HHsearch alignment for GI: 254780947 and conserved domain: COG1201

>COG1201 Lhr Lhr-like helicases [General function prediction only].
Probab=99.53  E-value=2.1e-10  Score=98.87  Aligned_cols=318  Identities=20%  Similarity=0.221  Sum_probs=237.5

Q ss_pred             CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC--------CEEEEEEC
Q ss_conf             8467898998488888744899999998760598854144316654324899999998751127--------54999824
Q gi|254780947|r  611 SQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNG--------LQVAVIAP  682 (1187)
Q Consensus       611 d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~g--------kQvavlvP  682 (1187)
T Consensus         9 ~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G------~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsP   81 (814)
T COG1201           9 DPRVREWFKRK-FTSLTPPQRYAIPEIHSG------ENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISP   81 (814)
T ss_pred             CHHHHHHHHHH-CCCCCHHHHHHHHHHHCC------CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
T ss_conf             89999999985-089987899999998589------84699868999737999999999998606888888569999570


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECH----HHHCC-C--CCCCCCCEEEEEC
Q ss_conf             366555899999986067898335410666302567777531225760898520----65427-8--5202365699722
Q gi|254780947|r  683 TTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTH----ALLNP-K--ITFANLGLIIIDE  755 (1187)
Q Consensus       683 TTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH----~ll~~-~--v~f~~LgLliiDE  755 (1187)
T Consensus        82 LkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~----PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDE  157 (814)
T COG1201          82 LKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKN----PPHILITTPESLAILLNSPKFRELLRDVRYVIVDE  157 (814)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHCCCC----CCCEEEECHHHHHHHHCCHHHHHHHCCCCEEEEEH
T ss_conf             78887899999999999759844442287886776304699----99689958348999836888999860780999512


Q ss_pred             HHHHHHHH--------HHHHHHCCCCCCEEEEECCCCCHH-HHHHHHCCC-CCCEEECCCCCCCCEEEEEEECC------
Q ss_conf             23300888--------998863167884899953534088-999971222-54122015788775379998579------
Q gi|254780947|r  756 EQHFGVKH--------KEALKETHTGVHVLTLSATPIPRT-LQLAITGVR-ELSLISMPPINRIACRTSISIFD------  819 (1187)
Q Consensus       756 EqrFGV~~--------Ke~lk~~~~~vdvLtlsATPIPRT-L~msl~g~r-d~S~i~tpP~~R~~v~T~v~~~~------  819 (1187)
T Consensus       158 iHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~  237 (814)
T COG1201         158 IHALAESKRGVQLALSLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEE  237 (814)
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEHHCCCCHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCC
T ss_conf             54543456531343329999851755379754021588899999854789842999745677531799804775000262


Q ss_pred             -HHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEEC
Q ss_conf             -7898999998987188599982644692889999986165464888613467478999999996388757976102003
Q gi|254780947|r  820 -PLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVES  898 (1187)
Q Consensus       820 -~~~i~~ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEs  898 (1187)
T Consensus       238 ~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~-~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLEL  316 (814)
T COG1201         238 LWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGP-DIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLEL  316 (814)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHCC-CCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf             46789999999996168589997272789999999987268-75565316665778999999986688629998064220


Q ss_pred             CCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCCCCEE---EEEECCC
Q ss_conf             633223326676250235886045532210356767369---9996688
Q gi|254780947|r  899 GLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFA---LFLLPEN  944 (1187)
Q Consensus       899 GlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~aya---yl~~~~~  944 (1187)
T Consensus       317 GIDiG~vdlVIq~~SP~-sV~r~lQ---RiGRsgHr~~~~Skg~ii~~~  361 (814)
T COG1201         317 GIDIGDIDLVIQLGSPK-SVNRFLQ---RIGRAGHRLGEVSKGIIIAED  361 (814)
T ss_pred             CCCCCCCEEEEEECCCH-HHHHHHH---HCCCCCCCCCCCCCEEEEECC
T ss_conf             50247742999817938-8888868---503146656886427998167