HHsearch alignment for GI: 254780947 and conserved domain: PRK04537

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional.
Probab=99.90  E-value=1.4e-18  Score=161.85  Aligned_cols=334  Identities=18%  Similarity=0.168  Sum_probs=246.1

Q ss_pred             CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHC----------CCCEE
Q ss_conf             78784678989984888887448999999987605988541443166543248999999987511----------27549
Q gi|254780947|r  608 LMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVM----------NGLQV  677 (1187)
Q Consensus       608 f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~----------~gkQv  677 (1187)
T Consensus        14 LgL~~~Ll~aL~~~Gf~~PTpIQ~~aIP~iL~G------kDvi~~A~TGSGKTLAYlLPiL~~Ll~~~~l~~~~~~~p~a   87 (574)
T PRK04537         14 FDLHPALVAGLESAGFTRCTPIQALTLPVALPG------GDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRA   87 (574)
T ss_pred             CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCC------CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEE
T ss_conf             698999999999779998999999999999579------98899848988899999999999998374434577899619


Q ss_pred             EEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEC-HHHH----C-CCCCCCCCCEE
Q ss_conf             9982436655589999998606789833541066630256777753122576089852-0654----2-78520236569
Q gi|254780947|r  678 AVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGT-HALL----N-PKITFANLGLI  751 (1187)
Q Consensus       678 avlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGT-H~ll----~-~~v~f~~LgLl  751 (1187)
T Consensus        88 LILvPTRELA~QI~~~~~~l~~~~~lr~~~l~GG~~~~~q~~~L~---~-g~dIVVaTPGRLld~L~~~~~~~L~~vk~L  163 (574)
T PRK04537         88 LILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQ---Q-GVDVIIATPGRLIDYVKQHKVVSLHACEIC  163 (574)
T ss_pred             EEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHC---C-CCCEEEECHHHHHHHHHHCCCCCCCCEEEE
T ss_conf             997798999999999999986458977999979966889999873---5-999899898999999981798653331589


Q ss_pred             EEECHHH-----HHHHHHHHHHHCCC--CCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCC--CCEEEEEEECCHHH
Q ss_conf             9722233-----00888998863167--884899953534088999971222541220157887--75379998579789
Q gi|254780947|r  752 IIDEEQH-----FGVKHKEALKETHT--GVHVLTLSATPIPRTLQLAITGVRELSLISMPPINR--IACRTSISIFDPLV  822 (1187)
Q Consensus       752 iiDEEqr-----FGV~~Ke~lk~~~~--~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R--~~v~T~v~~~~~~~  822 (1187)
T Consensus       164 VLDEAD~LLd~gF~~di~~IL~~lP~~~~rQ~iLfSATl~~~V~~la~~~l~~P~~i~v~~~~~~~~~I~Q~~~~~~~~~  243 (574)
T PRK04537        164 VLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDEE  243 (574)
T ss_pred             EECCCHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEECCHHH
T ss_conf             96273265428779999999996665568558999832777999999997799869996566545776038999777789


Q ss_pred             HHHHHHHHH--HHCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCC
Q ss_conf             899999898--718859998264469288999998616546488861346747899999999638875797610200363
Q gi|254780947|r  823 VRETLMREY--YRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGL  900 (1187)
Q Consensus       823 i~~ai~rEl--~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGl  900 (1187)
T Consensus       244 K~~~L~~LL~~~~~~k~IIF~nT~~~ve~l~~~L~~~--g~~v~~LHG~lsQ~eR~~~L~~Fk~G~~~VLVaTDVAARGI  321 (574)
T PRK04537        244 KQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERH--GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGL  321 (574)
T ss_pred             HHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCC
T ss_conf             9999999997267765115334189999999999977--99689970999999999999999769997997735002335


Q ss_pred             CCCCCCEEEEECHHHCCCCHHHHHH-HHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             3223326676250235886045532-210356767369999668888898899999999972
Q gi|254780947|r  901 DLPKANTMIVQRADMFGLAQLYQLR-GRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSL  961 (1187)
Q Consensus       901 Dip~aNTiii~~ad~~GLaqlyQlr-GRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~  961 (1187)
T Consensus       322 DIp~V~~VINYDlP~~--~e~YVHRIGRTGRaGr~G~AITfv~------~~e~~~l~~IE~~  375 (574)
T PRK04537        322 HIDGVKYVYNYDLPFD--AEDYVHRIGRTARLGEEGDAISFAC------ERYAMSLPDIEAY  375 (574)
T ss_pred             CCCCCCEEEEECCCCC--HHHHHCCCCHHHCCCCCEEEEEEEC------HHHHHHHHHHHHH
T ss_conf             7146997999579698--2141124535037899335999877------7998999999998