HHsearch alignment for GI: 254780947 and conserved domain: PRK02362
>PRK02362 ski2-like helicase; Provisional.
Probab=99.83 E-value=3.6e-17 Score=151.03 Aligned_cols=317 Identities=21% Similarity=0.279 Sum_probs=217.7
Q ss_pred CCCHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf 87846789899848888-87448999999987605988541443166543248999999987511275499982436655
Q gi|254780947|r 609 MVSQDLYSQFIKRFPHV-ETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLV 687 (1187)
Q Consensus 609 ~~d~~~~~eFe~~Fpye-ET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa 687 (1187)
T Consensus 7 ~LP~~~~~~~~-~~gI~~Lyp~Q~eal~~---gl~~g~--NlvvsaPTgsGKTlvAElail~~l~~g~k~vYi~P~kALa 80 (736)
T PRK02362 7 PLPDGVIDFYE-GSGIEELYPPQAEAVEA---GLLEGK--NLLAAIPTASGKTLLAELAMLKAIAEGGKALYIVPLRALA 80 (736)
T ss_pred CCCHHHHHHHH-HCCCCCCCHHHHHHHHH---HHCCCC--CEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEECCHHHHH
T ss_conf 99989999999-76997578999999986---435698--1899799998589999999999998399799985879999
Q ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECH----HHHCCCCC-CCCCCEEEEECHHHHHHH
Q ss_conf 5899999986067898335410666302567777531225760898520----65427852-023656997222330088
Q gi|254780947|r 688 RQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTH----ALLNPKIT-FANLGLIIIDEEQHFGVK 762 (1187)
Q Consensus 688 ~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH----~ll~~~v~-f~~LgLliiDEEqrFGV~ 762 (1187)
T Consensus 81 ~EK~~~~~-~~~~~gi~V~~~tGd~~~~~-----~~--l~~~dIiV~T~EK~dsl~r~~~~~l~~v~lVViDEiHli~d~ 152 (736)
T PRK02362 81 SEKFEEFS-EFSELGLRVGISTGDYDRRD-----EY--LGRNDIIVATSEKTDSLLRNGAPWIDDISCVVADEVHLIDSP 152 (736)
T ss_pred HHHHHHHH-HHHCCCCEEEEEECCCCCCH-----HH--CCCCCEEEECHHHHHHHHHCCCHHHHCCCEEEEECCEEECCC
T ss_conf 99999999-87457998999808988783-----14--368999999979999998448167650898998176786688
Q ss_pred HH--------HHHHHCCCCCCEEEEECC-CCCHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEE-----C----------
Q ss_conf 89--------988631678848999535-34088999971222541220157887753799985-----7----------
Q gi|254780947|r 763 HK--------EALKETHTGVHVLTLSAT-PIPRTLQLAITGVRELSLISMPPINRIACRTSISI-----F---------- 818 (1187)
Q Consensus 763 ~K--------e~lk~~~~~vdvLtlsAT-PIPRTL~msl~g~rd~S~i~tpP~~R~~v~T~v~~-----~---------- 818 (1187)
T Consensus 153 ~RG~~lE~~lskl~~~~~~iqiIgLSATl~N~~~la~WL~a----~~~~s-~~RPV~L~~~v~~~~~~~~~~~~~~~~~~ 227 (736)
T PRK02362 153 NRGPTLEVTLAKLRRLNPDMQVIALSATIGNADELAAWLDA----ELVDS-EWRPVDLREGVFYGGAIHFKDTERELEVP 227 (736)
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCC----CCCCC-CCCCCCCEEEEEECCEECCCCCCCHHCCC
T ss_conf 72499999999997338774389862455899999998388----62158-98886755656507701035100300025
Q ss_pred CHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHH-----------------------HCC-----------CCCEE
Q ss_conf 97898999998987188599982644692889999986-----------------------165-----------46488
Q gi|254780947|r 819 DPLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQS-----------------------EVP-----------ELKIA 864 (1187)
Q Consensus 819 ~~~~i~~ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~-----------------------l~p-----------~~~i~ 864 (1187)
T Consensus 228 ~~~~~~~l~~~~~~~~~~~LVF~~SR~~~e~~A~~la~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~L~~~l~~GVa 307 (736)
T PRK02362 228 SKDEDLNLVLDTLDEGGQCLVFVSSRRNAEAFAKRAASALKKALSAEEREALAGIAEEIREVSETDTSKVLADCVRSGAA 307 (736)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCEE
T ss_conf 64058999999997399069998249999999999987524215756688999999999734442035999999960948
Q ss_pred EEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHC----CC-----CHHHHHHHHCCCCC--C
Q ss_conf 8613467478999999996388757976102003633223326676250235----88-----60455322103567--6
Q gi|254780947|r 865 MAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMF----GL-----AQLYQLRGRVGRSK--I 933 (1187)
Q Consensus 865 vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~----GL-----aqlyQlrGRVGRs~--~ 933 (1187)
T Consensus 308 fHHAGL~~~~R~lVE~~Fr~g~Ikvl~aTsTLA~GVNLPA-r~VIi~~~~~~~~~~g~~~l~~~e~~QM~GRAGRpg~D~ 386 (736)
T PRK02362 308 FHHAGLSREHRELVEEGFRDGLIKVISSTPTLAAGLNLPA-RRVIIRDYRRYDSGAGMQPIPVLEYHQMAGRAGRPRLDP 386 (736)
T ss_pred EECCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCE-EEEEEECCEEECCCCCCEECCHHHHHHHHHHCCCCCCCC
T ss_conf 5159999899999999998799838972516650557852-699980436736988833688999999985248998898
Q ss_pred CCEEEEEECCCC
Q ss_conf 736999966888
Q gi|254780947|r 934 ASFALFLLPENR 945 (1187)
Q Consensus 934 ~ayayl~~~~~~ 945 (1187)
T Consensus 387 ~G~aili~~~~~ 398 (736)
T PRK02362 387 YGEAVLLAKSYD 398 (736)
T ss_pred CCEEEEEECCHH
T ss_conf 862999967827