RPSBLAST alignment for GI: 254780945 and conserved domain: KOG0337
>gnl|CDD|35558 KOG0337, KOG0337, KOG0337, ATP-dependent RNA helicase [RNA processing and modification]. Length = 529
Score = 42.7 bits (100), Expect = 3e-04
Identities = 70/326 (21%), Positives = 124/326 (38%), Gaps = 47/326 (14%)
Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
+ ++ K+ + I + +PT Q I IL + M R GSGKT LI M
Sbjct: 26 MGLDYKVLRAIHKKGFNTPTPIQRKTIPLIL-EGRDVVGMAR-----TGSGKTAAFLIPM 79
Query: 315 AAA----VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
+ G +A+I++P LA Q + +K + T++ ++ G + L
Sbjct: 80 IEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILL-- 137
Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQQRL--KLTQKATA 420
+ III T L L V+ DE R G Q++L L++ +
Sbjct: 138 --NENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPES 195
Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-VL 479
LL +AT +PR LV + K P+ + +I E+++ V
Sbjct: 196 RQTLLFSAT-LPRDLVDFA-----------KAGLVPPVLVRLDVETKISELLKVRFFRVR 243
Query: 480 SEGKKAYWICPQIEEKKESNFRSV--------VERFNSLHEHFTSSIAIIHGRMSDIDKE 531
K+A + I + + +++ VE L F + I+ + ++
Sbjct: 244 KAEKEAALLS--ILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARK 301
Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDV 557
F+ +L+ T V G+D+
Sbjct: 302 INGRDFRGRKTSILVVTDVAARGLDI 327