RPSBLAST alignment for GI: 254780945 and conserved domain: KOG0339

>gnl|CDD|35560 KOG0339, KOG0339, KOG0339, ATP-dependent RNA helicase [RNA processing and modification]. Length = 731
 Score = 49.7 bits (118), Expect = 3e-06
 Identities = 64/312 (20%), Positives = 122/312 (39%), Gaps = 41/312 (13%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   +  M   +          G   VI+ P   LA Q +   KK+ +   + V 
Sbjct: 269 TGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVV 328

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF-- 406
            + G   +  + K L+      A I++ T     D     +    ++  +++DE  R   
Sbjct: 329 AVYGGGSKWEQSKELKE----GAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFD 384

Query: 407 -GVQQRLKLTQKATAP--HVLLMTATPIPRT--LVLTSLGD-IDISKITEKPAGRKPIKT 460
            G + +++  ++   P    LL +AT   +   L    L D + + +     A     +T
Sbjct: 385 MGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQT 444

Query: 461 VII---PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           V +      +++ ++  L    SEGK   ++       K+++   +      L      +
Sbjct: 445 VSVCPSEEKKLNWLLRHLVEFSSEGKVLIFV------TKKADAEEIAANL-KLKGF---N 494

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           ++++HG     ++  V+  FK     +L+AT V   G+D+     ++  N +       H
Sbjct: 495 VSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVV--NYDFARDIDTH 552

Query: 578 QLR-GRVGRGEE 588
             R GR GR  E
Sbjct: 553 THRIGRTGRAGE 564