HHsearch alignment for GI: 254780947 and conserved domain: COG1111
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair].
Probab=99.76 E-value=2.5e-15 Score=136.81 Aligned_cols=289 Identities=25% Similarity=0.304 Sum_probs=199.2
Q ss_pred CEEEECCCCCCHHHHHHHH-HHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 1443166543248999999-987511275499982436655589999998606789833541066630256777753122
Q gi|254780947|r 648 DRLICGDVGFGKTEIALRA-AFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITE 726 (1187)
Q Consensus 648 DRLiCGDVGfGKTEVA~RA-afkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~ 726 (1187)
T Consensus 31 NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~---- 106 (542)
T COG1111 31 NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWA---- 106 (542)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCHHHEEEECCCCCHHHHHHHHH----
T ss_conf 8389952875079999999999987458848996589517999999999985898433231117778688999875----
Q ss_pred CCCEEEEECHHHHCCC-----CCCCCCCEEEEECHHHHH------HHHHHHHHHCCCCCCEEEEECCCC---------CH
Q ss_conf 5760898520654278-----520236569972223300------888998863167884899953534---------08
Q gi|254780947|r 727 GQVDIVIGTHALLNPK-----ITFANLGLIIIDEEQHFG------VKHKEALKETHTGVHVLTLSATPI---------PR 786 (1187)
Q Consensus 727 G~idiviGTH~ll~~~-----v~f~~LgLliiDEEqrFG------V~~Ke~lk~~~~~vdvLtlsATPI---------PR 786 (1187)
T Consensus 107 -~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~-~k~~~ilgLTASPGs~~ekI~eV~~ 184 (542)
T COG1111 107 -KKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRS-AKNPLILGLTASPGSDLEKIQEVVE 184 (542)
T ss_pred -HCCEEEECCHHHHHHHHCCCCCHHHCEEEEECHHHHCCCCCHHHHHHHHHHHH-CCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf -17789956387776876176676780589862355413760699999999982-5684379872389998799999998
Q ss_pred HHHH----------------------------------------------HHHCCCCCCEEECCC-CC----------CC
Q ss_conf 8999----------------------------------------------971222541220157-88----------77
Q gi|254780947|r 787 TLQL----------------------------------------------AITGVRELSLISMPP-IN----------RI 809 (1187)
Q Consensus 787 TL~m----------------------------------------------sl~g~rd~S~i~tpP-~~----------R~ 809 (1187)
T Consensus 185 nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~ 264 (542)
T COG1111 185 NLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRL 264 (542)
T ss_pred HCCCCEEEEECCCCCCHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHH
T ss_conf 37954289845788517775140424899636858999999999999999999999769532357310768999999899
Q ss_pred CEEEEEEECCH---HHHHHHHH------------------------------------------------HHHHHCCEEE
Q ss_conf 53799985797---89899999------------------------------------------------8987188599
Q gi|254780947|r 810 ACRTSISIFDP---LVVRETLM------------------------------------------------REYYRGGQSF 838 (1187)
Q Consensus 810 ~v~T~v~~~~~---~~i~~ai~------------------------------------------------rEl~RgGQvf 838 (1187)
T Consensus 265 ~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~ 344 (542)
T COG1111 265 IMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESG 344 (542)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCC
T ss_conf 86357617888999999999888899999985086999999999998750352077898753820479999999740036
Q ss_pred EEECC--------------------------CCCHHHHHHHHHHHCCCCC-EEEE---EC---CCCHHHHHHHHHHHHCC
Q ss_conf 98264--------------------------4692889999986165464-8886---13---46747899999999638
Q gi|254780947|r 839 YVCPR--------------------------LSDLEKCYTFLQSEVPELK-IAMA---HG---QMSPKNLEDKMNAFYEG 885 (1187)
Q Consensus 839 ~v~nr--------------------------v~~i~~~~~~l~~l~p~~~-i~va---HG---qm~~~~le~~m~~F~~~ 885 (1187)
T Consensus 345 v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~G 424 (542)
T COG1111 345 VEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKG 424 (542)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 88961899999999997238985599996147589999999985287520688611454556665888999999998657
Q ss_pred CCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 87579761020036332233266762502358860455322103567673699996688
Q gi|254780947|r 886 QYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPEN 944 (1187)
Q Consensus 886 ~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~ayayl~~~~~ 944 (1187)
T Consensus 425 e~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeI-R~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 425 EYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEI-RSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred CCEEEEECCCCCCCCCCCCCCEEEEECCCCHHH-HHHHHHCCCCCC-CCCEEEEEEECC
T ss_conf 851899812322467887656799956885788-999860744557-797499999658