RPSBLAST alignment for GI: 254780945 and conserved domain: COG0513

>gnl|CDD|30859 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]. Length = 513
 Score = 91.0 bits (225), Expect = 1e-18
 Identities = 82/412 (19%), Positives = 155/412 (37%), Gaps = 39/412 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-----QAVI 326
            PT  Q +AI  IL       R +   Q   G+GKT   L+ +   +          A+I
Sbjct: 51  EPTPIQLAAIPLILA-----GRDVLG-QAQTGTGKTAAFLLPLLQKILKSVERKYVSALI 104

Query: 327 MAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +AP   LA Q  E ++K  +N   + V ++ G +    + +AL+R       I++ T   
Sbjct: 105 LAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR----GVDIVVATPGR 160

Query: 386 FQDSIQYYKLIL-----VIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTL 435
             D I+  KL L     +++DE  R    G    ++   KA  P    LL +AT      
Sbjct: 161 LLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIR 220

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            L      D  +I          + +   + +I +    ++    + +    +    +E 
Sbjct: 221 ELARRYLNDPVEIEVSV------EKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEG 274

Query: 496 KESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           +   F         L E        +A +HG +   +++  ++ FK+G  ++L+AT V  
Sbjct: 275 RVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAA 334

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+ D S +I  +        +H++ GR GR       I        +    +L  ++
Sbjct: 335 RGLDIPDVSHVINYDLPLDPEDYVHRI-GRTGRAGRKGVAISFVTE---EEEVKKLKRIE 390

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
              +  L +   L   +  +   +K +       +        L+ ++K   
Sbjct: 391 KRLERKLPSAVLLPLDEPEDAKLLKTTRPGLEEESDISDEIKKLKSSKKALL 442