RPSBLAST alignment for GI: 254780945 and conserved domain: KOG0337

>gnl|CDD|35558 KOG0337, KOG0337, KOG0337, ATP-dependent RNA helicase [RNA processing and modification]. Length = 529
 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 70/326 (21%), Positives = 124/326 (38%), Gaps = 47/326 (14%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + ++ K+ + I +    +PT  Q   I  IL +      M R      GSGKT   LI M
Sbjct: 26  MGLDYKVLRAIHKKGFNTPTPIQRKTIPLIL-EGRDVVGMAR-----TGSGKTAAFLIPM 79

Query: 315 AAA----VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
                   + G +A+I++P   LA Q  + +K   + T++   ++ G      +   L  
Sbjct: 80  IEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILL-- 137

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQQRL--KLTQKATA 420
             +    III T            L L     V+ DE  R    G Q++L   L++   +
Sbjct: 138 --NENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPES 195

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-VL 479
              LL +AT +PR LV  +           K     P+   +    +I E+++     V 
Sbjct: 196 RQTLLFSAT-LPRDLVDFA-----------KAGLVPPVLVRLDVETKISELLKVRFFRVR 243

Query: 480 SEGKKAYWICPQIEEKKESNFRSV--------VERFNSLHEHFTSSIAIIHGRMSDIDKE 531
              K+A  +   I   +  + +++        VE    L   F    + I+  +    ++
Sbjct: 244 KAEKEAALLS--ILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARK 301

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDV 557
                F+     +L+ T V   G+D+
Sbjct: 302 INGRDFRGRKTSILVVTDVAARGLDI 327