Query gi|254780946|ref|YP_003065359.1| hypothetical protein CLIBASIA_04225 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 98 No_of_seqs 114 out of 652 Neff 5.9 Searched_HMMs 33803 Date Wed Jun 1 20:03:01 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780946.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1x6i_A Hypothetical protein Y 99.9 7.5E-27 2.2E-31 175.6 7.7 87 3-89 2-88 (91) 2 >1puz_A Conserved hypothetical 99.9 2.3E-26 6.9E-31 172.7 9.1 81 1-82 1-81 (82) 3 >2jr5_A UPF0350 protein VC_247 99.1 1.2E-10 3.6E-15 81.8 7.4 55 36-90 1-55 (62) 4 >2pid_A Tyrosyl-tRNA synthetas 33.8 35 0.001 15.5 4.0 38 44-81 24-61 (107) 5 >1h3f_A Tyrosyl-tRNA synthetas 32.9 36 0.0011 15.4 3.5 50 38-87 8-57 (115) 6 >3erm_A Uncharacterized conser 31.9 37 0.0011 15.3 5.7 53 18-70 29-81 (91) 7 >1y42_X Tyrosyl-tRNA synthetas 30.9 39 0.0011 15.2 2.9 39 43-81 5-43 (86) 8 >2yxn_A Tyrosyl-tRNA synthetas 28.1 44 0.0013 14.9 3.6 39 44-82 19-57 (87) 9 >1x2m_A LAG1 longevity assuran 27.9 44 0.0013 14.9 3.4 39 27-65 14-52 (64) 10 >2q14_A Phosphohydrolase; BT42 25.1 41 0.0012 15.1 1.9 77 6-82 9-90 (92) 11 >2wvr_C DNA replication factor 24.4 18 0.00054 17.1 0.0 52 11-62 462-513 (546) 12 >2da1_A Alpha-fetoprotein enha 24.0 52 0.0015 14.5 2.5 44 20-65 15-58 (70) 13 >2jan_A Tyrosyl-tRNA synthetas 23.4 53 0.0016 14.4 4.0 36 45-80 5-40 (97) 14 >1xrx_A SEQA protein; protein 23.3 50 0.0015 14.6 2.1 33 54-86 6-38 (50) 15 >3euk_L Chromosome partition p 22.4 56 0.0017 14.3 3.3 76 18-94 1-84 (155) No 1 >>1x6i_A Hypothetical protein YGFY; structural genomics, transcriptional regulation, structure 2 function project, S2F, unknown function; 1.20A {Escherichia coli} PDB: 1x6j_A (A:) Probab=99.94 E-value=7.5e-27 Score=175.62 Aligned_cols=87 Identities=24% Similarity=0.386 Sum_probs=82.9 Q ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHH Q ss_conf 65899999999999740789999999999999820299999999999946891799999948899980675699999999 Q gi|254780946|r 3 KNMNLQCRKIVYRCWRRGTREMDLILGSFVDHFILELSSVELTMLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFKKIYD 82 (98) Q Consensus 3 ~~ld~~~krl~~Rs~rRG~kElDllL~~F~~~~~~~l~~~el~~f~~LL~~~D~dL~~wl~~~~~~p~~~~~~ii~~I~~ 82 (98) ++++.+++|++||||||||+|+|+|||+|++++++++|+++++.|+.||+++|+|||+|++|+++||+...++++++|++ T Consensus 2 e~~d~~~~r~l~~~~rRG~~ElDliL~~F~~~~~~~ls~~el~~fe~LL~~~D~dL~~wl~g~~~~p~~~~~~ii~~i~~ 81 (91) T 1x6i_A 2 SHMDINNKARIHWACRRGMRELDISIMPFFEHEYDSLSDDEKRIFIRLLECDDPDLFNWLMNHGKPADAELEMMVRLIQT 81 (91) T ss_dssp -CCCTTCHHHHHHHTCCSSHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHTSCHHHHHHHHTTSSBCSSHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH T ss_conf 87566679898988104619999999999999998799999999999983990999999948999999999999999999 Q ss_pred HHHHHHH Q ss_conf 9982277 Q gi|254780946|r 83 YYSNNLD 89 (98) Q Consensus 83 f~~~~~~ 89 (98) |++++.. T Consensus 82 ~~~~~~~ 88 (91) T 1x6i_A 82 RNRERGP 88 (91) T ss_dssp HHHHHSC T ss_pred HHHCCCC T ss_conf 7060388 No 2 >>1puz_A Conserved hypothetical protein; NMA1147, MR19, structural genomics, PSI, protein structure initiative; NMR {Neisseria meningitidis MC58} (A:) Probab=99.93 E-value=2.3e-26 Score=172.75 Aligned_cols=81 Identities=31% Similarity=0.457 Sum_probs=79.2 Q ss_pred CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHH Q ss_conf 98658999999999997407899999999999998202999999999999468917999999488999806756999999 Q gi|254780946|r 1 MKKNMNLQCRKIVYRCWRRGTREMDLILGSFVDHFILELSSVELTMLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFKKI 80 (98) Q Consensus 1 M~~~ld~~~krl~~Rs~rRG~kElDllL~~F~~~~~~~l~~~el~~f~~LL~~~D~dL~~wl~~~~~~p~~~~~~ii~~I 80 (98) |++..