HHsearch alignment for GI: 254780947 and conserved domain: COG4889
>COG4889 Predicted helicase [General function prediction only].
Probab=97.55 E-value=0.011 Score=39.38 Aligned_cols=156 Identities=21% Similarity=0.326 Sum_probs=81.7
Q ss_pred CCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC----CCCHHHHHH-------
Q ss_conf 3234340-3489999999999999999999999988740156778784678989984888----887448999-------
Q gi|254780947|r 566 TLDKLGG-SAWKTRKANLKKRLEDLAQKLVDIAAKRAIHSVPPLMVSQDLYSQFIKRFPH----VETEDQEKA------- 633 (1187)
Q Consensus 566 ~L~kLGg-~~W~k~K~Kakk~v~diA~eLl~lyA~R~~~~g~~f~~d~~~~~eFe~~Fpy----eET~DQ~~A------- 633 (1187)
T Consensus 662 ~v~KvGdR~YwEnw----akdva~IA~tl~~rik-------~L~~k~p~~F~~Fl~sLr~NinesI~edeA~~MlsqHlI 730 (1518)
T COG4889 662 MVTKVGDRNYWENW----AKDVANIARTLINRIK-------LLFGKNPIEFENFLTSLRGNINESIKEDEALDMLSQHLI 730 (1518)
T ss_pred HHHHCCCHHHHHHH----HHHHHHHHHHHHHHHH-------HHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 52522644689988----8889999999999999-------973898899999999986544124787789999997562
Q ss_pred ----HHHHHHHCCC---CCCCCEEE--ECCCCCCH-HH--------HHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHH-
Q ss_conf ----9999876059---88541443--16654324-89--------999999875112754999824366555899999-
Q gi|254780947|r 634 ----IDAVIQDLSS---GRLMDRLI--CGDVGFGK-TE--------IALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLF- 694 (1187)
Q Consensus 634 ----I~eV~~Dmes---~~PMDRLi--CGDVGfGK-TE--------VA~RAafkav~~gkQvavlvPTTiLa~QH~~tf- 694 (1187)
T Consensus 731 TkPiFdALFa~~~qNPvsqam~kmv~~l~~agle~Et~~Le~lYeSVr~rA~~~~sa~~kQ~~--------Ik~LY~~FF 802 (1518)
T COG4889 731 TKPIFDALFAENIQNPVSQAMDKMVDKLSDAGLEGETEDLENLYESVRTRAAEAKSAKSKQEL--------IKNLYNTFF 802 (1518)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH--------HHHHHHHHH
T ss_conf 026789986310468399999999998741344110666888999999887642551027899--------999999999
Q ss_pred HHHHCC---------CCCCE-EEECCCCCCHHHHHHHHHHCCCCCEEE---EEC----HHHHC
Q ss_conf 986067---------89833-541066630256777753122576089---852----06542
Q gi|254780947|r 695 SERFQG---------FSVRI-ASISRFVQTKEAALHKKSITEGQVDIV---IGT----HALLN 740 (1187)
Q Consensus 695 ~~Rf~~---------~pv~i-~~lsRf~~~~e~~~i~~~l~~G~idiv---iGT----H~ll~ 740 (1187)
T Consensus 803 k~aFKkqsE~LGIVyTPiEVVDFIlra~d~vlkkHFg~~l~d~~vhilDpFtGTGtFi~RlL~ 865 (1518)
T COG4889 803 KEAFKKQSEKLGIVYTPIEVVDFILRATDDVLKKHFGTDLNDQSVHILDPFTGTGTFIVRLLS 865 (1518)
T ss_pred HHHHHHHHHHCCEEECCHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHH
T ss_conf 999987676415043146676678885113889871888665770663477874078999999