RPSBLAST alignment for GI: 254780945 and conserved domain: PRK10689

>gnl|CDD|182649 PRK10689, PRK10689, transcription-repair coupling factor; Provisional. Length = 1147
 Score =  253 bits (647), Expect = 1e-67
 Identities = 146/379 (38%), Positives = 211/379 (55%), Gaps = 19/379 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P
Sbjct: 598 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVP 657

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LAQQHY+  +    N  + +E+++       + + L   A G+  I+IGTH L Q  
Sbjct: 658 TTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSD 717

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I 
Sbjct: 718 VKWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA 777

Query: 450 EKPAGRKPIKTVIIPINRIDEVIER---LKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
             PA R  +KT    +   D ++ R   L+ +L  G + Y++   +E     N +   ER
Sbjct: 778 TPPARRLAVKTF---VREYDSLVVREAILREIL-RGGQVYYLYNDVE-----NIQKAAER 828

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
              L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE
Sbjct: 829 LAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 886

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIA 621
            A+HFGLAQLHQLRGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A
Sbjct: 887 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALA 946

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL+ R  GE+LG +QSG
Sbjct: 947 THDLEIRGAGELLGEEQSG 965