+.+++||+||| ||||+|+|+|||+|++++++++|++++..|+.||+++|+|||+|++|+++||+...++++++| T Consensus 1 M~~~~~~~~~Rl~~r~-rRGm~ElDlll~~F~~~~~~~ls~~e~~~f~~LL~~~D~dL~~w~~g~~~~p~~~~~~ii~~i 79 (82) T 1puz_A 1 MMVFDDIAKRKIRFQT-RRGLLELDLIFGRFMEKEFEHLSDKELSEFSEILEFQDQELLALINGHSETDKGHLIPMLEKI 79 (82) T ss_dssp CCCCCHHHHHHHHHHS-CCSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTSCHHHHHHHHHTCSCCSCTTHHHHHHHH T ss_pred CCCCCHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHH T ss_conf 9756388998999993-132599999899999998987999999999999849909999999389999929999999999 Q ss_pred HH Q ss_conf 99 Q gi|254780946|r 81 YD 82 (98) Q Consensus 81 ~~ 82 (98) +. T Consensus 80 r~ 81 (82) T 1puz_A 80 RR 81 (82) T ss_dssp HH T ss_pred HC T ss_conf 70 No 3 >>2jr5_A UPF0350 protein VC_2471; structure, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Vibrio cholerae} (A:33-94) Probab=99.15 E-value=1.2e-10 Score=81.82 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=51.7 Q ss_pred HCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 2029999999999994689179999994889998067569999999999822776 Q gi|254780946|r 36 ILELSSVELTMLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFKKIYDYYSNNLDR 90 (98) Q Consensus 36 ~~~l~~~el~~f~~LL~~~D~dL~~wl~~~~~~p~~~~~~ii~~I~~f~~~~~~~ 90 (98) |+++|++++..|.+||+++|||||+|+||++.||++....++.+|+.+++.++.. T Consensus 1 y~~Ls~~ek~~F~~LL~ceDpdLF~WfM~~~~p~Dpel~~mV~~I~~r~~~k~~~ 55 (62) T 2jr5_A 1 FDSLTESEQDDFVALLESDDPDLFAWVMGHGRCENLGLAAMVDKIVAHNLSKVRL 55 (62) T ss_dssp TTTCCHHHHHHHHHHHTSCCHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHH T ss_pred HHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC T ss_conf 9879999999999998099099999995899999899999999999999987520 No 4 >>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP- binding, ligase, mitochondrion, nucleotide-binding; HET: YSA; 2.20A {Homo sapiens} (A:1-20,A:270-356) Probab=33.78 E-value=35 Score=15.51 Aligned_cols=38 Identities=8% Similarity=0.095 Sum_probs=25.6 Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 99999994689179999994889998067569999999 Q gi|254780946|r 44 LTMLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFKKIY 81 (98) Q Consensus 44 l~~f~~LL~~~D~dL~~wl~~~~~~p~~~~~~ii~~I~ 81 (98) -+.|..++..+|.++.+|+.--...|.....++.+... T Consensus 24 y~mYqk~mni~D~~v~~yl~llT~l~~eeI~~L~~~~~ 61 (107) T 2pid_A 24 FELYQFFVRQPDDSVERYLKLFTFLPLPEIDHIMQLHV 61 (107) T ss_dssp HHHHHHHHTCCHHHHHHHHHHHCCCCHHHHHHHHHHHH T ss_pred HHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 99999982699989999999965799999999999873 No 5 >>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYB; 2.0A {Thermus thermophilus} (A:235-349) Probab=32.93 E-value=36 Score=15.43 Aligned_cols=50 Identities=14% Similarity=0.042 Sum_probs=33.7 Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 29999999999994689179999994889998067569999999999822 Q gi|254780946|r 38 ELSSVELTMLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFKKIYDYYSNN 87 (98) Q Consensus 38 ~l~~~el~~f~~LL~~~D~dL~~wl~~~~~~p~~~~~~ii~~I~~f~~~~ 87 (98) -++++-.