HHsearch alignment for GI: 254780947 and conserved domain: COG0556
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair].
Probab=97.60 E-value=0.0033 Score=43.48 Aligned_cols=177 Identities=22% Similarity=0.318 Sum_probs=124.7
Q ss_pred CCCCCEEEEECHHHH----HH------HHHHH---------------------HHHCCCCCCEEEEECCCCCHHHHHHHH
Q ss_conf 023656997222330----08------88998---------------------863167884899953534088999971
Q gi|254780947|r 745 FANLGLIIIDEEQHF----GV------KHKEA---------------------LKETHTGVHVLTLSATPIPRTLQLAIT 793 (1187)
Q Consensus 745 f~~LgLliiDEEqrF----GV------~~Ke~---------------------lk~~~~~vdvLtlsATPIPRTL~msl~ 793 (1187)
T Consensus 329 fp~d~Ll~IDESHvTvPQi~gMynGDrsRK~~LVeyGFRLPSAlDNRPL~feEf~~~~--~q~i~VSATPg~~E~e~s~~ 406 (663)
T COG0556 329 FPDDFLLFIDESHVTVPQIGGMYNGDRSRKQTLVEYGFRLPSALDNRPLKFEEFEAKI--PQTIYVSATPGDYELEQSGG 406 (663)
T ss_pred CCCCEEEEEECCCCCHHHHHCHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC--CCEEEEECCCCHHHHHHCCC
T ss_conf 8841389982444650765320133378888898715768611137997779999745--97799978997487774558
Q ss_pred C-----CCCCCEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCC--CCEEEE
Q ss_conf 2-----225412201578877537999857978989999989871885999826446928899999861654--648886
Q gi|254780947|r 794 G-----VRELSLISMPPINRIACRTSISIFDPLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPE--LKIAMA 866 (1187)
Q Consensus 794 g-----~rd~S~i~tpP~~R~~v~T~v~~~~~~~i~~ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l~p~--~~i~va 866 (1187)
T Consensus 407 ~vveQiIRPTGLl-DP~ievRp~~~Qv----dDL~~E-I~~r~~~~eRvLVTtLT----KkmAEdLT~Yl~e~gikv~Yl 476 (663)
T COG0556 407 NVVEQIIRPTGLL-DPEIEVRPTKGQV----DDLLSE-IRKRVAKNERVLVTTLT----KKMAEDLTEYLKELGIKVRYL 476 (663)
T ss_pred CEEEEEECCCCCC-CCCEEEECCCCCH----HHHHHH-HHHHHHCCCEEEEEEEH----HHHHHHHHHHHHHCCCEEEEE
T ss_conf 4268872477888-9852651487747----899999-99999649729998436----888999999998669647864
Q ss_pred ECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCC----CHHHHHHHHCCCCCC
Q ss_conf 1346747899999999638875797610200363322332667625023588----604553221035676
Q gi|254780947|r 867 HGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGL----AQLYQLRGRVGRSKI 933 (1187)
Q Consensus 867 HGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GL----aqlyQlrGRVGRs~~ 933 (1187)
T Consensus 477 HSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~ 547 (663)
T COG0556 477 HSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 (663)
T ss_pred ECCCHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 24403899999999975778748985013313478864557988606854443453259999878863579