RPSBLAST alignment for GI: 254780945 and conserved domain: COG1197

>gnl|CDD|31390 COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]. Length = 1139
 Score =  322 bits (827), Expect = 2e-88
 Identities = 149/426 (34%), Positives = 236/426 (55%), Gaps = 26/426 (6%)

Query: 224 ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283
           AR+++     +A ++  L  ++Q KK  G     + +  ++   + P+  T  Q  AI++
Sbjct: 551 ARKKV---RDIAAELIKLYAKRQAKK--GFAFPPDTEWQEEFEASFPYEETPDQLKAIEE 605

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343
           + +DM     M R++ GDVG GKT VA+ A   AV  G Q  ++ P  +LAQQHYE  K+
Sbjct: 606 VKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKE 665

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
                 + +E+++       +++ L+ +A G+  I+IGTH L    +++  L L+I+DE+
Sbjct: 666 RFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLIIDEE 725

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            RFGV+ + KL +      VL ++ATPIPRTL ++  G  D+S I   P  R P+KT + 
Sbjct: 726 QRFGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVS 785

Query: 464 PINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIA 519
             +   I E I R    L  G + +++  ++E  EKK    R +V           + IA
Sbjct: 786 EYDDLLIREAILR---ELLRGGQVFYVHNRVESIEKKAERLRELVP---------EARIA 833

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M + + E VM  F NG   +L+ TT+IE GID+ +A+ IIIE A+ FGLAQL+QL
Sbjct: 834 VAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQL 893

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + +    LY P   L++++  RL  + +  +   GF +A  DL+ R  G +L
Sbjct: 894 RGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIASFTELGAGFKLAMHDLEIRGAGNLL 953

Query: 635 GIKQSG 640
           G +QSG
Sbjct: 954 GEEQSG 959