTHKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPI 764 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWIC 489 PRTL + G D S I P R IKT + R +E + R ++ L G + Y++ Sbjct: 765 PRTLGMALEGLRDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLH 821 Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549 ++E + N R ++E + IA+ HG+M + + E VM F +L+ TT Sbjct: 822 NEVETIE--NRRQMLEALVP-----EARIAVAHGQMHERELERVMRDFVAQRANVLLCTT 874 Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTR 607 +IE GIDV A+ I+I A+ FGLAQLHQLRGRVGR + LL H P L+K + R Sbjct: 875 IIETGIDVPSANTILIHRADKFGLAQLHQLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRR 934 Query: 608 LSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 L ++ E+ GF +A DL+ R GE+LG KQSG + Q L+ +L A K K Sbjct: 935 LEAIQQMEELGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALK 992 Query: 665 HILTQDPDLTSVRGQSIRILLY 686 ++PDLT+ + I L+ Sbjct: 993 D--GKEPDLTAPLAATTEINLH 1012 >gi|283469795|emb|CAQ49006.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus ST398] Length = 1168 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ ++ E + G I++GTH L Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE+A+ FGL+QL+QLRGRVGR I L HP L++ + RL +K TE GF Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 IA DL R G +LG +Q G Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983 >gi|87302159|ref|ZP_01084984.1| transcription-repair coupling factor [Synechococcus sp. WH 5701] gi|87283084|gb|EAQ75040.1| transcription-repair coupling factor [Synechococcus sp. WH 5701] Length = 1187 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 138/425 (32%), Positives = 230/425 (54%), Gaps = 20/425 (4%) Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 ++ G P +G ++ + P+ PT Q AI ++ +DM + M R++ GDVG GKT Sbjct: 592 QQAAGFPFPADGPWQGELEDSFPYEPTPDQVKAIAEVKRDMEKPEPMDRLVCGDVGFGKT 651 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 VA+ A+ AV AG Q ++AP +LAQQH+ + + + V ++ A R+ Sbjct: 652 EVAIRAVFKAVTAGKQCALLAPTTVLAQQHWRTLSERFAPYPLKVALLNRFRTTAERKTI 711 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 L+ + G +++GTH L + KL L++VDE+ RFGV Q+ K+ VL ++ Sbjct: 712 LDGLRDGTVDVVVGTHQLLSKGTSFEKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLS 771 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL ++ G ++S IT P R+PIKT + ++ + V ++ L G + ++ Sbjct: 772 ATPIPRTLYMSLSGVREMSLITTPPPLRRPIKTHLAALDE-EAVRSAIRQELDRGGQVFY 830 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 + P++E + E L E + + HG+M + + ES M +F G +++ Sbjct: 831 VVPRVE--------GIEEVAGQLREMLPGLKLLVAHGQMGEGELESAMVAFNAGEADVML 882 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKN 603 TT+IE G+D+ + I++E+A FGLAQL+QLRGRVGR + + L++P LS+ Sbjct: 883 CTTIIESGLDIPRVNTILVEDAHKFGLAQLYQLRGRVGR-SGVQAHAWLFYPGDASLSEA 941 Query: 604 SYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLE 657 + RL ++ G+ +A D++ R G +LG++QSG + F + L +SL E Sbjct: 942 ARQRLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAE 1001 Query: 658 IARKD 662 I +D Sbjct: 1002 IQGQD 1006 >gi|295702293|ref|YP_003595368.1| transcription-repair coupling factor [Bacillus megaterium DSM 319] gi|294799952|gb|ADF37018.1| transcription-repair coupling factor [Bacillus megaterium DSM 319] Length = 1176 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 135/398 (33%), Positives = 222/398 (55%), Gaps = 21/398 (5%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G + +G + ++ P+ T+ Q ++++I +DM + M R+L GDVG GKT VA+ Sbjct: 603 GYAFSPDGDLQREFETAFPYQETEDQLRSVQEIKKDMEHERPMDRLLCGDVGYGKTEVAI 662 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A AV G Q I+ P ILAQQHYE I++ Q+ I + +++ + +++ ++ + Sbjct: 663 RAAFKAVTDGKQVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRSRKQQQETIKGL 722 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 +G ++IGTH L + Y L L+++DE+ RFGV + K+ Q VL +TATPI Sbjct: 723 KNGTVDVVIGTHRLLSKDVIYKDLGLLVIDEEQRFGVTHKEKIKQMKANVDVLTLTATPI 782 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWIC 489 PRTL ++ LG D+S I P R P++T ++ N + E IER L+ + Y++ Sbjct: 783 PRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPVLVREAIER---ELARDGQVYFLY 839 Query: 490 PQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 ++E E+K +V + + HG+M++ + E+V+ SF G ++++ Sbjct: 840 NRVEDIERKAEEISMLVP---------DARVTYAHGKMNETELEAVILSFLEGEYDVIVS 890 Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSY 605 TT+IE G+D+ + + +I+ NA+ GL+QL+QLRGRVGR ++ YH L++ + Sbjct: 891 TTIIETGVDIPNVNTLIVNNADKMGLSQLYQLRGRVGRSNRVAYAYFTYHKDKVLTEVAE 950 Query: 606 TRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640 RL +K TE GF IA DL R G +LG +Q G Sbjct: 951 KRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAQQHG 988 >gi|83745897|ref|ZP_00942954.1| Transcription-repair coupling factor [Ralstonia solanacearum UW551] gi|83727587|gb|EAP74708.1| Transcription-repair coupling factor [Ralstonia solanacearum UW551] Length = 1206 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 147/415 (35%), Positives = 217/415 (52%), Gaps = 23/415 (5%) Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 A ++ L R+ ++ P+ + + F T Q +AI ++ DM+ M Sbjct: 629 AAELLNLYARRALRQGFAFPLTPNDY--EAFAESFGFDETPDQAAAITAVIADMTSGKPM 686 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R++ GDVG GKT VAL A AV G Q ++AP +LA+QHY+ + + + + Sbjct: 687 DRLVCGDVGFGKTEVALRAAFVAVMGGKQVAMLAPTTLLAEQHYQTLADRFADWPVRIAE 746 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 I+ + A+E I G I+IGTH L +Q+ +L LVI+DE+HRFGV+Q+ L Sbjct: 747 ISRFKNKKEIDAAIEAINAGTIDIVIGTHKLLSPDVQFDRLGLVIIDEEHRFGVRQKEAL 806 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 VL +TATPIPRTL + G D S I P R IKT + R ++ + R Sbjct: 807 KTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTF---VRREEDSVLR 863 Query: 475 LKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530 ++ L G + Y++ ++E E K + +V + +A+ HG+M + + Sbjct: 864 EAILRELKRGGQVYFLHNEVETIENKRAKLEELVPE---------ARVAVAHGQMHEREL 914 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 E VM F +L+ TT+IE GIDV A+ I+I A+ FGLAQLHQLRGRVGR + Sbjct: 915 ERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRADKFGLAQLHQLRGRVGRSHHQA 974 Query: 591 SCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 LL H L+K + RL ++ E+ GF +A DL+ R GE+LG KQSG Sbjct: 975 YAYLLVHDAEGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDKQSG 1029 >gi|302332216|gb|ADL22409.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus JKD6159] Length = 1168 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ ++ E + G I++GTH L Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE+A+ FGL+QL+QLRGRVGR I L HP L++ + RL +K TE GF Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 IA DL R G +LG +Q G Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983 >gi|258424461|ref|ZP_05687340.1| transcription-repair coupling factor [Staphylococcus aureus A9635] gi|257845330|gb|EEV69365.1| transcription-repair coupling factor [Staphylococcus aureus A9635] Length = 1168 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ ++ E + G I++GTH L Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE+A+ FGL+QL+QLRGRVGR I L HP L++ + RL +K TE GF Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 IA DL R G +LG +Q G Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983 >gi|254480585|ref|ZP_05093832.1| transcription-repair coupling factor [marine gamma proteobacterium HTCC2148] gi|214039168|gb|EEB79828.1| transcription-repair coupling factor [marine gamma proteobacterium HTCC2148] Length = 1154 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 145/429 (33%), Positives = 226/429 (52%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W R+ +A Q+ + R++ + G ++ + PF T QE Sbjct: 552 QWDKARRKASEKANDIAAQLLEVYARREAR--TGYAFTLDQDKYSQFSAAFPFEETPDQE 609 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 I+ +++DM M R++ GDVG GKT VA+ A A + Q ++ P +LAQQH+ Sbjct: 610 LTIRAVVEDMCSPRVMDRLVCGDVGFGKTEVAMRAAFIASQNKKQVAVLVPTTLLAQQHF 669 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + VE+++ A + +RIA G+ I++GTH L Q ++ L L+ Sbjct: 670 SSFCDRFADWPVNVEVVSRFKSAAQVKDVSKRIADGKIDILVGTHKLLQSDFRFNDLGLL 729 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+HRFGV+Q+ + + +L +TATPIPRTL + G D+S I PA R I Sbjct: 730 IIDEEHRFGVKQKEAIKALRSEVDILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSI 789 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES--NFRSVVERFNSLHEHFTS 516 KT + N I V E + G + Y++ +++ +ES R +V N Sbjct: 790 KTFVREHN-IALVKEAVLRETLRGGQVYYLHNEVKSIEESARKLRELVPDLN-------- 840 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 + + HG+M + + E VM SF + +L+ TT+IE GID+ +A+ IIIE A+ FGLAQL Sbjct: 841 -VGVAHGQMRETELEHVMSSFYHQHNHILMCTTIIETGIDIPNANTIIIERADRFGLAQL 899 Query: 577 HQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 HQLRGRVGR + LL P ++ ++ RL ++ D G+L+A DL+ R G Sbjct: 900 HQLRGRVGRSHHQAYAYLLTPPRSAITADAGKRLEAIEAAGDLGAGYLLATHDLEIRGAG 959 Query: 632 EILGIKQSG 640 E+LG +QSG Sbjct: 960 ELLGDEQSG 968 >gi|255065241|ref|ZP_05317096.1| transcription-repair coupling factor [Neisseria sicca ATCC 29256] gi|255050662|gb|EET46126.1| transcription-repair coupling factor [Neisseria sicca ATCC 29256] Length = 1158 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 150/428 (35%), Positives = 233/428 (54%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Sbjct: 603 QAFADGFGYEETEDQAAAIVAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 662 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F ++ + + N +A + ALE +A G I+IG Sbjct: 663 QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 721 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD I++ L LVI+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G Sbjct: 722 THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 781 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ Sbjct: 782 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 835 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ ER +L + I + H ++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 836 NMRERLETLLPE--ARIGVAHRQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 893 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III A+ FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF Sbjct: 894 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 953 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K + PDL + G Sbjct: 954 TLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1009 Query: 679 QSIRILLY 686 + I L+ Sbjct: 1010 ITTEIKLH 1017 >gi|253730971|ref|ZP_04865136.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253725283|gb|EES94012.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 1168 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ ++ E + G I++GTH L Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE+A+ FGL+QL+QLRGRVGR I L HP L++ + RL +K TE GF Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 IA DL R G +LG +Q G Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983 >gi|49482730|ref|YP_039954.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus MRSA252] gi|295427037|ref|ZP_06819674.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus EMRSA16] gi|81828081|sp|Q6GJG8|MFD_STAAR RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|49240859|emb|CAG39526.1| putative transcription-repair coupling factor [Staphylococcus aureus subsp. aureus MRSA252] gi|295129040|gb|EFG58669.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus EMRSA16] Length = 1168 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ ++ E + G I++GTH L Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE+A+ FGL+QL+QLRGRVGR I L HP L++ + RL +K TE GF Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 IA DL R G +LG +Q G Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983 >gi|57650044|ref|YP_185435.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus COL] gi|151220678|ref|YP_001331500.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus str. Newman] gi|81859647|sp|Q5HIH2|MFD_STAAC RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|57284230|gb|AAW36324.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus COL] gi|150373478|dbj|BAF66738.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus str. Newman] Length = 1168 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ ++ E + G I++GTH L Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE+A+ FGL+QL+QLRGRVGR I L HP L++ + RL +K TE GF Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 IA DL R G +LG +Q G Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983 >gi|319787478|ref|YP_004146953.1| transcription-repair coupling factor [Pseudoxanthomonas suwonensis 11-1] gi|317465990|gb|ADV27722.1| transcription-repair coupling factor [Pseudoxanthomonas suwonensis 11-1] Length = 1166 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 143/432 (33%), Positives = 233/432 (53%), Gaps = 24/432 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +WT R+ +A ++ + R+Q + G+ ++++ + + PF T Q Sbjct: 568 QWTKAKRKAQEKVRDVAAELLEIQARRQARA--GLALDIDRAMYEGFAAGFPFEETPDQH 625 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI+ +L+D+ M R++ GDVG GKT VA+ A AA G Q ++ P +LA+QH+ Sbjct: 626 AAIEAVLRDLQSSQPMDRVVCGDVGFGKTEVAVRAAFAAASGGRQVAVLVPTTLLAEQHF 685 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + VE+++ + LE++A G+ +I+GTH L Q +++ L LV Sbjct: 686 RNFRDRFADWPLKVEVLSRFKSKKEIEAELEKVARGEIDVIVGTHRLLQPDVKFKDLGLV 745 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+Q+ L H+L +TATPIPRTL + G D+S I P R + Sbjct: 746 IVDEEQRFGVRQKEALKALRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPPNRLAV 805 Query: 459 KTVIIPI--NRIDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVERFNSLHEHF 514 +T ++P N++ E +R LS G + Y++ +E + + +V Sbjct: 806 QTFVVPWDDNQLREAFQR---ELSRGGQLYFLHNDVESMGRMQKQLAELVP--------- 853 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + I + HG+M + + E VM F+ +L+A+T+IE GID+ +A+ I+I A+ FGLA Sbjct: 854 EARIGVAHGQMPERELERVMLDFQKQRFNVLLASTIIESGIDIPNANTIVINRADKFGLA 913 Query: 575 QLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628 QLHQLRGRVGR + LL P +S ++ RL + + ++ GF +A DL+ R Sbjct: 914 QLHQLRGRVGRSHHRAYAYLLVPPDRRAMSPDAEKRLDAIASMDELGAGFTLATHDLEIR 973 Query: 629 KEGEILGIKQSG 640 GE+LG QSG Sbjct: 974 GAGELLGEDQSG 985 >gi|21282187|ref|NP_645275.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus MW2] gi|49485367|ref|YP_042588.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus MSSA476] gi|297207394|ref|ZP_06923833.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300910353|ref|ZP_07127806.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus TCH70] gi|81827911|sp|Q6GBY5|MFD_STAAS RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|81847858|sp|Q8NXZ6|MFD_STAAW RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|21203623|dbj|BAB94323.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus MW2] gi|49243810|emb|CAG42235.1| putative transcription-repair coupling factor [Staphylococcus aureus subsp. aureus MSSA476] gi|296887957|gb|EFH26851.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300888342|gb|EFK83529.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus TCH70] Length = 1168 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ ++ E + G I++GTH L Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE+A+ FGL+QL+QLRGRVGR I L HP L++ + RL +K TE GF Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 IA DL R G +LG +Q G Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983 >gi|313680042|ref|YP_004057781.1| transcription factor card [Oceanithermus profundus DSM 14977] gi|313152757|gb|ADR36608.1| transcription factor CarD [Oceanithermus profundus DSM 14977] Length = 986 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 151/429 (35%), Positives = 236/429 (55%), Gaps = 21/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W A E LA ++ +L R+Q P + I P + T+ Q Sbjct: 401 DWQRAKARAQADAEALAQRLLVLYARRQQTPGTAYPALPDWD--PLIEAGFPHTLTEDQA 458 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 A++D+L+D+ + M R++ GDVG GKT +AL A V G Q +AP +LA+QHY Sbjct: 459 RALEDVLRDLETPHPMDRLVSGDVGFGKTEIALRAAHRVVGHGRQVAYLAPTTLLAEQHY 518 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + V +++ P+A R+ E +A G+ ++IGTH L D +++ +L L+ Sbjct: 519 NTFAERFADLPVEVALLSRFTPEAEARRVEEGLAEGRIDVVIGTHRLLSDRVRFRQLGLL 578 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+HRFGV Q+ ++ + A VL ++ATPIPRTL +G D+S I P GRKPI Sbjct: 579 IVDEEHRFGVAQKERIKEMAEGLDVLSLSATPIPRTLYQALVGLKDVSSIQTPPPGRKPI 638 Query: 459 KTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +TV+ P D + R V+ + G KA+++ +I E + +V Sbjct: 639 QTVVAP---FDPALVREAVLFEMERGGKAFYVHDRIASIEARARYLEVLVP--------- 686 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + I ++HGRM+D + E VM F G LL+ATT++E G+D+ +A+ I+IE A+ GLA Sbjct: 687 EARIGVVHGRMADREIEEVMRHFARGAFDLLVATTIVESGLDIPEANTILIERADRLGLA 746 Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 L+QLRGRVGR E + L + P L++ + RL+ L + D G +AE+D++ R G Sbjct: 747 SLYQLRGRVGRREREAYAYLFHPPRLTEAAERRLAALADLTDLGSGHRLAEKDMEIRGVG 806 Query: 632 EILGIKQSG 640 +LG +Q G Sbjct: 807 NLLGPQQHG 815 >gi|116490296|ref|YP_809840.1| transcription-repair coupling factor [Oenococcus oeni PSU-1] gi|116091021|gb|ABJ56175.1| transcription-repair coupling factor [Oenococcus oeni PSU-1] Length = 1188 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 141/434 (32%), Positives = 236/434 (54%), Gaps = 26/434 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W R A E +A ++ L +++ E+G +V+ + Q+ + T Q Sbjct: 583 DWAKTKRRVTAKVEDIADELIALYSKRE--GEVGYAFSVDDQRQQEFDDGFAYPETVDQL 640 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +IK+I DM K M R+L GDVG GKT VA A A+E Q + P IL+QQHY Sbjct: 641 RSIKEIKSDMENKKPMDRLLVGDVGFGKTEVAFRAAFKAIEDHKQVAFLTPTTILSQQHY 700 Query: 339 EF-IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 + I++++ +I + +++ ++ ++++ Q ++IGTH L + + L L Sbjct: 701 QTAIERFSDFPEIKIAMLSRFNTAGQNKEVIKKLKAHQLDMVIGTHRLLSKDVAFDDLGL 760 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +I+DE+ RFGV+ + K+ Q VL +TATPIPRTL + +G D+S + PA R P Sbjct: 761 LIIDEEQRFGVKHKEKIKQLRANVDVLTLTATPIPRTLNMALVGARDLSVLETPPANRFP 820 Query: 458 IKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEH 513 I+T ++ N I + IE+ LS G + +++ +++ E+ + +V N Sbjct: 821 IQTYVLEENWPVIADAIEK---ELSRGGQTFFLHNRVQDIERTVGEIQRIVPDAN----- 872 Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 + IHGRM++ E V+ F NG +L+ TT+IE G+D+ +A+ +I+EN+E FGL Sbjct: 873 ----VGYIHGRMNETQLEDVLMDFLNGIYDVLVTTTIIETGVDIPNANTLIVENSERFGL 928 Query: 574 AQLHQLRGRVGRGEEISSCILLY---HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQ 627 +QL+QLRGR+GR ++ Y P ++++ RL +++ TE GF +A DL Sbjct: 929 SQLYQLRGRIGRSNRLAYAYFTYPGDRQP-TEDAQKRLEAIRDFTELGSGFKLAMRDLSI 987 Query: 628 RKEGEILGIKQSGM 641 R G++LG +Q G Sbjct: 988 RGAGDLLGKQQHGF 1001 >gi|328463460|gb|EGF35111.1| transcription-repair coupling factor [Lactobacillus helveticus MTCC 5463] Length = 1055 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 143/430 (33%), Positives = 237/430 (55%), Gaps = 19/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ + E +A + L +++ +K G + + + ++ P++ T Q Sbjct: 563 EWAKIKRKVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKQFEDAFPYAETPDQL 620 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +IK+I +DM + M R++ GDVG GKT VAL A A++ Q +AP ILAQQHY Sbjct: 621 RSIKEIKEDMEKPKPMDRLVVGDVGFGKTEVALRAAFKAIQDNKQVAFLAPTTILAQQHY 680 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I+ ++ + +++ A ++ +E + G+ +++GTH L +++ L L+ Sbjct: 681 ETIQDRFKDFPVNTAMLSRFQTPAESKEIIEGLKEGKIDLVVGTHRLLSKDVEFKDLGLL 740 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + +L Q VL +TATPIPRTL ++ +G D+S + P R PI Sbjct: 741 IVDEEQRFGVKHKERLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800 Query: 459 KTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T + + +I V+ L+ + +G + +++ +I S+ VE+ L + + Sbjct: 801 QTYV--MEQIPSVVRDACLREMQRDG-QVFYLHNRI-----SDIDETVEKLQQLIPN--A 850 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 IA HGRMS E ++ F N +L+ TT+IE GID+ + + +IIE+A+H+GL+QL Sbjct: 851 RIASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDIPNVNTMIIEDADHYGLSQL 910 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGR+GR ++ LY P L++ RL +++ TE GF IA DL R G Sbjct: 911 YQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAG 970 Query: 632 EILGIKQSGM 641 +LG +Q G Sbjct: 971 NMLGAQQHGF 980 >gi|260102336|ref|ZP_05752573.1| transcription-repair coupling factor [Lactobacillus helveticus DSM 20075] gi|260083845|gb|EEW67965.1| transcription-repair coupling factor [Lactobacillus helveticus DSM 20075] Length = 1165 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 143/430 (33%), Positives = 237/430 (55%), Gaps = 19/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ + E +A + L +++ +K G + + + ++ P++ T Q Sbjct: 563 EWAKIKRKVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKQFEDAFPYAETPDQL 620 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +IK+I +DM + M R++ GDVG GKT VAL A A++ Q +AP ILAQQHY Sbjct: 621 RSIKEIKEDMEKPKPMDRLVVGDVGFGKTEVALRAAFKAIQDNKQVAFLAPTTILAQQHY 680 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I+ ++ + +++ A ++ +E + G+ +++GTH L +++ L L+ Sbjct: 681 ETIQDRFKDFPVNTAMLSRFQTPAESKEIIEGLKEGKIDLVVGTHRLLSKDVEFKDLGLL 740 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + +L Q VL +TATPIPRTL ++ +G D+S + P R PI Sbjct: 741 IVDEEQRFGVKHKERLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800 Query: 459 KTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T + + +I V+ L+ + +G + +++ +I S+ VE+ L + + Sbjct: 801 QTYV--MEQIPSVVRDACLREMQRDG-QVFYLHNRI-----SDIDETVEKLQQLIPN--A 850 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 IA HGRMS E ++ F N +L+ TT+IE GID+ + + +IIE+A+H+GL+QL Sbjct: 851 RIASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDIPNVNTMIIEDADHYGLSQL 910 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGR+GR ++ LY P L++ RL +++ TE GF IA DL R G Sbjct: 911 YQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAG 970 Query: 632 EILGIKQSGM 641 +LG +Q G Sbjct: 971 NMLGAQQHGF 980 >gi|257424615|ref|ZP_05601043.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus 55/2053] gi|257427281|ref|ZP_05603682.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus 65-1322] gi|257429918|ref|ZP_05606304.1| transcription-repair-coupling factor [Staphylococcus aureus subsp. aureus 68-397] gi|257435524|ref|ZP_05611574.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus M876] gi|282903089|ref|ZP_06310981.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus C160] gi|282904878|ref|ZP_06312738.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus Btn1260] gi|282907825|ref|ZP_06315663.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910141|ref|ZP_06317947.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus WBG10049] gi|282913331|ref|ZP_06321122.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus M899] gi|282918284|ref|ZP_06326024.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus C427] gi|282923035|ref|ZP_06330721.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus C101] gi|283957293|ref|ZP_06374751.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus A017934/97] gi|293500380|ref|ZP_06666232.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus 58-424] gi|293509318|ref|ZP_06668034.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus M809] gi|293515907|ref|ZP_06670597.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus M1015] gi|297591586|ref|ZP_06950223.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus MN8] gi|257272642|gb|EEV04762.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus 55/2053] gi|257275932|gb|EEV07400.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus 65-1322] gi|257279434|gb|EEV10029.1| transcription-repair-coupling factor [Staphylococcus aureus subsp. aureus 68-397] gi|257285161|gb|EEV15278.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus M876] gi|282314554|gb|EFB44941.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus C101] gi|282317850|gb|EFB48219.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus C427] gi|282322802|gb|EFB53122.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus M899] gi|282325989|gb|EFB56295.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus WBG10049] gi|282328301|gb|EFB58576.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331995|gb|EFB61504.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus Btn1260] gi|282596515|gb|EFC01475.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus C160] gi|283791217|gb|EFC30027.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus A017934/97] gi|290921315|gb|EFD98373.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus M1015] gi|291096340|gb|EFE26600.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus 58-424] gi|291467863|gb|EFF10373.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus M809] gi|297575455|gb|EFH94172.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus MN8] gi|312436407|gb|ADQ75478.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus TCH60] Length = 1168 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ ++ E + G I++GTH L Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE+A+ FGL+QL+QLRGRVGR I L HP L++ + RL +K TE GF Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 IA DL R G +LG +Q G Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983 >gi|87160796|ref|YP_493190.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194263|ref|YP_499055.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus NCTC 8325] gi|161508743|ref|YP_001574402.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253735238|ref|ZP_04869403.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus TCH130] gi|258452816|ref|ZP_05700811.1| transcription-repair coupling factor [Staphylococcus aureus A5948] gi|262049988|ref|ZP_06022847.1| transcription-repair coupling factor [Staphylococcus aureus D30] gi|282925578|ref|ZP_06333231.1| transcription-repair coupling factor [Staphylococcus aureus A9765] gi|284023512|ref|ZP_06377910.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus 132] gi|294850363|ref|ZP_06791096.1| transcription-repair coupling factor [Staphylococcus aureus A9754] gi|123098062|sp|Q2G0R8|MFD_STAA8 RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|123722412|sp|Q2FJD8|MFD_STAA3 RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|87126770|gb|ABD21284.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201821|gb|ABD29631.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus NCTC 8325] gi|160367552|gb|ABX28523.1| transcription-repair coupling factor helicase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253726798|gb|EES95527.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus TCH130] gi|257859502|gb|EEV82355.1| transcription-repair coupling factor [Staphylococcus aureus A5948] gi|259161923|gb|EEW46506.1| transcription-repair coupling factor [Staphylococcus aureus D30] gi|282592482|gb|EFB97494.1| transcription-repair coupling factor [Staphylococcus aureus A9765] gi|294822787|gb|EFG39223.1| transcription-repair coupling factor [Staphylococcus aureus A9754] gi|315196186|gb|EFU26542.1| transcription-repair coupling factor helicase [Staphylococcus aureus subsp. aureus CGS01] gi|320139410|gb|EFW31288.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus MRSA131] gi|320144187|gb|EFW35955.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus MRSA177] gi|329729764|gb|EGG66161.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus 21189] Length = 1168 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ ++ E + G I++GTH L Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE+A+ FGL+QL+QLRGRVGR I L HP L++ + RL +K TE GF Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 IA DL R G +LG +Q G Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983 >gi|323438735|gb|EGA96475.1| transcription-repair coupling factor [Staphylococcus aureus O11] gi|323442053|gb|EGA99688.1| transcription-repair coupling factor [Staphylococcus aureus O46] Length = 1168 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ ++ E + G I++GTH L Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE+A+ FGL+QL+QLRGRVGR I L HP L++ + RL +K TE GF Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 IA DL R G +LG +Q G Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983 >gi|269202123|ref|YP_003281392.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus ED98] gi|296276156|ref|ZP_06858663.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus MR1] gi|262074413|gb|ACY10386.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus ED98] Length = 1168 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ ++ E + G I++GTH L Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE+A+ FGL+QL+QLRGRVGR I L HP L++ + RL +K TE GF Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 IA DL R G +LG +Q G Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983 >gi|213965538|ref|ZP_03393733.1| transcription-repair coupling factor [Corynebacterium amycolatum SK46] gi|213951922|gb|EEB63309.1| transcription-repair coupling factor [Corynebacterium amycolatum SK46] Length = 1215 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 136/385 (35%), Positives = 210/385 (54%), Gaps = 17/385 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q++ N PF+ T+ Q AI +I DM + M R+L GDVG GKT VAL A AV+ G Sbjct: 641 QEMEDNFPFTETEDQLQAIDEIKSDMEKPVPMDRVLIGDVGYGKTEVALRAAFKAVQDGR 700 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQH + + + + ++ R+ LE + +G I+IGT Sbjct: 701 QVAVLVPTTLLAQQHLTTFTQRMEGFPVTIRGLSRFTSPKDSREVLEGLKNGTVDIVIGT 760 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +Q+ +L LVIVDE+ RFGV+ + + VL M+ATPIPRTL ++ G Sbjct: 761 HRLLQTGVQWKELGLVIVDEEQRFGVEHKEHIKALRHHVDVLTMSATPIPRTLEMSIAGI 820 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNF 500 ++S+I P R P+ T + +V ++ L + +++ ++E +K N Sbjct: 821 REMSQILTPPQDRHPVLT-YVGAQSDKQVAAAIRRELLRDGQVFYLHNKVETIDKVAQNI 879 Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560 R++V + + + HG+M + E +D F +L+ TT++E G+D+ +A Sbjct: 880 RNLVPE---------ARVVVAHGQMGEEQLERTVDGFWQREYDVLVCTTIVETGLDIANA 930 Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED-- 616 + +I+ENA H GL+QLHQLRGRVGR E + LY + L++ SY RLS + D Sbjct: 931 NTLIVENAHHMGLSQLHQLRGRVGRSRERAYAYFLYPENQTLTETSYDRLSTIAQNNDLG 990 Query: 617 -GFLIAEEDLKQRKEGEILGIKQSG 640 G +A +DL+ R G ILG +QSG Sbjct: 991 AGMAVAMKDLEMRGAGNILGAEQSG 1015 >gi|71066039|ref|YP_264766.1| transcription-repair coupling factor [Psychrobacter arcticus 273-4] gi|71039024|gb|AAZ19332.1| transcription-repair coupling factor [Psychrobacter arcticus 273-4] Length = 1243 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 154/445 (34%), Positives = 234/445 (52%), Gaps = 25/445 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL M+ + + ++GI ++ + F T Q +AI +++DM Q M R++ Sbjct: 658 LLNMQARREAKVGIHFKIDPSQYELFASQFAFEETPDQANAIHAVMEDMRQNQPMDRLIC 717 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV AG Q ++ P +LA QH + + + + +E ++ Sbjct: 718 GDVGFGKTEVAMRAAFIAVSAGYQVAVLVPTTLLAGQHEDNFRNRFADWPVRIETLSRFG 777 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + H+ L +A G+ I+IGTH L Q +++ L L+IVDE+HRFGV+ + ++ T Sbjct: 778 GKKHQDTVLTDLAAGKVDIVIGTHKLLQPDVKFSNLGLMIVDEEHRFGVRHKERIKAIQT 837 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKV 477 + MTATPIPRTL + G D+S I PA R IKT ++ + E I R Sbjct: 838 DVDSMSMTATPIPRTLNMALSGMRDMSIIATPPARRLAIKTFVMQKTEALMKEAILR--- 894 Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 L G + Y + + E+ R +V + + + HG+M + E VM Sbjct: 895 ELLRGGQVYLLHNDVASIERMAETIRELVPE---------ARVGVAHGQMQERQLEQVMQ 945 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 + + +LI +T+IE GIDV +A+ IIIE A+ FGLAQLHQLRGRVGR + C LL Sbjct: 946 QYYHKKFNVLICSTIIETGIDVPNANTIIIERADKFGLAQLHQLRGRVGRSHHQAYCYLL 1005 Query: 596 YHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650 L ++ RL ++ GF++A EDL+ R GEILG +QSG + + Sbjct: 1006 VPSIKGLKGDAKRRLHAIERANTLGAGFMLASEDLEIRGAGEILGKQQSGNMQAIGF--S 1063 Query: 651 LHDSLLEIARKDAKHILTQDPDLTS 675 L+ +LE A K K ++PDL++ Sbjct: 1064 LYMDMLERATKAIK--AGKEPDLST 1086 >gi|257432620|ref|ZP_05608982.1| transcription-repair-coupling factor [Staphylococcus aureus subsp. aureus E1410] gi|257282485|gb|EEV12618.1| transcription-repair-coupling factor [Staphylococcus aureus subsp. aureus E1410] Length = 1168 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ ++ E + G I++GTH L Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE+A+ FGL+QL+QLRGRVGR I L HP L++ + RL +K TE GF Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPENKVLTETAEDRLQAIKEFTELGSGF 961 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 IA DL R G +LG +Q G Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983 >gi|296123961|ref|YP_003631739.1| transcription-repair coupling factor [Planctomyces limnophilus DSM 3776] gi|296016301|gb|ADG69540.1| transcription-repair coupling factor [Planctomyces limnophilus DSM 3776] Length = 1103 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 146/431 (33%), Positives = 233/431 (54%), Gaps = 21/431 (4%) Query: 238 IALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 +A ++R Q ++E+ GI + ++ + P+ T Q AI DI +DM + M Sbjct: 516 MAADMLRLQAERELQPGIAFPPDSHWMEEFEASFPYIETIDQSKAILDIKRDMERPRPME 575 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++ GDVG GKT VA+ A AV+ G Q ++ P +LA+QHY I + + Sbjct: 576 RLICGDVGFGKTEVAMRAAFKAVDGGKQVAVLVPTTVLAEQHYRSFSSRFAEFPINIGQL 635 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 + + ++ L + G ++IGTH L Q + + L L+I+DE+ RFGV+ + +L Sbjct: 636 SRFRTKTEQKLTLSGLMDGSVDLVIGTHRLVQSDVHFKDLGLLIIDEEQRFGVEAKERLK 695 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475 + T +L ++ATPIPRTL L+ +G DIS + P R I+T I R D + R Sbjct: 696 KLRTQTDILTLSATPIPRTLHLSLIGVRDISNLETPPQDRMAIETRIC---RFDPTLIRQ 752 Query: 476 KVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 +V L+ G + Y++ ++ N +++ ER S+ + + ++HG+M++ + E Sbjct: 753 AIVRELNRGGQIYFVHNRV-----YNIQTMAERIRSIVPE--AQVGVVHGQMNEHEMEEA 805 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M F G +L+ATT+IE G+D+ +A+ I I AEH+GLA++HQLRGRVGR + + C Sbjct: 806 MLGFVRGDLDVLVATTIIESGLDIPNANTIFINQAEHYGLAEMHQLRGRVGRYKHRAYCY 865 Query: 594 LLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648 L+ LS + RL ++ + GF I+ DL+ R G ILG +QSG I Sbjct: 866 LMVEEGKILSPQATKRLKAIEEFSELGAGFKISMRDLEIRGAGNILGTEQSG--HIAIVG 923 Query: 649 PELHDSLLEIA 659 EL+ LLE A Sbjct: 924 YELYCQLLENA 934 >gi|254493915|ref|ZP_05107086.1| LOW QUALITY PROTEIN: transcription-repair coupling factor [Neisseria gonorrhoeae 1291] gi|226512955|gb|EEH62300.1| LOW QUALITY PROTEIN: transcription-repair coupling factor [Neisseria gonorrhoeae 1291] Length = 739 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 149/428 (34%), Positives = 233/428 (54%), Gaps = 17/428 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Sbjct: 182 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 241 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++AP +L +QH + F ++ + + N +A + LE +A G I+IG Sbjct: 242 QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKATLEGMADGTVDIVIG 300 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L QD I++ L L+I+DE+HRFGV+Q+ +L + +L MTATPIPRTL + G Sbjct: 301 THKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 360 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D S IT P+ R +KT + P + V E + L G + +++ +++ Sbjct: 361 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 414 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 ++ ER +L + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ Sbjct: 415 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 472 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618 III A+ FGLAQLHQLRGRVGR + LL ++K++ RL + ++ GF Sbjct: 473 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 532 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A +DL+ R GEILG QSG + + L+ +L+ A +D K + PDL + G Sbjct: 533 TLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 588 Query: 679 QSIRILLY 686 + I L+ Sbjct: 589 ITTEIKLH 596 >gi|254252138|ref|ZP_04945456.1| Transcription-repair coupling factor [Burkholderia dolosa AUO158] gi|124894747|gb|EAY68627.1| Transcription-repair coupling factor [Burkholderia dolosa AUO158] Length = 1164 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 158/433 (36%), Positives = 230/433 (53%), Gaps = 27/433 (6%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q Sbjct: 604 KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 663 Query: 324 AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 +++P +LA+QH + F+ ++ IVE+ + A+ +I G I+IGT Sbjct: 664 VALLSPTTLLAEQHTQTFVDRFADWPVRIVELSRFKTAK-EVNAAIAQINEGSVDIVIGT 722 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G Sbjct: 723 HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 782 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498 D S I P R IKT + R +E + R ++ L G + Y++ ++E E +++ Sbjct: 783 RDFSVIATAPQKRLAIKTFV---RREEESVIREAMLRELKRGGQVYFLHNEVETIENRKA 839 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + I I HG+M + + E VM F +L+ TT+IE GIDV Sbjct: 840 MLEELVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 890 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616 A+ II+ A+ FGLAQLHQLRGRVGR + LL H P L+K + RL ++ E+ Sbjct: 891 SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEE 950 Query: 617 ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 GF +A DL+ R GE+LG KQSG + Q L+ +L A K K+ ++PDL Sbjct: 951 LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDL 1006 Query: 674 TSVRGQSIRILLY 686 T+ + I L+ Sbjct: 1007 TAPLAATTEINLH 1019 >gi|307705912|ref|ZP_07642750.1| transcription-repair coupling factor [Streptococcus mitis SK597] gi|307620573|gb|EFN99671.1| transcription-repair coupling factor [Streptococcus mitis SK597] Length = 1168 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 154/437 (35%), Positives = 238/437 (54%), Gaps = 28/437 (6%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 I L R Q K G + + + P+ T Q ++++I +DM M R+ Sbjct: 580 IKLYSERSQLK---GFAFSADDEDQHAFDDAFPYVETDDQLRSVEEIKRDMQASQPMDRL 636 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 L GDVG GKT VA+ A AV Q V++ P +LAQQHY K+ QN + +++++ Sbjct: 637 LVGDVGFGKTEVAMRAAFKAVNDHKQVVVLVPTTVLAQQHYTNFKERFQNFAVNIDVLSR 696 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 + + + LE++ +GQ I+IGTH + + + L L+I+DE+ RFGV+ + L + Sbjct: 697 FRSKKEQTETLEKLKNGQVDILIGTHRVLSKDVVFADLGLMIIDEEQRFGVKHKETLKEL 756 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477 VL +TATPIPRTL ++ LG D+S I P R P++T ++ N D VI Sbjct: 757 KKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKN--DSVIR--DA 812 Query: 478 VLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESV 533 VL E G + Y++ +++ ++ ++ + L E +SI +HG+MS+I E+ Sbjct: 813 VLREMERGGQVYYLYNKVD--------TIDQKVSELQELIPEASIGYVHGQMSEIQLENT 864 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 + F G +L+ TT+IE G+D+ +A+ + IENA+H GL+ L+QLRGRVGR I+ Sbjct: 865 LLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGLSTLYQLRGRVGRSNRIAYAY 924 Query: 594 LLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648 L+Y P +S+ S RL +K TE GF IA DL R G +LG QSG + Sbjct: 925 LMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNLLGKSQSGFIDSV--G 982 Query: 649 PELHDSLLE--IARKDA 663 EL+ LLE IA+++ Sbjct: 983 FELYSQLLEEAIAKRNG 999 >gi|58336612|ref|YP_193197.1| transcriptional repair coupling factor [Lactobacillus acidophilus NCFM] gi|58253929|gb|AAV42166.1| transcriptional repair coupling factor [Lactobacillus acidophilus NCFM] Length = 1165 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 143/430 (33%), Positives = 237/430 (55%), Gaps = 19/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ + E +A + L +++ +K G + + + +K P+ T Q Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQRKFDDAFPYPETADQL 620 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +IK+I +DM + M R++ GDVG GKT VAL A AV+ Q + P ILAQQHY Sbjct: 621 RSIKEIKEDMEKPKPMDRLVVGDVGFGKTEVALRAAFKAVQDNKQVAFLVPTTILAQQHY 680 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I+ ++ + + +++ A ++ +E + G+ +++GTH + +++ L L+ Sbjct: 681 ETIQDRFKDFPVNIAMLSRFQTPAESKEIIEGLKDGKIDLVVGTHRILSKDVEFKNLGLL 740 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + +L Q VL +TATPIPRTL ++ +G D+S + P R PI Sbjct: 741 IVDEEQRFGVKHKERLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800 Query: 459 KTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T + + +I V++ L+ + +G + +++ +I S+ VE+ L + + Sbjct: 801 QTYV--MEQIPSVVKDACLREMQRDG-QVFYLHNRI-----SDIDETVEKLQQLIPN--A 850 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 IA HGRMS E ++ F N +L+ TT+IE GID+ + + +IIE+A+H+GL+QL Sbjct: 851 RIASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQL 910 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGR+GR ++ LY P L++ RL +++ TE GF IA DL R G Sbjct: 911 YQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAG 970 Query: 632 EILGIKQSGM 641 +LG +Q G Sbjct: 971 NMLGAQQHGF 980 >gi|310824213|ref|YP_003956571.1| transcription-repair-coupling factor [Stigmatella aurantiaca DW4/3-1] gi|309397285|gb|ADO74744.1| Transcription-repair-coupling factor [Stigmatella aurantiaca DW4/3-1] Length = 1194 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 215/382 (56%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + F T Q AI+D+L DM + M R++ GDVG GKT VA+ A A Q ++ Sbjct: 644 DFEFEETPDQAKAIEDVLADMQKPTPMDRLVCGDVGYGKTEVAMRAAFKAALDRKQVAVL 703 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+ KK ++ I VE+I+G R+ L+R G+ I+IGTH L Sbjct: 704 VPTTVLAQQHFLSFKKRFKDYPITVEVISGLKKPPEVRELLKRAKEGRVDILIGTHKLLG 763 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + + L L+IVDE+ RFGV+Q+ +L + T VL +TATPIPRTL ++ G D+S Sbjct: 764 GDVAFKDLGLLIVDEEQRFGVKQKEQLKRLRTQVDVLTLTATPIPRTLHMSMSGVRDMSI 823 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSV 503 I P R+ I+T ++ + I E I+R ++ G + +++ +++ E R + Sbjct: 824 IATPPQDRRAIRTFVMKFDPQVIQEAIQR---EVARGGQVFFVHNRVQSIASMEKLLREL 880 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 V + SI + HG+M + E VM +F ++L+ T++IE GID+ A+ + Sbjct: 881 VPKV---------SIGVAHGQMGEGQLERVMLAFTEKQHQVLLCTSIIESGIDISSANTM 931 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GF 618 II A+ FGLAQL+QLRGRVGR +E + LL +++++ RL VL+N + GF Sbjct: 932 IINRADAFGLAQLYQLRGRVGRSKERAYAYLLVPARRAVTRDAQRRLEVLQNFTELGAGF 991 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 IA DL+ R G +LG KQSG Sbjct: 992 SIASHDLEIRGAGNLLGDKQSG 1013 >gi|258542202|ref|YP_003187635.1| DNA helicase transcription-repair coupling factor [Acetobacter pasteurianus IFO 3283-01] gi|256633280|dbj|BAH99255.1| DNA helicase transcription-repair coupling factor [Acetobacter pasteurianus IFO 3283-01] gi|256636339|dbj|BAI02308.1| DNA helicase transcription-repair coupling factor [Acetobacter pasteurianus IFO 3283-03] gi|256639392|dbj|BAI05354.1| DNA helicase transcription-repair coupling factor [Acetobacter pasteurianus IFO 3283-07] gi|256642448|dbj|BAI08403.1| DNA helicase transcription-repair coupling factor [Acetobacter pasteurianus IFO 3283-22] gi|256645503|dbj|BAI11451.1| DNA helicase transcription-repair coupling factor [Acetobacter pasteurianus IFO 3283-26] gi|256648556|dbj|BAI14497.1| DNA helicase transcription-repair coupling factor [Acetobacter pasteurianus IFO 3283-32] gi|256651609|dbj|BAI17543.1| DNA helicase transcription-repair coupling factor [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654600|dbj|BAI20527.1| DNA helicase transcription-repair coupling factor [Acetobacter pasteurianus IFO 3283-12] Length = 1158 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 152/432 (35%), Positives = 228/432 (52%), Gaps = 32/432 (7%) Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317 EG+ + R PF T Q AI D+L+DMS M R++ GDVG GKT VAL A A Sbjct: 592 EGQWDEFCAR-FPFVETDDQARAIADVLEDMSSGRPMDRLVCGDVGFGKTEVALRAAFVA 650 Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV----EIITGNMPQAHRRKALERIAH 373 +GGQ ++ P +LA+QHY + I V ++TG A R+ IA Sbjct: 651 AMSGGQVAVVVPTTLLARQHYRTFAARFEGFPIKVAQLSRMVTGKEATAVRKG----IAD 706 Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433 G +I+IGTHAL ++Q+ L L+I+DE+ FGV + KL HVL ++ATP+PR Sbjct: 707 GSVNIVIGTHALLAKTVQFASLELLIIDEEQHFGVSHKEKLKALREDVHVLTLSATPLPR 766 Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQ 491 TL L+ G ++S I P R ++T I+P + I E I+R + G + + + P+ Sbjct: 767 TLQLSLSGVREMSLIATPPTDRLAVRTFIMPFDSVVIREAIQRERF---RGGQIFCVAPR 823 Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551 IE + + ER ++ + + HGR+S + E VM F +G +L++T ++ Sbjct: 824 IE-----DLDRLAERLTAIVPD--ARLIQAHGRLSATELERVMTEFSDGKYDILLSTNIV 876 Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLS 609 E G+D+ + +II A+ FGL QL+QLRGRVGRG++ L + LS ++ RL Sbjct: 877 ESGLDMPAVNTLIIHRADMFGLGQLYQLRGRVGRGKQRGYAYLTWPQTHVLSASAEKRLE 936 Query: 610 VLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA----RKD 662 V++ + GF +A DL R G +LG +QSG + + EL+ +LE A R D Sbjct: 937 VMQTLDTLGAGFTLASHDLDLRGAGNLLGDQQSGHVREVGI--ELYQQMLEDAVADLRSD 994 Query: 663 AKHILTQDPDLT 674 +D D T Sbjct: 995 KNRRAAEDWDWT 1006 >gi|323526062|ref|YP_004228215.1| transcription-repair coupling factor [Burkholderia sp. CCGE1001] gi|323383064|gb|ADX55155.1| transcription-repair coupling factor [Burkholderia sp. CCGE1001] Length = 1160 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 158/442 (35%), Positives = 231/442 (52%), Gaps = 21/442 (4%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G +E K K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL Sbjct: 585 GHAFALEPKDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVAL 644 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A AV G Q +++P +LA+QH + + + + ++ A+++I Sbjct: 645 RAAFIAVMGGKQVALLSPTTLLAEQHTQTFTDRFSDWPVRIAELSRFKSTKEVNAAIQQI 704 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 G I+IGTH L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPI Sbjct: 705 NEGSVDIVIGTHKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPI 764 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWIC 489 PRTL + G D S I P R IKT + R +E + R ++ L G + Y++ Sbjct: 765 PRTLGMALEGLRDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLH 821 Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549 ++E + N R ++E + IA+ HG+M + + E VM F +L+ TT Sbjct: 822 NEVETIE--NRRQMLEALVP-----EARIAVAHGQMHERELERVMRDFVAQRANVLLCTT 874 Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTR 607 +IE GIDV A+ I+I A+ FGLAQLHQLRGRVGR + LL H P L+K + R Sbjct: 875 IIETGIDVPSANTILIHRADKFGLAQLHQLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRR 934 Query: 608 LSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 L ++ E+ GF +A DL+ R GE+LG KQSG + Q L+ +L A K K Sbjct: 935 LEAIQQMEELGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALK 992 Query: 665 HILTQDPDLTSVRGQSIRILLY 686 ++PDLT+ + I L+ Sbjct: 993 D--GKEPDLTAPLAATTEINLH 1012 >gi|78043233|ref|YP_359072.1| transcription-repair coupling factor [Carboxydothermus hydrogenoformans Z-2901] gi|77995348|gb|ABB14247.1| transcription-repair coupling factor [Carboxydothermus hydrogenoformans Z-2901] Length = 1160 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 212/379 (55%), Gaps = 17/379 (4%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 P+ T Q AI+++ +DM + M R+L GDVG GKT VAL A AV G Q ++ Sbjct: 617 FPYEETPDQLKAIEEVKRDMEKPKVMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVAVLT 676 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQHY K+ + + +++ +++ ++ + G+ I+IGTH L QD Sbjct: 677 PTTLLAQQHYNTFKERFSGYPVEIRLLSRFQTAREQKEIIKELKRGKVDIVIGTHRLLQD 736 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 +Q+Y L L+IVDE+ RFGV Q+ +L VL +TATPIPRTL + +G D+S + Sbjct: 737 DVQFYDLGLMIVDEEQRFGVAQKERLKILTETVDVLTLTATPIPRTLHMALMGIRDLSVL 796 Query: 449 TEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 P R P++T ++ + I + I R L G + +++ ++ S+ V Sbjct: 797 NTPPENRFPVQTYVLEEDPFIIRDAIRR---ELGRGGQVFFVHNRV-----SDIDEVAAW 848 Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 SL + +A+ HG+M + E VM F +G +L++TT+IE GID+ + + +II+ Sbjct: 849 VQSLVPE--AKVAVAHGQMKEEQLERVMLEFISGKYDVLVSTTIIETGIDLPNVNTLIIK 906 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIA 621 NA+ FGLAQL+QLRGRVGR I+ L+Y L + + RL+ +K TE G +A Sbjct: 907 NADRFGLAQLYQLRGRVGRSNRIAYAYLMYEKDKVLREAAEKRLAAIKEFTEFGSGLKLA 966 Query: 622 EEDLKQRKEGEILGIKQSG 640 DL+ R G +LG +Q G Sbjct: 967 MRDLEIRGAGNLLGPEQHG 985 >gi|299820651|ref|ZP_07052540.1| transcription-repair coupling factor [Listeria grayi DSM 20601] gi|299817672|gb|EFI84907.1| transcription-repair coupling factor [Listeria grayi DSM 20601] Length = 1186 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 141/399 (35%), Positives = 216/399 (54%), Gaps = 19/399 (4%) Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309 E G + ++ ++ P+ T Q +IK+I +DM + M R+L GDVG GKT V Sbjct: 609 EKGYAFTPDSEMQREFEDAFPYQETDDQIRSIKEIKKDMERPRPMDRLLVGDVGYGKTEV 668 Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369 AL A A+ G Q + P ILAQQHYE +K+ Q I V +++ + + + LE Sbjct: 669 ALRAAFKAIMDGKQVAFLVPTTILAQQHYETMKERFQGFPIEVGLLSRFRTKKQQNETLE 728 Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429 + G I++GTH L + Y L ++VDE+ RFGV + K+ VL +TAT Sbjct: 729 GLKKGTVDIVVGTHRLLSKDVVYSDLGFLVVDEEQRFGVTHKEKIKTIRAKIDVLTLTAT 788 Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYW 487 PIPRTL ++ LG D+S I PA R P++T + N I E IER L+ + Y+ Sbjct: 789 PIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAERNNVMIREAIER---ELAREGQVYY 845 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 + ++E S+V++ + + + +A HG+M++ + ESV+ SF G +L+ Sbjct: 846 LYNRVE--------SIVQKADEISALVPDARVAFAHGQMTETELESVIVSFLEGEYDVLV 897 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNS 604 TT+IE G+D+ + + + +++A+ GL+QL+QLRGRVGR I+ +Y L + + Sbjct: 898 TTTIIETGVDIPNVNTLFVQDADRMGLSQLYQLRGRVGRSNRIAYAYFMYQKDKVLREEA 957 Query: 605 YTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640 RL +K TE GF IA DL R G ILG +Q G Sbjct: 958 EKRLQAIKEFTELGSGFKIAMRDLSIRGAGNILGAQQHG 996 >gi|220932952|ref|YP_002509860.1| transcription-repair coupling factor [Halothermothrix orenii H 168] gi|219994262|gb|ACL70865.1| transcription-repair coupling factor [Halothermothrix orenii H 168] Length = 1170 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 136/377 (36%), Positives = 207/377 (54%), Gaps = 15/377 (3%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q AI+++ DM M R+L GDVG GKT VA+ A AV G Q ++ P Sbjct: 624 PYEETPDQLKAIEEVKNDMESATPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQTAVLVP 683 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHY + +N I +E+I+ A +R+ L+++A G+ IIIGTH L Sbjct: 684 TTILAQQHYNTFSERMKNYPINIEMISRFKTPAEQREVLKKLAAGEVDIIIGTHRLLSRD 743 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGV + K+ VL MTATPIPRTL + +G D+S I Sbjct: 744 VVFNDLGLLIIDEEQRFGVSHKEKIKDLKRNVDVLTMTATPIPRTLHMALVGVRDMSVIE 803 Query: 450 EKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R PI+T I N+ E+I + ++ L + Y++ ++E+ +E +++++ Sbjct: 804 TPPENRYPIRTYIREFNK--ELIRDAVRKELGREGQVYFVHNRVEDIQEQA--TMIKKLV 859 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 +A+ HG+M++ E +M F N +L+ TT+IE G+D+ + + II+ A Sbjct: 860 P-----ECRVAVAHGQMNEHKLERLMLDFYNHQYDVLVCTTIIETGLDIPNVNTIIVNRA 914 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYH-----PPLSKNSYTRLSVLKNTEDGFLIAEE 623 + GLAQL+QLRGRVGR I+ LLY P +++ + N GF IA Sbjct: 915 DQMGLAQLYQLRGRVGRSNRIAYAYLLYEKDRVLPEVAEKRLRAIKEFTNLGSGFKIAMR 974 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R G +LG +Q G Sbjct: 975 DLEIRGAGNLLGPEQHG 991 >gi|329113371|ref|ZP_08242152.1| Transcription-repair-coupling factor [Acetobacter pomorum DM001] gi|326697196|gb|EGE48856.1| Transcription-repair-coupling factor [Acetobacter pomorum DM001] Length = 1142 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 149/420 (35%), Positives = 223/420 (53%), Gaps = 31/420 (7%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T Q AI D+L+DMS M R++ GDVG GKT VAL A A +GGQ ++ P Sbjct: 587 PFVETDDQARAIADVLEDMSSGRPMDRLVCGDVGFGKTEVALRAAFVAAMSGGQVAVVVP 646 Query: 330 IGILAQQHYEFIKKYTQNTQIIV----EIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +LA+QHY + I V ++TG A R+ IA G +I+IGTHAL Sbjct: 647 TTLLARQHYRTFAARFEGFPIKVAQLSRMVTGKEATAVRKG----IADGSVNIVIGTHAL 702 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445 ++Q+ L L+I+DE+ FGV + KL HVL ++ATP+PRTL L+ G ++ Sbjct: 703 LAKTVQFASLELLIIDEEQHFGVSHKEKLKALREDVHVLTLSATPLPRTLQLSLSGVREM 762 Query: 446 SKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503 S I P R ++T I+P + I E I+R + G + + + P+IE + + Sbjct: 763 SLIATPPTDRLAVRTFIMPFDSVVIREAIQRERF---RGGQIFCVAPRIE-----DLDRL 814 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 ER ++ + + HGR+S + E VM F +G +L++T ++E G+D+ + + Sbjct: 815 AERLTAIVPD--ARLIQAHGRLSATELERVMTEFSDGKYDILLSTNIVESGLDMPAVNTL 872 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GF 618 II A+ FGL QL+QLRGRVGRG++ L + LS ++ RL V++ + GF Sbjct: 873 IIHRADMFGLGQLYQLRGRVGRGKQRGYAYLTWPQTHVLSASAEKRLEVMQTLDTLGAGF 932 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA----RKDAKHILTQDPDLT 674 +A DL R G +LG +QSG + + EL+ +LE A R D +D D T Sbjct: 933 TLASHDLDLRGAGNLLGDQQSGHVREVGI--ELYQQMLEDAVADLRSDKNRRAAEDRDWT 990 >gi|270159982|ref|ZP_06188638.1| transcription-repair coupling factor [Legionella longbeachae D-4968] gi|289165275|ref|YP_003455413.1| Transcription-repair coupling factor [Legionella longbeachae NSW150] gi|269988321|gb|EEZ94576.1| transcription-repair coupling factor [Legionella longbeachae D-4968] gi|288858448|emb|CBJ12326.1| Transcription-repair coupling factor [Legionella longbeachae NSW150] Length = 1146 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 152/412 (36%), Positives = 219/412 (53%), Gaps = 21/412 (5%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 I LL + + + + G V+ K PF+ T Q +AI+ I++DM M R+ Sbjct: 568 IELLDLYAKREAQPGHQYQVDHSDYAKFASGFPFTETPDQLNAIEQIIKDMESSKPMDRL 627 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 + GDVG GKT VA+ A AV++ Q ++ P +LA QH+E + + I +E+++ Sbjct: 628 ICGDVGFGKTEVAMRAAFVAVQSNKQVCVLVPTTLLAGQHFESFRDRFADFPINIELLSR 687 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 L + G I+IGTH LFQ SI + L L+I+DE+HRFGV+Q+ + Sbjct: 688 FRSNKESEAVLAGLKSGTVDIVIGTHKLFQSSIAFKNLGLLIIDEEHRFGVKQKEHIKAL 747 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI----IPINRIDEVIE 473 T +L MTATPIPRTL + G DIS +T PA R IKT PI R E I Sbjct: 748 RTHVDILSMTATPIPRTLNMAMAGIRDISLMTTPPAKRLAIKTFWQEKKDPIVR--EAI- 804 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 L+ +L G + +++ +E + E SL + I HG+M + + E V Sbjct: 805 -LREIL-RGGQVFFLHNNVE-----TIERICEDLQSLVPE--AKIRSAHGQMRERELERV 855 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M F + +L+ TT+IE GID+ A+ III+ A+ FGLAQLHQLRGRVGR + Sbjct: 856 MSDFYHHRFNVLVCTTIIETGIDIPTANTIIIDRADKFGLAQLHQLRGRVGRSHHQAYAY 915 Query: 594 LLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 LL L+ ++ RL + + ED GF +A DL+ R GE+LG +QSG Sbjct: 916 LLTPNQKSLTSDAVKRLEAIVSLEDLGAGFTLATHDLEIRGAGELLGEEQSG 967 >gi|87125795|ref|ZP_01081638.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9917] gi|86166604|gb|EAQ67868.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9917] Length = 1184 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 140/422 (33%), Positives = 229/422 (54%), Gaps = 22/422 (5%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G +G +++ + P+ PT Q A D+ +DM Q M R++ GDVG GKT VA+ Sbjct: 593 GFAFPGDGPWQEELEDSFPYEPTPDQLKATADVKRDMEQPQPMDRLVCGDVGFGKTEVAI 652 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A+ A+ AG Q ++AP +LAQQH+ + + I V ++ + R+ LE + Sbjct: 653 RAIFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYPIKVALLNRFRTASERKAILEGL 712 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 G ++GTH L S + KL L++VDE+ RFGV Q+ K+ VL ++ATPI Sbjct: 713 KQGTIDAVVGTHQLLSKSTSFDKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPI 772 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491 PRTL ++ G ++S IT P R+PIKT + ++ + V ++ L G + +++ P+ Sbjct: 773 PRTLYMSLSGVREMSLITTPPPLRRPIKTHLAALDE-EAVRSAIRQELDRGGQVFYVVPR 831 Query: 492 IE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549 +E E+ + R ++ L + HG+M++ + ES M +F G +++ TT Sbjct: 832 VEGIEEVAAQLRQMLPGLKLL---------VAHGQMAEGELESAMVAFNGGEADVMLCTT 882 Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYT 606 ++E G+D+ + I+IE+A FGLAQL+QLRGRVGR I + L++P LS + Sbjct: 883 IVESGLDIPRVNTILIEDAHRFGLAQLYQLRGRVGR-SGIQAHAWLFYPGDASLSDAARQ 941 Query: 607 RLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIAR 660 RL ++ G+ +A D++ R G +LG++QSG + F + L +SL EI Sbjct: 942 RLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQG 1001 Query: 661 KD 662 +D Sbjct: 1002 QD 1003 >gi|167563120|ref|ZP_02356036.1| transcription-repair coupling factor [Burkholderia oklahomensis EO147] Length = 1157 Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 157/433 (36%), Positives = 230/433 (53%), Gaps = 27/433 (6%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q Sbjct: 595 KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 654 Query: 324 AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 +++P +LA+QH + FI ++ + E+ + A+ +I G I+IGT Sbjct: 655 VALLSPTTLLAEQHTQTFIDRFADWPVRVAELSRFKTAK-EVNAAIAQINEGSVDIVIGT 713 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G Sbjct: 714 HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 773 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498 D S I P R IKT + R +E + R ++ L G + Y++ ++E E +++ Sbjct: 774 RDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVETIENRQA 830 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 ++V + I I HG+M + + E VM F +L+ TT+IE GIDV Sbjct: 831 MLEALVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 881 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616 A+ II+ A+ FGLAQLHQLRGRVGR + LL H P L+K + RL ++ E+ Sbjct: 882 SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEE 941 Query: 617 ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 GF +A DL+ R GE+LG KQSG + Q L+ +L A K K+ ++PDL Sbjct: 942 LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDL 997 Query: 674 TSVRGQSIRILLY 686 T+ + I L+ Sbjct: 998 TAPLAATTEINLH 1010 >gi|220934531|ref|YP_002513430.1| transcription-repair coupling factor [Thioalkalivibrio sp. HL-EbGR7] gi|219995841|gb|ACL72443.1| transcription-repair coupling factor [Thioalkalivibrio sp. HL-EbGR7] Length = 1157 Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 152/413 (36%), Positives = 222/413 (53%), Gaps = 21/413 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + PF T Q AI+ +L+DM+ M R++ GDVG GKT VA+ A A +G Q ++ Sbjct: 604 SFPFEETPDQARAIEAVLEDMASPRPMDRVVCGDVGFGKTEVAMRAAFVAASSGQQVAVL 663 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY+ + I +E ++ + LE +A G+ I+IGTH L Q Sbjct: 664 VPTTLLAQQHYQNFSDRFADWPIRIESLSRFRSAKDTKAVLEGLADGRVDIVIGTHKLIQ 723 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++ +L LVI+DE+HRFGV+ + +L +L +TATPIPRTL + G D+S Sbjct: 724 GDVKFKRLGLVIIDEEHRFGVRHKERLKALRAEVDMLTLTATPIPRTLNMALSGLRDLSI 783 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R IKT I N I E I R + G + Y++ + E E R + E Sbjct: 784 IATPPMERHAIKTFISQWNDALIQEAITR---EIRRGGQVYFLHNAV-ESIERKAREIAE 839 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + I I HG+M + + E VM F + +L+ TT++E GIDV A+ III Sbjct: 840 LVPG------ADIGIAHGQMRESELEKVMLDFYHRRHNVLVCTTIVESGIDVPTANTIII 893 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GFLI 620 + A+ GL+QLHQLRGRVGR + L+ HP ++ ++ RL +++ ED GF + Sbjct: 894 DRADKLGLSQLHQLRGRVGRSHHRAYAYLITPHPSAMTPDAVKRLEAIESLEDLGVGFTL 953 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 A DL+ R GE+LG QSG + + L++ LLE A K K + PDL Sbjct: 954 ASHDLEIRGAGELLGEGQSGQTQEIGFT--LYNELLERAVKAMKK--GEMPDL 1002 >gi|238853544|ref|ZP_04643916.1| transcription-repair coupling factor [Lactobacillus gasseri 202-4] gi|238833840|gb|EEQ26105.1| transcription-repair coupling factor [Lactobacillus gasseri 202-4] Length = 1165 Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 142/431 (32%), Positives = 232/431 (53%), Gaps = 21/431 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW + + E +A + L +++ +K G + + + ++ P+ T Q Sbjct: 563 EWAKTKKRVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKEFEDAFPYPETPDQL 620 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I++I DM M R+L GDVG GKT VAL A A+ G Q +AP ILAQQH+ Sbjct: 621 RSIREIKADMESPKPMDRLLVGDVGFGKTEVALRAAFKAIRDGKQVAFLAPTTILAQQHF 680 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E ++ +N + +++ A + +E + +G+ +++GTH L +++ L L+ Sbjct: 681 ETMQDRFKNFPVNCALLSRFQTPAEVKAIIEGVKNGKIDMVVGTHRLLSKDVKFKDLGLL 740 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + +L + VL +TATPIPRTL ++ +G D+S + P R PI Sbjct: 741 IVDEEQRFGVKHKERLKELKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPTNRYPI 800 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 +T + + + V+ + VL E K+ +++ +I++ VV R L Sbjct: 801 QTYV--MEEMPSVVR--EAVLREMKRNGQVFFLHNRIDD-----IDKVVSRLEELIPE-- 849 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + I IHGRMS+ E +M F +L+ TT+IE G+D+ + + +I+ENA+H+GL+Q Sbjct: 850 AKIEYIHGRMSENQMEDIMYRFSRNEFDILVTTTIIETGVDMPNVNTMIVENADHYGLSQ 909 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGR+GR ++ LY P L++ RLS +++ TE GF IA DL R Sbjct: 910 LYQLRGRIGRSARLAYAYFLYQPNKVLTEIGEKRLSAIRDFTELGSGFKIAMRDLSIRGA 969 Query: 631 GEILGIKQSGM 641 G +LG +Q G Sbjct: 970 GNMLGKQQHGF 980 >gi|167570304|ref|ZP_02363178.1| transcription-repair coupling factor [Burkholderia oklahomensis C6786] Length = 1157 Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 157/433 (36%), Positives = 230/433 (53%), Gaps = 27/433 (6%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q Sbjct: 595 KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 654 Query: 324 AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 +++P +LA+QH + FI ++ + E+ + A+ +I G I+IGT Sbjct: 655 VALLSPTTLLAEQHTQTFIDRFADWPVRVAELSRFKTAK-EVNAAIAQINEGSVDIVIGT 713 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G Sbjct: 714 HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 773 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498 D S I P R IKT + R +E + R ++ L G + Y++ ++E E +++ Sbjct: 774 RDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVETIENRQA 830 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 ++V + I I HG+M + + E VM F +L+ TT+IE GIDV Sbjct: 831 MLEALVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 881 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616 A+ II+ A+ FGLAQLHQLRGRVGR + LL H P L+K + RL ++ E+ Sbjct: 882 SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEE 941 Query: 617 ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 GF +A DL+ R GE+LG KQSG + Q L+ +L A K K+ ++PDL Sbjct: 942 LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDL 997 Query: 674 TSVRGQSIRILLY 686 T+ + I L+ Sbjct: 998 TAPLAATTEINLH 1010 >gi|257886022|ref|ZP_05665675.1| transcription-repair coupling factor [Enterococcus faecium 1,231,501] gi|257821878|gb|EEV49008.1| transcription-repair coupling factor [Enterococcus faecium 1,231,501] Length = 1173 Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 142/431 (32%), Positives = 233/431 (54%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + L ++ +K G + ++ P+S T Q Sbjct: 570 EWTKTKRKVSSKIEDIADDLIKLYAARESEK--GYAFGPDDAYQKEFENAFPYSETDDQL 627 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I +DM ++ M R+L GDVG GKT VAL A A++ Q + P ILAQQHY Sbjct: 628 RSAAEIKRDMEKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 687 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + + + + + +++ + +++ +E++ GQ I++GTH + I++ L L+ Sbjct: 688 ETMLERFEGFPVNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGTHRILSKDIEFSDLGLL 747 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q VL +TATPIPRTL ++ LG D+S I PA R PI Sbjct: 748 IIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPI 807 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E I R + G + +++ ++E E+K + +V Sbjct: 808 QTYVMEKNPGAIREAIHR---EMGRGGQVFYLYNRVETIEQKVEEIQELVPE-------- 856 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + I HG+M++ E+ + F G +L+ATT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 857 -ARIGYAHGQMTEAQLENTLFEFIEGQYDVLVATTIIETGVDIPNANTLFVENADYMGLS 915 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 916 TLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRG 975 Query: 630 EGEILGIKQSG 640 G +LG +Q G Sbjct: 976 AGNLLGAQQHG 986 >gi|255019853|ref|ZP_05291929.1| Transcription-repair coupling factor [Acidithiobacillus caldus ATCC 51756] gi|254970782|gb|EET28268.1| Transcription-repair coupling factor [Acidithiobacillus caldus ATCC 51756] Length = 1149 Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 138/380 (36%), Positives = 215/380 (56%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q++AI ++ DM++ M R++ GDVG GKT VAL A A +G Q ++ Sbjct: 598 RFPFEETPDQQAAIDAVIADMTRTQPMDRLICGDVGFGKTEVALRAAFLAAASGAQVAVL 657 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E + I V +++ RR+ L ++A G I+IGTH L Sbjct: 658 VPTTLLAQQHFENFRDRFAGLPIRVTVLSRFQNARERREILAQLASGAIRIVIGTHRLLS 717 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++ L L+I+DE+HRFGV+Q+ ++ + VL +TATPIPRTL L+ G D+S Sbjct: 718 RDVRFCDLGLLILDEEHRFGVRQKEQIKALRSEVDVLTLTATPIPRTLNLSLAGLRDLSI 777 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I P R+P++T + + D V E + L G + Y++ ++ E+ + R +V Sbjct: 778 IATPPERRQPVRTFVQVFSE-DLVREACQRELHRGGQIYYLHNEVRDIERSAATLRRLVP 836 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + + + HG+M + + ESVM F + +L+ TT+IE GID A+ ++I Sbjct: 837 ---------EARLRVAHGQMPEAELESVMLDFYHQRFDILLCTTIIESGIDNPSANTMLI 887 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLI 620 + A+ FGLAQLHQLRGRVGR + + C L P +++++ RL +++ ED GF + Sbjct: 888 DRADRFGLAQLHQLRGRVGRSHQRAYCYLFTPDPRAMTEDARRRLDAIQSLEDLGVGFAL 947 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 948 ASHDLEIRGAGELLGDAQSG 967 >gi|116628945|ref|YP_814117.1| transcription-repair coupling factor [Lactobacillus gasseri ATCC 33323] gi|116094527|gb|ABJ59679.1| transcription-repair coupling factor [Lactobacillus gasseri ATCC 33323] Length = 1165 Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 142/431 (32%), Positives = 232/431 (53%), Gaps = 21/431 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW + + E +A + L +++ +K G + + + ++ P+ T Q Sbjct: 563 EWAKTKKRVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKEFEDAFPYPETPDQL 620 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I++I DM M R+L GDVG GKT VAL A A+ G Q +AP ILAQQH+ Sbjct: 621 RSIREIKADMESPKPMDRLLVGDVGFGKTEVALRAAFKAIRDGKQVAFLAPTTILAQQHF 680 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E ++ +N + +++ A + +E + +G+ +++GTH L +++ L L+ Sbjct: 681 ETMQDRFKNFPVNCALLSRFQTPAEVKAIIEGVKNGKIDMVVGTHRLLSKDVKFKDLGLL 740 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + +L + VL +TATPIPRTL ++ +G D+S + P R PI Sbjct: 741 IVDEEQRFGVKHKERLKELKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPTNRYPI 800 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 +T + + + V+ + VL E K+ +++ +I++ VV R L Sbjct: 801 QTYV--MEEMPSVVR--EAVLREMKRNGQVFFLHNRIDD-----IDKVVSRLEELIPE-- 849 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + I IHGRMS+ E +M F +L+ TT+IE G+D+ + + +I+ENA+H+GL+Q Sbjct: 850 AKIEYIHGRMSENQMEDIMYRFSRNEFDILVTTTIIETGVDMPNVNTMIVENADHYGLSQ 909 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGR+GR ++ LY P L++ RLS +++ TE GF IA DL R Sbjct: 910 LYQLRGRIGRSARLAYAYFLYQPNKVLTEIGEKRLSAIRDFTELGSGFKIAMRDLSIRGA 969 Query: 631 GEILGIKQSGM 641 G +LG +Q G Sbjct: 970 GNMLGKQQHGF 980 >gi|300934101|ref|ZP_07149357.1| transcription-repair coupling factor [Corynebacterium resistens DSM 45100] Length = 1255 Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 137/429 (31%), Positives = 227/429 (52%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W + R+ +AG++ L +Q G + +++ P++ T+ Q Sbjct: 637 DWKNTKRKARGAVRQIAGELVQLYATRQAAP--GYAFGADTPWQREMEEAFPYTETEDQF 694 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI+ + DM + M R++ GDVG GKT VA+ A AV++G Q ++ P +LAQQH Sbjct: 695 NAIEAVKADMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQSGKQVAVLVPTTLLAQQHL 754 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + Q+ + ++ A R+ ++ +A+G I+IGTH L Q IQ+ L LV Sbjct: 755 NTFTERMQDFPTTIRELSRFTSPAESREVIKAMANGDVDIVIGTHRLLQTGIQWKNLGLV 814 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + + T VL M+ATPIPRTL ++ G ++S I P R P+ Sbjct: 815 IVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPQDRHPV 874 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516 T + V ++ L + +++ +++ E+ ++ R +V + Sbjct: 875 LT-YVGQQEDKHVAAAIRRELLRDGQVFYVHNRVKTIERAAADLRRLVPE---------A 924 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 + + HG+MS+ E+ + F + +L+ TT++E G+D+ +A+ +I+ENA H GL+QL Sbjct: 925 RVVVAHGQMSEEQLETTVKGFWDREFDVLVCTTIVETGLDIANANTLIVENAHHMGLSQL 984 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 HQLRGRVGR E LY P L++ SY RL+ + D G +A +DL+ R G Sbjct: 985 HQLRGRVGRSHERGYAYFLYPPGEVLTETSYDRLTTIAQNNDLGAGMAVAMKDLEMRGAG 1044 Query: 632 EILGIKQSG 640 +LG +QSG Sbjct: 1045 NVLGAEQSG 1053 >gi|296111607|ref|YP_003621989.1| transcription-repair coupling factor [Leuconostoc kimchii IMSNU 11154] gi|295833139|gb|ADG41020.1| transcription-repair coupling factor [Leuconostoc kimchii IMSNU 11154] Length = 1174 Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 145/434 (33%), Positives = 235/434 (54%), Gaps = 28/434 (6%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W R+ E +A + L +++ ++ P + ++ P +P Q Sbjct: 565 QWAKTKRQVATKIEDIADDLIALYAQREAQQGYAYPPDDTDQLKFDTAFGYPETP--DQI 622 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I++I DM + M R+L GDVG GKT VAL A+ AV AG Q +AP IL QQHY Sbjct: 623 RSIEEIKLDMQKSRPMDRLLVGDVGFGKTEVALRAVFKAVHAGKQVAFLAPTTILVQQHY 682 Query: 339 EFI-KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 E I ++ +I + +++ A ++ + ++ + +++GTH L + + L L Sbjct: 683 ETILARFDDFPKIKIGVLSRFQTTARNKEVIRKLNAHEIDVVVGTHRLLSKDVDFADLGL 742 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +I+DE+ RFGV+ + +L Q + VL +TATPIPRTL + +G D+S I PA R P Sbjct: 743 LIIDEEQRFGVKHKERLKQLRHSVDVLTLTATPIPRTLNMAMVGARDLSVIETPPANRYP 802 Query: 458 IKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 I+T ++ D VI R ++ LS + +++ ++ + ++R S E Sbjct: 803 IQTYVL---EADWVIVRNAIEKELSRNGQVFYLHNRVAD---------IDRVASQIEDLV 850 Query: 516 SS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 S +A IHG+MS+ ES++ F NG +L+ TT+IE G+D+ +A+ +I+ENA+H GL Sbjct: 851 PSARVAAIHGQMSETQLESILYDFLNGNYDVLVTTTIIETGVDIPNANTLIVENADHMGL 910 Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKN----SYTRLSVLKN-TE--DGFLIAEEDLK 626 +QL+QLRGRVGR ++ Y P S+ + RL +++ TE GF IA DL Sbjct: 911 SQLYQLRGRVGRSTRLAYAYFTY--PFSRTPSEEAEKRLEAIRDFTELGSGFRIAMRDLS 968 Query: 627 QRKEGEILGIKQSG 640 R G++LG +Q G Sbjct: 969 IRGAGDLLGKQQHG 982 >gi|115371924|ref|ZP_01459237.1| transcription-repair coupling factor [Stigmatella aurantiaca DW4/3-1] gi|115371159|gb|EAU70081.1| transcription-repair coupling factor [Stigmatella aurantiaca DW4/3-1] Length = 769 Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 215/382 (56%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + F T Q AI+D+L DM + M R++ GDVG GKT VA+ A A Q ++ Sbjct: 219 DFEFEETPDQAKAIEDVLADMQKPTPMDRLVCGDVGYGKTEVAMRAAFKAALDRKQVAVL 278 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+ KK ++ I VE+I+G R+ L+R G+ I+IGTH L Sbjct: 279 VPTTVLAQQHFLSFKKRFKDYPITVEVISGLKKPPEVRELLKRAKEGRVDILIGTHKLLG 338 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + + L L+IVDE+ RFGV+Q+ +L + T VL +TATPIPRTL ++ G D+S Sbjct: 339 GDVAFKDLGLLIVDEEQRFGVKQKEQLKRLRTQVDVLTLTATPIPRTLHMSMSGVRDMSI 398 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSV 503 I P R+ I+T ++ + I E I+R ++ G + +++ +++ E R + Sbjct: 399 IATPPQDRRAIRTFVMKFDPQVIQEAIQR---EVARGGQVFFVHNRVQSIASMEKLLREL 455 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 V + SI + HG+M + E VM +F ++L+ T++IE GID+ A+ + Sbjct: 456 VPKV---------SIGVAHGQMGEGQLERVMLAFTEKQHQVLLCTSIIESGIDISSANTM 506 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GF 618 II A+ FGLAQL+QLRGRVGR +E + LL +++++ RL VL+N + GF Sbjct: 507 IINRADAFGLAQLYQLRGRVGRSKERAYAYLLVPARRAVTRDAQRRLEVLQNFTELGAGF 566 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 IA DL+ R G +LG KQSG Sbjct: 567 SIASHDLEIRGAGNLLGDKQSG 588 >gi|325523528|gb|EGD01838.1| transcription-repair coupling factor [Burkholderia sp. TJI49] Length = 827 Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 159/433 (36%), Positives = 229/433 (52%), Gaps = 27/433 (6%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q Sbjct: 266 KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 325 Query: 324 AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 +++P +LA+QH + F ++ IVE+ + A+ +I G I+IGT Sbjct: 326 VALLSPTTLLAEQHTQTFADRFADWPVRIVELSRFKTTK-EVNAAIAQINEGSVDIVIGT 384 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G Sbjct: 385 HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 444 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNF 500 D S I P R IKT + R +E + R ++ L G + Y++ ++E Sbjct: 445 RDFSVIATAPQKRLAIKTFV---RREEESVIREAMLRELKRGGQVYFLHNEVE------- 494 Query: 501 RSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +E ++ E + IAI HG+M + + E VM F +L+ TT+IE GIDV Sbjct: 495 --TIENRKAMLEELVPEARIAIAHGQMHERELERVMRDFVGQRANVLLCTTIIETGIDVP 552 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616 A+ II+ A+ FGLAQLHQLRGRVGR + LL H P L+K + RL ++ E+ Sbjct: 553 SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEE 612 Query: 617 ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 GF +A DL+ R GE+LG KQSG + Q L+ +L A K K+ ++PDL Sbjct: 613 LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDL 668 Query: 674 TSVRGQSIRILLY 686 T+ + I L+ Sbjct: 669 TAPLAATTEINLH 681 >gi|39995128|ref|NP_951079.1| transcription-repair coupling factor [Geobacter sulfurreducens PCA] gi|39981890|gb|AAR33352.1| transcription-repair coupling factor [Geobacter sulfurreducens PCA] gi|298504158|gb|ADI82881.1| transcription-repair coupling factor [Geobacter sulfurreducens KN400] Length = 1157 Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 134/381 (35%), Positives = 211/381 (55%), Gaps = 25/381 (6%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T Q +AI+D++ DM+ M R++ GDVG GKT VA+ AV G Q ++ P Sbjct: 618 YEETSDQLAAIEDVIADMTSNRPMDRLVCGDVGYGKTEVAMRGAFKAVMDGKQVAVLVPT 677 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LAQQH E + + +E+++ ++ LER+ G +IIGTH L Q+ + Sbjct: 678 TVLAQQHLETFRARLGAYPVTIEMVSRFRTPKEQKDILERVKKGTVDVIIGTHRLLQNDV 737 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + L L+IVDE+ RFGV + KL + A +L +TATPIPRTL ++ +G D+S I Sbjct: 738 TFKDLGLLIVDEEQRFGVTHKEKLKKYKAAVDILTLTATPIPRTLYMSLMGIRDLSIIDT 797 Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P R +KT + + DE+I E + L G + +++ + V+ + Sbjct: 798 PPVDRLAVKTFVARTS--DELIREAVLRELRRGGQVFFV------------HNRVQSIGA 843 Query: 510 LHEHF-----TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 +EH + IA+ HG+M + + E VM F +G LL+ TT+IE G+D+ A+ +I Sbjct: 844 WYEHLRRIVPEAKIAVGHGQMDEGELEKVMLGFMHGETNLLLCTTIIESGLDIPSANTLI 903 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619 ++ A+ FGLAQL+QLRGRVGR + + LL +S ++ RL +++ + GF Sbjct: 904 VDRADTFGLAQLYQLRGRVGRSRQRAYAYLLIPGEGAISSDARERLRIIQELNELGAGFR 963 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R G++LG KQSG Sbjct: 964 LATHDLEIRGAGDLLGAKQSG 984 >gi|172056088|ref|YP_001812548.1| transcription-repair coupling factor [Exiguobacterium sibiricum 255-15] gi|171988609|gb|ACB59531.1| transcription-repair coupling factor [Exiguobacterium sibiricum 255-15] Length = 1171 Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 135/399 (33%), Positives = 221/399 (55%), Gaps = 21/399 (5%) Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310 +G + Q + P+ T Q +I++I +DM + M R+L GDVG GKT VA Sbjct: 598 VGFAFPEDDDSTQAFEASFPYEETVDQLRSIEEIKKDMERPRPMDRLLCGDVGYGKTEVA 657 Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370 + A AV AG Q ++ P +LAQQHYE + + + I V +++ A + + Sbjct: 658 IRAAFKAVMAGKQVALLVPTTVLAQQHYETMLERFSDWPINVSVMSRFRSAAELKATKKG 717 Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430 + G +++GTH + +Q+ + L+I+DE+ RFGV+ + +L Q T VL +TATP Sbjct: 718 LKEGTIDVVVGTHRVLSKDVQFADVGLLIIDEEQRFGVKHKERLKQLKTNVDVLTLTATP 777 Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI--DEVIERLKVVLSEGKKAYWI 488 IPRTL ++ +G D+S + P R P++T ++ + I E +ER L G +A+++ Sbjct: 778 IPRTLHMSMIGIRDLSVLETPPENRYPVQTYVMEYDGIVMREALER---ELGRGGQAFFL 834 Query: 489 CPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 ++E E+K R++V + + HGRM++ + ES + +F G +L+ Sbjct: 835 YNRVEGIERKAEEIRALVPE---------ARVVTAHGRMTETELESQLIAFFEGDADVLV 885 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNS 604 +TT+IE GID+ + + +I+ +A+ GL+QL+QLRGRVGR ++ Y P L++ + Sbjct: 886 STTIIETGIDIPNVNTLIVNDADQMGLSQLYQLRGRVGRSSRVAYSYFTYRPQKRLTEVA 945 Query: 605 YTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640 +RL +K TE GF IA DL R G +LG +QSG Sbjct: 946 ESRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGSQQSG 984 >gi|296157812|ref|ZP_06840646.1| transcription-repair coupling factor [Burkholderia sp. Ch1-1] gi|295892058|gb|EFG71842.1| transcription-repair coupling factor [Burkholderia sp. Ch1-1] Length = 1160 Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 160/441 (36%), Positives = 228/441 (51%), Gaps = 19/441 (4%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G +E K K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL Sbjct: 585 GHAFALEPKDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVAL 644 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A AV G Q +++P +LA+QH + + + + ++ A+ +I Sbjct: 645 RAAFIAVMGGKQVALLSPTTLLAEQHTQTFTDRFSDWPVRIAELSRFKSTKEVNAAIHQI 704 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 G I+IGTH L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPI Sbjct: 705 NEGTVDIVIGTHKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPI 764 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICP 490 PRTL + G D S I P R IKT + D VI E + L G + Y++ Sbjct: 765 PRTLGMALEGLRDFSVIATAPQKRLAIKTFVR--REEDSVIREAMLRELKRGGQVYFLHN 822 Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550 ++E + N R ++E + IA+ HG+M + + E VM F +L+ TT+ Sbjct: 823 EVETIE--NRRQMLETLVP-----EARIAVAHGQMHERELERVMRDFVAQRANVLLCTTI 875 Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL 608 IE GIDV A+ I+I A+ FGLAQLHQLRGRVGR + LL H P L+K + RL Sbjct: 876 IETGIDVPTANTILIHRADKFGLAQLHQLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRRL 935 Query: 609 SVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665 ++ E+ GF +A DL+ R GE+LG KQSG + Q L+ +L A K K Sbjct: 936 EAIQQMEELGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKE 993 Query: 666 ILTQDPDLTSVRGQSIRILLY 686 ++PDLTS + I L+ Sbjct: 994 --GKEPDLTSPLAATTEINLH 1012 >gi|134295974|ref|YP_001119709.1| transcription-repair coupling factor [Burkholderia vietnamiensis G4] gi|134139131|gb|ABO54874.1| transcription-repair coupling factor [Burkholderia vietnamiensis G4] Length = 1151 Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 158/433 (36%), Positives = 230/433 (53%), Gaps = 27/433 (6%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q Sbjct: 596 KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 655 Query: 324 AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 +++P +LA+QH + F ++ IVE+ + A+ +I G I+IGT Sbjct: 656 VALLSPTTLLAEQHTQTFADRFADWPVRIVELSRFKTAK-EVNAAIAQINEGSVDIVIGT 714 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G Sbjct: 715 HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 774 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498 D S I P R IKT + R +E + R ++ L G + Y++ ++E E +++ Sbjct: 775 RDFSVIATAPQKRLAIKTFV---RREEESVIREAMLRELKRGGQVYFLHNEVETIENRKA 831 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 ++V + I I HG+M + + E VM F +L+ TT+IE GIDV Sbjct: 832 MLEALVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 882 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616 A+ II+ A+ FGLAQLHQLRGRVGR + LL H P L+K + RL ++ E+ Sbjct: 883 SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEE 942 Query: 617 ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 GF +A DL+ R GE+LG KQSG + Q L+ +L A K K+ ++PDL Sbjct: 943 LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDL 998 Query: 674 TSVRGQSIRILLY 686 T+ + I L+ Sbjct: 999 TAPLAATTEINLH 1011 >gi|17546361|ref|NP_519763.1| transcription-repair coupling factor protein [Ralstonia solanacearum GMI1000] gi|17428658|emb|CAD15344.1| probable transcription-repair coupling factor protein [Ralstonia solanacearum GMI1000] Length = 1157 Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 149/431 (34%), Positives = 221/431 (51%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W R+ A ++ L R+ ++ P+ + + F T Q Sbjct: 564 QWDKAKRKAAQQIRDTAAELLNLYARRALRQGFAFPLAPNDY--EAFAESFGFDETPDQA 621 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q ++AP +LA+QHY Sbjct: 622 AAITAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAMLAPTTLLAEQHY 681 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + + + I+ + A+E I G I+IGTH L +++ +L LV Sbjct: 682 QTLADRFADWPVRIAEISRFKNKKEIDAAIEAINAGTIDIVIGTHKLLSPDVKFNRLGLV 741 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+HRFGV+Q+ L VL +TATPIPRTL + G D S I P R I Sbjct: 742 IIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 801 Query: 459 KTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 KT + R ++ + R ++ L G + Y++ ++E E K + +V Sbjct: 802 KTFV---RREEDGVLREAILRELKRGGQVYFLHNEVETIENKRAKLEELVPE-------- 850 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + +A+ HG+M + + E VM F +L+ TT+IE GIDV A+ I+I A+ FGLA Sbjct: 851 -ARVAVAHGQMHERELERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRADKFGLA 909 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629 QLHQLRGRVGR + LL H L+K S RL ++ E+ GF +A DL+ R Sbjct: 910 QLHQLRGRVGRSHHQAYAYLLVHDADGLTKQSQRRLEAIQQMEELGSGFYLAMHDLEIRG 969 Query: 630 EGEILGIKQSG 640 GE+LG KQSG Sbjct: 970 AGEVLGDKQSG 980 >gi|295692138|ref|YP_003600748.1| transcription-repair coupling factor [Lactobacillus crispatus ST1] gi|295030244|emb|CBL49723.1| Transcription-repair coupling factor [Lactobacillus crispatus ST1] Length = 1164 Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 142/429 (33%), Positives = 233/429 (54%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ + E +A + L +++ +K G + + + ++ P+ T Q Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKQFEDAFPYPETPDQL 620 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 ++K+I QDM M R+L GDVG GKT VAL A A++ Q + P ILAQQHY Sbjct: 621 RSVKEIKQDMESSKPMDRLLVGDVGFGKTEVALRAAFKAIQDNKQVAFLVPTTILAQQHY 680 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I+ ++ + +++ ++ +E + +G+ +++GTH + +++ L L+ Sbjct: 681 ETIQDRFKDFPVNTAMLSRFQTPVESKEIIEGLKNGKVDLVVGTHRILSQDVKFKNLGLL 740 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + KL Q VL +TATPIPRTL ++ +G D+S + P R PI Sbjct: 741 IVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800 Query: 459 KTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T + + +I V+ L+ + +G + +++ +I S+ VE+ L + Sbjct: 801 QTYV--MEQIPSVVRDACLREMQRDG-QVFYLHNRI-----SDIDETVEKLQELMPQ--A 850 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 IA HGRMS E ++ F N +L+ TT+IE GID+ + + +IIE+A+H+GL+QL Sbjct: 851 RIAAAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQL 910 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGR+GR ++ LY P L++ RL +++ TE GF IA DL R G Sbjct: 911 YQLRGRIGRSARLAYAYFLYKPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAG 970 Query: 632 EILGIKQSG 640 +LG +Q G Sbjct: 971 NMLGAQQHG 979 >gi|153811642|ref|ZP_01964310.1| hypothetical protein RUMOBE_02034 [Ruminococcus obeum ATCC 29174] gi|149832383|gb|EDM87468.1| hypothetical protein RUMOBE_02034 [Ruminococcus obeum ATCC 29174] Length = 1108 Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 148/464 (31%), Positives = 250/464 (53%), Gaps = 19/464 (4%) Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EW + +R R A + + L +R++ + + P V + +++ P+ T+ Q Sbjct: 514 EWKKTKSRVRGAVQNIARELVELYAVRQEKEGYVCGPDTVWQREFEEMF---PYEETEDQ 570 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 +AI+D +DM M R++ GDVG GKT VAL A AV+ Q V + P ILAQQ Sbjct: 571 LAAIEDTKKDMESTKIMDRLVCGDVGYGKTEVALRAAFKAVQESRQVVYLVPTTILAQQV 630 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y + + + V+++ A ++K + + GQ I++GTH + ++Y L L Sbjct: 631 YNTFIQRMKEFPVRVDLLCRFRTAAQQKKTIADLKKGQVDIVVGTHRVLSKDVEYKNLGL 690 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ +G D+S + E P R P Sbjct: 691 LIIDEEQRFGVVHKEKIKQLKKDIDVLTLTATPIPRTLHMSMIGIRDMSVLEEPPMDRVP 750 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517 I+T ++ + + V E + L G + Y++ ++ ++ V R L + Sbjct: 751 IQTYVMEYDE-ETVREAINRELRRGGQVYYVYNRV-----NDIADVTTRIAKLLPD--AR 802 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 + HG+MS+ + E+VM +F NG +L++TT+IE G+D+ + + +II +++ +GL+QL+ Sbjct: 803 VDFAHGQMSERELEAVMYAFINGDIDVLVSTTIIETGLDISNVNTMIIHDSDRYGLSQLY 862 Query: 578 QLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632 QLRGR+GR + L+Y + L + + RLS ++ D GF IA DL+ R G Sbjct: 863 QLRGRIGRSNRTAYAFLMYRRNTMLKETAEKRLSAIREYTDLGSGFKIAMRDLELRGAGN 922 Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676 +LG +Q G + +L+ +L A K+AK I T + T++ Sbjct: 923 LLGAEQHGHMNAV--GYDLYCKMLSEAVKEAKGIHTMEDFETTI 964 >gi|269926461|ref|YP_003323084.1| transcription-repair coupling factor [Thermobaculum terrenum ATCC BAA-798] gi|269790121|gb|ACZ42262.1| transcription-repair coupling factor [Thermobaculum terrenum ATCC BAA-798] Length = 1150 Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 144/416 (34%), Positives = 226/416 (54%), Gaps = 21/416 (5%) Query: 235 AGQIALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292 A Q+A L++ +EI G + + ++ ++ P+ T Q +AI+D+ DM Sbjct: 562 ADQLAKELLQLYAAREIAKGHSFSPDNELHKEFESAFPYVETDDQLAAIEDVKADMESPK 621 Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352 M R++ GDVG GKT VAL A AV G Q ++ P +LA QHYE + I V Sbjct: 622 PMDRLICGDVGYGKTEVALRAAFKAVADGKQVAVLVPTTVLALQHYETFRSRFNPFGIRV 681 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 E+++ + R + LE + G I+IGTH + Q ++ + L LVIVDE+ RFGV+ + Sbjct: 682 EMLSRLRTKKERDQVLEDLQKGNVDIVIGTHTILQKNVVFKDLGLVIVDEEQRFGVKHKE 741 Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 L Q T VL +TATPIPRTL + G D+S I P R P+ T I+P N D +I Sbjct: 742 TLKQIRTQVDVLTLTATPIPRTLQMALSGVRDMSVIETAPEDRLPVYTYIVPKN--DSII 799 Query: 473 ERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDID 529 R ++ L G + +++ ++++ + + + L E + I + HG+M + Sbjct: 800 -RDSIIRELERGGQVFYVHNRVQD--------IYKVAHKLQEMVPEARITVAHGQMPEQQ 850 Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589 E VM F + +L+ TT+IE G+D+ +A+ +I+++A H GLAQL+QLRGRVGR Sbjct: 851 LEQVMLDFMHHHYDVLVCTTIIESGLDIPNANTLIVDDATHMGLAQLYQLRGRVGRSSNR 910 Query: 590 SSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 + L+Y P +++++ RL + GF +A +DL+ R G LG +QSG Sbjct: 911 AYAYLMYRPDARMTEDAQKRLEAISEATQLGAGFRVAMKDLEIRGAGNFLGPEQSG 966 >gi|52841189|ref|YP_094988.1| transcription repair coupling factor [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628300|gb|AAU27041.1| transcription repair coupling factor [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 1153 Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 144/384 (37%), Positives = 203/384 (52%), Gaps = 17/384 (4%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K PF+ T Q AI+ I++DM M R++ GDVG GKT VA+ A AV+ G Q Sbjct: 595 KFASGFPFTETPDQLQAIEQIIKDMQSPRPMDRLICGDVGFGKTEVAMRAAFVAVQNGKQ 654 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 I+AP +LA QH+E + + + +E+++ L + G+ I+IGTH Sbjct: 655 VCILAPTTLLAGQHFESFRDRFADFPVNIELLSRFRSNKESEAVLAALQSGKVDIVIGTH 714 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443 LFQ++I + L L+I+DE+HRFGV+Q+ + T +L MTATPIPRTL + G Sbjct: 715 KLFQNNISFKNLGLLIIDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLNMAMAGIR 774 Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503 DIS I PA R IKT N + L+ +L G+ Y N Sbjct: 775 DISLIATPPAKRLAIKTFWQEKNDLTIREAILREILRGGQVFYL----------HNNVQT 824 Query: 504 VERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 +ER E + I HG+M + E +M F + +L+ TT+IE GID+ A+ Sbjct: 825 IERVCQDLEALVPEAKIQSAHGQMRERQLERIMSDFYHHRFNVLVCTTIIETGIDIPTAN 884 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED--- 616 III+ A+ FGLAQLHQLRGRVGR + LL L+ ++ RL + + ED Sbjct: 885 TIIIDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPNEKLLTPDAVKRLEAIVSLEDLGA 944 Query: 617 GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 945 GFTLATHDLEIRGAGELLGEEQSG 968 >gi|161506855|ref|YP_001576809.1| transcriptional repair coupling factor [Lactobacillus helveticus DPC 4571] gi|160347844|gb|ABX26518.1| transcriptional repair coupling factor [Lactobacillus helveticus DPC 4571] Length = 1165 Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 143/430 (33%), Positives = 237/430 (55%), Gaps = 19/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ + E +A + L +++ +K G + + + ++ P++ T Q Sbjct: 563 EWAKIKRKVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKQFEDAFPYAETPDQL 620 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +IK+I +DM + M R++ GDVG GKT VAL A A++ Q +AP ILAQQHY Sbjct: 621 RSIKEIKEDMEKPKPMDRLVVGDVGFGKTEVALRAAFKAIQDNKQVAFLAPTTILAQQHY 680 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I+ ++ + +++ A ++ +E + G+ +++GTH L +++ L L+ Sbjct: 681 ETIQDRFKDFPVNTAMLSRFQTLAESKEIIEGLKEGKIDLVVGTHRLLSKDVEFKDLGLL 740 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + +L Q VL +TATPIPRTL ++ +G D+S + P R PI Sbjct: 741 IVDEEQRFGVKHKERLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800 Query: 459 KTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T + + +I V+ L+ + +G + +++ +I S+ VE+ L + + Sbjct: 801 QTYV--MEQIPSVVRDACLREMQRDG-QVFYLHNRI-----SDIDETVEKLQQLIPN--A 850 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 IA HGRMS E ++ F N +L+ TT+IE GID+ + + +IIE+A+H+GL+QL Sbjct: 851 RIASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQL 910 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGR+GR ++ LY P L++ RL +++ TE GF IA DL R G Sbjct: 911 YQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAG 970 Query: 632 EILGIKQSGM 641 +LG +Q G Sbjct: 971 NMLGAQQHGF 980 >gi|323701604|ref|ZP_08113276.1| transcription-repair coupling factor [Desulfotomaculum nigrificans DSM 574] gi|323533377|gb|EGB23244.1| transcription-repair coupling factor [Desulfotomaculum nigrificans DSM 574] Length = 1169 Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 146/420 (34%), Positives = 232/420 (55%), Gaps = 27/420 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 P+ T Q AI ++ +DM ++ M R+L GDVG GKT VAL A AV Q ++ Sbjct: 622 QFPYEETPDQLRAIAEVKRDMEKERPMDRLLCGDVGYGKTEVALRAAFKAVMDNKQVAVL 681 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHY ++ N I +E+++ +R+ L +A G+ ++IGTH L Q Sbjct: 682 VPTTILAQQHYNTFRERFANYPIRIEMLSRFRTPKEQRQVLAGLATGEVDVVIGTHRLVQ 741 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D + + L L++VDE+ RFGV + +L Q VL +TATPIPRTL ++ +G D S Sbjct: 742 DDVIFKDLGLLVVDEEQRFGVAHKERLKQMRKNVDVLTLTATPIPRTLHMSLVGVRDTSV 801 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 + P R P++T ++ + I E I R L+ G + Y++ ++ + ++ Sbjct: 802 LETPPEERFPVQTYVLEEDPTLIREAIRR---ELNRGGQVYFVHNRVMD---------LD 849 Query: 506 RFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 R + + IA+ HG+M + + E +M F +G +L+ TT++E G+D+ + + + Sbjct: 850 RLAGWLQDLVPEARIAVAHGQMKEDELEQIMLEFMDGAYDVLVCTTIVETGLDISNVNTL 909 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGF 618 I+++A+HFGL+QL+QLRGRVGR ++ L+ L++ S RLS ++ TE GF Sbjct: 910 IVKDADHFGLSQLYQLRGRVGRTNRLAYAYFLFRRDKVLTEVSERRLSAIREFTEFGSGF 969 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQP--ELHDSLLEIARKDAKHILTQDPDLTSV 676 IA DL+ R G ILG +Q G IA+ +L+ LLE A +A+ + P T+V Sbjct: 970 KIAMRDLEIRGAGNILGAEQHGH----IAEVGFDLYCRLLEEAVHEARGEKVEQPVDTAV 1025 >gi|256828791|ref|YP_003157519.1| transcription-repair coupling factor [Desulfomicrobium baculatum DSM 4028] gi|256577967|gb|ACU89103.1| transcription-repair coupling factor [Desulfomicrobium baculatum DSM 4028] Length = 1146 Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 133/378 (35%), Positives = 213/378 (56%), Gaps = 19/378 (5%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T+ QE AI D+L DM + M R++ GDVG GKT VAL A AV G Q ++ P Sbjct: 600 FEETRDQEKAIADVLADMEKPEPMDRLVCGDVGFGKTEVALRAAFRAVLDGKQVALLCPT 659 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA+QH++ ++ + I V +++ +P A +++ LE GQ ++IGTH + + Sbjct: 660 TVLAEQHFQTFRQRMEPFSITVGLLSRFVPAAGQKRTLEAARRGQVDVLIGTHRMLSKDV 719 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L L+I+DE+ RFGV+ + ++ + + VL +TATPIPRTL L+ G +S I Sbjct: 720 EFANLALLILDEEQRFGVKHKERIKKMRSTIDVLTLTATPIPRTLQLSLSGIRGLSVIET 779 Query: 451 KPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P RKP++T ++ + ++ ++ER L+ G + +W+ +++ VVE + Sbjct: 780 PPRDRKPVETSLLERDPAQLKVILER---ELARGGQVFWVYNRVQ-----GLERVVEFVS 831 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 SL + + + HG+M D E M F +G +L+ T +IE G+D A+ +I++ A Sbjct: 832 SLVP--GARVGMGHGQMKAHDLEETMHKFWHGELDVLVCTAIIESGLDFPRANTLIVDQA 889 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK---NSYTRLSVLKNTE---DGFLIAE 622 + FGL QL+QLRGRVGR E + + P L + S RL ++ + + GF +A Sbjct: 890 QLFGLGQLYQLRGRVGRSSEQAYAYFII-PDLDRLQETSRKRLKIILDMDYLGAGFKVAM 948 Query: 623 EDLKQRKEGEILGIKQSG 640 EDL+ R G ILG QSG Sbjct: 949 EDLRLRGAGNILGEAQSG 966 >gi|257484416|ref|ZP_05638457.1| transcription-repair coupling factor [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 534 Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 140/361 (38%), Positives = 202/361 (55%), Gaps = 17/361 (4%) Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346 DM M R++ GDVG GKT VA+ A AV G Q I+ P +LAQQHY + Sbjct: 2 DMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTTLLAQQHYNSFRDRFA 61 Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 + + VE+++ A+ +A G+ I+IGTH L QD ++ L LVI+DE+HRF Sbjct: 62 DWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQDDVKIKNLGLVIIDEEHRF 121 Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466 GV+Q+ +L + +L +TATPIPRTL + G D+S I PA R ++T ++ N Sbjct: 122 GVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQN 181 Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGR 524 + + E L L G + Y++ ++ EK ++ +V + I I HG+ Sbjct: 182 K-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPE---------ARIGIGHGQ 231 Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584 M + + E VM F + +LIA+T+IE GIDV A+ IIIE A+ FGLAQLHQLRGRVG Sbjct: 232 MRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQLRGRVG 291 Query: 585 RGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQS 639 R + LL P ++ ++ RL + NT+D GF++A DL+ R GE+LG QS Sbjct: 292 RSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGDGQS 351 Query: 640 G 640 G Sbjct: 352 G 352 >gi|218777910|ref|YP_002429228.1| transcription-repair coupling factor [Desulfatibacillum alkenivorans AK-01] gi|218759294|gb|ACL01760.1| transcription-repair coupling factor [Desulfatibacillum alkenivorans AK-01] Length = 1179 Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 139/381 (36%), Positives = 213/381 (55%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 N + T Q AI D+L DM + M R++ GDVG GKT VAL A AV Q + Sbjct: 633 NFEYEETPDQAKAINDVLADMENRRPMDRLICGDVGYGKTEVALRASFKAVSDSKQTAFV 692 Query: 328 APIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 P IL++QHY F+K+Y + + + + A +++ L+ + +G I+IGTH++ Sbjct: 693 TPTTILSEQHYRTFLKRY-EGYPVKIACLNRFRKAAEKKEILKGLENGDIDIVIGTHSVL 751 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 Q S+Q+ L LVI+DE+ RFGV+ + L + VL +TATPIPRTL ++ +G DI+ Sbjct: 752 QKSVQFKDLRLVIIDEEQRFGVKHKETLKKIRATVDVLALTATPIPRTLHMSMVGIRDIT 811 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVI--ERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504 I P R+PI T +++ DEVI E ++ L+ + +++ +++ + ++ Sbjct: 812 VINTPPEQRRPITTY---VSKFDEVIAAEAIRAELARKGQVFFVHNRVQ-----SIDAMA 863 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 R L + + + HG+MS+ E VM F N LL+ T +IE G+D+ A+ I+ Sbjct: 864 GRLKRLVPE--ARVGVAHGQMSETMLEKVMIKFVNHEIDLLVCTAIIESGLDIPAANTIL 921 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619 I A+ FGLAQ++QLRGRVGRG++ + L L++++ RL VL D GF Sbjct: 922 INRADMFGLAQIYQLRGRVGRGDDQAYAYLFIPDESVLTRDAQRRLKVLMEHSDLGAGFA 981 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 IA DL+ R G ILG QSG Sbjct: 982 IAMSDLQIRGGGTILGSAQSG 1002 >gi|87199999|ref|YP_497256.1| transcription-repair coupling factor [Novosphingobium aromaticivorans DSM 12444] gi|87135680|gb|ABD26422.1| transcription-repair coupling factor [Novosphingobium aromaticivorans DSM 12444] Length = 1164 Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 153/442 (34%), Positives = 240/442 (54%), Gaps = 28/442 (6%) Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 +AGQ+ + ++ + +P++ + P+ T+ QE AI D+L DM++ Sbjct: 575 MAGQLMATAAHRALRQGLVLPVDPASY--GPFIDRFPWDETEDQERAIDDVLGDMAEGKP 632 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY-EFIKKYTQNTQIIV 352 M R++ GDVG GKT VAL A A G Q ++AP +LA+QHY F++++ + + Sbjct: 633 MDRLVCGDVGFGKTEVALRAAFVAAMQGVQVAVVAPTTLLARQHYANFVERFN-GFPLQI 691 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 ++ +P + +A G+ I+IGTHAL S+++ +L LVIVDE+ RFGV + Sbjct: 692 GRLSRLVPAKEASETRAGLADGRVDIVIGTHALLSKSVEFKRLGLVIVDEEQRFGVTHKE 751 Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 KL + HVL +TATPIPRTL + G ++S I P R +T ++P D+++ Sbjct: 752 KLKELKADVHVLTLTATPIPRTLQMAMSGLRELSTIQTPPVDRLATRTYVMP---WDDMV 808 Query: 473 ERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529 R + +L E G +++ + P+I + E R N F ++ HG+MS + Sbjct: 809 MR-EALLREHQRGGQSFIVVPRIADMPELE---EWLRLNVPEVRFVTA----HGQMSPTE 860 Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589 E M +F ++L++TT++E GID+ A+ I+I A+ FGLAQL+QLRGRVGRG +I Sbjct: 861 VEDRMGAFYEKKYEVLLSTTIVESGIDIPSANTIVIHRADRFGLAQLYQLRGRVGRG-KI 919 Query: 590 SSCILLYHP---PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK 643 + L P LS+ + RL VL + + GF +A DL R G +LG +QSG K Sbjct: 920 RAYAYLTVPEDMALSEVAEKRLKVLGDLDSLGAGFQLASHDLDIRGAGNLLGDEQSGHIK 979 Query: 644 ---FLIAQPELHDSLLEIARKD 662 F + Q L D++L D Sbjct: 980 EVGFELYQSMLEDAILAAKAGD 1001 >gi|170692379|ref|ZP_02883542.1| transcription-repair coupling factor [Burkholderia graminis C4D1M] gi|170142809|gb|EDT10974.1| transcription-repair coupling factor [Burkholderia graminis C4D1M] Length = 1160 Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 157/442 (35%), Positives = 231/442 (52%), Gaps = 21/442 (4%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G +E K K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL Sbjct: 585 GHAFALEPKDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVAL 644 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A AV G Q +++P +LA+QH + + + + ++ A+++I Sbjct: 645 RAAFIAVMGGKQVALLSPTTLLAEQHTQTFTDRFSDWPVRIAELSRFKSTKEVNAAIQQI 704 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 G I+IGTH L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPI Sbjct: 705 NEGSVDIVIGTHKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPI 764 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWIC 489 PRTL + G D S I P R IKT + R +E + R ++ L G + Y++ Sbjct: 765 PRTLGMALEGLRDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLH 821 Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549 ++E + N R ++E + IA+ HG+M + + E VM F +L+ TT Sbjct: 822 NEVETIE--NRRQMLEALVP-----EARIAVAHGQMHERELERVMRDFVAQRANVLLCTT 874 Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTR 607 +IE GIDV A+ I+I ++ FGLAQLHQLRGRVGR + LL H P L+K + R Sbjct: 875 IIETGIDVPSANTILIHRSDKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQGLTKQAQRR 934 Query: 608 LSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 L ++ E+ GF +A DL+ R GE+LG KQSG + Q L+ +L A K K Sbjct: 935 LEAIQQMEELGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALK 992 Query: 665 HILTQDPDLTSVRGQSIRILLY 686 ++PDLT+ + I L+ Sbjct: 993 D--GKEPDLTAPLAATTEINLH 1012 >gi|170017776|ref|YP_001728695.1| transcription-repair coupling factor [Leuconostoc citreum KM20] gi|169804633|gb|ACA83251.1| Transcription-repair coupling factor [Leuconostoc citreum KM20] Length = 1178 Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 145/433 (33%), Positives = 233/433 (53%), Gaps = 26/433 (6%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ A E +A + L +++ P + ++ P +P Q Sbjct: 568 EWAKTKRQVAAKIEDIADDLLDLYAQREALSGYAFPPDDTAQLQFDTTFGYPETP--DQI 625 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I++I DM ++ M R+L GDVG GKT VAL A+ A AG Q +AP IL QQHY Sbjct: 626 RSIEEIKADMQKERPMDRLLVGDVGFGKTEVALRAVFKAAHAGKQVAFLAPTTILVQQHY 685 Query: 339 E-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 E + +++ + I + +++ A +K ++ + + +++GTH L + + L L Sbjct: 686 ETMLARFSDFSDIRIGVLSRFQTPAQNKKVIKELEAHELDVVVGTHRLLSQDVNFADLGL 745 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +I+DE+ RFGV+ + +L Q VL +TATPIPRTL + +G D+S I PA R P Sbjct: 746 LIIDEEQRFGVKHKERLKQLRNNVDVLTLTATPIPRTLNMAMVGARDLSVIETPPANRYP 805 Query: 458 IKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 I+T ++ D I R ++ L+ + +++ ++ + ++R S E Sbjct: 806 IQTYVL---EADWTIVRNAIEKELARDGQVFYLHNRVAD---------LDRVASQIEDLV 853 Query: 516 SS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 S +A IHG+MS+ ESV+ F NG +L+ TT+IE G+D+ +A+ +I+ENA+H GL Sbjct: 854 PSARVASIHGQMSETQLESVLYDFLNGNYDVLVTTTIIETGVDIPNANTLIVENADHMGL 913 Query: 574 AQLHQLRGRVGRGEEISSCILLY---HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQ 627 +QL+QLRGRVGR ++ Y P S+ + RL +++ TE GF IA DL Sbjct: 914 SQLYQLRGRVGRSTRLAYAYFTYPFTRTP-SEEAEKRLEAIRDFTELGSGFRIAMRDLSI 972 Query: 628 RKEGEILGIKQSG 640 R G++LG +Q G Sbjct: 973 RGAGDLLGKQQHG 985 >gi|320102612|ref|YP_004178203.1| transcription-repair coupling factor [Isosphaera pallida ATCC 43644] gi|319749894|gb|ADV61654.1| transcription-repair coupling factor [Isosphaera pallida ATCC 43644] Length = 1111 Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 151/439 (34%), Positives = 231/439 (52%), Gaps = 20/439 (4%) Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 LA ++ L ++Q + I +P V+ + ++ + P+ T Q +AI+ I +D Q Sbjct: 532 LAAELIDLQAQRQARPGIALPA-VDSHLMREFAASFPYEETPDQLAAIEAIREDQIQPRP 590 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R++ GDVG GKT VA+ A AV+AG Q ++ P +L +QH ++ +++E Sbjct: 591 MDRLVCGDVGFGKTEVAMRAAFRAVDAGKQVAVLVPTTVLCEQHTRSFRERMAEYPVVIE 650 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 I + R LER A G+ I+IGTH + Q +++ L LVI+DE+ RFGV+ + Sbjct: 651 SINRFRTKKQIRDVLERTAQGKVDILIGTHRIVQKDVRFKDLGLVIIDEEQRFGVEDKEW 710 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 L T VL ++ATPIPRTL ++ LG DIS + P GRK I+T I R DE I Sbjct: 711 LKSLRTTVDVLTLSATPIPRTLHMSLLGIRDISNLETPPPGRKAIETRIC---RFDEAII 767 Query: 474 RLKV--VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531 R + L+ + Y++ ++ + ++ +R + + I HG+M E Sbjct: 768 RQAIHRELNRNGQVYFVHNRVH-----DLDAIADRLRGIVPE--ARIVTAHGQMPGDQLE 820 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 M +F +L+ATT+IE G+D+ +A+ I I A+ GLA LHQLRGRVGR + Sbjct: 821 KAMLAFVRHQADILVATTIIESGLDIPNANTIFINEADRHGLADLHQLRGRVGRSRNRAY 880 Query: 592 CILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646 LL H ++ + RL ++ + GF IA DL+ R G ILG +QSG Sbjct: 881 AYLLLHESRAVTPEAARRLKAIEEFTELGAGFKIALRDLEIRGAGNILGAEQSG--HIEA 938 Query: 647 AQPELHDSLLEIARKDAKH 665 EL+ SLLE A ++ H Sbjct: 939 VGYELYCSLLETAVRELTH 957 >gi|302380838|ref|ZP_07269301.1| transcription-repair coupling factor [Finegoldia magna ACS-171-V-Col3] gi|302311333|gb|EFK93351.1| transcription-repair coupling factor [Finegoldia magna ACS-171-V-Col3] Length = 1168 Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 152/447 (34%), Positives = 243/447 (54%), Gaps = 30/447 (6%) Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288 + DE+ + L R + K G + + + ++ + P+ T SQ +I++I DM Sbjct: 586 SVDEMADDLVELYSKRAKLK---GYQFSQDTEWQREFEDSFPYEETDSQVRSIEEIKSDM 642 Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348 M R+L GDVG GKT VA+ A A+ G Q + P ILAQQH+ IK+ ++ Sbjct: 643 ESDRPMDRLLCGDVGYGKTEVAIRACFKAIMDGKQVAFLVPTTILAQQHFNTIKERFRDY 702 Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408 I VE+++ + A +++ ++ + G +++GTH + ++++ L L+++DE+ RFGV Sbjct: 703 PIRVEMMSRFVSPARQKQIMKDVQRGLVDLLVGTHRILSKNLKFKDLGLLVIDEEQRFGV 762 Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-- 466 + + KL VL ++ATPIPRTL + G D+S + E P R PI T + N Sbjct: 763 RHKEKLKSMRENVDVLTLSATPIPRTLQMGLTGIRDMSLLEEPPEDRTPISTYVTEYNPS 822 Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF--RSVVERFNSLHEHFTSSIAIIHGR 524 I + I R L G + Y++ +IE+ + F + +V N IAI HGR Sbjct: 823 LIRDAIIR---ELDRGGQIYFVYNRIEDIDQMEFKLKELVPELN---------IAIAHGR 870 Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584 M++ + E+VM F++G LL+ TT+IE G+D+ + + +II NA+ GL+QL+QL+GR+G Sbjct: 871 MNEKELENVMLDFQDGIYDLLLCTTIIETGLDIQNVNTMIIYNADKMGLSQLYQLKGRIG 930 Query: 585 RGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQS 639 R + S Y L++ S RL +K+ TE GF IA DL+ R G +LG Q Sbjct: 931 RSDRTSFAYFTYEGQKSLTEISEKRLMAIKDFTEFGSGFKIAMRDLELRGAGNLLGESQH 990 Query: 640 GMPKFLIAQ--PELHDSLLEIARKDAK 664 G IA+ +L+ LLE A ++AK Sbjct: 991 GH----IAKIGYDLYVKLLEQAVREAK 1013 >gi|291457129|ref|ZP_06596519.1| ATP-dependent DNA helicase [Bifidobacterium breve DSM 20213] gi|291380964|gb|EFE88482.1| ATP-dependent DNA helicase [Bifidobacterium breve DSM 20213] Length = 880 Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 134/336 (39%), Positives = 189/336 (56%), Gaps = 26/336 (7%) Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 +P+ + K + K AEAF IH+P F+ A E L Y+E Q +LL R Sbjct: 289 IPDILPKSIRAAKGLLHRAEAFLAIHDPDSTVRFK---EAIETLRYEEAFVSQASLLKAR 345 Query: 245 KQFKKEIGIPINVEG-------------KIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 + K P + G + + + ++PF T Q ++DI D+++ Sbjct: 346 QHAHKSSAHPCLLNGDNETGAASTMDVTNLRDRFIASLPFELTAGQHQVVEDIAADLARD 405 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351 M R+LQG+VGSGKT+VAL AM V AG QAV++AP +LA+QH+E I K + + Sbjct: 406 WPMQRLLQGEVGSGKTVVALAAMLQVVGAGYQAVLVAPTQVLAEQHFETIGKMVADLNVP 465 Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411 V ++TG M A RRKAL A G+ II+ THA F + Q L LV++DEQHRFGV+QR Sbjct: 466 VTLLTGGMKLAARRKALAAAASGEPGIIVATHAAFSKTFQAPHLALVVIDEQHRFGVEQR 525 Query: 412 LKL---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468 L T T PH+L+MTATPIPRT +T GD+DIS +TE P GRKPI+TV+ +N Sbjct: 526 ESLNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRTVV--VNEA 583 Query: 469 D-----EVIERLKVVLSEGKKAYWICPQIEEKKESN 499 D + ++ + G++AY ICP+I+ E + Sbjct: 584 DAGTMGRMFAHIRARVDAGERAYIICPRIDTDDEDD 619 Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 73/193 (37%), Positives = 104/193 (53%), Gaps = 2/193 (1%) Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 + +R L + A + GR D K VM F +G +L++TTVIEVG+DV AS Sbjct: 685 IADRLQKLPQFAGIRFATLTGRDKDDVKTQVMADFASGETPILVSTTVIEVGVDVKQASC 744 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622 I+I +A+ +GL+QLHQLRGRVGRG S L+ + RL V+ N+ DG IA+ Sbjct: 745 IVIFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHNSLDGVEIAQ 804 Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTSVRGQSI 681 DL+ R G++LG QSG L + D+ ++ AR A+ +L DP+L Q Sbjct: 805 ADLEFRGAGDVLGDAQSGGKSSLKLLRVVKDADMIADARTRAEQLLEADPELAG-EVQLA 863 Query: 682 RILLYLYQYNEAF 694 +L + NE F Sbjct: 864 GAVLDFTRGNETF 876 >gi|170733304|ref|YP_001765251.1| transcription-repair coupling factor [Burkholderia cenocepacia MC0-3] gi|169816546|gb|ACA91129.1| transcription-repair coupling factor [Burkholderia cenocepacia MC0-3] Length = 1156 Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 158/433 (36%), Positives = 230/433 (53%), Gaps = 27/433 (6%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q Sbjct: 596 KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQ 655 Query: 324 AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 +++P +LA+QH + F ++ IVE+ + A+ +I G I+IGT Sbjct: 656 VALLSPTTLLAEQHTQTFADRFADWPVRIVELSRFKTAK-EVNAAIAQINEGSVDIVIGT 714 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G Sbjct: 715 HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 774 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498 D S I P R IKT + R +E + R ++ L G + Y++ ++E E +++ Sbjct: 775 RDFSVIATAPQKRLAIKTFV---RREEESVIREAMLRELKRGGQVYFLHNEVETIENRKA 831 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 ++V + I I HG+M + + E VM F +L+ TT+IE GIDV Sbjct: 832 MLEALVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 882 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616 A+ II+ A+ FGLAQLHQLRGRVGR + LL H P L+K + RL ++ E+ Sbjct: 883 SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEE 942 Query: 617 ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 GF +A DL+ R GE+LG KQSG + Q L+ +L A K K+ ++PDL Sbjct: 943 LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDL 998 Query: 674 TSVRGQSIRILLY 686 T+ + I L+ Sbjct: 999 TAPLAATTEINLH 1011 >gi|209520701|ref|ZP_03269451.1| transcription-repair coupling factor [Burkholderia sp. H160] gi|209498863|gb|EDZ98968.1| transcription-repair coupling factor [Burkholderia sp. H160] Length = 1159 Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 163/474 (34%), Positives = 243/474 (51%), Gaps = 21/474 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W R+ A ++ L R+ ++ G +E K K + F T Q Sbjct: 554 QWEKAKRKAAQQIRDTAAELLNLYARRAARE--GHAFALEPKDYVKFAESFGFEETPDQA 611 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q +++P +LA+QH Sbjct: 612 AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHT 671 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + + ++ A+++I G I+IGTH L +Q+ +L LV Sbjct: 672 QTFSDRFSDWPVRIAELSRFKSTKEVNAAIQQINEGAVDIVIGTHKLLSSDVQFKRLGLV 731 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+HRFGV+Q+ L VL +TATPIPRTL + G D S I P R I Sbjct: 732 IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 791 Query: 459 KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517 KT + D VI E + L G + Y++ ++E + N R ++E + Sbjct: 792 KTFV--RREEDGVIREAMLRELKRGGQVYFLHNEVETIE--NRRQMLEALVP-----EAR 842 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 IA+ HG+M + + E VM F +L+ TT+IE GIDV A+ I+I ++ FGLAQLH Sbjct: 843 IAVAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTILIHRSDKFGLAQLH 902 Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632 QLRGRVGR + LL H P L+K + RL ++ E+ GF +A DL+ R GE Sbjct: 903 QLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGE 962 Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686 +LG KQSG + + Q L+ +L A K K+ ++PDLT+ + I L+ Sbjct: 963 VLGDKQSGEIQEIGFQ--LYTDMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1012 >gi|293380357|ref|ZP_06626428.1| transcription-repair coupling factor [Lactobacillus crispatus 214-1] gi|290923040|gb|EFD99971.1| transcription-repair coupling factor [Lactobacillus crispatus 214-1] Length = 1164 Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 142/429 (33%), Positives = 233/429 (54%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ + E +A + L +++ +K G + + + ++ P+ T Q Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKQFEDAFPYPETPDQL 620 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 ++K+I QDM M R+L GDVG GKT VAL A A++ Q + P ILAQQHY Sbjct: 621 RSVKEIKQDMESSKPMDRLLVGDVGFGKTEVALRAAFKAIQDNKQVAFLVPTTILAQQHY 680 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I+ ++ + +++ ++ +E + +G+ +++GTH + +++ L L+ Sbjct: 681 ETIQDRFKDFPVNTAMLSRFQTPVESKEIIEGLKNGKIDLVVGTHRILSQDVKFKNLGLL 740 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + KL Q VL +TATPIPRTL ++ +G D+S + P R PI Sbjct: 741 IVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800 Query: 459 KTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T + + +I V+ L+ + +G + +++ +I S+ VE+ L + Sbjct: 801 QTYV--MEQIPSVVRDACLREMQRDG-QVFYLHNRI-----SDIDETVEKLQELMPQ--A 850 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 IA HGRMS E ++ F N +L+ TT+IE GID+ + + +IIE+A+H+GL+QL Sbjct: 851 RIAAAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQL 910 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGR+GR ++ LY P L++ RL +++ TE GF IA DL R G Sbjct: 911 YQLRGRIGRSARLAYAYFLYKPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAG 970 Query: 632 EILGIKQSG 640 +LG +Q G Sbjct: 971 NMLGAQQHG 979 >gi|238026956|ref|YP_002911187.1| transcription-repair coupling factor [Burkholderia glumae BGR1] gi|237876150|gb|ACR28483.1| Transcription-repair coupling factor [Burkholderia glumae BGR1] Length = 1157 Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 146/387 (37%), Positives = 211/387 (54%), Gaps = 23/387 (5%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q Sbjct: 595 KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 654 Query: 324 AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 +++P +LA+QH + FI ++ + + V ++ A+ +I G I+IGT Sbjct: 655 VALLSPTTLLAEQHTQTFIDRFA-DWPVRVAELSRFKSTKEVNAAIRQINEGSVDIVIGT 713 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G Sbjct: 714 HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 773 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498 D S I P R IKT + R +E + R ++ L G + Y++ ++E E +++ Sbjct: 774 RDFSVIATAPQKRLAIKTFV---RREEESVIREAMLRELKRGGQVYFLHNEVETIENRKT 830 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 ++V + IAI HG+M + + E VM F +L+ TT+IE GIDV Sbjct: 831 MLEALVPE---------ARIAIAHGQMHERELERVMREFVAQRANVLLCTTIIETGIDVP 881 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616 A+ II+ A+ FGLAQLHQLRGRVGR + LL H P L+K + RL ++ E+ Sbjct: 882 SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEE 941 Query: 617 ---GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG KQSG Sbjct: 942 LGSGFYLAMHDLEIRGTGEVLGDKQSG 968 >gi|256844410|ref|ZP_05549896.1| transcription-repair coupling factor [Lactobacillus crispatus 125-2-CHN] gi|256613488|gb|EEU18691.1| transcription-repair coupling factor [Lactobacillus crispatus 125-2-CHN] Length = 1164 Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 142/429 (33%), Positives = 233/429 (54%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ + E +A + L +++ +K G + + + ++ P+ T Q Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKQFEDAFPYPETPDQL 620 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 ++K+I QDM M R+L GDVG GKT VAL A A++ Q + P ILAQQHY Sbjct: 621 RSVKEIKQDMESSKPMDRLLVGDVGFGKTEVALRAAFKAIQDNKQVAFLVPTTILAQQHY 680 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I+ ++ + +++ ++ +E + +G+ +++GTH + +++ L L+ Sbjct: 681 ETIQDRFKDFPVNTTMLSRFQTPVESKEIIEGLKNGKIDLVVGTHRILSQDVKFKNLGLL 740 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + KL Q VL +TATPIPRTL ++ +G D+S + P R PI Sbjct: 741 IVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800 Query: 459 KTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T + + +I V+ L+ + +G + +++ +I S+ VE+ L + Sbjct: 801 QTYV--MEQIPSVVRDACLREMQRDG-QVFYLHNRI-----SDIDETVEKLQELMPQ--A 850 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 IA HGRMS E ++ F N +L+ TT+IE GID+ + + +IIE+A+H+GL+QL Sbjct: 851 RIAAAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQL 910 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGR+GR ++ LY P L++ RL +++ TE GF IA DL R G Sbjct: 911 YQLRGRIGRSARLAYAYFLYKPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAG 970 Query: 632 EILGIKQSG 640 +LG +Q G Sbjct: 971 NMLGAQQHG 979 >gi|225619936|ref|YP_002721193.1| transcription-repair coupling factor [Brachyspira hyodysenteriae WA1] gi|225214755|gb|ACN83489.1| transcription-repair coupling factor [Brachyspira hyodysenteriae WA1] Length = 1247 Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 139/401 (34%), Positives = 213/401 (53%), Gaps = 19/401 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T Q AI DI +DM M R++ GDVG GKT VA A+ A+ AG Q I+ P Sbjct: 641 YEETVDQLRAINDIKEDMESGKMMDRLVCGDVGFGKTEVAFRAVFKAIMAGKQCAILCPT 700 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 IL+QQHY KK ++ I +E++ + ++ E + G +I+GTH L I Sbjct: 701 TILSQQHYNNAKKRFEDFPIKIEVLNRFVTSKQAKRNKELLKEGSCDLIVGTHMLLSKDI 760 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L L+++DE+ RFGV+ + L + VL ++ATPIPRTL + G DIS I Sbjct: 761 EFKNLGLIVIDEEQRFGVKHKEALKKLRLETDVLTLSATPIPRTLNMALTGIRDISIIET 820 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P R P+KT + + D V+ ++ L + +++ +I+ +E F + Sbjct: 821 PPLNRIPVKTFVTEFSE-DAVVNAIERELKREGQVFYLYNRID---------TIESFALM 870 Query: 511 HEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 + + I + HGRM+ E +M F N +L++TT+IE GID+ +A+ I+I+NA Sbjct: 871 IKKLCPKARICVAHGRMTGHQLEKIMGDFINHKYDILVSTTIIENGIDIPNANTILIDNA 930 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623 GL++L+QLRGRVGR + + + Y L++ +Y RL + D GF IA Sbjct: 931 NKLGLSELYQLRGRVGRSDREAYAYMFYPSDLALTEVAYKRLEAISEHTDLGAGFKIAMR 990 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 DL+ R G ILG +QSGM EL+ +LE A + K Sbjct: 991 DLEIRGAGNILGKEQSGM--IYQVGYELYTQMLEEAANEYK 1029 >gi|227544685|ref|ZP_03974734.1| transcription-repair coupling factor [Lactobacillus reuteri CF48-3A] gi|300909073|ref|ZP_07126536.1| transcription-repair coupling factor [Lactobacillus reuteri SD2112] gi|227185331|gb|EEI65402.1| transcription-repair coupling factor [Lactobacillus reuteri CF48-3A] gi|300894480|gb|EFK87838.1| transcription-repair coupling factor [Lactobacillus reuteri SD2112] Length = 1179 Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 138/430 (32%), Positives = 233/430 (54%), Gaps = 21/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R + E +A ++ L +++ +K P + + ++ N P++ T+ Q Sbjct: 572 EWAKTKRRVSSKIEDIADELVDLYAKREAEKGYAFP--KDDYLQKQFDANFPYNETRDQL 629 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I +I +DM + M R+L GDVG GKT VA+ A+ AV G Q + P ILAQQHY Sbjct: 630 RSIDEIKEDMEKPKPMDRLLVGDVGYGKTEVAMRAIFKAVTGGKQVAFLVPTTILAQQHY 689 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + I + +++ ++ + G +++GTH + +++ L L+ Sbjct: 690 NTLMRRFEGFPINIALMSRFKTPKELKETEAGLKDGSVDVVVGTHRILSKDVEFKDLGLL 749 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + KL Q VL +TATPIPRTL ++ LG D+S + PAGR PI Sbjct: 750 IVDEEQRFGVKHKEKLKQLKNNVDVLTLTATPIPRTLHMSMLGVRDLSVLETPPAGRYPI 809 Query: 459 KTVIIPINRI---DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 +T ++ N D +I ++ G + Y++ ++ + +E+ V L Sbjct: 810 QTYVMEQNSSAIRDGIIREMQ----RGGQVYYLHNRVHDIEET-----VAWLQELVPE-- 858 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + I I+G+MS+ + E+V+ F G +L+ T++IE G+D+ +A+ + +ENA+ GLAQ Sbjct: 859 ARIGYINGQMSENELETVLYEFIQGNYDILVTTSIIETGVDIPNANTLFVENADRMGLAQ 918 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+Q+RGR+GR ++ +Y P L++ RL+ +++ TE GF IA DL R Sbjct: 919 LYQIRGRIGRSNRVAYAYFMYQPNKVLTELGEKRLAAIRDFTELGSGFKIAMRDLAIRGA 978 Query: 631 GEILGIKQSG 640 G +LG +Q G Sbjct: 979 GNLLGKQQHG 988 >gi|329120140|ref|ZP_08248810.1| transcription-repair coupling factor [Neisseria bacilliformis ATCC BAA-1200] gi|327463671|gb|EGF09989.1| transcription-repair coupling factor [Neisseria bacilliformis ATCC BAA-1200] Length = 1290 Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 146/419 (34%), Positives = 227/419 (54%), Gaps = 15/419 (3%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T+ Q +AI +++D++Q M R++ GDVG GKT VAL A AV G Q ++AP Sbjct: 745 YEETEDQAAAIAAVIKDLTQARPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPT 804 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +L +QH + + + V ++ R L +A G I+IGTH L QD I Sbjct: 805 TLLVEQHAQNFADRFADFPVKVAQLSRFNSSKETRATLTGMADGTVDIVIGTHKLVQDDI 864 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + L LVI+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D S IT Sbjct: 865 SFKNLGLVIIDEEHRFGVRQKEQLKKLRANVDILTLTATPIPRTLSMALEGLRDFSLITT 924 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P+ R +KT + P + V E + L G + +++ +++ ++ ER +L Sbjct: 925 APSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIENMRERLETL 978 Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ III A+ Sbjct: 979 LPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADK 1036 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627 FG+AQLHQLRGRVGR + LL +SK++ RL + ++ GF +A +DL+ Sbjct: 1037 FGIAQLHQLRGRVGRSHHQAYAYLLTPEYISKDAEKRLDAIAAADELGAGFSLAMQDLEI 1096 Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686 R GEILG QSG + + L+ +L+ A +D K + PDL + G + I L+ Sbjct: 1097 RGAGEILGEGQSG--EMVQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLGVTTEIKLH 1151 >gi|224824692|ref|ZP_03697799.1| transcription-repair coupling factor [Lutiella nitroferrum 2002] gi|224603185|gb|EEG09361.1| transcription-repair coupling factor [Lutiella nitroferrum 2002] Length = 1129 Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 150/422 (35%), Positives = 228/422 (54%), Gaps = 21/422 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q SAI+ ++ DM M R++ GDVG GKT VAL A AV G Q ++ P Sbjct: 588 FEETPDQASAIEAVIADMCSGKPMDRLVCGDVGFGKTEVALRAAFVAVLGGKQVAVLVPT 647 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA+QH++ + + + ++ + AL +A G I+IGTH L Q + Sbjct: 648 TLLAEQHFQNFSDRFADWPVKIAELSRFRSAKESKAALAGLAEGTVDIVIGTHKLVQPDV 707 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 Q+ L LVI+DE+HRFGV+Q+ +L + VL +TATPIPRTL + G D S IT Sbjct: 708 QFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDVLTLTATPIPRTLSMALEGLRDFSAITT 767 Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P+ R +KT I P+ I E + R L G + +++ +++ +++ E+ Sbjct: 768 APSRRLAVKTFISPLANGVIREAVLR---ELKRGGQVFFLHNEVD-----TIQNMQEKLA 819 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 L + I + HG++ + + E VM F LL+ +T+IE GID+ +A+ I+I A Sbjct: 820 ELLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNLLLCSTIIETGIDIPNANTILINRA 877 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDL 625 + FGLAQLHQLRGRVGR + LL +++++ RL ++ +E+ GF +A DL Sbjct: 878 DKFGLAQLHQLRGRVGRSHHQAYAYLLTPDGMTRDAQKRLEAIQLSEELGAGFYLAMHDL 937 Query: 626 KQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684 + R GE+LG QSG M + A L +L+ A +D K T PDL + G + I Sbjct: 938 EIRGAGEVLGEGQSGEMQEVGFA---LFTEMLKQAVRDLKKGKT--PDLDAPLGVTTEIN 992 Query: 685 LY 686 L+ Sbjct: 993 LH 994 >gi|326795840|ref|YP_004313660.1| transcription-repair coupling factor [Marinomonas mediterranea MMB-1] gi|326546604|gb|ADZ91824.1| transcription-repair coupling factor [Marinomonas mediterranea MMB-1] Length = 1136 Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 138/380 (36%), Positives = 210/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + PF T Q+ AI +++DMS M R++ GDVG GKT VA+ A AV++G Q ++ Sbjct: 589 SFPFEETPDQQMAIDAVIKDMSTGKPMDRLVCGDVGFGKTEVAMRAAFLAVQSGKQVAVL 648 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHYE + + +E+++ ++A+ R+ G++ I++GTH L Q Sbjct: 649 VPTTLLAQQHYENFCDRFADWPVQIELLSRFRSGKQTKEAISRLEEGKSDIVVGTHKLIQ 708 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQ+ L LVI+DE+HRFGV+Q+ + VL +TATPIPRTL ++ G D+S Sbjct: 709 GDIQFSNLGLVIIDEEHRFGVKQKDQFKALRAEIDVLTLTATPIPRTLNMSLSGIRDLSI 768 Query: 448 ITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I PA R +KT + + +I E I R L G + Y++ ++E + E Sbjct: 769 IATPPAKRLSVKTFVKKKDDHQIKEAILR---ELHRGGQVYYLHNEVE-----TIQKAAE 820 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 L + + + HG+M + + E VM F + +L+ +T+IE GID+ +A+ III Sbjct: 821 FITELVPE--ARVIVGHGQMRERELEQVMSDFYHKRSNVLVCSTIIETGIDIPNANTIII 878 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLI 620 A+ FGLAQLHQLRGRVGR + LL ++ ++ RL + + GF + Sbjct: 879 NRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPQDRKVTGDAEKRLEAITMADTLGAGFTL 938 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 939 ATHDLEIRGTGELLGEGQSG 958 >gi|227878367|ref|ZP_03996322.1| transcriptional repair coupling factor [Lactobacillus crispatus JV-V01] gi|256849202|ref|ZP_05554635.1| transcriptional repair coupling factor [Lactobacillus crispatus MV-1A-US] gi|227862046|gb|EEJ69610.1| transcriptional repair coupling factor [Lactobacillus crispatus JV-V01] gi|256713978|gb|EEU28966.1| transcriptional repair coupling factor [Lactobacillus crispatus MV-1A-US] Length = 1164 Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 142/429 (33%), Positives = 233/429 (54%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ + E +A + L +++ +K G + + + ++ P+ T Q Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKQFEDAFPYPETPDQL 620 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 ++K+I QDM M R+L GDVG GKT VAL A A++ Q + P ILAQQHY Sbjct: 621 RSVKEIKQDMESSKPMDRLLVGDVGFGKTEVALRAAFKAIQDNKQVAFLVPTTILAQQHY 680 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I+ ++ + +++ ++ +E + +G+ +++GTH + +++ L L+ Sbjct: 681 ETIQDRFKDFPVNTTMLSRFQTPVESKEIIEGLKNGKIDLVVGTHRILSQDVKFKNLGLL 740 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + KL Q VL +TATPIPRTL ++ +G D+S + P R PI Sbjct: 741 IVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800 Query: 459 KTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T + + +I V+ L+ + +G + +++ +I S+ VE+ L + Sbjct: 801 QTYV--MEQIPSVVRDACLREMQRDG-QVFYLHNRI-----SDIDETVEKLQELMPQ--A 850 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 IA HGRMS E ++ F N +L+ TT+IE GID+ + + +IIE+A+H+GL+QL Sbjct: 851 RIAAAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQL 910 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGR+GR ++ LY P L++ RL +++ TE GF IA DL R G Sbjct: 911 YQLRGRIGRSARLAYAYFLYKPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAG 970 Query: 632 EILGIKQSG 640 +LG +Q G Sbjct: 971 NMLGAQQHG 979 >gi|298207099|ref|YP_003715278.1| transcription-repair coupling factor [Croceibacter atlanticus HTCC2559] gi|83849733|gb|EAP87601.1| transcription-repair coupling factor [Croceibacter atlanticus HTCC2559] Length = 1126 Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 131/376 (34%), Positives = 211/376 (56%), Gaps = 13/376 (3%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T Q SA +D+ +DM + M R++ GDVG GKT +A+ A AV+ G Q ++ P Sbjct: 556 YEDTPDQSSATEDVKKDMENERPMDRLVCGDVGFGKTEIAIRAAFKAVDNGKQVAVLVPT 615 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 ILA QH++ + ++ + VE + RR+ + + G+ IIIGTH L ++ Sbjct: 616 TILAFQHHKTFSERLKDFPVTVEYLNRFRSAKERRETIADLEAGKVDIIIGTHQLVNKTV 675 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L L+IVDE+ +FGV + KL L +TATPIPRTL + + D+S IT Sbjct: 676 KFKDLGLLIVDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTLQFSLMAARDLSTITT 735 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P R P++T +I + + + + ++ + G + Y++ +IE KE +++R Sbjct: 736 PPPNRYPVETNVIRFSE-ESIRDAVQYEIQRGGQVYFVHNRIENIKE--VAGMIQRVVP- 791 Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 + I I HG+M E +M SF NG +L++TT+IE G+DV +A+ I I NA + Sbjct: 792 ----DAKIGIGHGQMEGKKLEQLMLSFMNGDFDVLVSTTIIESGLDVPNANTIFINNANN 847 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625 FGL+ LHQ+RGRVGR + + C + P ++ ++ R++ L+ D GF IA +DL Sbjct: 848 FGLSDLHQMRGRVGRSNKKAFCYFITPPYSAMTDDARKRITALEQFSDLGSGFNIAMKDL 907 Query: 626 KQRKEGEILGIKQSGM 641 + R G++LG +QSG Sbjct: 908 EIRGAGDLLGGEQSGF 923 >gi|107028877|ref|YP_625972.1| transcription-repair coupling factor [Burkholderia cenocepacia AU 1054] gi|116689965|ref|YP_835588.1| transcription-repair coupling factor [Burkholderia cenocepacia HI2424] gi|105898041|gb|ABF80999.1| transcription-repair coupling factor [Burkholderia cenocepacia AU 1054] gi|116648054|gb|ABK08695.1| transcription-repair coupling factor [Burkholderia cenocepacia HI2424] Length = 1156 Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 158/433 (36%), Positives = 230/433 (53%), Gaps = 27/433 (6%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q Sbjct: 596 KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQ 655 Query: 324 AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 +++P +LA+QH + F ++ IVE+ + A+ +I G I+IGT Sbjct: 656 VALLSPTTLLAEQHTQTFADRFADWPVRIVELSRFKTAK-EVSAAIAQINEGSVDIVIGT 714 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G Sbjct: 715 HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 774 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498 D S I P R IKT + R +E + R ++ L G + Y++ ++E E +++ Sbjct: 775 RDFSVIATAPQKRLAIKTFV---RREEESVIREAMLRELKRGGQVYFLHNEVETIENRKA 831 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 ++V + I I HG+M + + E VM F +L+ TT+IE GIDV Sbjct: 832 MLEALVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 882 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616 A+ II+ A+ FGLAQLHQLRGRVGR + LL H P L+K + RL ++ E+ Sbjct: 883 SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEE 942 Query: 617 ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 GF +A DL+ R GE+LG KQSG + Q L+ +L A K K+ ++PDL Sbjct: 943 LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDL 998 Query: 674 TSVRGQSIRILLY 686 T+ + I L+ Sbjct: 999 TAPLAATTEINLH 1011 >gi|325286644|ref|YP_004262434.1| transcription-repair coupling factor [Cellulophaga lytica DSM 7489] gi|324322098|gb|ADY29563.1| transcription-repair coupling factor [Cellulophaga lytica DSM 7489] Length = 1113 Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 135/376 (35%), Positives = 209/376 (55%), Gaps = 13/376 (3%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T Q A +D+ +DM M R++ GDVG GKT VA+ A AV+ G Q ++ P Sbjct: 552 YEDTPDQSKATEDLKKDMESDRPMDRLICGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPT 611 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 ILA QH++ + ++ + V+ + +R+ LER+A G+ IIIGTH L ++ Sbjct: 612 TILAFQHHKTFAERLKDMPVTVDYVNRFRTAKEKRETLERLAEGKVDIIIGTHQLVNKNV 671 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + L L+IVDE+ +FGV + KL VL +TATPIPRTL + + D+S I Sbjct: 672 VFKDLGLLIVDEEQKFGVAVKDKLKSIKENVDVLTLTATPIPRTLQFSLMAARDLSTINT 731 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P R PI + ++ D + + + + G + ++I +IE KE +++R Sbjct: 732 APPNRYPIDSHVVRFTE-DTIRDAVSYEIQRGGQVFFIHNRIENIKE--VAGMLQRLVP- 787 Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 + I I HG+M E++M +F NG +L++TT+IE G+DV +A+ I I NA + Sbjct: 788 ----DAKIGIGHGQMDGKKLETLMLAFMNGEFDVLVSTTIIESGLDVPNANTIFINNANN 843 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEEDL 625 FGL+ LHQ+RGRVGR + + C + P +S ++ R+ L+ TE GF IA +DL Sbjct: 844 FGLSDLHQMRGRVGRSNKKAFCYFITPPYDSMSNDARKRIQALEQFTELGSGFNIAMKDL 903 Query: 626 KQRKEGEILGIKQSGM 641 + R G+ILG +QSG Sbjct: 904 EIRGAGDILGGEQSGF 919 >gi|307609748|emb|CBW99260.1| transcription-repair coupling factor [Legionella pneumophila 130b] Length = 1153 Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 144/384 (37%), Positives = 202/384 (52%), Gaps = 17/384 (4%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K PF+ T Q AI+ I++DM M R++ GDVG GKT VA+ A AV+ G Q Sbjct: 595 KFASGFPFTETPDQLQAIEQIIKDMQSPRPMDRLICGDVGFGKTEVAMRAAFVAVQNGKQ 654 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 I+AP +LA QH+E + + +E+++ L + G+ I+IGTH Sbjct: 655 VCILAPTTLLAGQHFESFRDRFAEFPVNIELLSRFRSNKESEAVLAALQSGKVDIVIGTH 714 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443 LFQ++I + L L+I+DE+HRFGV+Q+ + T +L MTATPIPRTL + G Sbjct: 715 KLFQNNISFKNLGLLIIDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLNMAMAGIR 774 Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503 DIS I PA R IKT N + L+ +L G+ Y N Sbjct: 775 DISLIATPPAKRLAIKTFWQEKNDLTIREAILREILRGGQVFYL----------HNNVQT 824 Query: 504 VERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 +ER E + I HG+M + E +M F + +L+ TT+IE GID+ A+ Sbjct: 825 IERVCQDLEALVPEAKIQSAHGQMRERQLERIMSDFYHHRFNVLVCTTIIETGIDIPTAN 884 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED--- 616 III+ A+ FGLAQLHQLRGRVGR + LL L+ ++ RL + + ED Sbjct: 885 TIIIDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPNEKLLTPDAVKRLEAIVSLEDLGA 944 Query: 617 GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 945 GFTLATHDLEIRGAGELLGEEQSG 968 >gi|222528653|ref|YP_002572535.1| transcription-repair coupling factor [Caldicellulosiruptor bescii DSM 6725] gi|222455500|gb|ACM59762.1| transcription-repair coupling factor [Caldicellulosiruptor bescii DSM 6725] Length = 1141 Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 139/429 (32%), Positives = 233/429 (54%), Gaps = 18/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW ++ E++A + L ++Q K G + + ++ P++ T+ Q Sbjct: 554 EWQKQKQKVRKSLEIVAKDLVELYAKRQLGK--GFKFSKDTLWQKEFEEKFPYTETEGQL 611 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 AI++I +DM + M RIL GDVG GKT VA+ A AV Q ++ P ILAQQHY Sbjct: 612 QAIEEIKRDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVLVPTTILAQQHY 671 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 ++ + +E+++ + ++K + + G I+IGTH L +++ L L+ Sbjct: 672 MTFSARMKDFPVTIEVLSRLKSETQQKKIVRGLREGTIDIVIGTHRLLSSDVKFKDLGLL 731 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+H+FGV+ + K+ + T VL +TATPIPRTL + LG D+S I + P R P+ Sbjct: 732 IIDEEHKFGVEAKEKIKKLKTNVDVLTLTATPIPRTLNMALLGIRDLSVIEDPPEDRFPV 791 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T ++ N I E I R +S G + +++ +I++ +E V + +L + + Sbjct: 792 QTFVLEYNERIIKEAILR---EISRGGQVFYLYNRIKDIQE-----VAAKLQNLVDD-SI 842 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 +A HG+M + + E V+ F G +L+ TT+IE G+D+ + + +I+E+++ GLAQL Sbjct: 843 KVACAHGQMPEEELERVLLDFIEGRYNVLVCTTIIESGVDMPNVNTLIVEDSDRLGLAQL 902 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 +QLRGRVGR ++ + LS+ + RL+ +K + GF IA DL+ R G Sbjct: 903 YQLRGRVGRSSRLAYAYFTFRKDKVLSEQAQKRLAAIKEFTELGAGFKIAMRDLEIRGAG 962 Query: 632 EILGIKQSG 640 +LG Q G Sbjct: 963 SLLGKLQHG 971 >gi|303234885|ref|ZP_07321510.1| transcription-repair coupling factor [Finegoldia magna BVS033A4] gi|302494003|gb|EFL53784.1| transcription-repair coupling factor [Finegoldia magna BVS033A4] Length = 1168 Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 152/445 (34%), Positives = 242/445 (54%), Gaps = 30/445 (6%) Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290 DE+ + L R + K G + + + ++ + P+ T SQ +I++I DM Sbjct: 588 DEMADDLVELYSKRAKLK---GYQFSQDTEWQREFEDSFPYEETDSQVRSIEEIKADMES 644 Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350 M R+L GDVG GKT VA+ A A+ G Q + P ILAQQH+ IK+ ++ I Sbjct: 645 DRPMDRLLCGDVGYGKTEVAIRACFKAIMDGKQVAFLVPTTILAQQHFNTIKERFRDYPI 704 Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410 VE+++ + A +++ ++ + G +++GTH + ++++ L L+++DE+ RFGV+ Sbjct: 705 RVEMMSRFVSPARQKQIMKDVQRGLVDLLVGTHRILSKNLKFKDLGLLVIDEEQRFGVRH 764 Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RI 468 + KL VL ++ATPIPRTL + G D+S + E P R PI T + N I Sbjct: 765 KEKLKSMRENVDVLTLSATPIPRTLQMGLTGIRDMSLLEEPPEDRTPISTYVTEYNPSLI 824 Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNF--RSVVERFNSLHEHFTSSIAIIHGRMS 526 + I R L G + Y++ +IE+ + F + +V N IAI HGRM+ Sbjct: 825 RDAIIR---ELDRGGQIYFVYNRIEDIDQMEFKLKELVPELN---------IAIAHGRMN 872 Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586 + + E+VM F++G LL+ TT+IE G+D+ + + +II NA+ GL+QL+QL+GR+GR Sbjct: 873 EKELENVMLDFQDGIYDLLLCTTIIETGLDIQNVNTMIIYNADKMGLSQLYQLKGRIGRS 932 Query: 587 EEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGM 641 + S Y L++ S RL +K+ TE GF IA DL+ R G +LG Q G Sbjct: 933 DRTSFAYFTYEGQKSLTEISEKRLMAIKDFTEFGSGFKIAMRDLELRGAGNLLGESQHGH 992 Query: 642 PKFLIAQ--PELHDSLLEIARKDAK 664 IA+ +L+ LLE A ++AK Sbjct: 993 ----IAKIGYDLYVKLLEQAVREAK 1013 >gi|167586917|ref|ZP_02379305.1| transcription-repair coupling factor [Burkholderia ubonensis Bu] Length = 1158 Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 158/433 (36%), Positives = 230/433 (53%), Gaps = 27/433 (6%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q Sbjct: 596 KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQ 655 Query: 324 AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 +++P +LA+QH + F ++ IVE+ + A+ +I G I+IGT Sbjct: 656 VALLSPTTLLAEQHTQTFADRFADWPVRIVELSRFKTAK-EVNAAIAQINEGSVDIVIGT 714 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G Sbjct: 715 HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 774 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498 D S I P R IKT + R +E + R ++ L G + Y++ ++E E +++ Sbjct: 775 RDFSVIATAPQKRLAIKTFV---RREEESVIREAMLRELKRGGQVYFLHNEVETIENRKA 831 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + IAI HG+M + + E VM F +L+ TT+IE GIDV Sbjct: 832 MLEELVPE---------ARIAIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 882 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616 A+ II+ ++ FGLAQLHQLRGRVGR + LL H P L+K + RL ++ E+ Sbjct: 883 SANTIIMHRSDKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEE 942 Query: 617 ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 GF +A DL+ R GE+LG KQSG + Q L+ +L A K K+ ++PDL Sbjct: 943 LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDL 998 Query: 674 TSVRGQSIRILLY 686 T+ + I L+ Sbjct: 999 TAPLAATTEINLH 1011 >gi|169824178|ref|YP_001691789.1| transcription-repair coupling factor [Finegoldia magna ATCC 29328] gi|167830983|dbj|BAG07899.1| transcription-repair coupling factor [Finegoldia magna ATCC 29328] Length = 1168 Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 152/447 (34%), Positives = 243/447 (54%), Gaps = 30/447 (6%) Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288 + DE+ + L R + K G + + + ++ + P+ T SQ +I++I DM Sbjct: 586 SVDEMADDLVELYSKRAKLK---GYQFSQDTEWQREFEDSFPYEETDSQVRSIEEIKADM 642 Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348 M R+L GDVG GKT VA+ A A+ G Q + P ILAQQH+ IK+ ++ Sbjct: 643 ESDRPMDRLLCGDVGYGKTEVAIRACFKAIMDGKQVAFLVPTTILAQQHFNTIKERFRDY 702 Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408 I VE+++ + A +++ ++ + G +++GTH + ++++ L L+++DE+ RFGV Sbjct: 703 PIRVEMMSRFVSPARQKQIMKDVQRGLVDLLVGTHRILSKNLKFKDLGLLVIDEEQRFGV 762 Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-- 466 + + KL VL ++ATPIPRTL + G D+S + E P R PI T + N Sbjct: 763 RHKEKLKSMRENVDVLTLSATPIPRTLQMGLTGIRDMSLLEEPPEDRTPISTYVTEYNPS 822 Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF--RSVVERFNSLHEHFTSSIAIIHGR 524 I + I R L G + Y++ +IE+ + F + +V N IAI HGR Sbjct: 823 LIRDAIIR---ELDRGGQIYFVYNRIEDIDQMEFKLKELVPELN---------IAIAHGR 870 Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584 M++ + E+VM F++G LL+ TT+IE G+D+ + + +II NA+ GL+QL+QL+GR+G Sbjct: 871 MNEKELENVMLDFQDGIYDLLLCTTIIETGLDIQNVNTMIIYNADKMGLSQLYQLKGRIG 930 Query: 585 RGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQS 639 R + S Y L++ S RL +K+ TE GF IA DL+ R G +LG Q Sbjct: 931 RSDRTSFAYFTYEGQKSLTEISEKRLMAIKDFTEFGSGFKIAMRDLELRGAGNLLGESQH 990 Query: 640 GMPKFLIAQ--PELHDSLLEIARKDAK 664 G IA+ +L+ LLE A ++AK Sbjct: 991 GH----IAKIGYDLYVKLLEQAVREAK 1013 >gi|227903169|ref|ZP_04020974.1| transcriptional repair coupling factor [Lactobacillus acidophilus ATCC 4796] gi|227868974|gb|EEJ76395.1| transcriptional repair coupling factor [Lactobacillus acidophilus ATCC 4796] Length = 1165 Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 143/431 (33%), Positives = 235/431 (54%), Gaps = 21/431 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ + E +A + L +++ +K G + + + +K P+ T Q Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQRKFDDAFPYPETADQL 620 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +IK+I +DM + M R++ GDVG GKT VAL A AV+ Q + P ILAQQHY Sbjct: 621 RSIKEIKEDMEKPKPMDRLVVGDVGFGKTEVALRAAFKAVQDNKQVAFLVPTTILAQQHY 680 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I+ ++ + + +++ A ++ +E + G+ +++GTH + +++ L L+ Sbjct: 681 ETIQDRFKDFPVNIAMLSRFQTPAESKEIIEGLKDGKIDLVVGTHRILSKDVEFKNLGLL 740 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + +L Q VL +TATPIPRTL ++ +G D+S + P R PI Sbjct: 741 IVDEEQRFGVKHKERLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 +T + + +I V++ L E ++ +++ +I S+ VE+ L + Sbjct: 801 QTYV--MEQIPSVVK--DACLREMQRYGQVFYLHNRI-----SDIDETVEKLQQLIPN-- 849 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + IA HGRMS E ++ F N +L+ TT+IE GID+ + + +IIE+A+H+GL+Q Sbjct: 850 ARIASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQ 909 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGR+GR ++ LY P L++ RL +++ TE GF IA DL R Sbjct: 910 LYQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGA 969 Query: 631 GEILGIKQSGM 641 G +LG +Q G Sbjct: 970 GNMLGAQQHGF 980 >gi|289166915|ref|YP_003445182.1| transcription-repair coupling factor [Streptococcus mitis B6] gi|288906480|emb|CBJ21310.1| transcription-repair coupling factor [Streptococcus mitis B6] Length = 1169 Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 144/404 (35%), Positives = 229/404 (56%), Gaps = 23/404 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +I++I +DM M R+L GDVG GKT VA+ A AV Q V++ P Sbjct: 610 PYVETDDQLRSIEEIKRDMQSSQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLVP 669 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY K+ QN + +++++ + + + LE++ +GQ I+IGTH + Sbjct: 670 TTVLAQQHYTNFKERFQNFAVNIDVLSRFKSKKEQTETLEKLKNGQVDILIGTHRVLSKD 729 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 730 VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R P++T ++ N E + R V+ + G + Y++ +++ ++ ++ Sbjct: 790 TPPTNRYPVQTYVLEKN---ESVIRDAVLREMERGGQVYYLYNKVD--------TIDQKV 838 Query: 508 NSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 + L E +S+ +HGRMS+I E+ + F G +L+ TT+IE G+D+ +A+ + +E Sbjct: 839 SELQELIPEASVGYVHGRMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFVE 898 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIA 621 NA++ GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF IA Sbjct: 899 NADYMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIA 958 Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 DL R G +LG QSG + EL+ LLE IA+++ Sbjct: 959 MRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000 >gi|223940292|ref|ZP_03632150.1| transcription-repair coupling factor [bacterium Ellin514] gi|223891059|gb|EEF57562.1| transcription-repair coupling factor [bacterium Ellin514] Length = 1212 Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 138/377 (36%), Positives = 208/377 (55%), Gaps = 17/377 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T+ Q AI + DM + M R++ GDVG GKT VA+ A AV G Q I+ P Sbjct: 635 YEETRDQMRAINETKGDMERPKPMDRLICGDVGFGKTEVAIRAAFKAVMEGKQVAILVPT 694 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LAQQHY K+ + + VE+++ +R++ + + G I+IGTH L Q I Sbjct: 695 TVLAQQHYNTFKERVADYPMRVELLSRFRSPKNRKRVISELPAGAVDIVIGTHRLIQSDI 754 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + L LVI+DE+ RFGV + K Q VL ++ATPIPRTL L G D+S I Sbjct: 755 NFKDLGLVIIDEEQRFGVLHKEKFKQIRKLVDVLTLSATPIPRTLYLALTGARDMSTIET 814 Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R P++T++ + I E I+R L+ G + Y++ ++ ++ ++ Sbjct: 815 PPQDRLPVETIVAQYDERLIREAIQR---ELNRGGQVYFLHNRV-----GTIDAMAQKLR 866 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 +L H + I + HG+M D E VM +F NG +L++TT+IE G+D+ +A+ +II+ A Sbjct: 867 TLVPH--ARIVVGHGQMKPDDLEEVMTAFINGEADVLLSTTIIESGLDIPNANTMIIDRA 924 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEE 623 + FGL+ L+QLRGRVGR + + LL H L ++ R+S LK GF IA Sbjct: 925 DRFGLSDLYQLRGRVGRYKHQAYAYLLLPRHAGLLADARKRISALKQYSTLGSGFKIAMR 984 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R G +LG +QSG Sbjct: 985 DLEIRGAGNMLGPEQSG 1001 >gi|295676504|ref|YP_003605028.1| transcription-repair coupling factor [Burkholderia sp. CCGE1002] gi|295436347|gb|ADG15517.1| transcription-repair coupling factor [Burkholderia sp. CCGE1002] Length = 1159 Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 163/474 (34%), Positives = 242/474 (51%), Gaps = 21/474 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W R+ A ++ L R+ ++ G +E K K + F T Q Sbjct: 554 QWEKAKRKAAQQIRDTAAELLNLYARRAARE--GHAFALEPKDYVKFAESFGFEETPDQA 611 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q +++P +LA+QH Sbjct: 612 AAIAAVIGDMTGGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHT 671 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + + ++ A+++I G I+IGTH L +Q+ +L LV Sbjct: 672 QTFSDRFSDWPVRIAELSRFKSTKEVNAAIQQINEGSVDIVIGTHKLLSSDVQFKRLGLV 731 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+HRFGV+Q+ L VL +TATPIPRTL + G D S I P R I Sbjct: 732 IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 791 Query: 459 KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517 KT + D VI E + L G + Y++ ++E + N R ++E + Sbjct: 792 KTFV--RREEDSVIREAMLRELKRGGQVYFLHNEVETIE--NRRQMLEALVP-----EAR 842 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 IA+ HG+M + + E VM F +L+ TT+IE GIDV A+ I+I ++ FGLAQLH Sbjct: 843 IAVAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTILIHRSDKFGLAQLH 902 Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632 QLRGRVGR + LL H P L+K + RL ++ E+ GF +A DL+ R GE Sbjct: 903 QLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGE 962 Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686 +LG KQSG + Q L+ +L A K K+ ++PDLT+ + I L+ Sbjct: 963 VLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1012 >gi|159899175|ref|YP_001545422.1| transcription-repair coupling factor [Herpetosiphon aurantiacus ATCC 23779] gi|159892214|gb|ABX05294.1| transcription-repair coupling factor [Herpetosiphon aurantiacus ATCC 23779] Length = 1207 Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 142/429 (33%), Positives = 231/429 (53%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W R+ A E LA ++ L +Q + G + + +++ + P++ T Q Sbjct: 578 DWERAKRKVRADVEELATELLDLYAARQLVE--GFAYSSDTSWQRELEDSFPYTETDDQL 635 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 AI+++ DM M R++ GDVG GKT VAL A AV+ G Q ++ P +LAQQH+ Sbjct: 636 RAIEEVKSDMENTRPMDRLICGDVGFGKTEVALRAAFKAVQDGRQVAVLVPTTVLAQQHF 695 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + Q + +E+++ + ++ ERI G+ I++GTH + I + +L LV Sbjct: 696 ETFSRRMQMFPVRIEMLSRFRSASQQKSITERIVKGEIDIVVGTHRILSSDIHFKQLGLV 755 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L + VL +TATPIPRT+ + G D+S I P R PI Sbjct: 756 IIDEEQRFGVKDKERLKKLRHEIDVLTLTATPIPRTMHMALSGIRDLSVIDTPPDDRMPI 815 Query: 459 KTVIIPINRIDEVIERLKVVLSEGK--KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 KT + P N E++ R ++ G+ +AY++ +++ + +V R L + Sbjct: 816 KTYVQPYN---EMLVRDAILRELGRNGQAYFVHNRVQ-----SIYTVANRLQKLVPE--A 865 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 I + HG+M + E V+ F G + + TT+IE GIDV A+ +II++A +GLAQL Sbjct: 866 RIGVGHGQMPEKALEKVILQFFEGLFDVFVCTTIIESGIDVPSANTMIIDDATTYGLAQL 925 Query: 577 HQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 +QLRGRVGR + + Y+P + + + RL ++ + GF IA DL+ R G Sbjct: 926 YQLRGRVGRSTQRGYAYMFYNPTKAMGEEAQKRLEAIQEATELGAGFRIAMRDLEIRGTG 985 Query: 632 EILGIKQSG 640 +LG +QSG Sbjct: 986 NLLGAEQSG 994 >gi|262047218|ref|ZP_06020176.1| transcription-repair coupling factor [Lactobacillus crispatus MV-3A-US] gi|312978409|ref|ZP_07790151.1| transcription-repair coupling factor [Lactobacillus crispatus CTV-05] gi|260572463|gb|EEX29025.1| transcription-repair coupling factor [Lactobacillus crispatus MV-3A-US] gi|310894752|gb|EFQ43824.1| transcription-repair coupling factor [Lactobacillus crispatus CTV-05] Length = 1164 Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 142/429 (33%), Positives = 233/429 (54%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ + E +A + L +++ +K G + + + ++ P+ T Q Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKQFEDAFPYPETPDQL 620 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 ++K+I QDM M R+L GDVG GKT VAL A A++ Q + P ILAQQHY Sbjct: 621 RSVKEIKQDMESSKPMDRLLVGDVGFGKTEVALRAAFKAIQDNKQVAFLVPTTILAQQHY 680 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I+ ++ + +++ ++ +E + +G+ +++GTH + +++ L L+ Sbjct: 681 ETIQDRFKDFPVNTTMLSRFQTPVESKEIIEGLKNGKIDLVVGTHRILSQDVKFKNLGLL 740 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + KL Q VL +TATPIPRTL ++ +G D+S + P R PI Sbjct: 741 IVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800 Query: 459 KTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T + + +I V+ L+ + +G + +++ +I S+ VE+ L + Sbjct: 801 QTYV--MEQIPSVVRDACLREMQRDG-QVFYLHNRI-----SDIDETVEKLQELMPQ--A 850 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 IA HGRMS E ++ F N +L+ TT+IE GID+ + + +IIE+A+H+GL+QL Sbjct: 851 RIAAAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQL 910 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGR+GR ++ LY P L++ RL +++ TE GF IA DL R G Sbjct: 911 YQLRGRIGRSARLAYAYFLYKPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAG 970 Query: 632 EILGIKQSG 640 +LG +Q G Sbjct: 971 NMLGAQQHG 979 >gi|206560380|ref|YP_002231144.1| transcription-repair coupling factor [Burkholderia cenocepacia J2315] gi|198036421|emb|CAR52317.1| transcription-repair coupling factor [Burkholderia cenocepacia J2315] Length = 1164 Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 158/433 (36%), Positives = 230/433 (53%), Gaps = 27/433 (6%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q Sbjct: 604 KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQ 663 Query: 324 AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 +++P +LA+QH + F ++ IVE+ + A+ +I G I+IGT Sbjct: 664 VALLSPTTLLAEQHTQTFADRFADWPVRIVELSRFKTAK-EVNAAIAQINEGSVDIVIGT 722 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G Sbjct: 723 HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 782 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498 D S I P R IKT + R +E + R ++ L G + Y++ ++E E +++ Sbjct: 783 RDFSVIATAPQKRLAIKTFV---RREEESVIREAMLRELKRGGQVYFLHNEVETIENRKA 839 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 ++V + I I HG+M + + E VM F +L+ TT+IE GIDV Sbjct: 840 MLEALVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 890 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616 A+ II+ A+ FGLAQLHQLRGRVGR + LL H P L+K + RL ++ E+ Sbjct: 891 SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEE 950 Query: 617 ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 GF +A DL+ R GE+LG KQSG + Q L+ +L A K K+ ++PDL Sbjct: 951 LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDL 1006 Query: 674 TSVRGQSIRILLY 686 T+ + I L+ Sbjct: 1007 TAPLAATTEINLH 1019 >gi|119945864|ref|YP_943544.1| transcription-repair coupling factor [Psychromonas ingrahamii 37] gi|119864468|gb|ABM03945.1| fused transcription-repair coupling factor and superfamily II helicase [Psychromonas ingrahamii 37] Length = 1163 Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 132/381 (34%), Positives = 212/381 (55%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + PF T Q IK ++ DM M R++ GDVG GKT VA+ A A + Q ++ Sbjct: 607 DFPFEETHDQALTIKAVISDMCSSQPMDRLVCGDVGFGKTEVAMRAAFIATDNLRQVALL 666 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHYE K + + +E+++ ++ LE + G+ I+IGTH L Sbjct: 667 VPTTLLAQQHYENFKDRFADWPVRIEVLSRFKTAKQQKLILEEVNQGKIDILIGTHKLLS 726 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 ++Q+ L L+I+DE+HRFGV+Q+ K+ +L +TATPIPRTL ++ G D+S Sbjct: 727 SNVQFADLGLLIIDEEHRFGVRQKEKIKALRAQIDILTLTATPIPRTLNMSMNGMRDLSI 786 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504 I PA R +KT + + + D++I + + + G + Y++ + EK + + ++ Sbjct: 787 IATPPAKRLAVKTFV--VQKKDQIISDAITREIMRGGQVYFLHNNVATIEKAAHDIQQLI 844 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + + +A+ HG+M++ E +M F + +L+ +T+IE GID+ A+ II Sbjct: 845 PQ---------AKVAVAHGQMNEHQLEKIMADFYHQRQNVLVCSTIIETGIDIPSANTII 895 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFL 619 I A+H GLAQLHQLRGRVGR + LL P ++K++ RL ++ + GF Sbjct: 896 INRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPKPKLMTKDAQKRLQAIEALDTLGAGFT 955 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG +QSG Sbjct: 956 LATHDLEIRGAGELLGDEQSG 976 >gi|149912292|ref|ZP_01900862.1| putative transcription-repair coupling factor [Moritella sp. PE36] gi|149804626|gb|EDM64687.1| putative transcription-repair coupling factor [Moritella sp. PE36] Length = 1106 Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 140/379 (36%), Positives = 215/379 (56%), Gaps = 19/379 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T Q++AI+D++ DM Q M R++ GDVG GKT VA+ A A+ Q ++ P Sbjct: 604 PFEETDDQKTAIQDVMDDMRQNKTMDRLICGDVGFGKTEVAMRAAFMAMMNDKQVAVLVP 663 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQH+E K N + VE+I+ ++ L + +G+ ++IGTH L + Sbjct: 664 TTLLAQQHFENFKDRFANWPVRVEVISRFKTAKEQKLILADVKNGKVDLLIGTHKLLSNK 723 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I+Y L L+++DE+HRFGV+Q+ K+ +L +TATPIPRTL + G D+S I Sbjct: 724 IEYADLGLLVIDEEHRFGVRQKEKVKALRADIDILTLTATPIPRTLNMAMNGMRDLSIIA 783 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERF 507 PA R +KT + + DE I + ++ + G + Y++ +N S+ + Sbjct: 784 TPPAKRLAVKTF---VRQYDENIVKEAIMREIMRGGQVYFL--------HNNVDSIDKTV 832 Query: 508 NSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 +L E + I HG+M++ + ESVM F + +L+ TT+IE GID+ A+ II++ Sbjct: 833 EALAELIPEARIVAAHGQMAERELESVMADFYHQRFNVLVCTTIIETGIDIPSANTIIMD 892 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTE---DGFLIA 621 A++ GLAQLHQLRGRVGR + LL HP +S ++ RL + + E GF +A Sbjct: 893 RADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRISSDAKKRLEAIASLEVLGAGFTLA 952 Query: 622 EEDLKQRKEGEILGIKQSG 640 DL+ R GE+LG +QSG Sbjct: 953 THDLEIRGAGELLGDEQSG 971 >gi|254247951|ref|ZP_04941272.1| Transcription-repair coupling factor [Burkholderia cenocepacia PC184] gi|124872727|gb|EAY64443.1| Transcription-repair coupling factor [Burkholderia cenocepacia PC184] Length = 1164 Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 158/433 (36%), Positives = 230/433 (53%), Gaps = 27/433 (6%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q Sbjct: 604 KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQ 663 Query: 324 AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 +++P +LA+QH + F ++ IVE+ + A+ +I G I+IGT Sbjct: 664 VALLSPTTLLAEQHTQTFADRFADWPVRIVELSRFKTAK-EVNAAIAQINEGSVDIVIGT 722 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G Sbjct: 723 HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 782 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498 D S I P R IKT + R +E + R ++ L G + Y++ ++E E +++ Sbjct: 783 RDFSVIATAPQKRLAIKTFV---RREEESVIREAMLRELKRGGQVYFLHNEVETIENRKA 839 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 ++V + I I HG+M + + E VM F +L+ TT+IE GIDV Sbjct: 840 MLEALVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 890 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616 A+ II+ A+ FGLAQLHQLRGRVGR + LL H P L+K + RL ++ E+ Sbjct: 891 SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEE 950 Query: 617 ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 GF +A DL+ R GE+LG KQSG + Q L+ +L A K K+ ++PDL Sbjct: 951 LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDL 1006 Query: 674 TSVRGQSIRILLY 686 T+ + I L+ Sbjct: 1007 TAPLAATTEINLH 1019 >gi|54293927|ref|YP_126342.1| transcription-repair coupling factor [Legionella pneumophila str. Lens] gi|53753759|emb|CAH15217.1| Transcription-repair coupling factor [Legionella pneumophila str. Lens] Length = 1153 Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 144/384 (37%), Positives = 202/384 (52%), Gaps = 17/384 (4%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K PF+ T Q AI+ I++DM M R++ GDVG GKT VA+ A AV+ G Q Sbjct: 595 KFASGFPFTETPDQLQAIEQIIKDMQSPRPMDRLICGDVGFGKTEVAMRAAFVAVQNGKQ 654 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 I+AP +LA QH+E + + +E+++ L + G+ I+IGTH Sbjct: 655 VCILAPTTLLAGQHFESFRDRFAEFPVNIELLSRFRSNKESEAVLAALQSGKVDIVIGTH 714 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443 LFQ++I + L L+I+DE+HRFGV+Q+ + T +L MTATPIPRTL + G Sbjct: 715 KLFQNNISFKNLGLLIIDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLNMAMAGIR 774 Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503 DIS I PA R IKT N + L+ +L G+ Y N Sbjct: 775 DISLIATPPAKRLAIKTFWQEKNDLTIREAILREILRGGQVFYL----------HNNVQT 824 Query: 504 VERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 +ER E + I HG+M + E +M F + +L+ TT+IE GID+ A+ Sbjct: 825 IERVCQDLEALVPEAKIQSAHGQMRERQLERIMSDFYHHRFNVLVCTTIIETGIDIPTAN 884 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED--- 616 III+ A+ FGLAQLHQLRGRVGR + LL L+ ++ RL + + ED Sbjct: 885 TIIIDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPNEKLLTPDAVKRLEAIVSLEDLGA 944 Query: 617 GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 945 GFTLATHDLEIRGAGELLGEEQSG 968 >gi|312792831|ref|YP_004025754.1| transcription-repair coupling factor [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179971|gb|ADQ40141.1| transcription-repair coupling factor [Caldicellulosiruptor kristjanssonii 177R1B] Length = 1141 Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 141/429 (32%), Positives = 234/429 (54%), Gaps = 18/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW ++ E++A + L ++Q K G + + ++ P++ T+ Q Sbjct: 554 EWQKQKQKVRKSLEIVAKDLVELYAKRQLHK--GFKFSKDTLWQKEFEEKFPYTETEGQL 611 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 AI++I +DM + M RIL GDVG GKT VA+ A AV Q ++ P ILAQQHY Sbjct: 612 QAIEEIKRDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVLVPTTILAQQHY 671 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 ++ + +E+++ + ++K ++ + G I+IGTH L +++ L L+ Sbjct: 672 MTFSARMKDFPVTIEVLSRLKNETQQKKIIKGLKEGTIDIVIGTHRLLSSDVKFKDLGLL 731 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+H+FGV+ + K+ + T VL +TATPIPRTL + LG D+S I + P R P+ Sbjct: 732 IIDEEHKFGVEAKEKIKKLKTNVDVLTLTATPIPRTLNMALLGIRDLSVIEDPPEDRYPV 791 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T ++ N I E I R +S G + +++ +I++ +E V + +L + Sbjct: 792 QTFVLEYNERIIKEAILR---EISRGGQVFYLYNRIKDIQE-----VAAKLQNLVGD-SI 842 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 +A HG+M + + E V+ F G +L+ TT+IE G+D+ + + +I+E+++ GLAQL Sbjct: 843 KVACAHGQMPEEELERVLLDFIEGRYDVLVCTTIIESGVDMPNVNTLIVEDSDRLGLAQL 902 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGRVGR ++ + LS+ + RL+ +K TE GF IA DL+ R G Sbjct: 903 YQLRGRVGRSNRLAYAYFTFRKDKVLSEQAQKRLAAIKEFTELGSGFKIAMRDLEIRGAG 962 Query: 632 EILGIKQSG 640 +LG Q G Sbjct: 963 SVLGKLQHG 971 >gi|126453184|ref|YP_001066662.1| transcription-repair coupling factor [Burkholderia