HHsearch alignment for GI: 254780947 and conserved domain: COG1198
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair].
Probab=96.20 E-value=0.037 Score=35.40 Aligned_cols=369 Identities=14% Similarity=0.161 Sum_probs=184.2
Q ss_pred HCCCHHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHHHH------CCCCCCCCCCCHHHHHCCCCCCEEEEECC
Q ss_conf 018589999999999867982999958----94589999986776------48873323452245520466847999810
Q gi|254780947|r 390 SGGRFDKFLSHVAQQAQKGIKTIISAS----SQGALQHLIHLIES------HGFKKIKKINTLTEINSLLKEEIAAVILP 459 (1187)
Q Consensus 390 ~~g~l~~L~~~I~~~~k~g~rViI~a~----s~~~~eRL~elL~e------~gI~~~~~~~~~~~~~~~~~~~i~i~~~~ 459 (1187)
T Consensus 227 GSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~---~~G~~~vVIGt 303 (730)
T COG1198 227 GSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRA---RRGEARVVIGT 303 (730)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHH---HCCCCEEEEEE
T ss_conf 885899999999999975987999956534569999999998678745314657927899999998---55971599971
Q ss_pred CCCCC---CCCCEEEEE-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEECCCCCEEEECCCCCCCCCCCCCEE
Q ss_conf 44687---466568871-20013731112212222222110122444032351120355423311231014566666359
Q gi|254780947|r 460 INQGF---ETKHMILVT-ETDLLGKKIARRVVRKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCL 535 (1187)
Q Consensus 460 L~~GF---~~~kl~vIT-E~EIFG~k~~~r~~rkk~~~~~~i~dl~eL~~GDyVVH~dHGIGrY~GLe~l~v~G~~~DyL 535 (1187)
T Consensus 304 RSAlF~Pf~~LGLIIvDEEHD~sYKq-----~~~prYhARdvA~---------~Ra~~~~~pvvLgSATPSLES~~~~-- 367 (730)
T COG1198 304 RSALFLPFKNLGLIIVDEEHDSSYKQ-----EDGPRYHARDVAV---------LRAKKENAPVVLGSATPSLESYANA-- 367 (730)
T ss_pred CHHHCCCHHHCCEEEEECCCCCCCCC-----CCCCCCCHHHHHH---------HHHHHCCCCEEEECCCCCHHHHHHH--
T ss_conf 22330723125769970245643247-----7777767899999---------9988609988982688778999866--
Q ss_pred EEEECCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH-----HCC
Q ss_conf 9998699879966675211110036788853234340348999999999999999999999-----998874-----015
Q gi|254780947|r 536 ELHYADNAKLFVPVENIDLISRYSTEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDI-----AAKRAI-----HSV 605 (1187)
Q Consensus 536 ~IeYa~~DkLYVPv~~l~lIskYg~~~~~p~L~kLGg~~W~k~K~Kakk~v~diA~eLl~l-----yA~R~~-----~~g 605 (1187)
T Consensus 368 ----~~g-----~y~~~~L~~R~~-~a~~p~v~iiDmr~e~~~~~~~------lS~~Ll~~i~~~l~~geQ~llflnRRG 431 (730)
T COG1198 368 ----ESG-----KYKLLRLTNRAG-RARLPRVEIIDMRKEPLETGRS------LSPALLEAIRKTLERGEQVLLFLNRRG 431 (730)
T ss_pred ----HCC-----CEEEEECCCCCC-CCCCCCCEEEECCCCCCCCCCC------CCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf ----538-----558997035455-5678762587356665546775------799999999999842986899971677
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHH
Q ss_conf 67787846789899848888874489999999876059885414431665432489999999875112754999824366
Q gi|254780947|r 606 PPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTL 685 (1187)
Q Consensus 606 ~~f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTi 685 (1187)
T Consensus 432 ys~~-------l~C~~Cg~v~~Cp~Cd~------~lt~H~~~~~L~CH~Cg~~~-----~~p~~Cp~Cgs~--~L~~~G~ 491 (730)
T COG1198 432 YAPL-------LLCRDCGYIAECPNCDS------PLTLHKATGQLRCHYCGYQE-----PIPQSCPECGSE--HLRAVGP 491 (730)
T ss_pred CCCE-------EECCCCCCCCCCCCCCC------CEEEECCCCEEEECCCCCCC-----CCCCCCCCCCCC--EEEEECC
T ss_conf 6540-------04256898024899995------12786479806707799989-----988779899997--3699646
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEECCCCCC--HHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEE-ECHHHHH--
Q ss_conf 55589999998606789833541066630--256777753122576089852065427852023656997-2223300--
Q gi|254780947|r 686 LVRQHFRLFSERFQGFSVRIASISRFVQT--KEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIII-DEEQHFG-- 760 (1187)
Q Consensus 686 La~QH~~tf~~Rf~~~pv~i~~lsRf~~~--~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLlii-DEEqrFG-- 760 (1187)
T Consensus 492 GterieeeL~~~FP~~r--v~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQm-iaKG~~fp~vtLVgvl~aD~~L~~~ 568 (730)
T COG1198 492 GTERIEEELKRLFPGAR--IIRIDSDTTRRKGALEDLLDQFANGEADILIGTQM-IAKGHDFPNVTLVGVLDADTGLGSP 568 (730)
T ss_pred CHHHHHHHHHHHCCCCC--EEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCHH-HHCCCCCCCCEEEEEEECHHHHCCC
T ss_conf 19999999998789994--79984666664356899999975799886634166-6427886663189999631431588
Q ss_pred -HHHHHHHHHCC-----------CCCCEEEEECCCCCHHHHHHHHCC------CCCC---EEECCCCCCCCEEEEEE
Q ss_conf -88899886316-----------788489995353408899997122------2541---22015788775379998
Q gi|254780947|r 761 -VKHKEALKETH-----------TGVHVLTLSATPIPRTLQLAITGV------RELS---LISMPPINRIACRTSIS 816 (1187)
Q Consensus 761 -V~~Ke~lk~~~-----------~~vdvLtlsATPIPRTL~msl~g~------rd~S---~i~tpP~~R~~v~T~v~ 816 (1187)
T Consensus 569 DfRAsEr~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~~dy~~F~~~El~~Rk~~~~PPf~~l~~v~~~~ 645 (730)
T COG1198 569 DFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKRGDYEAFYEQELAERKELGLPPFSRLAAVIASA 645 (730)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHEEEEECC
T ss_conf 84357899999999975532678898699996799857999998669999999999988861899706544667337