RPSBLAST alignment for GI: 254780945 and conserved domain: COG1198
>gnl|CDD|31391 COG1198, PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]. Length = 730
Score = 80.0 bits (197), Expect = 2e-15
Identities = 121/653 (18%), Positives = 216/653 (33%), Gaps = 157/653 (24%)
Query: 159 VYSLPTGLSVDLFK-KIIVEALSRLPVLP-EWIE-KDLLQKKSFPSIAEAF------NII 209
V L + VD K K I L PVL E + + + + +
Sbjct: 46 VVELSSESDVDGRKLKEIERVLDTEPVLTPELLRLIEWAADYYLSPLGDVLRLALPVLLR 105
Query: 210 HNPRKAKDFEW----TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI 265
K T R L + Q +L Q + + ++ +
Sbjct: 106 QGYAKPSLPVLFYRLTERGRAALPDLKRAKKQARVLEALLQGGEWTRSALAHAAGVSLSV 165
Query: 266 LRNI--------------------------PFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
L+ + + + Q++A++ IL + L L
Sbjct: 166 LKGLEKKGLIEIIELEPPLVVAPPDPSLSEWLALNQEQQAAVEAILSSLGGFAPFL--LD 223
Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGN 358
G GSGKT V L A+A + G Q +++ P I + Q F ++ V ++
Sbjct: 224 GVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAK----VAVLHSG 279
Query: 359 MPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR------ 411
+ R + R G+A ++IGT ALF + + L L+IVDE+H +Q
Sbjct: 280 LSPGERYRVWRRARRGEARVVIGTRSALF---LPFKNLGLIIVDEEHDSSYKQEDGPRYH 336
Query: 412 -----LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
+ +K AP V+L +ATP + G + ++T + + + II +
Sbjct: 337 ARDVAVLRAKKENAP-VVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMR 395
Query: 467 RID---------EVIERLKVVLSEGKKA------------------YWI----------- 488
+ ++E ++ L G++ +I
Sbjct: 396 KEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLT 455
Query: 489 ----------------------CPQIEEKKESNFRSVVER-FNSLHEHFTSSIAIIHGRM 525
CP+ + ER L F + I
Sbjct: 456 LHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSD 515
Query: 526 SDIDKESVMDSFK---NGTCKLLIATTVIEVGIDVVDASIIIIENA------------EH 570
+ K ++ D NG +LI T +I G D + +++ + +A E
Sbjct: 516 TTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASER 575
Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
L Q+ GR GR + ++ + P + ++ + + F E++L +RKE
Sbjct: 576 T-FQLLMQVAGRAGRAGKPGEVVIQTYNP---DHPAIQALKRGDYEAF--YEQELAERKE 629
Query: 631 GEILGIKQSGMPKF-----LIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
G+P F +IA + + LE AR + + P V G
Sbjct: 630 L--------GLPPFSRLAAVIASAKNEEKALEFARALRELLKEALPVDVEVLG 674