HHsearch alignment for GI: 254780947 and conserved domain: PRK01297
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional.
Probab=94.89 E-value=0.15 Score=30.60 Aligned_cols=89 Identities=11% Similarity=0.106 Sum_probs=46.5
Q ss_pred CCEEEECCCCCCHHHHHH--HHHHH---C--------CCC-EEEEECCHHHHHHHHHHHHHHCCCC--EEEECCCCCCCC
Q ss_conf 860898037652279999--99986---2--------998-9999299899999999999857998--099857224670
Q gi|254780947|r 15 CKKITLSPVIDGTEGFIL--AEIAR---L--------GLS-LVYICSDERILINLKKILTLVVPDI--RVIIFPAWDCLP 78 (1187)
Q Consensus 15 ~~~i~l~Gl~gs~~alll--a~l~~---~--------~rp-ilvI~~d~~~A~~l~~dL~~f~~~~--~V~~FP~~E~LP 78 (1187)
T Consensus 121 GkDvi~~A~TGSGKTlAyLLPil~~ll~~~~~~~~~~~~p~aLIL~PTRELa~QI~~~~~~L~~~~~l~v~~~------- 193 (472)
T PRK01297 121 GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTF------- 193 (472)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEE-------
T ss_conf 9988998999867999999999999971775101136895299987999999999999999746279769999-------
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCC
Q ss_conf 10048998999999999999841244688769995667852369
Q gi|254780947|r 79 YDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRS 122 (1187)
Q Consensus 79 Yd~~sp~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqkl 122 (1187)
T Consensus 194 ~GG~----~~~-~q~~---~l~----~~~~dIvVaTPGRL~~l~ 225 (472)
T PRK01297 194 VGGM----DFD-KQLK---QLE----ARFCDILVATPGRLLDFN 225 (472)
T ss_pred ECCC----CHH-HHHH---HHH----CCCCCEEEECHHHHHHHH
T ss_conf 7898----879-9999---985----589988997979999874