HHsearch alignment for GI: 254780947 and conserved domain: COG1643
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair].
Probab=98.70 E-value=6.3e-06 Score=64.43 Aligned_cols=376 Identities=18% Similarity=0.200 Sum_probs=253.3
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH-CCCCEEEEEECHHHHHHHHHHH
Q ss_conf 898998488888744899999998760598854144316654324899999998751-1275499982436655589999
Q gi|254780947|r 615 YSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAV-MNGLQVAVIAPTTLLVRQHFRL 693 (1187)
Q Consensus 615 ~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav-~~gkQvavlvPTTiLa~QH~~t 693 (1187)
T Consensus 42 ~~~~~~~LPv~~~~~~i~~------ai~~~~v--vii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~R 113 (845)
T COG1643 42 ILEYRSGLPVTAVRDEILK------AIEQNQV--VIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAER 113 (845)
T ss_pred HHHCCCCCCCHHHHHHHHH------HHHHCCE--EEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHH
T ss_conf 4322213981888999999------9986978--9986799887587889999960016687599658438999999999
Q ss_pred HHHHHCC-CCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEEECHHH------HHHHH-HH
Q ss_conf 9986067-8983354106663025677775312257608985206542785202365699722233------00888-99
Q gi|254780947|r 694 FSERFQG-FSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQH------FGVKH-KE 765 (1187)
Q Consensus 694 f~~Rf~~-~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLliiDEEqr------FGV~~-Ke 765 (1187)
T Consensus 114 vAeel~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiL------lrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~ 187 (845)
T COG1643 114 VAEELGEKLGETVGYSIRFESKVSPRTRIKVMTDGIL------LREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKD 187 (845)
T ss_pred HHHHHCCCCCCEEEEEEEEECCCCCCCEEEEECCHHH------HHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHH
T ss_conf 9998389867654379996226787714689514799------9998438020458779970133556888999999999
Q ss_pred HHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEE-C--C---HHHHHHHHHHHHH-HCCEEE
Q ss_conf 8863167884899953534088999971222541220157887753799985-7--9---7898999998987-188599
Q gi|254780947|r 766 ALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISI-F--D---PLVVRETLMREYY-RGGQSF 838 (1187)
Q Consensus 766 ~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R~~v~T~v~~-~--~---~~~i~~ai~rEl~-RgGQvf 838 (1187)
T Consensus 188 ~~~~rr~DLKiIimSATld~~rfs~~f~~---apvi~-i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdIL 263 (845)
T COG1643 188 LLARRRDDLKLIIMSATLDAERFSAYFGN---APVIE-IEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSIL 263 (845)
T ss_pred HHHHCCCCCEEEEEECCCCHHHHHHHCCC---CCEEE-ECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 98646887059997253588999976289---98787-558866447886577775136999999999996368999889
Q ss_pred EEECCCCCHHHHHHHHHH--HCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEE-----
Q ss_conf 982644692889999986--1654648886134674789999999963887579761020036332233266762-----
Q gi|254780947|r 839 YVCPRLSDLEKCYTFLQS--EVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQ----- 911 (1187)
Q Consensus 839 ~v~nrv~~i~~~~~~l~~--l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~----- 911 (1187)
T Consensus 264 vFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~ 343 (845)
T COG1643 264 VFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKE 343 (845)
T ss_pred EECCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCEEEEECCEEECCEEECCEEEEEECCCCCC
T ss_conf 97786899999999997324478838940403599899986628788886049997514001311578589984882521
Q ss_pred --CHHHCCCCHHH----------HHHHHCCCCCCCCEEEEEECC-------CCCCCHHHHHHHHH-HHHHCCCCHH----
Q ss_conf --50235886045----------532210356767369999668-------88889889999999-9972556524----
Q gi|254780947|r 912 --RADMFGLAQLY----------QLRGRVGRSKIASFALFLLPE-------NRPLTAAAQKRLRI-LQSLNTLGAG---- 967 (1187)
Q Consensus 912 --~ad~~GLaqly----------QlrGRVGRs~~~ayayl~~~~-------~~~l~~~a~kRL~a-i~~~~~lGsG---- 967 (1187)
T Consensus 344 ~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~~~~~~~~t~PEIlrtdLs~~vL~l~~~G~~~d~~ 422 (845)
T COG1643 344 KRYDPRTGLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEEDFLAFPEFTLPEILRTDLSGLVLQLKSLGIGQDIA 422 (845)
T ss_pred CCCCCCCCCEEEEEEEECHHHHHHHCCCCCCC-CCCEEEEECCHHHHHHCCCCCCHHHHHCCCHHHHHHHHHCCCCCCCC
T ss_conf 00351348526667875053233434554577-78528994479998736227991775335289999999669988876
Q ss_pred ------------HHHHHHHHHHCCCCCCCCC--CCCCCHHHHHHHHHH-HHHHHHHH
Q ss_conf ------------8999999851163000461--115538983389999-99999999
Q gi|254780947|r 968 ------------FQLASYDLDIRGTGNLLGE--EQSGHIREIGFELYQ-KMLEETVA 1009 (1187)
Q Consensus 968 ------------f~iA~~DleiRGaG~llG~--~QsG~i~~vG~~ly~-~ml~~av~ 1009 (1187)
T Consensus 423 ~f~fld~P~~~~i~~A~~~L~~LGAld~~g~LT~lG~~ms~lpldprLA~mLl~a~~ 479 (845)
T COG1643 423 PFPFLDPPPEAAIQAALTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPE 479 (845)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCC
T ss_conf 686778997589999999999748868888777889999868998388899885124