HHsearch alignment for GI: 254780947 and conserved domain: PRK05580

>PRK05580 primosome assembly protein PriA; Validated.
Probab=96.77  E-value=0.014  Score=38.53  Aligned_cols=302  Identities=16%  Similarity=0.182  Sum_probs=148.1

Q ss_pred             CCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHC-CC---------CCCCCCCCHHHHHCCCCCCEEEEECCC
Q ss_conf             18589999999999867982999958945899999867764-88---------733234522455204668479998104
Q gi|254780947|r  391 GGRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESH-GF---------KKIKKINTLTEINSLLKEEIAAVILPI  460 (1187)
Q Consensus       391 ~g~l~~L~~~I~~~~k~g~rViI~a~s~~~~eRL~elL~e~-gI---------~~~~~~~~~~~~~~~~~~~i~i~~~~L  460 (1187)
T Consensus       197 SGKTevYl~li~~~l~~GkqvLiLvPEI~lt~q~~~rl~~~fg~~v~v~HS~ls~~eR~~~w~~---i~~G~~~IVIGtR  273 (699)
T PRK05580        197 SGKTEVYLQAIAEALAQGKQALVLVPEIALTPQLLARFRARFGARVAVLHSGLSDGERYRAWLA---ALRGEARVVIGTR  273 (699)
T ss_pred             CHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHH---HHCCCCEEEEECC
T ss_conf             6079999999999997399789991767878999999998709957996488985799999999---9769971999736


Q ss_pred             CCCC---CCCCEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEECCCCCEEEECCCCCCCCCCCCCEEE
Q ss_conf             4687---4665688712-00137311122122222221101224440323511203554233112310145666663599
Q gi|254780947|r  461 NQGF---ETKHMILVTE-TDLLGKKIARRVVRKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLE  536 (1187)
Q Consensus       461 ~~GF---~~~kl~vITE-~EIFG~k~~~r~~rkk~~~~~~i~dl~eL~~GDyVVH~dHGIGrY~GLe~l~v~G~~~DyL~  536 (1187)
T Consensus       274 SAvFaP~~nLgLIIVDEEhd~SY----Kq~-~~Pry~AR---dvA~------~Ra~~~~~~liLgSaTPSlEs~~----~  335 (699)
T PRK05580        274 SALFAPFKNLGLIIVDEEHDDSY----KQQ-DGPRYHAR---DVAV------LRAKQEGCPVVLGSATPSLESLA----N  335 (699)
T ss_pred             CEEECCCCCCCEEEEECCCCHHH----CCC-CCCCCCHH---HHHH------HHHHHHCCCEEECCCCCCHHHHH----H
T ss_conf             01106578984899973654544----466-68761199---9999------99998499889616899999999----9


Q ss_pred             EEECCCCEEEEEHHHHHHHHHHCCCCCCCCCC-------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99869987996667521111003678885323-------------43403489999999999999999999999988740
Q gi|254780947|r  537 LHYADNAKLFVPVENIDLISRYSTEITTVTLD-------------KLGGSAWKTRKANLKKRLEDLAQKLVDIAAKRAIH  603 (1187)
Q Consensus       537 IeYa~~DkLYVPv~~l~lIskYg~~~~~p~L~-------------kLGg~~W~k~K~Kakk~v~diA~eLl~lyA~R~~~  603 (1187)
T Consensus       336 ~~-~g~~~~------~~l~~r~~~~-~~P~v~ivDm~~~~~~~~~~ls~~l~~~i~~~L~~g~----qvll~-----lnR  398 (699)
T PRK05580        336 AE-SGKYHL------LRLTRRAGAA-ALPRVEIIDMREEPLERGAGLSPPLLEAIREALERGE----QVLLF-----LNR  398 (699)
T ss_pred             HH-CCCCEE------ECCCCCCCCC-CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCC----EEEEE-----ECC
T ss_conf             97-599766------4465322347-8983793354214100257546999999999997388----47999-----547


Q ss_pred             CCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECH
Q ss_conf             15677878467898998488888744899999998760598854144316654324899999998751127549998243
Q gi|254780947|r  604 SVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPT  683 (1187)
Q Consensus       604 ~g~~f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPT  683 (1187)
T Consensus       399 rGya~~-------~~C~~Cg~~~~C~------~C~~~L~~h~~~~~l~Ch~Cg~~~~-----~~~~Cp~Cgs--~~l~~~  458 (699)
T PRK05580        399 RGYAPF-------LLCRDCGWVARCP------HCDGPLTLHRAGRRLRCHHCGYQEP-----IPRACPECGS--TDLRAV  458 (699)
T ss_pred             CCCCCE-------EECHHCCCEEECC------CCCCEEEECCCCCCEECCCCCCCCC-----CCCCCCCCCC--CCCCCC
T ss_conf             752251-------4745319945656------7898634206898332264688365-----7554656799--752411


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEECC--CCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEE
Q ss_conf             665558999999860678983354106--6630256777753122576089852065427852023656997
Q gi|254780947|r  684 TLLVRQHFRLFSERFQGFSVRIASISR--FVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIII  753 (1187)
Q Consensus       684 TiLa~QH~~tf~~Rf~~~pv~i~~lsR--f~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLlii  753 (1187)
T Consensus       459 g~Gteri~eel~~~FP~~~--i~r~d~d~~~~~~~~~~~~~~~~~~~~dIlvGTq-miakG~df~~v~lv~v  527 (699)
T PRK05580        459 GVGTERTEEELARLFPGAR--VLRIDRDTTRRKGALEQLLEDFARGEADILVGTQ-MLAKGHDFPNVTLVGV  527 (699)
T ss_pred             CHHHHHHHHHHHHHCCCCC--EEEECCCCCCCCCCHHHHHHHHHCCCCCEEECCC-CCCCCCCCCCEEEEEE
T ss_conf             1685999999997789998--8998475567863168899997468987897773-3455677776269987