RPSBLAST alignment for GI: 254780945 and conserved domain: COG1198

>gnl|CDD|31391 COG1198, PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]. Length = 730
 Score = 80.0 bits (197), Expect = 2e-15
 Identities = 121/653 (18%), Positives = 216/653 (33%), Gaps = 157/653 (24%)

Query: 159 VYSLPTGLSVDLFK-KIIVEALSRLPVLP-EWIE-KDLLQKKSFPSIAEAF------NII 209
           V  L +   VD  K K I   L   PVL  E +   +         + +         + 
Sbjct: 46  VVELSSESDVDGRKLKEIERVLDTEPVLTPELLRLIEWAADYYLSPLGDVLRLALPVLLR 105

Query: 210 HNPRKAKDFEW----TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI 265
               K          T   R  L   +    Q  +L    Q  +     +     ++  +
Sbjct: 106 QGYAKPSLPVLFYRLTERGRAALPDLKRAKKQARVLEALLQGGEWTRSALAHAAGVSLSV 165

Query: 266 LRNI--------------------------PFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +                            +  + Q++A++ IL  +      L  L 
Sbjct: 166 LKGLEKKGLIEIIELEPPLVVAPPDPSLSEWLALNQEQQAAVEAILSSLGGFAPFL--LD 223

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           G  GSGKT V L A+A  +  G Q +++ P I +  Q    F  ++       V ++   
Sbjct: 224 GVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAK----VAVLHSG 279

Query: 359 MPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR------ 411
           +    R +   R   G+A ++IGT  ALF   + +  L L+IVDE+H    +Q       
Sbjct: 280 LSPGERYRVWRRARRGEARVVIGTRSALF---LPFKNLGLIIVDEEHDSSYKQEDGPRYH 336

Query: 412 -----LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                +   +K  AP V+L +ATP   +      G   + ++T +    +  +  II + 
Sbjct: 337 ARDVAVLRAKKENAP-VVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMR 395

Query: 467 RID---------EVIERLKVVLSEGKKA------------------YWI----------- 488
           +            ++E ++  L  G++                    +I           
Sbjct: 396 KEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLT 455

Query: 489 ----------------------CPQIEEKKESNFRSVVER-FNSLHEHFTSSIAIIHGRM 525
                                 CP+   +         ER    L   F  +  I     
Sbjct: 456 LHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSD 515

Query: 526 SDIDKESVMDSFK---NGTCKLLIATTVIEVGIDVVDASIIIIENA------------EH 570
           +   K ++ D      NG   +LI T +I  G D  + +++ + +A            E 
Sbjct: 516 TTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASER 575

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
                L Q+ GR GR  +    ++  + P   +     ++ +   + F   E++L +RKE
Sbjct: 576 T-FQLLMQVAGRAGRAGKPGEVVIQTYNP---DHPAIQALKRGDYEAF--YEQELAERKE 629

Query: 631 GEILGIKQSGMPKF-----LIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
                    G+P F     +IA  +  +  LE AR   + +    P    V G
Sbjct: 630 L--------GLPPFSRLAAVIASAKNEEKALEFARALRELLKEALPVDVEVLG 674