HHsearch alignment for GI: 254780947 and conserved domain: COG4581
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair].
Probab=98.82 E-value=2.6e-06 Score=67.36 Aligned_cols=306 Identities=21% Similarity=0.282 Sum_probs=212.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHH
Q ss_conf 89899848888874489999999876059885414431665432489999999875112754999824366555899999
Q gi|254780947|r 615 YSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLF 694 (1187)
Q Consensus 615 ~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf 694 (1187)
T Consensus 109 ~~~~~~~~~F~LD~fQ~~a~~~Ler~e------sVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl 182 (1041)
T COG4581 109 LAPPAREYPFELDPFQQEAIAILERGE------SVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDL 182 (1041)
T ss_pred CCCHHHHCCCCCCHHHHHHHHHHHCCC------CEEEECCCCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHH
T ss_conf 683787489896789999999984799------57997337898555999999999871894486163066420679999
Q ss_pred HHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHC-----CCCCCCCCCEEEEECHHHH-----HHHHH
Q ss_conf 9860678983354106663025677775312257608985206542-----7852023656997222330-----08889
Q gi|254780947|r 695 SERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLN-----PKITFANLGLIIIDEEQHF-----GVKHK 764 (1187)
Q Consensus 695 ~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~-----~~v~f~~LgLliiDEEqrF-----GV~~K 764 (1187)
T Consensus 183 ~~~fgdv~~~vGL~TGDv~-----------IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWE 251 (1041)
T COG4581 183 LAKFGDVADMVGLMTGDVS-----------INPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWE 251 (1041)
T ss_pred HHHHHHHHHHCCCEECCEE-----------ECCCCCEEEEEHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCHHHH
T ss_conf 9986005654040105434-----------27999668860999999862586101353068887666504632212578
Q ss_pred HHHHHCCCCCCEEEEECCCCCHHHHHHH--H--CCCCCCEEECCCCCCCCEEEEEEEC-------CHH--H-------HH
Q ss_conf 9886316788489995353408899997--1--2225412201578877537999857-------978--9-------89
Q gi|254780947|r 765 EALKETHTGVHVLTLSATPIPRTLQLAI--T--GVRELSLISMPPINRIACRTSISIF-------DPL--V-------VR 824 (1187)
Q Consensus 765 e~lk~~~~~vdvLtlsATPIPRTL~msl--~--g~rd~S~i~tpP~~R~~v~T~v~~~-------~~~--~-------i~ 824 (1187)
T Consensus 252 E~Ii~lP~~v~~v~LSAT-v~N~~EF~~Wi~~~~~~~~~vv~t~-~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~ 329 (1041)
T COG4581 252 EVIILLPDHVRFVFLSAT-VPNAEEFAEWIQRVHSQPIHVVSTE-HRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSAN 329 (1041)
T ss_pred HHHHHCCCCCCEEEEECC-CCCHHHHHHHHHHCCCCCEEEEEEC-CCCCCEEEEEECCCCEEEEECCCCCCHHHCCHHHH
T ss_conf 999866777768999678-8987999999974037874899506-88897179886587514535456530111343343
Q ss_pred HHHH------HHHHHCCEEEE------------EECC-------C---------------------------------CC
Q ss_conf 9999------89871885999------------8264-------4---------------------------------69
Q gi|254780947|r 825 ETLM------REYYRGGQSFY------------VCPR-------L---------------------------------SD 846 (1187)
Q Consensus 825 ~ai~------rEl~RgGQvf~------------v~nr-------v---------------------------------~~ 846 (1187)
T Consensus 330 ~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~ 409 (1041)
T COG4581 330 RSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEE 409 (1041)
T ss_pred HHHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHCCCCCCCCCC
T ss_conf 34302200013567654321233334567766565530577766544037852899973651899998750364215882
Q ss_pred HHH-----HHHHHHHHCCCC----------------CEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCC
Q ss_conf 288-----999998616546----------------48886134674789999999963887579761020036332233
Q gi|254780947|r 847 LEK-----CYTFLQSEVPEL----------------KIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKA 905 (1187)
Q Consensus 847 i~~-----~~~~l~~l~p~~----------------~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~a 905 (1187)
T Consensus 410 ~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmP-a 488 (1041)
T COG4581 410 KERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMP-A 488 (1041)
T ss_pred HHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEEHHHHHHHCCCC-C
T ss_conf 788899999999853472021275009999998760345402450368999999998604305775333464015784-0
Q ss_pred CEEEEECHHHCC--------CCHHHHHHHHCCCCCCC--CEEEEE
Q ss_conf 266762502358--------86045532210356767--369999
Q gi|254780947|r 906 NTMIVQRADMFG--------LAQLYQLRGRVGRSKIA--SFALFL 940 (1187)
Q Consensus 906 NTiii~~ad~~G--------LaqlyQlrGRVGRs~~~--ayayl~ 940 (1187)
T Consensus 489 rtvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~ 533 (1041)
T COG4581 489 RTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVI 533 (1041)
T ss_pred CCEEEEEEEEECCCCEEECCHHHHHHHHHHHCCCCCCCCCEEEEE
T ss_conf 013546557754885356581577775444301556546549995