RPSBLAST alignment for GI: 254780945 and conserved domain: COG1197
>gnl|CDD|31390 COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]. Length = 1139
Score = 322 bits (827), Expect = 2e-88
Identities = 149/426 (34%), Positives = 236/426 (55%), Gaps = 26/426 (6%)
Query: 224 ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283
AR+++ +A ++ L ++Q KK G + + ++ + P+ T Q AI++
Sbjct: 551 ARKKV---RDIAAELIKLYAKRQAKK--GFAFPPDTEWQEEFEASFPYEETPDQLKAIEE 605
Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343
+ +DM M R++ GDVG GKT VA+ A AV G Q ++ P +LAQQHYE K+
Sbjct: 606 VKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKE 665
Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
+ +E+++ +++ L+ +A G+ I+IGTH L +++ L L+I+DE+
Sbjct: 666 RFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLIIDEE 725
Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
RFGV+ + KL + VL ++ATPIPRTL ++ G D+S I P R P+KT +
Sbjct: 726 QRFGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVS 785
Query: 464 PINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIA 519
+ I E I R L G + +++ ++E EKK R +V + IA
Sbjct: 786 EYDDLLIREAILR---ELLRGGQVFYVHNRVESIEKKAERLRELVP---------EARIA 833
Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
+ HG+M + + E VM F NG +L+ TT+IE GID+ +A+ IIIE A+ FGLAQL+QL
Sbjct: 834 VAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQL 893
Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
RGRVGR + + LY P L++++ RL + + + GF +A DL+ R G +L
Sbjct: 894 RGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIASFTELGAGFKLAMHDLEIRGAGNLL 953
Query: 635 GIKQSG 640
G +QSG
Sbjct: 954 GEEQSG 959