Query gi|254780946|ref|YP_003065359.1| hypothetical protein CLIBASIA_04225 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 98 No_of_seqs 114 out of 652 Neff 5.9 Searched_HMMs 39220 Date Mon May 30 02:57:58 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780946.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 COG2938 Uncharacterized conser 99.9 6.2E-25 1.6E-29 164.9 11.0 86 1-87 7-92 (94) 2 KOG3326 consensus 99.9 2.1E-21 5.3E-26 144.5 9.7 91 3-93 54-147 (154) 3 pfam03937 Sdh5 Protein of unkn 99.7 1.5E-18 3.9E-23 127.9 4.7 51 14-64 1-51 (51) 4 PRK10878 hypothetical protein; 99.7 2.6E-16 6.5E-21 115.0 8.2 68 21-88 1-68 (72) 5 KOG2753 consensus 46.7 25 0.00064 16.7 3.6 84 6-89 160-253 (378) 6 KOG3707 consensus 23.7 61 0.0016 14.5 2.9 82 7-89 137-244 (844) 7 pfam03142 Chitin_synth_2 Chiti 19.5 57 0.0014 14.6 1.4 68 17-84 155-226 (536) 8 PRK08558 adenine phosphoribosy 19.5 75 0.0019 14.0 4.3 41 44-84 26-66 (238) 9 COG2908 Uncharacterized protei 19.1 77 0.002 13.9 4.3 53 33-86 5-66 (237) 10 TIGR02668 moaA_archaeal probab 18.7 58 0.0015 14.6 1.3 48 31-82 102-150 (324) No 1 >COG2938 Uncharacterized conserved protein [Function unknown] Probab=99.92 E-value=6.2e-25 Score=164.89 Aligned_cols=86 Identities=33% Similarity=0.573 Sum_probs=81.5 Q ss_pred CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHH Q ss_conf 98658999999999997407899999999999998202999999999999468917999999488999806756999999 Q gi|254780946|r 1 MKKNMNLQCRKIVYRCWRRGTREMDLILGSFVDHFILELSSVELTMLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFKKI 80 (98) Q Consensus 1 M~~~ld~~~krl~~Rs~rRG~kElDllL~~F~~~~~~~l~~~el~~f~~LL~~~D~dL~~wl~~~~~~p~~~~~~ii~~I 80 (98) ++++.+.+++||.|||| |||+|||+|||+|+++++++||++++..|+.||+++|+|||+|++|+.+||+....+++.+| T Consensus 7 ~~~~~d~~~~RL~~rsr-RGmrElDlil~~Fae~~~~~lsd~e~~~f~~LLe~~D~dL~~Wi~g~~~~~~~~~~~mv~~I 85 (94) T COG2938 7 STEDDDARKARLRWRSR-RGMRELDLILGPFAEKEFDSLSDEELDEFERLLECEDNDLFNWIMGHGEPPDAELTPMVRKI 85 (94) T ss_pred CCCCCHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHH T ss_conf 66567799999999998-03099999989999999851999999999999858858999998589999837889999999 Q ss_pred HHHHHHH Q ss_conf 9999822 Q gi|254780946|r 81 YDYYSNN 87 (98) Q Consensus 81 ~~f~~~~ 87 (98) +.+.... T Consensus 86 ~~~~~~~ 92 (94) T COG2938 86 QARRRIR 92 (94) T ss_pred HHHHHHC T ss_conf 9986641 No 2 >KOG3326 consensus Probab=99.86 E-value=2.1e-21 Score=144.48 Aligned_cols=91 Identities=23% Similarity=0.517 Sum_probs=85.8 Q ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC--CHHHHHHHHCCCCCCCHHHH-HHHHH Q ss_conf 6589999999999974078999999999999982029999999999994689--17999999488999806756-99999 Q gi|254780946|r 3 KNMNLQCRKIVYRCWRRGTREMDLILGSFVDHFILELSSVELTMLESIIEED--DSNLFKWFTGMEKPPEYLRT-PIFKK 79 (98) Q Consensus 3 ~~ld~~~krl~~Rs~rRG~kElDllL~~F~~~~~~~l~~~el~~f~~LL~~~--D~dL~~wl~~~~~~p~~~~~-~ii~~ 79 (98) +.+|.++.||+|||..|||+|+||+||.|+++++.+|+++++.+|+.||+.+ |+|||.|.++.++||+.+.