HHsearch alignment for GI: 254780947 and conserved domain: PRK05580
>PRK05580 primosome assembly protein PriA; Validated.
Probab=100.00 E-value=1.2e-30 Score=254.84 Aligned_cols=340 Identities=26% Similarity=0.306 Sum_probs=271.7
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCC
Q ss_conf 48888874489999999876059885414431665432489999999875112754999824366555899999986067
Q gi|254780947|r 621 RFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQG 700 (1187)
Q Consensus 621 ~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~ 700 (1187)
T Consensus 164 ~~~~~L~~eQ~~a~~~i~~-~~~~~~--~LL~GvTGSGKTevYl~li~~~l~~GkqvLiLvPEI~lt~q~~~rl~~~f-- 238 (699)
T PRK05580 164 TEPPTLNEEQAAALAAIRA-AGGFSA--FLLDGVTGSGKTEVYLQAIAEALAQGKQALVLVPEIALTPQLLARFRARF-- 238 (699)
T ss_pred CCCCCCCHHHHHHHHHHHH-CCCCCC--EEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHH--
T ss_conf 6787889999999999985-588871--78747898607999999999999739978999176787899999999870--
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEEECHH----------HHHHHHHHHHHHC
Q ss_conf 898335410666302567777531225760898520654278520236569972223----------3008889988631
Q gi|254780947|r 701 FSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQ----------HFGVKHKEALKET 770 (1187)
Q Consensus 701 ~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLliiDEEq----------rFGV~~Ke~lk~~ 770 (1187)
T Consensus 239 -g~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAvF--aP~~nLgLIIVDEEhd~SYKq~~~Pry~ARdvA~~Ra~ 315 (699)
T PRK05580 239 -GARVAVLHSGLSDGERYRAWLAALRGEARVVIGTRSALF--APFKNLGLIIVDEEHDDSYKQQDGPRYHARDVAVLRAK 315 (699)
T ss_pred -CCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCEEE--CCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHH
T ss_conf -995799648898579999999997699719997360110--65789848999736545444666876119999999999
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCC-CCCCCEEEEEEEC---------CHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 67884899953534088999971222541220157-8877537999857---------9789899999898718859998
Q gi|254780947|r 771 HTGVHVLTLSATPIPRTLQLAITGVRELSLISMPP-INRIACRTSISIF---------DPLVVRETLMREYYRGGQSFYV 840 (1187)
Q Consensus 771 ~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP-~~R~~v~T~v~~~---------~~~~i~~ai~rEl~RgGQvf~v 840 (1187)
T Consensus 316 ~~~~~liLgSaTPSlEs~~~~~~g~~~~~~l~~r~~~~~~P~v~ivDm~~~~~~~~~~ls~~l~~~i~~~L~~g~qvll~ 395 (699)
T PRK05580 316 QEGCPVVLGSATPSLESLANAESGKYHLLRLTRRAGAAALPRVEIIDMREEPLERGAGLSPPLLEAIREALERGEQVLLF 395 (699)
T ss_pred HHCCCEEECCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 84998896168999999999975997664465322347898379335421410025754699999999999738847999
Q ss_pred ECCCC------------------------------------------------------------CHHHHHHHHHHHCCC
Q ss_conf 26446------------------------------------------------------------928899999861654
Q gi|254780947|r 841 CPRLS------------------------------------------------------------DLEKCYTFLQSEVPE 860 (1187)
Q Consensus 841 ~nrv~------------------------------------------------------------~i~~~~~~l~~l~p~ 860 (1187)
T Consensus 396 lnRrGya~~~~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cgs~~l~~~g~Gteri~eel~~~FP~ 475 (699)
T PRK05580 396 LNRRGYAPFLLCRDCGWVARCPHCDGPLTLHRAGRRLRCHHCGYQEPIPRACPECGSTDLRAVGVGTERTEEELARLFPG 475 (699)
T ss_pred ECCCCCCCEEECHHCCCEEECCCCCCEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 54775225147453199456567898634206898332264688365755465679975241116859999999977899
Q ss_pred CCEEEEECCC--CHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCC-----------CCHHHHHHHH
Q ss_conf 6488861346--74789999999963887579761020036332233266762502358-----------8604553221
Q gi|254780947|r 861 LKIAMAHGQM--SPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFG-----------LAQLYQLRGR 927 (1187)
Q Consensus 861 ~~i~vaHGqm--~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~G-----------LaqlyQlrGR 927 (1187)
T Consensus 476 ~~i~r~d~d~~~~~~~~~~~~~~~~~~~~dIlvGTqmiakG~df~~v~lv~vldaD~~l~~pd~ra~E~~~qll~qvagr 555 (699)
T PRK05580 476 ARVLRIDRDTTRRKGALEQLLEDFARGEADILVGTQMLAKGHDFPNVTLVGVLDADTGLFSPDFRAAERTFQLLTQVAGR 555 (699)
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 98899847556786316889999746898789777334556777762699873226535488834799999999999876
Q ss_pred CCCCCCCCEEEEE-ECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 0356767369999-668888898899999999972556524899999985116
Q gi|254780947|r 928 VGRSKIASFALFL-LPENRPLTAAAQKRLRILQSLNTLGAGFQLASYDLDIRG 979 (1187)
Q Consensus 928 VGRs~~~ayayl~-~~~~~~l~~~a~kRL~ai~~~~~lGsGf~iA~~DleiRG 979 (1187)
T Consensus 556 agr~~~~g~viiQt~~p~~~-------~~~~l~~~d----~~~f~~~el~~R~ 597 (699)
T PRK05580 556 AGRAEKPGEVLIQTYEPEHP-------LLQALLRWD----YDAFAEAELAERR 597 (699)
T ss_pred HCCCCCCCEEEEEECCCCCH-------HHHHHHHCC----HHHHHHHHHHHHH
T ss_conf 55678898799993799989-------999999689----9999999999999