HHsearch alignment for GI: 254780947 and conserved domain: COG4098
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair].
Probab=99.78 E-value=3e-16 Score=143.98 Aligned_cols=316 Identities=22% Similarity=0.343 Sum_probs=233.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 88874489999999876059885414431665432489999999875112754999824366555899999986067898
Q gi|254780947|r 624 HVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSV 703 (1187)
Q Consensus 624 yeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv 703 (1187)
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~--lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~--~ 171 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDT--LVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSN--C 171 (441)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCE--EEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCC--C
T ss_conf 532724789999999998715768--999742798510169999999965986998468610117778999976214--9
Q ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCC-CCEEEEECHHHHHHHHHHHH-----HHCCCCCCEE
Q ss_conf 33541066630256777753122576089852065427852023-65699722233008889988-----6316788489
Q gi|254780947|r 704 RIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFAN-LGLIIIDEEQHFGVKHKEAL-----KETHTGVHVL 777 (1187)
Q Consensus 704 ~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~-LgLliiDEEqrFGV~~Ke~l-----k~~~~~vdvL 777 (1187)
T Consensus 172 ~I~~Lyg~S~~~fr---------~p-lvVaTtHQLl----rFk~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~I 237 (441)
T COG4098 172 DIDLLYGDSDSYFR---------AP-LVVATTHQLL----RFKQAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATI 237 (441)
T ss_pred CEEEEECCCCHHCC---------CC-EEEEEHHHHH----HHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEE
T ss_conf 86667258713133---------44-7997668888----8886433899830245656678889999997512367369
Q ss_pred EEECCCCCHHHHHH-HHCCCCCCEEECCC-CCCCCEEEEE--EECCHHHHH--------HHHHHHHHHCCEEEEEECCCC
Q ss_conf 99535340889999-71222541220157-8877537999--857978989--------999989871885999826446
Q gi|254780947|r 778 TLSATPIPRTLQLA-ITGVRELSLISMPP-INRIACRTSI--SIFDPLVVR--------ETLMREYYRGGQSFYVCPRLS 845 (1187)
Q Consensus 778 tlsATPIPRTL~ms-l~g~rd~S~i~tpP-~~R~~v~T~v--~~~~~~~i~--------~ai~rEl~RgGQvf~v~nrv~ 845 (1187)
T Consensus 238 ylTATp-~k~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~ 316 (441)
T COG4098 238 YLTATP-TKKLERKILKGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIE 316 (441)
T ss_pred EEECCC-HHHHHHHHHHCCEEEEECCHHHCCCCCCCCCEEEECCHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 996488-0788887540775676344654389989874288644777766444778999999998743882899925058
Q ss_pred CHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHH--CCCCHHHH
Q ss_conf 9288999998616546488861346747899999999638875797610200363322332667625023--58860455
Q gi|254780947|r 846 DLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADM--FGLAQLYQ 923 (1187)
Q Consensus 846 ~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~--~GLaqlyQ 923 (1187)
T Consensus 317 ~~eq~a~~lk~~~~~~~i~~Vhs~d-~~R~EkV-~~fR~G~~~lLiTTTILERGVTfp~vdV~Vl-gaeh~vfTesaLVQ 393 (441)
T COG4098 317 TMEQVAAALKKKLPKETIASVHSED-QHRKEKV-EAFRDGKITLLITTTILERGVTFPNVDVFVL-GAEHRVFTESALVQ 393 (441)
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCC-CCHHHHH-HHHHCCCEEEEEEEEHHHCCCCCCCCEEEEE-CCCCCCCCHHHHHH
T ss_conf 8999999998618864215653367-0178999-9987586389998440332664356239995-47764201889999
Q ss_pred HHHHCCCCCCCCE---EEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 3221035676736---99996688888988999999999725565
Q gi|254780947|r 924 LRGRVGRSKIASF---ALFLLPENRPLTAAAQKRLRILQSLNTLG 965 (1187)
Q Consensus 924 lrGRVGRs~~~ay---ayl~~~~~~~l~~~a~kRL~ai~~~~~lG 965 (1187)
T Consensus 394 IaGRvGRs~~~PtGdv~FFH~G~----skaM~~A~keIk~MN~lg 434 (441)
T COG4098 394 IAGRVGRSLERPTGDVLFFHYGK----SKAMKQARKEIKEMNKLG 434 (441)
T ss_pred HHHHCCCCCCCCCCCEEEEECCC----HHHHHHHHHHHHHHHHHH
T ss_conf 75231678768987589996463----389999999999998876