Query         gi|254780946|ref|YP_003065359.1| hypothetical protein CLIBASIA_04225 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 98
No_of_seqs    114 out of 652
Neff          5.9 
Searched_HMMs 33803
Date          Wed Jun  1 20:03:01 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780946.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1x6i_A Hypothetical protein Y  99.9 7.5E-27 2.2E-31  175.6   7.7   87    3-89      2-88  (91)
  2 >1puz_A Conserved hypothetical  99.9 2.3E-26 6.9E-31  172.7   9.1   81    1-82      1-81  (82)
  3 >2jr5_A UPF0350 protein VC_247  99.1 1.2E-10 3.6E-15   81.8   7.4   55   36-90      1-55  (62)
  4 >2pid_A Tyrosyl-tRNA synthetas  33.8      35   0.001   15.5   4.0   38   44-81     24-61  (107)
  5 >1h3f_A Tyrosyl-tRNA synthetas  32.9      36  0.0011   15.4   3.5   50   38-87      8-57  (115)
  6 >3erm_A Uncharacterized conser  31.9      37  0.0011   15.3   5.7   53   18-70     29-81  (91)
  7 >1y42_X Tyrosyl-tRNA synthetas  30.9      39  0.0011   15.2   2.9   39   43-81      5-43  (86)
  8 >2yxn_A Tyrosyl-tRNA synthetas  28.1      44  0.0013   14.9   3.6   39   44-82     19-57  (87)
  9 >1x2m_A LAG1 longevity assuran  27.9      44  0.0013   14.9   3.4   39   27-65     14-52  (64)
 10 >2q14_A Phosphohydrolase; BT42  25.1      41  0.0012   15.1   1.9   77    6-82      9-90  (92)
 11 >2wvr_C DNA replication factor  24.4      18 0.00054   17.1   0.0   52   11-62    462-513 (546)
 12 >2da1_A Alpha-fetoprotein enha  24.0      52  0.0015   14.5   2.5   44   20-65     15-58  (70)
 13 >2jan_A Tyrosyl-tRNA synthetas  23.4      53  0.0016   14.4   4.0   36   45-80      5-40  (97)
 14 >1xrx_A SEQA protein; protein   23.3      50  0.0015   14.6   2.1   33   54-86      6-38  (50)
 15 >3euk_L Chromosome partition p  22.4      56  0.0017   14.3   3.3   76   18-94      1-84  (155)

No 1  
>>1x6i_A Hypothetical protein YGFY; structural genomics, transcriptional regulation, structure 2 function project, S2F, unknown function; 1.20A {Escherichia coli} PDB: 1x6j_A (A:)
Probab=99.94  E-value=7.5e-27  Score=175.62  Aligned_cols=87  Identities=24%  Similarity=0.386  Sum_probs=82.9

Q ss_pred             CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             65899999999999740789999999999999820299999999999946891799999948899980675699999999
Q gi|254780946|r    3 KNMNLQCRKIVYRCWRRGTREMDLILGSFVDHFILELSSVELTMLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFKKIYD   82 (98)
Q Consensus         3 ~~ld~~~krl~~Rs~rRG~kElDllL~~F~~~~~~~l~~~el~~f~~LL~~~D~dL~~wl~~~~~~p~~~~~~ii~~I~~   82 (98)
                      ++++.+++|++||||||||+|+|+|||+|++++++++|+++++.|+.||+++|+|||+|++|+++||+...++++++|++
T Consensus         2 e~~d~~~~r~l~~~~rRG~~ElDliL~~F~~~~~~~ls~~el~~fe~LL~~~D~dL~~wl~g~~~~p~~~~~~ii~~i~~   81 (91)
T 1x6i_A            2 SHMDINNKARIHWACRRGMRELDISIMPFFEHEYDSLSDDEKRIFIRLLECDDPDLFNWLMNHGKPADAELEMMVRLIQT   81 (91)
T ss_dssp             -CCCTTCHHHHHHHTCCSSHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHTSCHHHHHHHHTTSSBCSSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             87566679898988104619999999999999998799999999999983990999999948999999999999999999


Q ss_pred             HHHHHHH
Q ss_conf             9982277
Q gi|254780946|r   83 YYSNNLD   89 (98)
Q Consensus        83 f~~~~~~   89 (98)
                      |++++..
T Consensus        82 ~~~~~~~   88 (91)
T 1x6i_A           82 RNRERGP   88 (91)
T ss_dssp             HHHHHSC
T ss_pred             HHHCCCC
T ss_conf             7060388