+-|..++..+|.++.+|+.--...|......+...=..-++.. T Consensus 8 ~Ld~sP~~~yq~~~ni~D~~v~~yl~llT~l~~~eI~~l~~~~~r~aqk~ 57 (115) T 1h3f_A 8 GLTEPPEAMFKKLMRVPDPLLPSYFRLLTDLEEEEIEALLKAGPVPAHRV 57 (115) T ss_dssp BTTSCHHHHHHHHHTSCGGGHHHHHHHHCCCCHHHHHHHHHHCHHHHHHH T ss_pred EECCCHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHH T ss_conf 62278799999998646314567877743314888999986495369999 No 6 >>3erm_A Uncharacterized conserved protein; APC85034, ppspto1197, seudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.45A {Pseudomonas syringae PV} (A:) Probab=31.90 E-value=37 Score=15.33 Aligned_cols=53 Identities=9% Similarity=0.007 Sum_probs=44.8 Q ss_pred HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCC Q ss_conf 40789999999999999820299999999999946891799999948899980 Q gi|254780946|r 18 RRGTREMDLILGSFVDHFILELSSVELTMLESIIEEDDSNLFKWFTGMEKPPE 70 (98) Q Consensus 18 rRG~kElDllL~~F~~~~~~~l~~~el~~f~~LL~~~D~dL~~wl~~~~~~p~ 70 (98) |--|+|+-=-|..|+.+....+++.+...+--+|..+-..+-..+-|+.++.. T Consensus 29 yDKMLdlAd~L~~~L~~~~~~lde~~~E~l~l~LA~nKd~l~~~lKg~~~~~~ 81 (91) T 3erm_A 29 HDQXLELAELLTDVLIKNVPGLSEKHAEDASIYXAKNRAVFAAAFKNNATALS 81 (91) T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHTTHHHHHHHHHSCGGGGG T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 99999999999999983889988889999999999779999999858987433 No 7 >>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A (X:307-392) Probab=30.94 E-value=39 Score=15.24 Aligned_cols=39 Identities=8% Similarity=0.019 Sum_probs=27.0 Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 999999994689179999994889998067569999999 Q gi|254780946|r 43 ELTMLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFKKIY 81 (98) Q Consensus 43 el~~f~~LL~~~D~dL~~wl~~~~~~p~~~~~~ii~~I~ 81 (98) --+.|..++..+|.++..|+.--...|......+.+.+. T Consensus 5 p~~myq~~~~i~D~~i~~yl~llT~l~~~eI~~l~~~~~ 43 (86) T 1y42_X 5 VFDFYGYFVRRSDQEVENLLKLFTFMPISEITKTMEEHI 43 (86) T ss_dssp HHHHHHHHHTCCTTTHHHHHHHHCCCCHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 789999880698989999999970699999999999876 No 8 >>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* (A:1-15,A:251-322) Probab=28.08 E-value=44 Score=14.94 Aligned_cols=39 Identities=5% Similarity=0.049 Sum_probs=24.7 Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHH Q ss_conf 999999946891799999948899980675699999999 Q gi|254780946|r 44 LTMLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFKKIYD 82 (98) Q Consensus 44 l~~f~~LL~~~D~dL~~wl~~~~~~p~~~~~~ii~~I~~ 82 (98) .+.|..++..+|.++.+|+.--...|......+.+...+ T Consensus 19 ~~~Yq~~mnv~D~~v~~yl~llT~l~~eeI~~l~~~~~~ 57 (87) T 2yxn_A 19 YKFYQFWINTADADVYRFLKFFTFMSIEEINALEEEDKN 57 (87) T ss_dssp HHHHHHHHTCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC T ss_conf 899998717987899999998605999999999998763 No 9 >>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:) Probab=27.88 E-value=44 Score=14.92 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=31.3 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCC Q ss_conf 999999998202999999999999468917999999488 Q gi|254780946|r 27 ILGSFVDHFILELSSVELTMLESIIEEDDSNLFKWFTGM 65 (98) Q Consensus 27 lL~~F~~~~~~~l~~~el~~f~~LL~~~D~dL~~wl~~~ 65 (98) +|..