+ +|++. T Consensus 54 e~~etkraRLlYqSrKRGiLEnDLLLs~Fa~~~l~~m~e~~l~~YD~LiN~~~~dWDi~YWaTe~kp~Pe~~~s~~V~~~ 133 (154) T KOG3326 54 EPLETKRARLLYQSRKRGILENDLLLSNFAAKNLKKMSEEQLKEYDQLINEESNDWDIYYWATETKPPPEKVESSEVFKL 133 (154) T ss_pred CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHH T ss_conf 60678899999998632346787998899999998679999999999964776783156563168799154403799999 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999822776565 Q gi|254780946|r 80 IYDYYSNNLDRKNM 93 (98) Q Consensus 80 I~~f~~~~~~~~~~ 93 (98) +++|+.++...+.+ T Consensus 134 L~e~v~n~~r~~~l 147 (154) T KOG3326 134 LKEFVKNKERVHRL 147 (154) T ss_pred HHHHHHHHHHCCCC T ss_conf 99999831001135 No 3 >pfam03937 Sdh5 Protein of unknown function (DUF339). This family of uncharacterized proteins. Based on personal observation it was previously annotated in Pfam as being a divergent TPR repeat but structural evidence has indicated this is not true. Probab=99.74 E-value=1.5e-18 Score=127.91 Aligned_cols=51 Identities=45% Similarity=0.936 Sum_probs=50.2 Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHC Q ss_conf 999740789999999999999820299999999999946891799999948 Q gi|254780946|r 14 YRCWRRGTREMDLILGSFVDHFILELSSVELTMLESIIEEDDSNLFKWFTG 64 (98) Q Consensus 14 ~Rs~rRG~kElDllL~~F~~~~~~~l~~~el~~f~~LL~~~D~dL~~wl~~ 64 (98) |||+||||||+|+|||+|+++++++++++++..|++||+++|+|||+|++| T Consensus 1 ~rs~rRG~kElDlll~~F~~~~~~~l~~~e~~~f~~lL~~~D~dL~~w~~G 51 (51) T pfam03937 1 WRSWRRGMLELDLLLGRFADAHLDTLSEEELDAFERLLDLEDPDLFDWLTG 51 (51) T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHCC T ss_conf 997745389999989999999986599999999999984997899976647 No 4 >PRK10878 hypothetical protein; Provisional Probab=99.67 E-value=2.6e-16 Score=115.03 Aligned_cols=68 Identities=25% Similarity=0.389 Sum_probs=65.4 Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999999820299999999999946891799999948899980675699999999998227 Q gi|254780946|r 21 TREMDLILGSFVDHFILELSSVELTMLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFKKIYDYYSNNL 88 (98) Q Consensus 21 ~kElDllL~~F~~~~~~~l~~~el~~f~~LL~~~D~dL~~wl~~~~~~p~~~~~~ii~~I~~f~~~~~ 88 (98) |+|+|++|.||++++|++||++++..|.+||+++|||||+|++|+..|++....+++..|++.++.+. T Consensus 1 MlELDvll~PF~e~~y~~Ls~~dk~~F~rLL~~eD~dLf~Wfm~~~~P~D~el~~mV~~I~~r~~~~g 68 (72) T PRK10878 1 MRELDISIMPFFEHEYDSLSDDEKRIFIRLLECDDPDLFNWLMNHGKPADAELEQMVRLIQTRNRERG 68 (72) T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC T ss_conf 91699988999999981369999999999981778899999968999998789999999999875238 No 5 >KOG2753 consensus Probab=46.74 E-value=25 Score=16.72 Aligned_cols=84 Identities=12% Similarity=0.206 Sum_probs=47.7 Q ss_pred HHHHHHHHHHHHHCCHHHHH----------HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHH Q ss_conf 99999999999740789999----------99999999982029999999999994689179999994889998067569 Q gi|254780946|r 6 NLQCRKIVYRCWRRGTREMD----------LILGSFVDHFILELSSVELTMLESIIEEDDSNLFKWFTGMEKPPEYLRTP 75 (98) Q Consensus 6 d~~~krl~~Rs~rRG~kElD----------llL~~F~~~~~~~l~~~el~~f~~LL~~~D~dL~~wl~~~~~~p~~~~~~ 75 (98) +...+|-.+|+-|+.+++.+ -+||.|.+.+.+...++....-.+.+.-+-.-+||=+..-.++..