RPSBLAST alignment for GI: 254780945 and conserved domain: PRK10689
>gnl|CDD|182649 PRK10689, PRK10689, transcription-repair coupling factor; Provisional. Length = 1147
Score = 253 bits (647), Expect = 1e-67
Identities = 146/379 (38%), Positives = 211/379 (55%), Gaps = 19/379 (5%)
Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
PF T Q AI +L DM Q M R++ GDVG GKT VA+ A AVE Q ++ P
Sbjct: 598 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVP 657
Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
+LAQQHY+ + N + +E+++ + + L A G+ I+IGTH L Q
Sbjct: 658 TTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSD 717
Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
+++ L L+IVDE+HRFGV+ + ++ +L +TATPIPRTL + G D+S I
Sbjct: 718 VKWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA 777
Query: 450 EKPAGRKPIKTVIIPINRIDEVIER---LKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
PA R +KT + D ++ R L+ +L G + Y++ +E N + ER
Sbjct: 778 TPPARRLAVKTF---VREYDSLVVREAILREIL-RGGQVYYLYNDVE-----NIQKAAER 828
Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
L + IAI HG+M + + E VM+ F + +L+ TT+IE GID+ A+ IIIE
Sbjct: 829 LAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 886
Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIA 621
A+HFGLAQLHQLRGRVGR + LL P ++ ++ RL + + ED GF +A
Sbjct: 887 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALA 946
Query: 622 EEDLKQRKEGEILGIKQSG 640
DL+ R GE+LG +QSG
Sbjct: 947 THDLEIRGAGELLGEEQSG 965