++..+-+..|..+...+..-+.+++.-+..|+-++ T Consensus 14 ~Le~~F~~~~~~Ps~~~r~~La~~~~l~~~qV~~WFqNr 52 (64) T 1x2m_A 14 ILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQR 52 (64) T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 999999983899989999999999499858999975876 No 10 >>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482} (A:224-315) Probab=25.09 E-value=41 Score=15.07 Aligned_cols=77 Identities=14% Similarity=0.121 Sum_probs=44.0 Q ss_pred HHHHHHHHHHHH---HCC-HHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHH Q ss_conf 999999999997---407-89999999999999820299-9999999999468917999999488999806756999999 Q gi|254780946|r 6 NLQCRKIVYRCW---RRG-TREMDLILGSFVDHFILELS-SVELTMLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFKKI 80 (98) Q Consensus 6 d~~~krl~~Rs~---rRG-~kElDllL~~F~~~~~~~l~-~~el~~f~~LL~~~D~dL~~wl~~~~~~p~~~~~~ii~~I 80 (98) |....+|.-|++ +.| ....+-.+.+|+.+...... .+.-...+..+..+|.+++..+..=...+++....+-+++ T Consensus 9 E~iL~~il~RAk~L~~~g~~~~~~~~l~~fl~~~~~~~~f~~~~~~L~~yl~LDD~~i~~~~~~W~~~~D~ILsdL~~r~ 88 (92) T 2q14_A 9 ERXLISTLLRAKELASQGVELFASPALHFFLYNDINHTEFHNNPDCLENFIQLDDNDIWTALKVWSNHPDKVLSTLSLGX 88 (92) T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHSSCCCHHHHHHCHHHHHHHTTCCHHHHHHHHHHHTTCSCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 99999999999998863111026716544203310110034664219999973569999999985037568999999998 Q ss_pred HH Q ss_conf 99 Q gi|254780946|r 81 YD 82 (98) Q Consensus 81 ~~ 82 (98) .+ T Consensus 89 ln 90 (92) T 2q14_A 89 IN 90 (92) T ss_dssp HH T ss_pred HH T ss_conf 72 No 11 >>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* (C:) Probab=24.39 E-value=18 Score=17.11 Aligned_cols=52 Identities=13% Similarity=0.119 Sum_probs=42.4 Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHH Q ss_conf 9999997407899999999999998202999999999999468917999999 Q gi|254780946|r 11 KIVYRCWRRGTREMDLILGSFVDHFILELSSVELTMLESIIEEDDSNLFKWF 62 (98) Q Consensus 11 rl~~Rs~rRG~kElDllL~~F~~~~~~~l~~~el~~f~~LL~~~D~dL~~wl 62 (98) +.++.+.++....++.|+....+.+-..++..|.+...+||..--+|....+ T Consensus 462 ~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~e~~~~l~~l~~~~p~~~~~~ 513 (546) T 2wvr_C 462 RSVFVSERKPALSMEVACARMVGSCCTIMSPGEMEKHLLLLSELLPDWLSLH 513 (546) T ss_dssp ---------------------------------------------------- T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEE T ss_conf 9999753777507999999999854576999999999999998687206998 No 12 >>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} (A:) Probab=23.96 E-value=52 Score=14.49 Aligned_cols=44 Identities=9% Similarity=0.112 Sum_probs=36.8 Q ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCC Q ss_conf 7899999999999998202999999999999468917999999488 Q gi|254780946|r 20 GTREMDLILGSFVDHFILELSSVELTMLESIIEEDDSNLFKWFTGM 65 (98) Q Consensus 20 G~kElDllL~~F~~~~~~~l~~~el~~f~~LL~~~D~dL~~wl~~~ 65 (98) .-..+++|-.-|..+.++ +..+...+..-+.++..-+..|+.