HHsearch alignment for GI: 254780947 and conserved domain: COG1201
>COG1201 Lhr Lhr-like helicases [General function prediction only].
Probab=99.53 E-value=2.1e-10 Score=98.87 Aligned_cols=318 Identities=20% Similarity=0.221 Sum_probs=237.5
Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC--------CEEEEEEC
Q ss_conf 8467898998488888744899999998760598854144316654324899999998751127--------54999824
Q gi|254780947|r 611 SQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNG--------LQVAVIAP 682 (1187)
Q Consensus 611 d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~g--------kQvavlvP 682 (1187)
T Consensus 9 ~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G------~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsP 81 (814)
T COG1201 9 DPRVREWFKRK-FTSLTPPQRYAIPEIHSG------ENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISP 81 (814)
T ss_pred CHHHHHHHHHH-CCCCCHHHHHHHHHHHCC------CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
T ss_conf 89999999985-089987899999998589------84699868999737999999999998606888888569999570
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECH----HHHCC-C--CCCCCCCEEEEEC
Q ss_conf 366555899999986067898335410666302567777531225760898520----65427-8--5202365699722
Q gi|254780947|r 683 TTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTH----ALLNP-K--ITFANLGLIIIDE 755 (1187)
Q Consensus 683 TTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH----~ll~~-~--v~f~~LgLliiDE 755 (1187)
T Consensus 82 LkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~----PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDE 157 (814)
T COG1201 82 LKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKN----PPHILITTPESLAILLNSPKFRELLRDVRYVIVDE 157 (814)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHCCCC----CCCEEEECHHHHHHHHCCHHHHHHHCCCCEEEEEH
T ss_conf 78887899999999999759844442287886776304699----99689958348999836888999860780999512
Q ss_pred HHHHHHHH--------HHHHHHCCCCCCEEEEECCCCCHH-HHHHHHCCC-CCCEEECCCCCCCCEEEEEEECC------
Q ss_conf 23300888--------998863167884899953534088-999971222-54122015788775379998579------
Q gi|254780947|r 756 EQHFGVKH--------KEALKETHTGVHVLTLSATPIPRT-LQLAITGVR-ELSLISMPPINRIACRTSISIFD------ 819 (1187)
Q Consensus 756 EqrFGV~~--------Ke~lk~~~~~vdvLtlsATPIPRT-L~msl~g~r-d~S~i~tpP~~R~~v~T~v~~~~------ 819 (1187)
T Consensus 158 iHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~ 237 (814)
T COG1201 158 IHALAESKRGVQLALSLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEE 237 (814)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEHHCCCCHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCC
T ss_conf 54543456531343329999851755379754021588899999854789842999745677531799804775000262
Q ss_pred -HHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEEC
Q ss_conf -7898999998987188599982644692889999986165464888613467478999999996388757976102003
Q gi|254780947|r 820 -PLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVES 898 (1187)
Q Consensus 820 -~~~i~~ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEs 898 (1187)
T Consensus 238 ~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~-~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLEL 316 (814)
T COG1201 238 LWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGP-DIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLEL 316 (814)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHCC-CCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf 46789999999996168589997272789999999987268-75565316665778999999986688629998064220
Q ss_pred CCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCCCCEE---EEEECCC
Q ss_conf 633223326676250235886045532210356767369---9996688
Q gi|254780947|r 899 GLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFA---LFLLPEN 944 (1187)
Q Consensus 899 GlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~aya---yl~~~~~ 944 (1187)
T Consensus 317 GIDiG~vdlVIq~~SP~-sV~r~lQ---RiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 317 GIDIGDIDLVIQLGSPK-SVNRFLQ---RIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CCCCCCCEEEEEECCCH-HHHHHHH---HCCCCCCCCCCCCCEEEEECC
T ss_conf 50247742999817938-8888868---503146656886427998167