No 2  
>>1puz_A Conserved hypothetical protein; NMA1147, MR19, structural genomics, PSI, protein structure initiative; NMR {Neisseria meningitidis MC58} (A:)
Probab=99.93  E-value=2.3e-26  Score=172.75  Aligned_cols=81  Identities=31%  Similarity=0.457  Sum_probs=79.2

Q ss_pred             CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             98658999999999997407899999999999998202999999999999468917999999488999806756999999
Q gi|254780946|r    1 MKKNMNLQCRKIVYRCWRRGTREMDLILGSFVDHFILELSSVELTMLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFKKI   80 (98)
Q Consensus         1 M~~~ld~~~krl~~Rs~rRG~kElDllL~~F~~~~~~~l~~~el~~f~~LL~~~D~dL~~wl~~~~~~p~~~~~~ii~~I   80 (98)
                      |++..+.+++||+||| ||||+|+|+|||+|++++++++|++++..|+.||+++|+|||+|++|+++||+...++++++|
T Consensus         1 M~~~~~~~~~Rl~~r~-rRGm~ElDlll~~F~~~~~~~ls~~e~~~f~~LL~~~D~dL~~w~~g~~~~p~~~~~~ii~~i   79 (82)
T 1puz_A            1 MMVFDDIAKRKIRFQT-RRGLLELDLIFGRFMEKEFEHLSDKELSEFSEILEFQDQELLALINGHSETDKGHLIPMLEKI   79 (82)
T ss_dssp             CCCCCHHHHHHHHHHS-CCSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTSCHHHHHHHHHTCSCCSCTTHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf             9756388998999993-132599999899999998987999999999999849909999999389999929999999999


Q ss_pred             HH
Q ss_conf             99
Q gi|254780946|r   81 YD   82 (98)
Q Consensus        81 ~~   82 (98)
                      +.
T Consensus        80 r~   81 (82)
T 1puz_A           80 RR   81 (82)
T ss_dssp             HH
T ss_pred             HC
T ss_conf             70


No 3  
>>2jr5_A UPF0350 protein VC_2471; structure, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Vibrio cholerae} (A:33-94)
Probab=99.15  E-value=1.2e-10  Score=81.82  Aligned_cols=55  Identities=20%  Similarity=0.309  Sum_probs=51.7

Q ss_pred             HCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2029999999999994689179999994889998067569999999999822776
Q gi|254780946|r   36 ILELSSVELTMLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFKKIYDYYSNNLDR   90 (98)
Q Consensus        36 ~~~l~~~el~~f~~LL~~~D~dL~~wl~~~~~~p~~~~~~ii~~I~~f~~~~~~~   90 (98)
                      |+++|++++..|.+||+++|||||+|+||++.||++....++.+|+.+++.++..
T Consensus         1 y~~Ls~~ek~~F~~LL~ceDpdLF~WfM~~~~p~Dpel~~mV~~I~~r~~~k~~~   55 (62)
T 2jr5_A            1 FDSLTESEQDDFVALLESDDPDLFAWVMGHGRCENLGLAAMVDKIVAHNLSKVRL   55 (62)
T ss_dssp             TTTCCHHHHHHHHHHHTSCCHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             9879999999999998099099999995899999899999999999999987520


No 4  
>>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP- binding, ligase, mitochondrion, nucleotide-binding; HET: YSA; 2.20A {Homo sapiens} (A:1-20,A:270-356)
Probab=33.78  E-value=35  Score=15.51  Aligned_cols=38  Identities=8%  Similarity=0.095  Sum_probs=25.6

Q ss_pred             HHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             99999994689179999994889998067569999999
Q gi|254780946|r   44 LTMLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFKKIY   81 (98)
Q Consensus        44 l~~f~~LL~~~D~dL~~wl~~~~~~p~~~~~~ii~~I~   81 (98)
                      -+.|..++..+|.++.+|+.--...|.....++.+...
T Consensus        24 y~mYqk~mni~D~~v~~yl~llT~l~~eeI~~L~~~~~   61 (107)
T 2pid_A           24 FELYQFFVRQPDDSVERYLKLFTFLPLPEIDHIMQLHV   61 (107)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             99999982699989999999965799999999999873


