HHsearch alignment for GI: 254780947 and conserved domain: PRK11192
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional.
Probab=99.94 E-value=1.5e-21 Score=184.88 Aligned_cols=338 Identities=19% Similarity=0.185 Sum_probs=250.8
Q ss_pred CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHC-------CCCEEEE
Q ss_conf 778784678989984888887448999999987605988541443166543248999999987511-------2754999
Q gi|254780947|r 607 PLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVM-------NGLQVAV 679 (1187)
Q Consensus 607 ~f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~-------~gkQvav 679 (1187)
T Consensus 7 ~l~L~~~l~~~L~~~g~~~pT~IQ~~aIp~il~g------~dvl~~A~TGSGKTlaylLPil~~l~~~~~~~~~~~~~LI 80 (417)
T PRK11192 7 ELDLDPSLLEALQDKGYTRPTAIQAEAIPPALDG------RDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILI 80 (417)
T ss_pred HCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCC------CCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 7798999999999779999999999999999779------9889989998679999999999998752103689964999
Q ss_pred EECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHH-----HHCCCCCCCCCCEEEEE
Q ss_conf 8243665558999999860678983354106663025677775312257608985206-----54278520236569972
Q gi|254780947|r 680 IAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHA-----LLNPKITFANLGLIIID 754 (1187)
Q Consensus 680 lvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~-----ll~~~v~f~~LgLliiD 754 (1187)
T Consensus 81 l~PTrELa~Qi~~~~~~l~~~~~i~~~~i~Gg~~~~~q~~~l~----~~~dIlV~TPgRL~~~l~~~~~~l~~l~~lVlD 156 (417)
T PRK11192 81 LTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFS----ENQDIVVATPGRLLQYIKEENFDCRAVETLILD 156 (417)
T ss_pred EECHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHH----CCCCEEEECCCHHHHHHHHCCCCCCCCCEEEEE
T ss_conf 9471999999999999864005730599856878799999983----699989978607777886367010457489996
Q ss_pred CHHH-----HHHHHHHHHHHCCCCCCEEEEECCCCCH-HHHHHHHCCCCCCEEECCCCCC--CCEEEEEEECCHHHHHHH
Q ss_conf 2233-----0088899886316788489995353408-8999971222541220157887--753799985797898999
Q gi|254780947|r 755 EEQH-----FGVKHKEALKETHTGVHVLTLSATPIPR-TLQLAITGVRELSLISMPPINR--IACRTSISIFDPLVVRET 826 (1187)
Q Consensus 755 EEqr-----FGV~~Ke~lk~~~~~vdvLtlsATPIPR-TL~msl~g~rd~S~i~tpP~~R--~~v~T~v~~~~~~~i~~a 826 (1187)
T Consensus 157 EAD~mld~gF~~~i~~I~~~~~~~~Q~llfSATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~ 236 (417)
T PRK11192 157 EADRMLDMGFAQDVEHIAAETRWRKQTLLFSATLEGDGVQDFAERLLNDPVEVDAEPSRRERKKIHQWYYRADDLEHKTA 236 (417)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECCHHHHHH
T ss_conf 75521113547899999864767723899973268478999999836798899964676666743699999376899999
Q ss_pred HHHHHH---HCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCC
Q ss_conf 998987---18859998264469288999998616546488861346747899999999638875797610200363322
Q gi|254780947|r 827 LMREYY---RGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLP 903 (1187)
Q Consensus 827 i~rEl~---RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip 903 (1187)
T Consensus 237 ~L~~ll~~~~~~k~iIF~~t~~~~~~l~~~L~~~--g~~~~~lhg~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~ 314 (417)
T PRK11192 237 LLCHLLKQEEVTRSIVFVRTRERVHELAGWLRKA--GINCCYLEGEMVQKKRNEAIKRLTDGRVNVLVATDVAARGIDID 314 (417)
T ss_pred HHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHCC--CCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCC
T ss_conf 9999985347665215311246676898865314--88357540017999999999999769998999812434677704
Q ss_pred CCCEEEEECHHHCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 332667625023588604553221035676736999966888889889999999997255
Q gi|254780947|r 904 KANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNT 963 (1187)
Q Consensus 904 ~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~~~ 963 (1187)
T Consensus 315 ~V~~VInyd~P~-~~~~YvHRiGRTGR~G~~G~ait~v~~~------d~~~~~~ie~~~~ 367 (417)
T PRK11192 315 DISHVINFDMPR-SADTYLHRIGRTGRAGKKGTAISLVEAH------DHLLLGKIERYIE 367 (417)
T ss_pred CCCEEEEECCCC-CHHHHHHHCCHHHCCCCCEEEEEEECHH------HHHHHHHHHHHHC
T ss_conf 698899979999-8889233067723489954899987489------9999999999977