HHsearch alignment for GI: 254780947 and conserved domain: COG0610
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].
Probab=96.80 E-value=0.05 Score=34.33 Aligned_cols=319 Identities=18% Similarity=0.182 Sum_probs=170.2
Q ss_pred HHHHHH-HHHHHCCCCCC---CCEEEECCCCCCHHHHHHHHHHHHHC--CCCEEEEEECHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 899999-99876059885---41443166543248999999987511--2754999824366555899999986067898
Q gi|254780947|r 630 QEKAID-AVIQDLSSGRL---MDRLICGDVGFGKTEIALRAAFIAVM--NGLQVAVIAPTTLLVRQHFRLFSERFQGFSV 703 (1187)
Q Consensus 630 Q~~AI~-eV~~Dmes~~P---MDRLiCGDVGfGKTEVA~RAafkav~--~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv 703 (1187)
T Consensus 253 q~~a~~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTltm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~ 332 (962)
T COG0610 253 QYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFN 332 (962)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999997126787772389840698378999999999983659996999967288999999999998876320
Q ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCC-------CCCCCCEEEEECHHH--HHHHHHHHHHHCCCCC
Q ss_conf 3354106663025677775312257608985206542785-------202365699722233--0088899886316788
Q gi|254780947|r 704 RIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKI-------TFANLGLIIIDEEQH--FGVKHKEALKETHTGV 774 (1187)
Q Consensus 704 ~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v-------~f~~LgLliiDEEqr--FGV~~Ke~lk~~~~~v 774 (1187)
T Consensus 333 ~~----~~~s~~~Lk~~l~~~---~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G~~~~~~-~~~~~~a 404 (962)
T COG0610 333 DP----KAESTSELKELLEDG---KGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYGELAKLL-KKALKKA 404 (962)
T ss_pred CC----CCCCHHHHHHHHHCC---CCCEEEEEECCCCHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHH-HHHHCCC
T ss_conf 44----445799999998658---984899971026433333320004787679998640103560789999-9870367
Q ss_pred CEEEEECCCCCHHHHH---HHH-----------CCCCCCEEECCCCCCCCEEEEEEECC------HHHHHH---HHHHHH
Q ss_conf 4899953534088999---971-----------22254122015788775379998579------789899---999898
Q gi|254780947|r 775 HVLTLSATPIPRTLQL---AIT-----------GVRELSLISMPPINRIACRTSISIFD------PLVVRE---TLMREY 831 (1187)
Q Consensus 775 dvLtlsATPIPRTL~m---sl~-----------g~rd~S~i~tpP~~R~~v~T~v~~~~------~~~i~~---ai~rEl 831 (1187)
T Consensus 405 ~~~gFTGTPi~~~d~~tt~~~fg~ylh~Y~i~~aI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (962)
T COG0610 405 IFIGFTGTPIFKEDKDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKI 484 (962)
T ss_pred EEEEEECCCCCCCCCCCHHHHHCCEEEEEECCHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 08975178564022420355517447998652232357633258403123453200124566666999842279999999
Q ss_pred HHCCE--EEEEECCCCCHH---HHHHHHHH-HCCCCCEEEEECCCC----------------------H-----------
Q ss_conf 71885--999826446928---89999986-165464888613467----------------------4-----------
Q gi|254780947|r 832 YRGGQ--SFYVCPRLSDLE---KCYTFLQS-EVPELKIAMAHGQMS----------------------P----------- 872 (1187)
Q Consensus 832 ~RgGQ--vf~v~nrv~~i~---~~~~~l~~-l~p~~~i~vaHGqm~----------------------~----------- 872 (1187)
T Consensus 485 ~k~~~~~~~~~~~~~r~~~~a~~~~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 564 (962)
T COG0610 485 KKKTKNLEFLAMLAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFE 564 (962)
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99875556875144889999999999998611558359999841687877678887751556665300528999861322
Q ss_pred -------------HHHHHHHHH--HHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCCC--C
Q ss_conf -------------789999999--96388757976102003633223326676250235886045532210356767--3
Q gi|254780947|r 873 -------------KNLEDKMNA--FYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIA--S 935 (1187)
Q Consensus 873 -------------~~le~~m~~--F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~--a 935 (1187)
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~r~~~~~d~~kllIV~dMlLTGFDaP~L~TmYvDK~--Lk~H~L~QAisRtNR~~~~~K~ 642 (962)
T COG0610 565 TDFDKKQSHAKLKDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLYVDKP--LKYHNLIQAISRTNRVFPGKKK 642 (962)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCEEEECCC--CCCCHHHHHHHHHCCCCCCCCC
T ss_conf 32023445577777765332321275778768999776204677542012674455--4433189999886458878888
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 6999966888889889999999997255
Q gi|254780947|r 936 FALFLLPENRPLTAAAQKRLRILQSLNT 963 (1187)
Q Consensus 936 yayl~~~~~~~l~~~a~kRL~ai~~~~~ 963 (1187)
T Consensus 643 ~G~IVDf--~---g~~e~~~~Al~~y~~ 665 (962)
T COG0610 643 FGLIVDF--R---GLKEALKKALKLYSN 665 (962)
T ss_pred CCEEEEC--C---CHHHHHHHHHHHHHH
T ss_conf 9579978--1---469999999999751