No 5  
>>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYB; 2.0A {Thermus thermophilus} (A:235-349)
Probab=32.93  E-value=36  Score=15.43  Aligned_cols=50  Identities=14%  Similarity=0.042  Sum_probs=33.7

Q ss_pred             CCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             29999999999994689179999994889998067569999999999822
Q gi|254780946|r   38 ELSSVELTMLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFKKIYDYYSNN   87 (98)
Q Consensus        38 ~l~~~el~~f~~LL~~~D~dL~~wl~~~~~~p~~~~~~ii~~I~~f~~~~   87 (98)
                      -++++-.+-|..++..+|.++.+|+.--...|......+...=..-++..
T Consensus         8 ~Ld~sP~~~yq~~~ni~D~~v~~yl~llT~l~~~eI~~l~~~~~r~aqk~   57 (115)
T 1h3f_A            8 GLTEPPEAMFKKLMRVPDPLLPSYFRLLTDLEEEEIEALLKAGPVPAHRV   57 (115)
T ss_dssp             BTTSCHHHHHHHHHTSCGGGHHHHHHHHCCCCHHHHHHHHHHCHHHHHHH
T ss_pred             EECCCHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHH
T ss_conf             62278799999998646314567877743314888999986495369999


No 6  
>>3erm_A Uncharacterized conserved protein; APC85034, ppspto1197, seudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.45A {Pseudomonas syringae PV} (A:)
Probab=31.90  E-value=37  Score=15.33  Aligned_cols=53  Identities=9%  Similarity=0.007  Sum_probs=44.8

Q ss_pred             HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCC
Q ss_conf             40789999999999999820299999999999946891799999948899980
Q gi|254780946|r   18 RRGTREMDLILGSFVDHFILELSSVELTMLESIIEEDDSNLFKWFTGMEKPPE   70 (98)
Q Consensus        18 rRG~kElDllL~~F~~~~~~~l~~~el~~f~~LL~~~D~dL~~wl~~~~~~p~   70 (98)
                      |--|+|+-=-|..|+.+....+++.+...+--+|..+-..+-..+-|+.++..
T Consensus        29 yDKMLdlAd~L~~~L~~~~~~lde~~~E~l~l~LA~nKd~l~~~lKg~~~~~~   81 (91)
T 3erm_A           29 HDQXLELAELLTDVLIKNVPGLSEKHAEDASIYXAKNRAVFAAAFKNNATALS   81 (91)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHTTHHHHHHHHHSCGGGGG
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             99999999999999983889988889999999999779999999858987433


No 7  
>>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A (X:307-392)
Probab=30.94  E-value=39  Score=15.24  Aligned_cols=39  Identities=8%  Similarity=0.019  Sum_probs=27.0

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             999999994689179999994889998067569999999
Q gi|254780946|r   43 ELTMLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFKKIY   81 (98)
Q Consensus        43 el~~f~~LL~~~D~dL~~wl~~~~~~p~~~~~~ii~~I~   81 (98)
                      --+.|..++..+|.++..|+.--...|......+.+.+.
T Consensus         5 p~~myq~~~~i~D~~i~~yl~llT~l~~~eI~~l~~~~~   43 (86)
T 1y42_X            5 VFDFYGYFVRRSDQEVENLLKLFTFMPISEITKTMEEHI   43 (86)
T ss_dssp             HHHHHHHHHTCCTTTHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             789999880698989999999970699999999999876


No 8  
>>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* (A:1-15,A:251-322)
Probab=28.08  E-value=44  Score=14.94  Aligned_cols=39  Identities=5%  Similarity=0.049  Sum_probs=24.7

Q ss_pred             HHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             999999946891799999948899980675699999999
Q gi|254780946|r   44 LTMLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFKKIYD   82 (98)
Q Consensus        44 l~~f~~LL~~~D~dL~~wl~~~~~~p~~~~~~ii~~I~~   82 (98)
                      .+.|..++..+|.++.+|+.--...|......+.+...+
T Consensus        19 ~~~Yq~~mnv~D~~v~~yl~llT~l~~eeI~~l~~~~~~   57 (87)
T 2yxn_A           19 YKFYQFWINTADADVYRFLKFFTFMSIEEINALEEEDKN   57 (87)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf             899998717987899999998605999999999998763


