HHsearch alignment for GI: 254780947 and conserved domain: PRK13766
>PRK13766 Hef nuclease; Provisional.
Probab=96.17 E-value=0.053 Score=34.18 Aligned_cols=92 Identities=7% Similarity=0.178 Sum_probs=53.1
Q ss_pred CEEEECCCCCCHHHHHHHHHH-----HCCCCEEEEECCHHHHHHHHHHHHHHCC--CCEEEECCCCCCCCHHCCCCCHHH
Q ss_conf 608980376522799999998-----6299899992998999999999998579--980998572246701004899899
Q gi|254780947|r 16 KKITLSPVIDGTEGFILAEIA-----RLGLSLVYICSDERILINLKKILTLVVP--DIRVIIFPAWDCLPYDRVSPSPYV 88 (1187)
Q Consensus 16 ~~i~l~Gl~gs~~allla~l~-----~~~rpilvI~~d~~~A~~l~~dL~~f~~--~~~V~~FP~~E~LPYd~~sp~~di 88 (1187)
T Consensus 30 ~NtiVvLPTG~GKT~IA~lvi~~~l~~~~gKilFLaPT~pLV~Qq~~~~~~~l~i~~~~i~~lt-------G~~~~~--- 99 (764)
T PRK13766 30 GNTLVVLPTGLGKTAIALLVIAERLQKYGGKVLILAPTKPLVEQHAEFFRKFLNIDPEKIVVLT-------GEISPE--- 99 (764)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEE-------CCCCHH---
T ss_conf 8989995998668999999999999748988999858888999999999997099955289998-------887827---
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECHHHHH----CCCCCHHHH
Q ss_conf 9999999999841244688769995667852----369986688
Q gi|254780947|r 89 VTRRLSCISNLVSFNSSKETIIVLTTVSAVM----CRSVNIMSI 128 (1187)
Q Consensus 89 ~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALl----qklpp~~~l 128 (1187)
T Consensus 100 --~r~~~-w--------~~~~Viv~TPQvl~ndL~~g~i~l~dv 132 (764)
T PRK13766 100 --KRAAL-W--------EKAKVIVATPQVIENDLLAGRISLEDV 132 (764)
T ss_pred --HHHHH-H--------CCCCEEEECCHHHHHHHHHCCCCHHHC
T ss_conf --68998-6--------079999999089999998298678882