++ T Consensus 15 t~~ql~~Le~~F~~n~yP--~~~~~~~La~~~gl~~~qV~~WFqNr 58 (70) T 2da1_A 15 TDDQLRVLRQYFDINNSP--SEEQIKEMADKSGLPQKVIKHWFRNT 58 (70) T ss_dssp CHHHHHHHHHHHHHCSSC--CTTHHHHHHHHHCCCHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 999999999999974998--98999999998379899935702877 No 13 >>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} (A:248-344) Probab=23.39 E-value=53 Score=14.43 Aligned_cols=36 Identities=3% Similarity=0.071 Sum_probs=22.0 Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHH Q ss_conf 999999468917999999488999806756999999 Q gi|254780946|r 45 TMLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFKKI 80 (98) Q Consensus 45 ~~f~~LL~~~D~dL~~wl~~~~~~p~~~~~~ii~~I 80 (98) +.|..++..+|.++.+|+.--...|......+.+.. T Consensus 5 ~~yq~~m~i~D~~v~~y~~llT~l~~~eI~~l~~~~ 40 (97) T 2jan_A 5 AWYQYFVNTADADVIRYLRWFTFLSADELAELEQAT 40 (97) T ss_dssp HHHHHHHTCCHHHHHHHHHHHSCCCHHHHHHHHHHH T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 888675026899999999862131135777899875 No 14 >>1xrx_A SEQA protein; protein filament, LEFT-handed helix, DNA replication inhibitor; 2.15A {Escherichia coli} (A:) Probab=23.29 E-value=50 Score=14.58 Aligned_cols=33 Identities=12% Similarity=0.275 Sum_probs=23.4 Q ss_pred CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 917999999488999806756999999999982 Q gi|254780946|r 54 DDSNLFKWFTGMEKPPEYLRTPIFKKIYDYYSN 86 (98) Q Consensus 54 ~D~dL~~wl~~~~~~p~~~~~~ii~~I~~f~~~ 86 (98) =|.|||.++..+..--.+--..|++++.++... T Consensus 6 vDeeLYryIAs~T~~IGESASdILRRlL~~~~~ 38 (50) T 1xrx_A 6 VDDELYSYIASHTKHIGESASDILRRXLKFSAA 38 (50) T ss_dssp ECHHHHHHHHTTCSSTTCCHHHHHHHHHTC--- T ss_pred ECHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC T ss_conf 109999999986546324799999999758866 No 15 >>3euk_L Chromosome partition protein MUKE; MUKB, MUKF, chromosome condensation, condensin, SMC, non-SMC subunit, ABC-type ATPase, WHD, ATP; HET: ATG; 4.00A {Haemophilus ducreyi} (L:84-238) Probab=22.44 E-value=56 Score=14.32 Aligned_cols=76 Identities=18% Similarity=0.291 Sum_probs=49.0 Q ss_pred HCCHHHHHHHHHHHHHHHHCC---CC----HHHHHHHHHHHCC-CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 407899999999999998202---99----9999999999468-917999999488999806756999999999982277 Q gi|254780946|r 18 RRGTREMDLILGSFVDHFILE---LS----SVELTMLESIIEE-DDSNLFKWFTGMEKPPEYLRTPIFKKIYDYYSNNLD 89 (98) Q Consensus 18 rRG~kElDllL~~F~~~~~~~---l~----~~el~~f~~LL~~-~D~dL~~wl~~~~~~p~~~~~~ii~~I~~f~~~~~~ 89 (98) |+-+-|+|.+.|.-.-.-|-+ +. -.....|++|+.. ++.-|...+..+..-.+.....+.++++.- .+++. T Consensus 1 rsvLSEldMlVGkvLc~LyLsperLa~~gift~qeL~deL~~ladE~kllklvn~R~~gsDlD~~Kl~Ekvr~s-L~RLr 79 (155) T 3euk_L 1 RSAMSEMEMLVGKVLCYLYLSPERLAQQGIFSQDDVYEELLNLADENKLLKAVNPRSTGSDLDRAKLAEKVGGA-LRRLA 79 (155) T ss_dssp BCCCCHHHHHHHHHHHHHHTSTTSGGGTTCBCSHHHHHHHHC---------------------CCSHHHHHHHH-HHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHCCCEEEHHHHHHHHHHHHCHHHHHHHHCCCCCCCHHHHHHHHHHHHHH-HHHHH T ss_conf 76644889899889999706998961478021899999998630579999987278998614189999999999-99988 Q ss_pred HHHHH Q ss_conf 65655 Q gi|254780946|r 90 RKNML 94 (98) Q Consensus 90 ~~~~~ 94 (98) |.+|. T Consensus 80 RlgmI 84 (155) T 3euk_L 80 RIGII 84 (155) T ss_dssp HTTSE T ss_pred HCCCE T ss_conf 55756 Done!