pseudomallei 1106a] gi|167846208|ref|ZP_02471716.1| transcription-repair coupling factor [Burkholderia pseudomallei B7210] gi|167911421|ref|ZP_02498512.1| transcription-repair coupling factor [Burkholderia pseudomallei 112] gi|242317637|ref|ZP_04816653.1| transcription-repair coupling factor [Burkholderia pseudomallei 1106b] gi|254198050|ref|ZP_04904472.1| transcription-repair coupling factor [Burkholderia pseudomallei S13] gi|126226826|gb|ABN90366.1| transcription-repair coupling factor [Burkholderia pseudomallei 1106a] gi|169654791|gb|EDS87484.1| transcription-repair coupling factor [Burkholderia pseudomallei S13] gi|242140876|gb|EES27278.1| transcription-repair coupling factor [Burkholderia pseudomallei 1106b] Length = 1189 Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 158/433 (36%), Positives = 229/433 (52%), Gaps = 27/433 (6%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q Sbjct: 627 KFADSFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 686 Query: 324 AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 +++P +LA+QH + F ++ IVE+ + A+ +I G I+IGT Sbjct: 687 VALLSPTTLLAEQHTQTFADRFADWPVRIVELSRFKTAK-EVNAAIAQINEGSVDIVIGT 745 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G Sbjct: 746 HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 805 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498 D S I P R IKT + R +E + R ++ L G + Y++ ++E E +++ Sbjct: 806 RDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKA 862 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + I I HG+M + + E VM F +L+ TT+IE GIDV Sbjct: 863 MLEELVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 913 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616 A+ II+ A+ FGLAQLHQLRGRVGR + LL H P L+K + RL ++ E+ Sbjct: 914 SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEE 973 Query: 617 ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 GF +A DL+ R GE+LG KQSG + Q L+ +L A K K+ ++PDL Sbjct: 974 LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDL 1029 Query: 674 TSVRGQSIRILLY 686 T+ + I L+ Sbjct: 1030 TAPLAATTEINLH 1042 >gi|161524500|ref|YP_001579512.1| transcription-repair coupling factor [Burkholderia multivorans ATCC 17616] gi|221215034|ref|ZP_03588001.1| transcription-repair coupling factor [Burkholderia multivorans CGD1] gi|160341929|gb|ABX15015.1| transcription-repair coupling factor [Burkholderia multivorans ATCC 17616] gi|221164970|gb|EED97449.1| transcription-repair coupling factor [Burkholderia multivorans CGD1] Length = 1156 Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 158/433 (36%), Positives = 229/433 (52%), Gaps = 27/433 (6%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q Sbjct: 596 KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 655 Query: 324 AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 +++P +LA+QH + F ++ IVE+ + A+ +I G I+IGT Sbjct: 656 VALLSPTTLLAEQHTQTFADRFADWPVRIVELSRFKTTK-EVNAAIAQINEGSVDIVIGT 714 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G Sbjct: 715 HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 774 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498 D S I P R IKT + R +E + R ++ L G + Y++ ++E E +++ Sbjct: 775 RDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKA 831 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + I I HG+M + + E VM F +L+ TT+IE GIDV Sbjct: 832 MLEELVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 882 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616 A+ II+ A+ FGLAQLHQLRGRVGR + LL H P L+K + RL ++ E+ Sbjct: 883 SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEE 942 Query: 617 ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 GF +A DL+ R GE+LG KQSG + Q L+ +L A K K+ ++PDL Sbjct: 943 LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDL 998 Query: 674 TSVRGQSIRILLY 686 T+ + I L+ Sbjct: 999 TAPLAATTEINLH 1011 >gi|189350744|ref|YP_001946372.1| transcription-repair coupling factor [Burkholderia multivorans ATCC 17616] gi|189334766|dbj|BAG43836.1| transcription-repair coupling factor [Burkholderia multivorans ATCC 17616] Length = 1185 Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 158/433 (36%), Positives = 229/433 (52%), Gaps = 27/433 (6%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q Sbjct: 625 KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 684 Query: 324 AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 +++P +LA+QH + F ++ IVE+ + A+ +I G I+IGT Sbjct: 685 VALLSPTTLLAEQHTQTFADRFADWPVRIVELSRFKTTK-EVNAAIAQINEGSVDIVIGT 743 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G Sbjct: 744 HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 803 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498 D S I P R IKT + R +E + R ++ L G + Y++ ++E E +++ Sbjct: 804 RDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKA 860 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + I I HG+M + + E VM F +L+ TT+IE GIDV Sbjct: 861 MLEELVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 911 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616 A+ II+ A+ FGLAQLHQLRGRVGR + LL H P L+K + RL ++ E+ Sbjct: 912 SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEE 971 Query: 617 ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 GF +A DL+ R GE+LG KQSG + Q L+ +L A K K+ ++PDL Sbjct: 972 LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDL 1027 Query: 674 TSVRGQSIRILLY 686 T+ + I L+ Sbjct: 1028 TAPLAATTEINLH 1040 >gi|217421496|ref|ZP_03453000.1| transcription-repair coupling factor [Burkholderia pseudomallei 576] gi|217395238|gb|EEC35256.1| transcription-repair coupling factor [Burkholderia pseudomallei 576] Length = 1189 Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 158/433 (36%), Positives = 229/433 (52%), Gaps = 27/433 (6%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q Sbjct: 627 KFADSFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 686 Query: 324 AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 +++P +LA+QH + F ++ IVE+ + A+ +I G I+IGT Sbjct: 687 VALLSPTTLLAEQHTQTFADRFADWPVRIVELSRFKTAK-EVNAAIAQINEGSVDIVIGT 745 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G Sbjct: 746 HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 805 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498 D S I P R IKT + R +E + R ++ L G + Y++ ++E E +++ Sbjct: 806 RDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKA 862 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + I I HG+M + + E VM F +L+ TT+IE GIDV Sbjct: 863 MLEELVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 913 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616 A+ II+ A+ FGLAQLHQLRGRVGR + LL H P L+K + RL ++ E+ Sbjct: 914 SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEE 973 Query: 617 ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 GF +A DL+ R GE+LG KQSG + Q L+ +L A K K+ ++PDL Sbjct: 974 LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDL 1029 Query: 674 TSVRGQSIRILLY 686 T+ + I L+ Sbjct: 1030 TAPLAATTEINLH 1042 >gi|148360394|ref|YP_001251601.1| transcription repair coupling factor [Legionella pneumophila str. Corby] gi|296106539|ref|YP_003618239.1| transcription-repair coupling factor (superfamily II helicase) [Legionella pneumophila 2300/99 Alcoy] gi|148282167|gb|ABQ56255.1| transcription repair coupling factor [Legionella pneumophila str. Corby] gi|295648440|gb|ADG24287.1| transcription-repair coupling factor (superfamily II helicase) [Legionella pneumophila 2300/99 Alcoy] Length = 1153 Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 144/384 (37%), Positives = 202/384 (52%), Gaps = 17/384 (4%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K PF+ T Q AI+ I++DM M R++ GDVG GKT VA+ A AV+ G Q Sbjct: 595 KFASGFPFTETPDQLQAIEQIIRDMQSPRPMDRLICGDVGFGKTEVAMRAAFVAVQNGKQ 654 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 I+AP +LA QH+E + + +E+++ L + G+ I+IGTH Sbjct: 655 VCILAPTTLLAGQHFESFRDRFAEFPVNIELLSRFRSNKESEAVLAALQSGKVDIVIGTH 714 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443 LFQ++I + L L+I+DE+HRFGV+Q+ + T +L MTATPIPRTL + G Sbjct: 715 KLFQNNISFKNLGLLIIDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLNMAMAGIR 774 Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503 DIS I PA R IKT N + L+ +L G+ Y N Sbjct: 775 DISLIATPPAKRLAIKTFWQEKNDLTIREAILREILRGGQVFYL----------HNNVQT 824 Query: 504 VERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 +ER E + I HG+M + E +M F + +L+ TT+IE GID+ A+ Sbjct: 825 IERVCQDLEALVPEAKIQSAHGQMRERQLERIMSDFYHHRFNVLVCTTIIETGIDIPTAN 884 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED--- 616 III+ A+ FGLAQLHQLRGRVGR + LL L+ ++ RL + + ED Sbjct: 885 TIIIDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPNEKLLTPDAVKRLEAIVSLEDLGA 944 Query: 617 GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 945 GFTLATHDLEIRGAGELLGEEQSG 968 >gi|297587541|ref|ZP_06946185.1| transcription-repair coupling factor [Finegoldia magna ATCC 53516] gi|297574230|gb|EFH92950.1| transcription-repair coupling factor [Finegoldia magna ATCC 53516] Length = 1168 Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 152/447 (34%), Positives = 243/447 (54%), Gaps = 30/447 (6%) Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288 + DE+ + L R + K G + + + ++ + P+ T SQ +I++I DM Sbjct: 586 SVDEMADDLVELYSKRAKLK---GYQFSQDTEWQREFEDSFPYEETDSQVRSIEEIKTDM 642 Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348 M R+L GDVG GKT VA+ A A+ G Q + P ILAQQH+ IK+ ++ Sbjct: 643 ESDRPMDRLLCGDVGYGKTEVAIRACFKAIMDGKQVAFLVPTTILAQQHFNTIKERFRDY 702 Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408 I VE+++ + A +++ ++ + G +++GTH + ++++ L L+++DE+ RFGV Sbjct: 703 PIRVEMMSRFVSPARQKQIMKDVQRGLVDLLVGTHRILSKNLKFKDLGLLVIDEEQRFGV 762 Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-- 466 + + KL VL ++ATPIPRTL + G D+S + E P R PI T + N Sbjct: 763 RHKEKLKSMRENVDVLTLSATPIPRTLQMGLTGIRDMSLLEEPPEDRTPISTYVTEYNPS 822 Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF--RSVVERFNSLHEHFTSSIAIIHGR 524 I + I R L G + Y++ +IE+ + F + +V N IAI HGR Sbjct: 823 LIRDAIIR---ELDRGGQIYFVYNRIEDIDQMEFKLKELVPELN---------IAIAHGR 870 Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584 M++ + E+VM F++G LL+ TT+IE G+D+ + + +II NA+ GL+QL+QL+GR+G Sbjct: 871 MNEKELENVMLDFQDGIYDLLLCTTIIETGLDIQNVNTMIIYNADKMGLSQLYQLKGRIG 930 Query: 585 RGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQS 639 R + S Y L++ S RL +K+ TE GF IA DL+ R G +LG Q Sbjct: 931 RSDRTSFAYFTYEGQKSLTEISEKRLMAIKDFTEFGSGFKIAMRDLELRGAGNLLGESQH 990 Query: 640 GMPKFLIAQ--PELHDSLLEIARKDAK 664 G IA+ +L+ LLE A ++AK Sbjct: 991 GH----IAKIGYDLYVKLLEQAVREAK 1013 >gi|284048953|ref|YP_003399292.1| transcription-repair coupling factor [Acidaminococcus fermentans DSM 20731] gi|283953174|gb|ADB47977.1| transcription-repair coupling factor [Acidaminococcus fermentans DSM 20731] Length = 1092 Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 137/382 (35%), Positives = 216/382 (56%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + PF T Q AI +I DM + M R+L GDVG GKT VA+ A AV G Q ++ Sbjct: 547 SFPFEETPDQLKAIAEIKADMEKPVPMERLLCGDVGYGKTEVAIRAAFKAVMDGKQVAVL 606 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 AP +LAQQH + + + VE+++ +R+ +ER+A G+ ++IGTH + Sbjct: 607 APTTVLAQQHLLTFTQRMGSFGVRVEMLSRFRTPKQQREIMERVAEGKIDVLIGTHRILN 666 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 ++++ L L+I+DE+ RFGV Q+ K+ Q++ VL ++ATPIPRTL L + D+S Sbjct: 667 PDVEFHDLGLLIIDEEQRFGVAQKEKIKQRSAGIDVLTLSATPIPRTLHLALVKGRDMSI 726 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSV 503 I P R P++T + + + E +ER + G + Y++ +IE + ++ R + Sbjct: 727 IESPPEDRLPVETYVAEYDDGMVREALER---EIRRGGRIYYVHNRIEGLSRIAAHLREL 783 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 V +I + HGRM++ + E VM F G +L++TT+IE G+DV A+ I Sbjct: 784 VPGI---------TIGLAHGRMTEDELEDVMLGFYQGDFDVLLSTTIIENGLDVPLANTI 834 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GF 618 II+ AE+FGL+QL+Q+RGRVGR ++ LY LS+ + RL +++ + GF Sbjct: 835 IIDGAENFGLSQLYQMRGRVGRSSRLAYAYFLYKKDRVLSEVAQKRLQAIRDFTELGAGF 894 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 IA DL+ R G +LG +Q G Sbjct: 895 KIAMRDLEIRGAGNLLGAEQHG 916 >gi|291535574|emb|CBL08686.1| transcription-repair coupling factor [Roseburia intestinalis M50/1] Length = 1176 Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 143/406 (35%), Positives = 226/406 (55%), Gaps = 15/406 (3%) Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 QE AI+ +DM M R++ GDVG GKT +A+ A AV+ G Q + P ILAQ Sbjct: 630 DQELAIEATKKDMESTKIMDRLICGDVGYGKTEIAIRAAFKAVQDGKQVAFLVPTTILAQ 689 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 QHY + ++ + ++++ A ++K +E + G IIIGTH L + Y L Sbjct: 690 QHYNNFVQRMKDFPVNIDLLCRFRSSAEQKKTVEALKKGSVDIIIGTHRLLSKDVVYKDL 749 Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 L+I+DE+ RFGV + K+ Q T VL +TATPIPRTL ++ +G D+S + E P R Sbjct: 750 GLLIIDEEQRFGVTHKEKIKQLKTNIDVLTLTATPIPRTLHMSLIGIRDMSVLEEPPMDR 809 Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 PI+T ++ N + V E + LS G +AY++ ++ E V + L Sbjct: 810 VPIQTYVMEYNE-ELVREAISRELSRGGQAYYVYNRVRE-----IADVAAKIAELVPE-- 861 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 +++A HG+M + + E++M F NG +L++TT+IE G+D+ + + +II +A++ GL+Q Sbjct: 862 ANVAYAHGQMKETELENIMYRFINGEIDVLVSTTIIETGLDISNVNTMIIHDADNMGLSQ 921 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGRVGR + L+Y L + + RL+ +K TE GF IA DL+ R Sbjct: 922 LYQLRGRVGRSNRTAYAFLMYRRDKMLKEIAEKRLAAIKEYTELGSGFKIAMRDLEIRGA 981 Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676 G +LG +Q G + + +L+ +L A K+AK + + TS+ Sbjct: 982 GNLLGAEQHGHMEAV--GYDLYCKMLNEAVKEAKGMDVAESFDTSI 1025 >gi|238917833|ref|YP_002931350.1| transcription-repair coupling factor (superfamily II helicase) [Eubacterium eligens ATCC 27750] gi|238873193|gb|ACR72903.1| transcription-repair coupling factor (superfamily II helicase) [Eubacterium eligens ATCC 27750] Length = 1206 Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 133/385 (34%), Positives = 213/385 (55%), Gaps = 17/385 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ P+ T Q +AI+D DM + M R++ GDVG GKT +A+ A AV+ G Sbjct: 639 QEFEEMFPYEETTDQLNAIEDTKHDMESRRVMDRLICGDVGYGKTEIAIRAAFKAVQEGK 698 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q + P +LA QH+ ++ ++ + V ++ A ++ +E + G I+IGT Sbjct: 699 QVAYLVPTTVLASQHFTTFEQRMKDFPVTVAQLSSFRTSAQNKETIEELKKGMVDIVIGT 758 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L + + L L+I+DE+ RFGV + K+ + VL ++ATPIPRTL ++ G Sbjct: 759 HRLLSKDVVFKDLGLLIIDEEQRFGVTHKEKIKKLKNNVDVLTLSATPIPRTLHMSLAGI 818 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D+S + E P R PI+T + N DE+I E + L+ + Y++ ++ R Sbjct: 819 RDMSVLEEPPVDRVPIQTFVTEHN--DEMIREAITRELARNGQVYYVYNRV--------R 868 Query: 502 SVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560 S+ E + E +++A HG+M+ + E +M F NG +L++TT+IE G+D+ + Sbjct: 869 SIDEAAAHIQELVPDANVAYAHGQMAKRELEKIMCDFVNGEIDVLVSTTIIETGMDISNC 928 Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616 + +IIE+A+ FGL+QL+QLRGRVGR + LLY L++ + RLSV++ D Sbjct: 929 NTMIIEDADRFGLSQLYQLRGRVGRSSRTAYAFLLYRRDKVLTEVAEKRLSVIREFADFG 988 Query: 617 -GFLIAEEDLKQRKEGEILGIKQSG 640 GF IA +DL+ R G +LG Q G Sbjct: 989 SGFKIAMKDLEIRGAGNVLGNSQHG 1013 >gi|218295465|ref|ZP_03496278.1| transcription factor CarD [Thermus aquaticus Y51MC23] gi|218244097|gb|EED10623.1| transcription factor CarD [Thermus aquaticus Y51MC23] Length = 699 Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 140/401 (34%), Positives = 218/401 (54%), Gaps = 15/401 (3%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 P T Q A++++L+D+ + M R++ GDVG GKT VAL A V G Q + Sbjct: 159 GFPHELTPDQRQALEEVLRDLESPHPMDRLVSGDVGFGKTEVALRAAHRVVGHGAQVAFL 218 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LA+QH ++ + + VE+++ P L+ + G+ I+IGTH L Q Sbjct: 219 VPTTLLAEQHGRTFRERFRGLPVRVEVLSRFTPPKEEGAILKDLKEGRVDIVIGTHRLLQ 278 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + + L L+IVDE+HRFGV Q+ ++ + L ++ATPIPRTL +G D+S Sbjct: 279 PDVAFKDLGLLIVDEEHRFGVAQKERIRELKENVDTLYLSATPIPRTLYSALVGLKDLSS 338 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 I P GRKPIKT + P + + V E + L G KA+++ ++ S+ R Sbjct: 339 IKTPPPGRKPIKTFLAPFDPL-LVREAILNELERGGKAFYVHHRVA--------SIEARR 389 Query: 508 NSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 L + + I ++HG+M + E M F G +L+ATT+IE G+DV +A I+IE Sbjct: 390 RYLEDLVPEARIGVVHGQMPEGLIEETMMLFAEGAYDVLLATTIIEAGLDVPEAGTILIE 449 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEE 623 A+ GLA L+QLRGRVGR ++ + L + P L++ + RL + + D G L+AE+ Sbjct: 450 RADLLGLATLYQLRGRVGRRDQEAYAYLFHPPRLTEAAEKRLHAIADLSDLGSGHLLAEK 509 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 D++ R G +LG +Q G + L E++ LLE A + K Sbjct: 510 DMEIRGVGNLLGPEQHGHIRALSL--EVYTELLEEALRKLK 548 >gi|301165394|emb|CBW24965.1| transcription-repair coupling factor [Bacteriovorax marinus SJ] Length = 1165 Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 136/380 (35%), Positives = 219/380 (57%), Gaps = 19/380 (5%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 PF T Q +A+ ++++ M + M ++ GDVG GKT VA+ A AV Q ++ Sbjct: 617 FPFQETPDQINAVNEVIESMQKPIAMDHLVCGDVGFGKTEVAMRAAFKAVLDKKQVCVLV 676 Query: 329 PIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LA QHY F+K++++ + +E ++ ++ +E++ G+ I+IGTH L Sbjct: 677 PTTVLALQHYNSFVKRFSK-FPVEIEFLSRFKTAKQTKEVIEKLKDGKIDILIGTHKLLS 735 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 D I+Y L LVIVDE+ RFGV + KL L +TATPIPRTL L+ LG ++S Sbjct: 736 DKIKYQDLGLVIVDEEQRFGVAHKEKLKLLKANVDFLTLTATPIPRTLQLSFLGIREMSL 795 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 I P R+ IK+ +I + + + +K L+ G + + + ++ S ++ F Sbjct: 796 IQTAPPRRQSIKSYLIKEDDL-TLQTAIKKELNRGGQVFIVHNKV---------SDIDHF 845 Query: 508 NSLHEHFTSSIAII--HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 ++ + I+ HG+MS+ + E M +F NGT ++LI+TT+IE GID+ +A+ +II Sbjct: 846 SNYIQELVPEAKIVYAHGQMSEKELEEKMSAFYNGTYQILISTTIIESGIDIPNANTMII 905 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLI 620 + A+++GLAQLHQLRGR+GR ++ + + H P+S+ + RL L+ D GF I Sbjct: 906 DRADNYGLAQLHQLRGRIGRSDKKAYAYFVIPKHKPISEIAQRRLKALQTYADMGSGFNI 965 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R G+ILG +QSG Sbjct: 966 ATCDLEIRGAGDILGAEQSG 985 >gi|242068687|ref|XP_002449620.1| hypothetical protein SORBIDRAFT_05g020300 [Sorghum bicolor] gi|241935463|gb|EES08608.1| hypothetical protein SORBIDRAFT_05g020300 [Sorghum bicolor] Length = 834 Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 130/379 (34%), Positives = 217/379 (57%), Gaps = 17/379 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 P+ PT Q A D+ +D++++ M R++ GDVG GKT VA+ A+ V AG QA+++A Sbjct: 278 PYEPTPDQCQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAMRAIFIVVSAGFQAMVLA 337 Query: 329 PIGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILA+QHY+ + +++ +I + I +G + + + + +I +G HII+GTHAL Sbjct: 338 PTIILAKQHYDVMTERFANYPEIKIAIFSGAQSKEEKDELITKIKNGDLHIIVGTHALLT 397 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + + Y L L++VDE+ +FGVQQ+ K+ ++ VL ++ATPIPRTL L G D S Sbjct: 398 ERMVYSNLGLLVVDEEQKFGVQQKEKIASYKSSIDVLTLSATPIPRTLYLALTGFRDASL 457 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 ++ P R +KT + ++ + + +K L G + +++ P+I +++ + Sbjct: 458 MSTPPPERVAVKTYVSAFSK-ERALSAIKFELQRGGQVFYVVPRI--------KAIDDVL 508 Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 L + IA+ HG+ + M+ F +G K+L+ T +IE GID+ +A+ +I++ Sbjct: 509 QFLKDSLPDVPIAVAHGKKMSKSIQLAMEDFASGEVKILVCTHIIESGIDIANANTMIVQ 568 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIA 621 AE +GLAQL+QLRGRVGR L Y LS+ + RL ++ + GF +A Sbjct: 569 FAELYGLAQLYQLRGRVGRSGREGFAYLFYTDKSLLSRVATDRLGAIEEHSELGQGFHVA 628 Query: 622 EEDLKQRKEGEILGIKQSG 640 E+D+ R G + G +QSG Sbjct: 629 EKDMGIRGFGSLFGDQQSG 647 >gi|221198238|ref|ZP_03571284.1| transcription-repair coupling factor [Burkholderia multivorans CGD2M] gi|221209180|ref|ZP_03582172.1| transcription-repair coupling factor [Burkholderia multivorans CGD2] gi|221170918|gb|EEE03373.1| transcription-repair coupling factor [Burkholderia multivorans CGD2] gi|221182170|gb|EEE14571.1| transcription-repair coupling factor [Burkholderia multivorans CGD2M] Length = 1156 Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 158/433 (36%), Positives = 229/433 (52%), Gaps = 27/433 (6%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q Sbjct: 596 KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 655 Query: 324 AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 +++P +LA+QH + F ++ IVE+ + A+ +I G I+IGT Sbjct: 656 VALLSPTTLLAEQHTQTFADRFADWPVRIVELSRFKTTK-EVNAAIAQINEGSVDIVIGT 714 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G Sbjct: 715 HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 774 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498 D S I P R IKT + R +E + R ++ L G + Y++ ++E E +++ Sbjct: 775 RDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKA 831 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + I I HG+M + + E VM F +L+ TT+IE GIDV Sbjct: 832 MLEELVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 882 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616 A+ II+ A+ FGLAQLHQLRGRVGR + LL H P L+K + RL ++ E+ Sbjct: 883 SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEE 942 Query: 617 ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 GF +A DL+ R GE+LG KQSG + Q L+ +L A K K+ ++PDL Sbjct: 943 LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDL 998 Query: 674 TSVRGQSIRILLY 686 T+ + I L+ Sbjct: 999 TAPLAATTEINLH 1011 >gi|53719711|ref|YP_108697.1| transcription-repair coupling factor [Burkholderia pseudomallei K96243] gi|76810493|ref|YP_333905.1| transcription-repair coupling factor [Burkholderia pseudomallei 1710b] gi|126438362|ref|YP_001059391.1| transcription-repair coupling factor [Burkholderia pseudomallei 668] gi|134277056|ref|ZP_01763771.1| transcription-repair coupling factor [Burkholderia pseudomallei 305] gi|167720072|ref|ZP_02403308.1| transcription-repair coupling factor [Burkholderia pseudomallei DM98] gi|167739084|ref|ZP_02411858.1| transcription-repair coupling factor [Burkholderia pseudomallei 14] gi|167824679|ref|ZP_02456150.1| transcription-repair coupling factor [Burkholderia pseudomallei 9] gi|167903188|ref|ZP_02490393.1| transcription-repair coupling factor [Burkholderia pseudomallei NCTC 13177] gi|226196247|ref|ZP_03791831.1| transcription-repair coupling factor [Burkholderia pseudomallei Pakistan 9] gi|237812718|ref|YP_002897169.1| transcription-repair coupling factor [Burkholderia pseudomallei MSHR346] gi|254179398|ref|ZP_04885997.1| transcription-repair coupling factor [Burkholderia pseudomallei 1655] gi|254189215|ref|ZP_04895726.1| transcription-repair coupling factor [Burkholderia pseudomallei Pasteur 52237] gi|254258111|ref|ZP_04949165.1| transcription-repair coupling factor [Burkholderia pseudomallei 1710a] gi|52210125|emb|CAH36103.1| transcription-repair coupling factor [Burkholderia pseudomallei K96243] gi|76579946|gb|ABA49421.1| transcription-repair coupling factor [Burkholderia pseudomallei 1710b] gi|126217855|gb|ABN81361.1| transcription-repair coupling factor [Burkholderia pseudomallei 668] gi|134250706|gb|EBA50785.1| transcription-repair coupling factor [Burkholderia pseudomallei 305] gi|157936894|gb|EDO92564.1| transcription-repair coupling factor [Burkholderia pseudomallei Pasteur 52237] gi|184209938|gb|EDU06981.1| transcription-repair coupling factor [Burkholderia pseudomallei 1655] gi|225931703|gb|EEH27706.1| transcription-repair coupling factor [Burkholderia pseudomallei Pakistan 9] gi|237506667|gb|ACQ98985.1| transcription-repair coupling factor [Burkholderia pseudomallei MSHR346] gi|254216800|gb|EET06184.1| transcription-repair coupling factor [Burkholderia pseudomallei 1710a] Length = 1189 Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 158/433 (36%), Positives = 229/433 (52%), Gaps = 27/433 (6%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q Sbjct: 627 KFADSFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 686 Query: 324 AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 +++P +LA+QH + F ++ IVE+ + A+ +I G I+IGT Sbjct: 687 VALLSPTTLLAEQHTQTFADRFADWPVRIVELSRFKTAK-EVNAAIAQINEGSVDIVIGT 745 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G Sbjct: 746 HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 805 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498 D S I P R IKT + R +E + R ++ L G + Y++ ++E E +++ Sbjct: 806 RDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKA 862 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + I I HG+M + + E VM F +L+ TT+IE GIDV Sbjct: 863 MLEELVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 913 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616 A+ II+ A+ FGLAQLHQLRGRVGR + LL H P L+K + RL ++ E+ Sbjct: 914 SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEE 973 Query: 617 ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 GF +A DL+ R GE+LG KQSG + Q L+ +L A K K+ ++PDL Sbjct: 974 LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDL 1029 Query: 674 TSVRGQSIRILLY 686 T+ + I L+ Sbjct: 1030 TAPLAATTEINLH 1042 >gi|295689522|ref|YP_003593215.1| transcription-repair coupling factor [Caulobacter segnis ATCC 21756] gi|295431425|gb|ADG10597.1| transcription-repair coupling factor [Caulobacter segnis ATCC 21756] Length = 1155 Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 150/430 (34%), Positives = 233/430 (54%), Gaps = 36/430 (8%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 P+ T Q SAI D+L+D+S M R++ GDVG GKT VAL A +G Q I+ Sbjct: 603 FPYEETDDQLSAIHDVLEDLSSGKPMDRLICGDVGFGKTEVALRAAFVVAMSGKQVAIVC 662 Query: 329 PIGILAQQHYEFIKKYTQNTQIIV----EIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384 P +LA+QHY+ K Q + V ++TG R E +A+GQ I++GTHA Sbjct: 663 PTTLLARQHYKTFKDRFQGWPVKVTRLSRLVTGKEAAETR----EGLANGQFEIVVGTHA 718 Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444 + + + L LVIVDE+ FGV+ + KL + H+L +TATPIPRTL + G + Sbjct: 719 ILSKQVSFKDLGLVIVDEEQHFGVKHKEKLKELRADVHMLTLTATPIPRTLQMALSGIRE 778 Query: 445 ISKITEKPAGRKPIKTVIIPINRID--EVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502 +S I P R ++T I P + + E + R K G ++Y++ P+I++ ++ Sbjct: 779 MSIIATPPVDRLAVRTYISPFDPVTLREALLREKY---RGGQSYYVVPRIKDLED----- 830 Query: 503 VVERFNSLHEHFTSSIAII-HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 +E+F L ++ HG+MS E VM +F G +L+ATT++E G+D+ A+ Sbjct: 831 -IEKF--LRTQVPEVKYVVGHGQMSATQLEDVMTAFYEGQYDVLLATTIVESGLDIPSAN 887 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED--- 616 +I+ A+ FGLAQL+Q+RGRVGR + + L L+ ++ RL VL++ + Sbjct: 888 TLIVHRADMFGLAQLYQIRGRVGRSKARAYAYLTTPVEKSLTLSAEKRLQVLQSLDSLGA 947 Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFL---IAQPELHDSLLEIARKDAKHILTQDPDL 673 GF +A DL QR G +LG +QSG K + + Q L D++ E+ ++ + L +D Sbjct: 948 GFQLASHDLDQRGGGNLLGDEQSGHIKEIGVELYQQMLEDAVAELKQRQGQEALLED--- 1004 Query: 674 TSVRGQSIRI 683 RG S +I Sbjct: 1005 ---RGWSPQI 1011 >gi|34541397|ref|NP_905876.1| transcription-repair coupling factor [Porphyromonas gingivalis W83] gi|34397714|gb|AAQ66775.1| transcription-repair coupling factor [Porphyromonas gingivalis W83] Length = 1122 Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 143/408 (35%), Positives = 220/408 (53%), Gaps = 15/408 (3%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + Q K+E G + + + ++ + + T QE A ++ DM M R++ Sbjct: 523 LIRLYAQRKEERGFAFSPDSYLQHELEASFLYEDTPDQERATAEVKADMESDRPMDRLIC 582 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A A G Q I+ P +LA QHY+ + QN + +E I+ Sbjct: 583 GDVGFGKTEVAVRAAFKAATDGKQVAILVPTTVLAYQHYQTFRDRLQNFPVRIEYISRAR 642 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + L +A G+ IIIGTH L + I+++ L L+++DE+ +FGV + KL + Sbjct: 643 SAKDIKAILHDLAEGRIDIIIGTHRLVSNDIRFHDLGLLVIDEEQKFGVAVKEKLRKLQV 702 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 L M+ATPIPRTL + +G D+S I P R P+ T + + D V E + + Sbjct: 703 NVDTLTMSATPIPRTLQFSLMGARDLSNINTPPPNRYPVATELARFS-PDIVREAVNFEM 761 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 S + + + +I+ +E +V+R E + +A+ HGRMS + E ++ F + Sbjct: 762 SRNGQVFIVHNRIDNIEE--IAGIVQR-----EVPDARVAVGHGRMSPTELERLILDFVH 814 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 +L+ATT+IE GIDV +A+ III++A +GL++LHQLRGRVGR + C LL PP Sbjct: 815 YEYDVLVATTIIENGIDVPNANTIIIDDAHRYGLSELHQLRGRVGRSNRKAFCYLL-SPP 873 Query: 600 ---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 LS +S RL ++N D G IA +DL R G +LG +QSG Sbjct: 874 LSVLSDDSRRRLQAIENFSDLGSGIRIALQDLDIRGAGNVLGAEQSGF 921 >gi|91783503|ref|YP_558709.1| transcription-repair coupling factor [Burkholderia xenovorans LB400] gi|91687457|gb|ABE30657.1| transcription-repair coupling factor [Burkholderia xenovorans LB400] Length = 1160 Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 159/441 (36%), Positives = 228/441 (51%), Gaps = 19/441 (4%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G +E K K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL Sbjct: 585 GHAFALEPKDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVAL 644 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A AV G Q +++P +LA+QH + + + + ++ A+ +I Sbjct: 645 RAAFIAVMGGKQVALLSPTTLLAEQHTQTFTDRFSDWPVRIAELSRFKSTKEVNAAIHQI 704 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 G I+IGTH L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPI Sbjct: 705 NEGTVDIVIGTHKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPI 764 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICP 490 PRTL + G D S I P R IKT + D VI E + L G + Y++ Sbjct: 765 PRTLGMALEGLRDFSVIATAPQKRLAIKTFVR--REEDSVIREAMLRELKRGGQVYFLHN 822 Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550 ++E + N R ++E + IA+ HG+M + + E VM F +L+ TT+ Sbjct: 823 EVETIE--NRRQMLEALVP-----EARIAVAHGQMHERELERVMRDFVAQRANVLLCTTI 875 Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL 608 IE GIDV A+ I+I A+ FGLAQLHQLRGRVGR + LL H P L+K + RL Sbjct: 876 IETGIDVPSANTILIHRADKFGLAQLHQLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRRL 935 Query: 609 SVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665 ++ E+ GF +A DL+ R GE+LG KQSG + Q L+ +L A K K Sbjct: 936 EAIQQMEELGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKE 993 Query: 666 ILTQDPDLTSVRGQSIRILLY 686 ++PDLT+ + I L+ Sbjct: 994 --GKEPDLTAPLAATTEINLH 1012 >gi|299066652|emb|CBJ37845.1| transcription-repair ATP-dependent coupling factor, helicase [Ralstonia solanacearum CMR15] Length = 1143 Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 147/431 (34%), Positives = 222/431 (51%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W R+ A ++ L R+ ++ P+ + + F T Q Sbjct: 550 QWDKAKRKAAQQIRDTAAELLNLYARRALRQGFAFPLAPNDY--ETFAESFGFDETPDQA 607 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q ++AP +LA+QHY Sbjct: 608 AAITAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAMLAPTTLLAEQHY 667 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + + + I+ + A+E I G I+IGTH L +++ +L LV Sbjct: 668 QTLADRFADWPVRIAEISRFKNKKEIDAAIEAINAGTIDIVIGTHKLLSPDVKFNRLGLV 727 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+HRFGV+Q+ L +L +TATPIPRTL + G D S I P R I Sbjct: 728 IIDEEHRFGVRQKETLKTLRAEVDILTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 787 Query: 459 KTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 KT + R ++ + R ++ L G + Y++ ++E E K + ++V Sbjct: 788 KTFV---RREEDGVLREAILRELKRGGQVYFLHNEVETIENKRAKLEALVPE-------- 836 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + +A+ HG+M + + E VM F +L+ TT+IE GIDV A+ I+I A+ FGLA Sbjct: 837 -ARVAVAHGQMHERELERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRADKFGLA 895 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629 QLHQLRGRVGR + LL H L+K + RL ++ E+ GF +A DL+ R Sbjct: 896 QLHQLRGRVGRSHHQAYAYLLVHDADGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRG 955 Query: 630 EGEILGIKQSG 640 GE+LG KQSG Sbjct: 956 AGEVLGDKQSG 966 >gi|145589112|ref|YP_001155709.1| transcription-repair coupling factor [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047518|gb|ABP34145.1| transcription-repair coupling factor [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 1180 Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 148/378 (39%), Positives = 206/378 (54%), Gaps = 19/378 (5%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q I+AP Sbjct: 622 FEETPDQANAIAAVIGDMTSGTPMDRLVCGDVGFGKTEVALRASFVAVMGGKQVAILAPT 681 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA+QH K + + + ++ ALE IA G A IIIGTH L Sbjct: 682 TLLAEQHVATWKDRFADWPVRIVELSRFKTTKEINAALEAIAKGDADIIIGTHKLLSKET 741 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 Q+ L LVIVDE+HRFGV+Q+ L +L +TATPIPRTL + G ++S I Sbjct: 742 QFANLGLVIVDEEHRFGVRQKDALKVLRAEVDILTLTATPIPRTLGMAMEGLRELSIIAT 801 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R IKT + R + + R V+ + G + Y++ ++E ++ R + Sbjct: 802 APQKRLAIKTF---VRREGDGVIREAVLREIKRGGQVYFLHNEVE--------TIQNRKH 850 Query: 509 SLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 +L E + I++ HG+M + + ESVM F +L+ TT+IE GIDV A+ II+ Sbjct: 851 ALQELIPEARISVAHGQMHERELESVMREFVTQRTNILLCTTIIETGIDVPTANTIIMHR 910 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622 A+ FGLAQLHQLRGRVGR + LL P LSK + RL+ ++ E+ GF +A Sbjct: 911 ADKFGLAQLHQLRGRVGRSHHQAYAYLLVPDPEALSKQAQLRLNAIQAMEELGSGFYLAM 970 Query: 623 EDLKQRKEGEILGIKQSG 640 DL+ R GE+LG KQSG Sbjct: 971 HDLEIRGAGEVLGDKQSG 988 >gi|88800098|ref|ZP_01115668.1| transcription-repair coupling protein Mfd [Reinekea sp. MED297] gi|88777224|gb|EAR08429.1| transcription-repair coupling protein Mfd [Reinekea sp. MED297] Length = 1151 Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 140/416 (33%), Positives = 223/416 (53%), Gaps = 25/416 (6%) Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 A ++ + R++ + G P + Q+ F T Q AI+ +L D+ Q M Sbjct: 570 AAELLDIYARREAQSGFGFPFD--STEYQQFAAGFGFEETDDQAQAIRKVLNDLRQPRPM 627 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R++ GDVG GKT VAL A A +G Q ++ P +LAQQH+E + + I +E+ Sbjct: 628 DRLICGDVGFGKTEVALRAAFIAASSGKQVAVLVPTTLLAQQHFENFQDRFADWPINIEV 687 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 ++ + ++ +A G+ I++GTH L Q S+++ L L+IVDE+HRFGV Q+ + Sbjct: 688 LSRFNSSKKTQSIIDGLADGKVDIVVGTHKLLQKSVKFKDLGLLIVDEEHRFGVGQKETI 747 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 +L +TATPIPRT+ ++ G D+S I PA R +KT + + D +I+ Sbjct: 748 KALRANVDILALTATPIPRTMNMSMSGVRDLSIIATPPAKRLSVKTFV--REKDDALIK- 804 Query: 475 LKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDID 529 + VL E G + Y++ ++ S +E+ + + + + HG+M + Sbjct: 805 -EAVLREILRGGQVYYLHNEV---------STIEKTQAFLTELIPEARVVVAHGQMPERQ 854 Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589 E +M F + +L+ TT+IE GIDV A+ I+IE A+ FGLAQLHQLRGRVGR Sbjct: 855 LERIMSDFYHKRFNVLLCTTIIETGIDVPSANTIVIERADKFGLAQLHQLRGRVGRSHHQ 914 Query: 590 SSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 + LL L+K++ RL + +++ GF +A DL+ R GE+LG +QSG Sbjct: 915 AYAYLLTPGWKSLTKDAQKRLEAIADSQHLGAGFTLATHDLEIRGAGELLGDEQSG 970 >gi|54296975|ref|YP_123344.1| transcription-repair coupling factor [Legionella pneumophila str. Paris] gi|53750760|emb|CAH12167.1| Transcription-repair coupling factor [Legionella pneumophila str. Paris] Length = 1153 Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 144/384 (37%), Positives = 202/384 (52%), Gaps = 17/384 (4%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K PF+ T Q AI+ I++DM M R++ GDVG GKT VA+ A AV+ G Q Sbjct: 595 KFASGFPFTETPDQLQAIEQIIRDMQSPRPMDRLICGDVGFGKTEVAMRAAFVAVQNGKQ 654 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 I+AP +LA QH+E + + +E+++ L + G+ I+IGTH Sbjct: 655 VCILAPTTLLAGQHFESFRDRFAEFPVNIELLSRFRSNKESEAVLAALQSGKVDIVIGTH 714 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443 LFQ++I + L L+I+DE+HRFGV+Q+ + T +L MTATPIPRTL + G Sbjct: 715 KLFQNNISFKNLGLLIIDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLNMAMAGIR 774 Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503 DIS I PA R IKT N + L+ +L G+ Y N Sbjct: 775 DISLIATPPAKRLAIKTFWQEKNDLTIREAILREILRGGQVFYL----------HNNVQT 824 Query: 504 VERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 +ER E + I HG+M + E +M F + +L+ TT+IE GID+ A+ Sbjct: 825 IERVCQDLEALVPEAKIQSAHGQMRERQLERIMSDFYHHRFNVLVCTTIIETGIDIPTAN 884 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED--- 616 III+ A+ FGLAQLHQLRGRVGR + LL L+ ++ RL + + ED Sbjct: 885 TIIIDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPNEKLLTPDAVKRLEAIVSLEDLGA 944 Query: 617 GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG +QSG Sbjct: 945 GFTLATHDLEIRGAGELLGEEQSG 968 >gi|290889683|ref|ZP_06552772.1| hypothetical protein AWRIB429_0162 [Oenococcus oeni AWRIB429] gi|290480680|gb|EFD89315.1| hypothetical protein AWRIB429_0162 [Oenococcus oeni AWRIB429] Length = 1188 Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 140/434 (32%), Positives = 236/434 (54%), Gaps = 26/434 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W R A E +A ++ L +++ E+G +V+ + Q+ + T Q Sbjct: 583 DWAKTKRRVTAKVEDIADELIALYSKRE--GEVGYAFSVDDQRQQEFDDGFAYPETVDQL 640 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +IK+I DM K M R+L GDVG GKT VA A A+E Q + P IL+QQHY Sbjct: 641 RSIKEIKSDMENKKPMDRLLVGDVGFGKTEVAFRAAFKAIEDHKQVAFLTPTTILSQQHY 700 Query: 339 EF-IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 + I++++ +I + +++ ++ ++++ Q ++IGTH L + + L L Sbjct: 701 QTAIERFSDFPEIKIAMLSRFNTAGQNKEVIKKLKAHQLDMVIGTHRLLSKDVAFDDLGL 760 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +I+DE+ RFGV+ + K+ Q VL +TATPIPRTL + +G D+S + PA R P Sbjct: 761 LIIDEEQRFGVKHKEKIKQLRANVDVLTLTATPIPRTLNMALVGARDLSVLETPPANRFP 820 Query: 458 IKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEH 513 I+T ++ N I + IE+ LS G + +++ +++ E+ + +V N Sbjct: 821 IQTYVLEENWPVIADAIEK---ELSRGGQTFFLHNRVQDIERTVGEIQRIVPDAN----- 872 Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 + IHG+M++ E V+ F NG +L+ TT+IE G+D+ +A+ +I+EN+E FGL Sbjct: 873 ----VGYIHGQMNETQLEDVLMDFLNGIYDVLVTTTIIETGVDIPNANTLIVENSERFGL 928 Query: 574 AQLHQLRGRVGRGEEISSCILLY---HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQ 627 +QL+QLRGR+GR ++ Y P ++++ RL +++ TE GF +A DL Sbjct: 929 SQLYQLRGRIGRSNRLAYAYFTYPGDRQP-TEDAQKRLEAIRDFTELGSGFKLAMRDLSI 987 Query: 628 RKEGEILGIKQSGM 641 R G++LG +Q G Sbjct: 988 RGAGDLLGKQQHGF 1001 >gi|221142305|ref|ZP_03566798.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus str. JKD6009] gi|304380521|ref|ZP_07363197.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|269940074|emb|CBI48450.1| putative transcription-repair coupling factor [Staphylococcus aureus subsp. aureus TW20] gi|302750394|gb|ADL64571.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340925|gb|EFM06849.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|329313222|gb|AEB87635.1| Transcription-repair coupling factor [Staphylococcus aureus subsp. aureus T0131] Length = 1168 Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 211/382 (55%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ + +++++ ++ E + G I++GTH L Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + ++ +++ S+ E Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVLYLYNKVQ--------SIYE 842 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++IA+ HG+M++ D E M SF N +L+ TT+IE G+DV +A+ +I Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE+A+ FGL+QL+QLRGRVGR I L HP L++ + RL +K TE GF Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 IA DL R G +LG +Q G Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983 >gi|90408104|ref|ZP_01216274.1| transcription-repair coupling factor [Psychromonas sp. CNPT3] gi|90310790|gb|EAS38905.1| transcription-repair coupling factor [Psychromonas sp. CNPT3] Length = 1158 Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 210/379 (55%), Gaps = 19/379 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T Q +AI +L DM + M R++ GDVG GKT VA+ A AV+ Q I+ P Sbjct: 608 PFEETPDQSNAINAVLNDMCSRQPMDRLICGDVGFGKTEVAMRATFLAVDNTRQVAILVP 667 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHYE K + + VE+++ +++ L + G+ I+IGTH L + Sbjct: 668 TTLLAQQHYENFKDRFASWPVRVEVLSRFKSAKEQKQILLELQEGKIDILIGTHKLLSST 727 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + Y L L+I+DE+HRFGV+Q+ K+ +L +TATPIPRTL ++ G D+S I Sbjct: 728 VVYADLGLLIIDEEHRFGVRQKEKIKALRAQIDILTLTATPIPRTLNMSMNGMRDLSIIA 787 Query: 450 EKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVER 506 P+ R +KT + + D +I + + + G + Y++ +E K ++ ++V Sbjct: 788 TPPSKRLAVKTFV--EQKTDALISDAITREIMRGGQVYFLHNNVETINKAAADIEALVP- 844 Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 ++ +++ HG+M++ E +M F + +L+ TT+IE GID+ A+ III Sbjct: 845 --------SAKVSVAHGQMNEHQLERIMSDFYHQRQNVLVCTTIIETGIDIPSANTIIIN 896 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRL---SVLKNTEDGFLIA 621 A+H GLAQLHQLRGRVGR + LL +SK++ RL S L GF +A Sbjct: 897 RADHLGLAQLHQLRGRVGRSHHQAYAYLLTPTRKLMSKDAKKRLDAISSLNTLGAGFTLA 956 Query: 622 EEDLKQRKEGEILGIKQSG 640 DL+ R GE+LG +QSG Sbjct: 957 THDLEIRGAGELLGDEQSG 975 >gi|167816296|ref|ZP_02447976.1| transcription-repair coupling factor [Burkholderia pseudomallei 91] Length = 1175 Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 158/433 (36%), Positives = 229/433 (52%), Gaps = 27/433 (6%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q Sbjct: 613 KFADSFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 672 Query: 324 AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 +++P +LA+QH + F ++ IVE+ + A+ +I G I+IGT Sbjct: 673 VALLSPTTLLAEQHTQTFADRFADWPVRIVELSRFKTAK-EVNAAIAQINEGSVDIVIGT 731 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G Sbjct: 732 HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 791 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498 D S I P R IKT + R +E + R ++ L G + Y++ ++E E +++ Sbjct: 792 RDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKA 848 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + I I HG+M + + E VM F +L+ TT+IE GIDV Sbjct: 849 MLEELVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 899 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616 A+ II+ A+ FGLAQLHQLRGRVGR + LL H P L+K + RL ++ E+ Sbjct: 900 SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEE 959 Query: 617 ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 GF +A DL+ R GE+LG KQSG + Q L+ +L A K K+ ++PDL Sbjct: 960 LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDL 1015 Query: 674 TSVRGQSIRILLY 686 T+ + I L+ Sbjct: 1016 TAPLAATTEINLH 1028 >gi|162450905|ref|YP_001613272.1| transcription-repair coupling factor [Sorangium cellulosum 'So ce 56'] gi|161161487|emb|CAN92792.1| transcription-repair coupling factor [Sorangium cellulosum 'So ce 56'] Length = 1271 Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 136/381 (35%), Positives = 208/381 (54%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q AI ++ D+ M R++ GDVG GKT VA+ A A AG Q ++ Sbjct: 718 TFPFDETPDQARAITEVTADLESGRPMDRLVCGDVGFGKTEVAIRAAFRAANAGRQVAVL 777 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY + + I V +++ + + + + G ++IGTH L Sbjct: 778 CPTTVLAQQHYLSFRSRMASYPIEVRVMSRFQSKQEQDEVSRGLRDGSVDVVIGTHRLLS 837 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + + +L L++VDE+ RFGV + ++ T VL ++ATPIPRTL + G D+S Sbjct: 838 KDVHFKRLGLLVVDEEQRFGVTHKERIKALKTNVDVLTLSATPIPRTLQMAVSGLRDMSI 897 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVE 505 IT P R+ I+TV + R DE + R V+ L G + +++ ++E + E Sbjct: 898 ITTPPVDRRAIRTV---VTRHDEAVLREAVLRELGRGGQVFYVYNRVE--------GLYE 946 Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 R L E S+ I + HG+MS+ E M F G +L AT +IE G+D+ A+ I+ Sbjct: 947 RAARLAELVPSARICVAHGQMSEQSLEQAMLDFVEGRYDVLCATAIIESGLDIPRANTIL 1006 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVL-KNTE--DGFL 619 I+ A+ FGL+QL+QLRGRVGR +E + C L+ PP ++ + R+ L ++TE GF Sbjct: 1007 IDRADMFGLSQLYQLRGRVGRSKERAYCYLIVPPPNAMTDEARARIEALERHTELGSGFQ 1066 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 IA DL+ R G++LG +QSG Sbjct: 1067 IASLDLELRGSGDLLGAEQSG 1087 >gi|227832736|ref|YP_002834443.1| transcription-repair coupling factor [Corynebacterium aurimucosum ATCC 700975] gi|262182774|ref|ZP_06042195.1| transcription-repair coupling factor [Corynebacterium aurimucosum ATCC 700975] gi|227453752|gb|ACP32505.1| transcription-repair coupling factor [Corynebacterium aurimucosum ATCC 700975] Length = 1212 Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 157/523 (30%), Positives = 259/523 (49%), Gaps = 29/523 (5%) Query: 131 KLKNRI---IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE-ALSRL--PV 184 K +NR+ + Y+ H + + L A ++ +G + I++E A S+ P Sbjct: 497 KRRNRVDPLALKQGDYVVHETHGIGKFLKMAERTVQSGDETSRREYIVLEYAASKRGQPA 556 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 W+ D L S + EA + K +W + ++ A +AG++ L + Sbjct: 557 DQLWVPMDSLDLLSKYTGGEAPTL----SKMGGSDWKNTKKKARAAVREIAGELVELYAK 612 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 +Q G + ++ N PF T+ Q AI + +DM M R++ GDVG Sbjct: 613 RQAAP--GHQFGPDTPWQAEMEDNFPFVETEDQMLAIDAVKEDMESTVPMDRVVVGDVGY 670 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKT VA+ A AV+ G Q ++ P +LAQQH + ++ Q + +E+++ Sbjct: 671 GKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHADTFRERMQGFPVDIEVLSRFTSAKES 730 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424 ++ L +A G I+IGTH L Q +Q+ L L++VDE+ RFGV+ + + + VL Sbjct: 731 KEILAGLADGSVDIVIGTHRLLQTGVQWKNLGLIVVDEEQRFGVEHKEHIKALKASVDVL 790 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 M+ATPIPRTL ++ G ++S I P R P+ T + +V ++ L + Sbjct: 791 TMSATPIPRTLEMSMAGIREMSTILTPPEDRHPVLTYVGAYED-KQVAAAIRRELLRDGQ 849 Query: 485 AYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542 ++I ++ EKK R +V + I + HG+M++ E + F + Sbjct: 850 VFFIHNKVADIEKKARELRDLVPE---------ARIVVAHGQMNEDVLERTVQGFWDREF 900 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPL 600 +L+ TT++E G+D+ +A+ +I+ENA H GL+QLHQLRGRVGR E LY L Sbjct: 901 DVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGATL 960 Query: 601 SKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 ++ SY RL+ + D G +A +DL+ R G +LG +QSG Sbjct: 961 TETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSG 1003 >gi|125534627|gb|EAY81175.1| hypothetical protein OsI_36354 [Oryza sativa Indica Group] Length = 640 Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 136/423 (32%), Positives = 236/423 (55%), Gaps = 23/423 (5%) Query: 227 RLAYDELLAGQIALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285 +LA +++ + L L R +Q + P+ ++ A+ P+ PT Q A D+ Sbjct: 45 KLAVQKMVVNLMELYLQRMRQKRPPYPKPVGMDQFTAE-----FPYEPTPDQNQAFIDVD 99 Query: 286 QDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI-KK 343 +D++++ M R++ GDVG GKT VA+ A+ + AG QA+++AP ILA+QHY+ + ++ Sbjct: 100 KDLTERETPMDRLICGDVGFGKTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSER 159 Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403 ++ I V + +G + + + + +I +G HII+GTHA+ + + Y L L++VDE+ Sbjct: 160 FSNYPDIKVAMFSGAQTKEEKDELITKIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEE 219 Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463 +FGVQQ+ K+ + VL ++ATPIPRTL L G D S ++ P R ++T + Sbjct: 220 QKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVS 279 Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIH 522 ++ + + +K L+ G + +++ P+I +++ + L + +A+ H Sbjct: 280 GFSK-ERALSAIKFELARGGQVFYVVPRI--------KAIDDVLQFLKDSLPDVPMAVAH 330 Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582 G+ + + M+ F G K+L+ T +IE GID+ +A+ ++++ AE FGLAQL+QLRGR Sbjct: 331 GKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGR 390 Query: 583 VGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIK 637 VGR L Y LSK + RL ++ D GF +AE+D+ R G + G + Sbjct: 391 VGRSGTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQ 450 Query: 638 QSG 640 QSG Sbjct: 451 QSG 453 >gi|89889977|ref|ZP_01201488.1| transcription-repair coupling factor [Flavobacteria bacterium BBFL7] gi|89518250|gb|EAS20906.1| transcription-repair coupling factor [Flavobacteria bacterium BBFL7] Length = 1112 Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 148/445 (33%), Positives = 239/445 (53%), Gaps = 20/445 (4%) Query: 237 QIALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 QIA L++ K+ G +G + ++ + + T Q +A D+ DM M Sbjct: 512 QIAFDLIQLYAKRRAKKGFQFEPDGYLQNELEASFIYEDTPDQSAATADVKADMESDRPM 571 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R++ GDVG GKT VA+ A A +G Q ++ P ILA QH + K+ N + V+ Sbjct: 572 DRLVCGDVGFGKTEVAIRAAFKAAVSGKQVAVLVPTTILAFQHAKTFKERLGNLPVTVDY 631 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 + R+ LE +A+GQ I+IGTH L SIQ+ L L+I+DE+ +FGV + KL Sbjct: 632 LNRFRTAKERKGVLEGLANGQVDIVIGTHQLVSKSIQFKDLGLLIIDEEQKFGVGVKDKL 691 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 L +TATPIPRTL + + D+S I P R PI++ +I + + + + Sbjct: 692 KTLKENIDTLTLTATPIPRTLQFSLMAARDLSVIKTAPPNRHPIESRVIRFSE-ETIRDA 750 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534 + +S G + +++ +IE KE +++R S+ + + + I HG+M E +M Sbjct: 751 VSYEISRGGQVFFVHNRIENIKE--VAGMIQR--SVPD---ARVGIGHGQMDGKKLEELM 803 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 SF NG +L+ATT+IE G+DV +A+ I I NA +FGL+ LHQ+RGRVGR + + C Sbjct: 804 LSFMNGDFDVLVATTIIESGLDVPNANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYF 863 Query: 595 LYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK---FL 645 + PP ++ ++ R+ ++ + GF IA +DL+ R G+ILG +QSG F Sbjct: 864 I-TPPYDMMTDDARKRIQAVETFSELGSGFNIAMKDLEIRGAGDILGGEQSGFMNEIGFD 922 Query: 646 IAQPELHDSLLEIARKDAKHILTQD 670 Q L++++ E+ + K + +D Sbjct: 923 TYQKILNEAIEELKENEFKDLYEED 947 >gi|139438721|ref|ZP_01772205.1| Hypothetical protein COLAER_01207 [Collinsella aerofaciens ATCC 25986] gi|133775801|gb|EBA39621.1| Hypothetical protein COLAER_01207 [Collinsella aerofaciens ATCC 25986] Length = 1210 Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 142/430 (33%), Positives = 227/430 (52%), Gaps = 21/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +WT + + LA + L R+ I P + +I ++ + P+ T+ Q Sbjct: 604 DWTRATNKARKNAKKLAFDLVDLYTRRSSITGIACPPDTPEQI--EMEESFPYDETRDQL 661 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 AI DI DM M R+L GDVG GKT VAL A V++G Q +++ P ILAQQHY Sbjct: 662 EAIADIKADMEAPKPMDRLLCGDVGFGKTEVALRAAFKCVDSGRQVMVLCPTTILAQQHY 721 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + + VE+++ A +++AL+ A G ++IGTH L + L +V Sbjct: 722 ETFFERFAPFGLEVEVLSRFRTPAQQKRALKAFAEGTIDVLIGTHRLLSADVNPKNLGMV 781 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGVQ + +L VL ++ATPIPRT+ + + G D+S IT P GR+P Sbjct: 782 IIDEEQRFGVQHKEQLKNLREQIDVLTLSATPIPRTMQMATSGVRDMSLITTPPTGRRP- 840 Query: 459 KTVIIPINRIDE--VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 VI+ + D V +++ + G + Y++ ++ +++ + +HE Sbjct: 841 --VIVHVGEYDPDVVSAAIRLEVGRGGQVYYVSNRV--------KTIDDAVARVHEAAPE 890 Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + + + HG+MS + E VM F +LIATT++E GID A+ +IIE+++ GLAQ Sbjct: 891 ARVGVAHGKMSPREVEDVMIEFATKKIDVLIATTIVESGIDNATANTLIIEDSQRLGLAQ 950 Query: 576 LHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630 L+QL+GRVGR + ++ PL++ + RL+ L +D G IA DL+ R Sbjct: 951 LYQLKGRVGRSATQAYAYFMFPGELPLTEEATARLTALSEFQDLGSGMRIAMRDLEIRGA 1010 Query: 631 GEILGIKQSG 640 G ++G +Q G Sbjct: 1011 GSLMGAEQHG 1020 >gi|257783934|ref|YP_003179151.1| transcription-repair coupling factor [Atopobium parvulum DSM 20469] gi|257472441|gb|ACV50560.1| transcription-repair coupling factor [Atopobium parvulum DSM 20469] Length = 1147 Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 137/394 (34%), Positives = 214/394 (54%), Gaps = 13/394 (3%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G +++ +++ + P+ T QESA+ DI DM + M R+L GDVG GKT VAL Sbjct: 587 GYAFSLDTPAQEEMESSFPYQLTPDQESAVADIKLDMEARKPMDRLLCGDVGFGKTEVAL 646 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A A + Q +I+ P ILAQQHYE + V +++ + A +RKALE Sbjct: 647 RAAFKACQDARQVMILCPTTILAQQHYETFFSRFAPFDLKVSVLSRFVTPAQQRKALEGF 706 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 A G +++GTH L + + L LVI+DE+ RFGVQ + +L VL ++ATPI Sbjct: 707 ADGTIDVLVGTHRLLSADVNPHDLGLVIIDEEQRFGVQHKEQLKNMREQVDVLTLSATPI 766 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491 PRT+ + G D+S I P GRKP++ + N D V ++ L + Y++ + Sbjct: 767 PRTMQMAMSGVRDMSLILTPPPGRKPVQVTVGEYN-PDLVSAAIRSELEREGQVYYVSNR 825 Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551 + E+ R VE + + + HG+MS + E+VM +F+ +L+ATT+I Sbjct: 826 VTTIDEAVAR--VEEAAP-----EARVGVAHGQMSAREVENVMLAFQEHEIDVLVATTII 878 Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLS 609 E GID + +IIE+++ GLAQL+QL+GRVGRG + + ++ PL++ + RL+ Sbjct: 879 ESGIDNSHTNTLIIEDSQRLGLAQLYQLKGRVGRGRQQAYAYFMFPAELPLTEEATERLT 938 Query: 610 VLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 + +D G IA DL+ R G ++G +Q G Sbjct: 939 AINEFQDLGSGMRIAMRDLEIRGAGSLMGAEQHG 972 >gi|299782816|gb|ADJ40814.1| Transcription-repair coupling factor [Lactobacillus fermentum CECT 5716] Length = 1113 Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 140/431 (32%), Positives = 231/431 (53%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R A E +A + L +++ +K P + + +K P++ TK Q Sbjct: 501 EWAKTKRRVAAKIEDIADDLVDLYAKRETEKGFAFPKD--DYLQEKFDDEFPYAETKDQL 558 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I++I DM + M R+L GDVG GKT VAL A+ AV G Q + P ILAQQHY Sbjct: 559 QSIQEIKADMERPRPMDRLLVGDVGYGKTEVALRAIFKAVAGGKQVAFLVPTTILAQQHY 618 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALER-IAHGQAHIIIGTHALFQDSIQYYKLIL 397 + +K + + + +++ A K +R + +G+ I++GTH + +Q+ L L Sbjct: 619 DTMKARFEGFPVTIALMS-RFKTAKELKETDRGLLNGEIDIVVGTHRILSKDVQFKDLGL 677 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +IVDE+ RFGV+ + +L Q VL +TATPIPRTL ++ +G D+S + P GR P Sbjct: 678 LIVDEEQRFGVKHKERLKQLKANVDVLTLTATPIPRTLHMSMMGVRDLSVLETPPTGRYP 737 Query: 458 IKTVIIPINRI---DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 I+T ++ N D ++ ++ G + Y++ ++ + VV + L Sbjct: 738 IQTYVLEQNGAVIRDGILREMQ----RGGQVYYLHNRVH-----DIERVVAQLAELVPE- 787 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + I IHG+MS+ + E V+ F G +L+ T++IE G+D+ + + + +E+A+ GLA Sbjct: 788 -ARIGYIHGQMSENELEGVLYDFIRGEYDVLVTTSIIETGVDIANVNTLFVEDADRLGLA 846 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 QL+Q+RGR+GR ++ +Y L++ RL+ +++ TE GF IA DL R Sbjct: 847 QLYQIRGRIGRSNRVAYAYFMYQENKVLTEQGEKRLAAIRDFTELGSGFKIAMRDLSIRG 906 Query: 630 EGEILGIKQSG 640 G +LG +Q G Sbjct: 907 AGNLLGKQQHG 917 >gi|293571071|ref|ZP_06682112.1| transcription-repair coupling factor [Enterococcus faecium E980] gi|291608854|gb|EFF38135.1| transcription-repair coupling factor [Enterococcus faecium E980] Length = 1173 Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 141/431 (32%), Positives = 232/431 (53%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + L ++ +K G + ++ P+S T Q Sbjct: 570 EWTKTKRKVSSKIEDIADDLIKLYAARESEK--GYAFGPDDAYQKEFENAFPYSETDDQL 627 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I +DM ++ M R+L GDVG GKT VAL A A++ Q + P ILAQQHY Sbjct: 628 RSAAEIKRDMEKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 687 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + + + + + +++ + +++ +E++ GQ I++GTH + I++ L L+ Sbjct: 688 ETMLERFEGFPVNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGTHRILSKDIEFSDLGLL 747 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q VL +TATPIPRTL ++ LG D+S I PA R PI Sbjct: 748 IIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPI 807 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E I R + G + +++ ++E E+K + +V Sbjct: 808 QTYVMEKNPGAIREAIHR---EMGRGGQVFYLYNRVETIEQKVEEIQELVPE-------- 856 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + I HG+M++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 857 -ARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLS 915 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 916 TLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRG 975 Query: 630 EGEILGIKQSG 640 G +LG +Q G Sbjct: 976 AGNLLGAQQHG 986 >gi|83952089|ref|ZP_00960821.1| transcription-repair coupling factor [Roseovarius nubinhibens ISM] gi|83837095|gb|EAP76392.1| transcription-repair coupling factor [Roseovarius nubinhibens ISM] Length = 1153 Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 137/398 (34%), Positives = 222/398 (55%), Gaps = 19/398 (4%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 P+ T Q AI D+++D+ M R++ GDVG GKT VA+ A A +G Q ++A Sbjct: 593 FPYQETDDQLGAISDVMEDLGSGRPMDRLICGDVGFGKTEVAMRAAFVAAMSGQQVAVIA 652 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LA+QHY+ + + + V ++ + K E +A G+ I++GTHAL Sbjct: 653 PTTLLARQHYQSFAERFRGFPVNVAPLSRFVSAGEATKTREGLARGKVDIVVGTHALLAK 712 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 S+++ L L+I+DE+ RFGV + +L Q + HVL ++ATPIPRTL L+ G D+S I Sbjct: 713 SVRFENLGLLIIDEEQRFGVAHKERLKQMRSDVHVLTLSATPIPRTLQLSLSGVRDLSII 772 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF- 507 P R I+T + +R+ V E L G +++++ P++ + E +E F Sbjct: 773 GTPPVDRLSIRTYVSEFDRV-TVREALLREHYRGGQSFYVVPRVSDLPE------IEEFL 825 Query: 508 -NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 N + E + A+ HG+M+ + ++ M++F +G +L+ATT++E G+D+ A+ +I+ Sbjct: 826 RNEVPE---VTFAVAHGQMAAGELDARMNAFYDGKYDVLLATTIVESGLDIPRANTMIVH 882 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP-----PLSKNSYTRLSVLKNTEDGFLIA 621 A+ FGLAQL+Q+RGRVGR + + L P P ++ LS L GF +A Sbjct: 883 RADMFGLAQLYQIRGRVGRSKLRAYAYLTTKPRVKLTPAAEKRLRVLSSLDTLGAGFTLA 942 Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 +DL R G +LG +QSG + + EL+ S+LE A Sbjct: 943 SQDLDIRGAGNLLGEEQSGQMRDV--GYELYQSMLEEA 978 >gi|56961865|ref|YP_173587.1| transcription-repair coupling factor [Bacillus clausii KSM-K16] gi|56908099|dbj|BAD62626.1| transcription-repair coupling factor [Bacillus clausii KSM-K16] Length = 1180 Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 139/397 (35%), Positives = 219/397 (55%), Gaps = 17/397 (4%) Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310 +G + +G + + P+ T+ Q AIK+I +DM ++ M R+L GDVG GKT VA Sbjct: 603 VGHRFSSDGPEQAEFESSFPYQETEDQLRAIKEIKEDMEKQRPMDRLLCGDVGYGKTEVA 662 Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370 + A A+ G Q I+ P ILAQQH+E I + I V +++ + + + L+ Sbjct: 663 IRAAFKAIMDGKQVAILVPTTILAQQHFETISDRFSDFPITVGVLSRFRSRKEQTEVLKG 722 Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430 + G +++GTH L +Q+ L L+IVDE+ RFGV + K+ + VL +TATP Sbjct: 723 LKAGSVDLVVGTHRLLSKDVQFRDLGLLIVDEEQRFGVTHKEKIKRMKANIDVLTLTATP 782 Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWI 488 IPRTL ++ LG D+S I P R P++T ++ N + E IER LS G + Y + Sbjct: 783 IPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEFNPAIVREAIER---ELSRGGQVYVL 839 Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548 ++E + + E+ ++L S A HG+M++ + ES++ F G +L+ T Sbjct: 840 YNRVE-----DIERMTEQISTLVPDARVSYA--HGQMNERELESIILDFLEGESDVLVTT 892 Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYT 606 T+IE G+D+ + + +I+ NA+ GL+QL+Q+RGRVGR ++ Y P L++ + Sbjct: 893 TIIETGVDIPNVNTLIVCNADKMGLSQLYQIRGRVGRSNRVAYSYFTYQPDKVLTEVAEK 952 Query: 607 RLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640 RL +K TE GF IA DL R G +LG +Q G Sbjct: 953 RLQAIKEFTELGSGFKIAMRDLTIRGAGNLLGSQQHG 989 >gi|184154691|ref|YP_001843031.1| transcription-repair coupling factor [Lactobacillus fermentum IFO 3956] gi|183226035|dbj|BAG26551.1| transcription-repair coupling factor [Lactobacillus fermentum IFO 3956] Length = 1180 Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 140/431 (32%), Positives = 231/431 (53%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R A E +A + L +++ +K P + + +K P++ TK Q Sbjct: 568 EWAKTKRRVAAKIEDIADDLVDLYAKRETEKGFAFPKD--DYLQEKFDDEFPYAETKDQL 625 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I++I DM + M R+L GDVG GKT VAL A+ AV G Q + P ILAQQHY Sbjct: 626 QSIQEIKADMERPRPMDRLLVGDVGYGKTEVALRAIFKAVAGGKQVAFLVPTTILAQQHY 685 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALER-IAHGQAHIIIGTHALFQDSIQYYKLIL 397 + +K + + + +++ A K +R + +G+ I++GTH + +Q+ L L Sbjct: 686 DTMKARFEGFPVTIALMS-RFKTAKELKETDRGLLNGEIDIVVGTHRILSKDVQFKDLGL 744 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +IVDE+ RFGV+ + +L Q VL +TATPIPRTL ++ +G D+S + P GR P Sbjct: 745 LIVDEEQRFGVKHKERLKQLKANVDVLTLTATPIPRTLHMSMMGVRDLSVLETPPTGRYP 804 Query: 458 IKTVIIPINRI---DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 I+T ++ N D ++ ++ G + Y++ ++ + VV + L Sbjct: 805 IQTYVLEQNGAVIRDGILREMQ----RGGQVYYLHNRVH-----DIERVVAQLAELVPE- 854 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + I IHG+MS+ + E V+ F G +L+ T++IE G+D+ + + + +E+A+ GLA Sbjct: 855 -ARIGYIHGQMSENELEGVLYDFIRGEYDVLVTTSIIETGVDIANVNTLFVEDADRLGLA 913 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 QL+Q+RGR+GR ++ +Y L++ RL+ +++ TE GF IA DL R Sbjct: 914 QLYQIRGRIGRSNRVAYAYFMYQENKVLTEQGEKRLAAIRDFTELGSGFKIAMRDLSIRG 973 Query: 630 EGEILGIKQSG 640 G +LG +Q G Sbjct: 974 AGNLLGKQQHG 984 >gi|16077123|ref|NP_387936.1| transcription-repair coupling factor [Bacillus subtilis subsp. subtilis str. 168] gi|221307865|ref|ZP_03589712.1| transcription-repair coupling factor [Bacillus subtilis subsp. subtilis str. 168] gi|221312187|ref|ZP_03593992.1| transcription-repair coupling factor [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317120|ref|ZP_03598414.1| transcription-repair coupling factor [Bacillus subtilis subsp. subtilis str. JH642] gi|221321383|ref|ZP_03602677.1| transcription-repair coupling factor [Bacillus subtilis subsp. subtilis str. SMY] gi|585481|sp|P37474|MFD_BACSU RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|467444|dbj|BAA05290.1| transcription-repair coupling factor [Bacillus subtilis] gi|2632322|emb|CAB11831.1| transcription-repair coupling factor [Bacillus subtilis subsp. subtilis str. 168] Length = 1177 Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 137/380 (36%), Positives = 214/380 (56%), Gaps = 21/380 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q +I +I +DM ++ M R+L GDVG GKT VA+ A A+ G Q ++ P Sbjct: 621 PYQETEDQLRSIHEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIGDGKQVALLVP 680 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHYE IK+ Q+ I + +++ + + ++ + +G I+IGTH L Sbjct: 681 TTILAQQHYETIKERFQDYPINIGLLSRFRTRKEANETIKGLKNGTVDIVIGTHRLLSKD 740 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG D+S I Sbjct: 741 VVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGVRDLSVIE 800 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 P R P++T ++ N + E IER L+ G + Y++ ++E E+K +V Sbjct: 801 TPPENRFPVQTYVVEYNGALVREAIER---ELARGGQVYFLYNRVEDIERKADEISMLVP 857 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + +A HG+M++ + E+VM SF G +L++TT+IE G+D+ + + +I+ Sbjct: 858 ---------DAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIV 908 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620 +A+ GL+QL+QLRGRVGR ++ Y L++ + RL +K TE GF I Sbjct: 909 FDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKI 968 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL R G +LG +Q G Sbjct: 969 AMRDLTIRGAGNLLGAQQHG 988 >gi|148543499|ref|YP_001270869.1| transcription-repair coupling factor [Lactobacillus reuteri DSM 20016] gi|227363648|ref|ZP_03847762.1| transcription-repair coupling factor [Lactobacillus reuteri MM2-3] gi|325681843|ref|ZP_08161362.1| transcription-repair coupling factor [Lactobacillus reuteri MM4-1A] gi|148530533|gb|ABQ82532.1| transcription-repair coupling factor [Lactobacillus reuteri DSM 20016] gi|227071317|gb|EEI09626.1| transcription-repair coupling factor [Lactobacillus reuteri MM2-3] gi|324978934|gb|EGC15882.1| transcription-repair coupling factor [Lactobacillus reuteri MM4-1A] Length = 1179 Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 137/430 (31%), Positives = 233/430 (54%), Gaps = 21/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R + E +A ++ L +++ +K P + + ++ N P++ T+ Q Sbjct: 572 EWAKTKRRVSSKIEDIADELVDLYAKREAEKGYAFP--KDDYLQKQFDANFPYNETRDQL 629 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I +I +DM + M R+L GDVG GKT VA+ A+ AV G Q + P +LAQQHY Sbjct: 630 RSIDEIKEDMEKPKPMDRLLVGDVGYGKTEVAMRAIFKAVTGGKQVAFLVPTTVLAQQHY 689 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + I + +++ ++ + G +++GTH + +++ L L+ Sbjct: 690 NTLMRRFEGFPINIALMSRFKTPKELKETEAGLKDGSVDVVVGTHRILSKDVEFKDLGLL 749 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + KL Q VL +TATPIPRTL ++ LG D+S + PAGR PI Sbjct: 750 IVDEEQRFGVKHKEKLKQLKNNVDVLTLTATPIPRTLHMSMLGVRDLSVLETPPAGRYPI 809 Query: 459 KTVIIPINRI---DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 +T ++ N D +I ++ G + Y++ ++ + +E+ V L Sbjct: 810 QTYVMEQNSSAIRDGIIREMQ----RGGQVYYLHNRVHDIEET-----VAWLQELVPE-- 858 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + I I+G+MS+ + E+V+ F G +L+ T++IE G+D+ +A+ + +ENA+ GLAQ Sbjct: 859 ARIGYINGQMSENELETVLYEFIQGNYDVLVTTSIIETGVDIPNANTLFVENADRMGLAQ 918 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+Q+RGR+GR ++ +Y P L++ RL+ +++ TE GF IA DL R Sbjct: 919 LYQIRGRIGRSNRVAYAYFMYQPNKVLTELGEKRLAAIRDFTELGSGFKIAMRDLAIRGA 978 Query: 631 GEILGIKQSG 640 G +LG +Q G Sbjct: 979 GNLLGKQQHG 988 >gi|314949307|ref|ZP_07852650.1| transcription-repair coupling factor [Enterococcus faecium TX0082] gi|313644313|gb|EFS08893.1| transcription-repair coupling factor [Enterococcus faecium TX0082] Length = 1173 Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 141/431 (32%), Positives = 232/431 (53%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + L ++ +K G + ++ P+S T Q Sbjct: 570 EWTKTKRKVSSKIEDIADDLIKLYAARESEK--GYAFGPDDAYQKEFENAFPYSETDDQL 627 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I +DM ++ M R+L GDVG GKT VAL A A++ Q + P ILAQQHY Sbjct: 628 RSAAEIKRDMEKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 687 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + + + + + +++ + +++ +E++ GQ I++GTH + I++ L L+ Sbjct: 688 ETMLERFEGFPVNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGTHRILSKDIEFSDLGLL 747 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q VL +TATPIPRTL ++ LG D+S I PA R PI Sbjct: 748 IIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPI 807 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E I R + G + +++ ++E E+K + +V Sbjct: 808 QTYVMEKNPGSIREAIHR---EMGRGGQVFYLYNRVETIEQKVEEIQELVPE-------- 856 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + I HG+M++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 857 -ARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLS 915 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 916 TLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRG 975 Query: 630 EGEILGIKQSG 640 G +LG +Q G Sbjct: 976 AGNLLGAQQHG 986 >gi|226227554|ref|YP_002761660.1| transcription-repair coupling factor [Gemmatimonas aurantiaca T-27] gi|226090745|dbj|BAH39190.1| transcription-repair coupling factor [Gemmatimonas aurantiaca T-27] Length = 1104 Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 132/394 (33%), Positives = 217/394 (55%), Gaps = 19/394 (4%) Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313 P +G +++ + F T Q A +D+ +D+ + M R+L GDVG GKT +A+ A Sbjct: 548 PHGADGAWQRQLESSFLFEDTPDQRKATEDVKRDLEGERPMDRLLVGDVGYGKTEIAIRA 607 Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373 AV+ G Q ++ P ILA+QH + + VE+++ + + +E++ Sbjct: 608 AFKAVQGGRQVAVLVPTTILAEQHARSFGDRLADFPVTVEVMSRFQTASQQAVVVEKLKK 667 Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433 Q I+IGTH L + + L L+IVDE+HRFGV+ + +L Q + VL +TATPIPR Sbjct: 668 KQVDIVIGTHRLLSPDVAFGDLGLIIVDEEHRFGVKHKERLKQLKLSTDVLTLTATPIPR 727 Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQ 491 TL + G D++ + P R P+ T + P + I+E I R L G + +++ + Sbjct: 728 TLHQSLAGLRDLTLMQTAPRDRSPVLTFVEPFDDALIEEAISR---ELDRGGQVFFVHNR 784 Query: 492 IE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549 IE E + R +V R + +A+ HG+M + + E VM F G +L++T Sbjct: 785 IETIEAIADHLRRIVPR---------ARVAVGHGQMKERELEKVMRQFVEGEVDILVSTL 835 Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609 ++E G+DV +A+ + + A+H GLAQL+QLRGRVGR + C LL + +++ RL+ Sbjct: 836 IVESGLDVPNANTMFVNRADHLGLAQLYQLRGRVGRSHRRAYCFLLVPDRVDEDAERRLA 895 Query: 610 VLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 VL++ + G+ +A +DL+ R G +LG +QSG Sbjct: 896 VLEHHTELGAGYRVALKDLELRGAGNLLGPEQSG 929 >gi|257888639|ref|ZP_05668292.1| transcription-repair coupling factor [Enterococcus faecium 1,141,733] gi|257824693|gb|EEV51625.1| transcription-repair coupling factor [Enterococcus faecium 1,141,733] Length = 1173 Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 141/431 (32%), Positives = 232/431 (53%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + L ++ +K G + ++ P+S T Q Sbjct: 570 EWTKTKRKVSSKIEDIADDLIKLYAARESEK--GYAFGPDDAYQKEFENAFPYSETDDQL 627 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I +DM ++ M R+L GDVG GKT VAL A A++ Q + P ILAQQHY Sbjct: 628 RSAAEIKRDMEKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 687 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + + + + + +++ + +++ +E++ GQ I++GTH + I++ L L+ Sbjct: 688 ETMLERFEGFPVNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGTHRILSKDIEFSDLGLL 747 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q VL +TATPIPRTL ++ LG D+S I PA R PI Sbjct: 748 IIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPI 807 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E I R + G + +++ ++E E+K + +V Sbjct: 808 QTYVMEKNPGAIREAIHR---EMGRGGQVFYLYNRVETIEQKVEEIQELVPE-------- 856 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + I HG+M++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 857 -ARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLS 915 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 916 TLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRG 975 Query: 630 EGEILGIKQSG 640 G +LG +Q G Sbjct: 976 AGNLLGAQQHG 986 >gi|322392420|ref|ZP_08065880.1| transcription-repair coupling factor [Streptococcus peroris ATCC 700780] gi|321144412|gb|EFX39813.1| transcription-repair coupling factor [Streptococcus peroris ATCC 700780] Length = 1167 Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 150/407 (36%), Positives = 229/407 (56%), Gaps = 27/407 (6%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 P+ T+ Q +I++I +DM M R+L GDVG GKT VA+ A AV Q V++ Sbjct: 611 FPYVETEDQLRSIEEIKKDMQTPQPMDRLLVGDVGFGKTEVAMRAAFKAVNNHKQVVVLV 670 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQHY K+ + + V++++ + + + LE++ GQ I+IGTH + Sbjct: 671 PTTVLAQQHYSNFKERFEQFAVNVDVLSRFRSKKEQIETLEKLKKGQVDILIGTHRVLSK 730 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 +++ L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 731 DVEFADLGLIIIDEEQRFGVKHKEALKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSVI 790 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSV 503 P R P++T ++ N D VI VL E G + Y++ +++ EKK S + + Sbjct: 791 ETPPTNRYPVQTYVLEQN--DHVIR--DAVLREIDRGGQVYYLYNKVDTIEKKVSELQEL 846 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + +SI +HG+MS+I E+ + F G +L+ TT+IE G+D+ +A+ + Sbjct: 847 IPE---------ASIGFVHGQMSEIRLENTLLDFIEGEYDILVTTTIIETGVDIPNANTL 897 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGF 618 IENA+H GL+ L+QLRGRVGR I+ L+Y P L++ S RL +K TE GF Sbjct: 898 FIENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKSLTEVSEKRLEAIKGFTELGSGF 957 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 IA DL R G +LG QSG + EL+ LL+ IA+K+ Sbjct: 958 KIAMRDLSIRGAGNLLGSSQSGFIDSV--GFELYSQLLDEAIAKKNG 1002 >gi|257899966|ref|ZP_05679619.1| transcription-repair coupling factor [Enterococcus faecium Com15] gi|257837878|gb|EEV62952.1| transcription-repair coupling factor [Enterococcus faecium Com15] Length = 1173 Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 141/431 (32%), Positives = 232/431 (53%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + L ++ +K G + ++ P+S T Q Sbjct: 570 EWTKTKRKVSSKIEDIADDLIKLYAARESEK--GYAFGPDDAYQKEFENAFPYSETDDQL 627 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I +DM ++ M R+L GDVG GKT VAL A A++ Q + P ILAQQHY Sbjct: 628 RSAAEIKRDMEKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 687 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + + + + + +++ + +++ +E++ GQ I++GTH + I++ L L+ Sbjct: 688 ETMLERFEGFPVNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGTHRILSKDIEFSDLGLL 747 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q VL +TATPIPRTL ++ LG D+S I PA R PI Sbjct: 748 IIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPI 807 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E I R + G + +++ ++E E+K + +V Sbjct: 808 QTYVMEKNPGAIREAIHR---EMGRGGQVFYLYNRVETIEQKVEEIQELVPE-------- 856 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + I HG+M++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 857 -ARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLS 915 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 916 TLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRG 975 Query: 630 EGEILGIKQSG 640 G +LG +Q G Sbjct: 976 AGNLLGAQQHG 986 >gi|227514331|ref|ZP_03944380.1| transcription-repair coupling factor [Lactobacillus fermentum ATCC 14931] gi|227087303|gb|EEI22615.1| transcription-repair coupling factor [Lactobacillus fermentum ATCC 14931] Length = 1180 Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 140/431 (32%), Positives = 231/431 (53%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R A E +A + L +++ +K P + + +K P++ TK Q Sbjct: 568 EWAKTKRRVAAKIEDIADDLVDLYAKRETEKGFAFPKD--DYLQEKFDDEFPYAETKDQL 625 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I++I DM + M R+L GDVG GKT VAL A+ AV G Q + P ILAQQHY Sbjct: 626 QSIQEIKADMERPRPMDRLLVGDVGYGKTEVALRAIFKAVAGGKQVAFLVPTTILAQQHY 685 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALER-IAHGQAHIIIGTHALFQDSIQYYKLIL 397 + +K + + + +++ A K +R + +G+ I++GTH + +Q+ L L Sbjct: 686 DTMKARFEGFPVTIALMS-RFKTAKELKETDRGLLNGEIDIVVGTHRILSKDVQFKDLGL 744 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +IVDE+ RFGV+ + +L Q VL +TATPIPRTL ++ +G D+S + P GR P Sbjct: 745 LIVDEEQRFGVKHKERLKQLKANVDVLTLTATPIPRTLHMSMMGVRDLSVLETPPTGRYP 804 Query: 458 IKTVIIPINRI---DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 I+T ++ N D ++ ++ G + Y++ ++ + VV + L Sbjct: 805 IQTYVLEQNGAVIRDGILREMQ----RGGQVYYLHNRVH-----DIERVVAQLAELVPE- 854 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + I IHG+MS+ + E V+ F G +L+ T++IE G+D+ + + + +E+A+ GLA Sbjct: 855 -ARIGYIHGQMSENELEGVLYDFIRGEYDVLVTTSIIETGVDIANVNTLFVEDADRLGLA 913 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 QL+Q+RGR+GR ++ +Y L++ RL+ +++ TE GF IA DL R Sbjct: 914 QLYQIRGRIGRSNRVAYAYFMYQENKVLTEQGEKRLAAIRDFTELGSGFKIAMRDLSIRG 973 Query: 630 EGEILGIKQSG 640 G +LG +Q G Sbjct: 974 AGNLLGKQQHG 984 >gi|188995578|ref|YP_001929830.1| transcription-repair coupling factor [Porphyromonas gingivalis ATCC 33277] gi|188595258|dbj|BAG34233.1| transcription-repair coupling factor [Porphyromonas gingivalis ATCC 33277] Length = 1122 Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 143/408 (35%), Positives = 220/408 (53%), Gaps = 15/408 (3%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + Q K+E G + + + ++ + + T QE A ++ DM M R++ Sbjct: 523 LIRLYAQRKEERGFAFSPDSYLQHELEASFLYEDTPDQERATAEVKADMESDRPMDRLIC 582 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A A G Q I+ P +LA QHY+ + QN + +E I+ Sbjct: 583 GDVGFGKTEVAVRAAFKAATDGKQVAILVPTTVLAYQHYQTFRDRLQNFPVRIEYISRAR 642 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + L +A G+ IIIGTH L + I+++ L L+++DE+ +FGV + KL + Sbjct: 643 SAKDIKAILHDLAEGRIDIIIGTHRLVSNDIRFHDLGLLVIDEEQKFGVAVKEKLRKLQV 702 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 L M+ATPIPRTL + +G D+S I P R P+ T + + D V E + + Sbjct: 703 NVDTLTMSATPIPRTLQFSLMGARDLSNINTPPPNRYPVATELARFS-PDIVREAVNFEM 761 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 S + + + +I+ +E +V+R E + +A+ HGRMS + E ++ F + Sbjct: 762 SRNGQVFIVHNRIDNIEE--IAGIVQR-----EVPDARVAVGHGRMSPTELERLILDFVH 814 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 +L+ATT+IE GIDV +A+ III++A +GL++LHQLRGRVGR + C LL PP Sbjct: 815 YEYDVLVATTIIENGIDVPNANTIIIDDAHRYGLSELHQLRGRVGRSNRKAFCYLL-SPP 873 Query: 600 ---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 LS +S RL ++N D G IA +DL R G +LG +QSG Sbjct: 874 LSVLSDDSRRRLQAIENFSDLGSGIRIALQDLDIRGAGNVLGAEQSGF 921 >gi|188589474|ref|YP_001919598.1| transcription-repair coupling factor [Clostridium botulinum E3 str. Alaska E43] gi|188499755|gb|ACD52891.1| transcription-repair coupling factor [Clostridium botulinum E3 str. Alaska E43] Length = 1167 Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 157/467 (33%), Positives = 249/467 (53%), Gaps = 25/467 (5%) Query: 219 EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EW + A+ R + +++ + L R K G + + + ++ PF T Q Sbjct: 575 EWQKAKAKVRKSINDIAEDLVKLYATRSTIK---GHKFSKDTQWQRQFEDEFPFEETPDQ 631 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 +++++I +DM M R+L GDVG GKT VAL A AV G Q ++ P ILA+QH Sbjct: 632 LTSLEEIKKDMESDKVMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVALLVPTTILAEQH 691 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y+ +KK + I +++++ ++ ++R+ G I++GTH L IQ+ L L Sbjct: 692 YKNMKKRFSDFPIKIDMVSRFRTAKEQKATIQRLKEGNVDILVGTHKLVSKDIQFKDLGL 751 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +IVDE+ RFGV Q+ K+ VL ++ATPIPRTL ++ G DIS I P R P Sbjct: 752 LIVDEEQRFGVSQKEKIKNIKKNVDVLTLSATPIPRTLHMSLTGARDISVIETAPEERYP 811 Query: 458 IKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 ++T ++ N D++I +L E G + Y++ ++E+ E R V E Sbjct: 812 VQTYVVEQN--DQLIR--DAILREIGRGGQVYFVYNRVEDINEMA-RYVQELVPE----- 861 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 S +++ HG+M++ E M SF + +L+ TT+IE GID+ + + II+ N++ GL+ Sbjct: 862 -SKVSVTHGQMTERQLEKEMLSFMDQESNVLVCTTIIETGIDIPNVNTIIVYNSDKMGLS 920 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 QL+QLRGRVGR I+ LLY L++ + RL LK+ TE GF IA DL+ R Sbjct: 921 QLYQLRGRVGRSNRIAYAYLLYAKDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRG 980 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676 G I+G Q G +L+ +LE K K ++++P T+V Sbjct: 981 AGNIMGSSQHG--HMASVGYDLYCRMLEDTIKIIKGEISKEPIETTV 1025 >gi|51894370|ref|YP_077061.1| transcription-repair coupling factor [Symbiobacterium thermophilum IAM 14863] gi|51858059|dbj|BAD42217.1| transcription-repair coupling factor [Symbiobacterium thermophilum IAM 14863] Length = 1243 Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 149/412 (36%), Positives = 226/412 (54%), Gaps = 21/412 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +AI +I DM + M R+L GDVG GKT VAL A A AG Q I+ P Sbjct: 686 PYEETPDQLTAIAEIKADMEKARPMDRLLLGDVGYGKTEVALRAAFKAATAGKQVAILVP 745 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHY K + I + ++ + + + +A G ++IGTH L D Sbjct: 746 TTILAQQHYATCKSRMEGFPINLAVLNRFKSPKEQAEIIRGLAEGTIDVVIGTHRLLSDD 805 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +++ L L+IVDE+ RFGV + ++ Q VL ++ATPIPRTL + +G D+S IT Sbjct: 806 VKFKDLGLLIVDEEQRFGVAHKERIKQLRANVDVLTLSATPIPRTLHMAMVGLRDMSIIT 865 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R P++T + + + + I R LS G + +++ +I+ V R Sbjct: 866 TPPEDRYPVETFVAEYDDALVQDAIGR---ELSRGGQVFYVHNRIQ-----TLDDVAARL 917 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + L + IA+ HG+MS+ E ++ F +G +L+ATT+IE GID+ + II+E+ Sbjct: 918 HRLVPE--ARIAVAHGQMSEDRLEKIVLDFMDGEYDVLVATTIIENGIDMPQVNTIIVED 975 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622 A+H GL+QL+QLRGRVGR ++ LY L++ S RL +K+ TE GF IA Sbjct: 976 ADHLGLSQLYQLRGRVGRSNRLAYAYFLYRRDKVLTEASEKRLRAIKDFTELGSGFKIAM 1035 Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQP-ELHDSLLEIARKDAKHILTQDPDL 673 DL+ R G ILG +Q G F+++ +L+ LLE A ++ K +P++ Sbjct: 1036 RDLEIRGAGNILGPEQHG---FIVSVGFDLYCQLLEEAVRELKGEPAPEPEI 1084 >gi|323465804|gb|ADX69491.1| Transcriptional repair coupling factor [Lactobacillus helveticus H10] Length = 1165 Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 142/430 (33%), Positives = 236/430 (54%), Gaps = 19/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ + E +A + L +++ +K G + + + ++ P++ T Q Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKQFEDAFPYAETLDQL 620 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +IK+I +DM + M R++ GDVG GKT VAL A A++ Q + P ILAQQHY Sbjct: 621 RSIKEIKEDMEKPKPMDRLVVGDVGFGKTEVALRAAFKAIQDNKQVAFLVPTTILAQQHY 680 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I+ ++ + +++ A ++ +E + G+ +++GTH L +++ L L+ Sbjct: 681 ETIQDRFKDFPVNTAMLSRFQTPAESKEIIEGLKEGKIDLVVGTHRLLSKDVEFKDLGLL 740 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + +L Q VL +TATPIPRTL ++ +G D+S + P R PI Sbjct: 741 IVDEEQRFGVKHKERLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800 Query: 459 KTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T + + +I V+ L+ + +G + +++ +I S+ VE+ L + + Sbjct: 801 QTYV--MEQIPSVVRDACLREMQRDG-QVFYLHNRI-----SDIDETVEKLQQLIPN--A 850 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 IA HGRMS E ++ F N +L+ TT+IE GID+ + + +IIE+A+H+GL+QL Sbjct: 851 RIASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQL 910 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGR+GR ++ LY P L++ RL +++ TE GF IA DL R G Sbjct: 911 YQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAG 970 Query: 632 EILGIKQSGM 641 +LG +Q G Sbjct: 971 NMLGAQQHGF 980 >gi|321313725|ref|YP_004206012.1| transcription-repair coupling factor [Bacillus subtilis BSn5] gi|320019999|gb|ADV94985.1| transcription-repair coupling factor [Bacillus subtilis BSn5] Length = 1177 Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 137/380 (36%), Positives = 214/380 (56%), Gaps = 21/380 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q +I +I +DM ++ M R+L GDVG GKT VA+ A A+ G Q ++ P Sbjct: 621 PYQETEDQLRSIHEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIGDGKQVALLVP 680 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHYE IK+ Q+ I + +++ + + ++ + +G I+IGTH L Sbjct: 681 TTILAQQHYETIKERFQDYPINIGLLSRFRTRKEANETIKGLKNGTVDIVIGTHRLLSKD 740 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG D+S I Sbjct: 741 VVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGVRDLSVIE 800 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 P R P++T ++ N + E IER L+ G + Y++ ++E E+K +V Sbjct: 801 TPPENRFPVQTYVVEYNGALVREAIER---ELARGGQVYFLYNRVEDIERKADEISMLVP 857 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + +A HG+M++ + E+VM SF G +L++TT+IE G+D+ + + +I+ Sbjct: 858 ---------DAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIV 908 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620 +A+ GL+QL+QLRGRVGR ++ Y L++ + RL +K TE GF I Sbjct: 909 FDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKI 968 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL R G +LG +Q G Sbjct: 969 AMRDLTIRGAGNLLGAQQHG 988 >gi|251779351|ref|ZP_04822271.1| transcription-repair coupling factor [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083666|gb|EES49556.1| transcription-repair coupling factor [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 1167 Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 157/467 (33%), Positives = 249/467 (53%), Gaps = 25/467 (5%) Query: 219 EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EW + A+ R + +++ + L R K G + + + ++ PF T Q Sbjct: 575 EWQKAKAKVRKSINDIAEDLVKLYATRSTIK---GHKFSKDTQWQRQFEDEFPFEETPDQ 631 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 +++++I +DM M R+L GDVG GKT VAL A AV G Q ++ P ILA+QH Sbjct: 632 LTSLEEIKKDMESDKVMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVALLVPTTILAEQH 691 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y+ +KK + I +++++ ++ ++R+ G I++GTH L IQ+ L L Sbjct: 692 YKNMKKRFSDFPIKIDMVSRFRTAKEQKATIQRLKEGNVDILVGTHKLVSKDIQFKDLGL 751 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +IVDE+ RFGV Q+ K+ VL ++ATPIPRTL ++ G DIS I P R P Sbjct: 752 LIVDEEQRFGVSQKEKIKNIKKNVDVLTLSATPIPRTLHMSLTGARDISVIETAPEERYP 811 Query: 458 IKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 ++T ++ N D++I +L E G + Y++ ++E+ E R V E Sbjct: 812 VQTYVVEQN--DQLIR--DAILREIGRGGQVYFVYNRVEDINEMA-RYVQELVPE----- 861 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 S +++ HG+M++ E M SF + +L+ TT+IE GID+ + + II+ N++ GL+ Sbjct: 862 -SKVSVTHGQMTERQLEKEMLSFMDQESNVLVCTTIIETGIDIPNVNTIIVYNSDKMGLS 920 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 QL+QLRGRVGR I+ LLY L++ + RL LK+ TE GF IA DL+ R Sbjct: 921 QLYQLRGRVGRSNRIAYAYLLYAKDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRG 980 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676 G I+G Q G +L+ +LE K K ++++P T+V Sbjct: 981 AGNIMGSSQHG--HMASVGYDLYCRMLEDTIKIIKGEISKEPIETTV 1025 >gi|325684691|gb|EGD26845.1| transcription-repair coupling factor [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 1158 Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 140/430 (32%), Positives = 224/430 (52%), Gaps = 19/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW + A E +A + L +++ +K G + +G P+ PT Q Sbjct: 557 EWAKTKKRVAARVEDIADDLIDLYAKREAEK--GFAFSPDGSDQAAFEAAFPYEPTPDQL 614 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 A +I DM + M R+L GDVG GKT VA+ A A+ G Q + P ILAQQHY Sbjct: 615 RATAEIKADMEKAKPMDRLLVGDVGFGKTEVAMRAAFKAICDGKQVAFLVPTTILAQQHY 674 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + IK + + + + QA +K + + G +++GTH + +Q+ L L+ Sbjct: 675 QTIKDRFKGFPVEIASFSRFQGQAESKKIVAGLKDGSIDLVVGTHRILSKDVQFKDLGLL 734 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV + KL Q T VL +TATPIPRTL ++ +G D+S + P R PI Sbjct: 735 IIDEEQRFGVAHKEKLKQLKTNIDVLTLTATPIPRTLHMSMIGIRDLSVMETPPQNRYPI 794 Query: 459 KTVIIPI--NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T ++ + E +R + G + +++ ++ + +E+ V R L + Sbjct: 795 QTYVLEQLPGTVKEACQR---EMQRGGQVFYLHNRVGDIEET-----VARLEQLLPE--A 844 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 IA HG+MS+ E ++ F + +L+ TT+IE GID+ + + +IIE+A+H+GL+QL Sbjct: 845 RIAYAHGQMSENQLEDILSRFLDREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQL 904 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 +QLRGR+GR ++ LY P L++ RL +++ + GF IA DL R G Sbjct: 905 YQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAMRDFTELGAGFKIAMRDLSIRGAG 964 Query: 632 EILGIKQSGM 641 +LG +Q G Sbjct: 965 NMLGAQQHGF 974 >gi|291522023|emb|CBK80316.1| transcription-repair coupling factor [Coprococcus catus GD/7] Length = 1178 Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 145/430 (33%), Positives = 237/430 (55%), Gaps = 21/430 (4%) Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EWT + + + A EL + L R++ + + P V + +++ P+ T+ Q Sbjct: 577 EWTRTKTKVKGAVRELAMDLVKLYAARQESEGYVCGPDTVWQREFEEMF---PYEETQDQ 633 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 AI+ +DM M R++ GDVG GKT VA+ A V+ G Q ++ P ILAQQH Sbjct: 634 LDAIEATKRDMESTKIMDRLVCGDVGFGKTEVAIRAAFKMVQEGRQCAVLVPTTILAQQH 693 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y + + + + +++ +A ++K LE + G+ I+IGTH L +++ L L Sbjct: 694 YNTFCQRMKEYPVNIGLLSRFRTKAEQKKTLEDLKAGRVDIVIGTHRLLSKDVEFKNLGL 753 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 ++VDE+ RFGV + K+ + VL +TATPIPRT+ ++ +G D+S + E P R+P Sbjct: 754 LVVDEEQRFGVTHKEKIKKIKENVDVLTLTATPIPRTMHMSLIGIRDMSLLEEAPVDRQP 813 Query: 458 IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-T 515 I+T ++ N DE+I E + L+ G + Y++ ++ + E L E Sbjct: 814 IQTYVMEYN--DELIREAIMRELARGGQVYYVYNRV--------NGIDEIAAGLSELVPD 863 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 +S+A HG+MS+ + E +M F NG +L++TT+IE G+D+ + + +II +A+ GL+Q Sbjct: 864 ASVAYAHGQMSERELEKIMYQFINGEIDVLVSTTIIETGLDISNVNTMIIHDADKLGLSQ 923 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGRVGR S L+Y L + + RLS ++ TE G+ IA DL+ R Sbjct: 924 LYQLRGRVGRSNRTSYAFLMYKRDKMLKEVAEKRLSAIREFTELGSGYRIAMRDLEIRGA 983 Query: 631 GEILGIKQSG 640 G +LG +QSG Sbjct: 984 GNLLGERQSG 993 >gi|260663740|ref|ZP_05864628.1| transcription-repair coupling factor [Lactobacillus fermentum 28-3-CHN] gi|260551791|gb|EEX24907.1| transcription-repair coupling factor [Lactobacillus fermentum 28-3-CHN] Length = 1180 Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 140/431 (32%), Positives = 231/431 (53%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R A E +A + L +++ +K P + + +K P++ TK Q Sbjct: 568 EWAKTKRRVAAKIEDIADDLVDLYAKRETEKGFAFPKD--DYLQEKFDDEFPYAETKDQL 625 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I++I DM + M R+L GDVG GKT VAL A+ AV G Q + P ILAQQHY Sbjct: 626 QSIQEIKADMERPRPMDRLLVGDVGYGKTEVALRAIFKAVAGGKQVAFLVPTTILAQQHY 685 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALER-IAHGQAHIIIGTHALFQDSIQYYKLIL 397 + +K + + + +++ A K +R + +G+ I++GTH + +Q+ L L Sbjct: 686 DTMKARFEGFPVTIALMS-RFKTAKELKETDRGLLNGEIDIVVGTHRILSKDVQFKDLGL 744 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +IVDE+ RFGV+ + +L Q VL +TATPIPRTL ++ +G D+S + P GR P Sbjct: 745 LIVDEEQRFGVKHKERLKQLKANVDVLTLTATPIPRTLHMSMMGVRDLSVLETPPTGRYP 804 Query: 458 IKTVIIPINRI---DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 I+T ++ N D ++ ++ G + Y++ ++ + VV + L Sbjct: 805 IQTYVLEQNGAVIRDGILREMQ----RGGQVYYLHNRVH-----DIERVVAQLAELVPE- 854 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + I IHG+MS+ + E V+ F G +L+ T++IE G+D+ + + + +E+A+ GLA Sbjct: 855 -ARIGYIHGQMSENELEGVLYDFIRGEYDVLVTTSIIETGVDIANVNTLFVEDADRLGLA 913 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 QL+Q+RGR+GR ++ +Y L++ RL+ +++ TE GF IA DL R Sbjct: 914 QLYQIRGRIGRSNRVAYAYFMYQENKVLTEQGEKRLAAIRDFTELGSGFKIAMRDLSIRG 973 Query: 630 EGEILGIKQSG 640 G +LG +Q G Sbjct: 974 AGNLLGKQQHG 984 >gi|184152907|ref|YP_001841248.1| transcription-repair coupling factor [Lactobacillus reuteri JCM 1112] gi|183224251|dbj|BAG24768.1| transcription-repair coupling factor [Lactobacillus reuteri JCM 1112] Length = 1178 Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 137/430 (31%), Positives = 233/430 (54%), Gaps = 21/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R + E +A ++ L +++ +K P + + ++ N P++ T+ Q Sbjct: 571 EWAKTKRRVSSKIEDIADELVDLYAKREAEKGYAFP--KDDYLQKQFDANFPYNETRDQL 628 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I +I +DM + M R+L GDVG GKT VA+ A+ AV G Q + P +LAQQHY Sbjct: 629 RSIDEIKEDMEKPKPMDRLLVGDVGYGKTEVAMRAIFKAVTGGKQVAFLVPTTVLAQQHY 688 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + I + +++ ++ + G +++GTH + +++ L L+ Sbjct: 689 NTLMRRFEGFPINIALMSRFKTPKELKETEAGLKDGSVDVVVGTHRILSKDVEFKDLGLL 748 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + KL Q VL +TATPIPRTL ++ LG D+S + PAGR PI Sbjct: 749 IVDEEQRFGVKHKEKLKQLKNNVDVLTLTATPIPRTLHMSMLGVRDLSVLETPPAGRYPI 808 Query: 459 KTVIIPINRI---DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 +T ++ N D +I ++ G + Y++ ++ + +E+ V L Sbjct: 809 QTYVMEQNSSAIRDGIIREMQ----RGGQVYYLHNRVHDIEET-----VAWLQELVPE-- 857 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + I I+G+MS+ + E+V+ F G +L+ T++IE G+D+ +A+ + +ENA+ GLAQ Sbjct: 858 ARIGYINGQMSENELETVLYEFIQGNYDVLVTTSIIETGVDIPNANTLFVENADRMGLAQ 917 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+Q+RGR+GR ++ +Y P L++ RL+ +++ TE GF IA DL R Sbjct: 918 LYQIRGRIGRSNRVAYAYFMYQPNKVLTELGEKRLAAIRDFTELGSGFKIAMRDLAIRGA 977 Query: 631 GEILGIKQSG 640 G +LG +Q G Sbjct: 978 GNLLGKQQHG 987 >gi|306826192|ref|ZP_07459527.1| transcription-repair coupling factor [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431668|gb|EFM34649.1| transcription-repair coupling factor [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 1167 Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 145/405 (35%), Positives = 229/405 (56%), Gaps = 23/405 (5%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 P+ T Q +I++I +DM + M R+L GDVG GKT VA+ A AV Q V++ Sbjct: 609 FPYVETDDQLRSIEEIKRDMQDSHPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLV 668 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQHY K+ QN + +++++ + + + LE++ +GQ I+IGTH + Sbjct: 669 PTTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQSETLEKLKNGQVDILIGTHRVLSK 728 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 + + L L+I+DE+ RFGV+ + L + VL +TATPIPRTL ++ LG D+S I Sbjct: 729 DVVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVI 788 Query: 449 TEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 P R P++T ++ N I + I R + G + Y++ +++ ++ ++ Sbjct: 789 ETPPTNRYPVQTYVLEKNPSVIRDAILR---EMERGGQVYYLYNKVD--------TIDQK 837 Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E ++I +HG+MS+I E+ + F G +L+ TT+IE G+D+ +A+ + I Sbjct: 838 VSELQELIPEAAIGYVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620 ENA+H GL+ L+QLRGRVGR I+ L+Y P +S+ S RL +K TE GF I Sbjct: 898 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663 A DL R G +LG QSG + EL+ LLE IA+++ Sbjct: 958 AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000 >gi|291482427|dbj|BAI83502.1| transcription-repair coupling factor [Bacillus subtilis subsp. natto BEST195] Length = 1177 Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 137/380 (36%), Positives = 214/380 (56%), Gaps = 21/380 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q +I +I +DM ++ M R+L GDVG GKT VA+ A A+ G Q ++ P Sbjct: 621 PYQETEDQLRSIHEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIGDGKQVALLVP 680 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHYE IK+ Q+ I + +++ + + ++ + +G I+IGTH L Sbjct: 681 TTILAQQHYETIKERFQDYPINIGLLSRFRTRKEANETIKGLKNGTVDIVIGTHRLLSKD 740 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG D+S I Sbjct: 741 VVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGVRDLSVIE 800 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 P R P++T ++ N + E IER L+ G + Y++ ++E E+K +V Sbjct: 801 TPPENRFPVQTYVVEYNGALVREAIER---ELARGGQVYFLYNRVEDIERKADEISMLVP 857 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + +A HG+M++ + E+VM SF G +L++TT+IE G+D+ + + +I+ Sbjct: 858 ---------DAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIV 908 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620 +A+ GL+QL+QLRGRVGR ++ Y L++ + RL +K TE GF I Sbjct: 909 FDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKI 968 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL R G +LG +Q G Sbjct: 969 AMRDLTIRGAGNLLGAQQHG 988 >gi|297582393|ref|YP_003698173.1| transcription-repair coupling factor [Bacillus selenitireducens MLS10] gi|297140850|gb|ADH97607.1| transcription-repair coupling factor [Bacillus selenitireducens MLS10] Length = 1186 Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 138/396 (34%), Positives = 217/396 (54%), Gaps = 17/396 (4%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G + +G ++ P+ T Q AI++I +DM Q M R+L GDVG GKT VAL Sbjct: 603 GFAFSPDGLEQREFESTFPYQETDDQLQAIEEIKKDMEQDRPMDRLLCGDVGYGKTEVAL 662 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A A+ G Q I+ P ILAQQHYE I++ Q+ I + +++ + ++ E + Sbjct: 663 RAAFKAIMDGKQVAILVPTTILAQQHYETIRERFQDFAINIGMLSRFRTRKQMKETTEAL 722 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 G I++GTH + + + +L L++VDE+ RFGV + K+ Q VL +TATPI Sbjct: 723 RKGTCDIVVGTHRILSKDVAFKELGLLVVDEEQRFGVTHKEKIKQLKANVDVLTLTATPI 782 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWIC 489 PRTL ++ LG D+S I P R P++T ++ N + E IER L+ + +++ Sbjct: 783 PRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEHNDAFVREAIER---ELAREGQVFYLY 839 Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549 ++E + V +R + ++IA HGRM++ E+VM F +G +L+ TT Sbjct: 840 NRVE-----DIEMVADRIGMMVPD--ANIAFAHGRMTEAQLEAVMLDFLSGETDVLVTTT 892 Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTR 607 +IE G+D+ + + +II+ A+ GL+QL+QLRGRVGR ++ + L++ + R Sbjct: 893 IIETGVDIPNVNTLIIQEADRMGLSQLYQLRGRVGRSNRVAYAYFTHQQDKVLTEVAERR 952 Query: 608 LSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640 L +K TE GF IA DL R G +LG +Q G Sbjct: 953 LQSIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHG 988 >gi|294618628|ref|ZP_06698167.1| transcription-repair coupling factor [Enterococcus faecium E1679] gi|291595147|gb|EFF26485.1| transcription-repair coupling factor [Enterococcus faecium E1679] Length = 1173 Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 141/431 (32%), Positives = 232/431 (53%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + L ++ +K G + ++ P+S T Q Sbjct: 570 EWTKTKRKVSSKIEDIADDLIKLYAARESEK--GYAFGPDDAYQKEFENAFPYSETDDQL 627 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I +DM ++ M R+L GDVG GKT VAL A A++ Q + P ILAQQHY Sbjct: 628 RSAAEIKRDMEKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 687 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + + + + + +++ + +++ +E++ GQ I++GTH + I++ L L+ Sbjct: 688 ETMLERFEGFPVNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGTHRILSKDIEFSDLGLL 747 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q VL +TATPIPRTL ++ LG D+S I PA R PI Sbjct: 748 IIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPI 807 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E I R + G + +++ ++E E+K + +V Sbjct: 808 QTYVMEKNPGAIREAIHR---EMGRGGQVFYLYNRVETIEQKVEEIQELVPE-------- 856 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + I HG+M++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 857 -ARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLS 915 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 916 TLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRG 975 Query: 630 EGEILGIKQSG 640 G +LG +Q G Sbjct: 976 AGNLLGAQQHG 986 >gi|69245443|ref|ZP_00603438.1| Transcription-repair coupling factor [Enterococcus faecium DO] gi|257879854|ref|ZP_05659507.1| transcription-repair coupling factor [Enterococcus faecium 1,230,933] gi|257882580|ref|ZP_05662233.1| transcription-repair coupling factor [Enterococcus faecium 1,231,502] gi|257891695|ref|ZP_05671348.1| transcription-repair coupling factor [Enterococcus faecium 1,231,410] gi|257894170|ref|ZP_05673823.1| transcription-repair coupling factor [Enterococcus faecium 1,231,408] gi|258614282|ref|ZP_05712052.1| transcription-repair coupling factor [Enterococcus faecium DO] gi|260559527|ref|ZP_05831708.1| transcription-repair coupling factor [Enterococcus faecium C68] gi|261206678|ref|ZP_05921376.1| transcription-repair coupling factor [Enterococcus faecium TC 6] gi|289565039|ref|ZP_06445493.1| transcription-repair coupling factor [Enterococcus faecium D344SRF] gi|293563193|ref|ZP_06677649.1| transcription-repair coupling factor [Enterococcus faecium E1162] gi|293570115|ref|ZP_06681195.1| transcription-repair coupling factor [Enterococcus faecium E1071] gi|294614900|ref|ZP_06694791.1| transcription-repair coupling factor [Enterococcus faecium E1636] gi|294623704|ref|ZP_06702537.1| transcription-repair coupling factor [Enterococcus faecium U0317] gi|314938215|ref|ZP_07845515.1| transcription-repair coupling factor [Enterococcus faecium TX0133a04] gi|314943110|ref|ZP_07849909.1| transcription-repair coupling factor [Enterococcus faecium TX0133C] gi|314952240|ref|ZP_07855255.1| transcription-repair coupling factor [Enterococcus faecium TX0133A] gi|314992098|ref|ZP_07857548.1| transcription-repair coupling factor [Enterococcus faecium TX0133B] gi|314996281|ref|ZP_07861337.1| transcription-repair coupling factor [Enterococcus faecium TX0133a01] gi|68195825|gb|EAN10261.1| Transcription-repair coupling factor [Enterococcus faecium DO] gi|257814082|gb|EEV42840.1| transcription-repair coupling factor [Enterococcus faecium 1,230,933] gi|257818238|gb|EEV45566.1| transcription-repair coupling factor [Enterococcus faecium 1,231,502] gi|257828055|gb|EEV54681.1| transcription-repair coupling factor [Enterococcus faecium 1,231,410] gi|257830549|gb|EEV57156.1| transcription-repair coupling factor [Enterococcus faecium 1,231,408] gi|260074626|gb|EEW62947.1| transcription-repair coupling factor [Enterococcus faecium C68] gi|260079171|gb|EEW66864.1| transcription-repair coupling factor [Enterococcus faecium TC 6] gi|289163246|gb|EFD11092.1| transcription-repair coupling factor [Enterococcus faecium D344SRF] gi|291587487|gb|EFF19371.1| transcription-repair coupling factor [Enterococcus faecium E1071] gi|291592186|gb|EFF23804.1| transcription-repair coupling factor [Enterococcus faecium E1636] gi|291596919|gb|EFF28137.1| transcription-repair coupling factor [Enterococcus faecium U0317] gi|291604843|gb|EFF34321.1| transcription-repair coupling factor [Enterococcus faecium E1162] gi|313589525|gb|EFR68370.1| transcription-repair coupling factor [Enterococcus faecium TX0133a01] gi|313593312|gb|EFR72157.1| transcription-repair coupling factor [Enterococcus faecium TX0133B] gi|313595635|gb|EFR74480.1| transcription-repair coupling factor [Enterococcus faecium TX0133A] gi|313598169|gb|EFR77014.1| transcription-repair coupling factor [Enterococcus faecium TX0133C] gi|313642411|gb|EFS06991.1| transcription-repair coupling factor [Enterococcus faecium TX0133a04] Length = 1173 Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 141/431 (32%), Positives = 232/431 (53%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + L ++ +K G + ++ P+S T Q Sbjct: 570 EWTKTKRKVSSKIEDIADDLIKLYAARESEK--GYAFGPDDAYQKEFENAFPYSETDDQL 627 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I +DM ++ M R+L GDVG GKT VAL A A++ Q + P ILAQQHY Sbjct: 628 RSAAEIKRDMEKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 687 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + + + + + +++ + +++ +E++ GQ I++GTH + I++ L L+ Sbjct: 688 ETMLERFEGFPVNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGTHRILSKDIEFSDLGLL 747 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q VL +TATPIPRTL ++ LG D+S I PA R PI Sbjct: 748 IIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPI 807 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E I R + G + +++ ++E E+K + +V Sbjct: 808 QTYVMEKNPGAIREAIHR---EMGRGGQVFYLYNRVETIEQKVEEIQELVPE-------- 856 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + I HG+M++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 857 -ARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLS 915 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 916 TLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRG 975 Query: 630 EGEILGIKQSG 640 G +LG +Q G Sbjct: 976 AGNLLGAQQHG 986 >gi|38233507|ref|NP_939274.1| transcription-repair coupling factor [Corynebacterium diphtheriae NCTC 13129] gi|38199767|emb|CAE49427.1| transcription-repair coupling factor [Corynebacterium diphtheriae] Length = 1264 Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 140/429 (32%), Positives = 225/429 (52%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W + ++ A +AG++ L ++Q G + ++ N P+ T+ Q Sbjct: 597 DWKNTKKKARAAVREIAGELVELYAKRQSAP--GHAFAPDSPWQHEMEDNFPYVETEDQM 654 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 AI + DM + + M R++ GDVG GKT VA+ A AV+ G Q V++ P +LAQQH Sbjct: 655 LAIDAVKADMEKPSPMDRVVVGDVGYGKTEVAVRAAFKAVQDGRQVVVLVPTTLLAQQHL 714 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 ++ + ++ ++ + ++ L+ +A G I+IGTH L Q +Q+ L LV Sbjct: 715 STFEERMAGFPVTIKGLSRFTSPSESKEILKGLADGSVDIVIGTHRLLQTGVQWKNLGLV 774 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + + T VL M+ATPIPRTL ++ G ++S I P R PI Sbjct: 775 IVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPI 834 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516 T + +V ++ L + +++ ++ EKK R +V + Sbjct: 835 LT-YVGAQEDKQVAAAIRRELLRDGQVFYVHNKVSDIEKKARELRELVPE---------A 884 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 I + HG+MS+ E + F + +L+ TT++E G+D+ +A+ +I+ENA H GL+QL Sbjct: 885 RIVVAHGQMSEELLEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQL 944 Query: 577 HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 HQLRGRVGR E LY L++NSY RL+ + D G +A +DL+ R G Sbjct: 945 HQLRGRVGRSRERGYAYFLYPKGATLTENSYDRLATIAQNNDLGAGMAVAMKDLEMRGAG 1004 Query: 632 EILGIKQSG 640 +LG +QSG Sbjct: 1005 NVLGAQQSG 1013 >gi|149371008|ref|ZP_01890603.1| transcription-repair coupling factor [unidentified eubacterium SCB49] gi|149355794|gb|EDM44352.1| transcription-repair coupling factor [unidentified eubacterium SCB49] Length = 1115 Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 140/424 (33%), Positives = 226/424 (53%), Gaps = 18/424 (4%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G N + + ++ + F T Q +A D+ DM + M R++ GDVG GKT VA+ Sbjct: 534 GFQYNPDSYLQHELESSFMFEDTPDQSTATADVKADMESERPMDRLVCGDVGFGKTEVAV 593 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A AV+ G Q I+ P ILA QH+ + + V+ + RR LE + Sbjct: 594 RAAFKAVDNGKQVAILVPTTILAYQHFNTFSERLSGMPVTVDYLNRFRTAKERRTVLEGL 653 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 G+ I+IGTH L S+++ L L+I+DE+ +FGV + KL L +TATPI Sbjct: 654 KDGKIDIVIGTHQLVSKSVEFKDLGLLIIDEEQKFGVAVKDKLKTIKENVDTLTLTATPI 713 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICP 490 PRTL + + D+S IT P R P++T ++ + E+I + ++ +S G + +++ Sbjct: 714 PRTLQFSLMAARDLSVITTPPPNRHPVETQVVRFEQ--ELIRDAVRYEISRGGQTFFVHN 771 Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550 +I+ KE +++R + I I HG+M E++M SF N +L+ATT+ Sbjct: 772 RIDNIKE--VAGMIQRLVP-----DAKIGIGHGQMDGKKLEALMLSFMNNEFDVLVATTI 824 Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRL 608 IE G+DV +A+ I I NA +FGL+ LHQ+RGRVGR + + C + P ++ ++ R+ Sbjct: 825 IESGLDVSNANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYSAMTDDARKRM 884 Query: 609 SVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKD 662 + L+ D G IA +DL+ R G++LG +QSG F Q L +++ E+ K+ Sbjct: 885 TALEQFSDLGSGINIAMKDLEIRGAGDLLGGEQSGFINEIGFETYQKILAEAIDELKEKE 944 Query: 663 AKHI 666 K + Sbjct: 945 FKDL 948 >gi|297611935|ref|NP_001068018.2| Os11g0533100 [Oryza sativa Japonica Group] gi|255680143|dbj|BAF28381.2| Os11g0533100 [Oryza sativa Japonica Group] Length = 823 Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 136/423 (32%), Positives = 236/423 (55%), Gaps = 23/423 (5%) Query: 227 RLAYDELLAGQIALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285 +LA +++ + L L R +Q + P+ ++ A+ P+ PT Q A D+ Sbjct: 228 KLAVQKMVVNLMELYLQRMRQKRPPYPKPVGMDQFTAE-----FPYEPTPDQNQAFIDVD 282 Query: 286 QDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI-KK 343 +D++++ M R++ GDVG GKT VA+ A+ + AG QA+++AP ILA+QHY+ + ++ Sbjct: 283 KDLTERETPMDRLICGDVGFGKTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSER 342 Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403 ++ I V + +G + + + + +I +G HII+GTHA+ + + Y L L++VDE+ Sbjct: 343 FSNYPDIKVAMFSGAQTKEEKDELITKIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEE 402 Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463 +FGVQQ+ K+ + VL ++ATPIPRTL L G D S ++ P R ++T + Sbjct: 403 QKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVS 462 Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIH 522 ++ + + +K L+ G + +++ P+I +++ + L + +A+ H Sbjct: 463 GFSK-ERALSAIKFELARGGQVFYVVPRI--------KAIDDVLQFLKDSLPDVPMAVAH 513 Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582 G+ + + M+ F G K+L+ T +IE GID+ +A+ ++++ AE FGLAQL+QLRGR Sbjct: 514 GKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGR 573 Query: 583 VGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIK 637 VGR L Y LSK + RL ++ D GF +AE+D+ R G + G + Sbjct: 574 VGRSGTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQ 633 Query: 638 QSG 640 QSG Sbjct: 634 QSG 636 >gi|118594716|ref|ZP_01552063.1| transcription-repair coupling factor [Methylophilales bacterium HTCC2181] gi|118440494|gb|EAV47121.1| transcription-repair coupling factor [Methylophilales bacterium HTCC2181] Length = 1133 Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 144/428 (33%), Positives = 228/428 (53%), Gaps = 19/428 (4%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W + L A ++ L ++ ++ IN+ ++ + PF T Q+ Sbjct: 539 WEKSKKRALLQIHDTAAELLDLYAKRSLQRGYSSKINLNDYVS--FVEGFPFEETVDQKE 596 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI+ +++DM M R++ GDVG GKT VAL A +V G QA+++ P +LA+QH+ Sbjct: 597 AIERVIEDMESARPMDRLICGDVGFGKTEVALRAAFISVLNGKQAIVLVPTTLLAEQHFN 656 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 I +E I+ + + ++LE++ G+ IIIGTH L Q I++ L LV+ Sbjct: 657 NFSDRFAKWPIKIEEISRFKSKKQQLESLEKLEEGKIDIIIGTHRLLQPDIKFKDLGLVV 716 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 +DE+HRFGV+Q+ KL VL +TATPIPRTL + G + S I P R IK Sbjct: 717 IDEEHRFGVRQKEKLKAFRRNVDVLALTATPIPRTLSMAMEGLREFSVIATPPQKRLSIK 776 Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517 T ++ ++ I E + R + G + Y++ ++ + +S+ E+ ++L + Sbjct: 777 TFVVNHSQGIIKEAVAR---EFNRGGQIYFLHNEV-----NTIQSMHEKLSALLP--DAK 826 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 I + HG++ + + E VM F +L+ +T+IE GID+ A+ II+ A+ FGLAQLH Sbjct: 827 IGVAHGQLQEKELERVMQDFHQQRINVLLCSTIIETGIDIPTANTIIMNRADKFGLAQLH 886 Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632 QLRGRVGR + LL L+ N+ RL ++ ED G+ +A DL+ R GE Sbjct: 887 QLRGRVGRSHHQAYAYLLIDEERKLTSNAKKRLEAIQLMEDLGAGYHLAMHDLEIRGAGE 946 Query: 633 ILGIKQSG 640 +LG QSG Sbjct: 947 LLGDNQSG 954 >gi|78066724|ref|YP_369493.1| transcription-repair coupling factor [Burkholderia sp. 383] gi|77967469|gb|ABB08849.1| transcription-repair coupling factor [Burkholderia sp. 383] Length = 1156 Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 157/433 (36%), Positives = 230/433 (53%), Gaps = 27/433 (6%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q Sbjct: 596 KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQ 655 Query: 324 AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 +++P +LA+QH + F ++ IVE+ + A+ +I G I+IGT Sbjct: 656 VALLSPTTLLAEQHTQTFADRFADWPVRIVELSRFKTAK-EVNAAIAQINEGSVDIVIGT 714 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G Sbjct: 715 HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 774 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498 D S I P R IKT + R +E + R ++ L G + Y++ ++E E +++ Sbjct: 775 RDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKA 831 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 ++V + I I HG+M + + E VM F +L+ TT+IE GIDV Sbjct: 832 MLEALVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 882 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616 A+ II+ ++ FGLAQLHQLRGRVGR + LL H P L+K + RL ++ E+ Sbjct: 883 SANTIIMHRSDKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEE 942 Query: 617 ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 GF +A DL+ R GE+LG KQSG + Q L+ +L A K K+ ++PDL Sbjct: 943 LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDL 998 Query: 674 TSVRGQSIRILLY 686 T+ + I L+ Sbjct: 999 TAPLAATTEINLH 1011 >gi|262376147|ref|ZP_06069377.1| transcription-repair coupling factor [Acinetobacter lwoffii SH145] gi|262308748|gb|EEY89881.1| transcription-repair coupling factor [Acinetobacter lwoffii SH145] Length = 1152 Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 140/428 (32%), Positives = 226/428 (52%), Gaps = 19/428 (4%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W R+ L +A ++ + R+ K GI V+ + + + T Q + Sbjct: 555 WNKAKRKALEQIHDVAAELLHIQARRSSKP--GISFEVDQSLYMQFASGFAYEETLDQAN 612 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI+ L DM Q M R++ GDVG GKT VA+ A AV+ Q I+ P +LAQQHY+ Sbjct: 613 AIEATLHDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNNRQVAILVPTTLLAQQHYD 672 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 K + + +E+++ K ++ + G+ I+IGTH + Q+++Q+ L L+I Sbjct: 673 SFKDRFADWPVRIEVLSRFGSSKAHTKTIDDLIEGKVDIVIGTHKILQENVQFKNLGLMI 732 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 VDE+HRFGV+ + ++ +L +TATPIPRTL + G D+S I PA R +K Sbjct: 733 VDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792 Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSS 517 T + + D + E + L G + Y++ +++ ++ + R +V + Sbjct: 793 T-FVQEHTDDTIKEAILRELLRGGQVYFLHNEVDTIDRAAEHIRKLVPE---------AR 842 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 + + HG+M + + E VM F + +L+ +T+IE GIDV +A+ I+IE A+ GLAQLH Sbjct: 843 VIVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQLH 902 Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632 QLRGRVGR + L+ L ++ RL ++ GF++A EDL+ R GE Sbjct: 903 QLRGRVGRSHHQAYAYLMVPSLKALKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGE 962 Query: 633 ILGIKQSG 640 +LG +QSG Sbjct: 963 LLGEQQSG 970 >gi|148260750|ref|YP_001234877.1| transcription-repair coupling factor [Acidiphilium cryptum JF-5] gi|326403946|ref|YP_004284028.1| transcription-repair-coupling factor [Acidiphilium multivorum AIU301] gi|146402431|gb|ABQ30958.1| transcription-repair coupling factor [Acidiphilium cryptum JF-5] gi|325050808|dbj|BAJ81146.1| transcription-repair-coupling factor [Acidiphilium multivorum AIU301] Length = 1144 Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 139/390 (35%), Positives = 209/390 (53%), Gaps = 18/390 (4%) Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317 +G A+ R P++ T+ Q AI D+++D++ M R++ GDVG GKT VAL A A Sbjct: 579 DGAFAEFCAR-FPYTETEDQARAIADVMEDLAAGKPMDRLVCGDVGFGKTEVALRAAFIA 637 Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377 +G Q ++ P +LA+QHY + I VE ++ + K +A G + Sbjct: 638 AMSGAQVAVVVPTTLLARQHYRLFSERFAGLPIRVEQLSRLVSAKDTAKVKAGLADGTVN 697 Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437 I++GTHAL +I + L L+IVDE+ FGV + +L Q HVL +TATPIPRTL L Sbjct: 698 IVVGTHALLSKTIAFADLALLIVDEEQHFGVAHKERLKQLKADIHVLTLTATPIPRTLQL 757 Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEK 495 G D+S IT P R ++T I+P ++ I E I R + G + + + P IE Sbjct: 758 ALTGVRDLSLITTPPVDRLAVRTFIMPWDKLVIREAIARERF---RGGQIFCVVPHIE-- 812 Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555 + + ER + ++ A HGR+ + E VM F G +L+AT ++E G+ Sbjct: 813 ---DIDRMRERLAEIAPDLRTATA--HGRLPPTEIERVMTEFSEGKHDVLLATNIVESGL 867 Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN 613 D+ + I+I A+ FGL QL+QLRGRVGRG++ L + L+ +S RL V++ Sbjct: 868 DMPAVNTILIWRADLFGLGQLYQLRGRVGRGKQRGYAYLTWPASHTLAASSQKRLEVMQT 927 Query: 614 TED---GFLIAEEDLKQRKEGEILGIKQSG 640 + GF +A DL R G +LG +QSG Sbjct: 928 LDTLGAGFTLASHDLDLRGAGNLLGDEQSG 957 >gi|78186513|ref|YP_374556.1| transcription-repair coupling factor [Chlorobium luteolum DSM 273] gi|78166415|gb|ABB23513.1| Transcription-repair coupling factor [Chlorobium luteolum DSM 273] Length = 1109 Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 151/449 (33%), Positives = 236/449 (52%), Gaps = 24/449 (5%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 I L+ + Q K + G + ++ + F T Q AI+++ +DM + M R+ Sbjct: 500 INLIKLYAQRKMQAGFAFGPDSIFMREFESSFIFEETPDQLKAIEEVKKDMQATHPMDRL 559 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 + GD G GKT +A+ A AVEA Q I+ P ILA QH E + N I + I++ Sbjct: 560 ICGDAGFGKTEIAMRAAFKAVEAKKQVAILTPTTILAHQHLETFTRRFLNFPITIAILSR 619 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 +P+A +++ + RI G+ I+IGTH L + + L L+++DE+ FGV+ + KL ++ Sbjct: 620 FVPRAEQQETIRRIKEGKVDIVIGTHRLVSKDVSFRDLGLLVIDEEQHFGVEVKEKLREQ 679 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI--NRIDEVIERL 475 L M+ATPIPRTL + LG D+S ++ P R+P++TV+ + I IER Sbjct: 680 FPGVDTLTMSATPIPRTLQFSMLGARDLSIVSTPPKNRQPVETVVTDFEGDLIRSAIER- 738 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVM 534 + EG+ + + S+ E LH+ + I HG+M + E +M Sbjct: 739 -EIAREGQVFFL---------HNRVASLGEMQQLLHDLVPRARIVFAHGQMPARELEKIM 788 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 G +LI+TT+I GID+ +A+ III A+ FGL+ L+QLRGRVGR + + C L Sbjct: 789 MDVMQGEVDVLISTTIIGSGIDISNANTIIINRADMFGLSDLYQLRGRVGRSDRKAHCYL 848 Query: 595 LYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGM---PKFLI 646 + P L + + RL+V+++ TE GF IA DL R G +LG +QSG F + Sbjct: 849 ITPPLNTLKREAIQRLAVIESFTELGSGFTIALRDLDIRGAGNLLGAEQSGYIHDLGFDL 908 Query: 647 AQPELHDSLLEIARKDAKHILTQD--PDL 673 Q L ++ E+ D H+ T + PDL Sbjct: 909 YQKMLEQTVAELKSGDFSHLFTGEARPDL 937 >gi|304413564|ref|ZP_07395037.1| Transcription-repair coupling factor (superfamily II helicase) [Candidatus Regiella insecticola LSR1] gi|304284407|gb|EFL92800.1| Transcription-repair coupling factor (superfamily II helicase) [Candidatus Regiella insecticola LSR1] Length = 1165 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 140/380 (36%), Positives = 208/380 (54%), Gaps = 18/380 (4%) Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 ++ PF T QE I +L DM Q M R++ GDVG GKT VA+ A A+ Q + Sbjct: 616 QDFPFDTTPDQEKTINAVLNDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAIVNKKQTAV 675 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 + P +LAQQH++ + + +E+++ ++ ++ G+ I+IGTH L Sbjct: 676 LVPTTLLAQQHFDNFRDRFATWPVKIEMLSRFRRPKEQQAIFQQAYEGKIDILIGTHKLL 735 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 Q + + L L+IVDE+HRFGV+ + ++ T +L +TATPIPRTL + G D+S Sbjct: 736 QPHLHWKDLGLLIVDEEHRFGVRHKEQIKAMRTDVDILTLTATPIPRTLNMAMSGMRDLS 795 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSV 503 I PA R +KT + DE++ R + +L E G + +++ + EK E + Sbjct: 796 IIATPPARRLAVKTF---VREYDELLLR-EAILREILRGGQVFYLYNDV-EKIEGVATKL 850 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 E H IAI HG+M + D E VM+ F + +L+ TT+IE GIDV +A+ I Sbjct: 851 AELVPEAH------IAIGHGQMRERDLERVMNDFHHQRFNILVCTTIIETGIDVPNANTI 904 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLI 620 IIE A+ GLAQLHQLRGRVGR + LL P + ++ RL + + E+ GF + Sbjct: 905 IIERADRLGLAQLHQLRGRVGRSHHQAYAYLLT-PNIKSDAKKRLEAIASLEELGAGFAL 963 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R GE+LG QSG Sbjct: 964 ATHDLEIRGAGELLGEDQSG 983 >gi|255659238|ref|ZP_05404647.1| transcription-repair coupling factor [Mitsuokella multacida DSM 20544] gi|260848692|gb|EEX68699.1| transcription-repair coupling factor [Mitsuokella multacida DSM 20544] Length = 1129 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 144/436 (33%), Positives = 235/436 (53%), Gaps = 32/436 (7%) Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN-IPFSPTKS 276 EW + AR + + +++ I + RK K P + +Q+ + P+ T+ Sbjct: 501 EWVKAKARAKKSVEDIAQKLIEIYAKRKDAKGHAFPPDDA----SQREFEDAFPYEETED 556 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q AI +I DM ++ M R+L GDVG GKT VA+ A A G Q ++ P +LAQQ Sbjct: 557 QLRAIAEIKADMEREKPMDRLLCGDVGFGKTEVAIRAAYKAAMDGKQVAVLVPTTVLAQQ 616 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF-QDSIQYYKL 395 HY+ ++++I +++ +E++ GQ I+IGTHA+ Q+ +++ L Sbjct: 617 HYQTFTTRFNGFAPVIDVICRFRTPKQQKETIEKVRLGQVDILIGTHAILNQNKVKWKDL 676 Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 L+IVDE+ RFGV+Q+ K+ + A VL ++ATPIPRTL ++ +G D+S I PA R Sbjct: 677 GLLIVDEEQRFGVKQKDKIRKLAAGIDVLTLSATPIPRTLHMSLVGARDMSIIETPPAER 736 Query: 456 KPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 P++T ++ N D +I ++ + G + Y+I + V+ + + +H Sbjct: 737 FPVQTYVVENN--DTIIANAIRREMKRGGQVYFIYNR------------VDTIDRMRDHI 782 Query: 515 TS-----SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 S I HG+M + E VM F G +L+AT+++E G+DV +A+ II+ NA+ Sbjct: 783 ESLVPEARIQTAHGQMPEEMLEHVMMDFYEGDYDILLATSIVENGLDVANANTIIVYNAD 842 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEED 624 HFGL+QL+Q+RGRVGR ++ +Y L++ + RL +K + GF IA D Sbjct: 843 HFGLSQLYQMRGRVGRSHHMAFAYFVYQADKILTETAEKRLQAMKEFAELGAGFKIAMRD 902 Query: 625 LKQRKEGEILGIKQSG 640 L+ R G +LG +Q G Sbjct: 903 LEIRGAGNLLGAQQHG 918 >gi|152995735|ref|YP_001340570.1| transcription-repair coupling factor [Marinomonas sp. MWYL1] gi|150836659|gb|ABR70635.1| transcription-repair coupling factor [Marinomonas sp. MWYL1] Length = 1137 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 146/414 (35%), Positives = 225/414 (54%), Gaps = 21/414 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T Q+ AI ++ DMS K M R++ GDVG GKT VA+ A AV+ G Q ++ P Sbjct: 592 PFEETPDQQMAIDAVMADMSAKKPMDRLVCGDVGFGKTEVAMRAAFLAVQDGKQVAVLVP 651 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHYE + + +E+++ +++R+ G+A I++GTH L Q Sbjct: 652 TTLLAQQHYENFCDRFADWPVEIELLSRFRSGKQSNTSIDRLESGKADIVVGTHKLIQSD 711 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ L LVI+DE+HRFGV+Q+ + +L +TATPIPRTL ++ G D+S I Sbjct: 712 IKFANLGLVIIDEEHRFGVKQKEQFKALRAEVDILTLTATPIPRTLNMSLSGIRDLSIIA 771 Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 PA R +KT + + + E I R L G + Y++ +++ ++ + Sbjct: 772 TPPAKRLSVKTFVKQKDDHQTKEAILR---ELHRGGQVYYLHNEVQ--------TIQKTA 820 Query: 508 NSLHEHFTSSIAII-HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 L E + I+ HG+M + + E VM F + +L+ +T+IE GID+ +A+ IIIE Sbjct: 821 EELEELIPEARVIVGHGQMRERELEQVMSDFYHKRANVLVCSTIIETGIDIPNANTIIIE 880 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIA 621 A+ FGLAQLHQLRGRVGR + LL ++ ++ RL + + GF +A Sbjct: 881 RADKFGLAQLHQLRGRVGRSHHQAYAYLLTPNDRKVTGDAEKRLEAITLADTLGAGFTLA 940 Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 DL+ R GE+LG QSG + + L +L+ A K K+ + D D+TS Sbjct: 941 THDLEIRGTGELLGDGQSGHIEHVGFS--LFMDMLDRAVKSLKNGESPDIDITS 992 >gi|332685798|ref|YP_004455572.1| transcription-repair coupling factor [Melissococcus plutonius ATCC 35311] gi|332369807|dbj|BAK20763.1| transcription-repair coupling factor [Melissococcus plutonius ATCC 35311] Length = 1181 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 133/379 (35%), Positives = 212/379 (55%), Gaps = 17/379 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P++ T Q + +I DM + M R+L GDVG GKT VAL A A+ Q V + P Sbjct: 618 PYTETDDQLRSAAEIKHDMEKIRPMDRLLVGDVGYGKTEVALRAAFKAIACHKQVVFLVP 677 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHYE + + + V +++ + + + +++I HGQ I++GTH L Sbjct: 678 TTILAQQHYETMIDRFADFPVEVGLLSRFRTKKQQNETIQKIKHGQIDIVVGTHRLLSKD 737 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I + L L+I+DE+ RFGV+ + +L Q VL +TATPIPRTL ++ LG D+S I Sbjct: 738 ITFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIE 797 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERF 507 PA R PI+T I+ N + + E ++ L+ G + +++ ++E EKK +++V Sbjct: 798 TPPANRYPIQTYIME-NNLGAIREGIERELARGGQIFYLYNRVETIEKKVEEIKALVPE- 855 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + +A HG+M+++ E+ + F +L+ TT+IE G+D+ + + + +EN Sbjct: 856 --------ARVAYAHGQMTEVKLENTLFDFIEQQYDILVTTTIIETGVDIPNVNTLFVEN 907 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622 A++ GL+ L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA Sbjct: 908 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 967 Query: 623 EDLKQRKEGEILGIKQSGM 641 DL R G +LG +Q G Sbjct: 968 RDLSIRGAGNLLGAQQHGF 986 >gi|108864446|gb|ABA94062.2| CarD-like transcriptional regulator family protein, expressed [Oryza sativa Japonica Group] Length = 832 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 136/423 (32%), Positives = 236/423 (55%), Gaps = 23/423 (5%) Query: 227 RLAYDELLAGQIALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285 +LA +++ + L L R +Q + P+ ++ A+ P+ PT Q A D+ Sbjct: 237 KLAVQKMVVNLMELYLQRMRQKRPPYPKPVGMDQFTAE-----FPYEPTPDQNQAFIDVD 291 Query: 286 QDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI-KK 343 +D++++ M R++ GDVG GKT VA+ A+ + AG QA+++AP ILA+QHY+ + ++ Sbjct: 292 KDLTERETPMDRLICGDVGFGKTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSER 351 Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403 ++ I V + +G + + + + +I +G HII+GTHA+ + + Y L L++VDE+ Sbjct: 352 FSNYPDIKVAMFSGAQTKEEKDELITKIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEE 411 Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463 +FGVQQ+ K+ + VL ++ATPIPRTL L G D S ++ P R ++T + Sbjct: 412 QKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVS 471 Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIH 522 ++ + + +K L+ G + +++ P+I +++ + L + +A+ H Sbjct: 472 GFSK-ERALSAIKFELARGGQVFYVVPRI--------KAIDDVLQFLKDSLPDVPMAVAH 522 Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582 G+ + + M+ F G K+L+ T +IE GID+ +A+ ++++ AE FGLAQL+QLRGR Sbjct: 523 GKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGR 582 Query: 583 VGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIK 637 VGR L Y LSK + RL ++ D GF +AE+D+ R G + G + Sbjct: 583 VGRSGTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQ 642 Query: 638 QSG 640 QSG Sbjct: 643 QSG 645 >gi|187932793|ref|YP_001884406.1| transcription-repair coupling factor [Clostridium botulinum B str. Eklund 17B] gi|187720946|gb|ACD22167.1| transcription-repair coupling factor [Clostridium botulinum B str. Eklund 17B] Length = 1167 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 157/467 (33%), Positives = 249/467 (53%), Gaps = 25/467 (5%) Query: 219 EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EW + A+ R + +++ + L R K G + + + ++ PF T Q Sbjct: 575 EWQKAKAKVRKSINDIAEDLVKLYATRSTIK---GHKFSKDTQWQRQFEDEFPFEETPDQ 631 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 +++++I +DM M R+L GDVG GKT VAL A AV G Q ++ P ILA+QH Sbjct: 632 LTSLEEIKKDMESDKVMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVALLVPTTILAEQH 691 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y+ +KK + I +++++ ++ ++R+ G I++GTH L IQ+ L L Sbjct: 692 YKNMKKRFSDFPIKIDMVSRFRTAKEQKVTIQRLKEGNVDILVGTHKLVSKDIQFKDLGL 751 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +IVDE+ RFGV Q+ K+ VL ++ATPIPRTL ++ G DIS I P R P Sbjct: 752 LIVDEEQRFGVSQKEKIKNIKKNVDVLTLSATPIPRTLHMSLTGARDISVIETPPEERYP 811 Query: 458 IKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 ++T ++ N D++I +L E G + Y++ ++E+ E R V E Sbjct: 812 VQTYVVEQN--DQLIR--DAILREIGRGGQVYFVYNRVEDINEMA-RYVQELVPE----- 861 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 S +++ HG+M++ E M SF + +L+ TT+IE GID+ + + II+ N++ GL+ Sbjct: 862 -SKVSVTHGQMTERQLEKEMISFMDQESNVLVCTTIIETGIDIPNVNTIIVYNSDKMGLS 920 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 QL+QLRGRVGR I+ LLY L++ + RL LK+ TE GF IA DL+ R Sbjct: 921 QLYQLRGRVGRSNRIAYAYLLYTKDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRG 980 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676 G I+G Q G +L+ +LE K K ++++P T+V Sbjct: 981 AGNIMGSSQHG--HMASVGYDLYCRMLEDTIKLIKGDISKEPIETTV 1025 >gi|150388007|ref|YP_001318056.1| transcription-repair coupling factor [Alkaliphilus metalliredigens QYMF] gi|149947869|gb|ABR46397.1| transcription-repair coupling factor [Alkaliphilus metalliredigens QYMF] Length = 1174 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 135/406 (33%), Positives = 223/406 (54%), Gaps = 13/406 (3%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + + ++ G +G+ ++ P+ T Q +I+++ DM Q+ M R+L Sbjct: 593 LLKLYAERRRNKGHAFGNDGEWQKQFEDLFPYEETPDQLKSIEEVKADMEQEGAMDRLLC 652 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q + P ILAQQH+ K+ + VE+++ Sbjct: 653 GDVGYGKTEVAIRAGFKAVMDSKQVAFLVPTTILAQQHFNNFKQRFSGFPVTVEMLSRFK 712 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A +++ LE + G ++IGTH L I++ L L+IVDE+ RFGV+ + ++ Q Sbjct: 713 TPAQQKQVLEGVRTGNVDVLIGTHRLLSKDIEFKDLGLLIVDEEQRFGVKHKERMKQMKE 772 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 + VL +TATPIPRTL ++ +G D+S I + P R P++T +IP N +I+ + + Sbjct: 773 SIDVLTLTATPIPRTLHMSMVGIRDMSVIEDPPEERFPVQTYVIPYNE-SMIIDAITKEM 831 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 + G + Y++ +++ V + L + +A+ HG+M + + E +M + + Sbjct: 832 ARGGQTYYVYNRVD-----GIHQVARKLQELIPE--ARVAVGHGQMGERELEMLMMDYLD 884 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 G +L+ TT+IE G+D+ + + I+I +A+ GL+QL+QLRGRVGR + L+Y Sbjct: 885 GVYDVLVCTTIIETGLDISNVNTIMIHDADKLGLSQLYQLRGRVGRSSQQGYAYLMYQRD 944 Query: 600 --LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640 LS+ + RL +K TE GF IA DL+ R G +LG +Q G Sbjct: 945 KILSEVAEKRLKAIKEFTEFGSGFKIAMRDLEIRGAGNLLGSQQHG 990 >gi|288958061|ref|YP_003448402.1| transcription-repair coupling factor superfamily II helicase [Azospirillum sp. B510] gi|288910369|dbj|BAI71858.1| transcription-repair coupling factor superfamily II helicase [Azospirillum sp. B510] Length = 1171 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 144/426 (33%), Positives = 231/426 (54%), Gaps = 25/426 (5%) Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313 P+ + Q+ P+ T Q AI+DI D+ M R++ GDVG GKT VAL A Sbjct: 560 PVLTPEGVYQEFAARFPYPETDDQLKAIEDIFTDLGSGRPMDRLVCGDVGFGKTEVALRA 619 Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALER-I 371 +G Q ++ P +LA+QH+ F ++ +V++ M A + +++ + Sbjct: 620 AFMVAMSGKQVAVVVPTTLLARQHFRTFSSRFAGLPVRVVQL--SRMVTAREQTLVKKEL 677 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 A G A I++GTHAL + +L +VIVDE+ FGV+Q+ +L + HVL +TATPI Sbjct: 678 AEGTADIVVGTHALLAKGLDLKRLGMVIVDEEQHFGVKQKERLKELRADIHVLTLTATPI 737 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWI 488 PRTL + G ++S I P R ++T ++P D V+ R + +L E G + +++ Sbjct: 738 PRTLQMALSGVRELSLIATPPVDRLAVRTFVLP---YDPVVIR-EAILREHYRGGQTFYV 793 Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548 CP+IE + V ER L I HG+M+ + E VM +F G ++L+AT Sbjct: 794 CPRIE-----DLAKVAERVRELVPEV--KIVTAHGQMAASELEDVMTAFDEGKFEVLLAT 846 Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYT 606 +IE G+D+ +A+ +I+ A+ FGLAQL+Q+RGRVGR ++ L Y P PL+ + Sbjct: 847 NIIESGLDIPNANTLIVHRADLFGLAQLYQIRGRVGRSKKRGYAYLTYAPNKPLNATAQQ 906 Query: 607 RLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 RL V++ + GF +A D+ R G +LG +QSG + + EL+ +LE A +A Sbjct: 907 RLHVIETLDSLGAGFQLASHDMDIRGAGNLLGEEQSGQVREVGV--ELYQQMLEEAVANA 964 Query: 664 KHILTQ 669 + + + Sbjct: 965 RAAMQE 970 >gi|108864445|gb|ABG22504.1| CarD-like transcriptional regulator family protein, expressed [Oryza sativa Japonica Group] gi|215767702|dbj|BAG99930.1| unnamed protein product [Oryza sativa Japonica Group] Length = 590 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 128/379 (33%), Positives = 217/379 (57%), Gaps = 17/379 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 P+ PT Q A D+ +D++++ M R++ GDVG GKT VA+ A+ + AG QA+++A Sbjct: 34 PYEPTPDQNQAFIDVDKDLTERETPMDRLICGDVGFGKTEVAMRAIFIVISAGFQAMVLA 93 Query: 329 PIGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILA+QHY+ + ++++ I V + +G + + + + +I +G HII+GTHA+ Sbjct: 94 PTVILAKQHYDVMSERFSNYPDIKVAMFSGAQTKEEKDELITKIRNGDLHIIVGTHAVLT 153 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + + Y L L++VDE+ +FGVQQ+ K+ + VL ++ATPIPRTL L G D S Sbjct: 154 ERMAYNNLGLLVVDEEQKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASL 213 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 ++ P R ++T + ++ + + +K L+ G + +++ P+I +++ + Sbjct: 214 MSTPPPERVAVRTYVSGFSK-ERALSAIKFELARGGQVFYVVPRI--------KAIDDVL 264 Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 L + +A+ HG+ + + M+ F G K+L+ T +IE GID+ +A+ ++++ Sbjct: 265 QFLKDSLPDVPMAVAHGKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQ 324 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIA 621 AE FGLAQL+QLRGRVGR L Y LSK + RL ++ D GF +A Sbjct: 325 YAELFGLAQLYQLRGRVGRSGTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVA 384 Query: 622 EEDLKQRKEGEILGIKQSG 640 E+D+ R G + G +QSG Sbjct: 385 EKDMGIRGFGSLFGEQQSG 403 >gi|125577373|gb|EAZ18595.1| hypothetical protein OsJ_34121 [Oryza sativa Japonica Group] Length = 832 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 136/423 (32%), Positives = 236/423 (55%), Gaps = 23/423 (5%) Query: 227 RLAYDELLAGQIALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285 +LA +++ + L L R +Q + P+ ++ A+ P+ PT Q A D+ Sbjct: 237 KLAVQKMVVNLMELYLQRMRQKRPPYPKPVGMDQFTAE-----FPYEPTPDQNQAFIDVD 291 Query: 286 QDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI-KK 343 +D++++ M R++ GDVG GKT VA+ A+ + AG QA+++AP ILA+QHY+ + ++ Sbjct: 292 KDLTERETPMDRLICGDVGFGKTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSER 351 Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403 ++ I V + +G + + + + +I +G HII+GTHA+ + + Y L L++VDE+ Sbjct: 352 FSNYPDIKVAMFSGAQTKEEKDELITKIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEE 411 Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463 +FGVQQ+ K+ + VL ++ATPIPRTL L G D S ++ P R ++T + Sbjct: 412 QKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVS 471 Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIH 522 ++ + + +K L+ G + +++ P+I +++ + L + +A+ H Sbjct: 472 GFSK-ERALSAIKFELARGGQVFYVVPRI--------KAIDDVLQFLKDSLPDVPMAVAH 522 Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582 G+ + + M+ F G K+L+ T +IE GID+ +A+ ++++ AE FGLAQL+QLRGR Sbjct: 523 GKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGR 582 Query: 583 VGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIK 637 VGR L Y LSK + RL ++ D GF +AE+D+ R G + G + Sbjct: 583 VGRSGTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQ 642 Query: 638 QSG 640 QSG Sbjct: 643 QSG 645 >gi|194467674|ref|ZP_03073661.1| transcription-repair coupling factor [Lactobacillus reuteri 100-23] gi|194454710|gb|EDX43607.1| transcription-repair coupling factor [Lactobacillus reuteri 100-23] Length = 1179 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 137/430 (31%), Positives = 233/430 (54%), Gaps = 21/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R + E +A ++ L +++ +K P + + ++ N P++ T+ Q Sbjct: 572 EWAKTKRRVSSKIEDIADELVDLYAKREAEKGYAFP--KDDYLQKQFDANFPYNETRDQL 629 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I +I +DM + M R+L GDVG GKT VA+ A+ AV G Q + P +LAQQHY Sbjct: 630 RSIDEIKEDMEKPKPMDRLLVGDVGYGKTEVAMRAIFKAVTGGKQVAFLVPTTVLAQQHY 689 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + I + +++ ++ + G +++GTH + +++ L L+ Sbjct: 690 NTLMRRFEGFPINIALMSRFKTPKELKETEAGLKDGSVDVVVGTHRILSKDVEFKDLGLL 749 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + KL Q VL +TATPIPRTL ++ LG D+S + PAGR PI Sbjct: 750 IVDEEQRFGVKHKEKLKQLKNNVDVLTLTATPIPRTLHMSMLGVRDLSVLETPPAGRYPI 809 Query: 459 KTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 +T ++ N D +I ++ G + Y++ ++ + +E+ V L Sbjct: 810 QTYVMEQNSGAIRDGIIREMQ----RGGQVYYLHNRVHDIEET-----VAWLQELVPE-- 858 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + I I+G+MS+ + E+V+ F G +L+ T++IE G+D+ +A+ + +ENA+ GLAQ Sbjct: 859 ARIGYINGQMSENELETVLYEFIQGNYDVLVTTSIIETGVDIPNANTLFVENADRMGLAQ 918 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+Q+RGR+GR ++ +Y P L++ RL+ +++ TE GF IA DL R Sbjct: 919 LYQIRGRIGRSNRVAYAYFMYQPNKVLTELGEKRLAAIRDFTELGSGFKIAMRDLAIRGA 978 Query: 631 GEILGIKQSG 640 G +LG +Q G Sbjct: 979 GNLLGKQQHG 988 >gi|16126087|ref|NP_420651.1| transcription-repair coupling factor [Caulobacter crescentus CB15] gi|221234857|ref|YP_002517293.1| transcription-repair coupling factor [Caulobacter crescentus NA1000] gi|13423283|gb|AAK23819.1| transcription-repair coupling factor [Caulobacter crescentus CB15] gi|220964029|gb|ACL95385.1| transcription-repair coupling factor [Caulobacter crescentus NA1000] Length = 1155 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 145/416 (34%), Positives = 227/416 (54%), Gaps = 30/416 (7%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q SAI D+L+D+S M R++ GDVG GKT VAL A +G Q I+ P Sbjct: 604 PYEETDDQLSAIHDVLEDLSSGKPMDRLICGDVGFGKTEVALRAAFVVAMSGKQVAIVCP 663 Query: 330 IGILAQQHYEFIKKYTQNTQIIV----EIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +LA+QHY+ K Q + V ++TG R E +A+GQ I++GTHA+ Sbjct: 664 TTLLARQHYKTFKDRFQGWPVKVTRLSRLVTGKEAAETR----EGLANGQFEIVVGTHAI 719 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445 + + L LVIVDE+ FGV+ + KL + H+L +TATPIPRTL + G ++ Sbjct: 720 LSKQVSFKDLGLVIVDEEQHFGVKHKEKLKELRADVHMLTLTATPIPRTLQMALSGIREM 779 Query: 446 SKITEKPAGRKPIKTVIIPINRID--EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503 S I P R ++T I P + + E + R K G ++Y++ P+I++ ++ Sbjct: 780 SIIATPPVDRLAVRTYISPFDPVTLREALLREKY---RGGQSYYVVPRIKDLED------ 830 Query: 504 VERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 +E+F L + HG+M+ E VM +F G +L+ATT++E G+D+ A+ Sbjct: 831 IEKF--LRTQVPEVKFVVGHGQMAATQLEDVMTAFYEGQYDVLLATTIVESGLDIPSANT 888 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---G 617 +I+ A+ FGLAQL+Q+RGRVGR + + L L+ ++ RL VL++ + G Sbjct: 889 LIVHRADMFGLAQLYQIRGRVGRSKARAYAYLTTPVEKSLTPSAEKRLQVLQSLDSLGAG 948 Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFL---IAQPELHDSLLEIARKDAKHILTQD 670 F +A DL QR G +LG +QSG K + + Q L D++ E+ ++ + L +D Sbjct: 949 FQLASHDLDQRGGGNLLGDEQSGHIKEIGVELYQQMLEDAVAELRQRQGQEALLED 1004 >gi|227552670|ref|ZP_03982719.1| transcription-repair coupling factor [Enterococcus faecium TX1330] gi|257897406|ref|ZP_05677059.1| transcription-repair coupling factor [Enterococcus faecium Com12] gi|293378835|ref|ZP_06624990.1| transcription-repair coupling factor [Enterococcus faecium PC4.1] gi|227178199|gb|EEI59171.1| transcription-repair coupling factor [Enterococcus faecium TX1330] gi|257833971|gb|EEV60392.1| transcription-repair coupling factor [Enterococcus faecium Com12] gi|292642376|gb|EFF60531.1| transcription-repair coupling factor [Enterococcus faecium PC4.1] Length = 1173 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 141/431 (32%), Positives = 232/431 (53%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ + E +A + L ++ +K G + ++ P+S T Q Sbjct: 570 EWTKTKRKVSSKIEDIADDLIKLYAVRESEK--GYAFGPDDAYQKEFENAFPYSETDDQL 627 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I +DM ++ M R+L GDVG GKT VAL A A++ Q + P ILAQQHY Sbjct: 628 RSAAEIKRDMEKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 687 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + + + + + +++ + +++ +E++ GQ I++GTH + I++ L L+ Sbjct: 688 ETMLERFEGFPVNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGTHRILSKDIEFSDLGLL 747 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q VL +TATPIPRTL ++ LG D+S I PA R PI Sbjct: 748 IIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPI 807 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E I R + G + +++ ++E E+K + +V Sbjct: 808 QTYVMEKNPGAIREAIHR---EMGRGGQVFYLYNRVETIEQKVEEIQELVPE-------- 856 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + I HG+M++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 857 -ARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLS 915 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 916 TLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRG 975 Query: 630 EGEILGIKQSG 640 G +LG +Q G Sbjct: 976 AGNLLGAQQHG 986 >gi|330817293|ref|YP_004360998.1| Transcription-repair coupling factor [Burkholderia gladioli BSR3] gi|327369686|gb|AEA61042.1| Transcription-repair coupling factor [Burkholderia gladioli BSR3] Length = 1156 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 147/386 (38%), Positives = 208/386 (53%), Gaps = 21/386 (5%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q Sbjct: 595 KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 654 Query: 324 AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 +++P +LA+QH + FI ++ + + V ++ A+ +I G I+IGT Sbjct: 655 VALLSPTTLLAEQHTQTFIDRFA-DWPVRVAELSRFKSTKEVNAAIGQINEGSVDIVIGT 713 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G Sbjct: 714 HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 773 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESN 499 D S I P R IKT + D VI E + L G + Y++ ++E E +++ Sbjct: 774 RDFSVIATAPQKRLAIKTFVR--REEDSVIREAMLRELKRGGQVYFLHNEVETIENRKAM 831 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 +V + IAI HG+M + + E VM F +L+ TT+IE GIDV Sbjct: 832 LEELVPE---------ARIAIAHGQMHERELERVMRDFVGQRANVLLCTTIIETGIDVPS 882 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616 A+ II+ A+ FGLAQLHQLRGRVGR + LL H P L+K + RL ++ E+ Sbjct: 883 ANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEEL 942 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG KQSG Sbjct: 943 GSGFYLAMHDLEIRGTGEVLGDKQSG 968 >gi|323142960|ref|ZP_08077669.1| transcription-repair coupling factor [Succinatimonas hippei YIT 12066] gi|322417277|gb|EFY07902.1| transcription-repair coupling factor [Succinatimonas hippei YIT 12066] Length = 1164 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 146/416 (35%), Positives = 226/416 (54%), Gaps = 23/416 (5%) Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 +A ++ L R++ + G ++ + ++ + T Q +AI L DM Q Sbjct: 577 VAAELLDLYARRESRP--GHAFTIDERALEQFASGFGYEETPDQLAAINATLNDMQQGKP 634 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R++ GDVG GKT VAL A A +G Q ++ P ILA+QHY+ K+ T I+VE Sbjct: 635 MDRLVCGDVGFGKTEVALRAAFVAANSGMQVALLVPTTILAEQHYQNFKERFAGTAIVVE 694 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++ + + L+++A G I+IGTH L ++++ L LVIVDE+HRFGV+Q+ K Sbjct: 695 ELSRFKSIKEQNEILKKVASGGIDIVIGTHKLLSKTVKFKNLGLVIVDEEHRFGVKQKEK 754 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 L + +L +TATPIPRTL + G ++S I P R +KT + N E Sbjct: 755 LKELRAEVDLLTLTATPIPRTLNMAMEGMRELSIIATPPEHRLAVKT-FVSENSDQLCRE 813 Query: 474 RLKVVLSEGKKAYWI---CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530 + L G + Y++ I +K ES + V E + I I HG+M++ + Sbjct: 814 AIMRELRRGGQVYYLHNDVATINQKAESLQKLVPE----------AKIGIGHGQMAEREL 863 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 + VM F + LL+ +T+IE G+DV A+ III+ A+ GLAQLHQ+RGRVGR Sbjct: 864 QKVMRDFYHQRFNLLLCSTIIENGLDVSSANTIIIDRADLLGLAQLHQIRGRVGRSHH-Q 922 Query: 591 SCILLYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 + L+ PP ++K++ RL + + E+ GF++A DL+ R GE+LG +QSG Sbjct: 923 AYAYLFTPPKNLITKDAKRRLDAIASMEELGAGFVLATHDLEIRGAGELLGEEQSG 978 >gi|269122841|ref|YP_003305418.1| DEAD/DEAH box helicase domain-containing protein [Streptobacillus moniliformis DSM 12112] gi|268314167|gb|ACZ00541.1| DEAD/DEAH box helicase domain protein [Streptobacillus moniliformis DSM 12112] Length = 900 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 141/377 (37%), Positives = 212/377 (56%), Gaps = 18/377 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 F+ T Q+ A++DI D+ M RIL GDVG GKT VA+ A A+E G Q I+AP Sbjct: 400 SFNLTWDQQKAVEDIKHDLESGRLMDRILVGDVGYGKTEVAMRAAFKAIENGYQCAILAP 459 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA QH+E K ++ I V ++ + + L+ + +G+ ++IGTH L D Sbjct: 460 TTVLANQHFERCHKRFEDFGISVNNLS-RLTGKNTDDVLDGLKNGKIDLVIGTHRLLGDD 518 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +++ L L+I+DE+ +FGV + K+ ++ H+L ++ATPIPRTL L LG DIS I Sbjct: 519 VKFKNLGLLIIDEEQKFGVNAKEKIKKRKEDIHLLTLSATPIPRTLNLALLGIRDISLIQ 578 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P R PI T I + I +VI LK + +G + ++I +N + + E+ S Sbjct: 579 SSPMDRLPIITQKIQEDEIKKVI--LKELSRDG-QVFYIT--------NNVKGMAEKQKS 627 Query: 510 LHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 L + +I IHG++S + + ++ F G +LIA+T++E GID+ +A+ IIIEN Sbjct: 628 LKKLMPDFVNIEYIHGKLSPREIKQKINDFDEGKFDILIASTIVENGIDITNANSIIIEN 687 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILL---YHPPLSKNSYTRLSVLKNTE-DGFLIAEE 623 GL+Q++QLRGRVGRG+ C LL Y K L ++ E G+L++ E Sbjct: 688 YTSLGLSQIYQLRGRVGRGKRQGYCYLLDSEYKSKKGKEKDKSLEKIEGVEGGGYLLSLE 747 Query: 624 DLKQRKEGEILGIKQSG 640 DL R GEILG KQ G Sbjct: 748 DLNIRGAGEILGEKQHG 764 >gi|189466485|ref|ZP_03015270.1| hypothetical protein BACINT_02860 [Bacteroides intestinalis DSM 17393] gi|189434749|gb|EDV03734.1| hypothetical protein BACINT_02860 [Bacteroides intestinalis DSM 17393] Length = 1131 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 141/409 (34%), Positives = 220/409 (53%), Gaps = 17/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + Q ++E G +V+ + +++ + + T Q A D+ DM M R++ Sbjct: 532 LIKLYSQRREEKGFQFSVDSFLQRELEASFIYEDTPDQSKATADVKADMESNRPMDRLVC 591 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LA QH++ K+ ++ VE ++ Sbjct: 592 GDVGFGKTEVAVRAAFKAVADNKQVAVLVPTTVLAYQHFQTFKERLKDLPCRVEYLSRAR 651 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A + ++ +A G +I+IGTH + IQ+ L L+I+DE+ +FGV + KL Q Sbjct: 652 TAAQAKAVVKGLAAGDVNILIGTHRILGKDIQFKDLGLLIIDEEQKFGVSVKEKLRQLKV 711 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 L MTATPIPRTL + +G D+S I P R PI+T + N + +++ + + Sbjct: 712 NVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFNE-EVIVDAINFEM 770 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFK 538 S + + + +I E ++++ER H IAI HG+M + E ++ F Sbjct: 771 SRNGQVFLVNNRISNLPE--LKAMIER------HIPDCRIAIGHGQMEPTELEKIIFGFV 822 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 N +LIATT+IE GID+ +A+ III A++FGL+ LHQ+RGRVGR + + C LL P Sbjct: 823 NYDYDVLIATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-AP 881 Query: 599 PLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 PLS + RL ++N D G IA +DL R G +LG +QSG Sbjct: 882 PLSSLTPEARRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 930 >gi|313123080|ref|YP_004033339.1| transcription-repair coupling factor (superfamily ii helicase) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279643|gb|ADQ60362.1| Transcription-repair coupling factor (Superfamily II helicase) [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 1158 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 140/430 (32%), Positives = 224/430 (52%), Gaps = 19/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW + A E +A + L +++ +K G + +G P+ PT Q Sbjct: 557 EWAKTKKRVAARVEDIADDLIDLYAKREAEK--GFAFSPDGSDQAAFEAAFPYEPTPDQL 614 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 A +I DM + M R+L GDVG GKT VA+ A A+ G Q + P ILAQQHY Sbjct: 615 RATAEIKADMEKAKPMDRLLVGDVGFGKTEVAMRAAFKAICDGKQVAFLVPTTILAQQHY 674 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + IK + + + + QA +K + + G +++GTH + +Q+ L L+ Sbjct: 675 QTIKDRFKGFPVEIASFSRFQGQAESKKIVAGLKDGSIDLVVGTHRILSKDVQFKDLGLL 734 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV + KL Q T VL +TATPIPRTL ++ +G D+S + P R PI Sbjct: 735 IIDEEQRFGVAHKEKLKQLKTNIDVLTLTATPIPRTLHMSMIGIRDLSVMETPPQNRYPI 794 Query: 459 KTVIIPI--NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T ++ + E +R + G + +++ ++ + +E+ V R L + Sbjct: 795 QTYVLEQLPGTVKEACQR---EMQRGGQVFYLHNRVGDIEET-----VARLEQLLPE--A 844 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 IA HG+MS+ E ++ F + +L+ TT+IE GID+ + + +IIE+A+H+GL+QL Sbjct: 845 RIAYAHGQMSENQLEDILSRFLDREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQL 904 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 +QLRGR+GR ++ LY P L++ RL +++ + GF IA DL R G Sbjct: 905 YQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGAGFKIAMRDLSIRGAG 964 Query: 632 EILGIKQSGM 641 +LG +Q G Sbjct: 965 NMLGAQQHGF 974 >gi|116513512|ref|YP_812418.1| transcription-repair coupling factor [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116092827|gb|ABJ57980.1| transcription-repair coupling factor [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 1158 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 140/430 (32%), Positives = 224/430 (52%), Gaps = 19/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW + A E +A + L +++ +K G + +G P+ PT Q Sbjct: 557 EWAKTKKRVAARVEDIADDLIELYAKREAEK--GFAFSPDGSDQAAFEAAFPYEPTPDQL 614 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 A +I DM + M R+L GDVG GKT VA+ A A+ G Q + P ILAQQHY Sbjct: 615 RATAEIKADMEKAKPMDRLLVGDVGFGKTEVAMRAAFKAICDGKQVAFLVPTTILAQQHY 674 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + IK + + + + QA +K + + G +++GTH + +Q+ L L+ Sbjct: 675 QTIKDRFKGFPVEIASFSRFQGQAESKKIVAGLKDGSIDLVVGTHRILSKDVQFKDLGLL 734 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV + KL Q T VL +TATPIPRTL ++ +G D+S + P R PI Sbjct: 735 IIDEEQRFGVAHKEKLKQLKTNIDVLTLTATPIPRTLHMSMIGIRDLSVMETPPQNRYPI 794 Query: 459 KTVIIPI--NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T ++ + E +R + G + +++ ++ + +E+ V R L + Sbjct: 795 QTYVLEQLPGTVKEACQR---EMQRGGQVFYLHNRVGDIEET-----VARLEQLLPE--A 844 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 IA HG+MS+ E ++ F + +L+ TT+IE GID+ + + +IIE+A+H+GL+QL Sbjct: 845 RIAYAHGQMSENQLEDILSRFLDREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQL 904 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 +QLRGR+GR ++ LY P L++ RL +++ + GF IA DL R G Sbjct: 905 YQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGAGFKIAMRDLSIRGAG 964 Query: 632 EILGIKQSGM 641 +LG +Q G Sbjct: 965 NMLGAQQHGF 974 >gi|253582570|ref|ZP_04859791.1| transcription-repair coupling factor [Fusobacterium varium ATCC 27725] gi|251835440|gb|EES63980.1| transcription-repair coupling factor [Fusobacterium varium ATCC 27725] Length = 983 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 139/380 (36%), Positives = 221/380 (58%), Gaps = 18/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T SQ AI+D+ +DM M R++ GDVG GKT +AL A A G Q V+M Sbjct: 452 SFPYKETASQLKAIEDVKRDMESDRIMDRVICGDVGYGKTEIALRAAFKASIDGKQVVVM 511 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHYE + +N + +EI++ + +++ L +IA G I+IGTH + Sbjct: 512 VPTTVLAQQHYERFTERFKNYPVNIEILSRLKSEKEQKEVLNKIAAGTVDIVIGTHRILS 571 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++ L LV++DE+ +FGV+ + +L + ++ +TATPIPRTL L+ LG D+S Sbjct: 572 SDVKFKDLGLVVIDEEQKFGVKAKEQLKKLKNKIDMITLTATPIPRTLNLSLLGIRDLSV 631 Query: 448 ITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSV 503 I P GRKPI+TV I + +I E+I + + EG + ++I ++ EKK + R + Sbjct: 632 IDTPPEGRKPIETVFIEKDDKKIKEII--MSEIAREG-QVFYIFNSVKNIEKKTNELRKI 688 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + + L IHG+M + ++ + F+NG +L++TT++E GID+ +A+ + Sbjct: 689 LPSYLKLD--------YIHGQMLPKEIKNKIKDFENGDIDMLVSTTIVENGIDIENANTM 740 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLI 620 II+ E GL+Q++QLRGR+GRG C LL +K + R +KN D GF + Sbjct: 741 IIDGVEKLGLSQIYQLRGRIGRGRRKGYCYLLTKEYQTKKAKEREESIKNLGDSGGGFQL 800 Query: 621 AEEDLKQRKEGEILGIKQSG 640 + ED++ R GEILG +Q G Sbjct: 801 SLEDMRIRGAGEILGDRQHG 820 >gi|67921537|ref|ZP_00515055.1| Transcription-repair coupling factor [Crocosphaera watsonii WH 8501] gi|67856649|gb|EAM51890.1| Transcription-repair coupling factor [Crocosphaera watsonii WH 8501] Length = 1160 Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 135/400 (33%), Positives = 224/400 (56%), Gaps = 18/400 (4%) Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 K IG ++ Q++ + P+ PT Q AI+++ D+ M R++ GDVG GKT Sbjct: 588 KNIGFTYPLDTPWQQELEDSFPYQPTPDQLKAIQEVKIDLESDRPMDRLVCGDVGFGKTE 647 Query: 309 VALIAMAAAVEAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 VA+ A+ AV +G Q V +AP IL QQHY +K+ I + ++ + +++ Sbjct: 648 VAVRAIFKAVTSGHKQVVFLAPTTILTQQHYHTLKERFAPYPINIGLLNRFRTASEKKEI 707 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 ++R++ G+ I++GT L S+++ L L+++DE+ RFGV Q+ K+ + VL ++ Sbjct: 708 IQRLSTGELDIVVGTQQLLGKSVKFNDLGLLVIDEEQRFGVNQKEKIKDMKSHIDVLTLS 767 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL ++ G ++S IT P R+PIKT + N D V ++ L G + ++ Sbjct: 768 ATPIPRTLYMSLSGIREMSLITTPPPSRRPIKTHLSRYNP-DAVRNAIRNELDRGGQVFY 826 Query: 488 ICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545 + P++E E+ + + +V ++ +AI HG+M + E M F NG +L Sbjct: 827 VVPRVEGIEEVAAQIKRMVP---------SARMAIGHGQMDVNELEMTMLGFNNGDADIL 877 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKN 603 + TT++E G+D+ + II+E+A+ FGLAQL+QLRGRVGR + LLY L++ Sbjct: 878 VCTTIVESGLDIPRVNTIIVEDAQKFGLAQLYQLRGRVGRAGIQAHAWLLYPSKSELTET 937 Query: 604 SYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640 + RL L+ G+ +A D++ R G +LG +QSG Sbjct: 938 ARKRLRALQEFSQLGSGYQLATRDMEIRGVGNLLGAEQSG 977 >gi|304391611|ref|ZP_07373553.1| transcription-repair coupling factor [Ahrensia sp. R2A130] gi|303295840|gb|EFL90198.1| transcription-repair coupling factor [Ahrensia sp. R2A130] Length = 1169 Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 147/422 (34%), Positives = 235/422 (55%), Gaps = 35/422 (8%) Query: 234 LAGQIALLLMRKQFKKE--IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 +AGQ+ + +Q KK I +P V G+ A K P+ T Q +AI + D++ Sbjct: 588 MAGQLIAIAAARQLKKADPIQLPDGVYGEFAAKF----PYEETDDQLNAIDSVFADLASG 643 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-I 350 M R++ GDVG GKT VAL A +G Q ++ P +L++QH +K +T+ + Sbjct: 644 QPMDRLVCGDVGFGKTEVALRAAFLTAMSGKQVAVVVPTTLLSRQH---MKTFTERFHGL 700 Query: 351 IVEIITGNMPQAHRRKALERIA--HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408 ++I+ + + + + A G A IIIGTHAL SI++ +L L+I+DE+ FGV Sbjct: 701 PIKIVQASRLVGSKDLSAAKAAAKDGTADIIIGTHALLGKSIEFKRLGLLIIDEEQHFGV 760 Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468 + + +L + HVL ++ATPIPRTL L G ++S IT P R ++T ++P Sbjct: 761 KHKERLKELKADVHVLTLSATPIPRTLQLALTGVRELSLITTAPVDRMAVRTFVMP---F 817 Query: 469 DEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGR 524 D V+ R + +L E G +++++CP++ + + R L EH +A+ HG+ Sbjct: 818 DGVVVR-EALLRERYRGGQSFYVCPRLAD--------IRGREEWLAEHVPELKVAVAHGQ 868 Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584 M + E VM++F G +L++TT++E G+D+ A+ +I+ A+ FGLAQL+Q+RGRVG Sbjct: 869 MPPGELEDVMNAFYEGRYDVLLSTTIVESGLDIPTANTMIVHRADMFGLAQLYQMRGRVG 928 Query: 585 RGEEISSCILLYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQ 638 R + + LL PP L+ + RL VL++ + GF +A DL R G ILG +Q Sbjct: 929 R-SKTRAYALLTLPPKKVLTATAQRRLKVLQSLDTLGAGFQLASHDLDIRGAGNILGDEQ 987 Query: 639 SG 640 SG Sbjct: 988 SG 989 >gi|124385069|ref|YP_001029254.1| transcription-repair coupling factor [Burkholderia mallei NCTC 10229] gi|126448727|ref|YP_001080811.1| transcription-repair coupling factor [Burkholderia mallei NCTC 10247] gi|167919435|ref|ZP_02506526.1| transcription-repair coupling factor [Burkholderia pseudomallei BCC215] gi|238562222|ref|ZP_00440803.2| transcription-repair coupling factor [Burkholderia mallei GB8 horse 4] gi|251766640|ref|ZP_02264525.2| transcription-repair coupling factor [Burkholderia mallei PRL-20] gi|254178318|ref|ZP_04884973.1| transcription-repair coupling factor [Burkholderia mallei ATCC 10399] gi|254200090|ref|ZP_04906456.1| transcription-repair coupling factor [Burkholderia mallei FMH] gi|254206426|ref|ZP_04912778.1| transcription-repair coupling factor [Burkholderia mallei JHU] gi|254297281|ref|ZP_04964734.1| transcription-repair coupling factor [Burkholderia pseudomallei 406e] gi|254358165|ref|ZP_04974438.1| transcription-repair coupling factor [Burkholderia mallei 2002721280] gi|124293089|gb|ABN02358.1| transcription-repair coupling factor [Burkholderia mallei NCTC 10229] gi|126241597|gb|ABO04690.1| transcription-repair coupling factor [Burkholderia mallei NCTC 10247] gi|147749686|gb|EDK56760.1| transcription-repair coupling factor [Burkholderia mallei FMH] gi|147753869|gb|EDK60934.1| transcription-repair coupling factor [Burkholderia mallei JHU] gi|148027292|gb|EDK85313.1| transcription-repair coupling factor [Burkholderia mallei 2002721280] gi|157807451|gb|EDO84621.1| transcription-repair coupling factor [Burkholderia pseudomallei 406e] gi|160699357|gb|EDP89327.1| transcription-repair coupling factor [Burkholderia mallei ATCC 10399] gi|238523096|gb|EEP86537.1| transcription-repair coupling factor [Burkholderia mallei GB8 horse 4] gi|243065028|gb|EES47214.1| transcription-repair coupling factor [Burkholderia mallei PRL-20] Length = 1189 Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 154/432 (35%), Positives = 226/432 (52%), Gaps = 25/432 (5%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q Sbjct: 627 KFADSFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 686 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 +++P +LA+QH + + + + ++ A+ +I G I+IGTH Sbjct: 687 VALLSPTTLLAEQHTQTFADRFADWPVRIAELSRFKTAKEVNAAIAQINEGSVDIVIGTH 746 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443 L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G Sbjct: 747 KLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLR 806 Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESN 499 D S I P R IKT + R +E + R ++ L G + Y++ ++E E +++ Sbjct: 807 DFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKAM 863 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 +V + I I HG+M + + E VM F +L+ TT+IE GIDV Sbjct: 864 LEELVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPS 914 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616 A+ II+ A+ FGLAQLHQLRGRVGR + LL H P L+K + RL ++ E+ Sbjct: 915 ANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEEL 974 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 GF +A DL+ R GE+LG KQSG + Q L+ +L A K K+ ++PDLT Sbjct: 975 GSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLT 1030 Query: 675 SVRGQSIRILLY 686 + + I L+ Sbjct: 1031 APLAATTEINLH 1042 >gi|330984088|gb|EGH82191.1| transcription-repair coupling protein Mfd [Pseudomonas syringae pv. lachrymans str. M301315] Length = 1098 Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 151/438 (34%), Positives = 226/438 (51%), Gaps = 22/438 (5%) Query: 211 NPRKA-----KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI 265 NP KA D W +E A L+ L+ +R ++ G+ + G + Sbjct: 499 NPEKAPLSKLNDPTWLQSLKE--AQVSALSVAKDLITLRTARERSTGVILKPAGDSYDRF 556 Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 + T Q+ AI DI+ D++ M R++ GDVG GKT VA+ A + G Q Sbjct: 557 AETFAYDETADQKKAIADIMSDLTSGKPMDRLICGDVGFGKTEVAMRAAFMMADQGYQVA 616 Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 ++AP +LAQQHY + T V + N A RK L + G I+IGTH L Sbjct: 617 VLAPTTLLAQQHYSTFCSRFEETPHKVMLANKNTFSALERKQLSK---GDVQIVIGTHRL 673 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445 Q I + L L+IVDE+H FGV+Q+ +L H+L M ATPIPRTL + G D+ Sbjct: 674 LQGDINFRNLGLIIVDEEHLFGVKQKEQLRTVRGNKHLLSMAATPIPRTLGMAISGIRDM 733 Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504 S I PA R ++T++ N D VI E ++ +S + +++ +I + V Sbjct: 734 SIIATPPARRLSVRTLLREQN--DRVIQEAVQREMSRSGQVFYLHNRI-----GSMPDCV 786 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + SL + + IA++HG M + + +M +F+N +L+ TTVIE+GIDV +A+ +I Sbjct: 787 KHLQSLIPN--ARIAMVHGDMREDEMFDIMLAFRNREYDILVGTTVIEIGIDVPNANTLI 844 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTEDGFLIAE 622 +E A+ GL QLHQLRGRVGR + LL + ++ + N +GF+IA Sbjct: 845 VEKADALGLGQLHQLRGRVGRSTRQAYAYLLSNVSTGVANMRLKAMEAATNLGEGFVIAR 904 Query: 623 EDLKQRKEGEILGIKQSG 640 D++ R GEILG +QSG Sbjct: 905 HDMEIRGIGEILGEEQSG 922 >gi|116493280|ref|YP_805015.1| transcription-repair coupling factor [Pediococcus pentosaceus ATCC 25745] gi|116103430|gb|ABJ68573.1| transcription-repair coupling factor [Pediococcus pentosaceus ATCC 25745] Length = 1165 Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 135/427 (31%), Positives = 231/427 (54%), Gaps = 15/427 (3%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W + + E +A + L +++ +K G + ++ + P++ T Q Sbjct: 567 DWAKTKKNVASKIEDIADDLIELYAKREAEK--GFAFKPDDSYQRQFDNDFPYTETPDQL 624 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I++I +DM ++ M R+L GDVG GKT VAL A AVE+G Q I+ P ILAQQH+ Sbjct: 625 RSIEEIKKDMERERPMDRLLVGDVGYGKTEVALRAAFKAVESGKQVAILVPTTILAQQHF 684 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + + I I++ A ++ LE + G +I+GTH L +++ L L+ Sbjct: 685 DTMNERFEGYPIATGILSRFQTGAQVKETLEGLKDGSVDVIVGTHRLLSKDVEFKDLGLL 744 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 ++DE+ RFGV+ + ++ + + VL +TATPIPRTL ++ +G D+S I P R PI Sbjct: 745 VIDEEQRFGVKHKERIKELKSQVDVLTLTATPIPRTLNMSMIGVRDLSVIETPPTNRYPI 804 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518 +T ++ N + E + + + +++ +++ + VV +L + + Sbjct: 