HHsearch alignment for GI: 254780947 and conserved domain: PRK13766

>PRK13766 Hef nuclease; Provisional.
Probab=96.17  E-value=0.053  Score=34.18  Aligned_cols=92  Identities=7%  Similarity=0.178  Sum_probs=53.1

Q ss_pred             CEEEECCCCCCHHHHHHHHHH-----HCCCCEEEEECCHHHHHHHHHHHHHHCC--CCEEEECCCCCCCCHHCCCCCHHH
Q ss_conf             608980376522799999998-----6299899992998999999999998579--980998572246701004899899
Q gi|254780947|r   16 KKITLSPVIDGTEGFILAEIA-----RLGLSLVYICSDERILINLKKILTLVVP--DIRVIIFPAWDCLPYDRVSPSPYV   88 (1187)
Q Consensus        16 ~~i~l~Gl~gs~~allla~l~-----~~~rpilvI~~d~~~A~~l~~dL~~f~~--~~~V~~FP~~E~LPYd~~sp~~di   88 (1187)
T Consensus        30 ~NtiVvLPTG~GKT~IA~lvi~~~l~~~~gKilFLaPT~pLV~Qq~~~~~~~l~i~~~~i~~lt-------G~~~~~---   99 (764)
T PRK13766         30 GNTLVVLPTGLGKTAIALLVIAERLQKYGGKVLILAPTKPLVEQHAEFFRKFLNIDPEKIVVLT-------GEISPE---   99 (764)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEE-------CCCCHH---
T ss_conf             8989995998668999999999999748988999858888999999999997099955289998-------887827---


Q ss_pred             HHHHHHHHHHHHHCCCCCCCEEEEECHHHHH----CCCCCHHHH
Q ss_conf             9999999999841244688769995667852----369986688
Q gi|254780947|r   89 VTRRLSCISNLVSFNSSKETIIVLTTVSAVM----CRSVNIMSI  128 (1187)
Q Consensus        89 ~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALl----qklpp~~~l  128 (1187)
T Consensus       100 --~r~~~-w--------~~~~Viv~TPQvl~ndL~~g~i~l~dv  132 (764)
T PRK13766        100 --KRAAL-W--------EKAKVIVATPQVIENDLLAGRISLEDV  132 (764)
T ss_pred             --HHHHH-H--------CCCCEEEECCHHHHHHHHHCCCCHHHC
T ss_conf             --68998-6--------079999999089999998298678882