RPSBLAST alignment for GI: 254780945 and conserved domain: KOG0333
>gnl|CDD|35554 KOG0333, KOG0333, KOG0333, U5 snRNP-like RNA helicase subunit [RNA processing and modification]. Length = 673
Score = 47.7 bits (113), Expect = 1e-05
Identities = 82/374 (21%), Positives = 148/374 (39%), Gaps = 64/374 (17%)
Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------- 320
PT Q AI LQ+ I + GSGKT LI + + +
Sbjct: 267 EPTPIQRQAIPLGLQNRDP------IGVAETGSGKTAAFLIPLLIWISSLPPMARLENNI 320
Query: 321 -GGQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHI 378
G A+I+AP LAQQ E K+ + I V +I G + +++ G I
Sbjct: 321 EGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGG----LSFEEQGFQLSMG-CEI 375
Query: 379 IIGTHALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRL---------KLTQK 417
+I T DS++ L+L V++DE R VQ+ L T +
Sbjct: 376 VIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDE 435
Query: 418 ATAPHVLLM---TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
+ ++ +T++ T+ + ++ + R+P+ I + +E+
Sbjct: 436 KEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLA-RSYLRRPVVVTIGSAGKPTPRVEQ 494
Query: 475 LKVVLSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
++SE +K + +E + N + + + E + +HG S
Sbjct: 495 KVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQE 554
Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IENAEHFGLAQLHQLRGRVG 584
+E+ + F+ GT +L+AT V GID+ + S++I ++ E + H++ GR G
Sbjct: 555 QRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDY----THRI-GRTG 609
Query: 585 RGEEISSCILLYHP 598
R + + I P
Sbjct: 610 RAGKSGTAISFLTP 623