-.... T Consensus 160 ~vedqrel~r~v~~al~~~k~~~~s~kvmt~lLgtyt~dnas~AredA~rcV~~av~dP~~F~fD~Ll~L~pV~qLE~d~ 239 (378) T KOG2753 160 SVEDQRELLRAVHKALKDNKSVDESSKVMTELLGTYTEDNASEAREDAMRCVVEAVKDPKIFLFDHLLTLPPVKQLEGDL 239 (378) T ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEECCCHHCCCCHHHHHCCCH T ss_conf 87889999999999998611042689999999988602336678999999999997098602142230582688862165 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999982277 Q gi|254780946|r 76 IFKKIYDYYSNNLD 89 (98) Q Consensus 76 ii~~I~~f~~~~~~ 89 (98) |++.+.=|...+++ T Consensus 240 i~qLL~IF~s~~L~ 253 (378) T KOG2753 240 IHQLLKIFVSGKLD 253 (378) T ss_pred HHHHHHHHHHCCHH T ss_conf 99999999853249 No 6 >KOG3707 consensus Probab=23.74 E-value=61 Score=14.47 Aligned_cols=82 Identities=16% Similarity=0.317 Sum_probs=50.7 Q ss_pred HHHHHHHHHHHHCCHHHH--------------HHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-------CHHHHHHHHCC Q ss_conf 999999999974078999--------------999999999982029999999999994689-------17999999488 Q gi|254780946|r 7 LQCRKIVYRCWRRGTREM--------------DLILGSFVDHFILELSSVELTMLESIIEED-------DSNLFKWFTGM 65 (98) Q Consensus 7 ~~~krl~~Rs~rRG~kEl--------------DllL~~F~~~~~~~l~~~el~~f~~LL~~~-------D~dL~~wl~~~ 65 (98) .+-+|+.|+-.+ --++. -+-+|.|.+..+.+++++|....++|++.+ |++...=+-.+ T Consensus 137 trs~r~~~~~sk-~a~dfLP~~Pv~~~iepWWr~~~g~~le~d~k~Lse~E~~~iD~l~d~~A~pagl~d~~Vv~sLY~r 215 (844) T KOG3707 137 TRSKRIMWKLSK-IAKDFLPTLPVDFPIEPWWRVCLGNFLEEDFKKLSEDEMATIDKLCDEEANPAGLFDPEVVKSLYQR 215 (844) T ss_pred CCCCHHHHHCCC-CHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHC T ss_conf 356246662254-6677556787674135266542466319988743998888899997327884445698999999877 Q ss_pred C----CCCCH-HHHHHHHHHHHHHHHHHH Q ss_conf 9----99806-756999999999982277 Q gi|254780946|r 66 E----KPPEY-LRTPIFKKIYDYYSNNLD 89 (98) Q Consensus 66 ~----~~p~~-~~~~ii~~I~~f~~~~~~ 89 (98) . .+|.. .+.--+..+..|++|+.- T Consensus 216 GLiYfDVPvy~~Dri~v~pL~gFvmNRv~ 244 (844) T KOG3707 216 GLIYFDVPVYQDDRIKVSPLEGFVMNRVY 244 (844) T ss_pred CEEEEECCCCCCCEEEECCHHHHHHHCCC T ss_conf 73898335456873640530334540232 No 7 >pfam03142 Chitin_synth_2 Chitin synthase. Members of this family are fungal chitin synthase EC:2.4.1.16 enzymes. They catalyse chitin synthesis as follows: UDP-N-acetyl-D-glucosamine + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N) <= UDP + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N+1). Probab=19.53 E-value=57 Score=14.65 Aligned_cols=68 Identities=16% Similarity=0.308 Sum_probs=46.4 Q ss_pred HHCCHHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHCCC--CHHHHHHHHCCCCCCCHHHHHHHHHHHHHH Q ss_conf 740789999999999999--82029999999999994689--179999994889998067569999999999 Q gi|254780946|r 17 WRRGTREMDLILGSFVDH--FILELSSVELTMLESIIEED--DSNLFKWFTGMEKPPEYLRTPIFKKIYDYY 84 (98) Q Consensus 17 ~rRG~kElDllL~~F~~~--~~~~l~~~el~~f~~LL~~~--D~dL~~wl~~~~~~p~~~~~~ii~~I~~f~ 84 (98) -.||=+.--+++.+|+.+ +-.-+++-+.+.|..+.... ++|.|+.+.+-..--......+...