HHsearch alignment for GI: 254780947 and conserved domain: COG4098

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair].

Probab=95.19  E-value=0.13  Score=31.15  Aligned_cols=89  Identities=18%  Similarity=0.299  Sum_probs=71.3

Q ss_pred             HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCC
Q ss_conf             99987511275499982436655589999998606789833541066630256777753122576089852065427852
Q gi|254780947|r  665 RAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKIT  744 (1187)
Q Consensus       665 RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~  744 (1187)
T Consensus       296 ~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~--~~i~~Vh--s~d~~R~EkV~~fR~G~~~lLiTTT-ILERGVT  370 (441)
T COG4098         296 RWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPK--ETIASVH--SEDQHRKEKVEAFRDGKITLLITTT-ILERGVT  370 (441)
T ss_pred             HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCC--CCEEEEE--CCCCCHHHHHHHHHCCCEEEEEEEE-HHHCCCC
T ss_conf             999998743882899925058899999999861886--4215653--3670178999998758638999844-0332664


Q ss_pred             CCCCCEEEEECHHH
Q ss_conf             02365699722233
Q gi|254780947|r  745 FANLGLIIIDEEQH  758 (1187)
Q Consensus       745 f~~LgLliiDEEqr  758 (1187)
T Consensus       371 fp~vdV~Vlgaeh~  384 (441)
T COG4098         371 FPNVDVFVLGAEHR  384 (441)
T ss_pred             CCCCEEEEECCCCC
T ss_conf             35623999547764