HHsearch alignment for GI: 254780947 and conserved domain: COG1111

>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair].
Probab=99.76  E-value=2.5e-15  Score=136.81  Aligned_cols=289  Identities=25%  Similarity=0.304  Sum_probs=199.2

Q ss_pred             CEEEECCCCCCHHHHHHHH-HHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCC
Q ss_conf             1443166543248999999-987511275499982436655589999998606789833541066630256777753122
Q gi|254780947|r  648 DRLICGDVGFGKTEIALRA-AFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITE  726 (1187)
Q Consensus       648 DRLiCGDVGfGKTEVA~RA-afkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~  726 (1187)
T Consensus        31 NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~----  106 (542)
T COG1111          31 NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWA----  106 (542)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCHHHEEEECCCCCHHHHHHHHH----
T ss_conf             8389952875079999999999987458848996589517999999999985898433231117778688999875----


Q ss_pred             CCCEEEEECHHHHCCC-----CCCCCCCEEEEECHHHHH------HHHHHHHHHCCCCCCEEEEECCCC---------CH
Q ss_conf             5760898520654278-----520236569972223300------888998863167884899953534---------08
Q gi|254780947|r  727 GQVDIVIGTHALLNPK-----ITFANLGLIIIDEEQHFG------VKHKEALKETHTGVHVLTLSATPI---------PR  786 (1187)
Q Consensus       727 G~idiviGTH~ll~~~-----v~f~~LgLliiDEEqrFG------V~~Ke~lk~~~~~vdvLtlsATPI---------PR  786 (1187)
T Consensus       107 -~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~-~k~~~ilgLTASPGs~~ekI~eV~~  184 (542)
T COG1111         107 -KKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRS-AKNPLILGLTASPGSDLEKIQEVVE  184 (542)
T ss_pred             -HCCEEEECCHHHHHHHHCCCCCHHHCEEEEECHHHHCCCCCHHHHHHHHHHHH-CCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf             -17789956387776876176676780589862355413760699999999982-5684379872389998799999998


Q ss_pred             HHHH----------------------------------------------HHHCCCCCCEEECCC-CC----------CC
Q ss_conf             8999----------------------------------------------971222541220157-88----------77
Q gi|254780947|r  787 TLQL----------------------------------------------AITGVRELSLISMPP-IN----------RI  809 (1187)
Q Consensus       787 TL~m----------------------------------------------sl~g~rd~S~i~tpP-~~----------R~  809 (1187)
T Consensus       185 nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~  264 (542)
T COG1111         185 NLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRL  264 (542)
T ss_pred             HCCCCEEEEECCCCCCHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHH
T ss_conf             37954289845788517775140424899636858999999999999999999999769532357310768999999899


Q ss_pred             CEEEEEEECCH---HHHHHHHH------------------------------------------------HHHHHCCEEE
Q ss_conf             53799985797---89899999------------------------------------------------8987188599
Q gi|254780947|r  810 ACRTSISIFDP---LVVRETLM------------------------------------------------REYYRGGQSF  838 (1187)
Q Consensus       810 ~v~T~v~~~~~---~~i~~ai~------------------------------------------------rEl~RgGQvf  838 (1187)
T Consensus       265 ~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~  344 (542)
T COG1111         265 IMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESG  344 (542)
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCC
T ss_conf             86357617888999999999888899999985086999999999998750352077898753820479999999740036


Q ss_pred             EEECC--------------------------CCCHHHHHHHHHHHCCCCC-EEEE---EC---CCCHHHHHHHHHHHHCC
Q ss_conf             98264--------------------------4692889999986165464-8886---13---46747899999999638
Q gi|254780947|r  839 YVCPR--------------------------LSDLEKCYTFLQSEVPELK-IAMA---HG---QMSPKNLEDKMNAFYEG  885 (1187)
Q Consensus       839 ~v~nr--------------------------v~~i~~~~~~l~~l~p~~~-i~va---HG---qm~~~~le~~m~~F~~~  885 (1187)
T Consensus       345 v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~G  424 (542)
T COG1111         345 VEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKG  424 (542)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf             88961899999999997238985599996147589999999985287520688611454556665888999999998657


Q ss_pred             CCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf             87579761020036332233266762502358860455322103567673699996688
Q gi|254780947|r  886 QYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPEN  944 (1187)
Q Consensus       886 ~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~ayayl~~~~~  944 (1187)
T Consensus       425 e~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeI-R~IQR~GRTGR~-r~Grv~vLvt~g  481 (542)
T COG1111         425 EYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEI-RSIQRKGRTGRK-RKGRVVVLVTEG  481 (542)
T ss_pred             CCEEEEECCCCCCCCCCCCCCEEEEECCCCHHH-HHHHHHCCCCCC-CCCEEEEEEECC
T ss_conf             851899812322467887656799956885788-999860744557-797499999658