+.... T Consensus 155 GNRGKRDSqiilmsFl~kv~~~~rmt~le~e~~~~i~~~~Gv~pd~ye~~l~vDADT~V~pdsl~~mv~~~~ 226 (536) T pfam03142 155 GNRGKRDSQIILMSFLQKVHFDERMTPLEYEMFHQIWNVTGVSPDFYETVLMVDADTKVFPDSLTRMVAAMV 226 (536) T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEECCHHHHHHHHHHH T ss_conf 877650378999998878750786770269999999987388901578999966886288068999999981 No 8 >PRK08558 adenine phosphoribosyltransferase; Provisional Probab=19.53 E-value=75 Score=13.95 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=33.1 Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHH Q ss_conf 99999994689179999994889998067569999999999 Q gi|254780946|r 44 LTMLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFKKIYDYY 84 (98) Q Consensus 44 l~~f~~LL~~~D~dL~~wl~~~~~~p~~~~~~ii~~I~~f~ 84 (98) ..++..++..+-+.|..+..|+.-|..+.-.+|+++|.... T Consensus 26 ykELs~~~gip~s~L~RYv~g~vlPs~e~A~~i~~~l~~~~ 66 (238) T PRK08558 26 YEELSSILGLPESVLSRYVNGHVLPSVERAREIVEKLKPYY 66 (238) T ss_pred HHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH T ss_conf 99999887979999850534887875899999999842114 No 9 >COG2908 Uncharacterized protein conserved in bacteria [Function unknown] Probab=19.10 E-value=77 Score=13.90 Aligned_cols=53 Identities=13% Similarity=0.318 Sum_probs=38.3 Q ss_pred HHHHCCCCHHHHHHHHHHHCCCCH---------HHHHHHHCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 998202999999999999468917---------999999488999806756999999999982 Q gi|254780946|r 33 DHFILELSSVELTMLESIIEEDDS---------NLFKWFTGMEKPPEYLRTPIFKKIYDYYSN 86 (98) Q Consensus 33 ~~~~~~l~~~el~~f~~LL~~~D~---------dL~~wl~~~~~~p~~~~~~ii~~I~~f~~~ 86 (98) |-|+..-.....+.|.++|....+ |||+...|...||+. .+.++.+|+...+. T Consensus 5 DlHL~~~~p~~t~~fl~Fl~~~a~~ad~lyilGDifd~w~g~~~~~~~-~~~V~~~l~~~a~~ 66 (237) T COG2908 5 DLHLGPKRPALTAFFLDFLREEAAQADALYILGDIFDGWIGDDEPPQL-HRQVAQKLLRLARK 66 (237) T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHCCCCCCHH-HHHHHHHHHHHHHC T ss_conf 002589970789999999983535675799950016666268760389-99999999999865 No 10 >TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A; InterPro: IPR013485 This entry consists of archaeal proteins which are predicted to be functionally equivalent to MoaA (molybdenum cofactor biosynthesis protein A) from bacteria (see IPR013483 from INTERPRO).; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process. Probab=18.74 E-value=58 Score=14.61 Aligned_cols=48 Identities=15% Similarity=0.273 Sum_probs=30.4 Q ss_pred HHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCC-CCCCCHHHHHHHHHHHH Q ss_conf 99998202999999999999468917999999488-99980675699999999 Q gi|254780946|r 31 FVDHFILELSSVELTMLESIIEEDDSNLFKWFTGM-EKPPEYLRTPIFKKIYD 82 (98) Q Consensus 31 F~~~~~~~l~~~el~~f~~LL~~~D~dL~~wl~~~-~~~p~~~~~~ii~~I~~ 82 (98) .+.++-.+|.++-|+--.-=|+--|++.|.+|||. ....+ .+++=|.+ T Consensus 102 LL~~~A~~Lk~AGLdRVNVSLdtld~e~Y~kITG~~~~~~~----~Vi~GI~~ 150 (324) T TIGR02668 102 LLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKITGQSRDALD----RVIEGIES 150 (324) T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCCCCCHHH----HHHHHHHH T ss_conf 48989999998285613120267886788864489986078----99999999 Done!