RPSBLAST alignment for GI: 254780945 and conserved domain: KOG0339
>gnl|CDD|35560 KOG0339, KOG0339, KOG0339, ATP-dependent RNA helicase [RNA processing and modification]. Length = 731
Score = 49.7 bits (118), Expect = 3e-06
Identities = 64/312 (20%), Positives = 122/312 (39%), Gaps = 41/312 (13%)
Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
GSGKT + M + G VI+ P LA Q + KK+ + + V
Sbjct: 269 TGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVV 328
Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF-- 406
+ G + + K L+ A I++ T D + ++ +++DE R
Sbjct: 329 AVYGGGSKWEQSKELKE----GAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFD 384
Query: 407 -GVQQRLKLTQKATAP--HVLLMTATPIPRT--LVLTSLGD-IDISKITEKPAGRKPIKT 460
G + +++ ++ P LL +AT + L L D + + + A +T
Sbjct: 385 MGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQT 444
Query: 461 VII---PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
V + +++ ++ L SEGK ++ K+++ + L +
Sbjct: 445 VSVCPSEEKKLNWLLRHLVEFSSEGKVLIFV------TKKADAEEIAANL-KLKGF---N 494
Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
++++HG ++ V+ FK +L+AT V G+D+ ++ N + H
Sbjct: 495 VSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVV--NYDFARDIDTH 552
Query: 578 QLR-GRVGRGEE 588
R GR GR E
Sbjct: 553 THRIGRTGRAGE 564