805 QTYVMEEN-AGAIREGIMREMRRNGQVFYLHNRVQ-----DIEKVVAEIEALVPE--ARV 856 Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578 IHG+M++ E ++ F G +L+ TT+IE GID+ +A+ + +ENA+H GL+QL+Q Sbjct: 857 GYIHGQMTEKQLEDILFEFIAGEYDVLVTTTIIETGIDIPNANTLFVENADHMGLSQLYQ 916 Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEI 633 LRGR+GR ++ LY L++ RL +K+ TE GF IA DL R G + Sbjct: 917 LRGRIGRSSRVAYAYFLYQKNRVLTELGEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 976 Query: 634 LGIKQSG 640 LG +Q G Sbjct: 977 LGKQQHG 983 >gi|240144343|ref|ZP_04742944.1| transcription-repair coupling factor [Roseburia intestinalis L1-82] gi|257203687|gb|EEV01972.1| transcription-repair coupling factor [Roseburia intestinalis L1-82] Length = 1176 Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 142/406 (34%), Positives = 226/406 (55%), Gaps = 15/406 (3%) Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 QE AI+ +DM M R++ GDVG GKT +A+ A AV+ G Q + P ILAQ Sbjct: 630 DQELAIEATKKDMESTKIMDRLICGDVGYGKTEIAIRAAFKAVQDGKQVAFLVPTTILAQ 689 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 QHY + ++ + ++++ A ++K +E + G IIIGTH L + Y L Sbjct: 690 QHYNNFVQRMKDFPVNIDLLCRFRSSAEQKKTVEALKKGSVDIIIGTHRLLSKDVVYKDL 749 Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 L+I+DE+ RFGV + K+ Q T VL +TATPIPRTL ++ +G D+S + E P R Sbjct: 750 GLLIIDEEQRFGVTHKEKIKQLKTNIDVLTLTATPIPRTLHMSLIGIRDMSVLEEPPMDR 809 Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 PI+T ++ N + V E + +S G +AY++ ++ E V + L Sbjct: 810 VPIQTYVMEYNE-ELVREAISREISRGGQAYYVYNRVRE-----IADVAAKIAELVPE-- 861 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 +++A HG+M + + E++M F NG +L++TT+IE G+D+ + + +II +A++ GL+Q Sbjct: 862 ANVAYAHGQMKETELENIMYRFINGEIDVLVSTTIIETGLDISNVNTMIIHDADNMGLSQ 921 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGRVGR + L+Y L + + RL+ +K TE GF IA DL+ R Sbjct: 922 LYQLRGRVGRSNRTAYAFLMYRRDKMLKEIAEKRLAAIKEYTELGSGFKIAMRDLEIRGA 981 Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676 G +LG +Q G + + +L+ +L A K+AK + + TS+ Sbjct: 982 GNLLGAEQHGHMEAV--GYDLYCKMLNEAVKEAKGMDVAESFDTSI 1025 >gi|148239816|ref|YP_001225203.1| transcription-repair coupling factor [Synechococcus sp. WH 7803] gi|147848355|emb|CAK23906.1| Transcription-repair coupling factor [Synechococcus sp. WH 7803] Length = 1180 Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 138/422 (32%), Positives = 228/422 (54%), Gaps = 22/422 (5%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G V+G ++ + P+ PT Q A ++ +DM + M R++ GDVG GKT VA+ Sbjct: 589 GFAFPVDGPWQSELEESFPYEPTPDQLKATAEVKKDMEKSQPMDRLVCGDVGFGKTEVAI 648 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A+ A+ AG Q ++AP +LAQQH+ + + I V ++ R+ LE + Sbjct: 649 RAIFKAITAGRQVAMLAPTTVLAQQHWRTLSERFAPYPIKVALLNRFRTAGERKSILEGL 708 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 G ++GTH L S + KL L++VDE+ RFGV Q+ K+ VL ++ATPI Sbjct: 709 KKGTIDAVVGTHQLLSKSTAFDKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPI 768 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491 PRTL ++ G ++S IT P R+PIKT + ++ + + ++ L G + +++ P+ Sbjct: 769 PRTLYMSLSGVREMSLITTPPPLRRPIKTHLAALDE-EAIRSAIRQELDRGGQVFYVVPR 827 Query: 492 IE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549 +E E + R ++ L + HG+M++ + ES M +F G +++ TT Sbjct: 828 VEGIEDVAAQLRQMLPGLKLL---------VAHGQMAEGELESAMVAFNGGEADVMLCTT 878 Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYT 606 ++E G+D+ + I+IE+A FGLAQL+QLRGRVGR I + L++P LS+ + Sbjct: 879 IVESGLDIPRVNTILIEDAHRFGLAQLYQLRGRVGR-SGIQAHAWLFYPGNASLSEAARQ 937 Query: 607 RLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIAR 660 RL ++ G+ +A D++ R G +LG++QSG + F + L +SL EI Sbjct: 938 RLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQG 997 Query: 661 KD 662 +D Sbjct: 998 QD 999 >gi|119478459|ref|ZP_01618444.1| transcription-repair coupling protein Mfd [marine gamma proteobacterium HTCC2143] gi|119448545|gb|EAW29792.1| transcription-repair coupling protein Mfd [marine gamma proteobacterium HTCC2143] Length = 1152 Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 143/384 (37%), Positives = 208/384 (54%), Gaps = 25/384 (6%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T QESAIK ++ D+ R++ GDVG GKT VA+ A AV Q I+ Sbjct: 598 GFPFEETPDQESAIKAVVADLQSDAATDRLVCGDVGFGKTEVAMRAAFIAVHNSKQVAIL 657 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH+E K + + +++++ A + L + A G+ I+IGTH L Q Sbjct: 658 VPTTLLAQQHFESFKDRFADWPVSIDVLSRFRSSAEQADVLAKTAAGKIDILIGTHKLLQ 717 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 ++Y L L+I+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D+S Sbjct: 718 KDVKYSDLGLLIIDEEHRFGVRQKEQLKSLRSEVDILTLTATPIPRTLNMAISGMRDLSI 777 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSV 503 I PA R +KT + + I E I L+ +L G + Y++ +++ E+ +++ Sbjct: 778 IATPPARRLSVKTFVRQSDNATIKEAI--LREIL-RGGQVYYLHNEVKTIEQTSRELQAL 834 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 V I I HG+M + E VM F + LL+ TT+IE GIDV A+ I Sbjct: 835 VPEVR---------IGIGHGQMPERQLEQVMSDFYHKRFNLLLCTTIIETGIDVPSANTI 885 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN----SYTRLSVLKNTED--- 616 +I A+ FGLAQLHQLRGRVGR + +L P +KN + RL + E+ Sbjct: 886 LINRADKFGLAQLHQLRGRVGRSHHQAYAYML--TPDAKNMTGDAEKRLEAISQAEELGS 943 Query: 617 GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 944 GFTLATHDLEIRGAGELLGDGQSG 967 >gi|319891456|ref|YP_004148331.1| Transcription-repair coupling factor [Staphylococcus pseudintermedius HKU10-03] gi|317161152|gb|ADV04695.1| Transcription-repair coupling factor [Staphylococcus pseudintermedius HKU10-03] gi|323465374|gb|ADX77527.1| transcription-repair coupling factor [Staphylococcus pseudintermedius ED99] Length = 1170 Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 147/413 (35%), Positives = 226/413 (54%), Gaps = 23/413 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I +I DM + M R+L GDVG GKT VA+ A AV +G Q + Sbjct: 617 DFPYDLTDDQAKSIIEIKNDMESQRPMDRLLCGDVGYGKTEVAVRAAFKAVMSGKQVAFL 676 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + ++ + + +++ R+ E + G I++GTH L Sbjct: 677 VPTTILAQQHYETLIERMRDFPVEIHLMSRFRTPKEVRETKEGLKSGFVDIVVGTHKLLG 736 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++Y L L+IVDE+ RFGV+ + K+ Q VL +TATPIPRTL ++ LG D+S Sbjct: 737 KTVEYKDLGLLIVDEEQRFGVRHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSI 796 Query: 448 ITEKPAGRKPIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ ++ S+ E Sbjct: 797 IETPPENRFPVQTYVLEQNTNFIKEALER---ELSRDGQVFYLYNRVS--------SIYE 845 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L +SI + HG++ + D E M F NG +L+ TT+IE G+DV +A+ +I Sbjct: 846 KREQLQMLMPDASIGVAHGQLPERDLEETMLDFINGEYDILVTTTIIETGVDVPNANTLI 905 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFL 619 IE+A+ FGL+QL+QLRGRVGR I L+ + L++ + RL +K TE GF Sbjct: 906 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHATNRVLNEVAEERLQAIKEFTELGSGFK 965 Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQP-ELHDSLLEIARKDAKHILTQDP 671 IA DL R G +LG +Q G F+ + +L+ +LE A + + I + P Sbjct: 966 IAMRDLNIRGAGNLLGKQQHG---FIDSVGFDLYSQMLEEAVNEKRGIKEETP 1015 >gi|160871679|ref|ZP_02061811.1| transcription-repair coupling factor [Rickettsiella grylli] gi|159120478|gb|EDP45816.1| transcription-repair coupling factor [Rickettsiella grylli] Length = 1149 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 147/388 (37%), Positives = 219/388 (56%), Gaps = 23/388 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q PF+ T+ Q AI+ ++QDM+ + M R++ GDVG GKT VA+ A AV + Sbjct: 598 QAFAAQFPFTETQDQAQAIQQVIQDMTSERAMDRLVCGDVGFGKTEVAMRAAFLAVHSNK 657 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++ P +LAQQHY+ F ++ + + VE+I+ A ++K LER+ G+ I++G Sbjct: 658 QVALLVPTTLLAQQHYQNFCDRFAE-WPVHVEMISRFRSIASQKKILERLQQGKIDILVG 716 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L +++ +L L+I+DE+HRFGVQQ+ +L +L +TATPIPRTL + G Sbjct: 717 THKLLSKELKFPRLGLLIIDEEHRFGVQQKERLKALRAQVDILSLTATPIPRTLNMALSG 776 Query: 442 DIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKE 497 ++S I PA R IKT + N I E I R L G + Y++ Q++ EK Sbjct: 777 LRELSIIATPPARRLSIKTFVQQRNTRLIREAILR---ELFRGGQVYFLHNQVDSIEKVA 833 Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557 ++V + I + HG++ + E VM F + +L+ TT+IE GIDV Sbjct: 834 RELEALVPE---------ARIQVAHGQLRESQLERVMADFYHQRFNVLLCTTIIESGIDV 884 Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE 615 A+ III+ A+ FGLAQLHQLRGRVGR + L+ PP ++ ++ RL + E Sbjct: 885 PSANTIIIDRADKFGLAQLHQLRGRVGRSHHQAYAYLMTPPPEMITADAMKRLEAFISLE 944 Query: 616 D---GFLIAEEDLKQRKEGEILGIKQSG 640 D GF +A DL+ R GE+LG +QSG Sbjct: 945 DLGAGFSLAMHDLEIRGAGEVLGEQQSG 972 >gi|118587141|ref|ZP_01544570.1| transcription-repair coupling factor [Oenococcus oeni ATCC BAA-1163] gi|118432420|gb|EAV39157.1| transcription-repair coupling factor [Oenococcus oeni ATCC BAA-1163] Length = 1189 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 140/434 (32%), Positives = 235/434 (54%), Gaps = 26/434 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W R A E +A ++ L +++ E+G +V+ + Q+ + T Q Sbjct: 584 DWAKTKRRVTAKVEDIADELIALYSKRE--GEVGYAFSVDDQRQQEFDDGFAYPETVDQL 641 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +IK+I DM K M R+L GDVG GKT VA A A+E Q + P IL+QQHY Sbjct: 642 RSIKEIKSDMENKKPMDRLLVGDVGFGKTEVAFRAAFKAIEDHKQVAFLTPTTILSQQHY 701 Query: 339 EF-IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 + I++++ +I + +++ ++ ++++ Q ++IGTH L + + L L Sbjct: 702 QTAIERFSDFPEIKIAMLSRFNTAGQNKEVIKKLKAHQLDMVIGTHRLLSKDVAFDDLGL 761 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +I+DE+ RFGV+ + K+ Q VL +TATPIPRTL + +G D+S + PA R P Sbjct: 762 LIIDEEQRFGVKHKEKIKQLRANVDVLTLTATPIPRTLDMALVGARDLSVLETPPANRFP 821 Query: 458 IKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEH 513 I+T ++ N I IE+ LS G + +++ +++ E+ + +V N Sbjct: 822 IQTYVLEENWPVIAYAIEK---ELSRGGQTFFLHNRVQDIERTVGEIQRIVPDAN----- 873 Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 + IHG+M++ E V+ F NG +L+ TT+IE G+D+ +A+ +I+EN+E FGL Sbjct: 874 ----VGYIHGQMNETQLEDVLMDFLNGIYDVLVTTTIIETGVDIPNANTLIVENSERFGL 929 Query: 574 AQLHQLRGRVGRGEEISSCILLY---HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQ 627 +QL+QLRGR+GR ++ Y P ++++ RL +++ TE GF +A DL Sbjct: 930 SQLYQLRGRIGRSNRLAYAYFTYPGDRQP-TEDAQKRLEAIRDFTELGSGFKLAMRDLSI 988 Query: 628 RKEGEILGIKQSGM 641 R G++LG +Q G Sbjct: 989 RGAGDLLGKQQHGF 1002 >gi|318041677|ref|ZP_07973633.1| transcription-repair coupling factor [Synechococcus sp. CB0101] Length = 1185 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 140/422 (33%), Positives = 226/422 (53%), Gaps = 22/422 (5%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G +G ++ + P+ PT Q AI D+ +DM + M R++ GDVG GKT VA+ Sbjct: 594 GFCFPADGPWQSELEESFPYEPTPDQLKAIADVKRDMEKPQPMDRLVCGDVGFGKTEVAI 653 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A+ AV AG Q ++AP +LAQQH+ + + I V ++ R+ E + Sbjct: 654 RAIFKAVTAGKQVAMLAPTTVLAQQHWRSLSERFAPYPIKVSLLNRFRTAGERKAIQEGL 713 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 G +++GTH L + +L L++VDE+ RFGV Q+ K+ VL ++ATPI Sbjct: 714 GEGTVDVVVGTHQLLGKGTAFKQLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPI 773 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491 PRTL ++ G ++S IT P R+PIKT + ++ + V ++ L G + +++ P+ Sbjct: 774 PRTLYMSLSGVREMSLITTPPPLRRPIKTHLAALDE-EAVRSAIRQELDRGGQIFYVVPR 832 Query: 492 IE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549 +E E R +V L + HG+M++ + ES M +F G L++ TT Sbjct: 833 VEGIEDVAEGLRLMVPGLRLL---------VAHGQMAEGELESAMVAFNAGEADLMLCTT 883 Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYT 606 ++E G+D+ + I+IE+A FGLAQL+QLRGRVGR I + L++P LS+ + Sbjct: 884 IVESGLDIPRVNTILIEDAHKFGLAQLYQLRGRVGR-SGIQAHAWLFYPGDASLSEAARQ 942 Query: 607 RLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIAR 660 RL ++ G+ +A D++ R G +LG++QSG + F + L +SL EI Sbjct: 943 RLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQG 1002 Query: 661 KD 662 +D Sbjct: 1003 QD 1004 >gi|182414804|ref|YP_001819870.1| transcription-repair coupling factor [Opitutus terrae PB90-1] gi|177842018|gb|ACB76270.1| transcription-repair coupling factor [Opitutus terrae PB90-1] Length = 1205 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 148/412 (35%), Positives = 221/412 (53%), Gaps = 19/412 (4%) Query: 238 IALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 +A L+R Q +E G + ++ + PF+ T+ Q AI++ DM + M Sbjct: 578 LAAELLRIQAAREAQPGFAFPPDTTWQKEFEASFPFTETRDQLRAIEETKTDMERTQPMD 637 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++ GDVG GKT VA+ A AV+ G Q ++ P +LAQQH ++ I +E++ Sbjct: 638 RLICGDVGFGKTEVAIRAAFKAVQGGRQVAMLVPTTVLAQQHLNTFRERMAGYPIAIEMV 697 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 + +A ++K L A GQ I+IGTH + Q +++ L LVI+DE+ RFGV+ + Sbjct: 698 SRFRSRADQKKILTATAAGQVDILIGTHRVLQHDVKFRDLGLVIIDEEQRFGVKHKEVFK 757 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE--VIE 473 Q + VL M+ATPIPRTL L G D+S I P R PI+TV + DE VI+ Sbjct: 758 QMRSTVDVLSMSATPIPRTLYLALTGARDLSVIETAPTNRHPIQTV---VKTYDEKLVID 814 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 ++ L G + +++ +IE V R L T I + HG+M D E V Sbjct: 815 AVRHELRRGGQVFYLHNRIE-----TINLVAARLRELMPDVT--IGVGHGQMEAADLEEV 867 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR--GEEISS 591 M F G +LL+ TT+IE G+D+ + + I+IE A+ FGL+QL+QLRGRVGR + + Sbjct: 868 MTEFVAGRYQLLVCTTIIESGLDIPNCNTILIEGADRFGLSQLYQLRGRVGRFKHQAYAY 927 Query: 592 CILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 +L H L + RL+ ++ GF IA DL+ R G +LG +QSG Sbjct: 928 LLLHRHTRLLDVARQRLTAMRQHTQLGAGFRIAMRDLELRGAGNLLGAQQSG 979 >gi|83816849|ref|YP_444216.1| transcription-repair coupling factor [Salinibacter ruber DSM 13855] gi|83758243|gb|ABC46356.1| transcription-repair coupling factor [Salinibacter ruber DSM 13855] Length = 1142 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 140/379 (36%), Positives = 212/379 (55%), Gaps = 18/379 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q A K + +DM + M R++ GDVG GKT VA+ A AV+ G Q ++ P Sbjct: 575 FEDTPDQAEATKAVKRDMEEPVPMDRLVCGDVGFGKTEVAVRAAFKAVQDGKQVAMLVPT 634 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 ILAQQH++ + + + VE+++ + + K LE++ GQ I+IGTH + D I Sbjct: 635 TILAQQHHDTFSERMERFPVNVEVLSRFRSRTEQSKVLEKLEKGQVDILIGTHRITSDDI 694 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + L L++VDE+ RFGV+ + KL + A L +TATPIPRTL + LG D+S I Sbjct: 695 TFDDLGLLVVDEEQRFGVKTKEKLRKMREAIDTLTLTATPIPRTLQFSLLGARDLSLIET 754 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R+PI T I+ DE + R +V S G + ++I +++ V E Sbjct: 755 PPPNRQPINT---EIHTFDEDVIRDAIVYETSRGGQVFFIHNRVK-----TIHEVAEMVR 806 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 ++ + + + HG+MS + E VM F N +L++T++IE G+D+ +A+ +II +A Sbjct: 807 AMVPNV--RVGVGHGQMSASELEDVMLDFVNEKLDVLVSTSIIENGLDISNANTMIINHA 864 Query: 569 -EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAE 622 EHFGL++LHQLRGRVGR + + C LL L+ ++ RL ++ D GF IA Sbjct: 865 GEHFGLSELHQLRGRVGRSQRKAFCHLLVPSVHGLTDDARERLKAVEQFSDLGSGFDIAM 924 Query: 623 EDLKQRKEGEILGIKQSGM 641 DL R G +LG +QSG Sbjct: 925 RDLDIRGAGSLLGAEQSGF 943 >gi|46447155|ref|YP_008520.1| transcription-repair coupling factor [Candidatus Protochlamydia amoebophila UWE25] gi|46400796|emb|CAF24245.1| probable transcription-repair coupling factor mfd [Candidatus Protochlamydia amoebophila UWE25] Length = 1101 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 143/408 (35%), Positives = 221/408 (54%), Gaps = 18/408 (4%) Query: 242 LMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L++ ++EI G ++ Q PFS T+ Q +AI I QDM K M R++ Sbjct: 549 LLKSYAEREIKEGFAYPIDSADLQSFEGEFPFSETEDQLAAISSIKQDMMSKKAMDRLIC 608 Query: 300 GDVGSGKTLVALIAMAAAVEAGG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 GDVG GKT VA+ A AV G Q ++ P +LA QH++ N I + I++ Sbjct: 609 GDVGYGKTEVAMRAAFKAVTDGAKQVAVLVPTTVLAMQHFDNFLDRMANFPINIGILSRF 668 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 Q ++ LE IA+G I+IGTH + + +++ L LVI+DE+ RFGV+ + L + Sbjct: 669 RTQKQIQETLEGIANGFIDIVIGTHRIIGEDVKFKDLGLVIIDEEQRFGVKAKEHLKKIK 728 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LKV 477 L ++ATPIPRTL ++ +G D+S I P R P KT+I + D++I+ L Sbjct: 729 IGVDCLTLSATPIPRTLYMSLIGARDMSVINTPPQDRLPTKTIITEPS--DQIIQNALLR 786 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537 LS +A+ I ++E + SV R SL + + + HG+M + ++ +F Sbjct: 787 ELSRDGQAFVIHNRVE-----SIYSVSNRIKSLLPQ--ARVLVAHGQMHADEIDATFHAF 839 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL-- 595 K+G +L+ATT++E G+D+ +A+ I+I+ A+HFGLA L+QLRGRVGR + L Sbjct: 840 KSGQADILVATTIVENGVDIPNANTILIDRADHFGLAALYQLRGRVGRWNRRAYAYFLVP 899 Query: 596 ---YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 P L++ LS G +A DL+ R G+ILG++QSG Sbjct: 900 NLRVMPELTRKRLQALSEASGYGSGMKVAMRDLEIRGAGDILGLEQSG 947 >gi|15612632|ref|NP_240935.1| transcription-repair coupling factor (TRCF) [Bacillus halodurans C-125] gi|10172681|dbj|BAB03788.1| transcription-repair coupling factor (TRCF) [Bacillus halodurans C-125] Length = 1181 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 145/429 (33%), Positives = 227/429 (52%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W R + E +A + L ++ K G +G + + P+ T+ Q Sbjct: 573 DWKKVKRRVQSSVEDIADDLIKLYAEREASK--GFAFAPDGPEQAEFEASFPYQETEDQL 630 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 AI++I +DM ++ M R+L GDVG GKT VA+ A A+ G Q I+ P ILAQQH+ Sbjct: 631 RAIQEIKEDMEKERPMDRLLCGDVGYGKTEVAIRAAFKAIMNGKQVAILVPTTILAQQHF 690 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I++ + I + +++ + + + L+ + G +++GTH L +Q+ L L+ Sbjct: 691 ETIQERFADYPINIGVLSRFRSRKEQSQTLKGLKAGSVDLVVGTHRLLSKDVQFKDLGLL 750 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV + K+ Q VL +TATPIPRTL ++ LG D+S I P R P+ Sbjct: 751 IVDEEQRFGVTHKEKIKQLKANIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 810 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T ++ N + E IER LS G + Y++ ++E N + + L Sbjct: 811 QTYVVEYNSPLVREAIER---ELSRGGQVYFLYNRVE-----NIERMANEISMLVPDARV 862 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 S A HG+M + + ES+M +F G +L+ TT+IE G+D+ + + +II A+ GL+QL Sbjct: 863 SFA--HGQMKESELESIMLAFLEGESDVLVTTTIIETGVDIPNVNTLIIHGADKMGLSQL 920 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +Q+RGRVGR ++ Y LS+ + RL +K TE GF IA DL R G Sbjct: 921 YQIRGRVGRSNRVAYAYFTYQRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLAIRGAG 980 Query: 632 EILGIKQSG 640 +LG +Q G Sbjct: 981 NLLGAQQHG 989 >gi|224540214|ref|ZP_03680753.1| hypothetical protein BACCELL_05127 [Bacteroides cellulosilyticus DSM 14838] gi|224518176|gb|EEF87281.1| hypothetical protein BACCELL_05127 [Bacteroides cellulosilyticus DSM 14838] Length = 1131 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 144/410 (35%), Positives = 220/410 (53%), Gaps = 19/410 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + Q ++E G +V+ + +++ + + T Q A D+ DM M R++ Sbjct: 532 LIRLYSQRREEKGFQFSVDSFLQRELEASFIYEDTPDQSKATADVKADMESNRPMDRLVC 591 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LA QH++ K ++ VE ++ Sbjct: 592 GDVGFGKTEVAVRAAFKAVADNKQVAVLVPTTVLAYQHFQTFKDRLKDLPCKVEYLSRAR 651 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A + ++ +A G +I+IGTH + IQ+ L L+I+DE+ +FGV + KL Q Sbjct: 652 TAAQAKAVIKGLAAGDVNILIGTHRILGKDIQFKDLGLLIIDEEQKFGVSVKEKLRQLKV 711 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478 L MTATPIPRTL + +G D+S I P R PI+T + N +EVI + + Sbjct: 712 NVDTLTMTATPIPRTLQFSLIGARDLSVIQTPPPNRYPIQTEVHTFN--EEVIADAINFE 769 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537 +S + + + +I E ++++ER H IAI HG+M + E ++ F Sbjct: 770 MSRNGQVFLVNNRISNLPE--LKAMIER------HIPDCRIAIGHGQMEPTELEKIIFGF 821 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 N +LIATT+IE GID+ +A+ III A++FGL+ LHQ+RGRVGR + + C LL Sbjct: 822 VNYDYDVLIATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-A 880 Query: 598 PPLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 PPLS + RL ++N D G IA +DL R G +LG +QSG Sbjct: 881 PPLSSLTPEARRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 930 >gi|260577719|ref|ZP_05845654.1| transcription-repair coupling factor [Corynebacterium jeikeium ATCC 43734] gi|258604114|gb|EEW17356.1| transcription-repair coupling factor [Corynebacterium jeikeium ATCC 43734] Length = 1243 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 135/429 (31%), Positives = 224/429 (52%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W + R+ +AG++ L +Q G + +++ PF+ T+ Q Sbjct: 618 DWKNTKRKARGAVREIAGELVQLYASRQAAP--GYAFAADTPWQREMEDAFPFTETEDQY 675 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI+ + DM + M R++ GDVG GKT VA+ A AV++G Q ++ P +LAQQHY Sbjct: 676 NAIEAVKADMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQSGKQVAVLVPTTLLAQQHY 735 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + Q+ ++ ++ A +K + +A G I+IGTH L Q + + L L+ Sbjct: 736 NTFSERMQDFPTTIKELSRFTTPAESKKVIAGMADGTVDIVIGTHRLLQTGVHWKNLGLI 795 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + + T VL M+ATPIPRTL ++ G ++S I P R P+ Sbjct: 796 IVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPV 855 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516 T + V ++ L + +++ ++ E+ ++ R +V + Sbjct: 856 LT-YVGAQEDKHVAAAIRRELLRDGQVFYVHNKVRSIEQTAADIRRLVPE---------A 905 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 + + HG+MS+ E+ + F + +L+ TT++E G+D+ +A+ +I+ENA H GL+QL Sbjct: 906 RVVVAHGQMSEEQLETTVKGFWDREFDVLVCTTIVETGLDIANANTLIVENAHHMGLSQL 965 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 HQLRGRVGR E LY L++ SY RL+ + D G +A +DL+ R G Sbjct: 966 HQLRGRVGRSRERGYAYFLYPKGEVLTETSYDRLTTIAQNNDLGAGMAVAMKDLEMRGAG 1025 Query: 632 EILGIKQSG 640 +LG +QSG Sbjct: 1026 NVLGAEQSG 1034 >gi|118578938|ref|YP_900188.1| transcription-repair coupling factor [Pelobacter propionicus DSM 2379] gi|118501648|gb|ABK98130.1| transcription-repair coupling factor [Pelobacter propionicus DSM 2379] Length = 1177 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 156/490 (31%), Positives = 261/490 (53%), Gaps = 40/490 (8%) Query: 220 WT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 W S + R A +EL AG++ + ++Q + G + ++ ++ + + T Q Sbjct: 580 WEKSKGKARKAIEEL-AGELLEIYAKRQICE--GFSFSPPDEMYREFEASFAWEETPDQL 636 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 SAI D+L DM M R++ GDVG GKT VAL A G Q ++ P ILAQQH+ Sbjct: 637 SAINDVLADMQHSRPMDRLVCGDVGYGKTEVALRGAFKAALDGKQVGVLVPTTILAQQHF 696 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + + + VE ++ ++ LER+ G+ I+IGTH L Q + + L L+ Sbjct: 697 ETFHERLKEYPVRVEALSRFRTPKEQKAILERLKKGEIDIVIGTHRLLQKDVAFKDLGLL 756 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L V+ +TATPIPRTL ++ +G D+S I P R + Sbjct: 757 IIDEEQRFGVKDKERLKAFRAVVDVMTLTATPIPRTLYMSMMGIRDLSIIDTPPVDRLAV 816 Query: 459 KTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 KT+ + R E + R ++ L G + +++ +++ K+ ++V Sbjct: 817 KTI---VARFSEELVREAIMRELRRGGQVFFVHNRVQTIAKRAELIAALVPE-------- 865 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA+ HG+M + + E VM F +G LLI TT+IE G+D+ +A+ +I+++A+ FGL+ Sbjct: 866 -AKIAVGHGQMGEQELEKVMLGFMHGETNLLICTTIIESGLDIPNANTLIVDHADRFGLS 924 Query: 575 QLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629 QL+QLRGRVGR + LL L+ ++ RL +L++ + GF IA D++ R Sbjct: 925 QLYQLRGRVGRSSQRGYAYLLIPGEGSLTSDARERLKILQDISELGAGFRIATHDMEIRG 984 Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ-DPDL----------TSV 676 G++LG +QSG + EL++ +LE I R + ++ Q +P++ T V Sbjct: 985 AGDMLGSRQSGT--VIEIGFELYNQMLEETICRMRGEEMIEQVEPEINLKVPAFIPETYV 1042 Query: 677 RGQSIRILLY 686 R R+++Y Sbjct: 1043 RDTGQRLVIY 1052 >gi|294505877|ref|YP_003569935.1| transcription-repair coupling factor [Salinibacter ruber M8] gi|294342205|emb|CBH22983.1| Transcription-repair coupling factor [Salinibacter ruber M8] Length = 1298 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 141/379 (37%), Positives = 213/379 (56%), Gaps = 18/379 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q A K + +DM + M R++ GDVG GKT VA+ A AV+ G Q ++ P Sbjct: 731 FEDTPDQAEATKAVKRDMEEPVPMDRLVCGDVGFGKTEVAVRAAFKAVQDGKQVAMLVPT 790 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 ILAQQH++ + + + VE+++ + + K LE++ GQ I+IGTH + D I Sbjct: 791 TILAQQHHDTFSERMERFPVNVEVLSRFRSRTEQSKVLEKLEKGQVDILIGTHRITSDDI 850 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + L L++VDE+ RFGV+ + KL + A L +TATPIPRTL + LG D+S I Sbjct: 851 TFDDLGLLVVDEEQRFGVKTKEKLRKMREAIDTLTLTATPIPRTLQFSLLGARDLSLIET 910 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R+PI T I+ DE + R +V S G + ++I +++ E V E Sbjct: 911 PPPNRQPINT---EIHTFDEDVIRDAIVYETSRGGQVFFIHNRVKTIHE-----VAEMVR 962 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 ++ + + + HG+MS + E VM F N +L++T++IE G+D+ +A+ +II +A Sbjct: 963 AMVPNV--RVGVGHGQMSASELEDVMLDFVNEKLDVLVSTSIIENGLDISNANTMIINHA 1020 Query: 569 -EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAE 622 EHFGL++LHQLRGRVGR + + C LL L+ ++ RL ++ D GF IA Sbjct: 1021 GEHFGLSELHQLRGRVGRSQRKAFCHLLVPSVHGLTDDARERLKAVEQFSDLGSGFDIAM 1080 Query: 623 EDLKQRKEGEILGIKQSGM 641 DL R G +LG +QSG Sbjct: 1081 RDLDIRGAGSLLGAEQSGF 1099 >gi|288554664|ref|YP_003426599.1| transcription-repair coupling factor [Bacillus pseudofirmus OF4] gi|288545824|gb|ADC49707.1| transcription-repair coupling factor (TRCF) [Bacillus pseudofirmus OF4] Length = 1180 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 138/378 (36%), Positives = 212/378 (56%), Gaps = 17/378 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q A+++I +DM ++ M R+L GDVG GKT VA+ A A+ G Q I+ P Sbjct: 623 PYQETEDQIRAVEEIKEDMEKERPMDRLLCGDVGYGKTEVAIRAAFKAIMDGKQVAILVP 682 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHYE IK+ + I + +++ + + + L+ + G +I+GTH L Sbjct: 683 TTILAQQHYETIKERFSDFPINIGVLSRFRSRKEQTETLKGLKAGSVDLIVGTHRLLSKD 742 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I + L L+IVDE+ RFGV + K+ Q VL +TATPIPRTL ++ LG D+S I Sbjct: 743 IVFKDLGLLIVDEEQRFGVTHKEKIKQLKANIDVLTLTATPIPRTLHMSMLGVRDLSVIE 802 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R P++T ++ N I E IER L+ G + Y++ ++E + + E+ Sbjct: 803 TPPENRFPVQTYVVEYNASLIREAIER---ELTRGGQVYFLYNRVE-----DIERMTEQI 854 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + L S A HG+M++ + ES+M F G +L+ TT+IE G+D+ + + +II + Sbjct: 855 SMLVPDAKVSFA--HGQMNERELESIMLDFLEGNSDVLVTTTIIETGVDIPNVNTLIIND 912 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622 A+ GL+QL+Q+RGRVGR ++ Y L++ + RL +K TE GF IA Sbjct: 913 ADKMGLSQLYQIRGRVGRSNRVAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGSGFKIAM 972 Query: 623 EDLKQRKEGEILGIKQSG 640 DL R G +LG +Q G Sbjct: 973 RDLTIRGAGNLLGAQQHG 990 >gi|315499869|ref|YP_004088672.1| transcription-repair coupling factor [Asticcacaulis excentricus CB 48] gi|315417881|gb|ADU14521.1| transcription-repair coupling factor [Asticcacaulis excentricus CB 48] Length = 1168 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 161/479 (33%), Positives = 255/479 (53%), Gaps = 35/479 (7%) Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272 RKAK A+E+L E+ G I L R ++G I+ + + P+ Sbjct: 573 RKAK-------AKEKLR--EMADGLIQLAAARAL---KVGQQIDPPSGLYDEFCAQFPYE 620 Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332 T+ Q +AI D+L D+S+ + M R++ GDVG GKT VAL A +G Q I+ P + Sbjct: 621 ETEDQLNAIHDVLDDLSKGHPMDRLICGDVGFGKTEVALRAAFVVAMSGQQVAIICPTTL 680 Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392 LA+QH++ + Q I V ++ + + + + + G+ ++IGTHAL + + + Sbjct: 681 LARQHFKTFSQRFQGWPIRVRHLSRMVTRKEADETRDGLKSGEVEVVIGTHALLSEQVGF 740 Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452 L LVIVDE+ FGV+ + KL H+L ++ATPIPRTL + G ++S I P Sbjct: 741 KDLGLVIVDEEQHFGVKHKEKLKAFRADVHMLTLSATPIPRTLQMALSGIREMSIIATPP 800 Query: 453 AGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 R ++T ++P + I E + R K G +AY++ P++++ + +ERF L Sbjct: 801 VDRLAVRTYVLPFDAVSIREALLREKY---RGGQAYYVVPRLKDLPD------LERF--L 849 Query: 511 HEHFTSSIAII-HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 E I+ HG+M+ E VM +F +G +L+ATT++E G+DV A+ +I+ A+ Sbjct: 850 REQVPEVKFIVGHGQMTPTQLEEVMTAFYDGQYDVLLATTIVESGLDVPTANTLIVHRAD 909 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEED 624 FGLAQL+Q+RGRVGR + + L P LS+ S RL VL++ ++ GF +A D Sbjct: 910 MFGLAQLYQIRGRVGRSKTRAFAYLTTQPHQILSEASEKRLKVLQSLDNLGAGFQLASHD 969 Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683 L R G +LG +QSG + + EL+ +LE A + + D T RG S +I Sbjct: 970 LDIRGGGNLLGNEQSGHIREIGV--ELYQQMLEDAVNELRS--RADEPATDNRGWSPQI 1024 >gi|53723684|ref|YP_103135.1| transcription-repair coupling factor [Burkholderia mallei ATCC 23344] gi|121600246|ref|YP_993304.1| transcription-repair coupling factor [Burkholderia mallei SAVP1] gi|52427107|gb|AAU47700.1| transcription-repair coupling factor [Burkholderia mallei ATCC 23344] gi|121229056|gb|ABM51574.1| transcription-repair coupling factor [Burkholderia mallei SAVP1] Length = 1157 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 154/432 (35%), Positives = 226/432 (52%), Gaps = 25/432 (5%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q Sbjct: 595 KFADSFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 654 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 +++P +LA+QH + + + + ++ A+ +I G I+IGTH Sbjct: 655 VALLSPTTLLAEQHTQTFADRFADWPVRIAELSRFKTAKEVNAAIAQINEGSVDIVIGTH 714 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443 L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G Sbjct: 715 KLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLR 774 Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESN 499 D S I P R IKT + R +E + R ++ L G + Y++ ++E E +++ Sbjct: 775 DFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKAM 831 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 +V + I I HG+M + + E VM F +L+ TT+IE GIDV Sbjct: 832 LEELVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPS 882 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616 A+ II+ A+ FGLAQLHQLRGRVGR + LL H P L+K + RL ++ E+ Sbjct: 883 ANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEEL 942 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 GF +A DL+ R GE+LG KQSG + Q L+ +L A K K+ ++PDLT Sbjct: 943 GSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLT 998 Query: 675 SVRGQSIRILLY 686 + + I L+ Sbjct: 999 APLAATTEINLH 1010 >gi|266619807|ref|ZP_06112742.1| transcription-repair coupling factor [Clostridium hathewayi DSM 13479] gi|288868593|gb|EFD00892.1| transcription-repair coupling factor [Clostridium hathewayi DSM 13479] Length = 1178 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 137/377 (36%), Positives = 209/377 (55%), Gaps = 15/377 (3%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q AI DM + M R++ GDVG GKT +AL A AV+ Q V + P Sbjct: 628 PYEETEDQLDAIDSTKSDMESRKIMDRLICGDVGYGKTEIALRAAFKAVQDEKQVVYLVP 687 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHY + ++ + V++++ + +K LE + G I+IGTH + Sbjct: 688 TTILAQQHYNTFVQRMKDFPVRVDLMSRFRTPSQVKKTLEDLKRGLVDIVIGTHRVLSKD 747 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +Q+ L L+I+DE+ RFGV + K+ + VL +TATPIPRTL ++ +G D+S + Sbjct: 748 VQFKDLGLLIIDEEQRFGVAHKEKIKKLKENIDVLTLTATPIPRTLHMSLVGIRDMSVLE 807 Query: 450 EKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 E P R PI+T ++ N DE++ E + LS G + Y++ ++ SN V Sbjct: 808 EPPVDRMPIQTYVMEYN--DEMVREAINRELSRGGQVYYVYNRV-----SNIDEVAGHIA 860 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 SL T + A HG+M + + E +M F NG +L+ TT+IE G+D+ +A+ +II++A Sbjct: 861 SLVPEATVTFA--HGQMHEHELERIMFDFVNGEIDVLVCTTIIETGLDIPNANTMIIQDA 918 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623 + GL+QL+QLRGRVGR S L+Y L + + RL ++ TE G IA Sbjct: 919 DRMGLSQLYQLRGRVGRSSRTSYAFLMYKRDKMLREEAEKRLQAIREFTELGSGIKIAMR 978 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R G +LG +Q G Sbjct: 979 DLEIRGAGNVLGAEQHG 995 >gi|300812086|ref|ZP_07092534.1| transcription-repair coupling factor [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496925|gb|EFK31999.1| transcription-repair coupling factor [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 1158 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 140/430 (32%), Positives = 224/430 (52%), Gaps = 19/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW + A E +A + L +++ +K G + +G P+ PT Q Sbjct: 557 EWAKTKKRVAARVEDIADDLIDLYAKREAEK--GFAFSPDGSDQAAFEAAFPYEPTPDQL 614 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 A +I DM + M R+L GDVG GKT VA+ A A+ G Q + P ILAQQHY Sbjct: 615 RATAEIKADMEKAKPMDRLLVGDVGFGKTEVAMRAAFKAICDGKQVAFLVPTTILAQQHY 674 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + IK + + + + QA +K + + G +++GTH + +Q+ L L+ Sbjct: 675 QTIKDRFKGFPVEIASFSRFQGQAESKKIVAGLKDGSIDLVVGTHRILSKDVQFKDLGLL 734 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV + KL Q T VL +TATPIPRTL ++ +G D+S + P R PI Sbjct: 735 IIDEEQRFGVAHKEKLKQLKTNIDVLTLTATPIPRTLHMSMIGIRDLSVMETPPQNRYPI 794 Query: 459 KTVIIPI--NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T ++ + E +R + G + +++ ++ + +E+ V R L + Sbjct: 795 QTYVLEQLPGTVKEACQR---EMQRGGQVFYLHNRVGDIEET-----VARLEQLLPE--A 844 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 IA HG+MS+ E ++ F + +L+ TT+IE GID+ + + +IIE+A+H+GL+QL Sbjct: 845 RIAYAHGQMSENQLEDILSRFLDREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQL 904 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 +QLRGR+GR ++ LY P L++ RL +++ + GF IA DL R G Sbjct: 905 YQLRGRIGRSVRLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGAGFKIAMRDLSIRGAG 964 Query: 632 EILGIKQSGM 641 +LG +Q G Sbjct: 965 NMLGAQQHGF 974 >gi|166031178|ref|ZP_02234007.1| hypothetical protein DORFOR_00864 [Dorea formicigenerans ATCC 27755] gi|166029025|gb|EDR47782.1| hypothetical protein DORFOR_00864 [Dorea formicigenerans ATCC 27755] Length = 1114 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 143/432 (33%), Positives = 236/432 (54%), Gaps = 25/432 (5%) Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI-PFSPTKS 276 EWT + A+ R A E+ + L R+ + G + E + QK + P+ T+ Sbjct: 513 EWTKTKAKVRGAVKEIAKDLVELYAARQN---QDGF-VYGEDTVWQKEFEEMFPYEETED 568 Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336 Q AI + +DM M R++ GDVG GKT +A+ A AV+ Q V + P ILAQQ Sbjct: 569 QLLAINAVKKDMESHKIMDRLICGDVGYGKTEIAIRAAFKAVQENKQVVYLVPTTILAQQ 628 Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 HY + ++ + V+++ A +R ++ + G I++GTH + D I+Y L Sbjct: 629 HYNTFCQRMKDFPVRVDLMCRFRTPAQQRDTIQNLKRGLVDIVVGTHRVLSDDIEYKDLG 688 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 L+I+DE+ RFGVQ + K+ + VL +TATPIPRTL ++ +G D+S + E P R Sbjct: 689 LLIIDEEQRFGVQHKEKIKKLKKNVDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPQDRL 748 Query: 457 PIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKE--SNFRSVVERFNSLHEH 513 PI+T ++ N DE++ E ++ + + Y++ ++E+ E ++ + +V N Sbjct: 749 PIQTYVMEYN--DEMVREAIERECARNGQVYYVYNRVEDIAEVTAHIQKLVPELN----- 801 Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 ++ HG+M + + E +M F NG +L++TT+IE G+D+ + + +II +A+ GL Sbjct: 802 ----VSFAHGQMKEHELEKIMYDFINGDIDVLVSTTIIETGLDISNVNTMIIHDADRLGL 857 Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628 +QL+QLRGRVGR ++ LLY L + + RL+ ++ D GF IA DL+ R Sbjct: 858 SQLYQLRGRVGRSGRMAYAFLLYRKDKLLKEIAEKRLAAIREFTDLGSGFKIAMRDLEIR 917 Query: 629 KEGEILGIKQSG 640 G +LG +Q G Sbjct: 918 GAGNLLGAEQHG 929 >gi|312880022|ref|ZP_07739822.1| transcription-repair coupling factor [Aminomonas paucivorans DSM 12260] gi|310783313|gb|EFQ23711.1| transcription-repair coupling factor [Aminomonas paucivorans DSM 12260] Length = 1041 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 138/408 (33%), Positives = 220/408 (53%), Gaps = 19/408 (4%) Query: 242 LMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ Q ++EI G P + +L P+ T+ Q A ++I +DM + M R+L Sbjct: 482 LLEAQARREISEGFPFPPLREETALLLDTFPYRETEDQIRAWEEIREDMERPVPMDRLLV 541 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT +AL A A G Q ++ P +LA QH + + + VE+++ Sbjct: 542 GDVGFGKTELALRAAFKAAMGGKQVALITPTTLLAHQHGQTFRDRLSPFPLRVEVLSRFR 601 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 +A +++ L +A G+ ++IGTH L +++ ++ L+IVDE+HRFGV + K Sbjct: 602 TEAEQKEVLGALAEGKVDVVIGTHRLLSGDVRFARMGLLIVDEEHRFGVLHKEKWRAAFP 661 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 A VLL++ATPIPRTL L G D+S + P R+P+ TV+ P + E + R V+ Sbjct: 662 AADVLLLSATPIPRTLHLALGGYRDLSVLATPPHHRRPVLTVVSPWS---ESLVRGAVLR 718 Query: 480 --SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537 + G + +W+ +I+ + R + F +L + + HGRM + + E VM F Sbjct: 719 EKARGGQVFWVHNRIQSIHKQALR-LRRLFPNLR------LEVAHGRMKERELEEVMGRF 771 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY- 596 G LL+ TT+IE G+D+ A+ +++++A GLAQLHQLRGRVGR EE + LY Sbjct: 772 VEGKTDLLLCTTIIESGLDLPRANTLVVDDAHDLGLAQLHQLRGRVGRREEQAFAFFLYP 831 Query: 597 -HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 LS+ + RL + ++ G +A DL R G+++G+ Q G Sbjct: 832 ERAELSREARDRLEAIAELDELGGGLQLARRDLAIRGGGDLMGLLQHG 879 >gi|145295117|ref|YP_001137938.1| hypothetical protein cgR_1060 [Corynebacterium glutamicum R] gi|140845037|dbj|BAF54036.1| hypothetical protein [Corynebacterium glutamicum R] Length = 1214 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 138/414 (33%), Positives = 219/414 (52%), Gaps = 19/414 (4%) Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 +AG++ L ++Q G P + +++ N P+ T+ Q AI + +DM + Sbjct: 600 IAGELVELYAKRQSAP--GHPFAPDTPWQKEMEDNFPYVETEDQMLAIDAVKEDMEKSVP 657 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R++ GDVG GKT VA+ A AV+ G Q ++ P +LAQQH ++ + ++ Sbjct: 658 MDRVIIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHQSTFEERMTGFPVTIK 717 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++ A R+ L +A G I+IGTH L Q +Q+ L LVIVDE+ RFGV+ + Sbjct: 718 GLSRFTSPAESREILSGLAAGSVDIVIGTHRLLQTGVQWKNLGLVIVDEEQRFGVEHKEH 777 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 + T VL M+ATPIPRTL ++ G +++ + P R PI T + P +V Sbjct: 778 IKALRTHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHPILTYVGPYED-KQVAA 836 Query: 474 RLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531 ++ L + ++I ++ EKK R +V + + + HG+MS+ E Sbjct: 837 SIRRELLRDGQVFFIHNKVADIEKKAREIRDLVPE---------ARVVVAHGQMSEELLE 887 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 + F + +L+ TT++E G+D+ +A+ +I+ENA H GL+QLHQLRGRVGR E Sbjct: 888 QTVQGFWDREYDVLVCTTIVETGLDISNANTLIVENAHHMGLSQLHQLRGRVGRSRERGY 947 Query: 592 CILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 LY L++ SY RL+ + D G +A +DL+ R G +LG +QSG Sbjct: 948 AYFLYPKGATLTEMSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSG 1001 >gi|153814527|ref|ZP_01967195.1| hypothetical protein RUMTOR_00741 [Ruminococcus torques ATCC 27756] gi|317500570|ref|ZP_07958791.1| transcription-repair coupling factor [Lachnospiraceae bacterium 8_1_57FAA] gi|145848021|gb|EDK24939.1| hypothetical protein RUMTOR_00741 [Ruminococcus torques ATCC 27756] gi|316898003|gb|EFV20053.1| transcription-repair coupling factor [Lachnospiraceae bacterium 8_1_57FAA] Length = 1115 Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 133/373 (35%), Positives = 210/373 (56%), Gaps = 15/373 (4%) Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T Q AI+D DM K M R++ GDVG GKT +A+ A AV+ G Q V + P IL Sbjct: 570 TDDQLQAIEDTKHDMESKKIMDRLICGDVGYGKTEIAIRAAFKAVQEGKQVVCLVPTTIL 629 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 AQQHY + + + ++++ A ++K +E G I++GTH + + + Sbjct: 630 AQQHYNTFVQRLKEFPVRIDLLCRFRSAAEQKKTIEDTKKGFVDILVGTHRVLSKDVVFK 689 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L L+I+DE+ RFGV + K+ + VL +TATPIPRTL ++ +G D+S + E P Sbjct: 690 DLGLLIIDEEQRFGVTHKEKIKKLKENIDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPN 749 Query: 454 GRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512 R PI+T ++ N DE++ E + L+ + Y++ ++ ++ V R SL Sbjct: 750 ERMPIQTYVMEYN--DEMVREAITRELARDGQVYYVYNRV-----NDIADVAGRIQSLVP 802 Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 +++A HG+M + + E +M F NG +L++TT+IE G+D+ +A+ +II++A+ FG Sbjct: 803 D--ANVAFAHGQMKERELEDIMYDFINGDIDVLVSTTIIETGLDIPNANTMIIQDADRFG 860 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627 L+QL+QLRGRVGR ++ LLY L + + RLS ++ D G IA DL+ Sbjct: 861 LSQLYQLRGRVGRSNRMAYAFLLYQRDKLLKEVAEKRLSAIREFTDLGSGIKIAMRDLEI 920 Query: 628 RKEGEILGIKQSG 640 R G +LG QSG Sbjct: 921 RGAGNLLGEAQSG 933 >gi|19552188|ref|NP_600190.1| transcription-repair coupling factor [Corynebacterium glutamicum ATCC 13032] Length = 1214 Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 138/414 (33%), Positives = 219/414 (52%), Gaps = 19/414 (4%) Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 +AG++ L ++Q G P + +++ N P+ T+ Q AI + +DM + Sbjct: 600 IAGELVELYAKRQSAP--GHPFAPDTPWQKEMEDNFPYVETEDQMLAIDAVKEDMEKSVP 657 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R++ GDVG GKT VA+ A AV+ G Q ++ P +LAQQH ++ + ++ Sbjct: 658 MDRVIIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHQSTFEERMTGFPVTIK 717 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++ A R+ L +A G I+IGTH L Q +Q+ L LVIVDE+ RFGV+ + Sbjct: 718 GLSRFTSPAESREILSGLAAGSVDIVIGTHRLLQTGVQWKNLGLVIVDEEQRFGVEHKEH 777 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 + T VL M+ATPIPRTL ++ G +++ + P R PI T + P +V Sbjct: 778 IKALRTHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHPILTYVGPYED-KQVAA 836 Query: 474 RLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531 ++ L + ++I ++ EKK R +V + + + HG+MS+ E Sbjct: 837 SIRRELLRDGQVFFIHNKVADIEKKAREIRDLVPE---------ARVVVAHGQMSEELLE 887 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 + F + +L+ TT++E G+D+ +A+ +I+ENA H GL+QLHQLRGRVGR E Sbjct: 888 QTVQGFWDREYDVLVCTTIVETGLDISNANTLIVENAHHMGLSQLHQLRGRVGRSRERGY 947 Query: 592 CILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 LY L++ SY RL+ + D G +A +DL+ R G +LG +QSG Sbjct: 948 AYFLYPKGATLTEMSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSG 1001 >gi|78184749|ref|YP_377184.1| transcription-repair coupling factor [Synechococcus sp. CC9902] gi|78169043|gb|ABB26140.1| Transcription-repair coupling factor [Synechococcus sp. CC9902] Length = 1192 Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 138/422 (32%), Positives = 228/422 (54%), Gaps = 22/422 (5%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G +G ++ + P+ PT Q + D+ +DM + M R++ GDVG GKT VA+ Sbjct: 601 GFAFPPDGPWQTELEESFPYEPTPDQLKSTTDVKRDMERAEPMDRLVCGDVGFGKTEVAI 660 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A+ A+ AG Q ++AP +LAQQH+ + + I V ++ R+ LE + Sbjct: 661 RAIFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYPIKVALLNRFRTTTERKSILEGL 720 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 G ++GTH L S + +L L++VDE+ RFGV Q+ K+ VL ++ATPI Sbjct: 721 KQGTIDAVVGTHQLLSKSTSFQQLGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPI 780 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491 PRTL ++ G ++S IT P R+PIKT + ++ + V ++ L G + +++ P+ Sbjct: 781 PRTLYMSLSGVREMSLITTPPPLRRPIKTHLASLD-PEAVRSAIRQELDRGGQVFYVVPR 839 Query: 492 IE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549 +E E + R+++ L + HG+M++ + ES M +F G +++ TT Sbjct: 840 VEGIEDVANGLRTMLPGLKLL---------VAHGQMAEGELESAMVAFNAGEADVMLCTT 890 Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYT 606 ++E G+D+ + I+IE+A FGLAQL+QLRGRVGR I + L++P LS N+ Sbjct: 891 IVESGLDIPRVNTILIEDAHRFGLAQLYQLRGRVGR-SGIQAHAWLFYPGNASLSDNARQ 949 Query: 607 RLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIAR 660 RL ++ G+ +A D++ R G +LG++QSG + F + L +SL EI Sbjct: 950 RLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQG 1009 Query: 661 KD 662 +D Sbjct: 1010 QD 1011 >gi|88808865|ref|ZP_01124374.1| Transcriptional-repair coupling factor [Synechococcus sp. WH 7805] gi|88786807|gb|EAR17965.1| Transcriptional-repair coupling factor [Synechococcus sp. WH 7805] Length = 1180 Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 138/422 (32%), Positives = 227/422 (53%), Gaps = 22/422 (5%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G V+G ++ + P+ PT Q A ++ +DM + M R++ GDVG GKT VA+ Sbjct: 589 GFAFPVDGPWQTELEESFPYEPTPDQLKATAEVKRDMEKSQPMDRLVCGDVGFGKTEVAI 648 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A+ A+ AG Q ++AP +LAQQH+ + + I V ++ R+ LE + Sbjct: 649 RAIFKAITAGRQVAMLAPTTVLAQQHWRTLSERFAPYPIKVALLNRFRTAGERKSILEGL 708 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 G ++GTH L S + KL L++VDE+ RFGV Q+ K+ VL ++ATPI Sbjct: 709 KKGTIDAVVGTHQLLSKSTAFDKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPI 768 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491 PRTL ++ G ++S IT P R+PIKT + ++ + + ++ L G + +++ P+ Sbjct: 769 PRTLYMSLSGVREMSLITTPPPLRRPIKTHLAALDE-EAIRSAIRQELDRGGQVFYVVPR 827 Query: 492 IE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549 +E E R ++ L + HG+M++ + ES M +F G +++ TT Sbjct: 828 VEGIEDVAGQLRQMLPGLKLL---------VAHGQMAEGELESAMVAFNGGEADVMLCTT 878 Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYT 606 ++E G+D+ + I+IE+A FGLAQL+QLRGRVGR I + L++P LS+ + Sbjct: 879 IVESGLDIPRVNTILIEDAHRFGLAQLYQLRGRVGR-SGIQAHAWLFYPGNASLSEAARQ 937 Query: 607 RLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIAR 660 RL ++ G+ +A D++ R G +LG++QSG + F + L +SL EI Sbjct: 938 RLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQG 997 Query: 661 KD 662 +D Sbjct: 998 QD 999 >gi|302205849|gb|ADL10191.1| transcription-repair coupling factor [Corynebacterium pseudotuberculosis C231] gi|302330407|gb|ADL20601.1| transcription-repair coupling factor [Corynebacterium pseudotuberculosis 1002] gi|308276083|gb|ADO25982.1| transcription-repair coupling factor [Corynebacterium pseudotuberculosis I19] Length = 1264 Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 140/429 (32%), Positives = 224/429 (52%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W + ++ A +AG++ L ++Q G P + ++ N P+ T+ Q Sbjct: 599 DWKNTKKKARAAVREIAGELVELYAKRQSAP--GHPFAPDSPWQYEMEDNFPYVETEDQM 656 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 AI+ + DM + M R++ GDVG GKT VA+ A AV+ G Q V++ P +LAQQH Sbjct: 657 MAIEAVKADMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVVVLVPTTLLAQQHL 716 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + ++ ++ ++ +A G I+IGTH L Q IQ+ L LV Sbjct: 717 STFDERMAGFPVNLRGLSRFTSTVEAKETIKGLADGTVDIVIGTHRLLQTGIQWKNLGLV 776 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + + T VL M+ATPIPRTL ++ G ++S I P R PI Sbjct: 777 IVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPI 836 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516 T + ++ ++ L + +++ ++ EKK + R +V + Sbjct: 837 LT-YVGAQEDKQIAAAIRRELLRDGQVFFVHNKVSDIEKKARDLRELVPE---------A 886 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 I + HG+MS+ E + F + +L+ TT++E G+D+ +A+ +I+ENA H GL+QL Sbjct: 887 RIVVAHGQMSEELLEQTVQGFWDREFDVLVCTTIVETGLDIANANTLIVENAHHMGLSQL 946 Query: 577 HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 HQLRGRVGR E LY L++NSY RL+ + D G +A +DL+ R G Sbjct: 947 HQLRGRVGRSRERGYAYFLYPKGQTLTENSYDRLATIAQNNDLGAGMAVAMKDLEMRGAG 1006 Query: 632 EILGIKQSG 640 +LG +QSG Sbjct: 1007 NVLGAQQSG 1015 >gi|302876604|ref|YP_003845237.1| transcription-repair coupling factor [Clostridium cellulovorans 743B] gi|307687278|ref|ZP_07629724.1| transcription-repair coupling factor [Clostridium cellulovorans 743B] gi|302579461|gb|ADL53473.1| transcription-repair coupling factor [Clostridium cellulovorans 743B] Length = 1173 Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 144/430 (33%), Positives = 233/430 (54%), Gaps = 21/430 (4%) Query: 219 EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EW + + R + +E+ + L R+ K G + + Q+ P+ T Q Sbjct: 577 EWQKAKTKARNSINEIAQDLVKLYATREAVK---GYSFSKDTTWQQQFEAEFPYEETPDQ 633 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 SAI++I DM + M R+L GDVG GKT VA+ A AV G QA + P ILA+QH Sbjct: 634 ISAIEEIKVDMEKNKPMDRLLCGDVGYGKTEVAMRAAFKAVMDGKQAAFLVPTTILAEQH 693 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y+ +KK + +++I+ +++ L+ + G IIIGTH + ++Q+ L L Sbjct: 694 YKTLKKRFTGFPVNIDMISRFRSATQQKETLKSLKEGNVDIIIGTHKILGKTVQFKDLGL 753 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +IVDE+ RFGV + K+ VL ++ATPIPRTL ++ G IS I P R P Sbjct: 754 LIVDEEQRFGVSHKEKIKNAKKNIDVLTLSATPIPRTLNMSLTGVRSISVIETPPEERYP 813 Query: 458 IKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 ++T ++ N D++I L+ + +G + +++ ++E N R + + L Sbjct: 814 VQTYVVEYN--DQLIRDAVLREINRKG-QVFFVFNRVE-----NIREIADSLAHLIPE-- 863 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + I + HG+M++ + E VM +F N +L++TT+IE GID+ +A+ +II +A+ GL+Q Sbjct: 864 ARIIVAHGQMAEKELEEVMRAFMNQEYDILVSTTIIETGIDIQNANTMIIYDADKMGLSQ 923 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGRVGR I+ L Y +++ + RL +K+ TE GF +A DL+ R Sbjct: 924 LYQLRGRVGRTNRIAYAYLTYRKDKIITEVAKKRLKAIKDFTELGSGFKVALRDLEIRGA 983 Query: 631 GEILGIKQSG 640 G ++G Q G Sbjct: 984 GNVMGSAQHG 993 >gi|170077902|ref|YP_001734540.1| transcription-repair coupling factor [Synechococcus sp. PCC 7002] gi|169885571|gb|ACA99284.1| Transcription-repair coupling factor (TRCF) [Synechococcus sp. PCC 7002] Length = 1162 Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 140/411 (34%), Positives = 225/411 (54%), Gaps = 18/411 (4%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 + LL + Q + GI + Q++ + P+ T Q A++DI +D+ M R+ Sbjct: 580 VDLLKIYAQRAEMKGITYPSDAPWQQEMEDSFPYQATPDQLKAVQDIKRDLESDRPMDRL 639 Query: 298 LQGDVGSGKTLVALIAMAAAVEAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 + GDVG GKT VA+ A+ V G Q ++AP IL QQHY +K+ I + ++ Sbjct: 640 VCGDVGFGKTEVAIRAIFKVVTGGHKQVALLAPTTILTQQHYHTLKERFSPYPINIGLLN 699 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 + R+ LER+ G+ I++GT L +Q+ L L++VDE+ RFGV Q+ K+ Sbjct: 700 RFRTASERKDILERLHKGELDIVVGTQQLLGKDVQFKDLGLLVVDEEQRFGVNQKEKIKA 759 Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-L 475 T VL ++ATPIPRTL ++ G ++S IT P R+PI+T + N E+I + Sbjct: 760 LKTKVDVLTLSATPIPRTLYMSLSGIREMSLITTPPPSRRPIQTHVSRHN--PEIIRTAI 817 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVM 534 + L G + +++ P++E + L E S+ +AI HG+M++ D E+ M Sbjct: 818 RNELDRGGQIFYVVPRVE--------GIETIATQLQEMIPSARVAIAHGQMNEADLETTM 869 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 +F NG +L+ TT++E G+D+ + II+E+A+ FGL+QL+QLRGRVGR + L Sbjct: 870 LTFNNGEADILLCTTIVESGLDIPRVNTIIVEDAQKFGLSQLYQLRGRVGRSGIQAHAWL 929 Query: 595 LY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640 LY L++ + RL L+ G+ +A D++ R G +LG +QSG Sbjct: 930 LYPSKGELTEKARKRLRALQEFSQLGSGYQLAMRDMEIRGVGNLLGAEQSG 980 >gi|114768783|ref|ZP_01446409.1| transcription-repair coupling factor [alpha proteobacterium HTCC2255] gi|114549700|gb|EAU52581.1| transcription-repair coupling factor [alpha proteobacterium HTCC2255] Length = 1151 Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 145/401 (36%), Positives = 229/401 (57%), Gaps = 24/401 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +AI+D++ DMS M R++ GDVG GKT VAL A A AG QA I+AP Sbjct: 598 PYVETDDQLNAIEDVVSDMSSGKPMDRLICGDVGFGKTEVALRAAFIAASAGTQAAIIAP 657 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QH++ ++ + T I V+ ++ + + +K E + G IIIGTHAL Sbjct: 658 TTLLARQHFKSFEERFRGTGIRVKQLSRFVTTSQMKKNREALRDGAVEIIIGTHALLAKD 717 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ L L+I+DE+ +FGV + +L Q + HVL +TATPIPRTL L+ G ++S I Sbjct: 718 IKFANLGLLIIDEEQKFGVGHKERLKQLRSDIHVLTLTATPIPRTLQLSLSGVRELSVIG 777 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R I+T ++ D V R + +L E G +++++ P+I + E +E Sbjct: 778 TPPIDRLAIRTY---VSEFDTVTLR-EALLREHYRGGQSFFVVPRISDLPE------IEA 827 Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 F + E + + HG+M + + M++F +G +L+ATT++E G+D+ A+ III Sbjct: 828 F--IEEQVPEINHVVAHGQMPAGELDERMNAFYDGKFGILVATTIVESGLDIPTANTIII 885 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 A+ FGL+QL+Q+RGRVGR + + L P L+ + RL VL + + GF++ Sbjct: 886 HRADMFGLSQLYQIRGRVGRSKTRAYAYLTTKPRQKLTHAAIKRLRVLGSLDSLGAGFML 945 Query: 621 AEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEI 658 A +DL R G ILG +QSG + + + Q L D++ +I Sbjct: 946 ASQDLDIRGAGNILGEEQSGNVREVGYELYQEMLEDAIAKI 986 >gi|62389854|ref|YP_225256.1| transcription-repair coupling factor [Corynebacterium glutamicum ATCC 13032] gi|41325189|emb|CAF19670.1| PUTATIVE TRANSCRIPTION-REPAIR COUPLING FACTOR [Corynebacterium glutamicum ATCC 13032] Length = 1217 Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 138/414 (33%), Positives = 219/414 (52%), Gaps = 19/414 (4%) Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 +AG++ L ++Q G P + +++ N P+ T+ Q AI + +DM + Sbjct: 603 IAGELVELYAKRQSAP--GHPFAPDTPWQKEMEDNFPYVETEDQMLAIDAVKEDMEKSVP 660 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R++ GDVG GKT VA+ A AV+ G Q ++ P +LAQQH ++ + ++ Sbjct: 661 MDRVIIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHQSTFEERMTGFPVTIK 720 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++ A R+ L +A G I+IGTH L Q +Q+ L LVIVDE+ RFGV+ + Sbjct: 721 GLSRFTSPAESREILSGLAAGSVDIVIGTHRLLQTGVQWKNLGLVIVDEEQRFGVEHKEH 780 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 + T VL M+ATPIPRTL ++ G +++ + P R PI T + P +V Sbjct: 781 IKALRTHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHPILTYVGPYED-KQVAA 839 Query: 474 RLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531 ++ L + ++I ++ EKK R +V + + + HG+MS+ E Sbjct: 840 SIRRELLRDGQVFFIHNKVADIEKKAREIRDLVPE---------ARVVVAHGQMSEELLE 890 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 + F + +L+ TT++E G+D+ +A+ +I+ENA H GL+QLHQLRGRVGR E Sbjct: 891 QTVQGFWDREYDVLVCTTIVETGLDISNANTLIVENAHHMGLSQLHQLRGRVGRSRERGY 950 Query: 592 CILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 LY L++ SY RL+ + D G +A +DL+ R G +LG +QSG Sbjct: 951 AYFLYPKGATLTEMSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSG 1004 >gi|68536576|ref|YP_251281.1| transcription-repair coupling factor [Corynebacterium jeikeium K411] gi|68264175|emb|CAI37663.1| transcription-repair coupling factor [Corynebacterium jeikeium K411] Length = 1258 Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 135/429 (31%), Positives = 224/429 (52%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W + R+ +AG++ L +Q G + +++ PF+ T+ Q Sbjct: 625 DWKNTKRKARGAVREIAGELVQLYASRQAAP--GYAFAADTPWQREMEDAFPFTETEDQY 682 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI+ + DM + M R++ GDVG GKT VA+ A AV++G Q ++ P +LAQQHY Sbjct: 683 NAIEAVKADMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQSGKQVAVLVPTTLLAQQHY 742 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + Q+ ++ ++ A +K + +A G I+IGTH L Q + + L L+ Sbjct: 743 NTFSERMQDFPTTIKELSRFTTPAESKKVIAGMADGTVDIVIGTHRLLQTGVHWKNLGLI 802 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + + T VL M+ATPIPRTL ++ G ++S I P R P+ Sbjct: 803 IVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPV 862 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516 T + V ++ L + +++ ++ E+ ++ R +V + Sbjct: 863 LT-YVGAQEDKHVAAAIRRELLRDGQVFYVHNKVRSIEQTAADIRRLVPE---------A 912 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 + + HG+MS+ E+ + F + +L+ TT++E G+D+ +A+ +I+ENA H GL+QL Sbjct: 913 RVVVAHGQMSEEQLETTVKGFWDREFDVLVCTTIVETGLDIANANTLIVENAHHMGLSQL 972 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 HQLRGRVGR E LY L++ SY RL+ + D G +A +DL+ R G Sbjct: 973 HQLRGRVGRSRERGYAYFLYPKGEVLTETSYDRLTTIAQNNDLGAGMAVAMKDLEMRGAG 1032 Query: 632 EILGIKQSG 640 +LG +QSG Sbjct: 1033 NVLGAEQSG 1041 >gi|329666673|gb|AEB92621.1| transcription-repair coupling factor [Lactobacillus johnsonii DPC 6026] Length = 1165 Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 139/431 (32%), Positives = 233/431 (54%), Gaps = 21/431 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT + + E +A + L +++ +K G + + + ++ P+ T Q Sbjct: 563 EWTKTKKRVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKEFEDAFPYPETPDQL 620 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I++I DM M R+L GDVG GKT VAL A A+ G Q +AP ILAQQH+ Sbjct: 621 RSIREIKADMESPKPMDRLLVGDVGFGKTEVALRAAFKAIRDGKQVAFLAPTTILAQQHF 680 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E ++ ++ + +++ A ++ +E + G+ +++GTH L +Q+ L L+ Sbjct: 681 ETMQDRFKDFPVNCALLSRFQTPAEVKEIVEGVKSGKIDMVVGTHRLLSKDVQFKDLGLL 740 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L + VL +TATPIPRTL ++ +G D+S + P R PI Sbjct: 741 IIDEEQRFGVKHKERLKELKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPTNRYPI 800 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 +T + + + ++ + VL E K+ +++ +I+ + VV + L Sbjct: 801 QTYV--MEEMPSIVR--EAVLREMKRNGQVFFLHNRID-----DIDKVVSQLEELIPE-- 849 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + I IHGRMS+ E +M F +L+ TT+IE G+D+ + + +I+E+A+H+GL+Q Sbjct: 850 AKIEYIHGRMSENQMEDIMYRFSKNEFDILVTTTIIETGVDMPNVNTMIVEDADHYGLSQ 909 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGR+GR ++ LY P L++ RLS +++ TE GF IA DL R Sbjct: 910 LYQLRGRIGRSARLAYAYFLYQPNKVLTEIGEKRLSAIRDFTELGSGFKIAMRDLSIRGA 969 Query: 631 GEILGIKQSGM 641 G +LG +Q G Sbjct: 970 GNMLGKQQHGF 980 >gi|302339041|ref|YP_003804247.1| transcription-repair coupling factor [Spirochaeta smaragdinae DSM 11293] gi|301636226|gb|ADK81653.1| transcription-repair coupling factor [Spirochaeta smaragdinae DSM 11293] Length = 1128 Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 148/458 (32%), Positives = 251/458 (54%), Gaps = 24/458 (5%) Query: 220 WTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 W S AR R + ++L I L RK+ + P + + ++ + P+ T Q Sbjct: 537 WESRKARVRKSVEDLADRLIKLYAKRKE-ARGFSFPEDTDWQV--EFEAEFPYQETADQL 593 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 I+++ DM M R++ GDVG GKT VA+ A AV AG Q +AP ILA+QHY Sbjct: 594 RCIEEVKADMESDRPMDRLICGDVGYGKTEVAMRAAFKAVVAGKQVAFLAPTTILAEQHY 653 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + + + +++++ +P+ + + L + G ++IGTH + Q + + L L+ Sbjct: 654 ENFCERFKRYPVKIDMVSRFVPKKKQHQILSALTEGSVDLLIGTHRILQKDVLFKNLGLI 713 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 ++DE+ RFGV+ + +L + T+ L ++ATPIPRTL ++ L DIS +T P R+PI Sbjct: 714 VIDEEQRFGVKDKERLKELRTSVDSLSLSATPIPRTLHMSLLKIRDISLLTTAPNNRRPI 773 Query: 459 KTVIIPINRIDE--VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T I DE V + ++ + G + +++ ++E + R +ER + E F Sbjct: 774 ETT---IQEFDEELVAKAIRREMDRGGQVFFLHNRVETLPQ--VRRFLERL--IPEVF-- 824 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 + I HG+MS E +M F +G+ ++L+ATT+IE GID+ + + III+ A+ +G++QL Sbjct: 825 -VEIAHGQMSSSQLEDIMHRFIHGSFQVLLATTIIENGIDIPNVNTIIIDRADMYGISQL 883 Query: 577 HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 +QLRGRVGR + S L Y LS+ + RL ++ + + GF IA +D++ R G Sbjct: 884 YQLRGRVGRSDRSSYAYLFYPEQRSLSEIAMKRLQIISDYTELGSGFKIAMKDMEVRGAG 943 Query: 632 EILGIKQSG---MPKFLIAQPELHDSLLEIARKDAKHI 666 +LG +Q G F + L +++ E++R D + I Sbjct: 944 NLLGRQQHGEILSVGFDMYLRILDEAVAEMSRGDGEEI 981 >gi|229917410|ref|YP_002886056.1| transcription-repair coupling factor [Exiguobacterium sp. AT1b] gi|229468839|gb|ACQ70611.1| transcription-repair coupling factor [Exiguobacterium sp. AT1b] Length = 1175 Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 136/382 (35%), Positives = 215/382 (56%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P++ T+ Q +I +I DM + M R+L GDVG GKT VA+ A AV AG Q + Sbjct: 615 SFPYAETEDQVRSIAEIKADMERSRPMDRLLCGDVGYGKTEVAIRAAFKAVLAGKQVAFL 674 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHYE + + I V +++ ++ + + G I++GTH + Sbjct: 675 VPTTVLAQQHYETMLERFSEFPINVSVMSRFRSKSEMTATKKGLKEGTIDIVVGTHRVLS 734 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + + L LVI+DE+ RFGV+ + +L Q T VL +TATPIPRTL ++ +G D+S Sbjct: 735 KDVTFANLGLVIIDEEQRFGVKHKERLKQLKTNIDVLTLTATPIPRTLHMSMIGIRDLSV 794 Query: 448 ITEKPAGRKPIKTVIIPINRI--DEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSV 503 + P R P++T ++ + I E +ER L+ G +A+++ ++E E+K R++ Sbjct: 795 LETPPENRYPVQTYVMEYDGIVLREALER---ELARGGQAFFLYNRVEGIERKAEEIRAL 851 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + + IA HGRM++ + ES + SF G +L++TT+IE GID+ + + + Sbjct: 852 LP---------DARIATAHGRMTESELESQLISFLEGEADILVSTTIIETGIDIPNVNTL 902 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGF 618 I+ +A+ GL+QL+QLRGRVGR I+ Y L++ + +RL +K TE GF Sbjct: 903 IVHDADKMGLSQLYQLRGRVGRSNRIAYAYFTYRKDKRLTEVAESRLQAIKEFTELGSGF 962 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 IA DL R G +LG +QSG Sbjct: 963 KIAMRDLSIRGAGNLLGAQQSG 984 >gi|42518364|ref|NP_964294.1| transcription-repair coupling factor [Lactobacillus johnsonii NCC 533] gi|41582649|gb|AAS08260.1| transcription-repair coupling factor [Lactobacillus johnsonii NCC 533] Length = 1165 Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 139/431 (32%), Positives = 233/431 (54%), Gaps = 21/431 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT + + E +A + L +++ +K G + + + ++ P+ T Q Sbjct: 563 EWTKTKKRVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKEFEDAFPYPETPDQL 620 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I++I DM M R+L GDVG GKT VAL A A+ G Q +AP ILAQQH+ Sbjct: 621 RSIREIKADMESPKPMDRLLVGDVGFGKTEVALRAAFKAIRDGKQVAFLAPTTILAQQHF 680 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E ++ ++ + +++ A ++ +E + G+ +++GTH L +Q+ L L+ Sbjct: 681 ETMQDRFKDFPVNCALLSRFQTPAEVKEIVEGVKSGKIDMVVGTHRLLSKDVQFKDLGLL 740 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L + VL +TATPIPRTL ++ +G D+S + P R PI Sbjct: 741 IIDEEQRFGVKHKERLKELKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPTNRYPI 800 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 +T + + + ++ + VL E K+ +++ +I+ + VV + L Sbjct: 801 QTYV--MEEMPSIVR--EAVLREMKRNGQVFFLHNRID-----DIDKVVSQLEELIPE-- 849 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + I IHGRMS+ E +M F +L+ TT+IE G+D+ + + +I+E+A+H+GL+Q Sbjct: 850 AKIEYIHGRMSENQMEDIMYRFSKNEFDILVTTTIIETGVDMPNVNTMIVEDADHYGLSQ 909 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGR+GR ++ LY P L++ RLS +++ TE GF IA DL R Sbjct: 910 LYQLRGRIGRSARLAYAYFLYQPNKVLTEIGEKRLSAIRDFTELGSGFKIAMRDLSIRGA 969 Query: 631 GEILGIKQSGM 641 G +LG +Q G Sbjct: 970 GNMLGKQQHGF 980 >gi|300858127|ref|YP_003783110.1| transcription-repair-coupling factor [Corynebacterium pseudotuberculosis FRC41] gi|300685581|gb|ADK28503.1| transcription-repair-coupling factor [Corynebacterium pseudotuberculosis FRC41] Length = 1265 Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 140/429 (32%), Positives = 224/429 (52%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W + ++ A +AG++ L ++Q G P + ++ N P+ T+ Q Sbjct: 600 DWKNTKKKARAAVREIAGELVELYAKRQSAP--GHPFAPDSPWQYEMEDNFPYVETEDQM 657 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 AI+ + DM + M R++ GDVG GKT VA+ A AV+ G Q V++ P +LAQQH Sbjct: 658 MAIEAVKADMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVVVLVPTTLLAQQHL 717 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + ++ ++ ++ +A G I+IGTH L Q IQ+ L LV Sbjct: 718 STFDERMAGFPVNLRGLSRFTSTVEAKETIKGLADGTVDIVIGTHRLLQTGIQWKNLGLV 777 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + + T VL M+ATPIPRTL ++ G ++S I P R PI Sbjct: 778 IVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPI 837 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516 T + ++ ++ L + +++ ++ EKK + R +V + Sbjct: 838 LT-YVGAQEDKQIAAAIRRELLRDGQVFFVHNKVSDIEKKARDLRELVPE---------A 887 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 I + HG+MS+ E + F + +L+ TT++E G+D+ +A+ +I+ENA H GL+QL Sbjct: 888 RIVVAHGQMSEELLEQTVQGFWDREFDVLVCTTIVETGLDIANANTLIVENAHHMGLSQL 947 Query: 577 HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 HQLRGRVGR E LY L++NSY RL+ + D G +A +DL+ R G Sbjct: 948 HQLRGRVGRSRERGYAYFLYPKGQTLTENSYDRLATIAQNNDLGAGMAVAMKDLEMRGAG 1007 Query: 632 EILGIKQSG 640 +LG +QSG Sbjct: 1008 NVLGAQQSG 1016 >gi|118602982|ref|YP_904197.1| transcription-repair coupling factor [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567921|gb|ABL02726.1| transcription-repair coupling factor [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 1142 Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 136/382 (35%), Positives = 220/382 (57%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + PF T Q + ++L DM M R++ GDVG GKT +A+ A AVEAG Q I+ Sbjct: 595 SFPFEETPDQLKTMDEVLADMQSCRPMDRLVCGDVGFGKTEIAMRAAFLAVEAGKQVAIL 654 Query: 328 APIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 P +L+ QHY+ F+ ++ N + + ++ Q ++ ++++ G IIIGTH + Sbjct: 655 VPTTLLSNQHYQSFVDRFI-NHPVEIAALSRFQTQKEKKLIIKKLNQGTIDIIIGTHTII 713 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI-DI 445 Q +I+Y L L+I+DE+HRFGV+Q+ L + +L MTATPIPRTL + +LG + ++ Sbjct: 714 QSTIKYKDLGLIIIDEEHRFGVKQKEALKKIRGESDILTMTATPIPRTLNM-ALGSLREL 772 Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSV 503 S I PA R I+T + N + + E + + G + + + I+ +K N + + Sbjct: 773 SIIATPPAKRSAIQTFVQEWNN-NNIKEAITREMHRGGQVFVLHNDIDSIDKMVENLKQI 831 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + + + + I HG+M + + +M F + ++L+ TT+IE GID+ +A+ I Sbjct: 832 MPKIH---------VRIAHGQMPTRELKKIMSDFYHARFQILVCTTIIETGIDIPNANTI 882 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GF 618 II NA++FGLAQLHQLRGRVGR + L+ + LSK + RL V+++ E+ GF Sbjct: 883 IINNAQNFGLAQLHQLRGRVGRSHHRAYAYLIIKSYQLLSKTAKKRLDVIESLEELGAGF 942 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 ++A DL+ R G++LG QSG Sbjct: 943 ILANHDLEIRGAGDLLGDNQSG 964 >gi|330881517|gb|EGH15666.1| transcription-repair coupling factor [Pseudomonas syringae pv. glycinea str. race 4] Length = 416 Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 138/354 (38%), Positives = 200/354 (56%), Gaps = 17/354 (4%) Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R++ GDVG GKT VA+ A AV G Q I+ P +LAQQHY + + + VE Sbjct: 5 MDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTTLLAQQHYNSFRDRFADWPVTVE 64 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 +++ A+ +A G+ I+IGTH L QD ++ L LVI+DE+HRFGV+Q+ + Sbjct: 65 VMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQDDVKIKNLGLVIIDEEHRFGVRQKEQ 124 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 L + +L +TATPIPRTL + G D+S I PA R ++T ++ N+ + E Sbjct: 125 LKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQNK-PTIKE 183 Query: 474 RLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531 L L G + Y++ ++ EK ++ +V + I I HG+M + + E Sbjct: 184 ALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPE---------ARIGIGHGQMRERELE 234 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 VM F + +LIA+T+IE GIDV A+ IIIE A+ FGLAQLHQLRGRVGR + Sbjct: 235 QVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAY 294 Query: 592 CILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 LL P ++ ++ RL + NT+D GF++A DL+ R GE+LG QSG Sbjct: 295 AYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGDGQSG 348 >gi|225028227|ref|ZP_03717419.1| hypothetical protein EUBHAL_02499 [Eubacterium hallii DSM 3353] gi|224954539|gb|EEG35748.1| hypothetical protein EUBHAL_02499 [Eubacterium hallii DSM 3353] Length = 1187 Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 133/378 (35%), Positives = 211/378 (55%), Gaps = 17/378 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q SAI+D +DM M R++ GDVG GKT VA+ A AV Q V + P Sbjct: 638 PYEETEDQLSAIEDTKRDMESHRIMDRLICGDVGYGKTEVAIRAAFKAVMDSKQVVYLVP 697 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHY K+ ++ + + +++ +++ + + +G I+IGTH + + Sbjct: 698 TTILAQQHYNSFKERMEHYPVEIAMLSRFCTPKEQKRIFDGLKNGTIDIVIGTHKVLSKN 757 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I+Y L L+I+DE+ RFGV+Q+ K+ Q VL ++ATPIPRTL ++ G D+S + Sbjct: 758 IKYKNLGLLIIDEEQRFGVKQKEKIKQLKKDVDVLALSATPIPRTLHMSLAGIRDMSVLE 817 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R+ I+T ++ N + E IER L G + Y++ ++ +N V Sbjct: 818 VPPVDRRAIQTYVMEYNEELVREAIER---ELGRGGQVYYVYNRV-----NNIDEVAAGL 869 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 L + T A HG+M + E++M F N +L++TT+IE G+D+ + + +II++ Sbjct: 870 QRLLPNATVEYA--HGQMGERQLETIMSGFINKEIDVLVSTTIIETGLDIPNVNTMIIQD 927 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAE 622 A+ FGL+QL+QLRGRVGR + L+Y + L + + RL ++ D GF IA Sbjct: 928 AQLFGLSQLYQLRGRVGRSNRTAYAFLMYRRNSILKEEAEKRLKAIREFTDLGSGFKIAM 987 Query: 623 EDLKQRKEGEILGIKQSG 640 DL+ R G +LG +QSG Sbjct: 988 RDLEIRGAGNLLGAEQSG 1005 >gi|212702598|ref|ZP_03310726.1| hypothetical protein DESPIG_00624 [Desulfovibrio piger ATCC 29098] gi|212674039|gb|EEB34522.1| hypothetical protein DESPIG_00624 [Desulfovibrio piger ATCC 29098] Length = 1192 Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 142/431 (32%), Positives = 229/431 (53%), Gaps = 25/431 (5%) Query: 220 WTSPARE-RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 W+S + R A +++ A + + RK K G + G++ + F T Q Sbjct: 594 WSSGKEKVRKAIEKIAADLVEMYAYRKVAK---GFRYDPPGELYHEFEATFGFEETPDQA 650 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 AI+D+L DM + M R++ GDVG GKT VAL A A G Q ++ P +LA+QHY Sbjct: 651 RAIEDVLADMDKSEPMDRLVCGDVGFGKTEVALRAAFRAASEGRQVALLCPTTVLAEQHY 710 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + V +++ +P+A +++ L+ A GQ I++GTH L + L L+ Sbjct: 711 QTFRARLAGFPVTVGLLSRFVPRARQKEVLKAAAEGQIDILLGTHRLLSSDVSLPNLSLL 770 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + KL VL +TATPIPRTL L+ G D+S I P RKP+ Sbjct: 771 ILDEEQRFGVRHKEKLKALKKNVDVLTLTATPIPRTLQLSMSGIRDLSVIETAPQDRKPV 830 Query: 459 KTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 T ++ R D+ R L+ L+ + +W+ +++ E+ R +V Sbjct: 831 ATAVL---RRDDATLRTVLERELAREGQVFWVYNRVQGLERVAEYVRKLVP--------- 878 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 T+ + + HG+MS+ + ES M F +G +L+ T ++E G+D A+ ++++ A+ FGL Sbjct: 879 TARVGMAHGQMSESELESNMHKFWHGELDVLVCTAIVESGLDFPRANTLVVDQAQLFGLG 938 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRK 629 QL+QLRGRVGR + + + LS+ + RL ++ + + GF +A EDL+ R Sbjct: 939 QLYQLRGRVGRSDRQAYAFFVVPDTEHLSEVAEERLRIIMDMDYLGAGFQVAMEDLRLRG 998 Query: 630 EGEILGIKQSG 640 G ILG QSG Sbjct: 999 AGNILGEVQSG 1009 >gi|21323730|dbj|BAB98356.1| Transcription-repair coupling factor - superfamily II helicase [Corynebacterium glutamicum ATCC 13032] Length = 1209 Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 138/414 (33%), Positives = 219/414 (52%), Gaps = 19/414 (4%) Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 +AG++ L ++Q G P + +++ N P+ T+ Q AI + +DM + Sbjct: 595 IAGELVELYAKRQSAP--GHPFAPDTPWQKEMEDNFPYVETEDQMLAIDAVKEDMEKSVP 652 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R++ GDVG GKT VA+ A AV+ G Q ++ P +LAQQH ++ + ++ Sbjct: 653 MDRVIIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHQSTFEERMTGFPVTIK 712 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++ A R+ L +A G I+IGTH L Q +Q+ L LVIVDE+ RFGV+ + Sbjct: 713 GLSRFTSPAESREILSGLAAGSVDIVIGTHRLLQTGVQWKNLGLVIVDEEQRFGVEHKEH 772 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 + T VL M+ATPIPRTL ++ G +++ + P R PI T + P +V Sbjct: 773 IKALRTHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHPILTYVGPYED-KQVAA 831 Query: 474 RLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531 ++ L + ++I ++ EKK R +V + + + HG+MS+ E Sbjct: 832 SIRRELLRDGQVFFIHNKVADIEKKAREIRDLVPE---------ARVVVAHGQMSEELLE 882 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 + F + +L+ TT++E G+D+ +A+ +I+ENA H GL+QLHQLRGRVGR E Sbjct: 883 QTVQGFWDREYDVLVCTTIVETGLDISNANTLIVENAHHMGLSQLHQLRGRVGRSRERGY 942 Query: 592 CILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 LY L++ SY RL+ + D G +A +DL+ R G +LG +QSG Sbjct: 943 AYFLYPKGATLTEMSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSG 996 >gi|154503862|ref|ZP_02040922.1| hypothetical protein RUMGNA_01688 [Ruminococcus gnavus ATCC 29149] gi|153795461|gb|EDN77881.1| hypothetical protein RUMGNA_01688 [Ruminococcus gnavus ATCC 29149] Length = 1121 Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 130/373 (34%), Positives = 211/373 (56%), Gaps = 15/373 (4%) Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T Q AI D QDM K M R++ GDVG GKT +A+ A A++ G Q V + P IL Sbjct: 567 TDDQLQAIADTKQDMESKKIMDRLICGDVGYGKTEIAIRAAFKAIQDGKQVVYLVPTTIL 626 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 AQQHY + + + V+++ A ++K E + G I+IGTH + +++ Sbjct: 627 AQQHYNTFVQRMKEFPVRVDLLCRFRTPAQQKKTTEDLKKGLVDILIGTHRVLSKDVEFK 686 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L L+I+DE+ RFGV + K+ + VL +TATPIPRTL ++ +G D+S + E P Sbjct: 687 DLGLLIIDEEQRFGVTHKEKIKKLRENVDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPM 746 Query: 454 GRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512 R PI+T ++ N DE++ E ++ L + Y++ ++ S+ + + L Sbjct: 747 DRMPIQTYVMEYN--DEMVREAIQRELDRDGQVYYVYNRV-----SDIAEIADHVQKLVP 799 Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 +++A HG+M++ + E++M F NG +L++TT+IE G+D+ +A+ +II +A+ G Sbjct: 800 D--ATVAFAHGQMAEHELENIMYDFINGDIDVLVSTTIIETGLDISNANTMIIHDADRLG 857 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627 L+Q++QLRGRVGR ++ LLY L + + RL+ ++ D GF IA DL+ Sbjct: 858 LSQMYQLRGRVGRSNRMAYAFLLYRRDKLLKEVAEKRLAAIREFTDLGSGFKIAMRDLEI 917 Query: 628 RKEGEILGIKQSG 640 R G +LG +Q G Sbjct: 918 RGAGNLLGAEQHG 930 >gi|237745816|ref|ZP_04576296.1| transcription-repair coupling factor [Oxalobacter formigenes HOxBLS] gi|229377167|gb|EEO27258.1| transcription-repair coupling factor [Oxalobacter formigenes HOxBLS] Length = 1150 Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 146/412 (35%), Positives = 219/412 (53%), Gaps = 17/412 (4%) Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 A ++ L R+ +K G P + + + F T Q +AI +++DM+ + M Sbjct: 570 AAELLDLYARRSMRK--GFPFPLTKNDYEAFADSFGFEETPDQAAAISAVMEDMTSEKPM 627 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R++ GDVG GKT VAL A AV G Q ++AP +LA+QH + + + + + Sbjct: 628 DRLICGDVGFGKTEVALRAAFIAVMGGKQVALLAPTTLLAEQHAQTFRDRFADWPVRISE 687 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 ++ Q + ++ + G I+IGTH L + + +L LVI+DE+HRFGV+Q+ L Sbjct: 688 LSRFRTQKQVNQTIQGLEDGSVDIVIGTHKLLSKDVSFKRLGLVIIDEEHRFGVRQKEAL 747 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-E 473 VL +TATPIPRTL + G S I P R IKT + N D VI E Sbjct: 748 KAIRAEVDVLTLTATPIPRTLGMALDGLRSFSIIATAPQKRLAIKTFVRSEN--DSVIRE 805 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 L G + Y++ ++E + N R ++E N L E + I + HG+M + D E V Sbjct: 806 ACLRELKRGGQVYFLHNEVETIE--NRRVMLE--NLLPE---ARIGVAHGQMHERDLEKV 858 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M F +L+ TT+IE GIDV +A+ +++ A+ FGLAQLHQLRGR+GR + Sbjct: 859 MRDFVAHRYNILLCTTIIETGIDVPNANTMVMHRADKFGLAQLHQLRGRIGRSHHQAYAY 918 Query: 594 LLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 LL + LSK + RL ++ E+ GF +A DL+ R GE+LG +QSG Sbjct: 919 LLVNDIQTLSKQAQRRLEAIRQMEELGSGFFLAMHDLEIRGAGEVLGEEQSG 970 >gi|149204032|ref|ZP_01881000.1| transcription-repair coupling factor [Roseovarius sp. TM1035] gi|149142474|gb|EDM30519.1| transcription-repair coupling factor [Roseovarius sp. TM1035] Length = 1150 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 142/398 (35%), Positives = 224/398 (56%), Gaps = 21/398 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q AI+D+L D+ M R++ GDVG GKT VA+ A A +G Q ++AP Sbjct: 593 PYQETDDQLHAIEDVLNDLGSGAPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAVIAP 652 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHY+ + + V ++ + K + +A G+A I++GTHAL Sbjct: 653 TTLLARQHYQEFASRFRGFPVNVRPLSRFVSAGEAAKTRDAMARGEADIVVGTHALLAKG 712 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ L L+I+DE+ RFGV + +L Q + HVL +TATPIPRTL L+ G D+S I+ Sbjct: 713 IRFKNLGLLIIDEEQRFGVAHKERLKQLRSDVHVLTLTATPIPRTLQLSLSGVRDLSIIS 772 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R I+T ++ D V R + +L E G +++++ P+I + E +E Sbjct: 773 TPPVDRLSIRTY---VSEFDSVTVR-EALLREHYRGGQSFYVVPRISDLPE------IED 822 Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 F S + I HG+M+ + + M++F +G +L+ATT++E G+D+ A+ +II Sbjct: 823 FLKTQVPEVSYV-IAHGQMAAGELDERMNAFYDGKYDVLLATTIVESGLDIPTANTMIIH 881 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIA 621 A+ FGL+QL+Q+RGRVGR + + L P PL+ + RL VL + + GF +A Sbjct: 882 RADMFGLSQLYQIRGRVGRSKTRAYAYLTTKPRVPLTPGAEKRLRVLGSLDTLGAGFTLA 941 Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 +DL R G +LG +QSG + + EL+ S+LE A Sbjct: 942 SQDLDIRGAGNLLGEEQSGQMRDV--GYELYQSMLEEA 977 >gi|89100521|ref|ZP_01173382.1| transcription-repair coupling factor [Bacillus sp. NRRL B-14911] gi|89084787|gb|EAR63927.1| transcription-repair coupling factor [Bacillus sp. NRRL B-14911] Length = 1179 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 136/398 (34%), Positives = 221/398 (55%), Gaps = 21/398 (5%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G + +G + ++ + P+ T+ Q +I +I DM ++ M R+L GDVG GKT VA+ Sbjct: 604 GYAFSPDGDMQREFELSFPYQETEDQLRSIHEIKLDMEKERPMDRLLCGDVGYGKTEVAI 663 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A A+ G Q I+ P ILAQQHY+ +++ Q + + +++ + + + ++ + Sbjct: 664 RAAFKAIADGKQVAILVPTTILAQQHYQTMRERFQEYPVEIGLLSRFRTKKQQTETVKGL 723 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 +G I++GTH L I Y L L+I+DE+ RFGV + K+ Q T VL +TATPI Sbjct: 724 KNGTVDIVVGTHRLLSKEIIYKDLGLLIIDEEQRFGVTHKEKIKQLKTNVDVLTLTATPI 783 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWIC 489 PRTL ++ LG D+S I P R P++T ++ N + E IER ++ G + Y++ Sbjct: 784 PRTLHMSMLGVRDLSVIETPPENRFPVQTYVMEYNGGLVREAIER---EMARGGQVYFLY 840 Query: 490 PQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 ++E E+K +V + + HG+M++ + ESVM SF G +L++ Sbjct: 841 NRVEDIERKAEEISMLVP---------DAKVVAAHGQMTENELESVMLSFLGGEADVLVS 891 Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSY 605 TT+IE G+D+ + + +I+ +A+ GL+QL+QLRGRVGR ++ Y L++ + Sbjct: 892 TTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAE 951 Query: 606 TRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640 RL +K TE GF IA DL R G +LG +Q G Sbjct: 952 KRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGSQQHG 989 >gi|225387033|ref|ZP_03756797.1| hypothetical protein CLOSTASPAR_00783 [Clostridium asparagiforme DSM 15981] gi|225046851|gb|EEG57097.1| hypothetical protein CLOSTASPAR_00783 [Clostridium asparagiforme DSM 15981] Length = 1221 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 136/378 (35%), Positives = 207/378 (54%), Gaps = 17/378 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q AI + DM + M R++ GDVG GKT VAL A AV+ Q V + P Sbjct: 670 PYDETDDQLDAIDSVKHDMESRKIMDRLVCGDVGYGKTEVALRAAFKAVQDSKQVVYLVP 729 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHY + ++ + V++++ + ++K LE + G I+IGTH + Sbjct: 730 TTILAQQHYNTFVQRMKDFPVRVDMLSRFCTPSQQKKTLEDLRKGMVDIVIGTHRVLSKD 789 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +++ L L+IVDE+ RFGV + K+ Q VL +TATPIPRTL ++ G D+S + Sbjct: 790 MKFRDLGLLIVDEEQRFGVAHKEKIKQMKENVDVLTLTATPIPRTLHMSLAGIRDMSVLE 849 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 E P R PI+T ++ N I E I R LS G + Y++ ++ ++ V R Sbjct: 850 EPPVDRTPIQTYVMEYNEEMIREAINR---ELSRGGQVYYVYNRV-----TDIDEVANRV 901 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 +L + A HG+M + + E +M F NG +L++TT+IE G+D+ +A+ +I+ + Sbjct: 902 AALVPEAVVTFA--HGQMREHELERIMADFINGEIDVLVSTTIIETGLDIPNANTMIVHD 959 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622 A+ GL+QL+QLRGRVGR S L+Y L + + RL ++ TE G IA Sbjct: 960 ADRMGLSQLYQLRGRVGRSNRTSYAFLMYKRDKLLKEEAEKRLQAIREFTELGSGIKIAM 1019 Query: 623 EDLKQRKEGEILGIKQSG 640 DL+ R G +LG +Q G Sbjct: 1020 RDLEIRGAGNVLGAEQHG 1037 >gi|167646581|ref|YP_001684244.1| transcription-repair coupling factor [Caulobacter sp. K31] gi|167349011|gb|ABZ71746.1| transcription-repair coupling factor [Caulobacter sp. K31] Length = 1155 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 145/416 (34%), Positives = 225/416 (54%), Gaps = 30/416 (7%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q SAI D+L+D+ M R++ GDVG GKT VAL A +G Q I+ P Sbjct: 603 PYEETDDQLSAIADVLEDLGSGKPMDRLICGDVGFGKTEVALRAAFVVAMSGKQVAIVCP 662 Query: 330 IGILAQQHYEFIKKYTQNTQIIV----EIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +LA+QHY+ K Q + V ++TG R E +A+GQ I++GTHA+ Sbjct: 663 TTLLARQHYKTFKDRFQGWPVKVTRLSRLVTGKEAAETR----EGLANGQLEIVVGTHAI 718 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445 + + L LVIVDE+ FGV+ + KL + H+L +TATPIPRTL + G ++ Sbjct: 719 LSKQVSFKDLGLVIVDEEQHFGVKHKEKLKELRADVHMLTLTATPIPRTLQMALSGIREM 778 Query: 446 SKITEKPAGRKPIKTVIIPINRID--EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503 S I P R ++T I P + + E + R K G +AY++ P+I++ +E Sbjct: 779 SIIATPPVDRLAVRTYISPFDPVTLREALLREKY---RGGQAYYVVPRIKDLEE------ 829 Query: 504 VERFNSLHEHFTSSIAII-HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 +E+F L ++ HG+M+ E VM +F G +L+ATT++E G+D+ A+ Sbjct: 830 IEKF--LRTQVPEVKYVVGHGQMAPTQLEDVMTAFYEGQYDVLLATTIVESGLDIPSANT 887 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---G 617 +I+ A+ FGLAQL+Q+RGRVGR + + L ++ ++ RL VL++ + G Sbjct: 888 LIVHRADMFGLAQLYQIRGRVGRSKARAYAYLTTPNEKQITLSAEKRLKVLQSLDSLGAG 947 Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFL---IAQPELHDSLLEIARKDAKHILTQD 670 F +A DL QR G +LG +QSG K + + Q L D++ E+ + L +D Sbjct: 948 FQLASHDLDQRGGGNLLGDEQSGHIKEIGVELYQQMLEDAVAELRERQGAEALIED 1003 >gi|330945143|gb|EGH46858.1| transcription-repair coupling factor [Pseudomonas syringae pv. pisi str. 1704B] Length = 369 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 138/354 (38%), Positives = 200/354 (56%), Gaps = 17/354 (4%) Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R++ GDVG GKT VA+ A AV G Q I+ P +LAQQHY + + + VE Sbjct: 1 MDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTTLLAQQHYNSFRDRFADWPVTVE 60 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 +++ A+ +A G+ I+IGTH L QD ++ L LVI+DE+HRFGV+Q+ + Sbjct: 61 VMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLQDDVKIKNLGLVIIDEEHRFGVRQKEQ 120 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 L + +L +TATPIPRTL + G D+S I PA R ++T ++ N+ + E Sbjct: 121 LKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQNK-PTIKE 179 Query: 474 RLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531 L L G + Y++ ++ EK ++ +V + I I HG+M + + E Sbjct: 180 ALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPE---------ARIGIGHGQMRERELE 230 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 VM F + +LIA+T+IE GIDV A+ IIIE A+ FGLAQLHQLRGRVGR + Sbjct: 231 QVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAY 290 Query: 592 CILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 LL P ++ ++ RL + NT+D GF++A DL+ R GE+LG QSG Sbjct: 291 AYLLTPPRKQITHDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGDGQSG 344 >gi|326692375|ref|ZP_08229380.1| transcription-repair coupling factor [Leuconostoc argentinum KCTC 3773] Length = 1176 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 140/432 (32%), Positives = 235/432 (54%), Gaps = 24/432 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ A E +A + L +++ + P + ++ P +P Q Sbjct: 568 EWAKTKRQVAAKIEDIADDLLELYAQREAEAGYAFPPDDTAQLKFDTAFGYPETP--DQI 625 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I++I DM + M R+L GDVG GKT VAL A+ A AG Q +AP IL QQHY Sbjct: 626 RSIEEIKADMQKPRPMDRLLVGDVGFGKTEVALRAIFKAAHAGKQVAFLAPTTILVQQHY 685 Query: 339 E-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 E + +++ ++ + +++ A + + ++ + I++GTH L + + L L Sbjct: 686 ETMLARFSAFPELKIGVLSRFQTPAQNKAVIAKLKAHEIDIVVGTHRLLSQDVTFADLGL 745 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +++DE+ RFGV+ + +L Q + VL +TATPIPRTL + +G D+S I PA R P Sbjct: 746 LVIDEEQRFGVKHKERLKQLRHSVDVLTLTATPIPRTLNMAMVGARDLSVIETPPANRFP 805 Query: 458 IKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 I+T ++ + + IE+ L+ + +++ ++ ++ VV + L + Sbjct: 806 IQTYVLEADWTIVRNAIEK---ELARDGQVFYLHNRV-----ADLDRVVSQIEELVP--S 855 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A IHG+MS+ ES++ F NG +L+ TT+IE G+D+ +A+ +I+ENA+H GL+Q Sbjct: 856 ARVAAIHGQMSETQLESILFDFLNGNYDVLVTTTIIETGVDIPNANTLIVENADHMGLSQ 915 Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKN----SYTRLSVLKN-TE--DGFLIAEEDLKQR 628 L+QLRGRVGR ++ Y P S+ + RL+ +++ TE GF IA DL R Sbjct: 916 LYQLRGRVGRSTRLAYAYFTY--PFSRTPSEEAEKRLAAIRDFTELGSGFRIAMRDLSIR 973 Query: 629 KEGEILGIKQSG 640 G++LG +Q G Sbjct: 974 GAGDLLGKQQHG 985 >gi|229542275|ref|ZP_04431335.1| transcription-repair coupling factor [Bacillus coagulans 36D1] gi|229326695|gb|EEN92370.1| transcription-repair coupling factor [Bacillus coagulans 36D1] Length = 1179 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 142/431 (32%), Positives = 232/431 (53%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ + + +A + L ++ K G + +G + ++ P+ T+ Q Sbjct: 570 EWKRVKRKVQSSIQDIADDLVKLYAEREASK--GFAFSPDGDMQREFEAAFPYKETEDQL 627 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I++I +DM ++ M R+L GDVG GKT VA+ A A+ G Q ++ P ILAQQH+ Sbjct: 628 RSIQEIKRDMEKEKPMDRLLCGDVGYGKTEVAIRAAFKAMMDGKQVAMLVPTTILAQQHF 687 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + + I V +++ + + + ++ + +G ++IGTH L IQ++ L L+ Sbjct: 688 ETVTERFHGYPIKVGLLSRFRTRKEQNETIKGLRNGTIDMVIGTHRLLSKDIQFHDLGLL 747 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV + K+ + T VL +TATPIPRTL ++ +G D+S I P R P+ Sbjct: 748 IIDEEQRFGVSHKEKIKKLKTNVDVLTLTATPIPRTLHMSMVGVRDLSVIETPPENRFPV 807 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N + E IER L+ + Y++ +IE E+K +V Sbjct: 808 QTYVLEYNDQMVREAIER---ELARDGQVYFLYNRIEDIERKAEEIARLVP--------- 855 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + +A HGRM++ ESV+ F G +L+ TT+IE G+D+ + + +I+ +A+ GL+ Sbjct: 856 DARVAYAHGRMTESQLESVIFGFLEGEYDVLVTTTIIETGVDIPNVNTLIVNDADRMGLS 915 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 QL+QLRGRVGR ++ Y L++ S RL +K TE GF IA DL R Sbjct: 916 QLYQLRGRVGRSNRVAYAYFTYRKDKVLAEASEKRLQAIKEFTELGSGFKIAMRDLSIRG 975 Query: 630 EGEILGIKQSG 640 G +LG +Q G Sbjct: 976 AGNLLGAQQHG 986 >gi|113954991|ref|YP_730883.1| transcription-repair coupling factor [Synechococcus sp. CC9311] gi|113882342|gb|ABI47300.1| transcription-repair coupling factor [Synechococcus sp. CC9311] Length = 1180 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 138/422 (32%), Positives = 228/422 (54%), Gaps = 22/422 (5%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G ++G ++ + P+ PT Q A D+ +DM + M R++ GDVG GKT VA+ Sbjct: 589 GFAFPIDGPWQVELEDSFPYEPTSDQLKATVDVKRDMEKPEPMDRLVCGDVGFGKTEVAI 648 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A+ A+ AG Q ++AP +LAQQH+ + + I V ++ R+ LE + Sbjct: 649 RAIFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYPIKVALLNRFRTAGERKTILEEL 708 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 G ++GTH L + + KL L++VDE+ RFGV Q+ K+ VL ++ATPI Sbjct: 709 KTGTIDAVVGTHQLLSKNTAFDKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPI 768 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICP 490 PRTL ++ G ++S IT P R+PIKT + ++ DE + ++ L G + +++ P Sbjct: 769 PRTLYMSLSGVREMSLITTPPPLRRPIKTHLAALD--DEAVRSSIRQELDRGGQVFYVVP 826 Query: 491 QIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549 ++E + E L E + + HG+M++ + ES M +F G +++ TT Sbjct: 827 RVE--------GIEEVAGKLREMLPGLKLLVAHGQMAEGELESAMVAFNGGEADVMLCTT 878 Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYT 606 ++E G+D+ + I+IE+A FGLAQL+QLRGRVGR + + L++P LS+ + Sbjct: 879 IVESGLDIPRVNTILIEDAHRFGLAQLYQLRGRVGRS-GVQAHAWLFYPGDASLSEAARQ 937 Query: 607 RLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIAR 660 RL ++ G+ +A D++ R G +LG++QSG + F + L +SL EI Sbjct: 938 RLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQG 997 Query: 661 KD 662 +D Sbjct: 998 QD 999 >gi|293553692|ref|ZP_06674316.1| transcription-repair coupling factor [Enterococcus faecium E1039] gi|291602267|gb|EFF32495.1| transcription-repair coupling factor [Enterococcus faecium E1039] Length = 1173 Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 140/431 (32%), Positives = 231/431 (53%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ + E +A + L ++ +K G + ++ P+S T Q Sbjct: 570 EWAKTKRKVSSKIEDIADDLIKLYAARESEK--GYAFGPDDAYQKEFENAFPYSETDDQL 627 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I +DM ++ M R+L GDVG GKT VAL A A++ Q + P ILAQQHY Sbjct: 628 RSAAEIKRDMEKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 687 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + + + + + +++ + +++ +E++ GQ I++GTH + I++ L L+ Sbjct: 688 ETMLERFEGFPVNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGTHRILSKDIEFSDLGLL 747 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L Q VL +TATPIPRTL ++ LG D+S I PA R PI Sbjct: 748 IIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPI 807 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I E I R + G + +++ ++E E+K + +V Sbjct: 808 QTYVMEKNPGAIREAIHR---EMGRGGQVFYLYNRVETIEQKVEEIQELVPE-------- 856 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + I HG+M++ E+ + F G +L+ TT+IE G+D+ +A+ + +ENA++ GL+ Sbjct: 857 -ARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLS 915 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ +Y L++ S RL +K+ TE GF IA DL R Sbjct: 916 TLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRG 975 Query: 630 EGEILGIKQSG 640 G +LG +Q G Sbjct: 976 AGNLLGAQQHG 986 >gi|300726486|ref|ZP_07059932.1| transcription-repair coupling factor [Prevotella bryantii B14] gi|299776214|gb|EFI72778.1| transcription-repair coupling factor [Prevotella bryantii B14] Length = 1150 Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 136/400 (34%), Positives = 216/400 (54%), Gaps = 17/400 (4%) Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 K+E G + +G + ++ + + T Q A +++ DM + M R++ GDVG GKT Sbjct: 560 KREKGFAYSKDGYMQHELEASFLYEDTPDQSKATQEVKADMEKDRPMDRLVCGDVGFGKT 619 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 VA+ A A G Q ++ P +LA QHY+ KK + + +E ++ + Sbjct: 620 EVAMRAAFKAACDGKQVAVLVPTTVLAYQHYQSFKKRLEGFPVTIEYLSRARSTKATKAV 679 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 LE + G+ IIIGTH L +++++ L L+I+DE+ +FGV + KL + T L M+ Sbjct: 680 LENLESGKVDIIIGTHKLIGKNVKWHDLGLLIIDEEQKFGVSTKEKLRKIKTNVDTLTMS 739 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAY 486 ATPIPRTL + +G D+S + P R PI T + EVI + + +S + Y Sbjct: 740 ATPIPRTLQFSLMGARDMSIMRTPPPNRYPIHTELTTYGH--EVIADAINFEMSRNGQVY 797 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLL 545 ++ +I SN + + N +H++ + IAI HG+M + E ++ F N +L Sbjct: 798 FVNNRI-----SNLQEIA---NLIHKYVPDARIAIGHGQMKPDELEEILMGFMNYDYDVL 849 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKN 603 ++TT++ GID+ +A+ III A HFGL+ LHQ+RGRVGR + C LL P LS + Sbjct: 850 LSTTIVANGIDISNANTIIINEAHHFGLSDLHQMRGRVGRSNRKAFCYLLAPPKSVLSVD 909 Query: 604 SYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 + RL L+ + GF +A +DL R G +LG +QSG Sbjct: 910 ARRRLEALETFSELGSGFNLAMQDLDIRGAGNLLGSEQSG 949 >gi|224369910|ref|YP_002604074.1| Mfd [Desulfobacterium autotrophicum HRM2] gi|223692627|gb|ACN15910.1| Mfd [Desulfobacterium autotrophicum HRM2] Length = 1165 Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 145/419 (34%), Positives = 223/419 (53%), Gaps = 25/419 (5%) Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 E +AG++ L ++ K G + + PF T Q AI D+L DM + Sbjct: 582 EKMAGELLKLYAERRVAK--GFAFSRPDHFFNDFEASFPFEETPDQLKAIDDVLVDMESE 639 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351 M R++ GDVG GKT VA+ A AV G Q I+ P ILA+QH ++ N I Sbjct: 640 RPMDRLVCGDVGYGKTEVAIRATFKAVTDGKQVAIVVPTTILAEQHVHTFRERFGNYPIT 699 Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411 VE ++ + + K ++ + G+ ++IGTH L Q I + L L+++DE+ RFGV+ + Sbjct: 700 VESLSRFRTKGEQAKIVKDLEQGKLDVVIGTHRLLQKDIAFKSLGLLVIDEEQRFGVKHK 759 Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471 L ++ ++ VL +TATPIPRTL ++ G DIS I+ P R+PI + I+ D+ Sbjct: 760 EALKKRRSSVDVLALTATPIPRTLHMSLTGMRDISIISTPPVDRQPIVSY---ISEYDDA 816 Query: 472 IE--RLKVVLSEGKKAYWICPQIEE--KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527 I ++ L G + ++I I+ K N + +V IA+ HGR+++ Sbjct: 817 IAAGAIQKELERGGQIFFIHNNIKTIFKTAENLKKLVPEVR---------IAVAHGRLNE 867 Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587 E M F N +L+ TT++E G+D+ A+ +II A+ FGLAQ++QLRGR+GRGE Sbjct: 868 ASLEKAMLQFINREIDMLVCTTIVESGLDIPSANTMIINRADMFGLAQIYQLRGRIGRGE 927 Query: 588 EISSCILLYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 E + L+ P L++++ RL+ L D GF IA +DL+ R G LG QSG Sbjct: 928 E-QAYAYLFVPEEHRLTRDAQKRLAALMEHRDLGSGFQIAMKDLQIRGAGSALGGSQSG 985 >gi|85373850|ref|YP_457912.1| transcription-repair coupling factor [Erythrobacter litoralis HTCC2594] gi|84786933|gb|ABC63115.1| transcription-repair coupling factor [Erythrobacter litoralis HTCC2594] Length = 1162 Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 153/455 (33%), Positives = 244/455 (53%), Gaps = 30/455 (6%) Query: 234 LAGQIALLLMRKQFKKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292 +AG++ ++ KK P+ E + + + P+ T QE+AI D+L+D+ Sbjct: 570 IAGELMKTAAQRALKK---APVLEAEDSVFNQFVEKFPWEETDDQEAAIADVLRDLESGR 626 Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352 M R++ GDVG GKT VAL A A G Q ++AP +LA+QHY+ + + + Sbjct: 627 PMDRLVCGDVGFGKTEVALRAAFVAAMNGQQVAVVAPTTLLARQHYQNFSERFAGFPLKI 686 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 ++ +P + E +A G I++GTHA+ S ++ L LVIVDE+ RFGV + Sbjct: 687 GRLSRLVPSGEMSETREGLAKGDVDIVVGTHAILSKSTEFKNLGLVIVDEEQRFGVTHKE 746 Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 KL Q H+L +TATPIPRTL + G ++S I P R ++T ++ D+++ Sbjct: 747 KLKQLRADVHMLTLTATPIPRTLQMAMTGLRELSTIQTPPVDRLAVRTYVM---EWDDMV 803 Query: 473 ERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII-HGRMSDI 528 R + +L E G +++ + P+I ++ SV E L ++ A+ HG+M Sbjct: 804 MR-EALLREHHRGGQSFIVVPRI-----ADMESVEE---WLRDNVPEVKAVTAHGQMGAA 854 Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588 + E M +F G ++L++TT++E G+D+ A+ III A+ FGLAQL+QLRGRVGR + Sbjct: 855 EIEKRMSAFYEGKYEVLLSTTIVESGLDLPSANTIIIHRADIFGLAQLYQLRGRVGRAKL 914 Query: 589 ISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK 643 + L Y LS+ + RL VL + + GF +A DL R G +LG +QSG + Sbjct: 915 RAYAYLTYAVDTQLSEVAEKRLKVLGDLDSLGAGFQLASHDLDIRGAGNLLGDEQSGHIR 974 Query: 644 ---FLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 F + Q L D+++ A K + L++D D S Sbjct: 975 EVGFELYQSMLEDAIM--AAKAGEAGLSEDRDALS 1007 >gi|258544294|ref|ZP_05704528.1| transcription-repair coupling factor [Cardiobacterium hominis ATCC 15826] gi|258520446|gb|EEV89305.1| transcription-repair coupling factor [Cardiobacterium hominis ATCC 15826] Length = 526 Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 142/356 (39%), Positives = 204/356 (57%), Gaps = 21/356 (5%) Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M RI+ GDVG GKT VA+ A+ AA AG Q ++AP +LA+QHY ++ N + ++ Sbjct: 1 MDRIICGDVGFGKTEVAVRAIHAAASAGYQVALIAPTTLLAEQHYHNLQDRFANHPLTID 60 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++ A ++A+ER+ G +IIGTH L Q IQ+ L LVI+DE+ RFGV+ + K Sbjct: 61 SLSRFKSAADAKRAIERLKAGGTDLIIGTHRLLQKDIQFKNLGLVIIDEEQRFGVRHKEK 120 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII--PINRIDEV 471 L + ++L +TATPIPRTL L G DIS I PAGR+ I+T++ + I + Sbjct: 121 LKSLRSDTNLLTLTATPIPRTLNLALSGLRDISIIATPPAGRQNIQTILAEWDMETIRDA 180 Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDID 529 ER G + Y + I+ +ER L + IAI HG+M + + Sbjct: 181 CEREH---RRGGQTYILHNDIDS---------IERIARLLQDALPEQRIAIGHGQMRERE 228 Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589 E +M +F+N +LIATT+IE GID+ +A+ III A+ GL+QLHQLRGRVGR Sbjct: 229 LEHLMQNFQNRHYDILIATTIIESGIDIPNANTIIINRADKLGLSQLHQLRGRVGRSHHQ 288 Query: 590 SSCILLY--HPPLSKNSYTRL---SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 + L+ L K++ RL + L + GFL+A +DL+ R GEILG +QSG Sbjct: 289 AYAYLITPNWNTLGKDAQRRLEAFTTLDSLGAGFLLASQDLEIRGAGEILGDEQSG 344 >gi|217970622|ref|YP_002355856.1| transcription-repair coupling factor [Thauera sp. MZ1T] gi|217507949|gb|ACK54960.1| transcription-repair coupling factor [Thauera sp. MZ1T] Length = 1157 Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 144/377 (38%), Positives = 204/377 (54%), Gaps = 17/377 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q++AI ++ DM M R++ GDVG GKT VAL A AV G Q V++ P Sbjct: 613 FETTPDQQAAIDAVVADMKSGRPMDRLVCGDVGFGKTEVALRAAFIAVADGKQVVVLCPT 672 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA+QHY+ + I + ++ + +AL+ +A G+ IIIGTH L Q + Sbjct: 673 TLLAEQHYQTFADRFADWPIKLAELSRFKSAKEQAEALQLLAEGKVDIIIGTHRLLQKDV 732 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + +L LVI+DE+HRFGV+Q+ L Q + +L +TATPIPRTL L G + S I Sbjct: 733 IFKRLGLVIIDEEHRFGVRQKEALKQLRSEVDILTLTATPIPRTLGLAMEGLREFSVIAT 792 Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R IKT + P +R I E + R G + Y++ +++ N + +E Sbjct: 793 APQKRLAIKTFVQPSSRGLIREAVLR---EFKRGGQVYFLHNEVDTI--DNMKDDLEEL- 846 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 L E + I + HG++ + + E VM F LL+ TT+IE GI++ A+ III A Sbjct: 847 -LPE---ARIVVGHGQLPERELERVMRDFTQQRANLLLCTTIIETGINIPTANTIIINRA 902 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPL--SKNSYTRLSVLKNTED---GFLIAEE 623 + FGLAQLHQLRGRVGR + LL P S + RL + ED GF +A Sbjct: 903 DRFGLAQLHQLRGRVGRSHHQAYAYLLTQPGAKPSAQAQKRLEAIAMMEDLGSGFYLAMH 962 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R GE+LG QSG Sbjct: 963 DLEIRGAGEVLGENQSG 979 >gi|228471775|ref|ZP_04056548.1| transcription-repair coupling factor [Capnocytophaga gingivalis ATCC 33624] gi|228276928|gb|EEK15623.1| transcription-repair coupling factor [Capnocytophaga gingivalis ATCC 33624] Length = 1110 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 144/414 (34%), Positives = 225/414 (54%), Gaps = 19/414 (4%) Query: 237 QIALLLMRKQFKKE--IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 QIA L++ K+ +G + + +++ + + T Q A ++ QDM + M Sbjct: 515 QIAFNLIQLYAKRREAVGYAFAPDSYLQKELEASFIYEDTPDQSKATLEVKQDMERARPM 574 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R++ GDVG GKT VA+ A AV+ G Q ++ P ILA QHY+ + + + VE Sbjct: 575 DRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPTTILAFQHYQTFCERLKELPVRVEY 634 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 + + + L +A G+ I+IGTH + + ++Y L L+++DE+ +FGV + KL Sbjct: 635 LNRFRTAKEKNQVLADLASGKVDILIGTHQIVNEKVKYKDLGLLVIDEEQKFGVAVKDKL 694 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-E 473 VL +TATPIPRTL + + D+S IT P R PI++ II N +EVI + Sbjct: 695 KTLRENIDVLTLTATPIPRTLQFSLMAARDLSVITTPPPNRYPIESQIISFN--EEVIRD 752 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 + L G + ++I ++E KE +++R + I I HG+M E V Sbjct: 753 GIAYELQRGGQVFFIHNRVENIKE--VAGMIQRLIP-----DAKIGIGHGQMEGKQLEEV 805 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M +F NG +L+ATT+IE G+DV +A+ I I NA+HFGL+ LHQ+RGRVGR + + C Sbjct: 806 MLAFINGDYDILVATTIIESGLDVPNANTIFIHNAQHFGLSDLHQMRGRVGRSNKKAFCY 865 Query: 594 LLYHPPLS---KNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 + P LS ++S R+ + D G IA +DL+ R G++LG +QSG Sbjct: 866 FI-TPNLSELPEDSRKRMQAIAQFSDLGSGIHIAMKDLEIRGAGDLLGGEQSGF 918 >gi|78224730|ref|YP_386477.1| transcription-repair coupling factor [Geobacter metallireducens GS-15] gi|78195985|gb|ABB33752.1| transcription-repair coupling factor [Geobacter metallireducens GS-15] Length = 1158 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 134/380 (35%), Positives = 210/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + + T Q SAI D++ DM+ M R++ GDVG GKT VA+ AV G Q ++ Sbjct: 616 SFAYEETSDQMSAIMDVIGDMTSAKPMDRLVCGDVGYGKTEVAMRGAFKAVMDGKQVAVL 675 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH E K + VE+++ +++ LE++ G +IIGTH L Q Sbjct: 676 VPTTVLAQQHLETFKARLGAYPVTVEMLSRFRTPKEQKEILEKVKKGAIDVIIGTHRLLQ 735 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + + L L+IVDE+ RFGV + KL + +L +TATPIPRTL ++ +G D+S Sbjct: 736 SDVTFKDLGLLIVDEEQRFGVTHKEKLKKYKAVVDILTLTATPIPRTLYMSMMGIRDLSI 795 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVE 505 I P R +KT + + D + E + L G + +++ +++ + R +V Sbjct: 796 IDTPPVDRLAVKT-FVARSSDDLIREAVMRELRRGGQIFFVHNRVQSIMNWAEHLRRIVP 854 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + IA+ HG+M + + E VM F +G LL+ TT+IE G+D+ +A+ +II Sbjct: 855 E---------AKIAVGHGQMDEGELEKVMLGFMHGETNLLLCTTIIESGLDIPNANTLII 905 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLI 620 + A+ FGLAQL+QLRGRVGR ++ + LL +S ++ RL +++ + GF + Sbjct: 906 DRADTFGLAQLYQLRGRVGRSKQRAYAYLLIPGEGAISSDARERLKIIQELTELGAGFRL 965 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R G+ILG KQSG Sbjct: 966 ATHDLEIRGAGDILGAKQSG 985 >gi|104773517|ref|YP_618497.1| transcription-repair coupling factor [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422598|emb|CAI97201.1| Transcription-repair coupling factor [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 1158 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 140/430 (32%), Positives = 223/430 (51%), Gaps = 19/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW + A E +A + L +++ +K G + +G P+ PT Q Sbjct: 557 EWAKTKKRVAARVEDIADDLIELYAKREAEK--GFAFSPDGSDQAAFEAAFPYEPTPDQL 614 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 A +I DM + M R+L GDVG GKT VA+ A A+ G Q + P ILAQQHY Sbjct: 615 RATAEIKADMEKAKPMDRLLVGDVGFGKTEVAMRAAFKAICDGKQVAFLVPTTILAQQHY 674 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + IK + + + + QA +K + + G +++GTH + +Q L L+ Sbjct: 675 QTIKDRFKGFPVEIASFSRFQGQAESKKIVAGLKDGSIDLVVGTHRILSKDVQLKDLGLL 734 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV + KL Q T VL +TATPIPRTL ++ +G D+S + P R PI Sbjct: 735 IIDEEQRFGVAHKEKLKQLKTNIDVLTLTATPIPRTLHMSMIGIRDLSVMETPPQNRYPI 794 Query: 459 KTVIIPI--NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T ++ + E +R + G + +++ ++ + +E+ V R L + Sbjct: 795 QTYVLEQLPGTVKEACQR---EMQRGGQVFYLHNRVGDIEET-----VARLEQLLPE--A 844 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 IA HG+MS+ E ++ F + +L+ TT+IE GID+ + + +IIE+A+H+GL+QL Sbjct: 845 RIAYAHGQMSENQLEDILSRFLDREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQL 904 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 +QLRGR+GR ++ LY P L++ RL +++ + GF IA DL R G Sbjct: 905 YQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGAGFKIAMRDLSIRGAG 964 Query: 632 EILGIKQSGM 641 +LG +Q G Sbjct: 965 NMLGAQQHGF 974 >gi|296116131|ref|ZP_06834749.1| transcription-repair coupling factor [Gluconacetobacter hansenii ATCC 23769] gi|295977237|gb|EFG83997.1| transcription-repair coupling factor [Gluconacetobacter hansenii ATCC 23769] Length = 1157 Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 151/421 (35%), Positives = 222/421 (52%), Gaps = 33/421 (7%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T+ Q AI D+L DM+ M R++ GDVG GKT VAL A A +GGQ ++ P Sbjct: 604 PFVETEDQSRAIADVLDDMASGRPMDRLVCGDVGFGKTEVALRAAFVAAMSGGQVAVVVP 663 Query: 330 IGILAQQHYEFIKKYTQNTQIIV----EIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +LA+QHY + I V ++TG A R K LE G +I+IGTHAL Sbjct: 664 TTLLARQHYRTFAARFADLPIKVAQLSRMVTGKDATAVR-KGLE---DGTVNIVIGTHAL 719 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445 ++++ L L+IVDE+ FGV + KL HVL ++ATP+PRTL L G ++ Sbjct: 720 LAKTVKFADLGLLIVDEEQHFGVAHKEKLKALREDVHVLTLSATPLPRTLQLALTGVREM 779 Query: 446 SKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503 S I P R ++T I+P + I E I+R + G + + + P+IE+ R Sbjct: 780 SLIATPPTDRLAVRTFIMPFDSVVIREAIQRERF---RGGQVFCVVPRIEDLDRMATR-- 834 Query: 504 VERFNSLHEHFTSSIAI-IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 LHE + + HGR++ + E VM F +G +L++T ++E G+D+ + Sbjct: 835 ------LHEIVPDARMVQAHGRLTPTELERVMTEFSDGKYDILLSTNIVESGLDMPAVNT 888 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617 +II A+ FGL QL+QLRGRVGRG++ L + LS + RL V++ + G Sbjct: 889 LIIHRADMFGLGQLYQLRGRVGRGKQRGYAYLTWPQTHILSAAAQKRLEVMQTLDTLGAG 948 Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH----ILTQDPDL 673 F +A DL R G +LG +QSG + + EL+ +LE A D +H T+D D Sbjct: 949 FTLASHDLDLRGAGNLLGDEQSGHIREV--GIELYQQMLEDAVADLRHEKGRRKTEDRDW 1006 Query: 674 T 674 T Sbjct: 1007 T 1007 >gi|145219954|ref|YP_001130663.1| transcription-repair coupling factor [Prosthecochloris vibrioformis DSM 265] gi|145206118|gb|ABP37161.1| transcription-repair coupling factor [Chlorobium phaeovibrioides DSM 265] Length = 1112 Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 146/463 (31%), Positives = 249/463 (53%), Gaps = 24/463 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W AR+ ++L I L+ + Q K + G + ++ + F T Q Sbjct: 486 KWA--ARKEKVRNKLRDIAINLIKLYAQRKMQPGFAFGPDSIFMREFEASFIFDETPDQH 543 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 AI+++ +DM + M R++ GD G GKT +A+ A AVE+ QA I+ P ILA QH Sbjct: 544 KAIEELKKDMQAPHPMDRLICGDAGFGKTEIAMRAAFKAVESKKQAAILTPTTILAHQHA 603 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + +N I + +++ +P+A +++ L++IA G I+IGTH L +Q+ L L+ Sbjct: 604 ETFARRFENFPITIAVLSRFVPRAEQKETLKKIAAGTVDIVIGTHRLVSKDVQFNDLGLL 663 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 ++DE+ FGV+ + KL ++ L M+ATPIPRTL + LG D+S ++ P R+P+ Sbjct: 664 VIDEEQHFGVEVKEKLREQFPGVDTLTMSATPIPRTLQFSMLGARDLSIVSTPPKNRQPV 723 Query: 459 KTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515 +T+I + E+IE ++ ++ + +++ ++ E+ + R +V + Sbjct: 724 ETLITDYDA--ELIETAIRREINRDGQVFFLHNRVAGLEEMQRTIRELVP---------S 772 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + I HG+M + E +M +LI+TT+I G+D+ +A+ III A+ FGL+ Sbjct: 773 ARIVYAHGQMPARELEKIMMDVMQKEVDVLISTTIIGSGLDISNANTIIINRADMFGLSD 832 Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGRVGR E + C L+ P L + + RL+V+++ TE GF IA DL R Sbjct: 833 LYQLRGRVGRSERKAYCYLITPPLHTLKREAVQRLAVIESFTELGSGFSIALRDLDIRGA 892 Query: 631 GEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQD 670 G +LG +QSG F + Q L +++ + + H+ + D Sbjct: 893 GNLLGAEQSGYIHELGFDLYQKMLEETVAGLKSTEFSHLFSGD 935 >gi|326489969|dbj|BAJ94058.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 826 Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 132/379 (34%), Positives = 213/379 (56%), Gaps = 17/379 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 P+ PT Q A DI D++++ M R++ GDVG GKT VA+ A+ V G QA+++A Sbjct: 270 PYEPTPDQNQAFIDIENDLTERETPMDRLICGDVGFGKTEVAMRAIFIVVSTGYQAMVLA 329 Query: 329 PIGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILA QH++ + ++++ I V I +G + + + + +I +G II+GTHAL Sbjct: 330 PTVILANQHFDVMSERFSNYPDIKVAIFSGAQSKDEKDELITKITNGHLQIIVGTHALLT 389 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + + Y L L++VDE+ +FGVQQ+ K+ + VL ++ATPIPRTL L G D S Sbjct: 390 ERMAYNNLGLLVVDEEQKFGVQQKEKIASLKASIDVLTLSATPIPRTLYLALTGFRDASL 449 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 ++ P R +KT + +R + + +K+ L G + +++ P+I +++ + Sbjct: 450 MSTPPPERVAVKTYVSAFSR-ESALSAIKLELKRGGQVFYVVPRI--------KAIDDVL 500 Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 L + +AI HG+ + + M+ F G K+L+ T +IE GID+ +A+ +I++ Sbjct: 501 QFLKDSLPDVPMAIAHGKKVSKNIQLAMEKFSCGEIKILVCTHIIESGIDIPNANTMIVQ 560 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIA 621 AE FGLAQL+QLRGRVGR L Y LS+ + RL ++ D GF +A Sbjct: 561 YAELFGLAQLYQLRGRVGRSGREGFTHLFYTDKSLLSRIAMDRLGAIEEHSDLGQGFHVA 620 Query: 622 EEDLKQRKEGEILGIKQSG 640 E+D+ R G + G +QSG Sbjct: 621 EKDMGIRGFGSMFGEQQSG 639 >gi|325265261|ref|ZP_08131986.1| transcription-repair coupling factor [Clostridium sp. D5] gi|324029440|gb|EGB90730.1| transcription-repair coupling factor [Clostridium sp. D5] Length = 1119 Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 210/371 (56%), Gaps = 15/371 (4%) Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 Q AI D +DM K M R++ GDVG GKT +A+ A AV+ G Q V + P ILAQ Sbjct: 575 DQLQAIADTKRDMESKKIMDRLICGDVGYGKTEIAIRAAFKAVQEGKQVVYLVPTTILAQ 634 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 QHY + ++ + +++ A ++K +E + G I+IGTH + +Q+ L Sbjct: 635 QHYNTFVQRMKDFPVRADLLCRFRTSAQQKKTVEDLKKGLVDIVIGTHRVLSKDVQFKDL 694 Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 L+I+DE+ RFGV + K+ + VL +TATPIPRTL ++ +G D+S + E P R Sbjct: 695 GLLIIDEEQRFGVTHKEKIKKLRENVDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPMDR 754 Query: 456 KPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 PI+T ++ N DE++ E ++ LS + Y++ ++ S+ V R L Sbjct: 755 MPIQTYVMEYN--DEMVREAIERELSRDGQVYYVYNRV-----SDIADVAGRIQKLVPD- 806 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 ++++ HG+M++ E++M F NG +L++TT+IE G+D+ + + +II +A+ GL+ Sbjct: 807 -AAVSFAHGQMNERQLENIMYDFINGDIDVLVSTTIIETGLDISNVNTMIIHDADRLGLS 865 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629 QL+QLRGRVGR ++ LLY L + + RL+ ++ D GF IA DL+ R Sbjct: 866 QLYQLRGRVGRSSRMAYAFLLYRKDKLLKEVAEKRLAAIREFTDLGSGFKIAMRDLEIRG 925 Query: 630 EGEILGIKQSG 640 G +LG +Q G Sbjct: 926 AGNLLGEEQHG 936 >gi|291059734|gb|ADD72469.1| transcription-repair coupling factor [Treponema pallidum subsp. pallidum str. Chicago] Length = 1155 Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 136/376 (36%), Positives = 214/376 (56%), Gaps = 13/376 (3%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q I+++ QDM + M R++ GDVG GKT +A+ A AV G Q V + P Sbjct: 612 PYEETDDQRICIEEVKQDMQEAVPMDRLVCGDVGYGKTEIAMRAAFKAVMGGKQVVFLTP 671 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +L +QH+ I ++ + +E ++ +P++ ++ L ++AHG +I+GTH L Q Sbjct: 672 TTLLVEQHFRTICNRFKHFPVRIEKLSRFVPKSEQKDILAKLAHGDIDLIVGTHRLIQKD 731 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGVQ + KL Q T L ++ATPIPRTL + L D+S +T Sbjct: 732 VSFKDLGLMILDEEQRFGVQDKEKLKQMKTNVDCLSLSATPIPRTLHMGMLKIRDMSLLT 791 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P GR PI+TVI + + V ++ L + +++ +IE N SV Sbjct: 792 TPPEGRLPIETVIQQFDP-NLVATAIRKELDREGQIFYLHNRIE-----NLESVKCMLQK 845 Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 L SI + H M + E + + F T +LL++TT+IE GIDV +A+ III+ A+ Sbjct: 846 LVPEL--SICVAHSLMGSEELEDIFERFYQKTFQLLLSTTIIENGIDVPNANTIIIDRAD 903 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEED 624 +G++QL+QLRGRVGR ++ + LLY+ LS + RL V+ + D GF +A +D Sbjct: 904 MYGVSQLYQLRGRVGRSDKKAYAYLLYYHDVALSDLAIKRLQVISDFTDLGAGFKVALKD 963 Query: 625 LKQRKEGEILGIKQSG 640 ++ R G +LG +QSG Sbjct: 964 MEIRGVGNLLGKEQSG 979 >gi|28209962|ref|NP_780906.1| transcription-repair coupling factor [Clostridium tetani E88] gi|28202397|gb|AAO34843.1| transcription-repair coupling factor [Clostridium tetani E88] Length = 1030 Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 142/429 (33%), Positives = 231/429 (53%), Gaps = 19/429 (4%) Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EWT + + + + +E+ + L +R K G + + ++ P T Q Sbjct: 581 EWTKTKNKAKKSIEEIAEDLVNLYAVRSTLK---GYKFSKDTVWQRQFEEEFPHEETPDQ 637 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 +AI++I DM M R+L GDVG GKT VAL A +V G Q + P ILAQQH Sbjct: 638 ITAIEEIKNDMQSNRTMDRLLCGDVGYGKTEVALRAAFKSVMDGKQVAFLVPTTILAQQH 697 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y + K + I +E+++ A + ++ + G I+IGTH + Q +Q+ L L Sbjct: 698 YNNLLKRFSDFPINIEMVSRFRTSAQQNATMKALKEGNIDILIGTHRILQKDVQFKDLGL 757 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +++DE+ RFGV+ + K+ + VL +TATPIPRTL ++ +G DIS I P R P Sbjct: 758 LVIDEEQRFGVKHKEKIKEFKKNVDVLTLTATPIPRTLHMSLVGVRDISIIETPPEDRYP 817 Query: 458 IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 I+T ++ N D++I + + L+ G + Y++ ++E N + + + L + Sbjct: 818 IQTYVVEYN--DQLIRDAILRELNRGGQIYFVYNRVE-----NIKEIATHVSKLVPE--A 868 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 + I HG+M + + E V+ F N +L+ATT+IE G+D+ + + +II +++ GL+QL Sbjct: 869 KVGIAHGQMKERELEKVVMDFMNKEHDILVATTIIETGMDIQNVNTMIIYDSDKMGLSQL 928 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGRVGR ++ C L Y L++ + RL +K TE GF IA +DL+ R G Sbjct: 929 YQLRGRVGRSSRMAYCYLTYKKDKILTEVAEKRLKAIKEFTELGSGFKIALKDLEIRGAG 988 Query: 632 EILGIKQSG 640 ++G Q G Sbjct: 989 NMMGSSQHG 997 >gi|228989261|ref|ZP_04149254.1| Transcription-repair-coupling factor [Bacillus pseudomycoides DSM 12442] gi|228770471|gb|EEM19042.1| Transcription-repair-coupling factor [Bacillus pseudomycoides DSM 12442] Length = 1176 Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 138/387 (35%), Positives = 216/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I++I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 614 QEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N I E IER L+ G + Y++ ++E E+K Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPGLIREAIER---ELARGGQIYFLYNRVEDIERKAD 850 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF +G +L++TT+IE G+D+ Sbjct: 851 EISMLVPE---------ARVTYAHGKMNESELESVMLSFLDGQHDVLVSTTIIETGVDIP 901 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988 >gi|116070624|ref|ZP_01467893.1| Transcription-repair coupling factor [Synechococcus sp. BL107] gi|116066029|gb|EAU71786.1| Transcription-repair coupling factor [Synechococcus sp. BL107] Length = 1192 Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 137/422 (32%), Positives = 227/422 (53%), Gaps = 22/422 (5%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G +G ++ + P+ PT Q + D+ +DM + M R++ GDVG GKT VA+ Sbjct: 601 GFAFPPDGPWQTELEESFPYEPTPDQLKSTTDVKRDMERAEPMDRLVCGDVGFGKTEVAI 660 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A+ A+ AG Q ++AP +LAQQH+ + + I V ++ R+ LE + Sbjct: 661 RAIFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYPIKVALLNRFRTTTERKSILEGL 720 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 G ++GTH L + +L L++VDE+ RFGV Q+ K+ VL ++ATPI Sbjct: 721 KQGTIDAVVGTHQLLSKGTSFQQLGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPI 780 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491 PRTL ++ G ++S IT P R+PIKT + ++ + V ++ L G + +++ P+ Sbjct: 781 PRTLYMSLSGVREMSLITTPPPLRRPIKTHLASLD-PEAVRSAIRQELDRGGQVFYVVPR 839 Query: 492 IE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549 +E E + R+++ L + HG+M++ + ES M +F G +++ TT Sbjct: 840 VEGIEDVATGLRAMLPGLKLL---------VAHGQMAEGELESAMVAFNAGEADVMLCTT 890 Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYT 606 ++E G+D+ + I+IE+A FGLAQL+QLRGRVGR I + L++P LS N+ Sbjct: 891 IVESGLDIPRVNTILIEDAHRFGLAQLYQLRGRVGR-SGIQAHAWLFYPGNASLSDNARQ 949 Query: 607 RLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIAR 660 RL ++ G+ +A D++ R G +LG++QSG + F + L +SL EI Sbjct: 950 RLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQG 1009 Query: 661 KD 662 +D Sbjct: 1010 QD 1011 >gi|312128223|ref|YP_003993097.1| transcription-repair coupling factor [Caldicellulosiruptor hydrothermalis 108] gi|311778242|gb|ADQ07728.1| transcription-repair coupling factor [Caldicellulosiruptor hydrothermalis 108] Length = 1141 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 142/429 (33%), Positives = 235/429 (54%), Gaps = 18/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW ++ E++A + L ++Q K G + + ++ P++ T+ Q Sbjct: 554 EWQKQKQKVRKSLEVVAKDLVELYAKRQLNK--GFKFSKDTVWQKEFEERFPYTETEGQL 611 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 AI++I +DM + M RIL GDVG GKT VA+ A AV Q ++ P ILAQQHY Sbjct: 612 QAIEEIKRDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVLVPTTILAQQHY 671 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 ++ + +E+++ + ++K ++ + G I+IGTH L +++ L L+ Sbjct: 672 MTFSARMKDFPVTIEVLSRLKNETQQKKIIKGLKEGTIDIVIGTHRLLSSDVKFKDLGLL 731 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+H+FGV+ + K+ + T VL +TATPIPRTL + LG D+S I + P R P+ Sbjct: 732 IIDEEHKFGVEAKEKIKKLKTNVDVLTLTATPIPRTLNMALLGIRDLSVIEDPPEDRYPV 791 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T ++ N I E I LK + S G + +++ ++++ +E V + +L + Sbjct: 792 QTFVLEYNERIIKEAI--LKEI-SRGGQVFYLYNRVKDIQE-----VAAKLQNLVGD-SV 842 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 IA HG+M + + E V+ F G +L+ TT+IE G+D+ + + +I+E+++ GLAQL Sbjct: 843 KIACAHGQMEEEELEEVLIDFIEGRYDVLVCTTIIESGVDMPNVNTLIVEDSDRLGLAQL 902 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGRVGR ++ + LS+ + RL+ +K TE GF IA DL+ R G Sbjct: 903 YQLRGRVGRSSRLAYAYFTFRKDKVLSEQAQKRLAAIKEFTELGSGFKIAMRDLEIRGAG 962 Query: 632 EILGIKQSG 640 I+G Q G Sbjct: 963 SIVGKLQHG 971 >gi|167894791|ref|ZP_02482193.1| transcription-repair coupling factor [Burkholderia pseudomallei 7894] Length = 649 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 154/432 (35%), Positives = 225/432 (52%), Gaps = 25/432 (5%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K + F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q Sbjct: 87 KFADSFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 146 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 +++P +LA+QH + + + + ++ A+ +I G I+IGTH Sbjct: 147 VALLSPTTLLAEQHTQTFADRFADWPVRIAELSRFKTAKEVNAAIAQINEGSVDIVIGTH 206 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443 L +Q+ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G Sbjct: 207 KLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLR 266 Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFR 501 D S I P R IKT + R +E + R ++ L G + Y++ ++E Sbjct: 267 DFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVE-------- 315 Query: 502 SVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 +E ++ E + I I HG+M + + E VM F +L+ TT+IE GIDV Sbjct: 316 -TIENRKAMLEELVPEARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPS 374 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616 A+ II+ A+ FGLAQLHQLRGRVGR + LL H P L+K + RL ++ E+ Sbjct: 375 ANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEEL 434 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 GF +A DL+ R GE+LG KQSG + Q L+ +L A K K+ ++PDLT Sbjct: 435 GSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLT 490 Query: 675 SVRGQSIRILLY 686 + + I L+ Sbjct: 491 APLAATTEINLH 502 >gi|71907594|ref|YP_285181.1| transcription-repair coupling factor [Dechloromonas aromatica RCB] gi|71847215|gb|AAZ46711.1| transcription-repair coupling factor [Dechloromonas aromatica RCB] Length = 1147 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 140/378 (37%), Positives = 206/378 (54%), Gaps = 19/378 (5%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q AI +++DM M R++ GDVG GKT VAL A AV G Q ++ P Sbjct: 596 FEETHDQAQAIAAVIEDMRSGKPMDRLVCGDVGFGKTEVALRAAFCAVAGGKQVAVLCPT 655 Query: 331 GILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +L +QHY+ F+ ++ I EI + +AL+ +A G+ +IIGTH L Sbjct: 656 TLLCEQHYQTFVDRFADWPVKIAEISRFKTAK-ESAQALQELAEGKIDVIIGTHKLIGKD 714 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +++ +L LV++DE+HRFGV+Q+ L VL +TATPIPRTL ++ G D S I Sbjct: 715 VKFQRLGLVVIDEEHRFGVRQKETLKAMRAEVDVLTLTATPIPRTLAMSMEGLRDFSVIA 774 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R IKT +++ + I R V+ L G + Y++ +++ + N R +E+ Sbjct: 775 TAPQKRLAIKTF---VSKFSDGIIREAVLRELKRGGQVYFLHNEVDTIE--NMREKLEKL 829 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + I I HG+M++ + E VM F LL+ TT+IE GID A+ I+I Sbjct: 830 VP-----EARIVIGHGQMNERELERVMRDFTQQRANLLLCTTIIETGIDNPHANTILINR 884 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAE 622 +E FGLAQLHQLRGRVGR + LL ++K + RL ++ +E+ GF +A Sbjct: 885 SEKFGLAQLHQLRGRVGRSHHQAYAYLLVQDEKAMTKQAKQRLEAIQMSEELGSGFFLAM 944 Query: 623 EDLKQRKEGEILGIKQSG 640 DL+ R GE+LG QSG Sbjct: 945 HDLEIRGAGEVLGDNQSG 962 >gi|84503554|ref|ZP_01001605.1| transcription-repair coupling factor [Oceanicola batsensis HTCC2597] gi|84388044|gb|EAQ01092.1| transcription-repair coupling factor [Oceanicola batsensis HTCC2597] Length = 1152 Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 145/398 (36%), Positives = 226/398 (56%), Gaps = 21/398 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +AI+D++ DM + M R++ GDVG GKT VAL A A +G Q ++AP Sbjct: 599 PYQETDDQLAAIEDVMTDMLSGHPMDRLICGDVGFGKTEVALRAAFVAAMSGVQVAVIAP 658 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHY+ + + + V ++ + Q + E +A G I++GTHAL S Sbjct: 659 TTLLARQHYQGFAERFRGFPLQVSPLSRFVSQKEADRTREGLAKGTVDIVVGTHALLAKS 718 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I+++ L L+IVDE+ RFGV + +L Q + HVL +TATPIPRTL L+ G D+S I Sbjct: 719 IRFHNLGLLIVDEEQRFGVGHKERLKQLKSDVHVLTLTATPIPRTLQLSLSGVRDLSIIG 778 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R I+T ++ D V R + +L E G +++++ P+I + E VE Sbjct: 779 TPPIDRLAIRTY---VSEFDAVTIR-EALLRERYRGGQSFYVVPRISDLAE------VEE 828 Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 F E S + HG+M+ + + M++F +G +L+ATT++E G+D+ A+ II+ Sbjct: 829 FLK-AEVPEVSYVVAHGQMAAGELDQRMNAFYDGKFDVLLATTIVESGLDIPRANTIIVH 887 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIA 621 A+ FGLAQL+Q+RGRVGR + + L P L+ + RL VL + + GF +A Sbjct: 888 RADMFGLAQLYQIRGRVGRAKTRAYAYLTTKPRVRLTPAAEKRLKVLGSLDTLGAGFTLA 947 Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 +DL R G +LG +QSG + + EL+ ++LE A Sbjct: 948 SQDLDIRGAGNLLGEEQSGNMRDV--GYELYQTMLEEA 983 >gi|150014978|ref|YP_001307232.1| transcription-repair coupling factor [Clostridium beijerinckii NCIMB 8052] gi|149901443|gb|ABR32276.1| transcription-repair coupling factor [Clostridium beijerinckii NCIMB 8052] Length = 1166 Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 148/433 (34%), Positives = 232/433 (53%), Gaps = 27/433 (6%) Query: 219 EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EW + A+ R + +E+ + L MR K G + + + ++ PF T Q Sbjct: 574 EWQKAKAKARKSINEIAEDLVKLYAMRSTVK---GHKFSKDTEWQKQFEDEFPFEETPDQ 630 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 +++++I DM M R+L GDVG GKT VA+ A AV G Q ++ P ILA+QH Sbjct: 631 LTSLEEIKIDMESDKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVALLVPTTILAEQH 690 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y+ IK + I +++++ +++ L+++ G I+IGTH L IQ+ L L Sbjct: 691 YKNIKNRFSDFPIKIDMVSRFRTAKQQKEILQKVKEGNLDILIGTHRLVSKDIQFKDLGL 750 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +IVDE+ RFGV+Q+ K+ VL ++ATPIPRTL ++ G DIS I P R P Sbjct: 751 LIVDEEQRFGVKQKEKIKGIKKNVDVLTLSATPIPRTLHMSLSGVRDISVIETPPEERYP 810 Query: 458 IKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 ++T ++ N D++I +L E G + Y++ ++E+ +ER + Sbjct: 811 VQTYVVEQN--DQLIR--DAILREIGRGGQVYFVYNRVED---------IERMAKYVQSL 857 Query: 515 T--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 S + I HG+M++ E M F + +L+ TT+IE G+D+ + + III +A+ G Sbjct: 858 VPESKVGIAHGQMAERQLEKEMFDFMSEEYNVLVCTTIIETGMDIQNVNTIIIYDADKMG 917 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQ 627 L+QL+QLRGRVGR I+ LLY L++ + RL LK+ TE GF IA DL+ Sbjct: 918 LSQLYQLRGRVGRSNRIAYAYLLYTKDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEI 977 Query: 628 RKEGEILGIKQSG 640 R G ++G Q G Sbjct: 978 RGAGNMMGSSQHG 990 >gi|210632030|ref|ZP_03297170.1| hypothetical protein COLSTE_01063 [Collinsella stercoris DSM 13279] gi|210159746|gb|EEA90717.1| hypothetical protein COLSTE_01063 [Collinsella stercoris DSM 13279] Length = 1195 Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 134/378 (35%), Positives = 203/378 (53%), Gaps = 13/378 (3%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q AI DI DM M R+L GDVG GKT VAL A V+ G Q +++ Sbjct: 631 SFPYDETHDQLDAIADIKADMESTKPMDRLLCGDVGFGKTEVALRAAFKCVDGGRQVMVL 690 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + VE+++ +R+AL A G+ ++IGTH L Sbjct: 691 CPTTILAQQHYETFFERFAPFGVEVEVLSRFRTPGQQRRALAAFAEGKVDVLIGTHRLLS 750 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + ++L LVI+DE+ RFGVQ + +L VL ++ATPIPRT+ + G D+S Sbjct: 751 ADVNPHELGLVIIDEEQRFGVQHKEQLKNMREQIDVLTLSATPIPRTMQMAMSGVRDMSL 810 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 IT P GR+ + + + D V +++ + G + Y++ +++ VER Sbjct: 811 ITTPPTGRRAVAVHVGEYD-PDVVSAAIRLEIGRGGQVYYVSNRVK-----TIDDAVERV 864 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 L + I + HG+MS + E VM F +LIATT++E GID A+ +IIE+ Sbjct: 865 --LEAAPEARIGVAHGKMSPREVEDVMVQFATKKIDVLIATTIVESGIDNASANTLIIED 922 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAE 622 ++ GLAQL+QL+GRVGR + ++ PL++ + RL+ L +D G IA Sbjct: 923 SQRLGLAQLYQLKGRVGRSATQAYAYFMFPGELPLTEEATARLTALSEFQDLGSGMRIAM 982 Query: 623 EDLKQRKEGEILGIKQSG 640 DL+ R G ++G +Q G Sbjct: 983 RDLEIRGAGSLVGAEQHG 1000 >gi|259507006|ref|ZP_05749906.1| transcription-repair coupling factor [Corynebacterium efficiens YS-314] gi|259165458|gb|EEW50012.1| transcription-repair coupling factor [Corynebacterium efficiens YS-314] Length = 1215 Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 136/429 (31%), Positives = 224/429 (52%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W + ++ A +AG++ L ++Q G + +++ N P+ T+ Q Sbjct: 585 DWKNTKKKARAAVREIAGELVELYAKRQAAP--GHAFGPDTPWQKEMEDNFPYVETEDQM 642 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 AI + +DM + M R++ GDVG GKT VA+ A AV+ G Q ++ P +LAQQH Sbjct: 643 LAIDAVKEDMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHK 702 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 ++ + + ++ A ++ L +A G+ I++GTH L Q +Q+ L LV Sbjct: 703 STFEERMAGFPVTIHGLSRFTSTAESKETLAGLASGEVDIVVGTHRLLQTGVQWKNLGLV 762 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + + + VL M+ATPIPRTL ++ G +++ + P R PI Sbjct: 763 IVDEEQRFGVEHKEHIKALRSHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHPI 822 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516 T + P +V ++ L + ++I ++ EKK R +V + Sbjct: 823 LTYVGPYED-KQVAASIRRELLRDGQVFFIHNKVADIEKKARELRDLVPE---------A 872 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 + + HG+MS+ E + F + +L+ TT++E G+D+ +A+ +I+ENA H GL+QL Sbjct: 873 RVVVAHGQMSEELLEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQL 932 Query: 577 HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 HQLRGRVGR E LY L++ SY RL+ + D G +A +DL+ R G Sbjct: 933 HQLRGRVGRSRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAG 992 Query: 632 EILGIKQSG 640 +LG +QSG Sbjct: 993 NVLGAEQSG 1001 >gi|254281663|ref|ZP_04956631.1| transcription-repair coupling factor [gamma proteobacterium NOR51-B] gi|219677866|gb|EED34215.1| transcription-repair coupling factor [gamma proteobacterium NOR51-B] Length = 1155 Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 141/429 (32%), Positives = 221/429 (51%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W R+ +A Q+ + R++ ++ G E + PF T Q Sbjct: 552 QWEKARRKASKRASDVAAQLLEVYARREARQ--GFAHAWEPDAWDRFCNQFPFEETPDQA 609 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI+ + DM M R++ GDVG GKT VA+ A A G Q ++ P +LAQQH+ Sbjct: 610 AAIEAVRNDMCAPGVMDRLVCGDVGFGKTEVAMRAAFLAARNGKQVAVLVPTTLLAQQHF 669 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + VE+I+ +R+ G I++GTH L Q ++ L L+ Sbjct: 670 NSFRDRFAGWSVTVEVISRFKTAKDIAAVAKRVESGDVDILVGTHKLLQTDFRFNDLGLL 729 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+HRFGV+Q+ + +L MTATPIPRTL + G D+S I PA R I Sbjct: 730 IIDEEHRFGVKQKESIKALRAEIDILTMTATPIPRTLNMALGGLRDLSIIATPPARRLSI 789 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 KT I N + E + R + G + Y++ +++ ++ ++ +L Sbjct: 790 KTFIREHNTALVKEAVLRETL---RGGQVYYLHNEVKTIAQT-----AQKLQTLLPDL-- 839 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 S+ I HG+M +++ E VM F + +L+ +T+IE GID+ +A+ IIIE A+ FGLAQL Sbjct: 840 SVGIAHGQMREVELERVMSDFYHQRHHVLVCSTIIETGIDIPNANTIIIERADKFGLAQL 899 Query: 577 HQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEG 631 HQLRGRVGR + LL P L++++ RL ++ G+++A DL+ R G Sbjct: 900 HQLRGRVGRSHHQAYAYLLSPPRSSLTRDAEKRLEAIEAAGALGAGYMLATHDLEIRGAG 959 Query: 632 EILGIKQSG 640 E+LG +QSG Sbjct: 960 ELLGDEQSG 968 >gi|228995444|ref|ZP_04155114.1| Transcription-repair-coupling factor [Bacillus mycoides Rock3-17] gi|228764305|gb|EEM13182.1| Transcription-repair-coupling factor [Bacillus mycoides Rock3-17] Length = 1183 Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 138/387 (35%), Positives = 216/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I++I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 621 QEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 680 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 681 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 740 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 741 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 800 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N I E IER L+ G + Y++ ++E E+K Sbjct: 801 RDLSVIETPPENRFPVQTYVVEYNPGLIREAIER---ELARGGQIYFLYNRVEDIERKAD 857 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF +G +L++TT+IE G+D+ Sbjct: 858 EISMLVPE---------ARVTYAHGKMNESELESVMLSFLDGQHDVLVSTTIIETGVDIP 908 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 909 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 968 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 969 LGSGFKIAMRDLSIRGAGNLLGAEQHG 995 >gi|194337173|ref|YP_002018967.1| transcription-repair coupling factor [Pelodictyon phaeoclathratiforme BU-1] gi|194309650|gb|ACF44350.1| transcription-repair coupling factor [Pelodictyon phaeoclathratiforme BU-1] Length = 1103 Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 147/461 (31%), Positives = 246/461 (53%), Gaps = 22/461 (4%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 I L+ + Q K +IG + ++ + F T Q AI D+ +DM + + M R+ Sbjct: 497 INLIKVYAQRKMQIGFGFAPDSIYMREFEASFIFDETPDQLKAIHDVKKDMQEPHPMDRL 556 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 + GD G GKT +A+ A AVE+G Q ++ P IL+ QH E + +N I + +++ Sbjct: 557 ICGDAGFGKTEIAMRAAFKAVESGKQVAVLTPTTILSHQHAESFTRRFENFPISIAVLSR 616 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 +P+ ++K ++RIA G I+IGTH L + + L L+++DE+ FGV+ + KL ++ Sbjct: 617 FVPRKEQQKVIKRIAEGTIDIVIGTHRLVSKDVLFKDLGLLVIDEEQHFGVEVKEKLREQ 676 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERL 475 L M+ATPIPRTL + LG D+S ++ P R+P++T+I + I I R Sbjct: 677 FPGVDTLTMSATPIPRTLQFSMLGARDLSIVSTPPKNRQPVETLITDYDPALIQSAIRR- 735 Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVM 534 + EG + +++ +I S+ + +L E S+ I HG++ + E +M Sbjct: 736 -EIKREG-QVFFLHNRIA--------SLDDILQTLRELVPSARIVFAHGQLPPRELEKIM 785 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F +LI+TT+I G+D+ +A+ III A+ FGL+ L+QLRGRVGR E + C L Sbjct: 786 MDFMQKEVDVLISTTIIGSGLDISNANTIIINRADMFGLSDLYQLRGRVGRSERKAYCYL 845 Query: 595 LYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGM---PKFLI 646 + P L K + RL+V+++ TE GF IA DL R G +LG +QSG F + Sbjct: 846 IAPPLNTLKKEAVQRLAVIESFTELGSGFNIALRDLDIRGAGNLLGAEQSGYIHELGFDL 905 Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687 Q L +++ E+ + H+ + + + ++ +L + Sbjct: 906 YQKMLEETVAELKSTEFSHMFSAEGAKAARSAKTCDLLFFF 946 >gi|90021441|ref|YP_527268.1| transcription-repair coupling protein Mfd [Saccharophagus degradans 2-40] gi|89951041|gb|ABD81056.1| transcription-repair coupling factor [Saccharophagus degradans 2-40] Length = 1153 Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 138/382 (36%), Positives = 208/382 (54%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + PF T Q+ AI + QDM M R++ GDVG GKT VA+ A AV+ Q ++ Sbjct: 603 SFPFEETVDQQQAIDAVRQDMISAQPMDRLVCGDVGFGKTEVAMRAAFIAVQNSKQVAVL 662 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHYE K + + VE+I+ + +++ G+ I+IGTH L Q Sbjct: 663 VPTTLLAQQHYENFKDRFADWPVNVEVISRFKSSKDISEIQKKLEAGKVDILIGTHKLIQ 722 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + + L L+I+DE+HRFGV+Q+ L T +L +TATPIPRTL + G D+S Sbjct: 723 GELIFPNLGLLIIDEEHRFGVRQKEALKALRTEVDILTLTATPIPRTLNMAMSGIRDLSI 782 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSV 503 I PA R +KT + + I E I R + G + Y++ ++ EK ++ + + Sbjct: 783 IATPPAKRLSVKTFVRQSDNAVIKEAILR---EIMRGGQLYYLHNEVSTIEKTAADLQEL 839 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 V + I + HG+M + + E+ M F + +L+ TT+IE GID+ A+ I Sbjct: 840 VPE---------ARIRVAHGQMRERELEAAMSDFYHKRHNILVCTTIIETGIDIPSANTI 890 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GF 618 II+ A+ FGLAQLHQLRGRVGR + LL + ++ ++ RL + +D GF Sbjct: 891 IIDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPHKKAMTADAVKRLEAIAEAQDLGAGF 950 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG +QSG Sbjct: 951 TLASHDLEIRGAGELLGDEQSG 972 >gi|126662926|ref|ZP_01733924.1| transcription-repair coupling factor [Flavobacteria bacterium BAL38] gi|126624584|gb|EAZ95274.1| transcription-repair coupling factor [Flavobacteria bacterium BAL38] Length = 1087 Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 142/465 (30%), Positives = 241/465 (51%), Gaps = 20/465 (4%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W + ++ A + +A + L +++ K G + + + +++ + + T Q + Sbjct: 479 WKTLKQKTKARIKHIAFNLIQLYAKRRLDK--GFQFSPDSYLQKELESSFIYEDTPDQIT 536 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 A D+ DM + M R++ GDVG GKT VA+ A AV+ G Q ++ P ILA QHY Sbjct: 537 ATADVKADMENERPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPTTILAYQHYR 596 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 + ++ + V + + + L+++ G+ I+IGTH L ++ + L L+I Sbjct: 597 TFSERLKDMPVTVSYVNRFRTAKQKSETLQKLQEGKVDILIGTHQLVNKNVVFKDLGLLI 656 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 +DE+ +FGV + KL AT L +TATPIPRTL + + D+S IT P R PI+ Sbjct: 657 IDEEQKFGVNVKDKLKTIATNVDTLTLTATPIPRTLQFSLMAARDLSVITTPPPNRYPIE 716 Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519 T +I N + + + + + G + ++I +IE KE +++R + + Sbjct: 717 THVIRFNE-EAIRDAISYEIQRGGQVFFINNRIENIKE--VAGMIQRLVP-----GAKVG 768 Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579 I HG+M E +M +F G +L+ATT+IE G+DV +A+ I I NA +FGL+ LHQ+ Sbjct: 769 IGHGQMEGKKLEELMLAFMEGEFDVLVATTIIESGLDVPNANTIFINNANNFGLSDLHQM 828 Query: 580 RGRVGRGEEISSCILLYHPPLS------KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633 RGRVGR + + C + PP S + T L GF IA +DL+ R G++ Sbjct: 829 RGRVGRSNKKAFCYFI-TPPYSMMTGEAQKRITALEQFSELGSGFNIAMKDLEIRGAGDL 887 Query: 634 LGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 LG +QSG F Q +++++ E+ + K + ++ D+ + Sbjct: 888 LGGEQSGFINEIGFDTYQKIMNEAIDELKENEFKDLYQEENDIET 932 >gi|121535095|ref|ZP_01666912.1| transcription-repair coupling factor [Thermosinus carboxydivorans Nor1] gi|121306345|gb|EAX47270.1| transcription-repair coupling factor [Thermosinus carboxydivorans Nor1] Length = 1109 Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 148/434 (34%), Positives = 230/434 (52%), Gaps = 29/434 (6%) Query: 219 EWT-SPARERLAYDELLAGQIALLLMRK---QFKKEIGIPINVEGKIAQKILRNIPFSPT 274 EW + +R + A +L IAL R+ F E P E + A P+ T Sbjct: 499 EWQKATSRAKAAVADLAKELIALYAARQVTPGFAFEPDTPWQKEFEEA------FPYEET 552 Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334 Q AI +I +DM M R+L GDVG GKT VA+ A AV +G Q ++ P +LA Sbjct: 553 PDQLQAISEIKRDMEAPRPMDRLLCGDVGFGKTEVAIRAAFKAVMSGKQVAVLVPTTVLA 612 Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394 QQHY+ +V++I+ ++ L ++ GQ ++IGTH L +Q+ Sbjct: 613 QQHYQTFSSRFAGFGPVVDVISRFRSPKEQKATLAKVRAGQVDVLIGTHRLLNPDVQFKD 672 Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454 L L+IVDE+ RFGV Q+ KL + T VL ++ATPIPRTL ++ +G D+S I P Sbjct: 673 LGLLIVDEEQRFGVAQKEKLKKWRTNIDVLTLSATPIPRTLHMSLVGARDMSIIETPPEE 732 Query: 455 RKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLH 511 R P++T ++ + +EV+ + ++ L G + Y++ +++ +K S ++ Sbjct: 733 RYPVQTYVVEYH--EEVVRDAIRRELRRGGQVYFVYNRVQTIDKMHSRLSEILP------ 784 Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 + I + HG+MS+ E VM F G +L+ T++IE G+DV +A+ II+ +A+ F Sbjct: 785 ---DARIGVAHGQMSEDRLERVMLDFYEGNYDILVCTSIIESGLDVPNANTIIVYDADKF 841 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLK 626 GLAQL+Q+RGRVGR ++ Y L++ + RL +K + GF IA DL+ Sbjct: 842 GLAQLYQMRGRVGRTHRMAYAYFTYQRDKVLTEVAEKRLQAIKEFAELGAGFKIAMRDLE 901 Query: 627 QRKEGEILGIKQSG 640 R G ILG +Q G Sbjct: 902 IRGAGNILGPQQHG 915 >gi|332971077|gb|EGK10047.1| transcription-repair coupling factor [Desmospora sp. 8437] Length = 1181 Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 133/378 (35%), Positives = 215/378 (56%), Gaps = 17/378 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +I++I +DM + M R+L GDVG GKT VA+ A A G Q ++ P Sbjct: 621 PYEETADQLRSIEEIKKDMEKTQPMDRLLCGDVGYGKTEVAIRAAFKATMDGKQVAVLVP 680 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQH+E ++ + + + +++ + +R+ ++ + G I+IGTH + Sbjct: 681 TTILAQQHFETFRERFSDFPVEIRVLSRFRSRKEQRETIQGVNDGTVDIVIGTHRILSKD 740 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +Q+ L L+IVDE+ RFGV+ + K+ + + VL +TATPIPRTL ++ +G D+S I Sbjct: 741 VQFKDLGLLIVDEEQRFGVKHKEKIKKIKSNIDVLTLTATPIPRTLHMSMMGVRDLSVIE 800 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R P++T ++ + + E IER ++ G + Y++ Q++ N + E+ Sbjct: 801 TPPENRFPVQTYVLEYSAALVREAIER---EMARGGQVYFLYNQVQ-----NIDKMAEQI 852 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 L + IA+ HG+M++ + E VM F +G +L++TT+IE G+D+ + + +II N Sbjct: 853 RMLVPD--ARIAVAHGQMAETELEKVMLDFLDGETDVLVSTTIIETGVDIPNVNTLIIYN 910 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAE 622 A+ GL+QL+QLRGRVGR I+ Y + LS+ + RL +K TE GF IA Sbjct: 911 ADRMGLSQLYQLRGRVGRSNRIAYAYFTYQRNKVLSETAEKRLQAIKEFTELGSGFKIAM 970 Query: 623 EDLKQRKEGEILGIKQSG 640 DL R G +LG +Q G Sbjct: 971 RDLAIRGAGNLLGAEQHG 988 >gi|15639335|ref|NP_218784.1| transcription-repair coupling factor (trcF) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025577|ref|YP_001933349.1| transcription-repair coupling factor [Treponema pallidum subsp. pallidum SS14] gi|3322623|gb|AAC65332.1| transcription-repair coupling factor (trcF) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018152|gb|ACD70770.1| transcription-repair coupling factor [Treponema pallidum subsp. pallidum SS14] Length = 1140 Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 136/376 (36%), Positives = 214/376 (56%), Gaps = 13/376 (3%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q I+++ QDM + M R++ GDVG GKT +A+ A AV G Q V + P Sbjct: 597 PYEETDDQRICIEEVKQDMQEAVPMDRLVCGDVGYGKTEIAMRAAFKAVMGGKQVVFLTP 656 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +L +QH+ I ++ + +E ++ +P++ ++ L ++AHG +I+GTH L Q Sbjct: 657 TTLLVEQHFRTICNRFKHFPVRIEKLSRFVPKSEQKDILAKLAHGDIDLIVGTHRLIQKD 716 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGVQ + KL Q T L ++ATPIPRTL + L D+S +T Sbjct: 717 VSFKDLGLMILDEEQRFGVQDKEKLKQMKTNVDCLSLSATPIPRTLHMGMLKIRDMSLLT 776 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P GR PI+TVI + + V ++ L + +++ +IE N SV Sbjct: 777 TPPEGRLPIETVIQQFDP-NLVATAIRKELDREGQIFYLHNRIE-----NLESVKCMLQK 830 Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 L SI + H M + E + + F T +LL++TT+IE GIDV +A+ III+ A+ Sbjct: 831 LVPEL--SICVAHSLMGSEELEDIFERFYQKTFQLLLSTTIIENGIDVPNANTIIIDRAD 888 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEED 624 +G++QL+QLRGRVGR ++ + LLY+ LS + RL V+ + D GF +A +D Sbjct: 889 MYGVSQLYQLRGRVGRSDKKAYAYLLYYHDVALSDLAIKRLQVISDFTDLGAGFKVALKD 948 Query: 625 LKQRKEGEILGIKQSG 640 ++ R G +LG +QSG Sbjct: 949 MEIRGVGNLLGKEQSG 964 >gi|152973901|ref|YP_001373418.1| transcription-repair coupling factor [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022653|gb|ABS20423.1| transcription-repair coupling factor [Bacillus cytotoxicus NVH 391-98] Length = 1176 Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 137/382 (35%), Positives = 213/382 (55%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T+ Q +I++I +DM + M R+L GDVG GKT VA+ A A+ Q I+ Sbjct: 619 SFPYQETEDQLRSIEEIKKDMERSRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAIL 678 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGTH + Sbjct: 679 VPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKEQNETIKGLKDGTVDIVIGTHRILS 738 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG D+S Sbjct: 739 KDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANIDVLTLTATPIPRTLHMSMLGVRDLSV 798 Query: 448 ITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSV 503 I P R P++T ++ N I E IER L+ G + Y++ ++E E+K + Sbjct: 799 IETPPENRFPVQTYVVEYNPALIREAIER---ELARGGQIYFLYNRVEDIERKADEISML 855 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ + + + Sbjct: 856 VPE---------ARVTYAHGKMNESELESVMLSFLEGQYDVLVSTTIIETGVDIPNVNTL 906 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGF 618 I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE GF Sbjct: 907 IVYDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGF 966 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 IA DL R G +LG +Q G Sbjct: 967 KIAMRDLSIRGAGNLLGAEQHG 988 >gi|172040264|ref|YP_001799978.1| transcription-repair coupling factor [Corynebacterium urealyticum DSM 7109] gi|171851568|emb|CAQ04544.1| transcription-repair coupling factor [Corynebacterium urealyticum DSM 7109] Length = 1249 Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 137/429 (31%), Positives = 228/429 (53%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W + R+ +AG++ L ++Q G + +++ PF+ T+ Q Sbjct: 631 DWKNTKRKARKAVREIAGELVQLYAQRQAAP--GYAFAPDSPWQREMEEAFPFTETEDQF 688 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI+ + DM + M R++ GDVG GKT VA+ A AV++G Q ++ P +LAQQH Sbjct: 689 NAIEAVKSDMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQSGKQVAVLVPTTLLAQQHM 748 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + Q+ + ++ A ++ L+ +A G I++GTH L Q + + L L+ Sbjct: 749 KTFRDRMQDFPTRIAELSRFTTPAQSKEILKGLAEGTIDIVVGTHRLLQTGVTWKNLGLI 808 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + + T VL M+ATPIPRTL ++ G ++S I P R P+ Sbjct: 809 IVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPQDRHPV 868 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516 T + V ++ L + ++I +++ EK + RS+V + Sbjct: 869 LT-YVGAQEDKHVAAAIRRELLRDGQVFYIHNRVKSIEKAAEHIRSLVPE---------A 918 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 + + HG+MS+ E+ ++ F N +L+ TT++E G+D+ +A+ +I+ENA H GL+QL Sbjct: 919 RVVVAHGQMSEEQLETTVEGFWNREFDILVCTTIVETGLDISNANTLIVENAHHMGLSQL 978 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 HQLRGRVGR E + LY L++ SY RLS + + G +A +DL+ R G Sbjct: 979 HQLRGRVGRSRERAYAYFLYPKGEVLTETSYDRLSTIAQNNELGAGMAVAMKDLEMRGAG 1038 Query: 632 EILGIKQSG 640 +LG +QSG Sbjct: 1039 NVLGAEQSG 1047 >gi|33865711|ref|NP_897270.1| transcriptional-repair coupling factor [Synechococcus sp. WH 8102] gi|33632881|emb|CAE07692.1| Transcriptional-repair coupling factor [Synechococcus sp. WH 8102] Length = 1192 Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 138/422 (32%), Positives = 227/422 (53%), Gaps = 22/422 (5%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G +G ++ + P+ PT Q A D+ +DM + M R++ GDVG GKT VA+ Sbjct: 601 GFAFPSDGPWQNELEESFPYEPTPDQLKATADVKRDMEKAEPMDRLVCGDVGFGKTEVAI 660 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A+ A+ AG Q ++AP +LAQQH+ + + I V ++ + R+ LE + Sbjct: 661 RAIFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYPIKVALLNRFRTASERKTILEGL 720 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 G ++GTH L + +L L++VDE+ RFGV Q+ K+ VL ++ATPI Sbjct: 721 KGGTIDAVVGTHQLLGKGASFQQLGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPI 780 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491 PRTL ++ G ++S IT P R+PIKT + ++ + V ++ L G + +++ P+ Sbjct: 781 PRTLYMSLSGVREMSLITTPPPLRRPIKTHLAALD-PEAVRSAIRQELDRGGQVFYVVPR 839 Query: 492 IE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549 +E E + R ++ L + HG+M++ + ES M +F G +++ TT Sbjct: 840 VEGIEDVAAGLREMLPGLKLL---------VAHGQMAEGELESAMVAFNAGEADVMLCTT 890 Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYT 606 ++E G+D+ + I+IE+A FGLAQL+QLRGRVGR I + L++P LS N+ Sbjct: 891 IVESGLDIPRVNTILIEDAHRFGLAQLYQLRGRVGR-SGIQAHAWLFYPGNGSLSDNARQ 949 Query: 607 RLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIAR 660 RL ++ G+ +A D++ R G +LG++QSG + F + L +SL EI Sbjct: 950 RLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQG 1009 Query: 661 KD 662 +D Sbjct: 1010 QD 1011 >gi|116626459|ref|YP_828615.1| transcription-repair coupling factor [Candidatus Solibacter usitatus Ellin6076] gi|116229621|gb|ABJ88330.1| transcription-repair coupling factor [Candidatus Solibacter usitatus Ellin6076] Length = 1141 Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 144/377 (38%), Positives = 209/377 (55%), Gaps = 17/377 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 FSPT+ Q +AI +I +DM M R+L GDVG GKT V + A A+ G Q V++AP Sbjct: 600 FSPTRDQLTAISEIKRDMESTQPMDRLLCGDVGYGKTEVVMRAAFKALGDGKQVVVLAPT 659 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA QH+E K+ Q + VE+ + + L +A G+ I IGTH L + Sbjct: 660 TVLAFQHFETFKRRFQPFPVRVEMFSRFRSPKEIKAGLVDLAEGKIDIAIGTHRLLSQDV 719 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 L LV+VDE+ RFGV+ + +L Q A V+ M+ATPIPRTL ++ LG D+S I Sbjct: 720 VMRDLGLVLVDEEQRFGVKHKERLKQMKRAVDVISMSATPIPRTLHMSLLGLRDMSVIET 779 Query: 451 KPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P R I TV+ P E+I + L++ L G + Y++ +++ S+ R S Sbjct: 780 PPKDRLAIHTVVAPYQ--PELIRQALELELGRGGQVYFLHNRVD--------SIWMRAAS 829 Query: 510 LHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 L E + I + HG+M + + E M F +L+ TT+IE G+D+ A+ +IIENA Sbjct: 830 LQELVPGARIGVGHGQMGEAELEKTMLQFMRHEFDILVCTTIIENGLDIPLANTMIIENA 889 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEE 623 E +GL++L+QLRGRVGR + LL P L++ + RL+ LK D GF IA Sbjct: 890 ERYGLSELYQLRGRVGRSNRRAYAYLLVPPDTELTEIARKRLAALKEFSDLGAGFKIAAL 949 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R G +LG +Q G Sbjct: 950 DLELRGAGNLLGGEQHG 966 >gi|78485512|ref|YP_391437.1| transcription-repair coupling factor [Thiomicrospira crunogena XCL-2] gi|78363798|gb|ABB41763.1| transcription-repair coupling factor [Thiomicrospira crunogena XCL-2] Length = 1159 Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 139/407 (34%), Positives = 218/407 (53%), Gaps = 15/407 (3%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q + G + + + PF T QE+AI+ +L DM M R++ Sbjct: 581 LLDIYAQREARPGYAFQTDEEAYARFRAGFPFEETPDQEAAIEAVLSDMKSDKPMDRLIC 640 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A A +G Q ++ P +L+QQH E K + I +E ++ Sbjct: 641 GDVGFGKTEVAMRAAFVAAYSGKQVAVLVPTTLLSQQHLENFKNRFADWPIRIEGLSRFQ 700 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 ++ +E + + Q IIIGTH + Q+ +Q+ L L+I+DE+HRFGV+Q+ +L + T Sbjct: 701 SAKETKQIVEAVKNNQVDIIIGTHKIIQNDMQFGNLGLIIIDEEHRFGVRQKEQLKKLRT 760 Query: 420 APHVLLMTATPIPRTLVLTSLGDI-DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 V+ MTATPIPRTL + ++ D+ D+S I PA R ++T + N D V E Sbjct: 761 EVDVMTMTATPIPRTLNM-AMNDLRDLSIIATAPAKRLAVQTFVQDWNP-DVVKEACLRE 818 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 + G + Y + +++ + E +L + + HG+M + + E VM +F Sbjct: 819 IRRGGQIYLLFNNVDK-----IEQMAEEIQALLPE--AKVETAHGQMHERELEQVMQNFY 871 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 + +L+ TT+IE GID+ A+ I+I A+ FGLAQLHQLRGRVGR + L Sbjct: 872 HRRFNILVCTTIIETGIDIPTANTILIHRADKFGLAQLHQLRGRVGRSHHKAYAYLFTAG 931 Query: 599 P--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 ++K++ RL+ + + GF++A DL+ R GE+LG QSG Sbjct: 932 KALMTKDAEKRLTAIAKHDTLGAGFMLASHDLEIRGAGELLGDGQSG 978 >gi|25027590|ref|NP_737644.1| putative transcription-repair coupling factor [Corynebacterium efficiens YS-314] gi|23492872|dbj|BAC17844.1| putative transcription-repair coupling factor [Corynebacterium efficiens YS-314] Length = 1218 Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 136/429 (31%), Positives = 224/429 (52%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W + ++ A +AG++ L ++Q G + +++ N P+ T+ Q Sbjct: 588 DWKNTKKKARAAVREIAGELVELYAKRQAAP--GHAFGPDTPWQKEMEDNFPYVETEDQM 645 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 AI + +DM + M R++ GDVG GKT VA+ A AV+ G Q ++ P +LAQQH Sbjct: 646 LAIDAVKEDMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHK 705 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 ++ + + ++ A ++ L +A G+ I++GTH L Q +Q+ L LV Sbjct: 706 STFEERMAGFPVTIHGLSRFTSTAESKETLAGLASGEVDIVVGTHRLLQTGVQWKNLGLV 765 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + + + VL M+ATPIPRTL ++ G +++ + P R PI Sbjct: 766 IVDEEQRFGVEHKEHIKALRSHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHPI 825 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516 T + P +V ++ L + ++I ++ EKK R +V + Sbjct: 826 LTYVGPYED-KQVAASIRRELLRDGQVFFIHNKVADIEKKARELRDLVPE---------A 875 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 + + HG+MS+ E + F + +L+ TT++E G+D+ +A+ +I+ENA H GL+QL Sbjct: 876 RVVVAHGQMSEELLEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQL 935 Query: 577 HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 HQLRGRVGR E LY L++ SY RL+ + D G +A +DL+ R G Sbjct: 936 HQLRGRVGRSRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAG 995 Query: 632 EILGIKQSG 640 +LG +QSG Sbjct: 996 NVLGAEQSG 1004 >gi|167036600|ref|YP_001664178.1| transcription-repair coupling factor [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115027|ref|YP_004185186.1| transcription-repair coupling factor [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855434|gb|ABY93842.1| transcription-repair coupling factor [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928118|gb|ADV78803.1| transcription-repair coupling factor [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 1165 Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 154/462 (33%), Positives = 240/462 (51%), Gaps = 36/462 (7%) Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFK 248 DL+QK P+ NP K EW R+ E LA + L ++Q Sbjct: 551 DLVQKYVGPT--------DNPPKLNKLGGSEWLRAKRKAKKAVEDLAKDLIQLYAKRQMV 602 Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 K G + + ++ P+ T+ Q IK+I +DM + M R+L GDVG GKT Sbjct: 603 K--GHAFSPDTPWQKEFEEQFPYEETEDQLRCIKEIKEDMEKDRPMDRLLCGDVGYGKTE 660 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHY-EFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 VAL A AV G Q + P ILA QHY FI+++ + + +E+++ + K Sbjct: 661 VALRAAFKAVADGKQVAFLCPTTILAYQHYANFIERFKE-FPVKIEMLSRFRTPKEQSKI 719 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 ++ +A G II+GTH L Q+ I++ L L+I+DE+ RFGV + K+ + VL ++ Sbjct: 720 IKELAEGNIDIIVGTHRLLQNDIKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLS 779 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKA 485 ATPIPRTL ++ +G D+S + P R P++T ++ N I + I R ++ G + Sbjct: 780 ATPIPRTLHMSLIGIRDMSVLENPPEDRFPVETYVVEFNEELIKDAILR---EIARGGQV 836 Query: 486 YWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y++ ++ EK S + +V +A+ HG+M + E VM F NG Sbjct: 837 YFVYNRVNGIEKMASFVKDLVP---------GCRVAVAHGQMEESQLEKVMIDFLNGEYD 887 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LS 601 +L++TT+IE G+D+ + + II+ +A+ GL+QL+QLRGRVGR ++ Y LS Sbjct: 888 VLVSTTIIETGLDIPNVNTIIVYDADKLGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLS 947 Query: 602 KNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640 + + RL +K TE GF IA DL+ R G +LG +Q G Sbjct: 948 EVAEKRLEAIKEFTEFGSGFKIAMRDLEIRGAGNLLGAEQHG 989 >gi|225375822|ref|ZP_03753043.1| hypothetical protein ROSEINA2194_01454 [Roseburia inulinivorans DSM 16841] gi|225212257|gb|EEG94611.1| hypothetical protein ROSEINA2194_01454 [Roseburia inulinivorans DSM 16841] Length = 1183 Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 139/408 (34%), Positives = 228/408 (55%), Gaps = 19/408 (4%) Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 Q+ AI+ +DM M R++ GDVG GKT +A+ A AV+ G Q + P ILAQ Sbjct: 630 DQDLAIEATKKDMESTKIMDRLICGDVGYGKTEIAIRAAFKAVQDGKQVAFLVPTTILAQ 689 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 QHY + ++ + ++++ ++K LE++ GQ IIIGTH L + + L Sbjct: 690 QHYNNFVQRMKDFPVNIDLLCRFRSAGEQKKTLEKLKKGQVDIIIGTHRLLSKDVVFKDL 749 Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 L+++DE+ RFGV + K+ Q VL +TATPIPRTL ++ +G D+S + E P R Sbjct: 750 GLLMIDEEQRFGVTHKEKIKQLKNNIDVLTLTATPIPRTLHMSLIGIRDMSVLEEPPMDR 809 Query: 456 KPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 PI+T ++ N + E I R L+ G +AY++ +++E V + L Sbjct: 810 IPIQTYVMEYNEELVREAISR---ELARGGQAYYVYNRVKE-----IADVAAKIAELVPE 861 Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 +++A HG+M + + E++M F NG +L++TT+IE G+D+ + + +II +A++ GL Sbjct: 862 --ANVAYAHGQMKETELENIMYKFINGEIDVLVSTTIIETGLDISNVNTMIIHDADNMGL 919 Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQR 628 +QL+QLRGRVGR + L+Y L + + RL+ +K TE GF IA DL+ R Sbjct: 920 SQLYQLRGRVGRSNRTAYAFLMYKRDKMLKEVAEKRLAAIKEYTELGSGFKIAMRDLEIR 979 Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676 G +LG +Q G + + +L+ +L A K+AK + ++ T++ Sbjct: 980 GAGNLLGAEQHGHMEAV--GYDLYCKMLNEAVKEAKGMKQEESFDTTI 1025 >gi|227888873|ref|ZP_04006678.1| transcription-repair coupling factor [Lactobacillus johnsonii ATCC 33200] gi|227850566|gb|EEJ60652.1| transcription-repair coupling factor [Lactobacillus johnsonii ATCC 33200] Length = 1165 Score = 216 bits (551), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 138/431 (32%), Positives = 232/431 (53%), Gaps = 21/431 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT + + E +A + L +++ +K G + + + ++ P+ T Q Sbjct: 563 EWTKTKKRVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKEFEDAFPYPETPDQL 620 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I++I DM M R+L GDVG GKT VAL A A+ G Q +AP ILAQQH+ Sbjct: 621 RSIREIKADMESPKPMDRLLVGDVGFGKTEVALRAAFKAIRDGKQVAFLAPTTILAQQHF 680 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E ++ ++ + +++ ++ +E + G+ +++GTH L +Q+ L L+ Sbjct: 681 ETMQDRFKDFPVNCALLSRFQTPTEVKEIVEGVKSGKIDMVVGTHRLLSKDVQFKDLGLL 740 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L + VL +TATPIPRTL ++ +G D+S + P R PI Sbjct: 741 IIDEEQRFGVKHKERLKELKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPTNRYPI 800 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 +T + + + ++ + VL E K+ +++ +I+ + VV + L Sbjct: 801 QTYV--MEEMPSIVR--EAVLREMKRNGQVFFLHNRID-----DIDKVVSQLEELIPE-- 849 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + I IHGRMS+ E +M F +L+ TT+IE G+D+ + + +I+E+A+H+GL+Q Sbjct: 850 AKIEYIHGRMSENQMEDIMYRFSKNEFDILVTTTIIETGVDMPNVNTMIVEDADHYGLSQ 909 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGR+GR ++ LY P L++ RLS +++ TE GF IA DL R Sbjct: 910 LYQLRGRIGRSARLAYAYFLYQPNKVLTEIGEKRLSAIRDFTELGSGFKIAMRDLSIRGA 969 Query: 631 GEILGIKQSGM 641 G +LG +Q G Sbjct: 970 GNMLGKQQHGF 980 >gi|312876096|ref|ZP_07736084.1| DEAD/DEAH box helicase domain protein [Caldicellulosiruptor lactoaceticus 6A] gi|311797082|gb|EFR13423.1| DEAD/DEAH box helicase domain protein [Caldicellulosiruptor lactoaceticus 6A] Length = 643 Score = 216 bits (551), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 140/429 (32%), Positives = 234/429 (54%), Gaps = 18/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW ++ E++A + L ++Q K G + + ++ P++ T+ Q Sbjct: 56 EWQKQKQKVRKSLEIVAKDLVELYAKRQLHK--GFKFSKDTLWQKEFEEKFPYTETEGQL 113 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 AI++I +DM + M RIL GDVG GKT VA+ A AV Q ++ P ILAQQHY Sbjct: 114 QAIEEIKRDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVLVPTTILAQQHY 173 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 ++ + +E+++ + ++K ++ + G I+IGTH L +++ L L+ Sbjct: 174 MTFSARMKDFPVTIEVLSRLKNETQQKKIIKGLKEGTIDIVIGTHRLLSSDVKFKDLGLL 233 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+H+FGV+ + K+ + T VL +TATPIPRTL + LG D+S I + P R P+ Sbjct: 234 IIDEEHKFGVEAKEKIKKLKTNVDVLTLTATPIPRTLNMALLGIRDLSVIEDPPEDRYPV 293 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T ++ N I E I R +S G + +++ +I++ +E V + +L + Sbjct: 294 QTFVLEYNERIIKEAILR---EISRGGQVFYLYNRIKDIQE-----VAAKLQNLVGD-SI 344 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 +A HG+M + + E V+ F G +L+ TT+IE G+D+ + + +I+++++ GLAQL Sbjct: 345 KVACAHGQMPEEELERVLLDFIEGRYDVLVCTTIIESGVDMPNVNTLIVKDSDRLGLAQL 404 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGRVGR ++ + LS+ + RL+ +K TE GF IA DL+ R G Sbjct: 405 YQLRGRVGRSNRLAYAYFTFRKDKVLSEQAQKRLAAIKEFTELGSGFKIAMRDLEIRGAG 464 Query: 632 EILGIKQSG 640 +LG Q G Sbjct: 465 SVLGKLQHG 473 >gi|325288390|ref|YP_004264571.1| transcription-repair coupling factor [Syntrophobotulus glycolicus DSM 8271] gi|324963791|gb|ADY54570.1| transcription-repair coupling factor [Syntrophobotulus glycolicus DSM 8271] Length = 1182 Score = 216 bits (551), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 142/428 (33%), Positives = 229/428 (53%), Gaps = 17/428 (3%) Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EW + +R R A E+ I L R+ K G + + ++ P+ T Q Sbjct: 574 EWNKAKSRVRSAVKEMAIDLIELYAKRESSK---GYVFSADNHWQKEFEDKFPYEETADQ 630 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 +I++I +DM + M R+L GDVG GKT VA+ A AV G Q I+ P ILAQQH Sbjct: 631 LQSIQEIKKDMMKSKVMDRLLCGDVGYGKTEVAMRAAFKAVADGKQVAILVPTTILAQQH 690 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y ++ + + +E+I+ +++ + + G IIIGTH L + I + L L Sbjct: 691 YTTFQERFMDYPVKIEMISRFRTAKEQKQIIRGLKDGTIDIIIGTHKLVSEGIDFKDLGL 750 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 ++VDE+ RFGV + K+ T VL ++ATPIPRTL ++ +G D+S I+ P R P Sbjct: 751 LVVDEEQRFGVTHKEKIKALKTNVDVLTLSATPIPRTLQMSLVGLRDMSVISTPPDDRYP 810 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517 ++T + N D V + ++ + G + +++ +IE + V+ SL + Sbjct: 811 VQTFVAEFNP-DMVRDAVRREIHRGGQVFYVHNRIE-----SLDRVLRMLKSLVPE--AK 862 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 ++HG+M++ E+ M SF +LI TT+IE G+D+ + + +I++ A+ FGL+QL+ Sbjct: 863 CGVVHGQMNETQLENEMISFLEKEKDILICTTIIETGLDMANVNTLIVDEADRFGLSQLY 922 Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGE 632 QLRGRVGR + LY P L++ + RLS ++ TE GF +A DL+ R G Sbjct: 923 QLRGRVGRSNRKAYAYFLYQPSKILTEEAEKRLSTIREFTEFGSGFKVAMRDLEIRGAGS 982 Query: 633 ILGIKQSG 640 ++G +Q G Sbjct: 983 LIGGEQHG 990 >gi|209964568|ref|YP_002297483.1| transcription-repair coupling factor [Rhodospirillum centenum SW] gi|209958034|gb|ACI98670.1| transcription-repair coupling factor [Rhodospirillum centenum SW] Length = 1209 Score = 216 bits (551), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 145/436 (33%), Positives = 228/436 (52%), Gaps = 25/436 (5%) Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 ALL + + P+ V + P++ T Q AI+D+L D+S M R++ Sbjct: 586 ALLRIAAERALRTAPPVAVPDGAWDEFCARFPYAETDDQLHAIEDVLGDLSSGRPMDRLV 645 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358 GDVG GKT VAL A AV G Q ++ P +LA+QHY ++ + + ++ Sbjct: 646 CGDVGFGKTEVALRAAFLAVMNGMQVAVVVPTTLLARQHYRTFEQRFAGLPVRLGQLSRL 705 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + +A G I++GTHAL S+ + +L +VIVDE+ FGV+Q+ +L + Sbjct: 706 ATAKETAQTKAGLADGTVDIVVGTHALLSKSVDFKRLGMVIVDEEQHFGVKQKERLKELR 765 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 HVL +TATPIPRTL L G ++S I P R ++T ++P D V+ R + + Sbjct: 766 ADIHVLTLTATPIPRTLQLALSGVRELSLIATPPVDRLAVRTFVLP---YDPVVIR-EAI 821 Query: 479 LSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII--HGRMSDIDKESV 533 L E G +++++CP+IE+ +ER E + ++ HG+M E V Sbjct: 822 LREHYRGGQSFYVCPRIED---------LERVRLQLEELVPEVKVVVAHGQMPASQLEEV 872 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M +F +L+AT +IE G+D+ A+ +++ A+ FGLAQL+Q+RGRVGR + Sbjct: 873 MTAFDEHKYDVLLATNIIESGLDIPSANTLVVHRADLFGLAQLYQVRGRVGRAKVRGYAY 932 Query: 594 LLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648 L Y P LS + RL V++ + GF +A D+ R G +LG +QSG + + Sbjct: 933 LTYQPRTVLSATAQQRLHVIETLDSLGAGFQLASHDMDIRGAGNLLGEEQSGHIREVGV- 991 Query: 649 PELHDSLLEIARKDAK 664 EL+ +LE A DA+ Sbjct: 992 -ELYQQMLEEAVADAR 1006 >gi|116074923|ref|ZP_01472184.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9916] gi|116068145|gb|EAU73898.