HHsearch alignment for GI: 254780947 and conserved domain: PRK12899
>PRK12899 secA preprotein translocase subunit SecA; Reviewed.
Probab=92.98 E-value=0.54 Score=26.43 Aligned_cols=194 Identities=19% Similarity=0.245 Sum_probs=85.0
Q ss_pred CHHHHCCCCCC--CCCCEEEEECH-------HHHH------HHHHHHHHHCCCCCCEEE---------------EECCCC
Q ss_conf 20654278520--23656997222-------3300------888998863167884899---------------953534
Q gi|254780947|r 735 THALLNPKITF--ANLGLIIIDEE-------QHFG------VKHKEALKETHTGVHVLT---------------LSATPI 784 (1187)
Q Consensus 735 TH~ll~~~v~f--~~LgLliiDEE-------qrFG------V~~Ke~lk~~~~~vdvLt---------------lsATPI 784 (1187)
T Consensus 435 A~~lf~kd~dYiV~d~~VvIVDEfTGR~m~gRr~sdGLHQAIEAKEgV~I~~e~qTlAsIT~QnfFR~Y~kLsGMTGTA- 513 (969)
T PRK12899 435 AHLLMERDVDYIVRDDQIVIIDEHTGRPQPGRRFSEGLHQAIEAKEHVTIRKESQTFATVTLQNFFRLYEKLAGMTGTA- 513 (969)
T ss_pred HHHHHHCCCEEEEECCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCHHHCCCCCCC-
T ss_conf 9998835980899789089985677765889845521889999873898676761365536999983050430686574-
Q ss_pred CHHHHHHHHCCCCCCEEECCCCC---C--CCEEEEEEECC--HHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 08899997122254122015788---7--75379998579--78989999989871885999826446928899999861
Q gi|254780947|r 785 PRTLQLAITGVRELSLISMPPIN---R--IACRTSISIFD--PLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSE 857 (1187)
Q Consensus 785 PRTL~msl~g~rd~S~i~tpP~~---R--~~v~T~v~~~~--~~~i~~ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l 857 (1187)
T Consensus 514 -~tea~Ef~~IY~L~Vv~IPTNrP~~R~D~~D~vy~T~~~K~~Avi~eI-~~~h~~GqPVLVGT~SVe~SE~lS~~L~~~ 591 (969)
T PRK12899 514 -ITESREFKEIYNLYVLQVPTFKPCLRIDHNDEFYMTEREKYHAIVNEI-ASIHRSGNPILIGTESVEVSEKLSRILRQN 591 (969)
T ss_pred -HHHHHHHHHHHCCCEEEECCCCCCEEECCCCEEECCHHHHHHHHHHHH-HHHHHCCCCEEEEECCHHHHHHHHHHHHHC
T ss_conf -768999999868835996799982123288838528999999999999-999957998899838579999999999986
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHH--------------H
Q ss_conf 65464888613467478999999996388757976102003633223326676250235886045--------------5
Q gi|254780947|r 858 VPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLY--------------Q 923 (1187)
Q Consensus 858 ~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqly--------------Q 923 (1187)
T Consensus 592 --gI~H~VLNAK--~h~~EAeIIA~AG~~GaVTIATNMAGRGTDIkL~-------~~V~~lGGLhVIGTERHESRRIDnQ 660 (969)
T PRK12899 592 --RIEHTVLNAK--NHAQEAEIIAGAGKLGAVTVATNMAGRGTDIKLD-------EEAVAVGGLHVIGTSRHQSRRIDRQ 660 (969)
T ss_pred --CCCHHHCCCH--HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCC-------CCHHHCCCEEEEECCCCHHHHHHHH
T ss_conf --9964541511--1789999999559999779713267898583138-------1334338727852143401457767
Q ss_pred HHHHCCCCCCCCEEEEEEC
Q ss_conf 3221035676736999966
Q gi|254780947|r 924 LRGRVGRSKIASFALFLLP 942 (1187)
Q Consensus 924 lrGRVGRs~~~ayayl~~~ 942 (1187)
T Consensus 661 LRGRaGRQGDPGsS~F~lS 679 (969)
T PRK12899 661 LRGRCARLGDPGAAKFFLS 679 (969)
T ss_pred HHCCCCCCCCCCCCEEEEE
T ss_conf 6033134789985326765