HHsearch alignment for GI: 254780947 and conserved domain: TIGR00595
>TIGR00595 priA primosomal protein N'; InterPro: IPR005259 All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.; GO: 0003677 DNA binding, 0006260 DNA replication.
Probab=99.84 E-value=2e-18 Score=160.73 Aligned_cols=288 Identities=26% Similarity=0.309 Sum_probs=250.7
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCC-CCCHHHHHHHHHHCCCC
Q ss_conf 43166543248999999987511275499982436655589999998606789833541066-63025677775312257
Q gi|254780947|r 650 LICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRF-VQTKEAALHKKSITEGQ 728 (1187)
Q Consensus 650 LiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf-~~~~e~~~i~~~l~~G~ 728 (1187)
T Consensus 1 ll~G~tGsGkte~y~~~~~~~l~~g~~~~~l~Pei~l~~q~~~~~~~~fg~---~~~~~h~~~l~~~~~~~~w~~~~~g~ 77 (524)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSALVLVPEIALTPQTLQRFKGRFGS---QVAVLHSGKLSDSEKLDAWRKVKLGE 77 (524)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCC---CHHHHCCCCCCCHHHHHHHHHHHCCC
T ss_conf 954567886168889999999733771789704211016789999997187---20101001367345688999985186
Q ss_pred CEEEEECHHHHCCCCCCCCCCEEEEECHHHHHHHHHHH-----------HHHCCCCCCEEEEECCCCCHHHHHHHHCCCC
Q ss_conf 60898520654278520236569972223300888998-----------8631678848999535340889999712225
Q gi|254780947|r 729 VDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEA-----------LKETHTGVHVLTLSATPIPRTLQLAITGVRE 797 (1187)
Q Consensus 729 idiviGTH~ll~~~v~f~~LgLliiDEEqrFGV~~Ke~-----------lk~~~~~vdvLtlsATPIPRTL~msl~g~rd 797 (1187)
T Consensus 78 ~~~v~G~rsa~f--~P~~~lglii~deehd~~yk~~~~~p~y~ar~~~~~~~~~~~~p~~lgsatP~le~~~~~~~~~~~ 155 (524)
T TIGR00595 78 ALVVIGTRSALF--LPLKNLGLIIVDEEHDSSYKQEELPPRYHARDVAVYRAKLFNCPVVLGSATPSLESYHNAKRGKYR 155 (524)
T ss_pred CEEEECCCHHHH--CCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCCCC
T ss_conf 005640303432--462114547873464521001368855206788988764048857880567227899998716656
Q ss_pred ----CCEEECCCCCCCCEEEEEEECCH-----------HHHHHHHHHHHHHCCEEEEEECCCC-----------------
Q ss_conf ----41220157887753799985797-----------8989999989871885999826446-----------------
Q gi|254780947|r 798 ----LSLISMPPINRIACRTSISIFDP-----------LVVRETLMREYYRGGQSFYVCPRLS----------------- 845 (1187)
Q Consensus 798 ----~S~i~tpP~~R~~v~T~v~~~~~-----------~~i~~ai~rEl~RgGQvf~v~nrv~----------------- 845 (1187)
T Consensus 156 p~~~~~~l~~r~~~~~~p~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~q~~~f~n~rg~~~~~~c~~cg~~~~cp 235 (524)
T TIGR00595 156 PQRHLLVLPRRVGGRKPPEVKLIDLRKEPRQGNRSFLSPELLTALEETLAAGEQAILFLNRRGYSPNLLCRSCGYVLECP 235 (524)
T ss_pred CHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEECCCCCCEECC
T ss_conf 20321110132057757515676221000213210225899999998874167068986155665300000267501056
Q ss_pred ------------------------------------------------CHHHHHHHHHHHCCCCCEEEEECCCCH--HHH
Q ss_conf ------------------------------------------------928899999861654648886134674--789
Q gi|254780947|r 846 ------------------------------------------------DLEKCYTFLQSEVPELKIAMAHGQMSP--KNL 875 (1187)
Q Consensus 846 ------------------------------------------------~i~~~~~~l~~l~p~~~i~vaHGqm~~--~~l 875 (1187)
T Consensus 236 ~c~~~~~~h~~~~~g~p~l~ch~c~~~~~~p~~cp~c~~~~~~~~~g~G~~~~~~~l~~~~p~~~~~~~d~d~~~~~~~~ 315 (524)
T TIGR00595 236 NCDVSLTYHKKEGNGQPKLRCHYCGYQEPVPKTCPACGSEDTLKYKGLGTEKVEEELAKLFPGARIARLDSDTTSRKGAH 315 (524)
T ss_pred CCCEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHH
T ss_conf 65302355321368862012210576677754364446643012035427899999998558873676412212351468
Q ss_pred HHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHC-----------CCCHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 99999996388757976102003633223326676250235-----------88604553221035676736999966
Q gi|254780947|r 876 EDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMF-----------GLAQLYQLRGRVGRSKIASFALFLLP 942 (1187)
Q Consensus 876 e~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~-----------GLaqlyQlrGRVGRs~~~ayayl~~~ 942 (1187)
T Consensus 316 ~~~~~~f~~g~~d~l~Gtq~~~kG~~fp~~~l~g~~~~d~~l~~~d~r~~e~~~~l~~q~~Gr~gr~~~~g~v~iqt~ 393 (524)
T TIGR00595 316 EALLNQFANGKADILIGTQMIAKGHDFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGEVIIQTY 393 (524)
T ss_pred HHHHHHHHCCCCEEEECHHHHHCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE
T ss_conf 999999750784067500344315774420367787312002554213467788888876410023468874799730