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9916] Length = 1194 Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 137/421 (32%), Positives = 226/421 (53%), Gaps = 20/421 (4%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G ++G ++ + P+ PT Q A ++ +DM + M R++ GDVG GKT VA+ Sbjct: 603 GFAFPIDGPWQTELEDSFPYEPTPDQLKATAEVKRDMEKSQPMDRLVCGDVGFGKTEVAI 662 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A+ A+ AG Q ++AP +LAQQH+ + + I V ++ R+ LE + Sbjct: 663 RAIFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYPIKVALLNRFRTAGERKTILEGL 722 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 G ++GTH L S + KL L++VDE+ RFGV Q+ K+ VL ++ATPI Sbjct: 723 KKGTIDAVVGTHQLLSKSTAFDKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPI 782 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491 PRTL ++ G ++S IT P R+PIKT + ++ + V ++ L G + +++ P+ Sbjct: 783 PRTLYMSLSGVREMSLITTPPPLRRPIKTHLAALDE-EAVRSAIRQELDRGGQVFYVVPR 841 Query: 492 IEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550 ++ + E L E + + HG+M++ + ES M +F G +++ TT+ Sbjct: 842 VQ--------GIEEVAGKLREMLPGLKLLVAHGQMAEGELESAMVAFNGGEADVMLCTTI 893 Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTR 607 +E G+D+ + I+IE+A FGLAQL+QLRGRVGR I + L++P LS + R Sbjct: 894 VESGLDIPRVNTILIEDAHRFGLAQLYQLRGRVGR-SGIQAHAWLFYPGDASLSDAARQR 952 Query: 608 LSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARK 661 L ++ G+ +A D++ R G +LG++QSG + F + L +SL EI + Sbjct: 953 LRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQGQ 1012 Query: 662 D 662 D Sbjct: 1013 D 1013 >gi|296329557|ref|ZP_06872043.1| transcription-repair coupling factor [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672754|ref|YP_003864425.1| transcription-repair coupling factor [Bacillus subtilis subsp. spizizenii str. W23] gi|296153300|gb|EFG94163.1| transcription-repair coupling factor [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305410997|gb|ADM36115.1| transcription-repair coupling factor [Bacillus subtilis subsp. spizizenii str. W23] Length = 1177 Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 135/380 (35%), Positives = 213/380 (56%), Gaps = 21/380 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q +I +I +DM ++ M R+L GDVG GKT VA+ A A+ G Q ++ P Sbjct: 621 PYQETEDQLRSIHEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIGDGKQVALLVP 680 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHYE I + Q+ I + +++ + + ++ + +G I+IGTH L Sbjct: 681 TTILAQQHYETITERFQDYPINIGLLSRFRTRKEANETIKGLKNGTVDIVIGTHRLLSKD 740 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG D+S I Sbjct: 741 VVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGVRDLSVIE 800 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 P R P++T ++ N + E IER L+ G + Y++ ++E E+K +V Sbjct: 801 TPPENRFPVQTYVVEYNGALVREAIER---ELARGGQVYFLYNRVEDIERKADEISMLVP 857 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + +A HG+M++ + E+VM +F G +L++TT+IE G+D+ + + +I+ Sbjct: 858 ---------DAKVAYAHGKMTENELETVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIV 908 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620 +A+ GL+QL+QLRGRVGR ++ Y L++ + RL +K TE GF I Sbjct: 909 FDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKI 968 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL R G +LG +Q G Sbjct: 969 AMRDLTIRGAGNLLGAQQHG 988 >gi|148242564|ref|YP_001227721.1| transcription-repair coupling factor [Synechococcus sp. RCC307] gi|147850874|emb|CAK28368.1| Transcription-repair coupling factor [Synechococcus sp. RCC307] Length = 1183 Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 137/422 (32%), Positives = 230/422 (54%), Gaps = 22/422 (5%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G V+G ++ + P+ PT Q AI ++ +DM Q M R++ GDVG GKT VAL Sbjct: 592 GFAFPVDGPWQNELEDSFPYEPTPDQLKAITEVKRDMEQGKPMDRLVCGDVGFGKTEVAL 651 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A+ AV AG Q ++AP +LAQQH+ + + I V ++ + R++ L+ + Sbjct: 652 RAIFKAVTAGRQTALLAPTTVLAQQHWRTLSERFAPYPIKVALLNRFRTASERKEILKGL 711 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 + G +++GTH L + +L L++VDE+ RFGV Q+ K+ VL ++ATPI Sbjct: 712 SDGAIDVVVGTHQLLGKGTSFKQLGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPI 771 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491 PRTL ++ G ++S IT P R+PIKT + ++ + V ++ L G + +++ P+ Sbjct: 772 PRTLYMSLSGVREMSLITTPPPLRRPIKTHLASLDE-EAVRSAIRQELDRGGQVFYVVPR 830 Query: 492 IE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549 +E E+ R ++ L + HG+M + + ES M +F G +++ TT Sbjct: 831 VEGIEEVAGGLRQMLPGLRLL---------VAHGQMPEGELESAMVAFNAGEADVMLCTT 881 Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYT 606 ++E G+D+ + I+IE+++ FGL+QL+QLRGRVGR I + L++P LS + Sbjct: 882 IVESGLDIPRVNTILIEDSQKFGLSQLYQLRGRVGR-SGIQAHAWLFYPGDASLSDAARQ 940 Query: 607 RLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIAR 660 RL ++ G+ +A D++ R G +LG++QSG + F + L + L EI Sbjct: 941 RLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQEELAEIRG 1000 Query: 661 KD 662 +D Sbjct: 1001 QD 1002 >gi|291561352|emb|CBL40151.1| transcription-repair coupling factor [butyrate-producing bacterium SS3/4] Length = 1201 Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 147/429 (34%), Positives = 231/429 (53%), Gaps = 19/429 (4%) Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EWT + + R A E+ + L R+ + P V K +++ P+ T Q Sbjct: 599 EWTKTKTKVRTAVREIAKELVELYAARQDAEGFQYGPDTVWQKEFEEMF---PYDETDDQ 655 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 +AI D +DM K M R++ GDVG GKT +AL A AV+ Q V + P ILAQQ Sbjct: 656 LTAIDDTKRDMESKKIMDRLICGDVGYGKTEIALRAAFKAVQEEKQVVYLVPTTILAQQI 715 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y + ++ + V++++ +K +E + G II+GTH + +Q+ L L Sbjct: 716 YNTFVQRMKDFPVRVDMMSRFRTPGEMKKTVEGLKKGYVDIIVGTHRVLSKDVQFKNLGL 775 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +IVDE+ RFGV + K+ Q VL +TATPIPRTL ++ +G D+S + E P R P Sbjct: 776 LIVDEEQRFGVTHKEKIKQMKQNVDVLTLTATPIPRTLHMSLIGIRDMSVLEEPPVDRVP 835 Query: 458 IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 I+T ++ N DE+I E + L G + Y++ ++ +N V SL + Sbjct: 836 IQTYVMEYN--DEMIREAIHRELGRGGQVYYVYNRV-----NNIDEVANHVASLVPD--A 886 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 ++A HG+M++ E +M F NG +L++TT+IE G+D+ +A+ +II++A+ GL+QL Sbjct: 887 NVAFAHGQMNEHQLEKIMLDFINGEIDVLVSTTIIETGLDIPNANTMIIQDADRLGLSQL 946 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +Q+RGR+GR S L+Y L +++ RL ++ TE G IA DL+ R G Sbjct: 947 YQIRGRIGRSNRTSFAFLMYKRDKMLKEDAEKRLQAIREFTELGSGIKIAMRDLEIRGAG 1006 Query: 632 EILGIKQSG 640 ILG +Q G Sbjct: 1007 NILGAEQHG 1015 >gi|307718846|ref|YP_003874378.1| transcription-repair coupling factor [Spirochaeta thermophila DSM 6192] gi|306532571|gb|ADN02105.1| transcription-repair coupling factor [Spirochaeta thermophila DSM 6192] Length = 1127 Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 135/415 (32%), Positives = 234/415 (56%), Gaps = 17/415 (4%) Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 E LA ++ + R++ P + E ++ + PF T+ Q I+++ +DM Sbjct: 549 EDLAKRLLAIYSRRKLAHGFAFPPDTEWQM--EFEARFPFEETEDQLRCIEEVKRDMESP 606 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351 M R++ GDVG GKT +AL A AV AG Q I+AP IL +QHYE ++ + + Sbjct: 607 RPMDRLVCGDVGFGKTEIALRAAFKAVTAGKQVAILAPTTILVEQHYETFQERLEGFPVR 666 Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411 +++ +P +R+ L+ + G+ I+IGTH + Q + + L L+++DE+ RFGV+ + Sbjct: 667 AAMLSRFVPVPEQREILKDLREGKVDILIGTHRILQKDVVFKDLGLLVIDEEQRFGVKDK 726 Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471 +L + + L +TATPIPRTL ++ L DIS + P R+PI+T I+ + +E+ Sbjct: 727 ERLKELKASVDCLTLTATPIPRTLHMSLLKIRDISLLETPPRERRPIETHILEFS--EEI 784 Query: 472 IER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530 I R ++ + G + +++ ++E + ++ +ER + + HG+MS Sbjct: 785 IARAIRREVERGGQVFYLHNRVETLPQ--VKTFIERLVP-----EVMVEVAHGKMSSHQL 837 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 E +M F +G +L++TT+IE GI++ +A+ III+ A+ +G+AQL+QLRGRVGR + + Sbjct: 838 EEIMHRFIHGGFHVLVSTTIIENGINIPNANTIIIDRADMYGIAQLYQLRGRVGRSDRTA 897 Query: 591 SCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 L Y +S+ + RL V+ + + GF +A +DL+ R G +LG +QSG Sbjct: 898 YAYLFYPAQREISELAAKRLQVIADHTELGAGFKVALKDLEVRGAGNLLGREQSG 952 >gi|134297990|ref|YP_001111486.1| transcription-repair coupling factor [Desulfotomaculum reducens MI-1] gi|134050690|gb|ABO48661.1| transcription-repair coupling factor [Desulfotomaculum reducens MI-1] Length = 1169 Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 139/404 (34%), Positives = 228/404 (56%), Gaps = 23/404 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q AI ++ QDM + M R+L GDVG GKT VAL A AV Q ++ P Sbjct: 624 PYEETPDQLRAIGEVKQDMEKVRPMDRLLCGDVGYGKTEVALRAAFKAVMDNKQVAVLVP 683 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHY ++ N I +E+++ +R+ L +A G+ I++GTH L Q+ Sbjct: 684 TTILAQQHYNTFRERFANYPIRIEMLSRFRTAKEQRQVLAGLATGEVDIVVGTHRLVQND 743 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I + L L++VDE+ RFGV + +L Q VL ++ATPIPRTL ++ +G D S + Sbjct: 744 IVFKDLGLLVVDEEQRFGVSHKERLKQIRKNVDVLTLSATPIPRTLHMSLVGVRDTSLLE 803 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P R P++T ++ + + + E +K L+ G + Y++ ++ + ++R Sbjct: 804 TPPEERFPVQTYVLEEDPV-LIREAIKRELNRGGQVYFVHNRVMD---------LDRLAG 853 Query: 510 LHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 ++ + I + HG+M + + E +M F +G +L+ TT++E G+D+ + + +I+++ Sbjct: 854 WLQNLVPEARIGMAHGQMKEDELEQIMIEFMDGEYDVLVCTTIVETGLDISNVNTLIVKD 913 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622 A+HFGL+QL+QLRGRVGR ++ L+ L++ S RLS ++ TE G+ IA Sbjct: 914 ADHFGLSQLYQLRGRVGRTNRLAYAYFLFRRDKVLTEISERRLSAIREFTEFGSGYKIAM 973 Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQP--ELHDSLLEIARKDAK 664 DL+ R G ILG +Q G IA+ +L+ LLE A ++A+ Sbjct: 974 RDLEIRGAGNILGAQQHGH----IAEVGFDLYCRLLEEAVQEAR 1013 >gi|310286850|ref|YP_003938108.1| ATP-dependent DNA helicase [Bifidobacterium bifidum S17] gi|309250786|gb|ADO52534.1| ATP-dependent DNA helicase [Bifidobacterium bifidum S17] Length = 898 Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 146/387 (37%), Positives = 204/387 (52%), Gaps = 58/387 (14%) Query: 347 NTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405 NT+ + V ++TG M A RR+AL A G II+ THA F + Q L LV++DEQHR Sbjct: 490 NTRHVPVILLTGGMKLAARRRALALAASGDPCIIVATHAAFSKTFQAPNLALVVIDEQHR 549 Query: 406 FGVQQRLKL-TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464 FGV+QR L T+ PH+L+MTATPIPRT +T GD+DIS +TE P GRKPI+T I+P Sbjct: 550 FGVEQRESLRTKNDVVPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRTFIVP 609 Query: 465 INR---IDEVIERLKVVLSEGKKAYWICPQI----------------------------- 492 + + + ++ + G++AY +CP+I Sbjct: 610 EDDGRMMGSMFAHIRGRIDAGERAYVVCPRIDADDESDGDDDTSGASQIGVYDDSDAYRR 669 Query: 493 ----------------EEKKESNFR----SVVE---RFNSLHEHFTSSIAIIHGRMSDID 529 E+ + R SV E R +SL + A + GR D Sbjct: 670 ESATAAANTSASAPSQEDGDGAPSRPPLHSVAEIERRLSSLPQFRGIRFATLTGRDDDAT 729 Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589 K+ VM F +G +L+ATTVIEVG+DV AS I+I +A+ +GL+QLHQLRGRVGRG Sbjct: 730 KQQVMADFADGATPVLVATTVIEVGVDVPQASCIVIFDADRYGLSQLHQLRGRVGRGGTD 789 Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649 S L+ + RL V++ T DG IA+ DL+ R G++LG QSG L Sbjct: 790 SWAFLISRAEDGGPAQQRLQVIQGTLDGAQIAQADLEFRGAGDVLGDAQSGGKSGLKLLR 849 Query: 650 ELHDS-LLEIARKDAKHILTQDPDLTS 675 + D+ ++ AR+ A +L DPDL+ Sbjct: 850 VVKDAKIIADARERAGRLLADDPDLSG 876 Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 61/161 (37%), Positives = 89/161 (55%), Gaps = 12/161 (7%) Query: 184 VLPEWIEKD--LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241 VLPE + + LL + AEAF IH+P DF+ A + Y+E Q ALL Sbjct: 268 VLPESVRESNHLLHR------AEAFLAIHDPLSTADFKR---AIGTMRYEEAFVSQTALL 318 Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301 R +K+ +P + + + ++PF T Q I DI DM+++ M R+LQG+ Sbjct: 319 QSRSNVRKDAALPC-AGVALRDRFIESLPFPLTGGQREVIDDIGVDMAREYPMQRLLQGE 377 Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342 VGSGKT+VA+ AM A +G QAV++AP +LA+QH+ I Sbjct: 378 VGSGKTVVAVAAMLQAAGSGHQAVLVAPTQVLAEQHHATIS 418 >gi|307822340|ref|ZP_07652572.1| transcription-repair coupling factor [Methylobacter tundripaludum SV96] gi|307736906|gb|EFO07751.1| transcription-repair coupling factor [Methylobacter tundripaludum SV96] Length = 1155 Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 136/381 (35%), Positives = 210/381 (55%), Gaps = 21/381 (5%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 PF T Q++AI+ IL+DM+ + M R++ GDVG GKT V++ A AV+ G Q ++ Sbjct: 602 FPFEETPDQQTAIEAILEDMASPHPMDRVICGDVGFGKTEVSMRAAFIAVQNGKQVAVLV 661 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQHY+ + + + VE+++ + +++ + + G+ I+IGTH L Sbjct: 662 PTTLLAQQHYQNFRDRFADWPVRVEVLSRFVSPKQQKEITDDLEQGKVDIVIGTHKLLSK 721 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 I+Y L LV++DE+HRFGV Q+ + +L +TATPIPRTL + G DIS I Sbjct: 722 EIKYKALGLVVIDEEHRFGVTQKEHFKKLRNELDMLTLTATPIPRTLNMAMSGLRDISII 781 Query: 449 TEKPAGRKPIKTVIIPINRID-EVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 P R IKT I ID ++ E + G + +++ ++ EK ++V Sbjct: 782 ASPPPNRHAIKTFI--SQWIDAQIREACLREIKRGGQVFFLHNDVKSMEKMARELEALVP 839 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + I I HG+M + + E +M F + LL+ +T+IE GID+ A+ III Sbjct: 840 E---------ARIEIAHGQMPERELERIMLDFYHQRFNLLLCSTIIESGIDIPSANTIII 890 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTED---GFL 619 A+ GLAQLHQLRGRVGR + + PP LSK++ RL ++ + D GF+ Sbjct: 891 NRADKLGLAQLHQLRGRVGRSHHRAYAYFVV-PPLTLLSKDAIKRLEAVEASGDLGAGFM 949 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 ++ D++ R GE+LG QSG Sbjct: 950 LSSHDMEIRGAGELLGDDQSG 970 >gi|225873674|ref|YP_002755133.1| transcription-repair coupling factor [Acidobacterium capsulatum ATCC 51196] gi|225794589|gb|ACO34679.1| transcription-repair coupling factor [Acidobacterium capsulatum ATCC 51196] Length = 1189 Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 143/408 (35%), Positives = 227/408 (55%), Gaps = 17/408 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q K G + + + ++ + ++ T Q SAI DI +DM M R+L Sbjct: 607 LLKLYAQRKAAQGHAYSADNEFQREFEDSFDYNETDDQLSAIADIKRDMESTTPMDRLLC 666 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV+ G Q ++ P +L+ QHYE KK + I +E+++ Sbjct: 667 GDVGYGKTEVAMRAAFKAVQDGKQVAVLTPTTVLSFQHYETFKKRFRQFPIHIEMLSRFR 726 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 ++ +ER+ G+ I+IGTH L ++++ + L+IVDE+ RFGV+ + +L Q Sbjct: 727 TAKEQKLIVERVEAGEIDILIGTHRLLSKDLKFHDIGLLIVDEEQRFGVRHKERLKQLRA 786 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER--LKV 477 VL M+ATPIPRTL ++ +G D+S I P R I+T++ + DE + R ++V Sbjct: 787 QLDVLTMSATPIPRTLHMSLVGLRDMSVIETPPKDRMAIQTIVA---KFDEKLVRSAVEV 843 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537 L G + Y++ ++E E + + L H + I + HG+M + + E VM +F Sbjct: 844 ELERGGQIYFVHNRVETIYE-----IAAKIQELVPH--ARITVGHGQMGEAELEKVMLAF 896 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 N +L+AT++IE G+D+ A+ I+I A+ GL++L+QLRGRVGR + L+ Sbjct: 897 MNHEYDVLVATSIIENGLDIPLANTILINRADRHGLSELYQLRGRVGRSNRRAYAYLMIP 956 Query: 598 P--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 P L++ + RL+ LK D GF IA DL+ R G +LG +QSG Sbjct: 957 PEQELTEIARRRLAALKEFSDLGAGFKIAALDLELRGAGNMLGGEQSG 1004 >gi|239629010|ref|ZP_04672041.1| transcription-repair coupling factor [Clostridiales bacterium 1_7_47_FAA] gi|239519156|gb|EEQ59022.1| transcription-repair coupling factor [Clostridiales bacterium 1_7_47FAA] Length = 1186 Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 133/376 (35%), Positives = 206/376 (54%), Gaps = 13/376 (3%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q AI + DM + M R++ GDVG GKT VAL A AV+ Q V + P Sbjct: 634 PYDETDDQMDAIDAVKTDMESRRIMDRLICGDVGYGKTEVALRAAFKAVQDSKQVVYLVP 693 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHY + ++ + V++++ A +++ LE + G I+IGTH + Sbjct: 694 TTILAQQHYNTFVQRMKDFPVRVDMLSRFCTPARQKRTLEDLRKGMVDIVIGTHRVLSKD 753 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +Q+ L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ G D+S + Sbjct: 754 MQFKDLGLLIIDEEQRFGVAHKEKIKQLKENVDVLTLTATPIPRTLHMSLAGIRDMSVLE 813 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 E P R PI+T ++ N + V E + L+ + Y++ ++ ++ V R + Sbjct: 814 EPPVDRTPIQTYVMEYNE-EMVREAINRELARNGQVYYVYNRV-----TDIDEVANRIQA 867 Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 L + A HG+M + + E +M F NG +L++TT+IE G+D+ +A+ +II +A+ Sbjct: 868 LVPEAVVTFA--HGQMREHELERIMADFINGEIDVLVSTTIIETGLDIPNANTMIIHDAD 925 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEED 624 GL+QL+QLRGRVGR S L+Y L + + RL ++ TE G IA D Sbjct: 926 RMGLSQLYQLRGRVGRSNRTSYAFLMYRRDKLLKEEAEKRLQAIREFTELGSGIKIAMRD 985 Query: 625 LKQRKEGEILGIKQSG 640 L+ R G +LG +Q G Sbjct: 986 LEIRGAGNVLGAEQHG 1001 >gi|322807864|emb|CBZ05439.1| transcription-repair coupling factor [Clostridium botulinum H04402 065] Length = 1168 Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 145/437 (33%), Positives = 232/437 (53%), Gaps = 35/437 (8%) Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EWT + + + + +E+ + L +R K G + + ++ P+ T Q Sbjct: 573 EWTKTKNKVKKSIEEIAEDLVKLYAIRASLK---GYKYSDDTVWQKQFEEEFPYEETPDQ 629 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 AI+DI +DM M R+L GDVG GKT VA+ A AV G Q + P ILAQQH Sbjct: 630 LLAIEDIKKDMESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVAFLVPTTILAQQH 689 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y K+ + I V++I+ + ++ ++ I G I+IGTH + Q I++ L L Sbjct: 690 YNNFKQRFSDFPITVDVISRFRTLSEQKATIKSIKEGNVDILIGTHRILQKDIKFKDLGL 749 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +I+DE+ RFGV+ + K+ VL ++ATPIPRTL ++ +G DIS I P R P Sbjct: 750 LIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLVGVRDISVIETPPEERYP 809 Query: 458 IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515 ++T ++ N D++I + + +S G + Y++ ++E S+HE + Sbjct: 810 VQTYVVEYN--DQLIRDSILREISRGGQIYFVYNRVE---------------SIHEMASY 852 Query: 516 -------SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 + I HG+M + + E+V+ F +LIATT+IE G+D+ + + +II +A Sbjct: 853 ISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDA 912 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623 + GL+QL+QLRGRVGR ++ C L Y L++ + RL +K+ TE GF IA + Sbjct: 913 DKMGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALK 972 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R G ++G Q G Sbjct: 973 DLEIRGAGNMMGSAQHG 989 >gi|110679958|ref|YP_682965.1| transcription-repair coupling factor [Roseobacter denitrificans OCh 114] gi|109456074|gb|ABG32279.1| transcription-repair coupling factor [Roseobacter denitrificans OCh 114] Length = 1154 Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 142/399 (35%), Positives = 224/399 (56%), Gaps = 23/399 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P++ T Q AI D++ D++ N M R++ GDVG GKT VA+ A A +G Q ++AP Sbjct: 594 PYTETDDQLRAIADVIDDLTSGNPMDRLVCGDVGFGKTEVAMRAAFVAAMSGVQVALIAP 653 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHY+ + + I V ++ +P + E ++ G I+IGTHAL Sbjct: 654 TTLLARQHYKSFAERFRGFPINVRQLSRFVPTKEANETREGLSRGTVDIVIGTHALLAQG 713 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ L L+I+DE+ FGV + +L Q T HVL +TATPIPRTL L+ G D+S I Sbjct: 714 IRFQNLGLLIIDEEQHFGVTHKERLKQLRTDIHVLTLTATPIPRTLQLSLTGVRDLSIIG 773 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R I+T ++ D V R + +L E G +++++ P+I + E +E Sbjct: 774 TPPVDRLAIRTY---VSEFDTVTLR-EALLREHYRGGQSFYVVPRISDLPE------IEA 823 Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 F L E + + HG+M+ + + M++F +G +L+ATT++E G+D+ A+ +I+ Sbjct: 824 F--LTEQLPELTYVVAHGQMAAGELDDRMNAFYDGKFDILLATTIVESGLDIPTANTMIV 881 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 A+ FGLAQL+Q+RGRVGR + + L P L+ + RL VL + + GF + Sbjct: 882 HRADMFGLAQLYQIRGRVGRSKTRAYAYLTTKPRARLTATAEKRLRVLSSLDTLGAGFTL 941 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 A +DL R G +LG +QSG + + EL+ S+LE A Sbjct: 942 ASQDLDIRGAGNLLGEEQSGQMRDV--GFELYQSMLEEA 978 >gi|289450268|ref|YP_003474746.1| transcription-repair coupling factor [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184815|gb|ADC91240.1| transcription-repair coupling factor [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 1241 Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 139/379 (36%), Positives = 206/379 (54%), Gaps = 15/379 (3%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + PF T Q IK++ DM M R+L GDVG GKT VA A+ AV G QA ++ Sbjct: 678 SFPFEETDDQLRCIKEVSADMESDKVMDRLLCGDVGFGKTEVAFRALFKAVMGGKQAALL 737 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 AP +LAQQHYE I V +++ A + K L +A G ++IGTH L Sbjct: 738 APTTVLAQQHYENFMNRINGFPIRVGLLSRFANDAMQHKTLSGLATGNIDVVIGTHRLLS 797 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++ KL L+I+DE+ RFGV+ + KL VL ++ATPIPRTL + G DIS Sbjct: 798 KDVKFKKLGLLIIDEEQRFGVEHKEKLKVNYQGVDVLTLSATPIPRTLHMALSGIRDISV 857 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 I E P R+ + T ++ + VI+ + S + +++ +N + + Sbjct: 858 IEEAPLDRRSVLTYVMEYDPA-IVIDAINREFSRHGQVFYLY--------NNTAGIDAKV 908 Query: 508 NSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 N L E + IA HG+MS+ E V++ F G +L+ TT+IE GID+ + + +I+E Sbjct: 909 NELQEALPGARIAAGHGKMSEKQLEQVINDFYAGETDILVCTTIIESGIDMPNVNTLIVE 968 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIA 621 NA+ GLAQL+QLRGRVGR + + Y L++ + RL+ +++ TE GF IA Sbjct: 969 NADRLGLAQLYQLRGRVGRSGRQAYAYITYRRDKVLTEVAEKRLTAIRDFTELGSGFKIA 1028 Query: 622 EEDLKQRKEGEILGIKQSG 640 +DL+ R G ILG +Q G Sbjct: 1029 MKDLEVRGAGNILGGEQHG 1047 >gi|218231044|ref|YP_002364903.1| transcription-repair coupling factor [Bacillus cereus B4264] gi|218159001|gb|ACK58993.1| transcription-repair coupling factor [Bacillus cereus B4264] Length = 1176 Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 138/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I +I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 614 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N I E IER L+ G + Y++ ++E E+K Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALIREAIER---ELARGGQVYFLYNRVEDIERKAD 850 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988 >gi|110799729|ref|YP_697172.1| transcription-repair coupling factor [Clostridium perfringens ATCC 13124] gi|110674376|gb|ABG83363.1| transcription-repair coupling factor [Clostridium perfringens ATCC 13124] Length = 1162 Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 148/431 (34%), Positives = 230/431 (53%), Gaps = 23/431 (5%) Query: 219 EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EW + A+ R + +++ + L R K G + + + ++ P+ T Q Sbjct: 567 EWQKAKAKVRKSINDIAGDLVKLYAERSTVK---GYKFSKDTQWQKQFEDEFPYEETPDQ 623 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 SAI+DI DM M R+L GDVG GKT VA+ A AV G Q + P ILA+QH Sbjct: 624 LSAIEDIKSDMETNKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTTILAEQH 683 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y+ +KK I +++I+ + + + L+ + G I+IGTH L IQ+ L L Sbjct: 684 YKNMKKRFAGFPITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDIQFKDLGL 743 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +IVDE+ RFGV Q+ K+ VL ++ATPIPRTL ++ G DIS I P R P Sbjct: 744 LIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIETPPENRYP 803 Query: 458 IKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 I+T ++ N D++I L+ + +G + Y++ ++E S+ E N + E Sbjct: 804 IQTYVVEQN--DQLIRDAILREINRDG-QVYFVHNRVE--------SIQEVANYIQELVP 852 Query: 516 SSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 A +IHG+M++ E+ M F +L+ T++IE GID+ + + +I+ +A+ GL+ Sbjct: 853 ECKATVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLS 912 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 QL+QLRGRVGR +++ LY L++ + RL LK+ TE GF IA DL+ R Sbjct: 913 QLYQLRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRG 972 Query: 630 EGEILGIKQSG 640 G ++G Q G Sbjct: 973 AGNMMGSAQHG 983 >gi|229153832|ref|ZP_04281963.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 4342] gi|228629636|gb|EEK86332.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 4342] Length = 1176 Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 138/387 (35%), Positives = 215/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I++I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 614 QEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R PI+T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 794 RDLSVIETPPENRFPIQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 850 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988 >gi|168213408|ref|ZP_02639033.1| transcription-repair coupling factor [Clostridium perfringens CPE str. F4969] gi|170715029|gb|EDT27211.1| transcription-repair coupling factor [Clostridium perfringens CPE str. F4969] Length = 1168 Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 148/431 (34%), Positives = 230/431 (53%), Gaps = 23/431 (5%) Query: 219 EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EW + A+ R + +++ + L R K G + + + ++ P+ T Q Sbjct: 573 EWQKAKAKVRKSINDIAGDLVKLYAERSTVK---GYKFSKDTQWQKQFEDEFPYEETPDQ 629 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 SAI+DI DM M R+L GDVG GKT VA+ A AV G Q + P ILA+QH Sbjct: 630 LSAIEDIKSDMETNKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTTILAEQH 689 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y+ +KK I +++I+ + + + L+ + G I+IGTH L IQ+ L L Sbjct: 690 YKNMKKRFAGFPITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDIQFKDLGL 749 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +IVDE+ RFGV Q+ K+ VL ++ATPIPRTL ++ G DIS I P R P Sbjct: 750 LIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIETPPENRYP 809 Query: 458 IKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 I+T ++ N D++I L+ + +G + Y++ ++E S+ E N + E Sbjct: 810 IQTYVVEQN--DQLIRDAILREINRDG-QVYFVHNRVE--------SIQEVANYIQELVP 858 Query: 516 SSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 A +IHG+M++ E+ M F +L+ T++IE GID+ + + +I+ +A+ GL+ Sbjct: 859 ECKATVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLS 918 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 QL+QLRGRVGR +++ LY L++ + RL LK+ TE GF IA DL+ R Sbjct: 919 QLYQLRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRG 978 Query: 630 EGEILGIKQSG 640 G ++G Q G Sbjct: 979 AGNMMGSAQHG 989 >gi|300087739|ref|YP_003758261.1| transcription-repair coupling factor [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527472|gb|ADJ25940.1| transcription-repair coupling factor [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 1148 Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 146/389 (37%), Positives = 211/389 (54%), Gaps = 14/389 (3%) Query: 258 EGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316 E I Q+ L + P++ T Q AI +I +DM Q M R++ GDVG GKT VAL A Sbjct: 588 EDTIWQRELEDSFPYTETSDQLQAIDEIKKDMEQPQPMDRLVLGDVGYGKTEVALRAAFK 647 Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376 AV Q I+ P +LAQQHY I ++ ++ + +ER+A G Sbjct: 648 AVMDNRQVAILVPTTVLAQQHYSTFSHRLAAFPITIDSLSRFRTDTEQSSIIERLASGSI 707 Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436 IIIGTH L Q +++ L LVI+DE+ RFGV + + +L ++ATPIPRTL Sbjct: 708 DIIIGTHRLLQGDVKFKHLGLVIIDEEQRFGVLHKDYFKKLRKEIDILTLSATPIPRTLE 767 Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496 L+ G DIS I P R P+KTV ++ DE + + ++SE ++ I + + Sbjct: 768 LSLSGIKDISIIDTPPQERHPVKTV---VSSFDEYLIK-DAIISEMERNGQIF-FVHNRI 822 Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556 FR + N + E +SI + HG+MS+ + E VM SF +G +L+ TT+IE G+D Sbjct: 823 VDIFRIANQLRNIVPE---ASIQVAHGQMSERELEQVMSSFVDGDIDVLVCTTIIESGVD 879 Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT 614 + +A+ III +A+ GL QL+QLRGRVGR + + LLY + NS RL + Sbjct: 880 IPNANTIIINDADKLGLTQLYQLRGRVGRSTQSAFAYLLYDKNREFKGNSAQRLQTIYEA 939 Query: 615 E---DGFLIAEEDLKQRKEGEILGIKQSG 640 G+ IA +DL+ R G +LG KQSG Sbjct: 940 ASLGSGYTIALKDLEIRGAGTLLGSKQSG 968 >gi|154684574|ref|YP_001419735.1| hypothetical protein RBAM_000640 [Bacillus amyloliquefaciens FZB42] gi|154350425|gb|ABS72504.1| Mfd [Bacillus amyloliquefaciens FZB42] Length = 1177 Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/380 (35%), Positives = 213/380 (56%), Gaps = 21/380 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q +I++I +DM ++ M R+L GDVG GKT VA+ A A+ G Q ++ P Sbjct: 621 PYQETEDQLRSIQEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQVALLVP 680 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHYE I + Q+ I + +++ + + ++ + +G I+IGTH L Sbjct: 681 TTILAQQHYETIMERFQDYPINIGLLSRFRTRKESNETIKGLKNGTVDIVIGTHRLLSKD 740 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG D+S I Sbjct: 741 VVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGVRDLSVIE 800 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 P R P++T ++ N + E IER L+ G + Y++ +++ E+K +V Sbjct: 801 TPPENRFPVQTYVVEYNGALVREAIER---ELARGGQVYFLYNRVDDIERKADEISMLVP 857 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + +A HG+M++ + ESVM +F G +L++TT+IE G+D+ + + +I+ Sbjct: 858 ---------DAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIV 908 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620 + + GL+QL+QLRGRVGR ++ Y L++ + RL +K TE GF I Sbjct: 909 FDGDKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKI 968 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL R G +LG +Q G Sbjct: 969 AMRDLTIRGAGNLLGAQQHG 988 >gi|310779687|ref|YP_003968020.1| transcription-repair coupling factor [Ilyobacter polytropus DSM 2926] gi|309749010|gb|ADO83672.1| transcription-repair coupling factor [Ilyobacter polytropus DSM 2926] Length = 991 Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 137/378 (36%), Positives = 205/378 (54%), Gaps = 16/378 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P++ TK Q +I+++ QDM M RI+ GDVG GKT VA+ A A+ G Q V+MAP Sbjct: 463 PYNETKDQMRSIEEVKQDMESHTVMDRIVCGDVGYGKTEVAMRAAFKALMDGKQVVVMAP 522 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA QHY+ +N I + +++ + ++++ G ++IGTH L Sbjct: 523 TTVLASQHYQRFLDRFKNYPIEISLLSRLKSDKDQNDIIKKLKAGTVDLVIGTHRLLSKD 582 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L LVI+DE+ +FGV+ + KL +L +TATPIPRTL L LG DIS I Sbjct: 583 VGFKNLGLVIIDEEQKFGVKAKEKLKHFRANVDMLTLTATPIPRTLNLAFLGIRDISIIQ 642 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R P++T I R I E + +K V EG+ Y N + +E Sbjct: 643 TPPPNRLPVETNFIEKTRENIKEAV--MKEVAREGQIFYLFNSV------KNMKRKLEEI 694 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 S+ + + IHG+M+ + + F++G LL++TT+IE GID+ +A+ IIIEN Sbjct: 695 ESIIPKYVKT-TYIHGQMTPKEIRDRIKDFEDGEVDLLLSTTIIENGIDIENANTIIIEN 753 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT---EDGFLIAE 622 + GL+Q++QLRGRVGRG + C L+ ++K R L+N GF ++ Sbjct: 754 IDKLGLSQVYQLRGRVGRGSRKAYCYLVVDKDKKMTKKGEQRKDSLENIGVFGAGFQLSM 813 Query: 623 EDLKQRKEGEILGIKQSG 640 ED++ R GEILG KQ G Sbjct: 814 EDMRIRGAGEILGEKQHG 831 >gi|328948120|ref|YP_004365457.1| transcription-repair coupling factor [Treponema succinifaciens DSM 2489] gi|328448444|gb|AEB14160.1| transcription-repair coupling factor [Treponema succinifaciens DSM 2489] Length = 1246 Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 143/415 (34%), Positives = 234/415 (56%), Gaps = 17/415 (4%) Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 E +A ++ L ++Q + P + E A + P+ T Q SA ++I DM + Sbjct: 668 EEIAEKLIDLYSKRQASRGFPFPKDTEWNAAFEAA--FPYEDTPDQFSATQEIKADMEKP 725 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351 M R++ GDVG GKT +A+ A AV G Q +AP ILA+QH+E ++ +N + Sbjct: 726 VPMDRLVCGDVGYGKTEIAMRAAFKAVMGGKQVAFLAPTTILAEQHFENSQERFKNFPVT 785 Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411 + ++ + ++K + +IA G+ IIIGTH + Q + + L L+I+DE+ RFGV+ + Sbjct: 786 IAQLSRFVSPTEQKKIISKIASGEIDIIIGTHRILQKDVIFKNLGLMIIDEEQRFGVKDK 845 Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471 KL T L M+ATPIPRTL ++ L D+S +T P R+PI+T I N DE Sbjct: 846 EKLKTLKTNIDCLAMSATPIPRTLHMSLLKIRDMSLLTTPPQNRQPIETAIEEYN--DEK 903 Query: 472 IER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530 + R ++ + G + +++ ++E +E+ + +E N + E + HG+M+ + Sbjct: 904 VARAIRNEVQRGGQVFYLHNRVETLEETRLK--LE--NLVPEML---VETAHGKMTSEEL 956 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 + + FK G +L+ATT+IE GID+ + + III+ A+ +G++QL+QLRGRVGR + + Sbjct: 957 DDIFRRFKMGGFHILVATTIIENGIDIPNVNTIIIDRADMYGVSQLYQLRGRVGRSDRKA 1016 Query: 591 SCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640 L Y + LS+ + RL V+ + TE GF IA +D++ R G +LG QSG Sbjct: 1017 YAYLFYPQNKALSEVAMKRLQVISDFTELGSGFKIAMKDMEIRGAGNLLGKDQSG 1071 >gi|257470409|ref|ZP_05634500.1| transcription-repair coupling factor [Fusobacterium ulcerans ATCC 49185] gi|317064617|ref|ZP_07929102.1| transcription-repair coupling factor [Fusobacterium ulcerans ATCC 49185] gi|313690293|gb|EFS27128.1| transcription-repair coupling factor [Fusobacterium ulcerans ATCC 49185] Length = 983 Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 139/380 (36%), Positives = 221/380 (58%), Gaps = 18/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T SQ AI+D+ +DM M R++ GDVG GKT +AL A A G Q V+M Sbjct: 452 SFPYKETASQLKAIEDVKRDMESDRIMDRVVCGDVGYGKTEIALRAAFKASIDGKQVVVM 511 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHYE + +N + +EI++ + +++ L++I+ G I+IGTH + Sbjct: 512 VPTTVLAQQHYERFTERFKNYPVSIEILSRLKSEKEQKEVLKKISAGTIDIVIGTHRILS 571 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++ L LV++DE+ +FGV+ + +L + ++ +TATPIPRTL L+ LG D+S Sbjct: 572 SDVKFKDLGLVVIDEEQKFGVKAKEQLKKLKNKIDMITLTATPIPRTLNLSLLGIRDLSV 631 Query: 448 ITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSV 503 I P GRKPI+T+ I + ++ E+I + + EG + ++I ++ EKK R + Sbjct: 632 IDTPPEGRKPIETMFIDKDDKKLKEII--MSEIAREG-QVFYIFNSVKNIEKKTHELRKL 688 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + + L IHG+M + ++ + F+NG +LI+TT+IE GID+ +A+ + Sbjct: 689 LPNYLKLD--------YIHGQMLPKEIKNKIKDFENGDIDMLISTTIIENGIDIENANTM 740 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLI 620 II+ E GL+Q++QLRGR+GRG C LL +K + R +KN D GF + Sbjct: 741 IIDGVEKLGLSQIYQLRGRIGRGRRKGYCYLLTKEHQTKKAKEREESIKNLGDSGGGFQL 800 Query: 621 AEEDLKQRKEGEILGIKQSG 640 + ED++ R GEILG KQ G Sbjct: 801 SLEDMRIRGAGEILGDKQHG 820 >gi|148381479|ref|YP_001256020.1| transcription-repair coupling factor [Clostridium botulinum A str. ATCC 3502] gi|153934098|ref|YP_001385854.1| transcription-repair coupling factor [Clostridium botulinum A str. ATCC 19397] gi|153937373|ref|YP_001389261.1| transcription-repair coupling factor [Clostridium botulinum A str. Hall] gi|148290963|emb|CAL85099.1| transcription-repair coupling factor [Clostridium botulinum A str. ATCC 3502] gi|152930142|gb|ABS35642.1| transcription-repair coupling factor [Clostridium botulinum A str. ATCC 19397] gi|152933287|gb|ABS38786.1| transcription-repair coupling factor [Clostridium botulinum A str. Hall] Length = 1168 Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 145/437 (33%), Positives = 232/437 (53%), Gaps = 35/437 (8%) Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EWT + + + + +E+ + L +R K G + + ++ P+ T Q Sbjct: 573 EWTKTKNKVKKSIEEIAEDLVKLYAIRATLK---GYKYSDDTVWQKQFEEEFPYEETPDQ 629 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 AI+DI +DM M R+L GDVG GKT VA+ A AV G Q + P ILAQQH Sbjct: 630 LLAIEDIKRDMESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVAFLVPTTILAQQH 689 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y K+ + I V++I+ + ++ ++ I G I+IGTH + Q I++ L L Sbjct: 690 YNNFKQRFSDFPITVDVISRFRTLSEQKATIKSIKEGNVDILIGTHRILQKDIKFKDLGL 749 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +I+DE+ RFGV+ + K+ VL ++ATPIPRTL ++ +G DIS I P R P Sbjct: 750 LIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLVGVRDISVIETPPEERYP 809 Query: 458 IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515 ++T ++ N D++I + + +S G + Y++ ++E S+HE + Sbjct: 810 VQTYVVEYN--DQLIRDSILREISRGGQIYFVYNRVE---------------SIHEMASY 852 Query: 516 -------SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 + I HG+M + + E+V+ F +LIATT+IE G+D+ + + +II +A Sbjct: 853 ISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDA 912 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623 + GL+QL+QLRGRVGR ++ C L Y L++ + RL +K+ TE GF IA + Sbjct: 913 DKMGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALK 972 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R G ++G Q G Sbjct: 973 DLEIRGAGNMMGSAQHG 989 >gi|153952805|ref|YP_001393570.1| hypothetical protein CKL_0152 [Clostridium kluyveri DSM 555] gi|146345686|gb|EDK32222.1| Mfd [Clostridium kluyveri DSM 555] Length = 1173 Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 146/415 (35%), Positives = 231/415 (55%), Gaps = 21/415 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q S I+DI DM M R+L GDVG GKT VA+ A AV G Q + P Sbjct: 625 PYEETPDQLSTIQDIKMDMESDKVMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFLVP 684 Query: 330 IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 ILAQQHY FI++++ + + +++I+ A ++ ++ + G ++IGTH + Q Sbjct: 685 TTILAQQHYNNFIQRFS-DFPVKIDMISRFKTAAQQKATIKAVKIGDVDVLIGTHRILQK 743 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 +Q+ L L+I+DE+ RFGV + K+ Q VL ++ATPIPRTL ++ +G DIS I Sbjct: 744 DVQFKDLGLLIIDEEQRFGVSHKEKIKQIRKNVDVLTLSATPIPRTLHMSLVGVRDISVI 803 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVER 506 P R PI+T ++ N D++I R V+ LS G + Y++ ++E KE S + + Sbjct: 804 ETPPDERYPIQTYVVEYN--DQLI-RDAVLRELSRGGQVYFVYNRVENIKE--MASYIAK 858 Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 +A+ HG+M + + E ++ F +L++TT+IE G+D+ + + ++I Sbjct: 859 LIP-----EGKVAVAHGQMQERELEGIIMDFMQNKYDILVSTTIIETGMDIQNVNTMVIY 913 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIA 621 +A+ GL+QL+QLRGRVGR I+ C L Y L + + RL V+K TE GF IA Sbjct: 914 DADKMGLSQLYQLRGRVGRTNRIAYCYLSYRKDKVLKEVAEKRLKVIKEFTELGSGFKIA 973 Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676 +DL+ R G ++G Q G +L+ +LE + K K + ++P T+V Sbjct: 974 LKDLEIRGAGNMMGSSQHG--HMAAVGYDLYCRMLEDSIKLIKGEIDKEPVETTV 1026 >gi|332981377|ref|YP_004462818.1| transcription-repair coupling factor [Mahella australiensis 50-1 BON] gi|332699055|gb|AEE95996.1| transcription-repair coupling factor [Mahella australiensis 50-1 BON] Length = 1159 Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 141/381 (37%), Positives = 207/381 (54%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q AI++I DM M R+L GDVG GKT VAL A AV G Q ++ Sbjct: 608 SFPYQETPDQLQAIEEIKADMESDKPMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVAVL 667 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY I V++I+ ++ ++ + G IIIGTHAL Sbjct: 668 VPTTVLAQQHYNTFTNRLAGFPIKVDVISRFRSVQEQKDIVKGLKSGDIDIIIGTHALLS 727 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++++ L L+IVDE+ RFGV + + + VL +TATPIPRTL ++ G DIS Sbjct: 728 SNVKFHDLGLLIVDEEQRFGVSHKEAIKRFKNNVDVLTLTATPIPRTLHMSLSGIRDISI 787 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ DE I R ++ L G + Y++ +I S+ Sbjct: 788 IETPPEDRYPVQTYVV---EYDENIIRDAILKELGRGGQVYFVYNRIN--------SIDV 836 Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 LHE + IA+ HGRM D E VM F +G +L+ TT+IE G+D+ + + +I Sbjct: 837 MAIHLHELVPEARIAVAHGRMGDDKLERVMMDFMDGYYDVLLCTTIIETGLDIPNVNTLI 896 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL-SVLKNTE--DGFL 619 + +A+HFGLAQL+QLRGRVGR ++ Y L++ + RL ++ + TE GF Sbjct: 897 VYDADHFGLAQLYQLRGRVGRSNRLAYAYFTYKKDRVLTEEAEKRLHAITEFTEFGSGFK 956 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 IA DL+ R G +LG +Q G Sbjct: 957 IALRDLEIRGAGNLLGAEQHG 977 >gi|18311466|ref|NP_563400.1| transcription-repair coupling factor [Clostridium perfringens str. 13] gi|18146150|dbj|BAB82190.1| transcription-repair coupling factor [Clostridium perfringens str. 13] Length = 1162 Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 148/431 (34%), Positives = 230/431 (53%), Gaps = 23/431 (5%) Query: 219 EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EW + A+ R + +++ + L R K G + + + ++ P+ T Q Sbjct: 567 EWQKAKAKVRKSINDIAGDLVKLYAERSTVK---GYKFSKDTQWQKQFEDEFPYEETPDQ 623 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 SAI+DI DM M R+L GDVG GKT VA+ A AV G Q + P ILA+QH Sbjct: 624 LSAIEDIKSDMEANKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTTILAEQH 683 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y+ +KK I +++I+ + + + L+ + G I+IGTH L IQ+ L L Sbjct: 684 YKNMKKRFAGFPITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDIQFKDLGL 743 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +IVDE+ RFGV Q+ K+ VL ++ATPIPRTL ++ G DIS I P R P Sbjct: 744 LIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIETPPENRYP 803 Query: 458 IKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 I+T ++ N D++I L+ + +G + Y++ ++E S+ E N + E Sbjct: 804 IQTYVVEQN--DQLIRDAILREINRDG-QVYFVHNRVE--------SIQEIANYIQELVP 852 Query: 516 SSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 A +IHG+M++ E+ M F +L+ T++IE GID+ + + +I+ +A+ GL+ Sbjct: 853 ECKATVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLS 912 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 QL+QLRGRVGR +++ LY L++ + RL LK+ TE GF IA DL+ R Sbjct: 913 QLYQLRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRG 972 Query: 630 EGEILGIKQSG 640 G ++G Q G Sbjct: 973 AGNMMGSAQHG 983 >gi|182420058|ref|ZP_02951292.1| transcription-repair coupling factor [Clostridium butyricum 5521] gi|237669507|ref|ZP_04529487.1| transcription-repair coupling factor [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376095|gb|EDT73682.1| transcription-repair coupling factor [Clostridium butyricum 5521] gi|237654951|gb|EEP52511.1| transcription-repair coupling factor [Clostridium butyricum E4 str. BoNT E BL5262] Length = 1166 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 146/431 (33%), Positives = 236/431 (54%), Gaps = 23/431 (5%) Query: 219 EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EW + A+ R + +E+ + L MR K G + + + ++ P+ T Q Sbjct: 574 EWQKAKAKVRKSINEIAEDLVKLYAMRTTVK---GHKFSKDTQWQKQFEDEFPYDETPDQ 630 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 +++++I DM M R+L GDVG GKT VAL A AV G Q ++ P ILA+QH Sbjct: 631 LTSLEEIKADMESDKPMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVALLVPTTILAEQH 690 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y+ +K + I +++++ +++ L+++ G I++GTH L IQ+ L L Sbjct: 691 YKNMKNRFSDFPIKIDMVSRFRSAKEQKETLQKVKEGNIDILVGTHRLVSKDIQFKDLGL 750 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +IVDE+ RFGV+Q+ K+ VL ++ATPIPRTL ++ G DIS I P R P Sbjct: 751 LIVDEEQRFGVKQKEKIKNIKKNVDVLTLSATPIPRTLHMSLSGVRDISVIETPPEERYP 810 Query: 458 IKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 ++T ++ N D++I +L E G + Y++ ++E N ++ + +L Sbjct: 811 VQTYVVEQN--DQLIR--DAILREIGRGGQVYFVYNRVE-----NIDAIAKYVQNLVPE- 860 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 S + +IHG+M++ E M +F + T +L+ TT+IE G+D+ + + II+ +A+ GL+ Sbjct: 861 -SKVGVIHGQMAERQLEQEMFNFMDQTYNVLVCTTIIETGMDIQNVNTIIVYDADKMGLS 919 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 QL+QLRGRVGR I+ LLY L++ + RL LK+ TE GF IA DL+ R Sbjct: 920 QLYQLRGRVGRSNRIAYAYLLYTKDKILTEVAEKRLKALKDFTELGSGFKIAMRDLEIRG 979 Query: 630 EGEILGIKQSG 640 G ++G Q G Sbjct: 980 AGNMMGSSQHG 990 >gi|88705083|ref|ZP_01102795.1| transcription-repair coupling factor [Congregibacter litoralis KT71] gi|88700778|gb|EAQ97885.1| transcription-repair coupling factor [Congregibacter litoralis KT71] Length = 1164 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 142/430 (33%), Positives = 221/430 (51%), Gaps = 21/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W R+ +A Q+ + R++ ++ G+ + K PF T Q Sbjct: 562 QWEKAQRKAREKANDVAAQLLEVYARREARE--GVQFTSPEEDYAKFAAGFPFEETPDQA 619 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI + DM M R++ GDVG GKT VA+ A A Q ++ P +LAQQHY Sbjct: 620 AAIDAVEADMCGTGVMDRLVCGDVGFGKTEVAMRAAFIATANARQVAVLVPTTLLAQQHY 679 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + N + +E+I+ + R+ +R+ G I+IGTH L Q I++ L L+ Sbjct: 680 NSFRDRFANWPVKIEVISRFRAASDTREIAKRLESGDVDILIGTHKLIQSDIKFADLGLL 739 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+HRFGV+Q+ + +L +TATPIPRTL + G D+S I PA R I Sbjct: 740 IIDEEHRFGVRQKDSIKALRAEVDILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSI 799 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 KT + + I E + R + G + +++ + R++ + L E Sbjct: 800 KTFVREHDHGLIKEAVLRESL---RGGQVFYV--------HNEVRTIEQCAQGLKELLPD 848 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 S+A+ HG+M + E VM F + +L+ +T+IE GID+ +A+ III+ A+ FGLAQ Sbjct: 849 LSVAVAHGQMHETQLERVMSDFYHQRHHILVCSTIIETGIDIPNANTIIIDRADKFGLAQ 908 Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630 LHQLRGRVGR + LL P ++ ++ RL ++ D G+ +A DL+ R Sbjct: 909 LHQLRGRVGRSHHQAYAYLLCPPASAMTTDASKRLEAIEAAGDLGAGYQLATHDLEIRGA 968 Query: 631 GEILGIKQSG 640 GE+LG +QSG Sbjct: 969 GELLGDEQSG 978 >gi|331090628|ref|ZP_08339479.1| hypothetical protein HMPREF9477_00122 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401068|gb|EGG80663.1| hypothetical protein HMPREF9477_00122 [Lachnospiraceae bacterium 2_1_46FAA] Length = 1112 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 132/367 (35%), Positives = 210/367 (57%), Gaps = 15/367 (4%) Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI+ +DM M R++ GDVG GKT VA+ A AV+ Q V + P ILAQQHY Sbjct: 572 AIEATKRDMESNKIMDRLICGDVGYGKTEVAIRAAFKAVQENKQVVYLVPTTILAQQHYN 631 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 + + + V+++ A ++K +E G II+GTH + D +++ L L+I Sbjct: 632 TFVQRMKEFPVRVDLMCRFRTPAQQKKTIEDTKKGLVDIIVGTHRVLSDDLKFKDLGLLI 691 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 +DE+ RFGVQ + K+ + VL +TATPIPRTL ++ +G D+S + E P R PI+ Sbjct: 692 IDEEQRFGVQHKEKIKKLKENIDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPMDRIPIQ 751 Query: 460 TVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518 T ++ N DE++ E ++ LS + Y++ ++++ +E + +R SL +++ Sbjct: 752 TYVMEYN--DEMVREAIQRELSRQGQVYYVYNKVKDIEE-----ITDRIQSLVPE--AAV 802 Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578 HG+MS+ E +M F NG +L++TT+IE G+D+ +A+ +II A+ GL+QL+Q Sbjct: 803 TYAHGQMSEHQLEKIMYDFINGEIDVLVSTTIIETGLDISNANTMIIHEADKLGLSQLYQ 862 Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633 LRGRVGR ++ +LY L + + RLS ++ D GF IA DL+ R G + Sbjct: 863 LRGRVGRSNRMAYAFMLYKRDKLLKEVAEKRLSAIREFTDLGSGFKIAMRDLEIRGAGNL 922 Query: 634 LGIKQSG 640 LG +Q G Sbjct: 923 LGAEQHG 929 >gi|169343325|ref|ZP_02864335.1| transcription-repair coupling factor [Clostridium perfringens C str. JGS1495] gi|169298623|gb|EDS80704.1| transcription-repair coupling factor [Clostridium perfringens C str. JGS1495] Length = 1168 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 148/431 (34%), Positives = 230/431 (53%), Gaps = 23/431 (5%) Query: 219 EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EW + A+ R + +++ + L R K G + + + ++ P+ T Q Sbjct: 573 EWQKAKAKVRKSINDIAGDLVKLYAERSTVK---GYKFSKDTQWQKQFEDEFPYEETPDQ 629 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 SAI+DI DM M R+L GDVG GKT VA+ A AV G Q + P ILA+QH Sbjct: 630 LSAIEDIKSDMETNKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTTILAEQH 689 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y+ +KK I +++I+ + + + L+ + G I+IGTH L IQ+ L L Sbjct: 690 YKNMKKRFAGFPITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDIQFKDLGL 749 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +IVDE+ RFGV Q+ K+ VL ++ATPIPRTL ++ G DIS I P R P Sbjct: 750 LIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIETPPENRYP 809 Query: 458 IKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 I+T ++ N D++I L+ + +G + Y++ ++E S+ E N + E Sbjct: 810 IQTYVVEQN--DQLIRDAILREINRDG-QVYFVHNRVE--------SIQEVANYIQELVP 858 Query: 516 SSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 A +IHG+M++ E+ M F +L+ T++IE GID+ + + +I+ +A+ GL+ Sbjct: 859 ECKATVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLS 918 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 QL+QLRGRVGR +++ LY L++ + RL LK+ TE GF IA DL+ R Sbjct: 919 QLYQLRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRG 978 Query: 630 EGEILGIKQSG 640 G ++G Q G Sbjct: 979 AGNMMGSAQHG 989 >gi|331005187|ref|ZP_08328584.1| Transcription-repair coupling factor [gamma proteobacterium IMCC1989] gi|330421011|gb|EGG95280.1| Transcription-repair coupling factor [gamma proteobacterium IMCC1989] Length = 1163 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 138/390 (35%), Positives = 218/390 (55%), Gaps = 27/390 (6%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + PF T QE+AI + DM M R++ GDVG GKT VA+ A A +AG Sbjct: 609 QQFSSSFPFEETPDQEAAIHSVRNDMLSDKPMDRLVCGDVGFGKTEVAMRAAFIATQAGK 668 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALE-RIAHGQAHIII 380 Q ++ P +LAQQH+E F+ ++ + + V +I+ A KA+E +++ G+ I+I Sbjct: 669 QVAVLVPTTLLAQQHHENFVDRFV-DWPVNVAVIS-RFQTAKETKAIEAKVSSGEIDILI 726 Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440 GTH + Q+ +L L+I+DE+HRFGV+Q+ + + +L +TATPIPRTL + Sbjct: 727 GTHKILTTGFQFKELGLLIIDEEHRFGVRQKEAIKAFRSEVDILTLTATPIPRTLNMAMH 786 Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EK 495 D+S I PA R +KT + ++ D +I+ + VL E G + Y++ +++ EK Sbjct: 787 SIRDLSIIATPPARRLSVKTFVRAVD--DALIK--EAVLREILRGGQVYFLHNEVKTIEK 842 Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555 ++ + + HG++ + + E VM F + +L+ +T+IE GI Sbjct: 843 TARYLSELIPE---------ARVGTAHGQLREKELEHVMSEFYHQRYNVLVCSTIIETGI 893 Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN 613 D+ +A+ IIIE A+ FGLAQLHQLRGRVGR + L+ PP ++ ++ RL + Sbjct: 894 DIPNANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLMTPPPKVMTADAEKRLEAIAQ 953 Query: 614 TED---GFLIAEEDLKQRKEGEILGIKQSG 640 +D GF +A DL+ R GE+LG QSG Sbjct: 954 ADDLGAGFTLATHDLEIRGAGELLGDDQSG 983 >gi|170763931|ref|ZP_02635347.2| transcription-repair coupling factor [Clostridium perfringens B str. ATCC 3626] gi|170764087|ref|ZP_02631749.2| transcription-repair coupling factor [Clostridium perfringens E str. JGS1987] gi|170662722|gb|EDT15405.1| transcription-repair coupling factor [Clostridium perfringens E str. JGS1987] gi|170712080|gb|EDT24262.1| transcription-repair coupling factor [Clostridium perfringens B str. ATCC 3626] Length = 1168 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 148/431 (34%), Positives = 230/431 (53%), Gaps = 23/431 (5%) Query: 219 EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EW + A+ R + +++ + L R K G + + + ++ P+ T Q Sbjct: 573 EWQKAKAKVRKSINDIAGDLVKLYAERSTVK---GYKFSKDTQWQKQFEDEFPYEETPDQ 629 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 SAI+DI DM M R+L GDVG GKT VA+ A AV G Q + P ILA+QH Sbjct: 630 LSAIEDIKSDMEANKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTTILAEQH 689 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y+ +KK I +++I+ + + + L+ + G I+IGTH L IQ+ L L Sbjct: 690 YKNMKKRFAGFPITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDIQFKDLGL 749 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +IVDE+ RFGV Q+ K+ VL ++ATPIPRTL ++ G DIS I P R P Sbjct: 750 LIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIETPPENRYP 809 Query: 458 IKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 I+T ++ N D++I L+ + +G + Y++ ++E S+ E N + E Sbjct: 810 IQTYVVEQN--DQLIRDAILREINRDG-QVYFVHNRVE--------SIQEVANYIQELVP 858 Query: 516 SSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 A +IHG+M++ E+ M F +L+ T++IE GID+ + + +I+ +A+ GL+ Sbjct: 859 ECKATVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLS 918 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 QL+QLRGRVGR +++ LY L++ + RL LK+ TE GF IA DL+ R Sbjct: 919 QLYQLRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRG 978 Query: 630 EGEILGIKQSG 640 G ++G Q G Sbjct: 979 AGNMMGSAQHG 989 >gi|53803839|ref|YP_114301.1| transcription-repair coupling factor [Methylococcus capsulatus str. Bath] gi|53757600|gb|AAU91891.1| transcription-repair coupling factor [Methylococcus capsulatus str. Bath] Length = 1147 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 133/380 (35%), Positives = 212/380 (55%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T QE+AI+D+++D++ M R++ GDVG GKT VA+ A A + G Q ++ Sbjct: 599 QFPFEETPDQETAIQDVIRDLAAPRPMDRVVCGDVGFGKTEVAMRAAFIAAQNGRQVAVL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQHY+ + + +++++ + + + + + I G+ I+IGTH L Q Sbjct: 659 VPTTLLAQQHYKNFCDRFADWPMRIDVLSRFVSKKDQAQTIADIGDGKVDIVIGTHRLLQ 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 I++ L LVI+DE+HRFGV + + + L +TATPIPRTL + G +IS Sbjct: 719 KDIRFKDLGLVIIDEEHRFGVAHKEHFKKLRSEVDFLALTATPIPRTLDMALSGLREISV 778 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R I+T + + + E I R + G + Y++ +IE + + E Sbjct: 779 IATPPPHRHVIRTFVTEWDDTLVQEAITR---EIKRGGQVYFVHNKIETQPR-----LAE 830 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 R L + IA HG+M + + E++M F + +L+ TT++E GIDV A+ I+I Sbjct: 831 RLEKLVPGIRTRIA--HGQMPERELENIMLDFYHQRFNVLLCTTIVESGIDVPSANTILI 888 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 + A+ FGLAQLHQLRGRVGR + LL P ++ ++ RL ++ + GFL+ Sbjct: 889 DRADTFGLAQLHQLRGRVGRSHHRAYAYLLVPPKKAMTADAVKRLEAIEAAGELGAGFLL 948 Query: 621 AEEDLKQRKEGEILGIKQSG 640 + +DL+ R GE+LG +QSG Sbjct: 949 SSQDLEIRGAGELLGEEQSG 968 >gi|229083372|ref|ZP_04215723.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-44] gi|228699937|gb|EEL52571.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-44] Length = 1176 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 216/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I++I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 614 QEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G ++IGT Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDVVIGT 733 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N I E IER L+ G + Y++ ++E E+K Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPGLIREAIER---ELARGGQIYFLYNRVEDIERKAD 850 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF +G +L++TT+IE G+D+ Sbjct: 851 EISMLVPE---------ARVTYAHGKMNEGELESVMLSFLDGQHDVLVSTTIIETGVDIP 901 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988 >gi|219853470|ref|YP_002470592.1| hypothetical protein CKR_0127 [Clostridium kluyveri NBRC 12016] gi|219567194|dbj|BAH05178.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 1183 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 146/415 (35%), Positives = 231/415 (55%), Gaps = 21/415 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q S I+DI DM M R+L GDVG GKT VA+ A AV G Q + P Sbjct: 635 PYEETPDQLSTIQDIKMDMESDKVMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFLVP 694 Query: 330 IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 ILAQQHY FI++++ + + +++I+ A ++ ++ + G ++IGTH + Q Sbjct: 695 TTILAQQHYNNFIQRFS-DFPVKIDMISRFKTAAQQKATIKAVKIGDVDVLIGTHRILQK 753 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 +Q+ L L+I+DE+ RFGV + K+ Q VL ++ATPIPRTL ++ +G DIS I Sbjct: 754 DVQFKDLGLLIIDEEQRFGVSHKEKIKQIRKNVDVLTLSATPIPRTLHMSLVGVRDISVI 813 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVER 506 P R PI+T ++ N D++I R V+ LS G + Y++ ++E KE S + + Sbjct: 814 ETPPDERYPIQTYVVEYN--DQLI-RDAVLRELSRGGQVYFVYNRVENIKE--MASYIAK 868 Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 +A+ HG+M + + E ++ F +L++TT+IE G+D+ + + ++I Sbjct: 869 LIP-----EGKVAVAHGQMQERELEGIIMDFMQNKYDILVSTTIIETGMDIQNVNTMVIY 923 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIA 621 +A+ GL+QL+QLRGRVGR I+ C L Y L + + RL V+K TE GF IA Sbjct: 924 DADKMGLSQLYQLRGRVGRTNRIAYCYLSYRKDKVLKEVAEKRLKVIKEFTELGSGFKIA 983 Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676 +DL+ R G ++G Q G +L+ +LE + K K + ++P T+V Sbjct: 984 LKDLEIRGAGNMMGSSQHG--HMAAVGYDLYCRMLEDSIKLIKGEIDKEPVETTV 1036 >gi|182624347|ref|ZP_02952132.1| transcription-repair coupling factor [Clostridium perfringens D str. JGS1721] gi|177910565|gb|EDT72938.1| transcription-repair coupling factor [Clostridium perfringens D str. JGS1721] Length = 1168 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 148/431 (34%), Positives = 230/431 (53%), Gaps = 23/431 (5%) Query: 219 EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EW + A+ R + +++ + L R K G + + + ++ P+ T Q Sbjct: 573 EWQKAKAKVRKSINDIAGDLVKLYAERSTVK---GYKFSKDTQWQKQFEDEFPYEETPDQ 629 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 SAI+DI DM M R+L GDVG GKT VA+ A AV G Q + P ILA+QH Sbjct: 630 LSAIEDIKSDMEANKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTTILAEQH 689 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y+ +KK I +++I+ + + + L+ + G I+IGTH L IQ+ L L Sbjct: 690 YKNMKKRFAGFPITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDIQFKDLGL 749 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +IVDE+ RFGV Q+ K+ VL ++ATPIPRTL ++ G DIS I P R P Sbjct: 750 LIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIETPPENRYP 809 Query: 458 IKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 I+T ++ N D++I L+ + +G + Y++ ++E S+ E N + E Sbjct: 810 IQTYVVEQN--DQLIRDAILREINRDG-QVYFVHNRVE--------SIQEVANYIQELVP 858 Query: 516 SSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 A +IHG+M++ E+ M F +L+ T++IE GID+ + + +I+ +A+ GL+ Sbjct: 859 ECKATVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLS 918 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 QL+QLRGRVGR +++ LY L++ + RL LK+ TE GF IA DL+ R Sbjct: 919 QLYQLRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRG 978 Query: 630 EGEILGIKQSG 640 G ++G Q G Sbjct: 979 AGNMMGSAQHG 989 >gi|269792682|ref|YP_003317586.1| DEAD/DEAH box helicase domain-containing protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100317|gb|ACZ19304.1| DEAD/DEAH box helicase domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 994 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 141/408 (34%), Positives = 214/408 (52%), Gaps = 32/408 (7%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 +++ P+ T Q ++I DM + M R+L GDVG GKT +AL A A +G Sbjct: 464 EELRSTFPYRETVDQVRCWEEIRADMERPVPMDRLLVGDVGFGKTELALRAAFKAAMSGY 523 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q V++ P +LA QH + VE + +P++ + + L A G+ I+IGT Sbjct: 524 QVVVVTPTTLLASQHLSTFASRLSPFPLRVEALYRFVPRSRQEEILNDFAEGRVDILIGT 583 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + D ++ L L+++DE+HRFGV Q+ + ++ VL+++ATPIPRTL L G Sbjct: 584 HRILGDDVRARNLGLIVLDEEHRFGVMQKERWRERFPGADVLMLSATPIPRTLQLALGGY 643 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-VLSEGKKAYWICPQIEEKKESNFR 501 DIS +T P R+P+ TV+ P DE+++ + LS G + +W Sbjct: 644 KDISVMTTPPVDRRPVVTVVSPWQ--DELVKGAVLRELSRGGQVFW-------------- 687 Query: 502 SVVERFNSLHEHFTSSIAII--------HGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 V R S+H F + A++ HGRM D + ES+M F G +L+ TT+IE Sbjct: 688 -VHNRIQSMHRAFLRAKALLPGVRVEMAHGRMRDSELESLMARFVEGRLDVLLCTTIIES 746 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPPLSKNSYTRLSVLK 612 G+D+ + II+E+A GLAQL+QLRGRVGR + + + LY + + RL + Sbjct: 747 GLDLPRVNTIIVEDAHRMGLAQLYQLRGRVGRRSDQAFALFLYPRGAEAGRALERLEAIG 806 Query: 613 NTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 + E+ GF +A DL R GE+LG Q G L PEL+ +LE Sbjct: 807 SLEELGSGFHLAMMDLSIRGGGELLGTAQHGHVSSL--SPELYFQMLE 852 >gi|255521927|ref|ZP_05389164.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL J1-175] Length = 431 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 147/440 (33%), Positives = 238/440 (54%), Gaps = 22/440 (5%) Query: 12 PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71 P + +G+G++ + L ++ + DLL+ P + D R +SE++ E +T Sbjct: 8 PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60 Query: 72 ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 I G + ++ R+ K+ T G++ + F+ + LK+ G +T++GK Sbjct: 61 IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKISVGETVTISGKWD 119 Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSRLPVLPE 187 K + ++ S++ +E VY L L ++ + ++ ++ S+ + E Sbjct: 120 KSRAQVTASKIKIGAVESEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQ--DIEE 173 Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-Q 246 I +LL+K EA I+H P K+ E AR R+ Y+E L Q+ + RK + Sbjct: 174 VIPSNLLEKYQLMDRLEAVRILHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKIE 230 Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 +K GI IN + + + + ++PF TK+Q+ + +I DM M R+LQGDVGSGK Sbjct: 231 REKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGK 290 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366 T+VA IAM AA ++G Q+ +M P ILA+QH + + Q I V ++T ++ RR+ Sbjct: 291 TVVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRRE 350 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426 L + +G ++IGTHAL QD + Y++L LVI DEQHRFGV QR L +K P VL M Sbjct: 351 LLAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFM 410 Query: 427 TATPIPRTLVLTSLGDIDIS 446 TATPIPRTL +T+ G++D+S Sbjct: 411 TATPIPRTLAITAFGEMDVS 430 >gi|268318833|ref|YP_003292489.1| Transcription-repair-coupling factor [Lactobacillus johnsonii FI9785] gi|262397208|emb|CAX66222.1| Transcription-repair-coupling factor [Lactobacillus johnsonii FI9785] Length = 1165 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 137/431 (31%), Positives = 232/431 (53%), Gaps = 21/431 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT + + E +A + L +++ +K G + + + ++ P+ T Q Sbjct: 563 EWTKTKKRVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKEFEDAFPYPETPDQL 620 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I++I DM M R+L GDVG GKT VAL A A+ G Q +AP ILAQQH+ Sbjct: 621 RSIREIKADMESTKPMDRLLVGDVGFGKTEVALRAAFKAIRDGKQVAFLAPTTILAQQHF 680 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E ++ ++ + +++ ++ +E + G+ +++GTH L +Q+ L L+ Sbjct: 681 ETMQDRFKDFPVNCALLSRFQTPTEVKEIVEGVKSGKIDMVVGTHRLLSKDVQFKDLGLL 740 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L + VL +TATPIPRTL ++ +G D+S + P R PI Sbjct: 741 IIDEEQRFGVKHKERLKELKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPTNRYPI 800 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 +T + + + ++ + VL E K+ +++ +I+ + +V + L Sbjct: 801 QTYV--MEEMPSIVR--EAVLREMKRNGQVFFLHNRID-----DIDKIVSQLEELIPE-- 849 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + I IHGRMS+ E +M F +L+ TT+IE G+D+ + + +I+E+A+H+GL+Q Sbjct: 850 AKIEYIHGRMSENQMEDIMYRFSKNEFDILVTTTIIETGVDMPNVNTMIVEDADHYGLSQ 909 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGR+GR ++ LY P L++ RLS +++ TE GF IA DL R Sbjct: 910 LYQLRGRIGRSARLAYAYFLYQPNKVLTEIGEKRLSAIRDFTELGSGFKIAMRDLSIRGA 969 Query: 631 GEILGIKQSGM 641 G +LG +Q G Sbjct: 970 GNMLGKQQHGF 980 >gi|30260244|ref|NP_842621.1| transcription-repair coupling factor [Bacillus anthracis str. Ames] gi|47525306|ref|YP_016655.1| transcription-repair coupling factor [Bacillus anthracis str. 'Ames Ancestor'] gi|49183087|ref|YP_026339.1| transcription-repair coupling factor [Bacillus anthracis str. Sterne] gi|65317513|ref|ZP_00390472.1| COG1197: Transcription-repair coupling factor (superfamily II helicase) [Bacillus anthracis str. A2012] gi|165872560|ref|ZP_02217192.1| transcription-repair coupling factor [Bacillus anthracis str. A0488] gi|167635067|ref|ZP_02393384.1| transcription-repair coupling factor [Bacillus anthracis str. A0442] gi|167641515|ref|ZP_02399763.1| transcription-repair coupling factor [Bacillus anthracis str. A0193] gi|170688877|ref|ZP_02880079.1| transcription-repair coupling factor [Bacillus anthracis str. A0465] gi|170707542|ref|ZP_02897995.1| transcription-repair coupling factor [Bacillus anthracis str. A0389] gi|177655328|ref|ZP_02936857.1| transcription-repair coupling factor [Bacillus anthracis str. A0174] gi|190568951|ref|ZP_03021852.1| transcription-repair coupling factor [Bacillus anthracis Tsiankovskii-I] gi|227812727|ref|YP_002812736.1| transcription-repair coupling factor [Bacillus anthracis str. CDC 684] gi|229603766|ref|YP_002864705.1| transcription-repair coupling factor [Bacillus anthracis str. A0248] gi|254682320|ref|ZP_05146181.1| transcription-repair coupling factor [Bacillus anthracis str. CNEVA-9066] gi|254735455|ref|ZP_05193163.1| transcription-repair coupling factor [Bacillus anthracis str. Western North America USA6153] gi|254744643|ref|ZP_05202322.1| transcription-repair coupling factor [Bacillus anthracis str. Kruger B] gi|254756348|ref|ZP_05208377.1| transcription-repair coupling factor [Bacillus anthracis str. Vollum] gi|254762404|ref|ZP_05214246.1| transcription-repair coupling factor [Bacillus anthracis str. Australia 94] gi|30253565|gb|AAP24107.1| transcription-repair coupling factor [Bacillus anthracis str. Ames] gi|47500454|gb|AAT29130.1| transcription-repair coupling factor [Bacillus anthracis str. 'Ames Ancestor'] gi|49177014|gb|AAT52390.1| transcription-repair coupling factor [Bacillus anthracis str. Sterne] gi|164711688|gb|EDR17233.1| transcription-repair coupling factor [Bacillus anthracis str. A0488] gi|167510500|gb|EDR85898.1| transcription-repair coupling factor [Bacillus anthracis str. A0193] gi|167529541|gb|EDR92291.1| transcription-repair coupling factor [Bacillus anthracis str. A0442] gi|170127538|gb|EDS96412.1| transcription-repair coupling factor [Bacillus anthracis str. A0389] gi|170667101|gb|EDT17862.1| transcription-repair coupling factor [Bacillus anthracis str. A0465] gi|172080169|gb|EDT65262.1| transcription-repair coupling factor [Bacillus anthracis str. A0174] gi|190559875|gb|EDV13859.1| transcription-repair coupling factor [Bacillus anthracis Tsiankovskii-I] gi|227004902|gb|ACP14645.1| transcription-repair coupling factor [Bacillus anthracis str. CDC 684] gi|229268174|gb|ACQ49811.1| transcription-repair coupling factor [Bacillus anthracis str. A0248] Length = 1176 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 215/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I++I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 614 QEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 850 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988 >gi|329889842|ref|ZP_08268185.1| transcription-repair-coupling factor [Brevundimonas diminuta ATCC 11568] gi|328845143|gb|EGF94707.1| transcription-repair-coupling factor [Brevundimonas diminuta ATCC 11568] Length = 744 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 153/469 (32%), Positives = 243/469 (51%), Gaps = 27/469 (5%) Query: 224 ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283 AR+ A + L A L+ + + + I + + P+ T Q +AI D Sbjct: 149 ARKAKAKERLRAMAEGLIALAAKRALRVSDAITPPAGLFDEFCARFPYEETDDQLNAIGD 208 Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343 +L+D+ + M R++ GDVG GKT VAL A G Q I+ P +LA+QH++ + Sbjct: 209 VLEDLGKGTPMDRLICGDVGFGKTEVALRAAFVVAMTGQQVAIVCPTTLLARQHFKTFSE 268 Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403 I V ++ + + + G I++GTHA+ D + + L LVIVDE+ Sbjct: 269 RFAGWPIKVRHLSRMVTAKDANETRAGLKDGSFEIVVGTHAVLADQVGFKDLGLVIVDEE 328 Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463 FGV+ + KL H+L +TATPIPRTL + G ++S I P R ++T + Sbjct: 329 QHFGVKHKEKLKSLRADVHLLTLTATPIPRTLQMALSGIREMSIIATPPVDRLAVRTYVT 388 Query: 464 PINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIA 519 P D V+ R + +L E G +AY++ P++++ + +ERF L E Sbjct: 389 PW---DPVLVR-EALLREKYRGGQAYYVAPRLKDLPD------IERF--LREQVPEVKFV 436 Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579 + HG+MS E+VM +F +G +L++TT++E GID+ A+ +++ A+ FGLAQLHQ+ Sbjct: 437 VGHGQMSPTQLEAVMSAFYDGEYDVLVSTTIVESGIDIPTANTLVVHRADMFGLAQLHQI 496 Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634 RGR+GR + + L P PLS ++ RL VL++ ++ GF +A DL QR G +L Sbjct: 497 RGRIGRSKARAFAYLTTDPTKPLSLSAERRLQVLQSLDNLGAGFQLASHDLDQRGGGNLL 556 Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683 G +QSG + + EL+ +LE A + + PD RG S I Sbjct: 557 GDEQSGHIREVGV--ELYQQMLEDAVAELREQGEAAPD----RGWSPSI 599 >gi|196036345|ref|ZP_03103742.1| transcription-repair coupling factor [Bacillus cereus W] gi|196041756|ref|ZP_03109046.1| transcription-repair coupling factor [Bacillus cereus NVH0597-99] gi|196047377|ref|ZP_03114590.1| transcription-repair coupling factor [Bacillus cereus 03BB108] gi|218901255|ref|YP_002449089.1| transcription-repair coupling factor [Bacillus cereus AH820] gi|225862106|ref|YP_002747484.1| transcription-repair coupling factor [Bacillus cereus 03BB102] gi|228925307|ref|ZP_04088404.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931556|ref|ZP_04094463.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228943860|ref|ZP_04106246.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229089185|ref|ZP_04220467.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-42] gi|229119716|ref|ZP_04248978.1| Transcription-repair-coupling factor [Bacillus cereus 95/8201] gi|229182448|ref|ZP_04309700.1| Transcription-repair-coupling factor [Bacillus cereus BGSC 6E1] gi|301051789|ref|YP_003790000.1| transcription-repair coupling factor [Bacillus anthracis CI] gi|195990975|gb|EDX54946.1| transcription-repair coupling factor [Bacillus cereus W] gi|196021779|gb|EDX60473.1| transcription-repair coupling factor [Bacillus cereus 03BB108] gi|196027376|gb|EDX65993.1| transcription-repair coupling factor [Bacillus cereus NVH0597-99] gi|218538935|gb|ACK91333.1| transcription-repair coupling factor [Bacillus cereus AH820] gi|225786910|gb|ACO27127.1| transcription-repair coupling factor [Bacillus cereus 03BB102] gi|228601028|gb|EEK58596.1| Transcription-repair-coupling factor [Bacillus cereus BGSC 6E1] gi|228663741|gb|EEL19319.1| Transcription-repair-coupling factor [Bacillus cereus 95/8201] gi|228694148|gb|EEL47829.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-42] gi|228815817|gb|EEM62052.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228828108|gb|EEM73835.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834354|gb|EEM79894.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|300373958|gb|ADK02862.1| transcription-repair coupling factor [Bacillus cereus biovar anthracis str. CI] Length = 1176 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 215/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I++I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 614 QEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 850 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988 >gi|228912793|ref|ZP_04076441.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228846853|gb|EEM91857.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 1176 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 215/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I++I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 614 QEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 850 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988 >gi|328551756|gb|AEB22248.1| transcription-repair coupling factor [Bacillus amyloliquefaciens TA208] Length = 1177 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/380 (35%), Positives = 212/380 (55%), Gaps = 21/380 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +I++I +DM ++ M R+L GDVG GKT VA+ A A+ G Q ++ P Sbjct: 621 PYQETDDQLRSIQEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQVALLVP 680 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHYE I + Q+ I + +++ + + ++ + +G I+IGTH L Sbjct: 681 TTILAQQHYETIMERFQDYPINIGLLSRFRTRKESNETIKGLKNGTVDIVIGTHRLLSKD 740 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG D+S I Sbjct: 741 VVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGVRDLSVIE 800 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 P R P++T ++ N + E IER L+ G + Y++ +++ E+K +V Sbjct: 801 TPPENRFPVQTYVVEYNGALVREAIER---ELARGGQVYFLYNRVDDIERKADEISMLVP 857 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + +A HG+M++ + ESVM +F G +L++TT+IE G+D+ + + +I+ Sbjct: 858 ---------DAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIV 908 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620 + + GL+QL+QLRGRVGR ++ Y L++ + RL +K TE GF I Sbjct: 909 FDGDKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKI 968 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL R G +LG +Q G Sbjct: 969 AMRDLTIRGAGNLLGAQQHG 988 >gi|308171946|ref|YP_003918651.1| transcription-repair coupling factor [Bacillus amyloliquefaciens DSM 7] gi|307604810|emb|CBI41181.1| transcription-repair coupling factor [Bacillus amyloliquefaciens DSM 7] gi|328910016|gb|AEB61612.1| transcription-repair coupling factor [Bacillus amyloliquefaciens LL3] Length = 1177 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/380 (35%), Positives = 212/380 (55%), Gaps = 21/380 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +I++I +DM ++ M R+L GDVG GKT VA+ A A+ G Q ++ P Sbjct: 621 PYQETDDQLRSIQEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQVALLVP 680 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHYE I + Q+ I + +++ + + ++ + +G I+IGTH L Sbjct: 681 TTILAQQHYETIMERFQDYPINIGLLSRFRTRKESNETIKGLKNGTVDIVIGTHRLLSKD 740 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG D+S I Sbjct: 741 VVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGVRDLSVIE 800 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 P R P++T ++ N + E IER L+ G + Y++ +++ E+K +V Sbjct: 801 TPPENRFPVQTYVVEYNGALVREAIER---ELARGGQVYFLYNRVDDIERKADEISMLVP 857 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + +A HG+M++ + ESVM +F G +L++TT+IE G+D+ + + +I+ Sbjct: 858 ---------DAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIV 908 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620 + + GL+QL+QLRGRVGR ++ Y L++ + RL +K TE GF I Sbjct: 909 FDGDKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKI 968 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL R G +LG +Q G Sbjct: 969 AMRDLTIRGAGNLLGAQQHG 988 >gi|312134559|ref|YP_004001897.1| transcription-repair coupling factor [Caldicellulosiruptor owensensis OL] gi|311774610|gb|ADQ04097.1| transcription-repair coupling factor [Caldicellulosiruptor owensensis OL] Length = 1141 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 141/429 (32%), Positives = 233/429 (54%), Gaps = 18/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW ++ E++A + L ++Q + G + + ++ P++ T+ Q Sbjct: 554 EWQRQKQKVKKSLEVVAKDLVELYAKRQLGQ--GFKFSKDTVWQKEFEEKFPYTETEGQL 611 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 AI++I +DM + M RIL GDVG GKT VA+ A AV Q ++ P ILAQQHY Sbjct: 612 QAIEEIKRDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVLVPTTILAQQHY 671 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 ++ + +E+++ + ++K ++ + G I+IGTH L +++ L L+ Sbjct: 672 MTFSARMKDFPVTIEVLSRLKSETQQKKIIKGLREGTIDIVIGTHRLLSSDVKFKDLGLL 731 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+H+FGV+ + K+ + T VL +TATPIPRTL + LG D+S I + P R P+ Sbjct: 732 IIDEEHKFGVEAKEKIKKLKTNVDVLTLTATPIPRTLNMALLGIRDLSVIEDPPEDRFPV 791 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T ++ N I E I R +S G + +++ ++++ +E V + +L Sbjct: 792 QTFVLEYNERIIKEAILR---EISRGGQVFYLYNRVKDIQE-----VAAKLQNLVGE-DV 842 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 IA HG+M + + E V+ F G +L+ TT+IE G+D+ + + +I+E+++ GLAQL Sbjct: 843 KIACAHGQMEEEELEEVLIDFIEGRYDVLVCTTIIESGVDMPNVNTLIVEDSDRLGLAQL 902 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGRVGR I+ + LS+ + RL+ +K TE GF IA DL+ R G Sbjct: 903 YQLRGRVGRSSRIAYAYFTFRKDKVLSEQAQKRLAAIKEFTELGSGFKIAMRDLEIRGAG 962 Query: 632 EILGIKQSG 640 I+G Q G Sbjct: 963 SIIGKLQHG 971 >gi|119505858|ref|ZP_01627923.1| transcription-repair coupling protein Mfd [marine gamma proteobacterium HTCC2080] gi|119458286|gb|EAW39396.1| transcription-repair coupling protein Mfd [marine gamma proteobacterium HTCC2080] Length = 1150 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 140/431 (32%), Positives = 224/431 (51%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W R +A Q+ + R++ ++ G ++ Q+ PF T Q Sbjct: 552 QWEKARRRAREKANDVAAQLLEVYARREARQ--GFQCELDETAWQRFSEEFPFEETPDQS 609 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI+ + DM M R++ GDVG GKT VA+ A A++ Q I+ P +LAQQHY Sbjct: 610 AAIEAVRADMCATKVMDRLVCGDVGFGKTEVAMRAAFIAIQNNKQVAILVPTTLLAQQHY 669 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + VE+++ + +R+A G ++IGTH L Q + + L L+ Sbjct: 670 NSFRDRFADWPVKVEVVSRFQSNSDITSVQKRVASGDVDLLIGTHKLLQSTFAFEDLGLL 729 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 ++DE+HRFGV+Q+ + +L MTATPIPRTL + G D+S I PA R I Sbjct: 730 VIDEEHRFGVKQKEAIKALRAQVDILTMTATPIPRTLNMALGGLRDLSIIATPPARRLSI 789 Query: 459 KTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 KT + I+ + E I R + G + Y++ +++ E+ S R ++ Sbjct: 790 KTFVREHSISLVKEAILRETL---RGGQVYYLHNEVKTIEETASRLREMLPNL------- 839 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 S+ + HG++ + E VM F + +L+ +T+IE GID+ +A+ III+ A+ FGLA Sbjct: 840 --SVGVGHGQLRETALEGVMTDFYHLRHHILVCSTIIETGIDIPNANTIIIDRADKFGLA 897 Query: 575 QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRK 629 QLHQLRGRVGR + LL P ++ ++ RL ++ G+L+A DL+ R Sbjct: 898 QLHQLRGRVGRSHHQAYAYLLCPPRSTMTSDAEKRLEAIEAAGALGAGYLLATHDLEIRG 957 Query: 630 EGEILGIKQSG 640 GE+LG +QSG Sbjct: 958 AGELLGDEQSG 968 >gi|49479988|ref|YP_034406.1| transcription-repair coupling factor [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331544|gb|AAT62190.1| transcription-repair coupling factor [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 1178 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 215/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I++I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 616 QEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 675 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 676 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 735 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 736 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 795 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 796 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 852 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 853 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 903 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 904 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 963 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 964 LGSGFKIAMRDLSIRGAGNLLGAEQHG 990 >gi|168183619|ref|ZP_02618283.1| transcription-repair coupling factor [Clostridium botulinum Bf] gi|237797000|ref|YP_002864552.1| transcription-repair coupling factor [Clostridium botulinum Ba4 str. 657] gi|182673263|gb|EDT85224.1| transcription-repair coupling factor [Clostridium botulinum Bf] gi|229263299|gb|ACQ54332.1| transcription-repair coupling factor [Clostridium botulinum Ba4 str. 657] Length = 1168 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 145/437 (33%), Positives = 232/437 (53%), Gaps = 35/437 (8%) Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EWT + + + + +E+ + L +R K G + + ++ P+ T Q Sbjct: 573 EWTKTKNKVKKSIEEIAEDLVKLYAIRATLK---GYKYSDDTVWQKQFEEEFPYEETPDQ 629 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 AI+DI +DM M R+L GDVG GKT VA+ A AV G Q + P ILAQQH Sbjct: 630 LLAIEDIKRDMESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVAFLVPTTILAQQH 689 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y K+ + I V++I+ + ++ ++ I G I+IGTH + Q I++ L L Sbjct: 690 YNNFKQRFSDFPITVDVISRFRTLSEQKATIKSIKEGNVDILIGTHRILQKDIKFKDLGL 749 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +I+DE+ RFGV+ + K+ VL ++ATPIPRTL ++ +G DIS I P R P Sbjct: 750 LIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLVGVRDISVIETPPEERYP 809 Query: 458 IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515 ++T ++ N D++I + + +S G + Y++ ++E S+HE + Sbjct: 810 VQTYVVEYN--DQLIRDSILREISRGGQIYFVYNRVE---------------SIHEMASY 852 Query: 516 -------SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 + I HG+M + + E+V+ F +LIATT+IE G+D+ + + +II +A Sbjct: 853 ISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDA 912 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623 + GL+QL+QLRGRVGR ++ C L Y L++ + RL +K+ TE GF IA + Sbjct: 913 DKMGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALK 972 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R G ++G Q G Sbjct: 973 DLEIRGAGNMMGSAQHG 989 >gi|118475824|ref|YP_892975.1| transcription-repair coupling factor [Bacillus thuringiensis str. Al Hakam] gi|118415049|gb|ABK83468.1| transcription-repair coupling factor [Bacillus thuringiensis str. Al Hakam] Length = 1207 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 215/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I++I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 645 QEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 704 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 705 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 764 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 765 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 824 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 825 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 881 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 882 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 932 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 933 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 992 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 993 LGSGFKIAMRDLSIRGAGNLLGAEQHG 1019 >gi|319940955|ref|ZP_08015292.1| transcription-repair coupling factor [Sutterella wadsworthensis 3_1_45B] gi|319805528|gb|EFW02323.1| transcription-repair coupling factor [Sutterella wadsworthensis 3_1_45B] Length = 1194 Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 142/397 (35%), Positives = 204/397 (51%), Gaps = 19/397 (4%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 GI ++ Q F T Q +AI ++ DM+ M R++ GDVG GKT VAL Sbjct: 588 GIRFKIDPADYQAFREGFAFDETPDQSTAINAVVDDMTSGKSMDRLVCGDVGFGKTEVAL 647 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A A +G Q ++ P +LA+QH + + + V ++ K L + Sbjct: 648 RAAFIAAMSGRQVAVLCPTTLLAEQHAATFRDRFRAWPVTVAELSRFRTGKESAKVLAGL 707 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 A G I+IGTH L D Q+ L LV++DE+HRFGV+Q+ L + VL +TATPI Sbjct: 708 ADGTVDIVIGTHKLLSDKAQFKNLGLVVIDEEHRFGVRQKEVLRKIRAEVDVLTLTATPI 767 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICP 490 PRTL ++ G D S I P R +KT + + D I E + L G + Y++ Sbjct: 768 PRTLSMSLEGIRDFSVIATAPERRLAVKTFV--TSEQDGTIREAVLRELKRGGQVYYLHN 825 Query: 491 QIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548 ++ E + ++V + IA+ HG+M + + E VM F +L+ + Sbjct: 826 EVNTIENARARLETLVPE---------ARIAVAHGQMRERELEHVMRDFYQQRFNVLLCS 876 Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYT 606 T+IE GIDV A+ IIIE A+ FGLAQLHQLRGRVGR + LL P +K++ Sbjct: 877 TIIETGIDVPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPDGAFTKDAQK 936 Query: 607 RLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 RL ++ ED GF +A DL+ R GE+LG QSG Sbjct: 937 RLDAIQALEDLGSGFYLAMHDLEIRGAGEVLGEHQSG 973 >gi|237748656|ref|ZP_04579136.1| transcription-repair coupling factor [Oxalobacter formigenes OXCC13] gi|229380018|gb|EEO30109.1| transcription-repair coupling factor [Oxalobacter formigenes OXCC13] Length = 1152 Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 144/412 (34%), Positives = 219/412 (53%), Gaps = 17/412 (4%) Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 A ++ L R+ +K G P + + + F T Q +AI +++DM+ M Sbjct: 570 AAELLDLYARRSMRK--GFPFPLTKNDYEAFADSFGFEETPDQAAAIASVMEDMTSDKPM 627 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R++ GDVG GKT VAL A AV G Q ++AP +LA+QH + + + + + Sbjct: 628 DRLICGDVGFGKTEVALRAAFIAVMGGKQVALLAPTTLLAEQHAQTFRDRFADWPVRISE 687 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 ++ Q + ++ + G I+IGTH L + + +L L+I+DE+HRFGV+Q+ L Sbjct: 688 LSRFRTQKQVNQTIKGMEDGTVDIVIGTHKLLSKDVSFNRLGLIIIDEEHRFGVRQKEAL 747 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-E 473 VL +TATPIPRTL + G S I P R IKT + N D VI E Sbjct: 748 KAIRAEVDVLTLTATPIPRTLGMALDGLRSFSIIATAPQKRLAIKTFVRSEN--DSVIRE 805 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 L G + Y++ ++E + N R ++E N L E + I + HG+M + + E V Sbjct: 806 ACMRELKRGGQVYFLHNEVETIE--NRRIMLE--NLLPE---ARIGVAHGQMHERELEKV 858 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M F + +L+ TT+IE GIDV +A+ +++ A+ FGLAQLHQLRGR+GR + Sbjct: 859 MRDFVSHRYNILLCTTIIETGIDVPNANTMVMHRADKFGLAQLHQLRGRIGRSHHQAYAY 918 Query: 594 LLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 LL + LSK + RL ++ E+ GF +A DL+ R GE+LG +QSG Sbjct: 919 LLVNDTQTLSKQAQRRLEAIRQMEELGSGFFLAMHDLEIRGAGEVLGEEQSG 970 >gi|110803113|ref|YP_699740.1| transcription-repair coupling factor [Clostridium perfringens SM101] gi|110683614|gb|ABG86984.1| transcription-repair coupling factor [Clostridium perfringens SM101] Length = 1162 Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 145/430 (33%), Positives = 230/430 (53%), Gaps = 21/430 (4%) Query: 219 EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EW + A+ R + +++ + L R K G + + + ++ P+ T Q Sbjct: 567 EWQKAKAKVRKSINDIAGDLVKLYAERSTVK---GYKFSKDTQWQKQFEDEFPYEETPDQ 623 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 +AI+DI DM M R+L GDVG GKT VA+ A AV G Q + P ILA+QH Sbjct: 624 LAAIEDIKSDMESNKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTTILAEQH 683 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y+ +K+ I +++I+ + + + L+ + G I+IGTH L IQ+ L L Sbjct: 684 YKNMKRRFAGFPITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDIQFKDLGL 743 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +IVDE+ RFGV Q+ K+ VL ++ATPIPRTL ++ G DIS I P R P Sbjct: 744 LIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIETPPENRYP 803 Query: 458 IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 I+T ++ N D++I + + ++ G + Y++ ++E S+ E N + E Sbjct: 804 IQTYVVEQN--DQLIRDAILREINRGGQVYFVHNRVE--------SIQEVANYIQELVPE 853 Query: 517 SIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 A +IHG+M++ E+ M F +L+ T++IE GID+ + + +I+ +A+ GL+Q Sbjct: 854 CKATVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLSQ 913 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGRVGR +++ LY L++ + RL LK+ TE GF IA DL+ R Sbjct: 914 LYQLRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRGA 973 Query: 631 GEILGIKQSG 640 G ++G Q G Sbjct: 974 GNMMGSAQHG 983 >gi|222056789|ref|YP_002539151.1| transcription-repair coupling factor [Geobacter sp. FRC-32] gi|221566078|gb|ACM22050.1| transcription-repair coupling factor [Geobacter sp. FRC-32] Length = 1169 Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 148/456 (32%), Positives = 243/456 (53%), Gaps = 29/456 (6%) Query: 220 W-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 W + A+ R A E+ AG++ + +Q ++ G + ++ Q+ + T Q+ Sbjct: 581 WEKTKAKARAAIQEM-AGELLKIYAARQVEE--GHAFSPPDELYQEFEAAFAYEETPDQQ 637 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI+D+L DM K M R++ GDVG GKT VAL AV G Q ++ P +LAQQH Sbjct: 638 AAIEDVLLDMESKKPMDRLICGDVGYGKTEVALRGAFKAVMDGKQVAVLVPTTVLAQQHL 697 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E ++ + VE+++ +++ +E + +G ++IGTH L Q I + L L+ Sbjct: 698 ETFSARLKSYPVKVEMLSRFRTPKEQKEIIEGVKNGTVDVVIGTHRLLQKDIVFKDLGLL 757 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV + +L + ++ +TATPIPRTL ++ +G D+S I P R I Sbjct: 758 IIDEEQRFGVTHKERLKKYRAVVDIMTLTATPIPRTLYMSLMGIRDLSIIDTPPVDRLAI 817 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--- 515 KT + + D + E + L G + +++ + V+ ++ EH Sbjct: 818 KTFVARTSD-DLIREAVLRELRRGGQIFFV------------HNRVQTIGAMAEHLQRIV 864 Query: 516 --SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 + IA+ HG+M + + E VM SF +G LL+ TT+IE G+D+ A+ +I+ A+ FGL Sbjct: 865 PEAKIAVGHGQMEEKELERVMLSFMHGESNLLLCTTIIESGLDIPTANTLIVNRADTFGL 924 Query: 574 AQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628 +QL+QLRGRVGR ++ + LL +S ++ RL +++ + GF IA DL+ R Sbjct: 925 SQLYQLRGRVGRSKQRAYAYLLIPGEGAISADARERLKIIQELTELGAGFRIATHDLEIR 984 Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 G++LG +QSG EL+ LLE A + K Sbjct: 985 GAGDLLGARQSG--DIAAVGFELYTELLEEAIRQLK 1018 >gi|194018017|ref|ZP_03056624.1| transcription-repair coupling factor [Bacillus pumilus ATCC 7061] gi|194010354|gb|EDW19929.1| transcription-repair coupling factor [Bacillus pumilus ATCC 7061] Length = 1177 Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 136/380 (35%), Positives = 210/380 (55%), Gaps = 21/380 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +I +I QDM ++ M R+L GDVG GKT VA+ A A+ G Q ++ P Sbjct: 621 PYQETDDQIRSIHEIKQDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQVALLVP 680 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQH++ I Q+ + + ++ + + L+ + +G ++IGTH L Sbjct: 681 TTILAQQHFDTIMDRFQDYPVKIAQLSRFRTRKETTETLKGLKNGTIDMVIGTHRLLSKD 740 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG D+S I Sbjct: 741 IVYKDLGLLIIDEEQRFGVTHKEKIKQMKANIDVLTLTATPIPRTLHMSMLGVRDLSVIE 800 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 P R P++T ++ N + E IER L+ G + Y++ ++E E+K +V Sbjct: 801 TPPENRFPVQTYVVEYNGALVREAIER---ELARGGQVYFLYNRVEDIERKADEISMLVP 857 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + ++ HG+MS+ + ESVM +F G +L++TT+IE G+D+ + + +I+ Sbjct: 858 ---------DAKVSYAHGKMSENELESVMINFLEGESDVLVSTTIIETGVDIPNVNTLIV 908 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620 +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE GF I Sbjct: 909 HDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLSEVAEKRLQAIKEFTELGSGFKI 968 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL R G +LG +Q G Sbjct: 969 AMRDLTIRGAGNLLGAQQHG 988 >gi|114570035|ref|YP_756715.1| transcription-repair coupling factor [Maricaulis maris MCS10] gi|114340497|gb|ABI65777.1| transcription-repair coupling factor [Maricaulis maris MCS10] Length = 1172 Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 139/412 (33%), Positives = 223/412 (54%), Gaps = 17/412 (4%) Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313 PI + P+ T Q +AI D+L D+ + M R++ GDVG GKT VAL A Sbjct: 602 PIETSSGAFDEFCSTFPYPETDDQLNAIDDVLTDLGRGRPMDRLICGDVGFGKTEVALRA 661 Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373 +G Q I+AP +LA+QH++ + + V +++ + + + +A Sbjct: 662 AFVVALSGQQVAIVAPTTLLARQHFKTFSDRFRGWPVKVRLLSRLVTAKEAKATRDELAA 721 Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433 GQ I+IGTHAL ++++ L L++VDE+ FGV+ + +L + + HVL +TATPIPR Sbjct: 722 GQVEIVIGTHALLAKTVKFRDLGLLVVDEEQHFGVKHKERLKELRSDVHVLTLTATPIPR 781 Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493 TL L G D+S I P R ++T + P + + V E L G +A+++ P+I Sbjct: 782 TLQLALTGIRDLSIIATPPVDRLAVRTYVAPFDPV-SVREALLREKYRGGQAFFVVPRIT 840 Query: 494 EKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552 + +E+ RF L E S HG+M+ E +M +F G +L++TT++E Sbjct: 841 DLEETT------RF--LRESVPEVSFVAAHGQMAASQLEDIMTAFYEGRYDVLLSTTIVE 892 Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSV 610 GID+ A+ +II A+ FGL+QL+QLRGRVGR + + L +++++ RL V Sbjct: 893 SGIDIPTANTLIIHRADRFGLSQLYQLRGRVGRSKTRAYAYLTTPMRQKITESAEKRLKV 952 Query: 611 LKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 +++ + GF +A DL R G +LG +QSG + + EL+ S+LE A Sbjct: 953 MQSLDSLGAGFTLASHDLDLRGGGNLLGEEQSGHIRDVGV--ELYQSMLEEA 1002 >gi|261417240|ref|YP_003250923.1| transcription-repair coupling factor [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373696|gb|ACX76441.1| transcription-repair coupling factor [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327048|gb|ADL26249.1| transcription-repair coupling factor [Fibrobacter succinogenes subsp. succinogenes S85] Length = 1132 Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 140/412 (33%), Positives = 225/412 (54%), Gaps = 17/412 (4%) Query: 237 QIALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 QIA L+ K+E+ G +G + ++ + + PT Q A DI +DM M Sbjct: 530 QIARDLVELYAKRELVEGFGFPPDGNMQKEFEDSFEYDPTPDQLRATADIKRDMESHRPM 589 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R++ GDVG GKT VA+ A V + Q I+ P ILA QHYE + + + + Sbjct: 590 DRLICGDVGFGKTEVAMRAAFKCVSSNKQVAILVPTTILAAQHYENFCERFAAYPVKIAL 649 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 + +++ + IA G +I+IGTHAL + ++ L L+I+DE+ +FGV+Q+ KL Sbjct: 650 MNRYKSAKEKKEIFKEIAAGTVNIVIGTHALLSNKSEFKDLGLLIIDEEQKFGVKQKEKL 709 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 Q A L M+ATPIPR+L L+ G DIS I P R P++T + + R DEV++ Sbjct: 710 RQLRLAVDTLSMSATPIPRSLHLSMTGVRDISLINTPPINRLPVETKL--MQRDDEVLKN 767 Query: 475 LKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 + L+ G + + + +++ + E ++ + +A+ HG+M D + E V Sbjct: 768 AILDELARGGQVFVVNDRVQ-----TIYKLTEDIEAMAPE--AKVAVAHGQMEDHELERV 820 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 MD+F + +L++T++IE G+DV +A+ III NA HFG++QL+Q+RGRVGR ++ Sbjct: 821 MDAFLSRKFDILVSTSIIESGLDVPNANTIIIMNAHHFGISQLYQMRGRVGRSSVLAKAF 880 Query: 594 LL--YHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 L+ +S+ S RL L+ D G+ +A DL+ R G +LG +Q G Sbjct: 881 LVIPQRGEISQESMRRLKALEQFTDLGSGYQLAMRDLEIRGAGNLLGQEQHG 932 >gi|218261990|ref|ZP_03476631.1| hypothetical protein PRABACTJOHN_02302 [Parabacteroides johnsonii DSM 18315] gi|218223648|gb|EEC96298.1| hypothetical protein PRABACTJOHN_02302 [Parabacteroides johnsonii DSM 18315] Length = 1126 Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 142/408 (34%), Positives = 218/408 (53%), Gaps = 15/408 (3%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+L+ + K+E G + + + ++ + + T Q A D+ DM M R++ Sbjct: 530 LILLYSKRKQEKGFAYSPDSFMQHELEASFIYEDTPDQMKATADVKTDMENDRPMDRLIC 589 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LA QHY+ + ++ +E I+ Sbjct: 590 GDVGFGKTEVAIRAAFKAVSDNKQVAVLVPTTVLAFQHYQTFSERLKDFPCRIEYISRAR 649 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R+ L+ + G+ +IIIGTH + + + L L+I+DE+ +FGV + KL Q Sbjct: 650 TAKEIRETLKDLKEGKINIIIGTHRIVGKDVTFKDLGLLIIDEEQKFGVSVKEKLRQLKA 709 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 L MTATPIPRTL + +G D+S IT P R P++T + N D + E + + Sbjct: 710 NVDTLTMTATPIPRTLQFSLMGARDLSSITTPPPNRYPVQTEVERFNP-DIIREAINFEM 768 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 S + ++I +I+ E ++V+R E + IA+ HG+M E ++ F N Sbjct: 769 SRNGQVFFINNRIQNIYE--MEALVKR-----EVPDARIAVGHGQMEPDKLEKIILDFVN 821 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 +LIAT+++E GIDV +A+ III NA+ FGL+ LHQLRGRVGR + C LL PP Sbjct: 822 YEYDVLIATSIVESGIDVPNANTIIINNAQQFGLSDLHQLRGRVGRSNRKAFCYLL-SPP 880 Query: 600 LS---KNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 LS + + RL ++N + G IA +DL R G +LG +QSG Sbjct: 881 LSSLTQEARRRLQAIENFSELGSGIHIAMQDLDIRGAGNMLGAEQSGF 928 >gi|182420518|ref|ZP_02643226.2| transcription-repair coupling factor [Clostridium perfringens NCTC 8239] gi|182380350|gb|EDT77829.1| transcription-repair coupling factor [Clostridium perfringens NCTC 8239] Length = 1168 Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 148/431 (34%), Positives = 230/431 (53%), Gaps = 23/431 (5%) Query: 219 EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EW + A+ R + +++ + L R K G + + + ++ P+ T Q Sbjct: 573 EWQKAKAKVRKSINDIAGDLVKLYAERSTVK---GYKFSKDTQWQKQFEDEFPYEETPDQ 629 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 SAI+DI DM M R+L GDVG GKT VA+ A AV G Q + P ILA+QH Sbjct: 630 LSAIEDIKSDMEANKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTTILAEQH 689 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y+ +KK I +++I+ + + + L+ + G I+IGTH L IQ+ L L Sbjct: 690 YKNMKKRFAGFPITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDIQFKDLGL 749 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +IVDE+ RFGV Q+ K+ VL ++ATPIPRTL ++ G DIS I P R P Sbjct: 750 LIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIETPPENRYP 809 Query: 458 IKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 I+T ++ N D++I L+ + +G + Y++ ++E S+ E N + E Sbjct: 810 IQTYVVEQN--DQLIRDAILREINRDG-QVYFVHNRVE--------SIQEIANYIQELVP 858 Query: 516 SSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 A +IHG+M++ E+ M F +L+ T++IE GID+ + + +I+ +A+ GL+ Sbjct: 859 ECKATVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLS 918 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 QL+QLRGRVGR +++ LY L++ + RL LK+ TE GF IA DL+ R Sbjct: 919 QLYQLRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRG 978 Query: 630 EGEILGIKQSG 640 G ++G Q G Sbjct: 979 AGNMMGSAQHG 989 >gi|170756439|ref|YP_001783179.1| transcription-repair coupling factor [Clostridium botulinum B1 str. Okra] gi|169121651|gb|ACA45487.1| transcription-repair coupling factor [Clostridium botulinum B1 str. Okra] Length = 1168 Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 145/437 (33%), Positives = 232/437 (53%), Gaps = 35/437 (8%) Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EWT + + + + +E+ + L +R K G + + ++ P+ T Q Sbjct: 573 EWTKTKNKVKKSIEEIAEDLVKLYAIRATLK---GYKYSDDTVWQKQFEEEFPYEETPDQ 629 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 AI+DI +DM M R+L GDVG GKT VA+ A AV G Q + P ILAQQH Sbjct: 630 LLAIEDIKRDMESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVAFLVPTTILAQQH 689 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y K+ + I V++I+ + ++ ++ I G I+IGTH + Q I++ L L Sbjct: 690 YNNFKQRFSDFPITVDVISRFRTLSEQKATIKSIKEGNVDILIGTHRILQKDIKFKDLGL 749 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +I+DE+ RFGV+ + K+ VL ++ATPIPRTL ++ +G DIS I P R P Sbjct: 750 LIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLVGVRDISVIETPPEERYP 809 Query: 458 IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515 ++T ++ N D++I + + +S G + Y++ ++E S+HE + Sbjct: 810 VQTYVVEYN--DQLIRDSILREISRGGQIYFVYNRVE---------------SIHEMASY 852 Query: 516 -------SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 + I HG+M + + E+V+ F +LIATT+IE G+D+ + + +II +A Sbjct: 853 ISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDA 912 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623 + GL+QL+QLRGRVGR ++ C L Y L++ + RL +K+ TE GF IA + Sbjct: 913 DKMGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALK 972 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R G ++G Q G Sbjct: 973 DLEIRGAGNMMGSAQHG 989 >gi|47569902|ref|ZP_00240569.1| transcription-repair coupling factor [Bacillus cereus G9241] gi|228983309|ref|ZP_04143523.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229194444|ref|ZP_04321248.1| Transcription-repair-coupling factor [Bacillus cereus m1293] gi|47553436|gb|EAL11820.1| transcription-repair coupling factor [Bacillus cereus G9241] gi|228589034|gb|EEK47048.1| Transcription-repair-coupling factor [Bacillus cereus m1293] gi|228776423|gb|EEM24775.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 1176 Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 215/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I++I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 614 QEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 850 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988 >gi|303257068|ref|ZP_07343082.1| transcription-repair coupling factor [Burkholderiales bacterium 1_1_47] gi|302860559|gb|EFL83636.1| transcription-repair coupling factor [Burkholderiales bacterium 1_1_47] Length = 1157 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 136/377 (36%), Positives = 205/377 (54%), Gaps = 17/377 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T+ Q +AI + +DM M R++ GDVG GKT VAL A AV G Q ++ P Sbjct: 614 FEETEDQLAAINAVYRDMISDKPMDRLVCGDVGFGKTEVALRAAFMAVMGGKQVAVLCPT 673 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA+QH + + N + + ++ ++E I +G I++GTH L D + Sbjct: 674 TLLAEQHAQTFRDRFANWPVRIAELSRFRSSKEVNASIEGIKNGTIDIVVGTHKLLSDKV 733 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 Q+ L LV++DE+HRFGV+Q+ +L + +L +TATPIPRTL ++ G D S I Sbjct: 734 QFKDLGLVVIDEEHRFGVRQKEQLKSLRSEVDILTLTATPIPRTLSMSLEGIRDFSVIAT 793 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R IKT + R + + R V+ L G + Y++ ++E + + R + Sbjct: 794 APQKRLAIKTF---VQRESDSLIREAVLRELKRGGQVYFLHNEVETIENARM-----RLD 845 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 L + I + HG+M++ + E VM F +L+ TT+IE GID+ +A+ II+ A Sbjct: 846 QLLPE--ARIGVAHGQMNERELERVMRDFYAQRTNVLLCTTIIETGIDIPNANTIIMHRA 903 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623 + FGLAQLHQLRGRVGR + LL ++KN+ RL +K E+ GF +A Sbjct: 904 DKFGLAQLHQLRGRVGRSHHQAYAYLLTPGEGAMTKNAEKRLEAIKEMEELGSGFYLAMH 963 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R GE+LG QSG Sbjct: 964 DLEIRGAGEVLGEHQSG 980 >gi|303232983|ref|ZP_07319663.1| transcription-repair coupling factor [Atopobium vaginae PB189-T1-4] gi|302480910|gb|EFL43990.1| transcription-repair coupling factor [Atopobium vaginae PB189-T1-4] Length = 1138 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 142/430 (33%), Positives = 227/430 (52%), Gaps = 21/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W+ A + LA + L R+Q G + + + + + + P++ T QE Sbjct: 552 DWSRACSRARASAKKLAFDLVDLYTRRQTVHGYGFSYDNQAQ--RDMEASFPYTLTSDQE 609 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 A+ DI DM Q M R+L GDVG GKT VAL A + G Q +++ P ILAQQH+ Sbjct: 610 RALADIKADMEQAKPMDRLLCGDVGFGKTEVALRAAFKCCQDGKQVMVLCPTTILAQQHF 669 Query: 339 E-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 E F +++T + V +++ + A +R+ALE + G ++IGTH L + L L Sbjct: 670 ETFFERFTP-FDLCVRVLSRFISPAEQRRALEGFSAGDVDVLIGTHRLLSSDVNPANLGL 728 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI+DE+ RFGVQ + +L VL ++ATPIPRT+ + G D+S I P GR Sbjct: 729 VIIDEEQRFGVQHKEQLKTIREQVDVLTLSATPIPRTMQMAMSGVRDMSLILTPPPGR-- 786 Query: 458 IKTVIIPINRIDE--VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 K+VI+ + D + + ++ L+ + Y++ ++ + +ER S Sbjct: 787 -KSVIVHVGEWDADVISDAIRFELARSGQVYYVSNRV-----ATIDQAIERVRSAAPE-- 838 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + + + HG+MS E VM SF +L+ATT+IE GID + +IIE+A+ GLAQ Sbjct: 839 ARVGVAHGQMSAAQIEDVMLSFAEREIDVLVATTIIESGIDNPHTNTLIIEDAQRLGLAQ 898 Query: 576 LHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630 L+QL+GRVGRG + +++ PL+ + RL + ++ G IA +DL+ R Sbjct: 899 LYQLKGRVGRGRLQAYAYIMFPETQPLTDEARRRLEAIYEHQELGSGMRIAMKDLEIRGA 958 Query: 631 GEILGIKQSG 640 G ++G +Q G Sbjct: 959 GSLVGAEQHG 968 >gi|228956495|ref|ZP_04118292.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar pakistani str. T13001] gi|228803185|gb|EEM50006.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar pakistani str. T13001] Length = 1183 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I +I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 621 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 680 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 681 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 740 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 741 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 800 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 801 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 857 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 858 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQYDVLVSTTIIETGVDIP 908 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 909 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 968 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 969 LGSGFKIAMRDLSIRGAGNLLGAEQHG 995 >gi|42779132|ref|NP_976379.1| transcription-repair coupling factor [Bacillus cereus ATCC 10987] gi|206977924|ref|ZP_03238811.1| transcription-repair coupling factor [Bacillus cereus H3081.97] gi|217957629|ref|YP_002336171.1| transcription-repair coupling factor [Bacillus cereus AH187] gi|222093823|ref|YP_002527872.1| transcription-repair coupling factor [Bacillus cereus Q1] gi|229136900|ref|ZP_04265528.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST26] gi|42735047|gb|AAS38987.1| transcription-repair coupling factor [Bacillus cereus ATCC 10987] gi|206743830|gb|EDZ55250.1| transcription-repair coupling factor [Bacillus cereus H3081.97] gi|217067660|gb|ACJ81910.1| transcription-repair coupling factor [Bacillus cereus AH187] gi|221237870|gb|ACM10580.1| transcription-repair coupling factor [Bacillus cereus Q1] gi|228646565|gb|EEL02771.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST26] Length = 1176 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 215/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I++I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 614 QEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 850 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988 >gi|95930005|ref|ZP_01312745.1| transcription-repair coupling factor [Desulfuromonas acetoxidans DSM 684] gi|95133974|gb|EAT15633.1| transcription-repair coupling factor [Desulfuromonas acetoxidans DSM 684] Length = 1158 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 131/379 (34%), Positives = 214/379 (56%), Gaps = 17/379 (4%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 P+ T Q +AI+D+L+DM M R++ GDVG GKT VA+ A A Q ++ Sbjct: 614 FPYEETADQMAAIQDVLEDMQSGRPMDRLICGDVGYGKTEVAIRAAFKAALDSKQVAVVV 673 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P ILA+QHY + + VE+I+ A +++ L+ +A GQ ++IGTH L Q Sbjct: 674 PTTILARQHYATFLERFHGYPVHVEMISRFRSAADQKRVLKELAEGQVDVVIGTHRLLQR 733 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 + + L +V++DE+ RFGV + +L + +L ++ATPIPRTL + +G D+S I Sbjct: 734 DVHFKDLGMVVIDEEQRFGVSHKERLKKMRAQVAMLTLSATPIPRTLNMGMIGMRDLSII 793 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVER 506 P R I+T + R D+ + R ++ L G + Y++ +++ + ++ E Sbjct: 794 DTPPVDRLAIRTY---VTRFDDDLIRNAILRELQRGGQVYFVHNRVQ-----SIGAMAEF 845 Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 +L + IA+ HG+M++ + E VM F G +L+A+T+IE G+D+ A+ II+ Sbjct: 846 LATLVPE--AKIAVGHGQMAEKELEKVMLGFIEGETNVLVASTIIENGLDIPRANTIIVN 903 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIA 621 A+ FGL+QL+QLRGRVGR + LL L+K++ RL VL++ + GF +A Sbjct: 904 RADCFGLSQLYQLRGRVGRSKNRGYAYLLIPGEATLTKDARARLQVLQDLTELGAGFRVA 963 Query: 622 EEDLKQRKEGEILGIKQSG 640 DL+ R G++LG +Q+G Sbjct: 964 SHDLELRGAGDLLGGRQAG 982 >gi|324324043|gb|ADY19303.1| transcription-repair coupling factor [Bacillus thuringiensis serovar finitimus YBT-020] Length = 1176 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 215/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I++I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 614 QEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 850 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988 >gi|319778049|ref|YP_004134479.1| dead/deah box helicase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171768|gb|ADV15305.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 1129 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 153/435 (35%), Positives = 226/435 (51%), Gaps = 20/435 (4%) Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMS 289 D L + L MR EI P + + A K P++ T Q +AI+ +L D+S Sbjct: 552 DRLAKRLVGLAEMRSSQPAEIIKPSRADLARFAAKF----PYTETPDQAAAIRAVLDDLS 607 Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349 M R++ GDVG GKT VAL A AAA G Q ++AP +LA+QHYE + T Sbjct: 608 SGRTMNRLVCGDVGFGKTEVALRACAAAALCGKQVAVIAPTTVLARQHYETFSRRFAGTG 667 Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409 + V ++ + A + A E + GQ I++GT AL S+ + L L+++DE+HRFGV+ Sbjct: 668 LQVAHLSRMVGAAKAKAAKEGLRSGQVTIVVGTQALASRSVTFANLGLLVIDEEHRFGVK 727 Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469 +L L A H L M+ATPIPRTL G D+S + PA R+P++T++ + Sbjct: 728 LKLALRNMAPCLHTLSMSATPIPRTLQSALSGIQDVSVLNSPPAKRRPVRTILAAFDPA- 786 Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529 V L G +++++ P+IE + V ++ N L + HG M Sbjct: 787 SVRAALLREFHRGGQSFFVVPRIE-----DIGPVSDQLNRLVPEL--GVMTAHGEMKGRQ 839 Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589 + VM F +G +L++T +IE G+DV A+ II+ + FGLAQLHQLRGRVGRG Sbjct: 840 LDEVMVGFADGDGDILLSTDIIESGLDVPRANTIIVWRPDRFGLAQLHQLRGRVGRGAMQ 899 Query: 590 SSCILLYHP--PLSKNSYTRLS---VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644 ++ LL P L+ + RLS L G I++ DL R G++ G Q+G K Sbjct: 900 AAAFLLTEPGVELADGTRARLSTMLALDRLGSGLAISQRDLDLRGAGDLFGEDQAGHMKL 959 Query: 645 LIAQPELHDSLLEIA 659 + L++ LLE A Sbjct: 960 IGVG--LYEHLLERA 972 >gi|52145163|ref|YP_081665.1| transcription-repair coupling factor [Bacillus cereus E33L] gi|51978632|gb|AAU20182.1| transcription-repair coupling factor [Bacillus cereus E33L] Length = 1176 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 215/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I++I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 614 QEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 850 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988 >gi|268318293|ref|YP_003292012.1| transcription-repair coupling factor [Rhodothermus marinus DSM 4252] gi|262335827|gb|ACY49624.1| transcription-repair coupling factor [Rhodothermus marinus DSM 4252] Length = 1112 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 136/380 (35%), Positives = 206/380 (54%), Gaps = 21/380 (5%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T Q +A + + +DM Q M R++ GDVG GKT +A+ A AV+ G Q ++ P Sbjct: 554 YEDTPDQAAAAEAVKRDMEQPVPMDRLVCGDVGFGKTEIAIRAAFKAVQDGKQVAVLVPT 613 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 ILA QHYE + + +E+++ A +R L +A G+ IIIGTH L + Sbjct: 614 TILADQHYETFTRRLAPYPVRIEVLSRFRSPARQRAVLRDLAAGKVDIIIGTHRLLSKDV 673 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 Q+ L L+I+DE+ RFGV + +L Q L +TATPIPRTL +G D+S I+ Sbjct: 674 QFKDLGLLIIDEEQRFGVAAKERLRQLRVEVDTLTLTATPIPRTLQFALMGARDLSIIST 733 Query: 451 KPAGRKPIKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKE--SNFRSVVER 506 P R+PI T I+ DE + R ++ +S G + ++I +++ E + +++V Sbjct: 734 PPPNRQPIVT---EIHTFDETLIRDAIRYEISRGGQVFFIHNRVQSIYEMAARLQAIVPD 790 Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 IA+ HG+M + E VM F +L++T +IE G+D+ +A+ III Sbjct: 791 VR---------IAVAHGQMKPRELERVMHDFMARKYDVLVSTNIIESGLDIPNANTIIIN 841 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIA 621 +AE FGLA LHQLRGRVGR + + C LL L++ + RL ++ + GF IA Sbjct: 842 HAEQFGLADLHQLRGRVGRSDRKAFCYLLVPSIHGLTREARQRLQAIEEFSELGSGFSIA 901 Query: 622 EEDLKQRKEGEILGIKQSGM 641 DL R G +LG +QSG Sbjct: 902 MRDLDIRGAGNLLGAEQSGF 921 >gi|157690837|ref|YP_001485299.1| transcription-repair coupling factor [Bacillus pumilus SAFR-032] gi|157679595|gb|ABV60739.1| transcription-repair coupling factor [Bacillus pumilus SAFR-032] Length = 1177 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 136/380 (35%), Positives = 210/380 (55%), Gaps = 21/380 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +I +I QDM ++ M R+L GDVG GKT VA+ A A+ G Q ++ P Sbjct: 621 PYQETDDQIRSIHEIKQDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQVALLVP 680 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQH++ I Q+ + + ++ + + L+ + +G ++IGTH L Sbjct: 681 TTILAQQHFDTIMDRFQDYPVKIAQLSRFRTRKETTETLKGLKNGTIDMVIGTHRLLSKD 740 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG D+S I Sbjct: 741 IVYKDLGLLIIDEEQRFGVTHKEKIKQMKANIDVLTLTATPIPRTLHMSMLGVRDLSVIE 800 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 P R P++T ++ N + E IER L+ G + Y++ ++E E+K +V Sbjct: 801 TPPENRFPVQTYVVEYNGALVREAIER---ELARGGQVYFLYNRVEDIERKADEISMLVP 857 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + ++ HG+MS+ + ESVM +F G +L++TT+IE G+D+ + + +I+ Sbjct: 858 ---------DAKVSYAHGKMSENELESVMINFLEGESDVLVSTTIIETGVDIPNVNTLIV 908 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620 +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE GF I Sbjct: 909 HDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLSEVAEKRLQAIKEFTELGSGFKI 968 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL R G +LG +Q G Sbjct: 969 AMRDLTIRGAGNLLGAQQHG 988 >gi|170759697|ref|YP_001788879.1| transcription-repair coupling factor [Clostridium botulinum A3 str. Loch Maree] gi|169406686|gb|ACA55097.1| transcription-repair coupling factor [Clostridium botulinum A3 str. Loch Maree] Length = 1168 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 145/437 (33%), Positives = 232/437 (53%), Gaps = 35/437 (8%) Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EWT + + + + +E+ + L +R K G + + ++ P+ T Q Sbjct: 573 EWTKTKNKVKKSIEEIAEDLVKLYAIRATLK---GYKYSDDTVWQKQFEEEFPYEETPDQ 629 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 AI+DI +DM M R+L GDVG GKT VA+ A AV G Q + P ILAQQH Sbjct: 630 LLAIEDIKRDMESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVAFLVPTTILAQQH 689 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y K+ + I V++I+ + ++ ++ I G I+IGTH + Q I++ L L Sbjct: 690 YNNFKQRFSDFPITVDVISRFRTLSEQKATIKSIKEGNVDILIGTHRILQKDIKFKDLGL 749 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +I+DE+ RFGV+ + K+ VL ++ATPIPRTL ++ +G DIS I P R P Sbjct: 750 LIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLVGVRDISVIETPPEERYP 809 Query: 458 IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515 ++T ++ N D++I + + +S G + Y++ ++E S+HE + Sbjct: 810 VQTYVVEYN--DQLIRDSILREISRGGQIYFVYNRVE---------------SIHEMASY 852 Query: 516 -------SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 + I HG+M + + E+V+ F +LIATT+IE G+D+ + + +II +A Sbjct: 853 ISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDA 912 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623 + GL+QL+QLRGRVGR ++ C L Y L++ + RL +K+ TE GF IA + Sbjct: 913 DKMGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALK 972 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R G ++G Q G Sbjct: 973 DLEIRGAGNMMGSAQHG 989 >gi|85708435|ref|ZP_01039501.1| transcription-repair coupling factor [Erythrobacter sp. NAP1] gi|85689969|gb|EAQ29972.1| transcription-repair coupling factor [Erythrobacter sp. NAP1] Length = 1163 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 147/435 (33%), Positives = 236/435 (54%), Gaps = 26/435 (5%) Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 +AG++ + + KK E + + P+ T Q++AI D+L+D+ Sbjct: 570 IAGELMKVAAERALKK--APRFEAEDASFNQFVDRFPWEETDDQDAAIADVLRDLESGKP 627 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R++ GDVG GKT VAL A A +G Q ++AP +LA+QHYE K+ + + + Sbjct: 628 MDRLVCGDVGFGKTEVALRAAFVAAMSGKQVAVVAPTTLLARQHYENFKQRFEGFPLKLG 687 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++ + + E +A+G +++GTHA+ S ++ L LVIVDE+ RFGV + K Sbjct: 688 RLSRLVSSKEAAETREGLANGTVDLVVGTHAILSKSTEFKDLGLVIVDEEQRFGVTHKEK 747 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 L Q H+L +TATPIPRTL + G ++S I P R ++T ++ D+++ Sbjct: 748 LKQLRADVHMLTLTATPIPRTLQMAMTGLRELSTIQTPPVDRLAVRTYVM---EWDDMVM 804 Query: 474 RLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI-IHGRMSDID 529 R + +L E G +++ + P+I + + VE + LHE+ AI HG+M + Sbjct: 805 R-EALLREHHRGGQSFIVVPRISDMAD------VEEW--LHENVPEVKAISAHGQMGAAE 855 Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589 E M +F + ++L++TT++E G+D+ A+ III A+ FGLAQL+QLRGRVGR + Sbjct: 856 IEQRMSAFYDRKYEVLLSTTIVESGLDLPSANTIIIHRADRFGLAQLYQLRGRVGRSKLR 915 Query: 590 SSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK- 643 + L Y LS+ + RL VL + + GF +A DL R G +LG +QSG + Sbjct: 916 AYAYLTYEKDVQLSEVAEKRLKVLGDLDSLGAGFQLASHDLDIRGAGNLLGDEQSGHIRE 975 Query: 644 --FLIAQPELHDSLL 656 F + Q L D++L Sbjct: 976 VGFELYQSMLEDAIL 990 >gi|254293942|ref|YP_003059965.1| transcription-repair coupling factor [Hirschia baltica ATCC 49814] gi|254042473|gb|ACT59268.1| transcription-repair coupling factor [Hirschia baltica ATCC 49814] Length = 1152 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 138/397 (34%), Positives = 217/397 (54%), Gaps = 17/397 (4%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 P+ T Q +AI+D L D++ M R++ GDVG GKT VAL A +G Q I+A Sbjct: 602 FPYEETDDQLNAIEDCLSDLASGKPMDRLVCGDVGFGKTEVALRTAFVAAMSGMQVAIIA 661 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LA+QHY K+ + I V ++ + + E +A G A +++GTHA+ Sbjct: 662 PTTLLARQHYRTFKERFEGWPIKVRQLSRFVSAKEQTTTREMLASGDADVVVGTHAVISK 721 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 +++ +L L++VDE+ RFGV+ + ++ + HVL ++ATPIPRTL L G D+S I Sbjct: 722 QVKFKRLGLLVVDEEQRFGVKHKERMKEMKADIHVLTLSATPIPRTLQLALTGIRDLSII 781 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R ++T + + + V E L G ++Y+I P++ + +ERF Sbjct: 782 ATPPIDRLSVRTYTVEFDPV-TVREALLRERYRGGQSYFIAPRVSD------LPFLERF- 833 Query: 509 SLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 L E S HG+M+ E +M+ F +G +L+ATT++E G+D+ A+ I+I Sbjct: 834 -LREQVPEVSFLSAHGQMASGQLEDIMNDFYDGKADVLLATTIVESGLDIPRANTIVIHR 892 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622 A+ FGLAQL+QLRGRVGR + + + LS+ + RL VL++ + GF++A Sbjct: 893 ADKFGLAQLYQLRGRVGRSKLRAYAYMTTKKDMVLSETAEKRLKVLQSLDSLGAGFMLAS 952 Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 DL R G +LG QSG + + EL+ +LE A Sbjct: 953 HDLDMRGGGNLLGDAQSGHVREVGV--ELYQQMLEDA 987 >gi|330999600|ref|ZP_08323311.1| transcription-repair coupling factor [Parasutterella excrementihominis YIT 11859] gi|329574453|gb|EGG56023.1| transcription-repair coupling factor [Parasutterella excrementihominis YIT 11859] Length = 1157 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 136/377 (36%), Positives = 205/377 (54%), Gaps = 17/377 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T+ Q +AI + +DM M R++ GDVG GKT VAL A AV G Q ++ P Sbjct: 614 FEETEDQLAAINAVYRDMISDKPMDRLVCGDVGFGKTEVALRAAFMAVMGGKQVAVLCPT 673 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA+QH + + N + + ++ ++E I +G I++GTH L D + Sbjct: 674 TLLAEQHAQTFRDRFANWPVRIAELSRFRSSKEVNGSIEGIKNGTIDIVVGTHKLLSDKV 733 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 Q+ L LV++DE+HRFGV+Q+ +L + +L +TATPIPRTL ++ G D S I Sbjct: 734 QFKDLGLVVIDEEHRFGVRQKEQLKSLRSEVDILTLTATPIPRTLSMSLEGIRDFSVIAT 793 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R IKT + R + + R V+ L G + Y++ ++E + + R + Sbjct: 794 APQKRLAIKTF---VQRESDSLIREAVLRELKRGGQVYFLHNEVETIENARM-----RLD 845 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 L + I + HG+M++ + E VM F +L+ TT+IE GID+ +A+ II+ A Sbjct: 846 QLLPE--ARIGVAHGQMNERELERVMRDFYAQRTNVLLCTTIIETGIDIPNANTIIMHRA 903 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623 + FGLAQLHQLRGRVGR + LL ++KN+ RL +K E+ GF +A Sbjct: 904 DKFGLAQLHQLRGRVGRSHHQAYAYLLTPGEGAMTKNAEKRLEAIKEMEELGSGFYLAMH 963 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R GE+LG QSG Sbjct: 964 DLEIRGAGEVLGEHQSG 980 >gi|229074115|ref|ZP_04207162.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-18] gi|229094775|ref|ZP_04225781.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-29] gi|229113728|ref|ZP_04243164.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-3] gi|228669725|gb|EEL25131.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-3] gi|228688643|gb|EEL42515.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-29] gi|228709009|gb|EEL61135.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-18] Length = 1176 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 138/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T Q +I++I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 614 QEFESSFPYQETDDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + L+ + G I+IGT Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETLKGLKDGTVDIVIGT 733 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKAD 850 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTE 961 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988 >gi|294677347|ref|YP_003577962.1| transcription-repair coupling factor [Rhodobacter capsulatus SB 1003] gi|294476167|gb|ADE85555.1| transcription-repair coupling factor [Rhodobacter capsulatus SB 1003] Length = 1148 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 138/398 (34%), Positives = 231/398 (58%), Gaps = 25/398 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P++ T Q +AI+D++ D++ M R++ GDVG GKT VA+ A A +G Q ++AP Sbjct: 589 PYTETDDQMAAIEDVVTDLAAGRPMDRLVVGDVGFGKTEVAMRAAFVAASSGMQVAVIAP 648 Query: 330 IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 +LA+QH + FI+++ + T + V+ ++ + + +A G I+IGTHA+ Sbjct: 649 TTLLARQHAKTFIERF-RGTPLTVKPLSRFVSAKEANATRDGLADGTVDIVIGTHAVLAK 707 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 +++ L L+I+DE+ FGVQ + +L + + HVL +TATPIPRTL L+ G D+S I Sbjct: 708 GVKFRNLGLLIIDEEQHFGVQHKERLKEMRSEIHVLTLTATPIPRTLQLSLTGVRDLSII 767 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505 P R I+T ++ D V R + +L E G +++++ P+I + E VE Sbjct: 768 GTPPVDRLAIRTY---VSEFDTVTIR-EALLREHYRGGQSFYVVPRISDLAE------VE 817 Query: 506 RFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 F L H S + HG+M+ + + M++F +G +L+ATT++E G+D+ A+ ++ Sbjct: 818 DF--LRSHVPEVSFIVAHGQMAAGELDDRMNAFYDGKHDVLLATTIVESGLDIPTANTMV 875 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFL 619 + A+ FGL+QL+Q+RGRVGR + + C L P PL+ + RL +L + ++ GF Sbjct: 876 VHRADMFGLSQLYQIRGRVGRSKLRAYCYLTTKPRLPLTPQATKRLRLLGSLDNLGAGFS 935 Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 +A +DL R G +LG +QSG K + EL+ ++LE Sbjct: 936 LASQDLDLRGAGNLLGEEQSGHIKEV--GYELYQAMLE 971 >gi|225166092|ref|ZP_03727826.1| transcription-repair coupling factor [Opitutaceae bacterium TAV2] gi|224799663|gb|EEG18158.1| transcription-repair coupling factor [Opitutaceae bacterium TAV2] Length = 833 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 143/412 (34%), Positives = 216/412 (52%), Gaps = 19/412 (4%) Query: 238 IALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295 +A L+R Q +E G + + Q+ PF+ T Q AI + DM + M Sbjct: 217 LAAELLRIQAAREAQPGHAFDPDNDWQQEFEAAFPFTETPDQLRAITETKADMERPRPMD 276 Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 R++ GDVG GKT VA+ A AV++G Q ++ P +LAQQH ++ ++VE++ Sbjct: 277 RLICGDVGFGKTEVAIRAAFKAVQSGRQVALLVPTTVLAQQHLNTFRERMAGYPLVVEMV 336 Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415 + + + L A GQ I++GTH + + + L LVI+DE+ RFGVQ + +L Sbjct: 337 SRFRTRGEITRILAATAAGQVDILVGTHRILNKDVVFRDLGLVIIDEEQRFGVQHKERLK 396 Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE--VIE 473 VL M+ATPIPRTL + G D+S I P R PI+T+ + DE V + Sbjct: 397 AMRATVDVLSMSATPIPRTLYMAMTGARDMSVIETPPTNRHPIQTI---VKTYDEKLVTD 453 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 ++ LS G + +++ +++ V R L IA HG+MS+ E + Sbjct: 454 AIRAELSRGGQVFYLHNRVQ-----TIDLVAARLAQLLPDV--KIATGHGQMSEHALERM 506 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M F G ++L+ TT+IE G+D+ + + IIIE A+ FGL+QL+QLRGRVGR + + Sbjct: 507 MTEFVAGDYQVLVCTTIIETGLDIPNCNTIIIEGADRFGLSQLYQLRGRVGRFKHQAYAY 566 Query: 594 LLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 LL H L + RL+ L+ GF IA DL+ R G +LG +QSG Sbjct: 567 LLLHRHTRLMDVARERLNALRTHNQLGAGFRIAMRDLELRGAGNLLGPQQSG 618 >gi|304319738|ref|YP_003853381.1| transcription-repair coupling factor [Parvularcula bermudensis HTCC2503] gi|303298641|gb|ADM08240.1| transcription-repair coupling factor [Parvularcula bermudensis HTCC2503] Length = 1163 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 141/400 (35%), Positives = 225/400 (56%), Gaps = 23/400 (5%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 P++ T Q +AI D++ D+S+ M R++ GDVG GKT VAL A A +G Q ++A Sbjct: 613 FPYTETDDQLNAIDDVISDLSRGRPMDRLVCGDVGFGKTEVALRAAFVAAMSGRQVAVIA 672 Query: 329 PIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +L +QH+ F++++ Q + + ++ + E I +G I+IGTHAL Sbjct: 673 PTTLLVRQHFRGFVERF-QGFPVKIRQLSRFVSAKEASATREGIKNGDVDIVIGTHALLS 731 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + + L L+I+DE+ FGV+ + +L + HVL +TATPIPRTL L+ G D+S Sbjct: 732 KHVAFRDLGLLIIDEEQHFGVKHKERLKEFRGDTHVLTLTATPIPRTLQLSMAGIRDLSL 791 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVV 504 I P R ++T I P D V+ R + +L E G +++++ P++ S+ +V Sbjct: 792 IATPPVDRLAVRTTIGP---FDPVVAR-ETLLREHYRGGQSFYVVPRL-----SDIDTVA 842 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + H+ I HG+MS + E VM+ F +G +L+ATT+IE GIDV A+ ++ Sbjct: 843 DFLR--HQVPEIKFEIGHGQMSATELEDVMNGFYDGKFDVLLATTIIESGIDVPTANTLV 900 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFL 619 + A+ FGLAQL+Q+RGRVGR ++ + L P +++ + RL VL++ + GF Sbjct: 901 VHRADMFGLAQLYQIRGRVGRSKQRAYAYLTTSPRKKMTEGAEKRLKVLQSLDTLGAGFT 960 Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 +A DL R G +LG +QSG K + EL+ +LE A Sbjct: 961 LASHDLDIRGAGNLLGEEQSGNVKDVGV--ELYQHMLEEA 998 >gi|270290199|ref|ZP_06196425.1| transcription-repair coupling factor [Pediococcus acidilactici 7_4] gi|270281736|gb|EFA27568.1| transcription-repair coupling factor [Pediococcus acidilactici 7_4] Length = 1165 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/429 (31%), Positives = 234/429 (54%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W + + E +A + L +++ +K P + + ++ + + P++ T Q Sbjct: 567 DWAKTKQHVASKIEDIADDLIELYAKREAEKGFAFPPDDDLQL--QFENDFPYTETPDQL 624 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +IK++ +DM + M R+L GDVG GKT VAL A A+E G Q I+ P ILAQQH+ Sbjct: 625 RSIKEVKEDMEKPRPMDRLLVGDVGYGKTEVALRAAFKAIEGGKQVAILVPTTILAQQHF 684 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + I +++ A ++AL + G I++GTH L + + L L+ Sbjct: 685 DTMNDRFGDYPITTAMLSRFQTNAQIKEALAGLKDGTIDIVVGTHRLLSKDVHFKDLGLL 744 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 ++DE+ RFGV+ + ++ + VL +TATPIPRTL ++ +G D+S I P R PI Sbjct: 745 VIDEEQRFGVKHKERIKALRSQVDVLTLTATPIPRTLNMSMIGVRDLSVIETPPTNRYPI 804 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T ++ N I E I ++ + +G + +++ +++ + VV + +L + Sbjct: 805 QTYVVEENAGIIREGI--MREIRRDG-QVFFLHNRVQ-----DIEKVVAQIEALVPE--A 854 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 +A IHG+M++ E ++ F G +L+ TT+IE GID+ +A+ + +ENA+H GL+QL Sbjct: 855 RVAYIHGQMTEKQLEDILFDFIEGEYDVLVTTTIIETGIDIPNANTLFVENADHMGLSQL 914 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGR+GR ++ LY L++ RL +K+ TE GF IA DL R G Sbjct: 915 YQLRGRIGRSSRVAYAYFLYQKDRVLTELGEKRLEAIKDFTELGSGFKIAMRDLSIRGAG 974 Query: 632 EILGIKQSG 640 +LG +Q G Sbjct: 975 NLLGKQQHG 983 >gi|325125148|gb|ADY84478.1| Transcriptional repair coupling factor [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 1163 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 143/435 (32%), Positives = 227/435 (52%), Gaps = 24/435 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW + A E +A + L +++ +K G + +G P+ PT Q Sbjct: 557 EWAKTKKRVAARVEDIADDLIELYAKREAEK--GFAFSPDGSDQAAFEAAFPYEPTPDQL 614 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 A +I DM + M R+L GDVG GKT VA+ A A+ G Q + P ILAQQHY Sbjct: 615 RATAEIKADMEKAKPMDRLLVGDVGFGKTEVAMRAAFKAICDGKQVAFLVPTTILAQQHY 674 Query: 339 EFIKKYTQNTQII---VEIITGN--MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 + IK + + VEI + + QA +K + + G +++GTH + +Q+ Sbjct: 675 QTIKDRFKGFPVKGFPVEIASFSRFQGQAESKKIVAGLKDGSIDLVVGTHRILSKDVQFK 734 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L L+I+DE+ RFGV + KL Q T VL +TATPIPRTL ++ +G D+S + P Sbjct: 735 DLGLLIIDEEQRFGVAHKEKLKQLKTNIDVLTLTATPIPRTLHMSMIGIRDLSVMETPPQ 794 Query: 454 GRKPIKTVIIPI--NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511 R PI+T ++ + E +R + G + +++ ++ + +E+ V R L Sbjct: 795 NRYPIQTYVLEQLPGTVKEACQR---EMQRGGQVFYLHNRVGDIEET-----VARLEQLL 846 Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 + IA HG+MS+ E ++ F + +L+ TT+IE GID+ + + +IIE+A+H+ Sbjct: 847 PE--ARIAYAHGQMSENQLEDILSRFLDREFDILVTTTIIETGIDMPNVNTMIIEDADHY 904 Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLK 626 GL+QL+QLRGR+GR ++ LY P L++ RL +++ + GF IA DL Sbjct: 905 GLSQLYQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGAGFKIAMRDLS 964 Query: 627 QRKEGEILGIKQSGM 641 R G +LG +Q G Sbjct: 965 IRGAGNMLGAQQHGF 979 >gi|300868792|ref|ZP_07113400.1| Transcription-repair-coupling factor [Oscillatoria sp. PCC 6506] gi|300333202|emb|CBN58592.1| Transcription-repair-coupling factor [Oscillatoria sp. PCC 6506] Length = 1226 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 134/410 (32%), Positives = 226/410 (55%), Gaps = 17/410 (4%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 + LL + + +++G + Q++ + P+ PT Q A +D+ +DM M R+ Sbjct: 645 VDLLNLYAKRAQQVGFAFPPDMPWQQELEDSFPYQPTPDQLKATQDVKRDMEGDRPMDRL 704 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 + GDVG GKT VA+ A+ A+ AG Q ++AP IL QQHY +K+ I V ++ Sbjct: 705 VCGDVGFGKTEVAIRAIFKAITAGKQVAMLAPTTILTQQHYHTLKERFAPYPIEVGLLNR 764 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 + RR+ R+A G+ +++GT ++ +++ L L++VDE+ RFGV+Q+ + Sbjct: 765 FRTETERRELQRRLASGELDVVVGTQSILSKGVKFKDLGLMVVDEEQRFGVKQKEAIKAL 824 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LK 476 T VL +TATPIPRTL ++ G ++S I P R+PI+T + + EV+ ++ Sbjct: 825 KTMVDVLTLTATPIPRTLYMSLSGIREMSIIATPPPTRRPIQTHLAAYD--PEVVRTAIR 882 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 L G + +++ P+IE + + + + IAI HG+M + E++M + Sbjct: 883 QELDRGGQVFYVVPRIE-----GIDDLAAQLGVMVP--GAKIAIAHGQMDASELEAIMLA 935 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F +L+ TT+IE G+D+ + I+IE+A+ FGLAQL+QLRGRVGR + + L+ Sbjct: 936 FSAADFDILVCTTIIESGLDIPRVNTILIEDAQRFGLAQLYQLRGRVGRA-GVQAHAWLF 994 Query: 597 HPP---LSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSG 640 +P L+ + RL ++ G+ +A DL+ R G+ILG +QSG Sbjct: 995 YPNQNRLTDEARQRLRAIQEFAQLGSGYQLAIRDLEIRGAGDILGAEQSG 1044 >gi|229142859|ref|ZP_04271302.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST24] gi|228640622|gb|EEK97009.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST24] Length = 1183 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I +I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 621 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 680 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 681 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 740 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 741 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 800 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 801 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 857 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 858 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 908 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 909 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 968 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 969 LGSGFKIAMRDLSIRGAGNLLGAEQHG 995 >gi|281420665|ref|ZP_06251664.1| transcription-repair coupling factor [Prevotella copri DSM 18205] gi|281405438|gb|EFB36118.1| transcription-repair coupling factor [Prevotella copri DSM 18205] Length = 1137 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 128/408 (31%), Positives = 219/408 (53%), Gaps = 15/408 (3%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + Q ++E G + + + + + + T Q A +++ +DM M R++ Sbjct: 537 LIKLYAQRRREKGFAFSADNYLQHTLEASFLYEDTPDQNKATQEVKKDMESGRPMDRLVC 596 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A A Q ++ P +LA QHY+ KK + + V+ ++ Sbjct: 597 GDVGFGKTEVAIRAAFKAACDSKQVAVLVPTTVLAFQHYQTFKKRLEGMPVRVDYLSRAR 656 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R+ L+ + G+ I+IGTH L +++++ L L+++DE+ +FGV + KL Q Sbjct: 657 TTKETREVLDALKEGKIDILIGTHKLISKTVKWHDLGLLVIDEEQKFGVSTKEKLRQLKV 716 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 L M+ATPIPRTL + +G D+S + P R PI T ++ + + + + + + Sbjct: 717 NVDTLTMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPIHTELVTFSS-EVICDAINFEM 775 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFK 538 S + Y++C +I + E + ++E+ H +AI HG+M D E ++ F Sbjct: 776 SRNGQVYFVCDRISKLPE--LKMLIEK------HIPDCRVAIGHGQMKPEDLEKIIMGFI 827 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 N +L++TT++E GID+ +A+ II+ +A HFGL+ LHQ+RGRVGR + + C L+ P Sbjct: 828 NYDYDVLLSTTIVENGIDISNANTIIVSDAHHFGLSDLHQMRGRVGRSNKKAFCYLMAPP 887 Query: 599 --PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 L+ + RL L+ + GF +A +DL R G +LG +QSG Sbjct: 888 KSALTPEARRRLEALETFSELGSGFNLAMQDLDIRGAGNLLGSEQSGF 935 >gi|283779708|ref|YP_003370463.1| transcription-repair coupling factor [Pirellula staleyi DSM 6068] gi|283438161|gb|ADB16603.1| transcription-repair coupling factor [Pirellula staleyi DSM 6068] Length = 1087 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 139/397 (35%), Positives = 220/397 (55%), Gaps = 19/397 (4%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 GI + + + ++ + PF T Q ++I I DM + M R+L GDVG GKT VA+ Sbjct: 532 GIAFSADSEWQKEFDNSFPFQETVDQLTSIASIKADMQRARPMDRLLCGDVGFGKTEVAM 591 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHY-EFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370 A AV+ G Q ++ P ILA+QHY FI++ + I ++ Q R+AL+ Sbjct: 592 RAAFKAVDNGYQVAVLVPTTILAEQHYRSFIERMAEFPCDIAKLSRFCTSQ-EEREALKG 650 Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430 I G+ I++GTH L + ++ L LVI+DE+ RFGV + +L VL ++ATP Sbjct: 651 IKSGKVDIVVGTHRLASQDVDFHNLGLVIIDEEQRFGVDVKERLKALKATVDVLTLSATP 710 Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWI 488 IPRTL ++ +G DIS + P R P++T + R + + R V+ L+ G + Y++ Sbjct: 711 IPRTLHMSLVGVRDISNLESPPEDRVPVET---SVKRWNNDLIRTAVLRELNRGGQIYFV 767 Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548 ++ ++ + R N + +S+ I HG+M++ + E VM F G LL+AT Sbjct: 768 HNRV-----NDIEIIARRLNQIVPE--ASLRIGHGQMNETELEQVMVDFVAGKFDLLLAT 820 Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYT 606 T++E G+D+ +A+ I I AE +GLA LHQLRGRVGR + + C LL + ++ N+ Sbjct: 821 TIVESGLDIPNANTIFINEAERYGLADLHQLRGRVGRYKNRAHCYLLIDSNKSITPNAAR 880 Query: 607 RLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 RL ++ + GF I+ DL+ R G +LG +QSG Sbjct: 881 RLRAIEEFSEMGAGFQISMRDLEIRGAGNLLGTQQSG 917 >gi|227499516|ref|ZP_03929623.1| transcription-repair coupling factor [Anaerococcus tetradius ATCC 35098] gi|227218395|gb|EEI83646.1| transcription-repair coupling factor [Anaerococcus tetradius ATCC 35098] Length = 1170 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 143/429 (33%), Positives = 230/429 (53%), Gaps = 21/429 (4%) Query: 220 W-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 W + AR + A DE+ + L R + K G + + + + P+ T SQ Sbjct: 576 WQKAKARAKRAVDEIADDLVELYAKRSKIK---GHAFSSDTPWQSEFENSFPYEETYSQI 632 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I +I DM M R+L GDVG GKT VA+ A A+ G Q + P ILA QHY Sbjct: 633 RSIDEIKNDMESDKPMDRLLCGDVGFGKTEVAIRAAFKAIMDGFQVAFLVPTTILANQHY 692 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E IKK + + VE+++ P+A ++ + G+ +I+GTH L + Y L L+ Sbjct: 693 ETIKKRFEKFPVHVEVLSRFNPKAKNNLIVKELKAGKVDLIVGTHRLLSKDVGYKNLGLL 752 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + KL + ++ VL ++ATPIPRTL ++ G D+S + E P R P+ Sbjct: 753 IIDEEQRFGVKHKEKLKELKSSLDVLTLSATPIPRTLQMSLSGIRDLSTLDEAPEERMPV 812 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 + +I + I + IER L+ + Y++ +I ++ + ++ L + Sbjct: 813 NSYVIEYDSGIIKQAIER---ELNRNGQVYFVYNRI-----NDIEILYKQIQDLVPE--A 862 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 +I+IIHGR+S E +M F +G +L++TT+IE G+D+ + + +I+ +A+ GL QL Sbjct: 863 NISIIHGRISPKQIEEIMLDFIDGKIDILLSTTIIETGMDIANVNTMIVYDADTMGLGQL 922 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 +QL+GR+GR S Y LS+ S RL +++ D G+ IA +DL+ R G Sbjct: 923 YQLKGRIGRSNRSSYAYFTYRTGKVLSEISEKRLKSIRDFSDFGSGYKIAMKDLELRGAG 982 Query: 632 EILGIKQSG 640 +LG QSG Sbjct: 983 NLLGESQSG 991 >gi|228919004|ref|ZP_04082384.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840653|gb|EEM85914.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 1176 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I +I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 614 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 850 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988 >gi|304385533|ref|ZP_07367877.1| transcription-repair coupling factor [Pediococcus acidilactici DSM 20284] gi|304328037|gb|EFL95259.1| transcription-repair coupling factor [Pediococcus acidilactici DSM 20284] Length = 1165 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/429 (31%), Positives = 234/429 (54%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W + + E +A + L +++ +K P + + ++ + + P++ T Q Sbjct: 567 DWAKTKQHVASKIEDIADDLIELYAKREAEKGFAFPPDDDLQL--QFENDFPYTETPDQL 624 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +IK++ +DM + M R+L GDVG GKT VAL A A+E G Q I+ P ILAQQH+ Sbjct: 625 RSIKEVKEDMEKPRPMDRLLVGDVGYGKTEVALRAAFKAIEGGKQVAILVPTTILAQQHF 684 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + I +++ A ++AL + G I++GTH L + + L L+ Sbjct: 685 DTMNDRFGDYPITTAMLSRFQTNAQIKEALAGLEDGTIDIVVGTHRLLSKDVHFKDLGLL 744 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 ++DE+ RFGV+ + ++ + VL +TATPIPRTL ++ +G D+S I P R PI Sbjct: 745 VIDEEQRFGVKHKERIKALRSQVDVLTLTATPIPRTLNMSMIGVRDLSVIETPPTNRYPI 804 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T ++ N I E I ++ + +G + +++ +++ + VV + +L + Sbjct: 805 QTYVVEENAGIIREGI--MREIRRDG-QVFFLHNRVQ-----DIEKVVAQIEALVPE--A 854 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 +A IHG+M++ E ++ F G +L+ TT+IE GID+ +A+ + +ENA+H GL+QL Sbjct: 855 RVAYIHGQMTEKQLEDILFDFIEGEYDVLVTTTIIETGIDIPNANTLFVENADHMGLSQL 914 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGR+GR ++ LY L++ RL +K+ TE GF IA DL R G Sbjct: 915 YQLRGRIGRSSRVAYAYFLYQKDRVLTELGEKRLEAIKDFTELGSGFKIAMRDLSIRGAG 974 Query: 632 EILGIKQSG 640 +LG +Q G Sbjct: 975 NLLGKQQHG 983 >gi|257893212|ref|ZP_05672865.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,408] gi|257829591|gb|EEV56198.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,408] Length = 272 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 103/240 (42%), Positives = 168/240 (70%), Gaps = 3/240 (1%) Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485 MTATPIPRTL +T+ G++D+S I E PAGR PI+T + ++D V++ + L+ G + Sbjct: 1 MTATPIPRTLAITAYGEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTRKELARGHQM 60 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y ICP IEE + + ++ VE + L E F + ++HG+M + +KE +M++FK+ + Sbjct: 61 YVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAFKDNQMQ 120 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 +L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P ++ Sbjct: 121 ILVSTTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVANPK-NEL 179 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663 R+ ++ T +GF+++E+DL+ R GE+ G +QSG+P+F IA ++LE+AR++A Sbjct: 180 GVERMKIMTETTNGFVLSEKDLELRGPGEVFGFRQSGLPQFAIADLVTDGNVLEVAREEA 239 >gi|52078550|ref|YP_077341.1| transcription-repair coupling factor [Bacillus licheniformis ATCC 14580] gi|52783912|ref|YP_089741.1| hypothetical protein BLi00068 [Bacillus licheniformis ATCC 14580] gi|52001761|gb|AAU21703.1| transcription-repair coupling factor [Bacillus licheniformis ATCC 14580] gi|52346414|gb|AAU39048.1| Mfd [Bacillus licheniformis ATCC 14580] Length = 1177 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 135/380 (35%), Positives = 212/380 (55%), Gaps = 21/380 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q +I +I +DM ++ M R+L GDVG GKT VA+ A A+ G Q I+ P Sbjct: 621 PYQETEDQLRSIHEIKRDMEKERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQVAILVP 680 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHYE I + Q+ I + +++ + + ++ + +G I+IGTH L Sbjct: 681 TTILAQQHYETILERFQDYPINIGLLSRFRTRKEANETIKGLKNGTVDIVIGTHRLLSKD 740 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + Y L L+I+DE+ RFGV + K+ + VL +TATPIPRTL ++ LG D+S I Sbjct: 741 VVYKDLGLLIIDEEQRFGVTHKEKIKRIKANVDVLTLTATPIPRTLHMSMLGVRDLSVIE 800 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 P R P++T ++ N + E IER L+ G + Y++ ++E E+K +V Sbjct: 801 TPPENRFPVQTYVVEYNGALVREAIER---ELARGGQVYFLYNRVEDIERKAEEISMLVP 857 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + + HG+M++ + ESVM +F G +L++TT+IE G+D+ + + +I+ Sbjct: 858 ---------DAKVTYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIV 908 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620 +A+ GL+QL+QLRGRVGR ++ Y L++ + RL +K TE GF I Sbjct: 909 FDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFTELGSGFKI 968 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL R G +LG +Q G Sbjct: 969 AMRDLTIRGAGNLLGAQQHG 988 >gi|319648579|ref|ZP_08002793.1| mfd protein [Bacillus sp. BT1B_CT2] gi|317389346|gb|EFV70159.1| mfd protein [Bacillus sp. BT1B_CT2] Length = 1177 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 135/380 (35%), Positives = 212/380 (55%), Gaps = 21/380 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q +I +I +DM ++ M R+L GDVG GKT VA+ A A+ G Q I+ P Sbjct: 621 PYQETEDQLRSIHEIKRDMEKERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQVAILVP 680 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHYE I + Q+ I + +++ + + ++ + +G I+IGTH L Sbjct: 681 TTILAQQHYETILERFQDYPINIGLLSRFRTRKEANETIKGLKNGTVDIVIGTHRLLSKD 740 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + Y L L+I+DE+ RFGV + K+ + VL +TATPIPRTL ++ LG D+S I Sbjct: 741 VVYKDLGLLIIDEEQRFGVTHKEKIKRIKANVDVLTLTATPIPRTLHMSMLGVRDLSVIE 800 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 P R P++T ++ N + E IER L+ G + Y++ ++E E+K +V Sbjct: 801 TPPENRFPVQTYVVEYNGALVREAIER---ELARGGQVYFLYNRVEDIERKAEEISMLVP 857 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + + HG+M++ + ESVM +F G +L++TT+IE G+D+ + + +I+ Sbjct: 858 ---------DAKVTYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIV 908 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620 +A+ GL+QL+QLRGRVGR ++ Y L++ + RL +K TE GF I Sbjct: 909 FDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFTELGSGFKI 968 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL R G +LG +Q G Sbjct: 969 AMRDLTIRGAGNLLGAQQHG 988 >gi|229067818|ref|ZP_04201136.1| Transcription-repair-coupling factor [Bacillus cereus F65185] gi|228715302|gb|EEL67160.1| Transcription-repair-coupling factor [Bacillus cereus F65185] Length = 1176 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I +I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 614 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 850 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988 >gi|229077333|ref|ZP_04210009.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-2] gi|228705971|gb|EEL58283.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-2] Length = 968 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I +I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 406 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 465 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 466 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 525 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 526 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 585 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 586 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 642 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 643 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 693 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 694 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 753 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 754 LGSGFKIAMRDLSIRGAGNLLGAEQHG 780 >gi|229100846|ref|ZP_04231656.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-28] gi|228682572|gb|EEL36639.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-28] Length = 621 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 138/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T Q +I++I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 59 QEFESSFPYQETDDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 118 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + L+ + G I+IGT Sbjct: 119 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETLKGLKDGTVDIVIGT 178 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 179 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 238 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 239 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKAD 295 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 296 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 346 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 347 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTE 406 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 407 LGSGFKIAMRDLSIRGAGNLLGAEQHG 433 >gi|154492199|ref|ZP_02031825.1| hypothetical protein PARMER_01833 [Parabacteroides merdae ATCC 43184] gi|154087424|gb|EDN86469.1| hypothetical protein PARMER_01833 [Parabacteroides merdae ATCC 43184] Length = 1167 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 142/408 (34%), Positives = 217/408 (53%), Gaps = 15/408 (3%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+L+ + K+E G + + + ++ + + T Q A D+ DM M R++ Sbjct: 571 LILLYSKRKQEKGFAYSPDSFMQHELEASFIYEDTPDQMKATADVKADMENDRPMDRLIC 630 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LA QHY+ + ++ +E I+ Sbjct: 631 GDVGFGKTEVAIRAAFKAVSDNKQVAVLVPTTVLAFQHYQTFSERLKDFPCRIEYISRAR 690 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 R+ L+ + G +IIIGTH + + + L L+I+DE+ +FGV + KL Q Sbjct: 691 TAKEIRETLKDLKEGNINIIIGTHRIVGKDVTFKDLGLLIIDEEQKFGVSVKEKLRQLKA 750 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 L MTATPIPRTL + +G D+S IT P R P++T + N D + E + + Sbjct: 751 NVDTLTMTATPIPRTLQFSLMGARDLSSITTPPPNRYPVQTEVERFNP-DIIREAINFEM 809 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 S + ++I +I+ E ++V+R E + IA+ HG+M E ++ F N Sbjct: 810 SRNGQVFFINNRIQNIYE--MEALVKR-----EVPDARIAVGHGQMEPEKLEKIILDFVN 862 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 +LIAT+++E GIDV +A+ III NA+ FGL+ LHQLRGRVGR + C LL PP Sbjct: 863 YEYDVLIATSIVESGIDVPNANTIIINNAQQFGLSDLHQLRGRVGRSNRKAFCYLL-SPP 921 Query: 600 LS---KNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 LS + + RL ++N + G IA +DL R G +LG +QSG Sbjct: 922 LSSLTQEARRRLQAIENFSELGSGIHIAMQDLDIRGAGNMLGAEQSGF 969 >gi|229039959|ref|ZP_04189723.1| Transcription-repair-coupling factor [Bacillus cereus AH676] gi|229107740|ref|ZP_04237377.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-15] gi|296500886|ref|YP_003662586.1| transcription-repair coupling factor [Bacillus thuringiensis BMB171] gi|228675713|gb|EEL30920.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-15] gi|228727367|gb|EEL78560.1| Transcription-repair-coupling factor [Bacillus cereus AH676] gi|296321938|gb|ADH04866.1| transcription-repair coupling factor [Bacillus thuringiensis BMB171] Length = 1176 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I +I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 614 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 850 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988 >gi|319441663|ref|ZP_07990819.1| transcription-repair coupling factor [Corynebacterium variabile DSM 44702] Length = 1231 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 136/430 (31%), Positives = 226/430 (52%), Gaps = 21/430 (4%) Query: 219 EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 +W T+ + R A E+ A + L R+ G + + + +++ PF+ T+ Q Sbjct: 613 DWKTAKKKARGAVREIAAELVQLYAARQAAP---GFAFDPDNQWTRQMEEAFPFTETEDQ 669 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 +AI+ + DM + M R++ GDVG GKT VA+ A AV++G Q ++ P +LAQQH Sbjct: 670 YNAIEAVKDDMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQSGKQVAVLVPTTLLAQQH 729 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y Q+ + ++ ++ L +A G I++GTH L +Q+ L L Sbjct: 730 YRTFVDRMQDFPTTIRELSRFTSGRESKETLAGMADGTVDIVVGTHRLLATGVQWKNLGL 789 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VIVDE+ RFGV+ + +T T VL M+ATPIPRTL ++ G ++S I P R P Sbjct: 790 VIVDEEQRFGVEHKEHITSLRTHVDVLTMSATPIPRTLEMSMTGIREMSTILTPPEDRHP 849 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515 + T + + + +L +G + +++ +++ E ++ R +V Sbjct: 850 VLTYVGAQDDRHVAAAVRRELLRDG-QVFYVHNRVKSIEDAAAHIRELVPE--------- 899 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + + + HG+MS+ E+ + F + +L+ TT++E G+D+ +A+ +I+ENA H GL+Q Sbjct: 900 ARVVVAHGQMSEEQLETTVQGFWDREFDVLVCTTIVETGLDIANANTLIVENAHHMGLSQ 959 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630 LHQLRGRVGR E + Y L++ SY RL + D G +A +DL+ R Sbjct: 960 LHQLRGRVGRSRERAYAYFFYPKGEMLTETSYDRLRTIAENNDLGAGMAVAMKDLEMRGA 1019 Query: 631 GEILGIKQSG 640 G +LG +QSG Sbjct: 1020 GNVLGAEQSG 1029 >gi|238022627|ref|ZP_04603053.1| hypothetical protein GCWU000324_02536 [Kingella oralis ATCC 51147] gi|237865830|gb|EEP66966.1| hypothetical protein GCWU000324_02536 [Kingella oralis ATCC 51147] Length = 1156 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 147/419 (35%), Positives = 227/419 (54%), Gaps = 15/419 (3%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T+ Q +AI ++ D++Q M R++ GDVG GKT VAL A AV G Q ++AP Sbjct: 611 YEETEDQAAAIAAVIADLTQARPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPT 670 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +L +QH + + + V ++ R AL +A G I+IGTH L QD I Sbjct: 671 TLLVEQHAQNFADRFADFPVKVAQLSRFNSSKETRAALAGMADGTVDIVIGTHKLVQDDI 730 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + L LVI+DE+HRFGV+Q+ +L + +L +TATPIPRTL + G D S IT Sbjct: 731 SFKNLGLVIIDEEHRFGVRQKEQLKKLRANVDILTLTATPIPRTLSMALEGLRDFSLITT 790 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P+ R +KT + P + V E + L G + +++ +++ ++ ER +L Sbjct: 791 APSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIENMRERLETL 844 Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 + I + HG++ + + E VM F +L+ +T+IE GID+ +A+ III A+ Sbjct: 845 LPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADK 902 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627 FG+AQLHQLRGRVGR + LL +SK++ RL + ++ GF +A +DL+ Sbjct: 903 FGIAQLHQLRGRVGRSHHQAYAYLLTPEYISKDAEKRLDAIAAADELGAGFSLAMQDLEI 962 Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686 R GEILG QSG + + L+ +L+ A +D K + PDL + G + I L+ Sbjct: 963 RGAGEILGEGQSG--EMVQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLGVTTEIKLH 1017 >gi|30018324|ref|NP_829955.1| transcription-repair coupling factor [Bacillus cereus ATCC 14579] gi|229125571|ref|ZP_04254604.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-Cer4] gi|29893864|gb|AAP07156.1| Transcription-repair coupling factor [Bacillus cereus ATCC 14579] gi|228657888|gb|EEL13693.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-Cer4] Length = 1176 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I +I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 614 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 850 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988 >gi|149914914|ref|ZP_01903443.1| transcription-repair coupling factor [Roseobacter sp. AzwK-3b] gi|149811102|gb|EDM70939.1| transcription-repair coupling factor [Roseobacter sp. AzwK-3b] Length = 1155 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 143/399 (35%), Positives = 225/399 (56%), Gaps = 23/399 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P++ T Q AI+D+L D+ M R++ GDVG GKT VA+ A A +G Q ++AP Sbjct: 594 PYTETDDQLRAIEDVLADLDAGRPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVAVVAP 653 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHY+ + + + V ++ + Q E +A G I++GTHAL + Sbjct: 654 TTLLARQHYQSFAERFRGFPVTVRPLSRFVSQRDANLTREGLASGTVDIVVGTHALLAKN 713 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ L L+++DE+ RFGV + +L Q + HVL +TATPIPRTL L+ G D+S I Sbjct: 714 IRFKNLGLLVIDEEQRFGVAHKERLKQLRSDVHVLTLTATPIPRTLQLSLSGVRDLSIIG 773 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R I+T ++ D V R + +L E G +++++ P+I++ E +E Sbjct: 774 TPPVDRLSIRTY---VSEFDPVTIR-EALLREHYRGGQSFFVVPRIDDLPE------IEA 823 Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 F L E S I HG+M+ D + M++F +G +L+ATT++E G+D+ A+ +II Sbjct: 824 F--LSEQVPEVSYVIAHGQMAARDLDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMII 881 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 A+ FGL+QL+Q+RGRVGR + + L P L+ + RL VL + + GF + Sbjct: 882 HRADMFGLSQLYQIRGRVGRSKTRAYAYLTTRPRARLTPAAEKRLRVLGSLDTLGAGFTL 941 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 A +DL R G +LG +QSG + + EL+ S+LE A Sbjct: 942 ASQDLDIRGAGNLLGEEQSGQMRDV--GYELYQSMLEEA 978 >gi|229188339|ref|ZP_04315388.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 10876] gi|228595138|gb|EEK52908.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 10876] Length = 1176 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I +I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 614 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 850 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988 >gi|305665487|ref|YP_003861774.1| transcription-repair coupling factor [Maribacter sp. HTCC2170] gi|88710243|gb|EAR02475.1| transcription-repair coupling factor [Maribacter sp. HTCC2170] Length = 1172 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 142/414 (34%), Positives = 228/414 (55%), Gaps = 19/414 (4%) Query: 237 QIALLLMRKQFKK--EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 QIA L++ K+ E G + + + ++ + + T Q A +D+ +DM + M Sbjct: 570 QIAFDLIKVYAKRRLEKGFQYDPDSYLQLELEASFIYEDTPDQGKATEDVKKDMESERPM 629 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R++ GDVG GKT VA+ A AV+ G Q I+ P ILA QH+ + + + V+ Sbjct: 630 DRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAILVPTTILAYQHHRTFSERLKELPVSVDY 689 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 + +R+ LER+ +G+ IIIGTH L ++++ L L+IVDE+ +FGV + KL Sbjct: 690 LNRFRTAKEKRETLERLENGKVDIIIGTHQLVNKNVKFKDLGLLIVDEEQKFGVSVKDKL 749 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-E 473 VL +TATPIPRTL + + D+S I P R PI++ +I N +E+I + Sbjct: 750 KSIKENVDVLTLTATPIPRTLQFSLMAARDLSVINTPPPNRYPIESNVIRFN--EEIIRD 807 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 + + G + ++I +IE KE +++R + I I HG+ E++ Sbjct: 808 AVSYEIQRGGQIFFIHNRIENIKE--VAGMLQRLVP-----DAKIGIGHGQKDGKKLEAL 860 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M +F NG +L++TT++E G+DV +A+ I I NA +FGL+ LHQ+RGRVGR + + C Sbjct: 861 MLAFMNGEFDVLVSTTIVESGLDVTNANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCY 920 Query: 594 LLYHPP---LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGM 641 + PP ++ + R+ L+ TE GF IA +DL+ R G++LG +QSG Sbjct: 921 FI-TPPYEVMTNEARKRIQALEQFTELGSGFNIAMKDLEIRGAGDLLGGEQSGF 973 >gi|229027900|ref|ZP_04184055.1| Transcription-repair-coupling factor [Bacillus cereus AH1271] gi|228733414|gb|EEL84241.1| Transcription-repair-coupling factor [Bacillus cereus AH1271] Length = 1176 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 215/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I++I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 614 QEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKAD 850 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTE 961 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988 >gi|206972595|ref|ZP_03233538.1| transcription-repair coupling factor [Bacillus cereus AH1134] gi|228950602|ref|ZP_04112737.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229176654|ref|ZP_04304059.1| Transcription-repair-coupling factor [Bacillus cereus 172560W] gi|206732497|gb|EDZ49676.1| transcription-repair coupling factor [Bacillus cereus AH1134] gi|228606821|gb|EEK64237.1| Transcription-repair-coupling factor [Bacillus cereus 172560W] gi|228809077|gb|EEM55561.