HHsearch alignment for GI: 254780947 and conserved domain: COG0513
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].
Probab=99.89 E-value=2.3e-18 Score=160.31 Aligned_cols=337 Identities=20% Similarity=0.228 Sum_probs=250.5
Q ss_pred CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH----CCCCE-EEEEE
Q ss_conf 77878467898998488888744899999998760598854144316654324899999998751----12754-99982
Q gi|254780947|r 607 PLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAV----MNGLQ-VAVIA 681 (1187)
Q Consensus 607 ~f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav----~~gkQ-vavlv 681 (1187)
T Consensus 33 ~l~l~~~ll~~l~~~gf~~pt~IQ~~~iP~~l~g------~Dvi~~A~TGsGKT~Af~lP~l~~i~~~~~~~~~~aLil~ 106 (513)
T COG0513 33 SLGLSPELLQALKDLGFEEPTPIQLAAIPLILAG------RDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILA 106 (513)
T ss_pred HCCCCHHHHHHHHHCCCCCCCHHHHHHCHHHHCC------CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 6599999999999659899898999658776369------9979986898717899999999997400455777569977
Q ss_pred CHHHHHHHHHHHHHHHHCCC-CCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHH----HH-CCCCCCCCCCEEEEEC
Q ss_conf 43665558999999860678-983354106663025677775312257608985206----54-2785202365699722
Q gi|254780947|r 682 PTTLLVRQHFRLFSERFQGF-SVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHA----LL-NPKITFANLGLIIIDE 755 (1187)
Q Consensus 682 PTTiLa~QH~~tf~~Rf~~~-pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~----ll-~~~v~f~~LgLliiDE 755 (1187)
T Consensus 107 PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~---~~l~~g-~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDE 182 (513)
T COG0513 107 PTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQI---EALKRG-VDIVVATPGRLLDLIKRGKLDLSGVETLVLDE 182 (513)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH---HHHHCC-CCEEEECCCHHHHHHHCCCCCCCCEEEEEECC
T ss_conf 99999999999999998624584299998998989999---987249-98999796089999864885546501899676
Q ss_pred HHH-----HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCC----CCEEEEEEECCHHHHHHH
Q ss_conf 233-----00888998863167884899953534088999971222541220157887----753799985797898999
Q gi|254780947|r 756 EQH-----FGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINR----IACRTSISIFDPLVVRET 826 (1187)
Q Consensus 756 Eqr-----FGV~~Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R----~~v~T~v~~~~~~~i~~a 826 (1187)
T Consensus 183 ADrmld~gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~ 262 (513)
T COG0513 183 ADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLE 262 (513)
T ss_pred HHHHCCCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEEECCHHHHHH
T ss_conf 17663887689999999738977489999824898999999997368807996432233530047079998085677999
Q ss_pred HHHHHH---HCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCC
Q ss_conf 998987---18859998264469288999998616546488861346747899999999638875797610200363322
Q gi|254780947|r 827 LMREYY---RGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLP 903 (1187)
Q Consensus 827 i~rEl~---RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip 903 (1187)
T Consensus 263 ~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g--~~~~~lhG~l~q~~R~~~l~~F~~g~~~iLVaTDvaaRGiDi~ 340 (513)
T COG0513 263 LLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRG--FKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIP 340 (513)
T ss_pred HHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECHHHCCCCCC
T ss_conf 99999827888839999576776999999999789--6599973889988999999999759989899806544689966
Q ss_pred CCCEEEEECHHHCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 3326676250235886045532210356767369999668888898899999999972
Q gi|254780947|r 904 KANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSL 961 (1187)
Q Consensus 904 ~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~ 961 (1187)
T Consensus 341 ~v~~VinyD~p~~~e~yvH-RiGRTgRaG~~G~ai~fv~~~-----~e~~~l~~i~~~ 392 (513)
T COG0513 341 DVSHVINYDLPLDPEDYVH-RIGRTGRAGRKGVAISFVTEE-----EEVKKLKRIEKR 392 (513)
T ss_pred CCCEEEECCCCCCCCCCCC-CCCCCCCCCCCCEEEEEECCH-----HHHHHHHHHHHH
T ss_conf 6747997879998041317-345343489987279985562-----349999999998