No 9  
>>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:)
Probab=27.88  E-value=44  Score=14.92  Aligned_cols=39  Identities=18%  Similarity=0.260  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf             999999998202999999999999468917999999488
Q gi|254780946|r   27 ILGSFVDHFILELSSVELTMLESIIEEDDSNLFKWFTGM   65 (98)
Q Consensus        27 lL~~F~~~~~~~l~~~el~~f~~LL~~~D~dL~~wl~~~   65 (98)
                      +|..++..+-+..|..+...+..-+.+++.-+..|+-++
T Consensus        14 ~Le~~F~~~~~~Ps~~~r~~La~~~~l~~~qV~~WFqNr   52 (64)
T 1x2m_A           14 ILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQR   52 (64)
T ss_dssp             HHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             999999983899989999999999499858999975876


No 10 
>>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482} (A:224-315)
Probab=25.09  E-value=41  Score=15.07  Aligned_cols=77  Identities=14%  Similarity=0.121  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHH---HCC-HHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             999999999997---407-89999999999999820299-9999999999468917999999488999806756999999
Q gi|254780946|r    6 NLQCRKIVYRCW---RRG-TREMDLILGSFVDHFILELS-SVELTMLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFKKI   80 (98)
Q Consensus         6 d~~~krl~~Rs~---rRG-~kElDllL~~F~~~~~~~l~-~~el~~f~~LL~~~D~dL~~wl~~~~~~p~~~~~~ii~~I   80 (98)
                      |....+|.-|++   +.| ....+-.+.+|+.+...... .+.-...+..+..+|.+++..+..=...+++....+-+++
T Consensus         9 E~iL~~il~RAk~L~~~g~~~~~~~~l~~fl~~~~~~~~f~~~~~~L~~yl~LDD~~i~~~~~~W~~~~D~ILsdL~~r~   88 (92)
T 2q14_A            9 ERXLISTLLRAKELASQGVELFASPALHFFLYNDINHTEFHNNPDCLENFIQLDDNDIWTALKVWSNHPDKVLSTLSLGX   88 (92)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHSSCCCHHHHHHCHHHHHHHTTCCHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             99999999999998863111026716544203310110034664219999973569999999985037568999999998


Q ss_pred             HH
Q ss_conf             99
Q gi|254780946|r   81 YD   82 (98)
Q Consensus        81 ~~   82 (98)
                      .+
T Consensus        89 ln   90 (92)
T 2q14_A           89 IN   90 (92)
T ss_dssp             HH
T ss_pred             HH
T ss_conf             72


No 11 
>>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* (C:)
Probab=24.39  E-value=18  Score=17.11  Aligned_cols=52  Identities=13%  Similarity=0.119  Sum_probs=42.4

Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             9999997407899999999999998202999999999999468917999999
Q gi|254780946|r   11 KIVYRCWRRGTREMDLILGSFVDHFILELSSVELTMLESIIEEDDSNLFKWF   62 (98)
Q Consensus        11 rl~~Rs~rRG~kElDllL~~F~~~~~~~l~~~el~~f~~LL~~~D~dL~~wl   62 (98)
                      +.++.+.++....++.|+....+.+-..++..|.+...+||..--+|....+
T Consensus       462 ~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~e~~~~l~~l~~~~p~~~~~~  513 (546)
T 2wvr_C          462 RSVFVSERKPALSMEVACARMVGSCCTIMSPGEMEKHLLLLSELLPDWLSLH  513 (546)
T ss_dssp             ----------------------------------------------------
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             9999753777507999999999854576999999999999998687206998


No 12 
>>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} (A:)
Probab=23.96  E-value=52  Score=14.49  Aligned_cols=44  Identities=9%  Similarity=0.112  Sum_probs=36.8

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf             7899999999999998202999999999999468917999999488
Q gi|254780946|r   20 GTREMDLILGSFVDHFILELSSVELTMLESIIEEDDSNLFKWFTGM   65 (98)
Q Consensus        20 G~kElDllL~~F~~~~~~~l~~~el~~f~~LL~~~D~dL~~wl~~~   65 (98)
                      .-..+++|-.-|..+.++  +..+...+..-+.++..-+..|+.++
T Consensus        15 t~~ql~~Le~~F~~n~yP--~~~~~~~La~~~gl~~~qV~~WFqNr   58 (70)
T 2da1_A           15 TDDQLRVLRQYFDINNSP--SEEQIKEMADKSGLPQKVIKHWFRNT   58 (70)
T ss_dssp             CHHHHHHHHHHHHHCSSC--CTTHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             999999999999974998--98999999998379899935702877