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 1176 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I +I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 614 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 850 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988 >gi|283138935|gb|ADB12538.1| transcription-repair coupling factor [uncultured bacterium 9F08] Length = 1155 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 134/379 (35%), Positives = 209/379 (55%), Gaps = 17/379 (4%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 PF T Q+ AI +L DM + M R++ GDVG GKT VA+ A AV G Q ++ Sbjct: 607 FPFEETPDQQDAIDAVLADMRAEQPMDRLICGDVGFGKTEVAMRAAFVAVMGGRQVAVLV 666 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LA+QH + ++ + + +E ++ +++ L+ + G I+IGTH L Q+ Sbjct: 667 PTTLLAEQHTQNLRDRFADWPVRIESLSRFRSSKEQQQVLKGLEEGSVDIVIGTHKLLQE 726 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 I+Y +L +VI+DE+HRFGV+Q+ + VL +TATPIPRTL + G ++S I Sbjct: 727 GIRYKRLGMVIIDEEHRFGVRQKERFKALRAEVDVLTLTATPIPRTLNMAMGGIRELSII 786 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 PA R +KT + N + V E + G + Y++ +++ +E+ + Sbjct: 787 ASPPARRLAVKTFVHEWN-PELVKEACLREVRRGGQVYFLHNEVD---------TIEKIS 836 Query: 509 SLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 E +SI + HG+M + + E VM F + LL+ TT+IE GID+ A+ III Sbjct: 837 RDLEELLPEASIGVAHGQMPERELERVMSDFYHQRFNLLVCTTIIETGIDIPSANTIIIN 896 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIA 621 A+ GLAQL+QLRGRVGR + LL ++K++ RL +++ E+ GF +A Sbjct: 897 RADRLGLAQLYQLRGRVGRSHHRAYAYLLIPSKRSMTKDAGKRLEAIESIEELGTGFTLA 956 Query: 622 EEDLKQRKEGEILGIKQSG 640 DL+ R GE+LG +QSG Sbjct: 957 THDLEIRGAGELLGEEQSG 975 >gi|311070702|ref|YP_003975625.1| transcription-repair coupling factor [Bacillus atrophaeus 1942] gi|310871219|gb|ADP34694.1| transcription-repair coupling factor [Bacillus atrophaeus 1942] Length = 1177 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 133/380 (35%), Positives = 212/380 (55%), Gaps = 21/380 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q +I +I +DM ++ M R+L GDVG GKT VA+ A A+ G Q ++ P Sbjct: 621 PYQETEDQLRSINEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQVALLVP 680 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHYE I + Q+ + V +++ + + ++ + +G ++IGTH L Sbjct: 681 TTILAQQHYETIMERFQDYPLTVGLLSRFRTRKEANETIKGLKNGTVDMVIGTHRLLSKD 740 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG D+S I Sbjct: 741 VVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGVRDLSVIE 800 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 P R P++T ++ N + E IER L+ G + Y++ +++ E+K +V Sbjct: 801 TPPENRFPVQTYVVEYNGALVREAIER---ELARGGQVYFLYNRVDDIERKADEISMLVP 857 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + +A HG+M++ + ESVM +F G +L++TT+IE G+D+ + + +I+ Sbjct: 858 ---------DAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIV 908 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620 + + GL+QL+QLRGRVGR ++ Y L++ + RL +K TE GF I Sbjct: 909 FDGDKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKI 968 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL R G +LG +Q G Sbjct: 969 AMRDLTIRGAGNLLGAQQHG 988 >gi|315187200|gb|EFU20957.1| transcription-repair coupling factor [Spirochaeta thermophila DSM 6578] Length = 1127 Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 135/415 (32%), Positives = 234/415 (56%), Gaps = 17/415 (4%) Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 E LA ++ + R++ P + E ++ + PF T+ Q I+++ +DM Sbjct: 549 EDLAKRLLAIYSRRKLAHGFAFPPDTEWQM--EFEARFPFEETEDQLRCIEEVKRDMESP 606 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351 M R++ GDVG GKT +AL A AV AG Q I+AP IL +QHYE ++ + + Sbjct: 607 RPMDRLVCGDVGFGKTEIALRAAFKAVTAGKQVAILAPTTILVEQHYETFQERLEGFPVR 666 Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411 +++ +P +++ L+ + G+ I+IGTH + Q + + L L+++DE+ RFGV+ + Sbjct: 667 AAMLSRFVPVPEQKEILKALREGKIDILIGTHRILQKDVVFKDLGLLVIDEEQRFGVKDK 726 Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471 +L + + L +TATPIPRTL ++ L DIS + P R+PI+T I+ + +EV Sbjct: 727 ERLKELKASVDCLTLTATPIPRTLHMSLLKIRDISLLETPPRERRPIETHILEFS--EEV 784 Query: 472 IER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530 I R ++ + G + +++ ++E + ++ +ER + + HG+MS Sbjct: 785 IARAIRREVERGGQVFYLHNRVETLPQ--VKTFIERLVP-----EVMVEVAHGKMSSHQL 837 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 E +M F +G +L++TT+IE GI++ +A+ III+ A+ +G+AQL+QLRGRVGR + + Sbjct: 838 EEIMHRFIHGGFHVLVSTTIIENGINIPNANTIIIDRADMYGIAQLYQLRGRVGRSDRTA 897 Query: 591 SCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 L Y +S+ + RL V+ + + GF +A +DL+ R G +LG +QSG Sbjct: 898 YAYLFYPAQREISELAAKRLQVIADHTELGAGFKVALKDLEVRGAGNLLGREQSG 952 >gi|187777479|ref|ZP_02993952.1| hypothetical protein CLOSPO_01047 [Clostridium sporogenes ATCC 15579] gi|187774407|gb|EDU38209.1| hypothetical protein CLOSPO_01047 [Clostridium sporogenes ATCC 15579] Length = 1172 Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 143/437 (32%), Positives = 232/437 (53%), Gaps = 35/437 (8%) Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EWT + + + + +E+ + L +R K G + + ++ P+ T Q Sbjct: 577 EWTKTKNKVKKSIEEIAEDLVKLYAIRATLK---GYKYSDDTVWQKQFEEEFPYEETPDQ 633 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 AI+DI +DM M R+L GDVG GKT VA+ A AV G Q + P ILAQQH Sbjct: 634 VLAIEDIKRDMESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVAFLVPTTILAQQH 693 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y K+ + + V++I+ + ++ ++ I G I+IGTH + Q I++ L L Sbjct: 694 YNNFKQRFSDFPVTVDVISRFRTLSEQKATIKSIKEGNVDILIGTHRILQKDIKFKDLGL 753 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +I+DE+ RFGV+ + K+ VL ++ATPIPRTL ++ +G DIS I P R P Sbjct: 754 LIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLVGVRDISVIETPPEERYP 813 Query: 458 IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515 ++T ++ N D++I + + +S G + Y++ ++E S+HE + Sbjct: 814 VQTYVVEYN--DQLIRDSILREISRGGQIYFVYNRVE---------------SIHEMASY 856 Query: 516 -------SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 + I HG+M + + E+V+ F +L+ATT+IE G+D+ + + +II +A Sbjct: 857 ISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILVATTIIETGMDIKNVNTMIIYDA 916 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623 + GL+QL+QLRGRVGR ++ C L Y L++ + RL +K+ TE GF IA + Sbjct: 917 DKMGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALK 976 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R G ++G Q G Sbjct: 977 DLEIRGAGNMMGSAQHG 993 >gi|255529938|ref|YP_003090310.1| transcription-repair coupling factor [Pedobacter heparinus DSM 2366] gi|255342922|gb|ACU02248.1| transcription-repair coupling factor [Pedobacter heparinus DSM 2366] Length = 1113 Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 141/436 (32%), Positives = 229/436 (52%), Gaps = 24/436 (5%) Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 K ++G +G + ++ + + T QE A D+ +DM + M R++ GDVG GKT Sbjct: 536 KSQVGTAFAPDGYLETELEASFIYEDTPDQEKATSDVKKDMEAPHPMDRLVCGDVGFGKT 595 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +A+ A AV G QA ++ P ILA QH++ ++ V+ I ++ Sbjct: 596 EIAIRAAFKAVANGKQAAVLVPTTILALQHFKTFTGRLKDFPCTVDYINRFKTSKQIKET 655 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 L ++A G+ IIIGTH L +++ L ++I+DE+ +FGV + KL L +T Sbjct: 656 LAKVAEGKVDIIIGTHRLLSKDVKFKDLGIMIIDEEQKFGVSSKEKLRALRVNVDTLTLT 715 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAY 486 ATPIPRTL + +G D+S ++ P R+ + T + N D++I E ++ L G + + Sbjct: 716 ATPIPRTLHFSLMGARDLSIMSTPPPNRQAVNTELHVFN--DKLIQEAVQFELDRGGQVF 773 Query: 487 WICPQIEEKKESN--FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544 +I ++ + + +++V + + I I HG++ E VM F NG + Sbjct: 774 FIHNRVHDLPQLGGLIQTLVPK---------ARIGIAHGQLDGDQLEDVMLDFINGEKDV 824 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS--- 601 L+ATT+IE G+D+ +A+ III +A FGL+ LHQ+RGRVGR + + C LL PPLS Sbjct: 825 LVATTIIEAGLDIPNANTIIINHAHMFGLSDLHQMRGRVGRSNKKAFCYLL-SPPLSTLT 883 Query: 602 KNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSL 655 + RLS ++ D GF IA DL R G +LG +QSG F + L +++ Sbjct: 884 SEARKRLSAIEEFSDLGSGFNIAMRDLDIRGSGNLLGAEQSGFIAEIGFEMYHKILDEAI 943 Query: 656 LEIARKDAKHILTQDP 671 E+ + K + +P Sbjct: 944 QELKTDEFKDLFKDEP 959 >gi|168181008|ref|ZP_02615672.1| transcription-repair coupling factor [Clostridium botulinum NCTC 2916] gi|226950995|ref|YP_002806086.1| transcription-repair coupling factor [Clostridium botulinum A2 str. Kyoto] gi|182668078|gb|EDT80057.1| transcription-repair coupling factor [Clostridium botulinum NCTC 2916] gi|226842319|gb|ACO84985.1| transcription-repair coupling factor [Clostridium botulinum A2 str. Kyoto] Length = 1168 Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 145/437 (33%), Positives = 232/437 (53%), Gaps = 35/437 (8%) Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EWT + + + + +E+ + L +R K G + + ++ P+ T Q Sbjct: 573 EWTKTKNKVKKSIEEIAEDLVKLYAIRATLK---GYKYSDDTVWQKQFEEEFPYEETPDQ 629 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 AI+DI +DM M R+L GDVG GKT VA+ A AV G Q + P ILAQQH Sbjct: 630 LLAIEDIKRDMESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVAFLVPTTILAQQH 689 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y K+ + I V++I+ + ++ ++ I G I+IGTH + Q I++ L L Sbjct: 690 YNNFKQRFWDFPITVDVISRFRTLSEQKATIKSIKEGNVDILIGTHRILQKDIKFKDLGL 749 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +I+DE+ RFGV+ + K+ VL ++ATPIPRTL ++ +G DIS I P R P Sbjct: 750 LIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLVGVRDISVIETPPEERYP 809 Query: 458 IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515 ++T ++ N D++I + + +S G + Y++ ++E S+HE + Sbjct: 810 VQTYVVEYN--DQLIRDSILREISRGGQIYFVYNRVE---------------SIHEMASY 852 Query: 516 -------SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 + I HG+M + + E+V+ F +LIATT+IE G+D+ + + +II +A Sbjct: 853 ISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDA 912 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623 + GL+QL+QLRGRVGR ++ C L Y L++ + RL +K+ TE GF IA + Sbjct: 913 DKMGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALK 972 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R G ++G Q G Sbjct: 973 DLEIRGAGNMMGSAQHG 989 >gi|153940210|ref|YP_001392893.1| transcription-repair coupling factor [Clostridium botulinum F str. Langeland] gi|152936106|gb|ABS41604.1| transcription-repair coupling factor [Clostridium botulinum F str. Langeland] gi|295320870|gb|ADG01248.1| transcription-repair coupling factor [Clostridium botulinum F str. 230613] Length = 1168 Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 145/437 (33%), Positives = 231/437 (52%), Gaps = 35/437 (8%) Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EWT + + + + +E+ + L +R K G + + ++ P+ T Q Sbjct: 573 EWTKTKNKVKKSIEEIAEDLVKLYAIRATLK---GYKYSDDTVWQKQFEEEFPYEETPDQ 629 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 AI+DI +DM M R+L GDVG GKT VA+ A AV G Q + P ILAQQH Sbjct: 630 LLAIEDIKRDMESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVAFLVPTTILAQQH 689 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y K+ + I V++I+ + ++ ++ I G I+IGTH + Q I++ L L Sbjct: 690 YNNFKQRFSDFPITVDVISRFRTLSEQKATIKSIKEGNVDILIGTHRILQKDIKFKDLGL 749 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +I+DE+ RFGV+ + K+ VL ++ATPIPRTL ++ +G DIS I P R P Sbjct: 750 LIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLVGVRDISVIETPPEERYP 809 Query: 458 IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515 ++T ++ N D++I + + +S G + Y++ ++E S+HE + Sbjct: 810 VQTYVVEYN--DQLIRDSILREISRGGQIYFVYNRVE---------------SIHEMASY 852 Query: 516 -------SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 + I HG+M + + E V+ F +LIATT+IE G+D+ + + +II +A Sbjct: 853 ISKLVPEGRVQIAHGQMKEKELEHVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDA 912 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623 + GL+QL+QLRGRVGR ++ C L Y L++ + RL +K+ TE GF IA + Sbjct: 913 DKMGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALK 972 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R G ++G Q G Sbjct: 973 DLEIRGAGNMMGSAQHG 989 >gi|86140950|ref|ZP_01059509.1| transcription-repair coupling factor [Leeuwenhoekiella blandensis MED217] gi|85832892|gb|EAQ51341.1| transcription-repair coupling factor [Leeuwenhoekiella blandensis MED217] Length = 1127 Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 132/377 (35%), Positives = 208/377 (55%), Gaps = 15/377 (3%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T Q SA + + DM M R++ GDVG GKT VA+ A AV+ G Q ++ P Sbjct: 557 YEDTPDQSSATEAVKADMESPRPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPT 616 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 ILA QH++ + ++ + V+ + +R+ LER+ +G+ IIIGTH L ++ Sbjct: 617 TILAFQHHKTFSERLKDLPVTVDYLNRFRTAKEKRETLERLENGRVDIIIGTHQLTNKNV 676 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L L+IVDE+ +FGV + KL L +TATPIPRTL + + D+S IT Sbjct: 677 KFKDLGLLIVDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTLQFSLMAARDLSTITT 736 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P R PI+T II ++ + + + + + G + ++I +++ KE +++R Sbjct: 737 PPPNRYPIETHIIRLSE-ETIRDAISYEIQRGGQVFFIHNRLQNIKE--VAGMIQRLVP- 792 Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 + +AI HG+M E +M F +G +L++TT+IE G+DV +A+ I I NA + Sbjct: 793 ----DAKVAIGHGQMDGKKLEELMLQFMDGAFDVLVSTTIIESGLDVPNANTIFINNANN 848 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLS------KNSYTRLSVLKNTEDGFLIAEED 624 FGL+ LHQ+RGRVGR + + C + PPLS + T L + GF IA +D Sbjct: 849 FGLSDLHQMRGRVGRSNKKAFCYFI-TPPLSAMTDDARKRITALEQFSSLGSGFNIAMKD 907 Query: 625 LKQRKEGEILGIKQSGM 641 L+ R G++LG +QSG Sbjct: 908 LEIRGAGDLLGGEQSGF 924 >gi|158422845|ref|YP_001524137.1| transcription-repair coupling factor [Azorhizobium caulinodans ORS 571] gi|158329734|dbj|BAF87219.1| transcription-repair coupling factor [Azorhizobium caulinodans ORS 571] Length = 1171 Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 146/402 (36%), Positives = 224/402 (55%), Gaps = 29/402 (7%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T QE+AI +L D+S + M R++ GDVG GKT VAL A A +G Q ++ P Sbjct: 619 PYEETDDQEAAISAVLDDLSSGHPMDRLVCGDVGFGKTEVALRAAFAVALSGKQVAVVVP 678 Query: 330 IGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +LA+QH+ E K N ++TG A ++ + G I++GTHAL Sbjct: 679 TTLLARQHFRTFSERFKGLPVNVAQASRMVTGKDLTAVKKG----LTDGTVDIVVGTHAL 734 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445 +IQ+ L LVIVDE+ FGV + +L + HVL +TATPIPRTL L G ++ Sbjct: 735 LGKTIQFRDLGLVIVDEEQHFGVAHKERLKALRSEVHVLTLTATPIPRTLQLAMTGVREL 794 Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRS 502 S I P R ++T + P D +I R + +L E G +++++ P+I++ E R Sbjct: 795 SLIATPPVDRLAVRTFVTP---FDPLIVR-EALLRERYRGGQSFYVVPRIDDLAE--VRE 848 Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 +E+ S+ E +A+ HG+M+ E +M +F +G +L++TT++E G+DV +A+ Sbjct: 849 FLEK--SVPE---VKVAVAHGQMAAGTLEDIMTAFYDGQYDVLLSTTIVESGLDVPNANT 903 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---G 617 +I+ A+ FGLAQL+QLRGRVGR + + I P++ + RL VL++ E G Sbjct: 904 LIVHRADMFGLAQLYQLRGRVGRAKARAYAIFSVPATKPITAQAERRLKVLQSLETLGAG 963 Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 F +A DL R G +LG +QSG K + EL+ +LE A Sbjct: 964 FQLASHDLDIRGAGNLLGDEQSGHIKEV--GYELYQEMLEEA 1003 >gi|229159227|ref|ZP_04287252.1| Transcription-repair-coupling factor [Bacillus cereus R309803] gi|228624242|gb|EEK81043.1| Transcription-repair-coupling factor [Bacillus cereus R309803] Length = 1176 Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 215/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I++I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 614 QEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKAD 850 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988 >gi|168335026|ref|ZP_02693140.1| transcription-repair coupling factor [Epulopiscium sp. 'N.t. morphotype B'] Length = 1175 Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 175/595 (29%), Positives = 303/595 (50%), Gaps = 47/595 (7%) Query: 61 ISEISEE-RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEML----KN 115 ++EI EE +I T G ++ + +QK +IL+ +G ++ F Y E + + Sbjct: 431 VAEILEEQKIYTALGDLT----YDIQKG---QILI--ASGSLSHGFIYEDLEFVILSDRE 481 Query: 116 VFFEGRKITVTGKIK--KLKNRIIMVHPHYIFHNSQDVN-FPLIEAVYSLPTGLSVDLFK 172 +F + RK++ K K K+++ + + Y+ H + + F IE + + G++ D K Sbjct: 482 LFGKDRKVSTKKKYKGAKIESFMELAEGDYVVHENHGIGIFIGIEKI--VTEGVARDNLK 539 Query: 173 KIIVEALSRLPVLPEWIEKDLLQKK-SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231 I E + + + DL+QK A N++ NP EW + Sbjct: 540 -INYEGGTLYVNINQM---DLVQKYVGSEGAAPKLNMLGNP------EWKKAKSKARNSV 589 Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 + +A ++ LL +++ + G + + + P+ T Q AI+ + DM Sbjct: 590 KNIAKELILLYSKRENSR--GFAYEKDSIWQTEFEESFPYEETSDQIDAIQAVKTDMESD 647 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351 M R++ GDVG GKT VA+ A A+ Q + P +LAQQH+E K ++ I Sbjct: 648 KIMDRLILGDVGYGKTEVAIRAAFKAILNHKQVAYLVPTTVLAQQHFERFLKRMESQAIS 707 Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411 V +++ ++ L+ I G I+IGTH L + + L L+I+DE+ RFGV + Sbjct: 708 VGVLSRFRTPKQIKETLKGIESGMIDIVIGTHRLLSKDVLFKDLGLLIIDEEQRFGVAHK 767 Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471 KL Q T L +TATPIPRTL ++ +G D+S I E P+ R+ ++T ++ D + Sbjct: 768 EKLKQMRTEVDALTLTATPIPRTLQMSLIGIRDMSVIEEAPSERRAVQTYVLE-ESDDFI 826 Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDK 530 + + ++ + Y++ +++ ++VE+ L + +A+ HG+MS + Sbjct: 827 KDAINREINREGQVYFLSXRVQ--------NIVEKAAQLSNMVPXAKVALAHGQMSVREL 878 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 E++M+ F+N +L+ TT+IE G+D+ +A+ III +A+ GL+QL+QLRGRVGR ++ + Sbjct: 879 EAIMERFENKEINVLVCTTIIETGLDIANANTIIIVDADKMGLSQLYQLRGRVGRSDKQA 938 Query: 591 SCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 LLY LS+ + RL+ +K GF IA DL+ R G++LG QSG Sbjct: 939 YAYLLYKRDXILSEVAEKRLNAIKQFTQLGAGFKIAMRDLEIRGAGDLLGASQSG 993 >gi|291614691|ref|YP_003524848.1| transcription-repair coupling factor [Sideroxydans lithotrophicus ES-1] gi|291584803|gb|ADE12461.1| transcription-repair coupling factor [Sideroxydans lithotrophicus ES-1] Length = 1190 Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 149/424 (35%), Positives = 226/424 (53%), Gaps = 23/424 (5%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q +AI+ +L D+ M R++ GDVG GKT VAL A A G Q ++ P Sbjct: 647 FEETADQAAAIEAVLLDLQSGKPMDRLICGDVGFGKTEVALRAAFVAASEGKQVAVLVPT 706 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA+QH++ + I + ++ +AL+ +A G+ I+IGTH L Q + Sbjct: 707 TLLAEQHFQNFSTRFADWPIRIAELSRFRSAKEVTQALKDLADGKLDIVIGTHKLIQKDV 766 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 +++ L LVI+DE+HRFGVQQ+ KL VL +TATPIPRTL ++ G D S I Sbjct: 767 KFHNLGLVILDEEHRFGVQQKEKLKALRAEVDVLTLTATPIPRTLAMSLEGLRDFSVIAT 826 Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R IKT + ++ I E + R L G + Y++ +++ +++E+ Sbjct: 827 APQRRLSIKTFVSGFSQGVIREAVLR---ELKRGGQVYFLHNEVD-----TIANMLEKLE 878 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 +L + I + HG+M + D E+VM F + +L+ +T+IE GIDV A+ II+ A Sbjct: 879 TLLPE--ARIRVAHGQMGERDLEAVMRDFHHQRFNVLLCSTIIETGIDVPTANTIIMNRA 936 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEE 623 + FGLAQLHQLRGRVGR + LL L+ + RL ++ E GF +A Sbjct: 937 DRFGLAQLHQLRGRVGRSHHQAYAYLLVDSMDGLTAQAKKRLEAIQAMEQLGSGFFLAMH 996 Query: 624 DLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682 DL+ R GE+LG QSG M + + L++ +L A K ++PD+T G + Sbjct: 997 DLEIRGAGEVLGESQSGEMQEIGFS---LYNDMLAAAIASLKQ--GKEPDMTHPLGVTTE 1051 Query: 683 ILLY 686 I L+ Sbjct: 1052 INLH 1055 >gi|77917709|ref|YP_355524.1| transcription-repair coupling factor [Pelobacter carbinolicus DSM 2380] gi|77543792|gb|ABA87354.1| transcription-repair coupling factor [Pelobacter carbinolicus DSM 2380] Length = 1161 Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 137/378 (36%), Positives = 213/378 (56%), Gaps = 17/378 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +AI D+L DM M R++ GDVG GKT VA+ A A G Q ++ P Sbjct: 621 PYEETADQMAAINDVLTDMQTPRAMDRVICGDVGYGKTEVAIRAAYKAALDGKQVAVLVP 680 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILA+QH + + ++T + V ++ A +++ L++ A G+ I+IGTH L Q Sbjct: 681 TTILARQHGQTFAERLKDTPVTVASLSRLNSSAEQKQILQQAADGKIDILIGTHRLLQRD 740 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +++ L L+IVDE+ RFGV + +L + +L +TATPIPRTL ++ LG D+S I Sbjct: 741 VRFKDLGLLIVDEEQRFGVTHKERLKKLRAEVDLLTLTATPIPRTLHMSLLGLRDLSVID 800 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R+ I+T ++R D+ + R ++ L G + +++ +++ N ++ E Sbjct: 801 TPPVDRQVIRTY---VSRFDDDLIRQAILNELRRGGQVFFVHNRVQ-----NIGAMAEFI 852 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 SL T +A+ HG+M++ E+VM F G +L+ +T+IE G+D+ A+ II+ Sbjct: 853 QSLVPEAT--VAVGHGQMTEKALEAVMMDFVEGKTNVLVCSTIIENGLDIPRANTIIVNR 910 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAE 622 A+ FGLAQL+QLRGRVGR + LL L+ + RL VL + GF IA Sbjct: 911 ADCFGLAQLYQLRGRVGRSHLRAYAYLLIPGESTLTHEARERLRVLTELTELGAGFRIAS 970 Query: 623 EDLKQRKEGEILGIKQSG 640 DL+ R G++LG KQSG Sbjct: 971 HDLELRGAGDLLGPKQSG 988 >gi|171463611|ref|YP_001797724.1| transcription-repair coupling factor [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193149|gb|ACB44110.1| transcription-repair coupling factor [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 1181 Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 148/379 (39%), Positives = 204/379 (53%), Gaps = 21/379 (5%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q I+AP Sbjct: 622 FEETPDQANAIAAVIGDMTSGTPMDRLVCGDVGFGKTEVALRASFVAVMGGKQVAILAPT 681 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA+QH K + + + ++ AL IA G+A IIIGTH L Sbjct: 682 TLLAEQHVATWKDRFADWPVRIVELSRFKTTKEINVALAAIAKGEADIIIGTHKLLSKET 741 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 Q+ L LVI DE+HRFGV+Q+ L +L +TATPIPRTL + G + S I Sbjct: 742 QFANLGLVIADEEHRFGVRQKDALKALRAEVDILTLTATPIPRTLGMAMEGLREFSIIAT 801 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERF 507 P R IKT + D+VI + VL E G + Y++ ++E ++ R Sbjct: 802 APQKRLAIKTFV--RREGDDVIR--EAVLREIKRGGQVYFLHNEVE--------TIQNRK 849 Query: 508 NSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 ++L E + I++ HG+M + + ESVM F +L+ TT+IE GIDV A+ II+ Sbjct: 850 HALQELIPEARISVAHGQMHERELESVMREFVTQRTNILLCTTIIETGIDVPTANTIIMH 909 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIA 621 A+ FGLAQLHQLRGRVGR + LL LSK + RL+ ++ E+ GF +A Sbjct: 910 RADKFGLAQLHQLRGRVGRSHHRAYAYLLVPNSEALSKQAQLRLNAIQAMEELGSGFYLA 969 Query: 622 EEDLKQRKEGEILGIKQSG 640 DL+ R GE+LG KQSG Sbjct: 970 MHDLEIRGAGEVLGDKQSG 988 >gi|227542464|ref|ZP_03972513.1| transcription-repair coupling factor [Corynebacterium glucuronolyticum ATCC 51866] gi|227181662|gb|EEI62634.1| transcription-repair coupling factor [Corynebacterium glucuronolyticum ATCC 51866] Length = 1218 Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 130/379 (34%), Positives = 202/379 (53%), Gaps = 15/379 (3%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 N P+ T+ Q AI + DM Q M R++ GDVG GKT VA+ A AV+ G Q ++ Sbjct: 629 NFPYVETEDQMLAIDAVKHDMEQPVPMDRVIIGDVGYGKTEVAVRAAFKAVQDGKQVAVL 688 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH ++ I + ++ P R+ ++ + G I+IGTH L Q Sbjct: 689 VPTTLLAQQHEATFRERMDGFGITIRQLSRFTPDKQAREIIKGLVDGSVDIVIGTHRLLQ 748 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +Q+ L LVIVDE+ RFGV+ + + VL M+ATPIPRTL ++ G +++ Sbjct: 749 TGVQWKDLGLVIVDEEQRFGVEHKEHIKALRAHVDVLTMSATPIPRTLEMSMSGIREMTT 808 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 I P R+P+ T + +V ++ L + +++ + +S+ ER Sbjct: 809 ILTPPQDRRPVLT-YVGAQEDKQVAAAIRRELLRDGQVFYV--------HNRVKSIEERA 859 Query: 508 NSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 L E + I + HG+MS+ E + F + +L+ TT++E G+D+ +A+ +I+E Sbjct: 860 RQLRELVPEARIVVAHGQMSEEQLEKTVQGFWDREFDVLVCTTIVETGLDIANANTLIVE 919 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIA 621 NA H GL+QLHQLRGRVGR E + LY L++ SY RL+ + D G +A Sbjct: 920 NAHHMGLSQLHQLRGRVGRSRERAYAYFLYPKGQVLTETSYERLTTIAQNNDMGAGMAVA 979 Query: 622 EEDLKQRKEGEILGIKQSG 640 +DL+ R G +LG +QSG Sbjct: 980 MKDLEMRGAGNVLGAEQSG 998 >gi|152980432|ref|YP_001353098.1| transcription-repair coupling factor [Janthinobacterium sp. Marseille] gi|151280509|gb|ABR88919.1| transcription-repair coupling factor (superfamily II helicase) [Janthinobacterium sp. Marseille] Length = 1147 Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 152/423 (35%), Positives = 224/423 (52%), Gaps = 19/423 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q +AI +++DM+ M R++ GDVG GKT VAL A AV G Q I+AP Sbjct: 603 FEETADQAAAINAVIKDMTSGKPMDRLICGDVGFGKTEVALRAAFVAVLGGKQVAILAPT 662 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA+QH + + + + ++ +A++ +A G I+IGTH L I Sbjct: 663 TLLAEQHAQTFADRFADWPVRIAELSRFRTAKEVTQAIKGMADGTIDIVIGTHKLLSGDI 722 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G D S I Sbjct: 723 KFSRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSIIAT 782 Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P R IKT + N D VI E L G + Y++ ++E + N ++++E Sbjct: 783 APQKRLAIKTFVRSEN--DSVIREACLRELKRGGQVYFLHNEVETIQ--NRKAMLEELMP 838 Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 + I + HG++ + D E +M F +L+ TT+IE GIDV A+ II+ A+ Sbjct: 839 -----EARIGVAHGQLHERDLERIMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRAD 893 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEED 624 FGLAQLHQLRGRVGR + LL H LSK + RL ++ E+ GF +A D Sbjct: 894 KFGLAQLHQLRGRVGRSHHQAYAYLLVHDVQGLSKLAQRRLDAIQQMEELGSGFYLAMHD 953 Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684 L+ R GE+LG QSG + Q L+ +L A + K+ ++PDL + + I Sbjct: 954 LEIRGAGEVLGDNQSGEMSEIGFQ--LYSDMLNEAVRSLKN--GKEPDLAAPLASTTEIN 1009 Query: 685 LYL 687 L++ Sbjct: 1010 LHV 1012 >gi|227487825|ref|ZP_03918141.1| transcription-repair coupling factor [Corynebacterium glucuronolyticum ATCC 51867] gi|227092152|gb|EEI27464.1| transcription-repair coupling factor [Corynebacterium glucuronolyticum ATCC 51867] Length = 1218 Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 130/379 (34%), Positives = 202/379 (53%), Gaps = 15/379 (3%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 N P+ T+ Q AI + DM Q M R++ GDVG GKT VA+ A AV+ G Q ++ Sbjct: 629 NFPYVETEDQMLAIDAVKHDMEQPVPMDRVIIGDVGYGKTEVAVRAAFKAVQDGKQVAVL 688 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LAQQH ++ I + ++ P R+ ++ + G I+IGTH L Q Sbjct: 689 VPTTLLAQQHEATFRERMDGFGITIRQLSRFTPDKQAREIIKGLVDGSVDIVIGTHRLLQ 748 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +Q+ L LVIVDE+ RFGV+ + + VL M+ATPIPRTL ++ G +++ Sbjct: 749 TGVQWKDLGLVIVDEEQRFGVEHKEHIKALRAHVDVLTMSATPIPRTLEMSMSGIREMTT 808 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 I P R+P+ T + +V ++ L + +++ + +S+ ER Sbjct: 809 ILTPPQDRRPVLT-YVGAQEDKQVAAAIRRELLRDGQVFYV--------HNRVKSIEERA 859 Query: 508 NSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 L E + I + HG+MS+ E + F + +L+ TT++E G+D+ +A+ +I+E Sbjct: 860 RQLRELVPEARIVVAHGQMSEEQLEKTVQGFWDREFDVLVCTTIVETGLDIANANTLIVE 919 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIA 621 NA H GL+QLHQLRGRVGR E + LY L++ SY RL+ + D G +A Sbjct: 920 NAHHMGLSQLHQLRGRVGRSRERAYAYFLYPKGQVLTETSYERLTTIAQNNDMGAGMAVA 979 Query: 622 EEDLKQRKEGEILGIKQSG 640 +DL+ R G +LG +QSG Sbjct: 980 MKDLEMRGAGNVLGAEQSG 998 >gi|317052468|ref|YP_004113584.1| transcription-repair coupling factor [Desulfurispirillum indicum S5] gi|316947552|gb|ADU67028.1| transcription-repair coupling factor [Desulfurispirillum indicum S5] Length = 1048 Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 134/389 (34%), Positives = 211/389 (54%), Gaps = 15/389 (3%) Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317 + + + + P+ T+ Q AIK+ ++DM + M R++ GDVG GKT +AL A Sbjct: 504 DSSLYDEFVAQFPYEETEDQLQAIKETIEDMCSPHPMDRLVCGDVGYGKTEIALRAAMKC 563 Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377 VE+G QA I+AP IL +QH+ ++ I V++++ + A+ R+A G+ Sbjct: 564 VESGYQAAILAPTTILVEQHFRTFRERFTPFGIRVDMLSRFRSAKQNQDAIARLAAGEID 623 Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437 I+IGTH L + ++ L L+++DE+ RFGV + KL Q VL +TATPIPRTL + Sbjct: 624 IVIGTHKLLGKGVSFHNLALLVIDEEQRFGVTHKEKLKQFKANVDVLTLTATPIPRTLHM 683 Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKK 496 G +S I P R+ IKT +I DE++ + L G + Y++ ++E Sbjct: 684 AMGGIKKMSVIETPPKDRRAIKTEVIEFQ--DEILRQGLMREFHRGGQIYFLHNRVE--- 738 Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556 ++ R L + +A+ HG+MS+ E VM F G +L+ ++++E G+D Sbjct: 739 --TINAIALRVQGLIPE--ARVAVAHGQMSEAQLERVMLEFSAGEHDVLVCSSIVESGLD 794 Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNT 614 V A+ I I A+ GLAQL+QLRGRVGR E + C L+ P L + R+ V++ Sbjct: 795 VPRANTIFINRADTLGLAQLYQLRGRVGRSERRAFCYLIIPPFDTLHDVAQKRIRVIEEL 854 Query: 615 E---DGFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R G +LG++QSG Sbjct: 855 SYLGAGFRLATYDLEIRGAGNLLGMEQSG 883 >gi|167039252|ref|YP_001662237.1| transcription-repair coupling factor [Thermoanaerobacter sp. X514] gi|300913892|ref|ZP_07131209.1| transcription-repair coupling factor [Thermoanaerobacter sp. X561] gi|307725423|ref|YP_003905174.1| transcription-repair coupling factor [Thermoanaerobacter sp. X513] gi|166853492|gb|ABY91901.1| transcription-repair coupling factor [Thermoanaerobacter sp. X514] gi|300890577|gb|EFK85722.1| transcription-repair coupling factor [Thermoanaerobacter sp. X561] gi|307582484|gb|ADN55883.1| transcription-repair coupling factor [Thermoanaerobacter sp. X513] Length = 1165 Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 154/462 (33%), Positives = 240/462 (51%), Gaps = 36/462 (7%) Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFK 248 DL+QK P+ NP K EW R+ E LA + L ++Q Sbjct: 551 DLVQKYVGPT--------DNPPKLNKLGGSEWLKAKRKAKKAVEDLAKDLIQLYAKRQMV 602 Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 K G + + ++ P+ T+ Q IK+I +DM + M R+L GDVG GKT Sbjct: 603 K--GHAFSPDTPWQKEFEEQFPYEETEDQLRCIKEIKEDMEKDRPMDRLLCGDVGYGKTE 660 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHY-EFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 VAL A AV G Q + P ILA QHY FI+++ + + +E+++ + K Sbjct: 661 VALRAAFKAVADGKQVAFLCPTTILAYQHYANFIERFKE-FPVKIEMLSRFRTPKEQSKI 719 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 ++ +A G II+GTH L Q+ I++ L L+I+DE+ RFGV + K+ + VL ++ Sbjct: 720 IKELAEGNIDIIVGTHRLLQNDIKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLS 779 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKA 485 ATPIPRTL ++ +G D+S + P R P++T ++ N I + I R ++ G + Sbjct: 780 ATPIPRTLHMSLIGIRDMSVLENPPEDRFPVETYVVEFNEELIKDAILR---EIARGGQV 836 Query: 486 YWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y++ ++ EK S + +V +A+ HG+M + E VM F NG Sbjct: 837 YFVYNRVNGIEKMASFVKDLVP---------GCRVAVAHGQMEESQLEKVMIDFLNGEYD 887 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LS 601 +L++TT+IE G+D+ + + II+ +A+ GL+QL+QLRGRVGR ++ Y LS Sbjct: 888 VLVSTTIIETGLDIPNVNTIIVYDADKLGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLS 947 Query: 602 KNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640 + + RL +K TE GF IA DL+ R G +LG +Q G Sbjct: 948 EVAEKRLEAIKEFTEFGSGFKIAMRDLEIRGAGNLLGAEQHG 989 >gi|302871262|ref|YP_003839898.1| transcription-repair coupling factor [Caldicellulosiruptor obsidiansis OB47] gi|302574121|gb|ADL41912.1| transcription-repair coupling factor [Caldicellulosiruptor obsidiansis OB47] Length = 1143 Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 141/429 (32%), Positives = 235/429 (54%), Gaps = 18/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW ++ E++A + L ++Q + G + + ++ P++ T+ Q Sbjct: 554 EWQKQKQKVRKSLEIVAKDLVELYAKRQLGQ--GFKFSKDTVWQKEFEEKFPYTETEGQL 611 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 AI++I +DM + M RIL GDVG GKT VA+ A AV Q ++ P ILAQQHY Sbjct: 612 QAIEEIKRDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVLVPTTILAQQHY 671 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 ++ + +E+++ + ++K ++ + G I+IGTH L +++ L L+ Sbjct: 672 MTFSARMKDFPVTIEVLSRLKSETQQKKIIKGLRKGTIDIVIGTHRLLSSDVKFKDLGLL 731 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+H+FGV+ + K+ + T VL +TATPIPRTL + LG D+S I + P R P+ Sbjct: 732 IIDEEHKFGVEAKEKIKKLKTNVDVLTLTATPIPRTLNMALLGIRDLSVIEDPPEDRFPV 791 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T ++ N I E I LK + S G + +++ ++++ +E V + +L + Sbjct: 792 QTFVLEYNERIIKEAI--LKEI-SRGGQVFYLYNRVKDIQE-----VAAKLQNLVGD-SV 842 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 IA HG+M + + E V+ F G +L+ TT+IE G+D+ + + +I+E+++ GLAQL Sbjct: 843 KIACAHGQMEEEELEEVLIDFIEGRYDVLVCTTIIESGVDMPNVNTLIVEDSDRLGLAQL 902 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGRVGR ++ + LS+ + RL+ +K TE GF IA DL+ R G Sbjct: 903 YQLRGRVGRSSRLAYAYFTFRKDKVLSEQAQKRLAAIKEFTELGSGFKIAMRDLEIRGAG 962 Query: 632 EILGIKQSG 640 I+G Q G Sbjct: 963 SIVGKLQHG 971 >gi|229021662|ref|ZP_04178248.1| Transcription-repair-coupling factor [Bacillus cereus AH1272] gi|228739637|gb|EEL90047.1| Transcription-repair-coupling factor [Bacillus cereus AH1272] Length = 1010 Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I +I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 448 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 507 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 508 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 567 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 568 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 627 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 628 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKAD 684 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 685 EISMLVP---------DARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIP 735 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 736 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTE 795 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 796 LGSGFKIAMRDLSIRGAGNLLGAEQHG 822 >gi|258513568|ref|YP_003189790.1| transcription-repair coupling factor [Desulfotomaculum acetoxidans DSM 771] gi|257777273|gb|ACV61167.1| transcription-repair coupling factor [Desulfotomaculum acetoxidans DSM 771] Length = 1197 Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 150/432 (34%), Positives = 231/432 (53%), Gaps = 25/432 (5%) Query: 219 EWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EW+ ++ + A E+ +AL R+ + G P + + Q+ P+ T Q Sbjct: 603 EWSRVKSKVKEAVKEMAQELLALYAAREAVQ---GHPFSKDTVWQQEFEAAFPYEETPDQ 659 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 AI+++ DM + M R+L GDVG GKT VAL A AV G Q ++ P ILAQQH Sbjct: 660 LKAIEEVKADMERPRPMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVAVLVPTTILAQQH 719 Query: 338 YEFIK----KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 + K KY N ++ IT +R+ ++ + GQ I+IGTH L QD I++ Sbjct: 720 FNTFKERFAKYPVNIAMLSRFITAR----RQRQIVQELLLGQVDIVIGTHRLVQDDIKFK 775 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L LV+VDE+ RFGV + KL Q VL +TATPIPRTL ++ +G D S + P Sbjct: 776 DLGLVVVDEEQRFGVTHKEKLKQLRQNVDVLTLTATPIPRTLHMSIVGVRDTSLLETPPE 835 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 R P++T ++ + V E ++ L G + Y++ ++ ++ V L Sbjct: 836 DRIPVQTYVLEEEPVI-VREAIRRELGRGGQVYYVHNRV-----ADLDRVAGWLKGLVPD 889 Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 ++IAI HG+M + E+VM F N +L+ TT+IE G+D+ + + +I+++A++ GL Sbjct: 890 --AAIAIGHGQMKEDRLENVMLDFMNKKFDILLCTTIIETGLDIQNVNTLIVKDADYMGL 947 Query: 574 AQLHQLRGRVGRGEEI--SSCILLYHPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQR 628 AQL+QLRGRVGR + + C +S+ + RLS ++ TE G+ IA DL+ R Sbjct: 948 AQLYQLRGRVGRTNRLAYAYCTFRGDKVMSELAEKRLSAVREFTEFGSGYKIAMRDLEIR 1007 Query: 629 KEGEILGIKQSG 640 G ILG +Q G Sbjct: 1008 GAGNILGPEQHG 1019 >gi|227548210|ref|ZP_03978259.1| possible transcription-repair coupling factor [Corynebacterium lipophiloflavum DSM 44291] gi|227079684|gb|EEI17647.1| possible transcription-repair coupling factor [Corynebacterium lipophiloflavum DSM 44291] Length = 1191 Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 132/429 (30%), Positives = 222/429 (51%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W S R+ A +A ++ L ++Q + ++ ++ N PF T+ Q Sbjct: 577 DWRSTKRKARAAVREIAAELVQLYAKRQAAPGHAFAPDTPWQV--EMEDNFPFVETEDQL 634 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 AI + +DM + M R++ GDVG GKT VA+ A AV+ G Q ++ P +LAQQH+ Sbjct: 635 LAIDAVKEDMEKPTPMDRVIVGDVGFGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHF 694 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + ++ ++ L +A G ++IGTH L +Q+ L L+ Sbjct: 695 STFSTRMDGFGVTIRELSRFTSAKESKETLAGLADGSVDVVIGTHRLLATGVQWKNLGLI 754 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 +VDE+ RFGV+ + + + VL MTATPIPRTL ++ G +++ IT P R P+ Sbjct: 755 VVDEEQRFGVEHKEHIKALKSHVDVLTMTATPIPRTLEMSLTGIREMTSITTPPEDRHPV 814 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516 T + P ++ ++ L + ++I ++ EK R +V + Sbjct: 815 LTYVGP-QEDKQIAAAIRRELLRDGQIFYIHNKVADIEKAARRVRDLVPE---------A 864 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 + + HG+MS+ E + F N +L+ TT++E G+D+ +A+ +I+ENA++ GL+QL Sbjct: 865 RVVVAHGQMSEQLLEQTVQGFWNREYDVLVCTTIVETGLDIANANTLIVENAQNMGLSQL 924 Query: 577 HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 HQLRGRVGR + + LY L++ SY RL+ + D G +A++DL+ R G Sbjct: 925 HQLRGRVGRSRDRAYAYFLYPKDKTLTETSYDRLATIAQNNDLGSGIAVAQKDLEMRGAG 984 Query: 632 EILGIKQSG 640 +LG +QSG Sbjct: 985 NVLGAEQSG 993 >gi|13235409|emb|CAC33609.1| Mfd protein [Rickettsia montanensis] Length = 1121 Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 154/470 (32%), Positives = 254/470 (54%), Gaps = 42/470 (8%) Query: 237 QIALLLMRKQFKKEIG--IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 +IAL L++ K+++ P+ + + K N PFS T+ Q +AI DI +D+ M Sbjct: 540 EIALHLIQIAAKRKLSSSAPVEFDLEEYDKFCANFPFSETEDQLTAINDIKEDLRNGMLM 599 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHY----EFIKKYTQ 346 R++ GDVG GKT VA+ A+ ++ Q I+ P IL QH+ E K + Sbjct: 600 DRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAIVVPTTILCSQHFSRFIERFKGFGL 659 Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 N + + +I+ + R + + G+ +IIIGTH+L +I+++ L L+I+DE+ F Sbjct: 660 NIKQLSSVISSKEAKIIRSE----LESGKINIIIGTHSLLHKNIKFFNLKLLIIDEEQHF 715 Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466 GV Q+ L ++ HVL M+ATPIPRTL ++ G ++S I P R ++T ++P Sbjct: 716 GVGQKEFLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTSVMP-- 773 Query: 467 RIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAII 521 D VI R +L E G +++++ P+I+ E E + +V S I Sbjct: 774 -FDPVIIR-DALLREHFRGGRSFYVVPRIKDIEDIEKQLKQIVPEL---------SYKIA 822 Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581 HG+M+ + VM F G +L++TT+IE GID+ +A+ +II A+ GL+QL+QLRG Sbjct: 823 HGKMAPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANTMIIHKADMLGLSQLYQLRG 882 Query: 582 RVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGI 636 R+GRG+ L+ H ++ +S RL +++N+ GF IA D+ R G ++G Sbjct: 883 RIGRGKMRGYAYLMVASHKKMTSHSLRRLEIIQNSCALGSGFTIASHDMDLRGFGNLIGE 942 Query: 637 KQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQDPDLTSVR-GQSIRI 683 +QSG K + EL+ +LE IA + I+++ P + ++ G S+ I Sbjct: 943 EQSGQIKEV--GTELYQEMLEEQIAIFKDEPIVSEQPFIPTINLGLSVFI 990 >gi|188996867|ref|YP_001931118.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188931934|gb|ACD66564.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 938 Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 133/398 (33%), Positives = 226/398 (56%), Gaps = 17/398 (4%) Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313 P+ + ++ K R PF T Q AIKDI D + M R++ GDVG GKT VA+ Sbjct: 393 PLKTDDELISKFEREFPFVETPDQIKAIKDIKSDFLKPKPMERLICGDVGFGKTEVAIRG 452 Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373 + +V G QA+++ P +LA QHY+ +K+ + IIV+ ++ + ++ Sbjct: 453 IFISVINGYQALLLVPTTVLAYQHYKKLKERLEPYGIIVKNLSRLKSKKENDNTIKAFEE 512 Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433 G+ +++ TH + ++ + KL L+++DE+HRFGV+ + K+ Q + L +TATPIPR Sbjct: 513 GKIDVLVATHKILHTNLSFNKLELLVIDEEHRFGVKAKEKIRQIRESVDTLYLTATPIPR 572 Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQI 492 TL + G DIS + P GR IKT + N +E+I++ ++ + + +++ +I Sbjct: 573 TLNMALSGLKDISVLNTPPEGRYEIKTYV--SNFDEELIKKAIEFEIDRNGQVFYLHNRI 630 Query: 493 EEKKESN--FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550 E KE+ +++V++ + + IHG+M + E + F G +LI+T++ Sbjct: 631 ETIKETADFLKNLVKK---------AKVDFIHGKMKPSEIEKKIIDFLEGKTNVLISTSI 681 Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL-S 609 IE GID+ A+ +I++ A+ FGLAQL+ LRGRVGRG + C L+ ++K++ R+ + Sbjct: 682 IETGIDIPTANTLIVDRADLFGLAQLYHLRGRVGRGNIQAYCYLIVPKEITKDAKRRIDT 741 Query: 610 VLKNTE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645 +LK T G ++ ED++ R G ILG++QSG K L Sbjct: 742 LLKLTRPGSGLKVSIEDMQIRGPGNILGVEQSGFIKSL 779 >gi|78779345|ref|YP_397457.1| transcriptional-repair coupling factor [Prochlorococcus marinus str. MIT 9312] gi|78712844|gb|ABB50021.1| transcription-repair coupling factor [Prochlorococcus marinus str. MIT 9312] Length = 1174 Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 136/425 (32%), Positives = 235/425 (55%), Gaps = 18/425 (4%) Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317 +G ++ + P+ PT Q +A+K+I DM M R++ GDVG GKT VA+ A+ A Sbjct: 599 DGPWQDELEESFPYQPTPDQITAVKEIKSDMESDKPMDRLVCGDVGFGKTEVAVRAIFKA 658 Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377 + +G Q +++AP ILAQQH+ I I V ++ R++ + + + Sbjct: 659 ITSGKQVILLAPTTILAQQHWRTINNRFSPYPIKVSLLNRFKTVNERKEIYAGLKNNKID 718 Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437 +++ TH + I+ L L+++DE+ RFGV+Q+ K+ + T VL ++ATPIPRTL + Sbjct: 719 LVVATHQILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKKIKTNIDVLTLSATPIPRTLYM 778 Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497 + G +S + P R+ IKT + I+ +D + + L G + +++ P+I Sbjct: 779 SLSGLRQMSLLNTPPPSRRSIKTYLSEID-MDVIRTAINQELDRGGQIFYVLPRI----- 832 Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557 S+ V + ++ + IA HG+M++ + E+ M SF NG L+I TT+IE G+D+ Sbjct: 833 SDIDQAVNKLKNMFPNLKFIIA--HGQMNETELENSMISFNNGEVDLMICTTIIESGLDI 890 Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK---NSYTRLSVLKNT 614 + IIIE++ FGL+QL+QLRGRVGR I + L++P L+K ++ RL +K+ Sbjct: 891 PKVNTIIIEDSHKFGLSQLYQLRGRVGRS-GIQAHAWLFYPNLNKINDSAKQRLKAIKDF 949 Query: 615 ED---GFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILT 668 + G+ +A +D++ R G +LG +QSG + + LH+++ EI+ ++ + Sbjct: 950 SELGSGYQLAMKDMEIRGVGSLLGEEQSGKVNAIGYDLYIEMLHEAISEISGQEIPEVSD 1009 Query: 669 QDPDL 673 DL Sbjct: 1010 TQIDL 1014 >gi|295093547|emb|CBK82638.1| transcription-repair coupling factor [Coprococcus sp. ART55/1] Length = 1188 Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 131/396 (33%), Positives = 210/396 (53%), Gaps = 17/396 (4%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G + + + ++ P++ T Q AI+D+ DM M R++ GDVG GKT VA+ Sbjct: 611 GFAYSPDSEWQKEFEETFPYTETDDQLKAIEDVKADMESHKIMDRLVCGDVGFGKTEVAI 670 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A AV Q + P ILA+QHYE + ++ + V ++ Q + L + Sbjct: 671 RAAFKAVGDSKQVAYLVPTTILAEQHYETFTERMKDYPVTVRLLCRFCTQKEIKSTLREL 730 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 G+ I+IGTH L +++ L L+I+DE+ RFGV + K+ + T VL +TATPI Sbjct: 731 KEGKVDIVIGTHRLLSKDVEFKNLGLLIIDEEQRFGVNHKEKIKEMKTNVDVLTLTATPI 790 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491 PRTL ++ +G D+S + E P R+PI+T ++ +R + E + L+ + Y++ + Sbjct: 791 PRTLHMSLVGIRDMSLLEEPPVDRRPIQTYVMEYDR-ELAREAIARELARHGQVYYVYNR 849 Query: 492 IE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549 +E E+ + RS+V N + HG+M E +M F +L+ TT Sbjct: 850 VEGIERFADDVRSLVPYAN---------VEFAHGQMDGRTLEDIMYRFNKKEIDVLVCTT 900 Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTR 607 +IE G+D+ +A+ III +A FGLAQL+QLRGRVGR + + + Y + +S+ + R Sbjct: 901 IIETGLDIPNANTIIIHDANLFGLAQLYQLRGRVGRSDRSAFAFMFYRRNKMISEVAEKR 960 Query: 608 LSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 L +K D G +++ DL R G +LG QSG Sbjct: 961 LRAIKEYTDLGSGVKVSKADLNIRGAGSVLGESQSG 996 >gi|254724194|ref|ZP_05185979.1| transcription-repair coupling factor [Bacillus anthracis str. A1055] Length = 1176 Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I++I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 614 QEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 734 HRILSKDVTYKDLGLLISDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 850 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988 >gi|83858282|ref|ZP_00951804.1| transcription-repair coupling factor [Oceanicaulis alexandrii HTCC2633] gi|83853105|gb|EAP90957.1| transcription-repair coupling factor [Oceanicaulis alexandrii HTCC2633] Length = 1162 Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 140/402 (34%), Positives = 222/402 (55%), Gaps = 27/402 (6%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 P+ T Q +AI D+ D ++ M R++ GDVG GKT VAL A A +G Q I+A Sbjct: 609 FPYVETDDQLNAIDDVFSDFAKGRPMDRLICGDVGFGKTEVALRAAFVAAMSGRQVAIVA 668 Query: 329 PIGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384 P +LA+QH+ E K + + + +++ A R++ +A G I+IGTHA Sbjct: 669 PTTLLARQHFKTFEERFKGWPVKVRQLSRLVSTKEATATRKE----LADGTCEIVIGTHA 724 Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444 + ++++ L L+++DE+ RFGV+ + +L + T HVL +TATPIPRTL L+ G D Sbjct: 725 ILAKTVKFADLGLLVIDEEQRFGVKHKERLKELKTDVHVLTLTATPIPRTLQLSMAGIRD 784 Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSV 503 +S I P R ++T + P + + V E L G ++Y++ P+I + ++ ++F Sbjct: 785 LSIIATPPVDRLAVRTYVTPFDSV-TVREALLRERYRGGQSYYVAPRISDLEDIASF--- 840 Query: 504 VERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 L E S I HG+M+ E +M +F G +L++TT++E GID+ A+ Sbjct: 841 ------LREQVPEVSFVIAHGQMAGGQLEDIMTAFYEGRYDVLVSTTIVESGIDIPTANT 894 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---G 617 +II A+ FGLA L+QLRGRVGR + + L + L+ + RL +L++ + G Sbjct: 895 MIIHRADMFGLAPLYQLRGRVGRAKARAYAYLTTPANQKLTATADKRLKILQSLDSLGAG 954 Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 F +A DL R G +LG +QSG K + EL+ S+LE A Sbjct: 955 FTLASHDLDLRGGGNLLGEEQSGHIKDVGV--ELYQSMLEEA 994 >gi|257092702|ref|YP_003166343.1| transcription-repair coupling factor [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045226|gb|ACV34414.1| transcription-repair coupling factor [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 1141 Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 140/376 (37%), Positives = 202/376 (53%), Gaps = 15/376 (3%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q +AI +++DM M R++ GDVG GKT VAL A AV G Q ++ P Sbjct: 597 FEETADQAAAINAVIEDMQSGRPMDRLVCGDVGFGKTEVALRAAFCAVAGGRQVAVLCPT 656 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +L +QH++ + + + ++ +AL +A G+ IIIGTH L Q + Sbjct: 657 TLLCEQHHQTFSDRFADWPVSIAELSRFKTAREASQALRELADGKLDIIIGTHRLLQKDV 716 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 Q+ +L LV++DE+HRFGV+Q+ L VL +TATPIPRTL ++ G D S I Sbjct: 717 QFSRLGLVVIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMSLEGLRDFSVIAT 776 Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P R IKT + + D +I E L G + Y++ +++ + N R + + Sbjct: 777 APQKRLAIKTFVTRFS--DGIIREALLREFKRGGQVYFLHNEVDTIE--NMRDKLGKL-- 830 Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 L E + I + HG++ + D E VM F +L+ TT+IE GID A+ III AE Sbjct: 831 LPE---ARIVVGHGQLKERDLERVMRDFTQRRANVLLCTTIIETGIDNPHANTIIINRAE 887 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEED 624 FGLAQLHQLRGRVGR + LL H L+K + RL ++ ++ GF +A D Sbjct: 888 KFGLAQLHQLRGRVGRSHHQAYAYLLTHDETALNKQARQRLEAIQMMDELGAGFYLAMHD 947 Query: 625 LKQRKEGEILGIKQSG 640 L+ R GE+LG QSG Sbjct: 948 LEIRGAGEVLGDSQSG 963 >gi|82701772|ref|YP_411338.1| transcription-repair coupling factor [Nitrosospira multiformis ATCC 25196] gi|82409837|gb|ABB73946.1| transcription-repair coupling factor [Nitrosospira multiformis ATCC 25196] Length = 1156 Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 159/463 (34%), Positives = 238/463 (51%), Gaps = 33/463 (7%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q +G ++ + + + F T Q +AI ++ D++ M R++ Sbjct: 577 LLNIYAQRAARVGHAFRLKEQDYEAFVEGFGFEETPDQATAIAAVIDDLTSARPMDRLIC 636 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VAL A AV G Q ++ P +LA+QH++ ++ +I E + Sbjct: 637 GDVGFGKTEVALRAAFVAVADGRQVAVLVPTTLLAEQHFQ---NFSDRFGLIAEEWPVKI 693 Query: 360 PQAHR-------RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 + R +AL +A GQ I+IGTH L Q +++ L LVI+DE+HRFGV+ + Sbjct: 694 AELSRFRSGKEQAQALAGLADGQIDIVIGTHKLIQKGVRFKNLGLVIIDEEHRFGVRHKE 753 Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 +L + VL +TATPIPRTL L+ G D S I P R IKT +NR E I Sbjct: 754 QLKSLRSEVDVLTLTATPIPRTLALSLEGLRDFSVIATAPQRRLAIKTF---VNRFSEGI 810 Query: 473 ERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530 R + L G + Y++ ++ S +++ ++ L + I I HG+M + + Sbjct: 811 IREACLRELKRGGQIYFLHNEV-----STIQTMHDKLARLLPE--ARIGIAHGQMREREL 863 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 E VM F LL+ TT+IE GIDV A+ III A+ FGLAQLHQLRGRVGR + Sbjct: 864 EHVMKDFYQQRFNLLLCTTIIETGIDVPTANTIIIHRADKFGLAQLHQLRGRVGRSHHQA 923 Query: 591 SCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG-MPKF 644 LL L + RL +++ E+ GF +A DL+ R GE+LG QSG M + Sbjct: 924 YAYLLVPEEEALGTQARKRLEAVQSMEELGAGFYLAMHDLEIRGAGEVLGESQSGEMQEI 983 Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687 L+ ++LE A + K ++PD+ G + I L++ Sbjct: 984 GFT---LYANMLEAAVRSLKE--GKEPDMQHPLGVATEINLHV 1021 >gi|297538863|ref|YP_003674632.1| transcription-repair coupling factor [Methylotenera sp. 301] gi|297258210|gb|ADI30055.1| transcription-repair coupling factor [Methylotenera sp. 301] Length = 1142 Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 152/431 (35%), Positives = 224/431 (51%), Gaps = 21/431 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 + PF T Q AI+++++DM M R++ GDVG GKT VAL A AV G Sbjct: 591 ETFCEGFPFEETPDQLEAIENVIKDMQSGRPMDRLVCGDVGFGKTEVALRAAFVAVMGGR 650 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LA+QH+ K I + I+ +++AL + GQ IIIGT Sbjct: 651 QVAVLVPTTLLAEQHFNNFKDRFAEWPIKIAEISRFRTAKEQKEALAGLEAGQIDIIIGT 710 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L LV++DE+HRFGV+Q+ +L +L +TATPIPRTL + G Sbjct: 711 HRLIQKDVKFKNLGLVVLDEEHRFGVRQKEQLKALRAEVDILTLTATPIPRTLSMAMEGL 770 Query: 443 IDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500 + S IT P R IKT + I E + R G + Y++ +++ + Sbjct: 771 REFSIITTPPQKRLSIKTFHTDYSEGIIREAVMR---EFKRGGQVYFLHNEVDTIH--SM 825 Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560 R +ER + IA+ HG++ + + E VM F N LL+ TT+IE GIDV A Sbjct: 826 REKLERIVP-----DARIAVAHGQLRERELEHVMRDFYNQRYNLLLCTTIIETGIDVPTA 880 Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616 + II+ A+ FGLAQ+HQLRGRVGR + LL P ++ + RL ++ ED Sbjct: 881 NTIILNKADMFGLAQMHQLRGRVGRSHHQAYAYLLTDPDRKITVQAQKRLDAIQLMEDLG 940 Query: 617 -GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 GF +A DL+ R GE+LG QSG + + L+ +L A K K ++PDL + Sbjct: 941 AGFHLAMHDLEIRGAGELLGDSQSGEMQEIGFH--LYSDMLNHAVKQLK--AGKEPDLNA 996 Query: 676 VRGQSIRILLY 686 G + I L+ Sbjct: 997 PLGVTTEINLH 1007 >gi|229148463|ref|ZP_04276720.1| Transcription-repair-coupling factor [Bacillus cereus m1550] gi|228635005|gb|EEK91577.1| Transcription-repair-coupling factor [Bacillus cereus m1550] Length = 1176 Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I +I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 614 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQH+E I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 674 QVAILVPTTILAQQHHETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N I E IER L+ G + Y++ ++E E+K Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALIREAIER---ELARGGQVYFLYNRVEDIERKAD 850 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988 >gi|300857300|ref|YP_003782284.1| putative transcription-repair coupling factor [Clostridium ljungdahlii DSM 13528] gi|300437415|gb|ADK17182.1| predicted transcription-repair coupling factor [Clostridium ljungdahlii DSM 13528] Length = 1173 Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 133/378 (35%), Positives = 218/378 (57%), Gaps = 17/378 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q + I+DI QDM M R+L GDVG GKT VA+ A AV G Q + P Sbjct: 625 PYEETPDQLTTIQDIKQDMESDKVMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFLVP 684 Query: 330 IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 ILAQQHY F+++++ + + +++I+ A ++ +++ + G I+IGTH + Q Sbjct: 685 TTILAQQHYNNFVQRFS-DFPVKIDMISRFRTTAQQKASIKAVKVGDVDILIGTHRILQK 743 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 +Q+ L L+I+DE+ RFGV + K+ + VL ++ATPIPRTL ++ +G DIS I Sbjct: 744 DVQFKDLGLLIIDEEQRFGVSHKEKIKKIRKNVDVLTLSATPIPRTLHMSLVGARDISVI 803 Query: 449 TEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R PI+T ++ N D++I + + ++ G + Y++ ++E KE S + + Sbjct: 804 ETPPEERYPIQTYVVEYN--DQLIRDAILREINRGGQVYFVYNRVESIKE--MASYIAKL 859 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + +A+ HG+M + + E+++ F +L+ATT+IE G+D+ + + +II + Sbjct: 860 IP-----EAKVAVAHGQMQERELENIIVDFMKNEYNVLVATTIIETGMDIQNVNTMIIYD 914 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622 A+ GL+QL+QLRGRVGR ++ C L Y L++ + RL +K TE GF IA Sbjct: 915 ADKMGLSQLYQLRGRVGRTNRMAYCYLSYRRDKVLTEVAEKRLKAIKEFTELGSGFKIAL 974 Query: 623 EDLKQRKEGEILGIKQSG 640 +DL+ R G ++G Q G Sbjct: 975 KDLEIRGAGNMMGASQHG 992 >gi|228970242|ref|ZP_04130902.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228789477|gb|EEM37396.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|326937845|gb|AEA13741.1| transcription-repair coupling factor [Bacillus thuringiensis serovar chinensis CT-43] Length = 1176 Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I +I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 614 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTIDIVIGT 733 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKAD 850 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988 >gi|229170904|ref|ZP_04298507.1| Transcription-repair-coupling factor [Bacillus cereus MM3] gi|228612570|gb|EEK69789.1| Transcription-repair-coupling factor [Bacillus cereus MM3] Length = 1176 Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I +I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 614 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKAD 850 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 851 EISMLVP---------DARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIP 901 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988 >gi|326803014|ref|YP_004320832.1| transcription-repair coupling factor [Aerococcus urinae ACS-120-V-Col10a] gi|326650035|gb|AEA00218.1| transcription-repair coupling factor [Aerococcus urinae ACS-120-V-Col10a] Length = 1183 Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 130/379 (34%), Positives = 212/379 (55%), Gaps = 19/379 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +IK+I DM ++ M R+L GDVG GKT VA+ A A+ G Q + P Sbjct: 623 PYPETDDQLRSIKEIKADMEKEKPMDRLLVGDVGFGKTEVAMRAAFKAMLDGKQVAFLVP 682 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHYE + + ++ +++++ A ++ ++ + G ++IGTH L Sbjct: 683 TTVLAQQHYETMLERFKDYPFTIDLLSRFRSPAEQKHVIKGLKEGSVQLVIGTHRLLSKD 742 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ L L++VDE+ RFGV+ + +L VL +TATPIPRTL ++ +G D+S I Sbjct: 743 IKFLDLGLLVVDEEQRFGVKAKERLKALRKNVDVLTLTATPIPRTLNMSMMGVRDLSVIE 802 Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 PA R P++T ++ N I + IER L+ + +++ +N +++ E+ Sbjct: 803 TPPANRFPVQTYVMEQNYGAIRDAIER---ELARNGQVFYLF--------NNVQNIQEKA 851 Query: 508 NSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 N + E + +AI HG+M E V+ F G +L+ TT+IE GID+ + + +++E Sbjct: 852 NFIEELVPKARVAIAHGQMHANQLEEVLMDFLAGDDDVLVTTTIIETGIDMPNVNTLLVE 911 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIA 621 +A+ GL+ L+QLRGRVGR ++ +Y P L++ S RL+ LK+ + GF IA Sbjct: 912 DADRMGLSTLYQLRGRVGRSNRVAYAYFMYRPDKALNEASEKRLTALKDFTELGAGFKIA 971 Query: 622 EEDLKQRKEGEILGIKQSG 640 DL R G +LG +Q G Sbjct: 972 MRDLSIRGAGNLLGQEQHG 990 >gi|257066460|ref|YP_003152716.1| transcription-repair coupling factor [Anaerococcus prevotii DSM 20548] gi|256798340|gb|ACV28995.1| transcription-repair coupling factor [Anaerococcus prevotii DSM 20548] Length = 1170 Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 136/379 (35%), Positives = 212/379 (55%), Gaps = 19/379 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T SQ +I++I DM M R+L GDVG GKT VA+ A A+ G Q + P Sbjct: 622 PYEETYSQIRSIEEIKNDMESDKPMDRLLCGDVGFGKTEVAIRAAFKAIMDGYQVAFLVP 681 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILA QHYE IK+ + V++I+ P + + ++ + G+ +IIGTH L Sbjct: 682 TTILANQHYETIKRRFDKFPVNVQVISRFNPGSKNKLIIKDLKAGKVDLIIGTHRLLSKD 741 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + Y L L+I+DE+ RFGV+ + KL + ++ VL ++ATPIPRTL ++ G D+S + Sbjct: 742 VGYKNLGLLIIDEEQRFGVKHKEKLKELKSSLDVLTLSATPIPRTLQMSLSGIRDLSTLD 801 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 E P R P+ T ++ + I + IER L+ + Y++ ++ + + + + Sbjct: 802 EAPEERMPVNTYVLEYDNGIIKQAIER---ELNRNGQVYFVYNRVND--------IEKLY 850 Query: 508 NSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 N L E ++IAIIHGR+S E M F +G +L++TT+IE G+D+ + + III Sbjct: 851 NHLIELVPDANIAIIHGRISPKQIEKTMLEFIDGEIDILLSTTIIETGMDISNVNTIIIY 910 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIA 621 +++ GL QL+QL+GR+GRG S Y LS+ S RL +++ D G+ IA Sbjct: 911 DSDMMGLGQLYQLKGRIGRGNRSSYAYFTYRTGKILSEISEKRLKSIRDFSDFGSGYKIA 970 Query: 622 EEDLKQRKEGEILGIKQSG 640 +DL+ R G +LG QSG Sbjct: 971 MKDLELRGAGNLLGESQSG 989 >gi|260427548|ref|ZP_05781527.1| transcription-repair coupling factor [Citreicella sp. SE45] gi|260422040|gb|EEX15291.1| transcription-repair coupling factor [Citreicella sp. SE45] Length = 1160 Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 140/413 (33%), Positives = 230/413 (55%), Gaps = 24/413 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+S T Q SAI+D+L DM+ N M R++ GDVG GKT VA+ A A +G Q ++AP Sbjct: 603 PYSETDDQLSAIEDVLGDMTSGNPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVAVIAP 662 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHY+ + + + V ++ + + + + I G I +GTHAL Sbjct: 663 TTLLARQHYKSFAERFRGFPLNVAPLSRFVSASEAARTRDGITKGTVDIAVGTHALLAKG 722 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ L L+I+DE+ FGV + +L Q + HVL +TATPIPRTL L+ G D+S I Sbjct: 723 IRFQNLGLLIIDEEQHFGVNHKERLKQLRSDIHVLTLTATPIPRTLQLSLSGVRDLSIIG 782 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R I+T ++ D V R + +L E G +++++ P+I + E +E Sbjct: 783 TPPVDRLSIRTY---VSEFDPVTIR-EALLREHYRGGQSFYVVPRISDLPE------IEE 832 Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 F L E S + HG+M+ + + M++F +G +L+ATT++E G+D+ A+ +++ Sbjct: 833 F--LREQVPEVSYVVAHGQMAAGELDEKMNAFYDGKYDVLLATTIVESGLDIPTANTMVV 890 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 A+ FGL+QL+Q+RGRVGR + + + P L+ + RL VL + + GF + Sbjct: 891 HRADMFGLSQLYQIRGRVGRSKTRAYAYMTTKPRAKLTDTAEKRLRVLGSLDTLGAGFTL 950 Query: 621 AEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQD 670 A +DL R G +LG +QSG + + + Q L +++ +I + + +L QD Sbjct: 951 ASQDLDIRGAGNLLGEEQSGQMRDVGYELYQQMLEEAIAKIKSGEMEGLLEQD 1003 >gi|228963154|ref|ZP_04124324.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar sotto str. T04001] gi|228796539|gb|EEM43977.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar sotto str. T04001] Length = 1067 Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I +I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 505 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 564 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 565 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTIDIVIGT 624 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 625 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 684 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 685 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKAD 741 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 742 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 792 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 793 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 852 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 853 LGSGFKIAMRDLSIRGAGNLLGAEQHG 879 >gi|149177449|ref|ZP_01856053.1| transcription-repair coupling factor [Planctomyces maris DSM 8797] gi|148843782|gb|EDL58141.1| transcription-repair coupling factor [Planctomyces maris DSM 8797] Length = 1112 Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 149/463 (32%), Positives = 242/463 (52%), Gaps = 19/463 (4%) Query: 210 HNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269 H PR +K + +++ A + + +L ++ Q + GI + ++ + Sbjct: 503 HVPRLSKLGTKSWASKKEKAAEAVRDMASDMLRLQAQRSGQPGISYPPDSHWQKEFEASF 562 Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P++ T Q AI D+ DM + M R++ GDVG GKT VA+ A A++AG Q ++ P Sbjct: 563 PYTETSDQLHAISDVRHDMERAQPMDRLICGDVGYGKTEVAIRAAFKAIDAGKQVAVLVP 622 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QH + + I +E ++ + +R LE +A G ++IGTH L Q Sbjct: 623 TTVLAEQHTRTFSERMADYPITIEGLSRFKSKKEQRAILEGMAAGSVDLVIGTHRLIQKD 682 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ L L+I+DE+ RFGV+ + L + VL ++ATP+PRTL ++ LG DIS +T Sbjct: 683 IKFKDLGLLIIDEEQRFGVEAKEMLKRLRLQIDVLTLSATPVPRTLHMSLLGIRDISNLT 742 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R PI+T I R D + R +V L+ + Y++ ++ + + +R Sbjct: 743 TAPRDRVPIETR---ITRFDPELIRHAMVRELNRNGQVYFVHNRVH-----DLQKYADRI 794 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + +SI I HG+M + + E+ M +F +G + + TT+IE G+D+ +A+ I I + Sbjct: 795 QQIVPE--ASIGIGHGQMKETELEAAMLNFVSGKVDIFVCTTIIESGLDIPNANTIFIHD 852 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622 A + GL+ LHQLRGRVGR + C LL L+ + RL ++ + GF IA Sbjct: 853 AGNHGLSDLHQLRGRVGRSHHRAYCYLLLRDGQMLTPIAAKRLKAIEEYSELGAGFKIAM 912 Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665 DL+ R G ILG +QSG EL+ LLE A + K+ Sbjct: 913 RDLEIRGAGNILGTEQSG--HIAAVGYELYCQLLENACRKLKN 953 >gi|229015456|ref|ZP_04172457.1| Transcription-repair-coupling factor [Bacillus cereus AH1273] gi|228745840|gb|EEL95841.1| Transcription-repair-coupling factor [Bacillus cereus AH1273] Length = 1176 Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I +I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 614 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKAD 850 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 851 EISMLVP---------DARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIP 901 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTE 961 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988 >gi|260435284|ref|ZP_05789254.1| transcription-repair coupling factor [Synechococcus sp. WH 8109] gi|260413158|gb|EEX06454.1| transcription-repair coupling factor [Synechococcus sp. WH 8109] Length = 1203 Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 140/450 (31%), Positives = 241/450 (53%), Gaps = 24/450 (5%) Query: 237 QIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 ++AL L++ + ++ G +G ++ + P+ PT Q A D+ +DM ++ M Sbjct: 595 KVALDLVKLYAERQQAAGFAFPTDGPWQVEMEESFPYDPTPDQLKATADVKRDMERQEPM 654 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R++ GDVG GKT VA+ A+ A+ AG Q ++AP +LAQQH+ + + I V + Sbjct: 655 DRLVCGDVGFGKTEVAIRAIFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYPIKVAL 714 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 + + R+ L+ + G ++GTH L + +L L++VDE+ RFGV Q+ K+ Sbjct: 715 LNRFRTASERKSILDGLKQGTIDAVVGTHQLLSKGASFQELGLLVVDEEQRFGVNQKEKI 774 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 VL ++ATPIPRTL ++ G ++S IT P R+PIKT + ++ + V Sbjct: 775 KVLRKDVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPIKTHLASLD-PEAVRSA 833 Query: 475 LKVVLSEGKKAYWICPQIEEKKE--SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532 ++ L G + +++ P++E E + R+++ L + HG+M++ + E+ Sbjct: 834 IRQELDRGGQVFYVVPRVEGIDEVAAGLRAMLPGLKLL---------VAHGQMAEGELEN 884 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 M +F G +++ TT++E G+D+ + I+IE+A FGLAQL+QLRGRVGR I + Sbjct: 885 AMVAFNAGEADVMLCTTIVESGLDIPRVNTILIEDAHRFGLAQLYQLRGRVGR-SGIQAH 943 Query: 593 ILLYHP---PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK--- 643 L++P LS + RL ++ G+ +A D++ R G +LG++QSG + Sbjct: 944 AWLFYPGNASLSDTARQRLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVQQSGQMETIG 1003 Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDL 673 F + L +SL EI +D + DL Sbjct: 1004 FDLYMEMLQESLAEIQGQDIPSVEDTQVDL 1033 >gi|228937356|ref|ZP_04100003.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976812|ref|ZP_04137225.1| Transcription-repair-coupling factor [Bacillus thuringiensis Bt407] gi|228782908|gb|EEM31073.1| Transcription-repair-coupling factor [Bacillus thuringiensis Bt407] gi|228822314|gb|EEM68295.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 1183 Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I +I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 621 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 680 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 681 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTIDIVIGT 740 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 741 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 800 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 801 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKAD 857 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 858 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 908 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 909 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 968 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 969 LGSGFKIAMRDLSIRGAGNLLGAEQHG 995 >gi|298244980|ref|ZP_06968786.1| transcription-repair coupling factor [Ktedonobacter racemifer DSM 44963] gi|297552461|gb|EFH86326.1| transcription-repair coupling factor [Ktedonobacter racemifer DSM 44963] Length = 1169 Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 142/388 (36%), Positives = 219/388 (56%), Gaps = 23/388 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q++ P+ T Q AI+++ DM + M R++ GDVG GKT VAL A +V Sbjct: 619 QELEDAFPYEETPDQARAIEEVKADMERPKAMDRLVCGDVGYGKTEVALRAAFKSVLDQR 678 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P ILA QHY K+ + + VE+++ + +++ LE +A G+ IIIGT Sbjct: 679 QVAVLVPTTILALQHYNTFKERLKAYPVRVELLSRFRSEKEQKQVLEDLAMGKVDIIIGT 738 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q + ++ L L+IVDE+ RFGV + +L Q VL MTATPIPRTL ++ + Sbjct: 739 HRLLQKDVVFFHLGLLIVDEEQRFGVMHKERLKQLRNEVDVLTMTATPIPRTLHMSLVNL 798 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D+S I P R PI+T I + DE+I E + + G + +++ +++ + Sbjct: 799 RDMSVIETPPQERLPIRTTIREYD--DELIREAILREIDRGGQVFFVHNRVQ-----GIQ 851 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 + ++ L + I + HG+M++ E VM +F NG +LI+TT+IE G+D+ +A+ Sbjct: 852 MIAQKLQKLVPE--ARITVGHGQMNEDMLEKVMLNFTNGEFDVLISTTIIENGLDIPNAN 909 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY------TRL-SVLKNT 614 II+ NA +FGL+QL+QLRGRVGRG + Y SKN+ RL ++ + T Sbjct: 910 TIIVNNAAYFGLSQLYQLRGRVGRGTHQAYAHFFY----SKNARLTPIQEKRLRAIFEAT 965 Query: 615 E--DGFLIAEEDLKQRKEGEILGIKQSG 640 E GF IA +DL+ R G +LG +QSG Sbjct: 966 ELGAGFRIAMKDLEIRGAGNLLGGEQSG 993 >gi|226309690|ref|YP_002769584.1| transcription-repair coupling factor [Brevibacillus brevis NBRC 100599] gi|226092638|dbj|BAH41080.1| transcription-repair coupling factor [Brevibacillus brevis NBRC 100599] Length = 1182 Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 135/378 (35%), Positives = 210/378 (55%), Gaps = 17/378 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q AI ++ DM +K M R++ GDVG GKT VA+ A AV G Q ++ P Sbjct: 623 PYQETQDQLRAISEVKADMERKRPMDRLVCGDVGYGKTEVAIRAAFKAVMDGKQVAVLVP 682 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHYE ++ I VE+++ + + L+ + G ++IGTH L Sbjct: 683 TTILAQQHYETFRERFAEYPIRVEVLSRFRSRKEQNATLKGLKEGTVDVVIGTHRLLSKD 742 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + +L L+IVDE+ RFGV + KL Q T V+ +TATPIPRTL ++ LG D+S I Sbjct: 743 LTFRELGLLIVDEEQRFGVSHKEKLKQIKTNVDVMTLTATPIPRTLHMSMLGVRDLSVIE 802 Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R P++T ++ + + E IER ++ + +++ Q++ + E+ Sbjct: 803 TPPENRFPVQTYVMDYSPALVREAIER---EMARDGQVFFLYNQVQ-----GIEQMAEQI 854 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + L + IA+ HG+M++ + E V+ F G +L++TT+IE G+D+ + + +II N Sbjct: 855 SMLVPD--ARIAVAHGQMNESELEGVILDFLEGNFDVLVSTTIIETGVDIPNVNTLIIYN 912 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622 A+ GL+QL+QLRGRVGR I+ Y L++ + RL +K TE GF IA Sbjct: 913 ADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGSGFKIAM 972 Query: 623 EDLKQRKEGEILGIKQSG 640 DL R G +LG +Q G Sbjct: 973 RDLSIRGAGNLLGAEQHG 990 >gi|228898807|ref|ZP_04063090.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL 4222] gi|228860832|gb|EEN05209.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL 4222] Length = 1176 Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I +I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 614 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTIDIVIGT 733 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKAD 850 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988 >gi|111115454|ref|YP_710072.1| transcription-repair coupling factor [Borrelia afzelii PKo] gi|110890728|gb|ABH01896.1| transcription-repair coupling factor [Borrelia afzelii PKo] Length = 1124 Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 138/380 (36%), Positives = 210/380 (55%), Gaps = 21/380 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +AIK+I +DM M R+L GDVG GKT VA+ A AV Q V+++P Sbjct: 580 PYDETPDQITAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVVVLSP 639 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILA+QH+ KK +N I +E+++ + ++ L+ + G+ IIIGTH + Sbjct: 640 TTILAEQHFNTFKKRFKNFPIKIEVLSRFIKNNSEKRILKELKSGEIDIIIGTHKILSKK 699 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 L L+I+DE+ RFGV+++ KL + + L ++ATPIPR+L ++ + DIS + Sbjct: 700 FSCKNLGLIIIDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLK 759 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R I+ + + I IE LS + + + IEE + Sbjct: 760 IPPKNRVKIEAYLESFSELLIKHAIEN---ELSRDGQVFLVNHNIEE---------LHYL 807 Query: 508 NSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 +L E T + IAIIHG+++ I+ E++M F ++L+ATT+IE GID+ +A+ III Sbjct: 808 KTLIEKLTPYARIAIIHGKLTGIEIENIMHDFIKKAYQILLATTIIENGIDIPNANTIII 867 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLI 620 NA FGLAQL+QL+GRVGRG + + LY L++ S RL + D GF I Sbjct: 868 NNANKFGLAQLYQLKGRVGRGSKKAYAYFLYQDSEKLNERSIERLRAITEFSDLGSGFKI 927 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A +D++ R G +LG +Q G Sbjct: 928 AMKDMEIRGVGNLLGREQHG 947 >gi|325479334|gb|EGC82430.1| transcription-repair coupling factor [Anaerococcus prevotii ACS-065-V-Col13] Length = 1167 Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 133/380 (35%), Positives = 211/380 (55%), Gaps = 21/380 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T SQ +I +I DM M R+L GDVG GKT VA+ A A+ G Q + P Sbjct: 621 PFEETYSQIRSINEIKSDMESDKPMDRLLCGDVGYGKTEVAIRAAFKAIMDGYQVAFLVP 680 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILA QHYE I+K + V++++ + ++ + G+ ++IGTH L Sbjct: 681 TTILANQHYETIRKRFAKFPVNVQMLSRFNSKNKNDLIIKDLKAGKIDLVIGTHRLLSKD 740 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + Y KL L+I+DE+ RFGV+ + +L + ++ VL ++ATPIPRTL ++ G D+S + Sbjct: 741 VSYRKLGLLIIDEEQRFGVKHKEQLKEFKSSLDVLTLSATPIPRTLQMSLSGIRDLSTLD 800 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 E P R P+ T +I + I + IER +S G + Y++ ++ EK ++ + +V Sbjct: 801 EPPEERMPVNTYVIEYDNSIIKQAIER---EISRGGQVYFVYNRVNDIEKLYNHIKDLVP 857 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 S++AIIHG++S E M F +G +L++TT+IE G+D+ + + +II Sbjct: 858 E---------STVAIIHGKVSPKQIEKTMFEFIDGEIDVLLSTTIIETGMDISNVNTMII 908 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLI 620 +++ GL+QL+QL+GR+GRG S Y L+ S RL +++ D G+ I Sbjct: 909 YDSDMMGLSQLYQLKGRIGRGNRSSYAYFTYRTGKILTDISEKRLKSIRDFSDFGSGYKI 968 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A +DL+ R G +LG QSG Sbjct: 969 AMKDLELRGAGNLLGESQSG 988 >gi|228905850|ref|ZP_04069748.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL 200] gi|228853790|gb|EEM98549.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL 200] Length = 1176 Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I +I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 614 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTIDIVIGT 733 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 734 HRILSKDVAYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKAD 850 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988 >gi|218134568|ref|ZP_03463372.1| hypothetical protein BACPEC_02471 [Bacteroides pectinophilus ATCC 43243] gi|217989953|gb|EEC55964.1| hypothetical protein BACPEC_02471 [Bacteroides pectinophilus ATCC 43243] Length = 1177 Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 132/377 (35%), Positives = 208/377 (55%), Gaps = 15/377 (3%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +AI+D DM M R++ GDVG GKT VA+ A AV+ G Q + P Sbjct: 625 PYEETSDQLAAIEDTKHDMQSTKIMDRLICGDVGYGKTEVAIRAAFKAVQDGKQVAYLVP 684 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQH+ ++ ++ + V +++ ++ + + G I+IGTH L Sbjct: 685 TTILAQQHFNTFEQRMKDFPVKVAMLSRFRTPKEIKQTIADLRKGMVDIVIGTHRLLSKD 744 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 ++Y L L+I+DE+ RFGV + K+ + VL ++ATPIPRTL ++ +G D+S + Sbjct: 745 VEYKDLGLLIIDEEQRFGVSHKEKIKKLKENVDVLTLSATPIPRTLHMSLVGIRDMSVLE 804 Query: 450 EKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 E P R PI+T + N DE++ E + L+ G + Y++ ++ N R Sbjct: 805 EPPVDRMPIQTFVTEQN--DEMVREAINRELARGGQVYYVYNRVR-----NIDEAASRIQ 857 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 L +++A HG+M + E++M F NG +L++TT+IE G+D+ + + +IIE+A Sbjct: 858 QLVPD--ANVAYAHGQMDEKTLEAIMYDFINGDIDVLVSTTIIETGLDISNVNTMIIEDA 915 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKN-TE--DGFLIAEE 623 E+ GL+QL+QLRGRVGR + LLY L + + RL ++ TE GF IA + Sbjct: 916 ENLGLSQLYQLRGRVGRSNRTAYAFLLYRRGKMLKEVAEKRLHAIREFTELGSGFKIAMK 975 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R G +LG Q G Sbjct: 976 DLEIRGAGNVLGEAQHG 992 >gi|229009563|ref|ZP_04166790.1| Transcription-repair-coupling factor [Bacillus mycoides DSM 2048] gi|228751707|gb|EEM01506.1| Transcription-repair-coupling factor [Bacillus mycoides DSM 2048] Length = 1176 Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 136/380 (35%), Positives = 212/380 (55%), Gaps = 21/380 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q +I++I +DM + M R+L GDVG GKT VA+ A A+ Q I+ P Sbjct: 621 PYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVP 680 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGTH + Sbjct: 681 TTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKD 740 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG D+S I Sbjct: 741 VTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIE 800 Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 P R P++T ++ N + E IER L+ G + Y++ ++E E+K +V Sbjct: 801 TPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKADEISMLVP 857 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + + HG+M++ + ESVM SF G +L++TT+IE G+D+ + + +I+ Sbjct: 858 ---------DARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIV 908 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620 +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE GF I Sbjct: 909 FDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELGSGFKI 968 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL R G +LG +Q G Sbjct: 969 AMRDLSIRGAGNLLGAEQHG 988 >gi|216263646|ref|ZP_03435641.1| transcription-repair coupling factor [Borrelia afzelii ACA-1] gi|215980490|gb|EEC21311.1| transcription-repair coupling factor [Borrelia afzelii ACA-1] Length = 1124 Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 138/380 (36%), Positives = 210/380 (55%), Gaps = 21/380 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +AIK+I +DM M R+L GDVG GKT VA+ A AV Q V+++P Sbjct: 580 PYDETPDQITAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVVVLSP 639 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILA+QH+ KK +N I +E+++ + ++ L+ + G+ IIIGTH + Sbjct: 640 TTILAEQHFNTFKKRFKNFPIKIEVLSRFIKNNSEKRILKELKSGEIDIIIGTHKILSKK 699 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 L L+I+DE+ RFGV+++ KL + + L ++ATPIPR+L ++ + DIS + Sbjct: 700 FSCKNLGLIIIDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLK 759 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R I+ + + I IE LS + + + IEE + Sbjct: 760 IPPKNRVKIEAYLESFSELLIKHAIEN---ELSRDGQVFLVNHNIEE---------LHYL 807 Query: 508 NSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 +L E T + IAIIHG+++ I+ E++M F ++L+ATT+IE GID+ +A+ III Sbjct: 808 KTLIEKLTPYARIAIIHGKLTGIEIENIMHDFIKKAYQILLATTIIENGIDIPNANTIII 867 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLI 620 NA FGLAQL+QL+GRVGRG + + LY L++ S RL + D GF I Sbjct: 868 NNANKFGLAQLYQLKGRVGRGSKKAYAYFLYQDSEKLNERSIERLRAITEFSDLGSGFKI 927 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A +D++ R G +LG +Q G Sbjct: 928 AMKDMEIRGVGNLLGREQHG 947 >gi|75759615|ref|ZP_00739701.1| Transcription-repair coupling factor [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74492906|gb|EAO56036.1| Transcription-repair coupling factor [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 1186 Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I +I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 624 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 683 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 684 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTIDIVIGT 743 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 744 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 803 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 804 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKAD 860 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 861 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 911 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 912 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 971 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 972 LGSGFKIAMRDLSIRGAGNLLGAEQHG 998 >gi|327438085|dbj|BAK14450.1| transcription-repair coupling factor [Solibacillus silvestris StLB046] Length = 1170 Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 135/378 (35%), Positives = 210/378 (55%), Gaps = 17/378 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q I ++ +DM ++ M R++ GDVG GKT VA+ A A+ G Q + P Sbjct: 618 PYEETEDQLRTIAEVKKDMERERPMDRLVCGDVGYGKTEVAIRAAFKAILDGKQVAFLVP 677 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHYE I K ++ I V +++ + + + L+ + G I+IGTH + Sbjct: 678 TTILAQQHYETISKRFEDYAINVGLLSRFRSKKQQTETLKGLKEGTVDIVIGTHRILSKD 737 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + Y L L+IVDE+ RFGV + K+ Q T VL +TATPIPRTL ++ +G D+S I Sbjct: 738 VVYQDLGLLIVDEEQRFGVTHKEKIKQLRTNVDVLTLTATPIPRTLHMSMVGVRDLSVIE 797 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R P++T ++ N + E IER ++ G + +++ ++E + VE Sbjct: 798 TPPQNRFPVQTYVMEHNGALVREAIER---EMARGGQVFYLYNRVE-----DITRRVEEI 849 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 L + +A HG+M++ ESV+ SF G +L+ TT+IE G+D+ + + +I+ + Sbjct: 850 QMLVP--DARVAFAHGKMTEAKLESVILSFIEGEYDVLVTTTIIETGVDIPNVNTLIVHD 907 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622 A+ GL+QL+QLRGRVGR I+ +Y L++ + RL +K TE GF IA Sbjct: 908 ADRMGLSQLYQLRGRVGRSNRIAYAYFMYERDKVLTEVAEQRLQAVKEFTELGSGFKIAM 967 Query: 623 EDLKQRKEGEILGIKQSG 640 DL R G +LG +Q G Sbjct: 968 RDLSIRGAGNLLGAQQHG 985 >gi|218895189|ref|YP_002443600.1| transcription-repair coupling factor [Bacillus cereus G9842] gi|218545395|gb|ACK97789.1| transcription-repair coupling factor [Bacillus cereus G9842] Length = 1176 Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T+ Q +I +I +DM + M R+L GDVG GKT VA+ A A+ Sbjct: 614 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+ P ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGT Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTIDIVIGT 733 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H + + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793 Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498 D+S I P R P++T ++ N + E IER L+ G + Y++ ++E E+K Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKAD 850 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 +V + + HG+M++ + ESVM SF G +L++TT+IE G+D+ Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615 + + +I+ +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961 Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL R G +LG +Q G Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988 >gi|229053900|ref|ZP_04195335.1| Transcription-repair-coupling factor [Bacillus cereus AH603] gi|228721441|gb|EEL72961.1| Transcription-repair-coupling factor [Bacillus cereus AH603] Length = 1176 Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 136/380 (35%), Positives = 212/380 (55%), Gaps = 21/380 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q +I++I +DM + M R+L GDVG GKT VA+ A A+ Q I+ P Sbjct: 621 PYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVP 680 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGTH + Sbjct: 681 TTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKD 740 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG D+S I Sbjct: 741 VTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIE 800 Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 P R P++T ++ N + E IER L+ G + Y++ ++E E+K +V Sbjct: 801 TPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKADEISMLVP 857 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + + HG+M++ + ESVM SF G +L++TT+IE G+D+ + + +I+ Sbjct: 858 ---------DARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIV 908 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620 +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE GF I Sbjct: 909 FDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELGSGFKI 968 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL R G +LG +Q G Sbjct: 969 AMRDLSIRGAGNLLGAEQHG 988 >gi|270308451|ref|YP_003330509.1| transcription-repair coupling factor (superfamily II helicase) [Dehalococcoides sp. VS] gi|270154343|gb|ACZ62181.1| transcription-repair coupling factor (superfamily II helicase) [Dehalococcoides sp. VS] Length = 1154 Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 135/385 (35%), Positives = 209/385 (54%), Gaps = 17/385 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q++ + P+ T Q A+ DI +DM + M R++ GDVG GKT VA+ A AV G Sbjct: 604 QEMEASFPYVETPDQLKALCDIKEDMEKTRPMDRLILGDVGYGKTEVAIRAAFKAVMDGK 663 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY ++ + VE+++ Q+ +++ +E + G+ I IGT Sbjct: 664 QVAVLVPTTVLAQQHYTTFRERLATFPVKVEVLSRFRSQSEQKEVVENMEKGEVDICIGT 723 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q I++ L LVI+DE+ RFGV + + VL ++ATPIPRTL ++ +G Sbjct: 724 HRLLQADIKFKDLGLVIIDEEQRFGVAHKEFFKKLRAQVDVLTLSATPIPRTLHMSMVGV 783 Query: 443 IDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500 D+S I P R PIKTV+ + I E I R + + +++ ++ Sbjct: 784 RDMSVIETPPGERLPIKTVVAAFDERLIREAILR---EMERNGQVFFVSNRV-----MGI 835 Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560 + ER L + I I HG+M++ +VM F +L+ TT+IE G+DV +A Sbjct: 836 NLLAERIQKLVPE--ARIGIGHGQMAEDKLAAVMADFVRYELDVLVCTTIIESGVDVPNA 893 Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616 + +II A+ FGL QL+QLRGRVGR +++ LY LS ++ RL + + Sbjct: 894 NTLIINRADRFGLTQLYQLRGRVGRSSQLAYAYFLYDKEKHLSGDAEKRLKTIYEAAELG 953 Query: 617 -GFLIAEEDLKQRKEGEILGIKQSG 640 G+ IA +DL+ R G +LG+KQSG Sbjct: 954 AGYGIAMKDLEIRGAGTLLGVKQSG 978 >gi|126653275|ref|ZP_01725386.1| transcription-repair coupling factor [Bacillus sp. B14905] gi|126589949|gb|EAZ84078.1| transcription-repair coupling factor [Bacillus sp. B14905] Length = 1169 Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 135/377 (35%), Positives = 212/377 (56%), Gaps = 17/377 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T+ Q +I ++ +DM ++ M R++ GDVG GKT VA+ A A++ G Q + P Sbjct: 619 YEETEDQLRSIVEVKRDMERERPMDRLVCGDVGYGKTEVAIRAAFKAIQDGKQVAFLVPT 678 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 ILAQQHYE I++ Q+ I V +++ + + L+ + GQ I+IGTH + + Sbjct: 679 TILAQQHYETIRERFQDFAINVGLLSRFRSKKEQTATLKGLKEGQVDIVIGTHRILSKDL 738 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + L L+IVDE+ RFGV + K+ Q T VL +TATPIPRTL ++ +G D+S I Sbjct: 739 LFQDLGLLIVDEEQRFGVTHKEKIKQLKTNVDVLTLTATPIPRTLHMSMVGVRDLSVIET 798 Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 PA R P++T ++ + + E IER ++ G + +++ ++E+ VE Sbjct: 799 PPANRFPVQTYVMEHSGALVREAIER---EMARGGQVFYLYNRVEDMARK-----VEEIQ 850 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 L + I HG+MS+ + ESV+ SF G +L+ TT+IE G+D+ + + +I+ +A Sbjct: 851 VLVPE--ARIGHAHGKMSESELESVILSFLEGDYDVLVTTTIIETGVDIPNVNTLIVHDA 908 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623 + GLAQL+QLRGRVGR ++ +Y L+ + RL +K TE GF IA Sbjct: 909 DRMGLAQLYQLRGRVGRSNRVAYAYFMYQRDKVLTDVAEQRLQAIKEFTELGSGFKIAMR 968 Query: 624 DLKQRKEGEILGIKQSG 640 DL R G +LG +Q G Sbjct: 969 DLSIRGAGNLLGAQQHG 985 >gi|254514466|ref|ZP_05126527.1| transcription-repair coupling factor [gamma proteobacterium NOR5-3] gi|219676709|gb|EED33074.1| transcription-repair coupling factor [gamma proteobacterium NOR5-3] Length = 1152 Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 141/430 (32%), Positives = 223/430 (51%), Gaps = 21/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W R+ +A Q+ + R++ ++ G+ + ++ PF T Q Sbjct: 550 QWDKAQRKAREKANDVAAQLLEVYARREARQ--GVQFTDPEEDYERFAAGFPFEETPDQA 607 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI+ + +DM M R++ GDVG GKT VA+ A A Q ++ P +LAQQHY Sbjct: 608 AAIEAVERDMFAAGVMDRLVCGDVGFGKTEVAMRAAFIATANQRQVAVLVPTTLLAQQHY 667 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + N + +E+I+ + + R+ G I+IGTH L Q I++ L L+ Sbjct: 668 NSFRDRFANWPVKIEVISRFRAASDTKDVARRLEAGDVDILIGTHKLIQSDIRFADLGLL 727 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+HRFGV+Q+ + +L +TATPIPRTL + G D+S I PA R I Sbjct: 728 IIDEEHRFGVRQKDSIKALRAEVDILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSI 787 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 KT + + I E + R + G + +++ + R++ +R +L E Sbjct: 788 KTFVREQDHGLIKEAVLRETL---RGGQVFYV--------HNEVRTIEQRAAALRELLPD 836 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 SI + HG+M + E VM F + +LI +T+IE GID+ +A+ III+ A+ FGLAQ Sbjct: 837 LSIVVAHGQMHETQLERVMSDFYHQRHHILICSTIIETGIDIPNANTIIIDRADKFGLAQ 896 Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630 LHQLRGRVGR + LL P ++ ++ RL ++ + G+ +A DL+ R Sbjct: 897 LHQLRGRVGRSHHQAYAYLLCPPASAMTTDASKRLEAIEAAGELGAGYQLATHDLEIRGA 956 Query: 631 GEILGIKQSG 640 GE+LG +QSG Sbjct: 957 GELLGDEQSG 966 >gi|311740779|ref|ZP_07714606.1| transcription-repair coupling factor [Corynebacterium pseudogenitalium ATCC 33035] gi|311304299|gb|EFQ80375.1| transcription-repair coupling factor [Corynebacterium pseudogenitalium ATCC 33035] Length = 1213 Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 132/429 (30%), Positives = 221/429 (51%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W + ++ A +AG++ L ++Q G + + ++ N PF T+ Q Sbjct: 588 DWKNTKKKARAAVREIAGELVELYAKRQAAP--GHQFSPDNPWQAEMEDNFPFVETEDQM 645 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 AI + DM M R++ GDVG GKT VA+ A AV+ G Q ++ P +LAQQH+ Sbjct: 646 LAIDAVKHDMESTVPMDRVVVGDVGYGKTEVAIRAAFKAVQDGMQVAVLVPTTLLAQQHF 705 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + +E+++ + + + +A G I++GTH L Q + + L L+ Sbjct: 706 DTFSERMTGFPVKIEVLSRFTSKKEAKDIFKGLADGSVDIVVGTHRLLQTGVHWKNLGLI 765 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 +VDE+ RFGV+ + + + VL M+ATPIPRTL ++ G ++S I P R P+ Sbjct: 766 VVDEEQRFGVEHKEHIKALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPV 825 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516 T + +V ++ L + ++I ++ EKK R +V + Sbjct: 826 LTYVGAYED-KQVAAAIRRELLRDGQTFFIHNKVSDIEKKARELRDLVPE---------A 875 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 + + HG+M++ E + F + +L+ TT++E G+D+ +A+ +I+ENA H GL+QL Sbjct: 876 RVVVAHGQMNEEVLEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQL 935 Query: 577 HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 HQLRGRVGR E LY L++ SY RL+ + D G +A +DL+ R G Sbjct: 936 HQLRGRVGRSRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAG 995 Query: 632 EILGIKQSG 640 +LG +QSG Sbjct: 996 NVLGAQQSG 1004 >gi|114330160|ref|YP_746382.1| transcription-repair coupling factor [Nitrosomonas eutropha C91] gi|114307174|gb|ABI58417.1| transcription-repair coupling factor [Nitrosomonas eutropha C91] Length = 1154 Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 155/429 (36%), Positives = 226/429 (52%), Gaps = 27/429 (6%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q +AI ++QDM M R++ GDVG GKT VAL A A+ G Q I+ P Sbjct: 606 FEETPDQAAAIHAVIQDMVSGKPMDRLICGDVGFGKTEVALRAAFIAIADGRQVAILVPT 665 Query: 331 GILAQQHYE-FIKKY---TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 +LA+QHY+ F ++ + + ++ + +AL+ +A G IIIGTH L Sbjct: 666 TLLAEQHYQSFSDRFGLIADQWPVKIAELSRFRSTKEQSEALQSLAQGTTDIIIGTHKLI 725 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 QD +++ L LVI+DE+HRFGV+Q+ +L + VL +TATPIPRTL ++ G D S Sbjct: 726 QDKVKFKNLGLVIIDEEHRFGVRQKEQLKKLRAEVDVLTLTATPIPRTLAMSLEGLRDFS 785 Query: 447 KITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504 I P R I+T + P I E R L G + Y++ ++ S +++ Sbjct: 786 VIATAPQRRLAIRTFVHPYTEGIIREACLR---ELKRGGQIYFLYNEV-----STIQNMY 837 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L + I I HG+M + + E VM F +L+ TT+IE GIDV A+ II Sbjct: 838 TKLIKLLPE--AKINIAHGQMRESELEHVMRDFYQQRFNMLLCTTIIETGIDVPTANTII 895 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619 I A+ FGLAQLHQLRGRVGR + LL L+ + RL ++ E+ GF Sbjct: 896 IHRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEKAALTIQAIRRLEAIQAMEELGSGFY 955 Query: 620 IAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 +A DL+ R G +LG QSG M + + L++SLL+ A K K +PD+ G Sbjct: 956 LAMHDLEIRGAGAVLGDSQSGEMQEVGFS---LYNSLLDAAIKSLK--AGHEPDMQQPLG 1010 Query: 679 QSIRILLYL 687 S + L++ Sbjct: 1011 ISTEVRLHV 1019 >gi|160939694|ref|ZP_02087042.1| hypothetical protein CLOBOL_04586 [Clostridium bolteae ATCC BAA-613] gi|158437485|gb|EDP15249.1| hypothetical protein CLOBOL_04586 [Clostridium bolteae ATCC BAA-613] Length = 1200 Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 141/428 (32%), Positives = 224/428 (52%), Gaps = 17/428 (3%) Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EW + R R A E+ + L R++ + G + ++ P+ T Q Sbjct: 601 EWNKTKTRVRGAVQEIARDLVKLYAARQE---KAGFQYGTDTVWQREFEELFPYDETDDQ 657 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 AI + +DM + M R++ GDVG GKT VAL A AV+ Q V + P ILAQQH Sbjct: 658 MDAIDAVKKDMESRRIMDRLICGDVGYGKTEVALRAAFKAVQDSKQVVYLVPTTILAQQH 717 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y + ++ + V++++ A +++ LE + G I+IGTH + +Q+ L L Sbjct: 718 YNTFVQRMKDFPVRVDMLSRFCTPARQKRTLEDLRKGMVDIVIGTHRVLSKDMQFKDLGL 777 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +I+DE+ RFGV + K+ VL +TATPIPRTL ++ G D+S + E P R P Sbjct: 778 LIIDEEQRFGVAHKEKIKHLKENVDVLTLTATPIPRTLHMSLAGIRDMSVLEEPPVDRTP 837 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517 I+T ++ N + V E + L+ + Y++ ++ ++ V R +L + Sbjct: 838 IQTYVMEYNE-EMVREAINRELARNGQVYYVYNRV-----TDIDEVAGRVQALVPDAVVT 891 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 A HG+M + + E +M F NG +L++TT+IE G+D+ +A+ +II +A+ GL+QL+ Sbjct: 892 FA--HGQMREHELERIMADFINGEIDVLVSTTIIETGLDISNANTMIIHDADRMGLSQLY 949 Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGE 632 QLRGRVGR S L+Y L + + RL ++ TE G IA DL+ R G Sbjct: 950 QLRGRVGRSNRTSYAFLMYKRDKLLREEAEKRLQAIREFTELGSGIKIAMRDLEIRGAGN 1009 Query: 633 ILGIKQSG 640 +LG +Q G Sbjct: 1010 VLGAEQHG 1017 >gi|26247258|ref|NP_753298.1| transcription-repair coupling factor [Escherichia coli CFT073] gi|26107659|gb|AAN79858.1|AE016759_132 Transcription-repair coupling factor [Escherichia coli CFT073] Length = 951 Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 128/334 (38%), Positives = 185/334 (55%), Gaps = 14/334 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q + PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AV+ Sbjct: 612 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 671 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY+ + N + +E+I+ + + L +A G+ I+IGT Sbjct: 672 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 731 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q +++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G Sbjct: 732 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 791 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 D+S I PA R +KT + D ++ R + +L E G + Y++ +E N Sbjct: 792 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 842 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 + ER L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ Sbjct: 843 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 900 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 A+ IIIE A+HFGLAQLHQLRGRVGR C+ Sbjct: 901 ANTIIIERADHFGLAQLHQLRGRVGRSXPPGICM 934 >gi|312796442|ref|YP_004029364.1| transcription-repair coupling factor [Burkholderia rhizoxinica HKI 454] gi|312168217|emb|CBW75220.1| Transcription-repair coupling factor [Burkholderia rhizoxinica HKI 454] Length = 1165 Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 140/378 (37%), Positives = 202/378 (53%), Gaps = 19/378 (5%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q +++P Sbjct: 613 FDETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQVALLSPT 672 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA+QH + + + + ++ A++ I G I+IGTH L + Sbjct: 673 TLLAEQHVQTFTDRFADWPVRIAELSRFKSTKEVNAAIQAINDGNVDIVIGTHKLLSADV 732 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G D S I Sbjct: 733 RFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIAT 792 Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERF 507 P R IKT + D VI E + L G + Y++ ++E + + + ++V Sbjct: 793 APQKRLAIKTFVR--REEDSVIREAMLRELKRGGQVYFLHNEVESIDSRRAALEALVPE- 849 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + IA+ HG+M + D E VM F +L+ TT+IE GIDV A+ I+I Sbjct: 850 --------ARIAVAHGQMHERDLERVMRDFVAQRANVLLCTTIIETGIDVPSANTILIHR 901 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622 A+ FGLAQLHQLRGRVGR + LL + P LS+ + RL ++ E+ GF +A Sbjct: 902 ADKFGLAQLHQLRGRVGRSHHQAYAYLLVNDPQSLSRQAQRRLEAIQQMEELGAGFYLAM 961 Query: 623 EDLKQRKEGEILGIKQSG 640 DL+ R GE+LG KQSG Sbjct: 962 HDLEIRGTGEVLGEKQSG 979 >gi|255325397|ref|ZP_05366501.1| transcription-repair coupling factor [Corynebacterium tuberculostearicum SK141] gi|255297483|gb|EET76796.1| transcription-repair coupling factor [Corynebacterium tuberculostearicum SK141] Length = 1212 Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 132/429 (30%), Positives = 221/429 (51%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W + ++ A +AG++ L ++Q G + + ++ N PF T+ Q Sbjct: 588 DWKNTKKKARAAVREIAGELVELYAKRQAAP--GHQFSPDNPWQAEMEDNFPFVETEDQM 645 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 AI + DM M R++ GDVG GKT VA+ A AV+ G Q ++ P +LAQQH+ Sbjct: 646 LAIDAVKHDMESTVPMDRVVVGDVGYGKTEVAIRAAFKAVQDGMQVAVLVPTTLLAQQHF 705 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + +E+++ + + + +A G I++GTH L Q + + L L+ Sbjct: 706 DTFSERMTGFPVKIEVLSRFTSKKEAKDIFKGLADGSVDIVVGTHRLLQTGVHWKNLGLI 765 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 +VDE+ RFGV+ + + + VL M+ATPIPRTL ++ G ++S I P R P+ Sbjct: 766 VVDEEQRFGVEHKEHIKALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPV 825 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516 T + +V ++ L + ++I ++ EKK R +V + Sbjct: 826 LTYVGAYED-KQVAAAIRRELLRDGQTFFIHNKVSDIEKKARELRDLVPE---------A 875 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 + + HG+M++ E + F + +L+ TT++E G+D+ +A+ +I+ENA H GL+QL Sbjct: 876 RVVVAHGQMNEEVLEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQL 935 Query: 577 HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 HQLRGRVGR E LY L++ SY RL+ + D G +A +DL+ R G Sbjct: 936 HQLRGRVGRSRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAG 995 Query: 632 EILGIKQSG 640 +LG +QSG Sbjct: 996 NVLGAQQSG 1004 >gi|229131061|ref|ZP_04259974.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST196] gi|229165042|ref|ZP_04292838.1| Transcription-repair-coupling factor [Bacillus cereus AH621] gi|228618427|gb|EEK75456.1| Transcription-repair-coupling factor [Bacillus cereus AH621] gi|228652398|gb|EEL08322.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST196] Length = 1176 Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 136/380 (35%), Positives = 212/380 (55%), Gaps = 21/380 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q +I++I +DM + M R+L GDVG GKT VA+ A A+ Q I+ P Sbjct: 621 PYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVP 680 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGTH + Sbjct: 681 TTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKD 740 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG D+S I Sbjct: 741 VTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIE 800 Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 P R P++T ++ N + E IER L+ G + Y++ ++E E+K +V Sbjct: 801 TPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKADEISMLVP 857 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + + HG+M++ + ESVM SF G +L++TT+IE G+D+ + + +I+ Sbjct: 858 ---------DARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIV 908 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620 +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE GF I Sbjct: 909 FDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELGSGFKI 968 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL R G +LG +Q G Sbjct: 969 AMRDLSIRGAGNLLGAEQHG 988 >gi|157964740|ref|YP_001499564.1| transcription-repair coupling factor [Rickettsia massiliae MTU5] gi|157844516|gb|ABV85017.1| Transcription-repair coupling factor [Rickettsia massiliae MTU5] Length = 1134 Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 147/441 (33%), Positives = 239/441 (54%), Gaps = 39/441 (8%) Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQ--KILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 +IAL L++ K+++ +VE + + K N PFS T+ Q +AI DI +D+ M Sbjct: 553 EIALHLIQIAAKRKLNSSASVEFDLEEYDKFCANFPFSETEDQLTAINDIKEDLRNGMLM 612 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHY----EFIKKYTQ 346 R++ GDVG GKT VA+ A+ ++ Q ++ P IL QH+ E K + Sbjct: 613 DRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQHFSRFIERFKGFGL 672 Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 N + + +I+ + R + + G+ +IIIGTH+L +I+++ L L+I+DE+ F Sbjct: 673 NIKQLSRVISSKEAKIIRSE----LESGKINIIIGTHSLLHKNIKFFNLKLLIIDEEQHF 728 Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466 GV Q+ L ++ HVL M+ATPIPRTL ++ G ++S I P R ++T ++P Sbjct: 729 GVGQKELLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTSVMP-- 786 Query: 467 RIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAII 521 D VI R +L E G +++++ P+I+ E E + +V S I Sbjct: 787 -FDPVIIR-DALLREHFRGGRSFYVVPRIKDIEDIEKQLKQIVPEL---------SYKIA 835 Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581 HG+M+ + VM F G +L++TT+IE GID+ +A+ +II A+ GL+QL+QLRG Sbjct: 836 HGKMTPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANTMIIHKADMLGLSQLYQLRG 895 Query: 582 RVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGI 636 R+GRG+ L H ++ +S RL +++N+ GF IA D+ R G ++G Sbjct: 896 RIGRGKMRGYAYLTVASHKKMTSHSLRRLEIIQNSCALGSGFTIASHDMDLRGFGNLIGE 955 Query: 637 KQSGMPKFLIAQPELHDSLLE 657 +QSG K + EL+ +LE Sbjct: 956 EQSGQIKEV--GTELYQEMLE 974 >gi|212637897|ref|YP_002314417.1| transcription-repair coupling factor (helicase, mfd) [Anoxybacillus flavithermus WK1] gi|212559377|gb|ACJ32432.1| Transcription-repair coupling factor (helicase, mfd) [Anoxybacillus flavithermus WK1] Length = 1189 Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 134/399 (33%), Positives = 220/399 (55%), Gaps = 21/399 (5%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G + + ++ ++ P+ T+ Q +I++I +DM + M R+L GDVG GKT VAL Sbjct: 622 GYAFSPDNEMQREFEAAFPYQETEDQLRSIREIKRDMESERPMDRLLCGDVGYGKTEVAL 681 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A A+ G Q + P ILAQQHYE +++ Q I V +++ + + + ++ + Sbjct: 682 RAAFKAIMDGKQVAFLVPTTILAQQHYETVRERFQGYPIHVSLLSRFRTKKQQTETIQGL 741 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 G ++IGTH L + + L L+I+DE+ RFGV + K+ Q T VL +TATPI Sbjct: 742 KDGTIDMVIGTHRLLSKDVSFKDLGLLIIDEEQRFGVAHKEKIKQLKTNIDVLTLTATPI 801 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI--DEVIERLKVVLSEGKKAYWIC 489 PRTL ++ +G D+S I P R P++T ++ + I E IER ++ G + +++ Sbjct: 802 PRTLHMSLIGVRDLSVIETPPENRFPVQTYVMEYSPIIVREAIER---EMARGGQVFFLY 858 Query: 490 PQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 ++E ++K ++V + + HGRMS+ + E+VM +F G +L++ Sbjct: 859 NRVEDIDRKAEEISALVP---------DARVTYAHGRMSEHELEAVMLAFLEGQYDVLVS 909 Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSY 605 TT+IE G+D+ + + +I+ +A+ GL+QL+QLRGRVGR I+ Y L++ + Sbjct: 910 TTIIETGVDIPNVNTLIVYDADKMGLSQLYQLRGRVGRSNRIAYAYFTYRKDKVLNEIAE 969 Query: 606 TRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGM 641 RL +K TE GF IA DL R G +LG +Q G Sbjct: 970 KRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAQQHGF 1008 >gi|169825685|ref|YP_001695843.1| transcription-repair coupling factor [Lysinibacillus sphaericus C3-41] gi|168990173|gb|ACA37713.1| Transcription-repair coupling factor [Lysinibacillus sphaericus C3-41] Length = 1169 Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 135/377 (35%), Positives = 212/377 (56%), Gaps = 17/377 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T+ Q +I ++ +DM ++ M R++ GDVG GKT VA+ A A++ G Q + P Sbjct: 619 YEETEDQLRSIVEVKRDMERERPMDRLVCGDVGYGKTEVAIRAAFKAIQDGKQVAFLVPT 678 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 ILAQQHYE I++ Q+ I V +++ + + L+ + GQ I+IGTH + + Sbjct: 679 TILAQQHYETIRERFQDFAINVGLLSRFRSKKEQTATLKGLKEGQVDIVIGTHRILSKDL 738 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + L L+IVDE+ RFGV + K+ Q T VL +TATPIPRTL ++ +G D+S I Sbjct: 739 IFQDLGLLIVDEEQRFGVTHKEKIKQLKTNVDVLTLTATPIPRTLHMSMVGVRDLSVIET 798 Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 PA R P++T ++ + + E IER ++ G + +++ ++E+ VE Sbjct: 799 PPANRFPVQTYVMEHSGALVREAIER---EMARGGQVFYLYNRVEDMARK-----VEEIQ 850 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 L + I HG+MS+ + ESV+ SF G +L+ TT+IE G+D+ + + +I+ +A Sbjct: 851 VLVPE--ARIGHAHGKMSETELESVILSFLEGDYDVLVTTTIIETGVDIPNVNTLIVHDA 908 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623 + GLAQL+QLRGRVGR ++ +Y L+ + RL +K TE GF IA Sbjct: 909 DRMGLAQLYQLRGRVGRSNRVAYAYFMYQRDKVLTDVAEQRLQAIKEFTELGSGFKIAMR 968 Query: 624 DLKQRKEGEILGIKQSG 640 DL R G +LG +Q G Sbjct: 969 DLSIRGAGNLLGAQQHG 985 >gi|163938061|ref|YP_001642945.1| transcription-repair coupling factor [Bacillus weihenstephanensis KBAB4] gi|163860258|gb|ABY41317.1| transcription-repair coupling factor [Bacillus weihenstephanensis KBAB4] Length = 1176 Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 136/380 (35%), Positives = 212/380 (55%), Gaps = 21/380 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q +I++I +DM + M R+L GDVG GKT VA+ A A+ Q I+ P Sbjct: 621 PYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVP 680 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHYE I++ Q+ I + +++ + + + ++ + G I+IGTH + Sbjct: 681 TTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKD 740 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + Y L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ LG D+S I Sbjct: 741 VTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIE 800 Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 P R P++T ++ N + E IER L+ G + Y++ ++E E+K +V Sbjct: 801 TPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKADEISMLVP 857 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + + HG+M++ + ESVM SF G +L++TT+IE G+D+ + + +I+ Sbjct: 858 ---------DARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIV 908 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620 +A+ GL+QL+QLRGRVGR ++ Y LS+ + RL +K TE GF I Sbjct: 909 FDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELGSGFKI 968 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL R G +LG +Q G Sbjct: 969 AMRDLSIRGAGNLLGAEQHG 988 >gi|116750898|ref|YP_847585.1| transcription-repair coupling factor [Syntrophobacter fumaroxidans MPOB] gi|116699962|gb|ABK19150.1| transcription-repair coupling factor [Syntrophobacter fumaroxidans MPOB] Length = 1189 Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 142/429 (33%), Positives = 225/429 (52%), Gaps = 21/429 (4%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W + ++ L E +A ++ L ++Q + G + QK + T Q Sbjct: 592 WETAKKKALESAERVAEELLSLYAKRQIGE--GFRFSPPDSYFQKFEATFSYEETPDQMR 649 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI D+L DM+ + M R++ GDVG GKT VAL A AV G Q ++ P +LA+QHY+ Sbjct: 650 AIDDVLDDMASRRPMDRLICGDVGYGKTEVALRAAFKAVMDGKQVAMLVPTTVLAEQHYQ 709 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 + + ++VE ++ A + L+ + +G +++GTH L Q + + L L++ Sbjct: 710 SFTERFEGFPVVVETLSRFKTPAQQTLVLKGLKNGTVDVVVGTHRLLQSDVAFRDLGLLV 769 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 +DE+HRFGV+ + ++ + + VL +TATPIPRTL + G D+S I P R I+ Sbjct: 770 IDEEHRFGVKHKERMKEMRVSVDVLTLTATPIPRTLHMALAGIRDLSTIETPPQDRHAIE 829 Query: 460 TVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TS 516 T I + DE R V L + +++ ++ +S+ + N++ + Sbjct: 830 TFIC---KYDEFTIREAVYRELRRSGQVFFV--------HNHVQSIYQTANAIGRLIPEA 878 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 IA+ HG+M + D E VM F +L+ TT+IE G+D+ A+ III A+ FGLAQ+ Sbjct: 879 KIAVAHGQMKERDLEKVMLDFIRRKIDVLVCTTIIESGLDIPAANTIIINRADKFGLAQI 938 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 +QLRGRVGR E + LL +S+++ RL L + + GF IA DL+ R G Sbjct: 939 YQLRGRVGRSSEQAFAYLLIPGEHLISRDAQKRLRALLDFSELGAGFKIALNDLQIRGGG 998 Query: 632 EILGIKQSG 640 ILG QSG Sbjct: 999 TILGSSQSG 1007 >gi|332519222|ref|ZP_08395689.1| transcription-repair coupling factor [Lacinutrix algicola 5H-3-7-4] gi|332045070|gb|EGI81263.1| transcription-repair coupling factor [Lacinutrix algicola 5H-3-7-4] Length = 1120 Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 139/431 (32%), Positives = 229/431 (53%), Gaps = 16/431 (3%) Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 K E G N + + ++ + + T Q A DI DM + M R++ GDVG GKT Sbjct: 538 KLEKGYQYNTDSYLQHELEASFIYEDTPDQIKATADIKADMESERPMDRLICGDVGFGKT 597 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 VA+ A AV+ G Q ++ P ILA QH++ + + + V+ + +R+ Sbjct: 598 EVAIRAAFKAVDNGKQVAVLVPTTILAFQHHKTFSERLKEFPVTVDYLNRFRTAKEKRET 657 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 +E++ G IIIGTH L +++ L L+IVDE+ +FGV + KL VL +T Sbjct: 658 IEKLEKGHVDIIIGTHQLVNKKVKFKDLGLLIVDEEQKFGVAVKEKLKTLKDNVDVLTLT 717 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL + + D+S IT P R PI++ +I N + + + + + G + ++ Sbjct: 718 ATPIPRTLQFSLMAARDLSVITTPPPNRFPIESNVIRFNE-ETIRDAVSYEIQRGGQIFF 776 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 I +IE KE +++R + I I HG++ E +M +F NG +L++ Sbjct: 777 IHNRIENIKE--VAGMLQRLVP-----DAKIGIGHGQLDGKKLEELMLAFINGDFDVLVS 829 Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSY 605 TT+IE G+DV +A+ I I NA +FGL+ LHQ+RGRVGR + + C + + ++ ++ Sbjct: 830 TTIIESGLDVPNANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPGYDAMTPDAR 889 Query: 606 TRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIA 659 R+ L+ GF IA +DL+ R G++LG +QSG F Q L++++ E+ Sbjct: 890 KRIQALEQFTALGSGFNIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKILNEAIEELK 949 Query: 660 RKDAKHILTQD 670 + K + ++D Sbjct: 950 ETEFKDLYSED 960 >gi|85858740|ref|YP_460942.1| transcription-repair coupling factor [Syntrophus aciditrophicus SB] gi|85721831|gb|ABC76774.1| transcription-repair coupling factor [Syntrophus aciditrophicus SB] Length = 1202 Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 132/376 (35%), Positives = 203/376 (53%), Gaps = 13/376 (3%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q AI+DI DM+ M R++ GD G GKT VA+ + G Q ++ P Sbjct: 661 PYDETPDQARAIEDIHADMNSAKPMDRLICGDAGFGKTEVAMRSAFRTAMDGRQTAVLVP 720 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILA+QH + ++ I +E + +A + LE + GQ I+IGTH L Q Sbjct: 721 TTILAEQHCQTFSSRMKDYPIRIEALNRFKSKAEQSSVLEGLRKGQVDIVIGTHRLLQKD 780 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L LVIVDE+ RFGV + KL + T VL +TATPIPRTL L+ +G D+S I Sbjct: 781 VTFKNLGLVIVDEEQRFGVAHKEKLKKLRTLVDVLTLTATPIPRTLHLSLVGIRDLSIIN 840 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P R+ IKT ++ N + + E ++ L+ + +++ ++ + +VE+ Sbjct: 841 TPPEDRQTIKTYVLEFNE-ETIREAIRRELARNGQVFFLHDRV--RSIYTMARLVEKLVP 897 Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 + I ++HG+M + E VM F C +L+ TT+I G+D+ A+ I++ A+ Sbjct: 898 -----EADIGVVHGQMKPREIEDVMGRFLRKECNVLVCTTIIGSGLDIPTANTILVNRAD 952 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEED 624 FGLAQL+Q+RGRVGR E + LL LS+++ RL V+ + + GF IA D Sbjct: 953 RFGLAQLYQIRGRVGRSSEEAYAYLLVPKGVLLSRDAQKRLQVIMDFSEPGSGFRIASSD 1012 Query: 625 LKQRKEGEILGIKQSG 640 ++ R G +LG QSG Sbjct: 1013 MEIRGGGNLLGTSQSG 1028 >gi|319953407|ref|YP_004164674.1| transcription-repair coupling factor [Cellulophaga algicola DSM 14237] gi|319422067|gb|ADV49176.1| transcription-repair coupling factor [Cellulophaga algicola DSM 14237] Length = 1125 Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 135/390 (34%), Positives = 215/390 (55%), Gaps = 15/390 (3%) Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317 +G + ++ + + T Q A +DI +DM + M R++ GDVG GKT VA+ A A Sbjct: 543 DGYLQHELEASFIYEDTPDQSKATEDIKRDMESERPMDRLICGDVGFGKTEVAIRAAFKA 602 Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377 V G Q ++ P ILA QH K+ ++ + V+ + ++ LER+ G+ Sbjct: 603 VANGKQVAVLVPTTILAFQHNRTFKERLKDMPVTVDYLNRFRTTKEKKDTLERLEAGKVD 662 Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437 IIIGTH L ++++ L L+IVDE+ +FGV + KL VL +TATPIPRTL Sbjct: 663 IIIGTHQLVNKNVKFKDLGLLIVDEEQKFGVAVKDKLKSIKENVDVLTLTATPIPRTLQF 722 Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497 + + D+S I P R PI++ +I + + + + + + G + ++I ++E KE Sbjct: 723 SLMAARDLSVINTAPPNRYPIQSDVIRFSE-ETIRDAVSYEIQRGGQVFFIHNRVENIKE 781 Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557 +++R + I I HG+M E +M +F NG +L++TT+IE G+DV Sbjct: 782 --VAGLIQRLVP-----DAKIGIGHGQMEGKKLEILMLAFINGEFDVLVSTTIIESGLDV 834 Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN- 613 +A+ I I NA +FGL+ LHQ+RGRVGR + + C + PP ++ ++ R+ L+ Sbjct: 835 SNANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFI-TPPYEVMTSDARKRIEALEQF 893 Query: 614 TE--DGFLIAEEDLKQRKEGEILGIKQSGM 641 TE GF IA +DL+ R G+ILG +QSG Sbjct: 894 TELGSGFNIAMKDLEIRGAGDILGGEQSGF 923 >gi|331084270|ref|ZP_08333375.1| transcription-repair coupling factor [Lachnospiraceae bacterium 6_1_63FAA] gi|330401805|gb|EGG81382.1| transcription-repair coupling factor [Lachnospiraceae bacterium 6_1_63FAA] Length = 1182 Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 131/372 (35%), Positives = 206/372 (55%), Gaps = 13/372 (3%) Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T Q AI+ QDM K M R++ GDVG GKT +A+ A + G Q V + P IL Sbjct: 636 TDDQLMAIQAAKQDMESKKIMDRLICGDVGYGKTEIAIRIAFKAAQEGKQVVYLVPTTIL 695 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 AQQHY + ++ + V+++ A ++K + G I+IGTH + D +++ Sbjct: 696 AQQHYNTFVQRMKDFPVRVDLLCRFRTPAQQKKTIADTQKGLVDILIGTHRVLSDDVKFK 755 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L L+I+DE+ RFGV + K+ + VL +TATPIPRTL ++ +G D+S + E P Sbjct: 756 DLGLLIIDEEQRFGVTHKEKIKKLKENIDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPM 815 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 R PI+T ++ N + V E + L+ G + Y++ ++ + E V R L Sbjct: 816 DRMPIQTYVMEYNE-EMVREAISRELARGGQVYYVYNRVNDIDE-----VTNRVAKLVPE 869 Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 +++A HG+M + E +M SF NG +L++TT+IE G+D+ +A+ +II +A+ GL Sbjct: 870 --ANVAFAHGQMQEHQLEKIMYSFINGEIDVLVSTTIIETGLDISNANTMIIHDADQMGL 927 Query: 574 AQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628 +QL+QLRGRVGR + L+Y + L + + RL ++ D GF IA DL+ R Sbjct: 928 SQLYQLRGRVGRSNRTAYAFLMYKKNKMLKEVAEKRLHAIREFTDLGSGFKIAMRDLEIR 987 Query: 629 KEGEILGIKQSG 640 G +LG +Q G Sbjct: 988 GAGNLLGAEQHG 999 >gi|255014104|ref|ZP_05286230.1| putative transcription-repair coupling factor [Bacteroides sp. 2_1_7] Length = 1120 Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 137/407 (33%), Positives = 217/407 (53%), Gaps = 13/407 (3%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+L+ + K+E G + + ++ + + T Q AI ++ DM M R++ Sbjct: 523 LILLYSKRKQETGFAYTPDSFMQHELEASFIYEDTPDQMKAIAEVKADMESTRPMDRLIC 582 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LA QHY+ + ++ ++ I+ Sbjct: 583 GDVGFGKTEVAIRAAFKAVSDNKQVAVLVPTTVLAFQHYQTFCERLKDFPCKIDYISRAR 642 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A + L+ + G+ +I+IGTH + +++ L L+I+DE+ +FGV + KL Q Sbjct: 643 TAAQIKATLKELKEGEVNILIGTHRIVGKDVRFKDLGLLIIDEEQKFGVSVKEKLRQLKV 702 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 L MTATPIPRTL + +G D+S IT P R P++T + N D + E + + Sbjct: 703 NVDTLTMTATPIPRTLQFSLMGARDLSSITTPPPNRYPVQTEVERFNP-DIIREAINFEM 761 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 S + ++I +I+ E ++V R E + +A+ HG+M E ++ F N Sbjct: 762 SRNGQVFFINNRIQNIYE--METLVRR-----EVPDARVAVGHGQMEPEKLEKIILDFVN 814 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP- 598 +LIAT+++E GIDV +A+ III NA+ FGL+ LHQLRGRVGR + C LL P Sbjct: 815 YEYDVLIATSIVESGIDVPNANTIIINNAQQFGLSDLHQLRGRVGRSNRKAFCYLLSPPL 874 Query: 599 -PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 L++ + RL ++N + G IA +DL R G +LG +QSG Sbjct: 875 TSLTQEARRRLQAIENFSELGSGIHIAMQDLDIRGAGNMLGAEQSGF 921 >gi|260589951|ref|ZP_05855864.1| transcription-repair coupling factor [Blautia hansenii DSM 20583] gi|260539758|gb|EEX20327.1| transcription-repair coupling factor [Blautia hansenii DSM 20583] Length = 1182 Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 131/372 (35%), Positives = 206/372 (55%), Gaps = 13/372 (3%) Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T Q AI+ QDM K M R++ GDVG GKT +A+ A + G Q V + P IL Sbjct: 636 TDDQLMAIQAAKQDMESKKIMDRLICGDVGYGKTEIAIRIAFKAAQEGKQVVYLVPTTIL 695 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 AQQHY + ++ + V+++ A ++K + G I+IGTH + D +++ Sbjct: 696 AQQHYNTFVQRMKDFPVRVDLLCRFRTPAQQKKTIADTQKGLVDILIGTHRVLSDDVKFK 755 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L L+I+DE+ RFGV + K+ + VL +TATPIPRTL ++ +G D+S + E P Sbjct: 756 DLGLLIIDEEQRFGVTHKEKIKKLKENIDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPM 815 Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513 R PI+T ++ N + V E + L+ G + Y++ ++ + E V R L Sbjct: 816 DRMPIQTYVMEYNE-EMVREAISRELARGGQVYYVYNRVNDIDE-----VTNRVAKLVPE 869 Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573 +++A HG+M + E +M SF NG +L++TT+IE G+D+ +A+ +II +A+ GL Sbjct: 870 --ANVAFAHGQMQEHQLEKIMYSFINGEIDVLVSTTIIETGLDISNANTMIIHDADQMGL 927 Query: 574 AQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628 +QL+QLRGRVGR + L+Y + L + + RL ++ D GF IA DL+ R Sbjct: 928 SQLYQLRGRVGRSNRTAYAFLMYKKNKMLKEVAEKRLHAIREFTDLGSGFKIAMRDLEIR 987 Query: 629 KEGEILGIKQSG 640 G +LG +Q G Sbjct: 988 GAGNLLGAEQHG 999 >gi|78212830|ref|YP_381609.1| transcription-repair coupling factor [Synechococcus sp. CC9605] gi|78197289|gb|ABB35054.1| transcription-repair coupling factor [Synechococcus sp. CC9605] Length = 1192 Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 139/450 (30%), Positives = 241/450 (53%), Gaps = 24/450 (5%) Query: 237 QIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 ++AL L++ + ++ G +G ++ + P+ PT Q A D+ +DM ++ M Sbjct: 584 KVALDLVKLYAERQQAAGFAFPTDGPWQVEMEESFPYDPTPDQLKATADVKRDMERQEPM 643 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R++ GDVG GKT VA+ A+ A+ AG Q ++AP +LAQQH+ + + I V + Sbjct: 644 DRLVCGDVGFGKTEVAIRAIFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYPIKVAL 703 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 + + R+ L+ + G ++GTH L + +L L++VDE+ RFGV Q+ K+ Sbjct: 704 LNRFRTASERKSILDGLKQGTIDAVVGTHQLLSKGASFQELGLLVVDEEQRFGVNQKEKI 763 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 VL ++ATPIPRTL ++ G ++S IT P R+PIKT + ++ + + Sbjct: 764 KVLRKDVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPIKTHLASLD-PEAMRSA 822 Query: 475 LKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532 ++ L G + +++ P++E E+ + R ++ L + HG+M++ + E+ Sbjct: 823 IRQELDRGGQVFYVVPRVEGIEEVAAGLREMLPGLKLL---------VAHGQMAEGELEN 873 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 M +F G +++ TT++E G+D+ + I+IE+A FGLAQL+QLRGRVGR I + Sbjct: 874 AMVAFNAGEADVMLCTTIVESGLDIPRVNTILIEDAHRFGLAQLYQLRGRVGR-SGIQAH 932 Query: 593 ILLYHP---PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK--- 643 L++P LS + RL ++ G+ +A D++ R G +LG++QSG + Sbjct: 933 AWLFYPGNASLSDTARQRLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVQQSGQMETIG 992 Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDL 673 F + L +SL EI +D + DL Sbjct: 993 FDLYMEMLQESLAEIQGQDIPSVEDTQVDL 1022 >gi|307265094|ref|ZP_07546654.1| transcription-repair coupling factor [Thermoanaerobacter wiegelii Rt8.B1] gi|306919892|gb|EFN50106.1| transcription-repair coupling factor [Thermoanaerobacter wiegelii Rt8.B1] Length = 1169 Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 151/462 (32%), Positives = 240/462 (51%), Gaps = 36/462 (7%) Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFK 248 DL+QK P+ NP K EW R+ E LA + L ++Q Sbjct: 551 DLVQKYVGPT--------DNPPKLNKLGGSEWLRAKRKAKKAVEDLAKDLIQLYAKRQMV 602 Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 K G + + ++ P+ T+ Q IK+I +DM + M R+L GDVG GKT Sbjct: 603 K--GHAFSPDTPWQKEFEEQFPYEETEDQLRCIKEIKEDMEKDRPMDRLLCGDVGYGKTE 660 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHY-EFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 VAL A AV G Q + P ILA QHY FI+++ + + +E+++ + + Sbjct: 661 VALRAAFKAVADGKQVAFLCPTTILAYQHYTNFIERFKE-FPVKIEMLSRFRTPKEQAQI 719 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 ++ +A G II+GTH L Q+ +++ L L+I+DE+ RFGV + K+ + VL ++ Sbjct: 720 IKGLAEGTIDIIVGTHRLLQNDVKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLS 779 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKA 485 ATPIPRTL ++ +G D+S + P R P++T ++ N I + I R + G + Sbjct: 780 ATPIPRTLHMSLIGIRDMSVLENPPEDRFPVETYVMEFNEELIKDAILR---EIGRGGQV 836 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y++ ++ + +E+ SL + +A+ HG+M + E VM F NG Sbjct: 837 YFVYNRV---------NGIEKMASLVKDLVPGCRVAVAHGQMEESQLEKVMIDFLNGEYD 887 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LS 601 +L++TT+IE G+D+ + + II+ +A+ GL+QL+QLRGRVGR ++ Y LS Sbjct: 888 VLVSTTIIETGLDIPNVNTIIVYDADKLGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLS 947 Query: 602 KNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640 + + RL +K TE GF IA DL+ R G +LG +Q G Sbjct: 948 EVAEKRLEAIKEFTEFGSGFKIAMRDLEIRGAGNLLGAEQHG 989 >gi|123966148|ref|YP_001011229.1| transcriptional-repair coupling factor [Prochlorococcus marinus str. MIT 9515] gi|123200514|gb|ABM72122.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str. MIT 9515] Length = 1175 Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 128/389 (32%), Positives = 218/389 (56%), Gaps = 15/389 (3%) Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317 +G +++ + P+ PT Q +A+K+I DM M R++ GDVG GKT VA+ A+ A Sbjct: 600 DGPWQKELEESFPYQPTPDQLTAVKEIKIDMESDKPMDRLVCGDVGFGKTEVAVRAIFKA 659 Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377 + +G Q +++AP ILAQQH+ I V ++ + ++ + + + Sbjct: 660 ITSGKQVILLAPTTILAQQHWRTFNNRFSPYPIKVSLLNRFKTSSEKKDIYAGLKNNKID 719 Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437 +++ TH + I+ L L+++DE+ RFGV+Q+ K+ T VL ++ATPIPRTL + Sbjct: 720 LVVATHQILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKNIKTNIDVLTLSATPIPRTLYM 779 Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497 + G +S + P R+ IKT + I+ +D + + L G + +++ P+I + + Sbjct: 780 SLSGLRQMSLLNTPPPSRRSIKTYLSEID-MDVIRTAISQELDRGGQIFYVLPRISDIDQ 838 Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557 + + FN L + HG+M++ID E+ M +F NG L+I TT+IE G+D+ Sbjct: 839 A-VNKLTNMFNDL------KFIVAHGQMNEIDLENAMIAFNNGEVDLMICTTIIESGLDI 891 Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL---SKNSYTRLSVLKNT 614 + IIIE++ FGL+QL+QLRGRVGR I + L++P L ++ S RL +K+ Sbjct: 892 PKVNTIIIEDSHKFGLSQLYQLRGRVGRS-GIQAHAWLFYPNLNNINEASKQRLKAIKDF 950 Query: 615 ED---GFLIAEEDLKQRKEGEILGIKQSG 640 + G+ +A +D++ R G +LG +QSG Sbjct: 951 SELGSGYQLAMKDMEIRGVGSLLGEEQSG 979 >gi|302345727|ref|YP_003814080.1| transcription-repair coupling factor [Prevotella melaninogenica ATCC 25845] gi|302150109|gb|ADK96371.1| transcription-repair coupling factor [Prevotella melaninogenica ATCC 25845] Length = 1178 Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 140/435 (32%), Positives = 234/435 (53%), Gaps = 20/435 (4%) Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 ++E G + + + ++ + + T Q A +++ QDM M R++ GDVG GKT Sbjct: 589 RREKGFAFSPDSFMQHELEASFLYEDTPDQLKATQELKQDMESARPMDRLVCGDVGFGKT 648 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 VA+ A A Q ++ P +LA QHY+ KK ++ + V+ ++ ++ Sbjct: 649 EVAIRAAFKAAVDNKQVAVLVPTTVLAFQHYQTFKKRLKDMPVRVDYLSRARSAKQTKQV 708 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 LE +A G+ I++GTH L S++++ L L+I+DE+ +FGV + KL Q T L M+ Sbjct: 709 LEDLAEGKIDILVGTHKLIGKSVKWHDLGLLIIDEEQKFGVSTKEKLRQLKTNVDTLTMS 768 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAY 486 ATPIPRTL + +G D+S + P R PI+T I + EVI + + +S + Y Sbjct: 769 ATPIPRTLQFSLMGARDMSIMRTPPPNRYPIQTEIASFSH--EVIADAINFEMSRNGQVY 826 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLL 545 ++ +I SN + N + ++ + IAI HG+M + E ++ F N +L Sbjct: 827 FVNDRI-----SNLPEIA---NLIKKYVPNCRIAIGHGQMKPEELEEIVMGFMNYDYDVL 878 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKN 603 ++TT++E GID+ +A+ III +A FGL+ LHQ+RGRVGR + + C LL P L+ Sbjct: 879 LSTTIVENGIDISNANTIIINDAHRFGLSDLHQMRGRVGRSNKKAFCYLLAPPLAALNPE 938 Query: 604 SYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFL---IAQPELHDSLLE 657 + RL L+ D GF +A +DL R G +LG +QSG + L Q L+ +++E Sbjct: 939 ARRRLEALETFSDLGSGFNLAMQDLDIRGAGNLLGSEQSGFMEDLGYETYQKILNQAVME 998 Query: 658 IARKDAKHILTQDPD 672 + + + + ++ D Sbjct: 999 LKNDEFQDLYEEEMD 1013 >gi|326390842|ref|ZP_08212394.1| transcription-repair coupling factor [Thermoanaerobacter ethanolicus JW 200] gi|325993101|gb|EGD51541.1| transcription-repair coupling factor [Thermoanaerobacter ethanolicus JW 200] Length = 1169 Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 151/462 (32%), Positives = 240/462 (51%), Gaps = 36/462 (7%) Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFK 248 DL+QK P+ NP K EW R+ E LA + L ++Q Sbjct: 551 DLVQKYVGPT--------DNPPKLNKLGGSEWLRAKRKAKKAVEDLAKDLIQLYAKRQMV 602 Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 K G + + ++ P+ T+ Q IK+I +DM + M R+L GDVG GKT Sbjct: 603 K--GHAFSPDTPWQKEFEEQFPYEETEDQLRCIKEIKEDMEKDRPMDRLLCGDVGYGKTE 660 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHY-EFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 VAL A AV G Q + P ILA QHY FI+++ + + +E+++ + + Sbjct: 661 VALRAAFKAVADGKQVAFLCPTTILAYQHYTNFIERFKE-FPVKIEMLSRFRTPKEQAQI 719 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 ++ +A G II+GTH L Q+ +++ L L+I+DE+ RFGV + K+ + VL ++ Sbjct: 720 IKGLAEGTIDIIVGTHRLLQNDVKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLS 779 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKA 485 ATPIPRTL ++ +G D+S + P R P++T ++ N I + I R + G + Sbjct: 780 ATPIPRTLHMSLIGIRDMSVLENPPEDRFPVETYVMEFNEELIKDAILR---EIGRGGQV 836 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543 Y++ ++ + +E+ SL + +A+ HG+M + E VM F NG Sbjct: 837 YFVYNRV---------NGIEKMASLVKDLVPGCRVAVAHGQMEESQLEKVMIDFLNGEYD 887 Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LS 601 +L++TT+IE G+D+ + + II+ +A+ GL+QL+QLRGRVGR ++ Y LS Sbjct: 888 VLVSTTIIETGLDIPNVNTIIVYDADKLGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLS 947 Query: 602 KNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640 + + RL +K TE GF IA DL+ R G +LG +Q G Sbjct: 948 EVAEKRLEAIKEFTEFGSGFKIAMRDLEIRGAGNLLGAEQHG 989 >gi|167766179|ref|ZP_02438232.1| hypothetical protein CLOSS21_00673 [Clostridium sp. SS2/1] gi|167712259|gb|EDS22838.1| hypothetical protein CLOSS21_00673 [Clostridium sp. SS2/1] Length = 1173 Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 127/376 (33%), Positives = 205/376 (54%), Gaps = 13/376 (3%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q +AI D +DM K M R++ GDVG GKT VA+ A AV+ G Q + P Sbjct: 625 PYDETQDQLNAIDDTKRDMESKKIMDRLICGDVGYGKTEVAIRAAFKAVDNGKQVAYLVP 684 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHY + + I V +++ +++ +E + +G ++IGTH L Sbjct: 685 TTILAQQHYNTFAQRFHDYPITVRMMSRFCTAKEQKETIEGLKNGTVDVVIGTHRLLSKD 744 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +QY L L+++DE+ RFGV + K+ VL ++ATPIPRTL ++ +G D+S + Sbjct: 745 MQYKNLGLLVIDEEQRFGVTHKEKIKTMKKDVDVLSLSATPIPRTLHMSLIGIRDMSVLE 804 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 E P R+ I+T ++ N + V E + ++ G + Y++ ++ +N V Sbjct: 805 EPPHDRRAIQTYVMEYNE-ELVKEAVYREMTRGGQVYYVYNRV-----NNIAEVTAELQR 858 Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 L + +A HG+M + + E +M F N +L++TT+IE G+D+ + + +II +A Sbjct: 859 LLP--DAKVAFAHGQMKERELEEIMMGFMNHEIDVLVSTTIIETGLDIPNVNTMIIHDAN 916 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEED 624 GL+QL+QLRGRVGR + L+Y + L + + RL ++ D G+ IA D Sbjct: 917 QLGLSQLYQLRGRVGRSNRNAFAFLMYKKNTLLKETAEKRLQAIREFTDLGSGYKIAMRD 976 Query: 625 LKQRKEGEILGIKQSG 640 L+ R G +LG QSG Sbjct: 977 LEIRGAGNLLGQAQSG 992 >gi|126726506|ref|ZP_01742347.1| transcription-repair coupling factor [Rhodobacterales bacterium HTCC2150] gi|126704369|gb|EBA03461.1| transcription-repair coupling factor [Rhodobacterales bacterium HTCC2150] Length = 1157 Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 143/399 (35%), Positives = 225/399 (56%), Gaps = 23/399 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T+ Q AI+ + +D+ + M R++ GDVG GKT VA+ A A +G Q ++AP Sbjct: 597 PFQETEDQLGAIEAVAEDLGRGLPMDRLVCGDVGFGKTEVAMRAAFVAAMSGVQVAVIAP 656 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHY+ + + I V ++ + A E I G A II+GTHA+ S Sbjct: 657 TTLLARQHYKSFAERFRGFPIEVRQLSRFVSTKDAHDAREAINRGTADIIVGTHAVLAKS 716 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +++ L L+I+DE+ +FGVQ + +L Q + HVL +TATPIPRTL L+ G ++S I Sbjct: 717 VRFNNLGLLIIDEEQKFGVQHKERLKQMRSDIHVLTLTATPIPRTLQLSLSGVRELSIIG 776 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R I+T + D V R + +L E G +++++ P+I + E +E Sbjct: 777 TPPVDRLAIRTY---VTEFDSVTLR-EALLREHYRGGQSFYVVPRISDLPE------IEE 826 Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 F L +H S HG+M+ + + M++F +G +L+ATT++E G+D+ A+ +II Sbjct: 827 F--LRDHVPEVSFITAHGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMII 884 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 A+ FGLAQL+Q+RGRVGR + + L P L+ ++ RL VL + + GF + Sbjct: 885 HRADMFGLAQLYQIRGRVGRSKTRAYAYLTTRPRKKLTPSAEKRLRVLGSLDSLGAGFTL 944 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 A +DL R G +LG +QSG + + EL+ S+LE A Sbjct: 945 ASQDLDIRGAGNLLGEEQSGQMRDV--GFELYQSMLEEA 981 >gi|84687524|ref|ZP_01015400.1| transcription-repair coupling factor [Maritimibacter alkaliphilus HTCC2654] gi|84664433|gb|EAQ10921.1| transcription-repair coupling factor [Rhodobacterales bacterium HTCC2654] Length = 1153 Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 131/380 (34%), Positives = 216/380 (56%), Gaps = 21/380 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P++ T Q SAI D+++DMS + M R++ GDVG GKT VA+ A A +G Q ++AP Sbjct: 596 PYTETDDQLSAIADVIEDMSAGSPMDRLICGDVGFGKTEVAMRAAFVAALSGKQVAVIAP 655 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHY+ + + I V ++ + Q + E + G I++GTHAL Sbjct: 656 TTLLARQHYKSFAERFRGFPIQVSQLSRFVSQGEANRTREGMKDGTVDIVVGTHALLAKG 715 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 ++ L L+++DE+ RFGV + +L + + HVL ++ATPIPRTL ++ G D+S I Sbjct: 716 TRFKDLGLLVIDEEQRFGVSHKERLKELRSDVHVLTLSATPIPRTLQMSLTGVRDLSIIG 775 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R I+T ++ D V R + +L E G +++ + P++++ +E +E Sbjct: 776 TPPVDRLSIRTY---VSEFDTVTIR-EALLREHYRGGQSFVVVPRVKDLRE------IEE 825 Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 F L S +G+M+ + + M++F +G +L+ATT++E G+D+ A+ +++ Sbjct: 826 F--LETQVPEVSFVTANGQMAAGELDHRMNAFYDGKFDVLVATTIVESGLDIPTANTMVV 883 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 A+ FGLAQL+Q+RGRVGR + + C L P PL+ + RL VL + + GF + Sbjct: 884 WRADMFGLAQLYQIRGRVGRSKTRAYCYLTTKPRVPLTPGAEKRLKVLGSLDSLGAGFAL 943 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A +DL R G +LG +QSG Sbjct: 944 ASQDLDIRGAGNLLGEEQSG 963 >gi|254497711|ref|ZP_05110485.1| transcription repair coupling factor [Legionella drancourtii LLAP12] gi|254353058|gb|EET11819.1| transcription repair coupling factor [Legionella drancourtii LLAP12] Length = 1149 Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 140/387 (36%), Positives = 207/387 (53%), Gaps = 23/387 (5%) Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323 K PF+ T Q +I I+ DM M R++ GDVG GKT VA+ A AV+ Q Sbjct: 595 KFASAFPFTETVDQLQSINQIITDMQSSRPMDRLICGDVGFGKTEVAMRAAFVAVQNNKQ 654 Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383 I+ P +LA QH+E + + + +E+++ L + G+ I+IGTH Sbjct: 655 VCILVPTTLLAGQHFESFRDRFADFAVNIELLSRFRSAKETEGVLASLKSGKTDIVIGTH 714 Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443 LFQ +I + L L+I+DE+HRFGV+Q+ + T +L MTATPIPRTL + G Sbjct: 715 KLFQSNIAFKNLGLLIIDEEHRFGVKQKEHIKALRTHVDILSMTATPIPRTLNMAMAGIR 774 Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKES 498 DIS +T PA R IKT + D V+ + +L E G + +++ +E E+ Sbjct: 775 DISLMTTPPAKRLAIKTFW--QEKKDSVVR--EAILREILRGGQVFFLHNNVETIERICQ 830 Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 + +++V + + HG+M + + E VM F + +L+ TT+IE GID+ Sbjct: 831 DLQTLVPE---------AKVRSAHGQMRERELERVMSEFYHHRFNVLVCTTIIETGIDIP 881 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED 616 A+ III+ A+ FGLAQLHQLRGRVGR + LL L+ ++ RL + + ED Sbjct: 882 TANTIIIDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPDEKLLTSDAVKRLEAIVSLED 941 Query: 617 ---GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 942 LGAGFTLATHDLEIRGAGELLGEDQSG 968 >gi|189218310|ref|YP_001938952.1| transcription-repair coupling factor mfd (superfamily II helicase) [Methylacidiphilum infernorum V4] gi|189185168|gb|ACD82353.1| Transcription-repair coupling factor mfd (superfamily II helicase) [Methylacidiphilum infernorum V4] Length = 1060 Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 135/377 (35%), Positives = 207/377 (54%), Gaps = 17/377 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T Q AI++ +DM K M R++ GDVG GKT VA+ A+ AV G QAV++ P Sbjct: 530 YEETPDQLKAIEETKKDMESKRPMDRLICGDVGFGKTEVAIRAIFKAVMGGKQAVLLTPT 589 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA+QH+ +++ + I ++ + + ++ L + G +++GTH L + Sbjct: 590 TVLAKQHFNTLRERFADYPIHTALLCRFVKNSEEKEILAGLKEGTVDVVVGTHRLLSADV 649 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L L+++DE+ RFGV Q+ K +K VLL++ATPIPRTL L G D+S I Sbjct: 650 EFKDLGLIVIDEEQRFGVLQKEKWKEKFRFIDVLLLSATPIPRTLYLAMAGARDMSLIET 709 Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R PI+T++ P + I + IER L+ G + Y++ +I V R Sbjct: 710 PPPNRFPIETIVGPYDERVIRQAIER---ELNRGGQVYFLHNRIR-----TIEKVASRLK 761 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 SL + I I HGRM + E VM+ F G +L+AT++IE G+D+ +A+ III+ A Sbjct: 762 SLLP--SIKIDIGHGRMKKHELEEVMERFVEGKIDVLLATSIIENGLDIPNANTIIIDRA 819 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPL--SKNSYTRLSVLKNTED---GFLIAEE 623 + FGLA L+QLRGRVGR + + LL L ++ R+ ++ GF IA Sbjct: 820 DLFGLADLYQLRGRVGRSNQKAYAYLLLPRDLFIQSDAKKRIKAMQEHSQLGTGFQIALR 879 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R G +LG QSG Sbjct: 880 DLEIRGAGNLLGTSQSG 896 >gi|304437107|ref|ZP_07397070.1| transcription-repair coupling factor [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370058|gb|EFM23720.1| transcription-repair coupling factor [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 1097 Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 142/384 (36%), Positives = 208/384 (54%), Gaps = 28/384 (7%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q AI +I DM + M R+L GDVG GKT VA+ A A G Q ++ P Sbjct: 549 PYQETDDQLRAIAEIKHDMESEKPMDRLLCGDVGFGKTEVAIRAAYKAAMDGYQVAVLVP 608 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF-QD 388 +LAQQHY+ + V+++ + L +A GQ I+IGTHA+ + Sbjct: 609 TTVLAQQHYQTFAARFADFAPKVDVVCRFRTLREQAATLRDVARGQVDILIGTHAILNRK 668 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 +++ KL L+IVDE+ RFGV Q+ K+ + AT VL ++ATPIPRTL ++ G D+S I Sbjct: 669 RVRFQKLGLLIVDEEQRFGVTQKEKIKEFATGVDVLTLSATPIPRTLHMSLAGARDMSVI 728 Query: 449 TEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 PA R P+++ ++ + + IER LS G + Y+I + VE Sbjct: 729 ETPPAERLPVQSYVVESSDAMMRGAIER---ELSRGGQIYFIYNR------------VES 773 Query: 507 FNSLHEHF-----TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 + + EH + IA HG+MS+ E VM F G +L+AT++IE GIDV +A+ Sbjct: 774 IDRMREHLLQIVPQARIASAHGQMSEDILEQVMMDFYEGHYDILLATSIIENGIDVANAN 833 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---D 616 III +A+ FGL+QL+Q+RGRVGR +++ Y LS+ + RL +K Sbjct: 834 TIIIYDADRFGLSQLYQMRGRVGRSAKMAFAYFTYRRDKVLSETAEKRLQAMKEFARLGS 893 Query: 617 GFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL+ R G +LG +Q G Sbjct: 894 GFKIAMRDLEIRGAGSLLGAQQHG 917 >gi|229824545|ref|ZP_04450614.1| hypothetical protein GCWU000282_01889 [Catonella morbi ATCC 51271] gi|229785916|gb|EEP22030.1| hypothetical protein GCWU000282_01889 [Catonella morbi ATCC 51271] Length = 1183 Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 138/431 (32%), Positives = 233/431 (54%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ A E +A ++ L +++ +E+G + + + T+ Q Sbjct: 571 EWAKTKRKVAAKIEDIADELIALYAKRE--REVGYAFGPDTPEQSEFESAFAYVETEDQL 628 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM + M R+L GDVG GKT VA+ A+ AV G Q + P ILAQQHY Sbjct: 629 RSAIEIKADMEKSKPMDRLLVGDVGYGKTEVAMRAIFKAVMDGKQVAFLVPTTILAQQHY 688 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + + +++ + + + + ++ + G +I++GTH L +Q+ L L+ Sbjct: 689 NSLVQRFADYPFEIRLMSRFVSKKQQDQTIDDLLTGAVNIVVGTHRLVSKDVQFQDLGLL 748 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + +L Q + VL +TATPIPRTL ++ +G D+S I P R P+ Sbjct: 749 IVDEEQRFGVKHKERLKQLKSQVDVLTLTATPIPRTLHMSMIGVRDLSLIETPPNNRFPV 808 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 +T ++ N I IER L+ + +++ ++ E++ +++V Sbjct: 809 QTYVMERNDGAIKSGIER---ELAREGQVFYLYNRVATIERRAMEIQALVPE-------- 857 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + +A HG+MS+++ E+V+ F G +L+ TT+IE G+D+ + + + +E+A+H GL+ Sbjct: 858 -ARVAYAHGQMSEVELETVLVDFIQGAYDVLVTTTIIETGVDIPNVNTLFVEDADHMGLS 916 Query: 575 QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 L+QLRGRVGR ++ L+Y P LS+ S RL ++ TE GF IA DL R Sbjct: 917 TLYQLRGRVGRTNRVAYAYLMYEPFKSLSEVSEKRLQAVREFTELGSGFKIAMRDLSIRG 976 Query: 630 EGEILGIKQSG 640 G +LG +QSG Sbjct: 977 AGNLLGKQQSG 987 >gi|114764341|ref|ZP_01443569.1| transcription-repair coupling factor [Pelagibaca bermudensis HTCC2601] gi|114543289|gb|EAU46306.1| transcription-repair coupling factor [Roseovarius sp. HTCC2601] Length = 1158 Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 140/399 (35%), Positives = 224/399 (56%), Gaps = 23/399 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P++ T Q AI+D+L+DM+ N M R++ GDVG GKT VA+ A A +G Q ++AP Sbjct: 601 PYTETDDQIGAIEDVLEDMTSGNPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVAVIAP 660 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHY+ + + I V ++ + K + I G I +GTHAL + Sbjct: 661 TTLLARQHYKSFAERFRGFPINVAPLSRFVSSGQAAKTRDGITKGTVDIAVGTHALLAKN 720 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ L L+I+DE+ FGV + +L Q + HVL +TATPIPRTL L+ G D+S I Sbjct: 721 IRFQNLGLLIIDEEQHFGVGHKERLKQLRSDIHVLTLTATPIPRTLQLSLSGVRDLSIIG 780 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R I+T ++ D V R + +L E G +++++ P+I + E +E Sbjct: 781 TPPVDRLSIRTY---VSEFDAVTIR-EALLREHYRGGQSFYVVPRISDLAE------IEE 830 Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 F L E S + HG+M+ + + M++F +G +L+ATT++E G+D+ A+ +++ Sbjct: 831 F--LREQVPEVSYVVAHGQMAAGELDERMNAFYDGKFDVLLATTIVESGLDIPTANTMVV 888 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 ++ FGL+QL+Q+RGRVGR + + L P L+ + RL VL + + GF + Sbjct: 889 HRSDMFGLSQLYQIRGRVGRSKTRAYAYLTTQPRAKLTDTAQKRLRVLGSLDTLGAGFTL 948 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 A +DL R G +LG +QSG + + EL+ S+LE A Sbjct: 949 ASQDLDIRGAGNLLGEEQSGQMRDV--GYELYQSMLEEA 985 >gi|330836643|ref|YP_004411284.1| transcription-repair coupling factor [Spirochaeta coccoides DSM 17374] gi|329748546|gb|AEC01902.1| transcription-repair coupling factor [Spirochaeta coccoides DSM 17374] Length = 1092 Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 137/415 (33%), Positives = 236/415 (56%), Gaps = 17/415 (4%) Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 E LA ++ L R++ + P + + ++ + + P+ T+ Q + I+DI +DM Sbjct: 514 EQLATRLQQLYARRKNARGFPFPPDTDWQL--QFEASFPYDETEDQLTCIEDIKKDMESP 571 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351 M R++ GDVG GKT +A A AV +G Q V +AP ILA+QHY + + Sbjct: 572 IVMDRLVCGDVGYGKTEIAFRAAFKAVMSGKQVVFLAPTTILAEQHYNTFIGRLGDFPVR 631 Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411 V +++ +P+ + K L+ + GQ I+ GTH + Q +++ L L++VDE+ RFGV+ + Sbjct: 632 VGLLSRMVPRKEQSKVLKNLQAGQLDILFGTHRVIQKDVKFSDLGLLVVDEEQRFGVKDK 691 Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471 ++ + T+ L ++ATPIPRTL ++ L D+S +T P R+PI+T+I + D Sbjct: 692 ERIKEMRTSVDSLSLSATPIPRTLYMSLLRIRDMSLLTTPPIARRPIRTIIQQYDP-DIA 750 Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531 + ++ L G + +++ +IE VV + F +I HG+M+ D E Sbjct: 751 EKAIRNELGRGGQVFYLHNRIE-----TLGMVVNKLRERMPEF--AIESAHGQMNGDDLE 803 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 M F + ++L++TT+IE GID+ + + III+ A+ +G++QL+QLRGRVGR + + Sbjct: 804 DTMRRFIHEGIQVLVSTTIIENGIDIPNVNTIIIDRADMYGVSQLYQLRGRVGRSDR-EA 862 Query: 592 CILLYHPP---LSKNSYTRL-SVLKNTE--DGFLIAEEDLKQRKEGEILGIKQSG 640 C L++P LS+ + RL ++ ++TE GF +A +D++ R G +LG +QSG Sbjct: 863 CAYLFYPQEEMLSEIAIRRLQTISQHTELGGGFKVAMKDMEIRGTGNLLGREQSG 917 >gi|332297986|ref|YP_004439908.1| transcription-repair coupling factor [Treponema brennaborense DSM 12168] gi|332181089|gb|AEE16777.1| transcription-repair coupling factor [Treponema brennaborense DSM 12168] Length = 1185 Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 140/414 (33%), Positives = 229/414 (55%), Gaps = 15/414 (3%) Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 E +A ++ L R++ + P + E + A + P+ T Q + ++ DM + Sbjct: 606 EDIAQKLIDLYSRRKAARGFPFPKDTEWQTAFEAA--FPYDETDDQLTVTAEVKADMEKP 663 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351 M R++ GDVG GKT VA+ A AV G Q +AP ILA+QHYE + +N + Sbjct: 664 VPMDRLICGDVGYGKTEVAMRAAFKAVMGGKQVAFLAPTTILAEQHYETCTERFENFPVR 723 Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411 + ++ + +A ++ LE++ G I++GTH + Q + + +L L+I+DE+ RFGV+ + Sbjct: 724 IAHMSRFVSKAEQKNILEKLKTGGVDILVGTHRIIQKDVIFKELGLMIIDEEQRFGVKDK 783 Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471 +L + T L M+ATPIPRTL ++ L D+S +T P R+PI+TVI N D V Sbjct: 784 ERLKELKTNIDSLAMSATPIPRTLHMSLLKIRDMSLLTTPPQNRQPIETVIDSYND-DRV 842 Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531 ++ G + +++ ++E +E+ + L A HG+MS + + Sbjct: 843 ATAIRREAERGGQVFYLHNRVETLEETRI-----KLEQLVPEMLVDTA--HGQMSAGELD 895 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 + FK G +L+ATT+IE GID+ + + III+ A+ +G++QL+QLRGRVGR + + Sbjct: 896 DIFRRFKMGGFHVLVATTIIENGIDIPNVNTIIIDRADMYGVSQLYQLRGRVGRSDRKAY 955 Query: 592 CILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640 LLY + LS+ + RL V+ + TE GF IA +D++ R G +LG QSG Sbjct: 956 AYLLYPENKALSEIAMKRLQVISDFTELGSGFKIAMKDMEIRGAGNLLGKDQSG 1009 >gi|15604448|ref|NP_220966.1| transcription-repair coupling factor [Rickettsia prowazekii str. Madrid E] gi|6226643|sp|O05955|MFD_RICPR RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|3861142|emb|CAA15042.1| TRANSCRIPTION-REPAIR COUPLING FACTOR (mfd) [Rickettsia prowazekii] gi|292572220|gb|ADE30135.1| Transcription-repair coupling factor [Rickettsia prowazekii Rp22] Length = 1120 Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 147/441 (33%), Positives = 240/441 (54%), Gaps = 39/441 (8%) Query: 237 QIALLLMRKQFKKEIGI--PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 +I+L L++ K+++ I PI ++ + K N PFS T+ Q +AI DI +D++ M Sbjct: 539 EISLHLIQIAAKRKLNISTPIELDLEAYDKFCANFPFSETEDQLTAINDIREDLTNGMLM 598 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHY----EFIKKYTQ 346 R++ GDVG GKT VA+ A+ ++ Q ++ P IL QH+ E K + Sbjct: 599 DRLICGDVGFGKTEVAMRAVFMVAKSLNEYLPQVAVVVPTTILCSQHFSRFIERFKGFGL 658 Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 N + + +I+ R + +A G+ +IIIGTHAL + +++ L L+I+DE+ F Sbjct: 659 NIKQLSSVISSKEANIIRLE----LASGKINIIIGTHALLHKNTKFFNLKLLIIDEEQHF 714 Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466 GV Q+ L ++ HVL M+ATPIPRTL ++ G ++S I P R ++T ++P Sbjct: 715 GVSQKEFLKSLKSSTHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTSVMP-- 772 Query: 467 RIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAII 521 D VI R +L E G +++++ P+I+ E E + +V S I Sbjct: 773 -FDPVIIR-DALLREHFRGGRSFYVAPRIKDMEDIEKQLKQIVPEL---------SYKIA 821 Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581 HG+M+ + VM F G +LI+TT+IE GID+ +A+ +II A+ GL+QL+QLRG Sbjct: 822 HGKMTPSKIDEVMSEFYVGKFDILISTTIIESGIDIAEANTMIIHKADTLGLSQLYQLRG 881 Query: 582 RVGRGE--EISSCILLYHPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGI 636 R+GRG+ + + + ++ +S RL +++N+ GF IA D R G ++G Sbjct: 882 RIGRGKIRGYAYLTVASNKKITSHSLRRLEIIQNSCSLGSGFTIASHDADLRGFGNLIGE 941 Query: 637 KQSGMPKFLIAQPELHDSLLE 657 +QSG K + EL+ +LE Sbjct: 942 EQSGQIKEV--GTELYQEMLE 960 >gi|123968563|ref|YP_001009421.1| transcriptional-repair coupling factor [Prochlorococcus marinus str. AS9601] gi|123198673|gb|ABM70314.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str. AS9601] Length = 1170 Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 126/390 (32%), Positives = 220/390 (56%), Gaps = 17/390 (4%) Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317 +G ++ + P+ PT Q +A+++I DM + M R++ GDVG GKT VA+ A+ A Sbjct: 599 DGPWQDELEESFPYQPTPDQITAVEEIKSDMESEKPMDRLVCGDVGFGKTEVAVRAIFKA 658 Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377 + +G Q +++AP ILAQQH+ I I V ++ R++ + + + Sbjct: 659 ITSGKQVILLAPTTILAQQHWRTISNRFSPYPIKVSLLNRFKTVNERKEIYAGLKNNKID 718 Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437 +++ TH + I+ L L+++DE+ RFGV+Q+ K+ + T+ VL ++ATPIPRTL + Sbjct: 719 LVVATHQILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKKIKTSIDVLTLSATPIPRTLYM 778 Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497 + G +S + P R+ IKT + I+ +D + + L G + +++ P+I + Sbjct: 779 SLSGLRQMSLLNTPPPSRRSIKTYLAEID-MDVIRTAINQELDRGGQIFYVLPRISD--- 834 Query: 498 SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556 + + N L F S + HG+M++ + E+ M +F NG L+I TT+IE G+D Sbjct: 835 -----INQALNKLKNIFPSLKFIVAHGQMNETELENAMIAFNNGEVDLMICTTIIESGLD 889 Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK---NSYTRLSVLKN 613 + + IIIE++ FGL+QL+QLRGRVGR + + L++P ++K + RL +K+ Sbjct: 890 IPKVNTIIIEDSHKFGLSQLYQLRGRVGRS-SVQAHAWLFYPDINKINDAAKQRLKAIKD 948 Query: 614 TED---GFLIAEEDLKQRKEGEILGIKQSG 640 + G+ +A +D++ R G +LG +QSG Sbjct: 949 FSELGSGYQLAMKDMEIRGVGSLLGEEQSG 978 >gi|302390888|ref|YP_003826708.1| transcription-repair coupling factor [Acetohalobium arabaticum DSM 5501] gi|302202965|gb|ADL11643.1| transcription-repair coupling factor [Acetohalobium arabaticum DSM 5501] Length = 1175 Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 137/384 (35%), Positives = 210/384 (54%), Gaps = 15/384 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q+ + P+ T Q I+++ +DM M R+L GDVG GKT VA+ A AV G Sbjct: 620 QEFESDFPYEETPDQLKTIEEVKEDMESPQPMDRLLCGDVGYGKTEVAIRAAFKAVLDGK 679 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q ++ P ILAQQH FI ++ ++ + V +++ ++K +E + G IIIG Sbjct: 680 QVAMLVPTTILAQQHLNTFIDRF-EDYPVKVGMLSRFKTAKEQKKIIEDLKQGIIDIIIG 738 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH + I++ L +IVDE+ RFGV+ + +L Q + VL +TATPIPRTL ++ +G Sbjct: 739 THRILSTDIEFNDLGFLIVDEEQRFGVKHKERLKQIKKSIDVLTLTATPIPRTLHMSLVG 798 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D+S I P R PI+T + + D + E ++ + G + Y++ +++ N Sbjct: 799 VRDMSLIETPPQNRYPIRTYVREYSD-DLIREAIRKEIDRGGQVYFVHNRVK-----NID 852 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 V + L + + HG+MS+ E +M F +G +L+ TT+IE G+D+ + + Sbjct: 853 KVAAKIKKLLPK--AEVVTAHGQMSEAKLEKIMLGFLDGEHDVLVCTTIIETGLDIPNVN 910 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTED 616 I+I NA+ GLAQL+QLRGRVGR ++ LLY LS+ + RL +K N Sbjct: 911 TILINNADQLGLAQLYQLRGRVGRTNRVAYAYLLYQQDQVLSEVAEKRLQAIKEFTNLGS 970 Query: 617 GFLIAEEDLKQRKEGEILGIKQSG 640 GF IA DL+ R G ILG KQ G Sbjct: 971 GFKIAMRDLEIRGAGNILGPKQHG 994 >gi|224534488|ref|ZP_03675064.1| transcription-repair coupling factor [Borrelia spielmanii A14S] gi|224514165|gb|EEF84483.1| transcription-repair coupling factor [Borrelia spielmanii A14S] Length = 1129 Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 136/378 (35%), Positives = 211/378 (55%), Gaps = 17/378 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +AIK+I +DM M R+L GDVG GKT VA+ A AV Q V+++P Sbjct: 580 PYDETPDQITAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVVVLSP 639 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILA+QH+ KK +N I +E+++ + ++ L+ + G+ IIIGTH + Sbjct: 640 TTILAEQHFNTFKKRFKNFPIKIEVLSRFIKTNSEKRILKELKSGEIDIIIGTHKILSKK 699 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 L L+I+DE+ RFGV+++ KL + + L ++ATPIPR+L ++ + DIS + Sbjct: 700 FSCKNLGLIIIDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLK 759 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R I+ + + I IE LS + + + IEE ++++E+ Sbjct: 760 IPPKNRIKIEAYLESFSELLIKHAIEN---ELSRDGQVFLVNHNIEEL--YYLKTLIEKL 814 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + IAIIHG+++ I+ E++M F ++L+ATT+IE GID+ +A+ III N Sbjct: 815 TPY-----ARIAIIHGKLTGIEIENIMHDFIKKAYQILLATTIIENGIDIPNANTIIINN 869 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622 A FGLAQL+QL+GRVGRG + + LY L++ S RL + D GF IA Sbjct: 870 ANKFGLAQLYQLKGRVGRGSKKAYAYFLYQDSEKLNERSIERLRAITEFSDLGAGFKIAM 929 Query: 623 EDLKQRKEGEILGIKQSG 640 +D++ R G +LG +Q G Sbjct: 930 KDMEIRGVGNLLGREQHG 947 >gi|269837730|ref|YP_003319958.1| transcription-repair coupling factor [Sphaerobacter thermophilus DSM 20745] gi|269786993|gb|ACZ39136.1| transcription-repair coupling factor [Sphaerobacter thermophilus DSM 20745] Length = 1173 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 137/395 (34%), Positives = 212/395 (53%), Gaps = 15/395 (3%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G+ + +++ + P+ T Q AI+++ DM + M R++ GDVG GKT VAL Sbjct: 608 GVAFGPDTDWDRELEESFPYVETPGQLQAIREVKADMEKPRPMDRLVCGDVGYGKTEVAL 667 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A AV G Q I+ P ILA QHY + + +E+++ + + + L+++ Sbjct: 668 RAAFKAVNNGYQVAILVPTTILALQHYHTFRSRLAPFPVRIEMLSRLRSRKEQTQILQQL 727 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 G+ +IIGTH L Q +++ KL LVI+DE+ RFGV + + T VL MTATPI Sbjct: 728 ERGEIDVIIGTHRLLQRDVRFKKLGLVIIDEEQRFGVAHKEHFKRLRTNVDVLTMTATPI 787 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICP 490 PRTL + G D+S IT P R PI+T + N D +I E + +S G + Y++ Sbjct: 788 PRTLYMALSGIRDLSVITTPPQERTPIRTFVTASN--DSLIREAILREISRGGQVYFVHN 845 Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550 +++ + V+ER L + + HG+M + + E +M +F +L+ TT+ Sbjct: 846 RVQ-----SIYHVLERLEKLVPE--ARFGVGHGQMDEDELEQLMLAFMQHEFDVLVCTTI 898 Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRL 608 IE G+D+ + + III+ A GL QL+QLRGRVGR + +LY PLS + RL Sbjct: 899 IESGVDIPNVNTIIIDRAHQLGLTQLYQLRGRVGRSHHRAYAYVLYDANVPLSAEAVARL 958 Query: 609 SVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 ++ + GF IA DL+ R G +LG +QSG Sbjct: 959 EAIQEATELGAGFQIALRDLEIRGAGNVLGPEQSG 993 >gi|329897463|ref|ZP_08272106.1| Transcription-repair coupling factor [gamma proteobacterium IMCC3088] gi|328921160|gb|EGG28563.1| Transcription-repair coupling factor [gamma proteobacterium IMCC3088] Length = 1150 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 139/406 (34%), Positives = 213/406 (52%), Gaps = 27/406 (6%) Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 RK F E+ P++ E + PF T Q AI+ + DM + M R++ GDVG Sbjct: 579 RKGFAHELD-PLDYE-----RFCSGFPFEETPDQALAIEAVRNDMCAQKVMDRLVCGDVG 632 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363 GKT VA+ A A Q ++ P +LAQQHY + V +++ + Sbjct: 633 FGKTEVAMRAAFIASHNSKQVAVLVPTTLLAQQHYHSFCDRFAGWDVKVAVVSRFNSASQ 692 Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423 + + +A G+ I++GTH L +++ L L+I+DE+HRFGV+Q+ L T + Sbjct: 693 NKAIMADLASGKIDILVGTHKLLSPDVKFADLGLLIIDEEHRFGVKQKETLKALRTEVDI 752 Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSE 481 L +TATPIPRTL + G D+S I PA R IKT + N I E I R + Sbjct: 753 LTLTATPIPRTLNMALGGMRDLSVIATPPAKRLSIKTFVREHNTSMIKEAILRETL---R 809 Query: 482 GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 G + Y++ +++ E+ +++V +A+ HG+ + + E +M F + Sbjct: 810 GGQVYYLHNEVKTIEETARKLQAMVPDLK---------VAVAHGQQHETELERIMSDFYH 860 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP- 598 +L+ TT+IE GIDV +A+ II++ A+ GLAQLHQLRGRVGR + LL P Sbjct: 861 QRFHILVCTTIIETGIDVPNANTIIMDRADRLGLAQLHQLRGRVGRSHHQAYAYLLCPPR 920 Query: 599 -PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 L+K++ RL ++ D G+L+A +DL+ R GE+LG QSG Sbjct: 921 SGLTKDAEKRLEAIEAAGDLGAGYLLATQDLEIRGAGELLGDDQSG 966 >gi|294674288|ref|YP_003574904.1| transcription-repair coupling factor [Prevotella ruminicola 23] gi|294471847|gb|ADE81236.1| transcription-repair coupling factor [Prevotella ruminicola 23] Length = 1122 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 137/401 (34%), Positives = 215/401 (53%), Gaps = 17/401 (4%) Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 +KE G + + + ++ + + T Q A +D+ DM + M R++ GDVG GKT Sbjct: 518 RKEKGFAFSRDSYLQHELEASFLYEDTPDQLKATQDVKADMEKARPMDRLVCGDVGFGKT 577 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 VA+ A A G Q ++ P +LA QH+ ++ + V+ +T + Sbjct: 578 EVAVRAAFKAAVDGKQVAVLVPTTVLAYQHFRTFSNRLKDMPVTVDYLTRARTTKDTNRI 637 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 + +A G+ IIIGTH L S+++ L L+I+DE+ +FGV + KL Q T+ L M+ Sbjct: 638 QKDLAEGKIDIIIGTHRLISKSVKFKDLGLLIIDEEQKFGVSTKEKLRQMKTSVDTLTMS 697 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAY 486 ATPIPRTL + +G D+S I P R PI+T I + E+I E + +S + Y Sbjct: 698 ATPIPRTLQFSLVGARDLSVIQTPPPNRYPIQTEIHTFS--PEIIAEAVNYEMSRNGQVY 755 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 ++ +I + + + +++++ + I I HG+M + E ++ F N +L+ Sbjct: 756 FVNNRISDLQ--HIAEIIQKYVP-----DARICIGHGQMKPEELEKIILDFSNYDYDILL 808 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK---N 603 +TT++E GID+ +A+ III A +FGL+ LHQ+RGRVGRG + C LL PPLS Sbjct: 809 STTIVENGIDIPNANTIIINGAHNFGLSDLHQMRGRVGRGNRKAFCYLL-APPLSALNPE 867 Query: 604 SYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 S RL L+N D G IA +DL R G +LG +QSG Sbjct: 868 SRRRLEALENFSDLGSGINIAMQDLDIRGAGNLLGSEQSGF 908 >gi|72382209|ref|YP_291564.1| transcriptional-repair coupling factor [Prochlorococcus marinus str. NATL2A] gi|72002059|gb|AAZ57861.1| transcription-repair coupling factor [Prochlorococcus marinus str. NATL2A] Length = 1167 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 137/435 (31%), Positives = 235/435 (54%), Gaps = 20/435 (4%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 I L+ + + KE G +G ++ + P++ T Q +A + DM + M R+ Sbjct: 586 IDLIKLYAERSKEKGYKFPCDGPWQNELEDSFPYALTPDQATATSQVKSDMESEKPMDRL 645 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 + GDVG GKT VA+ A+ A+ +G Q ++AP +L+QQH+ I I V ++ Sbjct: 646 VCGDVGFGKTEVAIRAIFKAITSGKQIALLAPTTVLSQQHWRTISDRFAPYPIKVSLLNR 705 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 + ++ + + GQ ++GTH L + Y L L+++DE+ RFGV Q+ K+ + Sbjct: 706 FKTNSEKKHIVSGLKDGQIDAVVGTHQLLNKKLVYKDLGLLVIDEEQRFGVNQKEKIKEL 765 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LK 476 + VL ++ATPIPRTL ++ G ++S IT P R+PIKT + P++ +E+I + Sbjct: 766 KKSVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPIKTHLAPLD--NEIIRSAIS 823 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 + G + ++I P+I+ V E+ + + + I HG+M + E+ M + Sbjct: 824 QEIDRGGQIFYIVPRIK-----GIEDVAEKLKIMIPNV--KLLIAHGQMEEGALENAMLA 876 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F G +L+ TT++E G+D+ + I+IE++ FGL+QL+QLRGRVGR + + L+ Sbjct: 877 FNAGEADILLCTTIVESGLDIPRVNTILIEDSHKFGLSQLYQLRGRVGRS-GVQAHAWLF 935 Query: 597 HPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK---FLIA 647 +P L++ S RL +K D G+ +A D++ R G ILGI+QSG + F + Sbjct: 936 YPSDEKLNETSRQRLKAIKEFSDLGSGYQLAMRDMEIRGVGNILGIEQSGQMETIGFDLY 995 Query: 648 QPELHDSLLEIARKD 662 L +++ EI +D Sbjct: 996 MELLQETIAEIQGQD 1010 >gi|295136419|ref|YP_003587095.1| transcription-repair coupling factor [Zunongwangia profunda SM-A87] gi|294984434|gb|ADF54899.1| transcription-repair coupling factor [Zunongwangia profunda SM-A87] Length = 1126 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 138/429 (32%), Positives = 230/429 (53%), Gaps = 19/429 (4%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W + ++ A + +A + L +++ +K G + + ++ + + T Q + Sbjct: 507 WKNLKKKTKARVKHIAYNLIELYAKRRLQK--GFAYGPDSYLQHELEASFIYEDTPDQST 564 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 A + + +DM + M R++ GDVG GKT VA+ A AV+ G Q ++ P ILA QH++ Sbjct: 565 ATEAVKKDMENERPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPTTILAFQHHQ 624 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 + ++ + V+ + RR+ L + G+ IIIGTH L ++++ L L+I Sbjct: 625 TFSERLKDLPVTVDYLNRFRTAKERRETLADLESGRVDIIIGTHQLVNKAVKFKDLGLLI 684 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 VDE+ +FGV + KL L +TATPIPRTL + + D+S IT P R PI+ Sbjct: 685 VDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTLQFSLMAARDLSTITTPPPNRYPIE 744 Query: 460 TVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517 + +I R E R V+ + G + ++I +IE KE +++R + Sbjct: 745 SNVI---RFSEETIRDAVLYEIQRGGQVFFIHNRIENIKE--VAGMIQRLVP-----DAK 794 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 + I HG+M E +M SF NG +L++TT+IE G+DV +A+ I I NA +FGL+ LH Sbjct: 795 VGIGHGQMEGKKLEKLMLSFINGEFDVLVSTTIIESGLDVTNANTIFINNANNFGLSDLH 854 Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632 Q+RGRVGR + + C + P +++ + R++ L+ + GF IA +DL+ R G+ Sbjct: 855 QMRGRVGRSNKKAFCYFITPPYSAMTEEARKRMTALEQFSELGSGFNIAMKDLEIRGAGD 914 Query: 633 ILGIKQSGM 641 +LG +QSG Sbjct: 915 LLGGEQSGF 923 >gi|320537605|ref|ZP_08037541.1| transcription-repair coupling factor [Treponema phagedenis F0421] gi|320145523|gb|EFW37203.1| transcription-repair coupling factor [Treponema phagedenis F0421] Length = 1148 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 129/378 (34%), Positives = 220/378 (58%), Gaps = 17/378 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q + + ++ DM + M R++ GDVG GKT VA+ A A+ G Q ++P Sbjct: 606 PYEETDDQLTCVAEVKADMEKPVPMDRLVCGDVGYGKTEVAMRAAFKAIMGGKQVAFLSP 665 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILA+QH+E + + +N + V ++ + ++ ++K LE++ +G I++GTH + Q Sbjct: 666 TTILAEQHFETLDERFKNFPVTVARMSRFITRSEQKKILEQLKNGDIDILVGTHRIIQKD 725 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGV+ + +L Q T L ++ATPIPRTL ++ L D+S +T Sbjct: 726 VVFKDLGLMIIDEEQRFGVKDKERLKQMKTNVDCLALSATPIPRTLHMSLLKIRDMSLLT 785 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P R+PI+TVI + ++V ++ + G + +++ ++E E+ Sbjct: 786 TPPQNRRPIETVIQEFDP-EKVAAAIRQEVERGGQVFYLHNRVETLDET---------AR 835 Query: 510 LHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + ++ + I HG+M+ + E + F G +LIATT+IE GID+ +A+ III+ Sbjct: 836 MLQNLVPEVLIDSAHGQMNSDELEDIFKRFNMGGFHVLIATTIIENGIDIPNANTIIIDR 895 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAE 622 A+ +G++QL+QLRGRVGR ++ + LLY LS+ + RL V+ + TE GF IA Sbjct: 896 ADMYGVSQLYQLRGRVGRSDKKAYAYLLYPKDRALSEIAMKRLQVISDFTELGSGFKIAM 955 Query: 623 EDLKQRKEGEILGIKQSG 640 +D++ R G +LG +QSG Sbjct: 956 KDMEIRGAGNLLGREQSG 973 >gi|221632687|ref|YP_002521908.1| transcription-repair coupling factor [Thermomicrobium roseum DSM 5159] gi|221157121|gb|ACM06248.1| transcription-repair coupling factor [Thermomicrobium roseum DSM 5159] Length = 1165 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 137/395 (34%), Positives = 206/395 (52%), Gaps = 15/395 (3%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 GI + + +++ + P+ T Q AI+++ DM + M R+L GDVG GKT VAL Sbjct: 593 GIAFGPDTQWDRELEESFPYEETPDQWRAIQEVKADMERPRPMDRLLCGDVGFGKTEVAL 652 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A AV G Q I+ P +LA QHY ++ + + +E+++ + +R +E + Sbjct: 653 RAAFKAVNNGYQVAILVPTTVLALQHYNTFRERLASYPVRIEMLSRLRSKREQRAIIEGL 712 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 G I+IGTH L Q + + +L LVI+DE+HRFGV + + T VL MTATPI Sbjct: 713 RAGTVDIVIGTHRLLQRDVAFKRLGLVIIDEEHRFGVAHKEHFKRLRTNVDVLTMTATPI 772 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICP 490 PRTL L G D+S I P R P++T + P D VI E + ++ G + Y Sbjct: 773 PRTLYLALSGVRDLSVIATPPVDRTPVRTFVTPAR--DSVIREAILREIARGGQVY---- 826 Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550 + + + +R L + A+ HG+M + + E ++ F +LI T + Sbjct: 827 -VVHNRVHSILDFAQRLRGLVPE--ARFAVAHGQMPEQELERIIVDFIERKYDVLICTAI 883 Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRL 608 IE G+D+ + III+ A+ GL QL+QLRGRVGR + + LLY PLS + RL Sbjct: 884 IESGVDIPSVNTIIIDQAQQLGLTQLYQLRGRVGRSHQRAYAYLLYDDRRPLSAEARARL 943 Query: 609 SVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 ++ + G IA DL+ R G ILG +QSG Sbjct: 944 EAIQEATELGAGLQIALRDLEIRGAGNILGPEQSG 978 >gi|288802661|ref|ZP_06408099.1| transcription-repair coupling factor [Prevotella melaninogenica D18] gi|288334811|gb|EFC73248.1| transcription-repair coupling factor [Prevotella melaninogenica D18] Length = 1118 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 140/435 (32%), Positives = 233/435 (53%), Gaps = 20/435 (4%) Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 ++E G + + + ++ + + T Q A +++ QDM M R++ GDVG GKT Sbjct: 531 RREKGFAFSPDSFMQHELEASFLYEDTPDQLKATQELKQDMESARPMDRLVCGDVGFGKT 590 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 VA+ A A Q ++ P +LA QHY+ KK ++ + V+ ++ ++ Sbjct: 591 EVAIRAAFKAAVDNKQVAVLVPTTVLAFQHYQTFKKRLKDMPVRVDYLSRARSAKQTKQV 650 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 LE +A G+ I++GTH L S++++ L L+I+DE+ +FGV + KL Q T L M+ Sbjct: 651 LEDLAEGKIDILVGTHKLIGKSVKWHDLGLLIIDEEQKFGVSTKEKLRQLKTNVDTLTMS 710 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAY 486 ATPIPRTL + +G D+S + P R PI+T I + EVI + + +S + Y Sbjct: 711 ATPIPRTLQFSLMGARDMSIMRTPPPNRYPIQTEIASFSH--EVIADAINFEMSRNGQVY 768 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLL 545 ++ +I SN + N + ++ IAI HG+M + E ++ F N +L Sbjct: 769 FVNDRI-----SNLPEIA---NLIKKYVPDCRIAIGHGQMKPEELEEIVMGFMNYDYDVL 820 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKN 603 ++TT++E GID+ +A+ III +A FGL+ LHQ+RGRVGR + + C LL P L+ Sbjct: 821 LSTTIVENGIDISNANTIIINDAHRFGLSDLHQMRGRVGRSNKKAFCYLLAPPLAALNPE 880 Query: 604 SYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFL---IAQPELHDSLLE 657 + RL L+ D GF +A +DL R G +LG +QSG + L Q L+ +++E Sbjct: 881 ARRRLEALETFSDLGSGFNLAMQDLDIRGAGNLLGSEQSGFMEDLGYETYQKILNQAVME 940 Query: 658 IARKDAKHILTQDPD 672 + + + + ++ D Sbjct: 941 LKNDEFQDLYEEEMD 955 >gi|94310893|ref|YP_584103.1| transcription-repair coupling factor [Cupriavidus metallidurans CH34] gi|93354745|gb|ABF08834.1| transcription-repair coupling factor [Cupriavidus metallidurans CH34] Length = 1150 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 147/431 (34%), Positives = 224/431 (51%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W R A ++ L R+ ++ P+ + K + + F T Q Sbjct: 557 QWDKAKRRAAQQIRDTAAELLNLYARRALREGFAFPL--QPKDYEAFAESFGFEETPDQA 614 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q ++AP +LA+QH+ Sbjct: 615 AAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVLGGKQVAMLAPTTLLAEQHF 674 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + + ++ + A+++I G I+IGTH L D +++ +L LV Sbjct: 675 QTLSDRFAEWPVRIVELSRFKTKKEIDAAIKQINEGTVDIVIGTHKLLSDEVKFQRLGLV 734 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+HRFGV+Q+ L VL +TATPIPRTL + G D S I P R I Sbjct: 735 IIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 794 Query: 459 KTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 KT + R ++ + R ++ L G + Y++ ++E E K + +V Sbjct: 795 KTF---VRREEDGVIREAILRELKRGGQVYFLHNEVETIENKRAKLAELVPE-------- 843 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA+ HG+M + + E VM F + +L+ TT+IE GIDV A+ I+I A+ FGLA Sbjct: 844 -ARIAVAHGQMHERELERVMRDFVSRRDNILLCTTIIETGIDVPTANTILIHRADKFGLA 902 Query: 575 QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629 QLHQLRGRVGR + LL H L++ + RL ++ E+ GF +A DL+ R Sbjct: 903 QLHQLRGRVGRSHHQAYAYLLVHDVEGLTRQAQRRLEAIQQMEELGSGFYLAMHDLEIRG 962 Query: 630 EGEILGIKQSG 640 GE+LG KQSG Sbjct: 963 AGEVLGDKQSG 973 >gi|295425671|ref|ZP_06818358.1| transcription-repair coupling factor [Lactobacillus amylolyticus DSM 11664] gi|295064687|gb|EFG55608.1| transcription-repair coupling factor [Lactobacillus amylolyticus DSM 11664] Length = 1165 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 142/431 (32%), Positives = 229/431 (53%), Gaps = 21/431 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW R+ + E +A + L ++ +K G + + ++ +K P+ T Q Sbjct: 563 EWAKTKRKVQSKVEDIADDLINLYAARESEK--GFAFSPDDELQRKFDDAFPYVETPDQL 620 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +IK+I DM + M R+L GDVG GKT VAL A A++ Q + P ILAQQHY Sbjct: 621 RSIKEIKADMEKPKPMDRLLVGDVGFGKTEVALRAAFKAIQDNKQVAFLVPTTILAQQHY 680 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E I+ ++ + +++ A +K + + G+ +++GTH + + + L L+ Sbjct: 681 ETIQDRFKDFPVNTAMLSRFQTPAESKKIIAGLEDGKIDLVVGTHRILSKDVHFKDLGLL 740 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + KL Q VL +TATPIPRTL ++ +G D+S + P R PI Sbjct: 741 IIDEEQRFGVKHKEKLKQMKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800 Query: 459 KTVII---PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 +T ++ P D + ++ G + +++ +I + E VV R L + Sbjct: 801 QTYVMEQTPSVIRDACLREMQ----RGGQVFYLHNRIGDIDE-----VVARLEKLLPN-- 849 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + IA HGRMS E ++ F N +L+ TT+IE GID+ + + +IIE+A+H+GL+Q Sbjct: 850 ARIASAHGRMSQNQLEDILYRFLNREFDVLVTTTIIETGIDMPNVNTMIIEDADHYGLSQ 909 Query: 576 LHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGR+GR ++ LY + L++ RL +++ TE GF IA DL R Sbjct: 910 LYQLRGRIGRSARLAYAYFLYKQNKVLTEVREKRLDAIRDFTELGSGFKIAMRDLAIRGA 969 Query: 631 GEILGIKQSGM 641 G +LG +Q G Sbjct: 970 GNMLGSQQHGF 980 >gi|320105780|ref|YP_004181370.1| transcription-repair coupling factor [Terriglobus saanensis SP1PR4] gi|319924301|gb|ADV81376.1| transcription-repair coupling factor [Terriglobus saanensis SP1PR4] Length = 1210 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 149/429 (34%), Positives = 228/429 (53%), Gaps = 21/429 (4%) Query: 220 WT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 W + AR + A ++ A + L R+ + + P N + ++ F+ T Q Sbjct: 601 WAKTKARVKKAMQDMTAELLKLYAQRQSAEGFVFAPDN---NLQREFEDAFDFNETDDQL 657 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 SAI DI +DM M R+L GDVG GKT VA+ A AV+ Q ++ P +L+ QHY Sbjct: 658 SAIADIKRDMESTQPMDRLLCGDVGYGKTEVAMRAAFKAVQDSKQVAVLTPTTVLSFQHY 717 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + KK + VE+I+ ++K LE +A G+ I+IGTH L I + L L+ Sbjct: 718 QSFKKRFARFPVNVEMISRFRTAKEQKKILEDVADGKVDILIGTHRLLSKDIAFQDLGLL 777 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 +VDE+ RFGV+ + +L Q A VL M+ATPIPRTL ++ LG D+S I P R I Sbjct: 778 VVDEEQRFGVRHKERLKQMRAAIDVLAMSATPIPRTLHMSLLGLRDMSVIETPPKDRMAI 837 Query: 459 KTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T++ + DE + R +++ L + Y++ ++E + + L H + Sbjct: 838 QTIVA---KFDEKLVRTAIEMELERSGQIYFVHNRVE-----TIYDLASQIRELVPH--A 887 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 + HG+M + + E M +F N +L AT++IE G+D+ A+ III A+ GL++L Sbjct: 888 RVITAHGQMGEGELEKAMLAFMNYEFDVLCATSIIENGLDIPRANTIIINRADRHGLSEL 947 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 +QLRGRVGR + LL P L++ + RL+ LK D GF IA DL+ R G Sbjct: 948 YQLRGRVGRANRRAYAYLLIPPDNELTEVARRRLAALKEFSDLGAGFKIAALDLELRGAG 1007 Query: 632 EILGIKQSG 640 +LG +QSG Sbjct: 1008 NMLGGEQSG 1016 >gi|323136889|ref|ZP_08071969.1| transcription-repair coupling factor [Methylocystis sp. ATCC 49242] gi|322397650|gb|EFY00172.1| transcription-repair coupling factor [Methylocystis sp. ATCC 49242] Length = 1181 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 134/382 (35%), Positives = 213/382 (55%), Gaps = 23/382 (6%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 P+ T+ Q +AI+ +L D++ M R++ GDVG GKT VAL A A G Q ++A Sbjct: 628 FPYDETEDQLAAIEAVLDDLASGRPMDRLVCGDVGFGKTEVALRAAFCAAINGKQVAVVA 687 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LA+QHY+ + I + ++ + A R+ + + G+ I++GTHA+ Sbjct: 688 PTTLLARQHYKTFSERFAGLPIKIGRLSRMVGAAEARETKKELGEGKVDILVGTHAILGK 747 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 + + L LVI+DE+ FGV + +L + HVL ++ATPIPRTL L G ++S I Sbjct: 748 GVNFKDLGLVIIDEEQHFGVGHKERLKELRAEVHVLTLSATPIPRTLQLAMTGVRELSLI 807 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505 T P R +++ I P D +I R + +L E G +A+++CP+IE+ +E+ + Sbjct: 808 TTPPVDRLAVRSFISP---FDPLIVR-EALLRERYRGGQAFFVCPRIEDLEEA---AAFL 860 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 R N F I HG+MS + E M +F +G +L++TT++E G+D+ A+ +I+ Sbjct: 861 RENLAEAKFV----IAHGQMSPSELEDKMSAFYDGRFDILLSTTIVESGLDIPSANTLIV 916 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK----NSYTRLSVLKNTED---GF 618 A+ FGLAQL+QLRGRVGR + + L+ P ++ + RL VL+ + GF Sbjct: 917 WRADMFGLAQLYQLRGRVGRSK--TRAYALFTTPANRAITPQAQKRLEVLQTLDTLGAGF 974 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 +A DL R G +LG +QSG Sbjct: 975 QLASHDLDIRGAGNLLGEEQSG 996 >gi|154248182|ref|YP_001419140.1| transcription-repair coupling factor [Xanthobacter autotrophicus Py2] gi|154162267|gb|ABS69483.1| transcription-repair coupling factor [Xanthobacter autotrophicus Py2] Length = 1168 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 137/385 (35%), Positives = 209/385 (54%), Gaps = 31/385 (8%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q++AI +L D++ + M R++ GDVG GKT VAL A A +G Q ++ P Sbjct: 617 PYEETDDQDAAIDAVLDDLASGHPMDRLICGDVGFGKTEVALRAAFAVALSGKQVAVVVP 676 Query: 330 IGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +LA+QH+ E K N ++TG A ++ IA G I++GTHAL Sbjct: 677 TTLLARQHFKTFSERFKGLPVNVAQASRMVTGKDLTAVKKG----IADGTVDIVVGTHAL 732 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445 +I + L LVIVDE+ FGV + +L Q HVL +TATPIPRTL L G ++ Sbjct: 733 LGKAISFKDLGLVIVDEEQHFGVSHKERLKQLRAEVHVLTLTATPIPRTLQLAMTGVREL 792 Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 S I P R ++T I P + + V E L G +++++ P+IE+ E Sbjct: 793 SIIATPPVDRLAVRTFITPFDPL-VVREALLRERYRGGQSFYVVPRIEDLAE-------- 843 Query: 506 RFNSLHEHFTSS-----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560 + E +S +A+ HG+++ E +M +F +G +L++TT++E G+DV +A Sbjct: 844 ----VREFLAASVPEVKVAVAHGQLAAGALEDIMTAFYDGQYDVLLSTTIVESGLDVPNA 899 Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED-- 616 + +I+ A+ FGLAQL+QLRGRVGR + + I P++ + RL VL++ E Sbjct: 900 NTLIVHRADMFGLAQLYQLRGRVGRAKARAYAIFTVPATKPMTVQAERRLKVLQSLETLG 959 Query: 617 -GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL R G +LG +QSG Sbjct: 960 AGFQLASHDLDIRGAGNLLGDEQSG 984 >gi|298483734|ref|ZP_07001908.1| transcription-repair coupling factor [Bacteroides sp. D22] gi|298270151|gb|EFI11738.1| transcription-repair coupling factor [Bacteroides sp. D22] Length = 1141 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 140/410 (34%), Positives = 218/410 (53%), Gaps = 19/410 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + Q ++E G + + + +++ + + T Q A D+ DM M R++ Sbjct: 543 LIKLYSQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSKATIDVKADMESDRPMDRLVC 602 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LA QH++ ++ + VE ++ Sbjct: 603 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRERLKGLPCRVEYLSRAR 662 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A + L+ + G I+IGTH + +Q+ L L+IVDE+ +FGV + KL Q Sbjct: 663 TAAQTKAVLKGLKDGDVGILIGTHRILGKDVQFKDLGLLIVDEEQKFGVSVKEKLRQLKV 722 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478 L MTATPIPRTL + +G D+S I+ P R PI+T + N +EVI + + Sbjct: 723 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFN--EEVITDAINFE 780 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537 +S + +++ +I E ++++ER H +AI HG+M + E ++ F Sbjct: 781 MSRNGQVFFVNNRIANLPE--LKAMIER------HIPDCRVAIGHGQMEPTELEKIILDF 832 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 N +L+ATT+IE GID+ +A+ III A++FGL+ LHQ+RGRVGR + + C LL Sbjct: 833 VNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-A 891 Query: 598 PPLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 PPLS RL ++N D G IA +DL R G +LG +QSG Sbjct: 892 PPLSSLTTEGRRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGF 941 >gi|2073486|emb|CAA72474.1| transcription repair coupling factor [Rickettsia prowazekii] Length = 989 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 147/441 (33%), Positives = 240/441 (54%), Gaps = 39/441 (8%) Query: 237 QIALLLMRKQFKKEIGI--PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 +I+L L++ K+++ I PI ++ + K N PFS T+ Q +AI DI +D++ M Sbjct: 408 EISLHLIQIAAKRKLNISTPIELDLEAYDKFCANFPFSETEDQLTAINDIREDLTNGMLM 467 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHY----EFIKKYTQ 346 R++ GDVG GKT VA+ A+ ++ Q ++ P IL QH+ E K + Sbjct: 468 DRLICGDVGFGKTEVAMRAVFMVAKSLNEYLPQVAVVVPTTILCSQHFSRFIERFKGFGL 527 Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 N + + +I+ R + +A G+ +IIIGTHAL + +++ L L+I+DE+ F Sbjct: 528 NIKQLSSVISSKEANIIRLE----LASGKINIIIGTHALLHKNTKFFNLKLLIIDEEQHF 583 Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466 GV Q+ L ++ HVL M+ATPIPRTL ++ G ++S I P R ++T ++P Sbjct: 584 GVSQKEFLKSLKSSTHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTSVMP-- 641 Query: 467 RIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAII 521 D VI R +L E G +++++ P+I+ E E + +V S I Sbjct: 642 -FDPVIIR-DALLREHFRGGRSFYVAPRIKDMEDIEKQLKQIVPEL---------SYKIA 690 Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581 HG+M+ + VM F G +LI+TT+IE GID+ +A+ +II A+ GL+QL+QLRG Sbjct: 691 HGKMTPSKIDEVMSEFYVGKFDILISTTIIESGIDIAEANTMIIHKADTLGLSQLYQLRG 750 Query: 582 RVGRGE--EISSCILLYHPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGI 636 R+GRG+ + + + ++ +S RL +++N+ GF IA D R G ++G Sbjct: 751 RIGRGKIRGYAYLTVASNKKITSHSLRRLEIIQNSCSLGSGFTIASHDADLRGFGNLIGE 810 Query: 637 KQSGMPKFLIAQPELHDSLLE 657 +QSG K + EL+ +LE Sbjct: 811 EQSGQIKEV--GTELYQEMLE 829 >gi|317402005|gb|EFV82605.1| transcription-repair coupling factor [Achromobacter xylosoxidans C54] Length = 1160 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 145/408 (35%), Positives = 208/408 (50%), Gaps = 17/408 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q G N+ Q F T Q +AI+ ++ DM+ M R++ Sbjct: 586 LLALYAQRAAREGFAFNLPLNDYQAFAEGFGFEETADQAAAIEAVIADMTSGRPMDRLVC 645 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VAL A AV G Q ++ P +LA+QH + + + V ++ Sbjct: 646 GDVGFGKTEVALRAAFLAVANGKQVALLCPTTLLAEQHAQTFSDRFADWPVRVVELSRFR 705 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A+E I G+ I+IGTH + +++ +L LVI+DE+HRFGV+Q+ L Sbjct: 706 SAKEVSAAIEGINDGRVDIVIGTHKILSKDVKFKRLGLVIIDEEHRFGVRQKEALKALRA 765 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV- 478 VL +TATPIPRTL ++ G D S I P R IKT + R D R ++ Sbjct: 766 EVDVLTLTATPIPRTLGMSLEGIRDFSVIATAPQKRLAIKTFV---RREDGSTLREALLR 822 Query: 479 -LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537 L G + Y++ ++E N R+ +E + IA+ HG+M + D E VM F Sbjct: 823 ELKRGGQCYFLHNEVETIH--NRRARLEELVP-----EARIAVAHGQMPERDLEQVMKGF 875 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY- 596 +L+ TT+IE GIDV A+ I+I A+ FGLAQLHQLRGRVGR + LL Sbjct: 876 YQQRYNVLLCTTIIETGIDVPSANTIVIHRADRFGLAQLHQLRGRVGRSHHQAYAYLLTP 935 Query: 597 -HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 ++ N+ RL ++ E+ GF +A DL+ R GE+LG QSG Sbjct: 936 GEDAITSNAKKRLEAIQAMEELGSGFYLAMHDLEIRGTGEVLGDSQSG 983 >gi|303239799|ref|ZP_07326323.1| transcription-repair coupling factor [Acetivibrio cellulolyticus CD2] gi|302592736|gb|EFL62460.1| transcription-repair coupling factor [Acetivibrio cellulolyticus CD2] Length = 1177 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 131/379 (34%), Positives = 211/379 (55%), Gaps = 19/379 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q I++I +DM M R+L GDVG GKT VA+ A+ AV G Q + P Sbjct: 632 PYQETDDQLKCIEEIKRDMESNKPMDRLLCGDVGYGKTEVAIRAIFKAVMDGKQVAYLVP 691 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQ Y K+ ++ + VE+++ Q ++ L+ + G ++IGTH L Q Sbjct: 692 TTVLAQQQYNNFKERMKDFPVTVEMVSRFRTQTEQKHILKDVKAGMVDVLIGTHRLLQKD 751 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I + L L+++DE+ RFGV + K+ VL +TATPIPRTL ++ +G DIS I Sbjct: 752 IAFKNLGLLVIDEEQRFGVMHKEKIKNMRANVDVLTLTATPIPRTLHMSMVGIKDISTIE 811 Query: 450 EKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVER 506 + P R P++T ++ N +EVI E + ++ + +++ ++ K + +++V Sbjct: 812 DPPEERYPVQTYVMEHN--NEVIKEAINREMARNGQVFYLYNRVRSINVKAAEIKNMVP- 868 Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 + IA+ HG+M++ + E +M F NG +L+ T +IE G+D+ + + II+E Sbjct: 869 --------DARIAVAHGQMNESELEDIMFRFINGEYDVLVCTVIIESGLDMPNVNTIIVE 920 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIA 621 +++ GLAQL+QLRGRVGR ++ + Y LS+ + RL +K TE GF IA Sbjct: 921 DSDKMGLAQLYQLRGRVGRSNRMAYAYITYKKDKVLSEIAEKRLQAIKEFTEFGSGFKIA 980 Query: 622 EEDLKQRKEGEILGIKQSG 640 DL+ R G +LG +Q G Sbjct: 981 MRDLQIRGAGNLLGAQQHG 999 >gi|15836650|ref|NP_297338.1| transcription-repair coupling factor [Xylella fastidiosa 9a5c] gi|9104811|gb|AAF82858.1|AE003858_12 transcription-repair coupling factor [Xylella fastidiosa 9a5c] Length = 1193 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 141/431 (32%), Positives = 229/431 (53%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W+ R+ +A ++ + R+Q + G+ + ++ + + PF T Q Sbjct: 597 QWSKAKRKAAEKVRDVAAELLEIQARRQARA--GLALRIDRTMYEPFAAGFPFEETPDQL 654 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI+ L+D+ M R++ GDVG GKT VA+ A AA AG Q ++ P +LA+QHY Sbjct: 655 AAIETTLRDLQSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVLVPTTLLAEQHY 714 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + I VE+++ + L++++ G +I+GTH L Q +++ L LV Sbjct: 715 RNFRDRFADYPIRVEVLSRFKSTKEIKAELQKVSEGTMDVIVGTHRLLQPDVKFKDLGLV 774 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+Q+ L H+L +TATPIPRTL + G D+S I P R + Sbjct: 775 IVDEEQRFGVRQKEALKSLRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPLNRLAV 834 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVERFNSLHEHF 514 +T I P + + E +R L+ G + Y++ +E + + + +V Sbjct: 835 QTFITPWDNALLHEAFQR---ELARGGQLYFLHNDVESIGRMQRDLAQLVPE-------- 883 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + I I HG+M + + E VM F+ +L++TT+IE GID+ +A+ III A+ FGLA Sbjct: 884 -ARIGIAHGQMPERELERVMLDFQKQHFNVLLSTTIIESGIDIPNANTIIINRADRFGLA 942 Query: 575 QLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629 QLHQLRGRVGR + L+ ++ ++ RL + + ++ GF +A DL+ R Sbjct: 943 QLHQLRGRVGRSHHRAYAYLVVPDRRSMTADAEKRLEAIASMDELGAGFTLATHDLEIRG 1002 Query: 630 EGEILGIKQSG 640 GE+LG QSG Sbjct: 1003 AGELLGEDQSG 1013 >gi|67458759|ref|YP_246383.1| transcription-repair coupling factor [Rickettsia felis URRWXCal2] gi|75536784|sp|Q4UMJ0|MFD_RICFE RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|67004292|gb|AAY61218.1| Transcription-repair coupling factor [Rickettsia felis URRWXCal2] Length = 1142 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 145/441 (32%), Positives = 239/441 (54%), Gaps = 39/441 (8%) Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQ--KILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 +IAL L++ K+++ +VE + + K N PFS T+ Q +AI DI +D+ M Sbjct: 540 EIALHLIQIAAKRKLNSSASVEFDLEEYDKFCANFPFSETEDQLTAINDIKEDLRNGMLM 599 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHY----EFIKKYTQ 346 R++ GDVG GKT VA+ A+ ++ Q ++ P IL QH+ E K + Sbjct: 600 DRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQHFSRFIERFKGFGL 659 Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 N + + +I+ + R + + G+ +IIIGTH+L + +++ L L+I+DE+ F Sbjct: 660 NIKQLSSVISAKEAKIIRSE----LESGKINIIIGTHSLLHKNTKFFNLKLLIIDEEQHF 715 Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466 GV Q+ L ++ HVL M+ATPIPRTL ++ G ++S I P R ++T+++P Sbjct: 716 GVGQKEFLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTMVMP-- 773 Query: 467 RIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAII 521 D VI R +L E G +++++ P+I+ E E + +V S I Sbjct: 774 -FDPVIIR-DALLREHFRGGRSFYVVPRIKDIEDIEKQLKQIVPEL---------SYKIA 822 Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581 HG+M+ + VM F G +L++TT+IE GID+ +A+ ++I A+ GL+QL+QLRG Sbjct: 823 HGKMTPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANTMVIHKADMLGLSQLYQLRG 882 Query: 582 RVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGI 636 R+GRG+ L H ++ +S RL +++N+ GF IA D+ R G ++G Sbjct: 883 RIGRGKVRGYAYLTVASHKKMTSHSLRRLEIIQNSCALGSGFTIASHDMDLRGFGNLIGE 942 Query: 637 KQSGMPKFLIAQPELHDSLLE 657 +QSG K + EL+ +LE Sbjct: 943 EQSGQIKEV--GTELYQEMLE 961 >gi|300691385|ref|YP_003752380.1| transcription-repair ATP-dependent coupling factor, helicase [Ralstonia solanacearum PSI07] gi|299078445|emb|CBJ51097.1| transcription-repair ATP-dependent coupling factor, helicase [Ralstonia solanacearum PSI07] Length = 1143 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 145/415 (34%), Positives = 218/415 (52%), Gaps = 23/415 (5%) Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 A ++ L R+ ++ P+ + + F T Q +AI ++ DM+ M Sbjct: 566 AAELLNLYARRALRQGFAFPLTPNDY--EAFAESFGFDETPDQAAAIAAVIADMTSGKPM 623 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R++ GDVG GKT VAL A AV G Q ++AP +LA+QHY+ + + + + Sbjct: 624 DRLVCGDVGFGKTEVALRAAFVAVMGGKQVAMLAPTTLLAEQHYQTLADRFADWPVRIAE 683 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 I+ + A+E I G I+IGTH L +++ +L LVI+DE+HRFGV+Q+ L Sbjct: 684 ISRFKNKKEIDAAVEAINAGTIDIVIGTHKLLSPDVKFDRLGLVIIDEEHRFGVRQKEAL 743 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 VL +TATPIPRTL + G D S I P R IKT + R ++ + R Sbjct: 744 KTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFV---RREEDGVLR 800 Query: 475 LKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530 ++ L G + Y++ ++E E K + ++V + +A+ HG+M + + Sbjct: 801 EAILRELKRGGQVYFLHNEVETIENKRAKLEALVPE---------ARVAVAHGQMHEREL 851 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 E VM F +L+ TT+IE GIDV A+ I+I ++ FGLAQLHQLRGRVGR + Sbjct: 852 ERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRSDKFGLAQLHQLRGRVGRSHHQA 911 Query: 591 SCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 LL H L+K + RL ++ E+ GF +A DL+ R GE+LG KQSG Sbjct: 912 YAYLLVHDADGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDKQSG 966 >gi|58038544|ref|YP_190508.1| transcription-repair coupling factor [Gluconobacter oxydans 621H] gi|58000958|gb|AAW59852.1| Transcription-repair coupling factor [Gluconobacter oxydans 621H] Length = 1173 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 136/411 (33%), Positives = 220/411 (53%), Gaps = 20/411 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T+ Q AI D+L+DMS M R++ GDVG GKT VAL A A +G Q ++ P Sbjct: 615 PFVETEDQSRAIADVLEDMSAGRPMDRLVCGDVGFGKTEVALRAAFVAALSGMQVAVVVP 674 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QH+ + + V ++ + K E +A G I++GTHAL + Sbjct: 675 TTLLARQHFRSFSARFEGFPVNVAQLSRLITPKEATKVREGMADGTVDIVVGTHALLAKT 734 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + +L L+I+DE+ FGV + +L HVL ++ATP+PRTL L+ G ++S I Sbjct: 735 VSFERLGLLIIDEEQHFGVAHKERLKALREDVHVLTLSATPLPRTLQLSLSGVREMSLIA 794 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R ++T I P + I E I+R + G + + + P++ ++ + ER Sbjct: 795 TPPTDRLAVRTFITPFDSVMIREAIQRERF---RGGQIFCVVPRL-----ADMDRMAERL 846 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + + A HGR++ + E VM F +G +L++T ++E G+D+ + III Sbjct: 847 TEIVPDAKTVQA--HGRLTPTELERVMTEFADGKYDILLSTNIVESGLDMPSVNTIIIHR 904 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAE 622 A+ FGL QL+QLRGRVGRG++ + + PLS +S RL V++ + GF +A Sbjct: 905 ADMFGLGQLYQLRGRVGRGKQRGYAYMTWPQTRPLSPSSEKRLEVMQTLDSLGAGFTLAS 964 Query: 623 EDLKQRKEGEILGIKQSGMPKFL---IAQPELHDSLLEIARKDAKHILTQD 670 DL R G +LG +QSG K + + Q L D+++++ R+ + +D Sbjct: 965 HDLDLRGAGNLLGDEQSGHIKEVGIELYQQMLEDAVIDMRRERGERQDDED 1015 >gi|124025758|ref|YP_001014874.1| transcriptional-repair coupling factor [Prochlorococcus marinus str. NATL1A] gi|123960826|gb|ABM75609.