HHsearch alignment for GI: 254780947 and conserved domain: COG0513

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].
Probab=99.89  E-value=2.3e-18  Score=160.31  Aligned_cols=337  Identities=20%  Similarity=0.228  Sum_probs=250.5

Q ss_pred             CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH----CCCCE-EEEEE
Q ss_conf             77878467898998488888744899999998760598854144316654324899999998751----12754-99982
Q gi|254780947|r  607 PLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAV----MNGLQ-VAVIA  681 (1187)
Q Consensus       607 ~f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav----~~gkQ-vavlv  681 (1187)
T Consensus        33 ~l~l~~~ll~~l~~~gf~~pt~IQ~~~iP~~l~g------~Dvi~~A~TGsGKT~Af~lP~l~~i~~~~~~~~~~aLil~  106 (513)
T COG0513          33 SLGLSPELLQALKDLGFEEPTPIQLAAIPLILAG------RDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILA  106 (513)
T ss_pred             HCCCCHHHHHHHHHCCCCCCCHHHHHHCHHHHCC------CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf             6599999999999659899898999658776369------9979986898717899999999997400455777569977


Q ss_pred             CHHHHHHHHHHHHHHHHCCC-CCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHH----HH-CCCCCCCCCCEEEEEC
Q ss_conf             43665558999999860678-983354106663025677775312257608985206----54-2785202365699722
Q gi|254780947|r  682 PTTLLVRQHFRLFSERFQGF-SVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHA----LL-NPKITFANLGLIIIDE  755 (1187)
Q Consensus       682 PTTiLa~QH~~tf~~Rf~~~-pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~----ll-~~~v~f~~LgLliiDE  755 (1187)
T Consensus       107 PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~---~~l~~g-~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDE  182 (513)
T COG0513         107 PTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQI---EALKRG-VDIVVATPGRLLDLIKRGKLDLSGVETLVLDE  182 (513)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH---HHHHCC-CCEEEECCCHHHHHHHCCCCCCCCEEEEEECC
T ss_conf             99999999999999998624584299998998989999---987249-98999796089999864885546501899676


Q ss_pred             HHH-----HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCC----CCEEEEEEECCHHHHHHH
Q ss_conf             233-----00888998863167884899953534088999971222541220157887----753799985797898999
Q gi|254780947|r  756 EQH-----FGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINR----IACRTSISIFDPLVVRET  826 (1187)
Q Consensus       756 Eqr-----FGV~~Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R----~~v~T~v~~~~~~~i~~a  826 (1187)
T Consensus       183 ADrmld~gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~  262 (513)
T COG0513         183 ADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLE  262 (513)
T ss_pred             HHHHCCCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEEECCHHHHHH
T ss_conf             17663887689999999738977489999824898999999997368807996432233530047079998085677999


Q ss_pred             HHHHHH---HCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCC
Q ss_conf             998987---18859998264469288999998616546488861346747899999999638875797610200363322
Q gi|254780947|r  827 LMREYY---RGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLP  903 (1187)
Q Consensus       827 i~rEl~---RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip  903 (1187)
T Consensus       263 ~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g--~~~~~lhG~l~q~~R~~~l~~F~~g~~~iLVaTDvaaRGiDi~  340 (513)
T COG0513         263 LLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRG--FKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIP  340 (513)
T ss_pred             HHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECHHHCCCCCC
T ss_conf             99999827888839999576776999999999789--6599973889988999999999759989899806544689966


Q ss_pred             CCCEEEEECHHHCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             3326676250235886045532210356767369999668888898899999999972
Q gi|254780947|r  904 KANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSL  961 (1187)
Q Consensus       904 ~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~  961 (1187)
T Consensus       341 ~v~~VinyD~p~~~e~yvH-RiGRTgRaG~~G~ai~fv~~~-----~e~~~l~~i~~~  392 (513)
T COG0513         341 DVSHVINYDLPLDPEDYVH-RIGRTGRAGRKGVAISFVTEE-----EEVKKLKRIEKR  392 (513)
T ss_pred             CCCEEEECCCCCCCCCCCC-CCCCCCCCCCCCEEEEEECCH-----HHHHHHHHHHHH
T ss_conf             6747997879998041317-345343489987279985562-----349999999998