HHsearch alignment for GI: 254780947 and conserved domain: PRK11448
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional.
Probab=98.91 E-value=1.8e-06 Score=68.69 Aligned_cols=290 Identities=20% Similarity=0.289 Sum_probs=177.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC--CEEEEEECHHHHHHHHHHHHHHHHCC
Q ss_conf 8888744899999998760598854144316654324899999998751127--54999824366555899999986067
Q gi|254780947|r 623 PHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNG--LQVAVIAPTTLLVRQHFRLFSERFQG 700 (1187)
Q Consensus 623 pyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~g--kQvavlvPTTiLa~QH~~tf~~Rf~~ 700 (1187)
T Consensus 414 ~i~lR~YQ~~AI~~v~~a~~~~~r-raLl~MATGTGKTrtaial~~rLlk~~~~kRILFLvDR~~L~~QA~~~F~~-~~- 490 (1126)
T PRK11448 414 ELGLRYYQEDAIQAVEKALANGQR-EILLAMATGTGKTRTAIALMYRLLKAKRFKRILFLVDRRALGEQALDAFKD-TK- 490 (1126)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCC-CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHH-CC-
T ss_conf 777868899999999999980985-468872488858989999999999658767257985658999999998754-34-
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHH-----HHCCC------CCCCCCCEEEEECHHHH----------
Q ss_conf 8983354106663025677775312257608985206-----54278------52023656997222330----------
Q gi|254780947|r 701 FSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHA-----LLNPK------ITFANLGLIIIDEEQHF---------- 759 (1187)
Q Consensus 701 ~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~-----ll~~~------v~f~~LgLliiDEEqrF---------- 759 (1187)
T Consensus 491 ----~~~~~~~~~~~~v~~l~~~~~~~~~rv~isT~q~m~~~i~~~~~~~~~~~~~--FDlIIiDEaHRgy~ld~em~e~ 564 (1126)
T PRK11448 491 ----IEGNQTFASIYDIKGLTDKFPEDETKVHVATVQSMVKRILQSDDSEPPPVGQ--YDCIVVDEAHRGYTLDKEMTEG 564 (1126)
T ss_pred ----CCCCCCCCHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCCCC--CCEEEEECCCCCCCCCCCCCCC
T ss_conf ----5456664002200102567878777199973078998752357677999985--1379897787887433231100
Q ss_pred --H--------HHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHC-----------CCCCCEEEC-CCCCCCCEEEEEE-
Q ss_conf --0--------8889988631678848999535340889999712-----------225412201-5788775379998-
Q gi|254780947|r 760 --G--------VKHKEALKETHTGVHVLTLSATPIPRTLQLAITG-----------VRELSLISM-PPINRIACRTSIS- 816 (1187)
Q Consensus 760 --G--------V~~Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g-----------~rd~S~i~t-pP~~R~~v~T~v~- 816 (1187)
T Consensus 565 e~~~rd~~s~~skyr~IldYF--DA~~iGLTATP~~~T~~~F--g~P~~~Ys~~eAV~DG~LVd~~~P---~~i~T~l~~ 637 (1126)
T PRK11448 565 ELQFRDQLDYVSKYRRVLDYF--DAVKIGLTATPALHTTEIF--GEPVYTYSYREAVIDGYLIDHEPP---IRIETKLAK 637 (1126)
T ss_pred HHCCCCHHHHHHHHHHHHHHH--HHHHHCCCCCCCCCHHHHH--CCCCEEECHHHHHCCCCCCCCCCC---EEEEEEEEC
T ss_conf 010232024777899998762--1554047679995556770--997300058887304755688688---799756510
Q ss_pred -----------------------------------ECCHHHH----HHHHHHHH----HHC--CEEEEEECCCCCHHHHH
Q ss_conf -----------------------------------5797898----99999898----718--85999826446928899
Q gi|254780947|r 817 -----------------------------------IFDPLVV----RETLMREY----YRG--GQSFYVCPRLSDLEKCY 851 (1187)
Q Consensus 817 -----------------------------------~~~~~~i----~~ai~rEl----~Rg--GQvf~v~nrv~~i~~~~ 851 (1187)
T Consensus 638 ~Gi~~~~~e~~~~~~~~~~~~~~~~~~de~~~~~~~fnr~v~~~~~nr~v~~~l~~~~~~~~~gKTiIFA~~~~HAd~Iv 717 (1126)
T PRK11448 638 EGIHFEKGEQVEVINTQTGEIDNDTLEDELDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFCVTDAHADMVV 717 (1126)
T ss_pred CCCCCCCCCHHHHCCCHHHHHHCCCCCCCCCCCHHHHCCHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHH
T ss_conf 46035876434420300000202558731337888827320383479999999998458899987699927869999999
Q ss_pred HHHHHHC----C---CCCEEEEECCCCHHHHHHHHHHHHCCCC-CEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHH
Q ss_conf 9998616----5---4648886134674789999999963887-579761020036332233266762502358860455
Q gi|254780947|r 852 TFLQSEV----P---ELKIAMAHGQMSPKNLEDKMNAFYEGQY-DVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQ 923 (1187)
Q Consensus 852 ~~l~~l~----p---~~~i~vaHGqm~~~~le~~m~~F~~~~~-dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQ 923 (1187)
T Consensus 718 ~~l~e~F~~~y~~~~~~~~~~It~~~~--~~~~lI~~Fkn~~~P~IAVTVDmL~TGiDVPei~nLVF~R~V-~S~i~F~Q 794 (1126)
T PRK11448 718 RLLKEAFKKKYGQVEDDAIIKITGDAD--KVQQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRV-KSRILYEQ 794 (1126)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEECCCC--CHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEC-CCHHHHHH
T ss_conf 999999886478767844899708884--478999972578998389985621047666420168876675-66778665
Q ss_pred HHHHCCCC
Q ss_conf 32210356
Q gi|254780947|r 924 LRGRVGRS 931 (1187)
Q Consensus 924 lrGRVGRs 931 (1187)
T Consensus 795 MiGRGTRl 802 (1126)
T PRK11448 795 MKGRATRL 802 (1126)
T ss_pred HHCCCCCC
T ss_conf 41675543