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str. NATL1A] Length = 1167 Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 137/435 (31%), Positives = 235/435 (54%), Gaps = 20/435 (4%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 I L+ + + KE G +G ++ + P++ T Q +A + DM + M R+ Sbjct: 586 IDLIKLYAERSKEKGYKFPCDGPWQSELEDSFPYALTPDQATATSQVKSDMESEKPMDRL 645 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 + GDVG GKT VA+ A+ A+ +G Q ++AP +L+QQH+ I I V ++ Sbjct: 646 VCGDVGFGKTEVAIRAIFKAITSGKQIALLAPTTVLSQQHWRTISDRFAPYPIKVSLLNR 705 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 + ++ + + GQ ++GTH L + Y L L+++DE+ RFGV Q+ K+ + Sbjct: 706 FKTNSEKKHIVSGLKAGQIDAVVGTHQLLNKKLVYKDLGLLVIDEEQRFGVNQKEKIKEL 765 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LK 476 + VL ++ATPIPRTL ++ G ++S IT P R+PIKT + P++ +E+I + Sbjct: 766 KKSVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPIKTHLAPLD--NEIIRSAIS 823 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 + G + ++I P+I+ V E+ + + + I HG+M + E+ M + Sbjct: 824 QEIDRGGQIFYIVPRIK-----GIEDVAEKLKIMIPNV--KLLIAHGQMEEGALENAMLA 876 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F G +L+ TT++E G+D+ + I+IE++ FGL+QL+QLRGRVGR + + L+ Sbjct: 877 FNAGEADILLCTTIVESGLDIPRVNTILIEDSHKFGLSQLYQLRGRVGRS-GVQAHAWLF 935 Query: 597 HPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK---FLIA 647 +P L++ S RL +K D G+ +A D++ R G ILGI+QSG + F + Sbjct: 936 YPSDEKLNETSRQRLKAIKEFSDLGSGYQLAMRDMEIRGVGNILGIEQSGQMETIGFDLY 995 Query: 648 QPELHDSLLEIARKD 662 L +++ EI +D Sbjct: 996 MELLQETIAEIQGQD 1010 >gi|295397825|ref|ZP_06807889.1| transcription-repair coupling factor [Aerococcus viridans ATCC 11563] gi|294973922|gb|EFG49685.1| transcription-repair coupling factor [Aerococcus viridans ATCC 11563] Length = 1233 Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 138/380 (36%), Positives = 210/380 (55%), Gaps = 21/380 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P++ T Q +I +I +DM + M R+L GDVG GKT VA+ A+ A+ G Q + P Sbjct: 621 PYTETDDQVRSIAEIKKDMEVEKPMDRLLVGDVGFGKTEVAMRAVFKALMEGKQVAFLVP 680 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHYE + + + +++ +A + + + + GQ I+IGTH + Sbjct: 681 TTVLAQQHYETFTERFADWPFEIGLLSRFRSKAQQNETIAGLKKGQVDIVIGTHRILSKD 740 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +++ L L++VDE+ RFGV+ + KL VL +TATPIPRTL ++ LG D+S I Sbjct: 741 VEFLDLGLLVVDEEQRFGVKAKEKLKALKANVDVLTLTATPIPRTLNMSMLGVRDLSVIE 800 Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWI--CPQIEEKKESNFRSVVE 505 PA R P++T ++ N + + IER + +G+ Y QIEEK V E Sbjct: 801 TPPANRYPVQTFVMEQNYGAVKDAIER--EIARDGQVFYLFNNVAQIEEKAAFINELVPE 858 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + +AI HG+M+ + E+VM F G +L+ TT+IE G+D+ +A+ +++ Sbjct: 859 ----------ARVAIAHGQMTVVQLENVMMDFVLGEFDVLVTTTIIETGVDIPNANTLLV 908 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620 E A+ GL+ L+QLRGRVGR I+ +Y P LS+ S RL L++ TE GF I Sbjct: 909 EGADRMGLSTLYQLRGRVGRSTRIAYAYFMYRPDKMLSEVSEKRLMALRDFTELGSGFKI 968 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL R G +LG +Q G Sbjct: 969 AMRDLSIRGAGNLLGKQQHG 988 >gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter asiaticus str. psy62] gi|254040624|gb|ACT57420.1| transcription-repair coupling factor [Candidatus Liberibacter asiaticus str. psy62] Length = 1187 Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 137/395 (34%), Positives = 214/395 (54%), Gaps = 19/395 (4%) Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313 P+ V + + ++ P T+ QE AI ++QD+S M R++ GDVG GKT +AL A Sbjct: 607 PLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRA 666 Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373 AV G Q ++AP +L +QH+ + Q + + I+ + + I Sbjct: 667 AFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITE 726 Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433 GQ I+IGTHAL I + L L+I+DE+ FGV+ + L + T HVL ++ATPIPR Sbjct: 727 GQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHVLTLSATPIPR 786 Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493 TL L G ++S I+ P R +T I + + V E L G +++++CP++ Sbjct: 787 TLQLAITGVRELSLISMPPINRIACRTSISIFDPL-VVRETLMREYYRGGQSFYVCPRLS 845 Query: 494 --EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551 EK + +S V IA+ HG+MS + E M++F G +L++T+++ Sbjct: 846 DLEKCYTFLQSEVPELK---------IAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIV 896 Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRL 608 E G+D+ A+ +I++ A+ FGLAQL+QLRGRVGR +I+S L P PL+ + RL Sbjct: 897 ESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRS-KIASFALFLLPENRPLTAAAQKRL 955 Query: 609 SVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 +L++ GF +A DL R G +LG +QSG Sbjct: 956 RILQSLNTLGAGFQLASYDLDIRGTGNLLGEEQSG 990 >gi|253681221|ref|ZP_04862019.1| transcription-repair coupling factor [Clostridium botulinum D str. 1873] gi|253562459|gb|EES91910.1| transcription-repair coupling factor [Clostridium botulinum D str. 1873] Length = 1169 Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 146/430 (33%), Positives = 224/430 (52%), Gaps = 21/430 (4%) Query: 219 EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EW + + + A +E+ + L +R K G N + ++ P+ T Q Sbjct: 573 EWIKAKTKVKKAINEIAEELVKLYAIRSTLK---GHKFNKDTIWQKQFEEEFPYDETPDQ 629 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 +AI++I DM M R+L GDVG GKT VA+ A AV G Q + P ILA+QH Sbjct: 630 LTAIQEIKSDMESGKAMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFLVPTTILAEQH 689 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y + + + + +E+I+ A + L + G I+IGTH + Q +++ L L Sbjct: 690 YTNLIQRFCDFPVNIEMISRFKTSAQVKSILNEVRVGNVDILIGTHRILQKDVEFKDLGL 749 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +IVDE+ RFGV + K+ VL +TATPIPRTL ++ G DIS I P R P Sbjct: 750 LIVDEEQRFGVTHKEKIKNLKKNVDVLTLTATPIPRTLHMSLTGIRDISVIETPPEERYP 809 Query: 458 IKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-T 515 ++T ++ N D++IE + L + Y++ ++ S+ E L + F Sbjct: 810 VQTYVVEFN--DQLIEDAISRELDRDGQVYFVYNRV--------GSIKEMAAYLAKMFPN 859 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 S I I HG+M + + E VM F +L+ TT+IE G+D+ +A+ +II +A+ FGL+Q Sbjct: 860 SKIGIAHGQMPERELEKVMYDFMRKEYDILVCTTIIETGLDIQNANTMIIYDADRFGLSQ 919 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGRVGR ++ L Y L++ + RL +K+ TE GF IA DL+ R Sbjct: 920 LYQLRGRVGRSNRMAYAYLTYKKDKVLTEVAEKRLKAIKDFTELGSGFKIAMRDLEIRGA 979 Query: 631 GEILGIKQSG 640 G ++G Q G Sbjct: 980 GNLIGAAQHG 989 >gi|294808313|ref|ZP_06767070.1| transcription-repair coupling factor [Bacteroides xylanisolvens SD CC 1b] gi|294444475|gb|EFG13185.1| transcription-repair coupling factor [Bacteroides xylanisolvens SD CC 1b] Length = 1161 Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 138/409 (33%), Positives = 217/409 (53%), Gaps = 17/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + Q ++E G + + + +++ + + T Q A D+ DM M R++ Sbjct: 563 LIKLYSQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSKATIDVKADMESDRPMDRLVC 622 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LA QH++ ++ + VE ++ Sbjct: 623 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRERLKGLPCRVEYLSRAR 682 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A + L+ + G I+IGTH + +Q+ L L+IVDE+ +FGV + KL Q Sbjct: 683 TAAQTKAVLKGLKDGDVGILIGTHRILGKDVQFKDLGLLIVDEEQKFGVSVKEKLRQLKV 742 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478 L MTATPIPRTL + +G D+S I+ P R PI+T + N +EVI + + Sbjct: 743 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFN--EEVITDAINFE 800 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537 +S + +++ +I E ++++ER H +AI HG+M + E ++ F Sbjct: 801 MSRNGQVFFVNNRIANLPE--LKAMIER------HIPDCRVAIGHGQMEPTELEKIILDF 852 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 N +L+ATT+IE GID+ +A+ III A++FGL+ LHQ+RGRVGR + + C LL Sbjct: 853 VNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAP 912 Query: 598 P--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 P L+ RL ++N D G IA +DL R G +LG +QSG Sbjct: 913 PLGSLTAEGRRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGF 961 >gi|329925538|ref|ZP_08280412.1| transcription-repair coupling factor [Paenibacillus sp. HGF5] gi|328939821|gb|EGG36161.1| transcription-repair coupling factor [Paenibacillus sp. HGF5] Length = 1175 Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 132/378 (34%), Positives = 211/378 (55%), Gaps = 17/378 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q AI +I +DM Q M R+L GDVG GKT VA+ A A G Q ++ P Sbjct: 610 PYDETPDQLRAITEIKKDMEQNRPMDRLLCGDVGYGKTEVAVRAAFKAAIEGKQVAVLVP 669 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHYE ++ N I +++++ + + + ++++ G I+IGTH L Sbjct: 670 TTILAQQHYETFRERFANYPINIQVLSRFRSRKEQNETIKKVKQGSVDILIGTHRLLSQD 729 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I + L L+IVDE+ RFGV + KL + T VL +TATPIPRTL ++ LG D+S I Sbjct: 730 IVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIE 789 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R P++T ++ ++ + E IER L+ G + Y++ +++ + + + Sbjct: 790 TPPENRFPVQTYVVEHSQTLVREAIER---ELARGGQVYYLYNRVQ-----GIQEMAAQI 841 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + L + + + HG+MS+ + E + F +G +L++T++IE G+D+ + + +I+ + Sbjct: 842 SMLVPE--ARVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHD 899 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622 A+ GL+QL+QLRGRVGR I+ Y L++ + RL +K TE GF IA Sbjct: 900 ADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAM 959 Query: 623 EDLKQRKEGEILGIKQSG 640 DL R G +LG +Q G Sbjct: 960 RDLSIRGAGNLLGAEQHG 977 >gi|262407555|ref|ZP_06084103.1| transcription-repair coupling factor [Bacteroides sp. 2_1_22] gi|262354363|gb|EEZ03455.1| transcription-repair coupling factor [Bacteroides sp. 2_1_22] Length = 1124 Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 138/409 (33%), Positives = 217/409 (53%), Gaps = 17/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + Q ++E G + + + +++ + + T Q A D+ DM M R++ Sbjct: 526 LIKLYSQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSKATIDVKADMESDRPMDRLVC 585 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LA QH++ ++ + VE ++ Sbjct: 586 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRERLKGLPCRVEYLSRAR 645 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A + L+ + G I+IGTH + +Q+ L L+IVDE+ +FGV + KL Q Sbjct: 646 TAAQTKAVLKGLKDGDVGILIGTHRILGKDVQFKDLGLLIVDEEQKFGVSVKEKLRQLKV 705 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478 L MTATPIPRTL + +G D+S I+ P R PI+T + N +EVI + + Sbjct: 706 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFN--EEVITDAINFE 763 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537 +S + +++ +I E ++++ER H +AI HG+M + E ++ F Sbjct: 764 MSRNGQVFFVNNRIANLPE--LKAMIER------HIPDCRVAIGHGQMEPTELEKIILDF 815 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 N +L+ATT+IE GID+ +A+ III A++FGL+ LHQ+RGRVGR + + C LL Sbjct: 816 VNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAP 875 Query: 598 P--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 P L+ RL ++N D G IA +DL R G +LG +QSG Sbjct: 876 PLGSLTAEGRRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGF 924 >gi|255691931|ref|ZP_05415606.1| transcription-repair coupling factor [Bacteroides finegoldii DSM 17565] gi|260622336|gb|EEX45207.1| transcription-repair coupling factor [Bacteroides finegoldii DSM 17565] Length = 1123 Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 140/410 (34%), Positives = 217/410 (52%), Gaps = 19/410 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + Q ++E G + + + +++ + + T Q A D+ DM M R++ Sbjct: 526 LIKLYSQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSKATIDVKADMESDRPMDRLVC 585 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LA QH++ + + VE ++ Sbjct: 586 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRDRLKGLPCRVEYLSRAR 645 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A + L+ + G +I+IGTH + +Q+ L L+IVDE+ +FGV + KL Q Sbjct: 646 TAAQSKAVLKGLKEGDVNILIGTHRILGKDVQFKDLGLLIVDEEQKFGVSVKEKLRQLKV 705 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478 L MTATPIPRTL + +G D+S I+ P R PI+T + N +EVI + + Sbjct: 706 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFN--EEVITDAINFE 763 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537 +S + +++ +I E ++++ER H +AI HG+M E ++ F Sbjct: 764 MSRNGQVFFVNNRIANLPE--LKAMIER------HIPDCRVAIGHGQMEPAQLEKIILDF 815 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 N +L+ATT+IE GID+ +A+ III A++FGL+ LHQ+RGRVGR + + C LL Sbjct: 816 VNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-A 874 Query: 598 PPLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 PPLS RL ++N D G IA +DL R G +LG +QSG Sbjct: 875 PPLSSLTAEGKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGF 924 >gi|153807964|ref|ZP_01960632.1| hypothetical protein BACCAC_02250 [Bacteroides caccae ATCC 43185] gi|149129573|gb|EDM20787.1| hypothetical protein BACCAC_02250 [Bacteroides caccae ATCC 43185] Length = 1141 Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 139/410 (33%), Positives = 218/410 (53%), Gaps = 19/410 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + Q ++E G + + + +++ + + T Q A D+ DM M R++ Sbjct: 544 LIKLYSQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSKATVDVKTDMESDRPMDRLVC 603 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LA QH++ ++ + VE ++ Sbjct: 604 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRERLKGLPCRVEYLSRAR 663 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A + L+ + G I+IGTH + +++ L L+IVDE+ +FGV + KL Q Sbjct: 664 TAAQAKAVLKELKEGDVGILIGTHRILGKDVRFKDLGLLIVDEEQKFGVSVKEKLRQLKV 723 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478 L MTATPIPRTL + +G D+S I+ P R PI+T + N +EVI + + Sbjct: 724 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFN--EEVITDAINFE 781 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537 +S + +++ +I E ++++ER H +AI HG+M + E ++ F Sbjct: 782 MSRNGQVFFVNNRIANLPE--LKAMIER------HIPDCRVAIGHGQMEPAELEKIIFDF 833 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 N +L+ATT+IE GID+ +A+ III A++FGL+ LHQ+RGRVGR + + C LL Sbjct: 834 VNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-A 892 Query: 598 PPLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 PPLS RL ++N D G IA +DL R G +LG +QSG Sbjct: 893 PPLSSLTAEGRRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGF 942 >gi|297545520|ref|YP_003677822.1| transcription-repair coupling factor [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843295|gb|ADH61811.1| transcription-repair coupling factor [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 1163 Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 169/542 (31%), Positives = 269/542 (49%), Gaps = 45/542 (8%) Query: 116 VFFEGRKITVTGKIK---KLKNRIIMVHPHYIFHNSQDVNFPL--IEAVYSLPTGLSVDL 170 +F + RK T KIK K+K+ + Y+ H VN+ + E + + + Sbjct: 476 IFGQTRKSKKTVKIKNADKIKSFTELEVGSYVVH----VNYGIGKYEGIEKIKVDGIIRD 531 Query: 171 FKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF---EWTSPARER 227 + KII L V E + DL+QK P+ NP K EW R+ Sbjct: 532 YLKIIYAGGDTLFVPVEQL--DLVQKYVGPT--------DNPPKLNKLGGSEWLKAKRKA 581 Query: 228 LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287 E LA + L ++Q K G + + ++ P+ T+ Q IK+I +D Sbjct: 582 KKAVEDLAKDLLQLYAKRQIAK--GHAFSPDTPWQREFEEQFPYEETEDQLRCIKEIKED 639 Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347 M + M R+L GDVG GKT VAL A AV G Q + P ILA QHY + + Sbjct: 640 MEKDKPMDRLLCGDVGYGKTEVALRAAFKAVADGKQVAFLCPTTILAYQHYTNFMERFKE 699 Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407 + +E+++ + + ++ +A G II+GTH L Q+ +++ L L+I+DE+ RFG Sbjct: 700 FPVKIEMLSRFRTPKEQAQIIKGLAEGTIDIIVGTHRLLQNDVKFKDLGLLIIDEEQRFG 759 Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467 V + K+ + VL ++ATPIPRTL ++ +G D+S + P R P++T ++ N Sbjct: 760 VVHKEKIKKLKENIDVLTLSATPIPRTLHMSLIGIRDMSVLENPPEDRFPVETYVVEFNE 819 Query: 468 --IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHG 523 I + I R + G + Y++ ++ + +E+ SL + +A+ HG Sbjct: 820 ELIKDAILR---EIGRGGQVYFVYNRV---------NGIEKMASLVKDLVPGCRVAVAHG 867 Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583 +M + E VM F NG +L++TT+IE G+D+ + + II+ +A+ GL+QL+QLRGRV Sbjct: 868 QMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDADKLGLSQLYQLRGRV 927 Query: 584 GRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQ 638 GR ++ Y LS+ + RL +K TE GF IA DL+ R G +LG +Q Sbjct: 928 GRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEFTEFGSGFKIAMRDLEIRGAGNLLGAEQ 987 Query: 639 SG 640 G Sbjct: 988 HG 989 >gi|256419455|ref|YP_003120108.1| transcription-repair coupling factor [Chitinophaga pinensis DSM 2588] gi|256034363|gb|ACU57907.1| transcription-repair coupling factor [Chitinophaga pinensis DSM 2588] Length = 1126 Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 134/400 (33%), Positives = 211/400 (52%), Gaps = 15/400 (3%) Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 K + G P + + + ++ + + T Q A D+ +DM M R++ GDVG GKT Sbjct: 542 KAQTGFPHSPDTYLQTELEASFLYEDTPDQSKATADVKRDMQSPAPMDRLVCGDVGFGKT 601 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +A+ A ++ G QA ++ P ILA QHY+ ++ V+ + +++ Sbjct: 602 EIAVRAAFKSIVDGKQAAVLVPTTILAFQHYKTFSDRLKDFPCTVDYLNRFKSAKEKKET 661 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 L+R+A G+ IIIGTHAL +++ L +++VDE+ +FGV + KL Q L +T Sbjct: 662 LQRLAEGKIDIIIGTHALLSKDVKFKDLGVMVVDEEQKFGVAAKEKLKQLKINVDTLTLT 721 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL + +G D+S I P R+PI+T + + D + + + G + Y+ Sbjct: 722 ATPIPRTLQFSLMGARDLSVINTPPPNRQPIETEVHVFDH-DLIRDAIYYETERGGQVYF 780 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 + ++ K S+++ SIA HG+M E V+ F + +L+ Sbjct: 781 VYNRV--KGLGEMSSLIKGLCP-----DLSIATAHGQMEGHQLEEVILDFIDRKYDVLVC 833 Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK---NS 604 T ++E G+D+ +A+ III NA HFGL+ LHQLRGRVGR + + C LL PP+S +S Sbjct: 834 TNIVESGVDIPNANTIIINNAHHFGLSDLHQLRGRVGRSNKKAFCYLL-APPISTLPGDS 892 Query: 605 YTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 RL L+ + GF IA DL R G +LG +QSG Sbjct: 893 RKRLQTLEQHSELGSGFQIAMRDLDIRGAGNLLGGEQSGF 932 >gi|3511015|gb|AAD03810.1| transcription-repair coupling factor [Lactobacillus sakei] Length = 1045 Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 144/429 (33%), Positives = 223/429 (51%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW + A E +A + L +++ +K P + ++ + T Q Sbjct: 569 EWQKTKSKVSAKIEDIADDLIELYAQREAEKGYAFPKD--DQLQADFENQFAYPETDDQL 626 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM + M R+L GDVG GKT VAL A AV AG Q + P ILAQQHY Sbjct: 627 RSTAEIKHDMEKVRPMDRLLVGDVGFGKTEVALRAAFKAVAAGKQVAFLVPTTILAQQHY 686 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + + + + +++ + L+ + GQ I+IGTH L + + L L+ Sbjct: 687 ENMLARFADFPVELGLLSRFKTRKEVTATLKGLEKGQVDIVIGTHRLLSKDVVFKDLGLL 746 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + +L Q VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 747 IVDEEQRFGVKHKERLKQLKAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPTNRYPI 806 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T ++ N + E IER L + +++ ++ S+ V+ +L T Sbjct: 807 QTYVMEQNAGAMREAIER---ELERNGQVFYLHNRV-----SDIEQTVDEIQALVPEATV 858 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 A HG+M++ E V+ F G +L+ TT+IE G+D+ + + +I+E+A+H+GL+QL Sbjct: 859 GYA--HGQMTEAQLEGVIYDFVQGKYDVLVTTTIIETGVDMPNVNTMIVEDADHYGLSQL 916 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGR+GR ++ +Y P L++ S RL +K+ TE GF IA DL R G Sbjct: 917 YQLRGRIGRSSRVAYGYFMYKPDKVLTEVSEKRLQAIKDFTELGSGFKIAMRDLSIRGAG 976 Query: 632 EILGIKQSG 640 +LG +Q G Sbjct: 977 NLLGKQQHG 985 >gi|300312329|ref|YP_003776421.1| transcription-repair ATP-dependent coupling factor [Herbaspirillum seropedicae SmR1] gi|300075114|gb|ADJ64513.1| transcription-repair ATP-dependent coupling factor (helicase superfamily II) protein [Herbaspirillum seropedicae SmR1] Length = 1145 Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 141/375 (37%), Positives = 201/375 (53%), Gaps = 13/375 (3%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q +AI +++DM+ M R++ GDVG GKT VAL A AV G Q I+AP Sbjct: 601 FEETADQAAAINAVIKDMTGGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQVAILAPT 660 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA+QH N + + ++ +A++ + G I+IGTH L D + Sbjct: 661 TLLAEQHAATFADRFANWPVKIAELSRFRTGKEVTQAIKGLGDGTIDIVIGTHKLLSDEV 720 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G D S I Sbjct: 721 KFSRLGLVIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIAT 780 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P R IKT + + + E L G + Y++ ++E +N ++ +E+ L Sbjct: 781 APQKRLAIKT-FVRAEQESTIREACLRELKRGGQVYFLHNEVETI--ANRKAALEQL--L 835 Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 E + I + HG+M + D E VM F +L+ TT+IE GIDV A+ II+ A+ Sbjct: 836 PE---ARIGVAHGQMHERDLEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADK 892 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625 FGLAQLHQLRGRVGR + LL LSK + RL ++ E+ GF +A DL Sbjct: 893 FGLAQLHQLRGRVGRSHHQAYAYLLVQDVQGLSKQAQRRLEAIQQMEELGSGFYLAMHDL 952 Query: 626 KQRKEGEILGIKQSG 640 + R GE+LG QSG Sbjct: 953 EIRGAGEVLGDHQSG 967 >gi|254486916|ref|ZP_05100121.1| transcription-repair coupling factor [Roseobacter sp. GAI101] gi|214043785|gb|EEB84423.1| transcription-repair coupling factor [Roseobacter sp. GAI101] Length = 1174 Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 140/413 (33%), Positives = 228/413 (55%), Gaps = 24/413 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P++ T Q SAI D++ D++ N M R++ GDVG GKT VA+ A A +G Q ++AP Sbjct: 614 PYTETDDQMSAINDVIDDLTSGNPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAVIAP 673 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHY+ + + + V ++ + E +A G ++IGTHAL + Sbjct: 674 TTLLARQHYKSFAERFRGFPLEVRQLSRFVSTKDASATREGMAKGTVDVVIGTHALLAKN 733 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ L L+I+DE+ FGV + +L T HVL +TATPIPRTL L+ G D+S I Sbjct: 734 IKFNNLGLLIIDEEQHFGVGHKERLKAMRTDIHVLTLTATPIPRTLQLSLTGVRDLSIIG 793 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R I+T ++ D V R + +L E G +++++ P+I + E +E Sbjct: 794 TPPVDRLAIRTY---VSEFDTVTLR-EALLREHYRGGQSFYVVPRISDLAE------IEA 843 Query: 507 F-NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 F + T +A HG+M+ + + M++F +G +L+ATT++E G+D+ A+ +I+ Sbjct: 844 FLKAQLPELTYLVA--HGQMAAGELDDRMNAFYDGKYDILLATTIVESGLDIPTANTMIV 901 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 A+ FGLAQL+Q+RGRVGR + + L P L+ + RL VL + + GF + Sbjct: 902 HRADMFGLAQLYQIRGRVGRSKTRAYAYLTTKPRAKLTATAEKRLRVLGSLDTLGAGFTL 961 Query: 621 AEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQD 670 A +DL R G +LG +QSG + F + Q L D++ +I + + ++ D Sbjct: 962 ASQDLDIRGAGNLLGEEQSGQMRDVGFELYQSMLEDAIAKIRAGELEGVIDDD 1014 >gi|313888106|ref|ZP_07821780.1| transcription-repair coupling factor [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845796|gb|EFR33183.1| transcription-repair coupling factor [Peptoniphilus harei ACS-146-V-Sch2b] Length = 1159 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 144/433 (33%), Positives = 227/433 (52%), Gaps = 17/433 (3%) Query: 214 KAKDFEWTSP-ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272 K +W AR R + D++ I L R+ K G + + + ++ + Sbjct: 559 KLNSLDWKKKKARARQSIDDMAEDLIKLYATRENTK---GFAFSEDSQYQREFEDAFIYE 615 Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332 T Q + ++I +DM + + M R+L DVG GKT VAL A A+ G Q I+ P I Sbjct: 616 ETPGQLKSAEEIKEDMEKASPMDRLLCADVGYGKTEVALRAAFKAILDGKQVAILVPTTI 675 Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392 LAQQHY IK+ +N + V +++ + ++ LE + G II+GTH L +++ Sbjct: 676 LAQQHYNTIKERFKNFPVGVGLLSRFRSKKDQKMDLEGLKDGNIDIIVGTHRLLSKDVKF 735 Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452 L L+I+DE+ RFGV+ + KL L +TATPIPRTL ++ +G D+S I E P Sbjct: 736 KDLGLLIIDEEQRFGVRHKEKLRMLKENVDTLTLTATPIPRTLQMSMIGIRDMSVIEEPP 795 Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512 R P++T ++ N + V E + + G + Y++ ++ SN + + L Sbjct: 796 EERFPVETYVLEYNNL-MVREAILKEIERGGQVYFLYNKV-----SNMENKLLELRKLVP 849 Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 T S+A +G+M++ E M F G +L+ +T+IE G+DV +A+ +II ++ G Sbjct: 850 EATFSMA--NGQMTEKALEDTMIDFIEGNVDVLVCSTIIETGMDVPNANTMIITDSNRLG 907 Query: 573 LAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQ 627 L+QL+QLRGR+GR I+ Y +S+ + RL +K TE G IAE DL+ Sbjct: 908 LSQLYQLRGRIGRSSRIAYAYFTYDRSTSISEVAQKRLQAIKEFTEFGSGHKIAERDLEI 967 Query: 628 RKEGEILGIKQSG 640 R G ILG +QSG Sbjct: 968 RGSGSILGSRQSG 980 >gi|71275507|ref|ZP_00651793.1| Transcription-repair coupling factor [Xylella fastidiosa Dixon] gi|71900755|ref|ZP_00682876.1| Transcription-repair coupling factor [Xylella fastidiosa Ann-1] gi|170729284|ref|YP_001774717.1| transcription-repair coupling factor [Xylella fastidiosa M12] gi|71163807|gb|EAO13523.1| Transcription-repair coupling factor [Xylella fastidiosa Dixon] gi|71729485|gb|EAO31595.1| Transcription-repair coupling factor [Xylella fastidiosa Ann-1] gi|167964077|gb|ACA11087.1| transcription-repair coupling factor [Xylella fastidiosa M12] Length = 1193 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 141/431 (32%), Positives = 229/431 (53%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W+ R+ +A ++ + R+Q + G+ + ++ + + PF T Q Sbjct: 597 QWSKAKRKAAEKVRDVAAELLEIQARRQARA--GLALRIDRTMYEPFAAGFPFEETPDQL 654 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI+ L+D+ M R++ GDVG GKT VA+ A AA AG Q ++ P +LA+QHY Sbjct: 655 AAIETTLRDLQSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVLVPTTLLAEQHY 714 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + I VE+++ + L++++ G +I+GTH L Q +++ L LV Sbjct: 715 RNFRDRFADYPIRVEVLSRFKSTKEIKAELQKVSEGTMDVIVGTHRLLQPDVKFKDLGLV 774 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+Q+ L H+L +TATPIPRTL + G D+S I P R + Sbjct: 775 IVDEEQRFGVRQKEALKSLRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPLNRLAV 834 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVERFNSLHEHF 514 +T I P + + E +R L+ G + Y++ +E + + + +V Sbjct: 835 QTFITPWDNALLHEAFQR---ELARGGQLYFLHNDVESIGRMQRDLAQLVPE-------- 883 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + I I HG+M + + E VM F+ +L++TT+IE GID+ +A+ III A+ FGLA Sbjct: 884 -ARIGIAHGQMPERELERVMLDFQKQHFNVLLSTTIIESGIDIPNANTIIINRADRFGLA 942 Query: 575 QLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629 QLHQLRGRVGR + L+ ++ ++ RL + + ++ GF +A DL+ R Sbjct: 943 QLHQLRGRVGRSHHRAYAYLVVPDRRSMTADAEKRLEAIASMDELGAGFTLATHDLEIRG 1002 Query: 630 EGEILGIKQSG 640 GE+LG QSG Sbjct: 1003 AGELLGEDQSG 1013 >gi|256822363|ref|YP_003146326.1| transcription-repair coupling factor [Kangiella koreensis DSM 16069] gi|256795902|gb|ACV26558.1| transcription-repair coupling factor [Kangiella koreensis DSM 16069] Length = 1140 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 140/414 (33%), Positives = 226/414 (54%), Gaps = 19/414 (4%) Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 +A ++ + R+ K+ GI ++ ++ F T Q ++I +++DM+ Sbjct: 561 VAAELLDIYARRAAKE--GIQYQLDETEYRRFCAEFAFEETVDQTTSINAVIRDMTSHLP 618 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R++ GDVG GKT VAL A A ++G Q ++ P +LAQQH+E + + V Sbjct: 619 MDRLVCGDVGFGKTEVALRAAFIAAQSGKQVAVLVPTTLLAQQHFETFSDRFADWPMKVA 678 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 ++ + L+ + G I++GTH L Q +++ +L L+I+DE+HRFGV+Q+ + Sbjct: 679 SLSRFATSKEVQATLKGLEDGTVDIVVGTHKLIQQDVKFKRLGLLIIDEEHRFGVRQKEQ 738 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEV 471 L + T +L +TATPIPRTL ++ G D+S I PA R +KT + ++ I E Sbjct: 739 LKKFRTEVDILTLTATPIPRTLNMSMSGMRDLSIIATPPARRLSVKTFVREYHKPLIREA 798 Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531 I L+ VL G + Y++ ++ + VE L + I + HG+M + + E Sbjct: 799 I--LREVL-RGGQVYFLHNAVD-----TIQRTVEELQELLPE--ARIQLAHGQMRERELE 848 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 VM F + +L+ TT++E GID +A+ +II+ A+ FGLAQLHQLRGRVGR + Sbjct: 849 QVMRDFYHQRFNVLVCTTIVETGIDNPNANTMIIDRADKFGLAQLHQLRGRVGRSHHQAY 908 Query: 592 CILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 LL ++K++ RL + + ED GF +A DL+ R GE+LG +QSG Sbjct: 909 AYLLTPAGRKITKDAEKRLDAIASLEDLGAGFTLATHDLEIRGAGELLGDEQSG 962 >gi|163731753|ref|ZP_02139200.1| transcription-repair coupling factor [Roseobacter litoralis Och 149] gi|161395207|gb|EDQ19529.1| transcription-repair coupling factor [Roseobacter litoralis Och 149] Length = 1154 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 141/403 (34%), Positives = 225/403 (55%), Gaps = 31/403 (7%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P++ T Q AI+D++ DM+ N M R++ GDVG GKT VA+ A A +G Q ++AP Sbjct: 594 PYTETDDQLRAIEDVIDDMTSGNPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVALIAP 653 Query: 330 IGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +LA+QHY E + + N + + ++ A R + ++ G I+IGTHAL Sbjct: 654 TTLLARQHYKSFAERFRGFPINVRQLSRFVSTKDANATR----DGMSRGTVDIVIGTHAL 709 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445 I++ L L+++DE+ FGV + +L Q T HVL +TATPIPRTL L+ G D+ Sbjct: 710 LAQGIRFQNLGLLVIDEEQHFGVTHKERLKQLRTDIHVLTLTATPIPRTLQLSLTGVRDL 769 Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRS 502 S I P R I+T ++ D V R + +L E G +++++ P+I + E Sbjct: 770 SIIGTPPVDRLAIRTY---VSEFDTVTLR-EALLREHYRGGQSFYVVPRISDLPE----- 820 Query: 503 VVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 +E F L E + + HG+M+ + + M++F +G +L+ATT++E G+D+ A+ Sbjct: 821 -IEAF--LTEQLPELTYVVAHGQMAAGELDDRMNAFYDGKFDILLATTIVESGLDIPTAN 877 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED--- 616 +++ A+ FGLAQL+Q+RGRVGR + + L P L+ + RL VL + + Sbjct: 878 TMVVHRADMFGLAQLYQIRGRVGRSKTRAYAYLTTKPRARLTATAEKRLRVLSSLDTLGA 937 Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 GF +A +DL R G +LG +QSG + + EL+ S+LE A Sbjct: 938 GFTLASQDLDIRGAGNLLGEEQSGQMRDV--GFELYQSMLEEA 978 >gi|254502678|ref|ZP_05114829.1| transcription-repair coupling factor [Labrenzia alexandrii DFL-11] gi|222438749|gb|EEE45428.1| transcription-repair coupling factor [Labrenzia alexandrii DFL-11] Length = 1161 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 133/382 (34%), Positives = 213/382 (55%), Gaps = 25/382 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +AI + +D+S M R++ GDVG GKT VAL A A +G Q ++ P Sbjct: 613 PYEETDDQLNAIDSVFEDLSSGRPMDRLVCGDVGFGKTEVALRAAFLAAMSGRQVAVVVP 672 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QH++ + I V + +P + + IA G I++GTHAL S Sbjct: 673 TTLLARQHFKTFSERFHGLPINVAHASRLVPTRQLTQTKKGIADGSVDIVVGTHALLGKS 732 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 IQ+ L L+I+DE+ FGV+ + +L + + HVL ++ATPIPRTL L G ++S I Sbjct: 733 IQFRDLGLLIIDEEQHFGVKHKERLKELKSDIHVLTLSATPIPRTLQLALTGVRELSLIA 792 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R ++T + P D ++ R + +L E G +++++CP++ + + ER Sbjct: 793 TPPVDRLAVRTFVSP---FDPLVVR-EALLREHYRGGQSFYVCPRLSD--------IAER 840 Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + L E +A+ HG+M + E VM++F G +L++TT++E G+D+ A+ +I+ Sbjct: 841 RDFLEEAVPELKVAVAHGQMPPGELEDVMNAFYEGKYNVLLSTTIVESGLDIPTANTLIV 900 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GF 618 A+ FGL+QL+QLRGRVGR + + L+ P L+ + RL VL++ E GF Sbjct: 901 HRADMFGLSQLYQLRGRVGRSK--TRAYALFTVPANKTLTPTAERRLKVLQSLETLGAGF 958 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 +A DL R G +LG +QSG Sbjct: 959 QLASHDLDIRGAGNLLGDEQSG 980 >gi|309790907|ref|ZP_07685449.1| transcription-repair coupling factor [Oscillochloris trichoides DG6] gi|308227021|gb|EFO80707.1| transcription-repair coupling factor [Oscillochloris trichoides DG6] Length = 1171 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 142/431 (32%), Positives = 228/431 (52%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W R+ A + LA + L ++Q K+ G N + + +++ + P+ T+ Q Sbjct: 561 DWERAKRKARAAVQDLAQDLLALYAQRQTKR--GHAFNPDNEWQRELEGSFPYIETEDQL 618 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + ++ DM M R++ GDVG GKT VAL A AV+ G Q ++ P +LAQQH+ Sbjct: 619 RVLAEVKTDMEHDVPMDRLICGDVGFGKTEVALRAAFKAVQDGKQVALLVPTTVLAQQHF 678 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E K+ + VE+++ + + + G+ IIIGTH L + + L LV Sbjct: 679 ETFKQRMAAFPVKVEMLSRFRSAKEQDVIMRELLLGRVDIIIGTHRLLSKDVIFKDLGLV 738 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + +L Q VL +TATPIPRTL + G D+S I P R P+ Sbjct: 739 IVDEEQRFGVRHKERLKQLRAEVDVLTLTATPIPRTLHMAMAGIRDLSVIDTPPEDRIPV 798 Query: 459 KTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEE--KKESNFRSVVERFNSLHEHF 514 KT + P DE + R ++ L + Y++ +++ ++ R++V N Sbjct: 799 KTYVTP---YDETLIREAILRELERNGQVYFVHNRVQSIYHVANHLRNLVPEAN------ 849 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 I + HG++++ + E VM F G +L+ TT+IE G+DV A+ +II++A +FGLA Sbjct: 850 ---IGVGHGQLNERELEQVMIDFFEGRHDVLVCTTIIESGLDVSSANTMIIDDATNFGLA 906 Query: 575 QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629 QL+QLRGRVGR + L Y +++ + RL ++ + GF +A DL+ R Sbjct: 907 QLYQLRGRVGRSANRAYAYLFYKGDRAMTEEAQQRLEAIQEATELGAGFRVAMRDLEIRG 966 Query: 630 EGEILGIKQSG 640 G +LG +QSG Sbjct: 967 AGNLLGAEQSG 977 >gi|293373528|ref|ZP_06619880.1| transcription-repair coupling factor [Bacteroides ovatus SD CMC 3f] gi|292631492|gb|EFF50118.1| transcription-repair coupling factor [Bacteroides ovatus SD CMC 3f] Length = 1119 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 138/409 (33%), Positives = 217/409 (53%), Gaps = 17/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + Q ++E G + + + +++ + + T Q A D+ DM M R++ Sbjct: 521 LIKLYSQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSKATIDVKADMESDRPMDRLVC 580 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LA QH++ ++ + VE ++ Sbjct: 581 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRERLKGLPCRVEYLSRAR 640 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A + L+ + G I+IGTH + +Q+ L L+IVDE+ +FGV + KL Q Sbjct: 641 TAAQTKAVLKGLKDGDVGILIGTHRILGKDVQFKDLGLLIVDEEQKFGVSVKEKLRQLKV 700 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478 L MTATPIPRTL + +G D+S I+ P R PI+T + N +EVI + + Sbjct: 701 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFN--EEVITDAINFE 758 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537 +S + +++ +I E ++++ER H +AI HG+M + E ++ F Sbjct: 759 MSRNGQVFFVNNRIANLPE--LKAMIER------HIPDCRVAIGHGQMEPTELEKIILDF 810 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 N +L+ATT+IE GID+ +A+ III A++FGL+ LHQ+RGRVGR + + C LL Sbjct: 811 VNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAP 870 Query: 598 P--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 P L+ RL ++N D G IA +DL R G +LG +QSG Sbjct: 871 PLGSLTAEGRRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGF 919 >gi|225378012|ref|ZP_03755233.1| hypothetical protein ROSEINA2194_03672 [Roseburia inulinivorans DSM 16841] gi|225210165|gb|EEG92519.1| hypothetical protein ROSEINA2194_03672 [Roseburia inulinivorans DSM 16841] Length = 504 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 150/461 (32%), Positives = 227/461 (49%), Gaps = 28/461 (6%) Query: 9 LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68 L + + +G+G K + KI N R DL+ Y P +++ E+ E Sbjct: 3 LNSSIKEVKGIGDKTAGLFLKI----NIETIR--DLISYFPRTYVQFPEIKHPDEVVEGE 56 Query: 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTG---EITLLFFYRKTEMLKNVFFEGRKITV 125 + G I Q +++ R +I + TG + L++F + +KN G Sbjct: 57 TAAVIGQIRQTPV--VKRVRSMQITVTSITGMGKRLELVWF--RLPYIKNSLHPGGTYVF 112 Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185 GK++ R +M P + L+ VY+LP GLS L K L + Sbjct: 113 YGKVQHKNGRFVMEQPAIYTPEKYEAMEHLLLPVYTLPKGLSNQLMLKAERSVLEEEHLF 172 Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245 +++ +L +K A IH P D E AR+RL +DEL L ++ Sbjct: 173 RDYLPTELREKHQLCEYNYAIKQIHFP---DDMETLIEARKRLVFDELF-----LFILNL 224 Query: 246 QFKKEIGIPINVE-----GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300 Q++KE + ++++ +P+ T +Q A+ ++ DM M R++QG Sbjct: 225 QYQKEKKEKEKNQFSFQSDDFVEQLIEKLPYKLTNAQLRALSEVRADMRSDYVMQRLIQG 284 Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGN 358 DVGSGKT++A +AMA G Q+ IMAP +LA+QHYE + + V +ITG+ Sbjct: 285 DVGSGKTIIAFLAMADTAHNGCQSAIMAPTEVLARQHYESFQSMCEIFGLDFPVILITGS 344 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 M ++ A + I +IIGTHAL Q+ + Y L LVI DEQHRFGV+QR ++K Sbjct: 345 MTAKQKKLAYQEILDHPDALIIGTHALIQEKVIYQNLALVITDEQHRFGVKQREIFSEKG 404 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 T PH+L+M+ATPIPRTL + GD+DIS + E PA R PIK Sbjct: 405 TKPHILVMSATPIPRTLAIILYGDLDISVVDEVPAKRLPIK 445 >gi|254440320|ref|ZP_05053814.1| transcription-repair coupling factor [Octadecabacter antarcticus 307] gi|198255766|gb|EDY80080.1| transcription-repair coupling factor [Octadecabacter antarcticus 307] Length = 1177 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 142/403 (35%), Positives = 224/403 (55%), Gaps = 21/403 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 ++ L P++ T Q SAI+D+L D+ M R++ GDVG GKT VA+ A A +G Sbjct: 616 EQFLARFPYAETDDQLSAIEDVLDDLGSGKPMDRLVCGDVGFGKTEVAIRAAFVAAMSGV 675 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+AP +LA+QHY+ + + I V ++ + + +A G I+IGT Sbjct: 676 QVAIVAPTTLLARQHYKGFAERFRGFPINVRTLSRFVSAKEAALTKDGMAKGTVDIVIGT 735 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 HAL SI++ L L+++DE+ FGVQ + +L Q T HVL +TATPIPRTL L+ G Sbjct: 736 HALLAKSIRFKDLGLLVIDEEQHFGVQHKERLKQMRTDIHVLTLTATPIPRTLQLSLSGV 795 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 ++S I P R I+T ++ D V R + +L E G +++++ P++ + E Sbjct: 796 RELSIIGTPPVDRLAIRTY---VSEFDTVTIR-EALLREHYRGGQSFFVVPRVSDLSE-- 849 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 +E F E S G+M+ + + M++F +G +L+ATT++E G+D+ Sbjct: 850 ----IEAFIR-DEIPEVSFVTASGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPT 904 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED- 616 A+ +I+ A+ FGLAQL+Q+RGRVGR + + L Y P L+ + RL VL + + Sbjct: 905 ANTMIVHRADMFGLAQLYQIRGRVGRSKARAYAYLTYKPRQKLTPQAEKRLRVLGSIDTL 964 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 GF +A +DL R G +LG +QSG + + EL+ S+LE Sbjct: 965 GAGFTLASQDLDIRGAGNLLGEEQSGQMREV--GYELYQSMLE 1005 >gi|298291681|ref|YP_003693620.1| transcription-repair coupling factor [Starkeya novella DSM 506] gi|296928192|gb|ADH89001.1| transcription-repair coupling factor [Starkeya novella DSM 506] Length = 1170 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 142/410 (34%), Positives = 225/410 (54%), Gaps = 27/410 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q++AI+ + D+ + M R++ GDVG GKT VAL A A G Q ++ P Sbjct: 617 PYEETEDQDAAIESVFDDLGSGHPMDRLVCGDVGFGKTEVALRAAFAVALDGKQVAVVVP 676 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QH++ + + ++V + + + + +A G I++GTHAL + Sbjct: 677 TTLLARQHFKTFSERFKGLPVVVRQASRLVSSKDMSETRKGLADGTVDIVVGTHALLGKT 736 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I + L LVIVDE+ FGV + KL Q HVL +TATPIPRTL L G ++S I Sbjct: 737 ISFKDLGLVIVDEEQHFGVAHKEKLKQLRADVHVLTLTATPIPRTLQLAMTGVRELSIIA 796 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKE-SNF--RSV 503 P R +++ + P D +I R + +L E G +++++CP+IE+ E +F R V Sbjct: 797 SPPVDRLAVRSFVTP---FDPLIVR-EALLRERYRGGQSFYVCPRIEDLAEVKDFLDRQV 852 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 E +A+ HG+M+ E +M +F +G +L++TT++E G+D+ A+ + Sbjct: 853 PE----------VKVAVAHGQMAATQLEEIMSAFYDGQFDVLLSTTIVESGLDIPTANTL 902 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCI--LLYHPPLSKNSYTRLSVLKNTED---GF 618 II A+ FGLAQL+QLRGRVGR + + I L ++ + RL VL++ + GF Sbjct: 903 IIHRADMFGLAQLYQLRGRVGRSKTRAYAIFTLPAEKQVTAQAERRLKVLQSLDTLGAGF 962 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668 +A DL R G +LG +QSG K + EL+ +LE A + K +T Sbjct: 963 QLASHDLDIRGAGNLLGDEQSGHIKEV--GYELYQEMLEEAIANLKAGIT 1010 >gi|210608664|ref|ZP_03287941.1| hypothetical protein CLONEX_00120 [Clostridium nexile DSM 1787] gi|210152921|gb|EEA83927.1| hypothetical protein CLONEX_00120 [Clostridium nexile DSM 1787] Length = 1112 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 134/403 (33%), Positives = 227/403 (56%), Gaps = 17/403 (4%) Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI+ +DM M R++ GDVG GKT +A+ A AV+ Q V + P ILAQQHY Sbjct: 572 AIEATKKDMESTKIMDRLICGDVGYGKTEIAIRAAFKAVQENKQVVYLVPTTILAQQHYN 631 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 + + + V+++ A ++K +E G I++GTH + +++ L L+I Sbjct: 632 TFVQRMKEFPVRVDLMCRFRTPAQQKKTIEDTKRGLVDIVVGTHRVLSKDLEFKDLGLLI 691 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 +DE+ RFGVQ + ++ + VL +TATPIPRTL ++ +G D+S + E P R PI+ Sbjct: 692 IDEEQRFGVQHKEQIKKLKENIDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPVDRMPIQ 751 Query: 460 TVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518 T ++ N DE++ E ++ LS + Y++ ++++ E + ++ L +++ Sbjct: 752 TYVMEYN--DEMVREAIQRELSRQGQVYYVYNKVKDIDE-----ITDKVQKLVPE--ANV 802 Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578 A HG+M + + E++M F NG +L++TT+IE G+D+ +A+ +II +A+ GL+Q++Q Sbjct: 803 AFAHGQMKERELENIMLDFINGEIDVLVSTTIIETGLDISNANTMIIHDADQLGLSQMYQ 862 Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633 LRGRVGR ++ LLY L + + RLS ++ D GF IA DL+ R G + Sbjct: 863 LRGRVGRSNRMAYAFLLYKRDKLLREVAEKRLSAIREFTDLGSGFKIAMRDLEIRGAGNL 922 Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676 LG +Q G + + +L+ +L A K K + ++P T+V Sbjct: 923 LGAEQHGHMEAV--GYDLYCKMLNEAVKQLKGEIEEEPYTTTV 963 >gi|194289485|ref|YP_002005392.1| transcription-repair ATP-dependent coupling factor, helicase [Cupriavidus taiwanensis LMG 19424] gi|193223320|emb|CAQ69325.1| transcription-repair ATP-dependent coupling factor, helicase [Cupriavidus taiwanensis LMG 19424] Length = 1149 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 147/431 (34%), Positives = 224/431 (51%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W R A ++ L R+ ++ P++ K + + F T Q Sbjct: 556 QWDKAKRRAAQQIRDTAAELLNLYARRAAREGFAFPLSP--KDYETFAESFGFEETPDQA 613 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q ++AP +LA+QH+ Sbjct: 614 AAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVLGGKQVAMLAPTTLLAEQHF 673 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + + ++ + A+++I G I+IGTH + D +++ +L LV Sbjct: 674 QTLSDRFAEWPVRIVELSRFKTKKEIDAAIKQINEGSVDIVIGTHKILSDQVKFQRLGLV 733 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+HRFGV+Q+ L VL +TATPIPRTL + G D S I P R I Sbjct: 734 IIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 793 Query: 459 KTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 KT + R ++ + R ++ L G + Y++ ++E E K + +V Sbjct: 794 KTF---VRREEDGVIREAILRELKRGGQVYFLHNEVETIENKRARLAELVPE-------- 842 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA+ HG+M + + E VM F + +L+ TT+IE GIDV A+ I+I A+ FGLA Sbjct: 843 -ARIAVAHGQMHERELERVMRDFVSRRDNILLCTTIIETGIDVPTANTILIHRADKFGLA 901 Query: 575 QLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629 QLHQLRGRVGR + LL H L+K + RL ++ E+ GF +A DL+ R Sbjct: 902 QLHQLRGRVGRSHHQAYAYLLVHDVDGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRG 961 Query: 630 EGEILGIKQSG 640 GE+LG KQSG Sbjct: 962 AGEVLGDKQSG 972 >gi|261403915|ref|YP_003240156.1| transcription-repair coupling factor [Paenibacillus sp. Y412MC10] gi|261280378|gb|ACX62349.1| transcription-repair coupling factor [Paenibacillus sp. Y412MC10] Length = 1175 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 132/378 (34%), Positives = 211/378 (55%), Gaps = 17/378 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q AI +I +DM Q M R+L GDVG GKT VA+ A A G Q ++ P Sbjct: 610 PYDETPDQLRAITEIKKDMEQNRPMDRLLCGDVGYGKTEVAVRAAFKAAIEGKQVAVLVP 669 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHYE ++ N I +++++ + + + ++++ G I+IGTH L Sbjct: 670 TTILAQQHYETFRERFANYPINIQVLSRFRSRKEQNETIKKVKQGSVDILIGTHRLLSQD 729 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I + L L+IVDE+ RFGV + KL + T VL +TATPIPRTL ++ LG D+S I Sbjct: 730 IVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNIDVLTLTATPIPRTLHMSMLGVRDLSVIE 789 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R P++T ++ ++ + E IER L+ G + Y++ +++ + + + Sbjct: 790 TPPENRFPVQTYVVEHSQTLVREAIER---ELARGGQVYYLYNRVQ-----GIQEMAAQI 841 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + L + + + HG+MS+ + E + F +G +L++T++IE G+D+ + + +I+ + Sbjct: 842 SMLVPE--ARVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHD 899 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622 A+ GL+QL+QLRGRVGR I+ Y L++ + RL +K TE GF IA Sbjct: 900 ADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAM 959 Query: 623 EDLKQRKEGEILGIKQSG 640 DL R G +LG +Q G Sbjct: 960 RDLSIRGAGNLLGAEQHG 977 >gi|73663562|ref|YP_302343.1| transcription-repair coupling factor [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123761497|sp|Q49V12|MFD_STAS1 RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|72496077|dbj|BAE19398.1| transcription-repair coupling factor [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 1170 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 146/382 (38%), Positives = 213/382 (55%), Gaps = 21/382 (5%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q +I++I QDM + M R+L GDVG GKT VA+ A AV G Q + Sbjct: 616 DFPYELTPDQSKSIEEIKQDMEIERPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 675 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHYE + + Q+ I V++I+ ++ E + G I++GTH L Sbjct: 676 VPTTILAQQHYETLIERMQDFPIEVQLISRFRTTKEVKETKEGLKSGFVDIVVGTHKLLG 735 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 IQY L L+IVDE+ RFGV+ + ++ VL +TATPIPRTL ++ LG D+S Sbjct: 736 KDIQYKDLGLLIVDEEQRFGVRHKERIKSLKNNVDVLTLTATPIPRTLHMSMLGVRDLSV 795 Query: 448 ITEKPAGRKPIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R P++T ++ N I E +ER LS + +++ +++ S+ E Sbjct: 796 IETPPENRFPVQTYVLEQNTNFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 844 Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L ++I + HG+M++ D E M SF N +++ TT+IE G+DV +A+ +I Sbjct: 845 KREQLQMLMPDANIGVAHGQMNERDLEETMLSFINHEYDIIVTTTIIETGVDVPNANTLI 904 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618 IE+A+ FGL+QL+QLRGRVGR I L HP LS+ + RL +K TE GF Sbjct: 905 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPTNKVLSETAEDRLQAIKEFTELGSGF 963 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 IA DL R G +LG +Q G Sbjct: 964 KIAMRDLNIRGAGNLLGKQQHG 985 >gi|28197977|ref|NP_778291.1| transcription-repair coupling factor [Xylella fastidiosa Temecula1] gi|182680603|ref|YP_001828763.1| transcription-repair coupling factor [Xylella fastidiosa M23] gi|28056037|gb|AAO27940.1| transcription-repair coupling factor [Xylella fastidiosa Temecula1] gi|182630713|gb|ACB91489.1| transcription-repair coupling factor [Xylella fastidiosa M23] Length = 1195 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 141/431 (32%), Positives = 229/431 (53%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W+ R+ +A ++ + R+Q + G+ + ++ + + PF T Q Sbjct: 599 QWSKAKRKAAEKVRDVAAELLEIQARRQARA--GLALRIDRTMYEPFAAGFPFEETPDQL 656 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI+ L+D+ M R++ GDVG GKT VA+ A AA AG Q ++ P +LA+QHY Sbjct: 657 AAIETTLRDLQSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVLVPTTLLAEQHY 716 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + I VE+++ + L++++ G +I+GTH L Q +++ L LV Sbjct: 717 RNFRDRFADYPIRVEVLSRFKSTKEIKAELQKVSEGTMDVIVGTHRLLQPDVKFKDLGLV 776 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+Q+ L H+L +TATPIPRTL + G D+S I P R + Sbjct: 777 IVDEEQRFGVRQKEALKSLRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPLNRLAV 836 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVERFNSLHEHF 514 +T I P + + E +R L+ G + Y++ +E + + + +V Sbjct: 837 QTFITPWDNALLHEAFQR---ELARGGQLYFLHNDVESIGRMQRDLAQLVPE-------- 885 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + I I HG+M + + E VM F+ +L++TT+IE GID+ +A+ III A+ FGLA Sbjct: 886 -ARIGIAHGQMPERELERVMLDFQKQHFNVLLSTTIIESGIDIPNANTIIINRADRFGLA 944 Query: 575 QLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629 QLHQLRGRVGR + L+ ++ ++ RL + + ++ GF +A DL+ R Sbjct: 945 QLHQLRGRVGRSHHRAYAYLVVPDRRSMTADAEKRLEAIASMDELGAGFTLATHDLEIRG 1004 Query: 630 EGEILGIKQSG 640 GE+LG QSG Sbjct: 1005 AGELLGEDQSG 1015 >gi|296118194|ref|ZP_06836775.1| transcription-repair coupling factor [Corynebacterium ammoniagenes DSM 20306] gi|295968752|gb|EFG81996.1| transcription-repair coupling factor [Corynebacterium ammoniagenes DSM 20306] Length = 1223 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 151/523 (28%), Positives = 263/523 (50%), Gaps = 29/523 (5%) Query: 131 KLKNRI---IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE-ALSRL--PV 184 K +NR+ + ++ H + + L A ++ TG + I++E A S+ P Sbjct: 497 KRRNRVDPLALKQGDFVVHETHGIGKFLKMAERTIQTGEESSRREYIVLEYAPSKRGQPA 556 Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244 W+ D L S + E+ ++ K +W + ++ A +AG++ L + Sbjct: 557 DQLWVPMDSLDMLSKYTGGESPHL----SKMGGSDWKNTKKKARAAVREIAGELVELYAK 612 Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304 +Q P + ++ ++ N P+ T+ Q AI + +DM + M R++ GDVG Sbjct: 613 RQAAPGHQFPPDTPWQM--EMEDNFPYVETEDQMMAIDAVKEDMESQVPMDRVIVGDVGY 670 Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364 GKT VA+ A AV+ G Q ++ P +LAQQHY+ + + + +++ Sbjct: 671 GKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHYDTFVERMGGFPLEIRVLSRFTSTKES 730 Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424 ++ ++++A G+ ++IGTH L Q + + L L+IVDE+ RFGV+ + + + VL Sbjct: 731 KEIIKQLATGEIDVVIGTHRLLQTGVHWKSLGLIIVDEEQRFGVEHKEHIKALKASVDVL 790 Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484 M+ATPIPRTL ++ G ++S I P R P+ T + +V ++ L + Sbjct: 791 TMSATPIPRTLEMSMAGIREMSTILTPPEDRHPVLTYVGAYED-KQVAAAIRRELLRDGQ 849 Query: 485 AYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542 ++I ++ EKK R +V + + + HG+M++ E + F + Sbjct: 850 TFFIHNKVADIEKKAREIRDLVPE---------ARVVVAHGQMNEELLEKTVQGFWDREY 900 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPL 600 +L+ TT++E G+D+ +A+ +I+ENA H GL+QLHQLRGRVGR E LY L Sbjct: 901 DVLVCTTIVETGLDISNANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGATL 960 Query: 601 SKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 ++ SY RL+ + D G +A +DL+ R G +LG +QSG Sbjct: 961 TETSYDRLATIAQNNDLGAGMDVAMKDLEMRGAGNVLGAQQSG 1003 >gi|169830290|ref|YP_001716272.1| transcription-repair coupling factor [Candidatus Desulforudis audaxviator MP104C] gi|169637134|gb|ACA58640.1| transcription-repair coupling factor [Candidatus Desulforudis audaxviator MP104C] Length = 1176 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 125/379 (32%), Positives = 209/379 (55%), Gaps = 17/379 (4%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 PF T Q AI + +DM + M R+L GDVG GKT VA+ A+ AV G QA ++ Sbjct: 621 FPFEETPDQLKAIMQVKKDMERPRPMDRLLCGDVGYGKTEVAMRAVFKAVTDGKQAAVLV 680 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQH + ++ +++E+++ +++ L +A G+ I+IGTH L QD Sbjct: 681 PTTVLAQQHLQTFRERFNGYPVVIEMLSRFRSVREQKQVLADLAAGKVDIVIGTHRLVQD 740 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 +Q+ L L++VDE+ RFGV + KL + V+ +TATPIPRTL ++ +G D S + Sbjct: 741 DVQFADLGLIVVDEEQRFGVLHKEKLKLRHPNVDVITLTATPIPRTLYMSLVGIRDTSLL 800 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R P++T ++ + + + E + L+ G + Y++ ++ E ++R Sbjct: 801 ETPPLDRFPVQTFVVEEDPV-LIREAVGRELARGGQVYFVHNRVFE---------LDRVA 850 Query: 509 SLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 + + IA+ HG+M + E VM F G +L+ TT+IE G+D+ + + ++++ Sbjct: 851 GWLQELVPEARIAVAHGQMREDQLEQVMLDFVAGAYDVLVCTTIIETGLDITNVNTLVVK 910 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIA 621 A+ GLAQL+QLRGRVGR ++ + L + + RL +++ D GF +A Sbjct: 911 EADQLGLAQLYQLRGRVGRSNRLAYAYFTFRRDRLLGEAAEKRLRAIRDFTDFGSGFRLA 970 Query: 622 EEDLKQRKEGEILGIKQSG 640 + DL+ R G +LG +Q G Sbjct: 971 KRDLEIRGAGNLLGTEQHG 989 >gi|237722279|ref|ZP_04552760.1| transcription-repair coupling factor [Bacteroides sp. 2_2_4] gi|229448089|gb|EEO53880.1| transcription-repair coupling factor [Bacteroides sp. 2_2_4] Length = 1124 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 138/409 (33%), Positives = 217/409 (53%), Gaps = 17/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + Q ++E G + + + +++ + + T Q A D+ DM M R++ Sbjct: 526 LIKLYSQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSKATIDVKADMESDRPMDRLVC 585 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LA QH++ ++ + VE ++ Sbjct: 586 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRERLKGLPCRVEYLSRAR 645 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A + L+ + G I+IGTH + +Q+ L L+IVDE+ +FGV + KL Q Sbjct: 646 TAAQTKAVLKGLKDGDVGILIGTHRILGKDVQFKDLGLLIVDEEQKFGVSVKEKLRQLKV 705 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478 L MTATPIPRTL + +G D+S I+ P R PI+T + N +EVI + + Sbjct: 706 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFN--EEVITDAINFE 763 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537 +S + +++ +I E ++++ER H +AI HG+M + E ++ F Sbjct: 764 MSRNGQVFFVNNRIANLPE--LKAMIER------HIPDCRVAIGHGQMEPTELEKIILDF 815 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 N +L+ATT+IE GID+ +A+ III A++FGL+ LHQ+RGRVGR + + C LL Sbjct: 816 VNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAP 875 Query: 598 P--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 P L+ RL ++N D G IA +DL R G +LG +QSG Sbjct: 876 PLGSLTAEGRRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGF 924 >gi|217076282|ref|YP_002333998.1| transcription-repair coupling factor [Thermosipho africanus TCF52B] gi|217036135|gb|ACJ74657.1| transcription-repair coupling factor [Thermosipho africanus TCF52B] Length = 909 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 133/404 (32%), Positives = 229/404 (56%), Gaps = 19/404 (4%) Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302 +RK K GI + + ++ ++ + P T+ Q AI+++ +D+S + M R+L GD Sbjct: 364 LRKNTK---GISLPGDSELEKEFAKTFPHIETQDQLKAIQEVSEDLSSEKNMDRLLAGDA 420 Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362 G GKT VA+ A A +G Q ++ P +LA+QHYE KK + I VE+ ++ + Sbjct: 421 GYGKTEVAMRAAFKAAISGKQVAVLVPTTVLARQHYENFKKRFEPFGINVELYDSSLTKK 480 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 + + ++I G ++IGTH L + SI++ L L+I+DE+ +FGVQQ+ L + + Sbjct: 481 QKDEVKQKIETGITDVVIGTHGLLK-SIKFSDLGLLIIDEEQKFGVQQKEALKKLRINVN 539 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LS 480 +L M+ATPIPRTL + G D+S I P GRK I+ + +N DE I R ++ ++ Sbjct: 540 ILSMSATPIPRTLHMALSGIKDMSVIKTPPFGRKNIQ---VYVNTYDEKIIRQAIMREIN 596 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540 G + ++ ++ ++ V ++ + SI I +G+M E V++ F +G Sbjct: 597 RGGQVLYVHNRV-----NDIEDVAKKLKEIVPEV--SIDIANGQMPKKRMEKVIEEFYHG 649 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 +L+AT++IE G+D+ +A+ +I+++A +GLAQL+QLRGRVGR ++ + + + Sbjct: 650 KLDVLVATSIIENGVDIPNANTLIVDDAHRYGLAQLYQLRGRVGRSDKRAFAYFFHPSKI 709 Query: 601 SKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGIKQSGM 641 +K + RL +K GF IA +D++ R G ILG++Q G Sbjct: 710 NKVAKERLKAIKEIMGPGSGFQIALKDMEIRGIGNILGLEQHGF 753 >gi|332291666|ref|YP_004430275.1| transcription-repair coupling factor [Krokinobacter diaphorus 4H-3-7-5] gi|332169752|gb|AEE19007.1| transcription-repair coupling factor [Krokinobacter diaphorus 4H-3-7-5] Length = 1137 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 133/410 (32%), Positives = 221/410 (53%), Gaps = 18/410 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T Q SA +D+ +DM + M R++ GDVG GKT VA+ A AV+ G Q ++ P Sbjct: 558 YEDTPDQSSATEDVKRDMESERPMDRLVCGDVGFGKTEVAIRAAFKAVDGGKQVAVLVPT 617 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 ILA QH K+ ++ + ++ + +R+ L + G I+IGTH L ++ Sbjct: 618 TILAYQHARTFKERLKDFPVKIDYLNRFRTAKEKREVLAGLESGAIDIVIGTHQLTSKNV 677 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + L L+++DE+ +FGV + KL + L +TATPIPRTL + + D+S I Sbjct: 678 NFKDLGLLVIDEEQKFGVAVKDKLKTISETVDTLTLTATPIPRTLQFSLMAARDLSTINT 737 Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P R PI++ ++ + +EVI + ++ + G + ++I +IE KE +++R Sbjct: 738 APPNRYPIESNVVRFS--EEVIRDAVQYEIQRGGQVFFIHNRIENIKE--VAGLIQRLVP 793 Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 + + I HG+M E+ M SF NG +L++TT+IE G+DV +A+ I I NA Sbjct: 794 -----DAKVGIGHGQMEGKTLEAKMLSFMNGEFDVLVSTTIIESGLDVPNANTIFINNAN 848 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEED 624 +FGL+ LHQ+RGRVGR + + C + P ++ ++ R+ L+ GF IA +D Sbjct: 849 NFGLSDLHQMRGRVGRSNKKAFCYFITPPYSAMTDDARKRIQALEQFSVLGSGFNIAMKD 908 Query: 625 LKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDP 671 L+ R G++LG +QSG F Q L++++ E+ + + DP Sbjct: 909 LEIRGAGDLLGGEQSGFINEIGFDTYQKILNEAIDELKEDEFSELYNDDP 958 >gi|294643129|ref|ZP_06720961.1| transcription-repair coupling factor [Bacteroides ovatus SD CC 2a] gi|292641537|gb|EFF59723.1| transcription-repair coupling factor [Bacteroides ovatus SD CC 2a] Length = 1119 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 138/409 (33%), Positives = 217/409 (53%), Gaps = 17/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + Q ++E G + + + +++ + + T Q A D+ DM M R++ Sbjct: 521 LIKLYSQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSKATIDVKADMESDRPMDRLVC 580 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LA QH++ ++ + VE ++ Sbjct: 581 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRERLKGLPCRVEYLSRAR 640 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A + L+ + G I+IGTH + +Q+ L L+IVDE+ +FGV + KL Q Sbjct: 641 TAAQTKAVLKGLKDGDVGILIGTHRILGKDVQFKDLGLLIVDEEQKFGVSVKEKLRQLKV 700 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478 L MTATPIPRTL + +G D+S I+ P R PI+T + N +EVI + + Sbjct: 701 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFN--EEVITDAINFE 758 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537 +S + +++ +I E ++++ER H +AI HG+M + E ++ F Sbjct: 759 MSRNGQVFFVNNRIANLPE--LKAMIER------HIPDCRVAIGHGQMEPTELEKIILDF 810 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 N +L+ATT+IE GID+ +A+ III A++FGL+ LHQ+RGRVGR + + C LL Sbjct: 811 VNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAP 870 Query: 598 P--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 P L+ RL ++N D G IA +DL R G +LG +QSG Sbjct: 871 PLGSLTAEGRRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGF 919 >gi|163760200|ref|ZP_02167283.1| transcription-repair coupling factor (TRCF) protein [Hoeflea phototrophica DFL-43] gi|162282599|gb|EDQ32887.1| transcription-repair coupling factor (TRCF) protein [Hoeflea phototrophica DFL-43] Length = 1168 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 144/419 (34%), Positives = 231/419 (55%), Gaps = 28/419 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q +AI+ + D+++ M R++ GDVG GKT VAL A A G Q ++ P Sbjct: 622 PYDETEDQMAAIERVRGDLAEGRPMDRLVCGDVGFGKTEVALRAAFIAAMNGVQVAVVVP 681 Query: 330 IGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALER--IAHGQAHIIIGTHALF 386 +LA+QH+ K +T+ + V I + + AL + +A G+ I++GTHAL Sbjct: 682 TTLLARQHF---KTFTERLRGYPVRIAQASRLVGAKELALTKAELASGKTDIVVGTHALL 738 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 SIQ+ L L+I+DE+ FGV+ + +L + + HVL ++ATPIPRTL L G ++S Sbjct: 739 GSSIQFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELS 798 Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--SNFRSVV 504 IT P R ++T I P + + V E L G +++++CP++ + E + RS V Sbjct: 799 LITTAPVDRMAVRTFISPFDPV-TVRETLMREHYRGGQSFYVCPRVSDLDEVAAFLRSDV 857 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 AI HG+M + + +M++F +G +L++TT++E G+DV A+ +I Sbjct: 858 PELK---------FAIAHGQMGAGELDDIMNAFYDGQYDVLLSTTIVESGLDVPTANTLI 908 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTED---GF 618 + A+ FGLAQL+QLRGRVGR ++ + L P L+ + RL VL++ + GF Sbjct: 909 VHRADMFGLAQLYQLRGRVGR-SKVRAFALFTLPVNKTLTATADKRLKVLQSLDTLGAGF 967 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLT 674 +A DL R G +LG +QSG K F + Q L +++ E+ +DA P +T Sbjct: 968 QLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQHMLEEAVAEVRGEDAHVDTGWSPQIT 1026 >gi|296140872|ref|YP_003648115.1| transcription-repair coupling factor [Tsukamurella paurometabola DSM 20162] gi|296029006|gb|ADG79776.1| transcription-repair coupling factor [Tsukamurella paurometabola DSM 20162] Length = 1218 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 127/378 (33%), Positives = 204/378 (53%), Gaps = 17/378 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF+ T Q + I D+ DM + M R++ GDVG GKT +A+ A AV+ G Q ++ P Sbjct: 641 PFTETVDQMTVIGDVKSDMEKAVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVP 700 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQH + Q + V+ ++ + + LE +A G I++GTH L Q Sbjct: 701 TTLLAQQHLKTFVDRMQGFPVTVKGLSRFTDRHETEQVLEGLADGSVDIVVGTHRLLQTG 760 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +++ L LV+VDE+ RFGV+ + + T VL M+ATPIPRTL ++ G ++S I Sbjct: 761 VRWKDLGLVVVDEEQRFGVEHKEHIKALRTNVDVLTMSATPIPRTLEMSMAGIREMSTIL 820 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERF 507 P R P+ T + P + +V ++ L + +++ ++ +K R +V Sbjct: 821 TPPEERHPVLTYVGPYDN-KQVAAAIRRELLRDGQVFYVHNRVSSIDKAAKQIRDMVPE- 878 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + + + HG+M + ES + F N +L+ TT++E G+D+ +A+ +I+E Sbjct: 879 --------ARVVVAHGQMGEEALESTVQGFWNREFDVLVCTTIVETGLDISNANTLIVER 930 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAE 622 AE+ GL+QLHQLRGRVGR E LY PL++ +Y RLS + + G +A Sbjct: 931 AENLGLSQLHQLRGRVGRSRERGYAYFLYPSEKPLTETAYDRLSTIAQNNELGAGMAVAM 990 Query: 623 EDLKQRKEGEILGIKQSG 640 +DL+ R G +LG +QSG Sbjct: 991 KDLEIRGAGNVLGAEQSG 1008 >gi|237715944|ref|ZP_04546425.1| transcription-repair coupling factor [Bacteroides sp. D1] gi|229443591|gb|EEO49382.1| transcription-repair coupling factor [Bacteroides sp. D1] Length = 1131 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 138/409 (33%), Positives = 217/409 (53%), Gaps = 17/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + Q ++E G + + + +++ + + T Q A D+ DM M R++ Sbjct: 533 LIKLYSQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSKATIDVKADMESDRPMDRLVC 592 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LA QH++ ++ + VE ++ Sbjct: 593 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRERLKGLPCRVEYLSRAR 652 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A + L+ + G I+IGTH + +Q+ L L+IVDE+ +FGV + KL Q Sbjct: 653 TAAQTKAVLKGLKDGDVGILIGTHRILGKDVQFKDLGLLIVDEEQKFGVSVKEKLRQLKV 712 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478 L MTATPIPRTL + +G D+S I+ P R PI+T + N +EVI + + Sbjct: 713 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFN--EEVITDAINFE 770 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537 +S + +++ +I E ++++ER H +AI HG+M + E ++ F Sbjct: 771 MSRNGQVFFVNNRIANLPE--LKAMIER------HIPDCRVAIGHGQMEPTELEKIILDF 822 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 N +L+ATT+IE GID+ +A+ III A++FGL+ LHQ+RGRVGR + + C LL Sbjct: 823 VNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAP 882 Query: 598 P--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 P L+ RL ++N D G IA +DL R G +LG +QSG Sbjct: 883 PLGSLTAEGRRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGF 931 >gi|149278180|ref|ZP_01884318.1| transcription-repair coupling factor [Pedobacter sp. BAL39] gi|149230946|gb|EDM36327.1| transcription-repair coupling factor [Pedobacter sp. BAL39] Length = 1114 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 141/436 (32%), Positives = 228/436 (52%), Gaps = 24/436 (5%) Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 K ++G + +G + ++ + + T QE A D+ +DM + M R++ GDVG GKT Sbjct: 536 KAQVGTAFDPDGYLETELEASFIYEDTPDQEKATSDVKKDMEAPHPMDRLVCGDVGFGKT 595 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 +A+ A AV G QA ++ P ILA QH++ ++ V+ I + Sbjct: 596 EIAIRAAFKAVANGKQAAVLVPTTILALQHFKTFSGRLKDFPCNVDYINRFKTNKQIKDT 655 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 L +A G+ IIIGTH L +++ L ++I+DE+ +FGV + KL L +T Sbjct: 656 LALLAEGKVDIIIGTHRLLSKDVKFKDLGIMIIDEEQKFGVTSKEKLRVLRANVDTLTLT 715 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAY 486 ATPIPRTL + +G D+S ++ P R+ + T + N D++I E ++ L G + + Sbjct: 716 ATPIPRTLHFSLMGARDLSIMSTPPPNRQAVNTELHVFN--DKLIQEAVQYELDRGGQVF 773 Query: 487 WICPQIEEKKESN--FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544 +I ++ + + +++V + + I I HG++ E VM F NG + Sbjct: 774 FIHNRVNDLPQLGGLIQTLVPK---------ARIGIAHGQLDGDALEDVMLDFINGEKDV 824 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS--- 601 L+ATT+IE G+D+ +A+ III +A FGL+ LHQ+RGRVGR + + C LL PPLS Sbjct: 825 LVATTIIEAGLDIPNANTIIINHAHMFGLSDLHQMRGRVGRSNKKAFCYLL-SPPLSTLT 883 Query: 602 KNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSL 655 + RLS ++ D GF IA DL R G +LG +QSG F + L +++ Sbjct: 884 SEARKRLSAIEEFSDLGSGFNIAMRDLDIRGSGNLLGAEQSGFIAEIGFEMYHKILDEAI 943 Query: 656 LEIARKDAKHILTQDP 671 E+ + K + +P Sbjct: 944 QELKDDEFKELFKNEP 959 >gi|150007271|ref|YP_001302014.1| putative transcription-repair coupling factor [Parabacteroides distasonis ATCC 8503] gi|149935695|gb|ABR42392.1| putative transcription-repair coupling factor [Parabacteroides distasonis ATCC 8503] Length = 1120 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 136/407 (33%), Positives = 216/407 (53%), Gaps = 13/407 (3%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+L+ + K+E G + + ++ + + T Q A ++ DM M R++ Sbjct: 523 LILLYSKRKQETGFAYTPDSFMQHELEASFIYEDTPDQMKATAEVKADMESTRPMDRLIC 582 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LA QHY+ + ++ ++ I+ Sbjct: 583 GDVGFGKTEVAIRAAFKAVSDNKQVAVLVPTTVLAFQHYQTFCERLKDFPCKIDYISRAR 642 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A + L+ + G+ +I+IGTH + +++ L L+I+DE+ +FGV + KL Q Sbjct: 643 TAAQIKATLKELKEGEVNILIGTHRIVGKDVRFKDLGLLIIDEEQKFGVSVKEKLRQLKV 702 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 L MTATPIPRTL + +G D+S IT P R P++T + N D + E + + Sbjct: 703 NVDTLTMTATPIPRTLQFSLMGARDLSSITTPPPNRYPVQTEVERFNP-DIIREAINFEM 761 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 S + ++I +I+ E ++V R E + +A+ HG+M E ++ F N Sbjct: 762 SRNGQVFFINNRIQNIYE--MEALVRR-----EVPDARVAVGHGQMEPEKLEKIILDFVN 814 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP- 598 +LIAT+++E GIDV +A+ III NA+ FGL+ LHQLRGRVGR + C LL P Sbjct: 815 HEYDVLIATSIVESGIDVPNANTIIINNAQQFGLSDLHQLRGRVGRSNRKAFCYLLSPPL 874 Query: 599 -PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 L++ + RL ++N + G IA +DL R G +LG +QSG Sbjct: 875 TSLTQEARRRLQAIENFSELGSGIHIAMQDLDIRGAGNMLGAEQSGF 921 >gi|289643147|ref|ZP_06475276.1| DEAD/DEAH box helicase domain protein [Frankia symbiont of Datisca glomerata] gi|289507039|gb|EFD28009.1| DEAD/DEAH box helicase domain protein [Frankia symbiont of Datisca glomerata] Length = 829 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 120/308 (38%), Positives = 183/308 (59%), Gaps = 25/308 (8%) Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV--EGKI 261 EA+ ++H P D R RL +DE L Q+AL R +K P + +G + Sbjct: 261 EAYRLVHQPSSWADV---GRGRTRLKWDEALVLQVALAQRRHDVEKIAATPRHPRPDGLL 317 Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321 A ++PF T Q + I ++++ M R+LQG+VGSGKT+VAL AM AAV+AG Sbjct: 318 A-AFDASLPFPLTAGQRAVGDTIAAELARSFPMHRLLQGEVGSGKTVVALRAMLAAVDAG 376 Query: 322 GQAVIMAPIGILAQQHYEFIKKY-------------TQNTQIIVEIITGNMPQAHRRKAL 368 GQAV++AP LA QH ++ + T+ + ++TG++ RR+AL Sbjct: 377 GQAVLLAPTETLAAQHLRSLRALLGPLGRAGELDAAAEATRAV--LVTGSLGAKARREAL 434 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMT 427 +A G A +++GTHAL ++S+ + L LV+VDEQHRFGV+QR L ++ PH+L+MT Sbjct: 435 TAVADGSAGLVVGTHALLEESVVFRDLALVVVDEQHRFGVEQRDALRSRSDRPPHLLVMT 494 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKK 484 ATPIPRT+ +T GD+++S +TE PAGR PI T ++P + V R++ ++ G++ Sbjct: 495 ATPIPRTVAMTVFGDLEVSTLTELPAGRSPISTFVVPATAPKWANRVWGRIRDEVAAGRQ 554 Query: 485 AYWICPQI 492 AY +CP+I Sbjct: 555 AYVVCPRI 562 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 61/159 (38%), Positives = 96/159 (60%), Gaps = 1/159 (0%) Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 + +HGR+ +KE M F G +L+ATTVIEVG+DV +A+++++ +A+ FG++QLH Sbjct: 648 VEALHGRLPPDEKEETMTRFAAGELDVLVATTVIEVGVDVPNATVMVVMDADRFGVSQLH 707 Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637 QLRGRVGRG C+L ++ RL+ + T DG +A DL QR+EG++LG Sbjct: 708 QLRGRVGRGSAPGWCLLYTDVEEGSPAWERLAAVAATSDGAELARLDLAQRREGDVLGAA 767 Query: 638 QS-GMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 QS G + + + L+ AR +A ++ DP L++ Sbjct: 768 QSGGRRSLRLLELLRDEELIRCARGEASVLVDADPQLSA 806 >gi|291087006|ref|ZP_06345122.2| transcription-repair coupling factor [Clostridium sp. M62/1] gi|291076614|gb|EFE13978.1| transcription-repair coupling factor [Clostridium sp. M62/1] Length = 1187 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 128/377 (33%), Positives = 212/377 (56%), Gaps = 15/377 (3%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q AI + +DM + M R++ GDVG GKT +AL A A++ G Q V + P Sbjct: 629 PYEETEDQLEAIDAVKRDMESRKIMDRLICGDVGYGKTEIALRAAFKAIQEGKQVVYLVP 688 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHY + ++ + V++++ A +++ LE + G ++IGTH + Sbjct: 689 TTILAQQHYNTFVQRMKDFPVRVDMLSRFRTPAEQKRTLEDLKKGFVDVLIGTHRVLSKD 748 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +++ L L+I+DE+ RFGV + K+ + V+ +TATPIPRTL ++ +G D+S + Sbjct: 749 VEFKSLGLLIIDEEQRFGVAHKEKIKKLKENVDVITLTATPIPRTLHMSLIGIRDMSVLE 808 Query: 450 EKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 E P R PI+T ++ N DE++ E + ++ G + Y++ ++ +N + Sbjct: 809 EPPVDRLPIQTYVMEYN--DEMVREAINREVARGGQVYYVYNRV-----NNIEEIANHVA 861 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 SL + + HG+M + + E +M F NG +L++TT+IE G+++ +A+ III +A Sbjct: 862 SLVPD--AQVTFAHGQMREHELERIMLDFVNGDIDVLVSTTIIETGLNIPNANTIIIHDA 919 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623 + GL+QL+Q+RGRVGR S L+Y L + + RL ++ TE G IA Sbjct: 920 DRLGLSQLYQIRGRVGRSSRTSYAFLMYRRDKLLREEAEKRLQAIREFTELGSGIKIAMR 979 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R G ILG +Q G Sbjct: 980 DLEIRGAGNILGAEQHG 996 >gi|313884578|ref|ZP_07818339.1| transcription-repair coupling factor [Eremococcus coleocola ACS-139-V-Col8] gi|312620362|gb|EFR31790.1| transcription-repair coupling factor [Eremococcus coleocola ACS-139-V-Col8] Length = 1181 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 126/378 (33%), Positives = 212/378 (56%), Gaps = 19/378 (5%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q ++ ++I DM + M R+L GDVG GKT VA+ A+ AV G Q + P Sbjct: 623 FVETPDQLTSSQEIKADMEKSRPMDRLLVGDVGYGKTEVAMRAIFKAVMDGKQVAFLVPT 682 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LAQQHY ++ + + +++ + + +++ + ++ G I++GTH + I Sbjct: 683 TVLAQQHYNTLQARFNDWPFEIGLLSRFVSRVQQKETIAKLKSGAVSIVVGTHRILSKDI 742 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + L L+IVDE+ RFGV+ + +L Q VL +TATPIPRTL ++ +G D+S I Sbjct: 743 VFNDLGLLIVDEEQRFGVKHKERLKQLKAQVDVLTLTATPIPRTLHMSMIGIRDLSVIET 802 Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R P++T I+ N I IER ++ G + +++ ++ ++ +R + Sbjct: 803 PPNNRFPVQTYIMERNEGAIKTAIER---EMARGGQCFYLYNRVA--------TIYQRAD 851 Query: 509 SLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + + + +A+ HG+MS+ + E+V+ F G +L+ TT+IE G+D+ +A+ + +++ Sbjct: 852 EISQLVPQARVAVAHGQMSETELETVLVDFIQGLYDVLVTTTIIETGVDIPNANTLFVDH 911 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAE 622 A+ GL+ L+QLRGRVGR ++ L+Y P LS+ S RL ++ D GF IA Sbjct: 912 ADKMGLSTLYQLRGRVGRTHRVAYAYLMYEPFKQLSEVSEKRLKAIREFTDLGSGFKIAM 971 Query: 623 EDLKQRKEGEILGIKQSG 640 DL R G +LG +QSG Sbjct: 972 RDLSIRGAGNLLGKQQSG 989 >gi|260170991|ref|ZP_05757403.1| transcription-repair coupling factor [Bacteroides sp. D2] gi|315919312|ref|ZP_07915552.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693187|gb|EFS30022.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1120 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 138/409 (33%), Positives = 217/409 (53%), Gaps = 17/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + Q ++E G + + + +++ + + T Q A D+ DM M R++ Sbjct: 526 LIKLYSQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSKATIDVKADMESDRPMDRLVC 585 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LA QH++ ++ + VE ++ Sbjct: 586 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRERLKGLPCRVEYLSRAR 645 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A + L+ + G I+IGTH + +Q+ L L+IVDE+ +FGV + KL Q Sbjct: 646 TAAQTKAVLKGLKDGDVGILIGTHRILGKDVQFKDLGLLIVDEEQKFGVSVKEKLRQLKV 705 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478 L MTATPIPRTL + +G D+S I+ P R PI+T + N +EVI + + Sbjct: 706 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFN--EEVITDAINFE 763 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537 +S + +++ +I E ++++ER H +AI HG+M + E ++ F Sbjct: 764 MSRNGQVFFVNNRIANLPE--LKAMIER------HIPDCRVAIGHGQMEPTELEKIILDF 815 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 N +L+ATT+IE GID+ +A+ III A++FGL+ LHQ+RGRVGR + + C LL Sbjct: 816 VNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAP 875 Query: 598 P--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 P L+ RL ++N D G IA +DL R G +LG +QSG Sbjct: 876 PLGSLTAEGRRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGF 924 >gi|160882450|ref|ZP_02063453.1| hypothetical protein BACOVA_00401 [Bacteroides ovatus ATCC 8483] gi|156112162|gb|EDO13907.1| hypothetical protein BACOVA_00401 [Bacteroides ovatus ATCC 8483] Length = 1120 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 138/409 (33%), Positives = 217/409 (53%), Gaps = 17/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + Q ++E G + + + +++ + + T Q A D+ DM M R++ Sbjct: 526 LIKLYSQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSKATIDVKADMESDRPMDRLVC 585 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LA QH++ ++ + VE ++ Sbjct: 586 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRERLKGLPCRVEYLSRAR 645 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A + L+ + G I+IGTH + +Q+ L L+IVDE+ +FGV + KL Q Sbjct: 646 TAAQTKAVLKGLKDGDVGILIGTHRILGKDVQFKDLGLLIVDEEQKFGVSVKEKLRQLKV 705 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478 L MTATPIPRTL + +G D+S I+ P R PI+T + N +EVI + + Sbjct: 706 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFN--EEVITDAINFE 763 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537 +S + +++ +I E ++++ER H +AI HG+M + E ++ F Sbjct: 764 MSRNGQVFFVNNRIANLPE--LKAMIER------HIPDCRVAIGHGQMEPTELEKIILDF 815 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 N +L+ATT+IE GID+ +A+ III A++FGL+ LHQ+RGRVGR + + C LL Sbjct: 816 VNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAP 875 Query: 598 P--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 P L+ RL ++N D G IA +DL R G +LG +QSG Sbjct: 876 PLGSLTAEGRRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGF 924 >gi|298384566|ref|ZP_06994126.1| transcription-repair coupling factor [Bacteroides sp. 1_1_14] gi|298262845|gb|EFI05709.1| transcription-repair coupling factor [Bacteroides sp. 1_1_14] Length = 1127 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 138/410 (33%), Positives = 219/410 (53%), Gaps = 19/410 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + Q ++E G + + + +++ + + T Q A ++ DM M R++ Sbjct: 526 LIKLYSQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSKATMEVKADMESDRPMDRLVC 585 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LA QH++ ++ ++ VE ++ Sbjct: 586 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRERLKDLPCRVEYLSRAR 645 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A + L+ + G+ I+IGTH + +Q+ L L+I+DE+ +FGV + KL Q Sbjct: 646 TAAQSKAVLKGLKEGEVSILIGTHRILGKDVQFKDLGLLIIDEEQKFGVSVKEKLRQLKV 705 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478 L MTATPIPRTL + +G D+S I+ P R PI+T + N +EVI + + Sbjct: 706 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFN--EEVITDAINFE 763 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537 +S + +++ +I E ++++ER H +AI HG+M E ++ F Sbjct: 764 MSRNGQVFFVNNRIANLPE--LKAMIER------HIPDCRVAIGHGQMEPTQLEQIIFDF 815 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 N +L+ATT+IE GID+ +A+ III A++FGL+ LHQ+RGRVGR + + C LL Sbjct: 816 VNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-A 874 Query: 598 PPLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 PPLS RL ++N D G IA +DL R G +LG +QSG Sbjct: 875 PPLSSLTAEGKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGF 924 >gi|295090936|emb|CBK77043.1| transcription-repair coupling factor [Clostridium cf. saccharolyticum K10] Length = 1185 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 128/377 (33%), Positives = 212/377 (56%), Gaps = 15/377 (3%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q AI + +DM + M R++ GDVG GKT +AL A A++ G Q V + P Sbjct: 627 PYEETEDQLEAIDAVKRDMESRKIMDRLICGDVGYGKTEIALRAAFKAIQEGKQVVYLVP 686 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHY + ++ + V++++ A +++ LE + G ++IGTH + Sbjct: 687 TTILAQQHYNTFVQRMKDFPVRVDMLSRFRTPAEQKRTLEDLKKGFVDVLIGTHRVLSKD 746 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +++ L L+I+DE+ RFGV + K+ + V+ +TATPIPRTL ++ +G D+S + Sbjct: 747 VEFKSLGLLIIDEEQRFGVAHKEKIKKLKENVDVITLTATPIPRTLHMSLIGIRDMSVLE 806 Query: 450 EKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 E P R PI+T ++ N DE++ E + ++ G + Y++ ++ +N + Sbjct: 807 EPPVDRLPIQTYVMEYN--DEMVREAINREVARGGQVYYVYNRV-----NNIEEIANHVA 859 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 SL + + HG+M + + E +M F NG +L++TT+IE G+++ +A+ III +A Sbjct: 860 SLVPD--AQVTFAHGQMREHELERIMLDFVNGDIDVLVSTTIIETGLNIPNANTIIIHDA 917 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623 + GL+QL+Q+RGRVGR S L+Y L + + RL ++ TE G IA Sbjct: 918 DRLGLSQLYQIRGRVGRSSRTSYAFLMYRRDKLLREEAEKRLQAIREFTELGSGIKIAMR 977 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R G ILG +Q G Sbjct: 978 DLEIRGAGNILGAEQHG 994 >gi|73541054|ref|YP_295574.1| transcription-repair coupling factor [Ralstonia eutropha JMP134] gi|72118467|gb|AAZ60730.1| Transcription-repair coupling factor [Ralstonia eutropha JMP134] Length = 1150 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 148/431 (34%), Positives = 224/431 (51%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W R A ++ L R+ ++ P++ K + + F T Q Sbjct: 557 QWDKAKRRAAQQIRDTAAELLNLYARRAAREGFAFPLSP--KDYETFAESFGFEETPDQA 614 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q ++AP +LA+QH+ Sbjct: 615 AAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVLGGKQVAMLAPTTLLAEQHF 674 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + + ++ + A+++I G I+IGTH L D +++ +L LV Sbjct: 675 QTLSDRFAEWPVRIVELSRFKTKKEIDAAVKQINEGTVDIVIGTHKLLSDEVKFQRLGLV 734 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+HRFGV+Q+ L VL +TATPIPRTL + G D S I P R I Sbjct: 735 IIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 794 Query: 459 KTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 KT + R ++ + R ++ L G + Y++ ++E E K + +V Sbjct: 795 KTF---VRREEDGVIREAILRELKRGGQVYFLHNEVETIENKRAKLAELVPE-------- 843 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA+ HG+M + + E VM F + +L+ TT+IE GIDV A+ I+I A+ FGLA Sbjct: 844 -ARIAVAHGQMHERELERVMRDFVSRRDNILLCTTIIETGIDVPTANTILIHRADKFGLA 902 Query: 575 QLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629 QLHQLRGRVGR + LL H L+K + RL ++ E+ GF +A DL+ R Sbjct: 903 QLHQLRGRVGRSHHQAYAYLLVHDVDGLTKQAGRRLEAIQQMEELGSGFYLAMHDLEIRG 962 Query: 630 EGEILGIKQSG 640 GE+LG KQSG Sbjct: 963 AGEVLGDKQSG 973 >gi|81429216|ref|YP_396217.1| transcription-repair coupling factor [Lactobacillus sakei subsp. sakei 23K] gi|78610859|emb|CAI55911.1| Transcription-repair coupling factor (TRCF) [Lactobacillus sakei subsp. sakei 23K] Length = 1173 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 144/429 (33%), Positives = 223/429 (51%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW + A E +A + L +++ +K P + ++ + T Q Sbjct: 569 EWQKTKSKVSAKIEDIADDLIELYAQREAEKGYAFPKD--DQLQADFENQFAYPETDDQL 626 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + +I DM + M R+L GDVG GKT VAL A AV AG Q + P ILAQQHY Sbjct: 627 RSTAEIKHDMEKVRPMDRLLVGDVGFGKTEVALRAAFKAVAAGKQVAFLVPTTILAQQHY 686 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + + + + +++ + L+ + GQ I+IGTH L + + L L+ Sbjct: 687 ENMLARFADFPVELGLLSRFKTRKEVTATLKGLEKGQVDIVIGTHRLLSKDVVFKDLGLL 746 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+ + +L Q VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 747 IVDEEQRFGVKHKERLKQLKAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPTNRYPI 806 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T ++ N + E IER L + +++ ++ S+ V+ +L T Sbjct: 807 QTYVMEQNAGAMREAIER---ELERNGQVFYLHNRV-----SDIEQTVDEIQALVPEATV 858 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 A HG+M++ E V+ F G +L+ TT+IE G+D+ + + +I+E+A+H+GL+QL Sbjct: 859 GYA--HGQMTEAQLEGVIYDFVQGKYDVLVTTTIIETGVDMPNVNTMIVEDADHYGLSQL 916 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGR+GR ++ +Y P L++ S RL +K+ TE GF IA DL R G Sbjct: 917 YQLRGRIGRSSRVAYGYFMYKPDKVLTEVSEKRLQAIKDFTELGSGFKIAMRDLSIRGAG 976 Query: 632 EILGIKQSG 640 +LG +Q G Sbjct: 977 NLLGKQQHG 985 >gi|325853962|ref|ZP_08171478.1| transcription-repair coupling factor [Prevotella denticola CRIS 18C-A] gi|325484299|gb|EGC87229.1| transcription-repair coupling factor [Prevotella denticola CRIS 18C-A] Length = 1175 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 134/401 (33%), Positives = 217/401 (54%), Gaps = 17/401 (4%) Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 ++E G + + + ++ + + T Q A +++ QDM M R++ GDVG GKT Sbjct: 580 RREKGFAFSPDSFMQHELEASFLYEDTPDQLKATQELKQDMESARPMDRLVCGDVGFGKT 639 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 VA+ A A Q ++ P +LA QHY+ KK ++ + V+ ++ R+ Sbjct: 640 EVAIRAAFKAAVDNKQVAVLVPTTVLAFQHYQTFKKRLKDMPVRVDYLSRARSARQTRQV 699 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 L +A G+ +I++GTH L S+++ L L+I+DE+ +FGV + KL Q T L M+ Sbjct: 700 LADLAEGKINILVGTHKLIGKSVKWNDLGLLIIDEEQKFGVSTKEKLRQLKTNVDTLTMS 759 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAY 486 ATPIPRTL + +G D+S + P R PI+T I + EVI + + +S + Y Sbjct: 760 ATPIPRTLQFSLMGARDMSIMRTPPPNRYPIQTEIATFSH--EVIADAINFEMSRNGQVY 817 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLL 545 ++ +I SN + + N + ++ +AI HG+M + E ++ F N +L Sbjct: 818 FVNDRI-----SNLQEIA---NLIRKYVPDCRVAIGHGQMKPEELEKIVMGFMNYDYDVL 869 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKN 603 ++TT++E GID+ +A+ III +A FGL+ LHQ+RGRVGR + + C LL P L+ Sbjct: 870 LSTTIVENGIDISNANTIIINDAHRFGLSDLHQMRGRVGRSNKKAFCYLLAPPLAALNTE 929 Query: 604 SYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 + RL L+ D GF +A +DL R G +LG +QSG Sbjct: 930 ARRRLEALETFSDLGSGFNLAMQDLDIRGAGNLLGSEQSGF 970 >gi|315924903|ref|ZP_07921120.1| transcription-repair coupling factor [Pseudoramibacter alactolyticus ATCC 23263] gi|315621802|gb|EFV01766.1| transcription-repair coupling factor [Pseudoramibacter alactolyticus ATCC 23263] Length = 1144 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 129/378 (34%), Positives = 205/378 (54%), Gaps = 16/378 (4%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 P+ T Q I++I DM + M R+L GDVG GKT VAL A AV Q ++ Sbjct: 596 FPYEETDDQLRCIEEIKADMEKPVPMDRLLCGDVGYGKTEVALRAAFKAVMDSKQVALLV 655 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P ILAQQHYE ++ I VE+++ ++ L +A G+ +++GTH L Sbjct: 656 PTTILAQQHYETMRSRFARYPITVEVMSRFRTPKEQKAVLADLAAGRVDVVVGTHRLLSK 715 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 +++ L L+IVDE+ RFGV+ + KL VL ++ATPIPRTL ++ G D+S I Sbjct: 716 DMRFKDLGLLIVDEEQRFGVRAKEKLKSLRENVDVLTLSATPIPRTLHMSMTGIRDMSVI 775 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI--CPQIEEKKESNFRSVVER 506 E PAGR+P++T ++ N + V + + + G + Y++ C + ++ R +V Sbjct: 776 AEPPAGRRPVRTYVMRDNAV-VVGDAIAREIRRGGQVYFVHNCIKDLNERADQVRRMVP- 833 Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 + + HG+M E +M +F + +L+ T ++E G+DV +A+ ++++ Sbjct: 834 --------GARVVTAHGQMPGEALERIMQAFVDKAYDVLVTTAIVESGLDVRNANTMVVD 885 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPPLSKNSYTRLSVLKNTE---DGFLIAE 622 + + GL+QL+QLRGRVGR + C +LY LS + RL +K+ GF +A Sbjct: 886 DGDAMGLSQLYQLRGRVGRSSNQAFCYILYKRRALSDVAQKRLKAIKDFTAFGSGFKVAM 945 Query: 623 EDLKQRKEGEILGIKQSG 640 DL+ R G ILG +QSG Sbjct: 946 RDLEIRGAGNILGAEQSG 963 >gi|162446907|ref|YP_001620039.1| transcription-repair coupling factor [Acholeplasma laidlawii PG-8A] gi|161985014|gb|ABX80663.1| transcription-repair coupling factor (superfamily II helicase) [Acholeplasma laidlawii PG-8A] Length = 1143 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 131/382 (34%), Positives = 205/382 (53%), Gaps = 17/382 (4%) Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 ++ + T Q+ AI + +DM M R++ GDVG GKT VAL A AV Q Sbjct: 589 KDFNYDETIDQQKAIDAVFEDMESSKPMDRLIAGDVGYGKTEVALRAAFKAVVDAKQVAY 648 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 + P +LA+QHY K + V +++ + + +++ LE+IA G ++IGTH L Sbjct: 649 LVPTTVLARQHYLTFKDRFEKYGGSVALLSRYVSKREQKEVLEKIAKGYIDVVIGTHRLL 708 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 D I + L L I+DE+ RFGVQ + K+ + L ++ATPIPRTL + G D+S Sbjct: 709 SDDIVFKDLGLFIIDEEQRFGVQHKEKIKEIKVNVDTLTLSATPIPRTLQMAMYGLKDLS 768 Query: 447 KITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504 I P R P++T ++ I E I+R LS G + +++ E + V Sbjct: 769 MIDTPPLNRYPVQTYVVERQPALIKEAIDR---ELSRGGQVFYLFNNTER-----MEAQV 820 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + L + + I HG+M+ E + F +L++TT+IE G+D+ + + +I Sbjct: 821 LKLQQLVPN--ARITYAHGKMTKNRIEDTLSRFVEKEFDILVSTTIIETGVDIPNTNTLI 878 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619 I +A+H GLAQL+QLRGRVGR + I+ L++ + ++ + RLSV+++ D GF Sbjct: 879 IHDADHLGLAQLYQLRGRVGRSDRIAYAYLMFDGYKDVNDEAKKRLSVIEDFTDLGSGFK 938 Query: 620 IAEEDLKQRKEGEILGIKQSGM 641 IA DL R G+ILG +QSG Sbjct: 939 IALRDLGIRGAGDILGEEQSGF 960 >gi|326316443|ref|YP_004234115.1| transcription-repair coupling factor [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373279|gb|ADX45548.1| transcription-repair coupling factor [Acidovorax avenae subsp. avenae ATCC 19860] Length = 1163 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 152/424 (35%), Positives = 226/424 (53%), Gaps = 29/424 (6%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 ++ + F T Q +AI ++QDM M R++ GDVG GKT VAL A AV G Sbjct: 601 EQFANDFGFEETADQNAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVTGGK 660 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEII---TGNMPQAHRRKALERIAHGQAHI 378 Q +AP +LA+QHY+ + ++++ I E+ +G A A++ I G I Sbjct: 661 QVAFLAPTTLLAEQHYQTLVDRFSKWPVKIAEVSRFRSGKEITA----AIKGIGDGTVDI 716 Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438 ++GTH L +S +++ L L+I+DE+HRFGV+ + ++ Q VL +TATPIPRTL + Sbjct: 717 VVGTHKLLSESTKFHNLGLLIIDEEHRFGVRHKEQMKQLRAEVDVLTLTATPIPRTLGMA 776 Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKE 497 G D+S I P R IKT + N VI E + L G + Y++ ++E Sbjct: 777 LEGLRDLSVIATAPQRRLAIKTFV--RNEGTGVIREAVLRELKRGGQCYFLHNEVE---- 830 Query: 498 SNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556 ++ R L E + IA+ HG+M + + E VM F +L+ +T+IE GID Sbjct: 831 ----TIENRRQKLEEILPEARIAVAHGQMPERELEKVMRDFVAQRYNILLCSTIIETGID 886 Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNT 614 V A+ II+ A+ FGLAQLHQLRGRVGR + L+ L+K + RL ++ Sbjct: 887 VPTANTIIMSRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDVDGLTKQAAQRLDAIQQM 946 Query: 615 ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671 E+ GF +A DL+ R GE+LG QSG L +L++ +L A K K ++P Sbjct: 947 EELGSGFYLAMHDLEIRGAGEVLGENQSG--NMLEVGFQLYNEMLSEAVKSLK--AGKEP 1002 Query: 672 DLTS 675 DL S Sbjct: 1003 DLLS 1006 >gi|213389870|gb|ACJ45997.1| putative ATP-dependent DNA helicase [Palm lethal yellowing phytoplasma] Length = 623 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 150/465 (32%), Positives = 245/465 (52%), Gaps = 26/465 (5%) Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243 ++ E + + L+K + S +AF +H P+ + + A R ++E L + Sbjct: 156 IIKENLNNNFLKKYNLISRKKAFENLHIPQNKQSL---NQALIRFKFEEALKINKKWMEE 212 Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303 + +I + N + K KI++ I F TK+Q+ I DI D +++ R++QGDVG Sbjct: 213 KHHLISKIPLIFNNKEKFINKIIKKITFELTKNQKEIIDDIFDDFQKQHYTQRLIQGDVG 272 Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQA 362 SGKT+++ I+ A + Q V+MAP IL++QHY K + + + T N+ Sbjct: 273 SGKTIISFISAIAVIAKKKQVVMMAPTEILSKQHYSNFKNFFPEIKSFCLSSKTKNL--- 329 Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422 +K + I II GTH L ++ L L+I+DE H+FG + + K+T K Sbjct: 330 --KKIKQEIQKNSIQIIFGTHIL--SNLDIPNLGLIIIDETHKFGTEIKKKITAKNIPSD 385 Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID--EVIERLKVVLS 480 +L +TATPIP+TL LG + S + EKP IK I +ID E+I L Sbjct: 386 ILYLTATPIPKTLASIYLGFLSTSLLIEKPN----IKQSKIITQKIDFNEIINILNKNQY 441 Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNS-LHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 + ++ Y + P I++ K+ +E+ S L + ++ +HG+ ++E +M +F N Sbjct: 442 KKEQTYIVVPAIKDSKKI---YNIEKITSFLENNKIKNLYSLHGKKKFEEQEKIMYNFTN 498 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 +LIAT++IEVGID+ + + III AE+FGL+QLHQLRGR+GR + + C + Sbjct: 499 NNKGILIATSIIEVGIDIENVTTIIILGAEYFGLSQLHQLRGRIGRNNKENYCFI----- 553 Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644 +S+ R + + +GF ++E DLK R G L +QSG K+ Sbjct: 554 VSEKDNERFKIFQKENNGFKLSEFDLKIRGPGSFLRKEQSGFLKY 598 >gi|262382158|ref|ZP_06075296.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262297335|gb|EEY85265.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 1127 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 136/407 (33%), Positives = 216/407 (53%), Gaps = 13/407 (3%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+L+ + K+E G + + ++ + + T Q A ++ DM M R++ Sbjct: 530 LILLYSKRKQETGFAYTPDSFMQHELEASFIYEDTPDQMKATAEVKADMESTRPMDRLIC 589 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LA QHY+ + ++ ++ I+ Sbjct: 590 GDVGFGKTEVAIRAAFKAVSDNKQVAVLVPTTVLAFQHYQTFCERLKDFPCKIDYISRAR 649 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A + L+ + G+ +I+IGTH + +++ L L+I+DE+ +FGV + KL Q Sbjct: 650 TAAQIKATLKELKEGEVNILIGTHRIVGKDVRFKDLGLLIIDEEQKFGVSVKEKLRQLKV 709 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 L MTATPIPRTL + +G D+S IT P R P++T + N D + E + + Sbjct: 710 NVDTLTMTATPIPRTLQFSLMGARDLSSITTPPPNRYPVQTEVERFNP-DIIREAINFEM 768 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 S + ++I +I+ E ++V R E + +A+ HG+M E ++ F N Sbjct: 769 SRNGQVFFINNRIQNIYE--MEALVRR-----EVPDARVAVGHGQMEPEKLEKIILDFVN 821 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP- 598 +LIAT+++E GIDV +A+ III NA+ FGL+ LHQLRGRVGR + C LL P Sbjct: 822 YEYDVLIATSIVESGIDVPNANTIIINNAQQFGLSDLHQLRGRVGRSNRKAFCYLLSPPL 881 Query: 599 -PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 L++ + RL ++N + G IA +DL R G +LG +QSG Sbjct: 882 TSLTQEARRRLQAIENFSELGSGIHIAMQDLDIRGAGNMLGAEQSGF 928 >gi|229829772|ref|ZP_04455841.1| hypothetical protein GCWU000342_01869 [Shuttleworthia satelles DSM 14600] gi|229791761|gb|EEP27875.1| hypothetical protein GCWU000342_01869 [Shuttleworthia satelles DSM 14600] Length = 1185 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 132/377 (35%), Positives = 207/377 (54%), Gaps = 15/377 (3%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q AI+ + +DM M R++ GDVG GKT +AL A A + G Q V + P Sbjct: 631 PYEETEGQLEAIEAVKKDMESPKIMDRLICGDVGFGKTEIALRAAFKAAQEGKQVVYLVP 690 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHY+ + I V ++ + + + + +A G+ I+IGTH Sbjct: 691 TTILAQQHYDTFVQRMAPYPIKVGLLCRFRNKTQQAQTVSELASGRVDIVIGTHRALSRD 750 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGV+ + K+ Q VL ++ATPIPRTL ++ +G D+S + Sbjct: 751 VVFRDLGLLIIDEEQRFGVRHKEKIKQMKKNVDVLSLSATPIPRTLHMSLVGIRDMSILD 810 Query: 450 EKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 E P R PI+T + N DE+I E + ++ G + Y++ ++ + + R Sbjct: 811 EAPMERTPIQTFVFEHN--DEMIREAVLREMARGGQIYYVFNRV-----AQIADMTARLQ 863 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 L + +A HGRMS E++M F +G LL++TT+IE+G+D+ + + III++A Sbjct: 864 KLLPE--AHVAYAHGRMSQTRLENIMVDFIDGEIDLLVSTTIIEIGLDISNVNTIIIDDA 921 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEE 623 ++ GL+QL+QLRGRVGR + +Y L + + RL +K D GF IA Sbjct: 922 DNMGLSQLYQLRGRVGRSNRTAYAFFMYRRGKLLKEVAEKRLLAIKEFSDLGSGFKIAMR 981 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R G +LG QSG Sbjct: 982 DLEIRGAGNVLGESQSG 998 >gi|218130501|ref|ZP_03459305.1| hypothetical protein BACEGG_02090 [Bacteroides eggerthii DSM 20697] gi|317474007|ref|ZP_07933286.1| transcription-repair coupling factor [Bacteroides eggerthii 1_2_48FAA] gi|217987380|gb|EEC53710.1| hypothetical protein BACEGG_02090 [Bacteroides eggerthii DSM 20697] gi|316909849|gb|EFV31524.1| transcription-repair coupling factor [Bacteroides eggerthii 1_2_48FAA] Length = 1128 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 138/409 (33%), Positives = 219/409 (53%), Gaps = 17/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + Q ++E G + + + +++ + + T Q A D+ DM M R++ Sbjct: 531 LIKLYSQRREEKGFQYSPDSFLQRELEASFIYEDTPDQSKATADVKADMESTRPMDRLVC 590 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LA QH++ K+ + VE ++ Sbjct: 591 GDVGFGKTEVAVRAAFKAVADNKQVAVLVPTTVLAYQHFQTFKERLKGLPCRVEYLSRAR 650 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A + ++ +A G+ +I+IGTH + +++ L L+I+DE+ +FGV + KL Q Sbjct: 651 TAAQAKAVVKGLAGGEVNILIGTHRILGKDVKFKDLGLLIIDEEQKFGVSVKEKLRQLKV 710 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478 L MTATPIPRTL + +G D+S I P R PI+T + N DE+I + + Sbjct: 711 NVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFN--DEIITDAINFE 768 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 +S + +++ +I E ++++ER I I HG+M + E ++ F Sbjct: 769 MSRNGQVFFVNNRISNLVE--LKAMIERNIP-----DCRICIGHGQMEPAELEKIILDFV 821 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 N +L+ATT+IE GID+ +A+ III A++FGL+ LHQ+RGRVGR + + C LL P Sbjct: 822 NYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-AP 880 Query: 599 PLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 PLS + RL ++N D G IA +DL R G +LG +QSG Sbjct: 881 PLSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 929 >gi|300768957|ref|ZP_07078848.1| transcription-repair coupling factor [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493478|gb|EFK28655.1| transcription-repair coupling factor [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 1175 Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 140/429 (32%), Positives = 225/429 (52%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ A E +A ++ L +++ +K P + + P+ T Q Sbjct: 568 EWTKAKRKVAAKIEDIADELVDLYAKREAEKGYAFP--PDDSYQDDFDNDFPYPETPDQI 625 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I +I DM + M R+L GDVG GKT VAL A A+EAG Q + P ILAQQHY Sbjct: 626 RSINEIKHDMERPKPMDRLLVGDVGYGKTEVALRAAFKAIEAGKQVAFLVPTTILAQQHY 685 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + + I V +++ ++ ++++ G+ I++GTH L + + L L+ Sbjct: 686 ETMLNRFEGYPINVGMLSRFRTTKEMKETVQQLKSGEIDIVVGTHRLLSKDVAFADLGLL 745 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 746 IIDEEQRFGVKHKERLKALKASVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPTNRYPI 805 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T ++ N I E IER + + +++ ++ + VV + L + Sbjct: 806 QTYVMEQNFGVIKEGIER---EMQRNGQVFYLHNRVH-----DIDKVVAQIKDLVPD--A 855 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 ++A I G+M + E ++ F G +L+ TT+IE G+D+ + + + +ENA+ GL+QL Sbjct: 856 AVAHIDGQMPESQLEGILYDFIRGEYDVLVTTTIIETGVDIPNVNTLFVENADRMGLSQL 915 Query: 577 HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGR+GR ++ Y + L++ RL +K+ TE GF IA DL R G Sbjct: 916 YQLRGRIGRSSRVAYAYFTYQQNKVLTEVGEKRLQAIKDFTELGSGFKIAMRDLSIRGAG 975 Query: 632 EILGIKQSG 640 +LG +Q G Sbjct: 976 NLLGKQQHG 984 >gi|159044110|ref|YP_001532904.1| transcription repair coupling factor [Dinoroseobacter shibae DFL 12] gi|157911870|gb|ABV93303.1| transcription repair coupling factor [Dinoroseobacter shibae DFL 12] Length = 1160 Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 139/399 (34%), Positives = 225/399 (56%), Gaps = 23/399 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P++ T Q SAI+D++ D++ M R++ GDVG GKT VA+ A A +G Q ++AP Sbjct: 604 PYTETDDQLSAIEDVVHDLAAGTPMDRLICGDVGFGKTEVAMRAAFIAALSGVQVAVIAP 663 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHY+ + + V ++ +P + +A G I++GTHAL Sbjct: 664 TTLLARQHYKSFADRFRGFPLEVRPLSRFVPAKAAADTRKGLAAGSVDIVVGTHALLAKG 723 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 ++++ L L+I+DE+ RFGV + +L + + HVL +TATPIPRTL L+ G D+S I Sbjct: 724 VRFHNLGLLIIDEEQRFGVGHKERLKELRSDVHVLTLTATPIPRTLQLSLSGVRDLSIIG 783 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R I+T ++ D V R + +L E G +++++ P+I++ E +E Sbjct: 784 TPPVDRLSIRTY---VSEFDPVTLR-EALLREHYRGGQSFFVVPRIKDIPE------IEA 833 Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 F L + S + HG+M+ + + M++F +G +L+ATT++E G+D+ A+ +II Sbjct: 834 F--LRDQVPEVSFVVAHGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMII 891 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 A+ FGL+QL+Q+RGRVGR + + L P L+ + RL VL + + GF + Sbjct: 892 HRADMFGLSQLYQIRGRVGRAKTRAYAYLTTKPRMKLTPAAEKRLRVLGSLDSLGAGFTL 951 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 A +DL R G +LG QSG +F EL+ S+LE A Sbjct: 952 ASQDLDIRGAGNLLGEAQSG--QFREVGFELYQSMLEEA 988 >gi|301310728|ref|ZP_07216667.1| transcription-repair coupling factor [Bacteroides sp. 20_3] gi|300832302|gb|EFK62933.1| transcription-repair coupling factor [Bacteroides sp. 20_3] Length = 1120 Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 136/407 (33%), Positives = 216/407 (53%), Gaps = 13/407 (3%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+L+ + K+E G + + ++ + + T Q A ++ DM M R++ Sbjct: 523 LILLYSKRKQETGFAYTPDSFMQHELEASFIYEDTPDQMKATAEVKADMESTRPMDRLIC 582 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LA QHY+ + ++ ++ I+ Sbjct: 583 GDVGFGKTEVAIRAAFKAVSDNKQVAVLVPTTVLAFQHYQTFCERLKDFPCKIDYISRAR 642 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A + L+ + G+ +I+IGTH + +++ L L+I+DE+ +FGV + KL Q Sbjct: 643 TAAQIKATLKELKEGEVNILIGTHRIVGKDVRFKDLGLLIIDEEQKFGVSVKEKLRQLKV 702 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 L MTATPIPRTL + +G D+S IT P R P++T + N D + E + + Sbjct: 703 NVDTLTMTATPIPRTLQFSLMGARDLSSITTPPPNRYPVQTEVERFNP-DIIREAINFEM 761 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 S + ++I +I+ E ++V R E + +A+ HG+M E ++ F N Sbjct: 762 SRNGQVFFINNRIQNIYE--MEALVRR-----EVPDARVAVGHGQMEPEKLEKIILDFVN 814 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP- 598 +LIAT+++E GIDV +A+ III NA+ FGL+ LHQLRGRVGR + C LL P Sbjct: 815 YEYDVLIATSIVESGIDVPNANTIIINNAQQFGLSDLHQLRGRVGRSNRKAFCYLLSPPL 874 Query: 599 -PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 L++ + RL ++N + G IA +DL R G +LG +QSG Sbjct: 875 TSLTQEARRRLQAIENFSELGSGIHIAMQDLDIRGAGNMLGAEQSGF 921 >gi|298375260|ref|ZP_06985217.1| transcription-repair coupling factor [Bacteroides sp. 3_1_19] gi|298267760|gb|EFI09416.1| transcription-repair coupling factor [Bacteroides sp. 3_1_19] Length = 1120 Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 136/407 (33%), Positives = 216/407 (53%), Gaps = 13/407 (3%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+L+ + K+E G + + ++ + + T Q A ++ DM M R++ Sbjct: 523 LILLYSKRKQETGFAYTPDSFMQHELEASFIYEDTPDQMKATAEVKADMESTRPMDRLIC 582 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LA QHY+ + ++ ++ I+ Sbjct: 583 GDVGFGKTEVAIRAAFKAVSDNKQVAVLVPTTVLAFQHYQTFCERLKDFPCKIDYISRAR 642 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A + L+ + G+ +I+IGTH + +++ L L+I+DE+ +FGV + KL Q Sbjct: 643 TAAQIKATLKELKEGEVNILIGTHRIVGKDVRFKDLGLLIIDEEQKFGVSVKEKLRQLKV 702 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 L MTATPIPRTL + +G D+S IT P R P++T + N D + E + + Sbjct: 703 NVDTLTMTATPIPRTLQFSLMGARDLSSITTPPPNRYPVQTEVERFNP-DIIREAINFEM 761 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 S + ++I +I+ E ++V R E + +A+ HG+M E ++ F N Sbjct: 762 SRNGQVFFINNRIQNIYE--MEALVRR-----EVPDARVAVGHGQMEPEKLEKIILDFVN 814 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP- 598 +LIAT+++E GIDV +A+ III NA+ FGL+ LHQLRGRVGR + C LL P Sbjct: 815 YEYDVLIATSIVESGIDVPNANTIIINNAQQFGLSDLHQLRGRVGRSNRKAFCYLLSPPL 874 Query: 599 -PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 L++ + RL ++N + G IA +DL R G +LG +QSG Sbjct: 875 TSLTQEARRRLQAIENFSELGSGIHIAMQDLDIRGAGNMLGAEQSGF 921 >gi|293400065|ref|ZP_06644211.1| transcription-repair coupling factor [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306465|gb|EFE47708.1| transcription-repair coupling factor [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 1149 Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 135/430 (31%), Positives = 229/430 (53%), Gaps = 21/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW ++ A LA ++ L + + IG + + ++ + + T Q Sbjct: 551 EWEKTKKKVSAKIAELADRLIHLYANRD--EHIGHAFAKDTAMQKEFEDDFDYELTIDQA 608 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 A+K+I DM M R+L GDVG GKT VA A AV Q + P IL+ QH+ Sbjct: 609 KAVKEIKSDMESSKPMDRLLCGDVGFGKTEVAARAAFKAVSDNKQVAFLCPTTILSLQHF 668 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + +N + + ++ + ++++ ++ + G I+IGTH L IQ+ L L+ Sbjct: 669 KTFQHRFRNFPVNIAVVNRFIKPQNQKQIIKDLKEGNLDILIGTHRLLSKDIQFKDLGLL 728 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 ++DE+ RFGV+ + K+ + + VL ++ATPIPRTL ++ +G +S++ P R P+ Sbjct: 729 VIDEEQRFGVEHKEKIKELKNSVDVLSLSATPIPRTLQMSLIGIRSLSQLETPPLNRMPV 788 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T +I N I E+I+R L+ + +++ +N + + L E Sbjct: 789 QTYVIEKNFSMIKEIIQR---ELARNGQVFYLY--------NNVKEIYNVARKLREALPD 837 Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 I + HG+MS D E VM F + ++L+ TT+IE GID+ +A+ I+IE+A+HFGL+Q Sbjct: 838 VEIGVAHGQMSRDDIEDVMMQFTDNQYQVLVCTTIIETGIDIPNANTILIEDADHFGLSQ 897 Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKE 630 L+Q++GRVGR + ++ L+Y P LS+ + RL +K G+ IA DL R Sbjct: 898 LYQIKGRVGRSDRLAYAYLMYSPQRQLSEVAMKRLKSIKEFTQLGSGYKIAMRDLTIRGA 957 Query: 631 GEILGIKQSG 640 G++LG +Q+G Sbjct: 958 GDMLGPQQAG 967 >gi|329769841|ref|ZP_08261241.1| hypothetical protein HMPREF0433_01005 [Gemella sanguinis M325] gi|328838017|gb|EGF87639.1| hypothetical protein HMPREF0433_01005 [Gemella sanguinis M325] Length = 653 Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 143/408 (35%), Positives = 232/408 (56%), Gaps = 19/408 (4%) Query: 242 LMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L++ K+E+ G +++G + + + PF PT Q A ++I +DM ++ M R+L Sbjct: 44 LIKLYIKRELSSGYAYSLDGSMQYEFEADFPFVPTDDQLKATEEIKRDMEKERPMDRLLC 103 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358 GDVG GKT VA+ AV G Q ++ P +LA+QHY+ F+ ++ +N I +E+++ Sbjct: 104 GDVGFGKTEVAMRVAFKAVMDGKQVAVLVPTTLLAEQHYDNFVNRF-ENFPINIEVVSRF 162 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 +R+ G+ I+IGTH L D Y L L+I+DE+ RFGV+ + K+ Sbjct: 163 NTAKDITNICKRLKEGKIDIMIGTHKLLNDKFVYNDLGLLIIDEEQRFGVKHKEKIKHLK 222 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 VL ++ATPIPRTL ++ +G D+S I P R+PI+T + N + + E + Sbjct: 223 NTVDVLTLSATPIPRTLHMSLIGIRDLSVIETPPKERQPIQTFVTSQNNM-VIKEAVMNE 281 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 +S G + +++ ++E S+ E++ L + +IA HGRM+ + E++M Sbjct: 282 VSRGGQVFYVYNKVE--------SIDEKYLELKKLLPDVNIAYAHGRMTQRELENIMTDV 333 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 + +LI TT+IE GID+ + + +I+E+A+ FGL+QL+QLRGRVGR + L+Y Sbjct: 334 IDRKYDVLITTTIIETGIDISNVNTLIVEDADKFGLSQLYQLRGRVGRSSREAYAYLMYK 393 Query: 598 P--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640 P L++NS RLS +KN GF IA +DL R G++LG +Q G Sbjct: 394 PFKSLTENSEKRLSAIKNFTTLGSGFKIAMQDLSIRGAGDVLGGRQHG 441 >gi|323490992|ref|ZP_08096186.1| transcription-repair coupling factor [Planococcus donghaensis MPA1U2] gi|323395348|gb|EGA88200.1| transcription-repair coupling factor [Planococcus donghaensis MPA1U2] Length = 1177 Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 132/396 (33%), Positives = 216/396 (54%), Gaps = 17/396 (4%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G + E + ++ P+ T Q +I ++ +DM + M R++ GDVG GKT VA+ Sbjct: 603 GFAFSEEQDMQRQFEAEFPYEETTDQLRSINEVKRDMENERPMDRLICGDVGYGKTEVAI 662 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A AV G Q + P ILAQQH+E + + + I V +++ + + + ++ + Sbjct: 663 RAAFKAVLDGKQVAFLVPTTILAQQHFETMSERFKEYPITVGLMSRFRSKKQQTETVKGL 722 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 +G I++GTH + + Y L L+I+DE+ RFGV + K+ Q T VL +TATPI Sbjct: 723 KNGSVDIVVGTHRILSKDMHYKDLGLLIIDEEQRFGVTHKEKIKQMKTNVDVLTLTATPI 782 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWIC 489 PRTL ++ +G D+S I PA R P+++ ++ N + E IER ++ G + +++ Sbjct: 783 PRTLHMSMIGVRDLSVIETPPANRFPVQSYVMEHNGALVREAIER---EMARGGQVFYLY 839 Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549 +++ + VE L + + HG+MS+ + ESV+ SF +G +L+ TT Sbjct: 840 NRVD-----DMTRKVEEIQQLVPE--ARVGYAHGQMSETELESVILSFLDGDYDVLVTTT 892 Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTR 607 +IE GID+ + + +I+ NA+ GL+QL+QLRGRVGR ++ +Y L+ + R Sbjct: 893 IIETGIDIPNVNTLIVYNADRMGLSQLYQLRGRVGRSSRVAYAYFMYQRDKVLTDVAEKR 952 Query: 608 LSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640 L +K TE GF IA DL R G +LG +Q G Sbjct: 953 LMAIKEFTELGSGFKIAMRDLTIRGAGNLLGSQQHG 988 >gi|187928984|ref|YP_001899471.1| transcription-repair coupling factor [Ralstonia pickettii 12J] gi|187725874|gb|ACD27039.1| transcription-repair coupling factor [Ralstonia pickettii 12J] Length = 1143 Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 148/431 (34%), Positives = 220/431 (51%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W R+ A ++ L R+ ++ P+ E + F T Q Sbjct: 550 QWEKAKRKAAQQIRDTAAELLNLYARRALRQGFAFPLTPEDYAT--FAESFGFEETPDQA 607 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q I+AP +LA+QHY Sbjct: 608 AAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAILAPTTLLAEQHY 667 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + + + I+ + A+E I G I+IGTH L +++ +L LV Sbjct: 668 QTLVDRFADWPVRIAEISRFKNKKEIDAAIEAINAGTIDIVIGTHKLLSPDVKFDRLGLV 727 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+HRFGV+Q+ L VL +TATPIPRTL + G D S I P R I Sbjct: 728 IIDEEHRFGVRQKETLKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 787 Query: 459 KTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 KT + R ++ + R ++ L G + Y++ ++E E K + ++ Sbjct: 788 KTF---LRREEDGVLREAILRELKRGGQVYFLHNEVETIENKRAKLEELIPE-------- 836 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + + + HG+M + + E VM F +L+ TT+IE GIDV A+ I+I A+ FGLA Sbjct: 837 -ARVVVAHGQMHERELERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRADKFGLA 895 Query: 575 QLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629 QLHQLRGRVGR + LL H L+K + RL ++ E+ GF +A DL+ R Sbjct: 896 QLHQLRGRVGRSHHQAYAYLLVHDVDGLTKQAQRRLEAIQQMEELGAGFYLAMHDLEIRG 955 Query: 630 EGEILGIKQSG 640 GE+LG KQSG Sbjct: 956 AGEVLGDKQSG 966 >gi|241663171|ref|YP_002981531.1| transcription-repair coupling factor [Ralstonia pickettii 12D] gi|240865198|gb|ACS62859.1| transcription-repair coupling factor [Ralstonia pickettii 12D] Length = 1143 Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 148/431 (34%), Positives = 220/431 (51%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W R+ A ++ L R+ ++ P+ E + F T Q Sbjct: 550 QWEKAKRKAAQQIRDTAAELLNLYARRALRQGFAFPLTPEDYAT--FAESFGFEETPDQA 607 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q I+AP +LA+QHY Sbjct: 608 AAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAILAPTTLLAEQHY 667 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + + + I+ + A+E I G I+IGTH L +++ +L LV Sbjct: 668 QTLVDRFADWPVRIAEISRFKNKKEIDAAIEAINAGTIDIVIGTHKLLSPDVKFDRLGLV 727 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+HRFGV+Q+ L VL +TATPIPRTL + G D S I P R I Sbjct: 728 IIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 787 Query: 459 KTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 KT + R ++ + R ++ L G + Y++ ++E E K + ++ Sbjct: 788 KTF---LRREEDGVLREAILRELKRGGQVYFLHNEVETIENKRAKLEELIPE-------- 836 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + + + HG+M + + E VM F +L+ TT+IE GIDV A+ I+I A+ FGLA Sbjct: 837 -ARVVVAHGQMHERELERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRADKFGLA 895 Query: 575 QLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629 QLHQLRGRVGR + LL H L+K + RL ++ E+ GF +A DL+ R Sbjct: 896 QLHQLRGRVGRSHHQAYAYLLVHDVDGLTKQAQRRLEAIQQMEELGAGFYLAMHDLEIRG 955 Query: 630 EGEILGIKQSG 640 GE+LG KQSG Sbjct: 956 AGEVLGDKQSG 966 >gi|56479184|ref|YP_160773.1| transcription-repair coupling protein Mfd [Aromatoleum aromaticum EbN1] gi|56315227|emb|CAI09872.1| Transcription-repair coupling protein Mfd [Aromatoleum aromaticum EbN1] Length = 1157 Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 141/377 (37%), Positives = 204/377 (54%), Gaps = 17/377 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q++AI ++ DM M R++ GDVG GKT VAL A AV G Q V++ P Sbjct: 613 FETTPDQQAAIDAVVTDMKSGQPMDRLVCGDVGFGKTEVALRAAFVAVADGKQVVVLTPT 672 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA+QHY+ + I + ++ + +L+++A G+ IIIGTH L Q + Sbjct: 673 TLLAEQHYQTFSDRFADFAIRIAELSRFKSAKEQTDSLKQLAEGKVDIIIGTHRLLQKDV 732 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ +L LVI+DE+HRFGV+Q+ L + +L +TATPIPRTL L G + S I Sbjct: 733 KFKRLGLVIIDEEHRFGVRQKEMLKTLRSEIDILTLTATPIPRTLGLALEGLREFSVIAT 792 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P+ R IKT ++R + I R V+ G + Y++ +++ +V + Sbjct: 793 APSRRLAIKTF---VHRHSKGIIREAVLREFKRGGQVYFLHNEVD-----TIDNVRDELA 844 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 L + I I HG++ + + E VM +F LL+ TT+IE GID+ A+ III A Sbjct: 845 ELLPE--ARIVIGHGQLPERELERVMRTFTQQRANLLLCTTIIETGIDIPTANTIIINRA 902 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GFLIAEE 623 + FGLAQLHQLRGRVGR + LL H S + RL + ED GF +A Sbjct: 903 DRFGLAQLHQLRGRVGRSHHQAYAYLLTDAHAKPSALAQKRLEAITMMEDLGSGFYLAMH 962 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R GE+LG QSG Sbjct: 963 DLEIRGAGEVLGENQSG 979 >gi|312144318|ref|YP_003995764.1| transcription-repair coupling factor [Halanaerobium sp. 'sapolanicus'] gi|311904969|gb|ADQ15410.1| transcription-repair coupling factor [Halanaerobium sp. 'sapolanicus'] Length = 1164 Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 135/378 (35%), Positives = 206/378 (54%), Gaps = 17/378 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF T Q+ AIK++ DM + M R+L GDVG GKT VA+ A A G Q ++ P Sbjct: 618 PFHETPDQQKAIKEVKSDMESEQPMDRLLCGDVGYGKTEVAIRAAFKAALDGKQTAVLVP 677 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQH+ + ++ I + +++ +A +RK L+ + G+ I+IGTH L Sbjct: 678 TTILAQQHFNTFEDRIEDFPIRISMLSRFKTKAEQRKTLKELIKGEVDIVIGTHRLLSKD 737 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+I+DE+ RFGV + KL VL +TATPIPRTL + +G D+S I Sbjct: 738 VIFDDLGLLIIDEEQRFGVTHKEKLKDIKRNVDVLTLTATPIPRTLHMALVGVRDMSLIE 797 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERF 507 P R PI+T I N + + ++ L+ + Y++ ++E EK + +V Sbjct: 798 TPPENRYPIRTFIKEKNH-ELIAGAVRRELAREGQIYFVHNRVEDIEKIAGKLQKIVPE- 855 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + IA+ HG+M + E +M +F + +L+ TT+IE G+D+ + + III + Sbjct: 856 --------AKIAVAHGQMKEKRLEKIMYNFYHHKFDILVCTTIIETGLDIPNVNTIIINH 907 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAE 622 A+ GL+QL+QLRGRVGR I+ LLY L++ + RL +K GF IA Sbjct: 908 ADKMGLSQLYQLRGRVGRTNRIAYAYLLYKRDRILAEVAEKRLEAIKEFSSLGSGFKIAM 967 Query: 623 EDLKQRKEGEILGIKQSG 640 DL+ R G +LG +QSG Sbjct: 968 RDLEIRGAGNLLGPEQSG 985 >gi|326202452|ref|ZP_08192321.1| transcription-repair coupling factor [Clostridium papyrosolvens DSM 2782] gi|325987570|gb|EGD48397.1| transcription-repair coupling factor [Clostridium papyrosolvens DSM 2782] Length = 1174 Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 130/378 (34%), Positives = 214/378 (56%), Gaps = 17/378 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q I +I +DM + M R+L GDVG GKT VA+ A+ +V G Q +AP Sbjct: 625 PYQETDDQLKCIDEIKKDMESERLMDRLLCGDVGYGKTEVAIRAVFKSVMDGKQVAYLAP 684 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQ YE KK + + V++++ A ++K ++ + G I+IGTH L Q Sbjct: 685 TTILAQQLYENFKKRMSDFPVTVDVMSRFRTPAEQKKIVKSVKAGNTDILIGTHRLLQKD 744 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ L L++VDE+ RFGV + KL VL +TATPIPRTL ++ +G DIS + Sbjct: 745 IEFKDLGLLVVDEEQRFGVTHKEKLKTLKPNVDVLTLTATPIPRTLHMSLVGIRDISVLE 804 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERF 507 + P R P++T ++ N ++ + + + ++ + +++ ++ + K R+++ Sbjct: 805 DPPEERYPVQTYVMEYN-MELIRDGIIREMARNGQVFYMYNRVRGIDLKAQEIRTMIPE- 862 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + +A+ HG+M++ + E VM F NG +L+ TT+IE G+D+ + + I++E+ Sbjct: 863 --------ARVAVAHGQMNEKELEDVMYGFINGEYDVLVCTTIIESGLDMPNVNTIVVED 914 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622 A+ GL+QL+Q+RGRVGR ++ + Y LS+ + RL +K TE GF IA Sbjct: 915 ADRMGLSQLYQIRGRVGRSNRLAYAYITYKKDKVLSEVAEKRLQAIKEFTEFGSGFRIAM 974 Query: 623 EDLKQRKEGEILGIKQSG 640 DL+ R G +LG +Q G Sbjct: 975 RDLEIRGAGNLLGPEQHG 992 >gi|167758784|ref|ZP_02430911.1| hypothetical protein CLOSCI_01126 [Clostridium scindens ATCC 35704] gi|167663524|gb|EDS07654.1| hypothetical protein CLOSCI_01126 [Clostridium scindens ATCC 35704] Length = 1114 Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 132/370 (35%), Positives = 205/370 (55%), Gaps = 21/370 (5%) Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 AI+ + QDM M R++ GDVG GKT +A+ A AV+ Q V + P ILAQQHY Sbjct: 572 AIEAVKQDMMSHKIMDRLICGDVGYGKTEIAIRAAFKAVQEDKQVVYLVPTTILAQQHYN 631 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 + ++ + V+++ A ++K +E G I+IGTH + D +++ L L+I Sbjct: 632 TFAQRMKDFPVRVDLMCRFRTPAQQKKTIEDTKKGLVDIVIGTHRVLSDDLKFKDLGLLI 691 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 +DE+ RFGVQ + K+ + VL +TATPIPRTL ++ +G D+S + E P R PI+ Sbjct: 692 IDEEQRFGVQHKEKIKKLKENVDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPNDRMPIQ 751 Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKA--YWICPQIEEKKESNFRSVVERFNSLHEHFT 515 T ++ N + E IER G++ Y++ ++E+ E + L T Sbjct: 752 TYVMEYNDEMVREAIER-----ESGRQGQVYYVYNRVEDIAE-----ITGHIQKLVPDVT 801 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 A HG+M + E +M F NG +L++TT+IE G+D+ + + +II +A+H GL+Q Sbjct: 802 VEYA--HGQMKEHQLERIMYDFINGEIDVLVSTTIIETGLDISNVNTMIIHDADHLGLSQ 859 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630 L+QLRGRVGR ++ LLY L + + RL+ ++ D GF IA DL+ R Sbjct: 860 LYQLRGRVGRSNRMAYAFLLYRRDKLLREVAEKRLAAIREFTDLGSGFKIAMRDLEIRGA 919 Query: 631 GEILGIKQSG 640 G +LG +Q G Sbjct: 920 GNLLGAEQHG 929 >gi|34496601|ref|NP_900816.1| transcription-repair coupling factor [Chromobacterium violaceum ATCC 12472] gi|34102455|gb|AAQ58821.1| transcription-repair coupling factor [Chromobacterium violaceum ATCC 12472] Length = 1130 Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 131/375 (34%), Positives = 205/375 (54%), Gaps = 15/375 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q +AI+ ++QDM M R++ GDVG GKT VAL A AV G Q ++ P Sbjct: 588 FEETPDQATAIEAVIQDMCSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLVPT 647 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA+QH++ + + + ++ + AL +A G I+IGTH L Q + Sbjct: 648 TLLAEQHFQNFSDRFADWPVRIAELSRFRSGKETKAALAGLADGGVDIVIGTHKLVQPDV 707 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + L LVI+DE+HRFGV+Q+ +L + VL +TATPIPRTL + G D S I Sbjct: 708 AFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDVLTLTATPIPRTLSMALEGLRDFSAIAT 767 Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P+ R +KT + P++ + E + R L G + +++ +++ ++ E+ Sbjct: 768 APSRRLAVKTFVSPLSNGVVREAVLR---ELKRGGQVFFLHNEVD-----TIENMREKLA 819 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 L + I + HG++ + + E VM F LL+ +T+IE GID+ +A+ I+I A Sbjct: 820 ELIPE--ARIGVAHGQLRERELEQVMRDFLQQRFNLLLCSTIIETGIDIPNANTILINRA 877 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDL 625 + FGLAQLHQLRGRVGR + LL +++++ RL ++ + + GF +A DL Sbjct: 878 DKFGLAQLHQLRGRVGRSHHQAYAYLLTPDGMTRDAQKRLEAIQLSGELGAGFYLAMHDL 937 Query: 626 KQRKEGEILGIKQSG 640 + R GE+LG QSG Sbjct: 938 EIRGAGEVLGEGQSG 952 >gi|256839562|ref|ZP_05545071.1| transcription-repair coupling factor [Parabacteroides sp. D13] gi|256738492|gb|EEU51817.1| transcription-repair coupling factor [Parabacteroides sp. D13] Length = 1145 Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 136/407 (33%), Positives = 216/407 (53%), Gaps = 13/407 (3%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+L+ + K+E G + + ++ + + T Q A ++ DM M R++ Sbjct: 548 LILLYSKRKQETGFAYTPDSFMQHELEASFIYEDTPDQMKATAEVKADMESTRPMDRLIC 607 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LA QHY+ + ++ ++ I+ Sbjct: 608 GDVGFGKTEVAIRAAFKAVSDNKQVAVLVPTTVLAFQHYQTFCERLKDFPCKIDYISRAR 667 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A + L+ + G+ +I+IGTH + +++ L L+I+DE+ +FGV + KL Q Sbjct: 668 TAAQIKATLKELKEGEVNILIGTHRIVGKDVRFKDLGLLIIDEEQKFGVSVKEKLRQLKV 727 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 L MTATPIPRTL + +G D+S IT P R P++T + N D + E + + Sbjct: 728 NVDTLTMTATPIPRTLQFSLMGARDLSSITTPPPNRYPVQTEVERFNP-DIIREAINFEM 786 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 S + ++I +I+ E ++V R E + +A+ HG+M E ++ F N Sbjct: 787 SRNGQVFFINNRIQNIYE--MEALVRR-----EVPDARVAVGHGQMEPEKLEKIILDFVN 839 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP- 598 +LIAT+++E GIDV +A+ III NA+ FGL+ LHQLRGRVGR + C LL P Sbjct: 840 YEYDVLIATSIVESGIDVPNANTIIINNAQQFGLSDLHQLRGRVGRSNRKAFCYLLSPPL 899 Query: 599 -PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 L++ + RL ++N + G IA +DL R G +LG +QSG Sbjct: 900 TSLTQEARRRLQAIENFSELGSGIHIAMQDLDIRGAGNMLGAEQSGF 946 >gi|198275717|ref|ZP_03208248.1| hypothetical protein BACPLE_01892 [Bacteroides plebeius DSM 17135] gi|198271346|gb|EDY95616.1| hypothetical protein BACPLE_01892 [Bacteroides plebeius DSM 17135] Length = 1122 Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 139/412 (33%), Positives = 221/412 (53%), Gaps = 23/412 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + Q K+E G + + + ++ + + T Q A +++ DM M R++ Sbjct: 525 LIKLYSQRKQEKGFKYSPDSFLQHELEASFLYEDTPDQLKATQEVKADMESDKPMDRLVC 584 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LA QH++ KK ++ VE ++ Sbjct: 585 GDVGFGKTEVAIRAAFKAVTDNKQVAVLVPTTVLAYQHFQTFKKRLEDMPCKVEYLSRAR 644 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + L+ +A G+ +I+IGTH + S+++ L L+I+DE+ +FGV + KL Q Sbjct: 645 TAKDTSRILKELADGKINILIGTHKIIGKSVKFKDLGLLIIDEEQKFGVSVKEKLRQLKV 704 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478 L +TATPIPRTL + +G D+S I P R PI+T + N +E+I E + Sbjct: 705 NVDTLTLTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFN--EEIISEAINFE 762 Query: 479 LSEGKKAYWICPQIE---EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 +S + +++ +I+ E K R++ + + I HG+M + E ++ Sbjct: 763 MSRNGQVFFVNNRIQNLVELKAMILRNIPD----------CRVCIGHGQMQPEELEKIIF 812 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F N +L+ATT+IE GID+ +A+ III A++FGL+ LHQ+RGRVGRG + + C LL Sbjct: 813 DFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRGNKKAFCYLL 872 Query: 596 YHPPLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 PPLS + RL ++N D G IA +DL R G +LG +QSG Sbjct: 873 -APPLSSLTPEARRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 923 >gi|163815685|ref|ZP_02207057.1| hypothetical protein COPEUT_01865 [Coprococcus eutactus ATCC 27759] gi|158448990|gb|EDP25985.1| hypothetical protein COPEUT_01865 [Coprococcus eutactus ATCC 27759] Length = 1186 Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 132/429 (30%), Positives = 222/429 (51%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW + + +A + L +Q K+ G + + + ++ P+ T Q Sbjct: 579 EWQKVRNRVKGHVDEVAEHLVKLYAERQSKE--GHAYSPDSEWQKEFEETFPYKETDDQL 636 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 AI D+ DM M R++ GDVG GKT VA+ A AV Q + P ILA+QHY Sbjct: 637 RAIADVKADMESSRIMDRLVCGDVGFGKTEVAIRAAFKAVGDSRQVAYLVPTTILAEQHY 696 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + ++ +++ ++ Q + L + G+ I+IGTH L +++ L L+ Sbjct: 697 ETFTERMKDYPVVIRLLCRFCTQKEIKNTLRELKEGKVDIVIGTHRLLSKDVEFKNLGLL 756 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV + K+ + T VL +TATPIPRTL ++ +G D+S + E P R+PI Sbjct: 757 IIDEEQRFGVNHKEKIKEMKTNVDVLTLTATPIPRTLHMSLVGIRDMSLLEEAPVDRRPI 816 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TS 516 +T ++ ++ + E + L+ + Y++ ++ + +E+F + + + Sbjct: 817 QTYVMEYDK-ELAREAIARELARQGQVYYVYNRVND---------IEQFTAEVQKLVPNA 866 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 ++ HG+M E +M F +L+ TT+IE G+D+ +A+ III +A +FGLAQL Sbjct: 867 NVEFAHGQMDGRTLEDIMYRFNKKEIDVLVCTTIIETGLDIPNANTIIIHDANNFGLAQL 926 Query: 577 HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 +QLRGRVGR + + + Y + +S+ + RL +K D G I++ DL R G Sbjct: 927 YQLRGRVGRSDRSAFAFMFYRRNKVISEVAEKRLRAIKEYTDLGSGVKISKADLNIRGAG 986 Query: 632 EILGIKQSG 640 +LG QSG Sbjct: 987 SVLGESQSG 995 >gi|297171405|gb|ADI22408.1| transcription-repair coupling factor (superfamily II helicase) [uncultured Planctomycetales bacterium HF0500_02G17] Length = 1114 Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 137/378 (36%), Positives = 203/378 (53%), Gaps = 17/378 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q +A+ +I +DMS M R++ GDVG GKT VA+ A A E G Q ++ P Sbjct: 561 PYDETEDQLAALAEIKKDMSSDRPMDRLICGDVGFGKTEVAIRAAFKACEFGRQVAVLVP 620 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QH + + V ++ Q L + G+ ++IGTH L Sbjct: 621 TTVLAEQHERTFRSRFADYPFRVASLSRFKSQKELNATLAALRRGEIDVVIGTHRLLSKD 680 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +++ L LV+VDE+ RFGV+ + +L + VL ++ATPIPRTL ++ LG DIS +T Sbjct: 681 VKFADLGLVVVDEEQRFGVEHKERLLRLRLTVDVLTLSATPIPRTLHMSMLGLRDISSLT 740 Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R+ I T +IP N RI + I R LS + Y++ ++ N +S+ + Sbjct: 741 TPPLERRAIVTEVIPYNGRRIAQAIAR---ELSRNGQVYFVHNRVH-----NIKSIADNV 792 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 L + I I HG+M + E VM F +L++TT+IE GID+ A+ +II + Sbjct: 793 RQLAPD--AKIVIGHGQMPPNELEEVMLKFMRREADVLVSTTIIESGIDISSANTMIIND 850 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAE 622 A+ FGLA LHQLRGRVGR + C LL P+ + + RL ++ GF IA Sbjct: 851 ADRFGLADLHQLRGRVGRSSHRAYCYLLLPVDRPVREVAQKRLKAIEQYSMLGAGFKIAM 910 Query: 623 EDLKQRKEGEILGIKQSG 640 DL+ R G ILG +QSG Sbjct: 911 RDLEIRGAGNILGAEQSG 928 >gi|302841163|ref|XP_002952127.1| hypothetical protein VOLCADRAFT_92718 [Volvox carteri f. nagariensis] gi|300262713|gb|EFJ46918.1| hypothetical protein VOLCADRAFT_92718 [Volvox carteri f. nagariensis] Length = 1059 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 144/405 (35%), Positives = 228/405 (56%), Gaps = 40/405 (9%) Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM--SQKNRMLRILQGDVGSGKTLVAL 311 P++ + +A + + + F T +Q A+ ++L DM + + M R+LQGDVGSGKT+VAL Sbjct: 590 PVSADPLVAAAV-QALGFELTGAQRRAVGEVLGDMRPERGSTMYRLLQGDVGSGKTVVAL 648 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFI--------KKYTQNTQIIVE--IITGNMPQ 361 +AM AA G Q++++ P +LAQQH+ + K+ + + E ++TG Sbjct: 649 LAMLAAASCGLQSLLVVPTTVLAQQHHRNLGALMDRLPKRVRRKAGLEGEPLLLTGEAKA 708 Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ--KAT 419 +R A + +A G + +GTH L + +++ L L+++DE H+FGV Q +L+ Sbjct: 709 KEKRLAAQGLADGSILLAVGTHGLL-NLTEFHNLGLLVLDESHKFGVVQMERLSSLIAQR 767 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII------PINRIDEVIE 473 PH+L M+ATPIPRTL G +D+S++ E P GR P+ T ++ P D V E Sbjct: 768 PPHLLNMSATPIPRTLAAAMYGHMDVSRLDELPPGRTPVLTKLVQDDSDMPYRDPDAVRE 827 Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDK 530 A W EE ++ V++ L F ++HGRM +K Sbjct: 828 ---------MDAMW-----EEVLREELKNAVDQATVLAARFEPLGVPTRLLHGRMKAEEK 873 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 + +++F+ G +LL+ TTV+EVG+DV +A+++++E+AE FGLAQLHQLRGRVGRG Sbjct: 874 NAALEAFRGGDVRLLVCTTVVEVGVDVPEATVVVVEHAERFGLAQLHQLRGRVGRGGRRG 933 Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635 C L P + + RL ++++T DGF +AE DL+QR G + G Sbjct: 934 MCFLCV-PFGDRAARERLGIMEHTNDGFEVAEWDLEQRGMGHLFG 977 >gi|268608427|ref|ZP_06142154.1| transcription-repair coupling factor [Ruminococcus flavefaciens FD-1] Length = 1160 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 133/406 (32%), Positives = 215/406 (52%), Gaps = 13/406 (3%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + + +K +G + +I + P+ T Q +I +I DM + M R+L Sbjct: 580 LIALYAKREKSVGFAFYPDDEIQRDFEERFPYVETDDQLQSISEIKADMERARPMERLLC 639 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VAL A V AG Q I+AP +LA QHY+ + ++ + VE+++ Sbjct: 640 GDVGFGKTEVALRAAMKCVLAGKQCAILAPTTVLAWQHYQTALRRFEHFPVKVELLSRYR 699 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + + ++++ G+ I+IGTH + Q S+ + L L I+DE+ RFGV + K + T Sbjct: 700 SPKQQEEIIKKLKQGRIDILIGTHKIIQKSVVFKDLGLAIIDEEQRFGVAHKEKFKESFT 759 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 VL+++ATPIPRTL + G D+S + E P R P++T +I N I +++ + L Sbjct: 760 GVDVLMLSATPIPRTLNMAMSGIRDMSVLEEPPQDRYPVQTYVIEYN-IGTIVQAIVREL 818 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 G + Y+I ++E ++ + L + IA HG+MS+ + + Sbjct: 819 RRGGQVYYIHNRVE-----TIQACAAKLQQLLPE--ARIAYAHGQMSEDQMSDIWEQLVE 871 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 +LI TT+IE G+DV + + +IIE+++ FGL+QL+QLRGRVGR Y Sbjct: 872 HEIDILICTTIIETGVDVPNVNTLIIEDSDRFGLSQLYQLRGRVGRSNRRGYAYFTYQRD 931 Query: 600 --LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640 L++ + RL+ ++ GF IA DL+ R G ILG +Q G Sbjct: 932 KVLTEVATKRLNAMREFTQFGSGFRIALRDLEIRGAGSILGGRQHG 977 >gi|332878210|ref|ZP_08445938.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683822|gb|EGJ56691.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 1104 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 132/378 (34%), Positives = 207/378 (54%), Gaps = 17/378 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T Q A ++ DM M R++ GDVG GKT VA+ A AV+ G Q ++ P Sbjct: 545 YEDTPDQSKATAEVKADMESAKPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPT 604 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA QHY+ + ++ + ++ + ++ LE +A GQ I+IGTH + + + Sbjct: 605 TVLAFQHYQTFSQRMKDFPVRIDYLNRFRTAKEKKIILEELAKGQLDIVIGTHQIVGEKV 664 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 QY L L+IVDE+ +FGV + KL VL +TATPIPRTL + + D+S I Sbjct: 665 QYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLMAARDLSVINT 724 Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P R PI + +IP + +EVI + ++ + G + +++ ++E +E +++R Sbjct: 725 PPPNRYPIDSQVIPFS--EEVIRDGIRYEIQRGGQVFFMHNRVENIQE--VAGMIQRLLP 780 Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 + IAI HG+M E M +F G +L+ATT+IE G+DV +A+ I I NA Sbjct: 781 -----DARIAIGHGQMDGKKLEETMLAFMEGAYDVLVATTIIESGLDVPNANTIFINNAH 835 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPL---SKNSYTRLSVLKNTED---GFLIAEE 623 +FGL+ LHQ+RGRVGR + + C + PPL S ++ R+ + D G IA + Sbjct: 836 NFGLSDLHQMRGRVGRSNKKAFCYFI-TPPLIAMSDDARKRIEAIAQFSDLGSGLNIAMK 894 Query: 624 DLKQRKEGEILGIKQSGM 641 DL+ R G++LG +QSG Sbjct: 895 DLEIRGAGDLLGGEQSGF 912 >gi|28377424|ref|NP_784316.1| transcription-repair coupling factor [Lactobacillus plantarum WCFS1] gi|28270256|emb|CAD63157.1| transcription-repair coupling factor [Lactobacillus plantarum WCFS1] Length = 1175 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 140/429 (32%), Positives = 225/429 (52%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ A E +A ++ L +++ +K P + + P+ T Q Sbjct: 568 EWTKAKRKVAAKIEDIADELVDLYAKREAEKGYAFP--PDDSYQDDFDNDFPYPETPDQI 625 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I +I DM + M R+L GDVG GKT VAL A A+EAG Q + P ILAQQHY Sbjct: 626 RSINEIKHDMERPKPMDRLLVGDVGYGKTEVALRAAFKAIEAGKQVAFLVPTTILAQQHY 685 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + + I V +++ ++ ++++ G+ I++GTH L + + L L+ Sbjct: 686 ETMLNRFEGYPINVGMLSRFRTTKEMKETVQQLKSGEIDIVVGTHRLLSKDVAFADLGLL 745 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 746 IIDEEQRFGVKHKERLKALKASVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPTNRYPI 805 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T ++ N I E IER + + +++ ++ + VV + L + Sbjct: 806 QTYVMEQNFGVIKEGIER---EMQRNGQVFYLHNRVH-----DIDKVVAQIKDLVPD--A 855 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 ++A I G+M + E ++ F G +L+ TT+IE G+D+ + + + +ENA+ GL+QL Sbjct: 856 AVAHIDGQMPESQLEGILYDFIRGEYDVLVTTTIIETGVDIPNVNTLFVENADRMGLSQL 915 Query: 577 HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGR+GR ++ Y + L++ RL +K+ TE GF IA DL R G Sbjct: 916 YQLRGRIGRSSRVAYAYFTYQQNKVLTEVGEKRLQAIKDFTELGSGFKIAMRDLSIRGAG 975 Query: 632 EILGIKQSG 640 +LG +Q G Sbjct: 976 NLLGKQQHG 984 >gi|315644370|ref|ZP_07897510.1| transcription-repair coupling factor [Paenibacillus vortex V453] gi|315280247|gb|EFU43539.1| transcription-repair coupling factor [Paenibacillus vortex V453] Length = 1175 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 131/378 (34%), Positives = 211/378 (55%), Gaps = 17/378 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q AI +I +DM Q M R+L GDVG GKT VA+ A + G Q ++ P Sbjct: 610 PYDETPDQLRAITEIKKDMEQNRPMDRLLCGDVGYGKTEVAVRAAFKSAIEGKQVAVLVP 669 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHYE ++ N I +++++ + + + ++++ G I+IGTH L Sbjct: 670 TTILAQQHYETFRERFANYPINIQVLSRFRSRKEQNETIKKVKQGSVDILIGTHRLLSQD 729 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I + L L+IVDE+ RFGV + KL + T VL +TATPIPRTL ++ LG D+S I Sbjct: 730 IVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIE 789 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R P++T ++ ++ + E IER L+ G + Y++ +++ + + + Sbjct: 790 TPPENRFPVQTYVVEHSQTLVREAIER---ELARGGQVYYLYNRVQ-----GIQEMAAQI 841 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + L + + + HG+MS+ + E + F +G +L++T++IE G+D+ + + +I+ + Sbjct: 842 SMLVPE--ARVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHD 899 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622 A+ GL+QL+QLRGRVGR I+ Y L++ + RL +K TE GF IA Sbjct: 900 ADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAM 959 Query: 623 EDLKQRKEGEILGIKQSG 640 DL R G +LG +Q G Sbjct: 960 RDLSIRGAGNLLGAEQHG 977 >gi|254555607|ref|YP_003062024.1| transcription-repair coupling factor [Lactobacillus plantarum JDM1] gi|254044534|gb|ACT61327.1| transcription-repair coupling factor [Lactobacillus plantarum JDM1] Length = 1175 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 140/429 (32%), Positives = 225/429 (52%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ A E +A ++ L +++ +K P + + P+ T Q Sbjct: 568 EWTKAKRKVAAKIEDIADELVDLYAKREAEKGYAFP--PDDSYQDDFDNDFPYPETPDQI 625 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I +I DM + M R+L GDVG GKT VAL A A+EAG Q + P ILAQQHY Sbjct: 626 RSINEIKHDMERPKPMDRLLVGDVGYGKTEVALRAAFKAIEAGKQVAFLVPTTILAQQHY 685 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + + I V +++ ++ ++++ G+ I++GTH L + + L L+ Sbjct: 686 ETMLNRFEGYPINVGMLSRFRTTKEMKETVQQLKSGEIDIVVGTHRLLSKDVAFADLGLL 745 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 746 IIDEEQRFGVKHKERLKALKASVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPTNRYPI 805 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T ++ N I E IER + + +++ ++ + VV + L + Sbjct: 806 QTYVMEQNFGVIKEGIER---EMQRNGQVFYLHNRVH-----DIDKVVAQIKDLVPD--A 855 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 ++A I G+M + E ++ F G +L+ TT+IE G+D+ + + + +ENA+ GL+QL Sbjct: 856 AVAHIDGQMPESQLEGILYDFIRGEYDVLVTTTIIETGVDIPNVNTLFVENADRMGLSQL 915 Query: 577 HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGR+GR ++ Y + L++ RL +K+ TE GF IA DL R G Sbjct: 916 YQLRGRIGRSSRVAYAYFTYQQNKVLTEVGEKRLQAIKDFTELGSGFKIAMRDLSIRGAG 975 Query: 632 EILGIKQSG 640 +LG +Q G Sbjct: 976 NLLGKQQHG 984 >gi|306835701|ref|ZP_07468707.1| transcription-repair coupling factor [Corynebacterium accolens ATCC 49726] gi|304568419|gb|EFM43978.1| transcription-repair coupling factor [Corynebacterium accolens ATCC 49726] Length = 1213 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 133/429 (31%), Positives = 220/429 (51%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W + ++ A +AG++ L ++Q G + ++ N PF T+ Q Sbjct: 588 DWKNTKKKARAAVREIAGELVDLYAKRQAAP--GHQFAPDNPWQAEMEDNFPFVETEDQM 645 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 AI + +DM M R++ GDVG GKT VA+ A AV+ G Q ++ P +LAQQHY Sbjct: 646 LAIDAVKEDMESTVPMDRVVVGDVGYGKTEVAIRAAFKAVQDGTQVAVLVPTTLLAQQHY 705 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + + +++ + + + +A G I++GTH L Q + + L L+ Sbjct: 706 DTFSERMAGFPVKMAVLSRFTSKKEATEIFKGLADGSIDIVVGTHRLLQTGVHWKNLGLI 765 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 +VDE+ RFGV+ + + + VL M+ATPIPRTL ++ G ++S I P R P+ Sbjct: 766 VVDEEQRFGVEHKEHIKALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPV 825 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516 T + +V ++ L + ++I ++ EKK R +V + Sbjct: 826 LTYVGAYED-KQVAAAIRRELLRDGQTFFIHNKVSDIEKKARELRDLVPE---------A 875 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 I + HG+M++ E + F + +L+ TT++E G+D+ +A+ +I+ENA H GL+QL Sbjct: 876 RIVVAHGQMNEDVLEKTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQL 935 Query: 577 HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 HQLRGRVGR E LY L++ SY RL+ + D G +A +DL+ R G Sbjct: 936 HQLRGRVGRSRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAG 995 Query: 632 EILGIKQSG 640 +LG +QSG Sbjct: 996 NVLGAQQSG 1004 >gi|308179637|ref|YP_003923765.1| transcription-repair coupling factor [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045128|gb|ADN97671.1| transcription-repair coupling factor [Lactobacillus plantarum subsp. plantarum ST-III] Length = 1175 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 140/429 (32%), Positives = 225/429 (52%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EWT R+ A E +A ++ L +++ +K P + + P+ T Q Sbjct: 568 EWTKAKRKVAAKIEDIADELVDLYAKREAEKGYAFP--PDDSYQDDFDNDFPYPETPDQI 625 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +I +I DM + M R+L GDVG GKT VAL A A+EAG Q + P ILAQQHY Sbjct: 626 RSINEIKHDMERPKPMDRLLVGDVGYGKTEVALRAAFKAIEAGKQVAFLVPTTILAQQHY 685 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 E + + I V +++ ++ ++++ G+ I++GTH L + + L L+ Sbjct: 686 ETMLNRFEGYPINVGMLSRFRTTKEMKETVQQLKSGEIDIVVGTHRLLSKDVAFADLGLL 745 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+ RFGV+ + +L + VL +TATPIPRTL ++ LG D+S I P R PI Sbjct: 746 IIDEEQRFGVKHKERLKALKASVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPTNRYPI 805 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T ++ N I E IER + + +++ ++ + VV + L + Sbjct: 806 QTYVMEQNFGVIKEGIER---EMQRNGQVFYLHNRVH-----DIDKVVAQIKDLVPD--A 855 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 ++A I G+M + E ++ F G +L+ TT+IE G+D+ + + + +ENA+ GL+QL Sbjct: 856 AVAHIDGQMPESQLEGILYDFIRGEYDVLVTTTIIETGVDIPNVNTLFVENADRMGLSQL 915 Query: 577 HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGR+GR ++ Y + L++ RL +K+ TE GF IA DL R G Sbjct: 916 YQLRGRIGRSSRVAYAYFTYQQNKVLTEVGEKRLQAIKDFTELGSGFKIAMRDLSIRGAG 975 Query: 632 EILGIKQSG 640 +LG +Q G Sbjct: 976 NLLGKQQHG 984 >gi|296448068|ref|ZP_06889971.1| transcription-repair coupling factor [Methylosinus trichosporium OB3b] gi|296254425|gb|EFH01549.1| transcription-repair coupling factor [Methylosinus trichosporium OB3b] Length = 1173 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 136/384 (35%), Positives = 210/384 (54%), Gaps = 27/384 (7%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 P+ T+ Q +AI+ +L D+S M R++ GDVG GKT VAL A A G Q ++ Sbjct: 620 FPYDETEDQAAAIEAVLDDLSSGRPMDRLVCGDVGFGKTEVALRAAFCAAINGRQVAVVV 679 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LA+QHY+ I V ++ A R A IA G I++GTHA+ Sbjct: 680 PTTLLARQHYKTFSTRFSGLPIRVAQLSRMTTAADARLAKSGIADGTIDIVVGTHAVLGK 739 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 +I + L LVI+DE+ FGV + +L + HVL ++ATPIPRTL L G ++S I Sbjct: 740 TISFKDLGLVIIDEEQHFGVGHKERLKELRAEVHVLTLSATPIPRTLQLAMTGVRELSLI 799 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN--FRSV 503 P R +++ + P D +I R + +L E G +A+++CP+IE+ +++ R V Sbjct: 800 ATAPVDRLAVRSFVSP---FDPLIVR-EALLRERYRGGQAFFVCPRIEDLEDAAAFLREV 855 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 V + + HG+M+ D E M +F +G +L++TT++E G+D+ A+ + Sbjct: 856 VPE---------AKFVMAHGQMAAGDLEERMTAFYDGKYDILLSTTIVESGLDIPTANTL 906 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN----SYTRLSVLKNTED--- 616 I+ A+ FGLAQL+QLRGRVGR + + L+ P +K + RL VL++ + Sbjct: 907 IVWRADMFGLAQLYQLRGRVGRSK--TRAYALFTTPANKTITPQAQKRLEVLQSLDTLGA 964 Query: 617 GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL R G +LG +QSG Sbjct: 965 GFQLASHDLDIRGAGNLLGDEQSG 988 >gi|225568648|ref|ZP_03777673.1| hypothetical protein CLOHYLEM_04726 [Clostridium hylemonae DSM 15053] gi|225162576|gb|EEG75195.1| hypothetical protein CLOHYLEM_04726 [Clostridium hylemonae DSM 15053] Length = 1113 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 142/429 (33%), Positives = 232/429 (54%), Gaps = 19/429 (4%) Query: 219 EWTSPARE-RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EWT ++ R A E+ +AL R++ + G + Q+ PF T+ Q Sbjct: 513 EWTKTKKKVRGAVKEIARDLVALYAARQE---QEGYVYGADTVWQQEFEEMFPFEETEDQ 569 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 AI+ + +DM + M R++ GDVG GKT +A+ A AV+ Q V + P ILAQQH Sbjct: 570 LLAIEAVKRDMQSRRIMDRLICGDVGYGKTEIAIRAAFKAVQEDKQVVYLVPTTILAQQH 629 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y + ++ + ++++ A ++K + G I+IGTH + + +++ L L Sbjct: 630 YNTFVQRMRDFPVRIDLMCRFRTPAQQKKTAQDTKRGLVDIVIGTHRVLSNDMEFKNLGL 689 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +I+DE+ RFGVQ + K+ + VL +TATPIPRTL ++ +G D+S + E P R P Sbjct: 690 LIIDEEQRFGVQHKEKIKKLKENVDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPNDRMP 749 Query: 458 IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 I+T ++ N DE++ E ++ S + Y++ ++E+ E + R L Sbjct: 750 IQTYVMEYN--DEMVREAIERECSRQGQVYYVYNRVEDIAE-----ITARIQKLVPEV-- 800 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 S+A HG+M + E +M F NG +L++TT+IE G+D+ + + +II +A+ GL+QL Sbjct: 801 SVAFAHGQMKEHQLEKIMYDFINGEIDVLVSTTIIETGLDISNVNTMIIHDADRLGLSQL 860 Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 +QLRGRVGR ++ LLY L + + RL+ ++ D GF IA DL+ R G Sbjct: 861 YQLRGRVGRSNRMAYAFLLYRRDKMLKEVAEKRLAAIREFTDLGSGFKIAMRDLEIRGAG 920 Query: 632 EILGIKQSG 640 +LG +Q G Sbjct: 921 NLLGAQQHG 929 >gi|224026146|ref|ZP_03644512.1| hypothetical protein BACCOPRO_02902 [Bacteroides coprophilus DSM 18228] gi|224019382|gb|EEF77380.1| hypothetical protein BACCOPRO_02902 [Bacteroides coprophilus DSM 18228] Length = 845 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 139/409 (33%), Positives = 219/409 (53%), Gaps = 17/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + Q K+E G + + + ++ + + T Q A +D+ DM M R++ Sbjct: 250 LIKLYSQRKQEKGFKYSPDSFLQHELEASFLYEDTPDQLKATQDVKADMESDRPMDRLVC 309 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LA QHY+ K + V+ ++ Sbjct: 310 GDVGFGKTEVAVRAAFKAVADNKQVAVLVPTTVLAYQHYQTFSKRLEGMPCKVDYLSRAR 369 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + L+ +A+G +I+IGTH + S+++ L L+I+DE+ +FGV + KL Q Sbjct: 370 TAKDTSRILKELANGDINILIGTHKIIGKSVKFKDLGLLIIDEEQKFGVSVKEKLRQIKV 429 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478 L MTATPIPRTL + +G D+S I P R PI+T + N +E+I E + Sbjct: 430 NVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFN--EEIITEAINFE 487 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 +S + +++ +I+ E ++++ER + I HG+M + E ++ F Sbjct: 488 MSRNGQVFFVNNRIQNLPE--LKAMIERNIP-----DCRVCIGHGQMQPEELEKIIFDFV 540 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 N +L+ATT+IE GID+ +A+ III A++FGL+ LHQ+RGRVGR + + C LL P Sbjct: 541 NYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-AP 599 Query: 599 PLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 PLS + RL ++N D G IA +DL R G +LG +QSG Sbjct: 600 PLSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 648 >gi|37523406|ref|NP_926783.1| transcription-repair coupling factor [Gloeobacter violaceus PCC 7421] gi|35214410|dbj|BAC91778.1| transcription-repair coupling factor [Gloeobacter violaceus PCC 7421] Length = 1154 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 131/406 (32%), Positives = 220/406 (54%), Gaps = 13/406 (3%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + + +E IP + +++ + P+ T Q AI+++ DM + M R++ Sbjct: 576 LLDLYARRAQESRIPFPPDQPWQREMEESFPYPLTPDQARAIQEVKIDMESERPMDRLVC 635 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A A+ +G Q ++ P +LA QHY K+ I + ++ Sbjct: 636 GDVGFGKTEVAIRAAFKALTSGVQCAVLVPTTVLASQHYHTFKERFAPYPISIGLLNRFR 695 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + ++ L R+A G+ ++IGTH L +++ L L+++DE+ RFGV Q+ K+ T Sbjct: 696 TASEKKDLLARLATGELDLVIGTHQLLGAGVRFQNLGLLVIDEEQRFGVAQKEKIKTLKT 755 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 VL +TATPIPRTL ++ G ++S IT P R+PIKT + P + + V + L Sbjct: 756 QVDVLTLTATPIPRTLYMSLSGVREMSLITTPPPSRRPIKTHLAPYD-PEHVRTAILQEL 814 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 G + +++ +IE + + V R ++ T+ + + HG+M + + ES M +F Sbjct: 815 GRGGQIFYVYNRIE-----DIQDVAARLQAMIP--TARVCVGHGQMEEGELESTMLAFSG 867 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--H 597 G +L+ TT+IE G+D+ + I++ENA FGL+QL+QLRGRVGR + + Y Sbjct: 868 GEFDILVCTTIIESGLDIPRVNTILVENAHQFGLSQLYQLRGRVGRSGVQAHAWMFYKQE 927 Query: 598 PPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSG 640 L+ + RL ++ G+ +A D++ R G +LG +QSG Sbjct: 928 EALTDEARKRLRAIQEFTQLGSGYQLAMRDMEIRGVGNLLGAEQSG 973 >gi|289664638|ref|ZP_06486219.1| transcription-repair coupling factor [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 1154 Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 140/381 (36%), Positives = 206/381 (54%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q +AI L+D+ M R++ GDVG GKT VA+ A AA AG Q ++ Sbjct: 604 GFPFEETPDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVL 663 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LA+QHY + + I VE+++ + LE++A G +IIGTH L Q Sbjct: 664 VPTTLLAEQHYRNFRDRFADYPIKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRLLQ 723 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++ L LV+VDE+ RFGV+Q+ L H+L +TATPIPRTL + G D+S Sbjct: 724 PDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSI 783 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R ++T I + + E +R LS G + Y++ +E S+V Sbjct: 784 IATPPPNRLAVQTFITAWDNTLLREAFQR---ELSRGGQLYFLHNDVE--------SIVR 832 Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 L E + I I HG+M + + E VM F+ +L++TT+IE GID+ +A+ II Sbjct: 833 MQRDLSELVPEARIGIAHGQMPERELEQVMLDFQKQRFNVLLSTTIIESGIDIPNANTII 892 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619 I A+ FGLAQLHQLRGRVGR + L+ ++ ++ RL + + ++ GF Sbjct: 893 INRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEAIASMDELGAGFT 952 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG QSG Sbjct: 953 LATHDLEIRGAGELLGEDQSG 973 >gi|289579379|ref|YP_003478006.1| transcription-repair coupling factor [Thermoanaerobacter italicus Ab9] gi|289529092|gb|ADD03444.1| transcription-repair coupling factor [Thermoanaerobacter italicus Ab9] Length = 1163 Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 149/461 (32%), Positives = 236/461 (51%), Gaps = 34/461 (7%) Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFK 248 DL+QK P+ NP K EW R+ E LA + L ++Q Sbjct: 551 DLVQKYVGPT--------DNPPKLNKLGGSEWLKAKRKAKKAVEDLAKDLIQLYAKRQIA 602 Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 K G + + ++ P+ T+ Q IK+I +DM + M R+L GDVG GKT Sbjct: 603 K--GHAFSPDTPWQREFEEQFPYEETEDQLRCIKEIKEDMEKDKPMDRLLCGDVGYGKTE 660 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368 VAL A AV G Q + P ILA QHY + + + +E+++ + + + Sbjct: 661 VALRAAFKAVADGKQVAFLCPTTILAYQHYTNFMERFKEFPVKIEMLSRFRTPKEQAQII 720 Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428 + +A G II+GTH L Q+ +++ L L+I+DE+ RFGV + K+ + VL ++A Sbjct: 721 KGLAEGTIDIIVGTHRLLQNDVKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSA 780 Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAY 486 TPIPRTL ++ +G D+S + P R P++T ++ N I + I R + G + Y Sbjct: 781 TPIPRTLHMSLIGIRDMSVLENPPEDRFPVETYVVEFNEELIKDAILR---EIGRGGQVY 837 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKL 544 ++ ++ + +E+ SL + +A+ HG+M + E VM F NG + Sbjct: 838 FVYNRV---------NGIEKMASLVKDLVPGCRVAVAHGQMEESQLEKVMIDFLNGEYDV 888 Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSK 602 L++TT+IE G+D+ + + II+ +A+ GL+QL+QLRGRVGR ++ Y LS+ Sbjct: 889 LVSTTIIETGLDIPNVNTIIVYDADKLGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLSE 948 Query: 603 NSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640 + RL +K TE GF IA DL+ R G +LG +Q G Sbjct: 949 VAEKRLEAIKEFTEFGSGFKIAMRDLEIRGAGNLLGAEQHG 989 >gi|157413397|ref|YP_001484263.1| transcriptional-repair coupling factor [Prochlorococcus marinus str. MIT 9215] gi|157387972|gb|ABV50677.