RPSBLAST alignment for GI: 254780945 and conserved domain: COG0513
>gnl|CDD|30859 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]. Length = 513
Score = 91.0 bits (225), Expect = 1e-18
Identities = 82/412 (19%), Positives = 155/412 (37%), Gaps = 39/412 (9%)
Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-----QAVI 326
PT Q +AI IL R + Q G+GKT L+ + + A+I
Sbjct: 51 EPTPIQLAAIPLILA-----GRDVLG-QAQTGTGKTAAFLLPLLQKILKSVERKYVSALI 104
Query: 327 MAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
+AP LA Q E ++K +N + V ++ G + + +AL+R I++ T
Sbjct: 105 LAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR----GVDIVVATPGR 160
Query: 386 FQDSIQYYKLIL-----VIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTL 435
D I+ KL L +++DE R G ++ KA P LL +AT
Sbjct: 161 LLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIR 220
Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
L D +I + + + +I + ++ + + + +E
Sbjct: 221 ELARRYLNDPVEIEVSV------EKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEG 274
Query: 496 KESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
+ F L E +A +HG + +++ ++ FK+G ++L+AT V
Sbjct: 275 RVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAA 334
Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
G+D+ D S +I + +H++ GR GR I + +L ++
Sbjct: 335 RGLDIPDVSHVINYDLPLDPEDYVHRI-GRTGRAGRKGVAISFVTE---EEEVKKLKRIE 390
Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
+ L + L + + +K + + L+ ++K
Sbjct: 391 KRLERKLPSAVLLPLDEPEDAKLLKTTRPGLEEESDISDEIKKLKSSKKALL 442