No 13 
>>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} (A:248-344)
Probab=23.39  E-value=53  Score=14.43  Aligned_cols=36  Identities=3%  Similarity=0.071  Sum_probs=22.0

Q ss_pred             HHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             999999468917999999488999806756999999
Q gi|254780946|r   45 TMLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFKKI   80 (98)
Q Consensus        45 ~~f~~LL~~~D~dL~~wl~~~~~~p~~~~~~ii~~I   80 (98)
                      +.|..++..+|.++.+|+.--...|......+.+..
T Consensus         5 ~~yq~~m~i~D~~v~~y~~llT~l~~~eI~~l~~~~   40 (97)
T 2jan_A            5 AWYQYFVNTADADVIRYLRWFTFLSADELAELEQAT   40 (97)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             888675026899999999862131135777899875


No 14 
>>1xrx_A SEQA protein; protein filament, LEFT-handed helix, DNA replication inhibitor; 2.15A {Escherichia coli} (A:)
Probab=23.29  E-value=50  Score=14.58  Aligned_cols=33  Identities=12%  Similarity=0.275  Sum_probs=23.4

Q ss_pred             CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             917999999488999806756999999999982
Q gi|254780946|r   54 DDSNLFKWFTGMEKPPEYLRTPIFKKIYDYYSN   86 (98)
Q Consensus        54 ~D~dL~~wl~~~~~~p~~~~~~ii~~I~~f~~~   86 (98)
                      =|.|||.++..+..--.+--..|++++.++...
T Consensus         6 vDeeLYryIAs~T~~IGESASdILRRlL~~~~~   38 (50)
T 1xrx_A            6 VDDELYSYIASHTKHIGESASDILRRXLKFSAA   38 (50)
T ss_dssp             ECHHHHHHHHTTCSSTTCCHHHHHHHHHTC---
T ss_pred             ECHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC
T ss_conf             109999999986546324799999999758866


No 15 
>>3euk_L Chromosome partition protein MUKE; MUKB, MUKF, chromosome condensation, condensin, SMC, non-SMC subunit, ABC-type ATPase, WHD, ATP; HET: ATG; 4.00A {Haemophilus ducreyi} (L:84-238)
Probab=22.44  E-value=56  Score=14.32  Aligned_cols=76  Identities=18%  Similarity=0.291  Sum_probs=49.0

Q ss_pred             HCCHHHHHHHHHHHHHHHHCC---CC----HHHHHHHHHHHCC-CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             407899999999999998202---99----9999999999468-917999999488999806756999999999982277
Q gi|254780946|r   18 RRGTREMDLILGSFVDHFILE---LS----SVELTMLESIIEE-DDSNLFKWFTGMEKPPEYLRTPIFKKIYDYYSNNLD   89 (98)
Q Consensus        18 rRG~kElDllL~~F~~~~~~~---l~----~~el~~f~~LL~~-~D~dL~~wl~~~~~~p~~~~~~ii~~I~~f~~~~~~   89 (98)
                      |+-+-|+|.+.|.-.-.-|-+   +.    -.....|++|+.. ++.-|...+..+..-.+.....+.++++.- .+++.
T Consensus         1 rsvLSEldMlVGkvLc~LyLsperLa~~gift~qeL~deL~~ladE~kllklvn~R~~gsDlD~~Kl~Ekvr~s-L~RLr   79 (155)
T 3euk_L            1 RSAMSEMEMLVGKVLCYLYLSPERLAQQGIFSQDDVYEELLNLADENKLLKAVNPRSTGSDLDRAKLAEKVGGA-LRRLA   79 (155)
T ss_dssp             BCCCCHHHHHHHHHHHHHHTSTTSGGGTTCBCSHHHHHHHHC---------------------CCSHHHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHCCCEEEHHHHHHHHHHHHCHHHHHHHHCCCCCCCHHHHHHHHHHHHHH-HHHHH
T ss_conf             76644889899889999706998961478021899999998630579999987278998614189999999999-99988


Q ss_pred             HHHHH
Q ss_conf             65655
Q gi|254780946|r   90 RKNML   94 (98)
Q Consensus        90 ~~~~~   94 (98)
                      |.+|.
T Consensus        80 RlgmI   84 (155)
T 3euk_L           80 RIGII   84 (155)
T ss_dssp             HTTSE
T ss_pred             HCCCE
T ss_conf             55756


Done!