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str. MIT 9215] Length = 1169 Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 133/426 (31%), Positives = 233/426 (54%), Gaps = 20/426 (4%) Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317 +G ++ + P+ PT Q +A+++I DM M R++ GDVG GKT VA+ A+ A Sbjct: 599 DGPWQDELEESFPYQPTPDQITAVEEIKSDMESDKPMDRLVCGDVGFGKTEVAVRAIFKA 658 Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377 + +G Q +++AP ILAQQH+ I I V ++ R++ + + + Sbjct: 659 ITSGKQVILLAPTTILAQQHWRTINNRFSPYPIKVSLLNRFKTVNERKEIYAGLKNNKID 718 Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437 +++ TH + I+ L L+++DE+ RFGV+Q+ K+ + T VL ++ATPIPRTL + Sbjct: 719 LVVATHQILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKKIKTNIDVLTLSATPIPRTLYM 778 Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497 + G +S + P R+ IKT + I+ +D + + L G + +++ P+I + Sbjct: 779 SLSGLRQMSLLNTPPPSRRSIKTYLSEID-MDVIRTAINQELDRGGQIFYVLPRISD--- 834 Query: 498 SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556 + + N L F S + HG+M++ D E+ M +F NG L+I TT+IE G+D Sbjct: 835 -----IDQAVNKLKIMFPSLKFIVAHGQMNETDLENAMIAFNNGEVDLMICTTIIESGLD 889 Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK---NSYTRLSVLKN 613 + + IIIE++ FGL+QL+QLRGRVGR + + L++P ++K + RL +K+ Sbjct: 890 IPKVNTIIIEDSHKFGLSQLYQLRGRVGRS-GVQAHAWLFYPNINKINDAAKQRLKAIKD 948 Query: 614 TED---GFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHIL 667 + G+ +A +D++ R G +LG +QSG + + LH+++ EI+ ++ + Sbjct: 949 FSELGSGYQLAMKDMEIRGVGSLLGEEQSGKVNAIGYDLYIEMLHEAISEISGQEIPEVN 1008 Query: 668 TQDPDL 673 DL Sbjct: 1009 DTQIDL 1014 >gi|219128770|ref|XP_002184578.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217404028|gb|EEC43977.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 942 Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 145/442 (32%), Positives = 240/442 (54%), Gaps = 27/442 (6%) Query: 214 KAKDFEWTSPARERLAYDELLAGQ--IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271 + K W S A++++ + L Q +AL R+ +++ P +VE + Q+ ++ + Sbjct: 214 RVKGEAW-SKAKQKVEENTLQLAQDVLALYATRETLQRQPFDP-SVE-DVVQEFSKSFLY 270 Query: 272 SPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 PT Q+ ++I DM ++R M R++ GDVG GKT VA+ A+ ++ G QA ++AP Sbjct: 271 EPTTDQKKCFEEIENDMVWRSRPMDRLICGDVGFGKTEVAIRALFRSIINGRQAALLAPT 330 Query: 331 GILAQQHYE-FIKKYTQNTQ--IIVEIITGNMPQAHR--RKALERIAHGQAHIIIGTHAL 385 G+LA QHY+ +K+ T+ I + ++ G M + + R+ I G+ +I+GTHAL Sbjct: 331 GVLAAQHYKNIVKRMGPGTEYNINIALLRGGMGKQTKAGRELRGEIEGGKTQLIVGTHAL 390 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445 + +++ L L++VDE+ RFGV+Q+ +L VL ++ATPIPRTL ++ G D Sbjct: 391 LSNEMKFKNLGLLVVDEEQRFGVKQKERLKLICDGIDVLTLSATPIPRTLQMSLSGIRDT 450 Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 S I P RKP T + + D V + L+ G + Y++ P+I S+++ Sbjct: 451 STIRSPPPMRKPTVTHVQDFSE-DIVKTAISTELARGGQCYYVVPRI---------SMLD 500 Query: 506 RFNSLHEHFTSSIAII--HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + I II HGRM E + F G +L+ATTVIE G+D+ + I Sbjct: 501 EAEQTIQSLFPGIRIIQAHGRMQRNGAEENVAEFAEGNYDVLLATTVIENGVDIPSVNTI 560 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPPLSKNSYTRLSV---LKNTEDGFL 619 +++N++ FG++ L+QLRGRVGR ++ + LY +++ + RL L GF Sbjct: 561 VVQNSQAFGMSTLYQLRGRVGRSDKQAFAYFLYREESITEQAAMRLQAIGELSELGSGFD 620 Query: 620 IAEEDLKQRKEGEILGIKQSGM 641 +A DL+ R G +LG +QSGM Sbjct: 621 VANRDLEIRGAGSLLGTEQSGM 642 >gi|242279458|ref|YP_002991587.1| transcription-repair coupling factor [Desulfovibrio salexigens DSM 2638] gi|242122352|gb|ACS80048.1| transcription-repair coupling factor [Desulfovibrio salexigens DSM 2638] Length = 1149 Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 128/377 (33%), Positives = 208/377 (55%), Gaps = 17/377 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T QE AI+D+ +DM M R++ GDVG GKT VAL A AV G Q V++ P Sbjct: 608 FEETPDQEKAIQDVFRDMESPEPMDRLVCGDVGFGKTEVALRAAFRAVLDGKQVVLLCPT 667 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA+QHY+ + + + V +++ +P++ +++ LE++A G+ I+IGTH + + Sbjct: 668 TVLAEQHYQTFVQRMEGFPVTVGMLSRFVPKSRQKRVLEQMAAGELDILIGTHRVLSKDV 727 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + L L+I+DE+ RFGV+ + ++ + L +TATPIPRTL L+ G +S I Sbjct: 728 EAPNLGLLILDEEQRFGVRHKERVKEMRKNIDALTLTATPIPRTLQLSLSGVRSLSTIET 787 Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P RKP++T +I + + V+ R L G + +W+ +++ VVE Sbjct: 788 PPVDRKPVETALIERDEAMLASVVAR---ELERGGQVFWVHNRVQ-----GLERVVEFVK 839 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 L + I + HG+M++ + E + F + +L+AT +IE G+D +A+ +I++ A Sbjct: 840 KLAPD--AKIGMAHGQMTEKNLEETIHKFWHKELDILVATAIIESGLDFPNANTLIVDQA 897 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEE 623 + FGL QL+QLRGRVGR + LS+ + R+ ++ + GF +A E Sbjct: 898 QMFGLGQLYQLRGRVGRSTRQAYAYFAVSSLDSLSEKAKRRMQIILQLDYLGAGFKVAME 957 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R G ILG QSG Sbjct: 958 DLRLRGAGNILGEVQSG 974 >gi|71899709|ref|ZP_00681861.1| Transcription-repair coupling factor [Xylella fastidiosa Ann-1] gi|71730504|gb|EAO32583.1| Transcription-repair coupling factor [Xylella fastidiosa Ann-1] Length = 1195 Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 141/431 (32%), Positives = 229/431 (53%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W+ R+ +A ++ + R+Q + G+ + ++ + + PF T Q Sbjct: 599 QWSKAKRKAAEKVRDVAAELLEIQARRQARA--GLALRIDRTMYEPFAAGFPFEETPDQL 656 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI+ L+D+ M R++ GDVG GKT VA+ A AA AG Q ++ P +LA+QHY Sbjct: 657 AAIETTLRDLQSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVLVPTTLLAEQHY 716 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + I VE+++ + L++++ G +I+GTH L Q +++ L LV Sbjct: 717 RNFRDRFADYPIRVEVLSRFKSTKEIKAELQKVSEGIMDVIVGTHRLLQPDVKFKDLGLV 776 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+Q+ L H+L +TATPIPRTL + G D+S I P R + Sbjct: 777 IVDEEQRFGVRQKEALKSLRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPLNRLAV 836 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVERFNSLHEHF 514 +T I P + + E +R L+ G + Y++ +E + + + +V Sbjct: 837 QTFITPWDNALLHEAFQR---ELARGGQLYFLHNDVESIGRMQRDLAQLVPE-------- 885 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + I I HG+M + + E VM F+ +L++TT+IE GID+ +A+ III A+ FGLA Sbjct: 886 -ARIGIAHGQMPERELERVMLDFQKQHFNVLLSTTIIESGIDIPNANTIIINRADRFGLA 944 Query: 575 QLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629 QLHQLRGRVGR + L+ ++ ++ RL + + ++ GF +A DL+ R Sbjct: 945 QLHQLRGRVGRSHHRAYAYLVVPDRRSMTADAEKRLEAIASMDELGAGFTLATHDLEIRG 1004 Query: 630 EGEILGIKQSG 640 GE+LG QSG Sbjct: 1005 AGELLGEDQSG 1015 >gi|83942375|ref|ZP_00954836.1| transcription-repair coupling factor [Sulfitobacter sp. EE-36] gi|83846468|gb|EAP84344.1| transcription-repair coupling factor [Sulfitobacter sp. EE-36] Length = 1162 Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 138/413 (33%), Positives = 227/413 (54%), Gaps = 24/413 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P++ T Q +AI D+L D++ N M R++ GDVG GKT VA+ A A +G Q I+AP Sbjct: 602 PYTETDDQLNAISDVLDDLTSGNPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAIVAP 661 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHY+ + + + V ++ + + I G +++GTHAL + Sbjct: 662 TTLLARQHYKSFAERFRGFPLEVRQLSRFVSAKEATATRDGINRGTVDVVVGTHALLAKT 721 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +++ L L+I+DE+ FGV + +L T HVL +TATPIPRTL L+ G D+S I Sbjct: 722 VKFKNLGLLIIDEEQHFGVGHKERLKAMRTDIHVLTLTATPIPRTLQLSLTGVRDLSIIG 781 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R I+T ++ D V R + +L E G +++++ P+I + E +E Sbjct: 782 TPPVDRLAIRTY---VSEFDAVTLR-EALLREHYRGGQSFYVVPRITDLPE------IEA 831 Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 F L E + + HG+M+ + + M++F +G +L+ATT++E G+D+ A+ +I+ Sbjct: 832 F--LKEQLPELTYLVAHGQMAAGELDDRMNAFYDGKYDILLATTIVESGLDIPTANTMIV 889 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 A+ FGLAQL+Q+RGRVGR + + L P L+ + RL VL + + GF + Sbjct: 890 HRADMFGLAQLYQIRGRVGRSKTRAYAYLTTKPRAKLTATAEKRLRVLGSLDTLGAGFTL 949 Query: 621 AEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQD 670 A +DL R G +LG +QSG + F + Q L D++ +I + + ++ D Sbjct: 950 ASQDLDIRGAGNLLGEEQSGQMRDVGFELYQSMLEDAIAKIKSGELEGVIDDD 1002 >gi|83953596|ref|ZP_00962317.1| transcription-repair coupling factor [Sulfitobacter sp. NAS-14.1] gi|83841541|gb|EAP80710.1| transcription-repair coupling factor [Sulfitobacter sp. NAS-14.1] Length = 1162 Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 138/413 (33%), Positives = 227/413 (54%), Gaps = 24/413 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P++ T Q +AI D+L D++ N M R++ GDVG GKT VA+ A A +G Q I+AP Sbjct: 602 PYTETDDQLNAISDVLDDLTSGNPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAIVAP 661 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHY+ + + + V ++ + + I G +++GTHAL + Sbjct: 662 TTLLARQHYKSFAERFRGFPLEVRQLSRFVSAKEATATRDGINRGTVDVVVGTHALLAKT 721 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +++ L L+I+DE+ FGV + +L T HVL +TATPIPRTL L+ G D+S I Sbjct: 722 VKFKNLGLLIIDEEQHFGVGHKERLKAMRTDIHVLTLTATPIPRTLQLSLTGVRDLSIIG 781 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R I+T ++ D V R + +L E G +++++ P+I + E +E Sbjct: 782 TPPVDRLAIRTY---VSEFDAVTLR-EALLREHYRGGQSFYVVPRITDLPE------IEA 831 Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 F L E + + HG+M+ + + M++F +G +L+ATT++E G+D+ A+ +I+ Sbjct: 832 F--LKEQLPELTYLVAHGQMAAGELDDRMNAFYDGKYDILLATTIVESGLDIPTANTMIV 889 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 A+ FGLAQL+Q+RGRVGR + + L P L+ + RL VL + + GF + Sbjct: 890 HRADMFGLAQLYQIRGRVGRSKTRAYAYLTTKPRAKLTATAEKRLRVLGSLDTLGAGFTL 949 Query: 621 AEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQD 670 A +DL R G +LG +QSG + F + Q L D++ +I + + ++ D Sbjct: 950 ASQDLDIRGAGNLLGEEQSGQMRDVGFELYQSMLEDAIAKIKSGELEGVIDDD 1002 >gi|295401980|ref|ZP_06811942.1| transcription-repair coupling factor [Geobacillus thermoglucosidasius C56-YS93] gi|312109202|ref|YP_003987518.1| transcription-repair coupling factor [Geobacillus sp. Y4.1MC1] gi|294975982|gb|EFG51598.1| transcription-repair coupling factor [Geobacillus thermoglucosidasius C56-YS93] gi|311214303|gb|ADP72907.1| transcription-repair coupling factor [Geobacillus sp. Y4.1MC1] Length = 1177 Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 135/381 (35%), Positives = 207/381 (54%), Gaps = 23/381 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q +I++I +DM M R+L GDVG GKT VAL A A+ G Q + P Sbjct: 621 PYQETEDQLRSIEEIKRDMESDKPMDRLLCGDVGYGKTEVALRAAFKAIMDGKQVAFLVP 680 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHYE +++ Q I V ++ + + + ++ + G ++IGTH L Sbjct: 681 TTILAQQHYETVRERFQGFPITVGLLNRFRTRKQQAETIKGLKDGTIDMVIGTHRLLSKD 740 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +Q+ L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ +G D+S I Sbjct: 741 VQFKDLGLLIIDEEQRFGVTHKEKIKQLKANIDVLTLTATPIPRTLHMSMIGVRDLSIIE 800 Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEE---KKESNFRSVV 504 P R P++T ++ + E IER L+ + +++ IE+ K E + V Sbjct: 801 TPPENRFPVQTYVMEYTPELVREAIER---ELAREGQVFFLYNHIEDIDVKAEEISQLVP 857 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 E + + +HGRMS+ + ES M +F G +L+ TT+IE G+D+ + + +I Sbjct: 858 E----------ARVTYVHGRMSETELESTMLAFLEGQYDVLVTTTIIETGVDIPNVNTLI 907 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFL 619 + +A+ GL+QL+QLRGRVGR ++ Y L++ + RL +K TE GF Sbjct: 908 VYDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLNEAAEKRLQAIKEFTELGSGFK 967 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 IA DL R G ILG +Q G Sbjct: 968 IAMRDLSIRGAGNILGAEQHG 988 >gi|251794075|ref|YP_003008806.1| transcription-repair coupling factor [Paenibacillus sp. JDR-2] gi|247541701|gb|ACS98719.1| transcription-repair coupling factor [Paenibacillus sp. JDR-2] Length = 1175 Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 131/378 (34%), Positives = 210/378 (55%), Gaps = 17/378 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q AI++I +DM + M R+L GDVG GKT VA+ A A G Q I+ P Sbjct: 609 PYDETRDQLRAIEEIKKDMQKPQPMDRLLCGDVGYGKTEVAVRAAFKAAIEGKQVAILVP 668 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHYE ++ +++++ + + ++ + G ++IGTH L Sbjct: 669 TTILAQQHYETFRERFSGYPFNIQVLSRFRSRKEQNDTMKGLKAGTVDVVIGTHRLLSQD 728 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+IVDE+ RFGV + KL + T VL +TATPIPRTL ++ LG D+S I Sbjct: 729 VIFKDLGLLIVDEEQRFGVSHKEKLKKLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIE 788 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R P++T ++ + + E IER L+ G + Y++ +++ + E+ Sbjct: 789 TPPENRFPVQTYVVEYSTSLVREAIER---ELARGGQVYYLYNRVQ-----GIYQMAEQI 840 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 N+L + +A+ HG+MS+ + E + F +G +L++T++IE G+D+ + + +I+ + Sbjct: 841 NALVPD--AKVAVGHGQMSEQELEKTILDFLDGESDVLVSTSIIETGVDIPNVNTLIVHD 898 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622 A+ GL+QL+QLRGRVGR I+ Y L++ + RL +K TE GF IA Sbjct: 899 ADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAM 958 Query: 623 EDLKQRKEGEILGIKQSG 640 DL R G +LG +Q G Sbjct: 959 RDLSIRGAGNLLGAEQHG 976 >gi|167753145|ref|ZP_02425272.1| hypothetical protein ALIPUT_01416 [Alistipes putredinis DSM 17216] gi|167659459|gb|EDS03589.1| hypothetical protein ALIPUT_01416 [Alistipes putredinis DSM 17216] Length = 1110 Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 138/410 (33%), Positives = 218/410 (53%), Gaps = 18/410 (4%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 IAL RK K G + + + Q++ + + T Q++A + + +DM M R+ Sbjct: 522 IALYAKRKASK---GFAFSPDTYLQQELEASFMWEDTPDQQTATQAVKRDMESNQPMDRL 578 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 + GDVG GKT VA+ A A G Q ++ P ILA QHY ++ + VE + Sbjct: 579 ICGDVGFGKTEVAIRAAFKAATDGKQVAVLVPTTILALQHYRSFVHRLRDFPVKVEYLNR 638 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 + L +A G+ I+IGTH + ++++ L L+I+DE+ +FGV + KLTQ Sbjct: 639 TKSSKETSRILSELAEGRIDILIGTHKILGKQVKFHDLGLLIIDEEQKFGVAAKEKLTQM 698 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLK 476 + L +TATPIPRTL + +G D+S I+ P R+PI T + +E+I + + Sbjct: 699 SVNVDTLTLTATPIPRTLQFSLMGSRDLSVISTPPPNRQPIITESHLFS--EEIIRDAVN 756 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 L G + Y++ ++E+ + +V R + + I HG+M E ++ Sbjct: 757 AELDRGGQVYFVHNRVEDLM--TLQGMVTRLCP-----RARVGIGHGKMPAEQLEKLIMD 809 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F G +LI+TT++E GID+ +A+ II+ NA++FGL+ LHQLRGRVGRG + C LL Sbjct: 810 FIYGEFDVLISTTIVENGIDIPNANTIIVNNAQNFGLSDLHQLRGRVGRGSQRGYCYLLS 869 Query: 597 --HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 L+ ++ RL ++ D GF IA +DL R G +LG +QSG Sbjct: 870 PGDELLTPDARRRLRAIEEFSDLGSGFNIAMQDLDIRGAGNLLGAEQSGF 919 >gi|114800270|ref|YP_760685.1| transcription-repair coupling factor [Hyphomonas neptunium ATCC 15444] gi|114740444|gb|ABI78569.1| transcription-repair coupling factor [Hyphomonas neptunium ATCC 15444] Length = 1145 Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 142/406 (34%), Positives = 223/406 (54%), Gaps = 31/406 (7%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 P+ T Q SAI+D+L D+S M R++ GDVG GKT VAL A A +G Q ++A Sbjct: 558 FPYEETDDQLSAIEDVLGDLSSGKPMDRLVCGDVGFGKTEVALRAAFVAAMSGKQVAVIA 617 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIIT---GNMPQAHRRKALERIAHGQAHIIIGTHAL 385 P +LA+QH++ ++ + V ++ G A R L A G +++GTHA+ Sbjct: 618 PTTLLARQHFKTFEERFAGWPLKVRALSRFVGAREAAETRDGL---ASGSVDVVVGTHAV 674 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445 + + +L L+IVDE+ RFGV+ + +L + + HVL ++ATPIPRTL + G D+ Sbjct: 675 LSKDMNFKRLGLMIVDEEQRFGVKHKERLKELKSDVHVLTLSATPIPRTLQMALTGIRDL 734 Query: 446 SKITEKPAGRKPIKTVIIPINRID--EVIERLKVVLSEGKKAYWICPQIEE-KKESNFRS 502 S I P R ++T I + + E + R K G +A+++ P+I + K NF Sbjct: 735 SIIATPPVDRLSVRTYITEEDTVTLREALLREKY---RGGQAFFVAPRITDLDKLENF-- 789 Query: 503 VVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 L H S + HG+M+ + E +M +F G +L++TT++E G+D+ A+ Sbjct: 790 -------LRTHVPEVSFIVAHGQMAAGELEDIMTAFYEGKYDVLLSTTIVESGLDIPRAN 842 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTED-- 616 +II A+ FGLAQL+QLRGRVGR ++ + P +++++ RL VL++ + Sbjct: 843 TLIIHRADMFGLAQLYQLRGRVGR-SKLRAYAYFTTPKDKVVTESAEKRLKVLQSLDSLG 901 Query: 617 -GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661 GF +A DL R G +LG +QSG K + EL+ S+LE A K Sbjct: 902 AGFQLASHDLDMRGAGNLLGDQQSGQVKEVGV--ELYQSMLEDAVK 945 >gi|320161444|ref|YP_004174668.1| transcription-repair coupling factor [Anaerolinea thermophila UNI-1] gi|319995297|dbj|BAJ64068.1| transcription-repair coupling factor [Anaerolinea thermophila UNI-1] Length = 1129 Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 148/437 (33%), Positives = 232/437 (53%), Gaps = 33/437 (7%) Query: 219 EWTSPARERLAYDEL-LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EW S ++R+ L +A ++ L ++Q K G + + +++ + P+ T+ Q Sbjct: 528 EWAS-VKQRVRESVLEVAQELLELYAKRQVAK--GHAFSPDTMWQKELEASFPYIETEDQ 584 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 AI+ + +DM + M R+L GDVG GKT VAL A AV G Q ++ P +LAQQH Sbjct: 585 IKAIQAVKRDMERPRPMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVAMLVPTTVLAQQH 644 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 +E ++ ++VE+++ + + L+++ G IIIGTH L Q + + L L Sbjct: 645 FETFRQRLAPFPVMVEMLSRFRTPKEQERILQQLREGTVDIIIGTHRLLQPDVAFKDLGL 704 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI+DE+ RFGV + + T VL +TATPIPRTL + G DIS+I PA R P Sbjct: 705 VIIDEEQRFGVTHKEYFKKLRTEVDVLTLTATPIPRTLYMALTGVRDISQINTPPAERLP 764 Query: 458 IKTVIIPINRIDEVIERL--KVVLSEGKKAYWICPQIEEKKESNF-RSVVERFNSLHEHF 514 I T I P + RL + +L E IE + F + V+ +++ +H Sbjct: 765 IITHIGPYS------PRLVRQAILRE----------IERGGQVFFVHNRVQTIHAMEQHL 808 Query: 515 T-----SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 + I I HG+M + VM +F G +L+ T++IE G+D+ +A+ +I++ + Sbjct: 809 QKLVPEARIGIAHGQMPEEALSRVMMAFTRGELDVLLCTSIIESGLDIPNANTLIVDRGD 868 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVL-KNTE--DGFLIAEED 624 FGLAQL+QLRGRVGRG + + H + RL ++ +NT+ G+ IA D Sbjct: 869 TFGLAQLYQLRGRVGRGAQRAYAYFFRHRRKAPTPEGQERLEIIAENTQLGSGYSIAMRD 928 Query: 625 LKQRKEGEILGIKQSGM 641 L+ R GE+LG +Q GM Sbjct: 929 LEMRGAGELLGTRQHGM 945 >gi|289667201|ref|ZP_06488276.1| transcription-repair coupling factor [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 1154 Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 140/381 (36%), Positives = 206/381 (54%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q +AI L+D+ M R++ GDVG GKT VA+ A AA AG Q ++ Sbjct: 604 GFPFEETPDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVL 663 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LA+QHY + + I VE+++ + LE++A G +IIGTH L Q Sbjct: 664 VPTTLLAEQHYRNFRDRFADYPIKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRLLQ 723 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++ L LV+VDE+ RFGV+Q+ L H+L +TATPIPRTL + G D+S Sbjct: 724 PDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSI 783 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R ++T I + + E +R LS G + Y++ +E S+V Sbjct: 784 IATPPPNRLAVQTFITAWDNTLLREAFQR---ELSRGGQLYFLHNDVE--------SIVR 832 Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 L E + I I HG+M + + E VM F+ +L++TT+IE GID+ +A+ II Sbjct: 833 MQRDLSELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTII 892 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619 I A+ FGLAQLHQLRGRVGR + L+ ++ ++ RL + + ++ GF Sbjct: 893 INRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEAIASMDELGAGFT 952 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG QSG Sbjct: 953 LATHDLEIRGAGELLGEDQSG 973 >gi|51473776|ref|YP_067533.1| transcription-repair coupling factor [Rickettsia typhi str. Wilmington] gi|81856448|sp|Q9AKD5|MFD_RICTY RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|13235382|emb|CAC33732.1| Mfd protein [Rickettsia typhi] gi|51460088|gb|AAU04051.1| transcription-repair coupling factor (superfamily helicase II) [Rickettsia typhi str. Wilmington] Length = 1120 Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 147/441 (33%), Positives = 239/441 (54%), Gaps = 39/441 (8%) Query: 237 QIALLLMRKQFKKEIGI--PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 +I+L L++ K+++ I PI + + K N PF T+ Q +AI DI +D++ M Sbjct: 539 EISLHLIQIAAKRKLNISTPIEFDLEEYDKFCANFPFIETEDQLTAINDIRKDLTNGMLM 598 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHY----EFIKKYTQ 346 R++ GDVG GKT VA+ A+ ++ Q ++ P IL QH+ E K + Sbjct: 599 DRLICGDVGFGKTEVAMRAVFMVAKSLNEYLPQVAVVVPTTILCSQHFSRFIERFKGFGL 658 Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 N + + +++ R + +A G+ +IIIGTH L +I+++ L L+I+DE+ F Sbjct: 659 NIKQLSSVVSSQEANIIRLE----LASGKINIIIGTHTLLHKNIKFFNLKLLIIDEEQHF 714 Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466 GV Q+ L + HVL M+ATPIPRTL ++ G ++S I P R ++T ++P Sbjct: 715 GVSQKEFLKSLKYSSHVLAMSATPIPRTLQMSLTGLKELSIIATPPLNRLEVRTSVMP-- 772 Query: 467 RIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAII 521 D VI R +L E G +++++ P+I+ E E + +V S I Sbjct: 773 -FDTVIIR-DALLREHFRGGRSFYVVPRIKDMEDIEKQLKQIVPEL---------SYKIA 821 Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581 HG+M+ + VM F G +LI+TT+IE GID+ +A+ +II NA+ GL+QL+QLRG Sbjct: 822 HGKMTPSKIDEVMSEFYAGKFDILISTTIIESGIDITEANTMIIHNADTLGLSQLYQLRG 881 Query: 582 RVGRGE--EISSCILLYHPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGI 636 R+GRG+ + + + L ++S RL +++N+ GF IA D R G ++G Sbjct: 882 RIGRGKIRGYAYLTVASNKKLMQHSLRRLEIIQNSCALGSGFTIASHDADLRGFGNLIGE 941 Query: 637 KQSGMPKFLIAQPELHDSLLE 657 +QSG + + A EL+ +LE Sbjct: 942 EQSGQIREVGA--ELYQEMLE 960 >gi|332885155|gb|EGK05406.1| hypothetical protein HMPREF9456_02607 [Dysgonomonas mossii DSM 22836] Length = 1108 Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 134/378 (35%), Positives = 206/378 (54%), Gaps = 17/378 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T Q A D+ DM M R++ GDVG GKT V++ A AV Q ++ P Sbjct: 547 YEDTPDQVKATADVKLDMENSKPMDRLICGDVGFGKTEVSIRAAFKAVTDNKQVAVLVPT 606 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA QHY+ K+ ++ VE I+ ++ + + G+ I+IGTH + I Sbjct: 607 TVLAYQHYQTFKERLKDFPCRVEYISRARSAGQIKEVINDLKEGKVDILIGTHRIVGKDI 666 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 Q+ L L+I+DE+ +FGV + KL Q + L MTATPIPRTL + +G D+S IT Sbjct: 667 QFKDLGLLIIDEEQKFGVAVKEKLKQMKSNVDTLTMTATPIPRTLQFSLMGARDLSAITT 726 Query: 451 KPAGRKPIKTVIIPINRIDEVI--ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R PI+T ++ D +I E ++ +S + ++I +I+ E +++R Sbjct: 727 PPPNRYPIQT---EVHTFDPLIIREAIEFEMSRNGQVFFINNRIKSIHE--LEDIIKR-- 779 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 E + IA+ HG+M ES++ F N +L+AT+++E GID+ +A+ III NA Sbjct: 780 ---EVPDARIAVGHGQMDPAKLESIIIDFVNQEYDVLLATSIVESGIDIPNANTIIINNA 836 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623 ++FGL+ LHQLRGRVGR + + LL P L+ + RL ++N + GF IA + Sbjct: 837 QNFGLSDLHQLRGRVGRSNKKAFAYLLAPPLHTLTPEARRRLQAIENFSELGHGFHIAMQ 896 Query: 624 DLKQRKEGEILGIKQSGM 641 DL R G +LG +QSG Sbjct: 897 DLDIRGAGNLLGAEQSGF 914 >gi|332829530|gb|EGK02179.1| hypothetical protein HMPREF9455_01813 [Dysgonomonas gadei ATCC BAA-286] Length = 1108 Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 137/409 (33%), Positives = 217/409 (53%), Gaps = 17/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + + ++E G + + + ++ + + T Q A D+ QDM M R++ Sbjct: 517 LIQLYAKRRQEEGFKFSPDSFLQHELEASFIYEDTPDQVKATADVKQDMENSKPMDRLIC 576 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ AV Q ++ P +LA QHY+ ++ ++ VE I+ Sbjct: 577 GDVGFGKTEVAIRGAFKAVSDNKQVAVLVPTTVLAYQHYQTFRERLKDFPCRVEYISRAR 636 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 ++ L + G+ ++IGTH + IQ+ L L+I+DE+ +FGV + KL Q + Sbjct: 637 SANQIKETLNDLKEGKVDVLIGTHRIVSKDIQFKDLGLLIIDEEQKFGVAVKEKLKQMKS 696 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI--ERLKV 477 L MTATPIPRTL + +G D+S IT P R PI+T ++ D I E ++ Sbjct: 697 NVDTLTMTATPIPRTLQFSLMGARDLSAITTPPPNRYPIQT---EVHTFDPHIIREAIEF 753 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537 +S + ++I +I+ E ++ R E + + + HG+M ESV+ F Sbjct: 754 EMSRNGQVFFINNRIKNIYE--LEDIIRR-----EVPDARVVVGHGQMDPAKLESVIIDF 806 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 N +LIAT++IE GID+ +A+ II+ NA++FGL+ LHQLRGRVGR + + LL Sbjct: 807 VNHEYDVLIATSIIESGIDIPNANTIIVNNAQNFGLSDLHQLRGRVGRSNKKAFAYLLAP 866 Query: 598 P--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 P L+ + RL ++N + GF IA +DL R G +LG +QSG Sbjct: 867 PLHTLTPEARRRLQAIENFSELGHGFHIAMQDLDIRGAGNLLGAEQSGF 915 >gi|241896607|ref|ZP_04783903.1| transcription-repair coupling factor [Weissella paramesenteroides ATCC 33313] gi|241870088|gb|EER73839.1| transcription-repair coupling factor [Weissella paramesenteroides ATCC 33313] Length = 1166 Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 135/382 (35%), Positives = 208/382 (54%), Gaps = 25/382 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q ++K+I DM + M R+L GDVG GKT VA+ A A G Q ++ P Sbjct: 617 PYPETPDQIRSVKEIKADMEKSRPMDRLLVGDVGFGKTEVAMRAAFKAAHEGKQVAMLVP 676 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH----IIIGTHAL 385 ILAQQHY+ + T + + M + +K + I G + I+IGTH+L Sbjct: 677 TTILAQQHYDSFLNRFEGTNLKI----AWMSRFQTKKQMTEIKTGLKNHTIDIVIGTHSL 732 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445 + + L L+I+DE+ RFGV+ + +L T VL +TATPIPRTL + +G D+ Sbjct: 733 LAKDVAFGDLGLLIIDEEQRFGVKHKERLKSLQTNVDVLTLTATPIPRTLNMAMVGVRDL 792 Query: 446 SKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503 S I PA R PI+T ++ N I IER ++ G + +++ ++ ++ V Sbjct: 793 SVIETPPANRYPIQTYVMEQNGRVIANAIER---EMARGGQTFYLHNRV-----ADIEKV 844 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 SL + +A IHG+M++ E ++ F NG +L+ TT+IE G+D+ +A+ + Sbjct: 845 AGMIQSLVPE--AQVAYIHGQMTETQMEGILVDFINGEYDVLVTTTIIETGVDIPNANTL 902 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGF 618 +ENA++ GLAQL+QLRGRVGR ++ Y L++ S RL+ +++ TE GF Sbjct: 903 FVENADYMGLAQLYQLRGRVGRSNNVAYAYFTYPGTRSLNEESEKRLTAIRDFTELGSGF 962 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 IA DL R G++LG Q G Sbjct: 963 KIAMRDLSIRGAGDLLGQSQHG 984 >gi|254420843|ref|ZP_05034567.1| transcription-repair coupling factor [Brevundimonas sp. BAL3] gi|196187020|gb|EDX81996.1| transcription-repair coupling factor [Brevundimonas sp. BAL3] Length = 1156 Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 152/455 (33%), Positives = 245/455 (53%), Gaps = 35/455 (7%) Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281 S A+ERL + G IAL R + + +P G A+ R P+ T Q +AI Sbjct: 564 SKAKERLR--AMAEGLIALAAKRALRETDAVVP--PPGLFAEFCAR-FPYEETDDQLNAI 618 Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-F 340 D+L+D+ + M R++ GDVG GKT VAL A G Q I+AP +LA+QHY+ F Sbjct: 619 GDVLEDLGKGTPMDRLICGDVGFGKTEVALRAAFVVAMTGQQVAIVAPTTLLARQHYKTF 678 Query: 341 IKKYTQNTQIIVEI--ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 +++ + ++ + G + R L+ G I++GTHA+ + + + L LV Sbjct: 679 TERFAGWPVKVRQLSRMVGGKEASETRAGLK---DGSVEIVVGTHAVLSEQVGFRDLGLV 735 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ FGV+ + KL H+L +TATPIPRTL + G ++S I P R + Sbjct: 736 IVDEEQHFGVKHKEKLKSLRADVHLLTLTATPIPRTLQMALSGIREMSIIATPPVDRLAV 795 Query: 459 KTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 +T + P D V+ R + +L E G +AY++ P++++ +E+F L E Sbjct: 796 RTYVTP---WDPVLVR-EALLREKYRGGQAYYVAPRLKDL------PAIEKF--LREQVP 843 Query: 516 S-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + HG+MS E VM +F +G +L++TT++E G+D+ A+ +++ A+ FGLA Sbjct: 844 EVKFVVGHGQMSATQLEEVMSAFYDGEYDVLVSTTIVESGLDIPTANTLVVHRADMFGLA 903 Query: 575 QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629 QL+Q+RGRVGR + + L P++ ++ RL VL++ ++ GF +A DL QR Sbjct: 904 QLYQIRGRVGRSKARAFAYLTTDAVKPMTLSAERRLQVLQSLDNLGAGFQLASHDLDQRG 963 Query: 630 EGEILGIKQSGMPKFL---IAQPELHDSLLEIARK 661 G +LG +QSG + + + Q L D++ E+ K Sbjct: 964 GGNLLGDEQSGHIREVGVELYQQMLEDAVAELREK 998 >gi|210623288|ref|ZP_03293705.1| hypothetical protein CLOHIR_01655 [Clostridium hiranonis DSM 13275] gi|210153689|gb|EEA84695.1| hypothetical protein CLOHIR_01655 [Clostridium hiranonis DSM 13275] Length = 1147 Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 141/429 (32%), Positives = 225/429 (52%), Gaps = 19/429 (4%) Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EWT + A+ R +++ I L R++ K G + + ++ P+ T Q Sbjct: 566 EWTKAKAKVRKEIEDMTEELINLYAKREKIK---GYKFSKDTVWQKEFEDKFPYQETDDQ 622 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 AIKD +DM M R++ GDVG GKT VA+ A A G Q ++ P ILAQQH Sbjct: 623 LKAIKDTKKDMESPRVMDRLICGDVGYGKTEVAIRAAFKACMDGKQVAVLVPTTILAQQH 682 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y + + I VE+++ ++K +E G ++IGTH + I+ KL L Sbjct: 683 YNTFSERFADYPIRVEVLSRFKTPKQQKKIIEDAKKGMVDVLIGTHRIISKDIELPKLGL 742 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 V++DE+ RFGV+ + L + VL ++ATPIPRTL ++ G D++ I E P R P Sbjct: 743 VVIDEEQRFGVKHKETLKKVKNTVDVLTLSATPIPRTLHMSLSGIRDMTVIEEPPQERHP 802 Query: 458 IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 + T + D +I + ++ +S G + +++ ++E + ++ L + Sbjct: 803 VITYVTEAR--DSIIQDEIEKEISRGGQVFFVYNRVE-----GIEGIADKVRKLVPD--A 853 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 +A+ HGRMS E ++ +F +L+ TT+IE G+D+ +A+ +II +A+ GLAQL Sbjct: 854 RVAVAHGRMSSKTLEDIIIAFMQKEFDVLVCTTIIETGMDIANANTMIIYDADKMGLAQL 913 Query: 577 HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631 +QLRGRVGR L+Y + LS+ + RL +K TE GF IA DL+ R G Sbjct: 914 YQLRGRVGRSTRQGYAFLMYERNKSLSEIAEKRLKAIKEFTEFGSGFKIAMRDLEIRGAG 973 Query: 632 EILGIKQSG 640 ++LG +Q G Sbjct: 974 DVLGAQQHG 982 >gi|126696368|ref|YP_001091254.1| transcriptional-repair coupling factor [Prochlorococcus marinus str. MIT 9301] gi|126543411|gb|ABO17653.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str. MIT 9301] Length = 1169 Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 132/425 (31%), Positives = 234/425 (55%), Gaps = 18/425 (4%) Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317 +G ++ + P+ PT Q +A+K+I DM M R++ GDVG GKT VA+ A+ A Sbjct: 599 DGPWQDELEESFPYQPTPDQITAVKEIKSDMESDKPMDRLVCGDVGFGKTEVAVRAIFKA 658 Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377 + +G Q + +AP ILAQQH+ I I V ++ RR+ + + + Sbjct: 659 ITSGKQVIFLAPTTILAQQHWRTINNRFSPYPIKVSLLNRFKSINERREIYAGLKNNKID 718 Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437 +++ TH + I+ L L+++DE+ RFGV+Q+ K+ + T VL ++ATPIPRTL + Sbjct: 719 LVVATHQILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKKIKTNIDVLTLSATPIPRTLYM 778 Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497 + G +S + P R+ IKT + I+ +D + + L G + +++ P+I Sbjct: 779 SLSGLRQMSLLNTPPPSRRSIKTYLSEID-MDVIRTAINKELDRGGQIFYVLPRI----- 832 Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557 S+ +++ ++ + +A HG+M++ + E+ M +F NG L+I TT+IE G+D+ Sbjct: 833 SDIDQAIDKLKNMIPNLKFIVA--HGQMNETELENAMIAFNNGEVDLMICTTIIESGLDI 890 Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK---NSYTRLSVLKNT 614 + IIIE++ FGL+QL+QLRGRVGR + + L++P ++K + RL +K+ Sbjct: 891 PKVNTIIIEDSHKFGLSQLYQLRGRVGRS-GVQAHAWLFYPNINKINDAAKQRLKAIKDF 949 Query: 615 ED---GFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILT 668 + G+ +A +D++ R G +LG +QSG + + LH+++ EI+ ++ + Sbjct: 950 SELGSGYQLAMKDMEIRGVGSLLGEEQSGKVNAIGYDLYIEMLHEAISEISGQEIPEVND 1009 Query: 669 QDPDL 673 DL Sbjct: 1010 TQIDL 1014 >gi|317495443|ref|ZP_07953812.1| transcription-repair coupling factor [Gemella moribillum M424] gi|316914502|gb|EFV35979.1| transcription-repair coupling factor [Gemella moribillum M424] Length = 1185 Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 144/409 (35%), Positives = 230/409 (56%), Gaps = 19/409 (4%) Query: 242 LMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L++ K+E+ G + + + Q+ + F PT Q A ++I +DM ++ M R+L Sbjct: 574 LIKLYIKRELSSGYAYSFDSSLQQEFEDDFSFIPTDDQLKATEEIKRDMEKQRPMDRLLC 633 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358 GDVG GKT VA+ AV Q ++ P +LA+QHYE F+ ++ N + +E+++ Sbjct: 634 GDVGFGKTEVAMRVAFKAVMDVKQVAVLVPTTLLAEQHYENFVNRFA-NFPVNIEVVSRF 692 Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418 + +R+ G+ IIIGTH L D +Y L L+I+DE+ RFGV+ + K+ Sbjct: 693 KSAKDITEICKRLREGKIDIIIGTHKLLNDKFKYKDLGLLIIDEEQRFGVKHKEKIKHLK 752 Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 VL ++ATPIPRTL ++ +G D+S I P+ R+PI+T + N + V E + Sbjct: 753 NTIDVLTLSATPIPRTLHMSLIGIRDLSVIETPPSERQPIQTFVTAQNNM-IVKEAIMNE 811 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537 +S G + +++ +++ S+ E++ L +IA HGRM+ + ES+M Sbjct: 812 VSRGGQVFYVYNRVD--------SIDEKYLELKRLLPDINIAYAHGRMTQRELESIMSDV 863 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 + LLI TT+IE GID+ + + +I+E+A+ FGL+QL+QLRGRVGR + L+Y Sbjct: 864 IDRKYDLLITTTIIETGIDISNVNTLIVEDADRFGLSQLYQLRGRVGRSSREAYAYLMYQ 923 Query: 598 P--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGM 641 P L++NS RLS +KN GF IA +DL R G++LG +Q G Sbjct: 924 PFKALTENSEKRLSAIKNFTTLGSGFKIAMQDLSIRGAGDVLGGRQHGF 972 >gi|297243627|ref|ZP_06927558.1| transcription-repair coupling factor [Gardnerella vaginalis AMD] gi|296888378|gb|EFH27119.1| transcription-repair coupling factor [Gardnerella vaginalis AMD] Length = 1202 Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 136/428 (31%), Positives = 224/428 (52%), Gaps = 17/428 (3%) Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 +W + A+ + E+ I L R+Q + G + + +++ P+ T Q Sbjct: 607 DWAQTKAKAKKHVHEIAENLIKLYSARQQSR---GFAFSKDTPWQKELEDAFPYQETADQ 663 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + I ++ DM + M R++ GDVG GKT +AL A AV+ Q V++ P +L QQH Sbjct: 664 LTTIDEVKADMEKPIPMDRLICGDVGFGKTEIALRAAFKAVQDSKQVVVLVPTTLLVQQH 723 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 YE + + V ++ + L + G ++IGTH L SI++ L L Sbjct: 724 YETFTNRFEGFPVKVAAMSRFQTSKEIEETLAGLQDGSIDVVIGTHKLLNPSIKFKDLGL 783 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI+DE+ RFGV+ + L T VL ++ATPIPRTL + G ++S + P R P Sbjct: 784 VIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP 843 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517 + T + + +V +K L G + +++ ++E + SV + L Sbjct: 844 VLTYVGAYDN-SQVAACIKRELLRGGQVFYVHNRVE-----DISSVASKIQELVPDV--R 895 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 +AI HG+M + ++V+ F + +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLH Sbjct: 896 VAIAHGKMGEKQLDAVIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLH 955 Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632 QLRGRVGRG E + LY P P+++ S+ RLS + GF +A +DL+ R G Sbjct: 956 QLRGRVGRGHERAYAYFLYDPSKPMTQQSHDRLSTIAQHTALGSGFDVAMKDLELRGTGN 1015 Query: 633 ILGIKQSG 640 +LG +QSG Sbjct: 1016 LLGDEQSG 1023 >gi|326334855|ref|ZP_08201056.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692892|gb|EGD34830.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 1108 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 144/443 (32%), Positives = 233/443 (52%), Gaps = 20/443 (4%) Query: 237 QIA--LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 QIA L+ + + K+ +G + + +++ + + T Q A ++ QDM M Sbjct: 515 QIAFNLIQLYAKRKESVGYAFAPDSFLQKELEASFIYEDTPDQSKATLEVKQDMESARPM 574 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R++ GDVG GKT VA+ A AV+ Q ++ P ILA QHY+ + + VE Sbjct: 575 DRLVCGDVGFGKTEVAIRAAFKAVDNSKQVAVLVPTTILAFQHYQTFCDRLKGLPVRVEY 634 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 + + + L +A G+ I+IGTH + + ++Y L L+I+DE+ +FGV + KL Sbjct: 635 LNRFRTAKEKNQVLTDLALGKIDILIGTHQIVNEKVKYKDLGLLIIDEEQKFGVAVKDKL 694 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 VL +TATPIPRTL + + D+S IT P R PI++ +I + + + + Sbjct: 695 KTLRENIDVLTLTATPIPRTLQFSLMAARDLSVITTPPPNRYPIESQVITFSE-EAIRDA 753 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534 + L G + ++I ++E KE +++R + I I HG+M E VM Sbjct: 754 ISYELQRGGQVFFIHNRVENIKE--VAGMIQRLVP-----DARIGIGHGQMEGKALEEVM 806 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 +F NG +L+ATT+IE G+DV +A+ I I NA+HFGL+ LHQ+RGRVGR + + C Sbjct: 807 LAFINGDYDILVATTIIESGLDVPNANTIFIHNAQHFGLSDLHQMRGRVGRSNKKAFCYF 866 Query: 595 LYHPPLS---KNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK---FL 645 + P LS ++S R+ + D G IA +DL+ R G++LG +QSG F Sbjct: 867 I-TPNLSELPEDSRKRIQAIAQFSDLGSGIQIAMKDLEIRGAGDLLGGEQSGFINDIGFD 925 Query: 646 IAQPELHDSLLEIARKDAKHILT 668 Q L ++++E+ + + T Sbjct: 926 AYQKILQEAVMELKENEFASLYT 948 >gi|302336465|ref|YP_003801672.1| transcription-repair coupling factor [Olsenella uli DSM 7084] gi|301320305|gb|ADK68792.1| transcription-repair coupling factor [Olsenella uli DSM 7084] Length = 1171 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 131/384 (34%), Positives = 204/384 (53%), Gaps = 15/384 (3%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q++ + P+ T Q AI DI DM M R+L GDVG GKT VAL A + Sbjct: 621 QEMESSFPYEVTIDQARAIADIKADMEASKPMDRLLCGDVGFGKTEVALRAAFKCCQDAR 680 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381 Q +++ P ILAQQH+E F ++ + V++++ + A +R+ALE A G ++IG Sbjct: 681 QVMVLCPTTILAQQHFETFFSRFVP-FDLSVKVLSRFVTPAQQRRALEGFAKGTVDVLIG 739 Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441 TH L + + L LVI+DE+ RFGVQ + +L VL ++ATPIPRT+ + G Sbjct: 740 THRLLSSDVNPHDLGLVIIDEEQRFGVQHKEQLKNMREQVDVLTLSATPIPRTMQMAMSG 799 Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D+S I P GR P++ + + D V E ++ L + Y++ ++ + Sbjct: 800 VRDMSLILTPPPGRLPVRVTVGEWD-PDLVSEAIRAELGREGQVYYVSNRV-----TTIE 853 Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 VER + + + HG+MS E +M +F +L+ATT+IE GID + Sbjct: 854 DAVERVREAAPE--ARVGVAHGKMSATQAEDIMLAFSEHEIDVLVATTIIESGIDNPHTN 911 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED--- 616 +IIE+++ GLAQL+QL+GRVGRG + ++ PL+ + RL+ + +D Sbjct: 912 TLIIEDSQRLGLAQLYQLKGRVGRGRTQAYAYFMFPGELPLTPEATDRLTAINEYQDLGS 971 Query: 617 GFLIAEEDLKQRKEGEILGIKQSG 640 G IA DL+ R G ++G +Q G Sbjct: 972 GMRIAMRDLEIRGAGSLMGAEQHG 995 >gi|296131721|ref|YP_003638968.1| transcription-repair coupling factor [Thermincola sp. JR] gi|296030299|gb|ADG81067.1| transcription-repair coupling factor [Thermincola potens JR] Length = 1178 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 140/409 (34%), Positives = 226/409 (55%), Gaps = 21/409 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q AIK+I +DM + M R+L GDVG GKT VA+ A AV Q ++ P Sbjct: 629 PYEETPDQLRAIKEIKEDMERPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDSRQVAVLVP 688 Query: 330 IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 ILAQQHY F+++++ I +E+++ +++ L+ + G I+IGTH L Q+ Sbjct: 689 TTILAQQHYNTFVERFS-GYPIKIEMLSRFRSPKEQQEILKNLKTGGVDIVIGTHRLVQN 747 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 +Q+ KL LVIVDE+ RFGV + +L Q VL +TATPIPRTL ++ +G D+S + Sbjct: 748 DVQFKKLGLVIVDEEQRFGVAHKERLKQLRKNVDVLTLTATPIPRTLHMSLVGVRDMSIL 807 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--SNFRSVVER 506 P R P++T ++ N D + + ++ + G + Y++ +I + + + R+ V Sbjct: 808 ETPPEDRWPVQTYVLEFN-WDVIGDAVRKEMDRGGQVYFVHNRIMDIDQIAAQLRAAVPE 866 Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 + +A+ HG+M + E VM F G +L+ TT+IE G+D+ + + +I++ Sbjct: 867 ---------ARVAVAHGQMKEDQLEQVMLEFLEGEYDVLLCTTIIETGLDIPNVNTLIVD 917 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIA 621 A+ GL+QL+QLRGRVGR ++ Y L++ + RL ++ TE GF IA Sbjct: 918 EADRMGLSQLYQLRGRVGRSHRLAYAYFTYRRDKVLTEVAEKRLQAIREFTEFGSGFKIA 977 Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670 DL+ R G LG +Q G + +++ LLE A K+ K L ++ Sbjct: 978 MRDLEIRGAGNFLGPEQHG--HMMAVGFDMYCRLLEEAVKELKGDLIEE 1024 >gi|302877849|ref|YP_003846413.1| transcription-repair coupling factor [Gallionella capsiferriformans ES-2] gi|302580638|gb|ADL54649.1| transcription-repair coupling factor [Gallionella capsiferriformans ES-2] Length = 1134 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 138/377 (36%), Positives = 202/377 (53%), Gaps = 17/377 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q +AI +++D+ M R++ GDVG GKT VAL A AV G Q ++ P Sbjct: 591 FEETPDQAAAINAVIEDLQSGKPMDRLICGDVGFGKTEVALRAAFVAVMDGKQVAVLVPT 650 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA+QHY+ + I + ++ + +AL+ +A G+ IIIGTH L Q I Sbjct: 651 TLLAEQHYQNFSTRFADWPIRIGELSRFRSAKEQTQALKEMAEGKLDIIIGTHKLIQKGI 710 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L L+I+DE+HRFGVQQ+ +L +L +TATPIPRTL ++ G D S I Sbjct: 711 EFDNLGLLIIDEEHRFGVQQKERLKALRAEVDILTLTATPIPRTLAMSLEGLRDFSIIAT 770 Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R IKT + ++ I E + R L G + Y++ +++ ++ E+ Sbjct: 771 APQRRLSIKTFVSAYSQGVIREAVLR---ELKRGGQVYFLHNEVD-----TIANMAEKLT 822 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 L + I HG+M + + E+VM F +L+ TT+IE GIDV A+ II+ A Sbjct: 823 ELLPE--ARIRTAHGQMGERELEAVMRDFYQQRFNILLCTTIIETGIDVPTANTIIMNRA 880 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEE 623 + FGLAQLHQLRGRVGR + LL L+ + RL ++ E GF +A Sbjct: 881 DRFGLAQLHQLRGRVGRSHHQAYAYLLVDSLDGLTVQAKKRLEAIQAMEQLGSGFFLAMH 940 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R GE+LG QSG Sbjct: 941 DLEIRGAGEVLGESQSG 957 >gi|328956088|ref|YP_004373421.1| transcription-repair coupling factor [Coriobacterium glomerans PW2] gi|328456412|gb|AEB07606.1| transcription-repair coupling factor [Coriobacterium glomerans PW2] Length = 1187 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 131/377 (34%), Positives = 202/377 (53%), Gaps = 15/377 (3%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ PT+ Q AI DI DM M R+L GDVG GKT VAL A V+ G Q +++ P Sbjct: 629 PYEPTRDQIEAIGDIKADMEAPKPMDRLLCGDVGFGKTEVALRAAFKCVDNGYQVMVLCP 688 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHYE + + I VE+++ + AL + G +++GTH L Sbjct: 689 TTILAQQHYETLFERFAPFDIEVEVLSRFRTPSELSAALAGFSDGSVDVLVGTHRLLSSD 748 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L LVI+DE+ RFGVQ + +L VL ++ATPIPRT+ + G D+S IT Sbjct: 749 VNPHSLGLVIIDEEQRFGVQHKEQLKNLREQIDVLTLSATPIPRTMQMAMSGVRDMSLIT 808 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P GR+P+ TV + D V ++ L+ + Y++ ++ +++ + + Sbjct: 809 TPPCGRRPV-TVHVGEYDPDTVSAAIRFELAREGQVYYVSNRV--------KTIEDAIDR 859 Query: 510 LHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 +HE + + + HG+MS + E M F +L+ATT+IE GID + +IIE+A Sbjct: 860 VHEAAPEARVGVAHGKMSSREVEETMIDFTAHRIDVLVATTIIESGIDNPHTNTLIIEDA 919 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623 + GLAQL+QL+GRVGR + ++ PL++ + RL L ++ G IA Sbjct: 920 QRLGLAQLYQLKGRVGRSASQAFAYFMFPGEQPLTQEATERLCALSEFQELGSGMRIAMR 979 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R G ++G +Q G Sbjct: 980 DLEIRGAGSLVGAEQHG 996 >gi|54026849|ref|YP_121091.1| putative transcription-repair coupling factor [Nocardia farcinica IFM 10152] gi|54018357|dbj|BAD59727.1| putative transcription-repair coupling factor [Nocardia farcinica IFM 10152] Length = 1205 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 129/375 (34%), Positives = 200/375 (53%), Gaps = 13/375 (3%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F+ T Q +AI ++ DM + M R++ GDVG GKT +A+ A AV+ G Q V++ P Sbjct: 634 FTETVDQMTAIAEVKADMEKPVPMDRVVCGDVGYGKTEIAVRAAFKAVQDGKQVVVLVPT 693 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LAQQH + + + V+ ++ A R LE +A G I++GTH L Q + Sbjct: 694 TLLAQQHLQTFTERVAGFPVTVKGLSRFTDPAESRAVLEGMADGSVDIVVGTHRLLQTGV 753 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L LVIVDE+ RFGV+ + + T VL M+ATPIPRTL ++ G ++S I Sbjct: 754 RWKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 813 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P R P+ T + N + +L +G+ Y + S+ +R L Sbjct: 814 PPEERHPVLTYVGAYNDKQVTAAIRRELLRDGQVFYV------HNRVSSIDKAAKRIRDL 867 Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 + + + HG+M++ E + F +L+ TT+IE G+D+ +A+ +I+E A+ Sbjct: 868 VPE--ARVVVAHGQMNEDTLERTVQGFWQREYDVLVCTTIIETGLDISNANTLIVERADT 925 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625 GL+QLHQLRGRVGR E LY P PL++ +Y RL+ + D G +A +DL Sbjct: 926 LGLSQLHQLRGRVGRSRERGYAYFLYPPEKPLTETAYDRLATIAQNSDLGAGMAVAMKDL 985 Query: 626 KQRKEGEILGIKQSG 640 + R G +LG +QSG Sbjct: 986 EIRGAGNVLGAEQSG 1000 >gi|119897964|ref|YP_933177.1| transcription-repair coupling factor [Azoarcus sp. BH72] gi|119670377|emb|CAL94290.1| transcription-repair coupling factor [Azoarcus sp. BH72] Length = 1150 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 140/378 (37%), Positives = 203/378 (53%), Gaps = 19/378 (5%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q++AI ++ DM M R++ GDVG GKT VAL A AV G Q V++ P Sbjct: 606 FETTPDQQAAIDAVVGDMKSGRPMDRLVCGDVGFGKTEVALRAAFIAVADGKQVVVLCPT 665 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA+QHY+ + I + ++ + +AL+++ G+ IIIGTH L Q + Sbjct: 666 TLLAEQHYQTFADRFADWPIKIAELSRFKSAKEQAEALKQLGEGKVDIIIGTHRLLQKDV 725 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + +L LVI+DE+HRFGV+Q+ L Q + +L +TATPIPRTL L G + S I Sbjct: 726 LFKRLGLVIIDEEHRFGVRQKEALKQLRSEVDILTLTATPIPRTLGLAMEGLREFSVIAT 785 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R IKT + R + I R V+ G + Y++ +++ + N R N Sbjct: 786 APQKRLAIKTF---VQRWSKGIVREAVLREFKRGGQVYFLHNEVDTIE--NVR------N 834 Query: 509 SLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 L E + I + HG++ + + E VM F LL+ TT+IE GI++ A+ I+I Sbjct: 835 ELAELLPEARIVVGHGQLPERELERVMRDFTQQRANLLLCTTIIETGINIPTANTIVINR 894 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GFLIAE 622 A+ FGLAQLHQLRGRVGR + LL H + + RL + E+ GF +A Sbjct: 895 ADRFGLAQLHQLRGRVGRSHHQAYAYLLTDAHAKPTAQAQKRLEAISMMEELGSGFYLAM 954 Query: 623 EDLKQRKEGEILGIKQSG 640 DL+ R GE+LG QSG Sbjct: 955 HDLEIRGAGEVLGENQSG 972 >gi|296136148|ref|YP_003643390.1| transcription-repair coupling factor [Thiomonas intermedia K12] gi|295796270|gb|ADG31060.1| transcription-repair coupling factor [Thiomonas intermedia K12] Length = 1160 Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 151/426 (35%), Positives = 225/426 (52%), Gaps = 25/426 (5%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q +AI ++QDM M R++ GDVG GKT VAL A AV G Q ++AP Sbjct: 608 FEETPDQAAAIHAVVQDMISPKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPT 667 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA+QH E + + + + ++ AL+ +A G I+IGTH L ++ Sbjct: 668 TLLAEQHCETFRNRFADWPVRIAEMSRFRSTKEISAALDGLARGTVDIVIGTHKLLSPTV 727 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ +L LVIVDE+HRFGV+ + L + +L +TATPIPRTL + G D+S I Sbjct: 728 KFDRLGLVIVDEEHRFGVRHKEALKAMRASVDLLTLTATPIPRTLGMALEGLRDLSVIAT 787 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERF 507 P R IKT + R + + +L E G + Y++ ++E ++ R Sbjct: 788 APQKRLAIKTFV----RSESGAVMREAILREIKRGGQVYFLHNEVE--------TIENRR 835 Query: 508 NSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 L E + I I HG+M + D E VM F +L+ TT+IE GIDV A+ I++ Sbjct: 836 RQLEELVPEARIEIAHGQMHERDLERVMRDFHAQRFNILLCTTIIETGIDVPSANTIVMA 895 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIA 621 A+ FGLAQLHQLRGRVGR + LL L+K + RL ++ E+ GF +A Sbjct: 896 RADKFGLAQLHQLRGRVGRSHHQAYAYLLVPDVQSLTKQASQRLEAIQQMEELGSGFYLA 955 Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681 DL+ R GE+LG +QSG + + Q L++ +L A K + ++PDL + G + Sbjct: 956 MHDLEIRGAGEVLGEQQSGNMQEIGFQ--LYNDMLSEAVKALR--AGREPDLLNPLGVTT 1011 Query: 682 RILLYL 687 I L++ Sbjct: 1012 EINLHV 1017 >gi|91215486|ref|ZP_01252457.1| transcription-repair coupling factor [Psychroflexus torquis ATCC 700755] gi|91186438|gb|EAS72810.1| transcription-repair coupling factor [Psychroflexus torquis ATCC 700755] Length = 1121 Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 141/460 (30%), Positives = 239/460 (51%), Gaps = 20/460 (4%) Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279 W S + A + +A + L +++ +K G + + ++ + + T Q Sbjct: 505 WKSLKNKTKARVKKVAFDLIKLYAKRKLEK--GFQYGPDSHLQHELEASFIYEDTPDQGI 562 Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 A +D+ DM ++ M R++ GDVG GKT +A+ A AV+ G Q ++ P ILA QH++ Sbjct: 563 ATQDVKSDMEKEQPMDRLVCGDVGFGKTEIAIRAAFKAVDNGKQVAVLVPTTILAFQHHK 622 Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 + + V+ + RR LE + G I+IGTH L ++++ L L+I Sbjct: 623 TFTERLSEFPVTVDYLNRFRTTKERRSVLEGLEDGSVDIVIGTHQLVSKAVKFKNLGLLI 682 Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459 +DE+ +FGV + KL L +TATPIPRTL + + D+S I P R PI+ Sbjct: 683 IDEEQKFGVAVKDKLKTIKANVDTLTLTATPIPRTLQFSLMAARDLSTIKTPPPNRYPIE 742 Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519 T +I + D++ + + + G + ++I +IE E +++R + I Sbjct: 743 THVIRFSE-DQIRDAVSYEIERGGQVFFINNRIENINE--VAGLIQRLVP-----DAKIG 794 Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579 I HG+M E++M F N +L++TT+IE G+DV +A+ I I +A +FG++ LHQ+ Sbjct: 795 IGHGQMEGKKLENLMLQFMNNEFDVLVSTTIIESGLDVTNANTIFINSANNFGMSDLHQM 854 Query: 580 RGRVGRGEEISSCILLYHPPL---SKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633 RGRVGR + + C L+ PPL + ++ RLS L+ D G IA +DL+ R G++ Sbjct: 855 RGRVGRSNKKAFCYLIT-PPLTMMTDDAKKRLSALEQFSDLGSGINIAMKDLEIRGAGDL 913 Query: 634 LGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQD 670 LG +QSG F Q L++++ E+ + K + ++ Sbjct: 914 LGGEQSGFISDIGFDTYQKILNEAIQELKENEFKSVYDEE 953 >gi|332638696|ref|ZP_08417559.1| transcription-repair coupling factor [Weissella cibaria KACC 11862] Length = 1172 Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 145/433 (33%), Positives = 222/433 (51%), Gaps = 27/433 (6%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 EW + E +A ++ L ++ K+ P + + + P+ T Q Sbjct: 568 EWQKAKAKVAKKVEDIADELLQLYAERELKQGFAFP--QDDDVIRDFEDAFPYPETPDQI 625 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 + ++I DM + M R+L GDVG GKT VAL A A AG Q ++ P ILAQQHY Sbjct: 626 RSTQEIKADMEKTRPMDRLLVGDVGFGKTEVALRAAFKAAHAGKQVAMLVPTTILAQQHY 685 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG----QAHIIIGTHALFQDSIQYYK 394 E + + V I M + +K ++ G I++GTH + + + Sbjct: 686 ESMLNRFDGFGVNVAI----MSRFQTKKQMDATKAGLKDHTIDIVVGTHRILSKDMDFAD 741 Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454 L L+I+DE+ RFGV+ + +L T VL +TATPIPRTL + +G D+S I PA Sbjct: 742 LGLLIIDEEQRFGVKHKERLKALQTNVDVLTLTATPIPRTLNMAMVGVRDLSVIETPPAN 801 Query: 455 RKPIKTVIIPIN-RID-EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512 R PI+T ++ N R+ IER +S G + Y++ ++E + V SL Sbjct: 802 RYPIQTYVMEQNGRVTASAIER---EMSRGGQTYYLHNRVE-----DIAQVAGMIESLVP 853 Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 + + IHG+M++ E ++ F N +L+ TT+IE G+D+ +A+ + +ENA+H G Sbjct: 854 E--ARVGYIHGQMTEAQMEGILVDFINREYDVLVTTTIIETGVDIPNANTLFVENADHMG 911 Query: 573 LAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQ 627 LAQL+QLRGRVGR I+ Y L++ S RL+ +++ TE GF IA DL Sbjct: 912 LAQLYQLRGRVGRSNNIAYAYFTYPGTRSLNEESEKRLTAIRDFTELGSGFKIAMRDLSI 971 Query: 628 RKEGEILGIKQSG 640 R G++LG Q G Sbjct: 972 RGAGDLLGQSQHG 984 >gi|146298962|ref|YP_001193553.1| transcription-repair coupling factor [Flavobacterium johnsoniae UW101] gi|146153380|gb|ABQ04234.1| transcription-repair coupling factor [Flavobacterium johnsoniae UW101] Length = 1121 Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 132/414 (31%), Positives = 222/414 (53%), Gaps = 18/414 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T Q + +++ DM M R++ GDVG GKT VA+ A AV+ Q ++ P Sbjct: 560 YEDTPDQMKSTQEVKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVDNSKQVAVLVPT 619 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 ILA QHY + ++ + + + + + L+ +A G+ I+IGTH L ++ Sbjct: 620 TILAYQHYRTFSERLKDMPVSIGYLNRFRTAKQKTQTLKDLAEGKLDIVIGTHQLVNKNV 679 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + L L+IVDE+ +FGV + KL A L +TATPIPRTL + + D+S IT Sbjct: 680 VFKDLGLLIVDEEQKFGVNVKDKLKTIAANVDTLTLTATPIPRTLQFSLMAARDLSVITT 739 Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P R PI+T ++ N +E+I + + + + ++I +IE KE +++R Sbjct: 740 PPPNRYPIETNVVGFN--EEIIRDAISYEIQRNGQVFFINNRIENIKE--VAGMIQRLVP 795 Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 + + I HG+M E +M F NG +L+ATT+IE G+DV +A+ I I NA Sbjct: 796 -----NARVGIGHGQMDGAKLEELMLGFMNGDFDVLVATTIIESGLDVPNANTIFINNAN 850 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEED 624 +FGL+ LHQ+RGRVGR + + C + P +++++ R+ L+ + GF IA +D Sbjct: 851 NFGLSDLHQMRGRVGRSNKKAFCYFICPPYSSMTEDARKRIQALEQFSELGSGFNIAMKD 910 Query: 625 LKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 L+ R G++LG +QSG F Q +++++ E+ + K + ++ D+ + Sbjct: 911 LEIRGAGDLLGGEQSGFINEIGFDTYQKIMNEAIEELKENEFKDLYPEENDIDT 964 >gi|260887854|ref|ZP_05899117.1| transcription-repair coupling factor [Selenomonas sputigena ATCC 35185] gi|330838722|ref|YP_004413302.1| transcription-repair coupling factor [Selenomonas sputigena ATCC 35185] gi|260862360|gb|EEX76860.1| transcription-repair coupling factor [Selenomonas sputigena ATCC 35185] gi|329746486|gb|AEB99842.1| transcription-repair coupling factor [Selenomonas sputigena ATCC 35185] Length = 1118 Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 143/431 (33%), Positives = 229/431 (53%), Gaps = 22/431 (5%) Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EW + AR R + +++ IAL R+ K G + + ++ P+ T Q Sbjct: 499 EWVKAKARARASVEDIADELIALYAKRRAAK---GFAFSPDTPWQREFEDAFPYEETPDQ 555 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 AI++I DM + M R+L GDVG GKT VA+ A AV Q ++ P +LAQQH Sbjct: 556 RRAIEEIKADMEKPEPMDRLLCGDVGFGKTEVAIRAAYKAVMDHKQVAVLVPTTVLAQQH 615 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF-QDSIQYYKLI 396 ++ + + V++I ++ +ER+ + ++IGTHA+ Q + + L Sbjct: 616 FQTFSARFADFGVSVDVICRFRSAKEQKATIERLEANKVDVLIGTHAILNQKRVHFSDLG 675 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 L+IVDE+ RFGV+Q+ K+ + A VL ++ATPIPRTL ++ +G D+S I PA R Sbjct: 676 LLIVDEEQRFGVKQKEKIKKLAAGVDVLTLSATPIPRTLHMSLVGARDMSIIETPPAERF 735 Query: 457 PIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 P+++ +I N + I R L G + Y++ ++E + + R L Sbjct: 736 PVQSYVIEDNGAVLKNAIRR---ELRRGGQVYFVYNRVE-----SIDIMRRRLEELVPE- 786 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + I HG+M++ E VM F G +L+AT+++E G+DV +A+ II+ NA+ FGL+ Sbjct: 787 -ARIQTGHGQMAEELLERVMVDFYEGRYDILLATSIVENGLDVANANTIIVYNADRFGLS 845 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629 QL+Q+RGRVGR ++ +Y LS+ + RL +K + GF IA DL+ R Sbjct: 846 QLYQMRGRVGRSNHMAFAYFVYQADKVLSEMAEKRLQAMKEFAELGAGFKIAMRDLEIRG 905 Query: 630 EGEILGIKQSG 640 G +LG +Q G Sbjct: 906 AGNLLGAEQHG 916 >gi|297193946|ref|ZP_06911344.1| transcriptional-repair coupling factor [Streptomyces pristinaespiralis ATCC 25486] gi|297152012|gb|EFH31470.1| transcriptional-repair coupling factor [Streptomyces pristinaespiralis ATCC 25486] Length = 1070 Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 146/433 (33%), Positives = 233/433 (53%), Gaps = 27/433 (6%) Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 +WT + AR + A E+ A I L R G + +++ + T Q Sbjct: 469 DWTKTKARAKKAVKEIAADLIKLYSARMAAP---GHAFGPDTPWQRELEDAFAYVETPDQ 525 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 S I ++ +DM + M R++ GDVG GKT +A+ A AV+ G Q ++ P +L QQH Sbjct: 526 LSTIAEVKEDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH 585 Query: 338 Y-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396 + F ++Y+Q ++ ++ A + LE + G I+IGTH LF ++ L Sbjct: 586 FGTFSERYSQFP-VVTRALSRFQSDADAKATLEGLRDGSVDIVIGTHRLFSSETKFKDLG 644 Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 LVIVDE+ RFGV+ + +L + VL M+ATPIPRTL + G ++S IT P R Sbjct: 645 LVIVDEEQRFGVEHKEQLKKLRADVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERH 704 Query: 457 PIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHE 512 P+ T + P +I + R +L EG + ++I ++E ++ + R +V Sbjct: 705 PVLTFVGPYEEKQIGAAVRR--ELLREG-QVFYIHNRVESIDRAAARLREIVPE------ 755 Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572 + IA HG+MS+ E V+ F +L++TT++E GID+ +A+ +I+E ++FG Sbjct: 756 ---ARIATAHGQMSESALEQVVVDFWEKKFDVLVSTTIVESGIDIANANTLIVERGDNFG 812 Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQ 627 L+QLHQLRGRVGR E LY P PL++ ++ RL+ + ++TE G +A +DL+ Sbjct: 813 LSQLHQLRGRVGRSRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEI 872 Query: 628 RKEGEILGIKQSG 640 R G +LG +QSG Sbjct: 873 RGAGNLLGGEQSG 885 >gi|320527116|ref|ZP_08028303.1| transcription-repair coupling factor [Solobacterium moorei F0204] gi|320132444|gb|EFW24987.1| transcription-repair coupling factor [Solobacterium moorei F0204] Length = 1130 Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 125/409 (30%), Positives = 225/409 (55%), Gaps = 17/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + ++ IG + + ++ +K + F T QE A+ +I +DM M R++ Sbjct: 550 LLSLYANREQHIGFAFSKDNEMTKKFENSFSFDLTPDQEKAVAEIKKDMESNKPMDRLIC 609 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT V++ A AV Q ++ P ILA+QH+ +K Q + V+++ + Sbjct: 610 GDVGFGKTEVSIRASFKAVCDNKQVAVLCPTTILAEQHFHTFQKRYQEFPVTVKVLNRFV 669 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A +++ L+ + G+ IIIGTH L +++ L L++VDE+ RFGV+ + K+ + Sbjct: 670 SPAEQKQILKELEEGKVDIIIGTHRLLSKDVKFKDLGLLVVDEEQRFGVEHKEKIKELKN 729 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 VL ++ATPIPRTL ++ +G +S + P R ++T ++ ++ + + + ++ L Sbjct: 730 GVDVLSLSATPIPRTLQMSLVGIRSLSLLETPPLNRYSVQTYVVEKDK-NLIRDAIQKEL 788 Query: 480 SEGKKAYWICPQIEE--KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537 S + +++ I++ N +S+V S + I+HG++ ++ E +M F Sbjct: 789 SRNGQVFYLHNNIDQIYNIARNIQSLVPE---------SRVGIVHGKLGKVEIEDIMQRF 839 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 +L+ TT++E GID+ + + I+++NA+ FGLAQ++Q++GRVGR + ++ LL Sbjct: 840 IEKELDILVCTTIVENGIDIPNVNTILVDNAQDFGLAQIYQIKGRVGRSDRLAYAYLLIP 899 Query: 598 P--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGM 641 P LS+ + RL+ +K G+ IA DL R G++LG QSG Sbjct: 900 PRRQLSEVAQKRLTAVKEFARLGSGYKIAMRDLTIRGAGDLLGSNQSGF 948 >gi|34581455|ref|ZP_00142935.1| transcription-repair coupling factor [Rickettsia sibirica 246] gi|28262840|gb|EAA26344.1| transcription-repair coupling factor [Rickettsia sibirica 246] Length = 1122 Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 144/439 (32%), Positives = 240/439 (54%), Gaps = 35/439 (7%) Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQ--KILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 +IAL L++ K+++ +VE + + K N PFS T+ Q AI DI +D+ M Sbjct: 541 EIALHLIQIAAKRKLNSSASVEFDLEEYDKFCANFPFSETEDQLIAINDIKEDLRNGMLM 600 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHY----EFIKKYTQ 346 R++ GDVG GKT VA+ A+ ++ Q ++ P IL QH+ E K + Sbjct: 601 DRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQHFSRFIERFKGFGL 660 Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 N + + +I+ + R + + G+ +IIIGTH+L +I+++ L L+I+DE+ F Sbjct: 661 NIKQLSSVISSKEAKIIRSE----LESGKINIIIGTHSLLHKNIKFFNLKLLIIDEEQHF 716 Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466 GV Q+ L ++ HVL M+ATPIPRTL ++ G ++S I P R + T ++P Sbjct: 717 GVGQKEFLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVHTSVMP-- 774 Query: 467 RIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523 D VI R +L E G +++++ P+I++ + ++ + + IA +G Sbjct: 775 -CDPVIIR-DALLREHFRGGRSFYVVPRIKD-----IEDIAKQLKQIVPELSYKIA--YG 825 Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583 +M+ + VM+ F G +L++TT+IE GID+ +A+ +II NA+ GL+QL+QLRGR+ Sbjct: 826 KMTPSKIDEVMNEFYAGKFDILVSTTIIESGIDIAEANTMIIHNADMLGLSQLYQLRGRI 885 Query: 584 GRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGIKQ 638 GRG+ L H ++ +S RL +++N+ GF IA D+ R G ++G +Q Sbjct: 886 GRGKMRGYAYLTVASHKKMTSHSLRRLEIIQNSCALGSGFTIASRDMDLRGFGNLIGEEQ 945 Query: 639 SGMPKFLIAQPELHDSLLE 657 SG K + EL+ +LE Sbjct: 946 SGQIKEV--GTELYQEMLE 962 >gi|291515893|emb|CBK65103.1| transcription-repair coupling factor (mfd) [Alistipes shahii WAL 8301] Length = 1112 Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 139/410 (33%), Positives = 220/410 (53%), Gaps = 18/410 (4%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 IAL RK K G + + + ++ + + T Q+SA I +DM M R+ Sbjct: 524 IALYAKRKASK---GYAFSHDSYLQHELEASFRWEDTPDQQSATAAIKKDMESDQPMDRL 580 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 + GDVG GKT VA+ A A G Q ++ P ILA QHY + ++ + VE I Sbjct: 581 VCGDVGFGKTEVAIRAAFKAAVDGKQVAVLVPTTILALQHYRSFTERLRDFPVRVEYINR 640 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 + E +A G+ I+IGTH + I + L L+I+DE+ +FGV + KLT+ Sbjct: 641 TKSTKEVSQIREDLASGKIDILIGTHKMLGKQIVFRDLGLLIIDEEQKFGVAAKEKLTEM 700 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLK 476 + + L +TATPIPRTL + +G D+S I+ P R+PI T + +E+I + ++ Sbjct: 701 SVSVDTLTLTATPIPRTLRFSLMGSRDLSVISTPPPNRQPILTESHVFS--EEIIRDAVE 758 Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536 L+ G + Y++ ++E+ + ++ R + +A+ HG+M E ++ Sbjct: 759 AELARGGQVYFVHNRVEDLPA--LQGLITRLCP-----KARVAVGHGKMPAEQLEKLIMD 811 Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596 F G +L++TT++E GID+ +A+ II++NA++FGL+ LHQLRGRVGR + C LL Sbjct: 812 FIYGEFDVLVSTTIVENGIDIPNANTIIVDNAQNFGLSDLHQLRGRVGRSNQKGYCYLLS 871 Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 P LS ++ RL ++ D GF IA +DL R G +LG +QSG Sbjct: 872 PPDELLSSDARRRLRAIEEFSDLGSGFNIAMQDLDIRGAGNLLGAEQSGF 921 >gi|194364979|ref|YP_002027589.1| transcription-repair coupling factor [Stenotrophomonas maltophilia R551-3] gi|194347783|gb|ACF50906.1| transcription-repair coupling factor [Stenotrophomonas maltophilia R551-3] Length = 1154 Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 157/477 (32%), Positives = 248/477 (51%), Gaps = 30/477 (6%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W+ R+ +A ++ + R+Q + G+ + V+ + + PF T Q Sbjct: 557 QWSKAKRKAAEKVRDVAAELLEIQARRQARA--GLALQVDRAMYEPFAAGFPFEETPDQL 614 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI L+D+S M R++ GDVG GKT VA+ A AA AG Q ++ P +LA+QHY Sbjct: 615 AAIDATLRDLSSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVLVPTTLLAEQHY 674 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + VE+++ + LE++A G +I+GTH L Q +++ L +V Sbjct: 675 RNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVAAGTIDVIVGTHRLLQPDVKFKDLGMV 734 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+Q+ L H+L +TATPIPRTL + G D+S I P R + Sbjct: 735 IVDEEQRFGVRQKEALKALRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPPNRLAV 794 Query: 459 KTVIIPINRIDEVI--ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T I + D + E + L+ G + Y++ +E S+ L E Sbjct: 795 QTF---ITQWDNALLREAFQRELARGGQLYFLHNDVE--------SIGRMQRELSELVPE 843 Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + I I HG+M + + E VM F+ +L++TT+IE GID+ +A+ III A+ FGLAQ Sbjct: 844 ARIGIAHGQMPERELEKVMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRFGLAQ 903 Query: 576 LHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630 LHQLRGRVGR + L+ ++ ++ RL + + ++ GF +A DL+ R Sbjct: 904 LHQLRGRVGRSHHRAYAYLVAPDRRSITPDAEKRLEAIASMDELGAGFTLATHDLEIRGA 963 Query: 631 GEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS---VRGQSIRI 683 GE+LG QSG M + + L+ LLE A + K + PDL + VRG + + Sbjct: 964 GELLGEDQSGQMAEVGFS---LYTELLERAVRSIKQ--GKLPDLDAGEEVRGAEVEL 1015 >gi|57233929|ref|YP_181993.1| transcription-repair coupling factor [Dehalococcoides ethenogenes 195] gi|57224377|gb|AAW39434.1| transcription-repair coupling factor [Dehalococcoides ethenogenes 195] Length = 1148 Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 137/408 (33%), Positives = 213/408 (52%), Gaps = 17/408 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + + K G P + + Q++ + P+ T Q A+ DI DM M R++ Sbjct: 575 LLDIYAKRKMASGYPFSTDTVWQQEMEASFPYLETPDQLKALYDIKADMENPRPMDRLIL 634 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV G Q ++ P +LAQQHY ++ + +E+++ Sbjct: 635 GDVGYGKTEVAIRAAFKAVMDGKQVAVLVPTTVLAQQHYTTFRERLATFPVKIEVLSRFC 694 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + ++ +E + G+ I IGTH L Q I + L LVI+DE+ RFGV + + Sbjct: 695 SPSEQKTTVENLERGEVDICIGTHRLIQADITFKDLGLVIIDEEQRFGVAHKEFFKKLRA 754 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKV 477 VL ++ATPIPRTL ++ +G D+S I P R PIKTV+ + I E I R Sbjct: 755 QVDVLTLSATPIPRTLHMSLVGVRDMSIIETPPGERLPIKTVVAAFDERLIREAILR--- 811 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537 + + +++ ++ + ER L + I I HG+M++ +VM F Sbjct: 812 EMERNGQVFFVNNRV-----MGINLLAERIQQLVPE--ARIGIAHGQMAEEKLAAVMADF 864 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 +L+ TT+IE G+DV +A+ +II A+ FGL QL+QLRGRVGR +++ LY Sbjct: 865 VRHELDVLVCTTIIESGVDVPNANTLIINRADRFGLTQLYQLRGRVGRSSQLAYAYFLYE 924 Query: 598 PP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 L+ ++ RL + + G+ IA +DL+ R G +LG+KQSG Sbjct: 925 KDKRLTSDAEKRLKTIYEAAELGAGYGIAMKDLEIRGAGTLLGVKQSG 972 >gi|32266655|ref|NP_860687.1| ATP-dependent DNA helicase RecG [Helicobacter hepaticus ATCC 51449] gi|32262706|gb|AAP77753.1| ATP-dependent DNA recombinase RecG [Helicobacter hepaticus ATCC 51449] Length = 628 Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 147/383 (38%), Positives = 211/383 (55%), Gaps = 31/383 (8%) Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325 + ++PFS T Q SAIKDI D+ K R++ GDVG GKT+V L A+ ++ Sbjct: 236 IESLPFSLTSGQCSAIKDISLDLDSKIAARRLIMGDVGCGKTIVILCAVMMTYPH--TSI 293 Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385 +MAP ILA Q YE K+ ++ I ++ A R+ L+ +AH IIGT AL Sbjct: 294 LMAPTTILATQLYEEAKR------LLPPFIKIHLITAKTRQDLQ-----EAHFIIGTQAL 342 Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKL------TQKATAPHVLLMTATPIPRTLVLTS 439 I + LV+ DEQHRFG QR L K PH+L +ATPIPRTL + + Sbjct: 343 LYREITLENVALVMSDEQHRFGTNQRYGLEKIGQDAHKNARPHILQFSATPIPRTLAMIN 402 Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499 ID+S I + P +K I T I+ + ++ L+ +++G +A I P +EE + + Sbjct: 403 AQFIDLSVIQDLPF-KKDISTSIVDKSTFKTLLSALQNEINQGHQAIIIYPLVEESEHLD 461 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK-NGTCKLLIATTVIEVGIDVV 558 + S+ E + +HF +S+ G+ D +K++V+D F NG+ LL+ATT++EVGI + Sbjct: 462 YLSLNEGLSFWQKHF-NSVHYTSGK--DKNKQNVIDDFAHNGS--LLLATTLVEVGISLP 516 Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618 S I+I E GLA LHQLRGRV R C L H P ++ RL +T +GF Sbjct: 517 KVSTIVIVAPERLGLATLHQLRGRVSRNGLKGYCYLYTHQPQNE----RLKAFCSTLNGF 572 Query: 619 LIAEEDLKQRKEGEIL-GIKQSG 640 IAE DLK R G++L G +QSG Sbjct: 573 DIAELDLKYRNSGDLLSGERQSG 595 >gi|319902708|ref|YP_004162436.1| transcription-repair coupling factor [Bacteroides helcogenes P 36-108] gi|319417739|gb|ADV44850.1| transcription-repair coupling factor [Bacteroides helcogenes P 36-108] Length = 1129 Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 137/409 (33%), Positives = 219/409 (53%), Gaps = 17/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + Q ++E G + + + +++ + + T Q A D+ DM M R++ Sbjct: 531 LIKLYSQRREEKGFQYSPDSFLQRELEASFIYEDTPDQSKATADVKADMESTRPMDRLVC 590 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LA QH++ K+ + V+ ++ Sbjct: 591 GDVGFGKTEVAVRAAFKAVADNKQVAVLVPTTVLAYQHFQTFKERLKGLPCRVDYLSRAR 650 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A + ++ +A G +I+IGTH + +++ L L+I+DE+ +FGV + KL Q Sbjct: 651 TAAQAKGVIKALADGDVNILIGTHRILGKDVKFKDLGLLIIDEEQKFGVSVKEKLRQLKV 710 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478 L MTATPIPRTL + LG D+S I+ P R PI+T + N +EVI + + Sbjct: 711 NVDTLTMTATPIPRTLQFSLLGARDLSVISTPPPNRYPIQTEVHTFN--EEVIADAINFE 768 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 +S + +++ +I E ++++ER + I HG+M + E ++ F Sbjct: 769 MSRNGQVFFVNNRISNLYE--LKAMIERRIP-----DCRVCIGHGQMEPAELEKIILDFV 821 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 N +L+ATT+IE GID+ +A+ III A++FGL+ LHQ+RGRVGR + + C LL P Sbjct: 822 NYDYDVLLATTIIESGIDIPNANTIIINAAQNFGLSDLHQMRGRVGRSNKKAFCYLL-AP 880 Query: 599 PLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 PLS + RL ++N D G IA +DL R G +LG +QSG Sbjct: 881 PLSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 929 >gi|78048574|ref|YP_364749.1| transcription-repair coupling factor [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037004|emb|CAJ24723.1| transcription-repair coupling factor [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 1154 Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 139/381 (36%), Positives = 207/381 (54%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q +AI L+D+ M R++ GDVG GKT VA+ A AA AG Q ++ Sbjct: 604 GFPFEETGDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVL 663 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LA+QHY + + + VE+++ + LE++A G+ +IIGTH L Q Sbjct: 664 VPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGEIDVIIGTHRLLQ 723 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++ L LV+VDE+ RFGV+Q+ L H+L +TATPIPRTL + G D+S Sbjct: 724 PDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSI 783 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R ++T I + + E +R LS G + Y++ +E S+V Sbjct: 784 IATPPPNRLAVQTFITAWDNTLLREAFQR---ELSRGGQLYFLHNDVE--------SIVR 832 Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 L E + I I HG+M + + E VM F+ +L++TT+IE GID+ +A+ II Sbjct: 833 MQRDLSELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTII 892 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619 I A+ FGLAQLHQLRGRVGR + L+ ++ ++ RL + + ++ GF Sbjct: 893 INRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEAIASMDELGAGFT 952 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG QSG Sbjct: 953 LATHDLEIRGAGELLGEDQSG 973 >gi|85705340|ref|ZP_01036439.1| transcription-repair coupling factor [Roseovarius sp. 217] gi|85670213|gb|EAQ25075.1| transcription-repair coupling factor [Roseovarius sp. 217] Length = 1150 Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 141/398 (35%), Positives = 224/398 (56%), Gaps = 21/398 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q AI+D+L D+ + M R++ GDVG GKT VA+ A AA G Q ++AP Sbjct: 593 PYQETDDQLHAIEDVLSDLGSGSPMDRLICGDVGFGKTEVAMRAAFAAAMTGLQVAVIAP 652 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHY+ + + V ++ + K + ++ G+A I++GTHAL Sbjct: 653 TTLLARQHYQEFASRFRGFPVNVRPLSRFVSAGDAAKTRDAMSRGEADIVVGTHALLAKG 712 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ L L+I+DE+ RFGV + +L Q + HVL +TATPIPRTL L+ G D+S I Sbjct: 713 IKFKNLGLLIIDEEQRFGVAHKERLKQLRSDVHVLTLTATPIPRTLQLSLSGVRDLSIIG 772 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R I+T ++ D V R + +L E G +++++ P+I + E +E Sbjct: 773 TPPVDRLAIRTY---VSEFDSVTVR-EALLREHYRGGQSFYVVPRISDLPE------IED 822 Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 F + + I HG+M+ + + M++F +G +L+ATT++E G+D+ A+ +II Sbjct: 823 FLKTQVPEVTYV-IAHGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMIIH 881 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIA 621 A+ FGL+QL+Q+RGRVGR + + L P PL+ + RL VL + + GF +A Sbjct: 882 RADMFGLSQLYQIRGRVGRSKTRAYAYLTTKPRAPLTPGAEKRLRVLGSLDTLGAGFTLA 941 Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 +DL R G +LG +QSG + + EL+ S+LE A Sbjct: 942 SQDLDIRGAGNLLGEEQSGQMRDV--GYELYQSMLEEA 977 >gi|283783133|ref|YP_003373887.1| transcription-repair coupling factor [Gardnerella vaginalis 409-05] gi|283441749|gb|ADB14215.1| transcription-repair coupling factor [Gardnerella vaginalis 409-05] Length = 1202 Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 136/428 (31%), Positives = 223/428 (52%), Gaps = 17/428 (3%) Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 +W + A+ + E+ I L R+Q + G + + +++ P+ T Q Sbjct: 607 DWAQTKAKAKKHVHEIAENLIKLYSARQQSR---GFAFSKDTPWQKELEDAFPYQETADQ 663 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + I ++ DM M R++ GDVG GKT +AL A AV+ Q V++ P +L QQH Sbjct: 664 LTTIDEVKADMENPIPMDRLICGDVGFGKTEIALRAAFKAVQDSKQVVVLVPTTLLVQQH 723 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 YE + + V ++ + L + G ++IGTH L SI++ L L Sbjct: 724 YETFTNRFEGFPVKVAAMSRFQTSKEIEETLAGLQDGSIDVVIGTHKLLNPSIKFKDLGL 783 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI+DE+ RFGV+ + L T VL ++ATPIPRTL + G ++S + P R P Sbjct: 784 VIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP 843 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517 + T + + +V +K L G + +++ ++E + SV + L Sbjct: 844 VLTYVGAYDN-SQVAACIKRELLRGGQVFYVHNRVE-----DISSVASKIQELVPDV--R 895 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 +AI HG+M + ++V+ F + +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLH Sbjct: 896 VAIAHGKMGEKQLDAVIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLH 955 Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632 QLRGRVGRG E + LY P P+++ S+ RLS + GF +A +DL+ R G Sbjct: 956 QLRGRVGRGHERAYAYFLYDPSKPMTQQSHDRLSTIAQHTALGSGFDVAMKDLELRGTGN 1015 Query: 633 ILGIKQSG 640 +LG +QSG Sbjct: 1016 LLGDEQSG 1023 >gi|224373507|ref|YP_002607879.1| transcription-repair coupling factor [Nautilia profundicola AmH] gi|223589861|gb|ACM93597.1| transcription-repair coupling factor [Nautilia profundicola AmH] Length = 974 Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 146/425 (34%), Positives = 224/425 (52%), Gaps = 29/425 (6%) Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312 IP+N EG ++ + PF T Q I DIL D K M R+L GDVG GKT VA++ Sbjct: 450 IPLNFEG--VREFIAKAPFVHTPDQAKTINDILDDFKTK-IMDRLLSGDVGFGKTEVAMV 506 Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372 A +G Q ++AP IL QH+E K+ ++T I + + +++ LE++ Sbjct: 507 ASFVVANSGYQVAVIAPTTILVNQHFESFKERFKDTDIKIAKLDRFTSSKEKKEILEKVK 566 Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432 G+ III THA +I+Y L LVI+DE+H+FGV+Q+ KL + + H L M+ATPIP Sbjct: 567 TGEIDIIISTHAGL--NIEYKNLGLVIIDEEHKFGVKQKEKLKEISKNVHTLYMSATPIP 624 Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICP 490 RTL + IS + P G++ KT + N I EVI R L G + ++I Sbjct: 625 RTLNMALSQVKSISTLETAPKGKQSTKTFVKEWNENLIKEVILR---ELRRGGQIFYIYN 681 Query: 491 QIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548 I E+K+ + ++ I ++H +++ E + F G L + T Sbjct: 682 NIAYIEQKKKELQKILPDL---------RILVLHAKLTPAQIEKGLVDFIAGKYDLALTT 732 Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG--EEISSCILLYHPPLSKNSYT 606 T++E GI + + + +I+ENA+ FG+A LHQ+RGRVGRG E + ++ LS+++ Sbjct: 733 TIVESGIHIPNVNTVIVENADKFGIADLHQIRGRVGRGKHEGYAYFLVKNKDELSEDAKK 792 Query: 607 RLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIAR 660 RL L+ G ++A DL+ R G ILG +QSG K + + L D+L E++ Sbjct: 793 RLLALEENSFLGSGQVLAMRDLEIRGGGNILGAEQSGQIKGVGYSMYVKMLEDTLKELSG 852 Query: 661 KDAKH 665 K K Sbjct: 853 KKVKE 857 >gi|227501542|ref|ZP_03931591.1| possible transcription-repair coupling factor [Corynebacterium accolens ATCC 49725] gi|227077567|gb|EEI15530.1| possible transcription-repair coupling factor [Corynebacterium accolens ATCC 49725] Length = 1213 Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 132/429 (30%), Positives = 220/429 (51%), Gaps = 19/429 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W + ++ A +AG++ L ++Q G + ++ N PF T+ Q Sbjct: 588 DWKNTKKKARAAVREIAGELVDLYAKRQAAP--GHQFAPDNPWQAEMEDNFPFVETEDQM 645 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 AI + +DM M R++ GDVG GKT VA+ A AV+ G Q ++ P +LAQQH+ Sbjct: 646 LAIDAVKEDMESTVPMDRVVVGDVGYGKTEVAIRAAFKAVQDGTQVAVLVPTTLLAQQHF 705 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + + +++ + + + +A G I++GTH L Q + + L L+ Sbjct: 706 DTFSERMAGFPVKMAVLSRFTSKKEATEIFKGLADGSIDIVVGTHRLLQTGVHWKNLGLI 765 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 +VDE+ RFGV+ + + + VL M+ATPIPRTL ++ G ++S I P R P+ Sbjct: 766 VVDEEQRFGVEHKEHIKALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPV 825 Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516 T + +V ++ L + ++I ++ EKK R +V + Sbjct: 826 LTYVGAYED-KQVAAAIRRELLRDGQTFFIHNKVSDIEKKARELRDLVPE---------A 875 Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576 I + HG+M++ E + F + +L+ TT++E G+D+ +A+ +I+ENA H GL+QL Sbjct: 876 RIVVAHGQMNEDVLEKTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQL 935 Query: 577 HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631 HQLRGRVGR E LY L++ SY RL+ + D G +A +DL+ R G Sbjct: 936 HQLRGRVGRSRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAG 995 Query: 632 EILGIKQSG 640 +LG +QSG Sbjct: 996 NVLGAQQSG 1004 >gi|298253895|ref|ZP_06977482.1| transcription-repair coupling factor [Gardnerella vaginalis 5-1] gi|297532038|gb|EFH71013.1| transcription-repair coupling factor [Gardnerella vaginalis 5-1] Length = 1202 Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 136/428 (31%), Positives = 223/428 (52%), Gaps = 17/428 (3%) Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 +W + A+ + E+ I L R+Q + G + + +++ P+ T Q Sbjct: 607 DWAQTKAKAKKHVHEIAENLIKLYSARQQSR---GFAFSKDTPWQKELEDAFPYQETADQ 663 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 + I ++ DM M R++ GDVG GKT +AL A AV+ Q V++ P +L QQH Sbjct: 664 LTTIDEVKADMENPIPMDRLICGDVGFGKTEIALRAAFKAVQDSKQVVVLVPTTLLVQQH 723 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 YE + + V ++ + L + G ++IGTH L SI++ L L Sbjct: 724 YETFTNRFEGFPVKVAAMSRFQTSKEIEETLAGLQDGSIDVVIGTHKLLNPSIKFKDLGL 783 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 VI+DE+ RFGV+ + L T VL ++ATPIPRTL + G ++S + P R P Sbjct: 784 VIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP 843 Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517 + T + + +V +K L G + +++ ++E + SV + L Sbjct: 844 VLTYVGAYDN-SQVAACIKRELLRGGQVFYVHNRVE-----DISSVASKIQELVPDV--R 895 Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577 +AI HG+M + ++V+ F + +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLH Sbjct: 896 VAIAHGKMGEKQLDAVIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLH 955 Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632 QLRGRVGRG E + LY P P+++ S+ RLS + GF +A +DL+ R G Sbjct: 956 QLRGRVGRGHERAYAYFLYDPSKPMTQQSHDRLSTIAQHTALGSGFDVAMKDLELRGTGN 1015 Query: 633 ILGIKQSG 640 +LG +QSG Sbjct: 1016 LLGDEQSG 1023 >gi|298528164|ref|ZP_07015568.1| transcription-repair coupling factor [Desulfonatronospira thiodismutans ASO3-1] gi|298511816|gb|EFI35718.1| transcription-repair coupling factor [Desulfonatronospira thiodismutans ASO3-1] Length = 1144 Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 137/406 (33%), Positives = 216/406 (53%), Gaps = 13/406 (3%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ M Q K G + ++ Q+ F T QE AI++++QDM M R++ Sbjct: 567 LVDMYAQRKVVKGYSYSPPEELYQEFANTFGFQETPDQEQAIREVMQDMESDEPMDRLVC 626 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV+ G Q ++ P +LA+QHY+ + Q+ I V +++ + Sbjct: 627 GDVGFGKTEVAMRAAFRAVQDGKQVALLCPTTVLAEQHYQNFVQRMQDFAINVRMLSRFV 686 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 P+ ++ LE G+ I+IGTH + + +L L+I+DE+ RFGV+ + KL Q Sbjct: 687 PRNRQKIILEGARKGEVDILIGTHRILSQDVILPRLSLMILDEEQRFGVRHKEKLKQYRQ 746 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 VL +TATPIPRTL L+ G +S I P RKP+++ II +R D + L+ L Sbjct: 747 NIDVLTLTATPIPRTLQLSVSGIRTLSVIETPPLDRKPVESSIIERDR-DFLRHALQREL 805 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 + +W+ +++ SV+E L + + + HG+M + E M F + Sbjct: 806 DRQGQVFWVYNRVQ-----GLESVMEYVQDLMPE--ARVDMAHGQMPERILEENMHRFWH 858 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP- 598 +L+ T +IE G+D A+ +I++ A FGL QL+QLRGRVGR +E + + Sbjct: 859 HEIDILVCTAIIESGLDFPRANTLIVDQAHMFGLGQLYQLRGRVGRSQEQAYAYFIVPSV 918 Query: 599 -PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640 L + S R+ ++ + + GF +A EDL+ R G ILG QSG Sbjct: 919 RELGEKSRKRMQIILDMDYLGAGFQVAMEDLRLRGAGNILGEVQSG 964 >gi|120610265|ref|YP_969943.1| transcription-repair coupling factor [Acidovorax citrulli AAC00-1] gi|120588729|gb|ABM32169.1| transcription-repair coupling factor [Acidovorax citrulli AAC00-1] Length = 1163 Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 151/422 (35%), Positives = 225/422 (53%), Gaps = 29/422 (6%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 ++ + F T Q +AI ++QDM M R++ GDVG GKT VAL A AV G Sbjct: 601 EQFANDFGFEETADQNAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVTGGK 660 Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEII---TGNMPQAHRRKALERIAHGQAHI 378 Q +AP +LA+QHY+ + ++++ I E+ +G A A++ I G I Sbjct: 661 QVAFLAPTTLLAEQHYQTLVDRFSKWPVKIAEVSRFRSGKEITA----AIKGIGDGTVDI 716 Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438 ++GTH L +S +++ L L+I+DE+HRFGV+ + ++ Q VL +TATPIPRTL + Sbjct: 717 VVGTHKLLSESTKFHNLGLLIIDEEHRFGVRHKEQMKQLRAEVDVLTLTATPIPRTLGMA 776 Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKE 497 G D+S I P R IKT + N VI E + L G + Y++ ++E Sbjct: 777 LEGLRDLSVIATAPQRRLAIKTFV--RNEGTGVIREAVLRELKRGGQCYFLHNEVE---- 830 Query: 498 SNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556 ++ R L E + IA+ HG+M + + E VM F +L+ +T+IE GID Sbjct: 831 ----TIENRRQKLEEILPEARIAVAHGQMPERELEKVMRDFVAQRYNILLCSTIIETGID 886 Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNT 614 V A+ II+ A+ FGLAQLHQLRGRVGR + L+ L+K + RL ++ Sbjct: 887 VPTANTIIMSRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDVDGLTKQAAQRLDAIQQM 946 Query: 615 ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671 E+ GF +A DL+ R GE+LG QSG L +L++ +L A K K ++P Sbjct: 947 EELGSGFYLAMHDLEIRGAGEVLGESQSG--NMLEVGFQLYNEMLAEAVKSLK--AGKEP 1002 Query: 672 DL 673 DL Sbjct: 1003 DL 1004 >gi|220930453|ref|YP_002507362.1| transcription-repair coupling factor [Clostridium cellulolyticum H10] gi|220000781|gb|ACL77382.1| transcription-repair coupling factor [Clostridium cellulolyticum H10] Length = 1174 Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 128/378 (33%), Positives = 212/378 (56%), Gaps = 17/378 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q I +I +DM + M R+L GDVG GKT VA+ A+ AV G Q +AP Sbjct: 625 PYQETDDQLKCIDEIKKDMESEGLMDRLLCGDVGYGKTEVAIRAVFKAVMDGKQVAYLAP 684 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQ YE K + + V++++ A ++K ++ + G I+IGTH L Q Sbjct: 685 TTILAQQLYENFKTRMNDFPVTVDVMSRFRTPAEQKKIVKSVKAGNTDILIGTHRLLQKD 744 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +++ L L+++DE+ RFGV + KL VL +TATPIPRTL ++ +G DIS + Sbjct: 745 VEFKDLGLLVIDEEQRFGVTHKEKLKTLKPNVDVLTLTATPIPRTLHMSLVGIRDISVLE 804 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERF 507 + P R P++T ++ N ++ + + + ++ + +++ ++ + K R ++ Sbjct: 805 DPPEERYPVQTYVMEYN-MELIRDGIIREMARDGQVFYMYNRVRGIDLKAQEIRKMIP-- 861 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + +A+ HG+M++ + E VM F NG +L+ TT+IE G+D+ + + I++E+ Sbjct: 862 -------DARVAVAHGKMNEKELEDVMYGFINGEYDVLVCTTIIESGLDMPNVNTIVVED 914 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622 A+ GL+QL+Q+RGRVGR ++ + Y LS+ + RL +K TE GF IA Sbjct: 915 ADRMGLSQLYQIRGRVGRSNRLAYAYITYKKDKVLSEVAEKRLQAIKEFTEFGSGFRIAM 974 Query: 623 EDLKQRKEGEILGIKQSG 640 DL+ R G +LG +Q G Sbjct: 975 RDLEIRGAGNLLGSEQHG 992 >gi|313112804|ref|ZP_07798451.1| transcription-repair coupling factor [Faecalibacterium cf. prausnitzii KLE1255] gi|310624874|gb|EFQ08182.1| transcription-repair coupling factor [Faecalibacterium cf. prausnitzii KLE1255] Length = 1157 Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 145/455 (31%), Positives = 229/455 (50%), Gaps = 21/455 (4%) Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWT-SPARERLAYDELLAGQIALLLMRKQFKKE 250 DLL + + P E + K EW + A+ + A +E+ I L R+Q Sbjct: 538 DLLSRYTAPGDEEKVKLA----KLGGAEWQRTRAKVKKATEEMAQELIELYARRRQ---A 590 Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310 G +G + + T Q +A +I QDM + M R+L GDVG GKT VA Sbjct: 591 TGYAFPPDGDWQRDFETRFDYDETDDQLNATAEIKQDMEKGWPMDRLLCGDVGVGKTEVA 650 Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370 L A V G Q I+AP +LA QHY I + + VE+++ +++ L Sbjct: 651 LRAAFKCVMGGKQCAILAPTTLLAWQHYNTILSRMEAFPVKVEMMSRFRTAKQQKETLRG 710 Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430 + G I++GTH L ++++ L LVI+DE+ RFGV+ + KL + +L ++ATP Sbjct: 711 LQSGSVDIVVGTHRLLSKDVKFHDLGLVIIDEEQRFGVKHKEKLKENFIGVDMLTLSATP 770 Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490 IPRTL + G D+S I + P R+P++T ++ N + + E +K L+ G + Y++ Sbjct: 771 IPRTLNMAMSGIRDLSTIEQPPIERQPVETFVLEYNDV-ILAEAMKKELARGGQVYYLHN 829 Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550 +++ N + + L + I I HG+M++ + V NG +L+ TT+ Sbjct: 830 RVD-----NIEACAAHVSKLVPG--ARIGIAHGKMTEEELNPVWQHLLNGEIDILVCTTL 882 Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRL 608 IE GIDV + + +IIE+A+ GLAQL+Q+RGRVGR + + L+ + RL Sbjct: 883 IETGIDVRNCNTLIIEDADRMGLAQLYQIRGRVGRSGRKAYAYFTFRRDKTLTDIAQKRL 942 Query: 609 SVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640 S ++ GF IA DL+ R G +LG Q G Sbjct: 943 SAIREFTAFGSGFRIAMRDLQIRGAGSLLGHSQHG 977 >gi|213962106|ref|ZP_03390370.1| transcription-repair coupling factor [Capnocytophaga sputigena Capno] gi|213955112|gb|EEB66430.1| transcription-repair coupling factor [Capnocytophaga sputigena Capno] Length = 1110 Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 131/378 (34%), Positives = 206/378 (54%), Gaps = 17/378 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T Q A ++ DM M R++ GDVG GKT VA+ A AV+ G Q ++ P Sbjct: 551 YEDTPDQSKATAEVKADMESSKPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPT 610 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA QH++ + ++ + ++ + ++ LE +A GQ IIIGTH + + + Sbjct: 611 TVLAFQHFQTFSQRMKDFPVRIDYLNRFRTAKEKKIILEELAKGQLDIIIGTHQIVGEKV 670 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 Y L L+IVDE+ +FGV + KL VL +TATPIPRTL + + D+S I Sbjct: 671 TYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLMAARDLSVINT 730 Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P R PI + ++P N +EVI + ++ + G + +++ ++E +E +++R Sbjct: 731 PPPNRYPIDSQVVPFN--EEVIRDGIRYEIQRGGQVFFMHNRVENIQE--VAGMIQRLLP 786 Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 + IAI HG+M E M +F G +L+ATT+IE G+DV +A+ I I NA Sbjct: 787 -----DARIAIGHGQMDGKKLEETMLAFMEGRYDVLVATTIIESGLDVPNANTIFINNAH 841 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPL---SKNSYTRLSVLKNTED---GFLIAEE 623 +FGL+ LHQ+RGRVGR + + C + PPL S ++ R+ + D G IA + Sbjct: 842 NFGLSDLHQMRGRVGRSNKKAFCYFI-TPPLIAMSDDARKRIEAIAQFSDLGSGLNIAMK 900 Query: 624 DLKQRKEGEILGIKQSGM 641 DL+ R G++LG +QSG Sbjct: 901 DLEIRGAGDLLGGEQSGF 918 >gi|83588954|ref|YP_428963.1| transcription-repair coupling factor [Moorella thermoacetica ATCC 39073] gi|83571868|gb|ABC18420.1| transcription-repair coupling factor [Moorella thermoacetica ATCC 39073] Length = 1183 Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 129/378 (34%), Positives = 208/378 (55%), Gaps = 17/378 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P++ T Q AI ++ DM + M R+L GDVG GKT VA+ A AV G Q ++ P Sbjct: 625 PYTETPDQLRAIAEVKADMEKPRPMDRLLCGDVGYGKTEVAMRAAFKAVMDGMQVAVLVP 684 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHYE K + + +++ ++ +E + G+ I+IGTH L Sbjct: 685 TTILAQQHYETFKARFAPFPVKIAVLSRFCSPREQKVVVEALKRGEVDIVIGTHRLLSSD 744 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L LVI+DE+ RFGV + KL Q + VL MTATPIPRTL ++ G D+S I Sbjct: 745 VNFKNLGLVIIDEEQRFGVAHKEKLKQLRYSVDVLTMTATPIPRTLHMSLAGVRDMSMIE 804 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P R P++T ++ N + V E ++ L G + + + ++++ ++RF Sbjct: 805 TPPEDRFPVQTYVVEYN-PELVREAIRRELDRGGQVFIVHNRVQD---------IDRFAY 854 Query: 510 LHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + + + I HG+M + + E+VM F +G +L++TT++E G+D+ +A+ +I++ Sbjct: 855 HIQQLVPEARVGIGHGQMGEEELENVMLDFISGRYDVLVSTTIVENGLDIQNANTLIVDE 914 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAE 622 +++FGLAQL+QLRGRVGR ++ Y P L + + RL+ ++ G+ IA Sbjct: 915 SDNFGLAQLYQLRGRVGRTNRLAYAYFTYRPDKVLGEIAEKRLAAIREFTAFGSGYKIAL 974 Query: 623 EDLKQRKEGEILGIKQSG 640 DL+ R G LG +Q G Sbjct: 975 RDLQIRGAGNFLGPEQHG 992 >gi|149186684|ref|ZP_01864995.1| transcription-repair coupling factor [Erythrobacter sp. SD-21] gi|148829592|gb|EDL48032.1| transcription-repair coupling factor [Erythrobacter sp. SD-21] Length = 1163 Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 146/436 (33%), Positives = 232/436 (53%), Gaps = 28/436 (6%) Query: 234 LAGQIALLLMRKQFKKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292 +AG++ + ++ KK P+ V+ + L + T Q+ AI D+L D+ Sbjct: 570 IAGELMQVAAQRALKK---APVLEVDEPTYNQFLDRFQYEETDDQDRAIADVLSDLESGK 626 Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352 M R++ GDVG GKT VAL A A Q ++AP +LA+QH+E ++ + V Sbjct: 627 PMDRLVCGDVGFGKTEVALRAAFVAAMNSQQVAVVAPTTLLARQHFENFRQRFSGFPLTV 686 Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412 ++ +P ++ E +A G I++GTHA+ ++ +L LVIVDE+ RFGV + Sbjct: 687 GRLSRLVPAKELKETREGLAKGDVDIVVGTHAILSKQTKFKELGLVIVDEEQRFGVTHKE 746 Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472 KL Q H+L +TATPIPRTL + G ++S I P R ++T ++ D+++ Sbjct: 747 KLKQLRADVHMLTLTATPIPRTLQMAMTGLRELSTIQTPPVDRLAVRTYVM---EWDDMV 803 Query: 473 ERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDI 528 R + +L E G +++ + P+I S+ ++ + LHE+ HG+M Sbjct: 804 MR-EALLREHHRGGQSFIVVPRI-----SDMEAIS---DWLHENVPEVKFVAAHGQMGAG 854 Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588 + E M +F G +L+ATT++E G+D+ A+ III A+ FGLAQL+QLRGRVGR + Sbjct: 855 EIEERMSAFYEGKYDVLLATTIVESGLDLPSANTIIIHRADIFGLAQLYQLRGRVGRSKL 914 Query: 589 ISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK 643 + L Y LS+ + RL VL + + GF +A DL R G +LG +QSG + Sbjct: 915 RAYAYLTYEKDVALSEVAEKRLKVLGDLDSLGAGFQLASHDLDIRGAGNLLGDEQSGHIR 974 Query: 644 ---FLIAQPELHDSLL 656 F + Q L D++L Sbjct: 975 EVGFELYQSMLEDAIL 990 >gi|84623030|ref|YP_450402.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366970|dbj|BAE68128.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 1154 Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 139/381 (36%), Positives = 206/381 (54%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q +AI L+D+ M R++ GDVG GKT VA+ A AA AG Q ++ Sbjct: 604 GFPFEETADQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVL 663 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LA+QHY + + + VE+++ + LE++A G +IIGTH L Q Sbjct: 664 VPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRLLQ 723 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++ L LV+VDE+ RFGV+Q+ L H+L +TATPIPRTL + G D+S Sbjct: 724 PDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSI 783 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R ++T I + + E +R LS G + Y++ +E S+V Sbjct: 784 IATPPPNRLAVQTFITAWDNTLLREAFQR---ELSRGGQLYFLHNDVE--------SIVR 832 Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 L E + I I HG+M + + E VM F+ +L++TT+IE GID+ +A+ II Sbjct: 833 MQRDLSELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTII 892 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619 I A+ FGLAQLHQLRGRVGR + L+ ++ ++ RL + + ++ GF Sbjct: 893 INRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRAMTSDAEKRLEAIASMDELGAGFT 952 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG QSG Sbjct: 953 LATHDLEIRGAGELLGEDQSG 973 >gi|188990859|ref|YP_001902869.1| Transcription-repair coupling factor (TRCF). [Xanthomonas campestris pv. campestris str. B100] gi|167732619|emb|CAP50813.1| Transcription-repair coupling factor (TRCF) [Xanthomonas campestris pv. campestris] Length = 1156 Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 139/381 (36%), Positives = 206/381 (54%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q +AI L+D+ M R++ GDVG GKT VA+ A AA AG Q ++ Sbjct: 606 GFPFEETTDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVL 665 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LA+QHY + + + VE+++ + LE++A G +IIGTH L Q Sbjct: 666 VPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRLLQ 725 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++ L LV+VDE+ RFGV+Q+ L H+L +TATPIPRTL + G D+S Sbjct: 726 PDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSI 785 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R ++T I + + E +R LS G + Y++ +E S+V Sbjct: 786 IATPPPNRLAVQTFITAWDNTLLREAFQR---ELSRGGQLYFLHNDVE--------SIVR 834 Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 L E + I I HG+M + + E VM F+ +L++TT+IE GID+ +A+ II Sbjct: 835 MQRDLSELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTII 894 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619 I A+ FGLAQLHQLRGRVGR + L+ ++ ++ RL + + ++ GF Sbjct: 895 INRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEAIASMDELGAGFT 954 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG QSG Sbjct: 955 LATHDLEIRGAGELLGEDQSG 975 >gi|86130975|ref|ZP_01049574.1| transcription-repair coupling factor [Dokdonia donghaensis MED134] gi|85818386|gb|EAQ39546.1| transcription-repair coupling factor [Dokdonia donghaensis MED134] Length = 1159 Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 136/411 (33%), Positives = 220/411 (53%), Gaps = 20/411 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T Q S +D+ +DM M R++ GDVG GKT VA+ A AV+ G Q I+ P Sbjct: 581 YEDTPDQSSVTEDVKRDMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAILVPT 640 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 ILA QH K+ + + VE + +R+ L + G I+IGTH L ++ Sbjct: 641 TILAYQHARTFKERLKGFPVTVEYLNRFRTAKEKREVLAGLESGAVDIVIGTHQLTSKNV 700 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + L L+++DE+ +FGV + KL + L +TATPIPRTL + + D+S IT Sbjct: 701 IFKDLGLLVIDEEQKFGVAVKDKLKTISETVDTLTLTATPIPRTLQFSLMAARDLSTITT 760 Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P R PI++ ++ + +EVI + + + G + ++I +IE KE +++R Sbjct: 761 PPPNRYPIESNVVRFS--EEVIRDAVSYEIQRGGQVFFIHNRIENIKE--VAGLIQRLVP 816 Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 + + + HG+M E+ M SF NG +L++TT+IE G+DV +A+ I I NA Sbjct: 817 -----DAKVGVGHGQMEGKALEAKMLSFMNGEFDVLVSTTIIESGLDVPNANTIFINNAN 871 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTE---DGFLIAEE 623 +FGL+ LHQ+RGRVGR + + C + PP +++++ R+ L+ GF IA + Sbjct: 872 NFGLSDLHQMRGRVGRSNKKAFCYFI-TPPYSVMTEDARKRIQALEQFSVLGSGFNIAMK 930 Query: 624 DLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDP 671 DL+ R G++LG +QSG F Q L++++ E+ + + DP Sbjct: 931 DLEIRGAGDLLGGEQSGFINEIGFDTYQKILNEAIDELKEDEFAELYKDDP 981 >gi|58581095|ref|YP_200111.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425689|gb|AAW74726.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae KACC10331] Length = 1154 Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 139/381 (36%), Positives = 206/381 (54%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q +AI L+D+ M R++ GDVG GKT VA+ A AA AG Q ++ Sbjct: 604 GFPFEETADQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVL 663 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LA+QHY + + + VE+++ + LE++A G +IIGTH L Q Sbjct: 664 VPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRLLQ 723 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++ L LV+VDE+ RFGV+Q+ L H+L +TATPIPRTL + G D+S Sbjct: 724 PDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSI 783 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R ++T I + + E +R LS G + Y++ +E S+V Sbjct: 784 IATPPPNRLAVQTFITAWDNTLLREAFQR---ELSRGGQLYFLHNDVE--------SIVR 832 Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 L E + I I HG+M + + E VM F+ +L++TT+IE GID+ +A+ II Sbjct: 833 MQRDLSELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTII 892 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619 I A+ FGLAQLHQLRGRVGR + L+ ++ ++ RL + + ++ GF Sbjct: 893 INRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRAMTSDAEKRLEAIASMDELGAGFT 952 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG QSG Sbjct: 953 LATHDLEIRGAGELLGEDQSG 973 >gi|294664095|ref|ZP_06729492.1| transcription-repair coupling factor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292606135|gb|EFF49389.1| transcription-repair coupling factor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 1154 Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 139/381 (36%), Positives = 206/381 (54%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q +AI L+D+ M R++ GDVG GKT VA+ A AA AG Q ++ Sbjct: 604 GFPFEETGDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVL 663 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LA+QHY + + + VE+++ + LE++A G +IIGTH L Q Sbjct: 664 VPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRLLQ 723 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++ L LV+VDE+ RFGV+Q+ L H+L +TATPIPRTL + G D+S Sbjct: 724 PDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSV 783 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R ++T I + + E +R LS G + Y++ +E S+V Sbjct: 784 IATPPPNRLAVQTFITAWDNTLLREAFQR---ELSRGGQLYFLHNDVE--------SIVR 832 Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 L E + I I HG+M + + E VM F+ +L++TT+IE GID+ +A+ II Sbjct: 833 MQRDLSELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTII 892 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619 I A+ FGLAQLHQLRGRVGR + L+ ++ ++ RL + + ++ GF Sbjct: 893 INRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEAIASMDELGAGFT 952 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG QSG Sbjct: 953 LATHDLEIRGAGELLGEDQSG 973 >gi|237751833|ref|ZP_04582313.1| ATP-dependent DNA recombinase RecG [Helicobacter bilis ATCC 43879] gi|229373199|gb|EEO23590.1| ATP-dependent DNA recombinase RecG [Helicobacter bilis ATCC 43879] Length = 614 Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 160/438 (36%), Positives = 224/438 (51%), Gaps = 45/438 (10%) Query: 225 RERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284 +E L + E+ L + QF+ + ++E L+ +PFS T +Q+ AIKDI Sbjct: 175 QEALKFIEIFVYTQRLRKKKTQFRSKFRCNGDLES-----FLKTLPFSLTNAQKEAIKDI 229 Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344 +D+ + RI+ GDVG GKT+V L ++ A ++++MAP ILA+Q +E KKY Sbjct: 230 QEDLKNEFACRRIVMGDVGCGKTMVILASVILAYPQ--KSILMAPTTILAKQLFEEAKKY 287 Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404 I + + N + R+K LE IIGTHAL S LV+ DEQH Sbjct: 288 LPKHINISFVSSSNAKE--RKKPLE------GDFIIGTHALLYRSGDLTDFALVMTDEQH 339 Query: 405 RFGVQQRLKLTQ--------KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456 RFG R KL Q T PH + +ATPIPRT+ + + S I E P +K Sbjct: 340 RFGTNARSKLEQMLEGKDEHGRTKPHNIQFSATPIPRTMAMLKNNVVSFSFIKELPF-KK 398 Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER------FNSL 510 I T II + +IE ++ L++G + I P+IEE ES + + + + SL Sbjct: 399 DIDTRIIDKSGFQRLIEHIRTELTKGHQIAIIYPRIEEADESKEKPIKDSRYAPIPYMSL 458 Query: 511 HE-------HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + HF + HGR D +KE V++ F N +L+ATT+IEVGI + SII Sbjct: 459 KDAESYWIKHFQHVFST-HGR--DKEKEDVLEQFANTESAILLATTMIEVGISLPKLSII 515 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623 +I AE GLA LHQLRGRV R C L H ++ RL T +GF IAE Sbjct: 516 VIVGAERLGLASLHQLRGRVSRNGLKGYCYLYTHQIQNE----RLIRFSKTLNGFDIAEL 571 Query: 624 DLKQRKEGEIL-GIKQSG 640 DL+ R G++L GI QSG Sbjct: 572 DLEYRNSGDLLDGILQSG 589 >gi|169347359|ref|ZP_02866297.1| hypothetical protein CLOSPI_00074 [Clostridium spiroforme DSM 1552] gi|169293976|gb|EDS76109.1| hypothetical protein CLOSPI_00074 [Clostridium spiroforme DSM 1552] Length = 1141 Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 127/378 (33%), Positives = 211/378 (55%), Gaps = 17/378 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T+ Q ++K+I +DM + M R+L GDVG GKT VAL A+ A+ Q + P Sbjct: 601 YELTEDQVRSVKEIKEDMEKPQPMDRLLCGDVGFGKTEVALRAVFKAILGNKQVAFLCPT 660 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 IL+ QHY+ + +N + V ++ + + L+ + G +++GTH + + Sbjct: 661 TILSMQHYKTMLDRFENFPVKVALLNRFTSTKQKNQILKDLKEGNIDLLVGTHRILSKDV 720 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ + L+ +DE+ RFGV+Q+ K+ + VL ++ATPIPRTL ++ +G +S+I Sbjct: 721 EFKDIGLLCIDEEQRFGVKQKEKIKEYRKTIDVLTLSATPIPRTLQMSLMGIRGLSQIET 780 Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R+P++T +I N I ++IER L+ + +++ + SN + ++ Sbjct: 781 PPKNRQPVQTYVIEKNDVLIKQIIER---ELARDGQVFYL-----HNRTSNIANTADKIG 832 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 + + + + HG+M + E VM F N +LI TT+IE GID+ +A+ II+ENA Sbjct: 833 RMVP--GAKVVVGHGKMDKNEIEDVMMRFVNKEYNVLICTTIIETGIDIPNANTIIVENA 890 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623 + FGL+QL+Q++GRVGR + LLY+P L++ + RL +K TE G+ IA Sbjct: 891 DKFGLSQLYQIKGRVGRSNRGAYAYLLYNPSKVLTEEASKRLKAIKEFTELGSGYKIAMR 950 Query: 624 DLKQRKEGEILGIKQSGM 641 DL R G+ILG QSG Sbjct: 951 DLAIRGAGDILGGTQSGF 968 >gi|222111676|ref|YP_002553940.1| transcription-repair coupling factor [Acidovorax ebreus TPSY] gi|221731120|gb|ACM33940.1| transcription-repair coupling factor [Acidovorax ebreus TPSY] Length = 1167 Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 141/385 (36%), Positives = 203/385 (52%), Gaps = 17/385 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 ++ + F T Q++AI ++QDM M R++ GDVG GKT VAL A AV G Sbjct: 604 EQFANDFGFEETADQKAAIHAVVQDMISPRPMDRLVCGDVGFGKTEVALRACFVAVAGGK 663 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q +AP +LA+QHY + + V ++ A++ IA G I++GT Sbjct: 664 QVAFLAPTTLLAEQHYRTLSDRFSKWPVKVAEVSRFRSGKEITAAVKGIADGTVDIVVGT 723 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +S Q+ L L+I+DE+HRFGV+ + + Q VL +TATPIPRT+ + G Sbjct: 724 HKLLSESTQFKNLGLLIIDEEHRFGVRHKEAMKQFRAEVDVLTLTATPIPRTMGMALEGL 783 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D+S I P R IKT + N VI E + L G + Y++ ++E Sbjct: 784 RDLSVIATAPQRRLAIKTFV--RNEGTGVIREAVLRELKRGGQCYFLHNEVE-------- 833 Query: 502 SVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560 ++ R L E + IA+ HG+M + + E VM F +L+ +T+IE GIDV A Sbjct: 834 TIENRRQKLEEILPEARIAVAHGQMPERELERVMRDFVAQRYNILLCSTIIETGIDVPTA 893 Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED-- 616 + III A+ FGLAQLHQLRGRVGR + L+ L+K + RL ++ E+ Sbjct: 894 NTIIISRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDIDGLTKQAQQRLDAIQQMEELG 953 Query: 617 -GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 954 SGFYLAMHDLEIRGAGEVLGESQSG 978 >gi|121595462|ref|YP_987358.1| transcription-repair coupling factor [Acidovorax sp. JS42] gi|120607542|gb|ABM43282.1| transcription-repair coupling factor [Acidovorax sp. JS42] Length = 1164 Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 141/385 (36%), Positives = 203/385 (52%), Gaps = 17/385 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 ++ + F T Q++AI ++QDM M R++ GDVG GKT VAL A AV G Sbjct: 601 EQFANDFGFEETADQKAAIHAVVQDMISPRPMDRLVCGDVGFGKTEVALRACFVAVAGGK 660 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q +AP +LA+QHY + + V ++ A++ IA G I++GT Sbjct: 661 QVAFLAPTTLLAEQHYRTLSDRFSKWPVKVAEVSRFRSGKEITAAVKGIADGTVDIVVGT 720 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +S Q+ L L+I+DE+HRFGV+ + + Q VL +TATPIPRT+ + G Sbjct: 721 HKLLSESTQFKNLGLLIIDEEHRFGVRHKEAMKQFRAEVDVLTLTATPIPRTMGMALEGL 780 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D+S I P R IKT + N VI E + L G + Y++ ++E Sbjct: 781 RDLSVIATAPQRRLAIKTFV--RNEGTGVIREAVLRELKRGGQCYFLHNEVE-------- 830 Query: 502 SVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560 ++ R L E + IA+ HG+M + + E VM F +L+ +T+IE GIDV A Sbjct: 831 TIENRRQKLEEILPEARIAVAHGQMPERELERVMRDFVAQRYNILLCSTIIETGIDVPTA 890 Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED-- 616 + III A+ FGLAQLHQLRGRVGR + L+ L+K + RL ++ E+ Sbjct: 891 NTIIISRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDIDGLTKQAQQRLDAIQQMEELG 950 Query: 617 -GFLIAEEDLKQRKEGEILGIKQSG 640 GF +A DL+ R GE+LG QSG Sbjct: 951 SGFYLAMHDLEIRGAGEVLGESQSG 975 >gi|294340382|emb|CAZ88763.1| Transcription-repair coupling factor (TRCF) (ATP-dependent helicase mfd) [Thiomonas sp. 3As] Length = 1160 Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 151/426 (35%), Positives = 225/426 (52%), Gaps = 25/426 (5%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q +AI ++QDM M R++ GDVG GKT VAL A AV G Q ++AP Sbjct: 608 FEETPDQAAAIHAVVQDMISPKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPT 667 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA+QH E + + + + ++ AL+ +A G I+IGTH L ++ Sbjct: 668 TLLAEQHCETFRNRFADWPVRIAEMSRFRSTKEISAALDGLARGTVDIVIGTHKLLSPTV 727 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ +L LVIVDE+HRFGV+ + L + +L +TATPIPRTL + G D+S I Sbjct: 728 KFDRLGLVIVDEEHRFGVRHKEALKAMRASVDLLTLTATPIPRTLGMALEGLRDLSVIAT 787 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERF 507 P R IKT + R + + +L E G + Y++ ++E ++ R Sbjct: 788 APQKRLAIKTFV----RSESGAVMREAILREIKRGGQVYFLHNEVE--------TIENRR 835 Query: 508 NSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 L E + I I HG+M + D E VM F +L+ TT+IE GIDV A+ I++ Sbjct: 836 RQLEELVPEARIEIAHGQMHERDLERVMRDFHAQRFNILLCTTIIETGIDVPSANTIVMA 895 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIA 621 A+ FGLAQLHQLRGRVGR + LL L+K + RL ++ E+ GF +A Sbjct: 896 RADKFGLAQLHQLRGRVGRSHHQAYAYLLVPDVQSLTKQASQRLEAIQQMEELGSGFYLA 955 Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681 DL+ R GE+LG +QSG + + Q L++ +L A K + ++PDL + G + Sbjct: 956 MHDLEIRGAGEVLGEQQSGNMQEIGFQ--LYNDMLGEAVKALR--AGREPDLLNPLGVTT 1011 Query: 682 RILLYL 687 I L++ Sbjct: 1012 EINLHV 1017 >gi|153854681|ref|ZP_01995931.1| hypothetical protein DORLON_01929 [Dorea longicatena DSM 13814] gi|149752785|gb|EDM62716.1| hypothetical protein DORLON_01929 [Dorea longicatena DSM 13814] Length = 1126 Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 209/371 (56%), Gaps = 15/371 (4%) Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 Q AI+ + +DM M R++ GDVG GKT VA+ A AV+ Q V + P ILAQ Sbjct: 568 DQMMAIEAVKKDMESHKIMDRLVCGDVGFGKTEVAIRAAFKAVQESKQVVYLVPTTILAQ 627 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 QHY + ++ + ++++ A ++K +E G IIIGTH + + +++ L Sbjct: 628 QHYRTFVQRMKDFPVRIDLMCRFRTPAQQKKTVEDAKKGLVDIIIGTHRVLSEDMKFKDL 687 Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 L+I+DE+ RFGVQ + K+ + VL +TATPIPRTL ++ +G D+S + E P R Sbjct: 688 GLLIIDEEQRFGVQHKEKIKKLKENVDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPNDR 747 Query: 456 KPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 PI+T ++ N DE++ E ++ + + Y++ ++E+ E V L Sbjct: 748 MPIQTYVMEYN--DEMVREAIERECARQGQVYYVYNRVEDIDE-----VAGHVQKLVPDL 800 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 T +A HG+M + + E +M F NG +L++TT+IE G+D+ +A+ +II +A+ GL+ Sbjct: 801 T--VAYAHGQMREHELERIMYDFINGEIDVLVSTTIIETGLDISNANTMIIHDADRLGLS 858 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629 QL+QLRGRVGR ++ LLY L + + RL+ ++ D GF IA DL+ R Sbjct: 859 QLYQLRGRVGRSNRMAYAFLLYRRDKMLKEVAEKRLAAIREFTDLGSGFKIAMRDLEIRG 918 Query: 630 EGEILGIKQSG 640 G +LG +Q G Sbjct: 919 AGNLLGAEQHG 929 >gi|15892836|ref|NP_360550.1| transcription-repair coupling factor [Rickettsia conorii str. Malish 7] gi|81854092|sp|Q92H58|MFD_RICCN RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|15620021|gb|AAL03451.1| transcription-repair coupling factor [Rickettsia conorii str. Malish 7] Length = 1122 Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 151/468 (32%), Positives = 254/468 (54%), Gaps = 38/468 (8%) Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQ--KILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 +IAL L++ K+++ +VE + + K N PFS T+ Q AI DI +D+ M Sbjct: 541 EIALHLIQIAAKRKLNSSASVEFDLEEYDKFCANFPFSETEDQLIAINDIKEDLRNGMLM 600 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHY----EFIKKYTQ 346 R++ GDVG GKT VA+ A+ ++ Q ++ P IL QH+ E K + Sbjct: 601 DRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQHFSRFIERFKGFGL 660 Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 N + + +I+ + R + + G+ +IIIGTH+L +I+++ L L+I+DE+ F Sbjct: 661 NIKQLSSVISSKEAKIIRSE----LESGKINIIIGTHSLLHKNIKFFNLKLLIIDEEQHF 716 Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466 GV Q+ L ++ HVL M+ATPIPRTL ++ G ++S I P R + T ++P Sbjct: 717 GVGQKEFLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVHTSVMP-- 774 Query: 467 RIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523 D VI R +L E G +++++ P+I++ + ++ + + IA +G Sbjct: 775 -YDPVIIR-DALLREHFRGGRSFYVVPRIKD-----IEDIAKQLKQIVPELSYKIA--YG 825 Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583 +M+ + VM F G +L++TT+IE GID+ +A+ +II NA+ GL+QL+QLRGR+ Sbjct: 826 KMTPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANTMIIHNADMLGLSQLYQLRGRI 885 Query: 584 GRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGIKQ 638 GRG+ L H ++ +S RL +++N+ GF IA D+ R G ++G +Q Sbjct: 886 GRGKMRGYAYLTVASHKKMTSHSLRRLEIIQNSCALGSGFTIASRDMDLRGFGNLIGEEQ 945 Query: 639 SGMPKFLIAQPELHDSLLE--IARKDAKHILTQDPDLTSVR-GQSIRI 683 SG K + EL+ +LE IA + I+++ P + ++ G S+ I Sbjct: 946 SGQIKEV--GTELYQEMLEEQIAIFKDESIVSEQPFIPTINLGLSVFI 991 >gi|163753497|ref|ZP_02160621.1| transcription-repair coupling factor [Kordia algicida OT-1] gi|161327229|gb|EDP98554.1| transcription-repair coupling factor [Kordia algicida OT-1] Length = 1095 Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 134/404 (33%), Positives = 216/404 (53%), Gaps = 16/404 (3%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T Q A +D+ DM + M R++ GDVG GKT VA+ A AV+ G Q I+ P Sbjct: 535 YEDTPDQSKATQDVKADMESERPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAILVPT 594 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 ILA QH++ + + I ++ + R + L+ + G I+IGTH L ++ Sbjct: 595 TILAFQHFKTFSERLKEMPITIDYLNRFRSTKQRNEVLKGLEDGSVDIVIGTHQLVNKAV 654 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L L+IVDE+ +FGV + KL L +TATPIPRTL + + D+S IT Sbjct: 655 KFKDLGLLIVDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTLQFSLMAARDLSVITT 714 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P R PI+T +I + + + + + G + ++I +IE KE +++R Sbjct: 715 PPPNRYPIETHVIRFQE-ETIRDAVSYEIQRGGQVFFIHNRIENIKE--VAGMIQRLVP- 770 Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 + I I HG+M E +M +F NG +L++TT+IE G+DV +A+ I I NA + Sbjct: 771 ----DAKIGIGHGQMEGKKLEKLMLAFMNGEFDVLVSTTIIESGLDVPNANTIFINNANN 826 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVL---KNTEDGFLIAEEDL 625 FGL+ LHQ+RGRVGR + + C + P +++++ R++ L GF IA +DL Sbjct: 827 FGLSDLHQMRGRVGRSNKKAFCYFITPPDSVMTQDARKRINALVQFSTLGSGFNIAMKDL 886 Query: 626 KQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHI 666 + R G++LG +QSG F Q L++++ E+ + K + Sbjct: 887 EIRGAGDLLGGEQSGFINEIGFDTYQKILNETIEELKENEFKEL 930 >gi|193213782|ref|YP_001994981.1| transcription-repair coupling factor [Chloroherpeton thalassium ATCC 35110] gi|193087259|gb|ACF12534.1| transcription-repair coupling factor [Chloroherpeton thalassium ATCC 35110] Length = 1110 Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 135/415 (32%), Positives = 227/415 (54%), Gaps = 24/415 (5%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q SAI+ I DM M R++ GD G GKT VA+ A AVE+G Q ++ P Sbjct: 537 FDETPDQMSAIESIKADMEAVAPMDRLICGDAGFGKTEVAMRAAFKAVESGKQVAVLVPT 596 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 ILA QH+ K QN + VE+++ +P+ ++ + I G+ I++GTH + + Sbjct: 597 TILAHQHFNTFKLRFQNFPMRVEVLSRFVPKKSQKAVIAEIGEGKVDIVVGTHRIVSKDV 656 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L L+I+DE+ FGV + KL + + L+++ATPIPRTL + +G D+S I+ Sbjct: 657 KFTDLGLLIIDEEQHFGVAAKEKLREDFPSVDTLVLSATPIPRTLQFSMMGARDLSIIST 716 Query: 451 KPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R+P++TVI I + I R + G + +++ +I S+ E + Sbjct: 717 PPKNRQPVETVIHEFDAEMIKQAIGR---EIGRGGQVFFLHNRI--------NSISEMYE 765 Query: 509 SLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + + F + + + HG+M + E+VM F +L++T ++ G+D+ +A+ +II Sbjct: 766 LVKKLFPRARVGVAHGQMPTKELEAVMLDFIQKELDVLVSTAIVGSGLDISNANTMIINR 825 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS---KNSYTRLSVLKN-TE--DGFLIA 621 A+ FGL+ L+QLRGRVGR ++ + L+ PPLS +++ RL+V++ TE GF +A Sbjct: 826 ADMFGLSDLYQLRGRVGRSDK-KAYAYLFTPPLSTLKQDALQRLAVIEAYTELGSGFSVA 884 Query: 622 EEDLKQRKEGEILGIKQSGM---PKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673 DL R G +LG +QSG F + Q L +++ E+ + ++I + L Sbjct: 885 MRDLDIRGAGNLLGAEQSGFIFDLGFDVYQKILEEAVSELKSTEFQNIFAESERL 939 >gi|289208374|ref|YP_003460440.1| transcription-repair coupling factor [Thioalkalivibrio sp. K90mix] gi|288944005|gb|ADC71704.1| transcription-repair coupling factor [Thioalkalivibrio sp. K90mix] Length = 1157 Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 136/382 (35%), Positives = 204/382 (53%), Gaps = 23/382 (6%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 PF T Q AI +L DM+ M R++ GDVG GKT VA+ A AV+ Q ++ Sbjct: 605 FPFEETADQLQAIDAVLTDMADTRPMDRVICGDVGFGKTEVAMRAAFVAVQNNRQVAVLV 664 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +LAQQH++ + + +E ++ + LE + G+ I+IGTH L Q Sbjct: 665 PTTLLAQQHHQNFSDRFADWPVRIESLSRFRSAKQQAAVLEGLKEGKVDIVIGTHKLLQS 724 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 ++ + L LVIVDE+ RFGV+ + L + +L MTATPIPRTL + G D+S I Sbjct: 725 NLDFSNLGLVIVDEEQRFGVRHKEALKRLRAEVDMLTMTATPIPRTLNMALSGLRDLSVI 784 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSV 503 T P R IKT + N D +I+ + L E G + Y++ ++ E+ R++ Sbjct: 785 TTPPRERLAIKTFVNEWN--DAIIQ--EACLREIRRGGQVYFVHNEVNTIERMAEQIRAL 840 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 + + I I HG+M + + E VM F + +L+ +T+IE GIDV A+ I Sbjct: 841 LP---------GARIGIAHGQMRERELEQVMLDFYHRRYNILVCSTIIETGIDVPTANTI 891 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GF 618 ++ A+ GLAQ+HQLRGRVGR + L+ P +S ++ RL + + ED GF Sbjct: 892 VMNRADKLGLAQMHQLRGRVGRSHHRAYAYLVTPPEKAMSADARKRLEAIASLEDLGVGF 951 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG +QSG Sbjct: 952 TLASHDLEIRGAGELLGDEQSG 973 >gi|164688875|ref|ZP_02212903.1| hypothetical protein CLOBAR_02523 [Clostridium bartlettii DSM 16795] gi|164602079|gb|EDQ95544.1| hypothetical protein CLOBAR_02523 [Clostridium bartlettii DSM 16795] Length = 1131 Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 145/430 (33%), Positives = 225/430 (52%), Gaps = 21/430 (4%) Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EWT + A+ + +++ + L R+Q K G + + ++ P+ T+ Q Sbjct: 565 EWTKAKAKVKREIEDMTKDLVELYAKREQIK---GYKFSKDTVWQKEFESMFPYEETEDQ 621 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 AIK+ +DM M R++ GDVG GKT VA+ A A Q I+ P ILAQQH Sbjct: 622 LKAIKETKKDMESSKVMDRLICGDVGYGKTEVAIRAAFKACMDQKQVAILVPTTILAQQH 681 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y K+ N I VE+++ +R+ + G I+IGTH + D I L L Sbjct: 682 YNTFKQRFANYPIRVEVLSRFKTAKQQREIINDARKGLVDILIGTHRIISDDINLPNLGL 741 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 V++DE+ RFGV+ + L + VL ++ATPIPRTL ++ G D+S I E P R P Sbjct: 742 VVIDEEQRFGVKHKESLKKIKNTVDVLTLSATPIPRTLHMSLSGIRDMSVIEEPPQERHP 801 Query: 458 IKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515 + T + I + IER ++ G + +++ ++E +E S+V+R Sbjct: 802 VITYVAEAKESIIQDEIER---EIARGGQVFFVYNRVEHIEE--MASMVQRLVP-----E 851 Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + +A+ HGRM+ E+++ F N +L+ TT++E G+D+ +A+ +II +A+ GLAQ Sbjct: 852 AKVAVAHGRMTSKTLENIILGFLNKEYDVLVCTTIVETGMDISNANTMIIYDADKMGLAQ 911 Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630 L+QLRGRVGR L+Y LS+ + RL ++ TE GF IA DL+ R Sbjct: 912 LYQLRGRVGRSSRQGYAYLMYEKDKVLSEVAEKRLKAIREFTEFGSGFKIAMRDLEIRGA 971 Query: 631 GEILGIKQSG 640 G ILG +Q G Sbjct: 972 GNILGSQQHG 981 >gi|302383042|ref|YP_003818865.1| transcription-repair coupling factor [Brevundimonas subvibrioides ATCC 15264] gi|302193670|gb|ADL01242.1| transcription-repair coupling factor [Brevundimonas subvibrioides ATCC 15264] Length = 1150 Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 135/414 (32%), Positives = 219/414 (52%), Gaps = 16/414 (3%) Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 ++ G IAL R +G I + + P+ T Q +AI D+L+D+ + Sbjct: 566 DMAEGLIALAAKRAL---RVGEAITPPHGLFDEFCARFPYDETDDQLNAIGDVLEDLGKG 622 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351 M R++ GDVG GKT VA+ A G Q I+ P +LA+QH++ + I Sbjct: 623 VPMDRLICGDVGFGKTEVAIRAAFVVAMTGQQVAIVCPTTLLARQHFKTFSERFAGWPIK 682 Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411 V ++ + + + G I++GTHA+ + + + L LVIVDE+ FGV+ + Sbjct: 683 VRHLSRMVTARDAAETRAGLKDGSFEIVVGTHAVLSEQVGFKDLGLVIVDEEQHFGVKHK 742 Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471 KL H+L +TATPIPRTL + G ++S I P R ++T + P + + V Sbjct: 743 EKLKSLRADVHLLTLTATPIPRTLQMALSGIREMSIIATPPVDRLAVRTYVAPWDAV-MV 801 Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531 E L G +A+++CP++ + + +E F + + + HG+MS E Sbjct: 802 REALLREKYRGGQAFYVCPRLSDLPD------IEEFLRVQVPEIKFV-VGHGQMSPTQLE 854 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 VM +F +G+ +L++TT++E GID+ A+ +I+ A+ FGLAQLHQ+RGR+GR + + Sbjct: 855 DVMSAFYDGSYDVLVSTTIVESGIDIPTANTLIVHKADMFGLAQLHQIRGRIGRSKARAF 914 Query: 592 CILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 L P PL+ ++ RL VL++ ++ GF +A DL QR G +LG +QSG Sbjct: 915 AYLTVDPKRPLTLSAERRLQVLQSLDNLGAGFQLASHDLDQRGGGNLLGDEQSG 968 >gi|51598876|ref|YP_073064.1| transcription-repair coupling factor [Borrelia garinii PBi] gi|51573447|gb|AAU07472.1| transcription-repair coupling factor [Borrelia garinii PBi] Length = 1124 Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 135/380 (35%), Positives = 210/380 (55%), Gaps = 21/380 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +AIK+I +DM M R+L GDVG GKT VA+ A AV Q ++++P Sbjct: 580 PYDETPDQITAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSP 639 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILA+QH+ KK +N + +E+++ + ++ L+ + G+ IIIGTH + Sbjct: 640 TTILAEQHFNTFKKRFKNFPVKIEVLSRFIKNNSEKRILKELKSGEIDIIIGTHKILSKK 699 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 L L+I+DE+ RFGV+++ KL + + L ++ATPIPR+L ++ + DIS + Sbjct: 700 FTCKNLGLIIIDEEQRFGVKEKEKLKEIRISVDCLTLSATPIPRSLHMSLIKLRDISVLK 759 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R I+ + + I IE LS + + + IEE + Sbjct: 760 IPPKNRVKIEAYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEE---------LHYL 807 Query: 508 NSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 +L E T + IAIIHG+++ + E++M +F ++L+ATT+IE GID+ +A+ III Sbjct: 808 KTLIEKLTPYARIAIIHGKLTGDEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIII 867 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLI 620 NA FGLAQL+QL+GRVGRG + + LY L++ S RL + D GF I Sbjct: 868 NNANKFGLAQLYQLKGRVGRGSKKAYAYFLYQDSEKLNERSIERLRAITEFSDLGAGFKI 927 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A +D++ R G +LG +Q G Sbjct: 928 AMKDMEIRGVGNLLGREQHG 947 >gi|91205666|ref|YP_538021.1| transcription-repair coupling factor [Rickettsia bellii RML369-C] gi|123388111|sp|Q1RI82|MFD_RICBR RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|91069210|gb|ABE04932.1| Transcription-repair coupling factor [Rickettsia bellii RML369-C] Length = 1120 Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 144/437 (32%), Positives = 234/437 (53%), Gaps = 31/437 (7%) Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQ--KILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 +IAL LM+ K+++ +E + + K PF+ T+ Q +AI DI +D+S M Sbjct: 539 EIALHLMQIAAKRKLNTTAAIEFDLEEYDKFCAKFPFTETEDQLNAINDIREDLSNGMLM 598 Query: 295 LRILQGDVGSGKTLVALIA--MAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350 R++ GDVG GKT VA+ A M A E Q ++ P IL QH+ + +++ + Sbjct: 599 DRLICGDVGFGKTEVAMRAAFMVAKSLNENSPQVAVVVPTTILCSQHFARFTERFKDSDL 658 Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410 ++ ++ + + + G+ +IIIGTH+L ++ L L+I+DE+ FGV Q Sbjct: 659 NIKQLSSVVSSKEAKIVRSELESGKINIIIGTHSLLHKVTKFCNLKLLIIDEEQHFGVGQ 718 Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470 + L ++ HVL M+ATPIPRTL ++ G ++S I P R ++T ++P D Sbjct: 719 KEFLKSLKSSTHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTSVMP---FDP 775 Query: 471 VIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRM 525 VI R +L E G K++++ P+I E E + +V S + HG+M Sbjct: 776 VIIR-DALLHEHFRGGKSFFVVPRINDIEDIEKQLKQIVPEL---------SYKVAHGKM 825 Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585 S + +M F G +LI+TT+IE GID+ DA+ +II A+ GL+QL+QLRGR+GR Sbjct: 826 SPNKIDEIMSEFYAGKFDILISTTIIESGIDIQDANTMIIHKADMLGLSQLYQLRGRIGR 885 Query: 586 GE--EISSCILLYHPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGIKQSG 640 G+ + L H ++ +S RL +++N+ GF IA D+ R G ++G +QSG Sbjct: 886 GKMRGYAYLTLPSHKKMTPHSLRRLEIIQNSCALGSGFTIASHDMDLRGFGNLIGEEQSG 945 Query: 641 MPKFLIAQPELHDSLLE 657 + + EL+ +LE Sbjct: 946 QIREV--GTELYQEMLE 960 >gi|94495555|ref|ZP_01302135.1| transcription-repair coupling factor [Sphingomonas sp. SKA58] gi|94424943|gb|EAT09964.1| transcription-repair coupling factor [Sphingomonas sp. SKA58] Length = 1169 Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 146/406 (35%), Positives = 224/406 (55%), Gaps = 27/406 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q+ AI D+++D+ M R++ GDVG GKT VAL A A AG Q V++ P Sbjct: 620 PYQETDDQDRAISDVIEDLGAGKPMDRLVCGDVGFGKTEVALRAAFVAAMAGMQVVVICP 679 Query: 330 IGILAQQHY-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 +LA+QH+ F+ ++ + I + ++ +P + +A G I++GTHAL Sbjct: 680 TTLLARQHHMNFVDRF-RGFPIEIGRLSRLVPDKEAKAVKAGLADGSIDIVVGTHALLAK 738 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 I + +L LVIVDE+ RFGV + +L T HVL +TATPIPRTL + G ++S I Sbjct: 739 GIDFKRLGLVIVDEEQRFGVTHKERLKGLKTDVHVLTLTATPIPRTLQMAMSGLRELSVI 798 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505 P R ++T ++P D V+ R + +L E G +++++ P+I + E VE Sbjct: 799 QTPPVDRLAVRTYVMP---WDGVVIR-EALLREHYRGGQSFFVVPRIADLTE------VE 848 Query: 506 RFNSLHEHFTSSIAII-HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 F L I+ HG+MS D E M +F + +L++TT++E G+D+ A+ +I Sbjct: 849 EF--LRNEVPEVKPIVAHGQMSATDVEERMSAFYDKRYDVLLSTTIVESGLDIPSANTLI 906 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTED---GF 618 I A+ FGLAQL+QLRGRVGR + + + P ++ + RL VL + + GF Sbjct: 907 IHRADRFGLAQLYQLRGRVGR-SKTRAYAYMTTPANRIITDTAEKRLKVLSDLDTLGAGF 965 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 +A DL R G ++G +QSG K + EL+ S+LE A DAK Sbjct: 966 QLASHDLDIRGAGNLVGDEQSGHIKEV--GFELYQSMLEDAILDAK 1009 >gi|21232129|ref|NP_638046.1| transcription-repair coupling factor [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21113878|gb|AAM41970.1| transcription-repair coupling factor [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 1155 Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 139/381 (36%), Positives = 206/381 (54%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q +AI L+D+ M R++ GDVG GKT VA+ A AA AG Q ++ Sbjct: 605 GFPFEETTDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVL 664 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LA+QHY + + + VE+++ + LE++A G +IIGTH L Q Sbjct: 665 VPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRLLQ 724 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++ L LV+VDE+ RFGV+Q+ L H+L +TATPIPRTL + G D+S Sbjct: 725 PDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSI 784 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R ++T I + + E +R LS G + Y++ +E S+V Sbjct: 785 IATPPPNRLAVQTFITAWDNTLLREAFQR---ELSRGGQLYFLHNDVE--------SIVR 833 Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 L E + I I HG+M + + E VM F+ +L++TT+IE GID+ +A+ II Sbjct: 834 MQRDLSELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTII 893 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619 I A+ FGLAQLHQLRGRVGR + L+ ++ ++ RL + + ++ GF Sbjct: 894 INRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEAIASMDELGAGFT 953 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG QSG Sbjct: 954 LATHDLEIRGAGELLGEDQSG 974 >gi|325916554|ref|ZP_08178820.1| transcription-repair coupling factor Mfd [Xanthomonas vesicatoria ATCC 35937] gi|325537227|gb|EGD08957.1| transcription-repair coupling factor Mfd [Xanthomonas vesicatoria ATCC 35937] Length = 1155 Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 139/381 (36%), Positives = 206/381 (54%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q +AI L+D+ M R++ GDVG GKT VA+ A AA AG Q ++ Sbjct: 605 GFPFEETTDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVL 664 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LA+QHY + + + VE+++ + LE++A G +IIGTH L Q Sbjct: 665 VPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRLLQ 724 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++ L LV+VDE+ RFGV+Q+ L H+L +TATPIPRTL + G D+S Sbjct: 725 PDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSI 784 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R ++T I + + E +R LS G + Y++ +E S+V Sbjct: 785 IATPPPNRLAVQTFITAWDNTLLREAFQR---ELSRGGQLYFLHNDVE--------SIVR 833 Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 L E + I I HG+M + + E VM F+ +L++TT+IE GID+ +A+ II Sbjct: 834 MQRDLAELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTII 893 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619 I A+ FGLAQLHQLRGRVGR + L+ ++ ++ RL + + ++ GF Sbjct: 894 INRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEAIASMDELGAGFT 953 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG QSG Sbjct: 954 LATHDLEIRGAGELLGEDQSG 974 >gi|302388692|ref|YP_003824513.1| transcription-repair coupling factor [Thermosediminibacter oceani DSM 16646] gi|302199320|gb|ADL06890.1| transcription-repair coupling factor [Thermosediminibacter oceani DSM 16646] Length = 1177 Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 133/378 (35%), Positives = 208/378 (55%), Gaps = 15/378 (3%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 P+ T Q +AI+++ +DM M R+L GDVG GKT VAL A AV Q ++ Sbjct: 625 FPYEETPDQLTAIEEVKRDMESDKCMDRLLCGDVGYGKTEVALRAAFKAVMDAKQVAVLV 684 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P ILA+QHY + + VE+I+ +A ++ ++ + +G IIIGTH L Q Sbjct: 685 PTTILAEQHYRTFSERFAPFPVRVEVISRFKSKAEQKAIIKDLKNGAIDIIIGTHRLLQK 744 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 +++ L L+I+DE+ RFGV + K+ Q VL MTATPIPRTL + G D+S + Sbjct: 745 DVKFKDLGLLIIDEEQRFGVSHKEKIKQLKKNVDVLTMTATPIPRTLHMAMTGIRDMSVM 804 Query: 449 TEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R PI+T ++ + D +I + + LS G + Y++ ++ E +R Sbjct: 805 ETPPENRYPIQTYVVEYS--DSLIRDAIMRELSRGGQVYYVYNRVNTIYEE-----AKRL 857 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 ++L + IA+ HG+M + + E VM F +L+ TT+IE G+D+ + + +I+ + Sbjct: 858 SALVPE--ARIAVAHGQMHENELEEVMMDFYEHRYDVLVCTTIIETGLDIPNVNTLIVIS 915 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAE 622 A+ FGL+QL+QLRGRVGR + Y LS+ + RL+ +++ + GF IA Sbjct: 916 ADRFGLSQLYQLRGRVGRSSTQAFAYFTYKKDKTLSEAAEKRLAAIRDFTEFGAGFKIAL 975 Query: 623 EDLKQRKEGEILGIKQSG 640 DL+ R G ILG +Q G Sbjct: 976 RDLEIRGAGNILGTEQHG 993 >gi|188575614|ref|YP_001912543.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520066|gb|ACD58011.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae PXO99A] Length = 1154 Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 139/381 (36%), Positives = 206/381 (54%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q +AI L+D+ M R++ GDVG GKT VA+ A AA AG Q ++ Sbjct: 604 GFPFEETADQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVL 663 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LA+QHY + + + VE+++ + LE++A G +IIGTH L Q Sbjct: 664 VPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRLLQ 723 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++ L LV+VDE+ RFGV+Q+ L H+L +TATPIPRTL + G D+S Sbjct: 724 PDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSI 783 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R ++T I + + E +R LS G + Y++ +E S+V Sbjct: 784 IATPPPNRLAVQTFITAWDNTLLREAFQR---ELSRGGQLYFLHNDVE--------SIVR 832 Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 L E + I I HG+M + + E VM F+ +L++TT+IE GID+ +A+ II Sbjct: 833 MQRDLSELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTII 892 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619 I A+ FGLAQLHQLRGRVGR + L+ ++ ++ RL + + ++ GF Sbjct: 893 INRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRAMTSDAEKRLEAIASMDELGAGFT 952 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG QSG Sbjct: 953 LATHDLEIRGAGELLGEDQSG 973 >gi|167747443|ref|ZP_02419570.1| hypothetical protein ANACAC_02163 [Anaerostipes caccae DSM 14662] gi|317471172|ref|ZP_07930543.1| transcription-repair coupling factor [Anaerostipes sp. 3_2_56FAA] gi|167652805|gb|EDR96934.1| hypothetical protein ANACAC_02163 [Anaerostipes caccae DSM 14662] gi|316901387|gb|EFV23330.1| transcription-repair coupling factor [Anaerostipes sp. 3_2_56FAA] Length = 1175 Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 134/426 (31%), Positives = 226/426 (53%), Gaps = 25/426 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q +AI+D+ +DM M R++ GDVG GKT VA+ A AV G Q + P Sbjct: 626 PYEETQDQLNAIEDVKRDMESTKIMDRLICGDVGYGKTEVAIRAAFKAVTNGKQVAYLVP 685 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHY + QN + V +++ +++ +E + G ++IGTH L Sbjct: 686 TTILAQQHYNTFCERFQNYPMTVRVMSRFCTPREQKETMEGLKKGIVDVVIGTHRLLSKD 745 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 ++Y L L+I+DE+ RFGV + K+ VL ++ATPIPRTL ++ +G D+S + Sbjct: 746 VKYKDLGLLIIDEEQRFGVGHKEKIKTMKKDVDVLSLSATPIPRTLHMSLIGIRDMSILE 805 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 E P R+ I+T ++ N + E + R ++ G + Y++ ++ +N + Sbjct: 806 EPPHDRRAIQTYVMEYNEELVKEAVHR---EMTRGGQVYYVYNRV-----NNIAEITSEL 857 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 L + + +A HG+M + + E++M F +L++TT+IE G+D+ + + +II + Sbjct: 858 QKLLPN--AKVAFAHGQMRERELENIMMQFMEKEIDVLVSTTIIETGLDIPNVNTMIIHD 915 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622 A GL+QL+QLRGRVGR + L+Y L + + RL ++ D G+ IA Sbjct: 916 ANQLGLSQLYQLRGRVGRSNRNAFAFLMYKRDTLLKETAEKRLQAIREFTDLGSGYKIAM 975 Query: 623 EDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679 DL+ R G +LG +QSG + + + L+D++L + K L++D D + Sbjct: 976 RDLEIRGAGNLLGEEQSGHMEAVGYDLYCKMLNDAVLRL-----KGELSEDTDFDTTLDL 1030 Query: 680 SIRILL 685 +I L Sbjct: 1031 NIDAFL 1036 >gi|66767742|ref|YP_242504.1| transcription-repair coupling factor [Xanthomonas campestris pv. campestris str. 8004] gi|66573074|gb|AAY48484.1| transcription-repair coupling factor [Xanthomonas campestris pv. campestris str. 8004] Length = 1155 Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 139/381 (36%), Positives = 206/381 (54%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q +AI L+D+ M R++ GDVG GKT VA+ A AA AG Q ++ Sbjct: 605 GFPFEETTDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVL 664 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LA+QHY + + + VE+++ + LE++A G +IIGTH L Q Sbjct: 665 VPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRLLQ 724 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++ L LV+VDE+ RFGV+Q+ L H+L +TATPIPRTL + G D+S Sbjct: 725 PDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSI 784 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R ++T I + + E +R LS G + Y++ +E S+V Sbjct: 785 IATPPPNRLAVQTFITAWDNTLLREAFQR---ELSRGGQLYFLHNDVE--------SIVR 833 Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 L E + I I HG+M + + E VM F+ +L++TT+IE GID+ +A+ II Sbjct: 834 MQRDLSELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTII 893 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619 I A+ FGLAQLHQLRGRVGR + L+ ++ ++ RL + + ++ GF Sbjct: 894 INRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEAIASMDELGAGFT 953 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG QSG Sbjct: 954 LATHDLEIRGAGELLGEDQSG 974 >gi|29345662|ref|NP_809165.1| transcription-repair coupling factor [Bacteroides thetaiotaomicron VPI-5482] gi|253567649|ref|ZP_04845060.1| transcription-repair coupling factor [Bacteroides sp. 1_1_6] gi|29337554|gb|AAO75359.1| transcription-repair coupling factor [Bacteroides thetaiotaomicron VPI-5482] gi|251841722|gb|EES69802.1| transcription-repair coupling factor [Bacteroides sp. 1_1_6] Length = 1127 Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 138/410 (33%), Positives = 217/410 (52%), Gaps = 19/410 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + Q ++E G + + + +++ + + T Q A ++ DM M R++ Sbjct: 526 LIKLYSQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSKATMEVKADMESDRPMDRLVC 585 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LA QH++ ++ + VE ++ Sbjct: 586 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRERLKGLPCRVEYLSRAR 645 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A + L+ + G+ I+IGTH + +Q+ L L+I+DE+ +FGV + KL Q Sbjct: 646 TAAQSKAVLKGLKEGEVSILIGTHRILGKDVQFKDLGLLIIDEEQKFGVSVKEKLRQLKV 705 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478 L MTATPIPRTL + +G D+S I+ P R PI+T + N +EVI + + Sbjct: 706 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFN--EEVITDAINFE 763 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537 +S + +++ +I E + ++ER H +AI HG+M E ++ F Sbjct: 764 MSRNGQVFFVNNRIANLPE--LKVMIER------HIPDCRVAIGHGQMEPTQLEQIIFDF 815 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 N +L+ATT+IE GID+ +A+ III A++FGL+ LHQ+RGRVGR + + C LL Sbjct: 816 VNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-A 874 Query: 598 PPLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 PPLS RL ++N D G IA +DL R G +LG +QSG Sbjct: 875 PPLSSLTAEGKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGF 924 >gi|325106020|ref|YP_004275674.1| transcription-repair coupling factor [Pedobacter saltans DSM 12145] gi|324974868|gb|ADY53852.1| transcription-repair coupling factor [Pedobacter saltans DSM 12145] Length = 1116 Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 134/402 (33%), Positives = 212/402 (52%), Gaps = 19/402 (4%) Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 K ++G + + + ++ + + T QE A D+ +DM ++ M R++ GDVG GKT Sbjct: 535 KSQVGFAFSPDTYLQNELEASFIYEDTPDQEKATADVKKDMESEHPMDRLVCGDVGFGKT 594 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 VA+ A A G Q I+ P ILA QHY+ + ++ + ++ I + Sbjct: 595 EVAIRAAFKAATEGKQVAILVPTTILAMQHYKTFSERLKDFPVRIDYINRFKTTKQVKGT 654 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 LE + G+ I+IGTH L +++ L L+I+DE+ +FGV + KL Q L +T Sbjct: 655 LEALKEGKVEILIGTHRLVAKDVKFKDLGLLIIDEEQKFGVSVKEKLKQFRANVDTLTLT 714 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKA 485 ATPIPRTL + +G D+S I P R+P+ T + N I E +E L + Sbjct: 715 ATPIPRTLHFSLMGARDLSIIQTPPPNRQPVDTELHVFNEKLIKEAVE---FELDREGQV 771 Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545 ++I ++ + ++ ++++ + IAI HG++ E +M F G +L Sbjct: 772 FFIHNRVADLRQ--LGGLIQKLVP-----KARIAIAHGQLEGDKLEDIMLDFIEGKYDVL 824 Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK--- 602 +ATT+IE G+DV +A+ I+I +A FGL+ LHQ+RGRVGR + + C LL PPLS Sbjct: 825 VATTIIEAGLDVPNANTILINHAHMFGLSDLHQMRGRVGRSNKKAFCYLL-SPPLSTLTP 883 Query: 603 NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 + RLS ++ D GF +A DL R G +LG +QSG Sbjct: 884 EARKRLSAIEEFSDLGSGFNVAMRDLDIRGSGNLLGAEQSGF 925 >gi|27904769|ref|NP_777895.1| transcription-repair coupling factor [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46396116|sp|Q89AK2|MFD_BUCBP RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|27904167|gb|AAO27000.1| transcription-repair coupling factor [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 697 Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 138/382 (36%), Positives = 206/382 (53%), Gaps = 25/382 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 PF+ T Q+SAI +L DM + M R++ GDVG GKT VA+ A AV Q I+ P Sbjct: 151 PFTLTPDQDSAINSVLSDMYKSTPMDRLVCGDVGFGKTEVAMRATFLAVCNQKQVAILVP 210 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQH+ + +EI++ + + + + G H++IGTH + + Sbjct: 211 TTLLAQQHFNNFTLRFKYWSTKIEILSRFQSETKCNEIINNVNIGNVHVLIGTHKILLKN 270 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +++ L L+IVDE+HRFGV + ++ + VL +TATPIPRTL + +G D+S I Sbjct: 271 LKWKNLGLLIVDEEHRFGVHHKEQIKLISNNIDVLTLTATPIPRTLNMAFVGIRDLSIIA 330 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVV 504 P R +KT + + VI K +L E G + Y+I + E+K+ + +V Sbjct: 331 TPPKQRLIVKTFVREFSY--TVIR--KAILREILRGGQVYYIYNNVNKIERKKIELKKLV 386 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 N I I HG++ D ES+M+ F + +L+ +T+IE GID+ + + II Sbjct: 387 PEAN---------IRIGHGQLRSTDLESIMNDFYHKRFNVLVCSTIIETGIDIPNVNTII 437 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL---SKNSYTRLSVLKNTE---DGF 618 IENA +FGLAQLHQLRGRVGR + + LL P L ++ R+ + + E F Sbjct: 438 IENANNFGLAQLHQLRGRVGRSQHQAYAWLLV-PSLKDIKSDAKKRIDAITSIESFGSCF 496 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GEILG QSG Sbjct: 497 ELANRDLEIRGIGEILGNNQSG 518 >gi|291166313|gb|EFE28359.1| transcription-repair coupling factor [Filifactor alocis ATCC 35896] Length = 1124 Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 165/542 (30%), Positives = 270/542 (49%), Gaps = 39/542 (7%) Query: 115 NVFFEGRKITVTGKI------KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSV 168 N F+ RK + KI KK++N I + Y+ H + V IE G+ Sbjct: 456 NDIFQNRKKKQSRKIGKKYDSKKIENFIQLKKGDYVVHETYGVG-QFIEIEQREFDGIKK 514 Query: 169 DLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT-SPARER 227 D + KI L V E ++K +Q S +A+ + K +W S AR + Sbjct: 515 D-YIKIAYFGGDSLYVPLEQMDK--VQSFIGNSAEQAYKL----SKLGSSDWKKSKARTK 567 Query: 228 LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287 A + + + L +R+ E G + ++ P+ T Q AI+++ +D Sbjct: 568 KAVEAIAQDLVELYAVREN---EKGYSFQEDTVWQREFEDAFPYEETDDQLKAIEEVKRD 624 Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347 M M R+L GDVG GKT VA+ A+ A G Q V + P ILAQQHY IK+ N Sbjct: 625 MESSRVMDRLLCGDVGYGKTEVAIRAIFKACMDGKQVVFLVPTTILAQQHYVTIKERFLN 684 Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407 + V++++ + + +A G ++IGTH + + I+Y L L++VDE+ RFG Sbjct: 685 YPLRVDLVSRFKTTKEVNETFDSLAKGSVDVVIGTHKILSEKIKYKNLGLIVVDEEQRFG 744 Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-- 465 V+Q+ + + L ++ATPIPRTL L+ G ++S + E P R PI T + Sbjct: 745 VKQKEAIKKMRMNIDCLTLSATPIPRTLHLSLSGIREMSILNEPPQDRHPIVTYVTEAKS 804 Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHG 523 N I + I+R L+ G + +++ ++E +++ ++L + + IA+ HG Sbjct: 805 NIIADAIDR---ELARGGQVFFVYNRVE---------TIDKIHTLLKELVPDADIAVAHG 852 Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583 +M E +M F N +L+ TT+IE G+D+ +A+ +I+ +A+ GL+QL+QLRGRV Sbjct: 853 QMPSRKLEQIMVDFLNREYDVLVCTTIIETGMDISNANTMIVYDADKMGLSQLYQLRGRV 912 Query: 584 GRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQ 638 GR + +Y L++ + RL ++ TE GF +A +DL+ R G +LG Q Sbjct: 913 GRSSKQGYAYFMYEKEKVLTEIAEKRLKTIREFTEFGSGFKVAMKDLEIRGAGNLLGESQ 972 Query: 639 SG 640 SG Sbjct: 973 SG 974 >gi|118589910|ref|ZP_01547314.1| Mfd, transcription-repair coupling factor [Stappia aggregata IAM 12614] gi|118437407|gb|EAV44044.1| Mfd, transcription-repair coupling factor [Stappia aggregata IAM 12614] Length = 1161 Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 132/382 (34%), Positives = 210/382 (54%), Gaps = 25/382 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +AI + +D+S M R++ GDVG GKT VAL A A +G Q ++ P Sbjct: 613 PYEETDDQLTAIDAVFEDLSSGRPMDRLVCGDVGFGKTEVALRAAFIAAMSGRQVAVVVP 672 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QH++ + I V + +P + IA G I++GTHAL S Sbjct: 673 TTLLARQHFKTFSERFHGLPINVAHASRLVPTKQLNLTKKGIADGSVDIVVGTHALLGKS 732 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ L L+I+DE+ FGV+ + +L + + HVL ++ATPIPRTL L G ++S I Sbjct: 733 IEFRDLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLIA 792 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R ++T + P D ++ R + +L E G +++++CP++ + + ER Sbjct: 793 TPPVDRLAVRTFVSP---FDPLVVR-EALLREHYRGGQSFYVCPRLAD--------IAER 840 Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 L +A+ HG+M + E VM++F G +L++TT++E G+D+ A+ +I+ Sbjct: 841 LEFLENQVPELKVAVAHGQMPPGELEDVMNAFYEGKYNVLLSTTIVESGLDIPTANTLIV 900 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GF 618 A+ FGLAQL+QLRGRVGR + + L+ P L+ + RL VL++ E GF Sbjct: 901 HRADMFGLAQLYQLRGRVGRSK--TRAYALFTVPANKTLTATAERRLKVLQSLETLGAGF 958 Query: 619 LIAEEDLKQRKEGEILGIKQSG 640 +A DL R G +LG +QSG Sbjct: 959 QLASHDLDIRGAGNLLGEEQSG 980 >gi|32474124|ref|NP_867118.1| transcription-repair coupling factor [Rhodopirellula baltica SH 1] gi|32444661|emb|CAD74663.1| transcription-repair coupling factor [Rhodopirellula baltica SH 1] Length = 1181 Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 148/478 (30%), Positives = 254/478 (53%), Gaps = 30/478 (6%) Query: 210 HNPRKAK--DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267 + P+ AK WT+ + A +A + LL ++ + +GIP++ + + ++ Sbjct: 582 NRPKLAKIGGISWTNQKKAAEAAVTDMADE--LLELQAKRATRLGIPMSPDNEWQRQFDA 639 Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q SAI+ + DM M R++ GDVG GKT VA+ A AV +G Q ++ Sbjct: 640 SFPYLETPDQLSAIEALKIDMEAPRPMDRLICGDVGFGKTEVAMRAAFKAVSSGYQVAVL 699 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LA+QHY+ ++ + + ++ A +R+ ++ I G+A I+IGTH + Sbjct: 700 VPTTVLAEQHYQSFRERMAEFPVEIRKLSRFCTPAEQRETVKEIRRGKADIVIGTHRVAS 759 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++ L LV++DE+ RFGV + +L + + VL ++ATPIPRTL + +G DIS Sbjct: 760 KDVEFNNLGLVVIDEEQRFGVAVKERLKTQHSNVDVLTLSATPIPRTLHMALVGVRDISN 819 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKE--SNFRSV 503 + PA R ++T + R D+ + R +V L+ G + Y++ +I + + + +++ Sbjct: 820 LETPPAERMAVET---KVTRWDDKMLRSAIVRELNRGGQMYFVHNRIGDMDDLAARIKAI 876 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 V I I HG+M + E VM F + +L+ATT+IE G+D+ +A+ + Sbjct: 877 VPELR---------IGIGHGQMEEGALEQVMVDFIDHKFDMLLATTIIESGLDIPNANTM 927 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GF 618 I++ +GL+ LHQLRGRVGR + + C LL P L+ + RL ++ GF Sbjct: 928 FIDDGNRYGLSDLHQLRGRVGRYKHQAYCYLLVSPNKRLTPEASKRLRAIEEYSQMGAGF 987 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI---LTQDPDL 673 I+ DL+ R G +LG +QSG E++ LLE A + A+ + L+ D D+ Sbjct: 988 AISMRDLEIRGAGNLLGSQQSG--HIAAVGYEMYCQLLEDAVRQAQKLPPKLSADVDI 1043 >gi|110598535|ref|ZP_01386804.1| transcription-repair coupling factor [Chlorobium ferrooxidans DSM 13031] gi|110339839|gb|EAT58345.1| transcription-repair coupling factor [Chlorobium ferrooxidans DSM 13031] Length = 1108 Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 143/445 (32%), Positives = 237/445 (53%), Gaps = 24/445 (5%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 I L+ + Q K + G + ++ + F T Q AI ++ +DM + M R+ Sbjct: 502 INLIKIYAQRKMQSGFAFAADSIFMREFEASFIFEETPDQHRAIVEVKKDMEAPHPMDRL 561 Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 + GD G GKT +A+ A AVE+ Q ++ P ILA QH E + +N I + +++ Sbjct: 562 ICGDAGFGKTEIAMRAAFKAVESKKQVAVLTPTTILAHQHAESFTRRFENFPIAIAVLSR 621 Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417 +P+ + + L++I GQ I+IGTH L + + L L+++DE+ FGV+ + KL ++ Sbjct: 622 FVPRKDQIELLKKIKAGQIDIVIGTHRLVSKDVLFQDLGLLVIDEEQHFGVEVKEKLREQ 681 Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERL 475 L M+ATPIPRTL + LG D+S ++ P R+P++T+I + I I+R Sbjct: 682 FPGVDTLTMSATPIPRTLQFSMLGARDLSIVSTPPKNRQPVETLITDYDTALIQSAIQR- 740 Query: 476 KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 + EG + +++ +I E+ + R +V ++ I HG+M+ + E V Sbjct: 741 -EIRREG-QVFFLHNRISGLEEVQLTLRELVP---------SARIVFAHGQMAPKELEKV 789 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593 M F +LI+TT+I G+D+ +A+ III A+ FGL+ L+QLRGRVGR + + C Sbjct: 790 MMDFMQKEVDVLISTTIIGSGLDISNANTIIINRADMFGLSDLYQLRGRVGRSDRKAYCY 849 Query: 594 LLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGM---PKFL 645 L+ P L +++ RL+V+++ TE GF IA DL R G +LG +QSG F Sbjct: 850 LITPPLHTLKRDAVQRLAVIESFTELGSGFNIALRDLDIRGAGNLLGAEQSGYIHELGFD 909 Query: 646 IAQPELHDSLLEIARKDAKHILTQD 670 + Q L +++ E+ H+ D Sbjct: 910 LYQKMLEETVAELKSTTFSHLFLTD 934 >gi|229586940|ref|YP_002845441.1| Transcription-repair coupling factor [Rickettsia africae ESF-5] gi|228021990|gb|ACP53698.1| Transcription-repair coupling factor [Rickettsia africae ESF-5] Length = 1122 Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 144/439 (32%), Positives = 239/439 (54%), Gaps = 35/439 (7%) Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQ--KILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 +IAL L++ K+++ +VE + + K N PFS T+ Q AI DI +D+ M Sbjct: 541 EIALHLIQIAAKRKLNSSASVEFDLEEYDKFCANFPFSETEDQLIAINDIKEDLRNGMLM 600 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHY----EFIKKYTQ 346 R++ GDVG GKT VA+ A+ ++ Q ++ P IL QH+ E K + Sbjct: 601 DRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQHFSRFIERFKGFGL 660 Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 N + + +I+ + R + + G+ +IIIGTH+L +I+++ L L+I+DE+ F Sbjct: 661 NIKQLSSVISSKEAKIIRSE----LKSGKINIIIGTHSLLHKNIKFFNLKLLIIDEEQHF 716 Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466 GV Q+ L ++ HVL M+ATPIPRTL ++ G ++S I P R + T ++P Sbjct: 717 GVGQKEFLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVHTSVMP-- 774 Query: 467 RIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523 D VI R +L E G +++++ P+I++ + ++ + + IA +G Sbjct: 775 -CDPVIIR-DALLREHFRGGRSFYVVPRIKD-----IEDIAKQLKQIVPELSYKIA--YG 825 Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583 +M+ + VM F G +L++TT+IE GID+ +A+ +II NA+ GL+QL+QLRGR+ Sbjct: 826 KMTPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANTMIIHNADMLGLSQLYQLRGRI 885 Query: 584 GRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGIKQ 638 GRG+ L H ++ +S RL +++N+ GF IA D+ R G ++G +Q Sbjct: 886 GRGKMRGYAYLTVASHKKMTSHSLRRLEIIQNSCALGSGFTIASRDMDLRGFGNLIGEEQ 945 Query: 639 SGMPKFLIAQPELHDSLLE 657 SG K + EL+ +LE Sbjct: 946 SGQIKEV--GTELYQEMLE 962 >gi|325107412|ref|YP_004268480.1| transcription-repair coupling factor [Planctomyces brasiliensis DSM 5305] gi|324967680|gb|ADY58458.1| transcription-repair coupling factor [Planctomyces brasiliensis DSM 5305] Length = 1114 Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 143/439 (32%), Positives = 236/439 (53%), Gaps = 21/439 (4%) Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293 +A + L ++ KK I P + ++ + P+ T Q +AI I +DM ++ Sbjct: 537 MAADMIKLQATREAKKGIAYPGD--SHWYEEFEQAFPYEETPDQATAIDSIREDMMRERP 594 Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353 M R++ GDVG GKT VA+ A A+++G QA ++ P +LA+QHY +E Sbjct: 595 MDRLICGDVGYGKTEVAMRAAFRAIDSGKQAAVLVPTTVLAEQHYRSFCARMAEFPYNIE 654 Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413 +++ + ++ LE + G +++GTH + I++ L LVI+DE+ RFGV+ + Sbjct: 655 MLSRFRSKKEQKAILEGLEAGTIDLVVGTHRIVSPDIKFKDLGLVIIDEEQRFGVKAKEM 714 Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473 L + +L ++ATPIPRTL ++ LG DIS + P GR+ I+T I R D + Sbjct: 715 LKRLRLEVDILTLSATPIPRTLHMSLLGIRDISNLQTPPRGRQAIETRIC---RWDPELI 771 Query: 474 RLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531 R +V L+ + Y++ ++ + +E + E+ + + I+HG+MS+ + E Sbjct: 772 RHAIVRELNRNGQVYFVHNRVYDIEE-----LTEKLQQIVPE--AKFGIVHGQMSESELE 824 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 M +F G +L+ATT+IE G+D+ +A+ + I A+ +GLA +HQLRGRVGR + + Sbjct: 825 KQMVAFVRGKTDVLMATTIIESGLDIPNANTMFIHEADRYGLADMHQLRGRVGRFKHRAY 884 Query: 592 CILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646 C L+ LS S RL ++ + GF IA DL+ R G ILG +QSG + Sbjct: 885 CYLVVEEGKVLSTTSTRRLKAIEEYSELGAGFKIAMRDLEIRGAGNILGTEQSG--HISL 942 Query: 647 AQPELHDSLLEIARKDAKH 665 EL+ LLE A ++ K+ Sbjct: 943 VGYELYCQLLENAVREQKN 961 >gi|309799278|ref|ZP_07693526.1| transcription-repair coupling factor [Streptococcus infantis SK1302] gi|308117123|gb|EFO54551.1| transcription-repair coupling factor [Streptococcus infantis SK1302] Length = 538 Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 145/388 (37%), Positives = 217/388 (55%), Gaps = 27/388 (6%) Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347 M M R+L GDVG GKT VA+ A AV Q V++ P +LAQQHY K+ + Sbjct: 1 MQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLVPTTVLAQQHYSNFKERFEQ 60 Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407 + V++++ + + + LE++ GQ I+IGTH + +++ L L+I+DE+ RFG Sbjct: 61 FAVNVDVLSRFRSKKEQTETLEKLKKGQVDILIGTHRVLSKDVEFADLGLMIIDEEQRFG 120 Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467 V+ + L + VL +TATPIPRTL ++ LG D+S I P R P++T ++ N Sbjct: 121 VKHKEALKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEQN- 179 Query: 468 IDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIH 522 D VI VL E G + Y++ +++ EKK S + ++ +SI +H Sbjct: 180 -DRVIR--DAVLREMDRGGQVYYLYNKVDTIEKKVSELQELIPE---------ASIGFVH 227 Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582 G+MS+I E+ + F G +L+ TT+IE G+D+ +A+ + IENA+H GL+ L+QLRGR Sbjct: 228 GQMSEIRLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGLSTLYQLRGR 287 Query: 583 VGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIK 637 VGR I+ L+Y P L++ S RL +K TE GF IA DL R G +LG Sbjct: 288 VGRSNRIAYAYLMYRPDKTLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNLLGSS 347 Query: 638 QSGMPKFLIAQPELHDSLLE--IARKDA 663 QSG + EL+ LLE IA+K+ Sbjct: 348 QSGFIDSV--GFELYSQLLEEVIAKKNG 373 >gi|189485430|ref|YP_001956371.1| transcription-repair coupling factor Mfd [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287389|dbj|BAG13910.1| transcription-repair coupling factor Mfd [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 1048 Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 153/451 (33%), Positives = 233/451 (51%), Gaps = 36/451 (7%) Query: 259 GKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317 G +K L N P+ T Q AI+DI D + M R++ GDVG GKT V + A A Sbjct: 489 GTAWEKELENTFPYDETPGQLKAIEDIKNDFLKPYPMERLVCGDVGYGKTEVVVRAAFKA 548 Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377 V Q I+ P +LAQQHY I V +++ +A +++ + + +G Sbjct: 549 VHESMQTAILVPTTVLAQQHYNTFCDRLSPFPIKVAVLSRFQTKAKQKEITQDLENGLID 608 Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437 IIIGTH L Q +++ L L+++DE+HRFGV+Q+ K+ +L+++ATPIPRTL Sbjct: 609 IIIGTHRLLQKDVKFKNLGLLVIDEEHRFGVKQKEKIKSMKKNIDILMLSATPIPRTLSS 668 Query: 438 TSLGDIDISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495 + G D+S I P GR PI+T I N I +IE LS + +++ +IE Sbjct: 669 SLSGFRDLSVIETPPFGRLPIETSISLYDENLIKNIIE---AELSRNGQVFYVYNKIE-- 723 Query: 496 KESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554 +++ + S+ E + II+G+M D E +M F N +L+ATT+IE G Sbjct: 724 ------TILTKAASIRELVPGIKLGIIYGQMKAKDIEEIMWKFINMELDVLLATTIIESG 777 Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPPLSKNSYTRLSVLKN 613 +D+ + +IIE E+FGL+QL+QLRGR+GR + + C L Y LS + RL ++ Sbjct: 778 LDIPSVNTMIIEEVENFGLSQLYQLRGRIGRDRKKAYCYLFYKDKTLSDEAVKRLEAIRE 837 Query: 614 TED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK--HILT 668 + GF +A +DL+ R G IL Q G + + ++ LLE K K + + Sbjct: 838 FGELGSGFRLALKDLEIRGAGGILSSSQHGFVRDI--GYDMFAKLLEEEGKKVKGDAVES 895 Query: 669 QDP-----DL--------TSVRGQSIRILLY 686 Q+ DL T + G+ IRIL Y Sbjct: 896 QEKKNTVIDLQINALIPPTYIEGEDIRILFY 926 >gi|270293887|ref|ZP_06200089.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275354|gb|EFA21214.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 1129 Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 136/410 (33%), Positives = 219/410 (53%), Gaps = 19/410 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + Q ++E G + + + +++ + + T Q A D+ DM M R++ Sbjct: 531 LIKLYSQRREEKGFQYSSDSFLQRELEASFIYEDTPDQSKATSDVKADMESARPMDRLVC 590 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LA QH++ K+ + VE ++ Sbjct: 591 GDVGFGKTEVAVRAAFKAVADNKQVAVLVPTTVLAYQHFQTFKERLKGLPCRVEYLSRAR 650 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + ++ +A G+ +I+IGTH + +++ L L+I+DE+ +FGV + KL Q Sbjct: 651 TAVQAKAVVKGLAEGEVNILIGTHRILGKDVKFKDLGLLIIDEEQKFGVSVKEKLRQLKV 710 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478 L MTATPIPRTL + +G D+S I P R PI+T + N +E+I + + Sbjct: 711 NVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFN--EEIIADAVNFE 768 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537 +S + +++ +I E ++++ER H + I HG+M + E ++ F Sbjct: 769 MSRNGQVFFVNNRISNLVE--LKAMIER------HIPDCRVCIGHGQMEPAELEKIIFDF 820 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 N +L+ATT+IE GID+ +A+ III A++FGL+ LHQ+RGRVGR + + C LL Sbjct: 821 VNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-A 879 Query: 598 PPLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 PPLS + RL ++N D G IA +DL R G +LG +QSG Sbjct: 880 PPLSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 929 >gi|197105082|ref|YP_002130459.1| transcription-repair coupling factor [Phenylobacterium zucineum HLK1] gi|196478502|gb|ACG78030.1| transcription-repair coupling factor [Phenylobacterium zucineum HLK1] Length = 1162 Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 136/381 (35%), Positives = 211/381 (55%), Gaps = 23/381 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q AI D+L+D++ M R++ GDVG GKT VAL A +G Q ++AP Sbjct: 613 PYEETEDQLMAIGDVLEDLAGGKPMDRLVCGDVGFGKTEVALRAAFVVAMSGQQVAVVAP 672 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHY+ + + + V ++ + + E +A G+ I++GTHA+ Sbjct: 673 TTLLARQHYKTFTERFEGWPVKVRRLSRLVTAKEAAETREGLAKGEVEIVVGTHAILSKQ 732 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L LVIVDE+ FGV+ + KL + H+L +TATPIPRTL ++ G ++S I Sbjct: 733 VSFKNLGLVIVDEEQHFGVKHKEKLKELRADVHLLTLTATPIPRTLQMSLSGIREMSIIA 792 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R ++T I P + I E + R K G +AY++ P+I + E +ERF Sbjct: 793 TPPVDRLAVRTYITPWDPVVIREALLREKY---RGGQAYFVAPRINDLPE------LERF 843 Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 L E + HG+M+ E VM +F +G +L++TT++E G+D+ A+ +II Sbjct: 844 --LREQVPEVKFVVGHGQMAPTQLEEVMSAFYDGQYDVLLSTTIVESGLDIPTANTLIIH 901 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK----NSYTRLSVLKNTED---GFL 619 A+ FGLAQL+QLRGRVGR + + L P K ++ RL VL++ ++ GF Sbjct: 902 RADMFGLAQLYQLRGRVGRSKSRAYAYLTT--PAEKQITLSAEKRLKVLQSLDNLGAGFQ 959 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL R G +LG +QSG Sbjct: 960 LASHDLDIRGGGNLLGEEQSG 980 >gi|46202166|ref|ZP_00053648.2| COG1197: Transcription-repair coupling factor (superfamily II helicase) [Magnetospirillum magnetotacticum MS-1] Length = 1131 Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 150/436 (34%), Positives = 234/436 (53%), Gaps = 26/436 (5%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 I + RK + E +P EG + + PF+ T+ Q AI+D + D++ M R+ Sbjct: 554 IGIAAQRKMRQGEALVP--AEG-LYDEFCARFPFAETEDQLRAIEDSIADLASGKPMDRL 610 Query: 298 LQGDVGSGKTLVAL-IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 + GDVG GKT VA+ +A AA++ G Q ++ P +LA+QHY K+ + VE ++ Sbjct: 611 ICGDVGFGKTEVAMRVAFVAALQ-GLQVAVVVPTTLLARQHYRTFKERFAGLPVRVEQLS 669 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 + + +A G I++GTHAL I + +L L+I+DE+ FGV + +L Q Sbjct: 670 RLVTAKTASEVKAGVADGSVDIVVGTHALLAKGIGFKRLGLLIIDEEQHFGVAHKERLKQ 729 Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 HVL +TATPIPRTL + G ++S I P R ++T ++P D V+ R + Sbjct: 730 LKADVHVLTLTATPIPRTLQMALSGVKEMSVIATPPIDRLAVRTFVLP---YDPVVLR-E 785 Query: 477 VVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 +L E G + +++CP++ ++ V ER L +++A HGR++ D E V Sbjct: 786 SILRERYRGGQVFYVCPRL-----ADIDRVAERLAKLVPEVKTAVA--HGRLAPADLEEV 838 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE--ISS 591 M +F + +L++T +IE GID+ + +II A+ FGL QL+QLRGRVGRG+ + Sbjct: 839 MVAFGDKQYDVLLSTNIIESGIDMPSVNTLIIHRADMFGLGQLYQLRGRVGRGKTRGYAY 898 Query: 592 CILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648 L LSK + RL V++ + GF +A DL R G +LG +QSG + + Sbjct: 899 FTLPNDKVLSKAAEKRLQVMQALDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIREVGV- 957 Query: 649 PELHDSLLEIARKDAK 664 EL+ LLE A AK Sbjct: 958 -ELYQQLLEEAVAAAK 972 >gi|294625045|ref|ZP_06703694.1| transcription-repair coupling factor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600675|gb|EFF44763.1| transcription-repair coupling factor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 1154 Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 139/381 (36%), Positives = 206/381 (54%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q +AI L+D+ M R++ GDVG GKT VA+ A AA AG Q ++ Sbjct: 604 GFPFEETGDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVL 663 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LA+QHY + + + VE+++ + LE++A G +IIGTH L Q Sbjct: 664 VPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRLLQ 723 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++ L LV+VDE+ RFGV+Q+ L H+L +TATPIPRTL + G D+S Sbjct: 724 PDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSI 783 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R ++T I + + E +R LS G + Y++ +E S+V Sbjct: 784 IATPPPNRLAVQTFITAWDNTLLREAFQR---ELSRGGQLYFLHNDVE--------SIVR 832 Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 L E + I I HG+M + + E VM F+ +L++TT+IE GID+ +A+ II Sbjct: 833 MQRDLSELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTII 892 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619 I A+ FGLAQLHQLRGRVGR + L+ ++ ++ RL + + ++ GF Sbjct: 893 INRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEAIASMDELGAGFT 952 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG QSG Sbjct: 953 LATHDLEIRGAGELLGEDQSG 973 >gi|219684175|ref|ZP_03539119.1| transcription-repair coupling factor [Borrelia garinii PBr] gi|219672164|gb|EED29217.1| transcription-repair coupling factor [Borrelia garinii PBr] Length = 1124 Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 135/380 (35%), Positives = 211/380 (55%), Gaps = 21/380 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +AIK+I +DM M R+L GDVG GKT VA+ A AV Q ++++P Sbjct: 580 PYDETLDQITAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSP 639 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILA+QH+ KK +N + +E+++ + ++ L+ + G+ IIIGTH + Sbjct: 640 TTILAEQHFNTFKKRFKNFPVKIEVLSRFIKNNSEKRILKELKSGEIDIIIGTHKILSKK 699 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 L L+I+DE+ RFGV+++ KL + + L ++ATPIPR+L ++ + DIS + Sbjct: 700 FTCKNLGLIIIDEEQRFGVKEKEKLKEIRISVDCLSLSATPIPRSLHMSLIKLRDISVLK 759 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R I+ + + I IE LS + + + IEE + Sbjct: 760 IPPKNRVKIEAYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEE---------LHYL 807 Query: 508 NSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 +L E T + IAIIHG+++ + E++M +F ++L+ATT+IE GID+ +A+ III Sbjct: 808 KTLIEKLTPYARIAIIHGKLTGDEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIII 867 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLI 620 NA FGLAQL+QL+GRVGRG + + LY L+++S RL + D GF I Sbjct: 868 NNANKFGLAQLYQLKGRVGRGSKKAYAYFLYQDSEKLNESSIERLRAITEFSDLGAGFKI 927 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A +D++ R G +LG +Q G Sbjct: 928 AMKDMEIRGVGNLLGREQHG 947 >gi|239825634|ref|YP_002948258.1| transcription-repair coupling factor [Geobacillus sp. WCH70] gi|239805927|gb|ACS22992.1| transcription-repair coupling factor [Geobacillus sp. WCH70] Length = 1177 Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 133/378 (35%), Positives = 207/378 (54%), Gaps = 17/378 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q +I++I +DM M R+L GDVG GKT VAL A A+ G Q + P Sbjct: 621 PYQETEDQLRSIEEIKRDMESDKPMDRLLCGDVGYGKTEVALRAAFKAIMDGKQVAFLVP 680 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHYE +++ Q I V ++ + + + ++ + G ++IGTH L Sbjct: 681 TTILAQQHYETVRERFQGFPINVGLLNRFRTRKQQAETIKGLKDGTIDMVIGTHRLLSKD 740 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +Q+ L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ +G D+S I Sbjct: 741 VQFKDLGLLIIDEEQRFGVTHKEKIKQLKANIDVLTLTATPIPRTLHMSMIGVRDLSIIE 800 Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R P++T ++ I E IER L+ + +++ +IE + + E Sbjct: 801 TPPENRFPVQTYVMEYTPELIREAIER---ELARDGQVFFLYNRIE-----DIDAKAEEI 852 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + L + + HGRM++ + ES M +F G +L+ TT+IE G+D+ + + +I+ + Sbjct: 853 SQLVPE--ARVTYAHGRMTENELESTMLAFLEGQYDVLVTTTIIETGVDIPNVNTLIVYD 910 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622 A+ GL+QL+QLRGRVGR ++ Y L++++ RL +K TE GF IA Sbjct: 911 ADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLNEDAEKRLQAIKEFTELGSGFKIAM 970 Query: 623 EDLKQRKEGEILGIKQSG 640 DL R G ILG +Q G Sbjct: 971 RDLSIRGAGNILGAQQHG 988 >gi|325922308|ref|ZP_08184088.1| transcription-repair coupling factor Mfd [Xanthomonas gardneri ATCC 19865] gi|325547213|gb|EGD18287.1| transcription-repair coupling factor Mfd [Xanthomonas gardneri ATCC 19865] Length = 1156 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 139/381 (36%), Positives = 206/381 (54%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q +AI L+D+ M R++ GDVG GKT VA+ A AA AG Q ++ Sbjct: 606 GFPFEETPDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVL 665 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LA+QHY + + + VE+++ + LE++A G +IIGTH L Q Sbjct: 666 VPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRLLQ 725 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++ L LV+VDE+ RFGV+Q+ L H+L +TATPIPRTL + G D+S Sbjct: 726 PDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSI 785 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R ++T I + + E +R LS G + Y++ +E S+V Sbjct: 786 IATPPPNRLAVQTFITAWDNALLREAFQR---ELSRGGQLYFLHNDVE--------SIVR 834 Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 L E + I I HG+M + + E VM F+ +L++TT+IE GID+ +A+ II Sbjct: 835 MQRDLSELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTII 894 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619 I A+ FGLAQLHQLRGRVGR + L+ ++ ++ RL + + ++ GF Sbjct: 895 INRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSITADAEKRLEAIASMDELGAGFT 954 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG QSG Sbjct: 955 LATHDLEIRGAGELLGEDQSG 975 >gi|296283911|ref|ZP_06861909.1| transcription-repair coupling factor [Citromicrobium bathyomarinum JL354] Length = 1163 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 147/435 (33%), Positives = 230/435 (52%), Gaps = 28/435 (6%) Query: 237 QIALLLMRKQFKKEIGIPINVEGKIA--QKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 +IA LMR ++ + +E A + + P+ T+ QE AI D+L D+ M Sbjct: 569 EIASELMRTAAQRALKKAPVLEADHASYNQFVDRFPWEETEDQERAIADVLGDLESGKPM 628 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R++ GDVG GKT VAL A A G Q ++AP +LA+QH++ + + V Sbjct: 629 DRLVCGDVGFGKTEVALRAAFVAAMGGQQVAVVAPTTLLARQHFQHFSERFAGFPLKVGR 688 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 ++ + + + +A G I++GTHA+ S ++ L LVIVDE+ RFGV + KL Sbjct: 689 LSRLVSAKESSETRDALADGTMDIVVGTHAILSKSTKFKDLGLVIVDEEQRFGVTHKEKL 748 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 Q H+L +TATPIPRTL + G ++S I P R ++T +I D+++ R Sbjct: 749 KQLRADVHMLTLTATPIPRTLQMAMTGLRELSTIQTPPVDRLAVRTYVI---EWDDMVIR 805 Query: 475 LKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530 + +L E G +++ + P+I + + + LHEH + HG+MS + Sbjct: 806 -EALLREHHRGGQSFIVVPRISD--------MDPLLDWLHEHVPEVKVVPAHGQMSASEV 856 Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590 E M +F +L++TT++E G+D+ A+ III A+ FGLAQL+QLRGRVGR ++ Sbjct: 857 EDRMSAFYEKKYDVLLSTTIVESGLDISSANTIIIHRADRFGLAQLYQLRGRVGRA-KLR 915 Query: 591 SCILLYHP---PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK- 643 + L P LS+ + RL VL + + GF +A DL R G +LG +QSG + Sbjct: 916 AYAYLTTPADEALSEVAEKRLKVLSDLDSLGAGFQLASHDLDIRGAGNLLGDEQSGHIRE 975 Query: 644 --FLIAQPELHDSLL 656 F + Q L D++L Sbjct: 976 VGFELYQSMLEDAIL 990 >gi|190573435|ref|YP_001971280.1| putative transcription-repair coupling factor [Stenotrophomonas maltophilia K279a] gi|190011357|emb|CAQ44972.1| putative transcription-repair coupling factor [Stenotrophomonas maltophilia K279a] Length = 1154 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 155/476 (32%), Positives = 246/476 (51%), Gaps = 28/476 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W+ R+ +A ++ + R+Q + G+ + V+ + + PF T Q Sbjct: 557 QWSKAKRKAAEKVRDVAAELLEIQARRQARA--GLALQVDRAMYEPFAAGFPFEETPDQL 614 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI L+D++ M R++ GDVG GKT VA+ A AA AG Q ++ P +LA+QHY Sbjct: 615 AAIDATLRDLASSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVLVPTTLLAEQHY 674 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + VE+++ + LE++A G +I+GTH L Q +++ L +V Sbjct: 675 RNFRDRFADYPLKVEVLSRFKSTKEIKAELEKVAAGTIDVIVGTHRLLQPDVKFKDLGMV 734 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 IVDE+ RFGV+Q+ L H+L +TATPIPRTL + G D+S I P R + Sbjct: 735 IVDEEQRFGVRQKEALKALRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPPNRLAV 794 Query: 459 KTVIIPINRIDEVI--ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T I + D + E + L+ G + Y++ +E S+ L E Sbjct: 795 QTF---ITQWDNALLREAFQRELARGGQLYFLHNDVE--------SIGRMQRELSELVPE 843 Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + I I HG+M + + E VM F+ +L++TT+IE GID+ +A+ III A+ FGLAQ Sbjct: 844 ARIGIAHGQMPERELEKVMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRFGLAQ 903 Query: 576 LHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630 LHQLRGRVGR + L+ ++ ++ RL + + ++ GF +A DL+ R Sbjct: 904 LHQLRGRVGRSHHRAYAYLITPDRRAITPDAEKRLEAIASMDELGAGFTLATHDLEIRGA 963 Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS---VRGQSIRI 683 GE+LG QSG + L+ LLE A + K + PDL + VRG + + Sbjct: 964 GELLGEDQSG--QMAEVGFSLYTELLERAVRSIKQ--GKLPDLDAGEEVRGAEVEL 1015 >gi|21243585|ref|NP_643167.1| transcription-repair coupling factor [Xanthomonas axonopodis pv. citri str. 306] gi|21109155|gb|AAM37703.1| transcription-repair coupling factor [Xanthomonas axonopodis pv. citri str. 306] Length = 1154 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 139/381 (36%), Positives = 206/381 (54%), Gaps = 19/381 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 PF T Q +AI L+D+ M R++ GDVG GKT VA+ A AA AG Q ++ Sbjct: 604 GFPFEETGDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVL 663 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LA+QHY + + + VE+++ + LE++A G +IIGTH L Q Sbjct: 664 VPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRLLQ 723 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++ L LV+VDE+ RFGV+Q+ L H+L +TATPIPRTL + G D+S Sbjct: 724 PDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSI 783 Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 I P R ++T I + + E +R LS G + Y++ +E S+V Sbjct: 784 IATPPPNRLAVQTFITAWDNTLLREAFQR---ELSRGGQLYFLHNDVE--------SIVR 832 Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 L E + I I HG+M + + E VM F+ +L++TT+IE GID+ +A+ II Sbjct: 833 MQRDLSELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTII 892 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619 I A+ FGLAQLHQLRGRVGR + L+ ++ ++ RL + + ++ GF Sbjct: 893 INRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEAIASMDELGAGFT 952 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 +A DL+ R GE+LG QSG Sbjct: 953 LATHDLEIRGAGELLGEDQSG 973 >gi|239618514|ref|YP_002941836.1| transcription-repair coupling factor [Kosmotoga olearia TBF 19.5.1] gi|239507345|gb|ACR80832.1| transcription-repair coupling factor [Kosmotoga olearia TBF 19.5.1] Length = 1018 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 131/397 (32%), Positives = 216/397 (54%), Gaps = 20/397 (5%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G+ + + + R+ P T+ Q AI+++L D++ + M R++ GD G GKT VAL Sbjct: 456 GLSLKGDPTLEDAFKRSFPHLETEDQAKAIEEVLDDLADEKPMDRLVSGDAGYGKTEVAL 515 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A AV +G Q I+ P +LA+QHYE K + + V+I+ R+K L + Sbjct: 516 RAAFRAVVSGKQVSILVPTTVLARQHYETFKNRLEPFGVNVDILDRYRTPKERQKILREL 575 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 +G+ +IIGTH+L +++ L LVI+DE+ FGV Q+ L + +VL M+ATPI Sbjct: 576 KNGKIDVIIGTHSLLSKDVRFADLGLVIIDEEQLFGVMQKEHLKKLRLEVNVLTMSATPI 635 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWIC 489 PRTL + G ++S I P GR +T + P+N D +I R V+ ++ G + ++ Sbjct: 636 PRTLYMALSGLRELSMIATPPIGRTMPETYVGPVN--DRLI-RTAVLREINRGGQVIYVH 692 Query: 490 PQIEE--KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 ++ E K E+ R+++ I + HG+M E + F +G ++L+ Sbjct: 693 NRVNELNKLENKIRTLLPEV---------EIGVAHGQMPKRLFEKNVGDFYSGKLQMLLC 743 Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP----PLSKN 603 TT+IE G+D+ +A+ +I+++++ +GLAQL+QLRGRVGR + LY+P P +K Sbjct: 744 TTIIESGVDIPNANTLIVDDSQRYGLAQLYQLRGRVGRSTRRAFAYFLYNPKRLTPKAKE 803 Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640 L G +A +D++ R GE+LG +Q G Sbjct: 804 RLKALREFSGPGSGMKLAIKDMEIRGFGELLGKEQHG 840 >gi|253698851|ref|YP_003020040.1| transcription-repair coupling factor [Geobacter sp. M21] gi|251773701|gb|ACT16282.1| transcription-repair coupling factor [Geobacter sp. M21] Length = 1157 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 133/376 (35%), Positives = 207/376 (55%), Gaps = 15/376 (3%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q +AI ++ DM M R++ GDVG GKT VA+ A + G Q I+ P Sbjct: 618 FEETPDQAAAIDQVIADMESPRPMDRLVCGDVGYGKTEVAMRAAFKSTLDGKQVAILVPT 677 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LAQQH E ++ + VE+++ +++ LE + G+ I+IGTH L Q + Sbjct: 678 TVLAQQHAESFASRLKDYPVRVEMLSRFRTPQQQKQILEGVKKGEVDIVIGTHRLLQKDV 737 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + L L+IVDE+ RFGV + +L Q +L +TATPIPRTL ++ +G D+S I Sbjct: 738 VFKDLGLLIVDEEQRFGVAHKERLKQFRAVVDILTLTATPIPRTLYMSLMGIRDLSIIDT 797 Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P R IKT + DE+I E + L G + +++ +++ ++ E Sbjct: 798 PPVDRLAIKTFV--SRSSDELIREAVLRELRRGGQVFFVHNRVQ-----TIGAMAEELKR 850 Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 + + IA+ HG+M++ + E VM SF +G LL+ TT+IE G+D+ A+ +I+ A+ Sbjct: 851 IVPE--AKIAVGHGQMAEKELEQVMLSFMHGETNLLLCTTIIESGLDIPTANTLIVNRAD 908 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEED 624 FGL+QL+QLRGRVGR + + LL +S + RL +L+ + GF IA D Sbjct: 909 TFGLSQLYQLRGRVGRSKSRAYAYLLIPGEGAISPEARERLKILQELTELGAGFRIATHD 968 Query: 625 LKQRKEGEILGIKQSG 640 L+ R G++LG +QSG Sbjct: 969 LELRGAGDLLGARQSG 984 >gi|330994820|ref|ZP_08318742.1| Transcription-repair-coupling factor [Gluconacetobacter sp. SXCC-1] gi|329758081|gb|EGG74603.1| Transcription-repair-coupling factor [Gluconacetobacter sp. SXCC-1] Length = 1160 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 142/433 (32%), Positives = 225/433 (51%), Gaps = 33/433 (7%) Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317 E + + PF T+ Q AI D+L DM+ M R++ GDVG GKT VAL A A Sbjct: 592 EDGMWDEFCARFPFVETEDQSRAIADVLDDMASGKPMDRLVCGDVGFGKTEVALRAAFVA 651 Query: 318 VEAGGQAVIMAPIGILAQQHYE-FIKKYTQ---NTQIIVEIITGNMPQAHRRKALERIAH 373 +G Q ++ P +LA+QHY F ++ N + ++T A R+ +A Sbjct: 652 AMSGAQVAVVVPTTLLARQHYRTFSARFAGLPVNVAQLSRMVTPKEATAVRKG----LAD 707 Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433 G +I+IGTHAL ++++ L L+IVDE+ FGV + KL HVL ++ATP+PR Sbjct: 708 GTVNIVIGTHALLAKTVKFADLGLLIVDEEQHFGVAHKEKLKALREDVHVLTLSATPLPR 767 Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQ 491 TL L G ++S I P R ++T I+P + I E I+R + G + + + P+ Sbjct: 768 TLQLALTGVREMSLIATPPTDRLAVRTFIMPFDSVVIREAIQRERF---RGGQVFCVVPR 824 Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAII--HGRMSDIDKESVMDSFKNGTCKLLIATT 549 IE+ ++R + ++ HGR++ + E VM F +G +L++T Sbjct: 825 IED---------LDRMATRLSEIVPDARLVQAHGRLTPTELERVMTEFSDGKYDILLSTN 875 Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTR 607 ++E G+D+ + +II A+ FGL QL+QLRGRVGRG++ L + LS + R Sbjct: 876 IVESGLDMPAVNTLIIHRADMFGLGQLYQLRGRVGRGKQRGYAYLTWPQTHVLSAAAQKR 935 Query: 608 LSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFL---IAQPELHDSLLEIARK 661 L V++ + GF +A DL R G +LG +QSG + + + Q L D++ ++ + Sbjct: 936 LEVMQTLDTLGAGFTLASHDLDLRGAGNLLGDEQSGHIREVGIELYQQMLEDAVADLRTE 995 Query: 662 DAKHILTQDPDLT 674 + L QD D T Sbjct: 996 KGRRRL-QDRDWT 1007 >gi|118444361|ref|YP_877116.1| transcription-repair coupling factor [Clostridium novyi NT] gi|118134817|gb|ABK61861.1| transcription-repair coupling factor [Clostridium novyi NT] Length = 1170 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 141/431 (32%), Positives = 227/431 (52%), Gaps = 23/431 (5%) Query: 219 EWTSPARE-RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277 EWT ++ R A +E+ + L +R K G + ++ P+ T Q Sbjct: 573 EWTKAKKKVRKAINEIAEELVKLYAIRSTLK---GHKFGKDTVWQKQFEDEFPYDETPDQ 629 Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 +AI++I +DM M R+L GDVG GKT VA+ A +V G Q ++ P ILA+QH Sbjct: 630 LTAIQEIKEDMESSKAMDRLLCGDVGYGKTEVAIRAAFKSVMDGKQVALLVPTTILAEQH 689 Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 Y + K + + +++I+ A + L+ + G ++IGTH + Q +++ L L Sbjct: 690 YTNLVKRFCDFPVKIDMISRFKTSAQVKAILKEVKAGNVDVLIGTHRILQKDVEFKDLGL 749 Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457 +IVDE+ RFGV + K+ VL +TATPIPRTL ++ G DIS I P R P Sbjct: 750 LIVDEEQRFGVTHKEKIKNLKKNVDVLTLTATPIPRTLHMSLTGIRDISVIETPPEERYP 809 Query: 458 IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKE--SNFRSVVERFNSLHEHF 514 ++T ++ N D++I + + + G + Y++ ++ KE + +V Sbjct: 810 VQTYVVEFN--DQLILDAITREMDRGGQVYFVYNRVGSIKEMAAYLAKLVP--------- 858 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + + I HG+M + + E VM F +L+ TT+IE G+D+ +A+ +II +A+ FGL+ Sbjct: 859 DAKVGIAHGQMPERELEKVMFDFMKKEYDILVCTTIIETGLDIQNANTMIIYDADKFGLS 918 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 QL+QLRGRVGR ++ L Y L++ + RL +K+ TE GF IA DL+ R Sbjct: 919 QLYQLRGRVGRTNRMAYAYLTYKKDKVLTEVAEKRLKAIKDFTELGSGFKIAMRDLEIRG 978 Query: 630 EGEILGIKQSG 640 G ++G Q G Sbjct: 979 AGNLIGAAQHG 989 >gi|90416638|ref|ZP_01224568.1| transcription-repair coupling protein Mfd [marine gamma proteobacterium HTCC2207] gi|90331391|gb|EAS46627.1| transcription-repair coupling protein Mfd [marine gamma proteobacterium HTCC2207] Length = 1173 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 143/414 (34%), Positives = 214/414 (51%), Gaps = 21/414 (5%) Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 A ++ + R+ +K G N + +K PF T Q AI + +D+ M Sbjct: 589 AAELLDIYARRAARK--GFAFNDNEEDYRKFSGEFPFEETADQLEAIDAVRRDLLSPQPM 646 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R++ GDVG GKT VA+ A AV + Q VI+ P +LA QH + + N I VE Sbjct: 647 DRLVCGDVGFGKTEVAMRAAFTAVSSSKQVVILVPTTLLAHQHLQNFRDRFANWPIKVEE 706 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 ++ + + + G+ I+I TH L I + +L L+I+DE+HRFGV+Q+ K+ Sbjct: 707 LSRFRTSHEQDQVIADTESGKVDILISTHKLLHAKIDFERLGLLIIDEEHRFGVRQKDKI 766 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 ++ +L MTATPIPRTL L+ D+S I PA R +KT I R D V Sbjct: 767 KSMRSSVDILTMTATPIPRTLNLSMHAVRDLSIIATPPARRLSVKTFI--RQREDRVTR- 823 Query: 475 LKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531 + +L E G + Y++ ++ N + + L + I + HG+M + E Sbjct: 824 -EAILREILRGGQVYFLHNDVK-----NIQRTADELALLVPE--ARINVAHGQMRERQLE 875 Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591 VM F + +L+ TT+IE GID+ A+ I+IE A+ FGLAQLHQLRGRVGR + Sbjct: 876 QVMSDFYHQRFNVLVCTTIIETGIDIPSANTILIERADKFGLAQLHQLRGRVGRSHHQAY 935 Query: 592 CILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640 LL PP ++ ++ RL + + GF +A DL+ R GE+LG +QSG Sbjct: 936 AYLLTPPPKTMTSDALKRLEAISAADHLGSGFTLATNDLEIRGAGELLGEEQSG 989 >gi|256545180|ref|ZP_05472546.1| transcription-repair coupling factor - superfamily II helicase [Anaerococcus vaginalis ATCC 51170] gi|256399221|gb|EEU12832.1| transcription-repair coupling factor - superfamily II helicase [Anaerococcus vaginalis ATCC 51170] Length = 1164 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 130/377 (34%), Positives = 210/377 (55%), Gaps = 17/377 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T SQ +I +I DM M R+L GDVG GKT VAL A A+ G Q + P Sbjct: 619 YEETDSQVRSINEIKDDMENIKPMDRLLCGDVGYGKTEVALRAAFKAIMDGYQVCFLVPT 678 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 ILA QHY +K+ ++ + +++ + + + K ++ + G+ II+GTH L + I Sbjct: 679 TILASQHYSTMKERFKDYPVECALLSRFVSKKEQDKNIKNLKSGKIDIIVGTHRLLSNDI 738 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L L+I+DE+ RFGV+ + KL + VL ++ATPIPRTL L+ G D+S + E Sbjct: 739 KFKNLGLLIIDEEQRFGVRHKDKLKKLKENIDVLTLSATPIPRTLQLSLTGIRDMSTLDE 798 Query: 451 KPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P R P+ T ++ + +I+R ++ L + Y++ ++ ++ + +N Sbjct: 799 PPERRLPVNTYVLEYDS--SIIKRAIEKELDRDGQVYFVYNRV--------YNIEKIYNE 848 Query: 510 LHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 L E ++IAI HG+MS + E +M+ F NG +L+ATT+IE G+D+ + + II+ ++ Sbjct: 849 LVELIPDANIAIAHGQMSAKNLEKIMEDFVNGDIDILLATTIIETGMDIQNVNTIIVYDS 908 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEE 623 + GL+QL+QL+GR+GR S Y L++ RL +K+ D G+ IA Sbjct: 909 DMMGLSQLYQLKGRIGRSSRSSYAYFTYAKGKVLTEIGEKRLKSIKDFSDFGSGYKIAMR 968 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R G ILG QSG Sbjct: 969 DLELRGAGNILGESQSG 985 >gi|134095113|ref|YP_001100188.1| transcription-repair ATP-dependent coupling factor [Herminiimonas arsenicoxydans] gi|133739016|emb|CAL62064.1| Transcription-repair-coupling factor (TRCF) (ATP-dependent helicase Mfd) [Herminiimonas arsenicoxydans] Length = 1148 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 151/424 (35%), Positives = 222/424 (52%), Gaps = 21/424 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q +AI ++QDM+ M R++ GDVG GKT VAL A AV G Q I+AP Sbjct: 604 FEETVDQAAAINAVIQDMTSGKPMDRLICGDVGFGKTEVALRAAFIAVLGGKQVAILAPT 663 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA+QH + + + + ++ +A++ +A G I+IGTH L Sbjct: 664 TLLAEQHAQTFADRFADWPVRIAELSRFRSGKEITQAMKGMADGTIDIVIGTHKLLSADT 723 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G D S I Sbjct: 724 KFSRLGLVIIDEEHRFGVRQKETLKALRAEVDVLTLTATPIPRTLGMALEGLRDFSIIAT 783 Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R IKT + N I E R L G + Y++ ++E + N ++++E Sbjct: 784 APQKRLAIKTFVRSENASVIREACLR---ELKRGGQVYFLHNEVETIE--NRKAMLEELM 838 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 + I + HG++ + D E +M F +L+ TT+IE GIDV A+ II+ A Sbjct: 839 P-----EARIGVAHGQLHERDLERIMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRA 893 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623 + FGLAQLHQLRGRVGR + LL H LSK + RL ++ E+ GF +A Sbjct: 894 DKFGLAQLHQLRGRVGRSHHQAYAYLLVHDVQGLSKLAQRRLDAIQQMEELGSGFYLAMH 953 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683 DL+ R GE+LG QSG + Q L+ +L A + K+ ++PDL + + I Sbjct: 954 DLEIRGAGEVLGDNQSGEMTEIGFQ--LYSDMLNEAVRSLKN--GKEPDLAAPLATTTEI 1009 Query: 684 LLYL 687 L++ Sbjct: 1010 NLHV 1013 >gi|87311618|ref|ZP_01093735.1| transcription-repair coupling factor [Blastopirellula marina DSM 3645] gi|87285621|gb|EAQ77538.1| transcription-repair coupling factor [Blastopirellula marina DSM 3645] Length = 1077 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 156/499 (31%), Positives = 255/499 (51%), Gaps = 38/499 (7%) Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246 E ++K + KS P +A+ + +K A E+ +D LAG+ LL ++ Sbjct: 470 ELVQKYVGGSKSRPPLAKIGGVTWQKQKK--------AVEQAVHD--LAGE--LLEVQAM 517 Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306 + GI + + ++ + P+ T Q +AI +I DM Q M R+L GDVG GK Sbjct: 518 RRSRPGIAFSADTLWQREFDLSFPYEETTDQLTAIGNIKFDMEQPRPMDRLLCGDVGFGK 577 Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366 T VA+ AV+ G Q I+ P ILA+QHY+ +++ + ++ +R Sbjct: 578 TEVAMRGAFKAVDNGYQVAILVPTTILAEQHYKSLRERMAEFPFTIARLSRFASAKEQRD 637 Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426 ++ + G I++GTH L + + L LV++DE+ RFGV+ + +L Q T VL M Sbjct: 638 VVKGLKDGTIDIVVGTHRLASKDVSFQNLGLVVIDEEQRFGVEIKERLKQLRTTVDVLTM 697 Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKK 484 TATPIPRTL ++ +G DIS + P R ++T ++R + + R V+ LS G + Sbjct: 698 TATPIPRTLHMSLVGVRDISNLETPPLDRVAVET---KVSRWGDELIRHAVLRELSRGGQ 754 Query: 485 AYWICPQIEEKK--ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542 +++ ++++ + + + +V + I I HG+M + E VM F G Sbjct: 755 IFFVHNRVQDIELIAAKLQRIVPE---------AKIGIGHGQMGEGALEKVMTDFIAGKF 805 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---- 598 LL+ATT++E G+D+ +A+ I I+ A +GL++LHQLRGRVGR + + C +L P Sbjct: 806 DLLLATTIVESGLDIPNANTIFIDEANRYGLSELHQLRGRVGRYKHRAYCYMLLQPGRHL 865 Query: 599 -PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 P++ + + GF I+ DL+ R G ILG +QSG EL+ LLE Sbjct: 866 SPVAAKRLHAIEEFSHMGAGFAISMRDLEIRGAGNILGTQQSG--HIATVGYELYCQLLE 923 Query: 658 IARKDAKHI---LTQDPDL 673 A + K + +T D D+ Sbjct: 924 TAVRRMKRMPSKMTIDVDV 942 >gi|163786687|ref|ZP_02181135.1| transcription-repair coupling factor [Flavobacteriales bacterium ALC-1] gi|159878547|gb|EDP72603.1| transcription-repair coupling factor [Flavobacteriales bacterium ALC-1] Length = 1096 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 131/376 (34%), Positives = 209/376 (55%), Gaps = 13/376 (3%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T Q ++ DI DM + M R++ GDVG GKT VA+ A AV+ G Q ++ P Sbjct: 539 YEDTPDQITSTADIKADMESERPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPT 598 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 ILA QH K+ ++ + V+ + +R+ LE + G+ IIIGTH L ++ Sbjct: 599 TILAYQHSRTFKERLKDFPVTVDYVNRFRTAKEKRETLEGLEKGRVDIIIGTHQLANKNV 658 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L L+IVDE+ +FGV + KL VL +TATPIPRTL + + D+S IT Sbjct: 659 KFKDLGLLIVDEEQKFGVAVKEKLKTIKENVDVLTLTATPIPRTLQFSLMAARDLSVITT 718 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P R PI++ +I + + + + + G + ++I +IE KE +++R Sbjct: 719 APPNRYPIESHVIRFAE-ETIRDAVSYEIQRGGQVFFIHNRIENIKE--VAGMIQRLVP- 774 Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 + I I HG++ E +M SF NG +L++TT++E G+DV +A+ I I NA + Sbjct: 775 ----DAKIGIGHGQLDGKKLEHLMLSFMNGEFDVLVSTTIVESGLDVPNANTIFINNANN 830 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDL 625 FGL+ LHQ+RGRVGR + + C + + ++ ++ R++ L+ TE GF IA +DL Sbjct: 831 FGLSDLHQMRGRVGRSNKKAFCYFITPEYSAMTTDARKRITALEQFTELGSGFNIAMKDL 890 Query: 626 KQRKEGEILGIKQSGM 641 + R G++LG +QSG Sbjct: 891 EIRGAGDLLGGEQSGF 906 >gi|329954432|ref|ZP_08295523.1| transcription-repair coupling factor [Bacteroides clarus YIT 12056] gi|328527400|gb|EGF54397.1| transcription-repair coupling factor [Bacteroides clarus YIT 12056] Length = 1157 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 134/408 (32%), Positives = 217/408 (53%), Gaps = 15/408 (3%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + Q ++E G + + + +++ + + T Q A D+ DM M R++ Sbjct: 560 LIKLYSQRREEKGFQYSPDSFLQRELEASFIYEDTPDQSKATADVKADMESARPMDRLVC 619 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LA QH++ K+ + VE ++ Sbjct: 620 GDVGFGKTEVAVRAAFKAVADNKQVAVLVPTTVLAYQHFQTFKERLKGLPCRVEYLSRAR 679 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A + ++ +A G+ +I+IGTH + +++ L L+I+DE+ +FGV + KL Q Sbjct: 680 TAAQAKAVVKGLADGEVNILIGTHRILGKDVKFKDLGLLIIDEEQKFGVSVKEKLRQLKV 739 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 L MTATPIPRTL + +G D+S I P R PI+T + + D + + + + Sbjct: 740 NVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFSD-DIITDAINFEM 798 Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 S + +++ +I E ++++ER + I HG+M + E ++ F N Sbjct: 799 SRNGQVFFVNNRISNLSE--LKAMIERNIP-----DCRVCIGHGQMEPAELEKIILDFVN 851 Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 +L+ATT+IE GID+ +A+ III A++FGL+ LHQ+RGRVGR + + C LL PP Sbjct: 852 YDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-APP 910 Query: 600 LSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 LS + RL ++N D G IA +DL R G +LG +QSG Sbjct: 911 LSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 958 >gi|300774874|ref|ZP_07084737.1| transcription-repair coupling factor [Chryseobacterium gleum ATCC 35910] gi|300506689|gb|EFK37824.1| transcription-repair coupling factor [Chryseobacterium gleum ATCC 35910] Length = 1122 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 135/413 (32%), Positives = 216/413 (52%), Gaps = 17/413 (4%) Query: 237 QIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 QIA L++ Q K G + + ++ + + T QE A D+ +DM M Sbjct: 521 QIAFDLIKLYAQRKTAKGFAYTPDSYLQNELEASFIYEDTPDQEKATIDVKRDMEADTVM 580 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R++ GDVG GKT VA+ A A G Q ++ P ILA QHY K+ ++ + V Sbjct: 581 DRLVCGDVGFGKTEVAIRAAFKAATDGKQVAVLVPTTILAFQHYRSFKERLKDFPVNVAY 640 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 + + + LE + +G+ IIIGTH L S+++ L L+I+DE+H+FGV + KL Sbjct: 641 VNRFRTAKQKSETLEALKNGKVDIIIGTHQLVSSSVKFKDLGLLIIDEEHKFGVSVKDKL 700 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 L +TATPIPRTL + + D+S I P R+P++T +I N + + + Sbjct: 701 KTLKNNVDTLTLTATPIPRTLQFSLMAARDLSVIKTPPPNRQPVETQLIGFNE-ETLRDA 759 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534 + L + Y+I +IE K + +++R + + HG+M E + Sbjct: 760 VSYELQRDGQVYFINNRIENLK--DIAGLIQRLVP-----DARVITGHGQMEGKQLEKNV 812 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F G +L++TT++E G+DV +A+ I I +A+ FG+A LHQ+RGRVGR + C L Sbjct: 813 LDFMEGKYDVLVSTTIVESGVDVPNANTIFINDAQRFGMADLHQMRGRVGRSNRKAFCYL 872 Query: 595 LYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 + PP ++ ++ RL ++ D GF IA +DL+ R G++LG +QSG Sbjct: 873 I-TPPYDMMTSDARKRLEAIEQFSDLGSGFQIAMKDLEIRGAGDLLGAEQSGF 924 >gi|293603936|ref|ZP_06686351.1| transcription-repair coupling factor [Achromobacter piechaudii ATCC 43553] gi|292817773|gb|EFF76839.1| transcription-repair coupling factor [Achromobacter piechaudii ATCC 43553] Length = 1160 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 144/408 (35%), Positives = 208/408 (50%), Gaps = 17/408 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q G N+ Q F T Q +AI+ ++ DM+ M R++ Sbjct: 586 LLALYAQRAAREGFAFNLPLNDYQAFAEGFGFEETVDQAAAIEAVIADMTSGRPMDRLVC 645 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VAL A AV G Q ++ P +LA+QH + + + V ++ Sbjct: 646 GDVGFGKTEVALRAAFLAVANGKQVALLCPTTLLAEQHAQTFSDRFADWPVRVVELSRFR 705 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A+E I G+ I+IGTH + +++ +L LVI+DE+HRFGV+Q+ L Sbjct: 706 SAKEVAAAVEGINDGRVDIVIGTHKILSKDVKFKRLGLVIIDEEHRFGVRQKEALKALRA 765 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV- 478 VL +TATPIPRTL ++ G D S I P R IKT + R D R ++ Sbjct: 766 EVDVLTLTATPIPRTLGMSLEGIRDFSVIATAPQKRLAIKTF---VRREDGSTLREALLR 822 Query: 479 -LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537 L G + Y++ ++E N R+ +E + IA+ HG+M + + E VM F Sbjct: 823 ELKRGGQCYFLHNEVETIH--NRRARLEELVP-----EARIAVAHGQMPERELEQVMKGF 875 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY- 596 +L+ TT+IE GIDV A+ I+I A+ FGLAQLHQLRGRVGR + LL Sbjct: 876 YQQRYNVLLCTTIIETGIDVPSANTIVIHRADRFGLAQLHQLRGRVGRSHHQAYAYLLTP 935 Query: 597 -HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 ++ N+ RL ++ E+ GF +A DL+ R GE+LG QSG Sbjct: 936 GEDAITNNAKKRLEAIQAMEELGSGFYLAMHDLEIRGTGEVLGDSQSG 983 >gi|260219542|emb|CBA26387.1| Transcription-repair-coupling factor [Curvibacter putative symbiont of Hydra magnipapillata] Length = 1159 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 147/413 (35%), Positives = 218/413 (52%), Gaps = 23/413 (5%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q++AI ++QDM M R++ GDVG GKT VAL A AV G Q +AP Sbjct: 607 FEETADQKAAIHCVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFIAVTGGKQVAFLAPT 666 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA+QH++ + + + ++ AL+ +A G I++GTH L +S Sbjct: 667 TLLAEQHFQTLVDRFSKWPVKIAEMSRFRSAKEITAALKGVADGTVDIVVGTHKLLSEST 726 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 Q+ L L+I+DE+HRFGV+ + ++ VL +TATPIPRTL + G D+S I Sbjct: 727 QFKNLGLLIIDEEHRFGVRHKEQMKALRAEVDVLTLTATPIPRTLGMALEGLRDLSVIAT 786 Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R IKT + I E + R L G + Y++ ++E ++ R Sbjct: 787 APQRRLAIKTFVRTEGNGVIREAVLR---ELKRGGQVYFLHNEVE--------TIENRRQ 835 Query: 509 SLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 L E + IA+ HG+M + E+VM F LL+ +T+IE GIDV A+ I++ Sbjct: 836 KLEELLPEARIAVAHGQMPERQLEAVMRDFVAQRYNLLLCSTIIETGIDVPSANTIVMSR 895 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAE 622 A+ FGLAQLHQLRGRVGR + L+ L+K++ RL ++ E+ GF +A Sbjct: 896 ADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDIEGLTKHAQQRLDAIQQMEELGSGFYLAM 955 Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 DL+ R GE+LG QSG L +L++ +L A + K+ Q+PDL S Sbjct: 956 HDLEIRGAGEVLGENQSG--NMLEVGFQLYNEMLSEAVRCLKN--GQEPDLLS 1004 >gi|240169894|ref|ZP_04748553.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium kansasii ATCC 12478] Length = 1238 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 125/377 (33%), Positives = 208/377 (55%), Gaps = 17/377 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F+ T Q +AI+++ DM + M R++ GDVG GKT +A+ A AV+ G Q ++ P Sbjct: 657 FTETVDQLTAIQEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 716 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA QH + + + V+ ++ A R ++ +A G I+IGTH L Q + Sbjct: 717 TLLADQHLQTFAQRMSGFPVTVKGLSRFTDAAESRTVIDGLADGSVDIVIGTHRLLQTGV 776 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L LV+VDE+ RFGV+ + + T VL M+ATPIPRTL ++ G ++S I Sbjct: 777 RWKDLGLVVVDEEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 836 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508 P R P+ T + P + +V L+ L +A+++ ++ ++ ++ R +V Sbjct: 837 PPEERYPVLTYVGPHDD-KQVAAALRRELLRDGQAFYVHNRVSSIDRAAAHVRELVPE-- 893 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 + + + HG+M + E + F N +L+ TT++E G+D+ +A+ +I+E A Sbjct: 894 -------ARVVVAHGQMPEELLERTVQGFWNREYDILVCTTIVETGLDISNANTLIVERA 946 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623 + FGL+QLHQLRGRVGR E LY P PL++ +Y RL+ + + G +A + Sbjct: 947 DTFGLSQLHQLRGRVGRSRERGYAYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALK 1006 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R G +LG++QSG Sbjct: 1007 DLEIRGAGNVLGVEQSG 1023 >gi|327399449|ref|YP_004340318.1| transcription-repair coupling factor [Hippea maritima DSM 10411] gi|327182078|gb|AEA34259.1| transcription-repair coupling factor [Hippea maritima DSM 10411] Length = 1032 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 146/406 (35%), Positives = 227/406 (55%), Gaps = 21/406 (5%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T Q AI D+ DMS+ M R++ GDV GKT VA A+A AV QAV M P Sbjct: 502 YDETPDQLKAISDVKDDMSKDVPMDRLICGDVSFGKTEVAARAIAIAVFNLKQAVFMVPT 561 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA QH++ +K ++ + ++++T ++ R + L+ + G+ I+I THA++ + Sbjct: 562 TVLALQHFKNLKDRFKSFPVEIQLLTRFSTKSERERILKGLKQGRIDILITTHAVYSKDV 621 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L LV++DE+HRFGV+ + L K +L ++ATPIPRTL ++ G +DIS I Sbjct: 622 EFADLGLVVIDEEHRFGVKVKEHLKSKYPHADMLYLSATPIPRTLNMSLNGILDISVIKT 681 Query: 451 KPAGRKPIKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIE--EKKESNFRSVVER 506 P RKPI+T+I R +I L+ + EG + Y++ IE +K +S +++ Sbjct: 682 PPLERKPIETII--AKRKSSIIRDAILRELSREG-RVYFVHNSIETMDKVKSELDNLLP- 737 Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 + I+H +M +SV + F NG +LI+T++IE G+D+ III+ Sbjct: 738 --------FAKKGIVHAKMPKNQIKSVFERFNNGEFDILISTSIIESGLDIKSVDTIIID 789 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK---NTEDGFLIAEE 623 +A+ FGL+ LHQLRGRVGRG+ ++ LLY LS+N+ RL + G +A + Sbjct: 790 DADRFGLSDLHQLRGRVGRGDRVAYAYLLYRGKLSENATKRLEYMSEFIERGSGLNLALK 849 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669 D++ R G ILG QSG K + L SL+E A K+ K TQ Sbjct: 850 DMEIRGYGNILGKDQSGKIKSVGFSTYL--SLIEEAIKELKSQPTQ 893 >gi|170744353|ref|YP_001773008.1| transcription-repair coupling factor [Methylobacterium sp. 4-46] gi|168198627|gb|ACA20574.1| transcription-repair coupling factor [Methylobacterium sp. 4-46] Length = 1203 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 143/413 (34%), Positives = 219/413 (53%), Gaps = 23/413 (5%) Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313 P G+ A + P+ T+ QE+AI L D++ M R++ GDVG GKT VAL A Sbjct: 639 PDGTYGEFAARF----PYEETEDQEAAIAATLGDLTAGRPMDRLICGDVGFGKTEVALRA 694 Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373 A +G Q ++ P +LA+QHY + + + V + + A ++ E +A Sbjct: 695 AFVAAISGRQVAVVVPTTLLARQHYRTFAERFKGLPVNVAQASRFVSSAELKRVREGLAD 754 Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433 G I++GTHAL +I + L L+I+DE+ FGV + +L HVL ++ATPIPR Sbjct: 755 GTVDIVVGTHALLAKTIGFRDLGLIIIDEEQHFGVAHKERLKALRAEVHVLTLSATPIPR 814 Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493 TL L G ++S I P R ++T + P + + V E L G +A+++ P+IE Sbjct: 815 TLQLAMTGVRELSIIATPPVDRLAVRTFVTPFDPL-LVREALLRERYRGGQAFYVVPRIE 873 Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 E V+RF E + + I HG+M E VM +F G +L++TT++E Sbjct: 874 HLDE------VKRFLD-REMPEAKVGIAHGQMPAGQLEDVMTAFYEGKFDILLSTTIVES 926 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP----LSKNSYTRLS 609 G+D+ A+ +I+ A+ FGLAQL+QLRGRVGR + + L+ P L+ + RL Sbjct: 927 GLDIPTANTLIVHRADMFGLAQLYQLRGRVGRSK--ARAYALFTTPEGKALTVQAERRLK 984 Query: 610 VLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 VL++ + GF +A DL R G +LG +QSG K + EL+ +LE A Sbjct: 985 VLQSLDTLGAGFQLASHDLDIRGAGNLLGDEQSGHIKEV--GYELYQQMLEDA 1035 >gi|332524809|ref|ZP_08401002.1| transcription-repair coupling factor [Rubrivivax benzoatilyticus JA2] gi|332108111|gb|EGJ09335.1| transcription-repair coupling factor [Rubrivivax benzoatilyticus JA2] Length = 1145 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 148/424 (34%), Positives = 219/424 (51%), Gaps = 23/424 (5%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q +AI ++QD+ M R++ GDVG GKT VAL A +V G Q ++AP Sbjct: 597 FEETPDQRAAIHAVIQDLVSPRPMDRLVCGDVGFGKTEVALRAAFVSVIGGKQVALLAPT 656 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA+QHY+ + + + ++ + ALE +A G I++GTH L + Sbjct: 657 TLLAEQHYQTLVDRFGKWPVKIAELSRFRSAKEVKAALEGLADGTVDIVVGTHKLLSQDV 716 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 +Y +L L+I+DE+HRFGV+ + + VL +TATPIPRTL + G D+S I Sbjct: 717 RYKRLGLLIIDEEHRFGVRHKEAIKAMRAEVDVLTLTATPIPRTLGMALEGLRDLSVIAT 776 Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R IKT + N I E + R L G + Y++ +E S+ R Sbjct: 777 APQRRLAIKTFVRSENNSTIREAVLR---ELKRGGQVYFLHNDVE--------SIQARRQ 825 Query: 509 SLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 L E + I + HG+M + + E VM F +L+ +T+IE GIDV A+ I+I Sbjct: 826 KLEELLPEARIGVAHGQMPERELEHVMRDFVAQRHNILLCSTIIETGIDVPTANTIVISR 885 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAE 622 A+ FGLAQLHQLRGRVGR + LL L+K + RL ++ E+ GF +A Sbjct: 886 ADKFGLAQLHQLRGRVGRSHHQAYAYLLVPDVEALTKQAAQRLEAIQQMEELGSGFYLAM 945 Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682 DL+ R GE+LG QSG + +L++ +L A + K ++PDL S + Sbjct: 946 HDLEIRGAGEVLGENQSG--NMMEVGFQLYNDMLSEAVRSLK--AGKEPDLLSPLSATTE 1001 Query: 683 ILLY 686 I L+ Sbjct: 1002 INLH 1005 >gi|154483284|ref|ZP_02025732.1| hypothetical protein EUBVEN_00985 [Eubacterium ventriosum ATCC 27560] gi|149735794|gb|EDM51680.1| hypothetical protein EUBVEN_00985 [Eubacterium ventriosum ATCC 27560] Length = 1168 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 129/374 (34%), Positives = 214/374 (57%), Gaps = 17/374 (4%) Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333 T Q +AI ++ +DM M R++ GDVG GKT VA+ A AV+ Q + P +L Sbjct: 625 TDDQLNAISEVKKDMESTKIMDRLICGDVGFGKTEVAIRAAFKAVQDDKQVAYLVPTTVL 684 Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 AQQHY+ K+ ++ + VE+++ +++ K ++ + G ++IGTH + +++ Sbjct: 685 AQQHYKTFKQRFKDFPVRVEMLSRFRTKSNIDKTIKDLNKGYVDVVIGTHRMLSKDVKFK 744 Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453 L L+I+DE+ RFGV+ + ++ + V+ +TATPIPRTL ++ +G D+ + E P Sbjct: 745 DLGLLIIDEEQRFGVKHKEQIKELKNNVDVMTLTATPIPRTLHMSLIGIRDMCVMEEPPQ 804 Query: 454 GRKPIKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511 R PI+T ++ N E I R + L+ G + Y++ ++++ E + + +L Sbjct: 805 ERMPIQTFVMEYN---EEIARDAINRELARGGQVYYVYNRVQDIAE-----MAGKVQALV 856 Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571 +S+A HG+MS+ E +M F NG +L+ TT+IE G+D+ +A+ III +AE Sbjct: 857 PD--ASVAFAHGQMSERQLEEIMYDFVNGDIDVLVTTTIIETGLDIPNANTIIIHDAEKM 914 Query: 572 GLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLK 626 GL+QL+QLRGRVGR S L+Y + L++ + RL +++ TE G IA DL+ Sbjct: 915 GLSQLYQLRGRVGRSNRTSYAFLMYSRNKMLTEVAEKRLGAIRDFTELGSGVKIAMRDLE 974 Query: 627 QRKEGEILGIKQSG 640 R G +LG QSG Sbjct: 975 IRGTGNLLGAAQSG 988 >gi|113867469|ref|YP_725958.1| transcription-repair coupling factor [Ralstonia eutropha H16] gi|113526245|emb|CAJ92590.1| Transcription-repair coupling factor [Ralstonia eutropha H16] Length = 1149 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 146/431 (33%), Positives = 223/431 (51%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W R+ A ++ L R+ ++ P++ K + + F T Q Sbjct: 556 QWDKAKRKAAQQIRDTAAELLNLYARRAAREGFAFPLSP--KDYETFAESFGFEETPDQA 613 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q ++AP +LA+QH+ Sbjct: 614 AAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVLGGKQVAMLAPTTLLAEQHF 673 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + + ++ + A+ +I G I+IGTH + D +++ +L LV Sbjct: 674 QTLSDRFAEWPVRIVELSRFKTKKEIDAAIRQINEGTVDIVIGTHKILSDQVRFERLGLV 733 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 I+DE+HRFGV+Q+ L VL +TATPIPRTL + G D S I P R I Sbjct: 734 IIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 793 Query: 459 KTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 KT + R ++ + R ++ L G + Y++ ++E E K + +V Sbjct: 794 KTF---VRREEDGVIREAILRELKRGGQVYFLHNEVETIENKRARLAELVPE-------- 842 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + IA+ HG+M + + E VM F +L+ TT+IE GIDV A+ I+I ++ FGLA Sbjct: 843 -ARIAVAHGQMHERELERVMRDFVARRDNILLCTTIIETGIDVPTANTILIHRSDKFGLA 901 Query: 575 QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629 QLHQLRGRVGR + LL H L+K + RL ++ E+ GF +A DL+ R Sbjct: 902 QLHQLRGRVGRSHHQAYAYLLVHDVEGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRG 961 Query: 630 EGEILGIKQSG 640 GE+LG KQSG Sbjct: 962 AGEVLGDKQSG 972 >gi|84516196|ref|ZP_01003556.1| transcription-repair coupling factor [Loktanella vestfoldensis SKA53] gi|84509892|gb|EAQ06349.1| transcription-repair coupling factor [Loktanella vestfoldensis SKA53] Length = 1148 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 143/395 (36%), Positives = 214/395 (54%), Gaps = 27/395 (6%) Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317 E + + L P++ T Q SAI D+L D+ M R++ GDVG GKT VA+ A A Sbjct: 581 ESGLWDQFLARFPYAETDDQLSAIDDVLSDLGSGQPMDRLICGDVGFGKTEVAIRAAFVA 640 Query: 318 VEAGGQAVIMAPIGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALER--I 371 AG Q I+AP +LA+QHY E + + N + + ++ R AL R I Sbjct: 641 AMAGVQVAIVAPTTLLARQHYQSFAERFRGFPVNVRPLSRFVS------PRDAALTRDGI 694 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 A G I+IGTHAL ++ + L L+I+DE+ +FGVQ + +L Q T HVL +TATPI Sbjct: 695 AKGTVDIVIGTHALLAKAVNFKNLGLLIIDEEQKFGVQHKERLKQLRTDVHVLTLTATPI 754 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491 PRTL L+ G D+S I P R I+T + + I V E L G +++ + P+ Sbjct: 755 PRTLQLSLSGVRDLSVIGTPPIDRLAIRTYVSEFDTI-TVREALLREHYRGGQSFIVVPR 813 Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAI-IHGRMSDIDKESVMDSFKNGTCKLLIATTV 550 I + E +E F L E I G+M+ + + M++F +G +L+ATT+ Sbjct: 814 ITDMDE------MEAF--LREEVPEVTFISATGQMAAGELDDRMNAFYDGKYDVLLATTI 865 Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRL 608 +E G+D+ A+ +I+ A+ FGL+QL+Q+RGRVGR + + L P L+ + RL Sbjct: 866 VESGLDIPTANTMIVWRADMFGLSQLYQIRGRVGRSKTRAYAYLTTKPRQKLTTTAQKRL 925 Query: 609 SVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 VL + + GF +A +DL R G +LG +QSG Sbjct: 926 RVLGSIDSLGAGFTLASQDLDIRGAGNLLGEEQSG 960 >gi|33863047|ref|NP_894607.1| transcriptional-repair coupling factor [Prochlorococcus marinus str. MIT 9313] gi|33634964|emb|CAE20950.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str. MIT 9313] Length = 1193 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 131/400 (32%), Positives = 215/400 (53%), Gaps = 18/400 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ PT Q A+ D+ +DM M R++ GDVG GKT VA+ A+ A+ +G Q ++ Sbjct: 618 SFPYEPTPDQVKAVVDVKRDMEAAQPMDRLVCGDVGFGKTEVAIRAIFKAITSGRQIAML 677 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 AP +LAQQH+ + I V ++ + R+ L + G ++GTH L Sbjct: 678 APTTVLAQQHWRTLSDRFAPYPIKVALLNRFRTSSERKSILNGLKEGTIDAVVGTHQLLS 737 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + + KL L++VDE+ RFGV Q+ K+ VL ++ATPIPRTL ++ G ++S Sbjct: 738 KNTTFQKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPRTLYMSLSGVREMSL 797 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 IT P R+PIKT + + + V ++ L G + +++ P++E V + Sbjct: 798 ITTPPPLRRPIKTHLAAFDE-EAVRSSIRQELDRGGQVFYVVPRVE-----GIEDVARQL 851 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 + + + HG+M++ + ES M +F G L++ TT++E G+D+ + I+IE+ Sbjct: 852 QQMLPDL--KLLVAHGQMAEGELESSMVAFNAGEADLMLCTTIVESGLDIPRVNTILIED 909 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLK---NTEDGFLIA 621 A FGLAQL+QLRGRVGR + + L++P LS + RL ++ G+ +A Sbjct: 910 AHKFGLAQLYQLRGRVGR-SGVQAHAWLFYPGDASLSDTARQRLRAIQEFAQLGSGYQLA 968 Query: 622 EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEI 658 D++ R G +LG++QSG + F + L +SL EI Sbjct: 969 MRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEI 1008 >gi|313608166|gb|EFR84210.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL F2-208] Length = 277 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 110/266 (41%), Positives = 174/266 (65%), Gaps = 5/266 (1%) Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482 VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T + +D VI ++ + +G Sbjct: 2 VLFMTATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKG 61 Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNG 540 + Y ICP IEE ++ + ++ ++ FN L + + ++HG++ DKE +M F + Sbjct: 62 HQVYIICPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNDK 121 Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600 L++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ P Sbjct: 122 KIDCLVSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK- 180 Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIA 659 ++ R+ ++ T DGF+++E DL+ R G+ G KQSG+P+F +A +HD LLEIA Sbjct: 181 TEVGKERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRLLEIA 239 Query: 660 RKDAKHILTQDPDLTSVRGQSIRILL 685 R+DA H++ ++ L + + + LL Sbjct: 240 RQDAVHMIFEEDMLENKNYEKLVALL 265 >gi|317120949|ref|YP_004100952.1| transcription-repair coupling factor [Thermaerobacter marianensis DSM 12885] gi|315590929|gb|ADU50225.1| transcription-repair coupling factor [Thermaerobacter marianensis DSM 12885] Length = 1219 Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 148/460 (32%), Positives = 237/460 (51%), Gaps = 25/460 (5%) Query: 210 HNPRKAK--DFEWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266 H PR AK EW R + + EL +AL R+ + G + ++ Sbjct: 576 HQPRLAKLGSGEWNKVKQRVKESVRELAGELLALYAARQTLR---GHAFGPDTPWQRQFE 632 Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326 P+ T Q AI I DM + M R+L GDVG GKT VA+ A AV+ G Q + Sbjct: 633 DAFPYQETPDQLEAIAAIKADMERPVPMDRLLVGDVGFGKTEVAMRAAFKAVQDGKQVAV 692 Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386 + P +LA QH K+ + + ++ A + + L +A G I+IGTH L Sbjct: 693 LVPTTVLAYQHERTFKERFAPFPVTIRTLSRFASPAEQAEILTGLAQGTIDIVIGTHRLV 752 Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446 Q +++ L L+I+DE+HRFGV + +L Q VL ++ATPIPRTL + G D+S Sbjct: 753 QPDVRFKDLGLLIIDEEHRFGVAHKERLKQLKQNVDVLTLSATPIPRTLHMALAGIRDLS 812 Query: 447 KITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504 +I P R P++T ++ + + + I+R L G + +++ +++ + ++V Sbjct: 813 RIDTPPENRFPVQTFVVEWHESLVRDAIQR---ELRRGGQVFYVHNRVQ-----SIQAVR 864 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 R L + A+ HG+M + + E VM F G +L+ TT+IE G+D+ + + +I Sbjct: 865 RRLERLVPE--ARFAVAHGQMGEGELERVMVDFMAGKADVLVCTTIIESGLDMPNVNTLI 922 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFL 619 +E+A+ FGLAQL+QLRGRVGR + ++ Y L++++ RL +K+ + GF Sbjct: 923 VEDADRFGLAQLYQLRGRVGRSDRVAYAYFTYRRDKVLTEDAQKRLQAIKDFTELGAGFK 982 Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 +A DL+ R G +LG +Q G L +L+ LLE A Sbjct: 983 LALRDLEIRGAGNLLGAEQHGF--MLSVGFDLYAQLLEEA 1020 >gi|296535472|ref|ZP_06897661.1| transcription-repair coupling factor [Roseomonas cervicalis ATCC 49957] gi|296264193|gb|EFH10629.1| transcription-repair coupling factor [Roseomonas cervicalis ATCC 49957] Length = 1174 Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 150/459 (32%), Positives = 239/459 (52%), Gaps = 31/459 (6%) Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272 RKAK A++R+A +AGQ+ + ++ K + + EG + R PF+ Sbjct: 575 RKAK-------AKQRIAD---MAGQLIRIAAERRVK-DAPLVTPPEGAWDEFCAR-FPFA 622 Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332 T+ Q+ AI D+L+D++ M R++ GDVG GKT +AL A +G Q ++ P + Sbjct: 623 ETEDQQRAIADVLEDLAAGRPMDRLICGDVGFGKTEIALRAAFVVAMSGAQVAVVVPTTL 682 Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392 L++QH+ + I V ++ + + +A G +I++GTHAL +++ Sbjct: 683 LSRQHFRTFSARFEGLPIKVAQLSRMVTAKEAAQVKAGLADGSINIVVGTHALLAKGVEF 742 Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452 L LVIVDE+ FGV + +L HVL +TATPIPRTL L G ++S I P Sbjct: 743 ADLGLVIVDEEQHFGVAHKERLKSLKADVHVLTLTATPIPRTLQLALTGVREMSVIATPP 802 Query: 453 AGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 R ++T I+P + I E ++R + G + + + P++E + +V R + Sbjct: 803 VDRLAVRTFIMPFDAVVIREALQRERF---RGGQVFCVVPRLE-----DLPKMVTRLADI 854 Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 + + HGR++ + E VM F +G +L+AT ++E G+D+ + +II A+ Sbjct: 855 VPE--ARVVQAHGRLTPTELERVMTEFGDGKFDILLATNIVESGLDMPAVNTLIIYRADM 912 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDL 625 FGLAQL+QLRGRVGRG++ L + LS + RL+V L N GF +A DL Sbjct: 913 FGLAQLYQLRGRVGRGKQRGYAYLTWPATQRLSPAAEKRLAVMQTLDNLGAGFTLASHDL 972 Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 R G +LG +QSG + + EL+ +LE A D K Sbjct: 973 DIRGAGNLLGDEQSGHIREVGI--ELYQQMLEEAVADIK 1009 >gi|285018831|ref|YP_003376542.1| transcription-repair coupling factor protein [Xanthomonas albilineans GPE PC73] gi|283474049|emb|CBA16550.1| probable transcription-repair coupling factor protein [Xanthomonas albilineans] Length = 1166 Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 138/410 (33%), Positives = 221/410 (53%), Gaps = 21/410 (5%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL ++ + + G+ + V+ + + PF T Q +AI+ L+D++ M R++ Sbjct: 588 LLEIQARRQARAGLALQVDRAMYEPFAAGFPFEETPDQLAAIEATLRDLASSQPMDRVVC 647 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AA AG Q ++ P +LA+QHY + + + VE+++ Sbjct: 648 GDVGFGKTEVAVRAAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPLKVEVLSRFK 707 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + LE++A G +I+GTH L Q +++ L LVIVDE+ RFGV+Q+ L Sbjct: 708 STKEIKAELEKVAAGTIDVIVGTHRLLQADVRFKDLGLVIVDEEQRFGVRQKEALKALRA 767 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI--ERLKV 477 H+L +TATPIPRTL + G D+S I P R ++T + + D + E + Sbjct: 768 NVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPLNRLAVQTF---VTQWDNALLREAFQR 824 Query: 478 VLSEGKKAYWICPQIEE--KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535 L+ G + Y++ +E + + +V + I I HG+M + + E+VM Sbjct: 825 ELARGGQLYFLHNDVESIGRMQRELSVLVPE---------ARIGIAHGQMPERELETVML 875 Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595 F+ +L++TT+IE GID+ +A+ I+I A+ FGLAQLHQLRGRVGR + LL Sbjct: 876 DFQKQRFNVLLSTTIIESGIDIPNANTIVINRADRFGLAQLHQLRGRVGRSHHRAYAYLL 935 Query: 596 Y--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 ++ ++ RL + + ++ GF +A DL+ R GE+LG QSG Sbjct: 936 VPDQRSITADAQKRLDAIASMDELGAGFTLATHDLEIRGAGELLGEDQSG 985 >gi|219685734|ref|ZP_03540546.1| transcription-repair coupling factor [Borrelia garinii Far04] gi|219672729|gb|EED29756.1| transcription-repair coupling factor [Borrelia garinii Far04] Length = 1124 Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 135/380 (35%), Positives = 210/380 (55%), Gaps = 21/380 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q +AIK+I +DM M R+L GDVG GKT VA+ A AV Q ++++P Sbjct: 580 PYDETLDQITAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSP 639 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILA+QH+ KK +N + +E+++ + ++ L+ + G+ IIIGTH + Sbjct: 640 TTILAEQHFNTFKKRFKNFPVKIEVLSRFIKNNSEKRILKELKSGEIDIIIGTHKILSKK 699 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 L L+I+DE+ RFGV+++ KL + + L ++ATPIPR+L ++ + DIS + Sbjct: 700 FTCKNLGLIIIDEEQRFGVKEKEKLKEIRISVDCLSLSATPIPRSLHMSLIKLRDISVLK 759 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R I+ + + I IE LS + + + IEE + Sbjct: 760 IPPKNRVKIEAYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEE---------LHYL 807 Query: 508 NSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 +L E T + IAIIHG+++ + E++M +F ++L+ATT+IE GID+ +A+ III Sbjct: 808 KTLIEKLTPYARIAIIHGKLTGDEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIII 867 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLI 620 NA FGLAQL+QL+GRVGRG + + LY L++ S RL + D GF I Sbjct: 868 NNANKFGLAQLYQLKGRVGRGSKKAYAYFLYQDSEKLNERSIERLRAITEFSDLGAGFKI 927 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A +D++ R G +LG +Q G Sbjct: 928 AMKDMEIRGVGNLLGREQHG 947 >gi|294054382|ref|YP_003548040.1| transcription-repair coupling factor [Coraliomargarita akajimensis DSM 45221] gi|293613715|gb|ADE53870.1| transcription-repair coupling factor [Coraliomargarita akajimensis DSM 45221] Length = 1133 Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 128/377 (33%), Positives = 200/377 (53%), Gaps = 13/377 (3%) Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328 PF T Q AI QDM + M R++ GDVG GKT VA+ A AV AG Q ++ Sbjct: 573 FPFKETPDQLRAIDATKQDMEKAESMDRLICGDVGFGKTEVAIRAALKAVLAGKQVALLV 632 Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 P +L QQH+ K+ +I+++++ ++ + A G+ I+IGTH L Sbjct: 633 PTTVLCQQHFNTFKERMARYPVIIDMVSRFRTARQNKEIIANTAEGKIDIVIGTHRLLSK 692 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 + + L L+IVDE+ RFGV+Q+ + + +L ++ATPIPRTL L G +S I Sbjct: 693 DVHFNDLGLLIVDEEQRFGVKQKEAIKKLRADVDILTLSATPIPRTLYLAMAGARAMSVI 752 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R+PI+TV+ + + ++ G + +++ ++ V + Sbjct: 753 ETPPVDRRPIQTVVRSYDPA-LIKSAIQAETDRGGQVFYLHNRV-----GTIEGVANQIR 806 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 +H ++A+ HG+M++ E +M F G +L+ TT+IE GID+ + + +IIE A Sbjct: 807 EMHPKL--NVAVGHGQMTEGALEKIMTKFVAGEFDVLVCTTIIESGIDIPNCNTLIIEGA 864 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623 + FGLAQL+Q+RGRVGR ++ + LL H L + RL+ LK GF IA Sbjct: 865 DRFGLAQLYQIRGRVGRFKQQAYAYLLLHRHAALVDQAQKRLNALKQHNQLGAGFRIAMR 924 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R G +LG +QSG Sbjct: 925 DLELRGAGNLLGSQQSG 941 >gi|319779214|ref|YP_004130127.1| Transcription-repair coupling factor [Taylorella equigenitalis MCE9] gi|317109238|gb|ADU91984.1| Transcription-repair coupling factor [Taylorella equigenitalis MCE9] Length = 1158 Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 147/413 (35%), Positives = 222/413 (53%), Gaps = 31/413 (7%) Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298 AL MR+ +K IP+ + ++ F T Q+ AI +L+DM+ M R++ Sbjct: 582 ALRAMREGYK--FKIPLEDYHQFSE----GFDFEETPDQQQAIDSVLEDMASDKPMDRLV 635 Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQ---NTQIIVEI 354 GDVG GKT VAL A AV Q VI+ P +LA+QH + FI ++ N ++ Sbjct: 636 CGDVGFGKTEVALRAAFIAVANNKQVVILCPTTLLAEQHAQTFIDRFADWPINVALLSRF 695 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 TG + + + G I+IGTH + + +++ L L+I+DE+HRFGV+Q+ L Sbjct: 696 RTGK----ELNETINGCSDGNVDIVIGTHKVLSNKVKFKSLGLIIIDEEHRFGVRQKEAL 751 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 +L +TATPIPRTL ++ G D+S I P R IKT + R D+ R Sbjct: 752 KALRAEVDILTLTATPIPRTLSMSLEGIRDLSIIATAPQKRLAIKTFV---RREDKSTIR 808 Query: 475 LKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532 V+ L G + Y++ +++ N ++++E L E + I + HG+MS+ + E+ Sbjct: 809 EAVLRELKRGGQLYFLHNEVDTIH--NRKAMLEEL--LPE---ARIGVAHGQMSERELEA 861 Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592 VM F + LL+ TT+IE GIDV A+ III A+ GLAQLHQLRGRVGR + Sbjct: 862 VMKDFYHQRINLLLCTTIIETGIDVPTANTIIINRADKLGLAQLHQLRGRVGRSHHQAYA 921 Query: 593 ILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 LL +++ + RL ++ E+ GF +A DL+ R GE+LG +QSG Sbjct: 922 YLLTPGDEAITRQAKMRLEAIQAMEELGAGFYLAMHDLEIRGTGEVLGEQQSG 974 >gi|238927163|ref|ZP_04658923.1| transcription-repair coupling factor [Selenomonas flueggei ATCC 43531] gi|238884945|gb|EEQ48583.1| transcription-repair coupling factor [Selenomonas flueggei ATCC 43531] Length = 1097 Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 137/383 (35%), Positives = 210/383 (54%), Gaps = 26/383 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q AI +I DM + M R+L GDVG GKT VA+ A A G Q ++ P Sbjct: 549 PYQETDDQLRAIAEIKNDMESEKPMDRLLCGDVGFGKTEVAIRAAYKAAMDGYQVAVLVP 608 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF-QD 388 +LAQQHY+ + V+++ + + L +A G+ I+IGTHA+ + Sbjct: 609 TTVLAQQHYQTFAARFADFAPKVDVVCRFRTLREQAETLRDVARGRVDILIGTHAILNRK 668 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 ++++KL L+IVDE+ RFGV Q+ ++ + A VL ++ATPIPRTL ++ G D+S I Sbjct: 669 RVRFHKLGLLIVDEEQRFGVTQKERIKEFAAGVDVLTLSATPIPRTLHMSLAGARDMSVI 728 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIE-RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 PA R P+++ ++ + D V+ ++ LS G + Y+I + VE Sbjct: 729 ETPPAERLPVQSYVVESS--DAVMRGAIERELSRGGQIYFIYNR------------VESI 774 Query: 508 NSLHEHF-----TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562 + + EH + IA HG+MS+ E VM F G +L+AT++IE GIDV +A+ Sbjct: 775 DRMREHLLQLVPQARIASAHGQMSEDILEQVMMDFYEGHYDILLATSIIENGIDVANANT 834 Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DG 617 III +A+ FGL+QL+Q+RGRVGR +++ Y LS+ + RL ++ G Sbjct: 835 IIIYDADRFGLSQLYQMRGRVGRSAKMAFAYFTYRRDKVLSEMAEKRLQAMREFARLGSG 894 Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640 F IA DL+ R G +LG +Q G Sbjct: 895 FKIAMRDLEIRGAGSLLGAQQHG 917 >gi|254453067|ref|ZP_05066504.1| transcription-repair coupling factor [Octadecabacter antarcticus 238] gi|198267473|gb|EDY91743.1| transcription-repair coupling factor [Octadecabacter antarcticus 238] Length = 1154 Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 141/403 (34%), Positives = 224/403 (55%), Gaps = 21/403 (5%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 ++ L P++ T Q AI+D+L ++ M R++ GDVG GKT VA+ A A +G Sbjct: 593 EQFLARFPYAETDDQLRAIEDVLDNLGSGKPMDRLVCGDVGFGKTEVAIRAAFVAAMSGV 652 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q I+AP +LA+QHY+ + + I V ++ + + +A G I+IGT Sbjct: 653 QVAIVAPTTLLARQHYKGFAERFRGFPINVRTLSRFVSAKEAALTKDGMAKGTVDIVIGT 712 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 HAL +I++ L L+++DE+ FGVQ + +L Q T HVL +TATPIPRTL L+ G Sbjct: 713 HALLAKNIRFKDLGLLVIDEEQHFGVQHKERLKQMRTDIHVLTLTATPIPRTLQLSLSGV 772 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499 ++S I P R I+T ++ D V R + +L E G +++++ P+I + E Sbjct: 773 RELSIIGTPPVDRLAIRTY---VSEFDTVTIR-EALLREHYRGGQSFFVVPRISDLPE-- 826 Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559 +E F E S I G+M+ + + M++F +G +L+ATT++E G+D+ Sbjct: 827 ----IEAFIR-DEVPEVSFVIASGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPT 881 Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED- 616 A+ +I+ A+ FGLAQL+Q+RGRVGR + + L Y P L+ + RL VL + + Sbjct: 882 ANTMIVHRADMFGLAQLYQIRGRVGRSKARAYAYLTYKPRQKLTPQAEKRLRVLGSIDTL 941 Query: 617 --GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657 GF +A +DL R G +LG +QSG + + EL+ S+LE Sbjct: 942 GAGFTLASQDLDIRGAGNLLGEEQSGQMREV--GYELYQSMLE 982 >gi|197116614|ref|YP_002137041.1| transcription-repair coupling factor [Geobacter bemidjiensis Bem] gi|197085974|gb|ACH37245.1| transcription-repair coupling factor [Geobacter bemidjiensis Bem] Length = 1157 Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 133/376 (35%), Positives = 206/376 (54%), Gaps = 15/376 (3%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q AI ++ DM M R++ GDVG GKT VA+ A + G Q I+ P Sbjct: 618 FEETPDQAQAIDQVIADMESPRPMDRLVCGDVGYGKTEVAMRAAFKSTLDGKQVAILVPT 677 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LAQQH E ++ + VE+++ +++ LE + G+ I+IGTH L Q + Sbjct: 678 TVLAQQHAESFASRLKDYPVRVEMLSRFRTPQQQKQILEGVKKGEVDIVIGTHRLLQKDV 737 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + L L+IVDE+ RFGV + +L Q +L +TATPIPRTL ++ +G D+S I Sbjct: 738 VFKDLGLLIVDEEQRFGVAHKERLKQFRAVVDILTLTATPIPRTLYMSLMGIRDLSIIDT 797 Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P R IKT + DE+I E + L G + +++ +++ ++ E Sbjct: 798 PPVDRLAIKTFV--SRSSDELIREAVLRELRRGGQVFFVHNRVQ-----TIGAMAEELKR 850 Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 + + IA+ HG+M++ + E VM SF +G LL+ TT+IE G+D+ A+ +I+ A+ Sbjct: 851 IVPE--AKIAVGHGQMAEKELEQVMLSFMHGETNLLLCTTIIESGLDIPTANTLIVNRAD 908 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEED 624 FGL+QL+QLRGRVGR + + LL +S + RL +L+ + GF IA D Sbjct: 909 TFGLSQLYQLRGRVGRSKSRAYAYLLIPGEGAISPEARERLKILQELTELGAGFRIATHD 968 Query: 625 LKQRKEGEILGIKQSG 640 L+ R G++LG +QSG Sbjct: 969 LELRGAGDLLGARQSG 984 >gi|119386518|ref|YP_917573.1| transcription-repair coupling factor [Paracoccus denitrificans PD1222] gi|119377113|gb|ABL71877.1| transcription-repair coupling factor [Paracoccus denitrificans PD1222] Length = 1154 Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 130/379 (34%), Positives = 211/379 (55%), Gaps = 19/379 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P++ T+ Q SAI D+ +D++ M R++ GDVG GKT VA+ A A G Q ++AP Sbjct: 601 PYAETEDQASAIADVAEDLAAGRPMDRLVVGDVGFGKTEVAMRAAFIAASQGRQVAVVAP 660 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QH+ + + T I V ++ + + + +A G I++GTHA+ Sbjct: 661 TTLLARQHFRTFAERFRGTAINVRPLSRFVSAKDATETRKGLAEGTVDIVVGTHAVLSKQ 720 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +++ L L+IVDE+ FGV + +L + + HVL +TATPIPRTL L+ G D+S I Sbjct: 721 VRFKNLGLLIVDEEQHFGVAHKERLKELRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIG 780 Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R I+T + + I E + R K G +++++ P++ + E VE + Sbjct: 781 TPPVDRLSIRTYVSEFDGVTIREALLREKY---RGGQSFFVVPRLADLPE------VEEW 831 Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 L EH S + HG+++ D + M++F + +L+ATT++E G+D+ A+ +++ Sbjct: 832 --LREHVPEVSTIVAHGQLAAGDLDRRMNAFYDRGADVLLATTIVESGLDIPTANTMVVW 889 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIA 621 A+ FGLAQL+Q+RGRVGR + + C L P PL+ + RL L + GF +A Sbjct: 890 RADMFGLAQLYQIRGRVGRSKTRAYCYLTTKPRVPLTPQAMRRLKFLGAIDSLGAGFNLA 949 Query: 622 EEDLKQRKEGEILGIKQSG 640 +DL R G +LG +QSG Sbjct: 950 SQDLDLRGAGNLLGEEQSG 968 >gi|313148344|ref|ZP_07810537.1| transcription-repair coupling factor [Bacteroides fragilis 3_1_12] gi|313137111|gb|EFR54471.1| transcription-repair coupling factor [Bacteroides fragilis 3_1_12] Length = 1128 Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 137/409 (33%), Positives = 219/409 (53%), Gaps = 17/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + Q ++E G + + + +++ + + T Q A D+ QDM + M R++ Sbjct: 529 LIKLYSQRREEKGFAYSPDSFLQRELEASFIYEDTPDQSKATADVKQDMERDMPMDRLVC 588 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LA QH++ + + VE ++ Sbjct: 589 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRDRLKGLPCRVEYLSRAR 648 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A + ++ + G +I+IGTH + +++ L L+I+DE+ +FGV + KL Q Sbjct: 649 TAAQAKAVIKGLETGDVNILIGTHRILGKDVKFKDLGLLIIDEEQKFGVSVKEKLRQMKV 708 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478 L MTATPIPRTL + +G D+S I+ P R PI+T + + +EVI + + Sbjct: 709 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFS--EEVIADAINFE 766 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 +S + + + +I E ++++ L IAI HG+M ++ E ++ F Sbjct: 767 MSRNGQVFLVNNRIANLPE--LKAMI-----LRRIPDCRIAIGHGQMEPVELEQIIFGFV 819 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 N +LIATT+IE GID+ +A+ III A++FGL+ LHQ+RGRVGR + + C LL P Sbjct: 820 NYDYDVLIATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-AP 878 Query: 599 PLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 PLS + RL ++N D G IA +DL R G +LG +QSG Sbjct: 879 PLSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 927 >gi|90424109|ref|YP_532479.1| transcription-repair coupling factor [Rhodopseudomonas palustris BisB18] gi|90106123|gb|ABD88160.1| transcription-repair coupling factor [Rhodopseudomonas palustris BisB18] Length = 1172 Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 143/412 (34%), Positives = 222/412 (53%), Gaps = 23/412 (5%) Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316 V+ + + P+ T+ Q AI+ L D+ M R++ GDVG GKT VAL A A Sbjct: 607 VQPHLYDEFCARFPYDETEDQLGAIQASLHDLESGKPMDRLVCGDVGFGKTEVALRATFA 666 Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376 G Q ++ P +LA+QH + + + V + +P K + IA G Sbjct: 667 VAMEGKQVAVVVPTTLLARQHARNFTERFRGFPVNVGQASRLVPPKELAKVKKGIAEGAI 726 Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436 I++GTHAL SI++ L L++VDE+ FGV + +L Q HVL ++ATPIPRTL Sbjct: 727 DIVVGTHALLGKSIKFRDLGLIVVDEEQHFGVSHKERLKQLRAEVHVLTLSATPIPRTLQ 786 Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEE 494 L G D+S I P R ++T + P + I E + R + G +A+++CP+IE+ Sbjct: 787 LALTGVRDLSIIASPPVDRLAVRTFVAPHDPLMIREALLRERY---RGGQAFYVCPRIED 843 Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 + V+ F L +H +A+ HG+M E +M +F +G +L++TT++E Sbjct: 844 L------AGVKDF--LDKHVPEMKVAVAHGQMPPTVIEDIMSAFYDGKYDILLSTTIVES 895 Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSV 610 G+D+ +A+ +I+ A+ FGLAQL+QLRGRVGR ++ + L P ++ + RL V Sbjct: 896 GLDIPNANTLIVHRADMFGLAQLYQLRGRVGR-SKLRAYALFTLPSQHQITAQAERRLKV 954 Query: 611 LKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 L++ E GF +A DL R G +LG +QSG K + EL+ S+LE A Sbjct: 955 LQSLETLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGF--ELYQSMLEEA 1004 >gi|315122360|ref|YP_004062849.1| transcription-repair coupling factor [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495762|gb|ADR52361.1| transcription-repair coupling factor [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 1185 Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 138/396 (34%), Positives = 218/396 (55%), Gaps = 23/396 (5%) Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314 + V + + ++ P T+ QE A+ ++QD + + M R++ GDVG GKT +AL A Sbjct: 607 LTVSQDLYSQFVKKFPHVETEDQEKAVDAVIQDFTSGHLMDRLICGDVGFGKTEIALRAA 666 Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQ--AHRRKALERI 371 AV G Q ++AP +L +QH+ + Q+ + IV + P+ A +KA I Sbjct: 667 FIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQDFPVRIVSVSRFVKPKEVALHKKA---I 723 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 A GQ I+IGTHAL I + L L+IVDE+ FGV+ + L + T HVL ++ATPI Sbjct: 724 AEGQVDIVIGTHALLDPKITFSNLGLIIVDEEQHFGVKHKEALKETHTGVHVLTLSATPI 783 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491 PRTL L G ++S I+ P R +T I + + + E L G +++++CP+ Sbjct: 784 PRTLQLAITGVRELSLISMPPINRIACRTSISIFDPL-LIRETLMREYYRGGQSFYVCPR 842 Query: 492 IEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550 + + + ++ L +A+ HG+MS + E M+ F +L++T++ Sbjct: 843 LLDLDKC--------YDFLQSEVPELKVAMAHGQMSPKNLEETMNGFYERKYDILLSTSI 894 Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTR 607 +E G+D+ +A+ III+ A+ FGLAQL+QLRGRVGR +ISS L P PL+ ++ R Sbjct: 895 VESGLDLPNANTIIIQRADMFGLAQLYQLRGRVGRS-KISSFALFLLPENKPLTSSAQKR 953 Query: 608 LSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 L +L++ GF +A DL R G +LG +QSG Sbjct: 954 LRILQSLNTLGAGFQLASHDLDIRGTGNLLGEEQSG 989 >gi|166711350|ref|ZP_02242557.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzicola BLS256] Length = 1154 Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 147/430 (34%), Positives = 228/430 (53%), Gaps = 21/430 (4%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +WT R+ A D++ LL ++ + + G+ + V+ + + PF T Q Sbjct: 557 QWTKAKRK--AADKVRDVAAELLEIQARRRARAGLALQVDRAMYEPFAAGFPFEETADQL 614 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 +AI L+D+ M R++ GDVG GKT VA+ A AA AG Q ++ P +LA+QHY Sbjct: 615 AAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVLVPTTLLAEQHY 674 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + + + VE+++ + LE++A G +IIGTH L Q +++ L LV Sbjct: 675 RNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRLLQPDVKFKDLGLV 734 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 +VDE+ RFGV+Q+ L H+L +TATPIPRTL + G D+S I P R + Sbjct: 735 VVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPPNRLAV 794 Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516 +T I + + E +R LS G + Y++ +E S++ L E Sbjct: 795 QTFITAWDNTLLREAFQR---ELSRGGQLYFLHNDVE--------SIMRMQRDLSELVPE 843 Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575 + I I HG+M + + E VM F+ +L++TT+IE GID+ +A+ III A+ FGLAQ Sbjct: 844 ARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRFGLAQ 903 Query: 576 LHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630 LHQLRGRVGR + L+ ++ ++ RL + + ++ GF +A DL+ R Sbjct: 904 LHQLRGRVGRSHHRAYAYLVVPDRRAMTSDAEKRLEAIASMDELGAGFTLATHDLEIRGA 963 Query: 631 GEILGIKQSG 640 GE+LG QSG Sbjct: 964 GELLGEDQSG 973 >gi|311104675|ref|YP_003977528.1| transcription-repair coupling factor [Achromobacter xylosoxidans A8] gi|310759364|gb|ADP14813.1| transcription-repair coupling factor [Achromobacter xylosoxidans A8] Length = 1154 Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 144/408 (35%), Positives = 208/408 (50%), Gaps = 17/408 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q G N+ Q F T Q +AI+ ++ DM+ M R++ Sbjct: 580 LLALYAQRAAREGYAFNLPLNDYQAFAEGFGFEETVDQAAAIEAVIADMTSGRPMDRLVC 639 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VAL A AV G Q ++ P +LA+QH + + + V ++ Sbjct: 640 GDVGFGKTEVALRAAFLAVANGKQVALLCPTTLLAEQHAQTFSDRFADWPVKVVELSRFR 699 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A+E I G+ I+IGTH + +++ +L LVI+DE+HRFGV+Q+ L Sbjct: 700 SAKEVSAAVEGINDGRVDIVIGTHKILSKDVKFKRLGLVIIDEEHRFGVRQKEALKALRA 759 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV- 478 VL +TATPIPRTL ++ G D S I P R IKT + R D R ++ Sbjct: 760 EVDVLTLTATPIPRTLGMSLEGIRDFSVIATAPQKRLAIKTF---VRREDGSTLREALLR 816 Query: 479 -LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537 L G + Y++ ++E N R+ +E + IA+ HG+M + + E VM F Sbjct: 817 ELKRGGQCYFLHNEVETIH--NRRARLEELVP-----EARIAVAHGQMPERELEQVMKGF 869 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY- 596 +L+ TT+IE GIDV A+ I+I A+ FGLAQLHQLRGRVGR + LL Sbjct: 870 YQQRYNVLLCTTIIETGIDVPSANTIVIHRADRFGLAQLHQLRGRVGRSHHQAYAYLLTP 929 Query: 597 -HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 ++ N+ RL ++ E+ GF +A DL+ R GE+LG QSG Sbjct: 930 GEDAITNNAKKRLEAIQAMEELGSGFYLAMHDLEIRGTGEVLGDSQSG 977 >gi|289432962|ref|YP_003462835.1| transcription-repair coupling factor [Dehalococcoides sp. GT] gi|288946682|gb|ADC74379.1| transcription-repair coupling factor [Dehalococcoides sp. GT] Length = 1148 Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 132/385 (34%), Positives = 208/385 (54%), Gaps = 17/385 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q++ + + T Q A+ D+ +DM + M R++ GDVG GKT VA+ A AV G Sbjct: 598 QEMEASFSYVETPDQLKALYDVKEDMEKTRPMDRLILGDVGYGKTEVAIRAAFKAVMDGK 657 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY ++ + VE+++ Q+ +++ +E + G+ I IGT Sbjct: 658 QVAVLVPTTVLAQQHYTTFRERLATFPVKVEVLSRFRSQSEQKEVVENLEKGEVDICIGT 717 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q I++ L LV++DE+ RFGV + + VL ++ATPIPRTL ++ +G Sbjct: 718 HRLLQADIKFKDLGLVVIDEEQRFGVAHKEFFKKLRAQVDVLTLSATPIPRTLHMSMVGV 777 Query: 443 IDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500 D+S I P R PIKTV+ + I E I R + + +++ ++ Sbjct: 778 RDMSIIETPPGERLPIKTVVAAFDERLIREAILR---EMERNGQVFFVNNRV-----MGI 829 Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560 + ER L + I I HG+M++ +VM F +L+ TT+IE G+DV +A Sbjct: 830 NLLAERIQQLVPE--ARIGIGHGQMAEEKLAAVMADFVRHELDVLVCTTIIESGVDVPNA 887 Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616 + +II A+ FGL QL+QLRGRVGR +++ LY LS ++ RL + + Sbjct: 888 NTLIINRADRFGLTQLYQLRGRVGRSSQLAYAYFLYEKEKRLSGDAEKRLKTIYEAAELG 947 Query: 617 -GFLIAEEDLKQRKEGEILGIKQSG 640 G+ IA +DL+ R G +LG+KQSG Sbjct: 948 AGYGIAMKDLEIRGAGTLLGVKQSG 972 >gi|224543056|ref|ZP_03683595.1| hypothetical protein CATMIT_02256 [Catenibacterium mitsuokai DSM 15897] gi|224523996|gb|EEF93101.1| hypothetical protein CATMIT_02256 [Catenibacterium mitsuokai DSM 15897] Length = 1150 Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 140/437 (32%), Positives = 225/437 (51%), Gaps = 25/437 (5%) Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270 +P+ AK+ AR R D L I L R ++ G +G + + Sbjct: 548 SPKWAKE-----KARVRQKVDGLADDLINLYAERM---RQPGFAFEPDGDLQLEFESEFG 599 Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T Q A+++I +DM M R+L GDVG GKT VAL A A+ + Q + P Sbjct: 600 YELTPDQAQAVEEIKKDMETPRPMDRLLCGDVGFGKTEVALRACFKAIVSKKQCAFLCPT 659 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 IL+ QHY ++K + + + ++ +++ L + G +++GTH + + Sbjct: 660 TILSSQHYRTMQKRFEKFPVNIALLNRFTTTKEKKQILSDLKEGNIDLLVGTHRILSKDV 719 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L L+ +DE+ RFGV+Q+ K+ VL +TATPIPRTL ++ +G +S+I Sbjct: 720 EFKDLGLLCIDEEQRFGVRQKEKIKNLRKTIDVLTLTATPIPRTLQMSIMGIRGLSQIET 779 Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R P++T + + I +VIER LS + +++ + E N + Sbjct: 780 PPLNRLPVQTYVSEKSWALIKQVIER---ELSRNGQVFYLHNRTE-----NIYEIASTLQ 831 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 +L H + I + HG+M + E VM F +L+ TT+IE GID+ +A+ IIIENA Sbjct: 832 TLLPH--ARIGVGHGQMDKTELEDVMTDFVEKKYDILVCTTIIETGIDIPNANTIIIENA 889 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEE 623 + FGLAQL+Q++GRVGR I+ LLY +++ + RL+ +K G+ IA Sbjct: 890 DKFGLAQLYQIKGRVGRSARIAYAYLLYTKDRAMTEEAQKRLTAIKEFTQLGSGYKIAMR 949 Query: 624 DLKQRKEGEILGIKQSG 640 DL R G+ILG +Q+G Sbjct: 950 DLSIRGSGDILGGEQAG 966 >gi|254550004|ref|ZP_05140451.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length = 1234 Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 125/375 (33%), Positives = 207/375 (55%), Gaps = 13/375 (3%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F+ T Q +AI+++ DM + M R++ GDVG GKT +A+ A AV+ G Q ++ P Sbjct: 647 FTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 706 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA+QH + + + ++ ++ A R ++ +A G I+IGTH L Q + Sbjct: 707 TLLAEQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGV 766 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L LV+VDE+ RFGV+ + + T VL M+ATPIPRTL ++ G ++S I Sbjct: 767 RWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 826 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P R P+ T + P + ++ L+ L +A+++ + S+ + R L Sbjct: 827 PPEERYPVLTYVGPHDD-KQIAAALRRELLRDGQAFYV-----HNRVSSIDAAAARVREL 880 Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 + + + HG+M + E+ + F N +L+ TT++E G+D+ +A+ +I+E A+ Sbjct: 881 VPE--ARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADT 938 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625 FGL+QLHQLRGRVGR E LY P PL++ +Y RL+ + + G +A +DL Sbjct: 939 FGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDL 998 Query: 626 KQRKEGEILGIKQSG 640 + R G +LGI+QSG Sbjct: 999 EIRGAGNVLGIEQSG 1013 >gi|220904183|ref|YP_002479495.1| transcription-repair coupling factor [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868482|gb|ACL48817.1| transcription-repair coupling factor [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 1179 Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 134/425 (31%), Positives = 226/425 (53%), Gaps = 24/425 (5%) Query: 225 RERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284 + R A +++ A + + RK K G + G++ + F T Q AI+D+ Sbjct: 583 KARKAIEKIAADLVEMYAYRKVTK---GFRYDPPGELYHEFEATFGFEETPDQAKAIQDV 639 Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344 L DM + M R++ GDVG GKT VAL A A G Q ++ P +LA+QHY+ + Sbjct: 640 LDDMDRPRPMDRLVCGDVGFGKTEVALRAAFRAASEGRQVALLCPTTVLAEQHYQTFRAR 699 Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404 + V +++ +P+ +++ L+ A GQ I+IGTH + ++ L L+++DE+ Sbjct: 700 LAGFPVNVGLLSRFVPRPRQKEVLKAAAAGQIDILIGTHRILSSDVKLPNLTLLVLDEEQ 759 Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII- 463 RFGV+ + KL VL +TATPIPRTL L+ G ++S I P RKP+ + ++ Sbjct: 760 RFGVRHKEKLKALKKNVDVLTLTATPIPRTLQLSMSGIRELSIIETAPQDRKPVASAVLR 819 Query: 464 -PINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAI 520 N + +V+ER + EG + +W+ +++ E+ R +V + + + Sbjct: 820 KDDNVLRKVLER--EIEREG-QVFWVYNRVQGLERVAEYVRGLVP---------DARVGM 867 Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580 HG+MS+ + E M F +G +L+ T+++E G+D A+ ++++ A+ FGL QL+QLR Sbjct: 868 AHGQMSEAELEDTMHKFWHGELDVLVCTSIVESGLDFPRANTLVVDQAQMFGLGQLYQLR 927 Query: 581 GRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILG 635 GRVGR + + + L+ + RL ++ + + GF +A EDL+ R G ILG Sbjct: 928 GRVGRSDRQAYAFFVVPDAERLTAVAEERLRIILDMDYLGAGFQVAMEDLRLRGAGNILG 987 Query: 636 IKQSG 640 QSG Sbjct: 988 EVQSG 992 >gi|157825985|ref|YP_001493705.1| transcription-repair coupling factor [Rickettsia akari str. Hartford] gi|157799943|gb|ABV75197.1| Transcription-repair coupling factor [Rickettsia akari str. Hartford] Length = 1121 Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 144/441 (32%), Positives = 238/441 (53%), Gaps = 39/441 (8%) Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQ--KILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 +IAL L++ K+++ VE + + K N PFS T+ Q +AI DI +D+ M Sbjct: 540 EIALHLIQIAAKRKLNSSAAVEFDLEEYDKFCANFPFSETEDQLTAINDIKEDLRNGLLM 599 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHY----EFIKKYTQ 346 R++ GDVG GKT VA+ A+ ++ Q ++ P IL QH+ E K + Sbjct: 600 DRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQHFSRFIERFKGFGL 659 Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406 N + + +++ + R + + G+ +II+GTH+L +I+++ L L+I+DE+ F Sbjct: 660 NIKQLSSVVSSKEAKIIRAE----LESGKINIIVGTHSLLHKNIKFFNLKLLIIDEEQHF 715 Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466 GV Q+ L ++ HVL M+ATPIPRTL ++ G ++S I P R ++T+++P Sbjct: 716 GVGQKEFLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTMVMP-- 773 Query: 467 RIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAII 521 D VI R +L E G +++++ +I+ E E + +V S I Sbjct: 774 -FDSVIIR-DALLREHFRGGRSFYVVSRIKDIEDIEKQLKHIVPEL---------SYKIA 822 Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581 HG+M+ + VM F G +L++TT+IE GID+ +A+ +II A+ GL+QL+QLRG Sbjct: 823 HGKMTPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANTMIIHKADMLGLSQLYQLRG 882 Query: 582 RVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGI 636 R+GRG+ L H ++ +S RL +++N+ GF IA D+ R G ++G Sbjct: 883 RIGRGKVRGYAYLTVANHKKMTSHSLRRLEIIQNSCALGSGFTIASHDMDLRGFGNLIGE 942 Query: 637 KQSGMPKFLIAQPELHDSLLE 657 +QSG K + EL+ +LE Sbjct: 943 EQSGQIKEV--GTELYQEMLE 961 >gi|255010538|ref|ZP_05282664.1| putative transcription-repair coupling factor [Bacteroides fragilis 3_1_12] Length = 1125 Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 137/409 (33%), Positives = 219/409 (53%), Gaps = 17/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + Q ++E G + + + +++ + + T Q A D+ QDM + M R++ Sbjct: 526 LIKLYSQRREEKGFAYSPDSFLQRELEASFIYEDTPDQSKATADVKQDMERDMPMDRLVC 585 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LA QH++ + + VE ++ Sbjct: 586 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRDRLKGLPCRVEYLSRAR 645 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A + ++ + G +I+IGTH + +++ L L+I+DE+ +FGV + KL Q Sbjct: 646 TAAQAKAVIKGLETGDVNILIGTHRILGKDVKFKDLGLLIIDEEQKFGVSVKEKLRQMKV 705 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478 L MTATPIPRTL + +G D+S I+ P R PI+T + + +EVI + + Sbjct: 706 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFS--EEVIADAINFE 763 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 +S + + + +I E ++++ L IAI HG+M ++ E ++ F Sbjct: 764 MSRNGQVFLVNNRIANLPE--LKAMI-----LRRIPDCRIAIGHGQMEPVELEQIIFGFV 816 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 N +LIATT+IE GID+ +A+ III A++FGL+ LHQ+RGRVGR + + C LL P Sbjct: 817 NYDYDVLIATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-AP 875 Query: 599 PLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 PLS + RL ++N D G IA +DL R G +LG +QSG Sbjct: 876 PLSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 924 >gi|163856004|ref|YP_001630302.1| transcription-repair coupling factor [Bordetella petrii DSM 12804] gi|163259732|emb|CAP42033.1| transcription-repair coupling factor [Bordetella petrii] Length = 1153 Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 139/377 (36%), Positives = 201/377 (53%), Gaps = 17/377 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q +AI+ ++ DM+ M R++ GDVG GKT VAL A AV G Q ++ P Sbjct: 610 FEETADQSAAIQAVIADMTSGRPMDRLVCGDVGFGKTEVALRAAFLAVANGKQVALLCPT 669 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA+QH + + + V ++ A++ I G+ I+IGTH + + Sbjct: 670 TLLAEQHAQTFSDRFADWPVRVVELSRFRSSKEVADAVQGINDGRVDIVIGTHKILSKDV 729 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL ++ G D S I Sbjct: 730 RFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMSLEGIRDFSVIAT 789 Query: 451 KPAGRKPIKTVIIPINRID--EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508 P R IKT + R D + E L L G +AY++ ++E N R+ +E Sbjct: 790 APQKRLAIKTF---VRREDGSTIREALLRELKRGGQAYFLHNEVETIH--NRRARIEELV 844 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 + IA+ HG+M + + E VM F +L+ TT+IE GIDV A+ I+I A Sbjct: 845 P-----EARIAVAHGQMPERELEQVMKGFYQQRYNVLLCTTIIETGIDVPTANTIVIHRA 899 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623 + FGLAQLHQLRGRVGR + LL ++ N+ RL ++ E+ GF +A Sbjct: 900 DRFGLAQLHQLRGRVGRSHHQAYAYLLTPGEDAITSNAKKRLEAIQAMEELGSGFYLAMH 959 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R GE+LG QSG Sbjct: 960 DLEIRGTGEVLGESQSG 976 >gi|327542005|gb|EGF28505.1| Transcription-repair-coupling factor [Rhodopirellula baltica WH47] Length = 1140 Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 147/478 (30%), Positives = 254/478 (53%), Gaps = 30/478 (6%) Query: 210 HNPRKAK--DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267 + P+ AK WT+ + A +A + LL ++ + +GIP++ + + ++ Sbjct: 541 NRPKLAKIGGISWTNQKKAAEAAVTDMADE--LLELQAKRATRLGIPMSPDNEWQRQFDA 598 Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + P+ T Q SAI+ + DM M R++ GDVG GKT VA+ A AV +G Q ++ Sbjct: 599 SFPYLETPDQLSAIEALKIDMEAPRPMDRLICGDVGFGKTEVAMRAAFKAVSSGYQVAVL 658 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P +LA+QHY+ ++ + + ++ A +R+ ++ I G+A I+IGTH + Sbjct: 659 VPTTVLAEQHYQSFRERMAEFPVEIRKLSRFCTPAEQRETVKEIRRGKADIVIGTHRVAS 718 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 +++ L LV++DE+ RFGV + +L + + VL ++ATPIPRTL + +G DIS Sbjct: 719 KDVEFNNLGLVVIDEEQRFGVAVKERLKTRHSNVDVLTLSATPIPRTLHMALVGVRDISN 778 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKE--SNFRSV 503 + PA R ++T + R D+ + R +V L+ G + Y++ +I + + + +++ Sbjct: 779 LETPPAERMAVET---KVTRWDDKMLRSAIVRELNRGGQMYFVHNRIGDMDDLAARIKAI 835 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 V I I HG+M + E +M F + +L+ATT+IE G+D+ +A+ + Sbjct: 836 VPELR---------IGIGHGQMEEGALEQIMVDFIDHKFDMLLATTIIESGLDIPNANTM 886 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GF 618 I++ +GL+ LHQLRGRVGR + + C LL P L+ + RL ++ GF Sbjct: 887 FIDDGNRYGLSDLHQLRGRVGRYKHQAYCYLLVSPNKRLTPEASKRLRAIEEYSQMGAGF 946 Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI---LTQDPDL 673 I+ DL+ R G +LG +QSG E++ LLE A + A+ + L+ D D+ Sbjct: 947 AISMRDLEIRGAGNLLGSQQSG--HIAAVGYEMYCQLLEDAVRQAQKLPPKLSADVDI 1002 >gi|73748965|ref|YP_308204.1| transcription-repair coupling factor [Dehalococcoides sp. CBDB1] gi|73660681|emb|CAI83288.1| transcription-repair coupling factor [Dehalococcoides sp. CBDB1] Length = 1148 Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 132/385 (34%), Positives = 208/385 (54%), Gaps = 17/385 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q++ + + T Q A+ D+ +DM + M R++ GDVG GKT VA+ A AV G Sbjct: 598 QEMEASFSYVETPDQLKALYDVKEDMEKTRPMDRLILGDVGYGKTEVAIRAAFKAVMDGK 657 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY ++ + VE+++ Q+ +++ +E + G+ I IGT Sbjct: 658 QVAVLVPTTVLAQQHYTTFRERLATFPVKVEVLSRFRSQSEQKEVVENLEKGEVDICIGT 717 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q I++ L LV++DE+ RFGV + + VL ++ATPIPRTL ++ +G Sbjct: 718 HRLLQADIKFKDLGLVVIDEEQRFGVAHKEFFKKLRAQVDVLTLSATPIPRTLHMSMVGV 777 Query: 443 IDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500 D+S I P R PIKTV+ + I E I R + + +++ ++ Sbjct: 778 RDMSIIETPPGERLPIKTVVAAFDERLIREAILR---EMERNGQVFFVNNRV-----MGI 829 Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560 + ER L + I I HG+M++ +VM F +L+ TT+IE G+DV +A Sbjct: 830 NLLAERIQQLVPE--ARIGIGHGQMAEEKLAAVMADFVRHELDVLVCTTIIESGVDVPNA 887 Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616 + +II A+ FGL QL+QLRGRVGR +++ LY LS ++ RL + + Sbjct: 888 NTLIINRADRFGLTQLYQLRGRVGRSSQLAYAYFLYEKEKRLSGDAEKRLKTIYEAAELG 947 Query: 617 -GFLIAEEDLKQRKEGEILGIKQSG 640 G+ IA +DL+ R G +LG+KQSG Sbjct: 948 AGYGIAMKDLEIRGAGTLLGVKQSG 972 >gi|187477560|ref|YP_785584.1| transcription-repair coupling factor [Bordetella avium 197N] gi|115422146|emb|CAJ48670.1| transcription-repair coupling factor [Bordetella avium 197N] Length = 1145 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 145/408 (35%), Positives = 208/408 (50%), Gaps = 17/408 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 LL + Q G N+ + F T Q +AI+ ++ DM+ M R++ Sbjct: 571 LLALYAQRAAREGYAFNLPLSDYESFAEGFGFEETVDQSAAIQAVIMDMTSGKPMDRLVC 630 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VAL A AV G Q ++ P +LA+QH + + + V ++ Sbjct: 631 GDVGFGKTEVALRAAFLAVANGKQVALLCPTTLLAEQHAQTFSDRFADWPVRVVELSRFR 690 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A+E I G+ I+IGTH + +++ +L LVI+DE+HRFGV+Q+ L Sbjct: 691 SAKEVAAAVEGINDGRVDIVIGTHKILSKEVRFKRLGLVIIDEEHRFGVRQKEALKALRA 750 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID--EVIERLKV 477 VL +TATPIPRTL ++ G D S I P R IKT + R D + E L Sbjct: 751 EVDVLTLTATPIPRTLGMSLEGIRDFSVIATAPQKRLAIKTF---VRREDGSTIREALLR 807 Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537 L G +AY++ ++E N R+ +E + I + HG+M + + E VM F Sbjct: 808 ELKRGGQAYFLHNEVETIH--NRRARLEELVP-----EARIGVAHGQMPERELEQVMKGF 860 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY- 596 +L+ TT+IE GIDV A+ I+I A+ FGLAQLHQLRGRVGR + LL Sbjct: 861 YQQRYNVLLCTTIIETGIDVPSANTIVIHRADRFGLAQLHQLRGRVGRSHHQAYAYLLTP 920 Query: 597 -HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 ++ N+ RL ++ E+ GF +A DL+ R GEILG QSG Sbjct: 921 GEDAITANAKKRLEAIQAMEELGSGFYLAMHDLEIRGTGEILGDSQSG 968 >gi|294011405|ref|YP_003544865.1| transcription-repair coupling factor [Sphingobium japonicum UT26S] gi|292674735|dbj|BAI96253.1| transcription-repair coupling factor [Sphingobium japonicum UT26S] Length = 1154 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 137/401 (34%), Positives = 220/401 (54%), Gaps = 26/401 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q+ AI D+++D+ M R++ GDVG GKT VAL A A AG Q V++ P Sbjct: 605 PYQETDDQDRAISDVIEDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMAGMQVVVICP 664 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QH+ ++ + + + ++ +P + +A G I++GTHAL Sbjct: 665 TTLLARQHHMNFEERFRGFPVKIGRLSRLVPDKEAKAVKAGLADGTVDIVVGTHALLAKG 724 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +++ +L LVIVDE+ RFGV + +L T HVL +TATPIPRTL + G ++S I Sbjct: 725 LEFKRLGLVIVDEEQRFGVTHKERLKSLKTDVHVLTLTATPIPRTLQMAMSGLRELSVIQ 784 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R ++T I+P D V+ R + +L E G +++++ P+I + E +E Sbjct: 785 TPPVDRLAVRTYIMP---WDGVVIR-EALLREHYRGGQSFFVVPRISDLTE------IEE 834 Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 F + + HG+MS + E M +F + +L++TT++E G+D+ A+ +II Sbjct: 835 FLRTEVPEVRPV-VAHGQMSATEVEERMSAFYDRRYDVLLSTTIVESGLDIPSANTLIIH 893 Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GFL 619 A+ FGLAQL+QLRGRVGR + + + P +++ + RL VL + + GF Sbjct: 894 RADRFGLAQLYQLRGRVGRAK--TRAYAYFTTPANRVITETAEKRLKVLSDLDTLGAGFQ 951 Query: 620 IAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLE 657 +A DL R G ++G +QSG K F + Q L D++LE Sbjct: 952 LASHDLDIRGAGNLVGDEQSGHIKEVGFELYQSMLEDAILE 992 >gi|147669732|ref|YP_001214550.1| transcription-repair coupling factor [Dehalococcoides sp. BAV1] gi|146270680|gb|ABQ17672.1| transcription-repair coupling factor [Dehalococcoides sp. BAV1] Length = 1148 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 132/385 (34%), Positives = 208/385 (54%), Gaps = 17/385 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 Q++ + + T Q A+ D+ +DM + M R++ GDVG GKT VA+ A AV G Sbjct: 598 QEMEASFSYVETPDQLKALYDVKEDMEKPRPMDRLILGDVGYGKTEVAIRAAFKAVMDGK 657 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q ++ P +LAQQHY ++ + VE+++ Q+ +++ +E + G+ I IGT Sbjct: 658 QVAVLVPTTVLAQQHYTTFRERLATFPVKVEVLSRFRSQSEQKEVVENLEKGEVDICIGT 717 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L Q I++ L LV++DE+ RFGV + + VL ++ATPIPRTL ++ +G Sbjct: 718 HRLLQADIKFKDLGLVVIDEEQRFGVAHKEFFKKLRAQVDVLTLSATPIPRTLHMSMVGV 777 Query: 443 IDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500 D+S I P R PIKTV+ + I E I R + + +++ ++ Sbjct: 778 RDMSIIETPPGERLPIKTVVAAFDERLIREAILR---EMERNGQVFFVNNRV-----MGI 829 Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560 + ER L + I I HG+M++ +VM F +L+ TT+IE G+DV +A Sbjct: 830 NLLAERIQQLVPE--ARIGIGHGQMAEEKLAAVMADFVRHELDVLVCTTIIESGVDVPNA 887 Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616 + +II A+ FGL QL+QLRGRVGR +++ LY LS ++ RL + + Sbjct: 888 NTLIINRADRFGLTQLYQLRGRVGRSSQLAYAYFLYEKEKRLSGDAEKRLKTIYEAAELG 947 Query: 617 -GFLIAEEDLKQRKEGEILGIKQSG 640 G+ IA +DL+ R G +LG+KQSG Sbjct: 948 AGYGIAMKDLEIRGAGTLLGVKQSG 972 >gi|313894846|ref|ZP_07828406.1| transcription-repair coupling factor [Selenomonas sp. oral taxon 137 str. F0430] gi|312976527|gb|EFR41982.1| transcription-repair coupling factor [Selenomonas sp. oral taxon 137 str. F0430] Length = 1094 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 143/420 (34%), Positives = 223/420 (53%), Gaps = 30/420 (7%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q AI++I +DM + M R+L GDVG GKT VA+ A A G Q ++ P Sbjct: 549 PYEETEDQLRAIEEIKRDMESERPMDRLLCGDVGFGKTEVAVRAAFKAAMDGFQVAVLVP 608 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LAQQHY+ + V+++ + + L + G+ I+IGTHA+ + Sbjct: 609 TTVLAQQHYQTFAARFADFAPKVDVVCRFRTPREQAETLREVERGRVDILIGTHAILNRT 668 Query: 390 -IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 + + KL L+IVDE+ RFGV Q+ ++ + A VL ++ATPIPRTL ++ G D+S I Sbjct: 669 RVHFRKLGLLIVDEEQRFGVTQKERIKEFAAGVDVLTLSATPIPRTLHMSLAGARDMSII 728 Query: 449 TEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506 PA R P+++ ++ + + IER LS G + Y+I + VE Sbjct: 729 ETPPADRLPVQSYVVESSDAMMRGAIER---ELSRGGQVYFIYNR------------VES 773 Query: 507 FNSLHEHF-----TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561 + + EH + IA HG+M++ E VM F G +L+AT++IE GIDV +A+ Sbjct: 774 IDRMREHLLRLVPEARIATAHGQMNEDILEQVMMDFYEGHYDILLATSIIENGIDVANAN 833 Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTED 616 +II +A+ FGL+QL+Q+RGRVGR +++ Y LS+ + RL +K Sbjct: 834 TVIIYDADRFGLSQLYQMRGRVGRSAKMAFAYFTYRRDKVLSETAEKRLQAMKEFAQLGS 893 Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676 GF IA DL+ R G +LG +Q G E++ LLE A + + + P++ V Sbjct: 894 GFKIAMRDLEIRGAGSLLGAQQHG--HIAGVGFEMYVKLLEEAVAKRRGVAKESPEVEPV 951 >gi|309389992|gb|ADO77872.1| transcription-repair coupling factor [Halanaerobium praevalens DSM 2228] Length = 1160 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 135/380 (35%), Positives = 202/380 (53%), Gaps = 17/380 (4%) Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327 + PF T Q+ AI + DM M R+L GDVG GKT VA+ A A A Q ++ Sbjct: 616 SFPFEETPDQKKAISALKSDMESIKPMDRLLCGDVGYGKTEVAIRAAFKAALASKQTAVL 675 Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387 P ILAQQHY + + + V I++ A +RK L+R+ G+ I+IGTH L Sbjct: 676 VPTTILAQQHYNTFSERIEEFPVRVGILSRFNTAAEQRKTLKRLIKGEIDILIGTHRLLS 735 Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447 + + L L+I+DE+ RFGV + KL VL +TATPIPRTL + +G D+S Sbjct: 736 KDVIFADLGLLIIDEEQRFGVTHKEKLKDLKRNVDVLTLTATPIPRTLHMALVGVRDMSL 795 Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505 I P R PI+T I N + + ++ L+ + Y++ +++ EK + ++ Sbjct: 796 IETPPENRYPIRTFIKEDNS-ELITSAIRRELARNGQIYFVHNRVKDIEKTAGKLQKLMP 854 Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 + IA+ HG+M++ E +M F +L+ TT+IE G+D+ + + III Sbjct: 855 E---------AKIAVAHGQMNEKRLEKIMYDFYQQKFDILVCTTIIETGLDIPNVNTIII 905 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLI 620 +A+ GL+QL+QLRGRVGR I+ LLY L++ + RL +K GF I Sbjct: 906 NHADRMGLSQLYQLRGRVGRTNRIAYAYLLYEKDRILAEVAEKRLEAIKEFSSLGSGFKI 965 Query: 621 AEEDLKQRKEGEILGIKQSG 640 A DL+ R G +LG +QSG Sbjct: 966 AMRDLEIRGAGNLLGPEQSG 985 >gi|315223854|ref|ZP_07865702.1| transcription-repair coupling factor [Capnocytophaga ochracea F0287] gi|314946184|gb|EFS98185.1| transcription-repair coupling factor [Capnocytophaga ochracea F0287] Length = 1109 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 129/378 (34%), Positives = 208/378 (55%), Gaps = 17/378 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 + T Q A ++ DM M R++ GDVG GKT VA+ A AV+ G Q ++ P Sbjct: 550 YEDTPDQSKATAEVKADMESPKPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPT 609 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA QH++ + ++ + ++ + ++ LE +A+GQ IIIGTH + + + Sbjct: 610 TVLAFQHFQTFSQRMKDFPVRIDYLNRFRTAKEKKIILEELANGQLDIIIGTHQIVGEKV 669 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 Y L L+IVDE+ +FGV + KL VL +TATPIPRTL + + D+S I Sbjct: 670 AYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLMAARDLSVINT 729 Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P R PI + ++P + +E+I + ++ + G + +++ ++E +E +++R Sbjct: 730 PPPNRYPIDSQVVPFS--EEIIRDGIRYEIQRGGQVFFMHNRVENIQE--VAGMIQRLLP 785 Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 + IAI HG+M E M +F +G +L+ATT+IE G+DV +A+ I I NA Sbjct: 786 -----DARIAIGHGQMDGKKLEETMLAFMDGAYDVLVATTIIENGLDVPNANTIFINNAH 840 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPL---SKNSYTRLSVLKNTED---GFLIAEE 623 +FGL+ LHQ+RGRVGR + + C + PPL S ++ R+ + D G IA + Sbjct: 841 NFGLSDLHQMRGRVGRSNKKAFCFFI-TPPLVAMSDDARKRIEAIAQFSDLGSGLNIAMK 899 Query: 624 DLKQRKEGEILGIKQSGM 641 DL+ R G++LG +QSG Sbjct: 900 DLEIRGAGDLLGGEQSGF 917 >gi|160888992|ref|ZP_02069995.1| hypothetical protein BACUNI_01412 [Bacteroides uniformis ATCC 8492] gi|156861459|gb|EDO54890.1| hypothetical protein BACUNI_01412 [Bacteroides uniformis ATCC 8492] Length = 1129 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 136/410 (33%), Positives = 219/410 (53%), Gaps = 19/410 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + Q ++E G + + + +++ + + T Q A D+ DM M R++ Sbjct: 531 LIKLYSQRREEKGFQYSPDSFLQRELEASFIYEDTPDQSKATSDVKVDMESARPMDRLVC 590 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LA QH++ K+ + VE ++ Sbjct: 591 GDVGFGKTEVAVRAAFKAVADNKQVAVLVPTTVLAYQHFQTFKERLKGLPCRVEYLSRAR 650 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 + ++ +A G+ +I+IGTH + +++ L L+I+DE+ +FGV + KL Q Sbjct: 651 TAVQAKAVVKGLAEGEVNILIGTHRILGKDVKFKDLGLLIIDEEQKFGVSVKEKLRQLKV 710 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478 L MTATPIPRTL + +G D+S I P R PI+T + N +E+I + + Sbjct: 711 NVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFN--EEIIADAVNFE 768 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537 +S + +++ +I E ++++ER H + I HG+M + E ++ F Sbjct: 769 MSRNGQVFFVNNRISNLVE--LKAMIER------HIPDCRVCIGHGQMEPAELEKIIFDF 820 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 N +L+ATT+IE GID+ +A+ III A++FGL+ LHQ+RGRVGR + + C LL Sbjct: 821 VNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-A 879 Query: 598 PPLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 PPLS + RL ++N D G IA +DL R G +LG +QSG Sbjct: 880 PPLSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 929 >gi|23013145|ref|ZP_00053081.1| COG1200: RecG-like helicase [Magnetospirillum magnetotacticum MS-1] Length = 205 Score = 208 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 101/203 (49%), Positives = 142/203 (69%) Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557 S+ + ER L + F + ++HGRM K+ VM F G +L+ATTVIEVG+DV Sbjct: 3 SDLAAAEERHRHLSQMFGDRVGLVHGRMKPTAKDKVMAEFAAGNLDILVATTVIEVGVDV 62 Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617 +A+I++IE+AE FGLAQLHQLRGRVGRG S C+LLY PL + + RL +++ TEDG Sbjct: 63 PEANIMVIEHAERFGLAQLHQLRGRVGRGSRESRCLLLYGHPLGEIAKARLEIMRATEDG 122 Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677 F IAEEDL+ R GE+LG +QSG+P+F +A +H LL AR DA+ IL +DP+L S R Sbjct: 123 FRIAEEDLRLRGGGEMLGTRQSGLPEFRLADLAIHGELLAAARDDARLILERDPELASPR 182 Query: 678 GQSIRILLYLYQYNEAFQFIRAG 700 G+++R+LLYL++ + A + +R+G Sbjct: 183 GEALRVLLYLFERDAAVRTLRSG 205 >gi|20808914|ref|NP_624085.1| transcription-repair coupling factor [Thermoanaerobacter tengcongensis MB4] gi|20517574|gb|AAM25689.1| Transcription-repair coupling factor - superfamily II helicase [Thermoanaerobacter tengcongensis MB4] Length = 1169 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 152/463 (32%), Positives = 243/463 (52%), Gaps = 38/463 (8%) Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFK 248 DL+QK P+ NP K EW R+ E LA + L ++Q Sbjct: 551 DLVQKYVGPT--------DNPPKLNKLGGGEWIRAKRKAKKAAEDLAKDLIELYAKRQMA 602 Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308 K G + + ++ P+ T+ Q IK+I +DM + M R+L GDVG GKT Sbjct: 603 K--GHAFSPDTPWQKEFEDQFPYEETEDQLRCIKEIKEDMEKDKPMDRLLCGDVGYGKTE 660 Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHY-EFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 VAL A AV G Q + P ILA QHY F++++ + + +E+++ + + Sbjct: 661 VALRAAFKAVADGKQVAFLCPTTILAYQHYTNFLERFKE-FPVKIEMLSRFRTPKEQAQI 719 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 ++ +A G I++GTH L Q+ +++ L L+I+DE+ RFGV + K+ + VL ++ Sbjct: 720 IKGLADGTIDIVVGTHRLLQNDVKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLS 779 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKK 484 ATPIPRTL ++ +G D+S + P R P++T ++ N +E+I+ +L E G + Sbjct: 780 ATPIPRTLHMSLIGIRDMSILENPPEDRFPVETYVVEFN--EELIK--DAILREVGRGGQ 835 Query: 485 AYWICPQIEE-KKESNF-RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542 Y++ +++ +K +NF + +V IA+ HG+M + E VM F G Sbjct: 836 VYFVYNRVQGIEKMANFIKELVP---------NCRIAVAHGQMEENKLEQVMVDFLKGEY 886 Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--L 600 +L+ TT+IE G+D+ + + II+ +A+ GLAQL+QLRGRVGR ++ Y L Sbjct: 887 DVLVTTTIIETGLDIPNVNTIIVYDADKLGLAQLYQLRGRVGRSNRLAYAYFTYRKDKVL 946 Query: 601 SKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640 S+ + RL +K TE GF IA DL+ R G +LG +Q G Sbjct: 947 SEVAEKRLEAIKEFTEFGSGFKIAMRDLEIRGAGNLLGAEQHG 989 >gi|163746248|ref|ZP_02153606.1| transcription-repair coupling factor [Oceanibulbus indolifex HEL-45] gi|161380133|gb|EDQ04544.1| transcription-repair coupling factor [Oceanibulbus indolifex HEL-45] Length = 1156 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 137/399 (34%), Positives = 221/399 (55%), Gaps = 23/399 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P++ T Q AI D++ D++ N M R++ GDVG GKT VA+ A A +G Q ++AP Sbjct: 594 PYTETDDQLRAIGDVVDDLTSGNPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVAVIAP 653 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHY+ + + I V ++ + + +A G I+IGTHAL Sbjct: 654 TTLLARQHYKSFAERFRGFPIEVRQLSRFVSAKEATATRDGMAKGTVDIVIGTHALLAKG 713 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ L L+++DE+ FGV + +L T HVL +TATPIPRTL L+ G D+S I Sbjct: 714 IRFKDLGLLVIDEEQHFGVSHKERLKSLRTDIHVLTLTATPIPRTLQLSLTGVRDLSVIG 773 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R I+T ++ D V R + +L E G +++++ P++ + +E +E Sbjct: 774 TPPVDRLSIRTY---VSEFDAVTIR-EALLREHYRGGQSFYVVPRLSDLRE------IED 823 Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 F L S + HG+M+ + + M++F +G +L+ATT++E G+D+ A+ +++ Sbjct: 824 F--LQAQLPELSYVVAHGQMAPGELDDRMNAFYDGKFDVLLATTIVESGLDIPTANTMVV 881 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 A+ FGLAQL+Q+RGRVGR + + L P L+ + RL VL + + GF + Sbjct: 882 HRADMFGLAQLYQIRGRVGRSKTRAYAYLTTKPRAKLTDTAQKRLRVLGSLDTLGAGFTL 941 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 A +DL R G +LG +QSG + + EL+ S+LE A Sbjct: 942 ASQDLDIRGAGNLLGEEQSGQMRDV--GFELYQSMLEEA 978 >gi|303237011|ref|ZP_07323583.1| transcription-repair coupling factor [Prevotella disiens FB035-09AN] gi|302482791|gb|EFL45814.1| transcription-repair coupling factor [Prevotella disiens FB035-09AN] Length = 1194 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 126/399 (31%), Positives = 215/399 (53%), Gaps = 13/399 (3%) Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 + E G + + + ++ + + T Q A +++ QDM M R++ GDVG GKT Sbjct: 609 RHEKGFAFSPDSYLQHELEASFLYEDTPDQLKATQELKQDMESARPMDRLVCGDVGFGKT 668 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 VA+ A A G Q ++ P +LA QHY+ KK +N + V+ ++ ++ Sbjct: 669 EVAVRAAFKAATDGKQVAVLVPTTVLAFQHYQTFKKRLKNMPVTVDYLSRARTAKQTKQV 728 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 + ++ G+ I++GTH L S+++ + L+I+DE+ +FGV + KL Q + L M+ Sbjct: 729 ITDLSEGKIDILVGTHKLISKSVKWKDIGLLIIDEEQKFGVSTKEKLRQLKSNVDTLTMS 788 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487 ATPIPRTL + +G D+S + P R PI+T I + + + + + +S + ++ Sbjct: 789 ATPIPRTLQFSLMGARDMSIMRTPPPNRYPIQTEISTFS-AETIADAINFEMSRNGQVFF 847 Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 + +I E S+++++ +AI HG+M + E ++ F N +L++ Sbjct: 848 VNDRIANLPE--LASLIKKYVP-----DCRVAIGHGQMKPEELEEIIIGFMNHDYDVLLS 900 Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSY 605 TT++E GID+ +A+ III +A FGL+ LHQ+RGRVGR + + C LL P L+ ++ Sbjct: 901 TTIVENGIDISNANTIIINDAHKFGLSDLHQMRGRVGRSNKKAFCYLLAPPLAALNPDAR 960 Query: 606 TRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 RL L+ D GF +A +DL R G +LG +QSG Sbjct: 961 RRLEALETFSDLGSGFNLAMQDLDIRGAGNLLGSEQSGF 999 >gi|289757102|ref|ZP_06516480.1| LOW QUALITY PROTEIN: transcription-repair coupling factor Mfd [Mycobacterium tuberculosis T85] gi|289712666|gb|EFD76678.1| LOW QUALITY PROTEIN: transcription-repair coupling factor Mfd [Mycobacterium tuberculosis T85] Length = 849 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 125/375 (33%), Positives = 206/375 (54%), Gaps = 13/375 (3%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F+ T Q +AI+++ DM + M R++ GDVG GKT +A+ A AV+ G Q ++ P Sbjct: 262 FTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 321 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA QH + + + ++ ++ A R ++ +A G I+IGTH L Q + Sbjct: 322 TLLADQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGV 381 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L LV+VDE+ RFGV+ + + T VL M+ATPIPRTL ++ G ++S I Sbjct: 382 RWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 441 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P R P+ T + P + ++ L+ L +A+++ + S+ + R L Sbjct: 442 PPEERYPVLTYVGPHDD-KQIAAALRRELLRDGQAFYV-----HNRVSSIDAAAARVREL 495 Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 + + + HG+M + E+ + F N +L+ TT++E G+D+ +A+ +I+E A+ Sbjct: 496 VPE--ARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADT 553 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625 FGL+QLHQLRGRVGR E LY P PL++ +Y RL+ + + G +A +DL Sbjct: 554 FGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDL 613 Query: 626 KQRKEGEILGIKQSG 640 + R G +LGI+QSG Sbjct: 614 EIRGAGNVLGIEQSG 628 >gi|160898289|ref|YP_001563871.1| transcription-repair coupling factor [Delftia acidovorans SPH-1] gi|160363873|gb|ABX35486.1| transcription-repair coupling factor [Delftia acidovorans SPH-1] Length = 1164 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 149/431 (34%), Positives = 222/431 (51%), Gaps = 21/431 (4%) Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 ++ + F T Q +AI ++QDM M R++ GDVG GKT VAL A A+ G Sbjct: 601 EQFANDFGFEETADQRAAIHAVIQDMISPQPMDRLVCGDVGFGKTEVALRAAFVAITGGK 660 Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382 Q +AP +LA+QHY+ + I V ++ A++ IA G I++GT Sbjct: 661 QVAFLAPTTLLAEQHYQTLVDRFSKWPIKVAEVSRFRSGKEITAAVKGIADGSVDIVVGT 720 Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442 H L +S Q+ L L+I+DE+HRFGV+ + + VL +TATPIPRT+ + G Sbjct: 721 HKLLSESTQFKNLGLLIIDEEHRFGVRHKEAMKAMRAEVDVLTLTATPIPRTMGMALEGL 780 Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFR 501 D+S I P R IKT + N VI E + L G + Y++ ++E Sbjct: 781 RDLSVIATAPQRRLAIKTFV--RNEGTGVIREAVLRELKRGGQCYFLHNEVE-------- 830 Query: 502 SVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560 ++ R L E + IA+ HG+M + + E VM F +L+ +T+IE GIDV + Sbjct: 831 TIENRKQKLEEILPEARIAVAHGQMPERELERVMRDFVAQRYNILLCSTIIETGIDVPSS 890 Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED-- 616 + I+I A+ FGLAQLHQLRGRVGR + L+ L+K + RL ++ E+ Sbjct: 891 NTILISRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDLDSLTKQAQQRLEAIQQMEELG 950 Query: 617 -GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675 GF +A DL+ R GE+LG QSG + +L++ +L A + K ++PDL S Sbjct: 951 SGFYLAMHDLEIRGAGEVLGENQSG--NMMEVGFQLYNEMLSEAVRSLK--AGKEPDLLS 1006 Query: 676 VRGQSIRILLY 686 S I L+ Sbjct: 1007 PLSASTDINLH 1017 >gi|83311564|ref|YP_421828.1| transcription-repair coupling factor [Magnetospirillum magneticum AMB-1] gi|82946405|dbj|BAE51269.1| Transcription-repair coupling factor [Magnetospirillum magneticum AMB-1] Length = 1134 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 149/436 (34%), Positives = 233/436 (53%), Gaps = 26/436 (5%) Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297 I + RK + E +P EG + + PF+ T+ Q AI+D + D++ M R+ Sbjct: 557 IGIAAQRKMRQGEALVP--AEG-LYDEFCARFPFAETEDQMRAIEDSIADLASGKPMDRL 613 Query: 298 LQGDVGSGKTLVAL-IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356 + GDVG GKT VA+ +A AA++ G Q ++ P +LA+QHY K+ + VE ++ Sbjct: 614 ICGDVGFGKTEVAMRVAFVAALQ-GLQVAVVVPTTLLARQHYRTFKERFSGLPVRVEQLS 672 Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 + + +A G +++GTHAL I + +L L+I+DE+ FGV + +L Q Sbjct: 673 RLVTAKTASEVKAGVADGSVDVVVGTHALLAKGIGFKRLGLLIIDEEQHFGVAHKERLKQ 732 Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476 HVL +TATPIPRTL + G ++S I P R ++T ++P D V+ R + Sbjct: 733 LKADVHVLTLTATPIPRTLQMALSGVKEMSVIATPPIDRLAVRTFVLP---YDPVVLR-E 788 Query: 477 VVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533 +L E G + +++CP++ ++ V ER L +++A HGR++ D E V Sbjct: 789 SILRERYRGGQVFYVCPRL-----ADIDRVAERLAKLVPEVKTAVA--HGRLAPADLEEV 841 Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE--ISS 591 M +F +L++T +IE GID+ + +II A+ FGL QL+QLRGRVGRG+ + Sbjct: 842 MVAFGEKQYDVLLSTNIIESGIDMPSVNTLIIHRADMFGLGQLYQLRGRVGRGKTRGYAY 901 Query: 592 CILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648 L LSK + RL V++ + GF +A DL R G +LG +QSG + + Sbjct: 902 FTLPNDKVLSKAAEKRLQVMQALDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIREVGV- 960 Query: 649 PELHDSLLEIARKDAK 664 EL+ LLE A AK Sbjct: 961 -ELYQQLLEEAVAAAK 975 >gi|296169893|ref|ZP_06851505.1| transcription-repair coupling factor [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895449|gb|EFG75151.1| transcription-repair coupling factor [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 1201 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 124/377 (32%), Positives = 204/377 (54%), Gaps = 17/377 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F+ T Q +AI ++ DM + M R++ GDVG GKT +A+ A AV+ G Q ++ P Sbjct: 626 FTETVDQLTAITEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 685 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA QH + + V+ ++ A R +E +A G ++IGTH L Q + Sbjct: 686 TLLADQHLQTFTDRMAGFPVTVKGLSRFTDNAESRAVIEGLADGSVDVVIGTHRLLQTGV 745 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L LV+VDE+ RFGV+ + + T VL M+ATPIPRTL ++ G ++S I Sbjct: 746 RWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 805 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508 P R P+ T + P + +V L+ L + +++ ++ ++ + R +V Sbjct: 806 PPEERYPVLTYVGPQDD-KQVAAALRRELLRDGQVFYVHNRVSSIDRTAARIRELVPE-- 862 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 + + + HG+M + E + F N +L+ TT++E G+D+ +A+ +I+E A Sbjct: 863 -------ARVVVAHGQMPEERLERTVQGFWNREYDILVCTTIVETGLDISNANTLIVERA 915 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623 + FGL+QLHQLRGRVGR E LY H PL++ +Y RL+ + + G +A + Sbjct: 916 DTFGLSQLHQLRGRVGRSRERGYAYFLYPPHAPLTETAYDRLATIAQNNELGAGMAVALK 975 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R G +LG++QSG Sbjct: 976 DLEIRGAGNVLGVEQSG 992 >gi|254459943|ref|ZP_05073359.1| transcription-repair coupling factor [Rhodobacterales bacterium HTCC2083] gi|206676532|gb|EDZ41019.1| transcription-repair coupling factor [Rhodobacteraceae bacterium HTCC2083] Length = 1150 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 142/399 (35%), Positives = 220/399 (55%), Gaps = 23/399 (5%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q AI D+L DM M R++ GDVG GKT VA+ A A +G Q I+AP Sbjct: 594 PYQETDDQLGAIGDVLADMGSGQPMDRLVCGDVGFGKTEVAMRAAFIAAMSGVQVAIIAP 653 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QHY+ + + I V ++ + + +R+A G I++GTHAL + Sbjct: 654 TTLLARQHYKSFAERFRGFPIEVRPLSRFVTTKDAEETRKRMADGTVDIVVGTHALLAKN 713 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 ++ L L+I+DE+ FGV + +L T HVL +TATPIPRTL L+ G D+S I Sbjct: 714 TKFNNLGLLIIDEEQHFGVGHKERLKALRTDIHVLTLTATPIPRTLQLSLSGVRDLSIIG 773 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506 P R I+T ++ D V R + +L E G +++++ P+I + E +E Sbjct: 774 TPPVDRLAIRTY---VSEFDAVTLR-EALLREHYRGGQSFYVVPRILDLPE------IET 823 Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565 F L E S + HG+M+ + + M++F +G +L+ATT++E G+D+ A+ +I+ Sbjct: 824 F--LKEQLPELSYMVAHGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMIV 881 Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620 A+ FGLAQL+Q+RGRVGR + + L P L+ + RL VL + + GF + Sbjct: 882 HRADMFGLAQLYQIRGRVGRSKTRAYAYLTTKPRTKLTTTAEKRLRVLGSLDTLGAGFTL 941 Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 A +DL R G +LG +QSG + + EL+ S+LE A Sbjct: 942 ASQDLDIRGAGNLLGEEQSGQMRDV--GYELYQSMLEDA 978 >gi|255524039|ref|ZP_05391001.1| transcription-repair coupling factor [Clostridium carboxidivorans P7] gi|296186896|ref|ZP_06855297.1| transcription-repair coupling factor [Clostridium carboxidivorans P7] gi|255512326|gb|EET88604.1| transcription-repair coupling factor [Clostridium carboxidivorans P7] gi|296048610|gb|EFG88043.1| transcription-repair coupling factor [Clostridium carboxidivorans P7] Length = 1173 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 133/381 (34%), Positives = 218/381 (57%), Gaps = 23/381 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q ++I+DI DM M R+L GDVG GKT VA+ A AV G Q ++ P Sbjct: 625 PYEETPDQVTSIEDIKSDMESDKPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVALLVP 684 Query: 330 IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 ILAQQHY F+++++ + + +++I+ + ++ ++ + G+ I+IGTH + Q Sbjct: 685 TTILAQQHYNNFVQRFS-DFPVKIDMISRFRTTSQQKATMKALKAGEIDILIGTHRIIQK 743 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 +Q+ L L+IVDE+ RFGV + K+ + VL ++ATPIPRTL ++ +G DIS I Sbjct: 744 DVQFKDLGLLIVDEEQRFGVTHKEKIKKMKKNIDVLTLSATPIPRTLHMSLVGVRDISVI 803 Query: 449 TEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKE--SNFRSVV 504 P R P++T ++ N I + I R L+ G + Y++ ++E KE S +V Sbjct: 804 ETPPEERYPVQTYVVEYNEQLIRDAILR---ELNRGGQVYFVYNRVENIKEMASYMAKLV 860 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 + +A+ HG+M + + E+++ F +L+ATT+IE G+D+ + + +I Sbjct: 861 PE---------ARVAVAHGQMQERELENIIVDFMKNEYDILVATTIIETGMDIQNVNTMI 911 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFL 619 I +++ GL+QL+QLRGRVGR ++ C L Y L++ + RL +K+ TE GF Sbjct: 912 IYDSDKMGLSQLYQLRGRVGRTNRMAYCYLTYRKDKILTEVAEKRLKAIKDFTELGSGFK 971 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 IA +DL+ R G ++G Q G Sbjct: 972 IALKDLEIRGAGNMMGSSQHG 992 >gi|227504114|ref|ZP_03934163.1| transcription-repair coupling factor [Corynebacterium striatum ATCC 6940] gi|227199290|gb|EEI79338.1| transcription-repair coupling factor [Corynebacterium striatum ATCC 6940] Length = 1220 Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 135/431 (31%), Positives = 224/431 (51%), Gaps = 23/431 (5%) Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 +W + ++ A +AG++ L ++Q G + ++ N P+ T+ Q Sbjct: 593 DWKNTKKKARAAVREIAGELVELYAKRQASP--GHQFAPDTPWQAEMEDNFPYIETEDQM 650 Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338 AI + +DM M R++ GDVG GKT VA+ A AV+ G Q ++ P +LAQQH Sbjct: 651 LAIDAVKEDMESTVPMDRVVVGDVGYGKTEVAVRAAFKAVQDGMQVAVLVPTTLLAQQHA 710 Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 + ++ + +++++ ++ + +A G I+IGTH L Q + + L L+ Sbjct: 711 DTFRERMTGFPVNIQVLSRFTSTKDAKEIVSGLADGSVDIVIGTHRLLQTGVHWKNLGLI 770 Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458 +VDE+ RFGV+ + + + VL M+ATPIPRTL ++ G ++S I P R P+ Sbjct: 771 VVDEEQRFGVEHKEHIKALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPV 830 Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514 T + +I I R +L +G + ++I ++ EKK R +V Sbjct: 831 LTYVGAYEDKQIAAAIRR--ELLRDG-QTFFIHNKVSDIEKKARELRELVPE-------- 879 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 + I + HG+M++ E + F + +L+ TT++E G+D+ +A+ +I+ENA H GL+ Sbjct: 880 -ARIVVAHGQMNEEALEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLS 938 Query: 575 QLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629 QLHQLRGRVGR E LY L++ SY RL+ + D G +A +DL+ R Sbjct: 939 QLHQLRGRVGRSRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRG 998 Query: 630 EGEILGIKQSG 640 G +LG +QSG Sbjct: 999 AGNVLGAQQSG 1009 >gi|124023141|ref|YP_001017448.1| transcriptional-repair coupling factor [Prochlorococcus marinus str. MIT 9303] gi|123963427|gb|ABM78183.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str. MIT 9303] Length = 1193 Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 134/412 (32%), Positives = 221/412 (53%), Gaps = 22/412 (5%) Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317 +G ++ + P+ PT Q A+ D+ +DM M R++ GDVG GKT VA+ A+ A Sbjct: 608 DGPWQIELEESFPYEPTPDQVKAVVDVKRDMEAAQPMDRLVCGDVGFGKTEVAIRAIFKA 667 Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377 + +G Q ++AP +LAQQH+ + I V ++ + R+ L + G Sbjct: 668 ITSGRQIAMLAPTTVLAQQHWRTLSDRFAPYPIKVALLNRFRTSSERKSILNGLKEGTID 727 Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437 ++GTH L + + KL L++VDE+ RFGV Q+ K+ VL ++ATPIPRTL + Sbjct: 728 AVVGTHQLLSKNTTFQKLGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPIPRTLYM 787 Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EK 495 + G ++S IT P R+PIKT + + + V ++ L G + +++ P++E E Sbjct: 788 SLSGVREMSLITTPPPLRRPIKTHLAAFDE-EAVRSSIRQELDRGGQVFYVVPRVEGIED 846 Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555 S + ++ L + HG+M++ + ES M +F G L++ TT++E G+ Sbjct: 847 VASQLQQMLPDLKLL---------VAHGQMAEGELESSMVAFNAGEADLMLCTTIVESGL 897 Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLK 612 D+ + I+IE+A FGLAQL+QLRGRVGR + + L++P LS + RL ++ Sbjct: 898 DIPRVNTILIEDAHKFGLAQLYQLRGRVGR-SGVQAHAWLFYPGDASLSDAARQRLRAIQ 956 Query: 613 ---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEI 658 G+ +A D++ R G +LG++QSG + F + L +SL EI Sbjct: 957 EFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEI 1008 >gi|289555197|ref|ZP_06444407.1| LOW QUALITY PROTEIN: transcription-repair coupling factor mfd [Mycobacterium tuberculosis KZN 605] gi|289439829|gb|EFD22322.1| LOW QUALITY PROTEIN: transcription-repair coupling factor mfd [Mycobacterium tuberculosis KZN 605] Length = 824 Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 125/375 (33%), Positives = 206/375 (54%), Gaps = 13/375 (3%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F+ T Q +AI+++ DM + M R++ GDVG GKT +A+ A AV+ G Q ++ P Sbjct: 237 FTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 296 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA QH + + + ++ ++ A R ++ +A G I+IGTH L Q + Sbjct: 297 TLLADQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGV 356 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L LV+VDE+ RFGV+ + + T VL M+ATPIPRTL ++ G ++S I Sbjct: 357 RWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 416 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P R P+ T + P + ++ L+ L +A+++ + S+ + R L Sbjct: 417 PPEERYPVLTYVGPHDD-KQIAAALRRELLRDGQAFYV-----HNRVSSIDAAAARVREL 470 Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 + + + HG+M + E+ + F N +L+ TT++E G+D+ +A+ +I+E A+ Sbjct: 471 VPE--ARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADT 528 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625 FGL+QLHQLRGRVGR E LY P PL++ +Y RL+ + + G +A +DL Sbjct: 529 FGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDL 588 Query: 626 KQRKEGEILGIKQSG 640 + R G +LGI+QSG Sbjct: 589 EIRGAGNVLGIEQSG 603 >gi|41407085|ref|NP_959921.1| hypothetical protein MAP0987 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395436|gb|AAS03304.1| Mfd [Mycobacterium avium subsp. paratuberculosis K-10] Length = 1221 Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 126/375 (33%), Positives = 201/375 (53%), Gaps = 11/375 (2%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 ++ T Q +AI ++ DM + M R++ GDVG GKT +A+ A AV+ G Q ++ P Sbjct: 644 YTETVDQLTAITEVKSDMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 703 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA QH + + V+ ++ A R +E +A G I+IGTH L Q + Sbjct: 704 TLLADQHLQTFTDRMAGFPVTVKGLSRFTDAAESRAVIEGLADGSVDIVIGTHRLLQTGV 763 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L LV+VDE+ RFGV+ + + T VL M+ATPIPRTL ++ G ++S I Sbjct: 764 RWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 823 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P R P+ T + P + +V L+ L +A+++ + S+ R L Sbjct: 824 PPEERYPVLTYVGPHDD-KQVAAALRRELLRDGQAFYV-----HNRVSSIDRAAARVREL 877 Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 + + HG+M + E + F N +L+ TT++E G+D+ +A+ +I+E A+ Sbjct: 878 VPEARVVVVVAHGQMPEERLERTVQGFWNREYDILVCTTIVETGLDISNANTLIVERADT 937 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDL 625 FGL+QLHQLRGRVGR E LY H PL++ +Y RL+ + + G +A +DL Sbjct: 938 FGLSQLHQLRGRVGRSRERGYAYFLYPPHAPLTETAYDRLATIAQNNELGAGMAVALKDL 997 Query: 626 KQRKEGEILGIKQSG 640 + R G +LG++QSG Sbjct: 998 EIRGAGNVLGVEQSG 1012 >gi|215429881|ref|ZP_03427800.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis EAS054] gi|260200049|ref|ZP_05767540.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis T46] gi|289442441|ref|ZP_06432185.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis T46] gi|289753081|ref|ZP_06512459.1| transcription-repair coupling factor Mfd [Mycobacterium tuberculosis EAS054] gi|289415360|gb|EFD12600.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis T46] gi|289693668|gb|EFD61097.1| transcription-repair coupling factor Mfd [Mycobacterium tuberculosis EAS054] Length = 1234 Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 125/375 (33%), Positives = 206/375 (54%), Gaps = 13/375 (3%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F+ T Q +AI+++ DM + M R++ GDVG GKT +A+ A AV+ G Q ++ P Sbjct: 647 FTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 706 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA QH + + + ++ ++ A R ++ +A G I+IGTH L Q + Sbjct: 707 TLLADQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGV 766 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L LV+VDE+ RFGV+ + + T VL M+ATPIPRTL ++ G ++S I Sbjct: 767 RWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 826 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P R P+ T + P + ++ L+ L +A+++ + S+ + R L Sbjct: 827 PPEERYPVLTYVGPHDD-KQIAAALRRELLRDGQAFYV-----HNRVSSIDAAAARVREL 880 Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 + + + HG+M + E+ + F N +L+ TT++E G+D+ +A+ +I+E A+ Sbjct: 881 VPE--ARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADT 938 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625 FGL+QLHQLRGRVGR E LY P PL++ +Y RL+ + + G +A +DL Sbjct: 939 FGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDL 998 Query: 626 KQRKEGEILGIKQSG 640 + R G +LGI+QSG Sbjct: 999 EIRGAGNVLGIEQSG 1013 >gi|310639514|ref|YP_003944272.1| transcription-repair coupling factor [Paenibacillus polymyxa SC2] gi|309244464|gb|ADO54031.1| transcription-repair coupling factor [Paenibacillus polymyxa SC2] Length = 1175 Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 128/378 (33%), Positives = 209/378 (55%), Gaps = 17/378 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q AI++I +DM Q M R+L GDVG GKT VA+ A + G Q ++ P Sbjct: 610 PYDETRDQVRAIEEIKKDMEQSRPMDRLLCGDVGYGKTEVAIRAAFKSAIEGKQVAVLVP 669 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHYE ++ +++++ + + + + + G I+IGTH L Sbjct: 670 TTILAQQHYETFRERFSGYPFNIQVLSRFRSRKEQNETTKGVRQGTVDIVIGTHRLLSQD 729 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 + + L L+IVDE+ RFGV + KL + T VL +TATPIPRTL ++ LG D+S I Sbjct: 730 LVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIE 789 Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 P R P++T ++ ++ + E IER ++ G + Y++ +++ + + Sbjct: 790 TPPENRFPVQTYVVEHSQTLVREAIER---EMARGGQVYYLYNRVQ-----GIQEMAAEI 841 Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567 N+L + + + HG+MS+ + E + F +G +L++T++IE G+D+ + + +I+ + Sbjct: 842 NALVP--DAKVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHD 899 Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622 A+ GL+QL+QLRGRVGR I+ Y L++ + RL +K TE GF IA Sbjct: 900 ADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAM 959 Query: 623 EDLKQRKEGEILGIKQSG 640 DL R G +LG +Q G Sbjct: 960 RDLSIRGAGNLLGAEQHG 977 >gi|167763421|ref|ZP_02435548.1| hypothetical protein BACSTE_01795 [Bacteroides stercoris ATCC 43183] gi|167698715|gb|EDS15294.1| hypothetical protein BACSTE_01795 [Bacteroides stercoris ATCC 43183] Length = 1128 Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 135/409 (33%), Positives = 218/409 (53%), Gaps = 17/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + Q ++E G + + + +++ + + T Q A D+ DM M R++ Sbjct: 531 LIKLYSQRREEKGFQYSPDSFLQRELEASFIYEDTPDQSKATADVKADMESARPMDRLVC 590 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A AV Q ++ P +LA QH++ K+ + VE ++ Sbjct: 591 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFKERLKGLPCRVEYLSRAR 650 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 A + ++ +A G+ +I+IGTH + +++ L L+I+DE+ +FGV + KL Q Sbjct: 651 TAAQTKSVVKGLAGGEVNILIGTHRILGKDVKFKDLGLLIIDEEQKFGVSVKEKLRQLKV 710 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478 L +TATPIPRTL + +G D+S I P R PI+T + DE+I + + Sbjct: 711 NVDTLTLTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFG--DEIITDAINFE 768 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538 +S + +++ +I E ++++ER + I HG+M + E ++ F Sbjct: 769 MSRNGQVFFVNNRISNLSE--LKAMIERNIP-----DCRVCIGHGQMEPAELEKIILDFV 821 Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 N +L+ATT+IE GID+ +A+ III A++FGL+ LHQ+RGRVGR + + C LL P Sbjct: 822 NYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-AP 880 Query: 599 PLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 PLS + RL ++N D G IA +DL R G +LG +QSG Sbjct: 881 PLSSLTLEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 929 >gi|329915573|ref|ZP_08276288.1| Transcription-repair coupling factor [Oxalobacteraceae bacterium IMCC9480] gi|327544874|gb|EGF30242.1| Transcription-repair coupling factor [Oxalobacteraceae bacterium IMCC9480] Length = 1120 Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 149/423 (35%), Positives = 225/423 (53%), Gaps = 19/423 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q +AI ++ DM+ M R++ GDVG GKT VAL A AV G Q I+AP Sbjct: 576 FEETVDQAAAINAVIGDMTSGKPMDRLICGDVGFGKTEVALRATFVAVLGGKQVAILAPT 635 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA+QH + + + + ++ A++ +A G I+IGTH L D + Sbjct: 636 TLLAEQHAQTFADRFADWPVKIAELSRFRSGKEINTAMKGMADGTLDIVIGTHKLLSDDV 695 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ +L LVI+DE+HRFGV+Q+ L VL +TATPIPRTL + G D S I Sbjct: 696 KFERLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSIIAT 755 Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P R IKT + + + VI E L G + Y++ +++ + N + ++E Sbjct: 756 APQKRLAIKTFV--RSEGESVIREACLRELKRGGQVYFLHNEVDTIE--NRKQMLEAL-- 809 Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569 L E + I + HG+M + + E VM F +L+ TT+IE GIDV A+ II+ A+ Sbjct: 810 LPE---ARIGVAHGQMHERELEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRAD 866 Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEED 624 FGLAQLHQLRGRVGR + LL H L+K + RL ++ E+ GF +A D Sbjct: 867 KFGLAQLHQLRGRVGRSHHQAYAYLLVHDVAGLTKLAQRRLDAIQQMEELGSGFYLAMHD 926 Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684 L+ R GE+LG QSG + Q ++ +L +A + ++ ++PDL + + I Sbjct: 927 LEIRGAGEVLGDNQSGEMTEIGFQ--MYSDMLNLAVRSLRN--GKEPDLAAPLASTTEIN 982 Query: 685 LYL 687 L++ Sbjct: 983 LHV 985 >gi|56418583|ref|YP_145901.1| transcription-repair coupling factor [Geobacillus kaustophilus HTA426] gi|56378425|dbj|BAD74333.1| transcription-repair coupling factor [Geobacillus kaustophilus HTA426] Length = 1177 Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 134/381 (35%), Positives = 207/381 (54%), Gaps = 23/381 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q +I++I +DM M R+L GDVG GKT VAL A A+ G Q + P Sbjct: 621 PYQETEDQLRSIEEIKRDMESDKPMDRLLCGDVGYGKTEVALRAAFKAIMDGKQVAFLVP 680 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 ILAQQHYE +++ Q I V ++ + + + ++ + G ++IGTH L Sbjct: 681 TTILAQQHYETVRERFQGFPIKVGLLNRFRTKKQQAETIKGLKDGTIDMVIGTHRLLSKD 740 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 +++ L L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ +G D+S I Sbjct: 741 VEFKDLGLLIIDEEQRFGVAHKEKIKQLKANIDVLTLTATPIPRTLHMSMIGVRDLSIIE 800 Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEE---KKESNFRSVV 504 P R P++T ++ + E IER L+ + +++ IE+ K E + V Sbjct: 801 TPPENRFPVQTYVMEYTPELVKEAIER---ELARDGQVFFLYNHIEDIDLKAEEIAQLVP 857 Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564 E + + +HGRMS+ + ES + +F G +L+ TT+IE GID+ + + +I Sbjct: 858 E----------ARVTYVHGRMSETELESTILAFLEGQYDVLVTTTIIETGIDIPNVNTLI 907 Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFL 619 + +A+ GL+QL+QLRGRVGR ++ Y L++ + RL +K TE GF Sbjct: 908 VYDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLNEAAEKRLQAIKEFTELGSGFK 967 Query: 620 IAEEDLKQRKEGEILGIKQSG 640 IA DL R G ILG +Q G Sbjct: 968 IAMRDLSIRGAGNILGAEQHG 988 >gi|171058689|ref|YP_001791038.1| transcription-repair coupling factor [Leptothrix cholodnii SP-6] gi|170776134|gb|ACB34273.1| transcription-repair coupling factor [Leptothrix cholodnii SP-6] Length = 1155 Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 146/415 (35%), Positives = 215/415 (51%), Gaps = 21/415 (5%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q +AI ++QDM M R++ GDVG GKT VAL A AV G Q ++AP Sbjct: 600 FEETADQNAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVTGGKQVALLAPT 659 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA+QHY+ + + V I+ + L+ +A G I++GTH L Sbjct: 660 TLLAEQHYQTLADRFAQWPVKVAEISRFRSTKEVKATLDGLAAGTVDIVVGTHKLLSPDS 719 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L L+I+DE+HRFGV+ + ++ VL +TATPIPRTL + G D+S I Sbjct: 720 KFKNLGLLIIDEEHRFGVRHKEQMKALRAEVDVLTLTATPIPRTLGMALEGLRDLSVIAT 779 Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P R IKT + N I E + L G + Y++ +++ ++ R Sbjct: 780 APQRRLAIKTFVR--NETGGTIREAVMRELKRGGQVYFLHNEVD--------TIENRRQK 829 Query: 510 LHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 L E + IA+ HG+M + + E VM F +L+ +T+IE GIDV A+ I+I A Sbjct: 830 LEEMLPEARIAVAHGQMPERELERVMRDFVAQRHNVLLCSTIIETGIDVPSANTIVISRA 889 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEE 623 + FGLAQLHQLRGRVGR + LL L+K + RL ++ E+ GF +A Sbjct: 890 DKFGLAQLHQLRGRVGRSHHQAYAYLLVPDTEGLTKQAQQRLDAIQAMEELGSGFYLAMH 949 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678 DL+ R GE+LG QSG + +L++ +L A + K ++PDL S G Sbjct: 950 DLEIRGAGEVLGDNQSG--NMMEVGFQLYNEMLAEAVRAMK--AGEEPDLLSPTG 1000 >gi|33861396|ref|NP_892957.1| transcriptional-repair coupling factor [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633973|emb|CAE19298.1| Transcriptional-repair coupling factor [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 1171 Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 131/425 (30%), Positives = 231/425 (54%), Gaps = 18/425 (4%) Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317 +G +++ + P+ T Q +A+K++ DM M R++ GDVG GKT VA+ A+ A Sbjct: 600 DGPWQKELEESFPYQATPDQITAVKEVKIDMESDKPMDRLVCGDVGFGKTEVAVRAIFKA 659 Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377 + +G Q +++AP ILAQQH+ I V ++ ++ + + + Sbjct: 660 ITSGKQVILLAPTTILAQQHWRTFYNRFSPYPIKVSLLNRFKTNTEKKDIYNGLKNNKID 719 Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437 +++ TH + I+ L L+++DE+ RFGV+Q+ K+ T VL ++ATPIPRTL + Sbjct: 720 LVVATHQILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKNIKTNIDVLTLSATPIPRTLYM 779 Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497 + G +S + P R+ IKT + I+ +D + + L G + +++ P+I Sbjct: 780 SLSGLRQMSLLNTPPPSRRSIKTYLSEID-MDVIRTAISQELDRGGQIFYVLPRI----- 833 Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557 S+ V + ++ + +A HG+M++ID E+ M +F NG L+I TT+IE G+D+ Sbjct: 834 SDIDQAVNKLKNMFKDLKYIVA--HGQMNEIDLENAMIAFNNGEVDLMICTTIIESGLDI 891 Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK---NSYTRLSVLKNT 614 + I+IE++ FGL+QL+QLRGRVGR I + L++P ++K S RL +K+ Sbjct: 892 PRVNTIVIEDSHKFGLSQLYQLRGRVGRS-GIQAHAWLFYPNINKINEASKQRLKAIKDF 950 Query: 615 ED---GFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILT 668 + G+ +A +D++ R G +LG +QSG + + LH+++ EI ++ + Sbjct: 951 SELGSGYQLAMKDMEIRGVGSLLGEEQSGKVNAIGYDLYIEMLHEAISEINGQEVPEVND 1010 Query: 669 QDPDL 673 DL Sbjct: 1011 TQVDL 1015 >gi|169628250|ref|YP_001701899.1| transcription-repair coupling factor [Mycobacterium abscessus ATCC 19977] gi|169240217|emb|CAM61245.1| Probable transcription-repair coupling factor (TrcF) [Mycobacterium abscessus] Length = 1216 Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 130/377 (34%), Positives = 203/377 (53%), Gaps = 17/377 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F T Q +AI ++ DM + M R++ GDVG GKT +A+ A AV+ G Q ++ P Sbjct: 647 FVETVDQLTAITEVKSDMEKPVPMDRVVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 706 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA QH + T + V ++ + +E +A G I+IGTH L Q + Sbjct: 707 TLLADQHLQTFTNRTAGFPVKVAGLSRFTDPLTSKLVVEGMADGSVDIVIGTHRLLQTGV 766 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L LVIVDE+ RFGV+ + + T VL M+ATPIPRTL ++ G ++S I Sbjct: 767 RWKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 826 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508 P R P+ T + P + +V L+ L +A+++ ++ +K + R +V Sbjct: 827 PPEERYPVLTYVGPHDD-KQVAAALRRELLRDGQAFYVHNRVSTIDKAAARIRDLVPE-- 883 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 + + + HG+M + E + F N +L+ TT+IE G+D+ +A+ +I+E A Sbjct: 884 -------ARVVVAHGQMPEEMLERTVQGFWNREYDILVCTTIIETGLDISNANTLIVERA 936 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623 + FGL+QLHQLRGRVGR E LY P PL++ +Y RLS + D G +A + Sbjct: 937 DIFGLSQLHQLRGRVGRSRERGYAYFLYSPEVPLTETAYDRLSTIAQNNDLGAGMAVAMK 996 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R G +LG++QSG Sbjct: 997 DLEIRGAGNVLGVEQSG 1013 >gi|260204238|ref|ZP_05771729.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis K85] gi|289573660|ref|ZP_06453887.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis K85] gi|289538091|gb|EFD42669.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis K85] Length = 1234 Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 125/375 (33%), Positives = 206/375 (54%), Gaps = 13/375 (3%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F+ T Q +AI+++ DM + M R++ GDVG GKT +A+ A AV+ G Q ++ P Sbjct: 647 FTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 706 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA QH + + + ++ ++ A R ++ +A G I+IGTH L Q + Sbjct: 707 TLLADQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGV 766 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L LV+VDE+ RFGV+ + + T VL M+ATPIPRTL ++ G ++S I Sbjct: 767 RWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 826 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P R P+ T + P + ++ L+ L +A+++ + S+ + R L Sbjct: 827 PPEERYPVLTYVGPHDD-KQIAAALRRELLRDGQAFYV-----HNRVSSIDAAAARVREL 880 Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 + + + HG+M + E+ + F N +L+ TT++E G+D+ +A+ +I+E A+ Sbjct: 881 VPE--ARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADT 938 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625 FGL+QLHQLRGRVGR E LY P PL++ +Y RL+ + + G +A +DL Sbjct: 939 FGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDL 998 Query: 626 KQRKEGEILGIKQSG 640 + R G +LGI+QSG Sbjct: 999 EIRGAGNVLGIEQSG 1013 >gi|323691738|ref|ZP_08105998.1| transcription-repair coupling factor [Clostridium symbiosum WAL-14673] gi|323504216|gb|EGB20018.1| transcription-repair coupling factor [Clostridium symbiosum WAL-14673] Length = 1179 Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 129/371 (34%), Positives = 207/371 (55%), Gaps = 15/371 (4%) Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 Q AI+ +DM K M R++ GDVG GKT +AL A A++ G Q V + P ILAQ Sbjct: 632 DQLEAIESTKRDMESKKIMDRLICGDVGYGKTEIALRAAFKAIQEGKQVVYLVPTTILAQ 691 Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395 QHY + ++ + V++++ +++ LE + G ++IGTH + + + L Sbjct: 692 QHYNTFVQRMKDFPVRVDMMSRFRTATEQKRTLEDLKKGFVDVLIGTHRVLSKDVVFKNL 751 Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455 L+I+DE+ RFGV + K+ Q VL +TATPIPRTL ++ +G D+S + E P R Sbjct: 752 GLLIIDEEQRFGVAHKEKIKQLKENVDVLTLTATPIPRTLHMSLIGIRDMSVLEEPPVDR 811 Query: 456 KPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514 PI+T ++ N DE++ E + L+ G + Y++ ++ +N + +L Sbjct: 812 LPIQTYVMEYN--DEMVREAIHRELARGGQVYYVYNRV-----NNIDEITNHVAALVPE- 863 Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 +++ HG+M + + E +M F NG +L++TT+IE G+D+ +A+ III +A+ GL+ Sbjct: 864 -ANVTFAHGQMHEHELERIMLDFVNGDIDVLVSTTIIETGLDIPNANTIIIHDADRLGLS 922 Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629 QL+Q+RGRVGR S L+Y L + + RL ++ TE G IA DL+ R Sbjct: 923 QLYQIRGRVGRSNRTSYAFLMYRRDKLLREEAEKRLQAIREFTELGSGIKIAMRDLELRG 982 Query: 630 EGEILGIKQSG 640 G ILG +Q G Sbjct: 983 AGNILGAEQHG 993 >gi|288574800|ref|ZP_06393157.1| transcription-repair coupling factor [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570541|gb|EFC92098.1| transcription-repair coupling factor [Dethiosulfovibrio peptidovorans DSM 11002] Length = 1014 Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 129/397 (32%), Positives = 212/397 (53%), Gaps = 19/397 (4%) Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311 G + +G+ ++ R+ P T Q AI D+ +DM M R++ GDVG GKT VAL Sbjct: 467 GHAFSPDGEAMEEFERSFPHEETIDQLKAISDVKKDMESPRPMDRLVVGDVGYGKTEVAL 526 Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371 A+ A G Q +++ P +LAQQHY + + VE+++ + Q + + L + Sbjct: 527 RAVFKAAMDGFQVLVLVPTTVLAQQHYMTFRSRMGPFPLKVELLSRFVSQRRQNEILTGL 586 Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431 A G ++IGTH L Q+ ++ +L L+IVDE+HRFGV + + + + VL ++ATPI Sbjct: 587 ADGSVDVVIGTHRLLQNDLKIRRLGLIIVDEEHRFGVAHKERFRKLRSGVDVLTLSATPI 646 Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER--LKVVLSEGKKAYWIC 489 PRT + G D+S I E P G +P +I D+ + R L ++ G + Y + Sbjct: 647 PRTFSMAMKGMRDVS-IIETPPGNRP--AIITVTGAWDDGLVRKALAREMARGGQVYMLH 703 Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548 ++ ++ ER + F +A HGRM + + E M +F +G +L+ T Sbjct: 704 NRVG--------TIEERAGWVKSRFPDVRVAFAHGRMRENELEETMMAFYDGEIDILVCT 755 Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYT 606 T++E G+DV A+ ++++++ GLAQ+HQLRGRVGR ++ + LY L ++ Sbjct: 756 TIVESGLDVGRANTLVVDDSRLLGLAQMHQLRGRVGRRDDTAYAFFLYPSDCVLPHSTAE 815 Query: 607 RLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640 RL + G+ +A+EDL R G++LG+ Q G Sbjct: 816 RLDAIGRLSFQGAGYELAKEDLHIRGGGDLLGMSQHG 852 >gi|15608160|ref|NP_215536.1| transcription-repair coupling factor Mfd (TRCF) [Mycobacterium tuberculosis H37Rv] gi|15840448|ref|NP_335485.1| transcription-repair coupling factor [Mycobacterium tuberculosis CDC1551] gi|31792211|ref|NP_854704.1| transcription-repair coupling factor Mfd (TRCF) [Mycobacterium bovis AF2122/97] gi|121636949|ref|YP_977172.1| putative transcription-repair coupling factor mfd [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660802|ref|YP_001282325.1| transcription-repair coupling factor [Mycobacterium tuberculosis H37Ra] gi|148822229|ref|YP_001286983.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis F11] gi|167968120|ref|ZP_02550397.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis H37Ra] gi|215402835|ref|ZP_03415016.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis 02_1987] gi|224989421|ref|YP_002644108.1| putative transcription-repair coupling factor [Mycobacterium bovis BCG str. Tokyo 172] gi|253799950|ref|YP_003032951.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis KZN 1435] gi|254363936|ref|ZP_04979982.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis str. Haarlem] gi|260185931|ref|ZP_05763405.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis CPHL_A] gi|289446601|ref|ZP_06436345.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis CPHL_A] gi|289744756|ref|ZP_06504134.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis 02_1987] gi|297633546|ref|ZP_06951326.1| transcription-repair coupling factor [Mycobacterium tuberculosis KZN 4207] gi|297730531|ref|ZP_06959649.1| transcription-repair coupling factor [Mycobacterium tuberculosis KZN R506] gi|306775155|ref|ZP_07413492.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu001] gi|306781930|ref|ZP_07420267.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu002] gi|306783715|ref|ZP_07422037.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu003] gi|306788070|ref|ZP_07426392.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu004] gi|306792403|ref|ZP_07430705.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu005] gi|306796806|ref|ZP_07435108.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu006] gi|306802692|ref|ZP_07439360.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu008] gi|306806871|ref|ZP_07443539.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu007] gi|306967072|ref|ZP_07479733.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu009] gi|306971262|ref|ZP_07483923.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu010] gi|307078991|ref|ZP_07488161.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu011] gi|307083551|ref|ZP_07492664.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu012] gi|313657860|ref|ZP_07814740.1| transcription-repair coupling factor [Mycobacterium tuberculosis KZN V2475] gi|54037787|sp|P64327|MFD_MYCBO RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|54041091|sp|P64326|MFD_MYCTU RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|3261715|emb|CAB06859.1| PROBABLE TRANSCRIPTION-REPAIR COUPLING FACTOR MFD (TRCF) [Mycobacterium tuberculosis H37Rv] gi|13880619|gb|AAK45299.1| transcription-repair coupling factor [Mycobacterium tuberculosis CDC1551] gi|31617799|emb|CAD93908.1| PROBABLE TRANSCRIPTION-REPAIR COUPLING FACTOR MFD (TRCF) [Mycobacterium bovis AF2122/97] gi|121492596|emb|CAL71064.1| Probable transcription-repair coupling factor mfd [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134149450|gb|EBA41495.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis str. Haarlem] gi|148504954|gb|ABQ72763.1| transcription-repair coupling factor [Mycobacterium tuberculosis H37Ra] gi|148720756|gb|ABR05381.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis F11] gi|224772534|dbj|BAH25340.1| putative transcription-repair coupling factor [Mycobacterium bovis BCG str. Tokyo 172] gi|253321453|gb|ACT26056.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis KZN 1435] gi|289419559|gb|EFD16760.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis CPHL_A] gi|289685284|gb|EFD52772.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis 02_1987] gi|308216305|gb|EFO75704.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu001] gi|308325321|gb|EFP14172.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu002] gi|308331498|gb|EFP20349.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu003] gi|308335304|gb|EFP24155.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu004] gi|308339112|gb|EFP27963.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu005] gi|308342784|gb|EFP31635.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu006] gi|308346693|gb|EFP35544.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu007] gi|308350608|gb|EFP39459.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu008] gi|308355241|gb|EFP44092.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu009] gi|308359196|gb|EFP48047.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu010] gi|308363098|gb|EFP51949.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu011] gi|308366762|gb|EFP55613.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu012] gi|323720520|gb|EGB29602.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis CDC1551A] gi|326904753|gb|EGE51686.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis W-148] gi|328459693|gb|AEB05116.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis KZN 4207] Length = 1234 Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 125/375 (33%), Positives = 206/375 (54%), Gaps = 13/375 (3%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F+ T Q +AI+++ DM + M R++ GDVG GKT +A+ A AV+ G Q ++ P Sbjct: 647 FTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 706 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA QH + + + ++ ++ A R ++ +A G I+IGTH L Q + Sbjct: 707 TLLADQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGV 766 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L LV+VDE+ RFGV+ + + T VL M+ATPIPRTL ++ G ++S I Sbjct: 767 RWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 826 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P R P+ T + P + ++ L+ L +A+++ + S+ + R L Sbjct: 827 PPEERYPVLTYVGPHDD-KQIAAALRRELLRDGQAFYV-----HNRVSSIDAAAARVREL 880 Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 + + + HG+M + E+ + F N +L+ TT++E G+D+ +A+ +I+E A+ Sbjct: 881 VPE--ARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADT 938 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625 FGL+QLHQLRGRVGR E LY P PL++ +Y RL+ + + G +A +DL Sbjct: 939 FGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDL 998 Query: 626 KQRKEGEILGIKQSG 640 + R G +LGI+QSG Sbjct: 999 EIRGAGNVLGIEQSG 1013 >gi|215410623|ref|ZP_03419431.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis 94_M4241A] gi|298524516|ref|ZP_07011925.1| transcription-repair coupling factor [Mycobacterium tuberculosis 94_M4241A] gi|298494310|gb|EFI29604.1| transcription-repair coupling factor [Mycobacterium tuberculosis 94_M4241A] Length = 1234 Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 125/375 (33%), Positives = 206/375 (54%), Gaps = 13/375 (3%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F+ T Q +AI+++ DM + M R++ GDVG GKT +A+ A AV+ G Q ++ P Sbjct: 647 FTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 706 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA QH + + + ++ ++ A R ++ +A G I+IGTH L Q + Sbjct: 707 TLLADQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGV 766 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L LV+VDE+ RFGV+ + + T VL M+ATPIPRTL ++ G ++S I Sbjct: 767 RWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 826 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P R P+ T + P + ++ L+ L +A+++ + S+ + R L Sbjct: 827 PPEERYPVLTYVGPHDD-KQIAAALRRELLRDGQAFYV-----HNRVSSIDAAAARVREL 880 Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 + + + HG+M + E+ + F N +L+ TT++E G+D+ +A+ +I+E A+ Sbjct: 881 VPE--ARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADT 938 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625 FGL+QLHQLRGRVGR E LY P PL++ +Y RL+ + + G +A +DL Sbjct: 939 FGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDL 998 Query: 626 KQRKEGEILGIKQSG 640 + R G +LGI+QSG Sbjct: 999 EIRGAGNVLGIEQSG 1013 >gi|118471657|ref|YP_889663.1| transcription-repair coupling factor [Mycobacterium smegmatis str. MC2 155] gi|118172944|gb|ABK73840.1| transcription-repair coupling factor [Mycobacterium smegmatis str. MC2 155] Length = 1215 Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 125/377 (33%), Positives = 205/377 (54%), Gaps = 17/377 (4%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F+ T Q +AI+++ DM + M R++ GDVG GKT +A+ A AV+ G Q ++ P Sbjct: 641 FTETIDQLTAIQEVKSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 700 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA QH + + V+ ++ A R +E + G ++IGTH L Q + Sbjct: 701 TLLADQHLQTFTNRMAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGV 760 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 + L L+IVDE+ RFGV+ + + T VL M+ATPIPRTL ++ G ++S I Sbjct: 761 TWKDLGLIIVDEEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 820 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508 P R P+ T + P + +V L+ L +A++I ++ ++ + R +V Sbjct: 821 PPEERYPVLTYVGPHDD-KQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPE-- 877 Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 + + + HG+M++ E ++ F N +L+ TT++E G+D+ +A+ +I+E A Sbjct: 878 -------ARVVVAHGQMNEETLEKTVEGFWNREYDILVCTTIVETGLDISNANTLIVERA 930 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623 + FGL+QLHQLRGRVGR E LY P PL++ +Y RL+ + + G +A + Sbjct: 931 DTFGLSQLHQLRGRVGRSRERGYAYFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMK 990 Query: 624 DLKQRKEGEILGIKQSG 640 DL+ R G +LG +QSG Sbjct: 991 DLEIRGAGNVLGAEQSG 1007 >gi|218752691|ref|ZP_03531487.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis GM 1503] gi|289761156|ref|ZP_06520534.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis GM 1503] gi|289708662|gb|EFD72678.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis GM 1503] Length = 1234 Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 125/375 (33%), Positives = 206/375 (54%), Gaps = 13/375 (3%) Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330 F+ T Q +AI+++ DM + M R++ GDVG GKT +A+ A AV+ G Q ++ P Sbjct: 647 FTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 706 Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390 +LA QH + + + ++ ++ A R ++ +A G I+IGTH L Q + Sbjct: 707 TLLADQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGV 766 Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450 ++ L LV+VDE+ RFGV+ + + T VL M+ATPIPRTL ++ G ++S I Sbjct: 767 RWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 826 Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510 P R P+ T + P + ++ L+ L +A+++ + S+ + R L Sbjct: 827 PPEERYPVLTYVGPHDD-KQIAAALRRELLRDGQAFYV-----HNRVSSIDAAAARVREL 880 Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570 + + + HG+M + E+ + F N +L+ TT++E G+D+ +A+ +I+E A+ Sbjct: 881 VPE--ARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADT 938 Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625 FGL+QLHQLRGRVGR E LY P PL++ +Y RL+ + + G +A +DL Sbjct: 939 FGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDL 998 Query: 626 KQRKEGEILGIKQSG 640 + R G +LGI+QSG Sbjct: 999 EIRGAGNVLGIEQSG 1013 >gi|239833942|ref|ZP_04682270.1| transcription-repair coupling factor [Ochrobactrum intermedium LMG 3301] gi|239822005|gb|EEQ93574.1| transcription-repair coupling factor [Ochrobactrum intermedium LMG 3301] Length = 1171 Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 141/422 (33%), Positives = 232/422 (54%), Gaps = 35/422 (8%) Query: 234 LAGQIALLLMRKQFKKEIGIPINV--EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291 +AGQ+ + +Q + G P+ +G A+ R P+ T Q +AI+ + D++ Sbjct: 589 IAGQLIQIAAERQMR---GAPVMTPPDGLYAEFAAR-FPYDETDDQLTAIESVADDLAAG 644 Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351 M R++ GDVG GKT VAL A A +G Q ++ P +L++QH++ K I Sbjct: 645 KPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSKRFHGLPIN 704 Query: 352 V---EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408 V + G A +K LE G I++GTHAL +SI++ L L+I+DE+ FGV Sbjct: 705 VAHASRLVGTKELAAAKKGLE---DGTVDIVVGTHALLGNSIKFKNLGLLIIDEEQHFGV 761 Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467 + + +L + + HVL ++ATPIPRTL L G ++S IT P R ++T + P + Sbjct: 762 KHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPL 821 Query: 468 -IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRM 525 I E + R + G +++++CP+I + E +E F L H +A+ HG+M Sbjct: 822 VIRETLLRERY---RGGQSFYVCPRISDLGE------IEEF--LKTHVPELKVAVAHGQM 870 Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585 + + +M++F +G +L++TT++E G+D+ A+ +I+ A+ FGLAQL+QLRGRVGR Sbjct: 871 APGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGLAQLYQLRGRVGR 930 Query: 586 GEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQ 638 ++ L+ P L++ + RL VL++ + GF +A D+ R G +LG +Q Sbjct: 931 SKQ--RAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDIRGAGNLLGEEQ 988 Query: 639 SG 640 SG Sbjct: 989 SG 990 >gi|299141509|ref|ZP_07034645.1| transcription-repair coupling factor [Prevotella oris C735] gi|298576845|gb|EFI48715.1| transcription-repair coupling factor [Prevotella oris C735] Length = 1139 Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 133/409 (32%), Positives = 214/409 (52%), Gaps = 17/409 (4%) Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299 L+ + Q + E G + + + ++ + + T Q A +D+ DM + M R++ Sbjct: 542 LIKLYAQRRHEKGYAFSGDSYLQHELEASFLYEDTPDQSKATQDVKADMESQRPMDRLVC 601 Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359 GDVG GKT VA+ A A Q ++ P +LA QHY+ K + + V+ ++ Sbjct: 602 GDVGFGKTEVAVRAAFKAACDSKQVAVLVPTTVLAYQHYQTFKNRLKGMPVRVDYLSRAR 661 Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419 ++ L + G+ I+IGTH L S++++ L L+I+DE+ +FGV + KL + T Sbjct: 662 SAKQTKQVLTDLEDGKIDILIGTHKLLGKSVKWHDLGLLIIDEEQKFGVSTKEKLRKMKT 721 Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478 L M+ATPIPRTL + +G D+S I P R PI T + + EVI + + Sbjct: 722 NVDTLTMSATPIPRTLQFSLMGARDMSIIRTPPPNRYPIHTELATFSH--EVIADAINFE 779 Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537 +S + Y++ +I + E N +H++ +AI HG+M E V+ F Sbjct: 780 MSRNGQVYFVHDRIN--------GLQEIANLIHKYVPDCRVAIGHGQMPPDKLEKVLMGF 831 Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597 N +L++TT++E GID+ +A+ +II +A FGL+ LHQ+RGRVGR + C LL Sbjct: 832 MNYDYDVLLSTTIVENGIDISNANTMIINDAHRFGLSDLHQMRGRVGRSNRKAFCYLLAP 891 Query: 598 P--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641 P L+ + RL L+N + GF +A +DL R G +LG +QSG Sbjct: 892 PKTSLTPEARRRLEALENFSELGSGFDLAMQDLDIRGAGNLLGAEQSGF 940 >gi|260591441|ref|ZP_05856899.1| transcription-repair coupling factor [Prevotella veroralis F0319] gi|260536633|gb|EEX19250.1| transcription-repair coupling factor [Prevotella veroralis F0319] Length = 1187 Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 128/400 (32%), Positives = 215/400 (53%), Gaps = 15/400 (3%) Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307 ++E G + + + ++ + + T Q A +++ QDM M R++ GDVG GKT Sbjct: 592 RREKGFAFSPDSFMQHELEASFLYEDTPDQLKATQELKQDMESARPMDRLVCGDVGFGKT 651 Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367 VA+ A A Q ++ P +LA QHY+ KK ++ + V+ ++ ++ Sbjct: 652 EVAIRAAFKAAVDNKQVAVLVPTTVLAFQHYQTFKKRLKDMPVRVDYLSRARSAKQTKQV 711 Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427 +E +A G+ +I++GTH L +++++ L L+I+DE+ +FGV + KL Q T L M+ Sbjct: 712 IEDLAEGKINILVGTHKLIGKTVKWHDLGLLIIDEEQKFGVTTKEKLRQLKTNVDTLTMS 771 Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAY 486 ATPIPRTL + +G D+S + P R PI+T I + EVI + + +S + Y Sbjct: 772 ATPIPRTLQFSLMGARDMSIMRTPPPNRYPIQTQIASFSH--EVIADAINFEMSRNGQVY 829 Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546 ++ ++ E ++++++ +AI HG+M + E ++ F N +L+ Sbjct: 830 FVNNRVGNLPE--IANLIKKYVP-----DCRVAIGHGQMKPEELEKIIMGFMNYDYDVLL 882 Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606 +TT++E GID+ +A+ III A FGL+ LHQ+RGRVGR + + C LL P + NS Sbjct: 883 STTIVENGIDISNANTIIINEAHRFGLSDLHQMRGRVGRSNKKAFCYLLAPPLAALNSDA 942 Query: 607 R-----LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641 R L + GF +A +DL R G +LG +QSG Sbjct: 943 RHRLLALETFSDLGSGFNLAMQDLDIRGAGNLLGSEQSGF 982 >gi|297569280|ref|YP_003690624.1| transcription-repair coupling factor [Desulfurivibrio alkaliphilus AHT2] gi|296925195|gb|ADH86005.1| transcription-repair coupling factor [Desulfurivibrio alkaliphilus AHT2] Length = 1179 Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 140/411 (34%), Positives = 216/411 (52%), Gaps = 15/411 (3%) Query: 237 QIALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294 Q+A L++ K+++ G + G++ ++ + P+ T Q AI ++L D+ M Sbjct: 578 QVAQDLLKLYAKRQLAPGTSFSTPGELYSELEESFPYDETPGQLKAIDEVLADLQADKPM 637 Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354 R++ GDVG GKT VA+ A VE GGQ I+ P +LA+QH ++ + VE Sbjct: 638 DRLVCGDVGYGKTEVAVRAAFKVVEDGGQVAILVPTTVLAEQHAATFRERLTGFPLRVES 697 Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 + A ++K + ++A G IIIGTH L I++ L L+I+DE+HRFGV + KL Sbjct: 698 LNRFRTPAEQKKIVAQLAAGNIDIIIGTHRLLSADIKFRNLGLLIIDEEHRFGVSHKEKL 757 Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474 + + VL +TATPIPRTL L+ LG D+S I+ P R+ +KT + R D+++ R Sbjct: 758 KKMRSGVDVLTLTATPIPRTLQLSLLGVRDLSVISSPPNLRRTVKTFVA---RHDDLVIR 814 Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534 + G+ I + S+ V + L + +A+ HG+M E +M Sbjct: 815 EAIHREMGRDGQVF---IVHNRVSSIHEVAAKVQKLVPE--ARVAVAHGQMPGKQLEEIM 869 Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594 F +L+ TT+IE G+D+ A+ III A+ GLA+++QLRGRVGR + L Sbjct: 870 VRFVRREINVLVCTTIIESGLDIPSANTIIITRADRLGLAEIYQLRGRVGRSSRQAYAYL 929 Query: 595 LYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640 L L+ + RL L + + GF +A DL+ R G ILG QSG Sbjct: 930 LVPALDDLAGEARRRLQALMDYNELGGGFKLALSDLQIRGGGNILGESQSG 980 >gi|259416898|ref|ZP_05740818.1| transcription-repair coupling factor [Silicibacter sp. TrichCH4B] gi|259348337|gb|EEW60114.1| transcription-repair coupling factor [Silicibacter sp. TrichCH4B] Length = 1151 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 136/396 (34%), Positives = 221/396 (55%), Gaps = 17/396 (4%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T Q AI+D++ D++ M R++ GDVG GKT VA+ A A +G Q I+AP Sbjct: 593 PYQETDDQLRAIEDVMSDLNSGQPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAIVAP 652 Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389 +LA+QH K+ + + V ++ +P + E +A G I++GTHAL + Sbjct: 653 TTLLARQHAAGFKERFRGFPLEVRQLSRFVPAKEAGQTREGLAKGTVDIVVGTHALLAKN 712 Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449 I++ L L+I+DE+ FGV + +L Q + HVL +TATPIPRTL L+ G D+S I Sbjct: 713 IRFQNLGLLIIDEEQHFGVAHKERLKQLRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIG 772 Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 P R I+T + + I + E L G +++++ P+I + E +E F Sbjct: 773 TPPVDRLAIRTYVTEFDAI-TIREALLREHYRGGQSFYVVPRISDLPE------IEAF-- 823 Query: 510 LHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568 L + S + +G+M+ + + M++F +G +L+ATT++E G+D+ A+ +++ A Sbjct: 824 LQDQLPELSYVVANGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMVVHRA 883 Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623 + FGLAQL+Q+RGRVGR + + L P L+ ++ RL VL + + GF +A + Sbjct: 884 DMFGLAQLYQIRGRVGRSKTRAYAYLTTKPRQKLTDSAEKRLRVLGSLDTLGAGFTLASQ 943 Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659 DL R G +LG +QSG + + EL+ S+LE A Sbjct: 944 DLDIRGAGNLLGEEQSGQMRDV--GYELYQSMLEEA 977 >gi|148554437|ref|YP_001262019.1| transcription-repair coupling factor [Sphingomonas wittichii RW1] gi|148499627|gb|ABQ67881.1| transcription-repair coupling factor [Sphingomonas wittichii RW1] Length = 1195 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 142/405 (35%), Positives = 223/405 (55%), Gaps = 26/405 (6%) Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329 P+ T+ Q+ AI D+++D++ M R++ GDVG GKT VAL A A G Q ++ P Sbjct: 648 PYQETEDQDRAIADVIEDLAAGKPMDRLVCGDVGFGKTEVALRAAFVAALGGMQVALICP 707 Query: 330 IGILAQQHY-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388 +LA+QHY F++++ + + ++ + ++ + +A G I+IGTHAL Sbjct: 708 TTLLARQHYRNFVERF-HGMPVNIGHLSRLVSAGEAKRTKDGLADGSIDIVIGTHALLAK 766 Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448 I + +L LVIVDE+ RFGV + +L T H+L +TATPIPRTL + G ++S I Sbjct: 767 GIAFKRLGLVIVDEEQRFGVTHKERLKALKTDVHMLTLTATPIPRTLQMAMSGLRELSVI 826 Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEE--KKESNFRSV 503 P R ++T + P D V+ R + +L E G +++ + P+I++ E R Sbjct: 827 QTPPVDRLAVRTYVAP---WDGVVIR-EALLREHYRGGQSFLVTPRIKDLPDIEDYLRKE 882 Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563 V S + HG+M+ + E M +F + +L++TT+IE G+D+ A+ + Sbjct: 883 VPEV---------SYVVAHGQMAAGEVEERMSAFYDKKFDILVSTTIIESGLDIPSANTL 933 Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP-PLSKNSYTRLSVLKNTED---GFL 619 I+ A+ FGLAQL+QLRGRVGR + + L L++ + RL +L+N + GF Sbjct: 934 IVNRADRFGLAQLYQLRGRVGRSKTRAYAYLTTGDRGLTETAEKRLHILQNIDTLGAGFQ 993 Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664 IA DL R G +LG +QSG K + EL+ S+LE A DAK Sbjct: 994 IASHDLDIRGAGNLLGDEQSGHIKEV--GFELYQSMLEEAILDAK 1036 >gi|226323668|ref|ZP_03799186.1| hypothetical protein COPCOM_01443 [Coprococcus comes ATCC 27758] gi|225207852|gb|EEG90206.1| hypothetical protein COPCOM_01443 [Coprococcus comes ATCC 27758] Length = 813 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 131/373 (35%), Positives = 209/373 (56%), Gaps = 19/373 (5%) Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 Q+ AI+ +DM M R++ GDVG GKT +A+ A AV+ Q V + P ILAQ Sbjct: 267 DQQLAIEATKRDMESPKIMDRLICGDVGFGKTEIAIRAAFKAVQENKQVV